BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (512 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enteroba... 1056 0.0 UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobac... 511 e-143 UniRef50_Q6GZK0 Cad operon transcriptional activator (Fragment) ... 199 2e-49 UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax... 157 1e-36 UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 T... 144 8e-33 UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliiv... 134 7e-30 UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas... 112 3e-23 UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobact... 110 1e-22 UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanell... 108 4e-22 UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobact... 105 5e-21 UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vi... 104 7e-21 UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vi... 95 5e-18 UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=... 94 1e-17 UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vi... 92 5e-17 UniRef50_Q12IY1 Transcriptional regulatory protein-like protein ... 86 3e-15 UniRef50_A3UTR1 Transcriptional regulator CadC n=1 Tax=Vibrio sp... 86 4e-15 UniRef50_A4CDR3 Putative transcriptional regulator n=2 Tax=Pseud... 84 1e-14 UniRef50_B0RLM8 Transcriptional regulator n=6 Tax=Xanthomonas Re... 81 9e-14 UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax... 80 1e-13 UniRef50_A5CFS8 Transcriptional regulator n=1 Tax=uncultured mar... 79 5e-13 UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanel... 79 5e-13 UniRef50_A3UJQ2 Transcriptional regulator n=1 Tax=Oceanicaulis a... 78 8e-13 UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwe... 78 1e-12 UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=... 77 1e-12 UniRef50_Q12S47 Transcriptional regulatory protein-like protein ... 77 1e-12 UniRef50_A3D2S0 Transcriptional regulator, CadC n=3 Tax=Shewanel... 77 2e-12 UniRef50_A5P8P2 Transcription activator ToxR n=1 Tax=Erythrobact... 76 3e-12 UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, ... 76 3e-12 UniRef50_Q087B1 Lysine decarboxylase transcriptional regulator, ... 75 6e-12 UniRef50_B1KPW9 Transcriptional regulator, CadC n=1 Tax=Shewanel... 74 1e-11 UniRef50_Q0AQA4 Lysine decarboxylase transcriptional regulator, ... 74 1e-11 UniRef50_Q12RS3 Transcriptional regulatory protein-like protein ... 74 2e-11 UniRef50_B2SNG2 Transcriptional regulatory protein, C terminal n... 73 2e-11 UniRef50_Q0HTC3 Lysine decarboxylase transcriptional regulator, ... 73 3e-11 UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingom... 72 4e-11 UniRef50_B1KK09 Transcriptional regulator, CadC n=1 Tax=Shewanel... 72 4e-11 UniRef50_B4RU42 Transcriptional regulator n=2 Tax=Alteromonas ma... 72 4e-11 UniRef50_A3WEA4 Adenylate cyclase n=1 Tax=Erythrobacter sp. NAP1... 71 8e-11 UniRef50_A4CDV0 Putative transcriptional regulator n=1 Tax=Pseud... 71 9e-11 UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax... 71 1e-10 UniRef50_B8ESY3 Transcriptional regulator, winged helix family n... 70 2e-10 UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiell... 70 2e-10 UniRef50_A0Y3K5 DNA-binding transcriptional activator n=1 Tax=Al... 70 2e-10 UniRef50_Q2Y9M2 Transcriptional regulator, putative ATPase, wing... 70 3e-10 UniRef50_A3VIF4 Adenylate/guanylate cyclase/hydrolase, alpha/bet... 69 3e-10 UniRef50_C3KKU6 Putative transcriptional regulator n=1 Tax=Rhizo... 69 4e-10 UniRef50_Q8EG94 Transcriptional regulator, putative n=1 Tax=Shew... 69 4e-10 UniRef50_B2G959 Two-component response regulator n=13 Tax=Lactob... 69 6e-10 UniRef50_Q1Z6E8 Transcriptional activator of cad operon n=1 Tax=... 68 6e-10 UniRef50_B1KFP5 Transcriptional regulator, CadC n=1 Tax=Shewanel... 68 1e-09 UniRef50_Q12QP4 Transcriptional regulatory protein-like protein ... 67 1e-09 UniRef50_C7RJ06 Transcriptional regulator, putative ATPase, wing... 67 2e-09 UniRef50_UPI000190D045 DNA-binding transcriptional activator Cad... 67 2e-09 UniRef50_C1F3P9 Transcriptional regulator, putative n=1 Tax=Acid... 67 2e-09 UniRef50_C7R8I4 Transcriptional regulator, CadC n=1 Tax=Kangiell... 66 2e-09 UniRef50_Q89GS8 Transcriptional regulator n=1 Tax=Bradyrhizobium... 66 3e-09 UniRef50_D1TLZ3 Transcriptional regulator n=3 Tax=Burkholderia R... 66 3e-09 UniRef50_Q2SHD7 Probable transcriptional regulator n=1 Tax=Hahel... 66 3e-09 UniRef50_B8CRI4 Transcriptional regulatory protein n=1 Tax=Shewa... 66 3e-09 UniRef50_A4YSP3 Putative uncharacterized protein n=1 Tax=Bradyrh... 66 4e-09 UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella c... 65 5e-09 UniRef50_Q48IP6 Transcriptional regulator, LuxR family n=1 Tax=P... 65 9e-09 UniRef50_B4R7X2 Putative transcriptional regulator n=1 Tax=Pheny... 65 9e-09 UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacter... 65 9e-09 UniRef50_A1SYN7 Cholera toxin transcriptional activator-like pro... 64 1e-08 UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH 64 1e-08 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 64 2e-08 UniRef50_B5WFU1 Transcriptional regulator, winged helix family n... 64 2e-08 UniRef50_P15795 Cholera toxin transcriptional activator n=121 Ta... 64 2e-08 UniRef50_B2JV11 Transcriptional regulator, winged helix family n... 64 2e-08 UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Gr... 64 2e-08 UniRef50_B2T985 Transcriptional regulator, winged helix family n... 64 2e-08 UniRef50_C7E4R8 Transcriptional regulator n=1 Tax=Pantoea stewar... 63 3e-08 UniRef50_A5CFS9 Putative uncharacterized protein n=1 Tax=uncultu... 63 3e-08 UniRef50_Q5E5T5 Transcriptional regulatory protein n=1 Tax=Vibri... 63 3e-08 UniRef50_A4CCM5 N-terminal winged-HTH domain fused to TolB-like ... 63 3e-08 UniRef50_Q0BZ36 TPR domain protein n=1 Tax=Hyphomonas neptunium ... 63 3e-08 UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseud... 62 4e-08 UniRef50_B1YN09 Transcriptional regulator, winged helix family n... 62 4e-08 UniRef50_Q1M6Q3 Putative adenylate cyclase/transcriptional regul... 62 5e-08 UniRef50_Q98JB4 Adenylate cyclase n=1 Tax=Mesorhizobium loti Rep... 62 5e-08 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 62 7e-08 UniRef50_B7NQ98 Putative Transcriptional regulator n=3 Tax=Esche... 62 8e-08 UniRef50_C6XRJ0 Transcriptional regulator, CadC n=1 Tax=Hirschia... 61 9e-08 UniRef50_C5SN08 Transcriptional regulator, CadC n=1 Tax=Asticcac... 61 9e-08 UniRef50_Q3KE15 Putative transcriptional regulator n=3 Tax=Prote... 61 9e-08 UniRef50_D0XZV6 Transcriptional regulator, CadC n=1 Tax=Caulobac... 61 1e-07 UniRef50_D1TLX7 Transcriptional regulator, winged helix family n... 60 2e-07 UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vi... 60 2e-07 UniRef50_Q15YV6 Lysine decarboxylase transcriptional regulator, ... 60 2e-07 UniRef50_A0Y4N9 Transcriptional regulator, CadC n=1 Tax=Alteromo... 60 3e-07 UniRef50_UPI0001AF360D LuxR family transcriptional regulator n=3... 59 3e-07 UniRef50_A4C973 Putative transcriptional regulator n=1 Tax=Pseud... 59 4e-07 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 59 4e-07 UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mol... 59 4e-07 UniRef50_B7VJ79 Transcriptional regulator n=6 Tax=Vibrionaceae R... 59 4e-07 UniRef50_A4CDM3 Putative transcriptional regulator n=1 Tax=Pseud... 59 4e-07 UniRef50_Q89ML1 Blr4182 protein n=1 Tax=Bradyrhizobium japonicum... 59 5e-07 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 59 5e-07 UniRef50_B0SVQ0 Transcriptional regulator, winged helix family n... 59 5e-07 UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepI... 59 5e-07 UniRef50_B8CUZ5 Transcriptional regulatory protein n=1 Tax=Shewa... 59 6e-07 UniRef50_A4AL32 Putative two-component system response regulator... 59 6e-07 UniRef50_Q3KEV6 Putative transcriptional regulator n=1 Tax=Pseud... 59 6e-07 UniRef50_Q022K7 Transcriptional regulator, putative ATPase, wing... 58 8e-07 UniRef50_A3SM14 Adenylate/guanylate cyclase/hydrolase, alpha/bet... 58 9e-07 UniRef50_A8AKG2 Putative uncharacterized protein n=2 Tax=Enterob... 58 9e-07 UniRef50_Q89GU0 Blr6255 protein n=1 Tax=Bradyrhizobium japonicum... 57 1e-06 UniRef50_B0RLY2 Putative membrane protein n=1 Tax=Xanthomonas ca... 57 1e-06 UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersini... 57 1e-06 UniRef50_A4XNQ3 Transcriptional regulator, CadC n=1 Tax=Pseudomo... 57 1e-06 UniRef50_Q28RN5 Lysine decarboxylase transcriptional regulator, ... 57 1e-06 UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein ... 57 1e-06 UniRef50_A7H060 Two-component regulator n=29 Tax=Campylobacteral... 57 2e-06 UniRef50_Q89XL4 Transcriptional regulator n=1 Tax=Bradyrhizobium... 57 2e-06 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 57 2e-06 UniRef50_A2SGK5 ATPase-like protein n=1 Tax=Methylibium petrolei... 57 2e-06 UniRef50_A7FEG6 Transcriptional regulator n=26 Tax=Yersinia RepI... 57 2e-06 UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax... 57 2e-06 UniRef50_B1M5U0 Transcriptional regulator domain protein n=3 Tax... 56 3e-06 UniRef50_Q1IHU2 Lysine decarboxylase transcriptional regulator, ... 56 3e-06 UniRef50_A7K1J9 DNA-binding response regulator n=13 Tax=Vibriona... 56 3e-06 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 56 3e-06 UniRef50_A4C7M7 TolB domain protein n=1 Tax=Pseudoalteromonas tu... 56 3e-06 UniRef50_C4K826 Putative regulatory membrane protein n=1 Tax=Can... 56 3e-06 UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium ... 56 4e-06 UniRef50_C4UIA8 Possible regulatory protein n=1 Tax=Yersinia ruc... 56 4e-06 UniRef50_A0KZR6 Transcriptional regulator domain protein n=4 Tax... 56 4e-06 UniRef50_B1ZTA9 Transcriptional regulator, CadC n=1 Tax=Opitutus... 56 4e-06 UniRef50_Q01QR8 Transcriptional regulator, CadC n=1 Tax=Candidat... 56 4e-06 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 55 4e-06 UniRef50_A4JSN6 Transcriptional regulator, winged helix family n... 55 5e-06 UniRef50_Q7MF28 Putative uncharacterized protein VVA0492 n=1 Tax... 55 5e-06 UniRef50_B9BNS9 Transcriptional regulator n=2 Tax=Burkholderia m... 55 5e-06 UniRef50_C2EBW1 Two-component response regulator n=1 Tax=Lactoba... 55 5e-06 UniRef50_B1KA17 Transcriptional regulator, winged helix family n... 55 5e-06 UniRef50_B2TAW9 Transcriptional regulator, winged helix family n... 55 6e-06 UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobact... 55 6e-06 UniRef50_C8SMB1 Transcriptional regulator domain protein n=1 Tax... 55 6e-06 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 55 7e-06 UniRef50_Q1ZVU4 Putative uncharacterized protein n=1 Tax=Photoba... 55 7e-06 UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum... 55 7e-06 UniRef50_B7VIT9 Putative uncharacterized protein n=8 Tax=Vibrion... 55 8e-06 UniRef50_C4UZF9 Transcriptional regulator n=2 Tax=Yersinia RepID... 55 9e-06 UniRef50_Q0C2S9 Serine/threonine protein kinase n=2 Tax=Alphapro... 55 9e-06 UniRef50_Q5QWN9 N-terminal winged-HTH domain fused to TolB-like ... 55 9e-06 UniRef50_A1TAL1 Transcriptional regulator, CadC n=7 Tax=Mycobact... 54 1e-05 UniRef50_Q2NVH3 Putative uncharacterized protein n=1 Tax=Sodalis... 54 1e-05 UniRef50_Q1MK68 Putative adenylate cyclase n=1 Tax=Rhizobium leg... 54 1e-05 UniRef50_A8IBN1 DNA-binding response regulator n=1 Tax=Azorhizob... 54 1e-05 UniRef50_UPI00017F4CF5 two-component response regulator n=2 Tax=... 54 1e-05 UniRef50_A6BKE3 Putative uncharacterized protein n=3 Tax=Clostri... 54 1e-05 UniRef50_C8X3Y5 Two component transcriptional regulator, winged ... 54 1e-05 UniRef50_C6IXU0 Transcriptional regulator domain-containing prot... 54 1e-05 UniRef50_B1J1E8 Two component transcriptional regulator, LuxR fa... 54 1e-05 UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vib... 54 1e-05 UniRef50_C7QIF5 Uroporphyrinogen III synthase HEM4 n=1 Tax=Caten... 54 1e-05 UniRef50_Q3AVF0 Response regulator receiver domain protein (CheY... 54 2e-05 UniRef50_Q9RFS1 Transmembrane regulatory protein ToxR (Fragment)... 54 2e-05 UniRef50_B7RJ24 Putative regulatory protein, possibly two-compon... 54 2e-05 UniRef50_D0WLW8 DNA-binding response regulator RegX3 n=1 Tax=Act... 54 2e-05 UniRef50_Q39G50 Transcriptional regulator, winged helix family n... 54 2e-05 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 54 2e-05 UniRef50_Q1MK13 Putative transcriptional regulator n=1 Tax=Rhizo... 54 2e-05 UniRef50_A2W5F3 Putative uncharacterized protein n=1 Tax=Burkhol... 54 2e-05 UniRef50_C1F5C9 Putative transcriptional regulatory protein n=1 ... 54 2e-05 UniRef50_B9XFI9 Two component transcriptional regulator, winged ... 53 2e-05 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 53 2e-05 UniRef50_Q01WH4 Transcriptional regulator, CadC n=1 Tax=Candidat... 53 2e-05 UniRef50_A4EHZ3 Integral membrane protein-like n=1 Tax=Roseobact... 53 2e-05 UniRef50_C4U9W3 Transcriptional regulator n=1 Tax=Yersinia aldov... 53 2e-05 UniRef50_Q251C7 Putative uncharacterized protein n=1 Tax=Desulfi... 53 2e-05 UniRef50_Q1J251 Two component transcriptional regulator PhoB n=5... 53 3e-05 UniRef50_A8MLN3 Two component transcriptional regulator, winged ... 53 3e-05 UniRef50_D0AFB3 Putative uncharacterized protein n=4 Tax=Firmicu... 53 3e-05 UniRef50_Q1IIR6 Transcriptional regulatory protein-like n=1 Tax=... 53 3e-05 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 53 3e-05 UniRef50_UPI0001C424C1 hypothetical protein BpOF4_12950 n=1 Tax=... 53 3e-05 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 53 3e-05 UniRef50_B5ZTP7 Transcriptional regulator, CadC n=1 Tax=Rhizobiu... 53 4e-05 UniRef50_C6JFQ6 Putative uncharacterized protein n=1 Tax=Ruminoc... 53 4e-05 UniRef50_B5ZPU5 Transcriptional regulator domain protein n=11 Ta... 52 4e-05 UniRef50_C1A8B6 OmpR family two-component response regulator n=1... 52 4e-05 UniRef50_D1TNN3 Transcriptional regulator, winged helix family n... 52 4e-05 UniRef50_C4IFN3 Transcriptional regulator n=15 Tax=Bacteria RepI... 52 4e-05 UniRef50_B4CVJ4 Transcriptional regulator, CadC n=1 Tax=Chthonio... 52 5e-05 UniRef50_C5CZM5 Transcriptional regulator, winged helix family n... 52 5e-05 UniRef50_C5D0W4 Transcriptional regulator, CadC n=1 Tax=Variovor... 52 5e-05 UniRef50_C5AMA9 Transcriptional regulator, winged helix family p... 52 6e-05 UniRef50_B0UQ98 Transcriptional regulator domain protein n=4 Tax... 52 6e-05 UniRef50_A4X1M5 Two component transcriptional regulator, winged ... 52 6e-05 UniRef50_Q28L26 Transcriptional regulatory protein-like protein ... 52 6e-05 UniRef50_C9NME3 Putative transcriptional activator ToxR n=1 Tax=... 52 6e-05 UniRef50_UPI00019732E7 DNA-binding response regulator n=1 Tax=Cl... 52 7e-05 UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bact... 52 7e-05 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 52 8e-05 UniRef50_A5L7Z6 Putative uncharacterized protein n=1 Tax=Vibrion... 51 8e-05 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 51 8e-05 UniRef50_D2T7N3 Probable regulatory protein embR n=3 Tax=Erwinia... 51 9e-05 UniRef50_C7BJM7 Putative uncharacterized protein n=1 Tax=Photorh... 51 9e-05 UniRef50_B7VRN4 Putative uncharacterized protein n=2 Tax=Vibrio ... 51 9e-05 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 51 1e-04 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 51 1e-04 UniRef50_Q2SFI0 FOG: TPR repeat n=1 Tax=Hahella chejuensis KCTC ... 51 1e-04 UniRef50_A3PUD7 Two component transcriptional regulator, winged ... 51 1e-04 UniRef50_Q5SMC3 Response regulator n=4 Tax=Deinococci RepID=Q5SM... 51 1e-04 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 51 1e-04 UniRef50_C8S437 Transcriptional regulator, CadC n=1 Tax=Rhodobac... 51 1e-04 UniRef50_Q488W3 DNA-binding response regulator n=3 Tax=Alteromon... 51 1e-04 UniRef50_C2E0K8 Response regulator PhoP n=9 Tax=Lactobacillus Re... 51 1e-04 UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Ta... 51 1e-04 UniRef50_A6ULB6 Transcriptional regulator domain protein n=1 Tax... 51 1e-04 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 51 1e-04 UniRef50_Q1ITK1 Lysine decarboxylase transcriptional regulator, ... 51 1e-04 UniRef50_C5AMC0 Transcriptional regulator, winged helix family p... 51 1e-04 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 51 1e-04 UniRef50_C6D5Y8 Putative two component transcriptional regulator... 51 1e-04 UniRef50_Q1NA75 DNA-binding response regulator n=3 Tax=Alphaprot... 50 1e-04 UniRef50_D2R142 Two component transcriptional regulator, winged ... 50 1e-04 UniRef50_B1KN36 Transcriptional regulator, CadC n=1 Tax=Shewanel... 50 2e-04 UniRef50_Q12IZ6 Transcriptional regulatory protein-like protein ... 50 2e-04 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 50 2e-04 UniRef50_B1T3K8 Transcriptional regulator, winged helix family n... 50 2e-04 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 50 2e-04 UniRef50_Q1AYG8 Two component transcriptional regulator, winged ... 50 2e-04 UniRef50_C9NM06 Putative uncharacterized protein n=1 Tax=Vibrio ... 50 2e-04 UniRef50_C1XV31 Response regulator with CheY-like receiver domai... 50 2e-04 UniRef50_C6AYW7 Transcriptional regulator, winged helix family n... 50 2e-04 UniRef50_B5ET33 Hypothetical transcriptional regulatory protein ... 50 2e-04 UniRef50_D1BJH9 Response regulator with CheY-like receiver domai... 50 2e-04 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 50 2e-04 UniRef50_B1JFX2 Two component transcriptional regulator, winged ... 50 2e-04 UniRef50_P0A5Z5 DNA-binding response regulator mtrA n=76 Tax=Bac... 50 2e-04 UniRef50_Q0ANH0 Lysine decarboxylase transcriptional regulator, ... 50 2e-04 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 50 2e-04 UniRef50_B1KD58 Putative transcriptional regulator, CadC n=1 Tax... 50 2e-04 UniRef50_A8FS89 Transcriptional regulator domain protein n=5 Tax... 50 2e-04 UniRef50_Q1QIX2 Lysine decarboxylase transcriptional regulator, ... 50 2e-04 UniRef50_A7BB43 Putative uncharacterized protein n=2 Tax=Actinom... 50 3e-04 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 50 3e-04 UniRef50_A0KH62 Transcriptional activator protein n=1 Tax=Aeromo... 50 3e-04 UniRef50_D2TJ93 Lateral flagellar transmembrane regulator n=1 Ta... 50 3e-04 UniRef50_A5FVA6 Two component transcriptional regulator, winged ... 50 3e-04 UniRef50_C6AVM9 Response regulator receiver protein n=1 Tax=Rhiz... 50 3e-04 UniRef50_B0G7M7 Putative uncharacterized protein n=2 Tax=Clostri... 50 3e-04 UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC... 50 3e-04 UniRef50_B2U992 Two component transcriptional regulator, winged ... 50 3e-04 UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n... 49 3e-04 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 49 3e-04 UniRef50_Q3Z7F8 Transcriptional regulator n=5 Tax=Dehalococcoide... 49 3e-04 >UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enterobacteriaceae RepID=CADC_ECOLI Length = 512 Score = 1056 bits (2732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/512 (100%), Positives = 512/512 (100%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR Sbjct: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP Sbjct: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS Sbjct: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH Sbjct: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL 300 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL Sbjct: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL 300 Query: 301 AIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASE 360 AIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASE Sbjct: 301 AIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASE 360 Query: 361 LLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY 420 LLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY Sbjct: 361 LLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY 420 Query: 421 QIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 480 QIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR Sbjct: 421 QIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 480 Query: 481 PGANTLYWIENGIFQTSVPYVVPYLDKFLASE 512 PGANTLYWIENGIFQTSVPYVVPYLDKFLASE Sbjct: 481 PGANTLYWIENGIFQTSVPYVVPYLDKFLASE 512 >UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobacteriaceae RepID=C5B7S6_EDWI9 Length = 548 Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust. Identities = 269/542 (49%), Positives = 348/542 (64%), Gaps = 39/542 (7%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 MQ+ RVGEWLV + N+I+R GR L LEPRLID+L +FA H VLSRDELIDNVWKR Sbjct: 1 MQEQTFRVGEWLVLAADNKITREGRVLVLEPRLIDMLSYFAHHPDMVLSRDELIDNVWKR 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLS-- 118 +IVTNHVVTQ ISELRK LKD ++P YI TVPKRGYKL+ VIW EE E+++ + Sbjct: 61 NIVTNHVVTQCISELRKYLKDGRPEAPEYIVTVPKRGYKLVESVIWCGEESLEQLVAAVL 120 Query: 119 -----SPPPIPEAVPATDSPSHSLNIQNTA-TPP-------------------------- 146 S P EAV + S S + ++ A TPP Sbjct: 121 PAETPSFPAAAEAVTPSGSASPAFAAESGAVTPPPASTPLLMAQPASSCDTPVMPPTSAL 180 Query: 147 --EQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMV 204 + +P + ++ WVW F ++L +C A V + R P+ +LLNPRDIDI + Sbjct: 181 TADAAPTPRRLRSSSWVWVAFWVTLALCAAFVGLAVFSHRGPVVSHPMLLNPRDIDIRIQ 240 Query: 205 NKS-CNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVN 263 + C++W++ QLSY IG+ + +A LNT+STF+VHD+ NYN SSSGK+L I FVN Sbjct: 241 GGNRCSNWTN--QLSYVIGLSEDLAQGLNTYSTFLVHDQTNYNYGGKSSSGKSLYIEFVN 298 Query: 264 QRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQ 323 QR YRAQQCF+S++LVDNAD ML+KRY IT N L++Q D + S+ L P + Sbjct: 299 QRHYRAQQCFLSVRLVDNADNLVMLEKRYFITPDNLLSVQKDFINSIFTVLKVSMPPSLD 358 Query: 324 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 383 + + ++P +L +Y AH LL GD +SLN+AS+LL +I+Q P+F YA+AEKALVD Sbjct: 359 KRYETLMPTHSQVLQQYYHAHQLLLQGDSESLNQASQLLTQIIQQDPDFVYAKAEKALVD 418 Query: 384 IVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 443 I+ +S PL QL AL EI+++ P L II QI V L +GK ++ AIN G Sbjct: 419 ILLNSYQPLSAPQLTALRQEINDVEHNPLLQGTPIIQQIYTVDYLGQGKVAQACSAINKG 478 Query: 444 IDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVP 503 IDLEMSWLNYVLLGKVYE+KG N +AADAY+TAFNLRPG NTL WI+NG+FQT++ V P Sbjct: 479 IDLEMSWLNYVLLGKVYELKGQNNQAADAYITAFNLRPGHNTLDWIKNGVFQTNIERVAP 538 Query: 504 YL 505 YL Sbjct: 539 YL 540 >UniRef50_Q6GZK0 Cad operon transcriptional activator (Fragment) n=9 Tax=Enterobacteriaceae RepID=Q6GZK0_ECOLX Length = 97 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/97 (100%), Positives = 97/97 (100%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR Sbjct: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRG 97 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRG Sbjct: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRG 97 >UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax=Vibrio RepID=C3NSU2_VIBCJ Length = 519 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 134/511 (26%), Positives = 247/511 (48%), Gaps = 36/511 (7%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66 ++ +W++ N++ R R+++ EPRLI+LL F A+H+GEV R+ELI +VW +IVT+ Sbjct: 7 QINDWVLCIDENKLYRQDREVSAEPRLINLLHFLAEHAGEVFGREELIQHVWDGAIVTDQ 66 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV--------PVIWYSEEE-GEEIML 117 VVTQSI ELRK L+D E++ Y+ TVPKRGYKL+ P + EE ++ L Sbjct: 67 VVTQSIFELRKLLRDGREENLSYVVTVPKRGYKLVANVQRLDGNPYVSRQEESTASDVCL 126 Query: 118 SSP-PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLS---LGICV 173 + + +AVP P+ L A Q P KS + W LL+ +G+ + Sbjct: 127 ADDIDDVEDAVPEIVFPAGPL---TRAVCQSQQPKKSSK-PNVSRWRLNLLNAIWIGLVI 182 Query: 174 ALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSY--AIGVGDLVATSL 231 + F ++ S+ RI + +D +++ L++ A G+ + L Sbjct: 183 VAMGFFTVQ----QSQVRI---TQVVDTHLIEFKFQDGFHAQALTHELADGIAQKLMADL 235 Query: 232 NTFSTF-MVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDK 290 S + ++ K Y+ GK++ + +Q + F+ ++L +N+ + + + Sbjct: 236 TQVSDYRVILGKTAYS--SGILPGKSIMVRVNDQDGHE----FLDLELKNNSSDAVLFSR 289 Query: 291 RYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHG 350 +Y + + + ++ + +AL P ++ + L P + A L + +A+ YL Sbjct: 290 QYPLDSQHLASVLKSAEWDVMQALKIPNAEQQAQRLLVDFPRQPAALGLYVRANHYLNVA 349 Query: 351 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP---LDEKQLAALNTEIDNI 407 D + LL ++++ P+ Y +AE + V+ + P L++ ++ L+ ++ + Sbjct: 350 DRPQFQKGIYLLEQVLKLEPDNHYVQAELLIAYHVQQAISPDQALNQDRMLVLSEQLQQV 409 Query: 408 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNR 467 P+ IY+ A+ A V+ + + + + L S L+YVL GK E+KG Sbjct: 410 SYSPQAVVQPRIYEALALQATVENQVETATHYLAQAQGLRESVLSYVLQGKHAELKGDLD 469 Query: 468 EAADAYLTAFNLRPGANTLYWIENGIFQTSV 498 A+DAY AF + T EN +F +++ Sbjct: 470 GASDAYSEAFYMDTSLETYLLCENLVFHSNL 500 >UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 Tax=Vibrionaceae RepID=Q5E341_VIBF1 Length = 541 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 135/538 (25%), Positives = 241/538 (44%), Gaps = 55/538 (10%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66 ++ +W + N++ R R++++EPRLI+LL F AQHSGEV RDELI +VW + VT+ Sbjct: 7 QINDWTLVIEENKLYRQDREVSVEPRLINLLRFLAQHSGEVFCRDELIKHVWDGAFVTDQ 66 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV--------------PVIWYSEEEG 112 VVTQSI ELRK L+D D+ Y+ TVPKRGYKL+ P ++ E Sbjct: 67 VVTQSIFELRKVLRDGRLDNTRYLVTVPKRGYKLVAETKQIRLEDTPYWKPCDTFTSTEA 126 Query: 113 EE-----IMLSSPPPIPE-------AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFW 160 +E + L++ E + PA NI N + ++ +S F W Sbjct: 127 DENQNHNVELNTEEQEKEQDETAQLSFPAGPLTRAVTNISNQVSNEKKKQGESFSFLHRW 186 Query: 161 ---VWFFFLLSLGICVAL-VAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCN-SWSSPY 215 + FFL+ + I V V + T + + +D +++ + + S +S Sbjct: 187 KLLAFDFFLVGVLIAVIFSVTYQQTTTHI----------TKAVDTDLIEFTYHASRNSNN 236 Query: 216 QLSY-AIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQ-QCF 273 + Y A G+ + L + + V +++ + + L VN R Q + + Sbjct: 237 ETEYLADGISQKLMADLASVGHYRVQ------LNKTAFTTGILPGKAVNVRVEEQQNKTY 290 Query: 274 MSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHR 333 + ++ N + ++Y++TN N + + L +AL ++ L LP Sbjct: 291 LDVEYRSNISNRVLFSRQYLMTNANLEHVLRQSSQDLMRALGVQASEQDMNRLMLGLPKE 350 Query: 334 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP-- 391 LL +A+ ++ D K+ + +LL I + P Y +E + + +P Sbjct: 351 HGLLEMLVRANHFINQTDQKNFEKGIDLLENIALAEPNNDYVLSELYIAYNAYSALNPEL 410 Query: 392 -LDEK--QLAALNTEIDNIVTLPELNNL-SIIYQIKAVSALVKGKTDESYQAINTGIDLE 447 LDE ++ L+ ++ L ++ L S IY+ A+ A+ + +++ +N Sbjct: 411 ELDENTAKIEKLSQDLQARYALSDVGVLPSRIYEALAMIAIKQDNKEDARAYLNLAFKNR 470 Query: 448 MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYL 505 S +Y+L GK+ E+ G +A ++Y AF + T EN F + + V ++ Sbjct: 471 ESAFSYILEGKLAELDGDLDQAGESYSKAFFMDTSLETYMLAENLAFYSDLETVAYFM 528 >UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EKJ8_ALISL Length = 542 Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 136/537 (25%), Positives = 234/537 (43%), Gaps = 51/537 (9%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66 ++ +W + N++ R R++++EPRL++LL F AQHSGEV RDELI +VW + VT+ Sbjct: 7 QINDWTLVIEENKLYRQDREVSVEPRLVNLLRFLAQHSGEVFCRDELIQHVWDGAFVTDQ 66 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGE--------EIMLS 118 VVTQSI ELRK L+D D+ Y+ TVPKRGYKL+ + EE E + ++S Sbjct: 67 VVTQSIFELRKILRDGRLDNARYLVTVPKRGYKLVADTQLVNFEETEFWKPCDYSKTVIS 126 Query: 119 SP-----------PPIPEAVPATDS----PSHSLNIQNTATPPEQSPVKSKR---FTTFW 160 S + E V T+ PS L T + K+K+ F +F Sbjct: 127 SALNYAESGHAAHELVDEKVTTTEHDLSFPSGPLTRAITTISKDVEKEKNKQGASFNSFH 186 Query: 161 VWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLS-- 218 W + L+A + T + + I + IDI+++ + ++ + + Sbjct: 187 RWKLLAFDAFLVCILIAV-IMSTTYQHTSTHI---TKAIDIDLIEFTFHASRNQKDETEF 242 Query: 219 YAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQ-QCFMSIK 277 A G+ + L + + V +D+ + + L V+ R Q + ++ ++ Sbjct: 243 LADGISQKLMADLASVGNYRVQ------LDKTAFTTGILPGKAVDVRVEEQQNKTYLDVE 296 Query: 278 LVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALL 337 N + ++Y +T N + L AL + + L LP LL Sbjct: 297 YRSNTSNKVLFSRQYRMTPSNLERVLRQSSFDLMNALGVTVSEAQMDELMIGLPKEEGLL 356 Query: 338 TNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQL 397 QA+ Y+ D + + LL +I P+ Y AE + + +P E +L Sbjct: 357 EVLIQANHYINQPDPRLFEQGIRLLEKISSEEPDNGYILAELYIAYNAFSALNP--ELEL 414 Query: 398 AALNTEIDNI---------VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 448 + +IDN+ V E+ + IY+ A++A+ + + + + + Sbjct: 415 SDNTMKIDNLSQDLVGKYGVATDEIWP-ARIYEALAMNAIKQDDKEAAQKYLTHAFARRE 473 Query: 449 SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYL 505 S +Y+L GK+ E+ G +A DAY AF + T EN F + + V ++ Sbjct: 474 SAFSYILEGKLAELNGNLDKAGDAYSRAFFMDTSLETYMLSENLAFYSDLETVAYFM 530 >UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas RepID=A4SQG5_AERS4 Length = 511 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 126/528 (23%), Positives = 218/528 (41%), Gaps = 52/528 (9%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + V + +W + N + R R++ LEPRL++LL F A H+G V RD LI VW Sbjct: 1 MSESVFEIHDWTLRVDDNMLCRPDREVYLEPRLVNLLRFLACHTGTVFGRDALIKEVWDG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 + VT+ VVTQSI ELRK LKD D+ YI TVPKRGYKL+ V + ++++ Sbjct: 61 AEVTDQVVTQSIFELRKILKDGRFDATDYIVTVPKRGYKLVASV---RPLQVVSLLMADE 117 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWV---------WFFFLLSLGI 171 P+P P S + P +P + T W + + Sbjct: 118 QPVPAVNPTLSDLSPPATADDDDALPNAAPFPAGPLTRAISAHAKDARSRWKMVSFDIFV 177 Query: 172 CVALVAF-SSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATS 230 V LVA S L + + +L+P + + ++ + + + D + + Sbjct: 178 AVILVAIVSMLSYQHASPQVHTMLDPNLLVFRFHSGMDDNNEN-------VRLADGITRA 230 Query: 231 LNTFSTFMVHDKINY---NIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTM 287 L + ++ Y N+ GK LS+ RQ R ++ ++ + + Sbjct: 231 LMGEVAAVTPLRVQYGATNLMGGILPGKELSVRV--SRQPRG--TYLDLEYRNINTNRVL 286 Query: 288 LDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRG-----ALLTNFYQ 342 +Y ++ A+ + L +AL+QP +LP G L + Sbjct: 287 FSHQYQLSRHKVHAVLQASSQDLLRALDQP----------DVLPGMGWPTDDTSLMAMME 336 Query: 343 AHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEK-----ALVDIVRHSQHPLDEKQL 397 A Y+ D +L R LL + P+ AE+ AL + S+ + L Sbjct: 337 AQYYINSQDPVALKRGIALLDNSLFVQPDQPLLLAERYLAGEALATLAGKSE----SEHL 392 Query: 398 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLG 457 + T + ++V ++ + +++ + A++ + ++ Q + S L Y+L G Sbjct: 393 MGIGTHLASVVQ-SDVVVPARVWEALTLQAILNNQPQQASQLLAQAASRGRSVLYYILQG 451 Query: 458 KVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYL 505 K+ E+ G A DAY AF + T + F +++ + P L Sbjct: 452 KLAELDGRPEAAGDAYSQAFLMEATEQTYLLCQQLGFYSNMETLTPAL 499 >UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobacterium angustum S14 RepID=Q1ZPR1_PHOAS Length = 481 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 128/514 (24%), Positives = 231/514 (44%), Gaps = 64/514 (12%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66 ++ + L+ + N + ++G+ LEPR+ LL F AQ+ G V +RDELID VW ++V++ Sbjct: 7 KINDCLLITTENSLKKSGKTYILEPRITKLLSFLAQNQGIVFTRDELIDEVWDGAVVSDQ 66 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV--IWYSEEEG---EEIMLSSPP 121 VVTQSI ELRK LK DED +I T+PKRGYKL V I+ G EE S+ Sbjct: 67 VVTQSIFELRKILKKLDEDH--WIITIPKRGYKLDADVQQIYIDPNTGFKLEEFHSSNEH 124 Query: 122 P-----IPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALV 176 + A PA N P S S W++ +LS+ + + Sbjct: 125 TNDNSNLGTAFPAGPMTRAFSKPDNDIPPASVSNKISNLMLNHWLFDVGILSMLVLTLVF 184 Query: 177 AFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFST 236 A + + P+ + L NPR I+I + + S +S + ++ ++L +++ Sbjct: 185 ASWANNDNAPI---KDLKNPRQINIEITSSSNQLYS----------IAKMIESTLFSYTD 231 Query: 237 FMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITN 296 + ++ S +GKTLS+ + Q + I L +N + K ++ + Sbjct: 232 YTS------SLHPNSEAGKTLSLYISDNNQ-------LHIDLYNNISHRSDFKKSLLLQS 278 Query: 297 GNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYL----LHGDD 352 N LL L + L ++ ++T+ + YL L D+ Sbjct: 279 DKLYTSLNHLLNELIQTLTHD---------HQVTVTNAPIITDSTLLYKYLSLPDLIDDE 329 Query: 353 KSLNRASEL-LGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAA---LNTEIDNIV 408 +N++ + +++ +SP+ +Y A++ + + + LD K+ + +N D + Sbjct: 330 GQVNKSYLTDINKLILNSPKNSYLLAKRYIGYAIILT---LDNKETSMPNLMNYARDLVK 386 Query: 409 TLPELNNL----SIIYQIKAVSALVKGKTD--ESYQAINTGIDLEMSWLNYVLLGKVYEM 462 + N+L S A++ L +G D + Y +++ + S L Y+L GK+ ++ Sbjct: 387 NISLQNSLLSLPSQTLNALALNQLYQGNIDLSQHYLSLSRQQSKQSSALYYILQGKILDI 446 Query: 463 KGMNREAADAYLTAFNLRPGANTLYWIENGIFQT 496 K +++A + Y A L P T +N +F + Sbjct: 447 KNQHKQANENYSIAKYLAPSYETEVLCKNLVFHS 480 >UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CR40_SHEPW Length = 512 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 123/509 (24%), Positives = 230/509 (45%), Gaps = 36/509 (7%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + R+ W P N++ + +++ ++ RL +LL+F + LSRDE+ID+VWK Sbjct: 1 MHKQSYRIDNWFFVPHENRLVLDEQEILIDNRLSNLLLFLCDNPRTTLSRDEIIDHVWKG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 SI+T+ V+TQ+I ELRK LK N++ YI TVPKRGYKL V +E + +L++ Sbjct: 61 SILTDQVITQAIFELRKILKTNNQHLQGYIITVPKRGYKLDTDVEVVNEVKTAPTVLNAA 120 Query: 121 PPIPEA-------VPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICV 173 I E+ A ++ H +N KS RF++ L+++ + V Sbjct: 121 HKIVESNAEQKSNFAAKEATKHKKATENEEPTTAVESAKSVRFSSSLAIVGALIAVAVLV 180 Query: 174 ALVAFSSLDTRLPMSKSRIL---LNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATS 230 V F+ D S ++ L PR I+ ++ N N+ + + V Sbjct: 181 --VFFNRADIGKQPSVEHVVYADLEPRVIEASIDNSLANA-----------SLQNGVIFK 227 Query: 231 LNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDK 290 + + + V+ ++++N + + K LS F+ R+ +++I+ + LD+ Sbjct: 228 VIEYLKYNVNYRVSFNPKDHLIAAKKLS--FIVTRENGID--YVNIEYFNKISNYQHLDR 283 Query: 291 RYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHG 350 +Y I+ + +++ + A N + + + + +P A L +A LH Sbjct: 284 KYPISEKHLKHSIKLMIDDVLDAFNIDIAKSEIDLVLRDMPEEPAALALSLEAIG-TLHS 342 Query: 351 DDKSLNRASELLGEIVQSSPEFTYARAEKALVD--IVRHSQHPLDEKQLAALNTEIDNIV 408 DK + A +LL + ++ P Y + + + I + L + +LN++ + I Sbjct: 343 YDKQFD-AIDLLAKALEIDPTSHYLLSMNYIYNMTIAYLGKSNLSIDSINSLNSDFEQI- 400 Query: 409 TLPELNNLS---IIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGM 465 LP+++ +Y+ A+ AL K E+ Q +N + + Y+L K+ E G Sbjct: 401 -LPQISESPESFKVYEAMALHALSKDLPIEAVQHLNQIPHTHNTIMTYILRAKLAESFGN 459 Query: 466 NREAADAYLTAFNLRPGANTLYWIENGIF 494 A + Y A + L + E+ +F Sbjct: 460 PASAEEFYYQALHESGTPRVLDFAESLLF 488 >UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobacterium profundum 3TCK RepID=Q1YZ13_PHOPR Length = 509 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 114/494 (23%), Positives = 209/494 (42%), Gaps = 32/494 (6%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + ++ W+ PS N+ + R + ++ RL +LL+F QH + SRDELI+ VW Sbjct: 1 MDKKRYKIDNWIFIPSENKCILDERSVVIDNRLSNLLLFLCQHPHQTFSRDELINEVWNG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEE---------- 110 S +T+ V+TQSI ELRK LK N YI T+PKRGYKL V + Sbjct: 61 SFLTDQVITQSIFELRKILKSNQRHPHGYIITIPKRGYKLDAEVEIQDDSLSTEDNNQDT 120 Query: 111 EGEEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLG 170 E +L++ EAV PS + + Q Q + F LL Sbjct: 121 ENAHALLNTAHTNKEAVREVPQPSSAPSYQKEREAAHQRRSSRGKLIAFCC---LLLVAT 177 Query: 171 ICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATS 230 + + ++R ++ L P I++++ K ++ + P IG + + Sbjct: 178 LASLFYYVKTPESRATSTRKFSSLEPSVINVSI--KIDSNTTDPKTTRIEIGAINSLLND 235 Query: 231 LNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDK 290 L F ++ N +GK+L+ + + + ++ ++ +N LD+ Sbjct: 236 LQYNKNF----RLVRNTTPSPVAGKSLTFHLLEENGKK----YIDVEYYNNISNFMHLDR 287 Query: 291 RYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHG 350 +Y+I + L +L +L AL+ PQ+ ++ +P L QA + + Sbjct: 288 KYLINENDLLLTIKQMLTNLLHALHINVPQQTIDSALSEMPTNPQALELTMQAIGIVFNN 347 Query: 351 DDKSLNRASELLGEIVQSSPEFTYARAEKAL--VDIVRHSQHPLDEKQLAALNTEI---- 404 +D +A L + + P+ Y A + + ++ S +D + ALN + Sbjct: 348 NDADKLKALTLYQQALDIEPDNHYLIAMNYIYKMTLLYISNTGIDNDKKEALNNTLMAQK 407 Query: 405 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKG 464 +++ P+ N +++ A+ AL T E+ Q + + + + +L K+ E G Sbjct: 408 SMLLSDPQSNK---VHEAFALLALTTNNTAEAQQHLEKIHYNQQTVMTLLLNAKLAETFG 464 Query: 465 MNREAADAYLTAFN 478 A++ Y A + Sbjct: 465 NTASASEYYYQALH 478 >UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vibrio shilonii AK1 RepID=A6CY17_9VIBR Length = 529 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 128/518 (24%), Positives = 205/518 (39%), Gaps = 81/518 (15%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+ ++ +W+ P ++ +G + ++ RL L F ++ V SRDELI+ VW S Sbjct: 4 QKVQFKIDDWVFYPYEDKFVLHGEDIVIDNRLSKLFHFLCENPDTVFSRDELINEVWNGS 63 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 I+T+ V+TQ+I ELRK LK + YI TVPKRGYKL V E ++ +P Sbjct: 64 ILTDQVITQAIFELRKILKQHGNHPYGYIVTVPKRGYKLDATV---------EKVIETPQ 114 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPE-----------------------------QSPVK 152 P+ E TDS S +++ + PE Q+ K Sbjct: 115 PVIE---TTDSVSEKIDVLRDESAPETTDIVLPEAGASTEVEASAAEPVRQRPAMQTATK 171 Query: 153 SKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSK--------SRILLNPRDIDINMV 204 F W+ LL +GI V +K S + L PR I + + Sbjct: 172 KTGFRKRWIATAALLVIGIGVGASYLHVKQNDRAAAKVIEPIATPSYLSLEPRYIHVILE 231 Query: 205 NKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQ 264 + +G + L T+ + V D P+S + F Sbjct: 232 DGVLRD-------DLKVGFTKKLLELLKTYKDYRV------IYDGPASKVAANELKFAAS 278 Query: 265 RQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQE 324 + R Q ++ I+ V+ G LD++Y +T L+ L + N + + Sbjct: 279 K--RDNQDYIEIEYVNRISGHKHLDRKYRVTEDMLKPSLKKSLDDLLDSFNIEIEKSLIA 336 Query: 325 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 384 L LP+ A + + + H D + RA EL+ E + SP+ Y A + ++ Sbjct: 337 DLVDELPNEAASIESALTSIGASYH--DYTHTRAIELIEEAKKLSPDNPYVVATGYIFNV 394 Query: 385 VRHSQHPLDE--KQLAALNTEIDNIVTLPELNNLSIIYQ----IKAVSALVKGKTDESYQ 438 R P + L LNTE TL + + Q + SA++ DE Q Sbjct: 395 SRMYLDPPHNMAQYLEQLNTE-----TLLKFEQFASANQTTPRVLEASAMMALTNDEPLQ 449 Query: 439 A---INTGIDLEMSWLNYVLLGKVYEMKGMNREAADAY 473 A + T + Y+L K E+ G NR+AA+ + Sbjct: 450 AKTILQTIPHERRTVFFYILNAKASELTG-NRDAAEEF 486 >UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vibrionales RepID=A5L3N2_9GAMM Length = 492 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/147 (40%), Positives = 76/147 (51%), Gaps = 19/147 (12%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 V EWL P+ QI R +T++ RL LL F + G+ +RDELI+NVW I+++ V Sbjct: 10 VDEWLFVPNEGQILFAERTVTIDKRLTKLLEFLCLNPGQTHTRDELINNVWSGMILSDQV 69 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 VTQ++ ELRK LK N + YI TVPKRGYK VI E + + E Sbjct: 70 VTQAVFELRKVLKQNSQQHNSYIITVPKRGYKFEADVIQSKIETDQ---------VAEPE 120 Query: 128 PATDSPSHSLNIQNTATPPEQSPVKSK 154 P+T PS PEQSP K Sbjct: 121 PSTAQPSD----------PEQSPPADK 137 >UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIZ5_ACIBL Length = 717 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 101/183 (55%), Gaps = 20/183 (10%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 + +W V P INQ+ R LEP+++ +LV A HS EVLS++ LI VW + V++ V Sbjct: 7 IADWEVEPQINQVRRQNHSFHLEPKVMQVLVELAAHSDEVLSKEHLIHAVWSDTFVSDDV 66 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 +T+ ISE+R+ L D+D +P I T+PK GY+L+ PV+ ++PP Sbjct: 67 LTRCISEIRRVL-DDDARAPKIIQTIPKSGYRLIAPVV---------FDKAAPP----KN 112 Query: 128 PATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGI-CVALVAFSSLDTRLP 186 +++ + ++ TPP ++ ++ W+ +++G+ +A+V F+ TR P Sbjct: 113 GSSNGSTATVEAATVETPPLKTAETPRKNLAPWI-----VAVGVLAIAVVYFAIRATRPP 167 Query: 187 MSK 189 +++ Sbjct: 168 VAQ 170 >UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KUS7_9GAMM Length = 615 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/143 (39%), Positives = 79/143 (55%), Gaps = 11/143 (7%) Query: 11 WLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQ 70 WL P +++ + + ++ RL LL FF Q+ V SRDELI+ VW SI+T+ V+TQ Sbjct: 13 WLFIPDEDKLIMDNEDVIIDNRLSKLLDFFCQNPNIVFSRDELINEVWNGSILTDQVITQ 72 Query: 71 SISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPAT 130 +I ELRK+LK + S YI TVPKRGYK V V ++ +L PP + V Sbjct: 73 AIFELRKTLKSAERHSMGYIITVPKRGYKFDVEV--------KKTVLVPPPIVTNTVSLA 124 Query: 131 DSPSHSLNIQNTATPPEQSPVKS 153 D+ S+ + + E SPV S Sbjct: 125 DTVSYD---ETVSQEQEASPVSS 144 >UniRef50_Q12IY1 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12IY1_SHEDO Length = 691 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 67/98 (68%), Gaps = 1/98 (1%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66 ++ E+LV P N++ NG Q+ +EP+++++L F QH G+V+SR+ + N+W S+V Sbjct: 5 KLAEYLVYPEHNKLELNGVQVKVEPKIMEILCFLIQHRGQVISREYIATNLWPNSVVGLD 64 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 VVT++I ELRK L D+ ++ P++I T+ K+GY + + Sbjct: 65 VVTRAIFELRKVLNDSAQN-PIFIETIAKKGYCFIYDI 101 >UniRef50_A3UTR1 Transcriptional regulator CadC n=1 Tax=Vibrio splendidus 12B01 RepID=A3UTR1_VIBSP Length = 652 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/94 (48%), Positives = 60/94 (63%) Query: 11 WLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQ 70 WL P +++ N + ++ RL LL FF Q+ V SRDELI+ VW SI+T+ V+TQ Sbjct: 13 WLFIPDEDKLIMNDEDVIIDNRLSKLLNFFCQNPKIVFSRDELINEVWNGSILTDQVITQ 72 Query: 71 SISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 +I ELRK LK + S +I TVPKRGYKL V V Sbjct: 73 AIFELRKILKAAERHSMGHIITVPKRGYKLDVDV 106 >UniRef50_A4CDR3 Putative transcriptional regulator n=2 Tax=Pseudoalteromonas tunicata D2 RepID=A4CDR3_9GAMM Length = 709 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 18/181 (9%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++++G + + +S + +++ LEP++ D+L +F QH +S EL +N+W+ V+ Sbjct: 1 MIQIGRYQLDEEEMVLSCDDQRVLLEPKVFDVLTYFCQHHNRYISMTELHENIWQGRCVS 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + V + IS++R + D D +P YI ++PKRGYKL+ PV + E+ E + S Sbjct: 61 DAAVRRIISKIRILMND-DHKNPTYIQSLPKRGYKLICPVEYDIEDAAESSSVEST---- 115 Query: 125 EAVPATDSPSHS-LNIQNTATPPEQSPVKS-----------KRFTTFWVWFFFLLSLGIC 172 AV TD H+ N N T PE+ + K+ F F LL L IC Sbjct: 116 -AVAITDLSDHNEANNYNEPTEPEEHQDLAEELAGNFVHVVKKPKKFKYTFLSLLMLCIC 174 Query: 173 V 173 V Sbjct: 175 V 175 >UniRef50_B0RLM8 Transcriptional regulator n=6 Tax=Xanthomonas RepID=B0RLM8_XANCB Length = 1172 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 70/109 (64%), Gaps = 1/109 (0%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 P R+G LV P + +G ++TLEPR++++LV A+ +GEV+S ++L+ +VW S Sbjct: 74 PRFRLGPLLVEPERLMLIGDGERITLEPRMMEVLVALAERAGEVISAEQLLIDVWHGSFY 133 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEG 112 ++ V ++I++LR+ L D D P +I T+ KRGY+L+ VI+ + G Sbjct: 134 GDNPVHKTIAQLRRKLGD-DSRQPRFIETIRKRGYRLLPKVIFPEDYRG 181 >UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax=Stenotrophomonas RepID=B4SI58_STRM5 Length = 774 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 15/214 (7%) Query: 6 VRVGEWLVTPSINQISRNG--RQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 ++VG+ ++T S ++ G R L L P+ + +L + G V++R+EL VW ++ Sbjct: 14 IQVGDCVITLSSREVEVEGARRPLRLTPKALGVLRVLMRQPGRVVTREELFAEVWPDTLP 73 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 TN V+TQ++++LRK ++D++ YI T+ K GY+L+VPV+ ++ + + + + Sbjct: 74 TNDVLTQAVTQLRKVFANDDDNGQAYIETIAKSGYRLLVPVL-VLDDVAPVVEVDA---V 129 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 PE +PA S P +S + R WV +L+ ALV ++L Sbjct: 130 PEVMPALAGASAIPTATVLPAPSRRSGWRQLRRQLLWVLGVLMLA-----ALVVMATLLL 184 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQL 217 R S +P D + + S PY+L Sbjct: 185 RRGPETS----SPVDAAVENGVRVIGSPQRPYRL 214 >UniRef50_A5CFS8 Transcriptional regulator n=1 Tax=uncultured marine microorganism RepID=A5CFS8_9ZZZZ Length = 191 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 5/117 (4%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G W V P + + + LEP ++D+L+ A H G V++R++L+D VW V + Sbjct: 14 LGPWTVIPERGLLRQGTVKEHLEPMVMDVLMVLASHQGSVVTREQLVDAVWDGRFVADEA 73 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM----VPVIWYSEEEGEEIMLSSP 120 + I+ LR L D+ ++ P YI TVP+RGY+LM VP E+ G LS P Sbjct: 74 IVAKIATLRHKLGDHAKN-PTYIETVPRRGYRLMMTAVVPEAPEPEQRGSYKQLSRP 129 >UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KKU4_SHEWM Length = 711 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 1/126 (0%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 VG++ V S NQ+++ + TL P+ + +L A++ V+S+DEL+ +VW S+V + Sbjct: 7 VGDFFVDLSRNQLTQKQQSQTLPPKALAVLTCLAKNKASVVSQDELLSHVWPNSVVAPNT 66 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 + + I++LRK+L D D YI T K+GY L V V W E SSP P AV Sbjct: 67 LQRCIAQLRKALGD-DGKVQRYIKTHAKQGYSLEVDVHWQQPEPNNANKDSSPLPTTLAV 125 Query: 128 PATDSP 133 DSP Sbjct: 126 QVEDSP 131 >UniRef50_A3UJQ2 Transcriptional regulator n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UJQ2_9RHOB Length = 416 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 66/97 (68%), Gaps = 1/97 (1%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G V P++N+I+ + LEP+++DLLV+ AQ GEV S+D++ +W + V + Sbjct: 9 MGPVRVEPAMNRITSEEGPVELEPQVMDLLVYLAQAKGEVRSKDDIARALWPDASVNDDA 68 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 ++++I +LR++L D D SP ++ TV +RGY+L++PV Sbjct: 69 LSRTIWKLRQALGD-DAKSPRFVQTVSRRGYRLIMPV 104 >UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47YD8_COLP3 Length = 712 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 59/81 (72%), Gaps = 1/81 (1%) Query: 22 RNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKD 81 R+G + L P++ DLL+FF ++ ++++DEL+D VW ++VT + +++++ ++RK+L D Sbjct: 20 RDGESIILAPKVYDLLIFFCKNPARIITKDELMDEVWTGTLVTENAISRTLVKVRKALGD 79 Query: 82 NDEDSPVYIATVPKRGYKLMV 102 D SP +I TVP++GY+++ Sbjct: 80 -DPKSPQFIITVPRKGYRMVT 99 >UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJR7_CELJU Length = 499 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 25/192 (13%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V + W + N +S +++ LE RL+ LL+ F H GEVL ++ ++ +W+ +V Sbjct: 20 VFAIDSWRLCVHSNSLSSGDQRVELEHRLVALLLMFIDHPGEVLEKERILATIWQGKVVN 79 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + +IS LRK+L DN SP YI T+P GY+ + S EE ++P P+P Sbjct: 80 DDSLAVAISHLRKALGDNPR-SPRYIKTIPGVGYQFIA-----SAAPVEEAP-ATPAPVP 132 Query: 125 EAVPATDSPSHSLN--IQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLD 182 EA P LN I P + P R W+ + L V L A+ + D Sbjct: 133 EAAP--------LNPVIAERGYPHRRFP----RSPGLWI----PILLACLVLLTAWYARD 176 Query: 183 TRLPMSKSRILL 194 + P+S LL Sbjct: 177 EKKPVSSPDELL 188 >UniRef50_Q12S47 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12S47_SHEDO Length = 762 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 8/129 (6%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G + + S NQI++N + + P+ + +L + A++ G+V+S D L++NVW+ ++V+ + Sbjct: 7 IGGFFIDLSRNQITQNNQSQIIAPKALAVLTYLAENQGKVVSHDALLENVWQGTVVSPNT 66 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 + +SI++LRK+L D D VYI T K+GY L V W+ + SPP Sbjct: 67 LQRSIAQLRKALGD-DGKVQVYIKTHAKQGYSLECDVRWHDN-------IESPPLNAAQE 118 Query: 128 PATDSPSHS 136 D+P+ S Sbjct: 119 NIVDTPTMS 127 >UniRef50_A3D2S0 Transcriptional regulator, CadC n=3 Tax=Shewanella RepID=A3D2S0_SHEB5 Length = 1067 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 1/104 (0%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M GEW + PS N + + LEP+ +D+L+F Q +GEV+S DE++ + W Sbjct: 5 MSDSTFFFGEWQINPSANSLLLGKQVKQLEPKAMDVLLFLCQRAGEVVSSDEIVSHCWPG 64 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 ++ + + I++LR++L D+ D P+YI T+ KRGY+ + V Sbjct: 65 VDTGDNPLHKIINQLRRALDDSATD-PIYIETIRKRGYRTLAEV 107 >UniRef50_A5P8P2 Transcription activator ToxR n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P8P2_9SPHN Length = 342 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 1/97 (1%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 +VR G++ + ++ R G + L R D LV A H GE++S+ +D+VW+ VT Sbjct: 7 LVRFGDFTLDLHGRRLLRGGEAVELGSRYFDALVLLATHPGELISKTRFMDDVWRGIPVT 66 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + +TQ+I LR++L D + +P YI TVPK GY+ + Sbjct: 67 DEALTQAIRTLRRALGD-EASAPRYIETVPKHGYRFI 102 >UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15PB9_PSEA6 Length = 756 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 72/127 (56%), Gaps = 4/127 (3%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G++ V NQI+ N TL P+ + +L + A+H G+V+S+++L++ VWK ++V+ + Sbjct: 7 IGDFFVNLPRNQITHNEHTQTLPPKALAVLTYLAKHQGDVVSQEDLLNQVWKDTVVSPNS 66 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEE---GEEIMLSSPPPIP 124 + + I++LRK+ D D + I T K+GY L + W ++ G+ + L PP Sbjct: 67 LQRCIAQLRKAFGD-DGKAQGLIKTHAKKGYSLEAAIRWEDHQKRNVGDSVTLDKSPPNQ 125 Query: 125 EAVPATD 131 A T+ Sbjct: 126 HAKLGTN 132 >UniRef50_Q087B1 Lysine decarboxylase transcriptional regulator, CadC n=9 Tax=Shewanella RepID=Q087B1_SHEFN Length = 1102 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 5/136 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M G+W + P N + +LEP+ +D+L QH GEVL+ D++I++ W Sbjct: 1 MNDSTFFFGDWQINPQSNSVQSGDVIRSLEPKAMDVLRLLCQHQGEVLAADDIINHCWNS 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV----PVIWYSEEEGEEIM 116 + ++ + + I++LRK+L D +P YI T+ KRGY+ + P+ +++ ++ Sbjct: 61 IAIGDNPLHKVITQLRKALGDQ-ASNPQYIETIRKRGYRTIASVEFPIGHHTKVTTQQWQ 119 Query: 117 LSSPPPIPEAVPATDS 132 +SP P A DS Sbjct: 120 GASPFPGLRAFDTNDS 135 >UniRef50_B1KPW9 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KPW9_SHEWM Length = 693 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 66/101 (65%), Gaps = 1/101 (0%) Query: 12 LVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQS 71 LV P+ N++ +G+ + +EP+++ +L F +H G+V+SR+ + ++W ++V V+T++ Sbjct: 9 LVFPAHNKLEIDGQSIKIEPKIMQVLCFLLRHQGQVVSREFIAQSLWPDTVVGLDVITRA 68 Query: 72 ISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEG 112 I ELRK L D+ + SP +I T+ ++GY + P+ S EG Sbjct: 69 IFELRKILNDSAQ-SPQFIETIARKGYCFIYPLEQKSVAEG 108 >UniRef50_Q0AQA4 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Maricaulis maris MCS10 RepID=Q0AQA4_MARMM Length = 412 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 1/97 (1%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G W V PS +++ LEP+++DLL A+ GEV+SR + +W V Sbjct: 9 LGAWRVEPSSCEVTGPEGVRELEPKVMDLLCLLAEAKGEVVSRATISARIWPGVTVNEDA 68 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 + + + +LR++L D SP Y+ TVPKRGY+L+ PV Sbjct: 69 MGRCVWKLRRALGDPSR-SPRYVGTVPKRGYRLLEPV 104 >UniRef50_Q12RS3 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12RS3_SHEDO Length = 678 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 1/81 (1%) Query: 20 ISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSL 79 I+RN + L +EP+L LLV+ Q+ +SRDELI+ VW+ V+ + ++I +LRK + Sbjct: 17 ITRNRQALEIEPKLFSLLVYLCQNPNRAISRDELINTVWENRFVSEAAINRAIGQLRKHI 76 Query: 80 KDNDEDSPVYIATVPKRGYKL 100 +D D P YI TV K GY+L Sbjct: 77 ED-DTSHPKYIRTVSKVGYRL 96 >UniRef50_B2SNG2 Transcriptional regulatory protein, C terminal n=8 Tax=Xanthomonas RepID=B2SNG2_XANOP Length = 772 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 2/110 (1%) Query: 25 RQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDE 84 R L L P+ + +L+ A+ G+V++R++L+ VW ++ TN VVTQ++++LRK+ + Sbjct: 16 RPLRLAPKSLAVLLALARQPGQVVTREQLLAEVWPDTLPTNDVVTQAVTQLRKAFASHGG 75 Query: 85 DSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI--PEAVPATDS 132 +I T+ K GY+LM V+W + G + P + PE A D Sbjct: 76 QRSEHIETIAKTGYRLMAAVVWEAHAPGSTTLPQESPGVQSPELAQADDG 125 >UniRef50_Q0HTC3 Lysine decarboxylase transcriptional regulator, CadC n=3 Tax=Alteromonadales RepID=Q0HTC3_SHESR Length = 1075 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 1/104 (0%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M +GEW V PS N + + LEP+ +D+L+F Q++GEV+S DE++ + W Sbjct: 1 MSDSTFFLGEWQVNPSANSLLLGKQVKQLEPKAMDVLLFLCQNAGEVVSSDEIVSHCWPG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 ++ + + I++LR++L D+ +S YI T+ KRGY+ + V Sbjct: 61 VDTGDNPLHKIINQLRRALGDSATESR-YIETIRKRGYRTLAEV 103 >UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VGJ6_SPHWW Length = 382 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 24/147 (16%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G++++ P ++ R+G + L R +D L +++G ++ +D + VWK VT+ + Sbjct: 9 GQFVLDPEDRRLLRDGVPVELNARYLDALALLVRNAGSLVGKDRFLSEVWKDVPVTDEAL 68 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVP 128 TQ I LR+ L D D P +I TVPK GY+ + V W + P Sbjct: 69 TQCIRLLRQRLGD-DASRPHFIETVPKHGYRFIAEVDWRE----------------SSAP 111 Query: 129 ATDSPSHSLNIQNTATPPEQSPVKSKR 155 A D+ H+L PP +P +R Sbjct: 112 AEDAAPHTL-------PPSAAPSALRR 131 >UniRef50_B1KK09 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KK09_SHEWM Length = 711 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 61/92 (66%), Gaps = 1/92 (1%) Query: 23 NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDN 82 +G L +E R + LL +H GE +SR+ ++D +W +IV+++ V+Q+I++LRKSL+D Sbjct: 26 DGEWLEIEARQLALLKLLIKHHGEAVSRNLIMDEIWHDTIVSDNSVSQAITQLRKSLQD- 84 Query: 83 DEDSPVYIATVPKRGYKLMVPVIWYSEEEGEE 114 D+ +P +I TVP+ GY+L+ + E E E Sbjct: 85 DKGTPRFIRTVPRVGYQLIATIEEVKEPESLE 116 >UniRef50_B4RU42 Transcriptional regulator n=2 Tax=Alteromonas macleodii RepID=B4RU42_ALTMD Length = 1092 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 66/108 (61%), Gaps = 1/108 (0%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G+W V S N +S+ + ++EP+ +D+L+ Q G V+S DE++ W + + ++ Sbjct: 7 LGQWRVDVSSNTLSQGKTKKSIEPKAMDVLLLLCQQKGLVVSADEIVAQCWPNAPIGDNP 66 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEI 115 V ++I+ LR++L D +P YI T+ KRGY+++ V + +E+ + + Sbjct: 67 VHKAITNLRRALGDK-AAAPSYIETIRKRGYRVVAEVQFIDDEQSKAV 113 >UniRef50_A3WEA4 Adenylate cyclase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WEA4_9SPHN Length = 775 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 70/314 (22%), Positives = 138/314 (43%), Gaps = 33/314 (10%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66 R+G LV PS+ +I+ + LEP+++ +L+ + G +LSRD+LID W +V + Sbjct: 28 RLGSILVQPSLRRITGPDGERMLEPKVMQVLIALSSPVGTILSRDDLIDRCWDGRVVGDT 87 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEA 126 + + IS LR L++ D+ V + VPK GY+++V E + +L P P Sbjct: 88 SINRVISILRTGLREVAGDAAV-VENVPKVGYRIVV-------REAPDDVLEKPAPDVIE 139 Query: 127 VPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSL-GICVALVAFSSLDTRL 185 P + + +Q ++R T +L+L G + L F+ Sbjct: 140 QPTKPKVAATRRLQ-----------ANRRATIIIAGALAVLALVGAAIWLKPFAG----G 184 Query: 186 PMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINY 245 P+ R+ + P +I + S + +A VG + T+ + + + Sbjct: 185 PVGTVRMAMLPLEISEGVDPIYAAGLESELRAEFA-RVGAMEVTASESAKLLLGENL--- 240 Query: 246 NIDEPSSSGKTLSIAFV--NQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQ 303 EP+ G L + FV + + A++ + + +V++ G T+L + + ++ Sbjct: 241 ---EPAEIGTKLGVQFVWSGRFEVEAERIVLDVNVVNSETGETVLSQSVNSATDSAQSLP 297 Query: 304 NDLLESLSKALNQP 317 +++ AL++P Sbjct: 298 FRTARAVATALDRP 311 >UniRef50_A4CDV0 Putative transcriptional regulator n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CDV0_9GAMM Length = 676 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 33/162 (20%) Query: 20 ISRNGRQLT-LEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKS 78 I + R +T LEP++ LL F H EVLS++ L D +W +IV + + Q ++++R+ Sbjct: 36 IHHHSRAITKLEPQVSQLLHLFVTHPAEVLSKEYLQDTLWPNTIVEQNSLYQLLTKIRRL 95 Query: 79 LKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLN 138 L D+ SP YI T+PK+GY + PV Y+ P+A P DS +N Sbjct: 96 LNDSSR-SPQYIKTLPKKGYCFIAPVTRYN---------------PQAKPINDS---VIN 136 Query: 139 IQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 N + P ++W + + +L IC + AF S Sbjct: 137 NTNVSEPN-------------YLWLWLVPALIICFSAYAFFS 165 >UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax=Shewanella amazonensis SB2B RepID=A1S359_SHEAM Length = 729 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 15/195 (7%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66 R+G ++V P I++NG LE R++ +LV + +G +SRDELI VW+ V+++ Sbjct: 8 RLGPYMVIPERCVIAKNGSDTKLELRVMQVLVCLLERAGRPVSRDELIREVWRGGQVSDN 67 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEA 126 + + I++LR +L D D S I TVPK GY L+ V EG+ I S E Sbjct: 68 AINRIIAQLRSALGD-DARSQQVIQTVPKVGYLLIAEV---EPLEGQVITPSDLTHSSE- 122 Query: 127 VPATDSPSHSLNIQN------TATPPEQSPV----KSKRFTTFWVWFFFLLSLGICVALV 176 VP +P ++I++ + P+ PV K + + +G+ ++L+ Sbjct: 123 VPNAAAPVAPIDIEDNQQRSSSTMSPDIKPVPAQPKPAQLKPGRLILATYALVGVLLSLL 182 Query: 177 AFSSLDTRLPMSKSR 191 AF DT KS+ Sbjct: 183 AFIVWDTLTQSDKSK 197 >UniRef50_B8ESY3 Transcriptional regulator, winged helix family n=1 Tax=Methylocella silvestris BL2 RepID=B8ESY3_METSB Length = 956 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V G + ++ S +SR+G + + R +D+L+ + +GEV+S EL+D VW ++IV Sbjct: 12 AVLFGPYRLSASERLLSRDGAPVAISGRALDILIALIERAGEVVSVQELLDRVWPQTIVE 71 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + I+ LR+ L ND Y+ VP+RGY ++ P+ + E I I Sbjct: 72 EPNLRVHIATLRRVL-GNDSQGSRYVINVPRRGYSIVTPLYRLAREGAVAI---DATVIS 127 Query: 125 EAVPATDSPSHSLNIQNTATPPEQS-PVKSKRFTT 158 E P+ +P S+ I + T E S + SKRF + Sbjct: 128 ERQPSLPTPLQSM-IGRSGTVAELSVQILSKRFIS 161 >UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA75_KANKD Length = 741 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 2/99 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 +++G WLV P N + + +EP +D+LV+F Q+ +V+SR ELI+ VW +V + Sbjct: 5 IKMGSWLVFPDRNSLIFQEEEHNIEPLAMDVLVYFTQNPQKVVSRSELIEAVWSGRVVGD 64 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 H V + I++LR+ L + S YI T+ K+GY+L+ V Sbjct: 65 HSVYRIINKLRQILA--RDPSREYIKTIRKKGYQLVCDV 101 >UniRef50_A0Y3K5 DNA-binding transcriptional activator n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y3K5_9GAMM Length = 235 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 57/97 (58%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +GE+ + + TLEP+ + +L + + ++S +EL +NVW+ IVT+ Sbjct: 133 IGEYTFDSLQQSLIKEDNLYTLEPKCMQVLSYLIEQRPRIVSLEELHNNVWENQIVTDTA 192 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 V + IS+LR +L DND +P YI +V KRGY+L+ V Sbjct: 193 VRRVISKLRVALNDNDTKNPKYIKSVMKRGYQLIAEV 229 >UniRef50_Q2Y9M2 Transcriptional regulator, putative ATPase, winged helix family n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y9M2_NITMU Length = 1020 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 1/83 (1%) Query: 22 RNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKD 81 RN + + L P+ +L + A+ +G ++++DEL+D VW+R V V+ I+E+R++L D Sbjct: 22 RNDQVVPLRPKNFAMLCYLAERAGTLVTKDELLDAVWQRRFVGEAVLKVCINEVRRALGD 81 Query: 82 NDEDSPVYIATVPKRGYKLMVPV 104 + +P Y+ TVPKRGY+ + V Sbjct: 82 S-VSAPTYLLTVPKRGYRFIAQV 103 >UniRef50_A3VIF4 Adenylate/guanylate cyclase/hydrolase, alpha/beta fold family protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VIF4_9RHOB Length = 393 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G + ++ R+G + LEP++ DLLV FA + G ++ RD LID +W IV++ + Sbjct: 6 GTCEIDTDAHEFRRDGSVIALEPQVFDLLVLFASNPGLLIGRDRLIDEIWNGRIVSDAAI 65 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 + I+ +R+++ D D + + TVP+RG++ + V Sbjct: 66 SSRINAVRRAVGD-DGARQMVLQTVPRRGFRFVAQV 100 >UniRef50_C3KKU6 Putative transcriptional regulator n=1 Tax=Rhizobium sp. NGR234 RepID=C3KKU6_RHISN Length = 927 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 6/112 (5%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G + + P+ + RNG + L R ID+L+F H GE+ + E++ VW + V + Sbjct: 8 GSFSIAPARRSLLRNGSVIPLGSRAIDILLFLLSHPGELKTNAEIVRQVWPDTFVEEANL 67 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 +S LRK+L D + P +IA VP RGY+ + P+ E G ++ SSP Sbjct: 68 RVHLSALRKALGDTQRE-PQFIANVPGRGYRFIAPI----ERRGRAVV-SSP 113 >UniRef50_Q8EG94 Transcriptional regulator, putative n=1 Tax=Shewanella oneidensis RepID=Q8EG94_SHEON Length = 507 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 +Q + + E + P+ Q+S+N +++ LEPR I+LL F Q +G ++ +++I VW+ + Sbjct: 11 RQCTIAIDELVYDPATRQLSKNAQEIELEPRSIELLEVFLQQTGTPIAAEDIISRVWQSN 70 Query: 62 IVTNHVVTQSISELRKSLKDN--DEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSS 119 ++ +V+T IS LR K++ + D+ + T PK+GY L + + + I S Sbjct: 71 YISKNVLTNRISTLRAIFKESSPELDATKLLVTYPKKGYYLNATRVTLIDTAADLIAPSK 130 Query: 120 P 120 P Sbjct: 131 P 131 >UniRef50_B2G959 Two-component response regulator n=13 Tax=Lactobacillus RepID=B2G959_LACRJ Length = 236 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 PV+ G W + +++N + + L P+ LL + H G+VL+RD+L++ VW I+ Sbjct: 139 PVITTGSWEINQETYTVTKNDKTIALTPKEFQLLSYLVDHKGQVLNRDQLVNGVWGYDIL 198 Query: 64 -TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 T+ +V IS LR L+D D P ++ TV GYK + Sbjct: 199 DTSRIVDIHISHLRDKLED-DSQHPTHLLTVRGFGYKFV 236 >UniRef50_Q1Z6E8 Transcriptional activator of cad operon n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z6E8_PHOPR Length = 509 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 6/103 (5%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+P + + +P NQI+ NG + LEP LL FF + G V++ ++ D VW RS Sbjct: 11 QEPAI-----IFSPDKNQITINGEDIHLEPLQARLLTFFIEQQGNVVNAQQIADRVWDRS 65 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 V++++V Q IS LR L+D + I T+PK+GY + V Sbjct: 66 HVSDNLVRQVISLLRSQLQDKTRPYSI-IKTIPKQGYLFNIEV 107 >UniRef50_B1KFP5 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KFP5_SHEWM Length = 725 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 +++ R+ + +V P+ I +G L +E R + +L+ H+GE +SRD L+D VW Sbjct: 2 LKRTRYRLADKVVDPAQCTILSDGNLLKVELRAMQVLLCLINHAGEPVSRDMLLDEVWSG 61 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSE 109 V+++ + + I LR L DN + SP +I T+PK GY L+ P+ E Sbjct: 62 GEVSDNAINRIIGILRNQLGDNAK-SPEFIKTLPKVGYVLIAPITLVKE 109 >UniRef50_Q12QP4 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12QP4_SHEDO Length = 1131 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 1/96 (1%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G+W + P N + LEP+ +D+L+ Q G+VLS D+++ W + ++ V Sbjct: 9 GDWQINPESNSLRCGDVVKQLEPKAMDVLLLLCQSDGDVLSSDDIVKLCWGDIPMGDNPV 68 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 ++I++LRK+L D +P YI T+ KRGY+ + V Sbjct: 69 HKAITQLRKALGDK-ATAPTYIETIRKRGYRTLASV 103 >UniRef50_C7RJ06 Transcriptional regulator, putative ATPase, winged helix family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJ06_9PROT Length = 975 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%) Query: 19 QISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKS 78 ++ R+G + L PR +L +H+G +L+ + L+D VW VT+ V+ +ISELR Sbjct: 32 RLLRDGTAVALAPRPFAVLCALVRHAGSLLTTNALLDEVWGHQFVTDSVLRTAISELRTV 91 Query: 79 LKDNDEDSPVYIATVPKRGYKLM 101 L D+D P YI TV +RGY+ + Sbjct: 92 L-DDDARKPRYIETVSRRGYRFV 113 >UniRef50_UPI000190D045 DNA-binding transcriptional activator CadC n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190D045 Length = 97 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/97 (41%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 71 SISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPAT 130 SISELRKSL+D + + YI TVPKRGYKL PVIW E E LS+ PP P A Sbjct: 1 SISELRKSLRDGGDSNAEYIVTVPKRGYKLTAPVIWCEENSDEIDNLSTSPPPPIAATNA 60 Query: 131 DSPSHSLNIQNTATPPEQSPVKSK---RFTTFWVWFF 164 + Q+P K R FW W Sbjct: 61 EPTEGVPAAAPVPPASLQTPTKKAKKPRIAAFWTWVM 97 >UniRef50_C1F3P9 Transcriptional regulator, putative n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3P9_ACIC5 Length = 588 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 16/115 (13%) Query: 22 RNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKD 81 R +++ + PR +L + +H G ++S DE++D +W + V ++ + +LRK L D Sbjct: 18 RGSKRIAVRPRPFAVLEYLVEHPGRLISHDEILDALWPETFVQPQILRTYMLDLRKVLGD 77 Query: 82 NDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPSHS 136 D P YI T+PKRGY+ + V YS P AV A DS + + Sbjct: 78 -DAAEPKYIETLPKRGYQFVAAVSTYS---------------PSAVKAADSAAET 116 >UniRef50_C7R8I4 Transcriptional regulator, CadC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R8I4_KANKD Length = 217 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 57/91 (62%) Query: 10 EWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVT 69 +W V P++NQ+S + + LEP+++ +LV +H+GE++++D L + VW +++ + Sbjct: 13 DWQVDPALNQLSIDEKIFELEPKVMQVLVCLNEHAGELVTKDTLFEEVWHGVSISDDAIY 72 Query: 70 QSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 SIS+LRK+ + E + T+ ++GY L Sbjct: 73 CSISKLRKTFRQVAEHRSPELKTIARQGYML 103 >UniRef50_Q89GS8 Transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89GS8_BRAJA Length = 947 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 9/159 (5%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q + G + + + ++G L L R +D+L+F A+ +GEV+ + ELI VW Sbjct: 7 QDSTIAFGPFRLLAKSRLLEKDGAPLHLGGRALDILIFLAERAGEVVDKRELIKRVWSGV 66 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V + I+ LRK+L D E + Y+ VP RGY P++ + E +SPP Sbjct: 67 TVDEGSLRFHITTLRKALGDAGEGAR-YVVNVPGRGYCFTAPLLHPAPSESR----TSPP 121 Query: 122 -PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTF 159 P A+P SP + + A + + RF T Sbjct: 122 VSSPHALP---SPLARMIGRGEAVEKISAELALHRFVTI 157 >UniRef50_D1TLZ3 Transcriptional regulator n=3 Tax=Burkholderia RepID=D1TLZ3_9BURK Length = 849 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 20 ISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSL 79 ++RNG ++ + R +D+L+ A+ GE++S +L D VWK S+V + + +S LRK+L Sbjct: 21 LTRNGDEVRIGSRALDILIVLAERGGELVSTRQLRDQVWKESVVDDGALRVHVSTLRKAL 80 Query: 80 KDNDEDSPVYIATVPKRGYKLMVPV 104 D +S YI RGY+L PV Sbjct: 81 SDGQSESR-YIVNDNGRGYRLAAPV 104 >UniRef50_Q2SHD7 Probable transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SHD7_HAHCH Length = 487 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 4/106 (3%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW-KRSIVT 64 +++GEW + N++ R + L ++ +L+ A++ G +SR+ LI VW + V Sbjct: 9 MQIGEWRINVETNRLYREAAEHQLSDKVCKVLLALAENPGRTVSRETLIQKVWNENEYVG 68 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM--VPVIWYS 108 + +I +LRK+ D+ E +P YI T+PK+GY+L+ V VI Y+ Sbjct: 69 EQALNTAIWQLRKAFNDSSE-APEYIETIPKKGYRLLKEVSVIPYA 113 >UniRef50_B8CRI4 Transcriptional regulatory protein n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CRI4_SHEPW Length = 740 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 9/127 (7%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V R+G V P +Q+ +Q+ ++ + +L +F +HS +++RD L D+VWK + + Sbjct: 29 VFRLGNIDVDPKTDQLKCADKQIEIQSMAMKVLCYFCEHSDRLITRDNLRDDVWKNTATS 88 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVP---KRGYKLMVPVIWYSE-----EEGEEIM 116 NH + I LR++L D D YI TV GY+L ++ Y + +E E++ Sbjct: 89 NHTINNHIYSLRRNLGKLDPDVK-YIHTVTGGGTSGYRLSETLVHYDDTQLPNDESAELV 147 Query: 117 LSSPPPI 123 + P + Sbjct: 148 TVTTPTV 154 >UniRef50_A4YSP3 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YSP3_BRASO Length = 1015 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 55/85 (64%), Gaps = 1/85 (1%) Query: 20 ISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSL 79 + R+G ++ L P+ +LV + +GE+++++EL++ VW V+ ++ +I+ LR +L Sbjct: 20 LRRSGERILLAPKPFGVLVHLVERAGELVTKEELLNAVWSDVHVSESSLSVTINALRTAL 79 Query: 80 KDNDEDSPVYIATVPKRGYKLMVPV 104 DN + SP YI TVP+RGY+ + V Sbjct: 80 DDNKQ-SPRYIETVPRRGYRFIAAV 103 >UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7R1_HAHCH Length = 706 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 8 VGEWLVTPSINQISR-NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66 G WL P I+R +G + + D+L +H V++ +E D VW+ V + Sbjct: 33 AGVWLFNPRNQTIARADGLVHQVRAKTCDVLALLIRHHDRVVTTEEFFDQVWEGRFVGEN 92 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 V+ +SI ELR +D D YIAT PKRGY+L V Sbjct: 93 VLKRSIFELRHIFEDKSRD---YIATAPKRGYRLKAAV 127 >UniRef50_Q48IP6 Transcriptional regulator, LuxR family n=1 Tax=Pseudomonas syringae pv. phaseolicola 1448A RepID=Q48IP6_PSE14 Length = 936 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 2/102 (1%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 Q +R G +++ P + R+ + + L R + LLV FA GE+L + EL+ W +++ Sbjct: 13 QEAIRFGSFVLHPQQQLLFRHSQPVPLGSRAMSLLVAFATRPGELLEKAELLTLAWPKAV 72 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 V + I LR++L++ D+ + YI TVP RGY+ PV Sbjct: 73 VEECNLRAQIVTLRRALEEQDDFT--YIVTVPGRGYRFSAPV 112 >UniRef50_B4R7X2 Putative transcriptional regulator n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4R7X2_PHEZH Length = 697 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 13 VTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSI 72 V P+ ++ GR TLEPR++ +LV + G +SRDELID W+ IVT + + + Sbjct: 26 VRPAALEVEIGGRVTTLEPRVMKVLVALHRARGHPVSRDELIDLCWEGRIVTEGALNRCV 85 Query: 73 SELRKSLKDNDEDSPVYIATVPKRGYKL 100 ++LRK+L +++ T+P GY+L Sbjct: 86 AQLRKALAGEPR---IHLDTIPTVGYRL 110 >UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacterium RepID=Q1Z5R8_PHOPR Length = 291 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 9/118 (7%) Query: 30 EPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI--VTNHVVTQSISELRKSLKDNDEDSP 87 E R + LL+ + G +++R+ L D VW+ V + +TQ+IS LRK+LKD+ + SP Sbjct: 39 ESRALGLLI---EDPGAIITRNRLHDYVWREQGFEVDDSSLTQAISTLRKALKDSTK-SP 94 Query: 88 VYIATVPKRGYKLMVPVIWYSEEEGE-EIMLSSPPPIPEAVPATDSPSHSLNIQNTAT 144 +I TVPKRGY+++ PV YS E E ++ P P++ A ++ H ++++AT Sbjct: 95 DFIKTVPKRGYQMIAPVEEYSSEASNTEHTVAETPDSPDS--ADENNHHQDGVRHSAT 150 >UniRef50_A1SYN7 Cholera toxin transcriptional activator-like protein n=2 Tax=Psychromonas RepID=A1SYN7_PSYIN Length = 282 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 2/104 (1%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 VGE+L+ S N + R++ L P LL F ++ +V++R++L +VW R +VT+H Sbjct: 12 VGEFLIDTSQNSLIHTNRKVYLGPLRTSLLHFLCKNVNKVVTREDLAQHVWGR-LVTDHT 70 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEE 111 + Q IS+LRKS+ + I+T+PKRGY + I SE + Sbjct: 71 INQHISQLRKSIGTLVLHG-LNISTIPKRGYIARMDGIGLSENQ 113 >UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH Length = 186 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 64/116 (55%), Gaps = 8/116 (6%) Query: 36 LLVFFAQHSGEVLSRDELIDNVWKRS--IVTNHVVTQSISELRKSLKDNDEDSPVYIATV 93 +L AQ EV+SR++L D VW+ V + +TQ+IS LRK LKD+ + SP Y+ TV Sbjct: 42 ILWLLAQRPNEVISRNDLHDFVWREQGFEVDDSSLTQAISTLRKMLKDSTK-SPQYVKTV 100 Query: 94 PKRGYKLMVPVIWYSEEEGEEIM----LSSPPPIPEAVPATDSPSHSLNIQNTATP 145 PKRGY+L+ V EE E +S P + E ++ PS S + NT P Sbjct: 101 PKRGYQLIARVETVEEEMARESEAAHDISQPECVNEYAESSSVPS-SATVVNTPQP 155 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 13 VTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RSIVTNHVVTQS 71 + P + S +G +L L PR DLL FFA+H G+V SR +L++ VW + H V Sbjct: 144 IDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGYEHTVNTH 203 Query: 72 ISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 I+ LR ++ D PV I TV RGYKL P Sbjct: 204 INRLRAKIE-ADPAEPVRILTVWGRGYKLAAP 234 >UniRef50_B5WFU1 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. H160 RepID=B5WFU1_9BURK Length = 558 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 22/251 (8%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 V G + + P+ ++ R+G + L R +D+L+ QH+G+V+ R L+ W+ +V Sbjct: 79 VSFGPFTLFPAQRRLERSGSFVQLGSRALDILIVLIQHAGQVVDRRMLMSRAWRNIVVDE 138 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + +I+ LRK+L D E Y+ VP GY + + E I+ S I E Sbjct: 139 SNLRVNIAGLRKALGDG-EGRVRYVKNVPGIGY------CFVGQLTRERIVAESGSQIAE 191 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 P HS + A P Q + R + L+S+ V + Sbjct: 192 PSPCV----HSADFGPGAACP-QGRDEVLRTLASDLRRHRLISI---VGPGGIGKTTVAI 243 Query: 186 PMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDL-------VATSLNTFSTFM 238 ++K + P +I + +++ + + L+ +G+GDL +A L+T + Sbjct: 244 ALAKRLSGVFPSEIHVADLSEVADGDAVALTLARLLGLGDLHHVPVTYIANYLSTRRALI 303 Query: 239 VHDKINYNIDE 249 + D +Y IDE Sbjct: 304 ILDNCDYVIDE 314 >UniRef50_P15795 Cholera toxin transcriptional activator n=121 Tax=Gammaproteobacteria RepID=TOXR_VIBCH Length = 294 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 64/116 (55%), Gaps = 8/116 (6%) Query: 36 LLVFFAQHSGEVLSRDELIDNVWKRSI--VTNHVVTQSISELRKSLKDNDEDSPVYIATV 93 +L AQ EV+SR++L D VW+ V + +TQ+IS LRK LKD+ + SP Y+ TV Sbjct: 54 ILWLLAQRPNEVISRNDLHDFVWREQGFEVDDSSLTQAISTLRKMLKDSTK-SPQYVKTV 112 Query: 94 PKRGYKLMVPVIWYSEEEGEEIM----LSSPPPIPEAVPATDSPSHSLNIQNTATP 145 PKRGY+L+ V EE E +S P + E ++ PS S + NT P Sbjct: 113 PKRGYQLIARVETVEEEMARESEAAHDISQPESVNEYAESSSVPS-SATVVNTPQP 167 >UniRef50_B2JV11 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia RepID=B2JV11_BURP8 Length = 966 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 14/153 (9%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q +R+G+ V+ + +GR++ + R D+L G+++S+DE++ VW + Sbjct: 37 QMTTIRIGQIEVSLDHRDVRLDGRKVPIGSRAFDILALLIAARGDLVSKDEIMRAVWPTT 96 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 +V + + IS LR++ D E IATVP RGY+L++ + + + Sbjct: 97 VVEKNNLQVHISALRRAFGDERE----RIATVPGRGYRLIM----------QAELGAHAA 142 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSK 154 P +A ++ SL + A P + P+ ++ Sbjct: 143 PTRDAASEREATGMSLPAVSEAARPARRPLPAR 175 >UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Grimontia hollisae RepID=Q9RHQ9_VIBHO Length = 292 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 36/163 (22%) Query: 36 LLVFFAQHSGEVLSRDELIDNVWKRS--IVTNHVVTQSISELRKSLKDNDEDSPVYIATV 93 +L+ + +++R+ + D VW++ V + +TQSIS LRKSLKD+ + SP+++ TV Sbjct: 42 VLMVLIEEPHAIVTRNRIHDFVWRKQGFEVDDSSLTQSISTLRKSLKDSTK-SPMFVKTV 100 Query: 94 PKRGYKLMVPVIWYSEEEGE----------EIMLSSPP-----------PIPEAVPATDS 132 PKRGY+++ V Y+E+E E E + P P+P+AV Sbjct: 101 PKRGYQVVCSVEVYNEQEVELPEPAASVIDETAAKTEPELLSDNTAQTLPLPDAVAEQTE 160 Query: 133 PSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVAL 175 P S N AT P + P+ S W +L+L + +A Sbjct: 161 PKVSTN----ATAPAKMPLGS--------WVALVLTLLVPLAF 191 >UniRef50_B2T985 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia RepID=B2T985_BURPP Length = 504 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 111/258 (43%), Gaps = 30/258 (11%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 V G + + P+ ++ R+G + L R +D+L+ QH+G+V+ R +L+ W+ +V Sbjct: 25 VSFGPFTLFPTERRLERSGSVVQLGSRALDILIALIQHAGQVVDRRKLMSRAWRNIVVDE 84 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + +I+ LRK+L D ED Y+ VP GY + + E I S E Sbjct: 85 SNLRVNIAGLRKALGDG-EDGVRYVKNVPGIGY------CFVGQLTRERIATESSSHFSE 137 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSL----GICVALVAFSSL 181 P HS A P Q + R + L+S+ GI VA +L Sbjct: 138 PFPRV----HSGGFAPGAARP-QGRDEVLRTLASDLRRHRLISIVGPGGIGKTTVAI-AL 191 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDL-------VATSLNTF 234 RL P +I + +++ + + L+ +G+GDL +A L+T Sbjct: 192 AKRLSGE------FPSEIHVADLSEVAHGDTVALTLARLLGLGDLHHVPVTCIANYLSTR 245 Query: 235 STFMVHDKINYNIDEPSS 252 ++ D +Y IDE +S Sbjct: 246 RALIILDTCDYVIDEVTS 263 >UniRef50_C7E4R8 Transcriptional regulator n=1 Tax=Pantoea stewartii subsp. stewartii DC283 RepID=C7E4R8_ERWST Length = 288 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 23/186 (12%) Query: 10 EWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVT 69 ++ P++ + R+ L L + D+L + +S+DE + VW VT+ + Sbjct: 15 DYTFIPALRTLQRDDTTLQLRKKQTDVLALLCEKYPSPVSQDEFLSEVWDGCYVTSQSIA 74 Query: 70 QSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPA 129 Q I LR SLKD +S I T+PK GY+L W + E++ P + E PA Sbjct: 75 QMIRSLRISLKD---ESKKIIVTIPKLGYQLTAEPYWEASLSQPELL---PDTLNERTPA 128 Query: 130 TD---------SPSHSLNIQNT-----ATPPEQSPVKSKRFTTFWVWFFF-LLSLGICVA 174 S S +N Q T + P+ P+ +R T WF F + +L I +A Sbjct: 129 ARKIELNNISYSSSTFINCQPTPMTVVSYAPQHKPM--ERNLTSSKWFLFAVTTLSIILA 186 Query: 175 LVAFSS 180 VA + Sbjct: 187 AVAMGA 192 >UniRef50_A5CFS9 Putative uncharacterized protein n=1 Tax=uncultured marine microorganism RepID=A5CFS9_9ZZZZ Length = 627 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G W V+P + + + + +EP ++++LV A +G+V++ D++++ VW Sbjct: 13 LGPWQVSPDLGLLRQGETEQRVEPMVMNVLVLLASGNGDVVTTDQIVEAVWGGRSTATEA 72 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYK 99 + Q I LR+ L D+ +D P +I T+PK GY+ Sbjct: 73 IVQKIKVLREKLGDDPKD-PKFIQTIPKIGYR 103 >UniRef50_Q5E5T5 Transcriptional regulatory protein n=1 Tax=Vibrio fischeri ES114 RepID=Q5E5T5_VIBF1 Length = 426 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 3/81 (3%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK 77 N I N + +E + LL F ++ G V S++E+++ VWK S+VT+ VV Q++ +LRK Sbjct: 16 NCIKINEVKHLIEGKQSSLLSFLIRNEGVVFSKEEILEKVWK-SVVTDQVVVQAVFKLRK 74 Query: 78 SLKDNDEDSPVYIATVPKRGY 98 KDN+ +SP I T+P++GY Sbjct: 75 LFKDNNLESP--IVTIPQKGY 93 >UniRef50_A4CCM5 N-terminal winged-HTH domain fused to TolB-like domain n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CCM5_9GAMM Length = 666 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 54/89 (60%), Gaps = 3/89 (3%) Query: 16 SINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISEL 75 + +++++G LEP+++ +L Q +G ++S+ L+D VW ++V + + + I++L Sbjct: 12 ATGELNQHGETQQLEPKVLAVLTVLYQANGMLVSQQTLLDTVWPNTVVAPNALQRCITQL 71 Query: 76 RKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 RK L D+D+ I T KRGY+L VP Sbjct: 72 RKHLADDDK---TLIQTFAKRGYRLQVPT 97 >UniRef50_Q0BZ36 TPR domain protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZ36_HYPNA Length = 522 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 P R+G + P + ++S LEPR++ +L+ A S EV++RDELI W V Sbjct: 19 PRCRIGALTLAPPLREVSGPDWTEVLEPRVMQVLIALASPSAEVVTRDELIARCWNGLAV 78 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + + + I LR+ +D I TVP+ GY+L+ E + + + P Sbjct: 79 SEDAIQRCIGRLRRLARDRGS---FEIVTVPRVGYRLLPDAAPMPRETSDRLKGHTRSPA 135 Query: 124 PE 125 P+ Sbjct: 136 PQ 137 >UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseudomonas fluorescens RepID=Q3KEV5_PSEPF Length = 928 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 1/103 (0%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G + + P + + L L R +D+L+ H+GEV+S+ +LI VW S+V + + Sbjct: 12 GPYRIHPGQRLVLEGDQPLRLGRRAMDILLILLAHAGEVVSKQQLIAGVWPDSVVEDINL 71 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEE 111 ++ LRK+L D + YI TV +RGY + PV+ S E+ Sbjct: 72 RVHMAALRKALGDG-QAGQRYIVTVAQRGYSFVAPVVLQSIEQ 113 >UniRef50_B1YN09 Transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=B1YN09_BURA4 Length = 481 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 5/141 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V+ +GE+ + + + + GR++ L R D+L SG ++S+DEL+D VW Sbjct: 20 EHSVIALGEFELNLGMRALYKAGREVPLGSRAFDILSVIVLASGRIVSKDELMDTVWPGV 79 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V + + +S +RK+L D+ + I TVP RGY+ V S E G ++ Sbjct: 80 FVEENNIHVHLSAVRKALGDHRQ----LIDTVPGRGYRFKV-FDGMSAEPGRDVPTERHA 134 Query: 122 PIPEAVPATDSPSHSLNIQNT 142 P+ P H L + T Sbjct: 135 PLFRNADTMTPPRHRLPGRRT 155 >UniRef50_Q1M6Q3 Putative adenylate cyclase/transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1M6Q3_RHIL3 Length = 955 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 56/96 (58%), Gaps = 1/96 (1%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 GE+ + P + + ++ + + R +++L+ + GE++++DELI W +IV + Sbjct: 20 GEFRLYPGRHLLVKDQEPVAVGSRALEILIALTERPGELVTKDELISRAWPNTIVEESNL 79 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 I+ LRK+L + D+ + YIA VP RGY+ + P+ Sbjct: 80 RAQIAVLRKALGE-DQSAARYIAAVPSRGYRFIAPL 114 >UniRef50_Q98JB4 Adenylate cyclase n=1 Tax=Mesorhizobium loti RepID=Q98JB4_RHILO Length = 541 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 6/132 (4%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK 77 ++ R + +EP++ DLL + ++ V+S+D+L+D VW+ IV++ + ++ R Sbjct: 40 RELRRGNSLIAVEPQVFDLLQYLIRNRERVVSKDDLVDAVWQGRIVSDATLASRVNAARS 99 Query: 78 SLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE-AVPATDSPSHS 136 +L+DN E + + T P+RG++ + V EE G E P P +PA S + Sbjct: 100 ALQDNGEQQRL-VRTFPRRGFRFVGTV---HEEAGAEATAPVEPAKPGLGIPARPSIA-V 154 Query: 137 LNIQNTATPPEQ 148 L N + P+Q Sbjct: 155 LPFVNLSGDPDQ 166 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-H 66 +G V ++ +GR + L P+ +LL+F +H G+VLSR +L+ VW + + Sbjct: 135 IGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHGVWDYHFLGDTR 194 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 +V IS LR ++ N +P YI TV GYKL P Sbjct: 195 IVDVHISHLRDKIEQNAR-TPEYIMTVRNVGYKLHAP 230 >UniRef50_B7NQ98 Putative Transcriptional regulator n=3 Tax=Escherichia coli RepID=B7NQ98_ECO7I Length = 565 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 25 RQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDE 84 ++ + P+ + +++ GE++S++E+ID VW S+ ++ +T+ I LRK L +N + Sbjct: 31 KEYHIPPKELGVIILLLNADGEIVSKEEIIDKVWSASVASDESLTRCIYALRKLLHENKQ 90 Query: 85 DSPVYIATVPKRGYKLMVPVIWYSEEE 111 YI TV RGY+ VP++ ++ E Sbjct: 91 CK--YIETVYGRGYRFTVPIVIVTDNE 115 >UniRef50_C6XRJ0 Transcriptional regulator, CadC n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRJ0_HIRBI Length = 398 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 3/101 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V + GE+++ + I+ G L L P+ + L + G + S++EL++ +W T Sbjct: 10 VFKFGEFVLDRDLGTITFEGDDLKLRPKAYEFLSLLVEGRGRLFSKEELLETLWPHVFAT 69 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVI 105 + + +S R +L D ++ I T+PKRGY++ +PV Sbjct: 70 EESLARVVSTCRCALGDEEK---TIIVTIPKRGYRIGLPVF 107 >UniRef50_C5SN08 Transcriptional regulator, CadC n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SN08_9CAUL Length = 651 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 7/117 (5%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G V P+ +++R + +EP+++ +L H G+V+SRD+L+ W V+ Sbjct: 13 IGRLRVKPAACEVTRETKVWVIEPQVMRVLALLGLHHGQVVSRDDLVKACWDGRAVSEDA 72 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + +S LR+ +D+ + +I TV K GY+L + E E +++ PP P Sbjct: 73 INRVLSRLRQLGRDSGD---FHIRTVRKVGYRLEI----LEPETAPEETITAAPPTP 122 >UniRef50_Q3KE15 Putative transcriptional regulator n=3 Tax=Proteobacteria RepID=Q3KE15_PSEPF Length = 959 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G + V P ++RNG + + R +DLL+ + G VLS+ +LID VW S+V + Sbjct: 19 GPFCVVPGKRLLTRNGVAVEIGGRALDLLIALLEQPGRVLSKYDLIDKVWPDSVVAEGSL 78 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 ++ LR+ L D +E + YIAT GY + P+ Sbjct: 79 RFHMTGLRRILGDGEEQAR-YIATQVGVGYAFVAPL 113 >UniRef50_D0XZV6 Transcriptional regulator, CadC n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XZV6_9CAUL Length = 497 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%) Query: 8 VGEWLVTPSINQI-SRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66 +G V PS+ Q+ + +GR+ LEPR++ +LV A G +LSRD+LI W IV Sbjct: 2 LGGAKVRPSLRQVVAVDGRETVLEPRVMQVLVALASAGGAILSRDDLILTCWSGRIVGED 61 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + + IS LR+ ++E I T+ K GY+++ Sbjct: 62 AINRVISRLRRL---SEEIGGFRIETITKVGYRIV 93 >UniRef50_D1TLX7 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TLX7_9BURK Length = 476 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 4/95 (4%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 +++G + + + R+G+ L L R DLL A +G V+SR EL+ VW ++V + Sbjct: 1 MKIGRIELDMNARCVRRDGQDLRLGSRAFDLLATLASANGRVVSRSELMQTVWPGTVVED 60 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + +IS LRK+L D+ + I TV +RGY+L Sbjct: 61 CNIDVNISALRKALGDDRD----LIVTVARRGYQL 91 >UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vibrio RepID=D2YQP0_VIBMI Length = 280 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Query: 36 LLVFFAQHSGEVLSRDELIDNVWKRSI--VTNHVVTQSISELRKSLKDNDEDSPVYIATV 93 +L AQ EV+SR++L D VW+ V + +TQ+IS LRK LKD+ + SP Y+ TV Sbjct: 43 ILWLLAQRPNEVVSRNDLHDFVWREQGFEVDDSSLTQAISTLRKMLKDSTK-SPQYVKTV 101 Query: 94 PKRGYKLMVPVIWYSEE 110 PKRGY+L+ V EE Sbjct: 102 PKRGYQLITRVETVEEE 118 >UniRef50_Q15YV6 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15YV6_PSEA6 Length = 1124 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 9/106 (8%) Query: 5 VVRVGEWLVTPSINQISRNGRQLT-LEPRLIDLLVFFAQHSGE-----VLSRDELIDNVW 58 + +G+W VTP N + R G +T LEP+ +D+L+ Q + LS D++ W Sbjct: 9 IFYIGDWQVTPQTNSV-RAGDAVTQLEPKAMDVLLLLCQQRRDNGHEHALSADDIASQCW 67 Query: 59 KRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 I N V ++I++LRK+ D +P YI T+ KRGY+++ + Sbjct: 68 GSEIGDN-PVHKAITQLRKAFNDK-PSTPKYIETIRKRGYRIVAKL 111 >UniRef50_A0Y4N9 Transcriptional regulator, CadC n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y4N9_9GAMM Length = 715 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 2/106 (1%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 ++ G W + P I+ + LEP L +L + + +++R +LID+VW + V + Sbjct: 13 IKFGAWRLNPKQQTINDGAIERELEPLLFKILSYLILNKESIITRQDLIDDVWCQHYVDD 72 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV-PVIWYSEE 110 + + ++ISELRK+LK +D+ + + T ++GY + P I + E+ Sbjct: 73 NAINRAISELRKALK-SDKQRGLVVKTHYRKGYSFFLEPEIIHHEK 117 >UniRef50_UPI0001AF360D LuxR family transcriptional regulator n=3 Tax=Pseudomonas syringae group RepID=UPI0001AF360D Length = 939 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 4/100 (4%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + G + + P + ++ + + L R + LLV FA GE+L + EL+ W R++V Sbjct: 25 AIHFGSFTLLPREYLLLKDSQPVPLGSRAMALLVAFATRPGELLEKAELLTLAWPRAVVE 84 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 + I LR++L NDE++ YI TVP RGY+ + PV Sbjct: 85 ECNLRAQIVALRRAL--NDEEN--YIVTVPGRGYRFIAPV 120 >UniRef50_A4C973 Putative transcriptional regulator n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C973_9GAMM Length = 713 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 12/167 (7%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 ++ G W + P ++ + + L+P LL +F ++ +RDEL ++VW + V + Sbjct: 7 LKFGPWSLEPHRCLLTSSDIEKELDPLSYKLLSYFLACGNKITTRDELAEHVWGQRYVDD 66 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + + ++ISELRK L D P +I T K+GY V + +E P + E Sbjct: 67 NAIYRAISELRKHLHHPDYTQP-FIKTHHKKGYSFTARVSAHHQE----------PLLNE 115 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWV-WFFFLLSLGI 171 + + L A PE VK + V F FLL +G+ Sbjct: 116 VINDLPANIELLEQSVLANEPELVAVKKSSMQRYVVAGFAFLLCIGV 162 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 12 LVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH-VVTQ 70 LV + Q+ +GR + L R DLL A H G V SRDEL++ VW H + Sbjct: 145 LVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGYDFEGGHRTIDV 204 Query: 71 SISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + +LR+ L + D PVY+ TV GYK P Sbjct: 205 HVRKLREKL-EPDPTRPVYVLTVWGVGYKFAGP 236 >UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SAM2_YERMO Length = 243 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 3/125 (2%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G + TPS I++ G + + + ++L H LSR+E+ +W S VT++ Sbjct: 30 IGNIIFTPSKRTINKGGAVVKIRNKESEVLSLLCHHYPSSLSREEIEREIWGESYVTDNT 89 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 +TQ+IS LR +L D + + T+PK+GY + + + S ++++L+ + Sbjct: 90 LTQTISNLRHALDDKARE---LVTTIPKKGYCIGIKPDFTSSNSLQDLILTQDDSMVSVK 146 Query: 128 PATDS 132 P + S Sbjct: 147 PKSTS 151 >UniRef50_B7VJ79 Transcriptional regulator n=6 Tax=Vibrionaceae RepID=B7VJ79_VIBSL Length = 462 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 3/108 (2%) Query: 15 PSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISE 74 P NQ+ + ++ LEP LL +F G+V+S ++ +VW+R+ V++++V Q IS Sbjct: 19 PDKNQLVIDSEEIHLEPLQARLLSYFIDKRGQVVSTQQIAADVWQRTQVSDNLVRQVISL 78 Query: 75 LRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 LR L+D + I T+PK+GY + +I S E + + PPP Sbjct: 79 LRSQLQDKVRPYRI-IQTIPKQGYLFDIEIIQPSVETTPVVEI--PPP 123 >UniRef50_A4CDM3 Putative transcriptional regulator n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CDM3_9GAMM Length = 678 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 58/89 (65%), Gaps = 2/89 (2%) Query: 17 INQ-ISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISEL 75 +NQ +S++G +LT+EP+++ +LV+ +++ +S EL D +W+ +V++ + +++ +L Sbjct: 14 VNQTLSKSGVELTIEPQVLTVLVYLIENNDRYISTQELHDALWQGRVVSDTAIRRAVGKL 73 Query: 76 RKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 R L D D P +I +V KRGY+ + + Sbjct: 74 RVILGD-DAKEPNFIKSVSKRGYRFVAEL 101 >UniRef50_Q89ML1 Blr4182 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89ML1_BRAJA Length = 944 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 6/116 (5%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G + + Q+ ++G ++ + R D+L+ + +GE++S+ +L+ +VW+ +V V+ Sbjct: 18 GRFQLDKRRRQLLKDGVEVRIGSRGFDILIALTERAGELVSKRDLLFSVWRDVVVDEAVL 77 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSS--PPP 122 ++ LR++L + +D YI TV RGY + P+ + G + S PPP Sbjct: 78 RVHVASLRRALGEG-QDGARYIVTVSGRGYSFVAPI---ERKRGNGLASSGYVPPP 129 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 2/100 (2%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + V+ VG+ + + +++RNG+ ++L P+ +LLV+F + G VLSRD ++++VW Sbjct: 139 RAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVLSRDAILNHVWGYDY 198 Query: 63 VT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + +V IS LR+ + + D P I TV GY+ + Sbjct: 199 ASETRIVDIHISHLREKI-EADPKQPRLIRTVRGFGYEFV 237 >UniRef50_B0SVQ0 Transcriptional regulator, winged helix family n=1 Tax=Caulobacter sp. K31 RepID=B0SVQ0_CAUSK Length = 954 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 5/116 (4%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G +L+ P ++R G + + R +++L+ G VL+ +L++ W V + Sbjct: 21 GPYLLAPGRRLLTRQGVPVAVGARALEILIALLSEHGRVLTHRQLVERAWAGLTVEESNL 80 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 ++S LRK+L D E YI V RGY + PV W E + +SP +P Sbjct: 81 RVAVSGLRKTLGDG-EGGARYIENVVGRGYCFVAPVRWLEAEPAD----ASPSIVP 131 >UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepID=A1JPG4_YERE8 Length = 219 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G+ + TP +++ G + + + ++L H +VLSR+++ +W S VT++ Sbjct: 6 IGDIIFTPLKRTLNKGGSVIKIRNKESEVLSLLCFHYPDVLSREDIEKKIWSESYVTDNT 65 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 +TQ+IS LR +L D + + T+PK+GY L V Sbjct: 66 LTQTISNLRHALNDKKHE---LVTTIPKKGYCLGV 97 >UniRef50_B8CUZ5 Transcriptional regulatory protein n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CUZ5_SHEPW Length = 662 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 27 LTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDS 86 + +EP+ + +L + A GE +SR L + W + +VT + + +S LR+ KDN + Sbjct: 1 MLVEPKAMMVLQYLASRPGETVSRQVLFEEFWPKQVVTEDALNRVMSSLRRLFKDNASN- 59 Query: 87 PVYIATVPKRGYKLMVPV 104 P YIAT+ K GYKL+ V Sbjct: 60 PEYIATIRKVGYKLVADV 77 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +GE+ + S + I R G +L L R DLL F +H G+ SR++L+ +VW Sbjct: 169 LGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVWGWEFGDLST 228 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 VT ++ LR+ + + D P +ATV GY+L Sbjct: 229 VTVTVRRLREKI-ETDPTHPTILATVWGVGYRL 260 >UniRef50_Q3KEV6 Putative transcriptional regulator n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KEV6_PSEPF Length = 490 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V+R G + I RQL + R +D+L + +G+V+S+++LI VW S+V Sbjct: 12 VLRFGPYAFHLRQRLILEGDRQLRMGGRALDILQVLVERAGQVVSKEQLIALVWPTSVVE 71 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 + I+ LR++L + E+ YI VP+RGY + PV Sbjct: 72 EINLRVHIAALRRALGEG-ENGQRYIVNVPQRGYSFVAPV 110 >UniRef50_Q022K7 Transcriptional regulator, putative ATPase, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022K7_SOLUE Length = 978 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Query: 27 LTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDS 86 + L P+ D+L + +H+ V++ DEL++ +W ++ V + + + E+RK L D + Sbjct: 1 MPLTPKAFDVLRYVVEHADRVVTHDELLEAIWPQTYVNPEGIRKYVLEIRKVLGDQ-RNP 59 Query: 87 PVYIATVPKRGYKLMVPV 104 P +I T+PKRGY+ + V Sbjct: 60 PFFIETLPKRGYRFIAKV 77 >UniRef50_A3SM14 Adenylate/guanylate cyclase/hydrolase, alpha/beta fold family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SM14_9RHOB Length = 420 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 59/100 (59%), Gaps = 1/100 (1%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V R + P+ + + R+G + +EP++ LL A+ +G++++++EL++ VW+ ++ Sbjct: 2 VYRFANCRLDPARHLLLRDGEPVHVEPQVFTLLQVLAERAGQLITKEELVETVWRGLAIS 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 + ++ IS RK++ D + + + TV G++L+ PV Sbjct: 62 DATISARISAARKAIGDTGQAQAI-LKTVHGCGFRLVAPV 100 >UniRef50_A8AKG2 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=A8AKG2_CITK8 Length = 317 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 23/187 (12%) Query: 1 MQQPVVRVGEWLV---TPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNV 57 M + V WLV + SI ++ R+ E +L LL Q +G++ +R+EL V Sbjct: 1 MNKRYYSVNNWLVDIPSGSILHLTTGERKRLGEYQL-KLLETLMQDAGKIFTREELTTLV 59 Query: 58 WKRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIML 117 W+R ++ N+ + +I LR +L+D+ + + I T+PK+GY L + E+E E+ Sbjct: 60 WERRVIGNNSLPNAIHALRTALEDDGKKQKI-IKTIPKKGYLLEPDYCCFIEKEESEVRD 118 Query: 118 SSPPPIP-------------EAVPATDSP-SHSLNIQNTATPPEQS-PVKSKRFTTFWVW 162 +P E V T P + N TPP + PVK + W Sbjct: 119 PEENHLPLEENAPSDLAGEYEVVDETSLPVAEQANDIVRVTPPATTRPVKK---SIHWTT 175 Query: 163 FFFLLSL 169 F LL+L Sbjct: 176 VFLLLAL 182 >UniRef50_Q89GU0 Blr6255 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89GU0_BRAJA Length = 946 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 14/139 (10%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + G + + P + + G L + R +D+L+F A GEV+ + EL+ +W Sbjct: 6 EDSAISFGPFRLFPKSRLLEKEGSPLHVGGRALDILIFLAGRPGEVVDKRELVKRIWADV 65 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V + ++ LRK+L D + S Y+ VP RGY + + ++PP Sbjct: 66 NVDEGSLRFHVAALRKALGDTGK-SARYVVNVPGRGYSFVA-----------SLAQAAPP 113 Query: 122 PIPEAVPATDSPSHSLNIQ 140 P VP P SL +Q Sbjct: 114 VAP--VPLDIVPPRSLPVQ 130 >UniRef50_B0RLY2 Putative membrane protein n=1 Tax=Xanthomonas campestris pv. campestris str. B100 RepID=B0RLY2_XANCB Length = 524 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK 77 ++ R+G L + LL + Q V+ DELI NVW ++V VTQ + LR+ Sbjct: 21 QRVERDGVALEVGGLNFRLLHYVLQQGQRVVGFDELIQNVWAPALVNEETVTQRVRLLRQ 80 Query: 78 SLKDNDEDSPVYIATVPKRGYKLMVPV 104 +L D D P Y+ +V +GY+L VPV Sbjct: 81 ALGD-DSRRPRYLRSVRGQGYQLCVPV 106 >UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersinia RepID=B1JQB0_YERPY Length = 250 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 + + TP I RNG+ + + +LL ++ E +SR+++ +W+ S VT++ Sbjct: 6 INDVFFTPQKRTIDRNGKVTKIRNKESELLSLLCEYYPEPISREDIEKRLWEGSYVTDNT 65 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 +TQ+IS LR +L D + + T+PK+GY++ + Sbjct: 66 LTQTISNLRHALDDKKHE---LVVTIPKKGYRIGI 97 >UniRef50_A4XNQ3 Transcriptional regulator, CadC n=1 Tax=Pseudomonas mendocina ymp RepID=A4XNQ3_PSEMY Length = 277 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 31/162 (19%) Query: 32 RLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDSPVYIA 91 RL++ LV + GEV++R+EL+ + W +V + Q I LR+ L DE S I Sbjct: 58 RLLERLV---REPGEVVAREELMSHAWADRVVGQGSLNQQIYTLRQIL--GDEKSREIIQ 112 Query: 92 TVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE--AVPATDSPSHSLNIQNTATPPEQS 149 T+P+RGY L + Y PP I + AV D+P TPP Sbjct: 113 TLPRRGYLLNPSYLVY------------PPSIDDIGAVQEADAP---------GTPPNFL 151 Query: 150 PVKSKRFTTFWVWF--FFLLSLGICVALVAFSSLDTRLPMSK 189 S+R T++ V L+++G+ VAL F SL RL S+ Sbjct: 152 HRHSRRRTSWLVLLSALGLMAVGLFVALYQF-SLPARLHSSE 192 >UniRef50_Q28RN5 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Jannaschia sp. CCS1 RepID=Q28RN5_JANSC Length = 413 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK 77 ++++R + +EP++ DL+ A+ + +LS D +I +W IV++ ++ +S R Sbjct: 25 HRLTRGDADVHVEPQVFDLITALARVAPNLLSYDAMIAEIWGGRIVSDATLSARVSAART 84 Query: 78 SLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVP 128 +L DN + I TVP+RG ++ VPV G + + P VP Sbjct: 85 ALGDNGRAQAI-IRTVPRRGVQMAVPVTGMDTGMGTDTGGQTAPQTGVQVP 134 >UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21GQ2_SACD2 Length = 425 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 2/110 (1%) Query: 19 QISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKS 78 +I+ G +++EP++ D++V+ ++ ++SRDEL + +W V++ ++ I RK+ Sbjct: 16 RITCAGLTVSVEPKVFDIIVYLIENRNRLVSRDELFEKIWDARAVSDTTLSNHIKSARKA 75 Query: 79 LKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVP 128 L D+ E I TV RGY+ + V S E I SS P + P Sbjct: 76 LGDDGEQQHT-IKTVRGRGYQFIAEV-SVSALTDEPIAASSSAPSERSAP 123 >UniRef50_A7H060 Two-component regulator n=29 Tax=Campylobacterales RepID=A7H060_CAMC5 Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 64/103 (62%), Gaps = 9/103 (8%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR-SIV 63 ++++ + ++ P +I+ GR + L+ + ++L A+HS +++S+++L+D +W+ +V Sbjct: 123 IIKIDDLIINPDEEKITYLGRDIELKGKPFEVLTHLARHSDQIVSKEQLLDAIWEEPELV 182 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIA---TVPKRGYKLMVP 103 T +V+ +I+++R+ + D P+ I+ TV +RGY+ P Sbjct: 183 TPNVIEVAINQIRQKM-----DKPLNISTIETVRRRGYRFCFP 220 >UniRef50_Q89XL4 Transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89XL4_BRAJA Length = 989 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G + + PS ++ R+G L L R D+L+ + +G V+S+ EL+ W + V + + Sbjct: 53 GPFRLDPSQRRVERDGSPLQLSGRAFDILLALVRQAGNVVSKTELMATTWPGAAVEENSL 112 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 I+ LRK+L D + D Y++TV +GY + V Sbjct: 113 RVHIAALRKALGDGN-DGVRYLSTVSGQGYCFVAAV 147 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RSIVT 64 + GE + + +++ +++TL + DLL++ A H G+V SR++L+D VW + Sbjct: 136 LHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKLLDAVWGYQHSGY 195 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 H V I+ LR L + D +P Y+ TV GYK Sbjct: 196 EHTVNSHINRLRTKL-ETDTSNPKYVLTVWGVGYKF 230 >UniRef50_A2SGK5 ATPase-like protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SGK5_METPP Length = 977 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 2/101 (1%) Query: 3 QPV-VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 QP+ +R G++ + + + R+ + L L PR +L + G+++++D L+D VW Sbjct: 5 QPLLIRFGDFELDEANAMLKRHEQALDLPPRAFSVLCELVRRPGQLVTKDMLLDAVWGHH 64 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V+ V+ ++ LR + D+D +P +I T +RGY+ + Sbjct: 65 HVSESVLKSAVRTLRAAF-DDDARAPRFIETASRRGYRFIA 104 >UniRef50_A7FEG6 Transcriptional regulator n=26 Tax=Yersinia RepID=A7FEG6_YERP3 Length = 348 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 9/98 (9%) Query: 8 VGEWLVTPS----INQISRNGRQL-TLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 V WL+ + +Q +R ++L + +LI++L+ +H+GE+LSRDEL + VWKR + Sbjct: 16 VNGWLIDLTSGFITHQETREKKRLGEYQLKLINVLL---EHAGEILSRDELTNLVWKRRV 72 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + N+ + +I LR +L D ++ + I T+PK GY L Sbjct: 73 IGNNSLPNAIHTLRVALGDENKQQRI-IQTIPKIGYLL 109 >UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022A1_SOLUE Length = 605 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 27 LTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDS 86 + LEP+ +++L+ + GEV++R +L+ VW + V ++ +IS LR+ L D Sbjct: 2 VALEPKAVEVLLILVEKRGEVVARQDLMSAVWPDTFVEESNLSSNISILRRQL-GTPPDG 60 Query: 87 PVYIATVPKRGYKLMVPV 104 YI T+PKRGY+ + V Sbjct: 61 GDYIQTIPKRGYRFVAAV 78 >UniRef50_B1M5U0 Transcriptional regulator domain protein n=3 Tax=Rhizobiales RepID=B1M5U0_METRJ Length = 525 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 8/121 (6%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + R G + + + ++SR+G ++ +EP++ DLL + V+SRD+L++ VW IV+ Sbjct: 2 IYRFGPFTLDSARRELSRDGAEIAVEPQVFDLLRVLIERRDRVVSRDDLLEAVWNGRIVS 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + I+ R ++ D +I T+P++G + + V E E+ SP P Sbjct: 62 EATLGSRINAARTAIGDTGTGQR-WIRTLPRKGVRFVGAV----REAASEV---SPGIAP 113 Query: 125 E 125 E Sbjct: 114 E 114 >UniRef50_Q1IHU2 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IHU2_ACIBL Length = 323 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN--HVVTQSISEL 75 ++ +NG +L L+ + +L +G+V++R+E+ +W + H + +I++L Sbjct: 62 GELRKNGAKLKLQEQPFQVLALLLDRAGQVVTREEIQQKLWPADTFVDFDHSLNTAINKL 121 Query: 76 RKSLKDNDEDSPVYIATVPKRGYKLMVPVIW 106 R L D + P +I T+P+RGY+ + PV W Sbjct: 122 RDVLGDTASN-PRFIETLPRRGYRFIAPVEW 151 >UniRef50_A7K1J9 DNA-binding response regulator n=13 Tax=Vibrionaceae RepID=A7K1J9_VIBSE Length = 243 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT-NHV 67 G + P ++Q+S N + +TL LL F A G V S+DEL+D+VW S +H Sbjct: 148 GPLRIIPELHQVSLNDKDVTLTATEFTLLQFLATRPGRVYSKDELLDHVWNTSHSGYHHT 207 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V +I+ LR L +D D +I TV GYK Sbjct: 208 VCSTINRLRSKLSLSDSDHH-FIQTVWGVGYKF 239 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT- 64 + +G+ +V P +++ G + L + +LL+ FA+H G SRDEL+D VW Sbjct: 140 IELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDELLDEVWGYQYSGY 199 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 +H V I+ LR + + D P Y+ TV GY+ Sbjct: 200 SHTVNTHINRLRNKI-EPDPSEPRYVKTVWGVGYRF 234 >UniRef50_A4C7M7 TolB domain protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C7M7_9GAMM Length = 689 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 2/96 (2%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RSIVTN 65 R+G + + P N + + +L+P+ I++LVF A +++R+++I+ VW V Sbjct: 8 RIGSYQINPLENTVVNQEQTNSLQPKFIEVLVFLASQHPNIVTREQIINAVWDGNGYVGE 67 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 +T +I LRK+L D YI T+ K GY+L+ Sbjct: 68 KALTNAIWHLRKTLVDKPTQQE-YIETIRKTGYRLL 102 >UniRef50_C4K826 Putative regulatory membrane protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K826_HAMD5 Length = 137 Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 3/104 (2%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G L P I + GR++ + + +LL + +SR+E+ +W ++ VT++ Sbjct: 6 IGNSLFIPKTRVIKQEGREIKIRNKESELLFLLCKKYPNHISREEIEKQIWTQTYVTDNT 65 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEE 111 +TQ+IS LR L D + I T+PK+GY L + + +E+ Sbjct: 66 LTQTISNLRNGLNDKKHE---IIITIPKKGYCLNIEPKFIDDEK 106 >UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium loti RepID=Q987X1_RHILO Length = 903 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 51/104 (49%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + R G + + ++ R+G+ L L R D+L +GEV+ +ELI VW Sbjct: 1 MDGQIFRFGPFEMHREQRRLYRDGKLLQLGSRAFDILQILVMRAGEVVRHEELIAMVWPD 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 + V + + +++ LR++L + IA VP RGY PV Sbjct: 61 TFVAENNLRVNMTALRRALGPEGSLTNGLIANVPGRGYSFTAPV 104 >UniRef50_C4UIA8 Possible regulatory protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UIA8_YERRU Length = 260 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + +G+ P I + NG ++ L + ++L + + +SRD++ +++W S VT+ Sbjct: 42 IYIGDVSFIPKIRSLELNGIEVKLRNKESEVLALLCECYPDPVSRDKIENSIWTDSYVTD 101 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + +TQ+IS LR +L D + I T+PK+GY L Sbjct: 102 NTLTQTISNLRNALNDKKHE---LIITIPKKGYCL 133 >UniRef50_A0KZR6 Transcriptional regulator domain protein n=4 Tax=Shewanella RepID=A0KZR6_SHESA Length = 716 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 12/118 (10%) Query: 8 VGEWLVTPSINQI----------SRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNV 57 +G + PS N I S +++L+P+ I++L + A V++RDELI V Sbjct: 11 LGSCRIDPSDNSILFQTQGDETSSNESAKVSLQPKFIEVLSYLALRYPHVVTRDELITQV 70 Query: 58 WK-RSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEE 114 W+ + V +T +I LR+ L D D V I TV K GY+L++P I+ ++ EE Sbjct: 71 WEGNAYVGTKALTNAIWHLRQQLLPLDVDGGV-IETVRKAGYRLLLPPIYDQLDDTEE 127 >UniRef50_B1ZTA9 Transcriptional regulator, CadC n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZTA9_OPITP Length = 584 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 2/96 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + R G + + + ++ R+L L+PR DLLV+ +H V+S+DEL+ +W IVT Sbjct: 2 IFRFGRFELDEARRELRLGPRRLELQPRTFDLLVYLVRHHERVVSKDELLQALWPGVIVT 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + V +++S +R +L+ + I T ++GY+ Sbjct: 62 DSSVMRAMSLVRSALRAG--GAANLIDTFSRQGYRF 95 >UniRef50_Q01QR8 Transcriptional regulator, CadC n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QR8_SOLUE Length = 276 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 +R G + P Q+ R G + L+P+ +L GE+++RD L +W V + Sbjct: 10 IRFGAFDFDPLTRQLRREGTPVRLQPQPAQVLGLLLASPGEIVTRDTLRTALWGTQTVVD 69 Query: 66 --HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + ++++R +L D+ DSP YI T+PKRGY+ + Sbjct: 70 FDRGLNFCVAQIRLALGDS-SDSPRYIKTLPKRGYQFI 106 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 9/93 (9%) Query: 16 SINQISR----NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-HVVTQ 70 +IN++S NG +L L P+ DLL++ + + G LSRD ++DNVW + V Sbjct: 135 TINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWGYDYFGDIRTVDT 194 Query: 71 SISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 +I LR+ L D YIATV GYK V Sbjct: 195 NIKRLREKLL----DKANYIATVRGSGYKFEVK 223 >UniRef50_A4JSN6 Transcriptional regulator, winged helix family n=5 Tax=Burkholderia RepID=A4JSN6_BURVG Length = 1032 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 4/97 (4%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++++G V I R+G L + R +D+L + SG V+S+D+++D VW IV Sbjct: 1 MIQIGTLSVDFEQRDIRRHGASLRIGARALDILEVLHRASGSVVSKDDIMDAVWPGLIVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + + ++ LRK+L N + I TVP RGY L+ Sbjct: 61 ENRLQVHVATLRKALGANRD----LIKTVPGRGYLLV 93 >UniRef50_Q7MF28 Putative uncharacterized protein VVA0492 n=1 Tax=Vibrio vulnificus YJ016 RepID=Q7MF28_VIBVY Length = 227 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 24/155 (15%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 ++ P+ ++G+ +P+ I G L R +LL + EVLSR + +WK Sbjct: 6 LEAPIYKIGDIYYSPTSAVIDNLGELSRLRAREANLLHELIKSFPEVLSRSSIEQTLWKD 65 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV-PVIWYSEEEGEEIMLSS 119 S T+ + Q++ LR +L+D + I T+PK+GY L + PV+ EE + Sbjct: 66 SYATDATINQTVKALRFTLQDVER---TLIRTIPKQGYSLAIAPVL-------EENYGTK 115 Query: 120 PPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSK 154 P P P + + +TPP+ S K + Sbjct: 116 PSPEPIKI-------------HVSTPPDDSAAKKR 137 >UniRef50_B9BNS9 Transcriptional regulator n=2 Tax=Burkholderia multivorans RepID=B9BNS9_9BURK Length = 963 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G++ + P+ ++ R + L R +++LV + +G+++ ++ L W + V + Sbjct: 11 GDFHLFPTQQRLLRGEIPIALGSRAMEILVVLIEQAGQIVDKETLTRRAWPTTFVEESNL 70 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVI 105 I+ LR++L D SP+ IA VP RGY+ PV+ Sbjct: 71 RAQIAALRRALGDG--KSPLLIANVPGRGYRFTGPVV 105 >UniRef50_C2EBW1 Two-component response regulator n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2EBW1_9LACO Length = 247 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 2/78 (2%) Query: 22 RNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV-TNHVVTQSISELRKSLK 80 ++G+ L L P+ LL + A+H G+VLSR++L+ VW I+ T+ +V IS LR L Sbjct: 161 KDGKDLQLTPKEFKLLDYLAKHCGQVLSREQLLQGVWGYDILGTSRIVDIHISHLRDKL- 219 Query: 81 DNDEDSPVYIATVPKRGY 98 + D ++P++I T GY Sbjct: 220 EADPNTPLWIKTNRGFGY 237 >UniRef50_B1KA17 Transcriptional regulator, winged helix family n=8 Tax=Burkholderia RepID=B1KA17_BURCC Length = 973 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 20/127 (15%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++++G V I R+G L + R +D+L + SG V+S+D+++D VW IV Sbjct: 1 MIQIGTLSVDFEQRDIRRHGASLRIGARALDILEVLHRASGSVVSKDDIMDAVWPGLIVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + ++ LRK+L + + I TVP RGY ++++S P P Sbjct: 61 ENRLQVHVATLRKALGASRD----LIKTVPGRGY----------------LLVASASPGP 100 Query: 125 EAVPATD 131 + VPA + Sbjct: 101 DLVPAGE 107 >UniRef50_B2TAW9 Transcriptional regulator, winged helix family n=7 Tax=Burkholderia RepID=B2TAW9_BURPP Length = 1014 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 4/101 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 ++ ++ +G + + + + R+G L L R D+L +G ++++DEL++ VW Sbjct: 33 LENDMIELGRFQIDLEMRTVRRDGEALHLGSRAFDILAVIVSAAGRLVTKDELMNAVWPN 92 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 ++V + + +S LRK L + I TVP RGY+L+ Sbjct: 93 TVVEENNIQVHLSALRKILGADRH----LILTVPGRGYQLV 129 >UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YZ11_LISDA Length = 299 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 6/80 (7%) Query: 30 EPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS--IVTNHVVTQSISELRKSLKDNDEDSP 87 E R + LL+ G +++R+ L D VW+ V + +TQ IS LRK+LKD + SP Sbjct: 39 ESRALSLLI---DEPGAIITRNRLHDYVWREQGFEVDDSSLTQCISTLRKALKDPTK-SP 94 Query: 88 VYIATVPKRGYKLMVPVIWY 107 Y+ TVPKRGY+++ V Y Sbjct: 95 EYVKTVPKRGYQMIATVEKY 114 >UniRef50_C8SMB1 Transcriptional regulator domain protein n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SMB1_9RHIZ Length = 501 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V + G + + +SR + L P+ LL A H G V+ + EL+D VW VT Sbjct: 9 VFQFGGFTLDLGKGTLSRADQPAFLRPKAYALLTHLACHIGRVVPKSELMDTVWPGVFVT 68 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLS 118 +TQS+ E+RK L + + TV KRGY ++VP E G + +++ Sbjct: 69 EDSLTQSVREIRKVLGEE------RVRTVSKRGY-MLVPETEAVPESGAQPIVA 115 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS-IV 63 VV G+ ++ ++ G +T LL + A+H G V +RD+L+D VW+ + V Sbjct: 131 VVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLLDAVWRETHYV 190 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 T V + +R+ +++N ED P Y+ TV GY+ VP Sbjct: 191 TPRSVDVYVRRIREKIEENPED-PRYLKTVRGAGYRFEVP 229 >UniRef50_Q1ZVU4 Putative uncharacterized protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZVU4_PHOAS Length = 262 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 38/174 (21%) Query: 30 EPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKD---NDEDS 86 E RL+ LL+ + E++S++EL W+ ++VT+ +T+SI+++R+SL NDE Sbjct: 35 ESRLLTLLL---ERQNEIVSKEELKTFAWEHTVVTDSSLTKSIAKIRQSLSTYFPNDE-- 89 Query: 87 PVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPP 146 IATVP+ GY+L + +SE++ E E +T PS + N Sbjct: 90 --IIATVPRVGYRLDLEKTSFSEDKLEH----------EVETSTVLPSEN----NVGYQA 133 Query: 147 EQSPVKSKRFTTFWVWFFFLLSLGICV---ALVAFSSLD--TRLPMSKSRILLN 195 ++ P K FF++ G+ V AL+A+S + +LP + L N Sbjct: 134 QKLPFKKS---------FFIIKRGLLVLSIALLAYSGFNLFRKLPNDYRKFLNN 178 >UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum RepID=Q89V41_BRAJA Length = 516 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Query: 17 INQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELR 76 + +++ G + L+P++ DLL++ V+S+D+LI +W IV++ + I+ R Sbjct: 14 LRELTCAGVAVPLQPQVFDLLLYLVAQRARVVSKDDLISQIWSDRIVSDSALNSRINAAR 73 Query: 77 KSLKDNDEDSPVYIATVPKRGYKLMVPV 104 K+L D D + I T+P++G++ + V Sbjct: 74 KALGD-DGATQRLIKTIPRKGFRFIGEV 100 >UniRef50_B7VIT9 Putative uncharacterized protein n=8 Tax=Vibrionales RepID=B7VIT9_VIBSL Length = 521 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 2/101 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 QQ + + P+ S + + + LEPR I+LL F G+ LS + +I+++W+ S Sbjct: 11 QQASIYIEGLEFNPNTRVFSCDEQVIDLEPRSIELLELFLTSVGQPLSAEYIIESIWQSS 70 Query: 62 IVTNHVVTQSISELRKSLKDN--DEDSPVYIATVPKRGYKL 100 ++ +V+T IS LR L+ + + D+ + T P++GY L Sbjct: 71 FISKNVLTNRISTLRSILQKHLPNSDATKILVTYPRKGYFL 111 >UniRef50_C4UZF9 Transcriptional regulator n=2 Tax=Yersinia RepID=C4UZF9_YERRO Length = 361 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 22 RNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKD 81 + G L + L+ +H GE+LSRDE+ D VW R ++ N+ + +I LR +L D Sbjct: 40 KTGETKRLGEYQLKLITVLLEHVGEILSRDEITDLVWHRRVIGNNSLPNAIHTLRVALGD 99 Query: 82 NDEDSPVYIATVPKRGYKL 100 ++ + I T+PK GY L Sbjct: 100 ENKQQRI-IQTIPKLGYLL 117 >UniRef50_Q0C2S9 Serine/threonine protein kinase n=2 Tax=Alphaproteobacteria RepID=Q0C2S9_HYPNA Length = 874 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 27 LTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDS 86 + LE R +++L +H+GEV++++EL+D VW+ I +V+ ++++LRK L E Sbjct: 1 MELERRPLEVLSLLLRHAGEVVTKEELLDTVWQGRITVENVLANAVAKLRKGLG---EAL 57 Query: 87 PVYIATVPKRGYKLMVPV 104 +I T + GY+ PV Sbjct: 58 AEHIRTQARIGYRFTGPV 75 >UniRef50_Q5QWN9 N-terminal winged-HTH domain fused to TolB-like domain n=1 Tax=Idiomarina loihiensis RepID=Q5QWN9_IDILO Length = 665 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 5/92 (5%) Query: 10 EWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVT 69 E+LV N +S N T+EP+++ +L+ A ++G V+S++ L VW S+ + + Sbjct: 18 EFLVDAQRNTLSVNDSVQTVEPKVMQVLLVLAANNGNVVSQEALYAEVWPNSVFSPGSIR 77 Query: 70 QSISELRKSL-KDNDEDSPVYIATVPKRGYKL 100 + I+ LRK L KDN E I T PK+GY L Sbjct: 78 RVITILRKVLSKDNQE----LIKTFPKKGYSL 105 >UniRef50_A1TAL1 Transcriptional regulator, CadC n=7 Tax=Mycobacterium RepID=A1TAL1_MYCVP Length = 436 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 4/101 (3%) Query: 4 PVVRVGEW---LVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 P RV W ++ ++ R + +EP++ D+L + G +S++EL D VW Sbjct: 32 PHRRVWRWDDFVLDVGCYELRRGDTMIRVEPQVFDVLAQLVSNHGRFVSKEELFDTVWGG 91 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 V +T I +R++L D+ E + YI TV RGY+ + Sbjct: 92 RFVGEAALTSRIKAVRRALGDDGE-AQRYIRTVRGRGYQFV 131 >UniRef50_Q2NVH3 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NVH3_SODGM Length = 251 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 28/205 (13%) Query: 35 DLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVP 94 ++L + + E +D VW VT+H + Q I LRK LK N ++ I T+P Sbjct: 45 EVLALLCRKYPNPVHHSEFLDEVWGGGYVTSHSIAQVIRSLRKLLKKNGKN---IILTIP 101 Query: 95 KRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSK 154 K GY+L + + +EG E+ + A + S ++ +TPP + S Sbjct: 102 KLGYRLGIEPQY---DEGNEVKIFDFSQENAGNSAEEDYFVSSGDRHPSTPPPRLYQTSG 158 Query: 155 RFTTFWVWFFFLL--------SLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNK 206 + WFF LL S G+ L M KS++ P+D +I M+ Sbjct: 159 KVVK---WFFRLLIFMLLFPASYGVYCGL-----------MPKSQVFHQPKDKEILMIIP 204 Query: 207 SCNSWSSPYQLSYAIGVGDLVATSL 231 + Y I GD+ T++ Sbjct: 205 RSGIKDVEVKDDYVILYGDITKTAM 229 >UniRef50_Q1MK68 Putative adenylate cyclase n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MK68_RHIL3 Length = 522 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 10/98 (10%) Query: 23 NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDN 82 NG + L P+ +L Q++ ++S+ EL++ VW + VT+ + Q I E+R++L D Sbjct: 43 NGDAIALRPQAFAVLRHLVQNANRLVSKAELLEAVWGGAAVTDDSLVQCIHEIRRALGD- 101 Query: 83 DEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 + +ATV +RGY+L S E +E L P Sbjct: 102 --ERYAVLATVSRRGYRL-------SLERSDESALGGP 130 >UniRef50_A8IBN1 DNA-binding response regulator n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8IBN1_AZOC5 Length = 254 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V+R G + + Q NG ++TL R DLL+ A+ +G V+S DE+ VW V+ Sbjct: 17 VLRAGPLEIHATARQAFVNGARITLGSRAFDLLLMLAEAAGRVVSHDEIQARVWPNRHVS 76 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + +S LR++L + ++TVP RGY Sbjct: 77 ETNLRVQVSTLRRALGEARH----VVSTVPDRGYAF 108 >UniRef50_UPI00017F4CF5 two-component response regulator n=2 Tax=Clostridium difficile RepID=UPI00017F4CF5 Length = 124 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ ++ G +++ S ++ ++G+ + L + + +L FA + +++S+++L D VW Sbjct: 21 EEKIISFGPYILNESRAELIKDGKSIGLSAKELKILSLFAHNQNQIISKEKLWDKVWGED 80 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V ++ + I ++R+ L+DN P YI T+ GYKL V Sbjct: 81 YVGFDNTIMVHIRKIREKLEDN-PSKPEYILTIKGLGYKLAV 121 >UniRef50_A6BKE3 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A6BKE3_9FIRM Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW--KRSIVTN 65 GE ++ P Q+ +N +++ L R LL + + G VL+++ +++ VW V + Sbjct: 125 CGEIILFPDKKQVYKNEKEIILTAREYQLLEYLMYNQGNVLTKENILEYVWGLDGQFVVD 184 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + V+ +I+ LRK + + D SP+Y+ V GYKL Sbjct: 185 NTVSVTINRLRKKI-ETDAGSPIYLKNVFGLGYKL 218 >UniRef50_C8X3Y5 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3Y5_DESRD Length = 236 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-R 60 Q+PVVR GE V + + + L R +L + +H G V+SR EL++NVW+ Sbjct: 134 QEPVVRFGENTVNFATLRAQTRKEEFQLTAREAMVLKYLIEHEGRVVSRKELLENVWQVE 193 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 V V I+ LRK + D P +I +V + GY+ + Sbjct: 194 GTVQTRTVDAFIARLRKYF-EADPKHPEFITSVREVGYQFL 233 >UniRef50_C6IXU0 Transcriptional regulator domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXU0_9BACL Length = 265 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 20 ISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-HVVTQSISELRKS 78 + R G ++ L +LL+ +H G VLSR+EL+ VW + + +VV I LRK Sbjct: 183 VYRGGIKIELTKTEFELLIKLLEHEGTVLSREELLSEVWGTTFLGGSNVVDVHIKSLRKK 242 Query: 79 LKDNDEDSPVYIATVPKRGYKL 100 L DN P YI TV GY+L Sbjct: 243 LGDN-ASRPTYITTVRGVGYRL 263 >UniRef50_B1J1E8 Two component transcriptional regulator, LuxR family n=3 Tax=Pseudomonas putida RepID=B1J1E8_PSEPW Length = 330 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 5/101 (4%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++R+G V+ + +G+ + L R ++L + G V+ +DEL VW ++V Sbjct: 1 MIRLGNAQVSLERREAFVDGKPVPLGGRAFEVLATLIKAKGRVVGKDELFSEVWAGTVVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVI 105 ++ + IS LRK+ +P I TVP+RGY+L V V+ Sbjct: 61 DNNLQVQISLLRKAF-----GAPGLIQTVPRRGYRLAVDVV 96 >UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vibrio fischeri RepID=B5FBZ3_VIBFM Length = 293 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 6/74 (8%) Query: 30 EPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS--IVTNHVVTQSISELRKSLKDNDEDSP 87 E R++ LL+ Q G+V+SR EL + VW+ V + +TQ+IS LRK L+D + P Sbjct: 39 ESRVLSLLI---QEPGKVVSRHELHEYVWRDQGFEVDDSSLTQAISTLRKMLQDPTK-LP 94 Query: 88 VYIATVPKRGYKLM 101 VY+ TVPKRGY+ + Sbjct: 95 VYVKTVPKRGYQFI 108 >UniRef50_C7QIF5 Uroporphyrinogen III synthase HEM4 n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QIF5_CATAD Length = 391 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK 77 N + +GR + L P +L A+ G VLSR EL+ VW H V +++ LR Sbjct: 308 NAVLIDGRPVPLSPLPAGVLRELARQPGRVLSRAELLRRVWTGMRRDEHAVEATVARLRT 367 Query: 78 SLKDNDEDSPVYIATVPKRGYKLMV 102 SL ++ + +ATV KRGY+L V Sbjct: 368 SLGEHAD----VVATVTKRGYRLAV 388 >UniRef50_Q3AVF0 Response regulator receiver domain protein (CheY-like) n=2 Tax=Synechococcus RepID=Q3AVF0_SYNS9 Length = 227 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 3/87 (3%) Query: 15 PSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RSIVTNHVVTQSIS 73 PS ++ R GR L L R LL+ QH G VLSRD+L+ VW+ + +VV + Sbjct: 136 PSTREVWRGGRALDLTTREFMLLLTLLQHQGRVLSRDQLLQQVWQDERASSGNVVEVYVR 195 Query: 74 ELRKSLKDNDEDSPVYIATVPKRGYKL 100 LR+ L+ E ++ TV RGY L Sbjct: 196 YLRQKLEAEGEGRLLH--TVRGRGYCL 220 >UniRef50_Q9RFS1 Transmembrane regulatory protein ToxR (Fragment) n=1 Tax=Grimontia hollisae RepID=Q9RFS1_VIBHO Length = 193 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 34/134 (25%) Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGE--------- 113 V + +TQSIS LRKSLKD+ + SP+++ TVPKRGY+++ V Y+E+E E Sbjct: 6 VDDSSLTQSISTLRKSLKDSTK-SPMFVKTVPKRGYQVVCSVEVYNEQEVELPEPAASVI 64 Query: 114 -EIMLSSPP-----------PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWV 161 E P P+P+AV P S N AT P + P+ S Sbjct: 65 DETAAKKEPELLSDNTAQTLPLPDAVAEQTEPKVSTN----ATAPAKMPLGS-------- 112 Query: 162 WFFFLLSLGICVAL 175 W +L+L + +A Sbjct: 113 WVALVLTLLVPLAF 126 >UniRef50_B7RJ24 Putative regulatory protein, possibly two-component response regulator n=1 Tax=Roseobacter sp. GAI101 RepID=B7RJ24_9RHOB Length = 521 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 23 NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDN 82 GR +EPR LL H ++++DE+++NVW IV++ + I RK L D Sbjct: 20 GGRDAPIEPRAFKLLALLVTHHDRIVTKDEIVENVWDGRIVSDAAIATVIKTTRKVLSD- 78 Query: 83 DEDSPVYIATVPKRGYKL---MVPVIWYSEEEGEEIMLSSPPPIPEA 126 D Y+ T+ RG + ++P + +E E + P P+ A Sbjct: 79 DGVGQKYLRTIRGRGVRFVGTLMPSL-AAEARKPETDQAQPAPVQTA 124 >UniRef50_D0WLW8 DNA-binding response regulator RegX3 n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WLW8_9ACTO Length = 262 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK 77 +++S +G ++ L DLL + + G V+ + EL++ VW ++ + + + LR+ Sbjct: 147 SRVSVDGAEIPLAAMEFDLLAYLVANRGRVVEKRELLNKVWGGAVTGDGTLAVHVRRLRR 206 Query: 78 SLKDNDEDSPVYIATVPKRGYKL 100 + + D D+PVYI TV RGY+ Sbjct: 207 RI-EPDPDNPVYICTVWGRGYRF 228 >UniRef50_Q39G50 Transcriptional regulator, winged helix family n=11 Tax=Burkholderia RepID=Q39G50_BURS3 Length = 877 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 7/118 (5%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++R+G V +I NG L + R D+L + GEV+S+DE++ VW ++V Sbjct: 1 MIRIGPLHVLLEKREIRLNGEPLRIGNRAFDVLELLIEAEGEVVSKDEIMRRVWAHTVVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 + + I+ LRK+L + I T RGY+L V + E+E + +S P Sbjct: 61 ENNLQVQIATLRKALGADRG----RIVTAAGRGYRL---VAVHDEDETSALAQTSRCP 111 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 5/98 (5%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI-VTNH 66 VG+ +V PS +++ +G+++TL + +LL F + G++ +RD+L++ +W T Sbjct: 148 VGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRIWGYDFEGTTR 207 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 V I LR+ L D + +I T+ + GYK V V Sbjct: 208 TVDTHIKTLRQKLGDEGK----HIVTLIRSGYKFEVAV 241 >UniRef50_Q1MK13 Putative transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MK13_RHIL3 Length = 968 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G +++ P + R+ + + R +++L + GE++ + EL+ VW + V + Sbjct: 7 GPYVLVPERQSLMRDQTAVRVGSRALEILAALIERPGELVGKAELVSRVWPDTFVEESNL 66 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 +++ LR++L D D YIATV RGY+ + PV Sbjct: 67 KVNVAALRRALGDAPGDMQ-YIATVSGRGYRFVFPV 101 >UniRef50_A2W5F3 Putative uncharacterized protein n=1 Tax=Burkholderia cenocepacia PC184 RepID=A2W5F3_9BURK Length = 997 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 4/101 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + ++++G V I R+G L + R +D+L + SG V+S+D+++D VW Sbjct: 89 EAAMIQIGTLSVDFEQRDIRRHGASLRIGARALDILEVLHRASGSVVSKDDIMDAVWPGL 148 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 IV + + ++ LRK+L + + I TVP RGY L+ Sbjct: 149 IVEENRLQVHVATLRKALGASRD----LIKTVPGRGYLLVA 185 >UniRef50_C1F5C9 Putative transcriptional regulatory protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F5C9_ACIC5 Length = 692 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 4/106 (3%) Query: 2 QQPVV-RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 Q+P V +L +++RN + + +++DLL + SG +++R+++ +W Sbjct: 4 QEPTVFSFAAYLYDAENRRLTRNQVPIRINRQMLDLLDLLVRSSGRLVTREQIQKTLWPG 63 Query: 61 SIVTN--HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 + N +T +++ LR L DN P YI +VP+ GY+L+ P+ Sbjct: 64 QFLDNSEKRITNAVARLRHILGDN-SSRPRYIESVPRTGYRLIAPI 108 >UniRef50_B9XFI9 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XFI9_9BACT Length = 226 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V G+ + + +++ + G+++ L + LL FFA G L+RD+++D VW IV Sbjct: 129 VFEFGDCKLDLAAHKLYQGGKEIELTTKEFRLLEFFATRPGRALTRDQILDGVWGNDIVV 188 Query: 65 N-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 N V + ++ LR ++ N PV I T+ GY+ Sbjct: 189 NDRSVDRCVTTLRAKIETNPH-QPVLIQTIRDVGYRF 224 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 3/103 (2%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + + V+ G+ + +++ R R++ L P LL + QH G V SR++L+D VW Sbjct: 127 LAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWGS 186 Query: 61 SI-VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + V V + LRK+L + +E P I TV GY V Sbjct: 187 DVYVEARTVDVHVGRLRKALNNKEERDP--IRTVRSAGYAFDV 227 >UniRef50_Q01WH4 Transcriptional regulator, CadC n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01WH4_SOLUE Length = 616 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 3/100 (3%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G + V P + R + L L P+ + L+ ++ G ++ + E++ +W S V + Sbjct: 29 GPFRVLPCERVLRRGDQTLPLPPKAFETLLLLVRNPGHLMRKGEMMKALWPDSFVEEVNL 88 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV--IW 106 +IS +RK+L D+ D YI TVPK GY+ + V +W Sbjct: 89 ANNISLVRKTLGDSAGDCG-YIQTVPKLGYRFLPAVTGVW 127 >UniRef50_A4EHZ3 Integral membrane protein-like n=1 Tax=Roseobacter sp. CCS2 RepID=A4EHZ3_9RHOB Length = 675 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 3/77 (3%) Query: 24 GRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDND 83 G Q++L P+ +L + G+ +++D+LI VW+ VT+ +TQ I+++R++L D D Sbjct: 26 GNQVSLRPQSAQVLSLLVDNIGQTVTKDDLISTVWQDVSVTDDSLTQCIADVRRALGDTD 85 Query: 84 EDSPVYIATVPKRGYKL 100 + T PK GY+L Sbjct: 86 RR---ILKTRPKVGYQL 99 >UniRef50_C4U9W3 Transcriptional regulator n=1 Tax=Yersinia aldovae ATCC 35236 RepID=C4U9W3_YERAL Length = 265 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 34 IDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATV 93 + L+ +H+G++LSR++L VWKR ++ N+ + +I LR +L D ++ + I T+ Sbjct: 61 LKLISVLLEHAGQILSREQLTTLVWKRRVIGNNSLPNAIHTLRMALDDKNKQQRI-IQTI 119 Query: 94 PKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 PK GY L E+ E + S P+ Sbjct: 120 PKMGYLLDTSFCELIEKSAEAELESPTEPM 149 >UniRef50_Q251C7 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q251C7_DESHY Length = 231 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 V +GE ++ P +++ R + L P+ ++ A H G+V +R++LID +W + T Sbjct: 135 VEIGELIIDPFRYEVTVRDRLVNLTPKEYQIIALMANHPGKVFTREDLIDCIWGKEFETG 194 Query: 66 HV-VTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + + I +R+ + + D P + TV + GYKL Sbjct: 195 SISIPVYIRRIREKI-EQDPSEPTLLKTVWRFGYKL 229 >UniRef50_Q1J251 Two component transcriptional regulator PhoB n=5 Tax=Deinococci RepID=Q1J251_DEIGD Length = 229 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Query: 24 GRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-HVVTQSISELRKSLKDN 82 G +L L R DLL F Q++G V +R EL+D VW + V Q +++LR L D Sbjct: 146 GIRLHLTRREFDLLAFLTQNAGRVYTRTELLDRVWGADFLGGERTVDQHVTQLRAHLGD- 204 Query: 83 DEDSPVYIATVPKRGYKL 100 D P ++ TV +GY++ Sbjct: 205 DPARPRFLETVRGKGYRM 222 >UniRef50_A8MLN3 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A8MLN3_ALKOO Length = 231 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Query: 36 LLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPK 95 L+ FF ++ G+V ++++L +N+W SI+ ++ + I +LRK L+DN + SP +I TV Sbjct: 166 LIKFFMENPGQVFTKEQLYENIWNNSIIDDNAIMVYIHQLRKKLEDNVK-SPKHIVTVWG 224 Query: 96 RGYKLM 101 GYK + Sbjct: 225 IGYKFI 230 >UniRef50_D0AFB3 Putative uncharacterized protein n=4 Tax=Firmicutes RepID=D0AFB3_ENTFC Length = 103 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Query: 20 ISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-HVVTQSISELRKS 78 + + G ++ L + DLL F H G+V ++++L NVW + N + +T I +LRK Sbjct: 18 VDKQGSRIYLTAKEFDLLYFMYSHKGQVFTKEQLYQNVWGDDDIPNANNMTSFIRKLRKK 77 Query: 79 LKDNDEDSPVYIATVPKRGYKL 100 ++ N D+P YI TV GYK Sbjct: 78 IEPN-PDNPQYILTVWGVGYKF 98 >UniRef50_Q1IIR6 Transcriptional regulatory protein-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIR6_ACIBL Length = 469 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 19/179 (10%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT- 64 +R G + ++ + G ++ L + D+L GE+++RDEL + +W + Sbjct: 10 LRFGPYEADLHTRELWKFGTRVKLVGQPFDILELLISRPGELVTRDELRERLWPKETFVD 69 Query: 65 -NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 NH + ++++LR L D+ +D P +I T+P+RGY+ + V E G E PI Sbjct: 70 FNHGLNAAVNKLRDVLCDSADD-PKFIETLPRRGYRFISKV-----ERGVE------EPI 117 Query: 124 PEAVPATDSPSHSLNIQNTATPPE-QSP---VKSKRFTTFWVWFFFLLSLGICVALVAF 178 P A + +P A P +SP V+ T W W L L + +A +AF Sbjct: 118 PVAETSPPTPLVVPTPAELAPEPRYESPAITVERSLGRTKWSWGAAAL-LMVVIAFIAF 175 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW-KRSIVTNHV 67 GE + +++R G+ ++L + LL A+++G V S + L D++W K S Sbjct: 140 GELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLFDSIWGKDSFGDIRT 199 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V IS LRK + + D P YI TV GYK Sbjct: 200 VMVHISNLRKKI-EQDPARPEYIITVRGMGYKF 231 >UniRef50_UPI0001C424C1 hypothetical protein BpOF4_12950 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424C1 Length = 377 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 25 RQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDE 84 +QLTL P+ DLL F +H +V SRD+L+D VW T+ V I +RK L Sbjct: 18 QQLTLLPKEFDLLHFLYRHPNQVFSRDKLLDAVWGEGTPTDRTVDDHIYRVRKKL--GTL 75 Query: 85 DSPVYIATVPKRGYKLM 101 S + I T+ +GY L+ Sbjct: 76 KSGIKINTIRGQGYCLI 92 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK 77 ++ G Q++L + +LL+F A H G V +++EL VW + VT + +R Sbjct: 141 RRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAAVWNGDGFDSRTVTVHVKNVRH 200 Query: 78 SLKDNDEDSPVYIATVPKRGYKLM 101 LKD + P YI TV GYK + Sbjct: 201 KLKDGTK-HPKYIETVWGVGYKFI 223 >UniRef50_B5ZTP7 Transcriptional regulator, CadC n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2304 RepID=B5ZTP7_RHILW Length = 479 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 5/77 (6%) Query: 22 RNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKD 81 R GR + + + + +L + ++ G V+S+DEL+ VW IVT +TQ+IS++RK++ Sbjct: 2 RRGRDVEIGAKPLAMLTYLVRNEGRVVSKDELMQAVWPGVIVTEDSLTQAISQIRKAIGA 61 Query: 82 NDEDSPVYIATVPKRGY 98 + I T+ +RGY Sbjct: 62 DG-----LIRTLFRRGY 73 >UniRef50_C6JFQ6 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFQ6_9FIRM Length = 139 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 19 QISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH-VVTQSISELRK 77 ++ R+ R++ L ++L AQ+ G V S++++ D VWK S ++ +V IS +R+ Sbjct: 51 EVVRDNRKIELTYTEFEILQLLAQNPGRVFSKEQIYDIVWKESYFGDYNIVMSHISHIRE 110 Query: 78 SLKDNDEDSPVYIATVPKRGYKL 100 ++D D +PVYI TV GYK Sbjct: 111 KIED-DPGNPVYIQTVWGVGYKF 132 >UniRef50_B5ZPU5 Transcriptional regulator domain protein n=11 Tax=Rhizobiales RepID=B5ZPU5_RHILW Length = 502 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 MQ G +++ P+ + RN + + R + LL GE+L + EL+D W Sbjct: 1 MQASRFAFGPFVLDPAAGTLLRNDDPVAVGDRGVKLLAALVGRPGEILGKAELMDAAWPG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V +T I++LRK L D +IATVP+ GY+ Sbjct: 61 RAVEEGNLTVQIAQLRKLLGPA-ADGGEWIATVPRVGYRF 99 >UniRef50_C1A8B6 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8B6_GEMAT Length = 245 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 4/96 (4%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW--KRSIVT 64 R G + S ++ G + L PR DLLV + G + SR+EL+ VW S+V+ Sbjct: 149 RFGNVAIDLSTRSVTLEGSAVMLRPREYDLLVALVRRDGAIASREELLREVWGYDDSVVS 208 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V T ++ELR+ L + D P ++ TV K GY++ Sbjct: 209 RTVDTH-MAELRRKL-ETDPSEPRWLLTVRKTGYRM 242 >UniRef50_D1TNN3 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TNN3_9BURK Length = 489 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK 77 Q+ R+G+ + R D+L + +G+++++DE++ VW + V + + IS LRK Sbjct: 14 RQVFRDGQAQPIGARAFDILELLIRSAGKLVTKDEIMRLVWPTTFVVENNIQVHISALRK 73 Query: 78 SLKDNDEDSPVYIATVPKRGYKLMVP 103 D +I TVP RGY+L P Sbjct: 74 LFGDG------WIRTVPGRGYQLRTP 93 >UniRef50_C4IFN3 Transcriptional regulator n=15 Tax=Bacteria RepID=C4IFN3_CLOBU Length = 167 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS-IV 63 V++ E + + +GR + L P+ ++L F AQ+ G V +++++ + VW + Sbjct: 68 VLKFNELEINAKNRTVQESGRAIVLTPKEFEILYFLAQNQGTVFTKEQIYNAVWDEDYFL 127 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 ++ + I +LRK ++ N D P+YI T+ GYK Sbjct: 128 SDSNIMAFIRKLRKKIEPN-PDEPIYIITIWGVGYKF 163 >UniRef50_B4CVJ4 Transcriptional regulator, CadC n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVJ4_9BACT Length = 598 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK 77 ++ R L L+PR+ DLLV+ ++ V+S+DEL+D +W V + + ++IS R Sbjct: 15 RELRTGNRVLPLQPRVFDLLVYLVKNRDRVVSKDELLDTLWADVTVADGSLQRAISLART 74 Query: 78 SLKDNDEDSPVYIATVPKRGYKLM 101 +L + D+ I T ++GY+ Sbjct: 75 ALAEA--DAADMIRTYARKGYRFC 96 >UniRef50_C5CZM5 Transcriptional regulator, winged helix family n=3 Tax=Variovorax paradoxus S110 RepID=C5CZM5_VARPS Length = 953 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 2/96 (2%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66 R G ++V + ++ R G+ + L R +LL+ + GEV+ +DEL+ VW +V Sbjct: 27 RFGAFIVWEAQRRLERLGQSVRLGSRSFELLLQLLRRVGEVVGKDELLATVWAGVVVEES 86 Query: 67 VVTQSISELRKSLKD--NDEDSPVYIATVPKRGYKL 100 V IS LRK+L + + ++ +I+ +P RGY+ Sbjct: 87 SVRVHISALRKALGEPQDGDNCKEWISNIPLRGYRF 122 >UniRef50_C5D0W4 Transcriptional regulator, CadC n=1 Tax=Variovorax paradoxus S110 RepID=C5D0W4_VARPS Length = 188 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK 77 Q+ + G + L P+ LL FF + ++ + EL+D++W +VT+ + I ELR Sbjct: 41 GQLRQGGTLIPLSPKPDALLRFFLANPQRLIGKTELMDSLWPDVVVTHDSLVHCIGELRS 100 Query: 78 SLKDNDEDSPVYIATVPKRGY 98 L D+ IAT P+RGY Sbjct: 101 RLGDHGA---TLIATSPRRGY 118 >UniRef50_C5AMA9 Transcriptional regulator, winged helix family protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5AMA9_BURGB Length = 979 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 4/96 (4%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 +V++G V ++ R+G L L R D+L + +G V+S+D L++ VW IV Sbjct: 1 MVQIGALHVDFERREVRRHGEGLRLSARAFDILDVLFRANGAVVSKDALLEAVWPNQIVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + + ++ LRK+L + E I T+ RGY+L Sbjct: 61 ENRLQVHVAALRKALHADRE----LIRTITGRGYRL 92 >UniRef50_B0UQ98 Transcriptional regulator domain protein n=4 Tax=Rhizobiales RepID=B0UQ98_METS4 Length = 510 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 16/129 (12%) Query: 22 RNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKD 81 R+G + L PR + +L +G +S++EL W V + +T I+ LR++L Sbjct: 21 RDGAPVALGPRAVAVLQALVARAGAPVSKEELFRVAWPDLAVEDSNLTVQIAALRRALA- 79 Query: 82 NDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPA-TDSPSHS-LNI 139 ED +I T+P+RGY+ + PV + P +P +P D PS + L + Sbjct: 80 GSEDGARWIETLPRRGYRYVGPV-------------GAAPSMPPVMPRFPDRPSVAVLPL 126 Query: 140 QNTATPPEQ 148 +N + P + Sbjct: 127 RNLSGDPAE 135 >UniRef50_A4X1M5 Two component transcriptional regulator, winged helix family n=2 Tax=Salinispora RepID=A4X1M5_SALTO Length = 251 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 2/101 (1%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 P V +G + P+ +++ +GR ++L + LL FF H+ +SR++L+ VW S Sbjct: 141 PPVELGGLRMEPATYEVTLHGRPVSLPLKEFRLLYFFMTHADRTVSREQLLSAVWDGSTG 200 Query: 64 -TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 +++ +T I LRK L+ E P+ I TV GY+ P Sbjct: 201 ESSNTLTVHIKRLRKRLEAEGEPQPLII-TVRGLGYRFTPP 240 >UniRef50_Q28L26 Transcriptional regulatory protein-like protein n=1 Tax=Jannaschia sp. CCS1 RepID=Q28L26_JANSC Length = 527 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 10/116 (8%) Query: 19 QISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKS 78 Q++R + EP+ ++ L+F AQ+ G++L++D L + W +V++ ++ + R++ Sbjct: 16 QLARGDELIETEPQTLEFLIFLAQNQGQMLTKDTLHEVFWPDRVVSDAALSTLVRNARRA 75 Query: 79 LKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPS 134 + D+ E V IAT RG+ V +S+ + P +P +V A +PS Sbjct: 76 IGDSGEQQRV-IATRHGRGFVFRADVREFSDPQ--------PAAMPRSVAAA-APS 121 >UniRef50_C9NME3 Putative transcriptional activator ToxR n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NME3_9VIBR Length = 255 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 10/118 (8%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK 77 N++S R + + R +L +HS EV+ + +++ + W + + +SIS LR+ Sbjct: 9 NKLSNTQRVIKIGYREAQVLDLLLKHSPEVVKKHDIVQHAWGSEYIGETSLAKSISTLRQ 68 Query: 78 S-LKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPS 134 + LK ++SP I TVPK GY+L+ I Y+ E PP I ++ PA + P+ Sbjct: 69 ALLKLGAKESP--IVTVPKVGYRLVSHSIEYAPAE-------PPPQIDKSNPAPNLPT 117 >UniRef50_UPI00019732E7 DNA-binding response regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI00019732E7 Length = 236 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN--H 66 G ++ P Q+S NG +L L + DLL A H G+VLSR++L VW + V N Sbjct: 137 GNLVIDPIGRQVSLNGEELQLTRKEFDLLFCLASHVGQVLSREQLYQMVWDENSVYNVDE 196 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V I LRK L + + YI V GY+ Sbjct: 197 TVKAHIKSLRKKLTPSGAE---YIKNVWGIGYRF 227 >UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bacteria RepID=C0A842_9BACT Length = 263 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 20 ISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK---RSIVTNHVVTQSISELR 76 ++R GR + L PR DLL + + H GE +SRD+L +W+ R+ ++V+ I+ LR Sbjct: 149 VTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQLAREIWRENNRATPIDNVIDVHIARLR 208 Query: 77 KSLKDNDEDSPVYIATVPKRGYKL 100 + + + + + T+ GY L Sbjct: 209 RKIDEASPGAEKLLHTLRGLGYML 232 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 2/97 (2%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RSIVTNHV 67 G+ + + RNG+ + L P+ DLL F ++G LSRD ++ VW S VT Sbjct: 134 GDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWGYDSRVTPRS 193 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 + + ++ LR + + D P + TV + GYK +P+ Sbjct: 194 IDRFVNALRNKI-EPDPAEPRILKTVREFGYKFELPM 229 >UniRef50_A5L7Z6 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L7Z6_9GAMM Length = 294 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 24/210 (11%) Query: 23 NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDN 82 N + L P+ +L++ H+G +S+DEL W +IV++ +T +IS LRKSLK Sbjct: 27 NKTLIKLRPKPFRVLLYLHNHNGRCVSKDELFSECWNGAIVSDQSLTNTISTLRKSLK-T 85 Query: 83 DEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLN--IQ 140 + TV K GY L S EE E L + + + D+ + +++ Sbjct: 86 IGIKKTKLTTVSKAGYLLE----KISNEELPEPHLPTETSLTSEIQEDDTIAAAIDGATS 141 Query: 141 NTATPPE----QSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNP 196 + P E Q T ++ F+L L I +S R N Sbjct: 142 EVSVPVEVIDNQELANKPHETLVYLKKLFMLMLAIT-------------SLSLIRGCYNT 188 Query: 197 RDIDINMVNKSCNSWSSPYQLSYAIGVGDL 226 +I+ NM + ++ + Y L G+ DL Sbjct: 189 NNINKNMTQRLVSTENISYNLVDHTGMLDL 218 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 3/96 (3%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH- 66 +G + P +++ NG +TL P+ ++L++ A+ G V++RD+L++ VW + Sbjct: 140 LGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRDDLMNAVWGFDYIGGQR 199 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V +S LRK L+ + + V+I ++ GYKL+V Sbjct: 200 TVDVHVSSLRKKLELDPQS--VHIDSIRGVGYKLVV 233 >UniRef50_D2T7N3 Probable regulatory protein embR n=3 Tax=Erwinia RepID=D2T7N3_ERWPY Length = 299 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 1/78 (1%) Query: 23 NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDN 82 +G Q L + LL A+++G+ +SR+EL + VW+R ++ N+ + +I LR +L+D+ Sbjct: 24 SGEQRRLGEYQLKLLRVLAENAGKAVSREELNNLVWERRVIGNNSLPNAIHALRIALEDD 83 Query: 83 DEDSPVYIATVPKRGYKL 100 + + I T+PK+GY L Sbjct: 84 GKQQRI-IRTMPKKGYIL 100 >UniRef50_C7BJM7 Putative uncharacterized protein n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BJM7_PHOAA Length = 178 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 20 ISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSL 79 IS +++TL R LL F ++ EV+++ ++ ++VW IV +T+++S LRK+L Sbjct: 19 ISSTVQEITLGSREASLLELFCKNPNEVINKTQIHESVWGAVIVNETSLTKAVSNLRKAL 78 Query: 80 KDNDEDSPVYIATVPKRGYKLMV 102 D D I T+PK GY ++ Sbjct: 79 SGFD-DLTCEIKTIPKEGYIFII 100 >UniRef50_B7VRN4 Putative uncharacterized protein n=2 Tax=Vibrio splendidus RepID=B7VRN4_VIBSL Length = 265 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 4/98 (4%) Query: 11 WLVTPSINQISRN---GRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 W++ P++ + N G L +L +H G +S+ L + W +V+ Sbjct: 12 WILNPTLRRQLTNKNDGTSKKLHSTDCKILETLCKHKGRTVSKSALTNAAWPGRVVSKAS 71 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVI 105 +TQSI+ LR +L DN + + I TVPK GY L+ ++ Sbjct: 72 LTQSIAHLRIALGDNGREQNI-IKTVPKHGYSLVEDLV 108 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 23 NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-HVVTQSISELRKSLKD 81 G L+L P DLL++ AQ++G VLSRD L+D VW + V + LR+ L Sbjct: 158 KGETLSLSPLEYDLLLYLAQNAGRVLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSR 217 Query: 82 NDEDSPVYIATVPKRGYKLMV 102 Y+ TV GYK V Sbjct: 218 ISPAVASYVGTVRGSGYKFEV 238 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 19 QISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-HVVTQSISELRK 77 +++R G+ +TL R LL + H GE ++R++L+ VW S T+ V ++ LR+ Sbjct: 145 EVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQVWGYSATTDTRTVDVHVAWLRQ 204 Query: 78 SLKDNDEDSPVYIATVPKRGYKL 100 L++N + P Y+ TV GYKL Sbjct: 205 KLEENPK-YPRYLQTVRGLGYKL 226 >UniRef50_Q2SFI0 FOG: TPR repeat n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SFI0_HAHCH Length = 741 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 42/76 (55%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66 ++G+W V P N+++ +++L P+ + L+ + G L ++L + +W S + Sbjct: 13 KIGDWWVDPEANKLADQDCEISLTPKAMTALLALVEAQGRSLGEEQLQEKIWSSSAQPDA 72 Query: 67 VVTQSISELRKSLKDN 82 V Q IS+LRK+ DN Sbjct: 73 SVDQIISQLRKAFGDN 88 >UniRef50_A3PUD7 Two component transcriptional regulator, winged helix family n=6 Tax=Mycobacterium RepID=A3PUD7_MYCSJ Length = 237 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 VG ++ + ++ +GR ++L R DLL+FF H+ V +R+EL+ VW+ Sbjct: 134 VGALTISAAARSVTVDGRPVSLTNREFDLLLFFITHADTVFTREELLKQVWRWDFGDLST 193 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGY 98 VT + LR L D + TV RGY Sbjct: 194 VTVHVKRLRSKLGDQHR-----VQTVWGRGY 219 >UniRef50_Q5SMC3 Response regulator n=4 Tax=Deinococci RepID=Q5SMC3_THET8 Length = 223 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 23 NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI-VTNHVVTQSISELRKSLKD 81 G L L P ++LL+ FAQ G V +R EL++ VW + VV + LRK L+D Sbjct: 143 EGEPLRLSPTEMNLLLVFAQAPGRVFTRGELLERVWGPEFEGSERVVDAYVRLLRKKLRD 202 Query: 82 NDEDSPVYIATVPKRGYKLM 101 D ++P +I TV GY+ + Sbjct: 203 -DPEAPRFIETVVGLGYRFL 221 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 4/105 (3%) Query: 1 MQQP-VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK 59 +++P V+R+G+ + P+ +++ R G L L + LL +H EVL+R ++D+VW Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 60 RSI-VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + T+++V Q + +R+ + + D P I TV GY+L P Sbjct: 210 FAFDGTSNIVDQYVRYVRRKI--DIPDGPSLIETVRGVGYRLRTP 252 >UniRef50_C8S437 Transcriptional regulator, CadC n=1 Tax=Rhodobacter sp. SW2 RepID=C8S437_9RHOB Length = 515 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 4/84 (4%) Query: 20 ISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSL 79 I R+G + L + LL + QH+G+VL+++ L+ VW V++ +TQ + ++R++L Sbjct: 23 IGRDG-DVALRRKSFVLLCYMTQHAGQVLTKERLMSAVWPEVTVSDDSLTQCVHDVRRAL 81 Query: 80 KDNDEDSPVYIATVPKRGYKLMVP 103 + + TV RGY L++P Sbjct: 82 GGSGASE---LRTVQGRGYLLVLP 102 >UniRef50_Q488W3 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q488W3_COLP3 Length = 260 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RSIVTNH 66 +G+ LV +Q++ + + L +L+ FF QH +V SR +L+D VW H Sbjct: 155 IGQLLVDHRFHQVTYKNKAINLTVTEFELIDFFCQHPDQVFSRAQLLDGVWGYHHNGYEH 214 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V I+ LR L++ D P I TV GYKL Sbjct: 215 TVNSHINRLRSKLEE-DCTEPKIIQTVWGVGYKL 247 >UniRef50_C2E0K8 Response regulator PhoP n=9 Tax=Lactobacillus RepID=C2E0K8_9LACO Length = 238 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + ++ G + + + +N + L P+ LLV+ AQ+ G V+SR++L+ +W + Sbjct: 140 EEIIETGNIKININKYSVFKNNEPVVLTPKEFQLLVYLAQNKGNVISREQLLQKIWGYDL 199 Query: 63 V-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + ++ +V IS LR L+D D P +I T GY+ + Sbjct: 200 LGSSRIVDIHISHLRDKLED-DSSHPQHILTKRGFGYRFI 238 >UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Tax=Proteobacteria RepID=A6UHF5_SINMW Length = 531 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 14/142 (9%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK 77 +++ G+ +++ P++ DLL+ V+S+DEL+ VW IV+ +T I+ +RK Sbjct: 15 RELTLRGQVVSVGPQVFDLLLHLVGTRDRVVSKDELLQAVWGGRIVSESTITSHINAVRK 74 Query: 78 SLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEE----------GEEIMLSSPPPIPEAV 127 ++ D + + + TV ++G++ + + E G + S PP A+ Sbjct: 75 AIGDTGGEQRL-VRTVARKGFRFVGDIRIADSAEARQPGGPGSAGHTSLGSKEPPPALAL 133 Query: 128 PATDSPSHS-LNIQNTATPPEQ 148 P D PS + L QN + +Q Sbjct: 134 P--DKPSITVLPFQNLSGDADQ 153 >UniRef50_A6ULB6 Transcriptional regulator domain protein n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6ULB6_SINMW Length = 508 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 1/101 (0%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M +P+ G++++ P + R G + + R + LL + G ++S+ ELI+ W Sbjct: 1 MVEPLYTFGDFVLDPRSGLLRRKGESVEIGSRGLALLQALLEARGGIVSKAELIERGWPN 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 +IV + +T I+ LRK+L + D +I T+P+ GY+L+ Sbjct: 61 TIVEDSNLTVQIASLRKALGPS-PDGREWITTIPRAGYRLV 100 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V+R G +V + +R+G L L R DLL F + G +R EL+++VW S Sbjct: 184 VLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEHVWGWSYGD 243 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYK 99 VT I LR+ ++D D +P + TV GY+ Sbjct: 244 PSTVTVHIRRLREKIED-DPTAPRMLVTVWGVGYR 277 >UniRef50_Q1ITK1 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITK1_ACIBL Length = 724 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/200 (22%), Positives = 95/200 (47%), Gaps = 19/200 (9%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 +Q +VR G + ++ + G +L ++ R ++L + GE+++R++L +W Sbjct: 7 RQQLVRFGPYCANRQTGELYKFGTRLKIQDRPFEILSILLESPGELVTREDLRTRLWPDG 66 Query: 62 IVT--NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSS 119 ++ ++ ++ +LR L D+ D+P YI TV RGY+ + V + + L++ Sbjct: 67 TFVDFDNNISTAVHKLRSVLSDS-ADAPRYIETVGGRGYRFIGTV---ESDVPADSELAA 122 Query: 120 PPPIPEAVPATDSPSH---SLNIQNT---ATPPEQSPVKSKRFTTFWVWFFFLLSLGICV 173 P P TDS S S+ ++ T P +S+R W+ + +L + + Sbjct: 123 SVQAPANKPETDSTSARVVSVIVKKPVALTTAPASVETRSRR------WWLLIPAL-VLL 175 Query: 174 ALVAFSSLDTRLPMSKSRIL 193 L+A ++ P ++ R++ Sbjct: 176 GLIAAAAWIYFTPPAEPRVV 195 >UniRef50_C5AMC0 Transcriptional regulator, winged helix family protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5AMC0_BURGB Length = 956 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRK 77 ++ NG + L R +L A G ++++D L+D +W + V + + +S LR+ Sbjct: 24 RELRENGSAVRLGARAFAILEMLAAADGRLVTKDALLDAIWPDTFVEENTLQVHLSALRR 83 Query: 78 SLKDNDEDSPVYIATVPKRGYKLM 101 +L D + I TVP RGY+L+ Sbjct: 84 ALGDQRD----CIMTVPGRGYRLV 103 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT-NHV 67 G+ V + +++ G+++ L P+ DLL+ A + G SR EL+D +W + H Sbjct: 143 GDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSELLDVIWGYNFSGYEHT 202 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V I+ LR + + D +P+YI T GY+ Sbjct: 203 VNSHINRLRAKI-EPDMGNPIYILTTWGIGYRF 234 >UniRef50_C6D5Y8 Putative two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5Y8_PAESJ Length = 255 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query: 20 ISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW-KRSIVTNHVVTQSISELRKS 78 + R G ++ L DLL+ F G VL+R+ + D VW + ++VV I LR+ Sbjct: 169 VFRGGERIELTKTEYDLLLMFLTSDGAVLTREAMFDAVWGSQYFGGSNVVDVHIKTLRRK 228 Query: 79 LKDNDEDSPVYIATVPKRGYKLM 101 LKD+ +P YIATV GY+L+ Sbjct: 229 LKDS-AVAPHYIATVRGVGYRLV 250 >UniRef50_Q1NA75 DNA-binding response regulator n=3 Tax=Alphaproteobacteria RepID=Q1NA75_9SPHN Length = 236 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 3/81 (3%) Query: 22 RNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI-VTNHVVTQSISELRKSLK 80 R GR L L P+ +L + H+GEV++R+ L+ +VWK S +VV ++ LR+ L+ Sbjct: 150 RQGRHLPLSPKEFELFRYLMDHAGEVVTREMLLRHVWKLSFDPQTNVVDVNVGRLRRKLE 209 Query: 81 DNDEDSPVYIATVPKRGYKLM 101 + D+PV + TV GY+L+ Sbjct: 210 EG-FDTPV-LETVWGTGYRLI 228 >UniRef50_D2R142 Two component transcriptional regulator, winged helix family n=2 Tax=Planctomycetaceae RepID=D2R142_9PLAN Length = 237 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 23 NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS--IVTNHVVTQSISELRKSLK 80 +G +L L R +L+ + A H+G +SRDEL+ NVW+ S + + I+ LR+ L+ Sbjct: 150 DGERLDLSERECELVRYLASHAGRAISRDELLVNVWRISPDGLPTRTIDMQIARLREKLR 209 Query: 81 DNDEDSPVYIATVPKRGY 98 D D P + TV +GY Sbjct: 210 D-DPTQPRVLLTVRGKGY 226 >UniRef50_B1KN36 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KN36_SHEWM Length = 294 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G + +Q+ N ++LE R LL A+ +V+SRD L++N+W + IV++ + Sbjct: 6 GHCHLNTKTHQLYVNDGLISLENRQFLLLQLLAKSGNQVVSRDHLLENLWPKQIVSDTSL 65 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEE 111 ++ IS+ RK + D D S I T G+ L+ P+ E+ Sbjct: 66 SRLISDTRKLIGD-DGKSQHIIKTCRGGGFMLVPPITMSDTEQ 107 >UniRef50_Q12IZ6 Transcriptional regulatory protein-like protein n=2 Tax=Shewanella RepID=Q12IZ6_SHEDO Length = 580 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 36 LLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPK 95 LL + + ++S+++L++ VW +V + + Q I LR++L D D +P+YI + Sbjct: 49 LLSVLCEAAPGIVSQEQLLEKVWPDVVVGDETLKQRIKLLRRALND-DAHTPIYIEAIRG 107 Query: 96 RGYKLMVPVIWYSE 109 RGY+L+ VI SE Sbjct: 108 RGYRLLPQVIVTSE 121 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 3/103 (2%) Query: 11 WLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR-SIVTNHVVT 69 ++ P ++ +G ++ +L+ LL +F H VLS+D++ + VW S ++ V Sbjct: 142 FIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLSKDQIYEKVWGVPSYGDSNTVM 201 Query: 70 QSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEG 112 I +LR+ + + D SP YI T+ GYK VP E EG Sbjct: 202 VHIRKLREKI-EKDPSSPEYIVTIRGLGYKF-VPNPARKESEG 242 >UniRef50_B1T3K8 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T3K8_9BURK Length = 571 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G+ +V S +++ G ++ + R DLL+ + G +SRD L NVW ++ + V Sbjct: 14 GQTVVVRSRRELTHAGTRVEIGGRAFDLLIALVEARGVPVSRDTLQANVWAGRVIEGNTV 73 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 IS +R++L D D D+ IAT+ GY+ + + Sbjct: 74 EARISVIRRALGD-DRDA---IATIEGFGYQFVAEI 105 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 ++ G + + + Q+++ G+ + L P DL+ Q+ VLSRD L+D VW + + Sbjct: 131 LKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALLDAVWGVNYFGD 190 Query: 66 H-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYK 99 V +I LR+ ++D D PVYI T+ GYK Sbjct: 191 RKTVDVNIRRLRQKIED-DPSHPVYIETLWGHGYK 224 >UniRef50_Q1AYG8 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AYG8_RUBXD Length = 229 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW-KRSIVT 64 V VG+ + P ++++ GR++ L PR LL A+ G V R L+ VW + + Sbjct: 130 VYVGDLEIDPEQIRVTKGGREVMLSPREFKLLYTLARSPGRVFPRGTLLRQVWGEDEYID 189 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V + LR L D+ D P I TV GY+L+ P Sbjct: 190 ERTVNVYVQRLRNKLGDDPSD-PKLIETVRGFGYRLVRP 227 >UniRef50_C9NM06 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NM06_9VIBR Length = 496 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 21 SRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLK 80 S+ G +++LEPR + LL + G S +E I++VW+ ++ +VVT IS LR + Sbjct: 30 SKQG-EISLEPRNLALLEILLTNVGNPTSIEEFIESVWESQYISKNVVTNRISLLRNLFR 88 Query: 81 DNDE--DSPVYIATVPKRGY 98 ++ E D I T PKRGY Sbjct: 89 EHSEEADPSKIIITYPKRGY 108 >UniRef50_C1XV31 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Meiothermus RepID=C1XV31_9DEIN Length = 256 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 23 NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV-TNHVVTQSISELRKSLKD 81 +GR L R I +L A+ +GEV+SRDE++D VW I ++ V I LRK L + Sbjct: 161 DGRVEPLGEREIGILRLLAERAGEVVSRDEILDRVWGGDIFPSSRTVDNFIVRLRK-LFE 219 Query: 82 NDEDSPVYIATVPKRGYKL 100 D P+Y+ TV GY+ Sbjct: 220 PDPAHPIYLHTVWGVGYRF 238 >UniRef50_C6AYW7 Transcriptional regulator, winged helix family n=6 Tax=Rhizobiales RepID=C6AYW7_RHILS Length = 946 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 16 SINQ--ISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSIS 73 S+ Q ++++G + L R +DLLV ++S+ +LI VW IV + ++ Sbjct: 20 SVGQRLLAKDGVPINLGARALDLLVALTLAPNVIVSKQDLISRVWPDVIVDEGSLRFHMT 79 Query: 74 ELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 LRK+L D D YI T+ RGY + P+ Sbjct: 80 GLRKALGDG-HDGARYITTIAGRGYCFVAPI 109 >UniRef50_B5ET33 Hypothetical transcriptional regulatory protein n=2 Tax=Vibrio fischeri RepID=B5ET33_VIBFM Length = 369 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + + ++R + P NQI +N + L +L +V S+DE+ VW+ Sbjct: 2 LYKNLIRFKDITFNPKTNQIIKNDCTIKLTHSESKILKLLLTSPNKVFSKDEIFAYVWEG 61 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVY-IATVPKRGYKLMVPVIWYSE 109 + VV Q+IS LRK L ND +Y I T+ K+GYK V ++ + Sbjct: 62 TATNIGVVPQAISVLRKKLHSND----IYLIETIKKKGYKADVHNTFFEK 107 >UniRef50_D1BJH9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Actinomycetales RepID=D1BJH9_SANKS Length = 253 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV-TNHV 67 G+ LV + ++ G ++ L PR LL + H E+ +R+ L+ +W +V + Sbjct: 155 GDLLVDRTARRVFLAGAEVVLTPRASLLLDYLMTHPRELHTRERLLQALWGFDLVPSTRA 214 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V ++E+R+ L D D +P Y+ TVP GY+ Sbjct: 215 VDHRVAEIRRVLHD-DAGAPRYVETVPNLGYRF 246 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 3/100 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 QQ + VG+ ++ ++++R+G + L+PR LL + QH+G+V++R L+++VW Sbjct: 160 QQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVWDYH 219 Query: 62 IV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 +V+ +S LR + D + D P+ + TV GY + Sbjct: 220 FDPQTNVIDVHVSRLRAKI-DKNFDKPL-LHTVRGAGYTI 257 >UniRef50_B1JFX2 Two component transcriptional regulator, winged helix family n=30 Tax=Bacteria RepID=B1JFX2_YERPY Length = 235 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS-IVTNHV 67 G+ +V P+ R +L L R +++L + QH G V++RD L D VW + + Sbjct: 135 GDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVITRDMLFDAVWGYDHLPQSRT 194 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYK 99 + Q IS+LRK++ + D PV I TV GY+ Sbjct: 195 LDQHISKLRKTI-ELDPVHPVLIRTVHGAGYR 225 >UniRef50_P0A5Z5 DNA-binding response regulator mtrA n=76 Tax=Bacteria RepID=MTRA_MYCBO Length = 225 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query: 18 NQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RSIVTNHVVTQSISELR 76 ++++RNG Q++L P DLLV A+ +V +RD L++ VW R +V + LR Sbjct: 140 HKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLR 199 Query: 77 KSLKDNDEDSPVYIATVPKRGYK 99 ++ D ++P + TV GYK Sbjct: 200 AKVE-KDPENPTVVLTVRGVGYK 221 >UniRef50_Q0ANH0 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Maricaulis maris MCS10 RepID=Q0ANH0_MARMM Length = 183 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 6/83 (7%) Query: 22 RNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKD 81 R G LEPRL +L A+ ++RDE ++ VW+ ++ + Q+IS LR+ L D Sbjct: 31 RKGETHRLEPRLAGVLHLLARRGISPVTRDEFLETVWEED-GSDEALNQAISRLRRLLGD 89 Query: 82 NDEDSPVYIATVPKRGYKLMVPV 104 I T+P+ GY L PV Sbjct: 90 AS-----LIRTLPRIGYSLSAPV 107 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%) Query: 20 ISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-HVVTQSISELRKS 78 +S NG +TL + DLL + ++SG VL+R +LID VW V + + + LR Sbjct: 146 VSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSK 205 Query: 79 LKDNDEDSPVYIATVPKRGYKL 100 +++ D +PV++ TV GYKL Sbjct: 206 IEE-DPANPVHLVTVRGLGYKL 226 >UniRef50_B1KD58 Putative transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KD58_SHEWM Length = 501 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 7/93 (7%) Query: 13 VTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSI 72 + S +QI N RQ+T+ P+ + L++ + V++++ L+ VW + V+ Q+I Sbjct: 12 ICCSTHQIQFNDRQVTVRPKTLALIIELIKQQDNVVNKESLLAKVWDDVVCDEQVLFQTI 71 Query: 73 SELRKSLKDNDEDSPV-YIATVPKRGYKLMVPV 104 SE+RK P+ I T P++GY + V Sbjct: 72 SEIRKIF------GPIQVIQTYPRKGYAWVATV 98 >UniRef50_A8FS89 Transcriptional regulator domain protein n=5 Tax=Shewanella RepID=A8FS89_SHESH Length = 713 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 6/80 (7%) Query: 26 QLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RSIVTNHVVTQSISELRKSLKD--N 82 +++++P+ I+LL + A+ V++RDELIDN+W+ + V +T +I LRK L + Sbjct: 38 KVSIQPKFIELLSYLARKYPNVVTRDELIDNIWEGNTYVGAKALTNAIWHLRKHLNPLLS 97 Query: 83 DEDSPVYIATVPKRGYKLMV 102 E + I TV K GY+L++ Sbjct: 98 GEQA---IETVRKTGYRLLI 114 >UniRef50_Q1QIX2 Lysine decarboxylase transcriptional regulator, CadC n=2 Tax=Rhizobiales RepID=Q1QIX2_NITHX Length = 574 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 23 NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDN 82 G L L P+ + LL+ FA + G VLS+ EL+D VW V + + Q I E+R +L D Sbjct: 21 GGEALKLRPKTLCLLILFATNPGRVLSKRELMDAVWPNVHVGDDSLFQCIREIRTALGDE 80 >UniRef50_A7BB43 Putative uncharacterized protein n=2 Tax=Actinomycetales RepID=A7BB43_9ACTO Length = 247 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Query: 25 RQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-HVVTQSISELRKSLKDND 83 R+L L P+ + LL + H GE+ +R+ L+ +W ++ V I E+R +L ++ Sbjct: 166 RELELTPKAMGLLDYLMTHPGELHTRERLLSVLWGIDFASSTRAVDHRIREIRAALGEDP 225 Query: 84 EDSPVYIATVPKRGYKLM 101 D PV+I TVP GY+ + Sbjct: 226 SD-PVFIETVPSVGYRFI 242 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 23 NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDN 82 +G +L L R DLLVF +H G SR EL++ VW S + VT + LR+ + + Sbjct: 154 DGGELALTGREFDLLVFLLRHPGRAFSRAELLEQVWGWSFGDHSTVTVHMRRLREKV-EP 212 Query: 83 DEDSPVYIATVPKRGYK 99 D PV I TV GY+ Sbjct: 213 DPARPVRINTVWGVGYR 229 >UniRef50_A0KH62 Transcriptional activator protein n=1 Tax=Aeromonas hydrophila subsp. hydrophila ATCC 7966 RepID=A0KH62_AERHH Length = 97 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 8/74 (10%) Query: 35 DLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDSPV------ 88 D+L++ + G ++S+DE++ NVW IV + V+ ++S +RK L+ DED Sbjct: 13 DVLMYLINNVGRLISKDEILHNVWANRIVCENTVSVALSNIRKFLRKADEDCSCLTNVSG 72 Query: 89 --YIATVPKRGYKL 100 YI K G+KL Sbjct: 73 SGYIFNPAKSGFKL 86 >UniRef50_D2TJ93 Lateral flagellar transmembrane regulator n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJ93_CITRO Length = 325 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 6 VRVGEWLVTPSINQI--SRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 + V W + S+N + G L LL A+++ VLSR L+ VWK IV Sbjct: 12 IVVNNWRMDSSLNALIHCETGETRRLGEYHFILLETLAKNADSVLSRSYLMAEVWKNRIV 71 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP--VIWYSEEEGEEIMLS 118 + + +I LR ++ D+ + + I T+PK+GY I YS E E ++LS Sbjct: 72 GGNSLPTAIHALRVAIDDDGKQQEI-IKTIPKKGYLFNKDYLTIEYSSEAAEHVVLS 127 >UniRef50_A5FVA6 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A5FVA6_ACICJ Length = 244 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 15/106 (14%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW----- 58 PV+RV + + ++R GR++ L+PR ++L + +H+G V++R L+++VW Sbjct: 147 PVLRVEDLELDRLTRAVTRAGRRIDLKPREYEVLEYLMRHAGRVVTRTMLLEDVWNFHFD 206 Query: 59 -KRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + S+V +HV S LR L E + TV GY++ P Sbjct: 207 PRTSVVESHV-----SRLRAKLGAGRE----LLHTVRGAGYRIGDP 243 >UniRef50_C6AVM9 Response regulator receiver protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AVM9_RHILS Length = 277 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 4/96 (4%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 +R G + P Q+ +GR + R DLL+ + +G ++S+DE+++ VW +V Sbjct: 35 IRFGRFCAIPHSRQLLLDGRPHEIGGRAFDLLMVLLRSNGRIVSKDEILNEVWPSMVVEE 94 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + + LR++L I T+ +RGY L+ Sbjct: 95 CNLRFQVKSLRRALGSQGN----MIKTIVRRGYMLI 126 >UniRef50_B0G7M7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0G7M7_9FIRM Length = 231 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 V+ G + + + +NG++++L + LL F ++ + S+ EL VW+ + Sbjct: 136 VKKGSFTLRMESQTVLKNGKEISLTSKEFSLLYLFIENPEYIFSKQELFSKVWRSDNCDD 195 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + I +LR L+D D P +I TV +GYK + Sbjct: 196 STILVYIKKLRDKLED-DPSHPTHICTVWGKGYKFCI 231 >UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=16 Tax=Firmicutes RepID=B7GFY6_ANOFW Length = 226 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 4/101 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 +Q+ +VR G + V + + + ++G Q+ L PR LL Q+ G VL+RD ++D +W Sbjct: 127 IQEEIVRWGAFEVNRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDIILDRIWGY 186 Query: 61 SI-VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V+ + ++ LRK + D + I TV GY + Sbjct: 187 DADVSMKTIDATVKLLRKKIGDEQQQ---LIKTVRGVGYTI 224 >UniRef50_B2U992 Two component transcriptional regulator, winged helix family n=7 Tax=Burkholderiaceae RepID=B2U992_RALPJ Length = 237 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 7/109 (6%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 +RVG + V P ++ NG Q+ L PR DL ++ ++ G+++ R+ + VW RSI + Sbjct: 133 IRVGPYAVDPVGRVLTLNGSQVELSPREFDLGLYLFRNVGKLVPRELIEQAVWGRSIGPD 192 Query: 66 -HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGE 113 + IS+LR L D ++ + V + +V GY+L ++E+GE Sbjct: 193 SRTLATHISKLRLKL-DLNQKNGVRLVSVYSHGYRLET-----TQEDGE 235 >UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n=3 Tax=Burkholderia cenocepacia RepID=B1KAJ7_BURCC Length = 493 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 4/93 (4%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G V S + R+G+ + + R D+L +G ++++DEL+ VW ++V + Sbjct: 3 LGTLEVDLSTRSLRRDGKAIHVGSRAFDVLAVLLSAAGRLVTKDELMAAVWPGTVVEENN 62 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + IS LRK L + I TVP RGY+L Sbjct: 63 LQVHISALRKLLGPQRD----LIVTVPGRGYQL 91 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + ++ G + + +++ +G+ + L P+ +LL F +H V S D+L+D +W + Sbjct: 129 ETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDKLWD-GV 187 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 H V +S LR+ ++ N D P YI V GY+ Sbjct: 188 GDKHTVRVHLSRLREKIEANPND-PQYIVNVWGIGYRF 224 >UniRef50_Q3Z7F8 Transcriptional regulator n=5 Tax=Dehalococcoides RepID=Q3Z7F8_DEHE1 Length = 223 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 5/102 (4%) Query: 1 MQQP-VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK 59 M +P ++R G+ ++ +++ +GR L L R +LL F AQ+ G V SR+ L++ VW Sbjct: 121 MSEPGIIRAGDLIIDTLGCEVTLSGRLLDLTFREFELLKFLAQNRGRVFSREALLNKVWG 180 Query: 60 RSIV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + V I+ LR ++D + ++ TV GY+ Sbjct: 181 YDYYGGDRTVDVHITRLRGKIEDQ---THTFVETVRNIGYRF 219 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enteroba... 636 0.0 UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobac... 510 e-143 UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliiv... 441 e-122 UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax... 441 e-122 UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 T... 437 e-121 UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobact... 399 e-109 UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas... 399 e-109 UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanell... 387 e-106 UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vi... 358 3e-97 UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobact... 329 2e-88 UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vi... 234 7e-60 UniRef50_A3WEA4 Adenylate cyclase n=1 Tax=Erythrobacter sp. NAP1... 193 1e-47 UniRef50_B2T985 Transcriptional regulator, winged helix family n... 179 2e-43 UniRef50_B5WFU1 Transcriptional regulator, winged helix family n... 176 2e-42 UniRef50_A3UTR1 Transcriptional regulator CadC n=1 Tax=Vibrio sp... 169 2e-40 UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vi... 168 6e-40 UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax... 163 1e-38 UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein ... 152 3e-35 UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=... 152 4e-35 UniRef50_Q6GZK0 Cad operon transcriptional activator (Fragment) ... 147 1e-33 UniRef50_Q89GS8 Transcriptional regulator n=1 Tax=Bradyrhizobium... 146 3e-33 UniRef50_Q1ITK1 Lysine decarboxylase transcriptional regulator, ... 143 1e-32 UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax... 142 3e-32 UniRef50_Q2NVH3 Putative uncharacterized protein n=1 Tax=Sodalis... 142 4e-32 UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=... 141 6e-32 UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium ... 138 6e-31 UniRef50_Q89XL4 Transcriptional regulator n=1 Tax=Bradyrhizobium... 138 6e-31 UniRef50_A4CDR3 Putative transcriptional regulator n=2 Tax=Pseud... 137 6e-31 UniRef50_B2JV11 Transcriptional regulator, winged helix family n... 137 1e-30 UniRef50_B2JV05 Transcriptional regulator, winged helix family n... 136 1e-30 UniRef50_B1YN09 Transcriptional regulator, winged helix family n... 136 2e-30 UniRef50_B1M5U0 Transcriptional regulator domain protein n=3 Tax... 135 5e-30 UniRef50_A5UT44 Two component transcriptional regulator, winged ... 134 8e-30 UniRef50_Q1IKQ5 Lysine decarboxylase transcriptional regulator, ... 134 1e-29 UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingom... 133 2e-29 UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax... 133 2e-29 UniRef50_C3KKU6 Putative transcriptional regulator n=1 Tax=Rhizo... 133 2e-29 UniRef50_A4YSP3 Putative uncharacterized protein n=1 Tax=Bradyrh... 133 2e-29 UniRef50_A5P8P2 Transcription activator ToxR n=1 Tax=Erythrobact... 132 2e-29 UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanel... 132 2e-29 UniRef50_B8ESY3 Transcriptional regulator, winged helix family n... 132 4e-29 UniRef50_B0RLM8 Transcriptional regulator n=6 Tax=Xanthomonas Re... 131 6e-29 UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Ta... 131 6e-29 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 131 6e-29 UniRef50_D1C683 Two component transcriptional regulator, winged ... 131 7e-29 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 131 7e-29 UniRef50_Q087B1 Lysine decarboxylase transcriptional regulator, ... 131 8e-29 UniRef50_C1F5C9 Putative transcriptional regulatory protein n=1 ... 130 1e-28 UniRef50_B0SVQ0 Transcriptional regulator, winged helix family n... 130 1e-28 UniRef50_B2TAW9 Transcriptional regulator, winged helix family n... 129 2e-28 UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiell... 129 2e-28 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 129 2e-28 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 129 3e-28 UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n... 129 3e-28 UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseud... 129 4e-28 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 128 4e-28 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 128 4e-28 UniRef50_A3D2S0 Transcriptional regulator, CadC n=3 Tax=Shewanel... 128 5e-28 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 128 5e-28 UniRef50_Q1AYG8 Two component transcriptional regulator, winged ... 127 8e-28 UniRef50_B1Y588 Transcriptional regulator domain protein n=1 Tax... 127 9e-28 UniRef50_B9BNS9 Transcriptional regulator n=2 Tax=Burkholderia m... 126 1e-27 UniRef50_Q1IIR6 Transcriptional regulatory protein-like n=1 Tax=... 126 2e-27 UniRef50_D1TLZ3 Transcriptional regulator n=3 Tax=Burkholderia R... 126 2e-27 UniRef50_A4AL32 Putative two-component system response regulator... 126 2e-27 UniRef50_Q89ML1 Blr4182 protein n=1 Tax=Bradyrhizobium japonicum... 126 2e-27 UniRef50_B2G959 Two-component response regulator n=13 Tax=Lactob... 126 2e-27 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 126 2e-27 UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwe... 126 2e-27 UniRef50_Q39G50 Transcriptional regulator, winged helix family n... 126 2e-27 UniRef50_Q0HTC3 Lysine decarboxylase transcriptional regulator, ... 126 3e-27 UniRef50_Q98JB4 Adenylate cyclase n=1 Tax=Mesorhizobium loti Rep... 125 3e-27 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 125 3e-27 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 125 4e-27 UniRef50_C9LLD5 DNA-binding response regulator ResD n=1 Tax=Dial... 125 4e-27 UniRef50_A5L7Z6 Putative uncharacterized protein n=1 Tax=Vibrion... 125 4e-27 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 125 5e-27 UniRef50_Q1MK13 Putative transcriptional regulator n=1 Tax=Rhizo... 125 5e-27 UniRef50_A5CFS8 Transcriptional regulator n=1 Tax=uncultured mar... 124 6e-27 UniRef50_Q2Y9M2 Transcriptional regulator, putative ATPase, wing... 124 7e-27 UniRef50_Q12S47 Transcriptional regulatory protein-like protein ... 124 7e-27 UniRef50_A3SM14 Adenylate/guanylate cyclase/hydrolase, alpha/bet... 124 7e-27 UniRef50_Q12QP4 Transcriptional regulatory protein-like protein ... 124 8e-27 UniRef50_B2SNG2 Transcriptional regulatory protein, C terminal n... 124 1e-26 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 124 1e-26 UniRef50_D0WLW8 DNA-binding response regulator RegX3 n=1 Tax=Act... 124 1e-26 UniRef50_D1TLX7 Transcriptional regulator, winged helix family n... 124 1e-26 UniRef50_Q89GU0 Blr6255 protein n=1 Tax=Bradyrhizobium japonicum... 124 1e-26 UniRef50_Q5SMC3 Response regulator n=4 Tax=Deinococci RepID=Q5SM... 123 1e-26 UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, ... 123 2e-26 UniRef50_C6JFQ6 Putative uncharacterized protein n=1 Tax=Ruminoc... 123 2e-26 UniRef50_A1TAL1 Transcriptional regulator, CadC n=7 Tax=Mycobact... 123 2e-26 UniRef50_Q988M4 Mll6677 protein n=1 Tax=Mesorhizobium loti RepID... 122 2e-26 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 122 2e-26 UniRef50_Q1IHU2 Lysine decarboxylase transcriptional regulator, ... 122 3e-26 UniRef50_A4C973 Putative transcriptional regulator n=1 Tax=Pseud... 122 3e-26 UniRef50_B9XFI9 Two component transcriptional regulator, winged ... 122 3e-26 UniRef50_B8G223 Two component transcriptional regulator, winged ... 122 4e-26 UniRef50_C1F3P9 Transcriptional regulator, putative n=1 Tax=Acid... 122 4e-26 UniRef50_A4X1M5 Two component transcriptional regulator, winged ... 122 4e-26 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 122 4e-26 UniRef50_C5D1G0 Transcriptional regulator, winged helix family n... 121 5e-26 UniRef50_Q3Z7F8 Transcriptional regulator n=5 Tax=Dehalococcoide... 121 5e-26 UniRef50_B7RJ24 Putative regulatory protein, possibly two-compon... 121 5e-26 UniRef50_B4RU42 Transcriptional regulator n=2 Tax=Alteromonas ma... 121 6e-26 UniRef50_UPI0001B518F4 two-component system response regulator n... 121 6e-26 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 121 7e-26 UniRef50_Q2SHD7 Probable transcriptional regulator n=1 Tax=Hahel... 121 8e-26 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 121 8e-26 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 121 9e-26 UniRef50_B1J1E8 Two component transcriptional regulator, LuxR fa... 121 1e-25 UniRef50_B0UQ98 Transcriptional regulator domain protein n=4 Tax... 120 1e-25 UniRef50_A4JSN6 Transcriptional regulator, winged helix family n... 120 1e-25 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 120 1e-25 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 120 1e-25 UniRef50_C6XRJ0 Transcriptional regulator, CadC n=1 Tax=Hirschia... 120 2e-25 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 119 2e-25 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 119 2e-25 UniRef50_Q3KE15 Putative transcriptional regulator n=3 Tax=Prote... 119 2e-25 UniRef50_C7E4R8 Transcriptional regulator n=1 Tax=Pantoea stewar... 119 2e-25 UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC... 119 2e-25 UniRef50_A5ED47 Transcriptional regulator n=1 Tax=Bradyrhizobium... 119 2e-25 UniRef50_A2SGK5 ATPase-like protein n=1 Tax=Methylibium petrolei... 119 2e-25 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 119 2e-25 UniRef50_UPI00019732E7 DNA-binding response regulator n=1 Tax=Cl... 119 2e-25 UniRef50_Q3KEV6 Putative transcriptional regulator n=1 Tax=Pseud... 119 2e-25 UniRef50_Q12RS3 Transcriptional regulatory protein-like protein ... 119 2e-25 UniRef50_UPI0001C164FC Two component Transcriptional regulator, ... 119 3e-25 UniRef50_UPI0001AEBD7C two component transcriptional regulator n... 119 3e-25 UniRef50_B1KFP5 Transcriptional regulator, CadC n=1 Tax=Shewanel... 119 3e-25 UniRef50_UPI0001AF360D LuxR family transcriptional regulator n=3... 119 3e-25 UniRef50_B1KPW9 Transcriptional regulator, CadC n=1 Tax=Shewanel... 119 3e-25 UniRef50_C6IXU0 Transcriptional regulator domain-containing prot... 119 3e-25 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 119 3e-25 UniRef50_B1KA17 Transcriptional regulator, winged helix family n... 119 4e-25 UniRef50_C5AMC0 Transcriptional regulator, winged helix family p... 118 5e-25 UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteob... 118 5e-25 UniRef50_C7RJ06 Transcriptional regulator, putative ATPase, wing... 118 6e-25 UniRef50_A8MLN3 Two component transcriptional regulator, winged ... 118 6e-25 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 118 6e-25 UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepI... 118 6e-25 UniRef50_C2E0K8 Response regulator PhoP n=9 Tax=Lactobacillus Re... 117 7e-25 UniRef50_Q1M6Q3 Putative adenylate cyclase/transcriptional regul... 117 7e-25 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 117 7e-25 UniRef50_Q0AQA4 Lysine decarboxylase transcriptional regulator, ... 117 7e-25 UniRef50_A5IKU4 Two component transcriptional regulator, winged ... 117 8e-25 UniRef50_C4IFN3 Transcriptional regulator n=15 Tax=Bacteria RepI... 117 1e-24 UniRef50_C5AMA9 Transcriptional regulator, winged helix family p... 117 1e-24 UniRef50_C5SN08 Transcriptional regulator, CadC n=1 Tax=Asticcac... 117 1e-24 UniRef50_A3PUD7 Two component transcriptional regulator, winged ... 117 1e-24 UniRef50_B5ZPU5 Transcriptional regulator domain protein n=11 Ta... 117 1e-24 UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mol... 117 1e-24 UniRef50_A2W5F3 Putative uncharacterized protein n=1 Tax=Burkhol... 117 1e-24 UniRef50_B1ZTA9 Transcriptional regulator, CadC n=1 Tax=Opitutus... 116 2e-24 UniRef50_D0MIF5 Two component transcriptional regulator, winged ... 116 2e-24 UniRef50_A3UJQ2 Transcriptional regulator n=1 Tax=Oceanicaulis a... 116 2e-24 UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum... 116 2e-24 UniRef50_UPI00017F4CF5 two-component response regulator n=2 Tax=... 116 2e-24 UniRef50_A4CDV0 Putative transcriptional regulator n=1 Tax=Pseud... 116 2e-24 UniRef50_Q48IP6 Transcriptional regulator, LuxR family n=1 Tax=P... 116 2e-24 UniRef50_D1TNN3 Transcriptional regulator, winged helix family n... 116 2e-24 UniRef50_C6AYW7 Transcriptional regulator, winged helix family n... 116 3e-24 UniRef50_C7NFF7 Response regulator with CheY-like receiver domai... 116 3e-24 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 116 3e-24 UniRef50_Q0BZ36 TPR domain protein n=1 Tax=Hyphomonas neptunium ... 115 3e-24 UniRef50_C2EBW1 Two-component response regulator n=1 Tax=Lactoba... 115 3e-24 UniRef50_P15795 Cholera toxin transcriptional activator n=121 Ta... 115 4e-24 UniRef50_Q1QIX2 Lysine decarboxylase transcriptional regulator, ... 115 5e-24 UniRef50_UPI0001787E68 two component transcriptional regulator, ... 114 6e-24 UniRef50_C6LGA3 Transcriptional regulatory protein CutR n=1 Tax=... 114 6e-24 UniRef50_A0Y3K5 DNA-binding transcriptional activator n=1 Tax=Al... 114 6e-24 UniRef50_A3VIF4 Adenylate/guanylate cyclase/hydrolase, alpha/bet... 114 7e-24 UniRef50_C4L703 Two component transcriptional regulator, winged ... 114 8e-24 UniRef50_B8ESP8 Transcriptional regulator domain protein n=4 Tax... 114 8e-24 UniRef50_B1HYB3 DNA-binding response regulator n=2 Tax=Bacillace... 114 8e-24 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 114 8e-24 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 114 8e-24 Sequences not found previously or not previously below threshold: UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 130 1e-28 UniRef50_B2TAV2 Transcriptional regulator, winged helix family n... 126 2e-27 UniRef50_D1C280 Two component transcriptional regulator, winged ... 125 3e-27 UniRef50_Q05943 Transcriptional regulatory protein glnR n=102 Ta... 125 4e-27 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 124 9e-27 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 124 1e-26 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 123 1e-26 UniRef50_B9L1T3 Phosphate regulatory protein n=1 Tax=Thermomicro... 122 2e-26 UniRef50_B6A1A4 Transcriptional regulator, winged helix family n... 121 6e-26 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 121 7e-26 UniRef50_B5HID4 Two-component system response regulator n=3 Tax=... 121 9e-26 UniRef50_D1CH01 Two component transcriptional regulator, winged ... 120 1e-25 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 120 1e-25 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 120 1e-25 UniRef50_C9Y6H6 Putative uncharacterized protein n=1 Tax=Curviba... 120 2e-25 UniRef50_A6U8S7 Transcriptional regulator, winged helix family n... 119 2e-25 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 119 2e-25 UniRef50_B7GTW3 Response regulator receiver protein n=6 Tax=Bifi... 119 3e-25 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 119 3e-25 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 119 4e-25 UniRef50_A9AVR8 Two component transcriptional regulator, winged ... 119 4e-25 UniRef50_D1CC84 Two component transcriptional regulator, winged ... 118 4e-25 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 118 4e-25 UniRef50_A7HMZ4 Two component transcriptional regulator, winged ... 118 4e-25 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 118 5e-25 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 117 7e-25 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 117 8e-25 UniRef50_D1XII5 Two component transcriptional regulator, winged ... 117 8e-25 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 117 9e-25 UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 T... 117 9e-25 UniRef50_B8JG07 Transcriptional regulator, CadC n=3 Tax=Anaeromy... 117 9e-25 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 117 1e-24 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 117 1e-24 UniRef50_A1TS46 Transcriptional regulator domain protein n=2 Tax... 116 1e-24 UniRef50_Q0RFU4 Two-component system response regulator n=18 Tax... 116 2e-24 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 116 2e-24 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 116 2e-24 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 116 2e-24 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 116 2e-24 UniRef50_C8W6G9 Putative two component transcriptional regulator... 116 2e-24 UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 116 2e-24 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 116 2e-24 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 116 2e-24 UniRef50_C7N5H9 Response regulator with CheY-like receiver domai... 116 2e-24 UniRef50_A9KM61 Two component transcriptional regulator, winged ... 116 2e-24 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 116 2e-24 UniRef50_B2J8Q5 Two component transcriptional regulator, winged ... 116 2e-24 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 116 3e-24 UniRef50_D2Q6K7 Response regulator-like transcriptional regulato... 116 3e-24 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 116 3e-24 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 115 3e-24 UniRef50_D1A718 Putative two component transcriptional regulator... 115 3e-24 UniRef50_B5EQN9 Two component transcriptional regulator, winged ... 115 4e-24 UniRef50_A6LVN5 Two component transcriptional regulator, winged ... 115 4e-24 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 115 4e-24 UniRef50_D1CGU9 Two component transcriptional regulator, winged ... 115 5e-24 UniRef50_D1BL25 Two component transcriptional regulator, winged ... 115 5e-24 UniRef50_C4L1R5 Two component transcriptional regulator, winged ... 115 5e-24 UniRef50_D1VJ14 Two component transcriptional regulator, winged ... 115 5e-24 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 115 5e-24 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 115 5e-24 UniRef50_B0N9X7 Putative uncharacterized protein n=2 Tax=Clostri... 114 6e-24 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 114 6e-24 UniRef50_Q067N9 Two component transcriptional regulator, winged ... 114 6e-24 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 114 6e-24 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 114 6e-24 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 114 6e-24 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 114 7e-24 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 114 7e-24 UniRef50_Q9F5J0 Sim1 n=2 Tax=Streptomyces antibioticus RepID=Q9F... 114 7e-24 UniRef50_B1T3M3 Transcriptional regulator, winged helix family n... 114 8e-24 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 114 8e-24 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 114 8e-24 >UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enterobacteriaceae RepID=CADC_ECOLI Length = 512 Score = 636 bits (1640), Expect = 0.0, Method: Composition-based stats. Identities = 512/512 (100%), Positives = 512/512 (100%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR Sbjct: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP Sbjct: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS Sbjct: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH Sbjct: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL 300 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL Sbjct: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL 300 Query: 301 AIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASE 360 AIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASE Sbjct: 301 AIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASE 360 Query: 361 LLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY 420 LLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY Sbjct: 361 LLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY 420 Query: 421 QIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 480 QIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR Sbjct: 421 QIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 480 Query: 481 PGANTLYWIENGIFQTSVPYVVPYLDKFLASE 512 PGANTLYWIENGIFQTSVPYVVPYLDKFLASE Sbjct: 481 PGANTLYWIENGIFQTSVPYVVPYLDKFLASE 512 >UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobacteriaceae RepID=C5B7S6_EDWI9 Length = 548 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 265/542 (48%), Positives = 342/542 (63%), Gaps = 39/542 (7%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 MQ+ RVGEWLV + N+I+R GR L LEPRLID+L +FA H VLSRDELIDNVWKR Sbjct: 1 MQEQTFRVGEWLVLAADNKITREGRVLVLEPRLIDMLSYFAHHPDMVLSRDELIDNVWKR 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 +IVTNHVVTQ ISELRK LKD ++P YI TVPKRGYKL+ VIW EE E+++ + Sbjct: 61 NIVTNHVVTQCISELRKYLKDGRPEAPEYIVTVPKRGYKLVESVIWCGEESLEQLVAAVL 120 Query: 121 PPIPEAVPATD---------SPSHSLNIQNTATPP------------------------- 146 P + PA SP+ + PP Sbjct: 121 PAETPSFPAAAEAVTPSGSASPAFAAESGAVTPPPASTPLLMAQPASSCDTPVMPPTSAL 180 Query: 147 --EQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMV 204 + +P + ++ WVW F ++L +C A V + R P+ +LLNPRDIDI + Sbjct: 181 TADAAPTPRRLRSSSWVWVAFWVTLALCAAFVGLAVFSHRGPVVSHPMLLNPRDIDIRIQ 240 Query: 205 NK-SCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVN 263 C++W++ QLSY IG+ + +A LNT+STF+VHD+ NYN SSSGK+L I FVN Sbjct: 241 GGNRCSNWTN--QLSYVIGLSEDLAQGLNTYSTFLVHDQTNYNYGGKSSSGKSLYIEFVN 298 Query: 264 QRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQ 323 QR YRAQQCF+S++LVDNAD ML+KRY IT N L++Q D + S+ L P + Sbjct: 299 QRHYRAQQCFLSVRLVDNADNLVMLEKRYFITPDNLLSVQKDFINSIFTVLKVSMPPSLD 358 Query: 324 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 383 + + ++P +L +Y AH LL GD +SLN+AS+LL +I+Q P+F YA+AEKALVD Sbjct: 359 KRYETLMPTHSQVLQQYYHAHQLLLQGDSESLNQASQLLTQIIQQDPDFVYAKAEKALVD 418 Query: 384 IVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 443 I+ +S PL QL AL EI+++ P L II QI V L +GK ++ AIN G Sbjct: 419 ILLNSYQPLSAPQLTALRQEINDVEHNPLLQGTPIIQQIYTVDYLGQGKVAQACSAINKG 478 Query: 444 IDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVP 503 IDLEMSWLNYVLLGKVYE+KG N +AADAY+TAFNLRPG NTL WI+NG+FQT++ V P Sbjct: 479 IDLEMSWLNYVLLGKVYELKGQNNQAADAYITAFNLRPGHNTLDWIKNGVFQTNIERVAP 538 Query: 504 YL 505 YL Sbjct: 539 YL 540 >UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EKJ8_ALISL Length = 542 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 136/543 (25%), Positives = 233/543 (42%), Gaps = 51/543 (9%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M ++ +W + N++ R R++++EPRL++LL F AQHSGEV RDELI +VW Sbjct: 1 MVGLCFQINDWTLVIEENKLYRQDREVSVEPRLVNLLRFLAQHSGEVFCRDELIQHVWDG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGE------- 113 + VT+ VVTQSI ELRK L+D D+ Y+ TVPKRGYKL+ + EE E Sbjct: 61 AFVTDQVVTQSIFELRKILRDGRLDNARYLVTVPKRGYKLVADTQLVNFEETEFWKPCDY 120 Query: 114 ------------EIMLSSPPPIPEAVPATDS----PSHSLNIQNTATPPEQSPVKSKR-- 155 E ++ + E V T+ PS L T + K+K+ Sbjct: 121 SKTVISSALNYAESGHAAHELVDEKVTTTEHDLSFPSGPLTRAITTISKDVEKEKNKQGA 180 Query: 156 -FTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSP 214 F +F W + L+A + T + + I + IDI+++ + ++ + Sbjct: 181 SFNSFHRWKLLAFDAFLVCILIAV-IMSTTYQHTSTHI---TKAIDIDLIEFTFHASRNQ 236 Query: 215 YQLS--YAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQ-Q 271 + A G+ + L + + V +D+ + + L V+ R Q + Sbjct: 237 KDETEFLADGISQKLMADLASVGNYRVQ------LDKTAFTTGILPGKAVDVRVEEQQNK 290 Query: 272 CFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILP 331 ++ ++ N + ++Y +T N + L AL + + L LP Sbjct: 291 TYLDVEYRSNTSNKVLFSRQYRMTPSNLERVLRQSSFDLMNALGVTVSEAQMDELMIGLP 350 Query: 332 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP 391 LL QA+ Y+ D + + LL +I P+ Y AE + + +P Sbjct: 351 KEEGLLEVLIQANHYINQPDPRLFEQGIRLLEKISSEEPDNGYILAELYIAYNAFSALNP 410 Query: 392 LDEKQLAALNTEIDNI---------VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINT 442 E +L+ +IDN+ V E+ + IY+ A++A+ + + + + + Sbjct: 411 --ELELSDNTMKIDNLSQDLVGKYGVATDEIW-PARIYEALAMNAIKQDDKEAAQKYLTH 467 Query: 443 GIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVV 502 S +Y+L GK+ E+ G +A DAY AF + T EN F + + V Sbjct: 468 AFARRESAFSYILEGKLAELNGNLDKAGDAYSRAFFMDTSLETYMLSENLAFYSDLETVA 527 Query: 503 PYL 505 ++ Sbjct: 528 YFM 530 >UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax=Vibrio RepID=C3NSU2_VIBCJ Length = 519 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 127/514 (24%), Positives = 234/514 (45%), Gaps = 24/514 (4%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++ +W++ N++ R R+++ EPRLI+LL F A+H+GEV R+ELI +VW +IVT Sbjct: 5 CFQINDWVLCIDENKLYRQDREVSAEPRLINLLHFLAEHAGEVFGREELIQHVWDGAIVT 64 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYS-------EEEGEEIML 117 + VVTQSI ELRK L+D E++ Y+ TVPKRGYKL+ V +EE + Sbjct: 65 DQVVTQSIFELRKLLRDGREENLSYVVTVPKRGYKLVANVQRLDGNPYVSRQEESTASDV 124 Query: 118 SSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVA 177 I + A A Q P KS + L ++ I + +VA Sbjct: 125 CLADDIDDVEDAVPEIVFPAGPLTRAVCQSQQPKKSSKPNVSRWRLNLLNAIWIGLVIVA 184 Query: 178 FSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSY--AIGVGDLVATSLNTFS 235 + + + +D +++ L++ A G+ + L S Sbjct: 185 MGFFTVQQSQVRI-----TQVVDTHLIEFKFQDGFHAQALTHELADGIAQKLMADLTQVS 239 Query: 236 TFMV-HDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVI 294 + V K Y+ GK++ + +Q + F+ ++L +N+ + + ++Y + Sbjct: 240 DYRVILGKTAYS--SGILPGKSIMVRVNDQDGHE----FLDLELKNNSSDAVLFSRQYPL 293 Query: 295 TNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKS 354 + + ++ + +AL P ++ + L P + A L + +A+ YL D Sbjct: 294 DSQHLASVLKSAEWDVMQALKIPNAEQQAQRLLVDFPRQPAALGLYVRANHYLNVADRPQ 353 Query: 355 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP---LDEKQLAALNTEIDNIVTLP 411 + LL ++++ P+ Y +AE + V+ + P L++ ++ L+ ++ + P Sbjct: 354 FQKGIYLLEQVLKLEPDNHYVQAELLIAYHVQQAISPDQALNQDRMLVLSEQLQQVSYSP 413 Query: 412 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAAD 471 + IY+ A+ A V+ + + + + L S L+YVL GK E+KG A+D Sbjct: 414 QAVVQPRIYEALALQATVENQVETATHYLAQAQGLRESVLSYVLQGKHAELKGDLDGASD 473 Query: 472 AYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYL 505 AY AF + T EN +F +++ + + Sbjct: 474 AYSEAFYMDTSLETYLLCENLVFHSNLKSIDYAM 507 >UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 Tax=Vibrionaceae RepID=Q5E341_VIBF1 Length = 541 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 127/541 (23%), Positives = 230/541 (42%), Gaps = 49/541 (9%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M ++ +W + N++ R R++++EPRLI+LL F AQHSGEV RDELI +VW Sbjct: 1 MVGICFQINDWTLVIEENKLYRQDREVSVEPRLINLLRFLAQHSGEVFCRDELIKHVWDG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 + VT+ VVTQSI ELRK L+D D+ Y+ TVPKRGYKL+ E+ Sbjct: 61 AFVTDQVVTQSIFELRKVLRDGRLDNTRYLVTVPKRGYKLVAETKQIRLEDTPYWKPCDT 120 Query: 121 PPIPEA--------------------------VPATDSPSHSLNIQNTATPPEQSPVKSK 154 EA PA NI N + ++ +S Sbjct: 121 FTSTEADENQNHNVELNTEEQEKEQDETAQLSFPAGPLTRAVTNISNQVSNEKKKQGESF 180 Query: 155 RFTTFWVWFFF-LLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSS 213 F W F +G+ +A++ + + I + +D +++ + ++ + Sbjct: 181 SFLHRWKLLAFDFFLVGVLIAVI----FSVTYQQTTTHI---TKAVDTDLIEFTYHASRN 233 Query: 214 PYQLS--YAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQ- 270 + A G+ + L + + V +++ + + L VN R Q Sbjct: 234 SNNETEYLADGISQKLMADLASVGHYRVQ------LNKTAFTTGILPGKAVNVRVEEQQN 287 Query: 271 QCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKIL 330 + ++ ++ N + ++Y++TN N + + L +AL ++ L L Sbjct: 288 KTYLDVEYRSNISNRVLFSRQYLMTNANLEHVLRQSSQDLMRALGVQASEQDMNRLMLGL 347 Query: 331 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH 390 P LL +A+ ++ D K+ + +LL I + P Y +E + + + Sbjct: 348 PKEHGLLEMLVRANHFINQTDQKNFEKGIDLLENIALAEPNNDYVLSELYIAYNAYSALN 407 Query: 391 P---LDEK--QLAALNTEIDNIVTLPELNNLS-IIYQIKAVSALVKGKTDESYQAINTGI 444 P LDE ++ L+ ++ L ++ L IY+ A+ A+ + +++ +N Sbjct: 408 PELELDENTAKIEKLSQDLQARYALSDVGVLPSRIYEALAMIAIKQDNKEDARAYLNLAF 467 Query: 445 DLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPY 504 S +Y+L GK+ E+ G +A ++Y AF + T EN F + + V + Sbjct: 468 KNRESAFSYILEGKLAELDGDLDQAGESYSKAFFMDTSLETYMLAENLAFYSDLETVAYF 527 Query: 505 L 505 + Sbjct: 528 M 528 >UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobacterium profundum 3TCK RepID=Q1YZ13_PHOPR Length = 509 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 115/514 (22%), Positives = 212/514 (41%), Gaps = 26/514 (5%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + ++ W+ PS N+ + R + ++ RL +LL+F QH + SRDELI+ VW Sbjct: 1 MDKKRYKIDNWIFIPSENKCILDERSVVIDNRLSNLLLFLCQHPHQTFSRDELINEVWNG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEE---------- 110 S +T+ V+TQSI ELRK LK N YI T+PKRGYKL V + Sbjct: 61 SFLTDQVITQSIFELRKILKSNQRHPHGYIITIPKRGYKLDAEVEIQDDSLSTEDNNQDT 120 Query: 111 EGEEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLG 170 E +L++ EAV PS + + Q Q + F LL Sbjct: 121 ENAHALLNTAHTNKEAVREVPQPSSAPSYQKEREAAHQRRSSRGKLIAFCC---LLLVAT 177 Query: 171 ICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATS 230 + + ++R ++ L P I++++ K ++ + P IG + + Sbjct: 178 LASLFYYVKTPESRATSTRKFSSLEPSVINVSI--KIDSNTTDPKTTRIEIGAINSLLND 235 Query: 231 LNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDK 290 L F ++ N +GK+L+ + + + ++ ++ +N LD+ Sbjct: 236 LQYNKNF----RLVRNTTPSPVAGKSLTFHLLEENGKK----YIDVEYYNNISNFMHLDR 287 Query: 291 RYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHG 350 +Y+I + L +L +L AL+ PQ+ ++ +P L QA + + Sbjct: 288 KYLINENDLLLTIKQMLTNLLHALHINVPQQTIDSALSEMPTNPQALELTMQAIGIVFNN 347 Query: 351 DDKSLNRASELLGEIVQSSPEFTYARAEKALV--DIVRHSQHPLDEKQLAALNTEIDNIV 408 +D +A L + + P+ Y A + ++ S +D + ALN + Sbjct: 348 NDADKLKALTLYQQALDIEPDNHYLIAMNYIYKMTLLYISNTGIDNDKKEALNNTLMAQK 407 Query: 409 TLPELNNLS-IIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNR 467 ++ + S +++ A+ AL T E+ Q + + + + +L K+ E G Sbjct: 408 SMLLSDPQSNKVHEAFALLALTTNNTAEAQQHLEKIHYNQQTVMTLLLNAKLAETFGNTA 467 Query: 468 EAADAYLTAFNLRPGANTLYWIENGIFQTSVPYV 501 A++ Y A + E +F + + + Sbjct: 468 SASEYYYQALHKSGSVRVFEVAETLVFYSDLSDI 501 >UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas RepID=A4SQG5_AERS4 Length = 511 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 123/519 (23%), Positives = 213/519 (41%), Gaps = 34/519 (6%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + V + +W + N + R R++ LEPRL++LL F A H+G V RD LI VW Sbjct: 1 MSESVFEIHDWTLRVDDNMLCRPDREVYLEPRLVNLLRFLACHTGTVFGRDALIKEVWDG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 + VT+ VVTQSI ELRK LKD D+ YI TVPKRGYKL+ V + ++++ Sbjct: 61 AEVTDQVVTQSIFELRKILKDGRFDATDYIVTVPKRGYKLVASVRPL---QVVSLLMADE 117 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFT---------TFWVWFFFLLSLGI 171 P+P P S + P +P + T W + + Sbjct: 118 QPVPAVNPTLSDLSPPATADDDDALPNAAPFPAGPLTRAISAHAKDARSRWKMVSFDIFV 177 Query: 172 CVALVAF-SSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATS 230 V LVA S L + + +L+P + + ++ + + + D + + Sbjct: 178 AVILVAIVSMLSYQHASPQVHTMLDPNLLVFRFHSGMDDNNEN-------VRLADGITRA 230 Query: 231 LNTFSTFMVHDKINY---NIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTM 287 L + ++ Y N+ GK LS+ RQ R ++ ++ + + Sbjct: 231 LMGEVAAVTPLRVQYGATNLMGGILPGKELSVRV--SRQPRG--TYLDLEYRNINTNRVL 286 Query: 288 LDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYL 347 +Y ++ A+ + L +AL+QP P L +A Y+ Sbjct: 287 FSHQYQLSRHKVHAVLQASSQDLLRALDQPDVLPGM-----GWPTDDTSLMAMMEAQYYI 341 Query: 348 LHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDE-KQLAALNTEIDN 406 D +L R LL + P+ AE+ L + E + L + T + + Sbjct: 342 NSQDPVALKRGIALLDNSLFVQPDQPLLLAERYLAGEALATLAGKSESEHLMGIGTHLAS 401 Query: 407 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMN 466 +V ++ + +++ + A++ + ++ Q + S L Y+L GK+ E+ G Sbjct: 402 VVQ-SDVVVPARVWEALTLQAILNNQPQQASQLLAQAASRGRSVLYYILQGKLAELDGRP 460 Query: 467 REAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYL 505 A DAY AF + T + F +++ + P L Sbjct: 461 EAAGDAYSQAFLMEATEQTYLLCQQLGFYSNMETLTPAL 499 >UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CR40_SHEPW Length = 512 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 123/516 (23%), Positives = 233/516 (45%), Gaps = 36/516 (6%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + R+ W P N++ + +++ ++ RL +LL+F + LSRDE+ID+VWK Sbjct: 1 MHKQSYRIDNWFFVPHENRLVLDEQEILIDNRLSNLLLFLCDNPRTTLSRDEIIDHVWKG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 SI+T+ V+TQ+I ELRK LK N++ YI TVPKRGYKL V +E + +L++ Sbjct: 61 SILTDQVITQAIFELRKILKTNNQHLQGYIITVPKRGYKLDTDVEVVNEVKTAPTVLNAA 120 Query: 121 PPIPEA-------VPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICV 173 I E+ A ++ H +N KS RF++ L+++ + V Sbjct: 121 HKIVESNAEQKSNFAAKEATKHKKATENEEPTTAVESAKSVRFSSSLAIVGALIAVAVLV 180 Query: 174 ALVAFSSLDTRLPMSKSRIL---LNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATS 230 V F+ D S ++ L PR I+ ++ N N+ + + V Sbjct: 181 --VFFNRADIGKQPSVEHVVYADLEPRVIEASIDNSLANA-----------SLQNGVIFK 227 Query: 231 LNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDK 290 + + + V+ ++++N + + K LS F+ R+ +++I+ + LD+ Sbjct: 228 VIEYLKYNVNYRVSFNPKDHLIAAKKLS--FIVTRENGID--YVNIEYFNKISNYQHLDR 283 Query: 291 RYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHG 350 +Y I+ + +++ + A N + + + + +P A L +A LH Sbjct: 284 KYPISEKHLKHSIKLMIDDVLDAFNIDIAKSEIDLVLRDMPEEPAALALSLEAIG-TLHS 342 Query: 351 DDKSLNRASELLGEIVQSSPEFTYARAEKALVD--IVRHSQHPLDEKQLAALNTEIDNIV 408 DK + A +LL + ++ P Y + + + I + L + +LN++ + I Sbjct: 343 YDKQFD-AIDLLAKALEIDPTSHYLLSMNYIYNMTIAYLGKSNLSIDSINSLNSDFEQI- 400 Query: 409 TLPELNNLS---IIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGM 465 LP+++ +Y+ A+ AL K E+ Q +N + + Y+L K+ E G Sbjct: 401 -LPQISESPESFKVYEAMALHALSKDLPIEAVQHLNQIPHTHNTIMTYILRAKLAESFGN 459 Query: 466 NREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYV 501 A + Y A + L + E+ +F + + + Sbjct: 460 PASAEEFYYQALHESGTPRVLDFAESLLFYSDLSKM 495 >UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vibrio shilonii AK1 RepID=A6CY17_9VIBR Length = 529 Score = 358 bits (919), Expect = 3e-97, Method: Composition-based stats. Identities = 120/529 (22%), Positives = 197/529 (37%), Gaps = 46/529 (8%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+ ++ +W+ P ++ +G + ++ RL L F ++ V SRDELI+ VW S Sbjct: 4 QKVQFKIDDWVFYPYEDKFVLHGEDIVIDNRLSKLFHFLCENPDTVFSRDELINEVWNGS 63 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIML---- 117 I+T+ V+TQ+I ELRK LK + YI TVPKRGYKL V E I Sbjct: 64 ILTDQVITQAIFELRKILKQHGNHPYGYIVTVPKRGYKLDATVEKVIETPQPVIETTDSV 123 Query: 118 ----------SSPPPIPEAVPATDSPSHSLNIQNTAT---PPEQSPVKSKRFTTFWVWFF 164 S+P +P + + P Q+ K F W+ Sbjct: 124 SEKIDVLRDESAPETTDIVLPEAGASTEVEASAAEPVRQRPAMQTATKKTGFRKRWIATA 183 Query: 165 FLLSLGICVALVAFSSLDTRLPMSK--------SRILLNPRDIDINMVNKSCNSWSSPYQ 216 LL +GI V +K S + L PR I + + + + Sbjct: 184 ALLVIGIGVGASYLHVKQNDRAAAKVIEPIATPSYLSLEPRYIHVILEDGV-------LR 236 Query: 217 LSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSI 276 +G + L T+ + V D P+S + F + R Q ++ I Sbjct: 237 DDLKVGFTKKLLELLKTYKDYRV------IYDGPASKVAANELKFAASK--RDNQDYIEI 288 Query: 277 KLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGAL 336 + V+ G LD++Y +T L+ L + N + + L LP+ A Sbjct: 289 EYVNRISGHKHLDRKYRVTEDMLKPSLKKSLDDLLDSFNIEIEKSLIADLVDELPNEAAS 348 Query: 337 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDE-- 394 + + + H D + RA EL+ E + SP+ Y A + ++ R P Sbjct: 349 IESALTSIGASYH--DYTHTRAIELIEEAKKLSPDNPYVVATGYIFNVSRMYLDPPHNMA 406 Query: 395 KQLAALNTE--IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLN 452 + L LNTE + + + A+ AL + ++ + T + Sbjct: 407 QYLEQLNTETLLKFEQFASANQTTPRVLEASAMMALTNDEPLQAKTILQTIPHERRTVFF 466 Query: 453 YVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYV 501 Y+L K E+ G A + Y A L E F + + + Sbjct: 467 YILNAKASELTGNRDAAEEFYYHAVLESSTIQVLNLSEVLFFNSDLSDI 515 >UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobacterium angustum S14 RepID=Q1ZPR1_PHOAS Length = 481 Score = 329 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 121/512 (23%), Positives = 221/512 (43%), Gaps = 58/512 (11%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 ++ + L+ + N + ++G+ LEPR+ LL F AQ+ G V +RDELID VW ++V++ Sbjct: 6 FKINDCLLITTENSLKKSGKTYILEPRITKLLSFLAQNQGIVFTRDELIDEVWDGAVVSD 65 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 VVTQSI ELRK LK DED +I T+PKRGYKL V + L E Sbjct: 66 QVVTQSIFELRKILKKLDEDH--WIITIPKRGYKLDADVQQIYIDPNTGFKLEEFHSSNE 123 Query: 126 ----------AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVAL 175 A PA N P S S W++ +LS+ + + Sbjct: 124 HTNDNSNLGTAFPAGPMTRAFSKPDNDIPPASVSNKISNLMLNHWLFDVGILSMLVLTLV 183 Query: 176 VAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFS 235 A + + P+ + L NPR I+I + + S +S + ++ ++L +++ Sbjct: 184 FASWANNDNAPI---KDLKNPRQINIEITSSSNQLYS----------IAKMIESTLFSYT 230 Query: 236 TFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVIT 295 + ++ S +GKTLS+ + Q + I L +N + K ++ Sbjct: 231 DYTS------SLHPNSEAGKTLSLYISDNNQ-------LHIDLYNNISHRSDFKKSLLLQ 277 Query: 296 NGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYL----LHGD 351 + N LL L + L ++ ++T+ + YL L D Sbjct: 278 SDKLYTSLNHLLNELIQTLTHD---------HQVTVTNAPIITDSTLLYKYLSLPDLIDD 328 Query: 352 DKSLNRASEL-LGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 410 + +N++ + +++ +SP+ +Y A++ + + + + +N D + + Sbjct: 329 EGQVNKSYLTDINKLILNSPKNSYLLAKRYIGYAIILTLDNKETSMPNLMNYARDLVKNI 388 Query: 411 PELNN----LSIIYQIKAVSALVKGKTD--ESYQAINTGIDLEMSWLNYVLLGKVYEMKG 464 N+ S A++ L +G D + Y +++ + S L Y+L GK+ ++K Sbjct: 389 SLQNSLLSLPSQTLNALALNQLYQGNIDLSQHYLSLSRQQSKQSSALYYILQGKILDIKN 448 Query: 465 MNREAADAYLTAFNLRPGANTLYWIENGIFQT 496 +++A + Y A L P T +N +F + Sbjct: 449 QHKQANENYSIAKYLAPSYETEVLCKNLVFHS 480 >UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vibrionales RepID=A5L3N2_9GAMM Length = 492 Score = 234 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 103/509 (20%), Positives = 183/509 (35%), Gaps = 28/509 (5%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V EWL P+ QI R +T++ RL LL F + G+ +RDELI+NVW I+ Sbjct: 6 SCFSVDEWLFVPNEGQILFAERTVTIDKRLTKLLEFLCLNPGQTHTRDELINNVWSGMIL 65 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 ++ VVTQ++ ELRK LK N + YI TVPKRGYK VI E + Sbjct: 66 SDQVVTQAVFELRKVLKQNSQQHNSYIITVPKRGYKFEADVIQSKIET---------DQV 116 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALV---AFSS 180 E P+T PS + P ++ P T ++ L + +V + Sbjct: 117 AEPEPSTAQPSDP----EQSPPADKLPQTDVSEKTKPNKRNLMIGLLLGAIVVMESGYIL 172 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 ++ + + G L+ +S + Sbjct: 173 YSASSSTPDEKVAPATQLRHYEFRYVMLDISDDVKNDPVLYGTITKFIEYLSAYSGIRI- 231 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL 300 EP + + F R + ++++ +N + L++RY Sbjct: 232 -----VHSEPLQKIAAIKLTFGTSRSRDGKHTRLTMRYHNNISDLSHLNRRYPTELPELH 286 Query: 301 AIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASE 360 +++ + AL P+ LP L L ++ L + Sbjct: 287 HTLYRMVDDILDALYIKVPKEELTESISQLPMAPDALKYTLSGLGVLY--NEAELPMVMD 344 Query: 361 LLGEIVQSSPEFTYARAEKALVDIV--RHSQHPLDEKQLAALNTEID-NIVTLPELNNLS 417 + Q+ P + ++ ++ ++ +A LN E + L E L+ Sbjct: 345 YFAKAQQADPSNDLVFVANYIGKVMNTFYASSGSKKQAIAELNQEAKPRLERLLEEGKLA 404 Query: 418 IIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAF 477 Y A+ AL + +++ + + + S L Y+LL K E +G A + Y A Sbjct: 405 RAYDANAIIALSEDDPEKAMKILLSMPPQNQSILTYLLLAKAEESRGNAGAAKELY-KAT 463 Query: 478 NLRPGANTLYWIENGIFQTSVPYVVPYLD 506 + F +++ ++ L+ Sbjct: 464 QGNSSLKAIQMASPLFFDSNLEPLLKELE 492 >UniRef50_A3WEA4 Adenylate cyclase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WEA4_9SPHN Length = 775 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 84/444 (18%), Positives = 170/444 (38%), Gaps = 42/444 (9%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 R+G LV PS+ +I+ + LEP+++ +L+ + G +LSRD+LID W +V + Sbjct: 27 FRLGSILVQPSLRRITGPDGERMLEPKVMQVLIALSSPVGTILSRDDLIDRCWDGRVVGD 86 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + + IS LR L++ D+ V + VPK GY+++V E + +L P P Sbjct: 87 TSINRVISILRTGLREVAGDAAV-VENVPKVGYRIVV-------REAPDDVLEKPAPDVI 138 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSL-GICVALVAFSSLDTR 184 P + + +Q ++R T +L+L G + L F+ Sbjct: 139 EQPTKPKVAATRRLQ-----------ANRRATIIIAGALAVLALVGAAIWLKPFAG---- 183 Query: 185 LPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKIN 244 P+ R+ + P +I + S + +A VG + T+ + + + Sbjct: 184 GPVGTVRMAMLPLEISEGVDPIYAAGLESELRAEFA-RVGAMEVTASESAKLLLGENL-- 240 Query: 245 YNIDEPSSSGKTLSIAFV--NQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAI 302 EP+ G L + FV + + A++ + + +V++ G T+L + + ++ Sbjct: 241 ----EPAEIGTKLGVQFVWSGRFEVEAERIVLDVNVVNSETGETVLSQSVNSATDSAQSL 296 Query: 303 QNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELL 362 +++ AL++P + + + A L + A E+L Sbjct: 297 PFRTARAVATALDRPVRATATQETIS-----ASDFRLYLVATGLLKTRGQDQVGAAREIL 351 Query: 363 GEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQI 422 + + +F A+ + Q P D Q+ N + Sbjct: 352 ELVTARNGDFADGWGALAMAYFL---QRPSDPSQIEG-NLAKALETAEKAVAIEPNTIGA 407 Query: 423 KAVSALVKGKTDESYQAINTGIDL 446 V + + + ++ + L Sbjct: 408 LKVFGMSAKDAETALASLGRVVKL 431 >UniRef50_B2T985 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia RepID=B2T985_BURPP Length = 504 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 61/282 (21%), Positives = 113/282 (40%), Gaps = 22/282 (7%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V G + + P+ ++ R+G + L R +D+L+ QH+G+V+ R +L+ W+ +V Sbjct: 23 EAVSFGPFTLFPTERRLERSGSVVQLGSRALDILIALIQHAGQVVDRRKLMSRAWRNIVV 82 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + +I+ LRK+L D ED Y+ VP GY + + E I S Sbjct: 83 DESNLRVNIAGLRKALGD-GEDGVRYVKNVPGIGYCFVG------QLTRERIATESSSHF 135 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 E P HS A P Q + R + L+S+ V Sbjct: 136 SEPFPRV----HSGGFAPGAARP-QGRDEVLRTLASDLRRHRLISI---VGPGGIGKTTV 187 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDL-------VATSLNTFST 236 + ++K P +I + +++ + + L+ +G+GDL +A L+T Sbjct: 188 AIALAKRLSGEFPSEIHVADLSEVAHGDTVALTLARLLGLGDLHHVPVTCIANYLSTRRA 247 Query: 237 FMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKL 278 ++ D +Y IDE +S + + + ++ Sbjct: 248 LIILDTCDYVIDEVTSLTTQILAVSSATYFVLTSREALRVRY 289 >UniRef50_B5WFU1 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. H160 RepID=B5WFU1_9BURK Length = 558 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 115/282 (40%), Gaps = 22/282 (7%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V G + + P+ ++ R+G + L R +D+L+ QH+G+V+ R L+ W+ +V Sbjct: 77 EAVSFGPFTLFPAQRRLERSGSFVQLGSRALDILIVLIQHAGQVVDRRMLMSRAWRNIVV 136 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + +I+ LRK+L D E Y+ VP GY + + E I+ S I Sbjct: 137 DESNLRVNIAGLRKALGD-GEGRVRYVKNVPGIGYCFVG------QLTRERIVAESGSQI 189 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 E P HS + A P Q + R + L+S+ V Sbjct: 190 AEPSPCV----HSADFGPGAACP-QGRDEVLRTLASDLRRHRLISI---VGPGGIGKTTV 241 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDL-------VATSLNTFST 236 + ++K + P +I + +++ + + L+ +G+GDL +A L+T Sbjct: 242 AIALAKRLSGVFPSEIHVADLSEVADGDAVALTLARLLGLGDLHHVPVTYIANYLSTRRA 301 Query: 237 FMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKL 278 ++ D +Y IDE ++ + + + ++ Sbjct: 302 LIILDNCDYVIDEVTALTMQILAVSSGTHFVLTSREALRVRY 343 >UniRef50_A3UTR1 Transcriptional regulator CadC n=1 Tax=Vibrio splendidus 12B01 RepID=A3UTR1_VIBSP Length = 652 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 115/322 (35%), Gaps = 20/322 (6%) Query: 183 TRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDK 242 + S + L PR I +++ + ++ G+ + + L T+ F V Sbjct: 340 HKAHESVHYLSLEPRYIYVSID-------DNLKTDAFKRGIIHKLMSYLTTYRDFRV--- 389 Query: 243 INYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAI 302 +DE I+F + + + ++ I + L + Y+I + Sbjct: 390 ---VVDETLVPNSANVISF--KSEIDGDREYLDITYFNRISNFRHLGRDYLIDPASLHTT 444 Query: 303 QNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELL 362 +L+ L + N + + + LP + L +A D++ + Sbjct: 445 MRSMLDDLLDSFNLDIQKSILKQQISELPKQEEALKLTLEALGLTFMTLDRT--DTLSKI 502 Query: 363 GEIVQSSPEFTYARAEKALVDIV--RHSQHPLDEKQLAALNTEIDNIVTLPELNNLS-II 419 + + + + + + + ++ + KQ+ ALN + + + N S + Sbjct: 503 AQANELESDNHFVMSNRYMYELADIFIMRSKNKNKQVEALNKKFKKQLLNAQNNANSYRV 562 Query: 420 YQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 479 Y A L + +++ ++ E S ++ ++L K+ E +G A + Y A Sbjct: 563 YDALAAYFLTEDNPEQAEYYLSLIPRNEYSVMSMIILAKIEESQGNPSMAEEYYYEAILE 622 Query: 480 RPGANTLYWIENGIFQTSVPYV 501 L + F++++ + Sbjct: 623 SGHPVVLKVAQTLFFKSNITEI 644 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 1 MQQPVVR--VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW 58 M++ ++ WL P +++ N + ++ RL LL FF Q+ V SRDELI+ VW Sbjct: 1 MKKERIQYSFDVWLFIPDEDKLIMNDEDVIIDNRLSKLLNFFCQNPKIVFSRDELINEVW 60 Query: 59 KRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV----IWYSEEEGEE 114 SI+T+ V+TQ+I ELRK LK + S +I TVPKRGYKL V V + + Sbjct: 61 NGSILTDQVITQAIFELRKILKAAERHSMGHIITVPKRGYKLDVDVHKTILVPASITTNT 120 Query: 115 IMLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTF 159 + ++ P+A + S + ++ + + Sbjct: 121 VSVADMNHAPKAFGSFPSTQSDAPDTSPVLDEDKKQQVEPKAESV 165 >UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KUS7_9GAMM Length = 615 Score = 168 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 64/451 (14%), Positives = 145/451 (32%), Gaps = 70/451 (15%) Query: 101 MVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLN---IQNTATPPEQSPVKSKRFT 157 + P E+E E ++P + P P + T P + V Sbjct: 175 VSPEQTAHEQETEIKPEATPNCSSDNDPLNQQPDPKSGHNYAASAPTNPSEKKVNKSSRL 234 Query: 158 TFWVWFFFLLSLGICVALVAFSSL------------------------------------ 181 F + + ++GI + + + S Sbjct: 235 GFAIGALVIGAIGIALGVSWWGSPSSTDASNGVSVDNMTELFASENQSTEAIGKSNQTTN 294 Query: 182 -----DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFST 236 D + S + L PR I + + + ++ G+ + + L T+ Sbjct: 295 HQVIEDHKAHASVHYLSLEPRYIYVRIDE-------NLKNDAFKRGIVHKLMSYLTTYRD 347 Query: 237 FMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITN 296 F + +DE ++F + + + ++ I + L + Y+I Sbjct: 348 FRL------IVDETLVPNSANVVSF--KSKVDGDREYLDITYFNRISNFKHLGRDYLIDA 399 Query: 297 GNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLN 356 + + +L+ L + N + + + LP + L ++ D++ Sbjct: 400 SSLHSTMRIMLDDLLDSFNIDIQKSILKQQISELPKQEESLQLALESLGLTFMTLDRA-- 457 Query: 357 RASELLGEIV---QSSPEFTYARAEKALVDIV--RHSQHPLDEKQLAALNTEIDNIVTLP 411 + L +I+ + P+ + + + L ++ + EK + LN + L Sbjct: 458 ---DTLKKIIAANELEPDNHFVMSSRYLYELADIFLLKSSQKEKLVQKLNDRFGKKLLLA 514 Query: 412 ELNNLS-IIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAA 470 E N S IY A +L + + + + + E + ++ ++L K+ E KG A Sbjct: 515 ENNPTSYRIYDALAAYSLTQDNPNAAERYMTLIPRSEYNVMSMIILAKLKESKGNPAAAE 574 Query: 471 DAYLTAFNLRPGANTLYWIENGIFQTSVPYV 501 + Y L + F +++ + Sbjct: 575 EYYYETILESGYPVVLKVAQTLFFNSNISEI 605 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 13/160 (8%) Query: 1 MQQPVVR--VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW 58 M++ ++ WL P +++ + + ++ RL LL FF Q+ V SRDELI+ VW Sbjct: 1 MKKERIQYSFDVWLFIPDEDKLIMDNEDVIIDNRLSKLLDFFCQNPNIVFSRDELINEVW 60 Query: 59 KRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLS 118 SI+T+ V+TQ+I ELRK+LK + S YI TVPKRGYK V V ++ +L Sbjct: 61 NGSILTDQVITQAIFELRKTLKSAERHSMGYIITVPKRGYKFDVEV--------KKTVLV 112 Query: 119 SPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTT 158 PP + V D+ S+ + + E SPV S + Sbjct: 113 PPPIVTNTVSLADTVSY---DETVSQEQEASPVSSPNSES 149 >UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax=Stenotrophomonas RepID=B4SI58_STRM5 Length = 774 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 15/224 (6%) Query: 1 MQQPVVRVGEWLVTPSINQISRNG--RQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW 58 ++ ++VG+ ++T S ++ G R L L P+ + +L + G V++R+EL VW Sbjct: 9 VEADRIQVGDCVITLSSREVEVEGARRPLRLTPKALGVLRVLMRQPGRVVTREELFAEVW 68 Query: 59 KRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLS 118 ++ TN V+TQ++++LRK ++D++ YI T+ K GY+L+VPV+ + + Sbjct: 69 PDTLPTNDVLTQAVTQLRKVFANDDDNGQAYIETIAKSGYRLLVPVLVLDDVA----PVV 124 Query: 119 SPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAF 178 +PE +PA S P +S + R WV +L+ ALV Sbjct: 125 EVDAVPEVMPALAGASAIPTATVLPAPSRRSGWRQLRRQLLWVLGVLMLA-----ALVVM 179 Query: 179 SSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIG 222 ++L R S +P D + + S PY+L A Sbjct: 180 ATLLLRRGPETS----SPVDAAVENGVRVIGSPQRPYRLITATS 219 >UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21GQ2_SACD2 Length = 425 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 71/406 (17%), Positives = 134/406 (33%), Gaps = 62/406 (15%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + + +I+ G +++EP++ D++V+ ++ ++SRDEL + +W V++ Sbjct: 3 FHFNDVEIDTKQYRITCAGLTVSVEPKVFDIIVYLIENRNRLVSRDELFEKIWDARAVSD 62 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 ++ I RK+L D+ E I TV RGY+ + V S E I SS P Sbjct: 63 TTLSNHIKSARKALGDDGEQQHT-IKTVRGRGYQFIAEVS-VSALTDEPIAASSSAPSER 120 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 + P + RF F + + L+ + +R Sbjct: 121 SAPVQST---------------------NRFQPKATIAFLIFGCLCVLTLIGYLYNLSRT 159 Query: 186 PMSKSRIL-------------LNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLN 232 + L N I +V S +S +A + L Sbjct: 160 IEPQQPNLSPLNPTLSPPLHAQNTTIPYILVVPFSVSSGEQSKWEPFADQTTRELIQYLR 219 Query: 233 TFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMS--------------IKL 278 S V S + KT + Q + ++L Sbjct: 220 KISGIRV------VPPPSSFTFKTNKVRAHITNQLPEVNYIIDGVVKEDGNGNFRISVEL 273 Query: 279 VDNADGSTMLDKRYVI--TNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGAL 336 + D + + Y I NQ +Q ++ S++ +L + + TL ++ Sbjct: 274 ENITDNTLVWSNNYDIKVNENNQFKVQAEIAASVTASLQVEVLEAERRTLAQVPTSSVTA 333 Query: 337 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALV 382 + Q L S+ +A L + ++ P F E + Sbjct: 334 YELYVQGQYQLGAMTHTSVLQAITLFSDAIEIDPNFE----EAYIA 375 >UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIZ5_ACIBL Length = 717 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 96/185 (51%), Gaps = 18/185 (9%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + +W V P INQ+ R LEP+++ +LV A HS EVLS++ LI VW + V++ Sbjct: 5 FHIADWEVEPQINQVRRQNHSFHLEPKVMQVLVELAAHSDEVLSKEHLIHAVWSDTFVSD 64 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 V+T+ ISE+R+ L D+D +P I T+PK GY+L+ PV++ P Sbjct: 65 DVLTRCISEIRRVL-DDDARAPKIIQTIPKSGYRLIAPVVFDK-------------AAPP 110 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 +++ + ++ TPP ++ ++ W+ +L++ + V F+ TR Sbjct: 111 KNGSSNGSTATVEAATVETPPLKTAETPRKNLAPWIVAVGVLAIAV----VYFAIRATRP 166 Query: 186 PMSKS 190 P+++ Sbjct: 167 PVAQP 171 >UniRef50_Q6GZK0 Cad operon transcriptional activator (Fragment) n=9 Tax=Enterobacteriaceae RepID=Q6GZK0_ECOLX Length = 97 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 97/97 (100%), Positives = 97/97 (100%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR Sbjct: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRG 97 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRG Sbjct: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRG 97 >UniRef50_Q89GS8 Transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89GS8_BRAJA Length = 947 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 97/263 (36%), Gaps = 27/263 (10%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q + G + + + ++G L L R +D+L+F A+ +GEV+ + ELI VW Sbjct: 7 QDSTIAFGPFRLLAKSRLLEKDGAPLHLGGRALDILIFLAERAGEVVDKRELIKRVWSGV 66 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V + I+ LRK+L D E Y+ VP RGY P++ + E S P Sbjct: 67 TVDEGSLRFHITTLRKALGDAGE-GARYVVNVPGRGYCFTAPLLHPAPSESRTSPPVSSP 125 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTF-------WVWFFFLLSLGICVA 174 A SP + + A + + RF T ++ G A Sbjct: 126 H------ALPSPLARMIGRGEAVEKISAELALHRFVTIVGPGGIGKTSVALAVAHGELTA 179 Query: 175 LVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTF 234 S ++ +R++ P I + + P + L + Sbjct: 180 FDGQVSFVDFGALTDARLV--PGTIAATLGLTVNSDDPMP-----------GLLAFLRSR 226 Query: 235 STFMVHDKINYNIDEPSSSGKTL 257 T +V D + +DE + + L Sbjct: 227 RTLLVFDSCEHILDELAPVAERL 249 >UniRef50_Q1ITK1 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITK1_ACIBL Length = 724 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 92/194 (47%), Gaps = 7/194 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-R 60 +Q +VR G + ++ + G +L ++ R ++L + GE+++R++L +W Sbjct: 7 RQQLVRFGPYCANRQTGELYKFGTRLKIQDRPFEILSILLESPGELVTREDLRTRLWPDG 66 Query: 61 SIVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSS 119 + V ++ ++ ++ +LR L D+ D+P YI TV RGY+ + V + E L++ Sbjct: 67 TFVDFDNNISTAVHKLRSVLSDS-ADAPRYIETVGGRGYRFIGTVESDVPADSE---LAA 122 Query: 120 PPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFS 179 P P TDS S + P + + T W+ + +L + + L+A + Sbjct: 123 SVQAPANKPETDSTSARVVSVIVKKPVALTTAPASVETRSRRWWLLIPAL-VLLGLIAAA 181 Query: 180 SLDTRLPMSKSRIL 193 + P ++ R++ Sbjct: 182 AWIYFTPPAEPRVV 195 >UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax=Shewanella amazonensis SB2B RepID=A1S359_SHEAM Length = 729 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 7/192 (3%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 R+G ++V P I++NG LE R++ +LV + +G +SRDELI VW+ V++ Sbjct: 7 YRLGPYMVIPERCVIAKNGSDTKLELRVMQVLVCLLERAGRPVSRDELIREVWRGGQVSD 66 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + + + I++LR +L D D S I TVPK GY L+ V + L+ +P Sbjct: 67 NAINRIIAQLRSALGD-DARSQQVIQTVPKVGYLLIAEVEPLEGQVITPSDLTHSSEVPN 125 Query: 126 AVPATDSPSHSLNIQNTAT--PPEQSPVKSKRFTTFWVWFFFLLS----LGICVALVAFS 179 A N Q +++ P+ PV ++ +L+ +G+ ++L+AF Sbjct: 126 AAAPVAPIDIEDNQQRSSSTMSPDIKPVPAQPKPAQLKPGRLILATYALVGVLLSLLAFI 185 Query: 180 SLDTRLPMSKSR 191 DT KS+ Sbjct: 186 VWDTLTQSDKSK 197 >UniRef50_Q2NVH3 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NVH3_SODGM Length = 251 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 91/224 (40%), Gaps = 12/224 (5%) Query: 11 WLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQ 70 + P + G L + ++L + + E +D VW VT+H + Q Sbjct: 21 FTFYPKKRCLELEGTIHQLRKKESEVLALLCRKYPNPVHHSEFLDEVWGGGYVTSHSIAQ 80 Query: 71 SISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPAT 130 I LRK LK N ++ I T+PK GY+L + + +EG E+ + A Sbjct: 81 VIRSLRKLLKKNGKN---IILTIPKLGYRLGIEPQY---DEGNEVKIFDFSQENAGNSAE 134 Query: 131 DSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKS 190 + S ++ +TPP + S + WFF LL I + L S M KS Sbjct: 135 EDYFVSSGDRHPSTPPPRLYQTSGKVVK---WFFRLL---IFMLLFPASYGVYCGLMPKS 188 Query: 191 RILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTF 234 ++ P+D +I M+ + Y I GD+ T++ + Sbjct: 189 QVFHQPKDKEILMIIPRSGIKDVEVKDDYVILYGDITKTAMLSN 232 >UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJR7_CELJU Length = 499 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 88/487 (18%), Positives = 161/487 (33%), Gaps = 71/487 (14%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V + W + N +S +++ LE RL+ LL+ F H GEVL ++ ++ +W+ +V Sbjct: 19 KVFAIDSWRLCVHSNSLSSGDQRVELEHRLVALLLMFIDHPGEVLEKERILATIWQGKVV 78 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + + +IS LRK+L DN SP YI T+P GY+ + E ++P P+ Sbjct: 79 NDDSLAVAISHLRKALGDN-PRSPRYIKTIPGVGYQFIASAAPVEE------APATPAPV 131 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 PEA P I P + P R W+ + L V L A+ + D Sbjct: 132 PEAAPLNPV------IAERGYPHRRFP----RSPGLWI----PILLACLVLLTAWYARDE 177 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWS------------SPYQLSYAIGVGDLVATSL 231 + P+S LL + + W P + +G+ L Sbjct: 178 KKPVSSPDELL--VLAGTQLASGQAEGWRQAIGSFRQVLKLQPRTAAAYLGIAQAKMWLL 235 Query: 232 NTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKR 291 H + + + + + +R C D + Sbjct: 236 GEQLAQPAHCDEVIGLLDKAIQIDSSLVDAWRERGNAYFWCR-----RDTLTAEANYQRA 290 Query: 292 YVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGD 351 + A L + + L + L ++ + Sbjct: 291 MALAPEGDTAPMQ------LAQLRLAQGRFEESLALMDLARQHNPLNYSVPMVVWIYQMN 344 Query: 352 DKSLNRASELLGEIVQSSPEFTY--ARAEKALVDIVR-----------HSQHPLDEKQLA 398 + + A L I ++ P+ Y A++ L + R + D+ +L Sbjct: 345 RRQ-DLAWAELQRITRAEPDDRYYHVSAQRVLASMGREEESFAHWQWLMADAGFDDDKLQ 403 Query: 399 ALNTEIDNI------VTLPELNNLSIIYQIK-----AVSALVKGKTDESYQAINTGIDLE 447 A+ L E + + + Q A AL G+T ++ + + L Sbjct: 404 AVQAAFAEAGLSGVNRWLLETRDTADLGQYLPPLSWARYALAAGETTQALEFLEQAAALP 463 Query: 448 MSWLNYV 454 L ++ Sbjct: 464 QVPLLWI 470 >UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium loti RepID=Q987X1_RHILO Length = 903 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 11/257 (4%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + R G + + ++ R+G+ L L R D+L +GEV+ +ELI VW Sbjct: 1 MDGQIFRFGPFEMHREQRRLYRDGKLLQLGSRAFDILQILVMRAGEVVRHEELIAMVWPD 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 + V + + +++ LR++L + IA VP RGY PV + E + +S Sbjct: 61 TFVAENNLRVNMTALRRALGPEGSLTNGLIANVPGRGYSFTAPVAHQTVEHAPDRHDNS- 119 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 E + P ++ ++TA V S+R T + + V L A Sbjct: 120 ----EGLRTLPRPLGAVFGRDTALATLAGQVPSRRLVT--ITGAGGIGKTTLV-LAASHH 172 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 L P + L P + + + ++ + + + ++ Sbjct: 173 LRNAYPDGVILVDLAPISDPQLVASAVATALGQAFRNESVVS---ELTAVIADRRILIIL 229 Query: 241 DKINYNIDEPSSSGKTL 257 D + +D + + L Sbjct: 230 DSCEHVVDPAALLSEQL 246 >UniRef50_Q89XL4 Transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89XL4_BRAJA Length = 989 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 107/282 (37%), Gaps = 28/282 (9%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + ++ G + + PS ++ R+G L L R D+L+ + +G V+S+ EL+ W + Sbjct: 47 REILVFGPFRLDPSQRRVERDGSPLQLSGRAFDILLALVRQAGNVVSKTELMATTWPGAA 106 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 V + + I+ LRK+L D D Y++TV +GY + V + + P Sbjct: 107 VEENSLRVHIAALRKALGD-GNDGVRYLSTVSGQGYCFVAAVSRPEQRQ-------PAPT 158 Query: 123 IPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLD 182 P V + + + A ++++RF T V Sbjct: 159 NPTYVHNLPAHPRQMVGREQAIQDISERLRAQRFVT-------------VVGPGGIGKTT 205 Query: 183 TRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGV-------GDLVATSLNTFS 235 + + + + + ++ ++ P ++ ++G+ + +AT L Sbjct: 206 VAISAGHALLAEFAGHVHFVGLGETGSAAPVPAIVASSLGLRARSNDPTNSLATFLRDMR 265 Query: 236 TFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 ++ D + I+ ++ + L A + + ++ Sbjct: 266 MLLILDCCEHVIEAAAALAERLYQAAPELHILATSRELLRVE 307 >UniRef50_A4CDR3 Putative transcriptional regulator n=2 Tax=Pseudoalteromonas tunicata D2 RepID=A4CDR3_9GAMM Length = 709 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 75/359 (20%), Positives = 139/359 (38%), Gaps = 25/359 (6%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++++G + + +S + +++ LEP++ D+L +F QH +S EL +N+W+ V+ Sbjct: 1 MIQIGRYQLDEEEMVLSCDDQRVLLEPKVFDVLTYFCQHHNRYISMTELHENIWQGRCVS 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + V + IS++R + D D +P YI ++PKRGYKL+ PV + E+ E + S Sbjct: 61 DAAVRRIISKIRILMND-DHKNPTYIQSLPKRGYKLICPVEYDIEDAAESSSVEST---- 115 Query: 125 EAVPATDSPSHS-LNIQNTATPPEQSPVKS-----------KRFTTFWVWFFFLLSLGIC 172 AV TD H+ N N T PE+ + K+ F F LL L IC Sbjct: 116 -AVAITDLSDHNEANNYNEPTEPEEHQDLAEELAGNFVHVVKKPKKFKYTFLSLLMLCIC 174 Query: 173 VALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLN 232 V + + P ++N D V +S + + G + Sbjct: 175 V--FGYLAKSWFFPAIVQTQVVNTLPGDKIAVTQSADGSYLAFSGQVHDESGFQIYVKHQ 232 Query: 233 TFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRY 292 + F + + S S+ F + + + + + + +L Y Sbjct: 233 SDFDFRPITHHAHLPSSIAFSFDNKSLYFSDTSKINSSLNQIKLDGENRE--IEILVDNY 290 Query: 293 VITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGD 351 + + A ++ A + ++ +T QA + GD Sbjct: 291 FLISDVFTA---RTSNNVFFAAKKSTEGPFLIYEYDVVNKAVTAITASSQAESLDIKGD 346 >UniRef50_B2JV11 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia RepID=B2JV11_BURP8 Length = 966 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 14/153 (9%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q +R+G+ V+ + +GR++ + R D+L G+++S+DE++ VW + Sbjct: 37 QMTTIRIGQIEVSLDHRDVRLDGRKVPIGSRAFDILALLIAARGDLVSKDEIMRAVWPTT 96 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 +V + + IS LR++ D E IATVP RGY+L++ + + + Sbjct: 97 VVEKNNLQVHISALRRAFGDERER----IATVPGRGYRLIM----------QAELGAHAA 142 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSK 154 P +A ++ SL + A P + P+ ++ Sbjct: 143 PTRDAASEREATGMSLPAVSEAARPARRPLPAR 175 >UniRef50_B2JV05 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JV05_BURP8 Length = 658 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 62/129 (48%), Gaps = 4/129 (3%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++R+G + + + +G+ + + R D+L + G ++S++ +++ +W S+V Sbjct: 1 MIRIGPLDIDLACREARVDGKPVRIGNRAFDMLELLIEAQGGLVSKEAILERIWPESVVG 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 ++ + +S LRK L D+ + I T+P RGY+L+ + + P Sbjct: 61 DNNLQVHMSALRKLLGDSRD----LIKTIPGRGYRLVRGAAIVRHADTAASYVERQTAAP 116 Query: 125 EAVPATDSP 133 +PA +S Sbjct: 117 HNLPACNSA 125 >UniRef50_B1YN09 Transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=B1YN09_BURA4 Length = 481 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 5/141 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V+ +GE+ + + + + GR++ L R D+L SG ++S+DEL+D VW Sbjct: 20 EHSVIALGEFELNLGMRALYKAGREVPLGSRAFDILSVIVLASGRIVSKDELMDTVWPGV 79 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V + + +S +RK+L D I TVP RGY+ V S E G ++ Sbjct: 80 FVEENNIHVHLSAVRKALGD----HRQLIDTVPGRGYRFKV-FDGMSAEPGRDVPTERHA 134 Query: 122 PIPEAVPATDSPSHSLNIQNT 142 P+ P H L + T Sbjct: 135 PLFRNADTMTPPRHRLPGRRT 155 >UniRef50_B1M5U0 Transcriptional regulator domain protein n=3 Tax=Rhizobiales RepID=B1M5U0_METRJ Length = 525 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 68/170 (40%), Gaps = 3/170 (1%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + R G + + + ++SR+G ++ +EP++ DLL + V+SRD+L++ VW IV+ Sbjct: 2 IYRFGPFTLDSARRELSRDGAEIAVEPQVFDLLRVLIERRDRVVSRDDLLEAVWNGRIVS 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + I+ R ++ D +I T+P++G + + V + E I Sbjct: 62 EATLGSRINAARTAIGDTGT-GQRWIRTLPRKGVRFVGAVREAASEVSPGIAPEDAAEPG 120 Query: 125 EAVPATD--SPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGIC 172 A L N + PEQ + L + Sbjct: 121 VTWRAGPRLPAVAVLPFTNMSADPEQDYFADGMTEEIITALSRVSGLFVI 170 >UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=A5UT44_ROSS1 Length = 261 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 2/114 (1%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + +G + P ++ N + L P+ +LL A H G V SR+EL++ VW S + Sbjct: 142 CIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSREELLERVWGYSYMG 201 Query: 65 N-HVVTQSISELRKSLKDNDEDS-PVYIATVPKRGYKLMVPVIWYSEEEGEEIM 116 N V ++ LR L+ E S I+T GYKL P + +E G I Sbjct: 202 NTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLESPALLEAEVGGTGIH 255 >UniRef50_Q1IKQ5 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IKQ5_ACIBL Length = 945 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 66/430 (15%), Positives = 147/430 (34%), Gaps = 50/430 (11%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW-KR 60 + VV G + + +++ G + L+ + ++L + GE++SR+E+ +W Sbjct: 7 EAKVVAFGLFKADLNARSLTKGGASVRLQDQPFEVLGLLLERPGEIVSREEIRQRLWSSD 66 Query: 61 SIVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSS 119 + V + + +I +LR +L D+ +P ++ TVP+RGY+ + PV S E Sbjct: 67 TFVEFDDGLNTAIKKLRTALGDSAL-NPRFVETVPRRGYRFIAPVSVLSPVATPE----- 120 Query: 120 PPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFS 179 PE+ + Q T T P F+ ++LG+ ++ +A Sbjct: 121 ----PESQTEDVVIASRERSQITITQP------------HHPVFWSTVALGLAISFLAGG 164 Query: 180 SLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYA-IGVGDLVATSL------- 231 S S + P + + + + ++ + ++ T L Sbjct: 165 WYYRSRSGSDSVVSAAPIRMRPAVAVLGFHDLTGRRDTAWLSTAIAQMLCTELGAGEQLR 224 Query: 232 --NTFSTFMVHDKINYNIDEPSSSGKTLSIA------------FVNQRQYRAQQCFMSIK 277 + ++ ++ ++ + + Q + ++ Sbjct: 225 MVSGEQVARARKEVAWDREDTLEKASLTKLRSRLGSDYVVIGAYTVVDSPAGPQIRLDVR 284 Query: 278 LVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKI-LPHRGAL 336 L D G T+L++ A+ + + L L + + LP Sbjct: 285 LQDARAGETLLEESDTGNQSELFALVSHTGQRLRDRLGIDRANGDHDAQIRASLPKNVEA 344 Query: 337 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQ 396 + + + D + +A +LL + + PE + A A + ++ Sbjct: 345 ARLYSEG---VAQLRDGNAVQARDLLTKAIAIEPEHALSHAALAEAWTMLGYDSRASQEV 401 Query: 397 LAALNTEIDN 406 A N D Sbjct: 402 QLAFNLSQDL 411 >UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VGJ6_SPHWW Length = 382 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 14/182 (7%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 G++++ P ++ R+G + L R +D L +++G ++ +D + VWK VT+ Sbjct: 6 YHFGQFVLDPEDRRLLRDGVPVELNARYLDALALLVRNAGSLVGKDRFLSEVWKDVPVTD 65 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 +TQ I LR+ L D D P +I TVPK GY+ + V W E P Sbjct: 66 EALTQCIRLLRQRLGD-DASRPHFIETVPKHGYRFIAEVDWRESSAPAEDAAPHTLPPSA 124 Query: 126 AVPATDSPSHSLNIQNTATP-------------PEQSPVKSKRFTTFWVWFFFLLSLGIC 172 A A + P+ S V+ L+L + Sbjct: 125 APSALRRVAMMAGAGTLGAGGAGLIGGLAYGFIAATPPLPSGGGAASSVFVLLWLTLAVA 184 Query: 173 VA 174 + Sbjct: 185 LV 186 >UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022A1_SOLUE Length = 605 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 69/401 (17%), Positives = 138/401 (34%), Gaps = 41/401 (10%) Query: 27 LTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDS 86 + LEP+ +++L+ + GEV++R +L+ VW + V ++ +IS LR+ L D Sbjct: 2 VALEPKAVEVLLILVEKRGEVVARQDLMSAVWPDTFVEESNLSSNISILRRQLG-TPPDG 60 Query: 87 PVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPP 146 YI T+PKRGY+ + V E S EA ++ + T Sbjct: 61 GDYIQTIPKRGYRFVAAVNQAGSELEAATAEVSEIVSAEATTTVRVRKLTIRPRVILTSA 120 Query: 147 EQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNK 206 V +W L ++ I I + + Sbjct: 121 AGLLVVVLPLLYLGLWHGRLPGFA-----------------AEPHIG----AIAVLPLEN 159 Query: 207 SCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEP-----SSSGKTLSIAF 261 + Y +A G+ + + + V + + + + + L + Sbjct: 160 LSGDPAEEY---FADGMTEALTADMAQIGALRVIARASVMQYKGTKQPLAQIAERLHVEA 216 Query: 262 VNQRQY--RAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWP 319 V Q+ ++ L+ A G + + Y + G+ L +QN++ +++ + Sbjct: 217 VVSGAVLRSGQRVRITAALIRAATGQQLWARTYERSLGDVLDLQNEVARAIAAEVQAKLT 276 Query: 320 QRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEK 379 + Q L + P + + + Y +++ E ++ P YA A Sbjct: 277 AQEQIRLARSRPVKADAYDAYLKGRYYYNQFTVDGFSKSIEHFERAIKLDPN--YASAYA 334 Query: 380 ALVDIVRHSQH-------PLDEKQLAALNTEIDNIVTLPEL 413 L D + + + + L A N + LPE Sbjct: 335 GLADALASLEQIGAARSEDVHPRALEAANKALAMDDALPEA 375 >UniRef50_C3KKU6 Putative transcriptional regulator n=1 Tax=Rhizobium sp. NGR234 RepID=C3KKU6_RHISN Length = 927 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 105/267 (39%), Gaps = 25/267 (9%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + G + + P+ + RNG + L R ID+L+F H GE+ + E++ VW + Sbjct: 2 EDAFHFGSFSIAPARRSLLRNGSVIPLGSRAIDILLFLLSHPGELKTNAEIVRQVWPDTF 61 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 V + +S LRK+L D + P +IA VP RGY+ + P+ E + S P Sbjct: 62 VEEANLRVHLSALRKALGDTQRE-PQFIANVPGRGYRFIAPI------ERRGRAVVSSPS 114 Query: 123 IPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSL----GICVALVAF 178 + P + AT +Q + L+++ GI + VA Sbjct: 115 LLRLRAERPPPRIFGRERVVATILDQ------------LGRGRLVTVAGPGGIGKSTVAR 162 Query: 179 SSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFM 238 + + S+ + + +++ S + LS + +A +L + + + Sbjct: 163 AVVSNLTSDSEVLWIDLSEFANGDLIPTVVAS--ALGVLSRTDDIIRDIALALQSRALLL 220 Query: 239 VHDKINYNIDEPSSSGKTLSIAFVNQR 265 V D + + + + L N R Sbjct: 221 VMDSCEHVVVSAAEFVENLLADTANLR 247 >UniRef50_A4YSP3 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YSP3_BRASO Length = 1015 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M Q G + + + R+G ++ L P+ +LV + +GE+++++EL++ VW Sbjct: 1 MTQKTFVFGPFQLDQQNALLRRSGERILLAPKPFGVLVHLVERAGELVTKEELLNAVWSD 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEE 114 V+ ++ +I+ LR +L DN + SP YI TVP+RGY+ + V Sbjct: 61 VHVSESSLSVTINALRTALDDN-KQSPRYIETVPRRGYRFIAAVEIAHHLADPA 113 >UniRef50_A5P8P2 Transcription activator ToxR n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P8P2_9SPHN Length = 342 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 1/100 (1%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 +VR G++ + ++ R G + L R D LV A H GE++S+ +D+VW+ VT Sbjct: 7 LVRFGDFTLDLHGRRLLRGGEAVELGSRYFDALVLLATHPGELISKTRFMDDVWRGIPVT 66 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 + +TQ+I LR++L D +P YI TVPK GY+ + + Sbjct: 67 DEALTQAIRTLRRALGDE-ASAPRYIETVPKHGYRFIAEL 105 >UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KKU4_SHEWM Length = 711 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 94/408 (23%), Positives = 155/408 (37%), Gaps = 50/408 (12%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M++ VG++ V S NQ+++ + TL P+ + +L A++ V+S+DEL+ +VW Sbjct: 1 MEEQ-YWVGDFFVDLSRNQLTQKQQSQTLPPKALAVLTCLAKNKASVVSQDELLSHVWPN 59 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 S+V + + + I++LRK+L D D YI T K+GY L V V W E SSP Sbjct: 60 SVVAPNTLQRCIAQLRKALGD-DGKVQRYIKTHAKQGYSLEVDVHWQQPEPNNANKDSSP 118 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 P AV DSP SK + LL + V F Sbjct: 119 LPTTLAVQVEDSPHQ----------------PSKTVSRLISAVIALLIIVFGVIGYQFFP 162 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSY--AIGVGDLVATSLNTFSTF- 237 L P+ + + + + + Y + L A +L T F Sbjct: 163 LTASTPLVVKSMQPLTSTDNRELASIYSPDGEYVIFMRYPEVLCTSHLWAKNLATQEEFQ 222 Query: 238 MVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNG 297 + D +Y + G L AFV Q S + + D + L + T Sbjct: 223 LTQDLGSYGSLAFADDGSKL--AFVEQNSCGQAVTQKSCFQLQSLDFAKAL--KSPQTPT 278 Query: 298 NQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAH--DYLLHGDDKSL 355 + N + SL W + Q TL + L HR L+ +H D + +D +L Sbjct: 279 TLMECNNSKIRSL------QWLNQDQVTLMQQLAHRWQLIRYSISSHSSDTIFSLEDGNL 332 Query: 356 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 403 ++ Y+ ++ + S H D++ + L + Sbjct: 333 I--------------DYDYSPSQNLI---ALTSIHHDDQRYIETLTPD 363 >UniRef50_B8ESY3 Transcriptional regulator, winged helix family n=1 Tax=Methylocella silvestris BL2 RepID=B8ESY3_METSB Length = 956 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 4/160 (2%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + V G + ++ S +SR+G + + R +D+L+ + +GEV+S EL+D VW + Sbjct: 8 LSGEAVLFGPYRLSASERLLSRDGAPVAISGRALDILIALIERAGEVVSVQELLDRVWPQ 67 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 +IV + I+ LR+ L ND Y+ VP+RGY ++ P+ + E I Sbjct: 68 TIVEEPNLRVHIATLRRVLG-NDSQGSRYVINVPRRGYSIVTPLYRLAREGAVAI---DA 123 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFW 160 I E P+ +P S+ ++ + SKRF + Sbjct: 124 TVISERQPSLPTPLQSMIGRSGTVAELSVQILSKRFISVI 163 >UniRef50_B0RLM8 Transcriptional regulator n=6 Tax=Xanthomonas RepID=B0RLM8_XANCB Length = 1172 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 41/110 (37%), Positives = 70/110 (63%), Gaps = 1/110 (0%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 P R+G LV P + +G ++TLEPR++++LV A+ +GEV+S ++L+ +VW S Sbjct: 74 PRFRLGPLLVEPERLMLIGDGERITLEPRMMEVLVALAERAGEVISAEQLLIDVWHGSFY 133 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGE 113 ++ V ++I++LR+ L D D P +I T+ KRGY+L+ VI+ + G Sbjct: 134 GDNPVHKTIAQLRRKLGD-DSRQPRFIETIRKRGYRLLPKVIFPEDYRGA 182 >UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Tax=Proteobacteria RepID=A6UHF5_SINMW Length = 531 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 12/153 (7%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 ++++ +++ G+ +++ P++ DLL+ V+S+DEL+ VW IV+ Sbjct: 3 FMFADYVLDRERRELTLRGQVVSVGPQVFDLLLHLVGTRDRVVSKDELLQAVWGGRIVSE 62 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEE----------GEEI 115 +T I+ +RK++ D + + TV ++G++ + + E G Sbjct: 63 STITSHINAVRKAIGDTGGEQ-RLVRTVARKGFRFVGDIRIADSAEARQPGGPGSAGHTS 121 Query: 116 MLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQ 148 + S PP A+P S + L QN + +Q Sbjct: 122 LGSKEPPPALALPDKPSIT-VLPFQNLSGDADQ 153 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 5/96 (5%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 +R G + P+ GR L L P+ DLL A H G+V SR++L+D +W + Sbjct: 133 IRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWGPDFQGD 192 Query: 66 -HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V I LR L + I TV GY+ Sbjct: 193 ARTVDAHIKNLRDKLGE----GAGLILTVWGVGYRF 224 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + V+ G ++ +++ +G+ + L R +LL FA+H +V +R++L +W Sbjct: 130 RAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQRLWGE-F 188 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 H VT I LR+ +++ D +P YI TV GY+ Sbjct: 189 GDRHTVTVHIGRLREKIEE-DPANPRYIVTVWGVGYRFDGE 228 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 6/132 (4%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V+R G +V + +R+G L L R DLL F + G +R EL+++VW S Sbjct: 181 EAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEHVWGWS 240 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 VT I LR+ ++D D +P + TV GY+ + Sbjct: 241 YGDPSTVTVHIRRLREKIED-DPTAPRMLVTVWGVGYRYDP-----GTPRPDSTPRPDST 294 Query: 122 PIPEAVPATDSP 133 P P++ P DS Sbjct: 295 PRPDSTPRPDST 306 >UniRef50_Q087B1 Lysine decarboxylase transcriptional regulator, CadC n=9 Tax=Shewanella RepID=Q087B1_SHEFN Length = 1102 Score = 131 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 77/473 (16%), Positives = 170/473 (35%), Gaps = 39/473 (8%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M G+W + P N + +LEP+ +D+L QH GEVL+ D++I++ W Sbjct: 1 MNDSTFFFGDWQINPQSNSVQSGDVIRSLEPKAMDVLRLLCQHQGEVLAADDIINHCWNS 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV----PVIWYSEEEGEEIM 116 + ++ + + I++LRK+L D +P YI T+ KRGY+ + P+ +++ ++ Sbjct: 61 IAIGDNPLHKVITQLRKALGDQ-ASNPQYIETIRKRGYRTIASVEFPIGHHTKVTTQQWQ 119 Query: 117 LSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWV-------WFFFLLSL 169 +SP P A DS + T + + + F + L++ Sbjct: 120 GASPFPGLRAFDTNDSNVFFGRSEQVDTLLNRITKQVEFGRAFCLILGPSGTGKSSLINA 179 Query: 170 GICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCN--SWSSPYQLSYAIGVGDLV 227 GI L++ + + + + + L +++ + W Q + D++ Sbjct: 180 GIMPNLMSKNGFNGVGVIDNANLDLADVTKGRLIIDIASAMLDWEINDQAVFTDCSADML 239 Query: 228 ATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTM 287 A L ++ + + SS + + + S+ D + Sbjct: 240 ANKLQNDINAVIEY-CQLALAKYSS--------INDDNAPKYSRPHFSL----FIDRLEI 286 Query: 288 LDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDY- 346 L + T + + D+LE+L+ + + + +L+ + Sbjct: 287 LLASPLFTESERNNVL-DILETLAVSGVVLMISACRNDFYPQVVSHPSLMAGKANGSHFD 345 Query: 347 LLHGDDKSLNRASELLGEIVQ----SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 402 L L + L P+ E + S+ + L L Sbjct: 346 LSAPTRAELMQMIRLPANAANLTWTLDPDTAMPLDE------ILCSEAASNPDALPMLQY 399 Query: 403 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 455 + ++ + NN ++ ++ + + + +N + E + L +L Sbjct: 400 TLQSLYLNKDDNNQLLVSVYHSLGGIEGAIGKNAEEVLNQLNNSERAALPKIL 452 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 P +R E V P +I+ +G + L DLL + G V SR +L++ VW Sbjct: 129 DDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQLLEQVWGND 188 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + VV I LR L D D P IATV GYK + Sbjct: 189 FYGDERVVDVHIRNLRAELGD-DATDPHLIATVRGVGYKFI 228 >UniRef50_C1F5C9 Putative transcriptional regulatory protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F5C9_ACIC5 Length = 692 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 75/520 (14%), Positives = 167/520 (32%), Gaps = 48/520 (9%) Query: 2 QQP-VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 Q+P V +L +++RN + + +++DLL + SG +++R+++ +W Sbjct: 4 QEPTVFSFAAYLYDAENRRLTRNQVPIRINRQMLDLLDLLVRSSGRLVTREQIQKTLWPG 63 Query: 61 SIV--TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYS---------- 108 + + +T +++ LR L DN P YI +VP+ GY+L+ P+ Sbjct: 64 QFLDNSEKRITNAVARLRHILGDN-SSRPRYIESVPRTGYRLIAPIRVVELARGARPAPA 122 Query: 109 ------------EEEGEEIMLSSPPPIPEAVPATDSPS------HSLNIQNTATPPEQSP 150 E E++ +P + DSPS PP + Sbjct: 123 ALLPPAVETAVPAEGLPEVLPDAPSALSGTTATADSPSLSEDREAQTRSAGLLQPPGSAS 182 Query: 151 VKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNS 210 + G+ + L ++ RL K R P +I + + + Sbjct: 183 APISGLPRALGRRGVFYAAGVLLLLAGMLAMAPRL---KRRPAAAPAEITLGIAPFQASG 239 Query: 211 W-----SSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQR 265 + ++L + L + S + ++ + ++ L + + Sbjct: 240 PGAASLAQSFRLDLTDTLSQLPHLDVR-ASNSLDLLNLDRSTFRAQATHLGLDVLILGSF 298 Query: 266 QYRAQQCFMSIKLV--DNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQ 323 + +C + ++LV ++ ++ ++ ++ + + + ++L Sbjct: 299 TLQNNECHVQLELVRGNDLSHIASFNRT--VSRYELADLRTMIQDEVYRSLKLSPVSGGL 356 Query: 324 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 383 T + +A + SL A E + P F A A +A Sbjct: 357 PTTPIDGTSNPLAYDAYLRAQYHFSQLTGNSLVLAVAEYNEAIADDPNFVDAYAGQARAY 416 Query: 384 IVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK--GKTDESYQAIN 441 I + E + L + L + + + ++ + Sbjct: 417 IFLVQNDRIGESEGYTLARQ-AARHALALDAHTAEAHADLGFIYFLQSWNLKAGERELRQ 475 Query: 442 TGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 481 + L +Y +G EA A + P Sbjct: 476 AISANPDDPFYHQGLALIYSDEGRFHEAEAQINQALAVDP 515 >UniRef50_B0SVQ0 Transcriptional regulator, winged helix family n=1 Tax=Caulobacter sp. K31 RepID=B0SVQ0_CAUSK Length = 954 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 98/286 (34%), Gaps = 27/286 (9%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + G +L+ P ++R G + + R +++L+ G VL+ +L++ W Sbjct: 14 DESQAAFGPYLLAPGRRLLTRQGVPVAVGARALEILIALLSEHGRVLTHRQLVERAWAGL 73 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V + ++S LRK+L D E YI V RGY + PV W E + P Sbjct: 74 TVEESNLRVAVSGLRKTLGD-GEGGARYIENVVGRGYCFVAPVRWLEAEPADASPSIVPA 132 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 + P+ + + + + + V +V L Sbjct: 133 KLRGGSTRLPIPAARVIGRENVVEKLVAALGDR----------------ALVTVVGAGGL 176 Query: 182 DTRLPMSKSRILLNPRD-IDINMVNKSCNSWSSPYQLSYAIGVG---------DLVATSL 231 + L R ++ V+ S + + + A+ +G + + T L Sbjct: 177 GKTTVAALVAQALKTRAGVEAVFVDLSATADEAALTKAVAVALGLDGPGRDLEEAILTCL 236 Query: 232 NTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 +V D + ++ ++ L+ R + + ++ Sbjct: 237 ANHRVLLVLDGCEHVVEAVAAFCDRLTRRLDLYRVLATSREALRVE 282 >UniRef50_B2TAW9 Transcriptional regulator, winged helix family n=7 Tax=Burkholderia RepID=B2TAW9_BURPP Length = 1014 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 4/124 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 ++ ++ +G + + + + R+G L L R D+L +G ++++DEL++ VW Sbjct: 33 LENDMIELGRFQIDLEMRTVRRDGEALHLGSRAFDILAVIVSAAGRLVTKDELMNAVWPN 92 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 ++V + + +S LRK L + I TVP RGY+L+ + P Sbjct: 93 TVVEENNIQVHLSALRKILGADRH----LILTVPGRGYQLVHRQQPAPVRPASRVCAGRP 148 Query: 121 PPIP 124 P P Sbjct: 149 LPSP 152 >UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA75_KANKD Length = 741 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 106/272 (38%), Gaps = 5/272 (1%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 +++G WLV P N + + +EP +D+LV+F Q+ +V+SR ELI+ VW +V Sbjct: 3 KTIKMGSWLVFPDRNSLIFQEEEHNIEPLAMDVLVYFTQNPQKVVSRSELIEAVWSGRVV 62 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 +H V + I++LR+ L + S YI T+ K+GY+L+ V +E Sbjct: 63 GDHSVYRIINKLRQIL--ARDPSREYIKTIRKKGYQLVCDVSVSVSGLLKESFTEEVNDN 120 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 + S Q+ + K + + W LL + + L Sbjct: 121 EHERLSESGLLSSDKSQHGVMVSKGKLTKRGLWRSSIFWGLILLIVSVVGFLTVKLYFYY 180 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKI 243 + L D I + S + + SY GV D + + ++ Sbjct: 181 SMTSYSRSTPLITLDGAIRDPSFSPDGQFIAF--SYRGGVQDDWDIYVESLVDGRLYQIT 238 Query: 244 NYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMS 275 + DE S + V +Y Q+C + Sbjct: 239 DDITDE-LSPSWSPDGRKVAILRYDNQRCMID 269 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+ ++ + + ++ G Q++L + +LL+F A H G V +++EL VW Sbjct: 125 QEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAAVWNGD 184 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + VT + +R LKD P YI TV GYK + Sbjct: 185 GFDSRTVTVHVKNVRHKLKD-GTKHPKYIETVWGVGYKFI 223 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT- 64 + +G+ +V P +++ G + L + +LL+ FA+H G SRDEL+D VW Sbjct: 140 IELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDELLDEVWGYQYSGY 199 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 +H V I+ LR + + D P Y+ TV GY+ Sbjct: 200 SHTVNTHINRLRNKI-EPDPSEPRYVKTVWGVGYRF 234 >UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n=3 Tax=Burkholderia cenocepacia RepID=B1KAJ7_BURCC Length = 493 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 97/279 (34%), Gaps = 36/279 (12%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G V S + R+G+ + + R D+L +G ++++DEL+ VW ++V + Sbjct: 3 LGTLEVDLSTRSLRRDGKAIHVGSRAFDVLAVLLSAAGRLVTKDELMAAVWPGTVVEENN 62 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 + IS LRK L + I TVP RGY+L ++ Sbjct: 63 LQVHISALRKLLGPQRD----LIVTVPGRGYQL----------------------TQKSA 96 Query: 128 PATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPM 187 P+ + + Q + P + + R + L + I + A T + Sbjct: 97 PSANLTPATPLRQGDSDIPRRHGALTGRDSLVSNIAAILDTTHILTLVGAGGVGKTSAAI 156 Query: 188 SKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVG----------DLVATSLNTFSTF 237 + ++ R V S + A G D + +L T Sbjct: 157 EVAHAAVSGRFDITRFVALSDAASPEAVLQKIATAFGLSIRDDRSAVDALVAALPRDRTL 216 Query: 238 MVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSI 276 +V D + ID + ++ + N R + + + Sbjct: 217 LVLDNAEHVIDAVARLVDSVCMRLGNLRVLVTSREPLRV 255 >UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseudomonas fluorescens RepID=Q3KEV5_PSEPF Length = 928 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 + G + + P + + L L R +D+L+ H+GEV+S+ +LI VW S+V Sbjct: 7 QAIGFGPYRIHPGQRLVLEGDQPLRLGRRAMDILLILLAHAGEVVSKQQLIAGVWPDSVV 66 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + + ++ LRK+L D + YI TV +RGY + PV+ S E+ + Sbjct: 67 EDINLRVHMAALRKALGD-GQAGQRYIVTVAQRGYSFVAPVVLQSIEQRPTTANLGRHNL 125 Query: 124 P 124 P Sbjct: 126 P 126 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Query: 11 WLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI-VTNHVVT 69 LV + Q+ +GR + L R DLL A H G V SRDEL++ VW + + Sbjct: 144 LLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGYDFEGGHRTID 203 Query: 70 QSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + +LR+ L + D PVY+ TV GYK P Sbjct: 204 VHVRKLREKL-EPDPTRPVYVLTVWGVGYKFAGP 236 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + GE + + +++ +++TL + DLL++ A H G+V SR++L+D VW Sbjct: 133 DDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKLLDAVWGYQH 192 Query: 63 VT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 H V I+ LR L + D +P Y+ TV GYK Sbjct: 193 SGYEHTVNSHINRLRTKL-ETDTSNPKYVLTVWGVGYKF 230 >UniRef50_A3D2S0 Transcriptional regulator, CadC n=3 Tax=Shewanella RepID=A3D2S0_SHEB5 Length = 1067 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 86/463 (18%), Positives = 163/463 (35%), Gaps = 28/463 (6%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M GEW + PS N + + LEP+ +D+L+F Q +GEV+S DE++ + W Sbjct: 5 MSDSTFFFGEWQINPSANSLLLGKQVKQLEPKAMDVLLFLCQRAGEVVSSDEIVSHCWPG 64 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 ++ + + I++LR++L D+ D P+YI T+ KRGY+ + V + E S Sbjct: 65 VDTGDNPLHKIINQLRRALDDSATD-PIYIETIRKRGYRTLAEVRFPIGHEATACPQSWQ 123 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 P P + S + + S + ++ F L LG Sbjct: 124 GGSP--FPGLQAYSANYAEVFFGRSEQISTLLNRISQQIIYGRAFCLVLG---------- 171 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 S + P + N + S + G L+ + + ++ Sbjct: 172 PSGSGKSSLINAGVVPNLMKGGGYNGIGVASFSSLDFADVSK-GQLLTDLASAMLDWEIN 230 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCF--MSIKLVDNADGSTMLDK-----RYV 293 D + S TL++ V Q QC ++++ + +D+ Sbjct: 231 DTPVFEGM----SADTLAVQLVEDIQGVINQCTQALNVQPFTQPFFALFIDRLEVLLSSP 286 Query: 294 ITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDK 353 + + + + +LLE L+ + + +L +L+ + + L + Sbjct: 287 LFSDTERTVFVELLEQLATSKAVIIISACRNDFYPLLVGYPSLMAGKSRGAHFDLAPPTR 346 Query: 354 S-LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 412 + L + L S E A + + D + + + + Sbjct: 347 TELLQMIRLPAVAANLSWEVDSETAMPLDEMLCSDAASNPDALPMLQYTLQALYLQRSAD 406 Query: 413 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 455 L +Y GK E QAI+ D E + L +L Sbjct: 407 DKLLVSVYHALGGIEGAIGKNAE--QAISHLSDAEKASLPRIL 447 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 PV+R + + P + + G +L L P+ LL F +H V R++L+D VW V Sbjct: 159 PVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVWPREQLLDQVWGPDFV 218 Query: 64 TNH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + V I LR+ + + D P YI TV GY+ Sbjct: 219 GDSKTVDVHIRWLREKI-ETDPSHPQYILTVRGFGYRF 255 >UniRef50_Q1AYG8 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AYG8_RUBXD Length = 229 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 2/99 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS-IVT 64 V VG+ + P ++++ GR++ L PR LL A+ G V R L+ VW + Sbjct: 130 VYVGDLEIDPEQIRVTKGGREVMLSPREFKLLYTLARSPGRVFPRGTLLRQVWGEDEYID 189 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V + LR L D D P I TV GY+L+ P Sbjct: 190 ERTVNVYVQRLRNKLGD-DPSDPKLIETVRGFGYRLVRP 227 >UniRef50_B1Y588 Transcriptional regulator domain protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y588_LEPCP Length = 543 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 72/467 (15%), Positives = 141/467 (30%), Gaps = 76/467 (16%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 GE+ V P ++ G + L R D+L+ V++++EL++ VW +V Sbjct: 3 HRYTTGEFEVRPDERRVLLRGEPVPLGARAFDVLMCLIAQRERVVTKNELLEQVWPGMVV 62 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYS------EEEGEEIML 117 + +T +S LRK +AT+P RGY+ ++ + + Sbjct: 63 EENNLTVHVSALRKVFGAQA------VATIPGRGYRFVMALDETTGAPAVAPVPAPAPAS 116 Query: 118 SSPPPIPEAVPATDSPS-HSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALV 176 P + D PS L + N + +Q + SL + Sbjct: 117 VVGADGPTGLTLPDRPSIAVLPLDNLSGDAQQDLLIEGLSEDVITELSRFRSLFVIARNS 176 Query: 177 AFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFST 236 +FS + ++ +GV ++ SL Sbjct: 177 SFSFR------------------------GLAHGERDVRAIARELGVRYVLEGSLRRAGD 212 Query: 237 FMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITN 296 + ++++LVD + + ++Y Sbjct: 213 ----------------------------------RVRVAVQLVDAVSATQLWAEKYDRAV 238 Query: 297 GNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDK--- 353 + A+Q +L ++ A+ + ++ T +A D D + Sbjct: 239 DDLFALQEELTRAIVGAIAPQIEAGEFQKIRSARGRDLNAYTLAMRARDTARRADREGDA 298 Query: 354 -SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 412 + + A L E V+ P A A A V + AA+ + Sbjct: 299 TTRDEALRLAHEAVEIDPGCGVALATIAFVQWQQIWAGSAASPVDAAVAGLAAARRAIAL 358 Query: 413 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGK 458 + + KA+ L + + +L L LLG+ Sbjct: 359 DGSDHHAHLWKAMLQLFTHQHAAGLADLQRAHELNPNDALTLSLLGQ 405 >UniRef50_B9BNS9 Transcriptional regulator n=2 Tax=Burkholderia multivorans RepID=B9BNS9_9BURK Length = 963 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 97/263 (36%), Gaps = 23/263 (8%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 G++ + P+ ++ R + L R +++LV + +G+++ ++ L W + Sbjct: 5 DHCFTFGDFHLFPTQQRLLRGEIPIALGSRAMEILVVLIEQAGQIVDKETLTRRAWPTTF 64 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIW-YSEEEGEEIMLSSPP 121 V + I+ LR++L D SP+ IA VP RGY+ PV+ + Sbjct: 65 VEESNLRAQIAALRRALGDG--KSPLLIANVPGRGYRFTGPVVQNPAGASATVSRGRQQL 122 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 P + SP + + +K RF T GI +A ++ Sbjct: 123 PSADRRHNLPSPLARMIGRRRELATISGMLKEHRFVTIAGPG------GIGKTTIAIAAA 176 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGD-------LVATSLNTF 234 L S R + +ID + + P ++ +G+ L+ L + Sbjct: 177 YEML--SDYRDGIFFVEIDSLLDARLL-----PGAIASVVGLTQHSEASESLLVEHLCSK 229 Query: 235 STFMVHDKINYNIDEPSSSGKTL 257 +V D I+ + + L Sbjct: 230 HALIVLDNCERVIEATAMLAERL 252 >UniRef50_Q1IIR6 Transcriptional regulatory protein-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIR6_ACIBL Length = 469 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 21/197 (10%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RSIV 63 +R G + ++ + G ++ L + D+L GE+++RDEL + +W + V Sbjct: 9 RLRFGPYEADLHTRELWKFGTRVKLVGQPFDILELLISRPGELVTRDELRERLWPKETFV 68 Query: 64 T-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 NH + ++++LR L D+ +D P +I T+P+RGY+ + V EE P Sbjct: 69 DFNHGLNAAVNKLRDVLCDSADD-PKFIETLPRRGYRFISKVERGVEE-----------P 116 Query: 123 IPEAVPATDSPSHSLNIQNTATPPE-QSP---VKSKRFTTFWVWFFFLLSLGICVALVAF 178 IP A + +P A P +SP V+ T W W L L + +A +AF Sbjct: 117 IPVAETSPPTPLVVPTPAELAPEPRYESPAITVERSLGRTKWSWGAAAL-LMVVIAFIAF 175 Query: 179 SSLD--TRLPMSKSRIL 193 ++ +R P + Sbjct: 176 LAISKISREPSESEKKA 192 >UniRef50_D1TLZ3 Transcriptional regulator n=3 Tax=Burkholderia RepID=D1TLZ3_9BURK Length = 849 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 2/155 (1%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + G + + ++RNG ++ + R +D+L+ A+ GE++S +L D VWK S+V + Sbjct: 7 LTFGPFRIDFPQRVLTRNGDEVRIGSRALDILIVLAERGGELVSTRQLRDQVWKESVVDD 66 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP- 124 + +S LRK+L D +S YI RGY+L PV + ++P P Sbjct: 67 GALRVHVSTLRKALSDGQSES-RYIVNDNGRGYRLAAPVHSTRATQVTAPAPTAPTSTPD 125 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTF 159 E+ A + + + +R T Sbjct: 126 ESARALPVTLTRVIGREDVIDGLTDQLPERRLLTI 160 >UniRef50_B2TAV2 Transcriptional regulator, winged helix family n=4 Tax=Burkholderia RepID=B2TAV2_BURPP Length = 1010 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 95/262 (36%), Gaps = 22/262 (8%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++R+G V + ++ +G+ + R D+L +G ++S+ +++ VW +IV Sbjct: 1 MIRIGPLQVDLASRELFLDGQPARIGSRAFDILAVLIGANGALVSKSAMLEQVWPDTIVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + +S LRK L + S I TV RGY+L + + P Sbjct: 61 ENNLQVHMSALRKVLGE----SRNLIQTVSGRGYRL---------ASRDAPEEQTGKPAR 107 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGI-CVALVAFSSLDT 183 + P S L P S + + + + + V Sbjct: 108 DGAPDAAEDSACLRGIPNNLPASSSSLIGRDQAVSDIARALASTRHVTLVGSGGIGKTRM 167 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDL--------VATSLNTFS 235 + +++S + P + + + + ++ S ++++GV ++ L+ Sbjct: 168 AIEIARSLLAHFPEGVYLVPLACTVDANSVLAMFAHSVGVSAASGPLTLAHISKELSERR 227 Query: 236 TFMVHDKINYNIDEPSSSGKTL 257 V D + + + + L Sbjct: 228 VLFVLDNCEHVLGPAAELAEAL 249 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + +GE+ + S + I R G +L L R DLL F +H G+ SR++L+ +VW Sbjct: 164 EATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVWGWEF 223 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 VT ++ LR+ + + D P +ATV GY+L Sbjct: 224 GDLSTVTVTVRRLREKI-ETDPTHPTILATVWGVGYRL 260 >UniRef50_Q89ML1 Blr4182 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89ML1_BRAJA Length = 944 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 1/126 (0%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 V G + + Q+ ++G ++ + R D+L+ + +GE++S+ +L+ +VW+ +V Sbjct: 15 VFFGRFQLDKRRRQLLKDGVEVRIGSRGFDILIALTERAGELVSKRDLLFSVWRDVVVDE 74 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 V+ ++ LR++L + +D YI TV RGY + P+ PP Sbjct: 75 AVLRVHVASLRRALGE-GQDGARYIVTVSGRGYSFVAPIERKRGNGLASSGYVPPPRHGR 133 Query: 126 AVPATD 131 P+ Sbjct: 134 QFPSIP 139 >UniRef50_B2G959 Two-component response regulator n=13 Tax=Lactobacillus RepID=B2G959_LACRJ Length = 236 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 2/101 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 PV+ G W + +++N + + L P+ LL + H G+VL+RD+L++ VW Sbjct: 137 NDPVITTGSWEINQETYTVTKNDKTIALTPKEFQLLSYLVDHKGQVLNRDQLVNGVWGYD 196 Query: 62 IV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 I+ T+ +V IS LR L+D D P ++ TV GYK + Sbjct: 197 ILDTSRIVDIHISHLRDKLED-DSQHPTHLLTVRGFGYKFV 236 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + +R G + S + R L PR DLL A H G +R+ L+ VW Sbjct: 127 ESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWHGD 186 Query: 62 IVTNH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 T+ VT I LR+ ++DN P +I TV GYK Sbjct: 187 APTDQSTVTVCIRRLREKIEDN-PAQPRWIKTVWGIGYKFDPA 228 >UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47YD8_COLP3 Length = 712 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 90/204 (44%), Gaps = 13/204 (6%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + + + R+G + L P++ DLL+FF ++ ++++DEL+D VW ++VT Sbjct: 4 LEFNHITIDTQNQLLIRDGESIILAPKVYDLLIFFCKNPARIITKDELMDEVWTGTLVTE 63 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEE-GEEIMLSSPPPIP 124 + +++++ ++RK+L D D SP +I TVP++GY+++ + + E+ Sbjct: 64 NAISRTLVKVRKALGD-DPKSPQFIITVPRKGYRMVTEFNGSDKCQYNEQNTTEQTSTNK 122 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTR 184 E + S+N K+K+ T + F +L I FS Sbjct: 123 ENNNTITTSFSSVNS-----------TKNKKPKTLFSLFAISCTLLIVAVSFYFSIQQNI 171 Query: 185 LPMSKSRILLNPRDIDINMVNKSC 208 ++ ++ R+I Sbjct: 172 EIIATKQLKPLTREIADEQHPNVS 195 >UniRef50_Q39G50 Transcriptional regulator, winged helix family n=11 Tax=Burkholderia RepID=Q39G50_BURS3 Length = 877 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 93/256 (36%), Gaps = 19/256 (7%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++R+G V +I NG L + R D+L + GEV+S+DE++ VW ++V Sbjct: 1 MIRIGPLHVLLEKREIRLNGEPLRIGNRAFDVLELLIEAEGEVVSKDEIMRRVWAHTVVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + I+ LRK+L + I T RGY+L+ + E+E + +S P Sbjct: 61 ENNLQVQIATLRKALGADRGR----IVTAAGRGYRLVA---VHDEDETSALAQTSRCPAE 113 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTR 184 + S E L+ G A R Sbjct: 114 PRILFDPSMLVGRQCMIEEILAELER----------SRVVTLVGAGGIGKTRAAEETAAR 163 Query: 185 LPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIG--VGDLVATSLNTFSTFMVHDK 242 + + ++ + ++ +S +++ +G + + L ++ D Sbjct: 164 VAAQFEDGIAFVPLASVSNPRFALDALASALRMAAPVGGLSLEAIVAHLTNRRLLILLDN 223 Query: 243 INYNIDEPSSSGKTLS 258 + ID + T++ Sbjct: 224 CEHLIDAAAQIASTIT 239 >UniRef50_Q0HTC3 Lysine decarboxylase transcriptional regulator, CadC n=3 Tax=Alteromonadales RepID=Q0HTC3_SHESR Length = 1075 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M +GEW V PS N + + LEP+ +D+L+F Q++GEV+S DE++ + W Sbjct: 1 MSDSTFFLGEWQVNPSANSLLLGKQVKQLEPKAMDVLLFLCQNAGEVVSSDEIVSHCWPG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV----PVIWYSEEEGEEIM 116 ++ + + I++LR++L D+ +S YI T+ KRGY+ + PV + + Sbjct: 61 VDTGDNPLHKIINQLRRALGDSATES-RYIETIRKRGYRTLAEVRFPVGHEASATPQTWQ 119 Query: 117 LSSPPPIPEAVPAT 130 SP P +A A Sbjct: 120 GGSPFPGLQAYSAN 133 >UniRef50_Q98JB4 Adenylate cyclase n=1 Tax=Mesorhizobium loti RepID=Q98JB4_RHILO Length = 541 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 ++ + ++ R + +EP++ DLL + ++ V+S+D+L+D VW+ IV++ Sbjct: 30 FEDFALDGDRRELRRGNSLIAVEPQVFDLLQYLIRNRERVVSKDDLVDAVWQGRIVSDAT 89 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 + ++ R +L+DN E + T P+RG++ + V + E E P + Sbjct: 90 LASRVNAARSALQDNGEQQ-RLVRTFPRRGFRFVGTV--HEEAGAEATAPVEPAKPGLGI 146 Query: 128 PATDSPSHSLNIQNTATPPEQ 148 PA S L N + P+Q Sbjct: 147 PARPSI-AVLPFVNLSGDPDQ 166 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 3/103 (2%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK- 59 + + V+ G+ + +++ R R++ L P LL + QH G V SR++L+D VW Sbjct: 127 LAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWGS 186 Query: 60 RSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V V + LRK+L + +E P I TV GY V Sbjct: 187 DVYVEARTVDVHVGRLRKALNNKEERDP--IRTVRSAGYAFDV 227 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT-NHV 67 G+ + P +++ G+ + L + DLL A + G V SRD L+ VW V + Sbjct: 141 GDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSRDYLLHRVWGEDYVGVDRT 200 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V I LRK L I T+ GYK P Sbjct: 201 VDTHILRLRKKLG-GPGSPAERIVTLWGVGYKYERP 235 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-H 66 GE + +++R G+ ++L + LL A+++G V S + L D++W + + Sbjct: 139 FGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLFDSIWGKDSFGDIR 198 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V IS LRK + + D P YI TV GYK Sbjct: 199 TVMVHISNLRKKI-EQDPARPEYIITVRGMGYKF 231 >UniRef50_C9LLD5 DNA-binding response regulator ResD n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLD5_9FIRM Length = 234 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + + +G+ ++ P Q+ N + + L + DLL F A H EV S+++L + +W Sbjct: 131 MPEEGITIGDLIIRPKARQVILNDKNVLLTGKEFDLLYFLATHPNEVFSKEQLFEQIWSL 190 Query: 61 SIVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + VT I+ LR LK + I TV GY+ Sbjct: 191 DPIGEPATVTVHINRLRSKLKKVSGRAYERIETVWGSGYRF 231 >UniRef50_A5L7Z6 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L7Z6_9GAMM Length = 294 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 67/298 (22%), Positives = 110/298 (36%), Gaps = 43/298 (14%) Query: 10 EWLVTPSINQI--SRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 E + S I N + L P+ +L++ H+G +S+DEL W +IV++ Sbjct: 12 ELHINLSDRSIMNIENKTLIKLRPKPFRVLLYLHNHNGRCVSKDELFSECWNGAIVSDQS 71 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 +T +IS LRKSLK + TV K GY L S EE E L + + + Sbjct: 72 LTNTISTLRKSLKTIGIKKTK-LTTVSKAGYLL----EKISNEELPEPHLPTETSLTSEI 126 Query: 128 PATDSPSHSLN--IQNTATPPE----QSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 D+ + +++ + P E Q T ++ F+L L I Sbjct: 127 QEDDTIAAAIDGATSEVSVPVEVIDNQELANKPHETLVYLKKLFMLMLAI---------- 176 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLV-ATSLNTFSTFMVH 240 +S R N +I+ NM + ++ + Y L G+ DL + S++ Sbjct: 177 ---TSLSLIRGCYNTNNINKNMTQRLVSTENISYNLVDHTGMLDLENMEGIIRVSSY--K 231 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGN 298 D +ID V + + SI + A Y I N + Sbjct: 232 DCRARHID-----------IAVTKNSEGVFETDFSIVYKNKAHNYLH---SYKIKNDS 275 >UniRef50_Q05943 Transcriptional regulatory protein glnR n=102 Tax=Bacteria RepID=GLNR_STRCO Length = 267 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 7/147 (4%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV-T 64 +R G+ V + GR L L + +LL + AQH G V +R +L+ VW Sbjct: 127 IRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDYFGG 186 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 V + LR L + I TV GY+ + P E+GE+ S Sbjct: 187 TRTVDVHVRRLRAKLG---PEHESLIGTVRNVGYRFVTP---EKPEKGEKSDKSEKAERA 240 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPV 151 E ++P + N A S V Sbjct: 241 EKAERAETPGKAAAETNEAAGARSSKV 267 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + +G V ++ +GR + L P+ +LL+F +H G+VLSR +L+ VW Sbjct: 129 ESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHGVWDYH 188 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + + +V IS LR + + + +P YI TV GYKL P Sbjct: 189 FLGDTRIVDVHISHLRDKI-EQNARTPEYIMTVRNVGYKLHAP 230 >UniRef50_Q1MK13 Putative transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MK13_RHIL3 Length = 968 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 106/327 (32%), Gaps = 35/327 (10%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 G +++ P + R+ + + R +++L + GE++ + EL+ VW + V Sbjct: 4 YFFGPYVLVPERQSLMRDQTAVRVGSRALEILAALIERPGELVGKAELVSRVWPDTFVEE 63 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + +++ LR++L D D YIATV RGY+ + PV G+ + Sbjct: 64 SNLKVNVAALRRALGDAPGD-MQYIATVSGRGYRFVFPVRI----SGQSDTSVTATSQGA 118 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFW------VWFFFLLSLGICVALVAFS 179 + L + A + V+ R T L A Sbjct: 119 RTNNLPVSTTRLVGRGDAVDAIRCAVEVSRLLTIVGPGGVGKTRLALAIADQLTAAYHDG 178 Query: 180 SLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMV 239 L + + L P I M + ++ + VA +V Sbjct: 179 IWFVDLA-TVNDATLVPTAIATAMGLRVHSAN-----------IKAAVAAFATDREFMLV 226 Query: 240 HDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQ 299 D + I+ +S +TL A R + + + ++ Y + Sbjct: 227 LDNCEHVIEAVASCAETLLAAAARVRILATSREPL----------RVVGEQVYRLPP--L 274 Query: 300 LAIQNDLLESLSKALNQPWPQRMQETL 326 S ++AL P + E Sbjct: 275 ETPPEVSELSAAQALAFPAVELFVERA 301 >UniRef50_A5CFS8 Transcriptional regulator n=1 Tax=uncultured marine microorganism RepID=A5CFS8_9ZZZZ Length = 191 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 5/119 (4%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 +G W V P + + + LEP ++D+L+ A H G V++R++L+D VW V + Sbjct: 12 FELGPWTVIPERGLLRQGTVKEHLEPMVMDVLMVLASHQGSVVTREQLVDAVWDGRFVAD 71 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL----MVPVIWYSEEEGEEIMLSSP 120 + I+ LR L D+ + +P YI TVP+RGY+L +VP E+ G LS P Sbjct: 72 EAIVAKIATLRHKLGDHAK-NPTYIETVPRRGYRLMMTAVVPEAPEPEQRGSYKQLSRP 129 >UniRef50_Q2Y9M2 Transcriptional regulator, putative ATPase, winged helix family n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y9M2_NITMU Length = 1020 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 14/160 (8%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 MQ + + + + RN + + L P+ +L + A+ +G ++++DEL+D VW+R Sbjct: 1 MQTTYLEFHPFRLDKINAILWRNDQVVPLRPKNFAMLCYLAERAGTLVTKDELLDAVWQR 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 V V+ I+E+R++L D+ +P Y+ TVPKRGY+ + V E E ++ Sbjct: 61 RFVGEAVLKVCINEVRRALGDSV-SAPTYLLTVPKRGYRFIAQVTEVKSSEEVEEVI--- 116 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFW 160 P+ +D ++ ++ P R T W Sbjct: 117 CPVFPKNQRSDKVAYWID----------RPSPQARLLTIW 146 >UniRef50_Q12S47 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12S47_SHEDO Length = 762 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 87/215 (40%), Gaps = 9/215 (4%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 +G + + S NQI++N + + P+ + +L + A++ G+V+S D L++NVW+ ++V+ Sbjct: 5 YSIGGFFIDLSRNQITQNNQSQIIAPKALAVLTYLAENQGKVVSHDALLENVWQGTVVSP 64 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + + +SI++LRK+L D D VYI T K+GY L V W+ E + + + Sbjct: 65 NTLQRSIAQLRKALGD-DGKVQVYIKTHAKQGYSLECDVRWHDNIESPPLNAAQENIVDT 123 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSK--------RFTTFWVWFFFLLSLGICVALVA 177 + + + S K + + L +L + L Sbjct: 124 PTMSETNALAMSEDNTQSKAQHHSHDKDQSKSATTTDNAKPSKLTVMPLFTLFGIIILAY 183 Query: 178 FSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWS 212 R + + + +S Sbjct: 184 IGYQYLMPQPPSKLSFGELRLLTTTDNKEFASIYS 218 >UniRef50_A3SM14 Adenylate/guanylate cyclase/hydrolase, alpha/beta fold family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SM14_9RHOB Length = 420 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 81/198 (40%), Gaps = 11/198 (5%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V R + P+ + + R+G + +EP++ LL A+ +G++++++EL++ VW+ ++ Sbjct: 2 VYRFANCRLDPARHLLLRDGEPVHVEPQVFTLLQVLAERAGQLITKEELVETVWRGLAIS 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + ++ IS RK++ D + + TV G++L+ PV + G + S P Sbjct: 62 DATISARISAARKAIGDTGQAQA-ILKTVHGCGFRLVAPVST-DQAGGPDKAQSRPATAK 119 Query: 125 EA------VPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFW---VWFFFLLSLGICVAL 175 + D + P + W VW L +LG L Sbjct: 120 AQRHVLRFAQSADGSRIAHAQSGEGPPLLRLGHWLSNVELDWHCPVWQPLLTALGARHRL 179 Query: 176 VAFSSLDTRLPMSKSRIL 193 V + T L + Sbjct: 180 VRYDQRGTGLSSRELHAA 197 >UniRef50_Q12QP4 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12QP4_SHEDO Length = 1131 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 5/136 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + G+W + P N + LEP+ +D+L+ Q G+VLS D+++ W Sbjct: 1 MSDNMFFFGDWQINPESNSLRCGDVVKQLEPKAMDVLLLLCQSDGDVLSSDDIVKLCWGD 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIW----YSEEEGEEIM 116 + ++ V ++I++LRK+L D +P YI T+ KRGY+ + V + + E Sbjct: 61 IPMGDNPVHKAITQLRKALGDK-ATAPTYIETIRKRGYRTLASVEFPLGHQTHAEIASWQ 119 Query: 117 LSSPPPIPEAVPATDS 132 SP P A D+ Sbjct: 120 GESPFPGLRPYQAKDA 135 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 62/423 (14%), Positives = 126/423 (29%), Gaps = 67/423 (15%) Query: 105 IWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFF 164 W E +G+ +L+ P+ EAV + +P SL+ Q Q+ +K + + Sbjct: 554 RWRDEAKGKAYLLAEGKPLQEAVALSSNPLFSLDNQEQGF--IQTSIKRAQIKRWTRR-- 609 Query: 165 FLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQ----LSYA 220 +++ + L S L + + + L R N++ ++ + + Sbjct: 610 --ITISLLCLLSFTSVLMSLKSLDAEQQALEKRLEAENLLGFMVGDFADKLRSVGRMDLL 667 Query: 221 IGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSI-----AFVNQRQYRA------ 269 G+ + + K N N P +L +F + Q+ Sbjct: 668 DGISNKALEY-FSRDDANPESKSNANSLLPHWLSTSLGFTSSKASFEARFQHAQTLEAMG 726 Query: 270 ----QQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALN-QPWPQRM-- 322 + + + +LDK Y T +L + + L P+ Q Sbjct: 727 EVAYSRGKLDEAIKAFEAAKLLLDKLY--TEDKANPTLLKVLGANAFWLGQIPYAQSNWP 784 Query: 323 ------------QETLQKILPHR-GALLTNFYQAH--------DYLLHGDDKSLNRASEL 361 + L + P A + Y + + + NR+ L Sbjct: 785 LAEKYLTLYRDYSDALMTLTPDDVDAWVELSYALNSLGSLALKQLDYQAANTAFNRSLSL 844 Query: 362 LGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQ 421 + + P+ Y R+++A LA +N I NI L N + + Sbjct: 845 KTQALVKDPKNDYLRSDRA-----------DTLNWLAKINIPIGNIDEALTLYNEAQLE- 892 Query: 422 IKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 481 + ++ + L Y K + +++A A P Sbjct: 893 -LEMLLTKANDDANLMSRLSYIYTNQAQLLRY--QSKFEQATVKAKKSAQLLKKALKQDP 949 Query: 482 GAN 484 Sbjct: 950 SNE 952 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 124 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + G ++ +++ +G + L + DLL+F A+H G+V SR++L+ VW N Sbjct: 131 LSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWGYDYTGN 190 Query: 66 -HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V I LR L + + +I TV GYK V Sbjct: 191 ARTVDTHIKTLRMKL----KQASDFIQTVWGIGYKFEV 224 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 5/102 (4%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLT-LEPRLIDLLVFFAQHSGEVLSRDELIDNVWK 59 + + ++ + + ++ NG + L P+ DLL + Q+ +V SR++L++ VW Sbjct: 126 IDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLLEQVWG 185 Query: 60 RSIVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + V I LRK L D+ ++ TV GYK Sbjct: 186 YQFYGDERTVDVHIKRLRKKLASEDKP---FLYTVWGVGYKF 224 >UniRef50_B2SNG2 Transcriptional regulatory protein, C terminal n=8 Tax=Xanthomonas RepID=B2SNG2_XANOP Length = 772 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 18/194 (9%) Query: 13 VTPSINQISRNG--RQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQ 70 V + ++ G R L L P+ + +L+ A+ G+V++R++L+ VW ++ TN VVTQ Sbjct: 2 VDVASREVHAPGAERPLRLAPKSLAVLLALARQPGQVVTREQLLAEVWPDTLPTNDVVTQ 61 Query: 71 SISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE----- 125 ++++LRK+ + +I T+ K GY+LM V+W + G + P + Sbjct: 62 AVTQLRKAFASHGGQRSEHIETIAKTGYRLMAAVVWEAHAPGSTTLPQESPGVQSPELAQ 121 Query: 126 ----AVPATDSPSHSLNIQNTATPPEQSPV-------KSKRFTTFWVWFFFLLSLGICVA 174 AVPA+ S P + + W + V Sbjct: 122 ADDGAVPASVSVCEQSGAAAQPIRPASAQPGVPVAERPAAPLQRRWTALAVASVALLVVL 181 Query: 175 LVAFSSLDTRLPMS 188 +A + R+P S Sbjct: 182 DLAVQIMWRRVPAS 195 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V+ VG+ + + +++RNG+ ++L P+ +LLV+F + G VLSRD ++++VW Sbjct: 138 NRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVLSRDAILNHVWGYD 197 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + +V IS LR+ + + D P I TV GY+ + Sbjct: 198 YASETRIVDIHISHLREKI-EADPKQPRLIRTVRGFGYEFVGD 239 >UniRef50_D0WLW8 DNA-binding response regulator RegX3 n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WLW8_9ACTO Length = 262 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G V +++S +G ++ L DLL + + G V+ + EL++ VW ++ + + Sbjct: 138 GWLAVDLESSRVSVDGAEIPLAAMEFDLLAYLVANRGRVVEKRELLNKVWGGAVTGDGTL 197 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + LR+ + + D D+PVYI TV RGY+ E +P E Sbjct: 198 AVHVRRLRRRI-EPDPDNPVYICTVWGRGYRFREGGASLKAGETPTRAGEAPARAGE 253 >UniRef50_D1TLX7 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TLX7_9BURK Length = 476 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 11/193 (5%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 +++G + + + R+G+ L L R DLL A +G V+SR EL+ VW ++V + Sbjct: 1 MKIGRIELDMNARCVRRDGQDLRLGSRAFDLLATLASANGRVVSRSELMQTVWPGTVVED 60 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + +IS LRK+L D+ + I TV +RGY+L P + +SP P+P Sbjct: 61 CNIDVNISALRKALGDDRD----LIVTVARRGYQL-APSRHIQPKLRTA---ASPRPLPR 112 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGI---CVALVAFSSLD 182 V ++ A Q + L+ I C A VAF L Sbjct: 113 RVGNLVGTDVAVAKAAEALVGSQVLTLTGTGGVGKSSLALELAYRIAPSCPATVAFVDLS 172 Query: 183 TRLPMSKSRILLN 195 + + + + Sbjct: 173 SAATIDEVLSAIE 185 >UniRef50_Q89GU0 Blr6255 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89GU0_BRAJA Length = 946 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 86/254 (33%), Gaps = 27/254 (10%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + G + + P + + G L + R +D+L+F A GEV+ + EL+ +W Sbjct: 6 EDSAISFGPFRLFPKSRLLEKEGSPLHVGGRALDILIFLAGRPGEVVDKRELVKRIWADV 65 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V + ++ LRK+L D + S Y+ VP RGY + L+ Sbjct: 66 NVDEGSLRFHVAALRKALGDTGK-SARYVVNVPGRGYSFVA-------------SLAQAA 111 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 P VP P SL +Q + ++ F + V Sbjct: 112 PPVAPVPLDIVPPRSLPVQLAKMVGREEVIEKISNGLSLYRFMTV------VGPGGIGKT 165 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGV-------GDLVATSLNTF 234 + + R + ++ ++ A+G+ + T L Sbjct: 166 AVAVTVGHRRSQDFGGRVFFVDFGPLRDASHIATTIASALGLTISAEDPTPALLTFLKAG 225 Query: 235 STFMVHDKINYNID 248 ++ D + +D Sbjct: 226 PALLIFDSCEHVLD 239 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+ V+ + + + +G+ LTL + +LL+ A+ G+V S+++L + VWK+ Sbjct: 140 QEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLYNRVWKQD 199 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + VT I +R+ L D P +I TV GYK + Sbjct: 200 DADDIRTVTVHIKNVRRKLGD-GSKHPRFIDTVWGIGYKFI 239 >UniRef50_Q5SMC3 Response regulator n=4 Tax=Deinococci RepID=Q5SMC3_THET8 Length = 223 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ R G V + G L L P ++LL+ FAQ G V +R EL++ VW Sbjct: 122 KEGRRRFGPLEVDLGGRRAYLEGEPLRLSPTEMNLLLVFAQAPGRVFTRGELLERVWGPE 181 Query: 62 I-VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + VV + LRK L+D D ++P +I TV GY+ + Sbjct: 182 FEGSERVVDAYVRLLRKKLRD-DPEAPRFIETVVGLGYRFLGD 223 >UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15PB9_PSEA6 Length = 756 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 96/208 (46%), Gaps = 17/208 (8%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G++ V NQI+ N TL P+ + +L + A+H G+V+S+++L++ VWK ++V+ + Sbjct: 7 IGDFFVNLPRNQITHNEHTQTLPPKALAVLTYLAKHQGDVVSQEDLLNQVWKDTVVSPNS 66 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEE---GEEIMLSSPPPIP 124 + + I++LRK+ D D + I T K+GY L + W ++ G+ + L PP Sbjct: 67 LQRCIAQLRKAFGD-DGKAQGLIKTHAKKGYSLEAAIRWEDHQKRNVGDSVTLDKSPPNQ 125 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTR 184 A T+ ++ +K ++ + +L I + + S Sbjct: 126 HAKLGTNKVV-------------KAGFSAKHIFVLSLFTVLVFALVISITSTLWPSSVHN 172 Query: 185 LPMSKSRILLNPRDIDINMVNKSCNSWS 212 + ++ + R + + +++S Sbjct: 173 PSPASPLLIDDIRLLTSTDNRELASAYS 200 >UniRef50_C6JFQ6 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFQ6_9FIRM Length = 139 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%) Query: 13 VTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-HVVTQS 71 + ++ R+ R++ L ++L AQ+ G V S++++ D VWK S + ++V Sbjct: 45 IDLKRREVVRDNRKIELTYTEFEILQLLAQNPGRVFSKEQIYDIVWKESYFGDYNIVMSH 104 Query: 72 ISELRKSLKDNDEDSPVYIATVPKRGYKL 100 IS +R+ ++D D +PVYI TV GYK Sbjct: 105 ISHIREKIED-DPGNPVYIQTVWGVGYKF 132 >UniRef50_A1TAL1 Transcriptional regulator, CadC n=7 Tax=Mycobacterium RepID=A1TAL1_MYCVP Length = 436 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 1/100 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V R ++++ ++ R + +EP++ D+L + G +S++EL D VW Sbjct: 33 HRRVWRWDDFVLDVGCYELRRGDTMIRVEPQVFDVLAQLVSNHGRFVSKEELFDTVWGGR 92 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 V +T I +R++L D D ++ YI TV RGY+ + Sbjct: 93 FVGEAALTSRIKAVRRALGD-DGEAQRYIRTVRGRGYQFV 131 >UniRef50_B9L1T3 Phosphate regulatory protein n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1T3_THERP Length = 253 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 1/108 (0%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V+ G ++ +++ GR++ L PR LL + +G V +R EL+D VW + +V Sbjct: 144 VLTAGTLVIFRDEHRVVYRGREVHLAPREFALLTALVERAGRVCTRQELLDLVWGQDVVD 203 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEG 112 V I +R++L + D I TV GY+ + + E G Sbjct: 204 LRNVDVHIHRIREALG-GEPDGSNLIRTVHGIGYRFVPELAAMDETNG 250 >UniRef50_Q988M4 Mll6677 protein n=1 Tax=Mesorhizobium loti RepID=Q988M4_RHILO Length = 168 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 1/141 (0%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + G +L+ P + + + L R + +L+ + GE++S+ EL+ VW V Sbjct: 29 IAFGPFLLFPKQFLLLEGDKPVPLGSRALGILIALLERPGELVSKQELMARVWPDVFVVP 88 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 +T IS LR+ L+D D +I +P RGY+ + V + + + P E Sbjct: 89 TNLTVHISALRRVLRD-GRDGNRFIINIPGRGYQFVASVHTPLQRKASLETMRPIVPALE 147 Query: 126 AVPATDSPSHSLNIQNTATPP 146 +PS P Sbjct: 148 ERLQIQAPSEYGAYGVPTAGP 168 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 3/101 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI- 62 V+R+G+ + P+ +++ R G L L + LL +H EVL+R ++D+VW + Sbjct: 154 TVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWDFAFD 213 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 T+++V Q + +R+ + + D P I TV GY+L P Sbjct: 214 GTSNIVDQYVRYVRRKI--DIPDGPSLIETVRGVGYRLRTP 252 >UniRef50_Q1IHU2 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IHU2_ACIBL Length = 323 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 10/169 (5%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RS 61 + + G + + ++ +NG +L L+ + +L +G+V++R+E+ +W + Sbjct: 47 ERRAKFGLYEANFASGELRKNGAKLKLQEQPFQVLALLLDRAGQVVTREEIQQKLWPADT 106 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 V +H + +I++LR L D +P +I T+P+RGY+ + PV W E + Sbjct: 107 FVDFDHSLNTAINKLRDVLGDT-ASNPRFIETLPRRGYRFIAPVEW------NEPSVIPS 159 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSL 169 P A + D + T PE P R T L+ L Sbjct: 160 GAAPSATESKDPSRQTEPSIATIAEPE-LPQADHRITRLLFGGLQLMYL 207 >UniRef50_A4C973 Putative transcriptional regulator n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C973_9GAMM Length = 713 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 14/208 (6%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 ++ G W + P ++ + + L+P LL +F ++ +RDEL ++VW + V + Sbjct: 7 LKFGPWSLEPHRCLLTSSDIEKELDPLSYKLLSYFLACGNKITTRDELAEHVWGQRYVDD 66 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + + ++ISELRK L D P +I T K+GY V + +E P + E Sbjct: 67 NAIYRAISELRKHLHHPDYTQP-FIKTHHKKGYSFTARVSAHHQE----------PLLNE 115 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 + + L A PE VK + V F L +C+ ++A+ ++ Sbjct: 116 VINDLPANIELLEQSVLANEPELVAVKKSSMQRYVVAGFAFL---LCIGVLAWGIFASQT 172 Query: 186 PMSKSRILLNPRDIDINMVNKSCNSWSS 213 + + L + + + S ++ S Sbjct: 173 MPTTQQAPLLTQAHGDDKLGDSIHNPSI 200 >UniRef50_B9XFI9 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XFI9_9BACT Length = 226 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI- 62 V G+ + + +++ + G+++ L + LL FFA G L+RD+++D VW I Sbjct: 128 TVFEFGDCKLDLAAHKLYQGGKEIELTTKEFRLLEFFATRPGRALTRDQILDGVWGNDIV 187 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 V + V + ++ LR + + + PV I T+ GY+ Sbjct: 188 VNDRSVDRCVTTLRAKI-ETNPHQPVLIQTIRDVGYRFE 225 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + GE + +++ G+ + L P+ +LL F A+H +V +R++L ++W+ V + Sbjct: 138 ISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQLFAHMWRDEYVND 197 Query: 66 -HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 +T I +LR+ + + D P YI TV GYK Sbjct: 198 TSTITVFIRKLREKI-ERDPAKPQYIQTVWGIGYKF 232 >UniRef50_C1F3P9 Transcriptional regulator, putative n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3P9_ACIC5 Length = 588 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66 + G + + + R +++ + PR +L + +H G ++S DE++D +W + V Sbjct: 3 QFGAFRLDAENQCLWRGSKRIAVRPRPFAVLEYLVEHPGRLISHDEILDALWPETFVQPQ 62 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 ++ + +LRK L D D P YI T+PKRGY+ + V YS + ++ Sbjct: 63 ILRTYMLDLRKVLGD-DAAEPKYIETLPKRGYQFVAAVSTYSPSAVKAADSAAET 116 >UniRef50_A4X1M5 Two component transcriptional regulator, winged helix family n=2 Tax=Salinispora RepID=A4X1M5_SALTO Length = 251 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 2/112 (1%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 P V +G + P+ +++ +GR ++L + LL FF H+ +SR++L+ VW S Sbjct: 140 DPPVELGGLRMEPATYEVTLHGRPVSLPLKEFRLLYFFMTHADRTVSREQLLSAVWDGST 199 Query: 63 V-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGE 113 +++ +T I LRK L+ E P I TV GY+ P Sbjct: 200 GESSNTLTVHIKRLRKRLEAEGEPQP-LIITVRGLGYRFTPPEQMEPSSTTP 250 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS-IV 63 VV G+ ++ ++ G +T LL + A+H G V +RD+L+D VW+ + V Sbjct: 131 VVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLLDAVWRETHYV 190 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 T V + +R+ +++N ED P Y+ TV GY+ VP Sbjct: 191 TPRSVDVYVRRIREKIEENPED-PRYLKTVRGAGYRFEVP 229 >UniRef50_C5D1G0 Transcriptional regulator, winged helix family n=1 Tax=Variovorax paradoxus S110 RepID=C5D1G0_VARPS Length = 961 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 102/261 (39%), Gaps = 25/261 (9%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 +V G + + + ++RNG L L R +D+L+ + V+S++EL+ W ++ Sbjct: 17 EIVSFGPFTLRVNERLLARNGVPLDLGGRAMDVLLALIARANAVVSKEELLAEAWPGVVI 76 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV-IWYSEEEGEEIMLSSPPP 122 ++ + I+ LR++L D +D Y++ + RGY + + ++E E + SP Sbjct: 77 SDGSLRYQITMLRQALGD-GQDGARYVSNIVGRGYCFVAKISRTFAEPEVQAQRDESP-- 133 Query: 123 IPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS-- 180 P +P L ++ + + RF T + + G+ VA + Sbjct: 134 ---VEPGLPAPPGLLVGRSGDLAAIAAQLAKGRFVT------LVGTGGVGKTTVAVRTGH 184 Query: 181 -LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGD---LVATSLNTFST 236 L + + L + + S + L ++ D + + L Sbjct: 185 DLLADFAGAVVFVDLAT------LTDPSLVPTAIASMLRLSVRSADPVPSLISYLRERRM 238 Query: 237 FMVHDKINYNIDEPSSSGKTL 257 +V D + I +S + + Sbjct: 239 LLVLDNCEHVIAAAASLAERI 259 >UniRef50_Q3Z7F8 Transcriptional regulator n=5 Tax=Dehalococcoides RepID=Q3Z7F8_DEHE1 Length = 223 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 5/102 (4%) Query: 1 MQQP-VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK 59 M +P ++R G+ ++ +++ +GR L L R +LL F AQ+ G V SR+ L++ VW Sbjct: 121 MSEPGIIRAGDLIIDTLGCEVTLSGRLLDLTFREFELLKFLAQNRGRVFSREALLNKVWG 180 Query: 60 RS-IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + V I+ LR ++D + ++ TV GY+ Sbjct: 181 YDYYGGDRTVDVHITRLRGKIED---QTHTFVETVRNIGYRF 219 >UniRef50_B7RJ24 Putative regulatory protein, possibly two-component response regulator n=1 Tax=Roseobacter sp. GAI101 RepID=B7RJ24_9RHOB Length = 521 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 78/517 (15%), Positives = 153/517 (29%), Gaps = 45/517 (8%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 R + + + GR +EPR LL H ++++DE+++NVW IV+ Sbjct: 2 RYRFDHFTLDIDRGILLEGGRDAPIEPRAFKLLALLVTHHDRIVTKDEIVENVWDGRIVS 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + I RK L D D Y+ T+ RG + + ++ E + P P Sbjct: 62 DAAIATVIKTTRKVLSD-DGVGQKYLRTIRGRGVRFVGTLMPSLAAEARKPETDQAQPAP 120 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTR 184 A+ L Q S + L L + F +T Sbjct: 121 -VQTASRPTIAILPFQMVGYSETFSAIADAIPAELISCLSRLRWLAVVSRGSTFRFRETE 179 Query: 185 LPMSKSRILLNPRDIDINMVNKSCN--------SWSSPYQLSYAIGVGDLVATSLNTFST 236 ++ L + +V + S + + ++ ++ T + Sbjct: 180 PDLATIHAALGAKYCLTGLVEIFGSVIAVSVELSDTRSQDVVWSERFSGTISDINETRND 239 Query: 237 FMVHDKINYNIDEPSSSGKTLSIAFVNQ------RQYRAQQCFMSIKLVDNADGSTMLDK 290 + H + P + K + Q + DN ++ +K Sbjct: 240 IVTHVISALELHVPLNEAKRARLRPPENLDAWSIYHLGLQHMY-RFNKTDNLIAASHFEK 298 Query: 291 RYVITNGNQLAIQNDLLESLSKAL---------NQPWPQRMQETLQKILPHRGALLTNFY 341 ++ A S A +R E ++ P Sbjct: 299 ATILDPEFARAHAARSFTSFQSAFLKYSTDAAEEASNTRRFAEKAVELDPIDPFANFTLG 358 Query: 342 QAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALN 401 +AH + D ++ + ++ SP F A+ + L L Sbjct: 359 RAHWLI--SDPEA---GMPWIDRAIELSPNF----AQGFYAHGWGDVMAGRGVEALQQLQ 409 Query: 402 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVY- 460 T I P L + ++ L + + G + ++ L+G + Sbjct: 410 TAISLSPLDPFLYA---MQSACGLAYLQMEDYENAVLWAEKGA---RAPGSHFLIGAIAA 463 Query: 461 ---EMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 494 ++ G +A T + RP A+ + F Sbjct: 464 MICKISGDEEKARRWAKTTKDRRPDASVEMFFAAFPF 500 >UniRef50_B4RU42 Transcriptional regulator n=2 Tax=Alteromonas macleodii RepID=B4RU42_ALTMD Length = 1092 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 69/117 (58%), Gaps = 2/117 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M+Q +G+W V S N +S+ + ++EP+ +D+L+ Q G V+S DE++ W Sbjct: 1 MKQQ-FYLGQWRVDVSSNTLSQGKTKKSIEPKAMDVLLLLCQQKGLVVSADEIVAQCWPN 59 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIML 117 + + ++ V ++I+ LR++L D +P YI T+ KRGY+++ V + +E+ + + Sbjct: 60 APIGDNPVHKAITNLRRALGDK-AAAPSYIETIRKRGYRVVAEVQFIDDEQSKAVEG 115 >UniRef50_B6A1A4 Transcriptional regulator, winged helix family n=4 Tax=Rhizobium RepID=B6A1A4_RHILW Length = 950 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 107/279 (38%), Gaps = 11/279 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 +++ V W V + ++ G + + R +++ Q +GE++++D+L+ VW Sbjct: 6 VERRVFEFRGWEVDLARRELRALGSAVPIGSRAFEIIETLVQSAGELVTKDDLMQRVWPG 65 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 +V ++ V +S +RK+ + + TV RGY+L+ + + E ++S Sbjct: 66 IVVEDNTVQVHMSAIRKAFGPD----RNMLKTVSGRGYRLLGDWMIRQDSSPAEPVMSER 121 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 E T+ P + + ++ L+ G V + Sbjct: 122 ARQTEYAFRTNIPVATSALVGREVAVQEVGD-----LISAFRVVTLIGPGGIGKTVLATE 176 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYA-IGVG-DLVATSLNTFSTFM 238 L +L + +L + ++ + ++ + L G +LVA ++ + Sbjct: 177 LARKLFPTLKGDVLFVELVSLSDPDLVPSTVAHILNLQLHSDGTSPELVARAVGDRRMLL 236 Query: 239 VHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 + D + ID ++ +TL N + + I+ Sbjct: 237 ILDNCEHMIDAAATMAETLVHLCPNVSVLATSRELLRIE 275 >UniRef50_UPI0001B518F4 two-component system response regulator n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B518F4 Length = 206 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 6/100 (6%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V VG + Q+ G+ + L P+ DLL A+ G V SR +++D VW Sbjct: 94 VRHVGPLGIDRRTRQVHLAGQPVALAPKEFDLLAHLARDPGAVCSRQQIMDQVWDPHFFG 153 Query: 65 -NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + ++ LR+ L D P +I T+ + G++L VP Sbjct: 154 PTRTLDVHVAALRRKLGD-----PAWIETIRRVGFRLRVP 188 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT-NH 66 V + P + S +G +L L PR DLL FFA+H G+V SR +L++ VW H Sbjct: 139 VAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGYEH 198 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V I+ LR + + D PV I TV RGYKL P Sbjct: 199 TVNTHINRLRAKI-EADPAEPVRILTVWGRGYKLAAP 234 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 +Q + + +++ G Q+ L R ++L A + G V SR++++D++W Sbjct: 133 EQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSREQIMDHLWGGE 192 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 I LR+ + + D +P YI TV GY+ Sbjct: 193 FFGEPRSADVHIQHLRQKI-EPDPKNPRYIQTVRGMGYRF 231 >UniRef50_Q2SHD7 Probable transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SHD7_HAHCH Length = 487 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 61/111 (54%), Gaps = 2/111 (1%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW-KRSIVT 64 +++GEW + N++ R + L ++ +L+ A++ G +SR+ LI VW + V Sbjct: 9 MQIGEWRINVETNRLYREAAEHQLSDKVCKVLLALAENPGRTVSRETLIQKVWNENEYVG 68 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEI 115 + +I +LRK+ D+ ++P YI T+PK+GY+L+ V ++I Sbjct: 69 EQALNTAIWQLRKAFNDS-SEAPEYIETIPKKGYRLLKEVSVIPYAPRQDI 118 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Query: 11 WLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-HVVT 69 + ++ + ++++L P +LL F A++ G+V SRD L+D +W + V Sbjct: 167 LEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDVLLDKLWGYDYYGDTRTVD 226 Query: 70 QSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 I LR +++ D +P YI TV +GYK P Sbjct: 227 VHIRRLRTKIEE-DPSNPKYIITVRGKGYKFRDP 259 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI- 62 V G+ + + RNG+ + L P+ DLL F ++G LSRD ++ VW Sbjct: 129 TVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWGYDSR 188 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 VT + + ++ LR + + D P + TV + GYK +P+ Sbjct: 189 VTPRSIDRFVNALRNKI-EPDPAEPRILKTVREFGYKFELPM 229 >UniRef50_B5HID4 Two-component system response regulator n=3 Tax=Streptomyces RepID=B5HID4_STRPR Length = 285 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 8/125 (6%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT-N 65 R G +V Q+ ++ L P+ DLL A+ G V +R ++ID VW Sbjct: 164 RPGGLVVDRRTRQVRLGAERVALTPKEFDLLALLAEDPGAVYTRRQIIDQVWDPHFHGPT 223 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEG--EEIMLSSPPPI 123 + ++ LR+ L D +I TV G++L V+ + E + PP+ Sbjct: 224 RTLDVHVATLRRKLGD-----ARWIETVRGVGFRLADHVLLPAPAGAGRPERVRDRTPPV 278 Query: 124 PEAVP 128 P+ V Sbjct: 279 PDRVA 283 >UniRef50_B1J1E8 Two component transcriptional regulator, LuxR family n=3 Tax=Pseudomonas putida RepID=B1J1E8_PSEPW Length = 330 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 10/155 (6%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++R+G V+ + +G+ + L R ++L + G V+ +DEL VW ++V Sbjct: 1 MIRLGNAQVSLERREAFVDGKPVPLGGRAFEVLATLIKAKGRVVGKDELFSEVWAGTVVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 ++ + IS LRK+ +P I TVP+RGY+L V V+ + L P Sbjct: 61 DNNLQVQISLLRKAFG-----APGLIQTVPRRGYRLAVDVVL----DLPCTALGRSPLKD 111 Query: 125 EAVPATDS-PSHSLNIQNTATPPEQSPVKSKRFTT 158 A S S+ + P ++ F + Sbjct: 112 AAEALVPLGDSASVPVLVVDDDPSVRKALARLFRS 146 >UniRef50_D1CH01 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CH01_THET1 Length = 238 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 10 EWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH-VV 68 + L+ P Q+ G+ L L LL +H+G+VL D +++ VW + V +H ++ Sbjct: 136 DLLLDPCSRQVYLRGKPLHLTSTEYRLLELLVRHAGQVLPHDLIMERVWGPTYVGDHQLL 195 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 I LR L D D + P YI T GY+ + Sbjct: 196 KVFIRRLRHKLGD-DPEQPRYIQTEWGMGYRFV 227 >UniRef50_B0UQ98 Transcriptional regulator domain protein n=4 Tax=Rhizobiales RepID=B0UQ98_METS4 Length = 510 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 12/141 (8%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 G + + + + R+G + L PR + +L +G +S++EL W V + Sbjct: 7 FGPFRLDTEMKLLLRDGAPVALGPRAVAVLQALVARAGAPVSKEELFRVAWPDLAVEDSN 66 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 +T I+ LR++L ED +I T+P+RGY+ + PV S PP+ Sbjct: 67 LTVQIAALRRAL-AGSEDGARWIETLPRRGYRYVGPVG----------AAPSMPPVMPRF 115 Query: 128 PATDSPSHSLNIQNTATPPEQ 148 P S L ++N + P + Sbjct: 116 PDRPSV-AVLPLRNLSGDPAE 135 >UniRef50_A4JSN6 Transcriptional regulator, winged helix family n=5 Tax=Burkholderia RepID=A4JSN6_BURVG Length = 1032 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 100/288 (34%), Gaps = 20/288 (6%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++++G V I R+G L + R +D+L + SG V+S+D+++D VW IV Sbjct: 1 MIQIGTLSVDFEQRDIRRHGASLRIGARALDILEVLHRASGSVVSKDDIMDAVWPGLIVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP-- 122 + + ++ LRK+L N + I TVP RGY L+ + + P Sbjct: 61 ENRLQVHVATLRKALGANRD----LIKTVPGRGYLLVASASAAAGPAPDVPEGGEPGQGM 116 Query: 123 ---------IPEAVPATDSPSHSLNIQN-TATPPEQSPVKSKRFTTFWVWFFFLLSL--- 169 + A + + + TPP + +++L Sbjct: 117 SAAAAPAGSVALVESAAPDLAALPDASHAVPTPPLVGRDAELAQIVAMLARTPVVTLVGA 176 Query: 170 -GICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVA 228 GI +A + R+L + + I + V Sbjct: 177 GGIGKTSLAAHVAHDARCHGRERVLFVELAAASTHDDMLIAIAAELGLDVDGIPAVECVG 236 Query: 229 TSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSI 276 + + +V D + +D + +TL+ + R + + I Sbjct: 237 AAFAESRSLLVLDNAEHIVDLVAKLVETLTSVAGSLRVLVTSREPLHI 284 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RS 61 + V+ + + P+ +++ L + P LL FF H V SR++L+++VW Sbjct: 129 EEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNV 188 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V + V I LRK+L+ D + TV GY+ Sbjct: 189 YVEDRTVDVHIRRLRKALEPGGHD--RMVQTVRGTGYRF 225 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-R 60 + P +R G ++ P + G ++L + + LL+ FA+H +V + ++L D +W Sbjct: 126 EGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDRIWNLD 185 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + V IS LR+ + + + P YI TV GY+ + Sbjct: 186 ATGYVETVKVHISHLRRKI-ERTPNRPEYIQTVRGFGYRFVP 226 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V+ G + + + +G +L L R DLLVF +H G SR EL++ VW S Sbjct: 133 EGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQVWGWS 192 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYK 99 + VT + LR+ + + D PV I TV GY+ Sbjct: 193 FGDHSTVTVHMRRLREKV-EPDPARPVRINTVWGVGYR 229 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-H 66 VG+ ++ P + GR L L R DLL A+H G V +R EL+D VW + Sbjct: 133 VGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDLVWGYDFAGDER 192 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V + +R+ L++ D P Y+ T GY L Sbjct: 193 TVDVHVRRIREKLEE-DPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_C9Y6H6 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6H6_9BURK Length = 526 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 7/192 (3%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 G +++ ++ +G+ + + R D+L H+GE++++ +L D VW +V + Sbjct: 17 FGNFVLQRHERRLLCDGQTVMVGARAFDVLCVLVDHAGELVTKKKLFDLVWPGLVVEENN 76 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 + +S LR+ L + IATVP RGY+ + + E S Sbjct: 77 LQVHVSSLRRILGADA------IATVPGRGYRFTLRLAAV-PSAVETAQASKGKGRASDQ 129 Query: 128 PATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPM 187 A L N PEQ L + +F+ +T+ Sbjct: 130 QAYRRTIAVLPFVNLNADPEQEYFSDGLAEDIISHLTKSPWLLVVSRNSSFAYRNTKESN 189 Query: 188 SKSRILLNPRDI 199 L R + Sbjct: 190 QAVGSALRARYL 201 >UniRef50_C6XRJ0 Transcriptional regulator, CadC n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRJ0_HIRBI Length = 398 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V + GE+++ + I+ G L L P+ + L + G + S++EL++ +W T Sbjct: 10 VFKFGEFVLDRDLGTITFEGDDLKLRPKAYEFLSLLVEGRGRLFSKEELLETLWPHVFAT 69 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLS 118 + + +S R +L D ++ I T+PKRGY++ +PV ++ E + Sbjct: 70 EESLARVVSTCRCALGDEEK---TIIVTIPKRGYRIGLPVFTDKDDVAERQLSE 120 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 2/102 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M V+ G + + +S NG +TL + DLL + ++SG VL+R +LID VW Sbjct: 126 MSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGA 185 Query: 61 SIVTNH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 V + + + LR + + D +PV++ TV GYKL Sbjct: 186 DYVGDTKTLDVHVKRLRSKI-EADPANPVHLVTVRGLGYKLE 226 >UniRef50_A6U8S7 Transcriptional regulator, winged helix family n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6U8S7_SINMW Length = 922 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 93/260 (35%), Gaps = 18/260 (6%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M P G + + P ++ R+G +L + + LL+ + G ++S+ EL+ W Sbjct: 1 MSVPRFTFGPFELDPLRLELRRDGVKLRVGAKACRLLLALVERPGHIVSQKELLAAAWSG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 V + + I LRK+L + I TVP+ GY PV + P Sbjct: 61 LNVEDVNLRVHIVALRKALS-GVANGAFNITTVPREGYVFAGPVSV-----SAAPAIEMP 114 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 P VP S +L + A + + R T + + G+ +A ++ Sbjct: 115 ASPPARVPRQLS---TLFGRREALANLGDALAAHRIVTI------VGAGGMGKTALALAA 165 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 ++ + + +++ + + V + +L + +V Sbjct: 166 IEEHAGTECVFVDFSTSVSSLHVQGCIFEALELEGTPND---VAAHIVRALANKTILLVF 222 Query: 241 DKINYNIDEPSSSGKTLSIA 260 D + + E ++ L+ Sbjct: 223 DNCEHVVGEVAAMAARLTSR 242 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 4/102 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V+ VG+ + P ++ NG + L P+ ++L++ Q G V++RD+L++ VW Sbjct: 132 SEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDLMNVVWGFD 191 Query: 62 IV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + V +S LRK L+ V I ++ GYKL++ Sbjct: 192 YIGGQRTVDVHVSSLRKKLE---LGQSVQIESIRGVGYKLVM 230 >UniRef50_Q3KE15 Putative transcriptional regulator n=3 Tax=Proteobacteria RepID=Q3KE15_PSEPF Length = 959 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 88/247 (35%), Gaps = 11/247 (4%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 G + V P ++RNG + + R +DLL+ + G VLS+ +LID VW S+V Sbjct: 16 FIFGPFCVVPGKRLLTRNGVAVEIGGRALDLLIALLEQPGRVLSKYDLIDKVWPDSVVAE 75 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + ++ LR+ L D E+ YIAT GY + P+ + + Sbjct: 76 GSLRFHMTGLRRILGD-GEEQARYIATQVGVGYAFVAPLERKQTAVHPAPIATRATEGVC 134 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 ++P Q P + FT SL I VA + + Sbjct: 135 SLPPRARLIGREIDLQLVIDHMQQP---RLFTIVGPGGVGKTSLAIEVA----HRIAAQG 187 Query: 186 PMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINY 245 S + L + + + S P Q + V + L +V D + Sbjct: 188 YERVSFVDLAQVEDSALVPSALARSLDIPVQAEDPMFV---LLAHLREQRLMLVIDNCEH 244 Query: 246 NIDEPSS 252 ID S Sbjct: 245 LIDAVSI 251 >UniRef50_C7E4R8 Transcriptional regulator n=1 Tax=Pantoea stewartii subsp. stewartii DC283 RepID=C7E4R8_ERWST Length = 288 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 21/208 (10%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 +Q + ++ P++ + R+ L L + D+L + +S+DE + VW Sbjct: 7 KQGKIFFLDYTFIPALRTLQRDDTTLQLRKKQTDVLALLCEKYPSPVSQDEFLSEVWDGC 66 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 VT+ + Q I LR SLKD +S I T+PK GY+L W + E++ P Sbjct: 67 YVTSQSIAQMIRSLRISLKD---ESKKIIVTIPKLGYQLTAEPYWEASLSQPELL---PD 120 Query: 122 PIPEAVPATDSPS--------------HSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLL 167 + E PA + + P+ P++ ++ W + F + Sbjct: 121 TLNERTPAARKIELNNISYSSSTFINCQPTPMTVVSYAPQHKPMERNLTSSKW-FLFAVT 179 Query: 168 SLGICVALVAFSSLDTRLPMSKSRILLN 195 +L I +A VA + + + + + Sbjct: 180 TLSIILAAVAMGARGYAQGLFEEKKIFF 207 >UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=16 Tax=Firmicutes RepID=B7GFY6_ANOFW Length = 226 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 4/99 (4%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 +Q+ +VR G + V + + + ++G Q+ L PR LL Q+ G VL+RD ++D +W Sbjct: 127 IQEEIVRWGAFEVNRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDIILDRIWGY 186 Query: 61 SI-VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGY 98 V+ + ++ LRK + D + I TV GY Sbjct: 187 DADVSMKTIDATVKLLRKKIGD---EQQQLIKTVRGVGY 222 >UniRef50_A5ED47 Transcriptional regulator n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5ED47_BRASB Length = 972 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V GEW + ++ G + L R +++ + G+++++DEL+ VW + V Sbjct: 30 VFATGEWEIDLDRRELRARGGPVPLGGRAFEIMEVLIKSEGKLVTKDELLSQVWPGATVE 89 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + IS LRK+L + E + T+ RGY+L+ + + Sbjct: 90 ENTLQVHISALRKALGPDRE----MLKTISGRGYRLLGTWAPRASGAVLRTSPVHFHAVS 145 Query: 125 EAVPATDSPSHS 136 A T+ P + Sbjct: 146 GATFQTNLPEAT 157 >UniRef50_A2SGK5 ATPase-like protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SGK5_METPP Length = 977 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 6/162 (3%) Query: 1 MQQP---VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNV 57 M + ++R G++ + + + R+ + L L PR +L + G+++++D L+D V Sbjct: 1 MNESQPLLIRFGDFELDEANAMLKRHEQALDLPPRAFSVLCELVRRPGQLVTKDMLLDAV 60 Query: 58 WKRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV-PVIWYSEEEGEEIM 116 W V+ V+ ++ LR + D+D +P +I T +RGY+ + P Sbjct: 61 WGHHHVSESVLKSAVRTLRAAF-DDDARAPRFIETASRRGYRFIAVPGPERRPTSVARSN 119 Query: 117 LSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTT 158 S P+ EA PA S + ++ R Sbjct: 120 DGSAVPVVEA-PAVSGTSGGTRLVGRGAALDRLHAAWDRARA 160 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 2/99 (2%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + ++ G + + +++ +G+ + L P+ +LL F +H V S D+L+D +W + Sbjct: 129 ETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDKLWDG-V 187 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 H V +S LR+ ++ N + P YI V GY+ Sbjct: 188 GDKHTVRVHLSRLREKIEAN-PNDPQYIVNVWGIGYRFE 225 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ + +G + S Q + + + L P+ +LL + G SRDEL++ +W Sbjct: 132 REESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFSRDELLERIWGYE 191 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + V I LR LKD D I TV GY+ Sbjct: 192 YYGDTRTVDVHIRHLRAKLKD-DPTVSDAIETVRGVGYRF 230 >UniRef50_UPI00019732E7 DNA-binding response regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI00019732E7 Length = 236 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV--TNH 66 G ++ P Q+S NG +L L + DLL A H G+VLSR++L VW + V + Sbjct: 137 GNLVIDPIGRQVSLNGEELQLTRKEFDLLFCLASHVGQVLSREQLYQMVWDENSVYNVDE 196 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V I LRK L YI V GY+ Sbjct: 197 TVKAHIKSLRKKL---TPSGAEYIKNVWGIGYRFSTD 230 >UniRef50_Q3KEV6 Putative transcriptional regulator n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KEV6_PSEPF Length = 490 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V+R G + I RQL + R +D+L + +G+V+S+++LI VW S+V Sbjct: 11 SVLRFGPYAFHLRQRLILEGDRQLRMGGRALDILQVLVERAGQVVSKEQLIALVWPTSVV 70 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 + I+ LR++L + E+ YI VP+RGY + PV S + L +P Sbjct: 71 EEINLRVHIAALRRALGE-GENGQRYIVNVPQRGYSFVAPVQGDSVTQVVFENLQAPQH 128 >UniRef50_Q12RS3 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12RS3_SHEDO Length = 678 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 59/310 (19%), Positives = 109/310 (35%), Gaps = 46/310 (14%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + + ++ I+RN + L +EP+L LLV+ Q+ +SRDELI+ VW+ V+ Sbjct: 2 IFVFDNIEINTALVTITRNRQALEIEPKLFSLLVYLCQNPNRAISRDELINTVWENRFVS 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + ++I +LRK ++D D P YI TV K GY+L V + + + Sbjct: 62 EAAINRAIGQLRKHIED-DTSHPKYIRTVSKVGYRLDAVVQHIPQAQFQWE--------- 111 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTR 184 + + + + F+ + I + LV F+ Sbjct: 112 ----------------------AKKQLSNNKRNISPKAVIFVFFVLISIILVLFTVPQLD 149 Query: 185 LPMSKSRILLN-----PRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMV 239 P + + ++ +I+ + + L +LN+ + Sbjct: 150 TPQLSTSVSIDNISPITTSSNISFNPHFDTANNELLYLFKEHSRSSAQIKALNSQHKTLE 209 Query: 240 HDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQ 299 + NY + S T + R +Q I ++ T Sbjct: 210 LSQDNYYYTDVVSFDDT---RVIASRLTDLKQRDCEIVTINKITHET------QKITDCG 260 Query: 300 LAIQNDLLES 309 +I NDLL Sbjct: 261 KSIINDLLFD 270 >UniRef50_UPI0001C164FC Two component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C164FC Length = 259 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q + + + P +++ N + L L ++L F A H G+ SR +LI +W Sbjct: 153 QSQRLIFKQLAINPEGREVTLNDKPLALTALEFNILHFLACHPGQAWSRPQLIQKIWGCD 212 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V + VV I +LRK + + D +P +I TV GYK P Sbjct: 213 YVGDGRVVDVHIGQLRKKM-EVDSSTPEFIKTVRGYGYKFESP 254 >UniRef50_UPI0001AEBD7C two component transcriptional regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEBD7C Length = 250 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 3/104 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + +G + + ++ NG+ LTL R LL +F +H +V SR++L+ VW + Sbjct: 137 SEERIEIGPLKIDQRFHSVTLNGQVLTLTAREFALLDYFCRHPNQVFSRNQLLSEVWGYN 196 Query: 62 IVT-NHVVTQSISELRKSLK--DNDEDSPVYIATVPKRGYKLMV 102 H V I+ LR L ++ E+ + TV GYKL V Sbjct: 197 HEGYEHTVNTHINRLRTKLDKINSIENGGQLVETVWGVGYKLNV 240 >UniRef50_B1KFP5 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KFP5_SHEWM Length = 725 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 1/114 (0%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 +++ R+ + +V P+ I +G L +E R + +L+ H+GE +SRD L+D VW Sbjct: 2 LKRTRYRLADKVVDPAQCTILSDGNLLKVELRAMQVLLCLINHAGEPVSRDMLLDEVWSG 61 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEE 114 V+++ + + I LR L DN + SP +I T+PK GY L+ P+ E E Sbjct: 62 GEVSDNAINRIIGILRNQLGDNAK-SPEFIKTLPKVGYVLIAPITLVKEVTKHE 114 >UniRef50_B7GTW3 Response regulator receiver protein n=6 Tax=Bifidobacteriaceae RepID=B7GTW3_BIFLI Length = 266 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 4/104 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 ++ +R G+ +V + S +GR + L + +LL + QH G V +R +L+ VW Sbjct: 133 VEDGQIRSGDLIVDTNGYTASLHGRPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGY 192 Query: 61 S-IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V I LR L E I TV GY+ P Sbjct: 193 DYYGGTRTVDVHIRRLRAKLGGEYEH---LIGTVRNVGYRFDPP 233 >UniRef50_UPI0001AF360D LuxR family transcriptional regulator n=3 Tax=Pseudomonas syringae group RepID=UPI0001AF360D Length = 939 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 96/263 (36%), Gaps = 29/263 (11%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + G + + P + ++ + + L R + LLV FA GE+L + EL+ W R+ Sbjct: 22 NHEAIHFGSFTLLPREYLLLKDSQPVPLGSRAMALLVAFATRPGELLEKAELLTLAWPRA 81 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 +V + I LR++L D + YI TVP RGY+ + PV + + Sbjct: 82 VVEECNLRAQIVALRRALNDEE----NYIVTVPGRGYRFIAPV----------SVQPAIR 127 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 P+P A P+ L + E S + Sbjct: 128 PVPAPTSADTLPAVPLVNRKVLGRGELIEQLSTLTLARRLLTLS--------GPGGVGKT 179 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVAT-------SLNTF 234 L ++ S + + + + ++++A+G+ SL + Sbjct: 180 TVALALADSLAAQSGLSVAFVDLTPVNGTQPILGRIAFALGLSAESEHPLHNMPPSLVSR 239 Query: 235 STFMVHDKINYNIDEPSSSGKTL 257 +V D + +DE +++ + L Sbjct: 240 PQLLVLDNCEHVLDETAAAVEAL 262 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + ++ + E + + +++ +++ L PR D+L A++ G V S +++ + VWK Sbjct: 131 INDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKIYERVWKE 190 Query: 61 SIV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYK 99 +++ V I +LR+ +++N P Y+ TV GYK Sbjct: 191 EFFKSDNTVMVHIRKLREKIEEN-PRKPKYVKTVWGVGYK 229 >UniRef50_B1KPW9 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KPW9_SHEWM Length = 693 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 68/116 (58%), Gaps = 1/116 (0%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + LV P+ N++ +G+ + +EP+++ +L F +H G+V+SR+ + ++W ++V Sbjct: 2 TFQFANCLVFPAHNKLEIDGQSIKIEPKIMQVLCFLLRHQGQVVSREFIAQSLWPDTVVG 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 V+T++I ELRK L D+ SP +I T+ ++GY + P+ S EG L+ Sbjct: 62 LDVITRAIFELRKILNDS-AQSPQFIETIARKGYCFIYPLEQKSVAEGSVDCLAES 116 >UniRef50_C6IXU0 Transcriptional regulator domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXU0_9BACL Length = 265 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI-VTNH 66 + + + R G ++ L +LL+ +H G VLSR+EL+ VW + ++ Sbjct: 171 FKDLWIDRKKMTVYRGGIKIELTKTEFELLIKLLEHEGTVLSREELLSEVWGTTFLGGSN 230 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 VV I LRK L DN P YI TV GY+L Sbjct: 231 VVDVHIKSLRKKLGDN-ASRPTYITTVRGVGYRL 263 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 2/98 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V+ G + + +S NG +TL + DLL + ++SG VL+R +LID VW V Sbjct: 131 VLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVG 190 Query: 65 NH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + + + LR +++ D +PV++ TV GYKL Sbjct: 191 DTKTLDVHVKRLRSKIEE-DPANPVHLVTVRGLGYKLE 227 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + G+ + +++ G++LTL + + +L F ++ V ++ ++ D+VW Sbjct: 132 ENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQIYDSVWGEE 191 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 +++ + VT + LR ++D D ++P I TV GYKL Sbjct: 192 FLSDYNTVTVHMRRLRSKIED-DPNNPKLIETVWGIGYKLTGD 233 >UniRef50_A9AVR8 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A9AVR8_HERA2 Length = 248 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 P+VR+G+ + +++ G + L P +LL F A +SG+V R+ L VW V Sbjct: 146 PIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDREVLFREVWGYEYV 205 Query: 64 T-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 ++V + LR+ +++ P I TV GYKL Sbjct: 206 GQTNLVDVCVRRLREKIEEQ-PSKPRRILTVRGVGYKL 242 >UniRef50_B1KA17 Transcriptional regulator, winged helix family n=8 Tax=Burkholderia RepID=B1KA17_BURCC Length = 973 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 54/273 (19%), Positives = 102/273 (37%), Gaps = 9/273 (3%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++++G V I R+G L + R +D+L + SG V+S+D+++D VW IV Sbjct: 1 MIQIGTLSVDFEQRDIRRHGASLRIGARALDILEVLHRASGSVVSKDDIMDAVWPGLIVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIW-YSEEEGEEIMLSSPPPI 123 + + ++ LRK+L + + I TVP RGY L+ E + PP Sbjct: 61 ENRLQVHVATLRKALGASRD----LIKTVPGRGYLLVASASPGPDLVPAGEAPAVAVPPA 116 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 A+P + S + Q +R + GI +A Sbjct: 117 VAALPDACALSLLPPLVGRDAEIAQIVDMLERTPVITLVGAG----GIGKTSLAMRVAHG 172 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKI 243 ++ R+L + + + + D + + T +V D Sbjct: 173 VRSRAQERVLFVELARASTRDDMLIALAAELGLDTPGVPAIDRIGDAFATSRCLLVLDNA 232 Query: 244 NYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSI 276 + +D +S +TL+ + + R + + I Sbjct: 233 EHIVDLVASLVETLTSSAGSLRVLVTSREPLHI 265 >UniRef50_D1CC84 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CC84_THET1 Length = 233 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 2/100 (2%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 Q V R G + S Q++ N ++ L P +L Q++G+V++ L++ VW Sbjct: 130 QSVFRCGPLTINFSRRQVTLNDEEVKLTPTEYSILEQLVQNAGKVMTHQMLLNRVWGPEY 189 Query: 63 VTNH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + + I LR+ L D + P +I T GY+ + Sbjct: 190 TEENEYLRVYIGRLRRKL-DPGPNGPKFIVTEQGVGYRFV 228 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 3/103 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + +R G+ + ++ R GRQ+ L R LL + +H +VLSR +++ VW + Sbjct: 123 ESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWDYA 182 Query: 62 I-VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 ++VV + LR+ L + P I TV GY+ P Sbjct: 183 FDPGSNVVDVYVRYLRRKL--DRPGEPSLITTVRGAGYRFDPP 223 >UniRef50_A7HMZ4 Two component transcriptional regulator, winged helix family n=7 Tax=Thermotogaceae RepID=A7HMZ4_FERNB Length = 229 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + V+R G+ + PS + +G+++ L + ++L AQ V SR+E+++ +W Sbjct: 123 KEVIRYGKLEIYPSDYVVLYDGQKIDLTAKEFEILKLLAQRPDRVYSREEILETIWTDEY 182 Query: 63 -VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEE 110 V + VV I+ LRK L + +I TV GYK S E Sbjct: 183 DVFDRVVDVHINSLRKKLGKD------WIITVRGVGYKFSKKGDAQSSE 225 >UniRef50_C5AMC0 Transcriptional regulator, winged helix family protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5AMC0_BURGB Length = 956 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 19/153 (12%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G + + ++ NG + L R +L A G ++++D L+D +W + V + Sbjct: 14 LGRFEIDLVGRELRENGSAVRLGARAFAILEMLAAADGRLVTKDALLDAIWPDTFVEENT 73 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 + +S LR++L D + I TVP RGY+L+ ++ P A Sbjct: 74 LQVHLSALRRALGDQRD----CIMTVPGRGYRLV--------------RRAAAEPPRGAQ 115 Query: 128 PATDSPSHSLNIQNT-ATPPEQSPVKSKRFTTF 159 PA P H I T A + + R T Sbjct: 116 PAARLPRHPDVIGRTHAVAAVREALGQTRVLTL 148 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + +++ G + + ++ N ++ L P+ +LL A + V ++ L+D +W S Sbjct: 128 ENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKIWDSSF 187 Query: 63 VT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 ++ VT I LR+ + + D +P YI TV GYK Sbjct: 188 YGDDNTVTVHIRRLREKV-ETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteobacteria RepID=A8HY28_AZOC5 Length = 228 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 57/97 (58%), Gaps = 2/97 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V++VG + ++++R+G+++ L P+ +LLV+ A+H G VL+ +++ VW + + Sbjct: 131 VLKVGPLEIDRPRHRVTRDGQEIKLTPKEFELLVYLARHPGRVLTHRQILGAVWGPAHLD 190 Query: 65 N-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + + + +LR+ L + + +P I T P GY++ Sbjct: 191 DTQYLRVYVGQLRQRL-EVEPATPTLILTEPGIGYRM 226 >UniRef50_C7RJ06 Transcriptional regulator, putative ATPase, winged helix family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJ06_9PROT Length = 975 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 1/114 (0%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 VR + + + ++ R+G + L PR +L +H+G +L+ + L+D VW VT Sbjct: 18 RVRFDRFELDEANARLLRDGTAVALAPRPFAVLCALVRHAGSLLTTNALLDEVWGHQFVT 77 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLS 118 + V+ +ISELR L D+D P YI TV +RGY+ + + G + +S Sbjct: 78 DSVLRTAISELRTVL-DDDARKPRYIETVSRRGYRFVAAPSALAAAPGVQPSVS 130 >UniRef50_A8MLN3 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A8MLN3_ALKOO Length = 231 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G + ++ +N + L + L+ FF ++ G+V ++++L +N+W SI+ ++ + Sbjct: 139 GPFKFDLKTYKLYKNNEFIELSSKENLLIKFFMENPGQVFTKEQLYENIWNNSIIDDNAI 198 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 I +LRK L+DN + SP +I TV GYK + Sbjct: 199 MVYIHQLRKKLEDNVK-SPKHIVTVWGIGYKFIA 231 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR-SI 62 ++ + ++ S Q+ G T LL + A+H G V SRD L+D VW Sbjct: 130 SLISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLLDAVWGDARF 189 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 VT V + +R+ + ++D ++P ++ TV GY+ +P Sbjct: 190 VTPRSVDVYVRRIREKI-ESDPENPRFLKTVRGAGYRFEIP 229 >UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepID=A1JPG4_YERE8 Length = 219 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 79/197 (40%), Gaps = 23/197 (11%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + +G+ + TP +++ G + + + ++L H +VLSR+++ +W S VT+ Sbjct: 4 IIIGDIIFTPLKRTLNKGGSVIKIRNKESEVLSLLCFHYPDVLSREDIEKKIWSESYVTD 63 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + +TQ+IS LR +L D + + T+PK+GY L V + + E ++ + Sbjct: 64 NTLTQTISNLRHALNDKKHE---LVTTIPKKGYCLGVKPNFTDNDFSEISSVTQTEVLDS 120 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 T +S + F + + +F+ Sbjct: 121 LAYNT--------------------TESLSKQKYLASGFIVFMMFCVCLATSFNVTSDYY 160 Query: 186 PMSKSRILLNPRDIDIN 202 + + + P I+I+ Sbjct: 161 QIKITNVKNLPLTINID 177 >UniRef50_C2E0K8 Response regulator PhoP n=9 Tax=Lactobacillus RepID=C2E0K8_9LACO Length = 238 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 2/101 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + ++ G + + + +N + L P+ LLV+ AQ+ G V+SR++L+ +W Sbjct: 139 NEEIIETGNIKININKYSVFKNNEPVVLTPKEFQLLVYLAQNKGNVISREQLLQKIWGYD 198 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 ++ + +V IS LR L+D D P +I T GY+ + Sbjct: 199 LLGSSRIVDIHISHLRDKLED-DSSHPQHILTKRGFGYRFI 238 >UniRef50_Q1M6Q3 Putative adenylate cyclase/transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1M6Q3_RHIL3 Length = 955 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 29/277 (10%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 GE+ + P + + ++ + + R +++L+ + GE++++DELI W +IV Sbjct: 19 FGEFRLYPGRHLLVKDQEPVAVGSRALEILIALTERPGELVTKDELISRAWPNTIVEESN 78 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 + I+ LRK+L + D+ + YIA VP RGY+ + P+ P+ EA Sbjct: 79 LRAQIAVLRKALGE-DQSAARYIAAVPSRGYRFIAPLSRSE---------VKIHPVEEAA 128 Query: 128 PATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPM 187 P N P+ + L V + + Sbjct: 129 P------------NNLPKQLTRPIGREEAIGILEGRIQRFRLVTVVGPGGIGKTTVGVRV 176 Query: 188 SKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGD-------LVATSLNTFSTFMVH 240 ++ + + + S P L+ + + + LV+ L +V Sbjct: 177 AEELSSSYQHGVCFVDLAPLSHPSSLPSVLASLLRLPEITGDPISLVSAHLRDKHMLLVF 236 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 D +D + +TL + + ++ Sbjct: 237 DNCELVLDAAARLAETLLREAPGISVLATSREALRVE 273 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 3/99 (3%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS-I 62 ++R G+ + +++ R R++ L P LL F G V SR +L+D VW Sbjct: 130 TLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVWGHDIY 189 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 V V + LRK+L N + P I TV GY L Sbjct: 190 VDERTVDVHVGRLRKAL--NFSNMPDVIRTVRGAGYSLE 226 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI- 62 +++VG+ +V S ++ R+G + L R +LL + + G VL+R +++++VW Sbjct: 141 SMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWGYDFD 200 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + +VV + LRK + + I TV GY++ Sbjct: 201 PSTNVVDVCVQRLRKKV--DAGHDVHLIETVRGAGYRM 236 >UniRef50_Q0AQA4 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Maricaulis maris MCS10 RepID=Q0AQA4_MARMM Length = 412 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 1/107 (0%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 +G W V PS +++ LEP+++DLL A+ GEV+SR + +W V Sbjct: 7 FLLGAWRVEPSSCEVTGPEGVRELEPKVMDLLCLLAEAKGEVVSRATISARIWPGVTVNE 66 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEG 112 + + + +LR++L D SP Y+ TVPKRGY+L+ PV Sbjct: 67 DAMGRCVWKLRRALGDP-SRSPRYVGTVPKRGYRLLEPVSAIPVSPA 112 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 7/103 (6%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + VV++G+ + + + ++G++ L + +LL ++ G+V +R E++D VW Sbjct: 125 DRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRVWGMD 184 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + V IS+LR+ + +I TV GYKL++P Sbjct: 185 FFGDFRTVDVHISKLREKIG------SEFIKTVRGVGYKLVIP 221 >UniRef50_D1XII5 Two component transcriptional regulator, winged helix family n=1 Tax=Streptomyces sp. ACTE RepID=D1XII5_9ACTO Length = 253 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 6/101 (5%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS-I 62 +RVGE + P+ + GR++ + R DLL + G VL R ++I VW + Sbjct: 153 QALRVGELRLDPAARLVLLGGREVRVTRREFDLLAALVANPGVVLERRDIISRVWGENWF 212 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + + + LR L P +I TV GYKL P Sbjct: 213 GSTRTIDVHVGSLRGKLG-----CPEWIQTVRGVGYKLTAP 248 >UniRef50_A5IKU4 Two component transcriptional regulator, winged helix family n=6 Tax=Thermotogaceae RepID=A5IKU4_THEP1 Length = 220 Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 56/100 (56%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ + G+ + S + G+++ L + ++L+F A+++G+V++R++L++ W Sbjct: 119 KKGLYDFGDLKIDASGFTVFLKGKRIHLPKKEFEILLFLAENAGKVVTREKLLETFW-ED 177 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 V+ VV I +RK+++D D + P YI T+ GY Sbjct: 178 PVSPRVVDTVIKRIRKAIED-DPNRPRYIKTIWGVGYMFT 216 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M++ V+ G + S ++ +G + L P+ +LL FA+H V + D+L+ W Sbjct: 128 MEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQLLAKFWDG 187 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + H + +S LR+ + + D + P ++ V GY+ Sbjct: 188 -VGDRHTIRVHLSRLREKI-EADPNQPQFLVNVWGVGYRFE 226 >UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 Tax=Bacteria RepID=Q3DDJ6_STRAG Length = 225 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + +G + P+ + R ++ L + +LLV F ++ V +R EL+D VW + Sbjct: 129 IIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKVWGEQFLGE 188 Query: 66 -HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 V I LR L ++ IATV GY+L Sbjct: 189 TRTVDVHIGTLRTKLGEDG----YLIATVRGVGYRLE 221 >UniRef50_B8JG07 Transcriptional regulator, CadC n=3 Tax=Anaeromyxobacter RepID=B8JG07_ANAD2 Length = 396 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + R G + + P+ ++ G L+P++ ++L + ++ ++ +DEL+ +W Sbjct: 1 MGRMTWRFGAYELDPARRELRVAGEPRALQPQVFEVLTYLVRNRHRLVVKDELLRELWPD 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 +IVT+ + +++S R++L+ D + T ++GY+ + V+ + + + P Sbjct: 61 AIVTDASLQRAVSLARRALRPADRG---LLRTHARQGYRFVGEVVETEPDPADTAAEARP 117 Query: 121 P 121 Sbjct: 118 A 118 >UniRef50_C4IFN3 Transcriptional regulator n=15 Tax=Bacteria RepID=C4IFN3_CLOBU Length = 167 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV- 63 V++ E + + +GR + L P+ ++L F AQ+ G V +++++ + VW Sbjct: 68 VLKFNELEINAKNRTVQESGRAIVLTPKEFEILYFLAQNQGTVFTKEQIYNAVWDEDYFL 127 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 ++ + I +LRK + + + D P+YI T+ GYK Sbjct: 128 SDSNIMAFIRKLRKKI-EPNPDEPIYIITIWGVGYKF 163 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 3/102 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ ++ ++ ++ + N ++++L P+ +L + G V+S +EL VW Sbjct: 131 EEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEELFHEVWGDK 190 Query: 62 IVT--NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 T N+ V I LR+ + + P YI TV GYK+ Sbjct: 191 YFTNSNNTVMVHIRHLREKMH-GSAEHPKYIKTVWGVGYKIE 231 >UniRef50_C5AMA9 Transcriptional regulator, winged helix family protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5AMA9_BURGB Length = 979 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 4/96 (4%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 +V++G V ++ R+G L L R D+L + +G V+S+D L++ VW IV Sbjct: 1 MVQIGALHVDFERREVRRHGEGLRLSARAFDILDVLFRANGAVVSKDALLEAVWPNQIVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + + ++ LRK+L + E I T+ RGY+L Sbjct: 61 ENRLQVHVAALRKALHADRE----LIRTITGRGYRL 92 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 5/118 (4%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V+ VG + + ++ R++ L + DLL ++G LSRD L++ VW + Sbjct: 130 VLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERVWGSDFLG 189 Query: 65 -NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 N + + LR+ L + D +P I TV GY P ++ G ++ S P Sbjct: 190 SNRTIDVHVRWLREKL-EPDPANPTLIRTVRGIGYCFQDP---ATDPPGRRMLEESEP 243 >UniRef50_C5SN08 Transcriptional regulator, CadC n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SN08_9CAUL Length = 651 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 73/404 (18%), Positives = 136/404 (33%), Gaps = 44/404 (10%) Query: 1 MQQPVVR-----VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELID 55 M +P+ + +G V P+ +++R + +EP+++ +L H G+V+SRD+L+ Sbjct: 1 MSRPLAQLTDLNIGRLRVKPAACEVTRETKVWVIEPQVMRVLALLGLHHGQVVSRDDLVK 60 Query: 56 NVWKRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEI 115 W V+ + + +S LR+ +D+ + +I TV K GY+L + E E Sbjct: 61 ACWDGRAVSEDAINRVLSRLRQLGRDSGD---FHIRTVRKVGYRLEI----LEPETAPEE 113 Query: 116 MLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVAL 175 +++ PP P ++ + L A + V F L++ A Sbjct: 114 TITAAPPTPAGHRSSINKLWLLGAGAAAALVLAIMLWWSTTQRPLVQKGFSLAIADIRAD 173 Query: 176 VAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLS-YAIGVG---DLVATSL 231 + RL + L R + +V K+ S + Y LS Y G ++ T Sbjct: 174 GPAALPPERLRSQLTHTLSQMRGL--KLVAKTKGSEGADYILSGYVSGTQASPNIELTLS 231 Query: 232 NTFSTFMV--------HDKINYNIDEPSSSGKTLSIAFVNQR--QYRAQQCFMSIKLVDN 281 T S + + ++ + QR R+ +++ Sbjct: 232 ETRSHTQIWSARFDQALMSEPTAPERAVAATARYMAVVLGQRVVGPRSTGDPPPVEVATQ 291 Query: 282 ADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFY 341 + KR + + +N A I P L Y Sbjct: 292 INE----GKRALSQAHDARHNRNWPRFDQLMA----EVDSHATRALAIEPQSAGALMLKY 343 Query: 342 QAHDYLLHGDDKS--------LNRASELLGEIVQSSPEFTYARA 377 + L+ RA + V S P+ A Sbjct: 344 EVDALPLYPRPGENRSEFAERQQRALSFVTRAVTSDPDNPEVLA 387 >UniRef50_A3PUD7 Two component transcriptional regulator, winged helix family n=6 Tax=Mycobacterium RepID=A3PUD7_MYCSJ Length = 237 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + VG ++ + ++ +GR ++L R DLL+FF H+ V +R+EL+ VW+ Sbjct: 132 LTVGALTISAAARSVTVDGRPVSLTNREFDLLLFFITHADTVFTREELLKQVWRWDFGDL 191 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYK 99 VT + LR L D + TV RGY Sbjct: 192 STVTVHVKRLRSKLGDQHR-----VQTVWGRGYM 220 >UniRef50_B5ZPU5 Transcriptional regulator domain protein n=11 Tax=Rhizobiales RepID=B5ZPU5_RHILW Length = 502 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 65/179 (36%), Gaps = 12/179 (6%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 MQ G +++ P+ + RN + + R + LL GE+L + EL+D W Sbjct: 1 MQASRFAFGPFVLDPAAGTLLRNDDPVAVGDRGVKLLAALVGRPGEILGKAELMDAAWPG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 V +T I++LRK L D +IATVP+ GY+ + + + + L Sbjct: 61 RAVEEGNLTVQIAQLRKLLG-PAADGGEWIATVPRVGYRFTGALNLLGGVKRKALPLPDR 119 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFS 179 L N + PEQ + L + AFS Sbjct: 120 -----------LSIAVLPFLNISDDPEQEFFADGLTEDLITDLSRMPGLFVIARNSAFS 167 >UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SAM2_YERMO Length = 243 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 5/132 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + + +G + TPS I++ G + + + ++L H LSR+E+ +W Sbjct: 25 MDE--IIIGNIIFTPSKRTINKGGAVVKIRNKESEVLSLLCHHYPSSLSREEIEREIWGE 82 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 S VT++ +TQ+IS LR +L D + + T+PK+GY + + + S ++++L+ Sbjct: 83 SYVTDNTLTQTISNLRHALDDKARE---LVTTIPKKGYCIGIKPDFTSSNSLQDLILTQD 139 Query: 121 PPIPEAVPATDS 132 + P + S Sbjct: 140 DSMVSVKPKSTS 151 >UniRef50_A2W5F3 Putative uncharacterized protein n=1 Tax=Burkholderia cenocepacia PC184 RepID=A2W5F3_9BURK Length = 997 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 4/101 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + ++++G V I R+G L + R +D+L + SG V+S+D+++D VW Sbjct: 89 EAAMIQIGTLSVDFEQRDIRRHGASLRIGARALDILEVLHRASGSVVSKDDIMDAVWPGL 148 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 IV + + ++ LRK+L + + I TVP RGY L+ Sbjct: 149 IVEENRLQVHVATLRKALGASRD----LIKTVPGRGYLLVA 185 >UniRef50_A1TS46 Transcriptional regulator domain protein n=2 Tax=Acidovorax RepID=A1TS46_ACIAC Length = 531 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 15/147 (10%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 P +++ Q+ +G + L R D+L +G ++++ EL VW +V Sbjct: 24 PEFAFDHFVLKVRERQLLSHGCPVALGARAFDVLCTLVHRAGTLVTKSELFRQVWPGMVV 83 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + + +S LRK + + I T+P +GY+ + V E E ++ P+ Sbjct: 84 EENNLQVHVSALRKLVGADR------IVTIPGQGYRFVGRVAGPPEPGQE----AARAPL 133 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSP 150 P+A S S+ + P+ + Sbjct: 134 PDA-----STGRSIAVLPFGAAPDAAQ 155 >UniRef50_B1ZTA9 Transcriptional regulator, CadC n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZTA9_OPITP Length = 584 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 2/101 (1%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + R G + + + ++ R+L L+PR DLLV+ +H V+S+DEL+ +W IVT Sbjct: 2 IFRFGRFELDEARRELRLGPRRLELQPRTFDLLVYLVRHHERVVSKDELLQALWPGVIVT 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVI 105 + V +++S +R +L+ + I T ++GY+ ++ Sbjct: 62 DSSVMRAMSLVRSALRAGGAAN--LIDTFSRQGYRFTGELL 100 >UniRef50_Q0RFU4 Two-component system response regulator n=18 Tax=root RepID=Q0RFU4_FRAAA Length = 278 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 6/148 (4%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++R G + +I+ +GR + + R DLL F A G V +R E+ VW + Sbjct: 126 LLRHGPLTLDRRSRRITVDGRPVAVTAREYDLLAFLAADPGRVRTRQEIFTGVWGDWFGS 185 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 V+ I +R+ L P I TV G++L S + + Sbjct: 186 PKVLDVHIGAIRRKLG-----KPELIETVYGVGFRLAGAQAARSHATATQATGTQATGTQ 240 Query: 125 E-AVPATDSPSHSLNIQNTATPPEQSPV 151 +T + P + PV Sbjct: 241 STGTQSTGTRGTGTRGVVGPADPARLPV 268 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + GE + + + + G ++L P+ DLLVF A + G LSR++++ VW Sbjct: 201 TMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKVWNYDYFG 260 Query: 65 -NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + V + LR L YIATV GYK Sbjct: 261 EDRTVDTHVKMLRGHLG----KCRGYIATVWGIGYKFDPD 296 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK- 59 +Q+ V+ + ++ R+ + + L + +LL F A++ +V S+ +L+D VW Sbjct: 130 VQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSKSQLLDAVWGY 189 Query: 60 RSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + + +T I +R+ + + + PVY+ TV GYK Sbjct: 190 DTYGDENTITVYIRRIREKI-EINPSHPVYLQTVWGVGYKF 229 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ ++ + S ++ ++++L + ++LL FFA + +V ++ +L NVW + Sbjct: 132 EKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQLFRNVWDSN 191 Query: 62 IV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + ++ V I +LRK + + D +P +I TV GYK + Sbjct: 192 YIEDDNTVMVHIRKLRKKI-EADPSNPKFIQTVWGIGYKFVGE 233 >UniRef50_D0MIF5 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIF5_RHOM4 Length = 231 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI-V 63 V+R+G + Q+ L L P+ DLL F A+H GEVLSR + + VW V Sbjct: 127 VIRLGPLEINERRRQVRVGEYVLPLRPKEYDLLRFLARHPGEVLSRTRIAEQVWGDPFYV 186 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 +++ + ++S LR+ L + I TV GY L Sbjct: 187 SDNTIDVTVSGLRQKLSEATPALQ--IETVRGVGYAL 221 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI-VT 64 + G + + + ++RNG L L + LL F ++ +VLS++ ++D VW V Sbjct: 128 IEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVWGPDADVI 187 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + V + LRK + + D P YI TV GY Sbjct: 188 GNAVENYVHFLRKKIDE--PDLPSYITTVRGVGYMFHPD 224 >UniRef50_A3UJQ2 Transcriptional regulator n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UJQ2_9RHOB Length = 416 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 71/119 (59%), Gaps = 3/119 (2%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G V P++N+I+ + LEP+++DLLV+ AQ GEV S+D++ +W + V + + Sbjct: 10 GPVRVEPAMNRITSEEGPVELEPQVMDLLVYLAQAKGEVRSKDDIARALWPDASVNDDAL 69 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 +++I +LR++L D D SP ++ TV +RGY+L++PV G E + P + V Sbjct: 70 SRTIWKLRQALGD-DAKSPRFVQTVSRRGYRLIMPVATLG--AGMEAQTETGPRMSATV 125 >UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum RepID=Q89V41_BRAJA Length = 516 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 4/137 (2%) Query: 12 LVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQS 71 ++ + +++ G + L+P++ DLL++ V+S+D+LI +W IV++ + Sbjct: 9 VLDGDLRELTCAGVAVPLQPQVFDLLLYLVAQRARVVSKDDLISQIWSDRIVSDSALNSR 68 Query: 72 ISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATD 131 I+ RK+L D D + I T+P++G++ + V E+ + + P P A Sbjct: 69 INAARKALGD-DGATQRLIKTIPRKGFRFIGEVR---EDVAVTLAPAEPAAAPARTVADR 124 Query: 132 SPSHSLNIQNTATPPEQ 148 L +N + PEQ Sbjct: 125 PAIAVLAFENMSGDPEQ 141 Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 65/175 (37%), Gaps = 7/175 (4%) Query: 213 SPYQLSYAIGVGDLVATSLNTFSTFMVHDK-INYNIDEPSS----SGKTLSIAFVNQRQY 267 P Q + G+ + + T+L+ FMV + ++ + + L + ++ + Sbjct: 138 DPEQDYFGDGISEDILTALSKQRWFMVIARNSSFIYKGRAVHIRQIAEELGVRYIVEGSV 197 Query: 268 R--AQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQET 325 R ++ ++ +L D A GS + +RY N A+Q+++ ++ A+ Sbjct: 198 RKADKRVRITAQLNDAASGSHLWAERYDRELVNVFAVQDEITNAIVAAIEPQIHAAENFR 257 Query: 326 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKA 380 + P +A + + A LL + P + A + A Sbjct: 258 SHRKPPASLDAWDLLMRALSHYWRVTRQDHEAAQALLERAIGIDPNYGQALSVLA 312 >UniRef50_UPI00017F4CF5 two-component response regulator n=2 Tax=Clostridium difficile RepID=UPI00017F4CF5 Length = 124 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ ++ G +++ S ++ ++G+ + L + + +L FA + +++S+++L D VW Sbjct: 21 EEKIISFGPYILNESRAELIKDGKSIGLSAKELKILSLFAHNQNQIISKEKLWDKVWGED 80 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V ++ + I ++R+ L+DN P YI T+ GYKL V Sbjct: 81 YVGFDNTIMVHIRKIREKLEDN-PSKPEYILTIKGLGYKLAV 121 >UniRef50_C8W6G9 Putative two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W6G9_DESAS Length = 277 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 10 EWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RSIVTNHVV 68 ++ + +++ N + + L R +LL A H ++ +R+ L+ +W+ S ++ V Sbjct: 183 DFEICAVTRKVTVNEKNVRLTSREFELLWLMASHPNQIFTRNNLLTTIWEADSAGDDNTV 242 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 T I LRK + + + + P YI TV GY+ Sbjct: 243 TVHIRRLRKKI-EVNPNKPRYIKTVWGVGYRFE 274 >UniRef50_A4CDV0 Putative transcriptional regulator n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CDV0_9GAMM Length = 676 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 41/239 (17%) Query: 6 VRVGEWLVTPSINQISRNGRQ--LTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V+ G+++ +++ + + LEP++ LL F H EVLS++ L D +W +IV Sbjct: 21 VQFGDFIFDLGQDELIHHHSRAITKLEPQVSQLLHLFVTHPAEVLSKEYLQDTLWPNTIV 80 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + + Q ++++R+ L D+ SP YI T+PK+GY + PV Y+ Sbjct: 81 EQNSLYQLLTKIRRLLNDS-SRSPQYIKTLPKKGYCFIAPVTRYN--------------- 124 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 P+A P DS +N N + P ++W + + +L IC + AF S Sbjct: 125 PQAKPINDS---VINNTNVSEPN-------------YLWLWLVPALIICFSAYAFFSQYD 168 Query: 184 RLP-------MSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFS 235 P S L D+D+++ Y L + G ++ + + Sbjct: 169 VAPETPQYQLQDVSYELGLESDVDVHISENLMAYVKDIYTLHISNKQGQVLHQLNSPYR 227 >UniRef50_Q48IP6 Transcriptional regulator, LuxR family n=1 Tax=Pseudomonas syringae pv. phaseolicola 1448A RepID=Q48IP6_PSE14 Length = 936 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 99/256 (38%), Gaps = 11/256 (4%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 Q +R G +++ P + R+ + + L R + LLV FA GE+L + EL+ W +++ Sbjct: 13 QEAIRFGSFVLHPQQQLLFRHSQPVPLGSRAMSLLVAFATRPGELLEKAELLTLAWPKAV 72 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 V + I LR++L++ D+ YI TVP RGY+ PV + Sbjct: 73 VEECNLRAQIVTLRRALEEQDDF--TYIVTVPGRGYRFSAPVSVQPATAPALPAPAP--- 127 Query: 123 IPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLG-ICVALVAFSSL 181 T + + ++ Q + + +G VAL SL Sbjct: 128 --APAKDTFAAAPAIKRQVLGRDALVRQLHELTLKRRLLTLTGPGGVGKTTVALALADSL 185 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHD 241 +S + + L P +V + + + + + SL +V D Sbjct: 186 AAHASLSTAFVDLTPVSCAQPVVGRIAFALGLSTENEQPLR---DIPPSLAKRPQLLVLD 242 Query: 242 KINYNIDEPSSSGKTL 257 + +DE +S+ + L Sbjct: 243 NCEHVLDETASAVEAL 258 >UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 Length = 240 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Query: 11 WLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQ 70 + + P+ ++ NG ++ + + LL++F +H ++LS+ ++ +VW + V Sbjct: 142 FKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIYKDVWGEFYGGDSTVMV 201 Query: 71 SISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYS 108 + LR+ L++ D P +I TV +GY I Sbjct: 202 HVRRLREKLEE-DPSRPRWIKTVRGQGYIFEAEPIDED 238 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + ++ G +++ +++++G +L+L P+ + A G VLS+++L++ W + Sbjct: 130 RGDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQLVEAAWGKE 189 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V +T I +LR+ ++D D P I TV GY+ Sbjct: 190 FVGETSSITVFIKKLREKVED-DPSDPRVIQTVWGIGYRFEPE 231 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 ++ G + ++ + L DLL A+ V SR +LID VW V Sbjct: 196 TILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQLIDRVWGEDWV 255 Query: 64 TN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + H+V I LR+ L D+D Y+ TV GY++ Sbjct: 256 GDEHLVDVHIGHLRRKL-DDDASRGQYLRTVRGVGYRM 292 >UniRef50_C7N5H9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5H9_SLAHD Length = 234 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 2/99 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V+ +G+ + Q++ R+L L + D+L+ A+ V +R +++D+VW V Sbjct: 137 SVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVVFTRQQILDSVWGYGYV 196 Query: 64 TNH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + VV I +LR+ + + D PV+I T GY+++ Sbjct: 197 GSSGVVAVFIRKLREKI-EADPSRPVHIITEWGVGYRIV 234 >UniRef50_A9KM61 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KM61_CLOPH Length = 224 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G V ++ ++ L+ + L ++ QH V+++DEL NVW + ++ + Sbjct: 132 GRIRVDVKARKVYVEDMEIELKNKEFKLFLYLFQHPNIVITKDELFANVWGDAFFSDGTL 191 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 I +LR+ + + D ++P I T+ GY++ Sbjct: 192 NVHIRKLREKI-EKDPNNPEIIKTIWGTGYRME 223 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 52/99 (52%), Gaps = 2/99 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ +++ G+ V ++ +NG + L + LL ++ + ++++++D +W + Sbjct: 125 EEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLWPDT 184 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYK 99 + ++V+ + LR+ +++ D SP I TV GYK Sbjct: 185 FPEDPNIVSVLVRRLREKIEE-DPSSPRIIKTVWGVGYK 222 >UniRef50_B2J8Q5 Two component transcriptional regulator, winged helix family n=8 Tax=Cyanobacteria RepID=B2J8Q5_NOSP7 Length = 239 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 2/101 (1%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 + + ++ P ++ N + L L ++L F A H + SR +LI +W V Sbjct: 134 QRIIFKQLVINPEGREVILNDKLLGLTALEFNILHFLASHPNQAWSRPQLIQKIWGCDYV 193 Query: 64 TN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + VV I +LRK + + D P +I TV GYK P Sbjct: 194 GDGRVVDVHIGQLRKKM-EVDPSVPEFIKTVRGYGYKFEAP 233 >UniRef50_D1TNN3 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TNN3_9BURK Length = 489 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 6/99 (6%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + V+ Q+ R+G+ + R D+L + +G+++++DE++ VW + V Sbjct: 1 MYVFDRVAVSLDGRQVFRDGQAQPIGARAFDILELLIRSAGKLVTKDEIMRLVWPTTFVV 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + + IS LRK D +I TVP RGY+L P Sbjct: 61 ENNIQVHISALRKLFGDG------WIRTVPGRGYQLRTP 93 >UniRef50_C6AYW7 Transcriptional regulator, winged helix family n=6 Tax=Rhizobiales RepID=C6AYW7_RHILS Length = 946 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + G + ++ ++++G + L R +DLLV ++S+ +LI VW IV Sbjct: 12 LSFGPFRLSVGQRLLAKDGVPINLGARALDLLVALTLAPNVIVSKQDLISRVWPDVIVDE 71 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 + ++ LRK+L D D YI T+ RGY + P+ Sbjct: 72 GSLRFHMTGLRKALGD-GHDGARYITTIAGRGYCFVAPI 109 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q + +G+ + + +G+ ++L + DLL F Q++ +V SR++L+D +W Sbjct: 130 QSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQIWGAD 189 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + N V I LR L + I TV GYK Sbjct: 190 YIGNLRTVDTHIKTLRLKLGEAGGS----IQTVWGIGYKFE 226 >UniRef50_C7NFF7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=11 Tax=Actinomycetales RepID=C7NFF7_KYTSD Length = 244 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 11 WLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH-VVT 69 + S + +G ++TL + DLL + G V+SR++L+ W+ V + + Sbjct: 151 LRIDSSARRAWVDGEEVTLTAKEFDLLHILVRDMGRVVSREQLMREAWQTDWVGSTKTLD 210 Query: 70 QSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 +S LRK L D D P +IATV G++L+ Sbjct: 211 MHVSGLRKKLGD-DHSDPRFIATVRGVGFRLV 241 >UniRef50_D2Q6K7 Response regulator-like transcriptional regulatory protein n=7 Tax=Bifidobacterium RepID=D2Q6K7_9BIFI Length = 253 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 8/113 (7%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + ++R G+ +V + S + L + +LL + QH G V +R +L+ VW Sbjct: 133 EDGLIRSGDLVVDTNGYTASLRSHPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYD 192 Query: 62 -IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGE 113 V I LR L + I TV GY+ P EEEGE Sbjct: 193 YYGGTRTVDVHIRRLRAKLG---GEYEHVIGTVRNVGYRFDPP----EEEEGE 238 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 3/98 (3%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV-T 64 + +G + P +++ NG +TL P+ ++L++ A+ G V++RD+L++ VW + Sbjct: 138 IVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRDDLMNAVWGFDYIGG 197 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V +S LRK L+ + + V+I ++ GYKL+V Sbjct: 198 QRTVDVHVSSLRKKLELDPQS--VHIDSIRGVGYKLVV 233 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 2/101 (1%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V+ + + + P + RNG L L LL A V SR++L++ VW Sbjct: 145 EVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERVWGYDYF 204 Query: 64 TN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + +V + LR +++ D P + TV GYK+ Sbjct: 205 GDGRIVDVHVRRLRTKIEE-DPAHPRILVTVRGLGYKIQPA 244 >UniRef50_Q0BZ36 TPR domain protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZ36_HYPNA Length = 522 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 3/140 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 P R+G + P + ++S LEPR++ +L+ A S EV++RDELI W V Sbjct: 19 PRCRIGALTLAPPLREVSGPDWTEVLEPRVMQVLIALASPSAEVVTRDELIARCWNGLAV 78 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + + + I LR+ +D I TVP+ GY+L+ E + + + P Sbjct: 79 SEDAIQRCIGRLRRLARDRGS---FEIVTVPRVGYRLLPDAAPMPRETSDRLKGHTRSPA 135 Query: 124 PEAVPATDSPSHSLNIQNTA 143 P+ + + S+ + + Sbjct: 136 PQLLVDVEPFSNLTPDETVS 155 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 VRV + ++ +I R GR++ L + +LL A++ G+V SR E+ + VW + Sbjct: 130 VRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVWPEYTGGS 189 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 +VV I LR+ L++ E I TV GY L Sbjct: 190 NVVDVYIGYLRRKLEEGGE--RRLIHTVRGVGYVL 222 >UniRef50_D1A718 Putative two component transcriptional regulator, winged helix family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A718_THECD Length = 220 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 6/96 (6%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW-KRSI 62 V++VG + P ++ R +TL DLL F G V +R++L++ W Sbjct: 126 HVLQVGAVSLDPRARTVTAGDRAVTLTATEFDLLCFLMGRPGRVFTREQLLEAAWEPGVS 185 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGY 98 N V I++LR L + I TV GY Sbjct: 186 AGNRTVDVHIAQLRAKLGEASP-----IRTVRGVGY 216 >UniRef50_C2EBW1 Two-component response regulator n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2EBW1_9LACO Length = 247 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+ + + + + ++G+ L L P+ LL + A+H G+VLSR++L+ VW Sbjct: 141 QKRIFELNGITLCLDSFRAIKDGKDLQLTPKEFKLLDYLAKHCGQVLSREQLLQGVWGYD 200 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 I+ + +V IS LR L + D ++P++I T GY Sbjct: 201 ILGTSRIVDIHISHLRDKL-EADPNTPLWIKTNRGFGYSF 239 >UniRef50_B5EQN9 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B5EQN9_ACIF5 Length = 243 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 3/96 (3%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR-SIV 63 VR+G V +++ + Q+ L P LL F + V SRD L+D +W R S V Sbjct: 136 RVRLGGLQVDLRAHRVYADEVQVHLGPTEFRLLRLFVTNPERVFSRDMLLDQIWGRQSFV 195 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYK 99 V I LR+ L+ + I TV GY+ Sbjct: 196 EERTVDVHIRRLRRGLEHHG--YAQIIETVRGEGYR 229 >UniRef50_P15795 Cholera toxin transcriptional activator n=121 Tax=Gammaproteobacteria RepID=TOXR_VIBCH Length = 294 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 7/163 (4%) Query: 11 WLVTPSINQISR---NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS--IVTN 65 + P N + + + L +L AQ EV+SR++L D VW+ V + Sbjct: 26 FTFDPLSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISRNDLHDFVWREQGFEVDD 85 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 +TQ+IS LRK LKD+ + SP Y+ TVPKRGY+L+ V EE E + PE Sbjct: 86 SSLTQAISTLRKMLKDSTK-SPQYVKTVPKRGYQLIARVETVEEEMARESEAAHDISQPE 144 Query: 126 AVPA-TDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLL 167 +V +S S + TP + V +K L+ Sbjct: 145 SVNEYAESSSVPSSATVVNTPQPANVVTNKSAPNLGNRLLILI 187 >UniRef50_A6LVN5 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=A6LVN5_CLOB8 Length = 228 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV-T 64 +++G + Q+ + L + D+L A + G V S +++ + +W + Sbjct: 134 IKIGSLTINRDTRQVFIANNTVRLTQKEFDILELLASNKGIVFSIEKIYEKIWGDVFFES 193 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 ++ V I ++R+ +++ ++P YI TV GY++ Sbjct: 194 DNTVMVHIRKIREKIEEE-PENPRYIRTVWGVGYRI 228 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 2/97 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT- 64 +++G+ + + + RNG L P+ DL F Q+ V SR++L++ VW Sbjct: 160 LKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLEKVWGYDYPGW 219 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 V IS LR+ + + D SP ++ TV GYK Sbjct: 220 TRTVDVHISWLRQKI-EADPSSPRHLITVRGTGYKFE 255 >UniRef50_D1CGU9 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CGU9_THET1 Length = 233 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RS 61 + +VR G+ + + G+ + L P D+L A H G+V++ L+ VW Sbjct: 132 EMIVRSGDLTIDLERRAVYVAGQLVRLTPTEYDVLKCLAVHGGKVVTHRMLLREVWGSEQ 191 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + +I+++R+ L D D P YI T P GY+LMV Sbjct: 192 PADTSNLRYTITQIRRKLGD-DPTHPRYILTEPGVGYRLMVD 232 >UniRef50_D1BL25 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BL25_VEIPT Length = 229 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 2/102 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK- 59 M+ ++ GE + P + ++ N +++ L+ + LL F ++ V S++EL VW Sbjct: 129 METNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELYSRVWGL 188 Query: 60 RSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 S V I+ LR+ ++DN DS +I TV GYK + Sbjct: 189 DSYGDYATVAVHINRLREEIEDNPSDS-KHIITVWGVGYKFV 229 >UniRef50_Q1QIX2 Lysine decarboxylase transcriptional regulator, CadC n=2 Tax=Rhizobiales RepID=Q1QIX2_NITHX Length = 574 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 69/404 (17%), Positives = 125/404 (30%), Gaps = 40/404 (9%) Query: 5 VVRVGEWLVTPSINQISR-NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V+ + + ++ G L L P+ + LL+ FA + G VLS+ EL+D VW V Sbjct: 2 VLCFAGFQLDRPRAELRGPGGEALKLRPKTLCLLILFATNPGRVLSKRELMDAVWPNVHV 61 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + + Q I E+R +L D + + V GY V + + PP Sbjct: 62 GDDSLFQCIREIRTALGD---ERRQLVRLVSGHGYVFEAEVSVQAASSDTPVPSPVPPFS 118 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 P ++ P + R + + +L + V L A ++ Sbjct: 119 VTDAPGEPDTPGKPDVTIE-------PTRLSRLSGLRRPAAMIAALSVVVGL-AVATAIQ 170 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKI 243 R P+ + R + I + ++ + A G+ + + Sbjct: 171 RAPIFEERGPPTIAVMPIKAAGGEAAAMAANVTVRLADGLAK-------------IENIR 217 Query: 244 NYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMS--IKLVDNADGSTMLDKRYVITNGNQLA 301 + + T FV + + + +++ AD + IT G+ Sbjct: 218 VVALQSALPAAGTPQADFVLSGELQQGEGTWDAQVRMTRTADREVVWTAPATITVGDAEL 277 Query: 302 IQNDLLESLSKALNQPWPQRMQETLQKIL-PHRGA-------LLTNFYQAHDYLLHGDDK 353 L+ ++ P R+ L P QA +L Sbjct: 278 SLQQS--RLAASIGHPLAVRISTLLDAAAKPTESGRGASPGSANVVIEQATASILRTTRD 335 Query: 354 SLNRASELLGEIVQSSPEFTYA---RAEKALVDIVRHSQHPLDE 394 A +L + + PE A L I P D Sbjct: 336 RFATAQTMLEKALAGDPENVDLAVSLAALQLRGIQMVWYSPADS 379 >UniRef50_C4L1R5 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L1R5_EXISA Length = 230 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 + + Q ++ + L P+ D+L +F +H +VL+ +++ + VW + Sbjct: 134 STLVFENVTLDLQTRQCRKDEMLIRLTPKEFDILAYFMRHPNQVLTVEQIYEAVWGEAAF 193 Query: 64 T-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 ++ V I+++R+ L+D P I TV GY+L Sbjct: 194 EVDNTVMVHITKIREKLEDT-PRKPTIIKTVWGVGYRL 230 >UniRef50_D1VJ14 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VJ14_9ACTO Length = 284 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + V+R G +V +I+ GR + R DLL + A G V +R E+ +W Sbjct: 182 LDPDVIRHGTLVVDRRTRRITLAGRPVAATAREFDLLAYLAADPGRVRTRREIFQEIWGP 241 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + V+ I LR+ L P I TV G++L P Sbjct: 242 WFGSTKVLDVHIGSLRRKLG-----RPELIETVYGVGFRLADP 279 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + ++++ +++ + + DLL F ++ G SR EL+D VW S Sbjct: 133 SKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTELLDLVWGAS 192 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 H V I+ LR +++N P YI TV GYK Sbjct: 193 YSGYEHTVNSHINRLRMKIEEN-PAKPKYILTVWGVGYKF 231 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V+R + P ++ + R+LTL P+ LL F +H V SRD+L++ +W + Sbjct: 161 VLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVWSRDQLLEKIWGIDFMG 220 Query: 65 NH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + + I LR+ ++ N +P Y+ TV GY+L Sbjct: 221 DSKTIDVHIRWLREKIEAN-PSNPSYLLTVRGFGYRL 256 >UniRef50_B0N9X7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0N9X7_EUBSP Length = 152 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 +Q +R+GE + +++ + +++ L +L A H G +LS++++ + VW Sbjct: 48 EQEPMRIGELYIQSEQHKVLKRDQEVRLTNIEFRILYVLALHQGSILSKEQIYNFVWNGE 107 Query: 62 IV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + + +T I LRK ++D D P YI TV GY++ + Sbjct: 108 YLWDDSNITSHIRRLRKKIED-DPSRPEYIQTVRGVGYRMNM 148 >UniRef50_UPI0001787E68 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787E68 Length = 239 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 3/101 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+ ++R+G+ ++ P + R + L R DLL+F A+ G+V +R++++ VW Sbjct: 127 QEEIIRIGDLVIDPLSRNVIREEEPVELTHREYDLLLFLARRQGQVCTREDILKQVWDYD 186 Query: 62 I-VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 +VV I LR+ + + + T+ GYKL+ Sbjct: 187 FHTGTNVVDVYILHLREKI--DRGRKQKLLRTIRGAGYKLL 225 >UniRef50_C6LGA3 Transcriptional regulatory protein CutR n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LGA3_9FIRM Length = 101 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 10/101 (9%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 +QPV++ G + P ++ G ++ L P+ D+L Q+ G VLS +++ VW+ Sbjct: 9 RQPVIQRGNLTIDPQCYTVTLAGEEIDLYPKEFDVLHLLMQYPGWVLSSEQIYKAVWQED 68 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + VV I +LR +P I TV RGYK + Sbjct: 69 TIGCERVVYNVICQLR---------NPDMIQTVIGRGYKFV 100 >UniRef50_A0Y3K5 DNA-binding transcriptional activator n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y3K5_9GAMM Length = 235 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 36/105 (34%), Positives = 59/105 (56%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + +GE+ + + TLEP+ + +L + + ++S +EL +NVW+ IVT+ Sbjct: 131 LTIGEYTFDSLQQSLIKEDNLYTLEPKCMQVLSYLIEQRPRIVSLEELHNNVWENQIVTD 190 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEE 110 V + IS+LR +L DND +P YI +V KRGY+L+ V E Sbjct: 191 TAVRRVISKLRVALNDNDTKNPKYIKSVMKRGYQLIAEVKTQPIE 235 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 4/95 (4%) Query: 11 WLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-HVVT 69 + I ++ + + + PR DLL AQ+ V +R+EL+ VW + V Sbjct: 138 LEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVWGYDYFGDQRTVD 197 Query: 70 QSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 I LR L + Y+ TV GYK PV Sbjct: 198 VHIRRLRTKLASLPHE---YLQTVWGVGYKFTPPV 229 >UniRef50_Q067N9 Two component transcriptional regulator, winged helix family protein n=1 Tax=Synechococcus sp. BL107 RepID=Q067N9_9SYNE Length = 234 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 10 EWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH-VV 68 + + P + +R G+ L L P+ LL F Q+ V SRD+LID +W + + V Sbjct: 143 DLELIPEECRATRGGKDLKLSPKEYKLLELFIQNPKRVWSRDDLIDQIWGVDYIGDRKTV 202 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 I LR+ ++ N D P ++TV GY+ Sbjct: 203 DVHIRWLREKIEANPSD-PTKLSTVRGFGYRFC 234 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++P + + + P +++ ++ L L P+ +LL++ +H L+R+ L++ +W Sbjct: 140 REPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRERLLERIWGYD 199 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 +V I +LR+ ++DN +P YI T+ GYK Sbjct: 200 FGQETRLVDVHIGKLREKIEDN-PKAPQYIQTIRGYGYKF 238 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + ++ G+ V ++ ++ L P+ +LL ++ V +R+E+++ +W S Sbjct: 130 KDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKIWGFS 189 Query: 62 I-VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V + + +RK L + + I TV GYK V Sbjct: 190 FAGGTRTVDEHVKRIRKKL-EPESGFDSLIQTVWGVGYKFEV 230 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 53/101 (52%), Gaps = 2/101 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++++G+ ++ ++ +NG+Q + +L +H+G V ++ + ++VW + Sbjct: 139 NHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKASIYEHVWGQE 198 Query: 62 IVTNHVV-TQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + + + IS+LR+ ++DN PVY+ T+ GY+ Sbjct: 199 YIGDENLIMVYISKLREKIEDN-PRKPVYLITIRGLGYRFE 238 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 1/100 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 +++ + + +V ++R + L P+ D+LV ++ G V R+E+ VW Sbjct: 139 VKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLVWGE 198 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + + LR+ LKD P I T GY Sbjct: 199 PCYDTRTIDVHVKNLREKLKDIKTKGP-MIETKWGVGYYF 237 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 3/99 (3%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 + G + ++ ++ L P+ D+L A H +V S + + VW + Sbjct: 139 SAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEHIFQQVWGEAYY 198 Query: 64 TN--HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + + V I LRK L + D+ +I TV GY Sbjct: 199 ESGGNTVMVHIRTLRKKLGE-DKQHQQWIKTVWGVGYAF 236 >UniRef50_A3VIF4 Adenylate/guanylate cyclase/hydrolase, alpha/beta fold family protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VIF4_9RHOB Length = 393 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 G + ++ R+G + LEP++ DLLV FA + G ++ RD LID +W IV++ Sbjct: 5 FGTCEIDTDAHEFRRDGSVIALEPQVFDLLVLFASNPGLLIGRDRLIDEIWNGRIVSDAA 64 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 ++ I+ +R+++ D D + + TVP+RG++ + V + E Sbjct: 65 ISSRINAVRRAVGD-DGARQMVLQTVPRRGFRFVAQVENAQLKARETQPGERQA 117 >UniRef50_Q9F5J0 Sim1 n=2 Tax=Streptomyces antibioticus RepID=Q9F5J0_STRAT Length = 251 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V + G + ++R+G ++ L + D+L A G V +R++++ VW Sbjct: 145 EAGVRQFGPVRIDLQRRSVTRDGHEVPLTRKEFDMLALLATDPGRVFTREQIMFEVWGHD 204 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + + ++ +RK L+ P + TV G++L Sbjct: 205 GAGDTRTLGVHVTGIRKKLR-----MPELVETVRGVGFRL 239 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 1 MQQPVVR---VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNV 57 M+ PV VG + + ++ NG +L L + + LL F ++ +LS++ L V Sbjct: 125 MEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQV 184 Query: 58 WKRSIVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 W S ++ V I LR+ + + + P YI TV GY+L V Sbjct: 185 WGESFFGSDNTVMVHIRRLREKV-EPNPSEPTYIKTVKGLGYRLTV 229 >UniRef50_B8ESP8 Transcriptional regulator domain protein n=4 Tax=Rhizobiales RepID=B8ESP8_METSB Length = 522 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 58/138 (42%), Gaps = 7/138 (5%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + ++ + + ++ NG + +EP++ LL F + V +++E++ VW +++ Sbjct: 2 IYLFEDFELDTARVELRTNGVAIAIEPQVFALLCFLVESRDRVATKEEIVARVWNGRVIS 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + I R++L D D + I T+ G++ + V + S P Sbjct: 62 DSAIASRIKSARRALGD-DGGAQRLIRTIHGIGFRFVADVRL------AATRIESIAPTA 114 Query: 125 EAVPATDSPSHSLNIQNT 142 E P TD + + Sbjct: 115 ETAPDTDRSQAVETSRPS 132 >UniRef50_B1HYB3 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=B1HYB3_LYSSC Length = 233 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + + +I+ +G + + RL LL + ++G+VLS++++ + VW Sbjct: 130 ENHLFTCSRFTFDIDAAEITVDGVREIISGRLFHLLKYLCDNAGQVLSKEQIYERVWGDC 189 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 + ++ V I +LR+ + + + P I TV GYKL+ V Sbjct: 190 LFDDNTVMVHIRKLREKI-EKNPGKPTCIITVRGIGYKLVGDV 231 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI-VT 64 V VG+ + + +N ++L L R +L + +G+ + R+++ VW VT Sbjct: 130 VSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGYDTAVT 189 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 N + I+ LR L+DN ++ P YI TV GY+ +VP Sbjct: 190 NRTIDFHIARLRSKLEDNPKE-PRYILTVHGSGYRFVVP 227 >UniRef50_B1T3M3 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T3M3_9BURK Length = 934 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + + G + + P ++ R + R D+L GEV+S+ E + VW S+ Sbjct: 6 RTCISFGSFRLYPDERRLERGDEIAEIGNRAFDILSLLVHRPGEVVSQKEFQEKVWPGSV 65 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYS 108 V + + I+ LRK L ++ S I ++ RGY + PV + + Sbjct: 66 VGDVNLRVQITALRKLLSEDAASSHG-IRSITGRGYCFVGPVTYTT 110 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q + +G+ + +Q++R+G + L P DLLV A+ +V +R+ L++ VW Sbjct: 137 QAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWGYR 196 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + +V + LR + + D + P + TV GYK P Sbjct: 197 HAADTRLVNVHVQRLRAKI-ERDPEKPEIVLTVRGVGYKAGPP 238 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 2/98 (2%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT-NH 66 G+ V + +++ G+++ L P+ DLL+ A + G SR EL+D +W + H Sbjct: 142 FGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSELLDVIWGYNFSGYEH 201 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 V I+ LR + + D +P+YI T GY+ + Sbjct: 202 TVNSHINRLRAKI-EPDMGNPIYILTTWGIGYRFNEDI 238 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + VG ++ P + G Q+ L P+ D+L A H +V + + + VW Sbjct: 132 SKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENIFQQVWADD 191 Query: 62 IV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + V I LRK L + D+ I TV GY Sbjct: 192 YFEGGNTVMVHIRTLRKKLGE-DKRKNKLIKTVWGVGYTF 230 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enteroba... 481 e-134 UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobac... 396 e-108 UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 T... 362 2e-98 UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax... 361 4e-98 UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliiv... 349 1e-94 UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobact... 341 5e-92 UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanell... 312 1e-83 UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas... 312 2e-83 UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vi... 308 2e-82 UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vi... 299 1e-79 UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobact... 268 4e-70 UniRef50_B7RJ24 Putative regulatory protein, possibly two-compon... 230 9e-59 UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein ... 221 5e-56 UniRef50_A3D2S0 Transcriptional regulator, CadC n=3 Tax=Shewanel... 213 1e-53 UniRef50_A5CFS9 Putative uncharacterized protein n=1 Tax=uncultu... 210 1e-52 UniRef50_A3UTR1 Transcriptional regulator CadC n=1 Tax=Vibrio sp... 208 5e-52 UniRef50_C1F5C9 Putative transcriptional regulatory protein n=1 ... 207 1e-51 UniRef50_Q087B1 Lysine decarboxylase transcriptional regulator, ... 199 2e-49 UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vi... 197 9e-49 UniRef50_Q1ISH8 Lysine decarboxylase transcriptional regulator, ... 195 4e-48 UniRef50_A6GR68 Transcriptional regulatory protein-like protein ... 194 8e-48 UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=... 190 1e-46 UniRef50_Q1Z6E8 Transcriptional activator of cad operon n=1 Tax=... 189 3e-46 UniRef50_Q0HTC3 Lysine decarboxylase transcriptional regulator, ... 188 3e-46 UniRef50_B1Y588 Transcriptional regulator domain protein n=1 Tax... 184 6e-45 UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax... 183 2e-44 UniRef50_Q89XL4 Transcriptional regulator n=1 Tax=Bradyrhizobium... 180 9e-44 UniRef50_Q1IKQ5 Lysine decarboxylase transcriptional regulator, ... 179 3e-43 UniRef50_B5WFU1 Transcriptional regulator, winged helix family n... 173 1e-41 UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanel... 172 4e-41 UniRef50_B2T985 Transcriptional regulator, winged helix family n... 172 4e-41 UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Ta... 170 1e-40 UniRef50_Q1QIX2 Lysine decarboxylase transcriptional regulator, ... 169 2e-40 UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium ... 169 3e-40 UniRef50_A4CDR3 Putative transcriptional regulator n=2 Tax=Pseud... 168 4e-40 UniRef50_A3WEA4 Adenylate cyclase n=1 Tax=Erythrobacter sp. NAP1... 168 5e-40 UniRef50_B2JV05 Transcriptional regulator, winged helix family n... 168 6e-40 UniRef50_Q1MK13 Putative transcriptional regulator n=1 Tax=Rhizo... 167 1e-39 UniRef50_B2TAV2 Transcriptional regulator, winged helix family n... 167 1e-39 UniRef50_Q89GS8 Transcriptional regulator n=1 Tax=Bradyrhizobium... 167 1e-39 UniRef50_B6A1A4 Transcriptional regulator, winged helix family n... 165 3e-39 UniRef50_D1TLZ3 Transcriptional regulator n=3 Tax=Burkholderia R... 162 3e-38 UniRef50_B1M5U0 Transcriptional regulator domain protein n=3 Tax... 162 3e-38 UniRef50_C3KKU6 Putative transcriptional regulator n=1 Tax=Rhizo... 161 4e-38 UniRef50_Q12QP4 Transcriptional regulatory protein-like protein ... 161 4e-38 UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n... 160 9e-38 UniRef50_Q3KE15 Putative transcriptional regulator n=3 Tax=Prote... 160 1e-37 UniRef50_B9BNS9 Transcriptional regulator n=2 Tax=Burkholderia m... 160 2e-37 UniRef50_Q1M6Q3 Putative adenylate cyclase/transcriptional regul... 159 2e-37 UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseud... 159 3e-37 UniRef50_B1YN09 Transcriptional regulator, winged helix family n... 156 1e-36 UniRef50_A6U8S7 Transcriptional regulator, winged helix family n... 156 2e-36 UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum... 155 3e-36 UniRef50_B8ESP8 Transcriptional regulator domain protein n=4 Tax... 155 3e-36 UniRef50_B0SVQ0 Transcriptional regulator, winged helix family n... 155 3e-36 UniRef50_C5D1G0 Transcriptional regulator, winged helix family n... 155 6e-36 UniRef50_A2W5F3 Putative uncharacterized protein n=1 Tax=Burkhol... 155 6e-36 UniRef50_B1KA17 Transcriptional regulator, winged helix family n... 153 1e-35 UniRef50_B8ESY3 Transcriptional regulator, winged helix family n... 153 1e-35 UniRef50_A5ED47 Transcriptional regulator n=1 Tax=Bradyrhizobium... 153 1e-35 UniRef50_Q01WH4 Transcriptional regulator, CadC n=1 Tax=Candidat... 153 2e-35 UniRef50_Q39G50 Transcriptional regulator, winged helix family n... 153 2e-35 UniRef50_Q89GU0 Blr6255 protein n=1 Tax=Bradyrhizobium japonicum... 153 2e-35 UniRef50_Q1MMK4 Putative transcriptional regulator n=1 Tax=Rhizo... 152 2e-35 UniRef50_Q98JB4 Adenylate cyclase n=1 Tax=Mesorhizobium loti Rep... 152 2e-35 UniRef50_B2JV11 Transcriptional regulator, winged helix family n... 152 3e-35 UniRef50_B2TAW9 Transcriptional regulator, winged helix family n... 152 3e-35 UniRef50_A4JSN6 Transcriptional regulator, winged helix family n... 151 5e-35 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 151 5e-35 UniRef50_C8SMB1 Transcriptional regulator domain protein n=1 Tax... 151 8e-35 UniRef50_A5UT44 Two component transcriptional regulator, winged ... 150 1e-34 UniRef50_D1C683 Two component transcriptional regulator, winged ... 150 1e-34 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 149 2e-34 UniRef50_A1TS46 Transcriptional regulator domain protein n=2 Tax... 149 2e-34 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 149 3e-34 UniRef50_Q48IP6 Transcriptional regulator, LuxR family n=1 Tax=P... 149 3e-34 UniRef50_C9Y6H6 Putative uncharacterized protein n=1 Tax=Curviba... 148 6e-34 UniRef50_D1TLX7 Transcriptional regulator, winged helix family n... 148 7e-34 UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiell... 148 7e-34 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 148 7e-34 UniRef50_C5SN08 Transcriptional regulator, CadC n=1 Tax=Asticcac... 147 7e-34 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 147 9e-34 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 147 9e-34 UniRef50_Q89ML1 Blr4182 protein n=1 Tax=Bradyrhizobium japonicum... 146 2e-33 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 146 2e-33 UniRef50_Q15YV6 Lysine decarboxylase transcriptional regulator, ... 146 2e-33 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 146 3e-33 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 145 3e-33 UniRef50_Q12RS3 Transcriptional regulatory protein-like protein ... 145 4e-33 UniRef50_UPI0001AF360D LuxR family transcriptional regulator n=3... 145 4e-33 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 144 5e-33 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 144 5e-33 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 144 5e-33 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 144 6e-33 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 144 9e-33 UniRef50_B1T3M3 Transcriptional regulator, winged helix family n... 144 9e-33 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 143 1e-32 UniRef50_B8G223 Two component transcriptional regulator, winged ... 143 1e-32 UniRef50_Q2KD09 Probable two-component response regulator protei... 143 1e-32 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 143 1e-32 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 143 2e-32 UniRef50_Q89XK9 Transcriptional regulator n=1 Tax=Bradyrhizobium... 143 2e-32 UniRef50_C6JFQ6 Putative uncharacterized protein n=1 Tax=Ruminoc... 143 2e-32 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 143 2e-32 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 142 3e-32 UniRef50_Q05943 Transcriptional regulatory protein glnR n=102 Ta... 142 4e-32 UniRef50_B2G959 Two-component response regulator n=13 Tax=Lactob... 141 5e-32 UniRef50_UPI0001C164FC Two component Transcriptional regulator, ... 141 5e-32 UniRef50_C6AYW7 Transcriptional regulator, winged helix family n... 141 5e-32 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 141 5e-32 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 141 6e-32 UniRef50_C5CZM5 Transcriptional regulator, winged helix family n... 141 8e-32 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 141 8e-32 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 140 9e-32 UniRef50_B5ZPU5 Transcriptional regulator domain protein n=11 Ta... 140 1e-31 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 140 1e-31 UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwe... 140 1e-31 UniRef50_B7GTW3 Response regulator receiver protein n=6 Tax=Bifi... 140 1e-31 UniRef50_Q3KEV6 Putative transcriptional regulator n=1 Tax=Pseud... 139 2e-31 UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 139 2e-31 UniRef50_C4IFN3 Transcriptional regulator n=15 Tax=Bacteria RepI... 139 2e-31 UniRef50_A6LVN5 Two component transcriptional regulator, winged ... 139 2e-31 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 139 2e-31 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 139 2e-31 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 139 3e-31 UniRef50_D1TNN3 Transcriptional regulator, winged helix family n... 139 3e-31 UniRef50_D1C280 Two component transcriptional regulator, winged ... 139 3e-31 UniRef50_A0NYE8 Putative regulatory protein, possibly two-compon... 139 3e-31 UniRef50_C8W6G9 Putative two component transcriptional regulator... 139 3e-31 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 139 3e-31 UniRef50_UPI0001AEBD7C two component transcriptional regulator n... 139 3e-31 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 139 3e-31 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 139 3e-31 UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 T... 138 4e-31 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 138 4e-31 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 138 4e-31 UniRef50_B8I014 Two component transcriptional regulator, winged ... 138 4e-31 UniRef50_Q3Z7C3 Transcriptional regulator, putative n=1 Tax=Deha... 138 4e-31 UniRef50_B2J8Q5 Two component transcriptional regulator, winged ... 138 4e-31 UniRef50_C2E0K8 Response regulator PhoP n=9 Tax=Lactobacillus Re... 138 5e-31 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 138 6e-31 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 138 6e-31 UniRef50_B4RU42 Transcriptional regulator n=2 Tax=Alteromonas ma... 138 6e-31 UniRef50_Q3Z7F8 Transcriptional regulator n=5 Tax=Dehalococcoide... 138 6e-31 UniRef50_Q24Q12 Putative uncharacterized protein n=1 Tax=Desulfi... 137 8e-31 UniRef50_D1CC84 Two component transcriptional regulator, winged ... 137 8e-31 UniRef50_C4L1R5 Two component transcriptional regulator, winged ... 137 8e-31 UniRef50_A7HMZ4 Two component transcriptional regulator, winged ... 137 9e-31 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 137 1e-30 UniRef50_C9LLD5 DNA-binding response regulator ResD n=1 Tax=Dial... 137 1e-30 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 137 1e-30 UniRef50_Q1AYG8 Two component transcriptional regulator, winged ... 137 1e-30 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 137 1e-30 UniRef50_C7N5H9 Response regulator with CheY-like receiver domai... 136 1e-30 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 136 1e-30 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 136 1e-30 UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerof... 136 1e-30 UniRef50_A4J267 Two component transcriptional regulator, winged ... 136 2e-30 UniRef50_B9XFI9 Two component transcriptional regulator, winged ... 136 2e-30 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 136 2e-30 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 136 2e-30 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 136 2e-30 UniRef50_Q12S47 Transcriptional regulatory protein-like protein ... 136 2e-30 UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax... 136 2e-30 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 136 3e-30 UniRef50_A9CWP6 Putative response regulator n=1 Tax=Shewanella b... 135 3e-30 UniRef50_D0XWC9 Transcriptional regulator, winged helix family n... 135 3e-30 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 135 3e-30 UniRef50_D2RD26 Transcriptional regulatory protein, C-terminal d... 135 4e-30 UniRef50_A5IKU4 Two component transcriptional regulator, winged ... 135 4e-30 UniRef50_C7G9Y4 DNA-binding response regulator n=6 Tax=Bacteria ... 135 4e-30 UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax... 135 4e-30 UniRef50_C6PZ92 Two component transcriptional regulator, winged ... 135 4e-30 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 135 4e-30 UniRef50_D2Q6K7 Response regulator-like transcriptional regulato... 135 4e-30 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 135 4e-30 UniRef50_A9AVR8 Two component transcriptional regulator, winged ... 135 5e-30 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 135 5e-30 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 134 5e-30 UniRef50_A4AL32 Putative two-component system response regulator... 134 6e-30 UniRef50_D1BL25 Two component transcriptional regulator, winged ... 134 6e-30 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 134 6e-30 UniRef50_Q067N9 Two component transcriptional regulator, winged ... 134 6e-30 UniRef50_C7TA80 Two-component response regulator n=2 Tax=Lactoba... 134 7e-30 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 134 7e-30 UniRef50_Q1ITK1 Lysine decarboxylase transcriptional regulator, ... 134 7e-30 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 134 8e-30 UniRef50_B4WMF1 Response regulator receiver domain protein n=2 T... 134 8e-30 UniRef50_A9KM61 Two component transcriptional regulator, winged ... 134 9e-30 UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingom... 134 1e-29 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 134 1e-29 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 134 1e-29 UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostrid... 134 1e-29 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 133 1e-29 UniRef50_D1YA87 Transcriptional regulatory protein, C-terminal d... 133 1e-29 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 133 1e-29 UniRef50_C6IXU0 Transcriptional regulator domain-containing prot... 133 1e-29 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 133 1e-29 UniRef50_D0WLW8 DNA-binding response regulator RegX3 n=1 Tax=Act... 133 1e-29 UniRef50_C4W819 Two component transcriptional regulator, winged ... 133 1e-29 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 133 1e-29 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 133 1e-29 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 133 1e-29 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 133 1e-29 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 133 1e-29 UniRef50_D1CH01 Two component transcriptional regulator, winged ... 133 1e-29 UniRef50_B0N9X7 Putative uncharacterized protein n=2 Tax=Clostri... 133 1e-29 UniRef50_B1T3K6 Transcriptional regulator, winged helix family n... 133 1e-29 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 133 1e-29 UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=... 133 1e-29 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 133 1e-29 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 133 1e-29 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 133 2e-29 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 133 2e-29 UniRef50_UPI00017F4CF5 two-component response regulator n=2 Tax=... 133 2e-29 UniRef50_B0MRC9 Putative uncharacterized protein n=1 Tax=Eubacte... 133 2e-29 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 133 2e-29 UniRef50_C3IWQ5 Two-component response regulator n=2 Tax=Bacillu... 133 2e-29 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 133 2e-29 UniRef50_C5AMC0 Transcriptional regulator, winged helix family p... 133 2e-29 UniRef50_C2EBW1 Two-component response regulator n=1 Tax=Lactoba... 133 2e-29 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 133 2e-29 UniRef50_A8MLN3 Two component transcriptional regulator, winged ... 132 2e-29 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 132 3e-29 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 132 3e-29 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 132 3e-29 UniRef50_A8W7F8 Putative regulator n=1 Tax=Streptomyces refuineu... 132 3e-29 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 132 4e-29 UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacte... 132 4e-29 UniRef50_C4L340 Two component transcriptional regulator, winged ... 132 4e-29 UniRef50_C9XSY6 Two-component response regulator n=15 Tax=Firmic... 132 4e-29 UniRef50_A4XGM2 Two component transcriptional regulator, winged ... 132 4e-29 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 132 4e-29 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 131 4e-29 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 131 4e-29 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 131 4e-29 UniRef50_UPI00019732E7 DNA-binding response regulator n=1 Tax=Cl... 131 4e-29 UniRef50_C4L703 Two component transcriptional regulator, winged ... 131 4e-29 UniRef50_D2TJ93 Lateral flagellar transmembrane regulator n=1 Ta... 131 5e-29 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 131 5e-29 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 131 6e-29 UniRef50_B5Y819 DNA-binding response regulator YycF n=1 Tax=Copr... 131 6e-29 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 131 6e-29 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 131 6e-29 UniRef50_B7K5A2 Two component transcriptional regulator, winged ... 131 6e-29 Sequences not found previously or not previously below threshold: UniRef50_B7VJ79 Transcriptional regulator n=6 Tax=Vibrionaceae R... 145 4e-33 UniRef50_Q89XL3 Transcriptional regulator n=1 Tax=Bradyrhizobium... 135 4e-30 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 132 3e-29 UniRef50_C8SQ16 Transcriptional regulator domain protein n=1 Tax... 131 5e-29 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 131 5e-29 >UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enterobacteriaceae RepID=CADC_ECOLI Length = 512 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 512/512 (100%), Positives = 512/512 (100%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR Sbjct: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP Sbjct: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS Sbjct: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH Sbjct: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL 300 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL Sbjct: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL 300 Query: 301 AIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASE 360 AIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASE Sbjct: 301 AIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASE 360 Query: 361 LLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY 420 LLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY Sbjct: 361 LLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY 420 Query: 421 QIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 480 QIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR Sbjct: 421 QIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 480 Query: 481 PGANTLYWIENGIFQTSVPYVVPYLDKFLASE 512 PGANTLYWIENGIFQTSVPYVVPYLDKFLASE Sbjct: 481 PGANTLYWIENGIFQTSVPYVVPYLDKFLASE 512 >UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobacteriaceae RepID=C5B7S6_EDWI9 Length = 548 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 263/542 (48%), Positives = 335/542 (61%), Gaps = 39/542 (7%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 MQ+ RVGEWLV + N+I+R GR L LEPRLID+L +FA H VLSRDELIDNVWKR Sbjct: 1 MQEQTFRVGEWLVLAADNKITREGRVLVLEPRLIDMLSYFAHHPDMVLSRDELIDNVWKR 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEE--------G 112 +IVTNHVVTQ ISELRK LKD ++P YI TVPKRGYKL+ VIW EE Sbjct: 61 NIVTNHVVTQCISELRKYLKDGRPEAPEYIVTVPKRGYKLVESVIWCGEESLEQLVAAVL 120 Query: 113 EEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPP-------------------------- 146 S P P+ + TPP Sbjct: 121 PAETPSFPAAAEAVTPSGSASPAFAAESGAVTPPPASTPLLMAQPASSCDTPVMPPTSAL 180 Query: 147 --EQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMV 204 + +P + ++ WVW F ++L +C A V + R P+ +LLNPRDIDI + Sbjct: 181 TADAAPTPRRLRSSSWVWVAFWVTLALCAAFVGLAVFSHRGPVVSHPMLLNPRDIDIRIQ 240 Query: 205 NK-SCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVN 263 C++W++ QLSY IG+ + +A LNT+STF+VHD+ NYN SSSGK+L I FVN Sbjct: 241 GGNRCSNWTN--QLSYVIGLSEDLAQGLNTYSTFLVHDQTNYNYGGKSSSGKSLYIEFVN 298 Query: 264 QRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQ 323 QR YRAQQCF+S++LVDNAD ML+KRY IT N L++Q D + S+ L P + Sbjct: 299 QRHYRAQQCFLSVRLVDNADNLVMLEKRYFITPDNLLSVQKDFINSIFTVLKVSMPPSLD 358 Query: 324 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 383 + + ++P +L +Y AH LL GD +SLN+AS+LL +I+Q P+F YA+AEKALVD Sbjct: 359 KRYETLMPTHSQVLQQYYHAHQLLLQGDSESLNQASQLLTQIIQQDPDFVYAKAEKALVD 418 Query: 384 IVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 443 I+ +S PL QL AL EI+++ P L II QI V L +GK ++ AIN G Sbjct: 419 ILLNSYQPLSAPQLTALRQEINDVEHNPLLQGTPIIQQIYTVDYLGQGKVAQACSAINKG 478 Query: 444 IDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVP 503 IDLEMSWLNYVLLGKVYE+KG N +AADAY+TAFNLRPG NTL WI+NG+FQT++ V P Sbjct: 479 IDLEMSWLNYVLLGKVYELKGQNNQAADAYITAFNLRPGHNTLDWIKNGVFQTNIERVAP 538 Query: 504 YL 505 YL Sbjct: 539 YL 540 >UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 Tax=Vibrionaceae RepID=Q5E341_VIBF1 Length = 541 Score = 362 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 125/540 (23%), Positives = 222/540 (41%), Gaps = 47/540 (8%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M ++ +W + N++ R R++++EPRLI+LL F AQHSGEV RDELI +VW Sbjct: 1 MVGICFQINDWTLVIEENKLYRQDREVSVEPRLINLLRFLAQHSGEVFCRDELIKHVWDG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 + VT+ VVTQSI ELRK L+D D+ Y+ TVPKRGYKL+ E+ Sbjct: 61 AFVTDQVVTQSIFELRKVLRDGRLDNTRYLVTVPKRGYKLVAETKQIRLEDTPYWKPCDT 120 Query: 121 PPIPEA--------------------------VPATDSPSHSLNIQNTATPPEQSPVKSK 154 EA PA NI N + ++ +S Sbjct: 121 FTSTEADENQNHNVELNTEEQEKEQDETAQLSFPAGPLTRAVTNISNQVSNEKKKQGESF 180 Query: 155 RFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSP 214 F W F L + V FS + + +D +++ + ++ + Sbjct: 181 SFLHRWKLLAFDFFLVGVLIAVIFSVTYQQT------TTHITKAVDTDLIEFTYHASRNS 234 Query: 215 YQLS--YAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQ-Q 271 + A G+ + L + + V + + + L VN R Q + Sbjct: 235 NNETEYLADGISQKLMADLASVGHYRVQLN------KTAFTTGILPGKAVNVRVEEQQNK 288 Query: 272 CFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILP 331 ++ ++ N + ++Y++TN N + + L +AL ++ L LP Sbjct: 289 TYLDVEYRSNISNRVLFSRQYLMTNANLEHVLRQSSQDLMRALGVQASEQDMNRLMLGLP 348 Query: 332 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP 391 LL +A+ ++ D K+ + +LL I + P Y +E + + +P Sbjct: 349 KEHGLLEMLVRANHFINQTDQKNFEKGIDLLENIALAEPNNDYVLSELYIAYNAYSALNP 408 Query: 392 -----LDEKQLAALNTEIDNIVTLPELNNLS-IIYQIKAVSALVKGKTDESYQAINTGID 445 + ++ L+ ++ L ++ L IY+ A+ A+ + +++ +N Sbjct: 409 ELELDENTAKIEKLSQDLQARYALSDVGVLPSRIYEALAMIAIKQDNKEDARAYLNLAFK 468 Query: 446 LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYL 505 S +Y+L GK+ E+ G +A ++Y AF + T EN F + + V ++ Sbjct: 469 NRESAFSYILEGKLAELDGDLDQAGESYSKAFFMDTSLETYMLAENLAFYSDLETVAYFM 528 >UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax=Vibrio RepID=C3NSU2_VIBCJ Length = 519 Score = 361 bits (926), Expect = 4e-98, Method: Composition-based stats. Identities = 124/511 (24%), Positives = 228/511 (44%), Gaps = 18/511 (3%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++ +W++ N++ R R+++ EPRLI+LL F A+H+GEV R+ELI +VW +IVT Sbjct: 5 CFQINDWVLCIDENKLYRQDREVSAEPRLINLLHFLAEHAGEVFGREELIQHVWDGAIVT 64 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYS-------EEEGEEIML 117 + VVTQSI ELRK L+D E++ Y+ TVPKRGYKL+ V +EE + Sbjct: 65 DQVVTQSIFELRKLLRDGREENLSYVVTVPKRGYKLVANVQRLDGNPYVSRQEESTASDV 124 Query: 118 SSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVA 177 I + A A Q P KS + L ++ I + +VA Sbjct: 125 CLADDIDDVEDAVPEIVFPAGPLTRAVCQSQQPKKSSKPNVSRWRLNLLNAIWIGLVIVA 184 Query: 178 FSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTF 237 + + +++ I+ + + A G+ + L S + Sbjct: 185 MGFFTVQQSQVRITQVVDTHLIEFKFQDGFH---AQALTHELADGIAQKLMADLTQVSDY 241 Query: 238 MVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNG 297 V GK++ + +Q F+ ++L +N+ + + ++Y + + Sbjct: 242 RVI-LGKTAYSSGILPGKSIMVRVNDQDG----HEFLDLELKNNSSDAVLFSRQYPLDSQ 296 Query: 298 NQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNR 357 + ++ + +AL P ++ + L P + A L + +A+ YL D + Sbjct: 297 HLASVLKSAEWDVMQALKIPNAEQQAQRLLVDFPRQPAALGLYVRANHYLNVADRPQFQK 356 Query: 358 ASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP---LDEKQLAALNTEIDNIVTLPELN 414 LL ++++ P+ Y +AE + V+ + P L++ ++ L+ ++ + P+ Sbjct: 357 GIYLLEQVLKLEPDNHYVQAELLIAYHVQQAISPDQALNQDRMLVLSEQLQQVSYSPQAV 416 Query: 415 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYL 474 IY+ A+ A V+ + + + + L S L+YVL GK E+KG A+DAY Sbjct: 417 VQPRIYEALALQATVENQVETATHYLAQAQGLRESVLSYVLQGKHAELKGDLDGASDAYS 476 Query: 475 TAFNLRPGANTLYWIENGIFQTSVPYVVPYL 505 AF + T EN +F +++ + + Sbjct: 477 EAFYMDTSLETYLLCENLVFHSNLKSIDYAM 507 >UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EKJ8_ALISL Length = 542 Score = 349 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 129/540 (23%), Positives = 226/540 (41%), Gaps = 45/540 (8%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M ++ +W + N++ R R++++EPRL++LL F AQHSGEV RDELI +VW Sbjct: 1 MVGLCFQINDWTLVIEENKLYRQDREVSVEPRLVNLLRFLAQHSGEVFCRDELIQHVWDG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIML--- 117 + VT+ VVTQSI ELRK L+D D+ Y+ TVPKRGYKL+ + EE E Sbjct: 61 AFVTDQVVTQSIFELRKILRDGRLDNARYLVTVPKRGYKLVADTQLVNFEETEFWKPCDY 120 Query: 118 ----------------SSPPPIPEAVPATDS----PSHSLNIQNTATPPEQSPVKSK--- 154 ++ + E V T+ PS L T + K+K Sbjct: 121 SKTVISSALNYAESGHAAHELVDEKVTTTEHDLSFPSGPLTRAITTISKDVEKEKNKQGA 180 Query: 155 RFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSP 214 F +F W + L+A + T + + I + IDI+++ + ++ + Sbjct: 181 SFNSFHRWKLLAFDAFLVCILIAV-IMSTTYQHTSTHI---TKAIDIDLIEFTFHASRNQ 236 Query: 215 Y--QLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQ-Q 271 A G+ + L + + V +D+ + + L V+ R Q + Sbjct: 237 KDETEFLADGISQKLMADLASVGNYRVQ------LDKTAFTTGILPGKAVDVRVEEQQNK 290 Query: 272 CFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILP 331 ++ ++ N + ++Y +T N + L AL + + L LP Sbjct: 291 TYLDVEYRSNTSNKVLFSRQYRMTPSNLERVLRQSSFDLMNALGVTVSEAQMDELMIGLP 350 Query: 332 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHP 391 LL QA+ Y+ D + + LL +I P+ Y AE + + +P Sbjct: 351 KEEGLLEVLIQANHYINQPDPRLFEQGIRLLEKISSEEPDNGYILAELYIAYNAFSALNP 410 Query: 392 -----LDEKQLAALNTEIDNIVTLPELNN-LSIIYQIKAVSALVKGKTDESYQAINTGID 445 + ++ L+ ++ + + IY+ A++A+ + + + + + Sbjct: 411 ELELSDNTMKIDNLSQDLVGKYGVATDEIWPARIYEALAMNAIKQDDKEAAQKYLTHAFA 470 Query: 446 LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYL 505 S +Y+L GK+ E+ G +A DAY AF + T EN F + + V ++ Sbjct: 471 RRESAFSYILEGKLAELNGNLDKAGDAYSRAFFMDTSLETYMLSENLAFYSDLETVAYFM 530 >UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobacterium profundum 3TCK RepID=Q1YZ13_PHOPR Length = 509 Score = 341 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 116/518 (22%), Positives = 212/518 (40%), Gaps = 26/518 (5%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + ++ W+ PS N+ + R + ++ RL +LL+F QH + SRDELI+ VW Sbjct: 1 MDKKRYKIDNWIFIPSENKCILDERSVVIDNRLSNLLLFLCQHPHQTFSRDELINEVWNG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEE---------- 110 S +T+ V+TQSI ELRK LK N YI T+PKRGYKL V + Sbjct: 61 SFLTDQVITQSIFELRKILKSNQRHPHGYIITIPKRGYKLDAEVEIQDDSLSTEDNNQDT 120 Query: 111 EGEEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLG 170 E +L++ EAV PS + + Q Q + F LL Sbjct: 121 ENAHALLNTAHTNKEAVREVPQPSSAPSYQKEREAAHQRRSSRGKLIAFC---CLLLVAT 177 Query: 171 ICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATS 230 + + ++R ++ L P I++++ K ++ + P IG + + Sbjct: 178 LASLFYYVKTPESRATSTRKFSSLEPSVINVSI--KIDSNTTDPKTTRIEIGAINSLLND 235 Query: 231 LNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDK 290 L F + N +GK+L+ + + + ++ ++ +N LD+ Sbjct: 236 LQYNKNFRL----VRNTTPSPVAGKSLTFHLLEENGKK----YIDVEYYNNISNFMHLDR 287 Query: 291 RYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHG 350 +Y+I + L +L +L AL+ PQ+ ++ +P L QA + + Sbjct: 288 KYLINENDLLLTIKQMLTNLLHALHINVPQQTIDSALSEMPTNPQALELTMQAIGIVFNN 347 Query: 351 DDKSLNRASELLGEIVQSSPEFTYARAEKALV--DIVRHSQHPLDEKQLAALNTEIDNIV 408 +D +A L + + P+ Y A + ++ S +D + ALN + Sbjct: 348 NDADKLKALTLYQQALDIEPDNHYLIAMNYIYKMTLLYISNTGIDNDKKEALNNTLMAQK 407 Query: 409 TLPELNNLS-IIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNR 467 ++ + S +++ A+ AL T E+ Q + + + + +L K+ E G Sbjct: 408 SMLLSDPQSNKVHEAFALLALTTNNTAEAQQHLEKIHYNQQTVMTLLLNAKLAETFGNTA 467 Query: 468 EAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYL 505 A++ Y A + E +F + + + L Sbjct: 468 SASEYYYQALHKSGSVRVFEVAETLVFYSDLSDIKKKL 505 >UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CR40_SHEPW Length = 512 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 123/514 (23%), Positives = 222/514 (43%), Gaps = 32/514 (6%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + R+ W P N++ + +++ ++ RL +LL+F + LSRDE+ID+VWK Sbjct: 1 MHKQSYRIDNWFFVPHENRLVLDEQEILIDNRLSNLLLFLCDNPRTTLSRDEIIDHVWKG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 SI+T+ V+TQ+I ELRK LK N++ YI TVPKRGYKL V +E + +L++ Sbjct: 61 SILTDQVITQAIFELRKILKTNNQHLQGYIITVPKRGYKLDTDVEVVNEVKTAPTVLNAA 120 Query: 121 PPIPEA-------VPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICV 173 I E+ A ++ H +N KS RF++ L+++ + V Sbjct: 121 HKIVESNAEQKSNFAAKEATKHKKATENEEPTTAVESAKSVRFSSSLAIVGALIAVAVLV 180 Query: 174 ALVAFSSLDTRLPMSKSRI---LLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATS 230 V F+ D S + L PR I+ ++ N N+ GV V Sbjct: 181 --VFFNRADIGKQPSVEHVVYADLEPRVIEASIDNSLANASLQN-------GVIFKVIEY 231 Query: 231 LNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDK 290 L + V ++N + + K LS + +++I+ + LD+ Sbjct: 232 LKYNVNYRV----SFNPKDHLIAAKKLSFIVTRENGID----YVNIEYFNKISNYQHLDR 283 Query: 291 RYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHG 350 +Y I+ + +++ + A N + + + + +P A L +A LH Sbjct: 284 KYPISEKHLKHSIKLMIDDVLDAFNIDIAKSEIDLVLRDMPEEPAALALSLEAIG-TLHS 342 Query: 351 DDKSLNRASELLGEIVQSSPEFTYARAEKALVD--IVRHSQHPLDEKQLAALNTEIDNI- 407 DK + A +LL + ++ P Y + + + I + L + +LN++ + I Sbjct: 343 YDKQFD-AIDLLAKALEIDPTSHYLLSMNYIYNMTIAYLGKSNLSIDSINSLNSDFEQIL 401 Query: 408 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNR 467 + E +Y+ A+ AL K E+ Q +N + + Y+L K+ E G Sbjct: 402 PQISESPESFKVYEAMALHALSKDLPIEAVQHLNQIPHTHNTIMTYILRAKLAESFGNPA 461 Query: 468 EAADAYLTAFNLRPGANTLYWIENGIFQTSVPYV 501 A + Y A + L + E+ +F + + + Sbjct: 462 SAEEFYYQALHESGTPRVLDFAESLLFYSDLSKM 495 >UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas RepID=A4SQG5_AERS4 Length = 511 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 123/516 (23%), Positives = 210/516 (40%), Gaps = 28/516 (5%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + V + +W + N + R R++ LEPRL++LL F A H+G V RD LI VW Sbjct: 1 MSESVFEIHDWTLRVDDNMLCRPDREVYLEPRLVNLLRFLACHTGTVFGRDALIKEVWDG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 + VT+ VVTQSI ELRK LKD D+ YI TVPKRGYKL+ V + ++++ Sbjct: 61 AEVTDQVVTQSIFELRKILKDGRFDATDYIVTVPKRGYKLVASVRPL---QVVSLLMADE 117 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFW---------VWFFFLLSLGI 171 P+P P S + P +P + T W + + Sbjct: 118 QPVPAVNPTLSDLSPPATADDDDALPNAAPFPAGPLTRAISAHAKDARSRWKMVSFDIFV 177 Query: 172 CVALVAF-SSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATS 230 V LVA S L + + +L+P + + ++ + A G+ + Sbjct: 178 AVILVAIVSMLSYQHASPQVHTMLDPNLLVFRFHSGMDDNNE---NVRLADGITRALMGE 234 Query: 231 LNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDK 290 + + V N+ GK LS+ RQ R ++ ++ + + Sbjct: 235 VAAVTPLRVQYG-ATNLMGGILPGKELSVRV--SRQPRG--TYLDLEYRNINTNRVLFSH 289 Query: 291 RYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHG 350 +Y ++ A+ + L +AL+QP P L +A Y+ Sbjct: 290 QYQLSRHKVHAVLQASSQDLLRALDQPDVLPGM-----GWPTDDTSLMAMMEAQYYINSQ 344 Query: 351 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDE-KQLAALNTEIDNIVT 409 D +L R LL + P+ AE+ L + E + L + T + ++V Sbjct: 345 DPVALKRGIALLDNSLFVQPDQPLLLAERYLAGEALATLAGKSESEHLMGIGTHLASVVQ 404 Query: 410 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREA 469 ++ + +++ + A++ + ++ Q + S L Y+L GK+ E+ G A Sbjct: 405 -SDVVVPARVWEALTLQAILNNQPQQASQLLAQAASRGRSVLYYILQGKLAELDGRPEAA 463 Query: 470 ADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYL 505 DAY AF + T + F +++ + P L Sbjct: 464 GDAYSQAFLMEATEQTYLLCQQLGFYSNMETLTPAL 499 >UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vibrio shilonii AK1 RepID=A6CY17_9VIBR Length = 529 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 121/538 (22%), Positives = 201/538 (37%), Gaps = 46/538 (8%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+ ++ +W+ P ++ +G + ++ RL L F ++ V SRDELI+ VW S Sbjct: 4 QKVQFKIDDWVFYPYEDKFVLHGEDIVIDNRLSKLFHFLCENPDTVFSRDELINEVWNGS 63 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIML---- 117 I+T+ V+TQ+I ELRK LK + YI TVPKRGYKL V E I Sbjct: 64 ILTDQVITQAIFELRKILKQHGNHPYGYIVTVPKRGYKLDATVEKVIETPQPVIETTDSV 123 Query: 118 ----------SSPPPIPEAVPATDSPSHSLNIQNTAT---PPEQSPVKSKRFTTFWVWFF 164 S+P +P + + P Q+ K F W+ Sbjct: 124 SEKIDVLRDESAPETTDIVLPEAGASTEVEASAAEPVRQRPAMQTATKKTGFRKRWIATA 183 Query: 165 FLLSLGICVALVAFSSLDTRLPMSK--------SRILLNPRDIDINMVNKSCNSWSSPYQ 216 LL +GI V +K S + L PR I + + + + Sbjct: 184 ALLVIGIGVGASYLHVKQNDRAAAKVIEPIATPSYLSLEPRYIHVILEDGV-------LR 236 Query: 217 LSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSI 276 +G + L T+ + V D P+S + F + R Q ++ I Sbjct: 237 DDLKVGFTKKLLELLKTYKDYRV------IYDGPASKVAANELKFAASK--RDNQDYIEI 288 Query: 277 KLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGAL 336 + V+ G LD++Y +T L+ L + N + + L LP+ A Sbjct: 289 EYVNRISGHKHLDRKYRVTEDMLKPSLKKSLDDLLDSFNIEIEKSLIADLVDELPNEAAS 348 Query: 337 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDE-- 394 + + + H D + RA EL+ E + SP+ Y A + ++ R P Sbjct: 349 IESALTSIGASYH--DYTHTRAIELIEEAKKLSPDNPYVVATGYIFNVSRMYLDPPHNMA 406 Query: 395 KQLAALNTE--IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLN 452 + L LNTE + + + A+ AL + ++ + T + Sbjct: 407 QYLEQLNTETLLKFEQFASANQTTPRVLEASAMMALTNDEPLQAKTILQTIPHERRTVFF 466 Query: 453 YVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFLA 510 Y+L K E+ G A + Y A L E F + + + ++ L+ Sbjct: 467 YILNAKASELTGNRDAAEEFYYHAVLESSTIQVLNLSEVLFFNSDLSDIKKKVETSLS 524 >UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vibrionales RepID=A5L3N2_9GAMM Length = 492 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 102/508 (20%), Positives = 180/508 (35%), Gaps = 22/508 (4%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V EWL P+ QI R +T++ RL LL F + G+ +RDELI+NVW Sbjct: 4 KNSCFSVDEWLFVPNEGQILFAERTVTIDKRLTKLLEFLCLNPGQTHTRDELINNVWSGM 63 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 I+++ VVTQ++ ELRK LK N + YI TVPKRGYK VI E + + P Sbjct: 64 ILSDQVVTQAVFELRKVLKQNSQQHNSYIITVPKRGYKFEADVIQSKIETDQ-VAEPEPS 122 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 + P P+ L + + K LL I V + Sbjct: 123 TAQPSDPEQSPPADKLPQTDVS---------EKTKPNKRNLMIGLLLGAIVVMESGYILY 173 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHD 241 ++ + + G L+ +S + Sbjct: 174 SASSSTPDEKVAPATQLRHYEFRYVMLDISDDVKNDPVLYGTITKFIEYLSAYSGIRI-- 231 Query: 242 KINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLA 301 EP + + F R + ++++ +N + L++RY Sbjct: 232 ----VHSEPLQKIAAIKLTFGTSRSRDGKHTRLTMRYHNNISDLSHLNRRYPTELPELHH 287 Query: 302 IQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASEL 361 +++ + AL P+ LP L L ++ L + Sbjct: 288 TLYRMVDDILDALYIKVPKEELTESISQLPMAPDALKYTLSGLGVLY--NEAELPMVMDY 345 Query: 362 LGEIVQSSPEFTYARAEKALVDIV--RHSQHPLDEKQLAALNTEID-NIVTLPELNNLSI 418 + Q+ P + ++ ++ ++ +A LN E + L E L+ Sbjct: 346 FAKAQQADPSNDLVFVANYIGKVMNTFYASSGSKKQAIAELNQEAKPRLERLLEEGKLAR 405 Query: 419 IYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN 478 Y A+ AL + +++ + + + S L Y+LL K E +G A + Y A Sbjct: 406 AYDANAIIALSEDDPEKAMKILLSMPPQNQSILTYLLLAKAEESRGNAGAAKELY-KATQ 464 Query: 479 LRPGANTLYWIENGIFQTSVPYVVPYLD 506 + F +++ ++ L+ Sbjct: 465 GNSSLKAIQMASPLFFDSNLEPLLKELE 492 >UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobacterium angustum S14 RepID=Q1ZPR1_PHOAS Length = 481 Score = 268 bits (684), Expect = 4e-70, Method: Composition-based stats. Identities = 120/512 (23%), Positives = 220/512 (42%), Gaps = 58/512 (11%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 ++ + L+ + N + ++G+ LEPR+ LL F AQ+ G V +RDELID VW ++V++ Sbjct: 6 FKINDCLLITTENSLKKSGKTYILEPRITKLLSFLAQNQGIVFTRDELIDEVWDGAVVSD 65 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 VVTQSI ELRK LK DED +I T+PKRGYKL V + L E Sbjct: 66 QVVTQSIFELRKILKKLDEDH--WIITIPKRGYKLDADVQQIYIDPNTGFKLEEFHSSNE 123 Query: 126 ----------AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVAL 175 A PA N P S S W++ +LS+ + + Sbjct: 124 HTNDNSNLGTAFPAGPMTRAFSKPDNDIPPASVSNKISNLMLNHWLFDVGILSMLVLTLV 183 Query: 176 VAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFS 235 A + + P+ + L NPR I+I + + S +S + ++ ++L +++ Sbjct: 184 FASWANNDNAPI---KDLKNPRQINIEITSSSNQLYS----------IAKMIESTLFSYT 230 Query: 236 TFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVIT 295 + ++ S +GKTLS+ + Q + I L +N + K ++ Sbjct: 231 DYTS------SLHPNSEAGKTLSLYISDNNQ-------LHIDLYNNISHRSDFKKSLLLQ 277 Query: 296 NGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHG----D 351 + N LL L + L ++ ++T+ + YL D Sbjct: 278 SDKLYTSLNHLLNELIQTLTHD---------HQVTVTNAPIITDSTLLYKYLSLPDLIDD 328 Query: 352 DKSLNRA-SELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 410 + +N++ + +++ +SP+ +Y A++ + + + + +N D + + Sbjct: 329 EGQVNKSYLTDINKLILNSPKNSYLLAKRYIGYAIILTLDNKETSMPNLMNYARDLVKNI 388 Query: 411 PELNN----LSIIYQIKAVSALVKGKTD--ESYQAINTGIDLEMSWLNYVLLGKVYEMKG 464 N+ S A++ L +G D + Y +++ + S L Y+L GK+ ++K Sbjct: 389 SLQNSLLSLPSQTLNALALNQLYQGNIDLSQHYLSLSRQQSKQSSALYYILQGKILDIKN 448 Query: 465 MNREAADAYLTAFNLRPGANTLYWIENGIFQT 496 +++A + Y A L P T +N +F + Sbjct: 449 QHKQANENYSIAKYLAPSYETEVLCKNLVFHS 480 >UniRef50_B7RJ24 Putative regulatory protein, possibly two-component response regulator n=1 Tax=Roseobacter sp. GAI101 RepID=B7RJ24_9RHOB Length = 521 Score = 230 bits (586), Expect = 9e-59, Method: Composition-based stats. Identities = 77/517 (14%), Positives = 151/517 (29%), Gaps = 45/517 (8%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 R + + + GR +EPR LL H ++++DE+++NVW IV+ Sbjct: 2 RYRFDHFTLDIDRGILLEGGRDAPIEPRAFKLLALLVTHHDRIVTKDEIVENVWDGRIVS 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + I RK L D D Y+ T+ RG + + ++ E + P P Sbjct: 62 DAAIATVIKTTRKVLSD-DGVGQKYLRTIRGRGVRFVGTLMPSLAAEARKPETDQAQPAP 120 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTR 184 A+ L Q S + L L + F +T Sbjct: 121 -VQTASRPTIAILPFQMVGYSETFSAIADAIPAELISCLSRLRWLAVVSRGSTFRFRETE 179 Query: 185 LPMSKSRILLNPRDIDINMVNKSCN--------SWSSPYQLSYAIGVGDLVATSLNTFST 236 ++ L + +V + S + + ++ ++ T + Sbjct: 180 PDLATIHAALGAKYCLTGLVEIFGSVIAVSVELSDTRSQDVVWSERFSGTISDINETRND 239 Query: 237 FMVHDKINYNIDEPSSSGKTLSIA------FVNQRQYRAQQCFMSIKLVDNADGSTMLDK 290 + H + P + K + + Q + DN ++ +K Sbjct: 240 IVTHVISALELHVPLNEAKRARLRPPENLDAWSIYHLGLQHMY-RFNKTDNLIAASHFEK 298 Query: 291 RYVITNGNQLAIQNDLLESLSKAL---------NQPWPQRMQETLQKILPHRGALLTNFY 341 ++ A S A +R E ++ P Sbjct: 299 ATILDPEFARAHAARSFTSFQSAFLKYSTDAAEEASNTRRFAEKAVELDPIDPFANFTLG 358 Query: 342 QAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALN 401 +AH + + ++ SP F A+ + L L Sbjct: 359 RAHWLISDP-----EAGMPWIDRAIELSPNF----AQGFYAHGWGDVMAGRGVEALQQLQ 409 Query: 402 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVY- 460 T I P L + ++ L + + G + ++ L+G + Sbjct: 410 TAISLSPLDPFLYA---MQSACGLAYLQMEDYENAVLWAEKGA---RAPGSHFLIGAIAA 463 Query: 461 ---EMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 494 ++ G +A T + RP A+ + F Sbjct: 464 MICKISGDEEKARRWAKTTKDRRPDASVEMFFAAFPF 500 >UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21GQ2_SACD2 Length = 425 Score = 221 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 77/455 (16%), Positives = 149/455 (32%), Gaps = 62/455 (13%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + + +I+ G +++EP++ D++V+ ++ ++SRDEL + +W V++ Sbjct: 3 FHFNDVEIDTKQYRITCAGLTVSVEPKVFDIIVYLIENRNRLVSRDELFEKIWDARAVSD 62 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 ++ I RK+L D D + I TV RGY+ + V S E I SS P Sbjct: 63 TTLSNHIKSARKALGD-DGEQQHTIKTVRGRGYQFIAEVS-VSALTDEPIAASSSAPSER 120 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 + P + RF F + + L+ + +R Sbjct: 121 SAPVQST---------------------NRFQPKATIAFLIFGCLCVLTLIGYLYNLSRT 159 Query: 186 PMSKSRI-------------LLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLN 232 + N I +V S +S +A + L Sbjct: 160 IEPQQPNLSPLNPTLSPPLHAQNTTIPYILVVPFSVSSGEQSKWEPFADQTTRELIQYLR 219 Query: 233 TFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQY--------------RAQQCFMSIKL 278 S V S + KT + Q +S++L Sbjct: 220 KISGIRV------VPPPSSFTFKTNKVRAHITNQLPEVNYIIDGVVKEDGNGNFRISVEL 273 Query: 279 VDNADGSTMLDKRYVI--TNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGAL 336 + D + + Y I NQ +Q ++ S++ +L + + TL ++ Sbjct: 274 ENITDNTLVWSNNYDIKVNENNQFKVQAEIAASVTASLQVEVLEAERRTLAQVPTSSVTA 333 Query: 337 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD-IVRHSQHPLDEK 395 + Q L S+ +A L + ++ P F A K+ + + Sbjct: 334 YELYVQGQYQLGAMTHTSVLQAITLFSDAIEIDPNFEEAYIAKSDAFRTIMTWFAKPKDL 393 Query: 396 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 430 + + ID I P N + + ++ + Sbjct: 394 LPKVITSSIDVIDINP---NSARAHSSLGLAYVHA 425 >UniRef50_A3D2S0 Transcriptional regulator, CadC n=3 Tax=Shewanella RepID=A3D2S0_SHEB5 Length = 1067 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 84/463 (18%), Positives = 160/463 (34%), Gaps = 28/463 (6%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M GEW + PS N + + LEP+ +D+L+F Q +GEV+S DE++ + W Sbjct: 5 MSDSTFFFGEWQINPSANSLLLGKQVKQLEPKAMDVLLFLCQRAGEVVSSDEIVSHCWPG 64 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 ++ + + I++LR++L D+ D P+YI T+ KRGY+ + V + E S Sbjct: 65 VDTGDNPLHKIINQLRRALDDSATD-PIYIETIRKRGYRTLAEVRFPIGHEATACPQSWQ 123 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 P P + S + + S + ++ F L LG Sbjct: 124 GGSP--FPGLQAYSANYAEVFFGRSEQISTLLNRISQQIIYGRAFCLVLG---------- 171 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 S + P + N + S + G L+ + + ++ Sbjct: 172 PSGSGKSSLINAGVVPNLMKGGGYNGIGVASFSSLDFADVSK-GQLLTDLASAMLDWEIN 230 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQC--FMSIKLVDNADGSTMLDK-----RYV 293 D + TL++ V Q QC ++++ + +D+ Sbjct: 231 DTPVFEGMS----ADTLAVQLVEDIQGVINQCTQALNVQPFTQPFFALFIDRLEVLLSSP 286 Query: 294 ITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLH-GDD 352 + + + + +LLE L+ + + +L +L+ + + L Sbjct: 287 LFSDTERTVFVELLEQLATSKAVIIISACRNDFYPLLVGYPSLMAGKSRGAHFDLAPPTR 346 Query: 353 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 412 L + L S E A + + D + + + + Sbjct: 347 TELLQMIRLPAVAANLSWEVDSETAMPLDEMLCSDAASNPDALPMLQYTLQALYLQRSAD 406 Query: 413 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 455 L +Y GK + QAI+ D E + L +L Sbjct: 407 DKLLVSVYHALGGIEGAIGK--NAEQAISHLSDAEKASLPRIL 447 >UniRef50_A5CFS9 Putative uncharacterized protein n=1 Tax=uncultured marine microorganism RepID=A5CFS9_9ZZZZ Length = 627 Score = 210 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 67/486 (13%), Positives = 150/486 (30%), Gaps = 57/486 (11%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 +G W V+P + + + + +EP ++++LV A +G+V++ D++++ VW Sbjct: 11 FELGPWQVSPDLGLLRQGETEQRVEPMVMNVLVLLASGNGDVVTTDQIVEAVWGGRSTAT 70 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + Q I LR+ L D D P +I T+PK GY+ Sbjct: 71 EAIVQKIKVLREKLGD-DPKDPKFIQTIPKIGYR-------------------------- 103 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 V + W+ FF + V ++ ++ + Sbjct: 104 --------------------VVCPVVVPEVVEPEWLRSFFPAYIWPIVGGISAIAVIAIV 143 Query: 186 PMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINY 245 + L + ++ + S+ + G + + ++L+ + + Sbjct: 144 VLGNRSGRLQRLESVSSVAVCPFENMSTQADEPFVFGFREQLISTLSREPNLRI---VKA 200 Query: 246 NIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQND 305 + + + G+ L + V RA ++ DG + + Sbjct: 201 SCKDDTVPGEQLIDSIVTGSVQRAGGRVRITAKLEANDGEIFWSESIDGAAEEVEEVFGL 260 Query: 306 LLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEI 365 ++ + E P + + LNRA + + Sbjct: 261 HERVANRVRSAILGDSETEVSASSSPVNIEAYDLYLLGDFAFSKRSEPELNRAVDFFNKA 320 Query: 366 VQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAV 425 + P F A KA ++ P + + + E + + + + Sbjct: 321 IDQDPNFGPAYLGKANSYLLLADYDPAARESMYEMAIETADSGAELDPGIRDAVRTVYGF 380 Query: 426 SALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMK----GMNREAADAYLTAFNLRP 481 + E+ +A + I S Y Y + G+ +A + + A + Sbjct: 381 VDTKRANWAEAAEAFDIAI---NSATVYPTAHHWYSIFLENVGLLDQALEQAIIAREMDT 437 Query: 482 GANTLY 487 + L Sbjct: 438 ASPILN 443 >UniRef50_A3UTR1 Transcriptional regulator CadC n=1 Tax=Vibrio splendidus 12B01 RepID=A3UTR1_VIBSP Length = 652 Score = 208 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 116/322 (36%), Gaps = 20/322 (6%) Query: 183 TRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDK 242 + S + L PR I +++ + + ++ G+ + + L T+ F V Sbjct: 340 HKAHESVHYLSLEPRYIYVSIDD-------NLKTDAFKRGIIHKLMSYLTTYRDFRV--- 389 Query: 243 INYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAI 302 +DE I+F + + + ++ I + L + Y+I + Sbjct: 390 ---VVDETLVPNSANVISF--KSEIDGDREYLDITYFNRISNFRHLGRDYLIDPASLHTT 444 Query: 303 QNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELL 362 +L+ L + N + + + LP + L +A D++ + Sbjct: 445 MRSMLDDLLDSFNLDIQKSILKQQISELPKQEEALKLTLEALGLTFMTLDRT--DTLSKI 502 Query: 363 GEIVQSSPEFTYARAEKALVDIV--RHSQHPLDEKQLAALNTEIDNIVTLPELNNLS-II 419 + + + + + + + ++ + KQ+ ALN + + + N S + Sbjct: 503 AQANELESDNHFVMSNRYMYELADIFIMRSKNKNKQVEALNKKFKKQLLNAQNNANSYRV 562 Query: 420 YQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 479 Y A L + +++ ++ E S ++ ++L K+ E +G A + Y A Sbjct: 563 YDALAAYFLTEDNPEQAEYYLSLIPRNEYSVMSMIILAKIEESQGNPSMAEEYYYEAILE 622 Query: 480 RPGANTLYWIENGIFQTSVPYV 501 L + F++++ + Sbjct: 623 SGHPVVLKVAQTLFFKSNITEI 644 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 6/165 (3%) Query: 1 MQQPVVR--VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW 58 M++ ++ WL P +++ N + ++ RL LL FF Q+ V SRDELI+ VW Sbjct: 1 MKKERIQYSFDVWLFIPDEDKLIMNDEDVIIDNRLSKLLNFFCQNPKIVFSRDELINEVW 60 Query: 59 KRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVI----WYSEEEGEE 114 SI+T+ V+TQ+I ELRK LK + S +I TVPKRGYKL V V + Sbjct: 61 NGSILTDQVITQAIFELRKILKAAERHSMGHIITVPKRGYKLDVDVHKTILVPASITTNT 120 Query: 115 IMLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTF 159 + ++ P+A + S + ++ + + Sbjct: 121 VSVADMNHAPKAFGSFPSTQSDAPDTSPVLDEDKKQQVEPKAESV 165 >UniRef50_C1F5C9 Putative transcriptional regulatory protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F5C9_ACIC5 Length = 692 Score = 207 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 73/519 (14%), Positives = 164/519 (31%), Gaps = 47/519 (9%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V +L +++RN + + +++DLL + SG +++R+++ +W Sbjct: 5 EPTVFSFAAYLYDAENRRLTRNQVPIRINRQMLDLLDLLVRSSGRLVTREQIQKTLWPGQ 64 Query: 62 IVT--NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVI-------------- 105 + +T +++ LR L DN P YI +VP+ GY+L+ P+ Sbjct: 65 FLDNSEKRITNAVARLRHILGDN-SSRPRYIESVPRTGYRLIAPIRVVELARGARPAPAA 123 Query: 106 --------WYSEEEGEEIMLSSPPPIPEAVPATDSPS------HSLNIQNTATPPEQSPV 151 E E++ +P + DSPS PP + Sbjct: 124 LLPPAVETAVPAEGLPEVLPDAPSALSGTTATADSPSLSEDREAQTRSAGLLQPPGSASA 183 Query: 152 KSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSW 211 + G+ + L ++ RL K R P +I + + + Sbjct: 184 PISGLPRALGRRGVFYAAGVLLLLAGMLAMAPRL---KRRPAAAPAEITLGIAPFQASGP 240 Query: 212 -----SSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQ 266 + ++L + L + S + ++ + ++ L + + Sbjct: 241 GAASLAQSFRLDLTDTLSQLPHLDVRA-SNSLDLLNLDRSTFRAQATHLGLDVLILGSFT 299 Query: 267 YRAQQCFMSIKLV--DNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQE 324 + +C + ++LV ++ ++ ++ ++ + + + ++L Sbjct: 300 LQNNECHVQLELVRGNDLSHIASFNRT--VSRYELADLRTMIQDEVYRSLKLSPVSGGLP 357 Query: 325 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 384 T + +A + SL A E + P F A A +A I Sbjct: 358 TTPIDGTSNPLAYDAYLRAQYHFSQLTGNSLVLAVAEYNEAIADDPNFVDAYAGQARAYI 417 Query: 385 VRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK--GKTDESYQAINT 442 + E + L + L + + + ++ + Sbjct: 418 FLVQNDRIGESEGYTLARQ-AARHALALDAHTAEAHADLGFIYFLQSWNLKAGERELRQA 476 Query: 443 GIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 481 + L +Y +G EA A + P Sbjct: 477 ISANPDDPFYHQGLALIYSDEGRFHEAEAQINQALAVDP 515 >UniRef50_Q087B1 Lysine decarboxylase transcriptional regulator, CadC n=9 Tax=Shewanella RepID=Q087B1_SHEFN Length = 1102 Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 75/469 (15%), Positives = 167/469 (35%), Gaps = 31/469 (6%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M G+W + P N + +LEP+ +D+L QH GEVL+ D++I++ W Sbjct: 1 MNDSTFFFGDWQINPQSNSVQSGDVIRSLEPKAMDVLRLLCQHQGEVLAADDIINHCWNS 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV----PVIWYSEEEGEEIM 116 + ++ + + I++LRK+L D +P YI T+ KRGY+ + P+ +++ ++ Sbjct: 61 IAIGDNPLHKVITQLRKALGDQ-ASNPQYIETIRKRGYRTIASVEFPIGHHTKVTTQQWQ 119 Query: 117 LSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFF-------FLLSL 169 +SP P A DS + T + + + F + L++ Sbjct: 120 GASPFPGLRAFDTNDSNVFFGRSEQVDTLLNRITKQVEFGRAFCLILGPSGTGKSSLINA 179 Query: 170 GICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCN--SWSSPYQLSYAIGVGDLV 227 GI L++ + + + + + L +++ + W Q + D++ Sbjct: 180 GIMPNLMSKNGFNGVGVIDNANLDLADVTKGRLIIDIASAMLDWEINDQAVFTDCSADML 239 Query: 228 ATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTM 287 A L ++ + + + + S+ D + Sbjct: 240 ANKLQNDINAVIEYC---------QLALAKYSSINDDNAPKYSRPHFSL----FIDRLEI 286 Query: 288 LDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYL 347 L + T + + D+LE+L+ + + + +L+ + Sbjct: 287 LLASPLFTESERNNVL-DILETLAVSGVVLMISACRNDFYPQVVSHPSLMAGKANGSHFD 345 Query: 348 L-HGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 406 L L + L + A D + S+ + L L + + Sbjct: 346 LSAPTRAELMQMIRLPANAANLTWTLDPDTAMPL--DEILCSEAASNPDALPMLQYTLQS 403 Query: 407 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 455 + + NN ++ ++ + + + +N + E + L +L Sbjct: 404 LYLNKDDNNQLLVSVYHSLGGIEGAIGKNAEEVLNQLNNSERAALPKIL 452 Score = 53.7 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 45/359 (12%), Positives = 101/359 (28%), Gaps = 28/359 (7%) Query: 105 IWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFF 164 W +E + +L+ P+ EA ++ +L Q A Q+ K + Sbjct: 541 RWLAESKSSAYLLAEGKPLAEASTLLNNQLFNLEPQELAL--IQASSKQANIGRWRRRAV 598 Query: 165 FLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVG 224 L + + + VA S + L ++ MV + + ++ G+ Sbjct: 599 MLALVTLTLISVAMSVRSIEAETQAQQKRLAAENLLGFMVGEFADKMRGIGRMDLLDGIS 658 Query: 225 DLVATSL-------NTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFM--- 274 + ++ +F + + ++ + A + M Sbjct: 659 NKALEYFSDVSADDASYLSFEAQFQHSQTLEAMGEVAYSRGNTDEAHSALIAARERMLPL 718 Query: 275 ------SIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQK 328 ++ L+ + R + A Q + L+ + Sbjct: 719 LEIQPQNLNLLKTLGANAFWLGRLEYDKSDWAATQPWFEQYLTYSQAMYQYAPDDNDALM 778 Query: 329 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHS 388 L + L ++ ++ +L + + P + A+ A S Sbjct: 779 ELSYAQNSL-GSIHMKQQNFAAAREAFEQSLQLKQKALVQDPSNSKMIADVANAQSWIAS 837 Query: 389 QHPLDEKQLAALNTEIDNIVTLP---------ELNNLSIIYQIKAVSALVKGKTDESYQ 438 AA+ L L+ LS YQI A +G ++++ Sbjct: 838 AATAQGDITAAIQIHQQIQQQLSNQALEKQPYLLDRLSSSYQILANLLNYQGHQQQAFE 896 >UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KUS7_9GAMM Length = 615 Score = 197 bits (500), Expect = 9e-49, Method: Composition-based stats. Identities = 62/450 (13%), Positives = 142/450 (31%), Gaps = 64/450 (14%) Query: 99 KLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLN---IQNTATPPEQSPVKSKR 155 K + P E+E E ++P + P P + T P + V Sbjct: 173 KTVSPEQTAHEQETEIKPEATPNCSSDNDPLNQQPDPKSGHNYAASAPTNPSEKKVNKSS 232 Query: 156 FTTFWVWFFFLLSLGICVALVAFSSLD--------------------------------- 182 F + + ++GI + + + S Sbjct: 233 RLGFAIGALVIGAIGIALGVSWWGSPSSTDASNGVSVDNMTELFASENQSTEAIGKSNQT 292 Query: 183 --------TRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTF 234 + S + L PR I + + + ++ G+ + + L T+ Sbjct: 293 TNHQVIEDHKAHASVHYLSLEPRYIYVRID-------ENLKNDAFKRGIVHKLMSYLTTY 345 Query: 235 STFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVI 294 F + +DE ++F + + + ++ I + L + Y+I Sbjct: 346 RDFRL------IVDETLVPNSANVVSF--KSKVDGDREYLDITYFNRISNFKHLGRDYLI 397 Query: 295 TNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKS 354 + + +L+ L + N + + + LP + L ++ D++ Sbjct: 398 DASSLHSTMRIMLDDLLDSFNIDIQKSILKQQISELPKQEESLQLALESLGLTFMTLDRA 457 Query: 355 LNRASELLGEIVQSSPEFTYARAEKALVDIV--RHSQHPLDEKQLAALNTEIDNIVTLPE 412 + + + P+ + + + L ++ + EK + LN + L E Sbjct: 458 --DTLKKIIAANELEPDNHFVMSSRYLYELADIFLLKSSQKEKLVQKLNDRFGKKLLLAE 515 Query: 413 LNNLS-IIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAAD 471 N S IY A +L + + + + + E + ++ ++L K+ E KG A + Sbjct: 516 NNPTSYRIYDALAAYSLTQDNPNAAERYMTLIPRSEYNVMSMIILAKLKESKGNPAAAEE 575 Query: 472 AYLTAFNLRPGANTLYWIENGIFQTSVPYV 501 Y L + F +++ + Sbjct: 576 YYYETILESGYPVVLKVAQTLFFNSNISEI 605 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 1 MQQPVVR--VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW 58 M++ ++ WL P +++ + + ++ RL LL FF Q+ V SRDELI+ VW Sbjct: 1 MKKERIQYSFDVWLFIPDEDKLIMDNEDVIIDNRLSKLLDFFCQNPNIVFSRDELINEVW 60 Query: 59 KRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVI----WYSEEEGEE 114 SI+T+ V+TQ+I ELRK+LK + S YI TVPKRGYK V V Sbjct: 61 NGSILTDQVITQAIFELRKTLKSAERHSMGYIITVPKRGYKFDVEVKKTVLVPPPIVTNT 120 Query: 115 IMLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKR 155 + L+ E V S + + + Q+ K Sbjct: 121 VSLADTVSYDETVSQEQEASPVSSPNSESMATNQAQAKQPH 161 >UniRef50_Q1ISH8 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ISH8_ACIBL Length = 619 Score = 195 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 71/492 (14%), Positives = 142/492 (28%), Gaps = 51/492 (10%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M E+ + ++ R+G ++ LE + ++LL+F ++++R+E+I +W+ Sbjct: 30 MSTAKRSAAEFELDLGRYELRRSGSRVKLEKKPMELLMFLVSRREQMVTREEIIRKIWRT 89 Query: 61 SIV--TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLS 118 + + + ++R +L D D D P ++ TV GY+ + P+ E Sbjct: 90 DLFIDAERNLNNIVRKIRTALGD-DPDRPRFLETVVGVGYRFIGPMRVV------EAQFP 142 Query: 119 SPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAF 178 + + T L + + V L + + + Sbjct: 143 RAETLDIPIDETSRSIAVLPLVMAGKANDDEGVGIGFADALAAQLGKLQGVVVLPSSATI 202 Query: 179 SSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFM 238 + + L R + + W ++ A + S Sbjct: 203 H-FSAAVSPKEVAAKLATRFVVHGAIRLQKGEWRLSVEMLDAHS-----GRVCFSKSFDT 256 Query: 239 VHDKINYNIDEPSSSGKT---LSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVIT 295 D+ E + L + QR R + + + Y ++ Sbjct: 257 SLDRFAQVEGEVAREVARALKLPLNAPQQR-PRHSRNPL---------AYAEFMRGYKLS 306 Query: 296 NGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSL 355 A + L A+ + + A L+ + + L Sbjct: 307 GSGDPAEVARASQHLGTAVARDPNFALA----------HATLSFVFAVQHFESDPTSALL 356 Query: 356 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDE-KQLAALNTEIDNIVTLPELN 414 +A ++ PE A +A P + L A+ D L Sbjct: 357 EKAEFHGSRALELDPELPEALVARA-----FLVWGPSKNFQHLEAIT---DLKRALSLQK 408 Query: 415 NLSIIYQIKAVSALVKGKTDESYQAINTG--IDLEMSWLNYVLLGKVYEMKGMNREAADA 472 NL Y G D + + G + + V+ VY KG AA+ Sbjct: 409 NLPHAYNRLGTILAHVGLLDHALEMFERGRPFHPKRAVSPSVVQ--VYGWKGEFERAAEV 466 Query: 473 YLTAFNLRPGAN 484 P Sbjct: 467 IAAWREESPNNK 478 >UniRef50_A6GR68 Transcriptional regulatory protein-like protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GR68_9BURK Length = 510 Score = 194 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 71/524 (13%), Positives = 143/524 (27%), Gaps = 80/524 (15%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + + + + R G + L R D L+ + VLS+DEL+ VW + Sbjct: 2 DSSYFFDHFELRANERLLLREGEAVNLGSRTFDFLMCLVTNHTRVLSKDELLQTVWPGMV 61 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 V + +T S LRK L I+TV RGY+ +PV + S Sbjct: 62 VEENNLTVQTSALRKLLGSQA------ISTVTGRGYQFSLPVRRTEVSSKPTVQKHS--- 112 Query: 123 IPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLD 182 L + + + + + Sbjct: 113 ----------TIAVLPFKVLGEQTDLRFLAEGLLEDVIALLARVPGFLVISQASTQIFDH 162 Query: 183 TRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLS------------------------ 218 + + + + L + + + + + QL+ Sbjct: 163 SSVALPEIAEQLQVQFVVLGSIRRVDEIIRVNVQLAEAQTGQVLWNSRFECSPASSADLQ 222 Query: 219 --YAIGVGDLVATSLNTFSTFMVHDKINYNIDEPS---SSGKTLSIAFVNQRQYRAQQCF 273 A G+ + +L + + N+D + + L+ ++ R + Sbjct: 223 EEIARGLLSELEPALTKAEIAQIRRQRPNNLDAWAHYHEATGALAQLGWSEAGLRDARHQ 282 Query: 274 MSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWP--QRMQETLQKILP 331 + S +D + + + + +L AL++ L L Sbjct: 283 LE--------NSIEIDSNFGLAHAHL---------ALLTALSRNIGLLPHSDAVLASGLT 325 Query: 332 HRGALLTN---FYQAHDYLLHG--DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR 386 + + Y D + L +Q +P A + Sbjct: 326 AANTAIELDGGNSEVMGYAGCALCDLGQTRQGLITLKAALQLNPSN-------AQAQVAH 378 Query: 387 HSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESY-QAINTGID 445 + L + + + P+ L I + L + +E+ +AI Sbjct: 379 GAALVLMNELEGGIAQMRLGMRISPKDRRLGFWLWILSCFLLRANRPEEALEEAIKAVQH 438 Query: 446 LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWI 489 L +V + G A A + A LRP + Sbjct: 439 DTRFHLAHVAQAAALDKLGNTPLAQQALIQARTLRPALSVEEIA 482 >UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJR7_CELJU Length = 499 Score = 190 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 85/501 (16%), Positives = 159/501 (31%), Gaps = 71/501 (14%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V + W + N +S +++ LE RL+ LL+ F H GEVL ++ ++ +W+ +V Sbjct: 19 KVFAIDSWRLCVHSNSLSSGDQRVELEHRLVALLLMFIDHPGEVLEKERILATIWQGKVV 78 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + + +IS LRK+L DN SP YI T+P GY+ + E ++P P+ Sbjct: 79 NDDSLAVAISHLRKALGDN-PRSPRYIKTIPGVGYQFIASAAPVEEAP------ATPAPV 131 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 PEA P + +RF + + L V L A+ + D Sbjct: 132 PEAAPLNPVI-------------AERGYPHRRFPRS-PGLWIPILLACLVLLTAWYARDE 177 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWS------------SPYQLSYAIGVGDLVATSL 231 + P+S LL + + W P + +G+ L Sbjct: 178 KKPVSSPDELL--VLAGTQLASGQAEGWRQAIGSFRQVLKLQPRTAAAYLGIAQAKMWLL 235 Query: 232 NTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKR 291 H + + + + + +R C D + Sbjct: 236 GEQLAQPAHCDEVIGLLDKAIQIDSSLVDAWRERGNAYFWCR-----RDTLTAEANYQRA 290 Query: 292 YVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGD 351 + A L + + L + L ++ + Sbjct: 291 MALAPEGDTAPMQ------LAQLRLAQGRFEESLALMDLARQHNPLNYSVPMVVWIYQMN 344 Query: 352 DKSLNRASELLGEIVQSSPEFTY--ARAEKALV-----------DIVRHSQHPLDEKQLA 398 + + A L I ++ P+ Y A++ L + D+ +L Sbjct: 345 RRQ-DLAWAELQRITRAEPDDRYYHVSAQRVLASMGREEESFAHWQWLMADAGFDDDKLQ 403 Query: 399 ALNTEIDNI------VTLPELNNLSIIYQIK-----AVSALVKGKTDESYQAINTGIDLE 447 A+ L E + + + Q A AL G+T ++ + + L Sbjct: 404 AVQAAFAEAGLSGVNRWLLETRDTADLGQYLPPLSWARYALAAGETTQALEFLEQAAALP 463 Query: 448 MSWLNYVLLGKVYEMKGMNRE 468 L ++ + Y Sbjct: 464 QVPLLWIAVDPAYSTLSDEPR 484 >UniRef50_Q1Z6E8 Transcriptional activator of cad operon n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z6E8_PHOPR Length = 509 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 78/500 (15%), Positives = 163/500 (32%), Gaps = 46/500 (9%) Query: 11 WLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQ 70 + +P NQI+ NG + LEP LL FF + G V++ ++ D VW RS V++++V Q Sbjct: 15 IIFSPDKNQITINGEDIHLEPLQARLLTFFIEQQGNVVNAQQIADRVWDRSHVSDNLVRQ 74 Query: 71 SISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEG--EEIMLSSPPPIPEAVP 128 IS LR L+D I T+PK+GY + V + +L++ + Sbjct: 75 VISLLRSQLQDKT-RPYSIIKTIPKQGYLFNIEVTKNYTPQTNINHSILATENSAEDNQL 133 Query: 129 A-------TDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 A + AT + + R ++ L G+ + Sbjct: 134 AIQIESRLQPESALQKEQMVHATQQATARPRHTRIKKSVLFIVLLTISGLGLGSNYLWQQ 193 Query: 182 DTRLPMSKSRILLNP---RDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFM 238 + + + P +I+++ S S L Y + ++ T Sbjct: 194 SSHSSAKSQQQGVLPVFLHEINLDTEQDYEMSQSVYNYLFYGLNSSKSISGYHFDQLTPE 253 Query: 239 VHDKIN------YNIDEPSSSGKTLSIAFVNQRQYRAQ----QCFMSIKLVDNADGSTML 288 K++ + + S G +L++ N +Q + F ++ + Sbjct: 254 AKQKLSETGIEIKSWIKKSHDGYSLTVLLQNNQQPALNTKIEKTFNKEDFFNSIGDVIIE 313 Query: 289 DKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLL 348 K + I N + S++ + + L + + + Sbjct: 314 LKTIISPTDQGYEITNHRVTSVTDYNDWKVISEGISLFYQG--KGKKALDKVTEKLNIIQ 371 Query: 349 HGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 408 + + + + + + D ++ AL Sbjct: 372 VEGRG------------------NYLVSSLLSYSESLHYLKSNNDIQKKQALVLAKQAFE 413 Query: 409 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNRE 468 P + ++ ++ L+ D+++ + + S ++Y LL V + R Sbjct: 414 MNPRCDIANLTLG---LALLLNDHNDQAFPYLFYAAESTPSPISYYLLSVVDKKADNPRG 470 Query: 469 AADAYLTAFNLRPGANTLYW 488 AA Y ++ N + Sbjct: 471 AAYHYQRYTEMKKEVNGQLF 490 >UniRef50_Q0HTC3 Lysine decarboxylase transcriptional regulator, CadC n=3 Tax=Alteromonadales RepID=Q0HTC3_SHESR Length = 1075 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 80/460 (17%), Positives = 159/460 (34%), Gaps = 22/460 (4%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M +GEW V PS N + + LEP+ +D+L+F Q++GEV+S DE++ + W Sbjct: 1 MSDSTFFLGEWQVNPSANSLLLGKQVKQLEPKAMDVLLFLCQNAGEVVSSDEIVSHCWPG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 ++ + + I++LR++L D+ +S YI T+ KRGY+ + V + E + Sbjct: 61 VDTGDNPLHKIINQLRRALGDSATES-RYIETIRKRGYRTLAEVRFPVGHEASATPQTWQ 119 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 P P + S + + S + ++ F L LG Sbjct: 120 GGSP--FPGLQAYSANYADVFFGRSEQISTLLNRISQQIQFGRAFCLILG---------- 167 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 S + P + N N S + G L+ + + ++ Sbjct: 168 PSGSGKSSLINAGVLPNLMAANGFNGVGVVAYSSLDFADVSK-GQLLTDLASAMLDWELN 226 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQ----RQYRAQQCFMSIKLVDNADGSTMLDKRYVITN 296 D + + L + +Q Q + + + D +L + + Sbjct: 227 DTPVFEGMSADTLAAKLEQDPQSIVDICKQSLKNQTYATPRFALFIDRLEVLL-SSPLFS 285 Query: 297 GNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLH-GDDKSL 355 + + +LLE L+ + + +L + +L+ + + L L Sbjct: 286 DAERSTFIELLERLATSHAVLILSACRNDFYPLLVNYPSLMAGKARGAHFDLAPPTRTEL 345 Query: 356 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 415 + L + E A + + D + + + + Sbjct: 346 LQMIRLPAVAANLTWEIDSDTAMPLDEMLCSDAASNPDALPMLQYTLQALYLQRSDDDKL 405 Query: 416 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 455 L +Y+ GK + QAI+ + E + L +L Sbjct: 406 LVSVYRTLGGIEGAIGK--NAEQAISHLTEAEKASLPRIL 443 >UniRef50_B1Y588 Transcriptional regulator domain protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y588_LEPCP Length = 543 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 68/467 (14%), Positives = 138/467 (29%), Gaps = 76/467 (16%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 GE+ V P ++ G + L R D+L+ V++++EL++ VW +V Sbjct: 3 HRYTTGEFEVRPDERRVLLRGEPVPLGARAFDVLMCLIAQRERVVTKNELLEQVWPGMVV 62 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + +T +S LRK +AT+P RGY+ ++ + + + + P Sbjct: 63 EENNLTVHVSALRKVFGAQA------VATIPGRGYRFVMALDETTGAPAVAPVPAPAPAS 116 Query: 124 PEAVPATD-------SPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALV 176 L + N + +Q + SL + Sbjct: 117 VVGADGPTGLTLPDRPSIAVLPLDNLSGDAQQDLLIEGLSEDVITELSRFRSLFVIARNS 176 Query: 177 AFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFST 236 +FS + ++ +GV ++ SL Sbjct: 177 SFSFR------------------------GLAHGERDVRAIARELGVRYVLEGSLRR--- 209 Query: 237 FMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITN 296 + ++++LVD + + ++Y Sbjct: 210 -------------------------------AGDRVRVAVQLVDAVSATQLWAEKYDRAV 238 Query: 297 GNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDK--- 353 + A+Q +L ++ A+ + ++ T +A D D + Sbjct: 239 DDLFALQEELTRAIVGAIAPQIEAGEFQKIRSARGRDLNAYTLAMRARDTARRADREGDA 298 Query: 354 -SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 412 + + A L E V+ P A A A V + AA+ + Sbjct: 299 TTRDEALRLAHEAVEIDPGCGVALATIAFVQWQQIWAGSAASPVDAAVAGLAAARRAIAL 358 Query: 413 LNNLSIIYQIKAVSALVKGKTDESYQAINTGID-LEMSWLNYVLLGK 458 + + KA+ L + + + L LLG+ Sbjct: 359 DGSDHHAHLWKAMLQLFTHQHAAGLADLQRAHELNPNDALTLSLLGQ 405 >UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022A1_SOLUE Length = 605 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 77/470 (16%), Positives = 153/470 (32%), Gaps = 48/470 (10%) Query: 27 LTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDS 86 + LEP+ +++L+ + GEV++R +L+ VW + V ++ +IS LR+ L D Sbjct: 2 VALEPKAVEVLLILVEKRGEVVARQDLMSAVWPDTFVEESNLSSNISILRRQLG-TPPDG 60 Query: 87 PVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPP 146 YI T+PKRGY+ + V E S EA ++ + T Sbjct: 61 GDYIQTIPKRGYRFVAAVNQAGSELEAATAEVSEIVSAEATTTVRVRKLTIRPRVILTSA 120 Query: 147 EQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNK 206 V +W L + A + L Sbjct: 121 AGLLVVVLPLLYLGLWHGRLPGFAAEPHIGAIAVL------------------------P 156 Query: 207 SCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNI-----DEPSSSGKTLSIAF 261 N P + +A G+ + + + V + + + + L + Sbjct: 157 LENLSGDPAEEYFADGMTEALTADMAQIGALRVIARASVMQYKGTKQPLAQIAERLHVEA 216 Query: 262 VNQRQY--RAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWP 319 V Q+ ++ L+ A G + + Y + G+ L +QN++ +++ + Sbjct: 217 VVSGAVLRSGQRVRITAALIRAATGQQLWARTYERSLGDVLDLQNEVARAIAAEVQAKLT 276 Query: 320 QRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEK 379 + Q L + P + + + Y +++ E ++ P + A A Sbjct: 277 AQEQIRLARSRPVKADAYDAYLKGRYYYNQFTVDGFSKSIEHFERAIKLDPNYASAYAGL 336 Query: 380 ALV-----DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD 434 A I + + L A N + LPE + A++++ + Sbjct: 337 ADALASLEQIGAARSEDVHPRALEAANKALAMDDALPEAHA--------AMASVRANDWE 388 Query: 435 ---ESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 481 +A L ++ + G E+ A L P Sbjct: 389 RSAAEREAKKAIELNPGFALAHLYYSNMLRHLGRREESIAEARRALELDP 438 >UniRef50_Q89XL4 Transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89XL4_BRAJA Length = 989 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 60/390 (15%), Positives = 139/390 (35%), Gaps = 49/390 (12%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + ++ G + + PS ++ R+G L L R D+L+ + +G V+S+ EL+ W + Sbjct: 47 REILVFGPFRLDPSQRRVERDGSPLQLSGRAFDILLALVRQAGNVVSKTELMATTWPGAA 106 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 V + + I+ LRK+L D D Y++TV +GY + V + + P Sbjct: 107 VEENSLRVHIAALRKALGD-GNDGVRYLSTVSGQGYCFVAAVSRPEQRQP-------APT 158 Query: 123 IPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLD 182 P V + + + A ++++RF T V Sbjct: 159 NPTYVHNLPAHPRQMVGREQAIQDISERLRAQRFVT-------------VVGPGGIGKTT 205 Query: 183 TRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGV-------GDLVATSLNTFS 235 + + + + + ++ ++ P ++ ++G+ + +AT L Sbjct: 206 VAISAGHALLAEFAGHVHFVGLGETGSAAPVPAIVASSLGLRARSNDPTNSLATFLRDMR 265 Query: 236 TFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVIT 295 ++ D + I+ ++ + L A + + ++ + Y + Sbjct: 266 MLLILDCCEHVIEAAAALAERLYQAAPELHILATSRELLRVEG----------EFTYRLP 315 Query: 296 NGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSL 355 + ++ + + AL P + E LT+ D +L Sbjct: 316 P--LPSPPEKIVLTAANALAYPSVKLFVERATAG--GGEFALTDA-------NASDVGNL 364 Query: 356 NRASELLGEIVQSSPEFTYARAEKALVDIV 385 R + + ++ + A +A+V ++ Sbjct: 365 CRRLDGIPLAIELTAGHVGAYGARAMVQLL 394 >UniRef50_Q1IKQ5 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IKQ5_ACIBL Length = 945 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 75/494 (15%), Positives = 166/494 (33%), Gaps = 59/494 (11%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW-KR 60 + VV G + + +++ G + L+ + ++L + GE++SR+E+ +W Sbjct: 7 EAKVVAFGLFKADLNARSLTKGGASVRLQDQPFEVLGLLLERPGEIVSREEIRQRLWSSD 66 Query: 61 SIVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSS 119 + V + + +I +LR +L D+ +P ++ TVP+RGY+ + PV S E Sbjct: 67 TFVEFDDGLNTAIKKLRTALGDS-ALNPRFVETVPRRGYRFIAPVSVLSPVATPE----- 120 Query: 120 PPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFS 179 PE+ + Q T T P S ++LG+ ++ +A Sbjct: 121 ----PESQTEDVVIASRERSQITITQPHHPVFWST------------VALGLAISFLAGG 164 Query: 180 SLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSY-AIGVGDLVATSLNTFSTF- 237 S S + P + + + + ++ + + ++ T L Sbjct: 165 WYYRSRSGSDSVVSAAPIRMRPAVAVLGFHDLTGRRDTAWLSTAIAQMLCTELGAGEQLR 224 Query: 238 --------MVHDKINYNIDEPSSSGKTLSIA------------FVNQRQYRAQQCFMSIK 277 ++ ++ ++ + + Q + ++ Sbjct: 225 MVSGEQVARARKEVAWDREDTLEKASLTKLRSRLGSDYVVIGAYTVVDSPAGPQIRLDVR 284 Query: 278 LVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKI-LPHRGAL 336 L D G T+L++ A+ + + L L + + LP Sbjct: 285 LQDARAGETLLEESDTGNQSELFALVSHTGQRLRDRLGIDRANGDHDAQIRASLPKNVEA 344 Query: 337 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQ 396 + + + D + +A +LL + + PE + A A + ++ Sbjct: 345 ARLYSEG---VAQLRDGNAVQARDLLTKAIAIEPEHALSHAALAEAWTMLGYDSRASQEV 401 Query: 397 LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL- 455 A N D I+ + ++ + DL ++Y L Sbjct: 402 QLAFNLSQDLSRETKL--------SIEGRYRALAHDYPKAIEIYRKLRDLYPDNIDYALV 453 Query: 456 LGKVYEMKGMNREA 469 L +V G+ ++A Sbjct: 454 LARVQNKGGLPKDA 467 >UniRef50_B5WFU1 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. H160 RepID=B5WFU1_9BURK Length = 558 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 107/282 (37%), Gaps = 22/282 (7%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V G + + P+ ++ R+G + L R +D+L+ QH+G+V+ R L+ W+ +V Sbjct: 77 EAVSFGPFTLFPAQRRLERSGSFVQLGSRALDILIVLIQHAGQVVDRRMLMSRAWRNIVV 136 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + +I+ LRK+L D E Y+ VP GY + + ++ P P Sbjct: 137 DESNLRVNIAGLRKALGD-GEGRVRYVKNVPGIGYCFVGQLTRERIVAESGSQIAEPSPC 195 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 + Q + R + L+S V Sbjct: 196 VHSADFGP-----------GAACPQGRDEVLRTLASDLRRHRLIS---IVGPGGIGKTTV 241 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDL-------VATSLNTFST 236 + ++K + P +I + +++ + + L+ +G+GDL +A L+T Sbjct: 242 AIALAKRLSGVFPSEIHVADLSEVADGDAVALTLARLLGLGDLHHVPVTYIANYLSTRRA 301 Query: 237 FMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKL 278 ++ D +Y IDE ++ + + + ++ Sbjct: 302 LIILDNCDYVIDEVTALTMQILAVSSGTHFVLTSREALRVRY 343 >UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KKU4_SHEWM Length = 711 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 95/422 (22%), Positives = 157/422 (37%), Gaps = 50/422 (11%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M++ VG++ V S NQ+++ + TL P+ + +L A++ V+S+DEL+ +VW Sbjct: 1 MEEQ-YWVGDFFVDLSRNQLTQKQQSQTLPPKALAVLTCLAKNKASVVSQDELLSHVWPN 59 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 S+V + + + I++LRK+L D D YI T K+GY L V V W E SSP Sbjct: 60 SVVAPNTLQRCIAQLRKALGD-DGKVQRYIKTHAKQGYSLEVDVHWQQPEPNNANKDSSP 118 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 P AV DSP SK + LL + V F Sbjct: 119 LPTTLAVQVEDSP----------------HQPSKTVSRLISAVIALLIIVFGVIGYQFFP 162 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSY--AIGVGDLVATSLNTFSTF- 237 L P+ + + + + + Y + L A +L T F Sbjct: 163 LTASTPLVVKSMQPLTSTDNRELASIYSPDGEYVIFMRYPEVLCTSHLWAKNLATQEEFQ 222 Query: 238 MVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNG 297 + D +Y + G L AFV Q S + + D + L + T Sbjct: 223 LTQDLGSYGSLAFADDGSKL--AFVEQNSCGQAVTQKSCFQLQSLDFAKAL--KSPQTPT 278 Query: 298 NQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAH--DYLLHGDDKSL 355 + N + SL W + Q TL + L HR L+ +H D + +D +L Sbjct: 279 TLMECNNSKIRSL------QWLNQDQVTLMQQLAHRWQLIRYSISSHSSDTIFSLEDGNL 332 Query: 356 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 415 ++ Y+ ++ + S H D++ + L + + Sbjct: 333 I--------------DYDYSPSQNLIA---LTSIHHDDQRYIETLTPDGQLASSHLIDYP 375 Query: 416 LS 417 S Sbjct: 376 DS 377 >UniRef50_B2T985 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia RepID=B2T985_BURPP Length = 504 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 107/282 (37%), Gaps = 22/282 (7%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V G + + P+ ++ R+G + L R +D+L+ QH+G+V+ R +L+ W+ +V Sbjct: 23 EAVSFGPFTLFPTERRLERSGSVVQLGSRALDILIALIQHAGQVVDRRKLMSRAWRNIVV 82 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + +I+ LRK+L D ED Y+ VP GY + + S P P Sbjct: 83 DESNLRVNIAGLRKALGD-GEDGVRYVKNVPGIGYCFVGQLTRERIATESSSHFSEPFPR 141 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 + Q + R + L+S V Sbjct: 142 VHS-----------GGFAPGAARPQGRDEVLRTLASDLRRHRLIS---IVGPGGIGKTTV 187 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDL-------VATSLNTFST 236 + ++K P +I + +++ + + L+ +G+GDL +A L+T Sbjct: 188 AIALAKRLSGEFPSEIHVADLSEVAHGDTVALTLARLLGLGDLHHVPVTCIANYLSTRRA 247 Query: 237 FMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKL 278 ++ D +Y IDE +S + + + ++ Sbjct: 248 LIILDTCDYVIDEVTSLTTQILAVSSATYFVLTSREALRVRY 289 >UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Tax=Proteobacteria RepID=A6UHF5_SINMW Length = 531 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 72/490 (14%), Positives = 153/490 (31%), Gaps = 79/490 (16%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 ++++ +++ G+ +++ P++ DLL+ V+S+DEL+ VW IV+ Sbjct: 3 FMFADYVLDRERRELTLRGQVVSVGPQVFDLLLHLVGTRDRVVSKDELLQAVWGGRIVSE 62 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLS------- 118 +T I+ +RK++ D + + TV ++G++ + + E + Sbjct: 63 STITSHINAVRKAIGDTGGEQ-RLVRTVARKGFRFVGDIRIADSAEARQPGGPGSAGHTS 121 Query: 119 ---SPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVAL 175 PP A+P S + L QN + +Q + L + Sbjct: 122 LGSKEPPPALALPDKPSIT-VLPFQNLSGDADQDYFADGVVEDIITALSRIRWLFVIARN 180 Query: 176 VAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFS 235 +F+ + + + L R + V K+ N QL A L A Sbjct: 181 SSFTYKGREVDLKEVGQELGVRYVLEGSVRKAGNRVRITGQLIDATAGTHLWAE------ 234 Query: 236 TFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVIT 295 + +D+ ++ + V + ++ Sbjct: 235 ------RFEGTLDDIFELQDRVAESVVGAIAPQLER------------------------ 264 Query: 296 NGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSL 355 E ++ + + +L +G +++ Sbjct: 265 -------------------------AEIERAKRKPTGSLDAYDYYLRGMAHLHNGTREAI 299 Query: 356 NRASELLGEIVQSSPEFTYARAEKALVDIVR---HSQHPLDEKQLAALNTEIDNIVTLPE 412 A L + ++ P+F A A A R ++ + L Sbjct: 300 EAALPLFYKAIELDPDFASAYAGAAWCYFWRKLNGWMIHRAQEIAEGARLARLAVE-LGR 358 Query: 413 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLN-YVLLGKVYEMKGMNREAAD 471 + +++ A+ LV G D I+ L + + L G + +G A + Sbjct: 359 DDAVALTRSGHALGHLV-GDLDGGIALIDRARLLNPNLAPAWFLGGFLRVFRGEPESAIE 417 Query: 472 AYLTAFNLRP 481 A L P Sbjct: 418 HIERAARLSP 427 >UniRef50_Q1QIX2 Lysine decarboxylase transcriptional regulator, CadC n=2 Tax=Rhizobiales RepID=Q1QIX2_NITHX Length = 574 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 76/486 (15%), Positives = 142/486 (29%), Gaps = 40/486 (8%) Query: 5 VVRVGEWLVTPSINQISR-NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V+ + + ++ G L L P+ + LL+ FA + G VLS+ EL+D VW V Sbjct: 2 VLCFAGFQLDRPRAELRGPGGEALKLRPKTLCLLILFATNPGRVLSKRELMDAVWPNVHV 61 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + + Q I E+R +L D + + V GY V + + PP Sbjct: 62 GDDSLFQCIREIRTALGD---ERRQLVRLVSGHGYVFEAEVSVQAASSDTPVPSPVPPFS 118 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 P P + R + + +L + V L A ++ Sbjct: 119 VTDAPGEPDTPGK-------PDVTIEPTRLSRLSGLRRPAAMIAALSVVVGL-AVATAIQ 170 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKI 243 R P+ + R + I + ++ + A G+ + + Sbjct: 171 RAPIFEERGPPTIAVMPIKAAGGEAAAMAANVTVRLADGLAK-------------IENIR 217 Query: 244 NYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMS--IKLVDNADGSTMLDKRYVITNGNQLA 301 + + T FV + + + +++ AD + IT G+ Sbjct: 218 VVALQSALPAAGTPQADFVLSGELQQGEGTWDAQVRMTRTADREVVWTAPATITVGDAEL 277 Query: 302 IQNDLLESLSKALNQPWPQRMQETL-QKILPHRG-------ALLTNFYQAHDYLLHGDDK 353 L+ ++ P R+ L P + QA +L Sbjct: 278 SLQQS--RLAASIGHPLAVRISTLLDAAAKPTESGRGASPGSANVVIEQATASILRTTRD 335 Query: 354 SLNRASELLGEIVQSSPEFTYA---RAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 410 A +L + + PE A L I P D I Sbjct: 336 RFATAQTMLEKALAGDPENVDLAVSLAALQLRGIQMVWYSPADSAAAETRARAILERALQ 395 Query: 411 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAA 470 + +++ ++ + T + L +G G +A Sbjct: 396 VKPSSIPVLEAYCRFLNATNEFVESLVACARTLNFDPWNGLALYHIGLAQLQLGRFEDAL 455 Query: 471 DAYLTA 476 + A Sbjct: 456 ATFKQA 461 >UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium loti RepID=Q987X1_RHILO Length = 903 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 100/277 (36%), Gaps = 11/277 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + R G + + ++ R+G+ L L R D+L +GEV+ +ELI VW Sbjct: 1 MDGQIFRFGPFEMHREQRRLYRDGKLLQLGSRAFDILQILVMRAGEVVRHEELIAMVWPD 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 + V + + +++ LR++L + IA VP RGY PV + E + +S Sbjct: 61 TFVAENNLRVNMTALRRALGPEGSLTNGLIANVPGRGYSFTAPVAHQTVEHAPDRHDNS- 119 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 E + P ++ ++TA V S+R T + + L A Sbjct: 120 ----EGLRTLPRPLGAVFGRDTALATLAGQVPSRRLVTITGAGGIGKTTLV---LAASHH 172 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 L P + L P + + + ++ + + + ++ Sbjct: 173 LRNAYPDGVILVDLAPISDPQLVASAVATALGQAFRNESVVS---ELTAVIADRRILIIL 229 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 D + +D + + L + + + + Sbjct: 230 DSCEHVVDPAALLSEQLLQSTSRLGIIATSREALRAE 266 >UniRef50_A4CDR3 Putative transcriptional regulator n=2 Tax=Pseudoalteromonas tunicata D2 RepID=A4CDR3_9GAMM Length = 709 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 75/359 (20%), Positives = 139/359 (38%), Gaps = 25/359 (6%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++++G + + +S + +++ LEP++ D+L +F QH +S EL +N+W+ V+ Sbjct: 1 MIQIGRYQLDEEEMVLSCDDQRVLLEPKVFDVLTYFCQHHNRYISMTELHENIWQGRCVS 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + V + IS++R + D D +P YI ++PKRGYKL+ PV + E+ E + S Sbjct: 61 DAAVRRIISKIRILMND-DHKNPTYIQSLPKRGYKLICPVEYDIEDAAESSSVEST---- 115 Query: 125 EAVPATDSPSHS-LNIQNTATPPEQSPVKS-----------KRFTTFWVWFFFLLSLGIC 172 AV TD H+ N N T PE+ + K+ F F LL L IC Sbjct: 116 -AVAITDLSDHNEANNYNEPTEPEEHQDLAEELAGNFVHVVKKPKKFKYTFLSLLMLCIC 174 Query: 173 VALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLN 232 V + + P ++N D V +S + + G + Sbjct: 175 V--FGYLAKSWFFPAIVQTQVVNTLPGDKIAVTQSADGSYLAFSGQVHDESGFQIYVKHQ 232 Query: 233 TFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRY 292 + F + + S S+ F + + + + + + +L Y Sbjct: 233 SDFDFRPITHHAHLPSSIAFSFDNKSLYFSDTSKINSSLNQIKLDGENRE--IEILVDNY 290 Query: 293 VITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGD 351 + + A ++ A + ++ +T QA + GD Sbjct: 291 FLISDVFTA---RTSNNVFFAAKKSTEGPFLIYEYDVVNKAVTAITASSQAESLDIKGD 346 >UniRef50_A3WEA4 Adenylate cyclase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WEA4_9SPHN Length = 775 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 80/443 (18%), Positives = 166/443 (37%), Gaps = 40/443 (9%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 R+G LV PS+ +I+ + LEP+++ +L+ + G +LSRD+LID W +V + Sbjct: 27 FRLGSILVQPSLRRITGPDGERMLEPKVMQVLIALSSPVGTILSRDDLIDRCWDGRVVGD 86 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + + IS LR L++ D+ V + VPK GY+++V E + +L P P Sbjct: 87 TSINRVISILRTGLREVAGDAAV-VENVPKVGYRIVVR-------EAPDDVLEKPAPDVI 138 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 P + + + ++R T +L+L V + Sbjct: 139 EQPTKPKVAAT-----------RRLQANRRATIIIAGALAVLAL---VGAAIWLKPFAGG 184 Query: 186 PMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINY 245 P+ R+ + P +I + S + +A VG + T+ + + + Sbjct: 185 PVGTVRMAMLPLEISEGVDPIYAAGLESELRAEFA-RVGAMEVTASESAKLLLGEN---- 239 Query: 246 NIDEPSSSGKTLSIAFV--NQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQ 303 EP+ G L + FV + + A++ + + +V++ G T+L + + ++ Sbjct: 240 --LEPAEIGTKLGVQFVWSGRFEVEAERIVLDVNVVNSETGETVLSQSVNSATDSAQSLP 297 Query: 304 NDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLG 363 +++ AL++P + + + A L + A E+L Sbjct: 298 FRTARAVATALDRPVRATATQETIS-----ASDFRLYLVATGLLKTRGQDQVGAAREILE 352 Query: 364 EIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIK 423 + + +F A+ ++ P D Q+ N + Sbjct: 353 LVTARNGDFADGWGALAMAYFLQ---RPSDPSQIEG-NLAKALETAEKAVAIEPNTIGAL 408 Query: 424 AVSALVKGKTDESYQAINTGIDL 446 V + + + ++ + L Sbjct: 409 KVFGMSAKDAETALASLGRVVKL 431 >UniRef50_B2JV05 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JV05_BURP8 Length = 658 Score = 168 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 50/338 (14%), Positives = 109/338 (32%), Gaps = 35/338 (10%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++R+G + + + +G+ + + R D+L + G ++S++ +++ +W S+V Sbjct: 1 MIRIGPLDIDLACREARVDGKPVRIGNRAFDMLELLIEAQGGLVSKEAILERIWPESVVG 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 ++ + +S LRK L D S I T+P RGY+L+ + + P Sbjct: 61 DNNLQVHMSALRKLLGD----SRDLIKTIPGRGYRLVRGAAIVRHADTAASYVERQTAAP 116 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTR 184 +PA +S L + A + R T + Sbjct: 117 HNLPACNSA---LIGRAEAIAHVSDALGKARHVT-------------LIGSGGIGKTRVA 160 Query: 185 LPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGV--------GDLVATSLNTFST 236 + + + P + ++ + + L+ IGV + + ++ Sbjct: 161 TEVGRRLLDDAPGGVYFVPLSAASDMCGVLAMLASVIGVHPDGCASTRERIVEAIGGRRM 220 Query: 237 FMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITN 296 +V D + +D + L A R + + I + + Sbjct: 221 LIVLDSCEHVVDAAAQLAHHLLDACAQLRVLSTSREPLRI-----PSETLYWVPALDVPE 275 Query: 297 --GNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPH 332 + L + SL + R I Sbjct: 276 PNDDVLQVLRSSAVSLFLTRARAIDARFAADEASIQVT 313 >UniRef50_Q1MK13 Putative transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MK13_RHIL3 Length = 968 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 54/330 (16%), Positives = 108/330 (32%), Gaps = 37/330 (11%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 G +++ P + R+ + + R +++L + GE++ + EL+ VW + V Sbjct: 4 YFFGPYVLVPERQSLMRDQTAVRVGSRALEILAALIERPGELVGKAELVSRVWPDTFVEE 63 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + +++ LR++L D YIATV RGY+ + PV G+ + Sbjct: 64 SNLKVNVAALRRALGDA-PGDMQYIATVSGRGYRFVFPVRI----SGQSDTSVTATSQGA 118 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 + L + A + V+ R L V L Sbjct: 119 RTNNLPVSTTRLVGRGDAVDAIRCAVEVSR-------------LLTIVGPGGVGKTRLAL 165 Query: 186 PMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVG-------DLVATSLNTFSTFM 238 ++ I + ++ P ++ A+G+ VA + Sbjct: 166 AIADQLTAAYHDGIWFVDLATVNDATLVPTAIATAMGLRVHSANIKAAVAAFATDREFML 225 Query: 239 VHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGN 298 V D + I+ +S +TL A R + + + + ++ Y + Sbjct: 226 VLDNCEHVIEAVASCAETLLAAAARVRILATSREPLRV----------VGEQVYRLPP-- 273 Query: 299 QLAIQNDLLESLSKALNQPWPQRMQETLQK 328 S ++AL P + E Sbjct: 274 LETPPEVSELSAAQALAFPAVELFVERAAA 303 >UniRef50_B2TAV2 Transcriptional regulator, winged helix family n=4 Tax=Burkholderia RepID=B2TAV2_BURPP Length = 1010 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 47/332 (14%), Positives = 107/332 (32%), Gaps = 29/332 (8%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++R+G V + ++ +G+ + R D+L +G ++S+ +++ VW +IV Sbjct: 1 MIRIGPLQVDLASRELFLDGQPARIGSRAFDILAVLIGANGALVSKSAMLEQVWPDTIVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + +S LRK L + S I TV RGY+L + + P Sbjct: 61 ENNLQVHMSALRKVLGE----SRNLIQTVSGRGYRL---------ASRDAPEEQTGKPAR 107 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGI-CVALVAFSSLDT 183 + P S L P S + + + + + V Sbjct: 108 DGAPDAAEDSACLRGIPNNLPASSSSLIGRDQAVSDIARALASTRHVTLVGSGGIGKTRM 167 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVG--------DLVATSLNTFS 235 + +++S + P + + + + ++ S ++++GV ++ L+ Sbjct: 168 AIEIARSLLAHFPEGVYLVPLACTVDANSVLAMFAHSVGVSAASGPLTLAHISKELSERR 227 Query: 236 TFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVIT 295 V D + + + + L A R + + + D + Sbjct: 228 VLFVLDNCEHVLGPAAELAEALLNASPATRILATSREPLRV-----VDEHLYWVASLDVP 282 Query: 296 N--GNQLAIQNDLLESLSKALNQPWPQRMQET 325 + L + + R Sbjct: 283 ARDDESEQVLQRSAVQLFLSRARAIDARFSSD 314 >UniRef50_Q89GS8 Transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89GS8_BRAJA Length = 947 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 53/283 (18%), Positives = 97/283 (34%), Gaps = 27/283 (9%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q + G + + + ++G L L R +D+L+F A+ +GEV+ + ELI VW Sbjct: 7 QDSTIAFGPFRLLAKSRLLEKDGAPLHLGGRALDILIFLAERAGEVVDKRELIKRVWSGV 66 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V + I+ LRK+L D + Y+ VP RGY P++ + E S P Sbjct: 67 TVDEGSLRFHITTLRKALGDAG-EGARYVVNVPGRGYCFTAPLLHPAPSESRTSPPVSSP 125 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 A SP + + A + + RF T V Sbjct: 126 H------ALPSPLARMIGRGEAVEKISAELALHRFVT-------------IVGPGGIGKT 166 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVG-------DLVATSLNTF 234 L ++ + + ++ P ++ +G+ + L + Sbjct: 167 SVALAVAHGELTAFDGQVSFVDFGALTDARLVPGTIAATLGLTVNSDDPMPGLLAFLRSR 226 Query: 235 STFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 T +V D + +DE + + L + + Sbjct: 227 RTLLVFDSCEHILDELAPVAERLVQEAPELHILATSRESFRSE 269 >UniRef50_B6A1A4 Transcriptional regulator, winged helix family n=4 Tax=Rhizobium RepID=B6A1A4_RHILW Length = 950 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 107/279 (38%), Gaps = 11/279 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 +++ V W V + ++ G + + R +++ Q +GE++++D+L+ VW Sbjct: 6 VERRVFEFRGWEVDLARRELRALGSAVPIGSRAFEIIETLVQSAGELVTKDDLMQRVWPG 65 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 +V ++ V +S +RK+ + + TV RGY+L+ + + E ++S Sbjct: 66 IVVEDNTVQVHMSAIRKAFGPDR----NMLKTVSGRGYRLLGDWMIRQDSSPAEPVMSER 121 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 E T+ P + + ++ L+ G V + Sbjct: 122 ARQTEYAFRTNIPVATSALVGREVAVQEVGD-----LISAFRVVTLIGPGGIGKTVLATE 176 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYA-IGVG-DLVATSLNTFSTFM 238 L +L + +L + ++ + ++ + L G +LVA ++ + Sbjct: 177 LARKLFPTLKGDVLFVELVSLSDPDLVPSTVAHILNLQLHSDGTSPELVARAVGDRRMLL 236 Query: 239 VHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 + D + ID ++ +TL N + + I+ Sbjct: 237 ILDNCEHMIDAAATMAETLVHLCPNVSVLATSRELLRIE 275 >UniRef50_D1TLZ3 Transcriptional regulator n=3 Tax=Burkholderia RepID=D1TLZ3_9BURK Length = 849 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 92/280 (32%), Gaps = 22/280 (7%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + G + + ++RNG ++ + R +D+L+ A+ GE++S +L D VWK S+V + Sbjct: 7 LTFGPFRIDFPQRVLTRNGDEVRIGSRALDILIVLAERGGELVSTRQLRDQVWKESVVDD 66 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP- 124 + +S LRK+L D + YI RGY+L PV + ++P P Sbjct: 67 GALRVHVSTLRKALSD-GQSESRYIVNDNGRGYRLAAPVHSTRATQVTAPAPTAPTSTPD 125 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTR 184 E+ A + + + +R L Sbjct: 126 ESARALPVTLTRVIGREDVIDGLTDQLPERR-------------LLTIAGPGGIGKTTVA 172 Query: 185 LPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVG-------DLVATSLNTFSTF 237 + ++ + S ++ +GV + SL Sbjct: 173 VAIAHRFCGRTGIRALFVNFAPVSDKASVASTVASTLGVAVFSGNPVPDLIASLGDTPIL 232 Query: 238 MVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 +V D + ++ + + L + + Sbjct: 233 LVLDNCEHVVEAVAQVAEQLLQGASGVHLLVTSREPLRAD 272 >UniRef50_B1M5U0 Transcriptional regulator domain protein n=3 Tax=Rhizobiales RepID=B1M5U0_METRJ Length = 525 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 78/512 (15%), Positives = 151/512 (29%), Gaps = 30/512 (5%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + R G + + + ++SR+G ++ +EP++ DLL + V+SRD+L++ VW IV+ Sbjct: 2 IYRFGPFTLDSARRELSRDGAEIAVEPQVFDLLRVLIERRDRVVSRDDLLEAVWNGRIVS 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + I+ R ++ D +I T+P++G + + V + E I Sbjct: 62 EATLGSRINAARTAIGDTG-TGQRWIRTLPRKGVRFVGAVREAASEVSPGIAPEDAAEPG 120 Query: 125 EAVPATD--SPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLD 182 A L N + PEQ + L + F+ Sbjct: 121 VTWRAGPRLPAVAVLPFTNMSADPEQDYFADGMTEEIITALSRVSGLFVIARNSTFTYRG 180 Query: 183 TRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATS----LNTFSTF- 237 + + + L + V + + QL A L A S L+ Sbjct: 181 AAIDVRRVGQELGVGYVVAGSVRRGGSRLRITGQLVDAGTGAHLWADSFDGGLDDVFALQ 240 Query: 238 -MVHDKINYNIDEPSSSGK--TLSIAFVN-----QRQYRAQQCFMSIKLVDNADGSTMLD 289 V + I+ + L R RA A LD Sbjct: 241 ERVAARAAAAIEPTLQLAEIRRLGRDAPAHPDAYDRLLRANARLADFTAAGMAAALDHLD 300 Query: 290 KRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKI------LPHRGALLTNFYQA 343 + + G A+ Q E + + + A Sbjct: 301 EALALDPGYAPAMAAAAYCRAQCHFQGWIAQGEAERAAAVRLAWGAVERAPGDAQVLWMA 360 Query: 344 HDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 403 + + + RA +L G + +P AL + + + A Sbjct: 361 AFAVWNMSETGRERARDLFGRALLVNPNS-------ALALTLAGWIETMCGRAEAGRAMV 413 Query: 404 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG-IDLEMSWLNYVLLGKVYEM 462 + P ++ + AV+A+ + ++ + + L + Sbjct: 414 ERALQLNPRDPRGWLMSGVMAVAAVSEADYPKAIRWAERALAQNRRFAVALRALAVAHVG 473 Query: 463 KGMNREAADAYLTAFNLRPGANTLYWIENGIF 494 G A A + P ++ F Sbjct: 474 LGQPERARQAVAELLEIEPELTVSGFLARIPF 505 >UniRef50_C3KKU6 Putative transcriptional regulator n=1 Tax=Rhizobium sp. NGR234 RepID=C3KKU6_RHISN Length = 927 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 100/275 (36%), Gaps = 17/275 (6%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + G + + P+ + RNG + L R ID+L+F H GE+ + E++ VW + Sbjct: 2 EDAFHFGSFSIAPARRSLLRNGSVIPLGSRAIDILLFLLSHPGELKTNAEIVRQVWPDTF 61 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 V + +S LRK+L D + P +IA VP RGY+ + P+ L Sbjct: 62 VEEANLRVHLSALRKALGDT-QREPQFIANVPGRGYRFIAPIERRGRAVVSSPSLLRL-- 118 Query: 123 IPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLD 182 + P + + + R T GI + VA + + Sbjct: 119 ------RAERPPPRIFGRERVVATILDQLGRGRLVTVAGPG------GIGKSTVARAVVS 166 Query: 183 TRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDK 242 S+ + + +++ S+ LS + +A +L + + +V D Sbjct: 167 NLTSDSEVLWIDLSEFANGDLIPTVVA--SALGVLSRTDDIIRDIALALQSRALLLVMDS 224 Query: 243 INYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 + + + + L N R + + + Sbjct: 225 CEHVVVSAAEFVENLLADTANLRILATSREPLRAE 259 >UniRef50_Q12QP4 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12QP4_SHEDO Length = 1131 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 74/449 (16%), Positives = 146/449 (32%), Gaps = 16/449 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + G+W + P N + LEP+ +D+L+ Q G+VLS D+++ W Sbjct: 1 MSDNMFFFGDWQINPESNSLRCGDVVKQLEPKAMDVLLLLCQSDGDVLSSDDIVKLCWGD 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVI----WYSEEEGEEIM 116 + ++ V ++I++LRK+L D +P YI T+ KRGY+ + V + E Sbjct: 61 IPMGDNPVHKAITQLRKALGDK-ATAPTYIETIRKRGYRTLASVEFPLGHQTHAEIASWQ 119 Query: 117 LSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFF-------FLLSL 169 SP P A D+ +T + + K F + L++ Sbjct: 120 GESPFPGLRPYQAKDAQVFFGRSAQISTLLGRIAEQVKFGRAFCLLLGPSGSGKSSLVNA 179 Query: 170 GICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCN--SWSSPYQLSYAIGVGDLV 227 G+ L+ + D S + + L D M + + W + + D + Sbjct: 180 GVLPNLMGHNGYDGIGVCSHTTLDLADVSKDRLMTDLASAMLDWDINDEPVFDGFSADRL 239 Query: 228 ATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTM 287 A L ++ + ++ T S + + + L D + Sbjct: 240 AALLEEDIDAVIKLCKAALLSTNLAASLTSSSENTDTSTAPCHATYATPLLALFVDRLEV 299 Query: 288 LDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYL 347 L + + A LLE+L+ + + L + +L+ + Sbjct: 300 LLSSPQFSQPQREA-FVALLETLANSGAILVLSACRNDFYPSLVNYPSLMAGKSSGAHFD 358 Query: 348 LH-GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 406 L L + L S + A + + D + + Sbjct: 359 LAPPTRAELLQMIRLPASAAGLSWQQDNTSAMGLDELLCVEAASNPDALPMLQYTLQELY 418 Query: 407 IVTLPELNNLSIIYQIKAVSALVKGKTDE 435 + +++ GK + Sbjct: 419 LQRSESGELKLEVFRALGGIEGSIGKKAQ 447 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 58/440 (13%), Positives = 123/440 (27%), Gaps = 75/440 (17%) Query: 105 IWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFF 164 W E +G+ +L+ P+ EAV + +P SL+ Q Q +++ + Sbjct: 554 RWRDEAKGKAYLLAEGKPLQEAVALSSNPLFSLDNQE------QGFIQTSIKRAQIKRWT 607 Query: 165 FLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSS----PYQLSYA 220 +++ + L S L + + + L R N++ ++ ++ Sbjct: 608 RRITISLLCLLSFTSVLMSLKSLDAEQQALEKRLEAENLLGFMVGDFADKLRSVGRMDLL 667 Query: 221 IGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIA---------------FVNQR 265 G+ + + K N N P +L Sbjct: 668 DGISNKALEY-FSRDDANPESKSNANSLLPHWLSTSLGFTSSKASFEARFQHAQTLEAMG 726 Query: 266 QYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLSKALN-QPWPQRM-- 322 + + + + +LDK Y T +L + + L P+ Q Sbjct: 727 EVAYSRGKLDEAIKAFEAAKLLLDKLY--TEDKANPTLLKVLGANAFWLGQIPYAQSNWP 784 Query: 323 ------------QETLQKILPHRGALLT---------NFYQAHDYLLHGDDKSLNRASEL 361 + L + P + + NR+ L Sbjct: 785 LAEKYLTLYRDYSDALMTLTPDDVDAWVELSYALNSLGSLALKQLDYQAANTAFNRSLSL 844 Query: 362 LGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQ 421 + + P+ Y R+++A LA +N I NI L N + + Sbjct: 845 KTQALVKDPKNDYLRSDRA-----------DTLNWLAKINIPIGNIDEALTLYNEAQLE- 892 Query: 422 IKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 481 + ++ + L Y K + +++A A P Sbjct: 893 -LEMLLTKANDDANLMSRLSYIYTNQAQLLRY--QSKFEQATVKAKKSAQLLKKALKQDP 949 Query: 482 GANTLYWIENGIFQTSVPYV 501 +++ + +V Sbjct: 950 SNEQ--------WKSDLTHV 961 >UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n=3 Tax=Burkholderia cenocepacia RepID=B1KAJ7_BURCC Length = 493 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 96/279 (34%), Gaps = 36/279 (12%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G V S + R+G+ + + R D+L +G ++++DEL+ VW ++V + Sbjct: 3 LGTLEVDLSTRSLRRDGKAIHVGSRAFDVLAVLLSAAGRLVTKDELMAAVWPGTVVEENN 62 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 + IS LRK L I TVP RGY+L ++ Sbjct: 63 LQVHISALRKLLGP----QRDLIVTVPGRGYQL----------------------TQKSA 96 Query: 128 PATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPM 187 P+ + + Q + P + + R + L + I + A T + Sbjct: 97 PSANLTPATPLRQGDSDIPRRHGALTGRDSLVSNIAAILDTTHILTLVGAGGVGKTSAAI 156 Query: 188 SKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVG----------DLVATSLNTFSTF 237 + ++ R V S + A G D + +L T Sbjct: 157 EVAHAAVSGRFDITRFVALSDAASPEAVLQKIATAFGLSIRDDRSAVDALVAALPRDRTL 216 Query: 238 MVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSI 276 +V D + ID + ++ + N R + + + Sbjct: 217 LVLDNAEHVIDAVARLVDSVCMRLGNLRVLVTSREPLRV 255 >UniRef50_Q3KE15 Putative transcriptional regulator n=3 Tax=Proteobacteria RepID=Q3KE15_PSEPF Length = 959 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 73/439 (16%), Positives = 130/439 (29%), Gaps = 29/439 (6%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 G + V P ++RNG + + R +DLL+ + G VLS+ +LID VW S+V Sbjct: 16 FIFGPFCVVPGKRLLTRNGVAVEIGGRALDLLIALLEQPGRVLSKYDLIDKVWPDSVVAE 75 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + ++ LR+ L D E+ YIAT GY + P+ + + Sbjct: 76 GSLRFHMTGLRRILGD-GEEQARYIATQVGVGYAFVAPLERKQTAVHPAPIATRATEGVC 134 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 ++P Q P + FT SL I VA + + Sbjct: 135 SLPPRARLIGREIDLQLVIDHMQQP---RLFTIVGPGGVGKTSLAIEVA----HRIAAQG 187 Query: 186 PMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINY 245 S + L + + + S P Q + V + L +V D + Sbjct: 188 YERVSFVDLAQVEDSALVPSALARSLDIPVQAEDPMFV---LLAHLREQRLMLVIDNCEH 244 Query: 246 NIDEPSSSGKTLSIAFVNQRQYRAQQCFMSI--KLVDNADGSTMLDKRYVITNGNQLAIQ 303 ID S + +S + + + + V + + + LA Sbjct: 245 LIDAVSILLEQISDTAPEVGVLATSREPLRVRGEYVHWLNPLEFPREPQHLGVEELLAFP 304 Query: 304 NDLLESLSKAL----------NQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDK 353 L +L Q Q LP A + + Sbjct: 305 AIKLFVERASLSNATLLEAGGGQMIADICQRLEGMALPIELAAMRVASHGLKATHALLGE 364 Query: 354 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPEL 413 + V + +A++D P + L + + Sbjct: 365 RFSLGWSGRRTAV------PRHQTLRAMLDWSYDLLSPQERLALERFSVFVGPFSQEAAA 418 Query: 414 NNLSIIYQIKAVSALVKGK 432 ++ A +A + Sbjct: 419 QVVAESQHESATTAAILDD 437 >UniRef50_B9BNS9 Transcriptional regulator n=2 Tax=Burkholderia multivorans RepID=B9BNS9_9BURK Length = 963 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 93/274 (33%), Gaps = 9/274 (3%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 G++ + P+ ++ R + L R +++LV + +G+++ ++ L W + Sbjct: 5 DHCFTFGDFHLFPTQQRLLRGEIPIALGSRAMEILVVLIEQAGQIVDKETLTRRAWPTTF 64 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSE-EEGEEIMLSSPP 121 V + I+ LR++L D SP+ IA VP RGY+ PV+ Sbjct: 65 VEESNLRAQIAALRRALGD--GKSPLLIANVPGRGYRFTGPVVQNPAGASATVSRGRQQL 122 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 P + SP + + +K RF T GI +A ++ Sbjct: 123 PSADRRHNLPSPLARMIGRRRELATISGMLKEHRFVTIAGPG------GIGKTTIAIAAA 176 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHD 241 L + I D ++ S ++ L+ L + +V D Sbjct: 177 YEMLSDYRDGIFFVEIDSLLDARLLPGAIASVVGLTQHSEASESLLVEHLCSKHALIVLD 236 Query: 242 KINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMS 275 I+ + + L + + + Sbjct: 237 NCERVIEATAMLAERLLKHAPSIHLLTTSREALR 270 >UniRef50_Q1M6Q3 Putative adenylate cyclase/transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1M6Q3_RHIL3 Length = 955 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 64/479 (13%), Positives = 142/479 (29%), Gaps = 56/479 (11%) Query: 7 RVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH 66 GE+ + P + + ++ + + R +++L+ + GE++++DELI W +IV Sbjct: 18 SFGEFRLYPGRHLLVKDQEPVAVGSRALEILIALTERPGELVTKDELISRAWPNTIVEES 77 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEA 126 + I+ LRK+L + D+ + YIA VP RGY+ + P+ P+ EA Sbjct: 78 NLRAQIAVLRKALGE-DQSAARYIAAVPSRGYRFIAPLSRSE---------VKIHPVEEA 127 Query: 127 VPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLP 186 P N P+ + L V + Sbjct: 128 AP------------NNLPKQLTRPIGREEAIGILEGRIQRFRLVTVVGPGGIGKTTVGVR 175 Query: 187 MSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGD-------LVATSLNTFSTFMV 239 +++ + + + S P L+ + + + LV+ L +V Sbjct: 176 VAEELSSSYQHGVCFVDLAPLSHPSSLPSVLASLLRLPEITGDPISLVSAHLRDKHMLLV 235 Query: 240 HDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQ 299 D +D + +TL + + ++ + Y + + Sbjct: 236 FDNCELVLDAAARLAETLLREAPGISVLATSREALRVEG----------ESVYRLPPLDM 285 Query: 300 LAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRAS 359 + L + AL P + + D Sbjct: 286 PPLGAGLT--AADALAFPAIRLFVDRATSSGSEYAFDDDEAPIVTHICRQLDG------- 336 Query: 360 ELLGEIVQSSPEFTYARAEKALVDIV---RHSQHPLDEKQLAALNTEIDNIVTL--PELN 414 + ++ + A + + +++ L T I Sbjct: 337 --IALAIELAAGRVEAFGTRGIAELLNDRLRLLTGGRRTALPRHQTLAAMIDWSYGALST 394 Query: 415 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNY-VLLGKVYEMKGMNREAADA 472 + + A A + + ++ + + + L+ K + +AA Sbjct: 395 EEQTVLRALAAFAGEFSREAAAAVTFDSVANERDAPVQLAQLVAKSLLAVDTHGKAARY 453 >UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseudomonas fluorescens RepID=Q3KEV5_PSEPF Length = 928 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 96/281 (34%), Gaps = 28/281 (9%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 + G + + P + + L L R +D+L+ H+GEV+S+ +LI VW S+V Sbjct: 7 QAIGFGPYRIHPGQRLVLEGDQPLRLGRRAMDILLILLAHAGEVVSKQQLIAGVWPDSVV 66 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + + ++ LRK+L D + YI TV +RGY + PV+ S E+ P Sbjct: 67 EDINLRVHMAALRKALGD-GQAGQRYIVTVAQRGYSFVAPVVLQSIEQ-------RPTTA 118 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 + + + + + +R V Sbjct: 119 NLGRHNLPLRRTRMIGRQSVVDSLMTQLPRQR-------------CITLVGPGGIGKTTV 165 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVG-------DLVATSLNTFST 236 L +++ I I + + + S L+ + + + SL Sbjct: 166 ALRVAEQLIGRYRDGIRLLDLAPLKHPGSICSHLAALLDLSLHDGEPMACLINSLRERQM 225 Query: 237 FMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 +V D + ID + +++ + + + Sbjct: 226 LLVIDNCEHLIDAVALLSESILRGAPQVHILATSRESLRAE 266 >UniRef50_B1YN09 Transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=B1YN09_BURA4 Length = 481 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 96/276 (34%), Gaps = 22/276 (7%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V+ +GE+ + + + + GR++ L R D+L SG ++S+DEL+D VW Sbjct: 20 EHSVIALGEFELNLGMRALYKAGREVPLGSRAFDILSVIVLASGRIVSKDELMDTVWPGV 79 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V + + +S +RK+L D I TVP RGY+ V S E G ++ Sbjct: 80 FVEENNIHVHLSAVRKALGD----HRQLIDTVPGRGYRFKV-FDGMSAEPGRDVPTERHA 134 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 P+ P H L + ++ + F L + Sbjct: 135 PLFRNADTMTPPRHRLPGR-------RTLLGRATALDEIEGRFALSRVVTLTGPGGVGKT 187 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHD 241 + + D+ + ++ + + T +V D Sbjct: 188 CLAIEHAHRTTAAGTSDVVFIDLEEARSLAAVSQIGPAPSRPA----------GTLLVLD 237 Query: 242 KINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 + +DE + + L + + R + + I Sbjct: 238 NAEHIVDEVADLVERLIGQWHSLRVLLTSRERLRIA 273 >UniRef50_A6U8S7 Transcriptional regulator, winged helix family n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6U8S7_SINMW Length = 922 Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 95/277 (34%), Gaps = 18/277 (6%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M P G + + P ++ R+G +L + + LL+ + G ++S+ EL+ W Sbjct: 1 MSVPRFTFGPFELDPLRLELRRDGVKLRVGAKACRLLLALVERPGHIVSQKELLAAAWSG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 V + + I LRK+L + I TVP+ GY PV + P Sbjct: 61 LNVEDVNLRVHIVALRKALS-GVANGAFNITTVPREGYVFAGPVSV-----SAAPAIEMP 114 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 P VP +L + A + + R T + + G+ +A ++ Sbjct: 115 ASPPARVPRQ---LSTLFGRREALANLGDALAAHRIVTI------VGAGGMGKTALALAA 165 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 ++ + + +++ + + V + +L + +V Sbjct: 166 IEEHAGTECVFVDFSTSVSSLHVQGCIFEALELEGTPND---VAAHIVRALANKTILLVF 222 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 D + + E ++ L+ + + + Sbjct: 223 DNCEHVVGEVAAMAARLTSRTEGVSILATSREPLRVA 259 >UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum RepID=Q89V41_BRAJA Length = 516 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 88/524 (16%), Positives = 167/524 (31%), Gaps = 35/524 (6%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++ + +++ G + L+P++ DLL++ V+S+D+LI +W IV+ Sbjct: 2 RFCFENNVLDGDLRELTCAGVAVPLQPQVFDLLLYLVAQRARVVSKDDLISQIWSDRIVS 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + I+ RK+L D D + I T+P++G++ + V E+ + + P P Sbjct: 62 DSALNSRINAARKALGD-DGATQRLIKTIPRKGFRFIGEVR---EDVAVTLAPAEPAAAP 117 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTR 184 A L +N + PEQ + +F Sbjct: 118 ARTVADRPAIAVLAFENMSGDPEQDYFGDGISEDILTALSKQRWFMVIARNSSFIYKGRA 177 Query: 185 LPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTF--STFMVHDK 242 + + + L R I V K+ QL+ A L A + + F V D+ Sbjct: 178 VHIRQIAEELGVRYIVEGSVRKADKRVRITAQLNDAASGSHLWAERYDRELVNVFAVQDE 237 Query: 243 INYNIDEPSSSGKTLSIAFVNQRQYRAQ-----------QCFMSIKLVDNADGSTMLDKR 291 I I + F + R+ A + + D+ +L++ Sbjct: 238 ITNAIVAAIEPQIHAAENFRSHRKPPASLDAWDLLMRALSHYWRVTRQDHEAAQALLERA 297 Query: 292 YVITNGNQLAIQNDLLESLSKA------LNQPWPQRMQETLQKILPHRGALLTNFYQAHD 345 I A+ + A L + P L + + Sbjct: 298 IGIDPNYGQALSVLAANHMFGAHLGWVELARVAPIAEAAALAAVRCDHEDAWAHTGLGSV 357 Query: 346 YLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 405 Y + L A + + +P F+ A+ + S + A Sbjct: 358 YFS---TRRLADALSEFEQALALNPNFSLAQG----YYALALSYAGRSKDSFEA---AQR 407 Query: 406 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQ-AINTGIDLEMSWLNYVLLGKVYEMKG 464 I P +L+I + I + + + DE+ A Y +L M G Sbjct: 408 AIRLSPRDPSLAIYHGIAGYARFTERRYDEAIALAREAIRHRGDLTGAYRVLAVSAGMTG 467 Query: 465 MNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKF 508 A A +PG + + + + YL+ F Sbjct: 468 DGMLAEMALGELRRTQPGISLHWIATQLPWASDADR-EHYLEGF 510 >UniRef50_B8ESP8 Transcriptional regulator domain protein n=4 Tax=Rhizobiales RepID=B8ESP8_METSB Length = 522 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 74/535 (13%), Positives = 163/535 (30%), Gaps = 47/535 (8%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + ++ + + ++ NG + +EP++ LL F + V +++E++ VW +++ Sbjct: 2 IYLFEDFELDTARVELRTNGVAIAIEPQVFALLCFLVESRDRVATKEEIVARVWNGRVIS 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + I R++L D D + I T+ G++ + V + + P Sbjct: 62 DSAIASRIKSARRALGD-DGGAQRLIRTIHGIGFRFVADVRLAATRIESIAPTAETAPDT 120 Query: 125 E---AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 + AV + L + Q + L L + +F Sbjct: 121 DRSQAVETSRPSIAVLPFRLLGAADPQFSIGDALPHDLITELSRLRWLFVIARGSSFRFR 180 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHD 241 + + R LN R +V ++ +LS A G + + T ++ + Sbjct: 181 GAEPDVGRVRTALNVRYCLSGVVEIHHSAMIISVELSDAEDSGVVWSERFRTQASAVHEI 240 Query: 242 KINYN------IDEPSSSGKTLSIAFVNQRQYRAQ-------QCFMSIKLVDNADGSTML 288 + ++ + + + A DN+ + + Sbjct: 241 REEIVRAVINALELQIPLNEARRARLKSPERLDAWSAYHLGLHHMYRFNKADNSVATALF 300 Query: 289 DKRYVITNGNQLAIQNDLLESLSKAL---------NQPWPQRMQETLQKILPHRGALLTN 339 ++ + G A A QR E + P Sbjct: 301 ERAAAMEPGFARAYAGLSFTHFQSAFLSYADNVSEAANLAQRAAEQSLERDPVDPFGNFT 360 Query: 340 FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAA 399 +A L+ + L +P + A+ +A + + A Sbjct: 361 MGRAFWLC-----GDLDASLPWLERANALNPNYAQAKYSRAWAQALLGNAASSRANVDEA 415 Query: 400 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKV 459 L P L ++ ++A S LV G++ +A S + L+ + Sbjct: 416 LA-------LSPLDPLLYGMFGVRAFSHLVMGES---AEAAEWAERAARSPGAHALIEMI 465 Query: 460 Y----EMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVP--YVVPYLDKF 508 + G + A +A N ++ F+ + V L++F Sbjct: 466 AVLAHGLNGNDARAKAWARSARARVCDLNKAAFLRAFPFRDQLMLKRVSDELERF 520 >UniRef50_B0SVQ0 Transcriptional regulator, winged helix family n=1 Tax=Caulobacter sp. K31 RepID=B0SVQ0_CAUSK Length = 954 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 98/283 (34%), Gaps = 21/283 (7%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + G +L+ P ++R G + + R +++L+ G VL+ +L++ W Sbjct: 14 DESQAAFGPYLLAPGRRLLTRQGVPVAVGARALEILIALLSEHGRVLTHRQLVERAWAGL 73 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V + ++S LRK+L D E YI V RGY + PV W E + P Sbjct: 74 TVEESNLRVAVSGLRKTLGD-GEGGARYIENVVGRGYCFVAPVRWLEAEPADASPSIVPA 132 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 + P+ + + + + + +L V Sbjct: 133 KLRGGSTRLPIPAARVIGRENVVEKLVAALGDR-------------ALVTVVGAGGLGKT 179 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIG-------VGDLVATSLNTF 234 ++++ + ++ + + + ++ A+G + + + T L Sbjct: 180 TVAALVAQALKTRAGVEAVFVDLSATADEAALTKAVAVALGLDGPGRDLEEAILTCLANH 239 Query: 235 STFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 +V D + ++ ++ L+ R + + ++ Sbjct: 240 RVLLVLDGCEHVVEAVAAFCDRLTRRLDLYRVLATSREALRVE 282 >UniRef50_C5D1G0 Transcriptional regulator, winged helix family n=1 Tax=Variovorax paradoxus S110 RepID=C5D1G0_VARPS Length = 961 Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 100/277 (36%), Gaps = 17/277 (6%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 +V G + + + ++RNG L L R +D+L+ + V+S++EL+ W ++ Sbjct: 17 EIVSFGPFTLRVNERLLARNGVPLDLGGRAMDVLLALIARANAVVSKEELLAEAWPGVVI 76 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 ++ + I+ LR++L D +D Y++ + RGY + + E + P Sbjct: 77 SDGSLRYQITMLRQALGD-GQDGARYVSNIVGRGYCFVAKISRTFAEPEVQAQRDESP-- 133 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 P +P L ++ + + RF T + + G+ VA + Sbjct: 134 --VEPGLPAPPGLLVGRSGDLAAIAAQLAKGRFVT------LVGTGGVGKTTVAVRTGHD 185 Query: 184 ---RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 + + L + + + + + + + L +V Sbjct: 186 LLADFAGAVVFVDLATLTDPSLVPTAIASMLRLSVRSADPVPS---LISYLRERRMLLVL 242 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 D + I +S + + A + + + ++ Sbjct: 243 DNCEHVIAAAASLAERIFQAAPSIHILATSREALRVR 279 >UniRef50_A2W5F3 Putative uncharacterized protein n=1 Tax=Burkholderia cenocepacia PC184 RepID=A2W5F3_9BURK Length = 997 Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 111/308 (36%), Gaps = 16/308 (5%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + ++++G V I R+G L + R +D+L + SG V+S+D+++D VW Sbjct: 89 EAAMIQIGTLSVDFEQRDIRRHGASLRIGARALDILEVLHRASGSVVSKDDIMDAVWPGL 148 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSE-EEGEEIMLSSP 120 IV + + ++ LRK+L S I TVP RGY L+ + E + Sbjct: 149 IVEENRLQVHVATLRKALG----ASRDLIKTVPGRGYLLVASASPGPDLVPAAEAPAVAV 204 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 PP A+P + S + Q +R + + GI +A Sbjct: 205 PPAVAALPDACASSLLAPLVGRDAEIAQIVDMLERTPVI----TLVGAGGIGKTSLAVRV 260 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 + R+L + + + + + + + T +V Sbjct: 261 AHGVRSRAHERVLFVELARASTRDDMLIALAAELGLDTPGVPAIERIGDAFATSRCLLVL 320 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL 300 D + +D +S +TL+ + R + + I +L + + + Sbjct: 321 DNAEHIVDLVASLVETLTSGAGSLRVLVTSREPLHI------SAEAVL-RMSPLAVPDGN 373 Query: 301 AIQNDLLE 308 A +++ Sbjct: 374 ASAAEIVR 381 >UniRef50_B1KA17 Transcriptional regulator, winged helix family n=8 Tax=Burkholderia RepID=B1KA17_BURCC Length = 973 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 112/305 (36%), Gaps = 16/305 (5%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++++G V I R+G L + R +D+L + SG V+S+D+++D VW IV Sbjct: 1 MIQIGTLSVDFEQRDIRRHGASLRIGARALDILEVLHRASGSVVSKDDIMDAVWPGLIVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSE-EEGEEIMLSSPPPI 123 + + ++ LRK+L S I TVP RGY L+ + E + PP Sbjct: 61 ENRLQVHVATLRKALG----ASRDLIKTVPGRGYLLVASASPGPDLVPAGEAPAVAVPPA 116 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 A+P + S + Q +R + + GI +A Sbjct: 117 VAALPDACALSLLPPLVGRDAEIAQIVDMLERTPVI----TLVGAGGIGKTSLAMRVAHG 172 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKI 243 ++ R+L + + + + D + + T +V D Sbjct: 173 VRSRAQERVLFVELARASTRDDMLIALAAELGLDTPGVPAIDRIGDAFATSRCLLVLDNA 232 Query: 244 NYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQ 303 + +D +S +TL+ + + R + + I +L + + + A Sbjct: 233 EHIVDLVASLVETLTSSAGSLRVLVTSREPLHI------SAEAVL-RMSPLAVPDGNASA 285 Query: 304 NDLLE 308 +++ Sbjct: 286 AEIVR 290 >UniRef50_B8ESY3 Transcriptional regulator, winged helix family n=1 Tax=Methylocella silvestris BL2 RepID=B8ESY3_METSB Length = 956 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 63/371 (16%), Positives = 124/371 (33%), Gaps = 19/371 (5%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + V G + ++ S +SR+G + + R +D+L+ + +GEV+S EL+D VW + Sbjct: 8 LSGEAVLFGPYRLSASERLLSRDGAPVAISGRALDILIALIERAGEVVSVQELLDRVWPQ 67 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 +IV + I+ LR+ L ND Y+ VP+RGY ++ P+ + E I Sbjct: 68 TIVEEPNLRVHIATLRRVLG-NDSQGSRYVINVPRRGYSIVTPLYRLAREGAVAI---DA 123 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 I E P+ +P S+ ++ + SKRF + + VA + Sbjct: 124 TVISERQPSLPTPLQSMIGRSGTVAELSVQILSKRFISVIGPGG--IGKTTVAVAVAHAV 181 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 S + L+ ++ + + + L +V Sbjct: 182 RQHFGDDSVFFVDLSSIADKEDVASAVAAAIGCSVPGVDPEPF---ILAFLANKHFLIVF 238 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDN--ADGSTMLDKRYVITNGN 298 D + I+ + L + R + + I+ + K + Sbjct: 239 DGCEHVIEAAAPLAARLVGGAPSGRFLATSREALRIEGEEAYLLSALEGPAKDTPSADEA 298 Query: 299 QLAIQNDLLESLSKALNQPWPQRMQE--------TLQKILPHRGALLTNFYQAHDYLLHG 350 + L + + + +P L + + L Sbjct: 299 IASPAIQLFMERATSAGYSIELSDSDAPIVADICRRLDGIPLAIELAASRVGVYGILGTA 358 Query: 351 DDKSLNRASEL 361 D + A +L Sbjct: 359 DLLDHDAALQL 369 >UniRef50_A5ED47 Transcriptional regulator n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5ED47_BRASB Length = 972 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 45/326 (13%), Positives = 95/326 (29%), Gaps = 16/326 (4%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V GEW + ++ G + L R +++ + G+++++DEL+ VW + V Sbjct: 30 VFATGEWEIDLDRRELRARGGPVPLGGRAFEIMEVLIKSEGKLVTKDELLSQVWPGATVE 89 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + IS LRK+L + + T+ RGY+L+ + + Sbjct: 90 ENTLQVHISALRKALGPDR----EMLKTISGRGYRLLGTWAPRASGAVLRTSPVHFHAVS 145 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTR 184 A T+ P + + + R L G + Sbjct: 146 GATFQTNLPEATSELIGRDAAGQHL-----RNLLSTYRVVTLTGPGGIGKTRLALEVARS 200 Query: 185 LPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSY-AIGVGDLVATSLNTFSTFMVHDKI 243 L ++ ++ + L +A +V D Sbjct: 201 LVPDFHGDRFLVELASLSDPALLPSAVAGAMGLRLGEDAASHTIAQITGGKKLLLVLDNC 260 Query: 244 NYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQ 303 + I+ + +T+ + + + I DG + + A Sbjct: 261 EHVIEAAARFAETIVRLCPHVSILATSREVLRI------DGEYVYRVPPLDVPPENQADP 314 Query: 304 NDLLESLSKALNQPWPQRMQETLQKI 329 +L+ + L Q Sbjct: 315 KRVLDHSAARLFVSRAMASQADFLPD 340 >UniRef50_Q01WH4 Transcriptional regulator, CadC n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01WH4_SOLUE Length = 616 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 74/485 (15%), Positives = 144/485 (29%), Gaps = 68/485 (14%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + G + V P + R + L L P+ + L+ ++ G ++ + E++ +W S Sbjct: 22 EPQAYGFGPFRVLPCERVLRRGDQTLPLPPKAFETLLLLVRNPGHLMRKGEMMKALWPDS 81 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V + +IS +RK+L D+ D YI TVPK GY+ + V + + Sbjct: 82 FVEEVNLANNISLVRKTLGDSAGDC-GYIQTVPKLGYRFLPAVTGVWGKGPPTADSARLE 140 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 P +L + + L + + +L+A Sbjct: 141 RQPA---ERVVRFLALPFRMLLGDERIDFLGRSLPEAISASLAGLSCMTVRSSLLAAQFS 197 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHD 241 ++R +PR I + + Sbjct: 198 ESR---------PDPRRIAREAEVDLVLAGTIL--------------------------- 221 Query: 242 KINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLA 301 + Q ++ +LV G+ + N Sbjct: 222 -CEH------------------------DQVRVNTELVQAPTGTLLFSYSCEAKRDNIFE 256 Query: 302 IQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASEL 361 IQ+ L++ + +AL +R + TL+ +P + +A+ ++L A +L Sbjct: 257 IQDILVDKIVEALMLRLTERERRTLKHDVPGSARAYEFYLRANHVARERSVENLALARDL 316 Query: 362 LGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQ 421 E V P + A A + L +LSI + Sbjct: 317 YRECVDEDPNYAPAWARLGRCYRFLEKFGEDGPQSLELAQWAFH--RAFALNPDLSIAHN 374 Query: 422 IKAVSALVKGKTDESY-QAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 480 + G + + + + L + G+ E+ A+ A L Sbjct: 375 LYTQIEADLGDAQGAMVRLLEHSETHPNDPELFAGLVQACRFCGLLDESVSAHHRARRLD 434 Query: 481 PGANT 485 A T Sbjct: 435 SKAVT 439 >UniRef50_Q39G50 Transcriptional regulator, winged helix family n=11 Tax=Burkholderia RepID=Q39G50_BURS3 Length = 877 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 99/274 (36%), Gaps = 19/274 (6%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++R+G V +I NG L + R D+L + GEV+S+DE++ VW ++V Sbjct: 1 MIRIGPLHVLLEKREIRLNGEPLRIGNRAFDVLELLIEAEGEVVSKDEIMRRVWAHTVVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + I+ LRK+L + I T RGY+L+ + E+E + +S P Sbjct: 61 ENNLQVQIATLRKALGADRGR----IVTAAGRGYRLVA---VHDEDETSALAQTSRCPAE 113 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTR 184 + S Q ++ L+ G A R Sbjct: 114 PRILFDPSMLVG----------RQCMIEEILAELERSRVVTLVGAGGIGKTRAAEETAAR 163 Query: 185 LPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIG--VGDLVATSLNTFSTFMVHDK 242 + + ++ + ++ +S +++ +G + + L ++ D Sbjct: 164 VAAQFEDGIAFVPLASVSNPRFALDALASALRMAAPVGGLSLEAIVAHLTNRRLLILLDN 223 Query: 243 INYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSI 276 + ID + T++ A + + I Sbjct: 224 CEHLIDAAAQIASTITNANPGISVLATSREALRI 257 >UniRef50_Q89GU0 Blr6255 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89GU0_BRAJA Length = 946 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 55/405 (13%), Positives = 101/405 (24%), Gaps = 48/405 (11%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + G + + P + + G L + R +D+L+F A GEV+ + EL+ +W Sbjct: 6 EDSAISFGPFRLFPKSRLLEKEGSPLHVGGRALDILIFLAGRPGEVVDKRELVKRIWADV 65 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V + ++ LRK+L D S Y+ VP RGY + L+ Sbjct: 66 NVDEGSLRFHVAALRKALGDTG-KSARYVVNVPGRGYSFVA-------------SLAQAA 111 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 P VP P SL +Q V + L V Sbjct: 112 PPVAPVPLDIVPPRSLPVQ------LAKMVGREEVIEKISNGLSLYRFMTVVGPGGIGKT 165 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGV-------GDLVATSLNTF 234 + + R + ++ ++ A+G+ + T L Sbjct: 166 AVAVTVGHRRSQDFGGRVFFVDFGPLRDASHIATTIASALGLTISAEDPTPALLTFLKAG 225 Query: 235 STFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK------------LVDNA 282 ++ D + +D + + + R + + + Sbjct: 226 PALLIFDSCEHVLDNLAPLVERIVREAPQLRVLATSRESFRSEGERIFRLFPLDCPPERE 285 Query: 283 DGSTMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQR------MQETLQKILPHRGAL 336 D Y I A P ++ R Sbjct: 286 DLGVDEVLTYPAAQLFIERIAQSSGPFQLSAEEAPLVASICRRLDGIALAIELAAGRVNA 345 Query: 337 LTNFYQAHDYLLHGD---DKSLNRASELLGEIVQSSPEFTYARAE 378 A + A Sbjct: 346 YGIAGTASLLDSRFSLQWRGRRTAVPRHQTLAAALDWSYDLLPAA 390 >UniRef50_Q1MMK4 Putative transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MMK4_RHIL3 Length = 954 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 48/341 (14%), Positives = 104/341 (30%), Gaps = 24/341 (7%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 G+ P+ + + + R IDLL + G V+S+DEL W V Sbjct: 10 TTYCFGDCRFIPARQLLLHREVPIRVGSRAIDLLHALVRRPGIVVSKDELFRAAWPNVFV 69 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + +I+ LR++L + D IATVP RGY+ + P+ + + + Sbjct: 70 DESNLKVNIAVLRRALAQVEPDL-TCIATVPGRGYRFVAPLRVLGVADEAALSDAVRGIS 128 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 E +P + + +++ T S+ + A SL Sbjct: 129 GE----LPAPPALIGRDEAMADLAGALAETRLLTIVGPPGVGKTSVAVATARQVGESLKD 184 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKI 243 + + +P+ + + +C S+ + + L +V D Sbjct: 185 GVCFVDLAAIDSPQLVAPAIA-FACGLNSNLVN------ILAGLVEMLRDRELLLVLDNC 237 Query: 244 NYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQ 303 + ++ ++ L+ A + + + + Y + Sbjct: 238 EHVLNAAATVADHLNHALPRLLVVTTSREPLRCRR----------ESVYRLAP--LRFPP 285 Query: 304 NDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAH 344 + AL+ + + + + A Sbjct: 286 AGSELDAAAALDFSAVELLVQRAVTQGYRLDDADASSLAAI 326 >UniRef50_Q98JB4 Adenylate cyclase n=1 Tax=Mesorhizobium loti RepID=Q98JB4_RHILO Length = 541 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 73/484 (15%), Positives = 153/484 (31%), Gaps = 34/484 (7%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 ++ + ++ R + +EP++ DLL + ++ V+S+D+L+D VW+ IV++ Sbjct: 28 YLFEDFALDGDRRELRRGNSLIAVEPQVFDLLQYLIRNRERVVSKDDLVDAVWQGRIVSD 87 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + ++ R +L+DN + + T P+RG++ + V + E E P Sbjct: 88 ATLASRVNAARSALQDNG-EQQRLVRTFPRRGFRFVGTV--HEEAGAEATAPVEPAKPGL 144 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 +PA S L N + P+Q + L + +F+ + Sbjct: 145 GIPARPS-IAVLPFVNLSGDPDQDYFADGMVEDIITGLSRIRWLFVIARNSSFTYKGRAV 203 Query: 186 PMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINY 245 M + L R + V K + QL G L A + + Sbjct: 204 DMKQVGQELGVRYVLEGSVRKVGSRVRITGQLIDTEDGGHLWAE------------RYDR 251 Query: 246 NIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQND 305 + + + ++I+ V + ++ + D Y + + Sbjct: 252 ELTDVFALQDEITISVVAAIEPNLRRAEIERVKRQRPDSL----DAYDLFLRALPDVYTF 307 Query: 306 LLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLN---RASELL 362 + + ++ L + + I P + AH L +AS Sbjct: 308 MPQGAARGL------PLLDQALAIEPSYALVHGFAAWAHQTLFIRGGMQAEHSGKASRHA 361 Query: 363 GEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQI 422 ++ A A L + A + + + + + Sbjct: 362 HAAIEHGSGDAMALA---LAGFTIGLVEHDRKLADEAFSQALSLSASCAFVYAFGCVPVA 418 Query: 423 KAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 482 A E +N + + G + G + +A A A + PG Sbjct: 419 YGGDATRAIDWGEQALRLNPLDAMNCVPQGMIGFGNF--LAGRHEQAIAAGRRAVEMNPG 476 Query: 483 ANTL 486 + L Sbjct: 477 FSIL 480 >UniRef50_B2JV11 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia RepID=B2JV11_BURP8 Length = 966 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 10/282 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q +R+G+ V+ + +GR++ + R D+L G+++S+DE++ VW + Sbjct: 37 QMTTIRIGQIEVSLDHRDVRLDGRKVPIGSRAFDILALLIAARGDLVSKDEIMRAVWPTT 96 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 +V + + IS LR++ D E IATVP RGY+L++ + S Sbjct: 97 VVEKNNLQVHISALRRAFGDERER----IATVPGRGYRLIMQAELGAHAAPTRDAASERE 152 Query: 122 PIPEAVPATDSPSHSLNIQNTATPP-----EQSPVKSKRFTTFWVWFFFLLSLGICVALV 176 ++PA + A P E + KR + + GI + Sbjct: 153 ATGMSLPAVSEAARPARRPLPARVPELIGREAALDGVKRALRAHQAVTLVGTGGIGKTRL 212 Query: 177 AFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSL-NTFS 235 A ++ P + + + A + Sbjct: 213 AVEVAHAVQQDFADGVVFVPLAAVYDAQSALDALAFAMRSRLSASRAALAQMAAEWRERE 272 Query: 236 TFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 +V D ++ ++ + L+ A R + + ++ Sbjct: 273 ALVVLDNCEQVLEIVAAMAEALTGAGSRMRVLATSREALRVR 314 >UniRef50_B2TAW9 Transcriptional regulator, winged helix family n=7 Tax=Burkholderia RepID=B2TAW9_BURPP Length = 1014 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 106/312 (33%), Gaps = 31/312 (9%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 ++ ++ +G + + + + R+G L L R D+L +G ++++DEL++ VW Sbjct: 33 LENDMIELGRFQIDLEMRTVRRDGEALHLGSRAFDILAVIVSAAGRLVTKDELMNAVWPN 92 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 ++V + + +S LRK L + I TVP RGY+L+ ++ P Sbjct: 93 TVVEENNIQVHLSALRKILGADR----HLILTVPGRGYQLV---------HRQQPAPVRP 139 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 A SP L ++ A + ++ T + + GI +A + Sbjct: 140 ASRVCAGRPLPSPKTRLVGRDAAIEQIHAMLRKAHVLT------LVGAGGIGKTSLAIEA 193 Query: 181 ---LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTF 237 + L + ++ + + A + Sbjct: 194 ARQAAEDYAEPVCFVELATLNTFDGVLGAIAEGCGLLTEGTTPAVAQLAAALAH--RHRL 251 Query: 238 MVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNG 297 +V D + I + + L + R + + I + + + Sbjct: 252 LVLDNAEHVIGCVAEIVEALIAESDSLRVLVTSREPLRIMP------EAVF-RVDPLDVP 304 Query: 298 NQLAIQNDLLES 309 + + ++L+ Sbjct: 305 HLHSTDAEILQQ 316 >UniRef50_A4JSN6 Transcriptional regulator, winged helix family n=5 Tax=Burkholderia RepID=A4JSN6_BURVG Length = 1032 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 113/352 (32%), Gaps = 31/352 (8%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 ++++G V I R+G L + R +D+L + SG V+S+D+++D VW IV Sbjct: 1 MIQIGTLSVDFEQRDIRRHGASLRIGARALDILEVLHRASGSVVSKDDIMDAVWPGLIVE 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + ++ LRK+L + I TVP RGY L+ + + P Sbjct: 61 ENRLQVHVATLRKALG----ANRDLIKTVPGRGYLLVASASAAAGPAPDVPEGGEPGQGM 116 Query: 125 EAV------------PATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSL--- 169 A A D + TPP + +++L Sbjct: 117 SAAAAPAGSVALVESAAPDLAALPDASHAVPTPPLVGRDAELAQIVAMLARTPVVTLVGA 176 Query: 170 -GICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVA 228 GI +A + R+L + + I + V Sbjct: 177 GGIGKTSLAAHVAHDARCHGRERVLFVELAAASTHDDMLIAIAAELGLDVDGIPAVECVG 236 Query: 229 TSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTML 288 + + +V D + +D + +TL+ + R + + I +L Sbjct: 237 AAFAESRSLLVLDNAEHIVDLVAKLVETLTSVAGSLRVLVTSREPLHI------SAEAVL 290 Query: 289 DKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNF 340 + + A +++ + AL + P A + Sbjct: 291 -RMSPLAVPASDASFDEIARCSAVALFLERVRA----AAPECPIDEAAVRLM 337 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+ ++ + + ++ G Q++L + +LL+F A H G V +++EL VW Sbjct: 125 QEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAAVWNGD 184 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + VT + +R LKD P YI TV GYK + Sbjct: 185 GFDSRTVTVHVKNVRHKLKD-GTKHPKYIETVWGVGYKFIG 224 >UniRef50_C8SMB1 Transcriptional regulator domain protein n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SMB1_9RHIZ Length = 501 Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 71/476 (14%), Positives = 132/476 (27%), Gaps = 72/476 (15%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V + G + + +SR + L P+ LL A H G V+ + EL+D VW V Sbjct: 8 QVFQFGGFTLDLGKGTLSRADQPAFLRPKAYALLTHLACHIGRVVPKSELMDTVWPGVFV 67 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 T +TQS+ E+RK L + + TV KRGY L+ E + I+ Sbjct: 68 TEDSLTQSVREIRKVLGEER------VRTVSKRGYMLVPETEAVPESGAQPIVAVLRFRN 121 Query: 124 PEAVPATDSP---------------------SHSLNIQNTATPPEQSPVKSKRFTTFWVW 162 A PA + + + + P + P R ++ Sbjct: 122 DGADPANQEIVDGFAEDIINGLARFGTVTVLARNSSFSFASHSPAEWPAIRSRIGADYLV 181 Query: 163 FFFL--------LSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSP 214 + ++ + A + R + + +DI +V + Sbjct: 182 EGSVRRQAERIIAAVSLIDAANSAQLWGDRYQAEAAGLFTIQQDIVEQIVGRLV----VK 237 Query: 215 YQLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEPSSSGK----TLSIAFVNQRQYRAQ 270 + TSL ++ +V + D S K A Y Sbjct: 238 VSNAGLTRASRRPVTSLASYE--LVLRGVALMRDPAQSDLKAAAALFEAAISKDPSYGLA 295 Query: 271 QCFMSIKLVDN----ADGSTMLDKRYVITNGNQLAIQNDLLESLSKAL------NQPWPQ 320 ++++ V N S++L K + + ++L + + Sbjct: 296 HTYLALSYVLNSEFGPTSSSVLAKARDLAERGIALSPDQATAHRIQSLVRLSMRDHQAAE 355 Query: 321 RMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKA 380 + ++ P + L A L ++ P Sbjct: 356 HHLQIALELNPGDAECIEQMGH-----LLTMRGRPLEALSWLARAIRIDPLNP------- 403 Query: 381 LVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDES 436 L L + + I A G + + Sbjct: 404 ---HWYQYDRSLALYMLGEYRPAAEALELA--TRPTPWIRTRLAACYAQLGNMEAA 454 >UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=A5UT44_ROSS1 Length = 261 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 2/114 (1%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + +G + P ++ N + L P+ +LL A H G V SR+EL++ VW S + Sbjct: 142 CIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSREELLERVWGYSYMG 201 Query: 65 -NHVVTQSISELRKSLKDNDEDS-PVYIATVPKRGYKLMVPVIWYSEEEGEEIM 116 V ++ LR L+ E S I+T GYKL P + +E G I Sbjct: 202 NTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLESPALLEAEVGGTGIH 255 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 2/104 (1%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + V+ G ++ +++ +G+ + L R +LL FA+H +V +R++L +W Sbjct: 130 RAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQRLWGE-F 188 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIW 106 H VT I LR+ +++ D +P YI TV GY+ Sbjct: 189 GDRHTVTVHIGRLREKIEE-DPANPRYIVTVWGVGYRFDGEARP 231 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + GE + + +++ +++TL + DLL++ A H G+V SR++L+D VW Sbjct: 133 DDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKLLDAVWGYQH 192 Query: 63 VT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 H V I+ LR L + D +P Y+ TV GYK Sbjct: 193 SGYEHTVNSHINRLRTKL-ETDTSNPKYVLTVWGVGYKF 230 >UniRef50_A1TS46 Transcriptional regulator domain protein n=2 Tax=Acidovorax RepID=A1TS46_ACIAC Length = 531 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 69/480 (14%), Positives = 133/480 (27%), Gaps = 77/480 (16%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 P +++ Q+ +G + L R D+L +G ++++ EL VW +V Sbjct: 24 PEFAFDHFVLKVRERQLLSHGCPVALGARAFDVLCTLVHRAGTLVTKSELFRQVWPGMVV 83 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + + +S LRK + + I T+P +GY+ + V G Sbjct: 84 EENNLQVHVSALRKLVGADR------IVTIPGQGYRFVGRVA------GPPEPGQEAARA 131 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 P +T L A Q + + Sbjct: 132 PLPDASTGRSIAVLPFGA-APDAAQRHFADGLAEDVIHRLSRSRWISV------------ 178 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKI 243 I N + + S ++ +GV LVA Sbjct: 179 ---------------IARNATQRYGHPLPSNASIARELGVRYLVAG-------------- 209 Query: 244 NYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQ 303 F R L+D T+ + Y + Q Sbjct: 210 --------------QARFHAGRVRVTA------DLIDAPRNETVWTESYERPADDAARAQ 249 Query: 304 NDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLG 363 + + +++ A+ +R + + P G +A + L +A Sbjct: 250 SSISAAIASAVEPVHLRREECLHSAVPPQDGEYWPLLMRARWHFWRSGRDHLRQAEHYAR 309 Query: 364 EIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIK 423 +Q+ P+ + A A V + R ++ A + + + + + Sbjct: 310 RALQARPDDASSLALLAFVHMARVWAGRSACVRVDASEARRLALRAVGSDDTDAFAHFTL 369 Query: 424 AVSALVKGKTDESY--QAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 481 + G + QA+ I + L ++ G EA D A P Sbjct: 370 GTALSFSGHFAVAMSEQALALSICPRFAAATGEL-ARLLAFSGRTDEADDHARQACEASP 428 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ ++ + S ++ ++++L + ++LL FFA + +V ++ +L NVW + Sbjct: 132 EKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQLFRNVWDSN 191 Query: 62 IV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + ++ V I +LRK + + D +P +I TV GYK + Sbjct: 192 YIEDDNTVMVHIRKLRKKI-EADPSNPKFIQTVWGIGYKFVGE 233 >UniRef50_Q48IP6 Transcriptional regulator, LuxR family n=1 Tax=Pseudomonas syringae pv. phaseolicola 1448A RepID=Q48IP6_PSE14 Length = 936 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 56/275 (20%), Positives = 102/275 (37%), Gaps = 9/275 (3%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 Q +R G +++ P + R+ + + L R + LLV FA GE+L + EL+ W +++ Sbjct: 13 QEAIRFGSFVLHPQQQLLFRHSQPVPLGSRAMSLLVAFATRPGELLEKAELLTLAWPKAV 72 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 V + I LR++L++ D+ YI TVP RGY+ PV + P Sbjct: 73 VEECNLRAQIVTLRRALEEQDDF--TYIVTVPGRGYRFSAPVSVQPATAPALPAPAPAPA 130 Query: 123 IPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLD 182 A L + +K + T + VAL SL Sbjct: 131 KDTFAAAPAIKRQVLGRDALVRQLHELTLKRRLLTLTGPGGVGKTT----VALALADSLA 186 Query: 183 TRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDK 242 +S + + L P +V + + + + + SL +V D Sbjct: 187 AHASLSTAFVDLTPVSCAQPVVGRIAFALGLSTENEQPLR---DIPPSLAKRPQLLVLDN 243 Query: 243 INYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 + +DE +S+ + L + + ++ Sbjct: 244 CEHVLDETASAVEALLANAPLCCVVVTSREPLRVQ 278 >UniRef50_C9Y6H6 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6H6_9BURK Length = 526 Score = 148 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 73/509 (14%), Positives = 149/509 (29%), Gaps = 41/509 (8%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 G +++ ++ +G+ + + R D+L H+GE++++ +L D VW +V + Sbjct: 17 FGNFVLQRHERRLLCDGQTVMVGARAFDVLCVLVDHAGELVTKKKLFDLVWPGLVVEENN 76 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 + +S LR+ L + IATVP RGY+ + + E S Sbjct: 77 LQVHVSSLRRILGADA------IATVPGRGYRFTLRLAAVPSA-VETAQASKGKGRASDQ 129 Query: 128 PATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPM 187 A L N PEQ L + +F+ +T+ Sbjct: 130 QAYRRTIAVLPFVNLNADPEQEYFSDGLAEDIISHLTKSPWLLVVSRNSSFAYRNTKESN 189 Query: 188 SKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFS---TFMVHDKIN 244 L R + + V ++ +L G+ + F V +I+ Sbjct: 190 QAVGSALRARYLVLGSVRRAGTMLRMTAELVD-TSTGETLWADRFDRPLSDMFAVQAEIS 248 Query: 245 YNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDN-----------ADGSTMLDKRYV 293 I S V + + ++L + Sbjct: 249 GQIVSAIEPVYLHSEERVASEVPNQNMEHWDLLMRARWHFWRTTPEHVMQAQSLLTRALE 308 Query: 294 ITNGNQLAIQNDLLESLSK-----ALNQPWPQRMQETLQKILPHRGA--LLTNFYQAHDY 346 I G+ ++ ++K A + L + +F Sbjct: 309 IKPGDSASLSLMSFTHMAKLWGAWAEDPRAAVAEANRLALVAVRNDERDAFAHFTLGTAL 368 Query: 347 LLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 406 + A L + P+ A E E+ + + Sbjct: 369 SCA---GQMQAAIAELECALGLYPQAAAAAGELGR----LLVFSGRTEEAEEFI---LQA 418 Query: 407 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW-LNYVLLGKVYEMKGM 465 + P +LS+ + +A+ + G+ ++ + W N++LL G Sbjct: 419 VDASPHDPHLSLWIRSRAIGCFIDGRHADAVRYAREATAKRADWYFNHLLLAACLSAAGD 478 Query: 466 NREAADAYLTAFNLRPGA-NTLYWIENGI 493 A + A + R + + + Sbjct: 479 MEAAQASLQQAMSGRGYNMQAIMFGHPFV 507 >UniRef50_D1TLX7 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TLX7_9BURK Length = 476 Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 53/323 (16%), Positives = 109/323 (33%), Gaps = 27/323 (8%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 +++G + + + R+G+ L L R DLL A +G V+SR EL+ VW ++V + Sbjct: 1 MKIGRIELDMNARCVRRDGQDLRLGSRAFDLLATLASANGRVVSRSELMQTVWPGTVVED 60 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + +IS LRK+L D+ + I TV +RGY+L S Sbjct: 61 CNIDVNISALRKALGDDRD----LIVTVARRGYQL---------------APSRHIQPKL 101 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 A+ P T + + + +G + + Sbjct: 102 RTAASPRPLPRRVGNLVGTDVAVAKAAEALVGSQVLTLTGTGGVGKSSLALELAYRIAPS 161 Query: 186 PMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINY 245 + + I+ V + + + + +L+ ++ D + Sbjct: 162 CPATVAFVDLSSAATIDEVLSAIEYGCGVDMPEDVVC-SERLGAALSNAPWLLILDGAEH 220 Query: 246 NIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQND 305 I + + L A +N + + + I+ T+ + + ++ Sbjct: 221 VISVVAQIVEALLAASLNIQFLVTSREPLKIR------AETVF-RVNPLGVPKLTDRCDE 273 Query: 306 LLESLSKALNQPWPQRMQETLQK 328 +L+S + L Q+M Sbjct: 274 MLDSPAVQLFVRRAQQMHPRFVP 296 >UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA75_KANKD Length = 741 Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 105/272 (38%), Gaps = 5/272 (1%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 +++G WLV P N + + +EP +D+LV+F Q+ +V+SR ELI+ VW +V Sbjct: 3 KTIKMGSWLVFPDRNSLIFQEEEHNIEPLAMDVLVYFTQNPQKVVSRSELIEAVWSGRVV 62 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 +H V + I++LR+ L D YI T+ K+GY+L+ V +E Sbjct: 63 GDHSVYRIINKLRQIL-ARDPSR-EYIKTIRKKGYQLVCDVSVSVSGLLKESFTEEVNDN 120 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDT 183 + S Q+ + K + + W LL + + L Sbjct: 121 EHERLSESGLLSSDKSQHGVMVSKGKLTKRGLWRSSIFWGLILLIVSVVGFLTVKLYFYY 180 Query: 184 RLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKI 243 + L D I + S + + SY GV D + + ++ Sbjct: 181 SMTSYSRSTPLITLDGAIRDPSFSPDGQFIAF--SYRGGVQDDWDIYVESLVDGRLYQIT 238 Query: 244 NYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMS 275 + DE S + V +Y Q+C + Sbjct: 239 DDITDE-LSPSWSPDGRKVAILRYDNQRCMID 269 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLT-LEPRLIDLLVFFAQHSGEVLSRDELIDNVWK 59 + + ++ + + ++ NG + L P+ DLL + Q+ +V SR++L++ VW Sbjct: 126 IDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLLEQVWG 185 Query: 60 RSIVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + V I LRK L D+ ++ TV GYK Sbjct: 186 YQFYGDERTVDVHIKRLRKKLASEDKP---FLYTVWGVGYKFDED 227 >UniRef50_C5SN08 Transcriptional regulator, CadC n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SN08_9CAUL Length = 651 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 62/427 (14%), Positives = 135/427 (31%), Gaps = 37/427 (8%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + +G V P+ +++R + +EP+++ +L H G+V+SRD+L+ W V+ Sbjct: 11 LNIGRLRVKPAACEVTRETKVWVIEPQVMRVLALLGLHHGQVVSRDDLVKACWDGRAVSE 70 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + + +S LR+ +D+ + +I TV K GY+L + E E +++ PP P Sbjct: 71 DAINRVLSRLRQLGRDSGD---FHIRTVRKVGYRLEI----LEPETAPEETITAAPPTPA 123 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 ++ + L A + V F L++ A + RL Sbjct: 124 GHRSSINKLWLLGAGAAAALVLAIMLWWSTTQRPLVQKGFSLAIADIRADGPAALPPERL 183 Query: 186 PMSKSRILLNPRDIDIN-----------MVNKSCNSWSSPYQLSYAIGVGDLVATSLNTF 234 + L R + + +++ + + + + T + + Sbjct: 184 RSQLTHTLSQMRGLKLVAKTKGSEGADYILSGYVSGTQASPNIELTLSETRS-HTQIWSA 242 Query: 235 STFMVHDKINYNIDEPSSSGKTLSIAFVNQRQ--YRAQQCFMSIKLVDNADGSTMLDKRY 292 + ++ + QR R+ +++ + KR Sbjct: 243 RFDQALMSEPTAPERAVAATARYMAVVLGQRVVGPRSTGDPPPVEVATQINE----GKRA 298 Query: 293 VITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDD 352 + + +N A I P L Y+ L+ Sbjct: 299 LSQAHDARHNRNWPRFDQLMA----EVDSHATRALAIEPQSAGALMLKYEVDALPLYPRP 354 Query: 353 KS--------LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 404 RA + V S P+ A + R + + ++ + Sbjct: 355 GENRSEFAERQQRALSFVTRAVTSDPDNPEVLAAAGRDMMERQRWDDSERLLIRSVAIDP 414 Query: 405 DNIVTLP 411 ++ Sbjct: 415 NSRDGNL 421 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + + ++ + ++++L P +LL F A++ G+V SRD L+D +W + Sbjct: 162 IVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDVLLDKLWGYDYYGD 221 Query: 66 -HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V I LR +++ D +P YI TV +GYK P Sbjct: 222 TRTVDVHIRRLRTKIEE-DPSNPKYIITVRGKGYKFRDP 259 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 PV+R + + P + + G +L L P+ LL F +H V R++L+D VW V Sbjct: 159 PVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVWPREQLLDQVWGPDFV 218 Query: 64 TNH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + V I LR+ + + D P YI TV GY+ Sbjct: 219 GDSKTVDVHIRWLREKI-ETDPSHPQYILTVRGFGYRF 255 >UniRef50_Q89ML1 Blr4182 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89ML1_BRAJA Length = 944 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 94/276 (34%), Gaps = 9/276 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 V G + + Q+ ++G ++ + R D+L+ + +GE++S+ +L+ +VW+ Sbjct: 11 SDAEVFFGRFQLDKRRRQLLKDGVEVRIGSRGFDILIALTERAGELVSKRDLLFSVWRDV 70 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 +V V+ ++ LR++L + +D YI TV RGY + P+ PP Sbjct: 71 VVDEAVLRVHVASLRRALGE-GQDGARYIVTVSGRGYSFVAPIERKRGNGLASSGYVPPP 129 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 P+ ++ + + +RF + + + Sbjct: 130 RHGRQFPSIPR---LFVGRDEVVDDLCTLIVKQRFVSVVGAGG--IGKTTVAGAIIRRLQ 184 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHD 241 + L D + ++ P + + + + +V D Sbjct: 185 AEFGDEGAVFVDLGAVDEPGLVAGAVLSAVGCPLGGAEPL---AELLGFVAGKRILIVLD 241 Query: 242 KINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 + +D S L + ++++ Sbjct: 242 SCEHLLDAASHLASQLFQCTSGVCLLVTSREALNVE 277 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 2/134 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V+R G +V + +R+G L L R DLL F + G +R EL+++VW S Sbjct: 181 EAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEHVWGWS 240 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIML-SSP 120 VT I LR+ ++D D +P + TV GY+ + Sbjct: 241 YGDPSTVTVHIRRLREKIED-DPTAPRMLVTVWGVGYRYDPGTPRPDSTPRPDSTPRPDS 299 Query: 121 PPIPEAVPATDSPS 134 P P++ P + Sbjct: 300 TPRPDSTPTGQVAA 313 >UniRef50_Q15YV6 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15YV6_PSEA6 Length = 1124 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 70/471 (14%), Positives = 147/471 (31%), Gaps = 36/471 (7%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSG-----EVLSRDELIDNVW 58 + +G+W VTP N + LEP+ +D+L+ Q LS D++ W Sbjct: 8 NIFYIGDWQVTPQTNSVRAGDAVTQLEPKAMDVLLLLCQQRRDNGHEHALSADDIASQCW 67 Query: 59 KRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLS 118 I ++ V ++I++LRK+ D +P YI T+ KRGY+++ + + E + S Sbjct: 68 GSEI-GDNPVHKAITQLRKAFNDK-PSTPKYIETIRKRGYRIVAKLDFPDEALTNDPQES 125 Query: 119 SPP-PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVA 177 + P + + + + + ++ F L LG Sbjct: 126 TNDWQGGSPFPGLSAFEPDESNVFFGRSAQITALLTRVSKLVSAKHAFCLVLG------- 178 Query: 178 FSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTF 237 S + PR N + + L+ + L ++ + Sbjct: 179 ---PSGSGKSSLINAGVLPRLTHQNGHDGIGVVSYTSVDLAD-VSQSRLFIDLASSLLDW 234 Query: 238 MVHDKINYNIDEPSSSGKTL------------SIAFVNQRQYRAQQCFMSIKLVDNADGS 285 ++D + + L Q+Q A + + +L D Sbjct: 235 DINDIPVFEGLSAETLADMLQEDCPQVAVLCNKALASIQQQTPASR-YAQPQLFLFIDRL 293 Query: 286 TMLDKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHD 345 +L + N ++ L++L+ + + + ++ +L+ Q Sbjct: 294 EVLL-SSPVFNDDERKRFLKCLDTLATSGSILIFSACRNDFYPLVVAHPSLMAGKDQGAH 352 Query: 346 YLLH-GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 404 + L L++ L + S + + + D + + Sbjct: 353 FDLLPPSSSELSQMIRLPAKAANLSWTNEPNSTNPLDEILCHEAVNHPDALPMLQYTLQE 412 Query: 405 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 455 +Y+ GK + Q + S L Y+L Sbjct: 413 LYEQRSANNEMQYSVYRHLGGIEGAIGKK--AEQIYLQLSKDQQSQLEYIL 461 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + G ++ +++ +G + L + DLL+F A+H G+V SR++L+ VW N Sbjct: 131 LSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWGYDYTGN 190 Query: 66 -HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V I LR LK + +I TV GYK V Sbjct: 191 ARTVDTHIKTLRMKLK----QASDFIQTVWGIGYKFEV 224 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + G+ + +++ G++LTL + + +L F ++ V ++ ++ D+VW Sbjct: 132 ENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQIYDSVWGEE 191 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 +++ + VT + LR ++D D ++P I TV GYKL Sbjct: 192 FLSDYNTVTVHMRRLRSKIED-DPNNPKLIETVWGIGYKLTGD 233 >UniRef50_Q12RS3 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12RS3_SHEDO Length = 678 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 66/404 (16%), Positives = 125/404 (30%), Gaps = 56/404 (13%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + + ++ I+RN + L +EP+L LLV+ Q+ +SRDELI+ VW+ V+ Sbjct: 2 IFVFDNIEINTALVTITRNRQALEIEPKLFSLLVYLCQNPNRAISRDELINTVWENRFVS 61 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + ++I +LRK ++D D P YI TV K GY+L V + + + Sbjct: 62 EAAINRAIGQLRKHIED-DTSHPKYIRTVSKVGYRLDAVVQHIPQAQFQWEA-------- 112 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTR 184 + + + + F+ + I + LV F+ Sbjct: 113 -----------------------KKQLSNNKRNISPKAVIFVFFVLISIILVLFTVPQLD 149 Query: 185 LPMSKSRILLN-----PRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMV 239 P + + ++ +I+ + + L +LN+ + Sbjct: 150 TPQLSTSVSIDNISPITTSSNISFNPHFDTANNELLYLFKEHSRSSAQIKALNSQHKTLE 209 Query: 240 HDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQ 299 + NY + S T + R +Q I ++ T Sbjct: 210 LSQDNYYYTDVVSFDDT---RVIASRLTDLKQRDCEIVTINKITHET------QKITDCG 260 Query: 300 LAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRAS 359 +I NDLL M + + A + ++ + Sbjct: 261 KSIINDLLFD--------KVSNMLYYRFRKNVSHPYAIYAISLASFRIHQLSRP-VSTGN 311 Query: 360 ELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 403 L + SP A D + + Sbjct: 312 GLGHTVFTLSP-NKQQLAMIEYQSTAEDELQVFDLQSQQIIQRH 354 >UniRef50_B7VJ79 Transcriptional regulator n=6 Tax=Vibrionaceae RepID=B7VJ79_VIBSL Length = 462 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 72/493 (14%), Positives = 152/493 (30%), Gaps = 64/493 (12%) Query: 10 EWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVVT 69 P NQ+ + ++ LEP LL +F G+V+S ++ +VW+R+ V++++V Sbjct: 14 PISFYPDKNQLVIDSEEIHLEPLQARLLSYFIDKRGQVVSTQQIAADVWQRTQVSDNLVR 73 Query: 70 QSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPA 129 Q IS LR L+D I T+PK+GY + +I S E Sbjct: 74 QVISLLRSQLQDKV-RPYRIIQTIPKQGYLFDIEIIQPSVETTP---------------- 116 Query: 130 TDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFS--SLDTRLPM 187 PPE V + T + + S+G+ S + + Sbjct: 117 ----------VVEIPPPEIKVVSKPKNKTIALITTAVFSIGLIATWAWQIDVSTNDTAVI 166 Query: 188 SKSRILLNPRDIDINMVNKSCN---SWSSPYQLSYAIGVGDLVATSLNTF-----STFMV 239 S + + P I ++ + + S S L Y + ++ + + Sbjct: 167 SAPQSDVIPVYIHDITLDSADDYEMSESVYNYLFYGLNSARNLSGYHFSQLSKQGKQSLA 226 Query: 240 HDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQ----CFMSIKLVDNADGSTMLDKRYVIT 295 ++ + + + RQ Q F D + K + Sbjct: 227 NNGVELKGWLKQKGSNYILSVLIQNRQPNQSQKVEKSFSQDNFFDAIGDVILEIKAIIAP 286 Query: 296 NGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSL 355 ++ + + + S+ + + + Q G D Sbjct: 287 MSSEYGVVSHRVTSIDNYDDWKVISEGISLFYQGKGGQPFA-EIALQLDTIQQQGRDN-- 343 Query: 356 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 415 L+ ++ S Y Q E + AL P + Sbjct: 344 ----YLVNALLSYSESLAYL-------------QSHEQEDREHALQLAKQAFEMNPRCDI 386 Query: 416 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLT 475 ++ ++ L+ ++++ + + S +++ LL ++ + Y Sbjct: 387 ANLT---LGLALLINQHANQAFPYLFYAAESTPSPISFYLLSVADKLSDNPEGSQYNYQR 443 Query: 476 AFNLRPGANTLYW 488 ++ N + Sbjct: 444 YTEVKKEYNGQLF 456 >UniRef50_UPI0001AF360D LuxR family transcriptional regulator n=3 Tax=Pseudomonas syringae group RepID=UPI0001AF360D Length = 939 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 99/281 (35%), Gaps = 29/281 (10%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + G + + P + ++ + + L R + LLV FA GE+L + EL+ W R+ Sbjct: 22 NHEAIHFGSFTLLPREYLLLKDSQPVPLGSRAMALLVAFATRPGELLEKAELLTLAWPRA 81 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 +V + I LR++L D + YI TVP RGY+ + PV I P Sbjct: 82 VVEECNLRAQIVALRRALNDEE----NYIVTVPGRGYRFIAPVSVQ-----PAIRPVPAP 132 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 + +PA + + + + ++R T Sbjct: 133 TSADTLPAVPLVNRKVLGRGELIEQLSTLTLARRLLTL-------------SGPGGVGKT 179 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVAT-------SLNTF 234 L ++ S + + + + ++++A+G+ SL + Sbjct: 180 TVALALADSLAAQSGLSVAFVDLTPVNGTQPILGRIAFALGLSAESEHPLHNMPPSLVSR 239 Query: 235 STFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMS 275 +V D + +DE +++ + L + + Sbjct: 240 PQLLVLDNCEHVLDETAAAVEALLTNAPLCCIVVTSREPLR 280 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + GE + +++R G+ ++L + LL A+++G V S + L D++W + Sbjct: 133 NGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLFDSIWGKD 192 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + V IS LRK + + D P YI TV GYK Sbjct: 193 SFGDIRTVMVHISNLRKKI-EQDPARPEYIITVRGMGYKFNG 233 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + +++ G + + ++ N ++ L P+ +LL A + V ++ L+D +W S Sbjct: 128 ENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKIWDSSF 187 Query: 63 VT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 ++ VT I LR+ + + D +P YI TV GYK Sbjct: 188 YGDDNTVTVHIRRLREKV-ETDPSNPEYIKTVWGMGYKFEYE 228 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 P +R E V P +I+ +G + L DLL + G V SR +L++ VW Sbjct: 129 DDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQLLEQVWGND 188 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVI 105 + VV I LR L D D P IATV GYK + Sbjct: 189 FYGDERVVDVHIRNLRAELGD-DATDPHLIATVRGVGYKFIGRPR 232 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + ++ + E + + +++ +++ L PR D+L A++ G V S +++ + VWK Sbjct: 131 INDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKIYERVWKE 190 Query: 61 SIV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYK 99 +++ V I +LR+ +++N P Y+ TV GYK Sbjct: 191 EFFKSDNTVMVHIRKLREKIEEN-PRKPKYVKTVWGVGYK 229 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 144 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+ V+ + + + +G+ LTL + +LL+ A+ G+V S+++L + VWK+ Sbjct: 140 QEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLYNRVWKQD 199 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + VT I +R+ L D P +I TV GYK + Sbjct: 200 DADDIRTVTVHIKNVRRKLGD-GSKHPRFIDTVWGIGYKFIG 240 >UniRef50_B1T3M3 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T3M3_9BURK Length = 934 Score = 144 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 96/274 (35%), Gaps = 16/274 (5%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + + G + + P ++ R + R D+L GEV+S+ E + VW S+ Sbjct: 6 RTCISFGSFRLYPDERRLERGDEIAEIGNRAFDILSLLVHRPGEVVSQKEFQEKVWPGSV 65 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 V + + I+ LRK L ++ S I ++ RGY + PV + + Sbjct: 66 VGDVNLRVQITALRKLLSEDAASSHG-IRSITGRGYCFVGPVTYTTLNNTAA-------- 116 Query: 123 IPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLD 182 EA+ + +L + TA + +K + S VA AFS + Sbjct: 117 -AEALGDASNDISNLIGRRTAIEDICRLLSTKGLVSIVGPGGIGKSAAALVAARAFSEAN 175 Query: 183 TRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDK 242 + L+ ++ + ++ I D +A L ++ D Sbjct: 176 NVATSTVE---LSSVSHGDHVASTVASALELLVDNHSPI---DAIADYLAKSERLLLLDC 229 Query: 243 INYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSI 276 + ID + +S + + + + + Sbjct: 230 CEHVIDAVAQLALAISRSCEHVTILTTSREPLRV 263 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + +G+ +V P +++ G + L + +LL+ FA+H G SRDEL+D VW Sbjct: 136 DDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDELLDEVWGYQ 195 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 +H V I+ LR + + D P Y+ TV GY+ Sbjct: 196 YSGYSHTVNTHINRLRNKI-EPDPSEPRYVKTVWGVGYRF 234 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + GE + +++ G+ + L P+ +LL F A+H +V +R++L ++W+ V + Sbjct: 138 ISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQLFAHMWRDEYVND 197 Query: 66 -HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 +T I +LR+ + + D P YI TV GYK Sbjct: 198 TSTITVFIRKLREKI-ERDPAKPQYIQTVWGIGYKF 232 >UniRef50_Q2KD09 Probable two-component response regulator protein n=3 Tax=Rhizobium etli RepID=Q2KD09_RHIEC Length = 510 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 72/509 (14%), Positives = 134/509 (26%), Gaps = 82/509 (16%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + G + + + R+ R + + R LL G V+S+ L+D VW Sbjct: 1 MNSQHIAFGHFEFSAENGCLLRDDRPVAIGARGASLLAVLLAAQGGVVSKSALMDAVWPG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 V ++ I+ LRK L D +IATVP+ GY+ V + E + Sbjct: 61 LAVEESNLSVQIAALRKLLG-PASDGSEWIATVPRVGYRFSGRVESACDGTDGEWHAQAG 119 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 + AV L +N E+ + + L + +F Sbjct: 120 SKLGIAV---------LPFENPGGDAEKQYLADGIADNLIIALTRFRWLRVASRGASFKD 170 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATS--LNTFSTFM 238 + + L + + + + L+ A + + L F Sbjct: 171 RNGSRDPRAVGLALGVNFLVDGAIRYTGDRIRISVHLAEATKGATVWSEHYDLQLAEIFA 230 Query: 239 VHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGN 298 V D I I + L + + + Sbjct: 231 VQDAIAERIAAAVEP-ELLLRHGLAVAPHTGNITAWDL---------------------- 267 Query: 299 QLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRA 358 Q + P F +A + + + RA Sbjct: 268 -------------------VRQGTFNFHKVSKPTHLLARRFFREAVELDPMLPEAQIWRA 308 Query: 359 SELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI 418 + L + I Sbjct: 309 R----------------VNAGLIAYGW---TDDPAADGQEGLTAALRAIYLDARN---PY 346 Query: 419 IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAF 477 + A+ + G+ D++ A I+L S L +++LG G A Sbjct: 347 SHYALAIVSAYTGRADQAILAAERSIELGSSFALGHLVLGMARLFSGDAAGARRPLSRGL 406 Query: 478 NLRPGANTLYWIENGIFQTSVPYVVPYLD 506 L P +NG++ + + + + D Sbjct: 407 ELNPHDP-----QNGVWFSLLMLALFFSD 430 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V+ VG+ + + +++RNG+ ++L P+ +LLV+F + G VLSRD ++++VW Sbjct: 138 NRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVLSRDAILNHVWGYD 197 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + +V IS LR+ + + D P I TV GY+ + Sbjct: 198 YASETRIVDIHISHLREKI-EADPKQPRLIRTVRGFGYEFVGD 239 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI-VTNHV 67 LV + Q+ +GR + L R DLL A H G V SRDEL++ VW + Sbjct: 142 NGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGYDFEGGHRT 201 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVI 105 + + +LR+ L + D PVY+ TV GYK P Sbjct: 202 IDVHVRKLREKL-EPDPTRPVYVLTVWGVGYKFAGPPR 238 >UniRef50_Q89XK9 Transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89XK9_BRAJA Length = 970 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 90/277 (32%), Gaps = 14/277 (5%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 G WL+ ++ N + + R ++L +G ++++D+LI +VW Sbjct: 11 DRTYSFGHWLIDCQRRELRYNNVAVPIGSRAFEILEKLVGSAGLLVTKDDLIGSVWSGLT 70 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 V ++ + IS +RK+L ++ + TV RGY L L P Sbjct: 71 VEDNTLQVHISAVRKALGEDR----NLLKTVSGRGYTLAG--------TWRSGHLDHPAA 118 Query: 123 IPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLD 182 P +PA S +L + + L+ G L Sbjct: 119 APVTIPADALFSSNLPSIRAPLIGREDSLSELSDVLSAYRAVTLVGPGGIGKTKLAIELA 178 Query: 183 TRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIG--VGDLVATSLNTFSTFMVH 240 + S + + + + ++ + +L+ +A ++ T +V Sbjct: 179 RSVAPSFNDSVALVELAALQGAALAASATARALRLASNDKEVTPASIAQAIGTRRLLLVL 238 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 D + I+ + + N + + I Sbjct: 239 DNCEHVIEAAAQIASAVLHYCPNVTVLATSREGLRID 275 >UniRef50_C6JFQ6 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFQ6_9FIRM Length = 139 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 2/99 (2%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 Q + + ++ R+ R++ L ++L AQ+ G V S++++ D VWK S Sbjct: 35 QSKIWHKGIAIDLKRREVVRDNRKIELTYTEFEILQLLAQNPGRVFSKEQIYDIVWKESY 94 Query: 63 VTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + ++V IS +R+ ++D D +PVYI TV GYK Sbjct: 95 FGDYNIVMSHISHIREKIED-DPGNPVYIQTVWGVGYKF 132 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 143 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 2/97 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT- 64 +++G+ + + + RNG L P+ DL F Q+ V SR++L++ VW Sbjct: 160 LKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLEKVWGYDYPGW 219 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 V IS LR+ + + D SP ++ TV GYK Sbjct: 220 TRTVDVHISWLRQKI-EADPSSPRHLITVRGTGYKFE 255 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 +Q + + +++ G Q+ L R ++L A + G V SR++++D++W Sbjct: 133 EQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSREQIMDHLWGGE 192 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 I LR+ + + D +P YI TV GY+ Sbjct: 193 FFGEPRSADVHIQHLRQKI-EPDPKNPRYIQTVRGMGYRF 231 >UniRef50_Q05943 Transcriptional regulatory protein glnR n=102 Tax=Bacteria RepID=GLNR_STRCO Length = 267 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 4/139 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV-T 64 +R G+ V + GR L L + +LL + AQH G V +R +L+ VW Sbjct: 127 IRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDYFGG 186 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 V + LR L + I TV GY+ + P E+ ++ + Sbjct: 187 TRTVDVHVRRLRAKLG---PEHESLIGTVRNVGYRFVTPEKPEKGEKSDKSEKAERAEKA 243 Query: 125 EAVPATDSPSHSLNIQNTA 143 E + N A Sbjct: 244 ERAETPGKAAAETNEAAGA 262 >UniRef50_B2G959 Two-component response regulator n=13 Tax=Lactobacillus RepID=B2G959_LACRJ Length = 236 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 2/101 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 PV+ G W + +++N + + L P+ LL + H G+VL+RD+L++ VW Sbjct: 137 NDPVITTGSWEINQETYTVTKNDKTIALTPKEFQLLSYLVDHKGQVLNRDQLVNGVWGYD 196 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 I+ +V IS LR L+D D P ++ TV GYK + Sbjct: 197 ILDTSRIVDIHISHLRDKLED-DSQHPTHLLTVRGFGYKFV 236 >UniRef50_UPI0001C164FC Two component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C164FC Length = 259 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q + + + P +++ N + L L ++L F A H G+ SR +LI +W Sbjct: 153 QSQRLIFKQLAINPEGREVTLNDKPLALTALEFNILHFLACHPGQAWSRPQLIQKIWGCD 212 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V + VV I +LRK + + D +P +I TV GYK P Sbjct: 213 YVGDGRVVDVHIGQLRKKM-EVDSSTPEFIKTVRGYGYKFESP 254 >UniRef50_C6AYW7 Transcriptional regulator, winged helix family n=6 Tax=Rhizobiales RepID=C6AYW7_RHILS Length = 946 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 15/278 (5%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 ++ + G + ++ ++++G + L R +DLLV ++S+ +LI VW Sbjct: 7 VKAEELSFGPFRLSVGQRLLAKDGVPINLGARALDLLVALTLAPNVIVSKQDLISRVWPD 66 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 IV + ++ LRK+L D D YI T+ RGY + P+ S Sbjct: 67 VIVDEGSLRFHMTGLRKALGD-GHDGARYITTIAGRGYCFVAPI-------------SRS 112 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 + + D L + + V + ++ +G ++ Sbjct: 113 GLLRQVSAELDFRYAILPGRPDRMVGREQDVLALTEKLMASRMVTIVGVGGVGKTTVATA 172 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIG-VGDLVATSLNTFSTFMV 239 + L + +L ++ +S LS + V + L ++ Sbjct: 173 VAHHLAPTFKGAVLFADYGMLSDPALVAAGIASMLGLSVSSSDVRPSLIAYLRDKQIMLI 232 Query: 240 HDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 D + ID + + A + + I+ Sbjct: 233 LDTCEHLIDAIADLVAAIVEAAPQVFLLATSREALRIE 270 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + +G V ++ +GR + L P+ +LL+F +H G+VLSR +L+ VW Sbjct: 129 ESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHGVWDYH 188 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + + +V IS LR + + + +P YI TV GYKL P Sbjct: 189 FLGDTRIVDVHISHLRDKI-EQNARTPEYIMTVRNVGYKLHAP 230 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V++ G+ + + +++ L + DLL A + G+V SRD L+ VW + Sbjct: 138 KSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLKAVWGQD 197 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + V + LR+ + +N+ P Y+ T GY V Sbjct: 198 YTGDARTVDVHMRRLREKI-ENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_C5CZM5 Transcriptional regulator, winged helix family n=3 Tax=Variovorax paradoxus S110 RepID=C5CZM5_VARPS Length = 953 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 104/281 (37%), Gaps = 17/281 (6%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + R G ++V + ++ R G+ + L R +LL+ + GEV+ +DEL+ VW Sbjct: 22 SEVRWRFGAFIVWEAQRRLERLGQSVRLGSRSFELLLQLLRRVGEVVGKDELLATVWAGV 81 Query: 62 IVTNHVVTQSISELRKSLKDN--DEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSS 119 +V V IS LRK+L + ++ +I+ +P RGY+ V E+ Sbjct: 82 VVEESSVRVHISALRKALGEPQDGDNCKEWISNIPLRGYRFNGTVFR---EQVGMPTEDR 138 Query: 120 PPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFS 179 P A L ++ + + ++R T + + GI VA Sbjct: 139 PGAAALAFAKLPERLTRLVGRDADMARVLAALATRRLVTI------VGAGGIGKTRVAIH 192 Query: 180 SL---DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFST 236 + R M + I L+P ++ + S +P + L Sbjct: 193 AADCHAERTAMQLAFIDLSPLVSQAHLASTVARSLGAPPDTPDTTR---AILQRLADRDV 249 Query: 237 FMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 ++ D + +D + L A + R + + I+ Sbjct: 250 LLLIDNCEHMLDALAPLIAELLGALPDLRVLATSREAIRIE 290 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 2/101 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 +Q+ V+ + ++ R+ + + L + +LL F A++ +V S+ +L+D VW Sbjct: 130 VQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSKSQLLDAVWGY 189 Query: 61 S-IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + +T I +R+ + + + PVY+ TV GYK Sbjct: 190 DTYGDENTITVYIRRIREKI-EINPSHPVYLQTVWGVGYKF 229 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 5/106 (4%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + GE + + + + G ++L P+ DLLVF A + G LSR++++ VW Sbjct: 198 SDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKVWNYD 257 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIW 106 + V + LR L YIATV GYK Sbjct: 258 YFGEDRTVDTHVKMLRGHLG----KCRGYIATVWGIGYKFDPDAAR 299 >UniRef50_B5ZPU5 Transcriptional regulator domain protein n=11 Tax=Rhizobiales RepID=B5ZPU5_RHILW Length = 502 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 71/465 (15%), Positives = 128/465 (27%), Gaps = 63/465 (13%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 MQ G +++ P+ + RN + + R + LL GE+L + EL+D W Sbjct: 1 MQASRFAFGPFVLDPAAGTLLRNDDPVAVGDRGVKLLAALVGRPGEILGKAELMDAAWPG 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 V +T I++LRK L D +IATVP+ GY+ + + + + L Sbjct: 61 RAVEEGNLTVQIAQLRKLLG-PAADGGEWIATVPRVGYRFTGALNLLGGVKRKALPLPDR 119 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 L N + PEQ + L + AFS Sbjct: 120 -----------LSIAVLPFLNISDDPEQEFFADGLTEDLITDLSRMPGLFVIARNSAFSY 168 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 + M + L R + ++ +L A+ L Sbjct: 169 KGKAVDMREIAGELGVRYLLEGSARRAAGRVRINAKLIDAVS-----GDHLWAERFDRSL 223 Query: 241 DKINYNIDEPSSS-GKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQ 299 D I DE + + L R + S++ D + L Sbjct: 224 DDIFAVQDEVAEKIVEALLGRL---RAPPPRNRPSSLEAYDLCVRARRLMDDSPQAAEEA 280 Query: 300 LAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLH-----GDDKS 354 + + P + + ++ + + Sbjct: 281 HLML--------------------TRAISLDPDYAEAYR-WLAMNHWMGRIHSGGPTEFN 319 Query: 355 LNRASELLGEIVQSSPEFT---YARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 411 N A EL V P + A + K + Sbjct: 320 RNLALELARRAVTLDPNDAGCRWVLAYLFAYERDFAEADAAFAKAIE------------- 366 Query: 412 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLL 456 N + + + ++ G+ E + I L ++ L Sbjct: 367 LDPNEADTFAALSDITVLAGRVGEGLEHIRKAFRLNPFPASWYYL 411 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + ++ G+ V ++ ++ L P+ +LL ++ V +R+E+++ +W S Sbjct: 130 KDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKIWGFS 189 Query: 62 I-VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V + + +RK L + + I TV GYK V Sbjct: 190 FAGGTRTVDEHVKRIRKKL-EPESGFDSLIQTVWGVGYKFEV 230 >UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47YD8_COLP3 Length = 712 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 92/217 (42%), Gaps = 11/217 (5%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + + + R+G + L P++ DLL+FF ++ ++++DEL+D VW ++VT Sbjct: 4 LEFNHITIDTQNQLLIRDGESIILAPKVYDLLIFFCKNPARIITKDELMDEVWTGTLVTE 63 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + +++++ ++RK+L D D SP +I TVP++GY+++ + + E + + Sbjct: 64 NAISRTLVKVRKALGD-DPKSPQFIITVPRKGYRMVTEFNGSDKCQYNEQNTTEQTSTNK 122 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 T + S S K+K+ T + F +L I FS Sbjct: 123 ENNNTITTSFSSVNST----------KNKKPKTLFSLFAISCTLLIVAVSFYFSIQQNIE 172 Query: 186 PMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIG 222 ++ ++ R+I S G Sbjct: 173 IIATKQLKPLTREIADEQHPNVSPDLSQLAYTKVVRG 209 >UniRef50_B7GTW3 Response regulator receiver protein n=6 Tax=Bifidobacteriaceae RepID=B7GTW3_BIFLI Length = 266 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 4/137 (2%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 ++ +R G+ +V + S +GR + L + +LL + QH G V +R +L+ VW Sbjct: 133 VEDGQIRSGDLIVDTNGYTASLHGRPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGY 192 Query: 61 S-IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSS 119 V I LR L + I TV GY+ P ++ +S Sbjct: 193 DYYGGTRTVDVHIRRLRAKLG---GEYEHLIGTVRNVGYRFDPPETDKETAAAQQAAKAS 249 Query: 120 PPPIPEAVPATDSPSHS 136 I D + + Sbjct: 250 SAAIDIDDDTPDLNTAA 266 >UniRef50_Q3KEV6 Putative transcriptional regulator n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KEV6_PSEPF Length = 490 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 95/277 (34%), Gaps = 23/277 (8%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 V+R G + I RQL + R +D+L + +G+V+S+++LI VW S Sbjct: 9 SASVLRFGPYAFHLRQRLILEGDRQLRMGGRALDILQVLVERAGQVVSKEQLIALVWPTS 68 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 +V + I+ LR++L + E+ YI VP+RGY + PV S + Sbjct: 69 VVEEINLRVHIAALRRALGE-GENGQRYIVNVPQRGYSFVAPVQGDSVTQV--------- 118 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSL 181 +P H+L + T V L L Sbjct: 119 ----VFENLQAPQHNLPARLTPV------TGRDSLVGGLVRQLPLSRLLTVTGPAGVGKS 168 Query: 182 DTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHD 241 L ++ + + ++ + L + + DL +L +V D Sbjct: 169 TVALRAAELLLQHFRDGVWQVDLSLIDENIPL---LDHLLKTLDLDFPTLAARHALLVLD 225 Query: 242 KINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKL 278 ++ S +TL A + + + L Sbjct: 226 NCDHLHQACRSLLQTLLDAAPRLSILATSREPLRLAL 262 >UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + V + + P+ ++ NG ++ + + LL++F +H ++LS+ ++ +VW Sbjct: 134 KQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIYKDVWGEFY 193 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYS 108 + V + LR+ L++ D P +I TV +GY I Sbjct: 194 GGDSTVMVHVRRLREKLEE-DPSRPRWIKTVRGQGYIFEAEPIDED 238 >UniRef50_C4IFN3 Transcriptional regulator n=15 Tax=Bacteria RepID=C4IFN3_CLOBU Length = 167 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 2/101 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + V++ E + + +GR + L P+ ++L F AQ+ G V +++++ + VW Sbjct: 64 VSTNVLKFNELEINAKNRTVQESGRAIVLTPKEFEILYFLAQNQGTVFTKEQIYNAVWDE 123 Query: 61 SIV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 ++ + I +LRK + + + D P+YI T+ GYK Sbjct: 124 DYFLSDSNIMAFIRKLRKKI-EPNPDEPIYIITIWGVGYKF 163 >UniRef50_A6LVN5 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=A6LVN5_CLOB8 Length = 228 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV-T 64 +++G + Q+ + L + D+L A + G V S +++ + +W + Sbjct: 134 IKIGSLTINRDTRQVFIANNTVRLTQKEFDILELLASNKGIVFSIEKIYEKIWGDVFFES 193 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 ++ V I ++R+ +++ ++P YI TV GY++ Sbjct: 194 DNTVMVHIRKIREKIEEE-PENPRYIRTVWGVGYRI 228 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ + +G + S Q + + + L P+ +LL + G SRDEL++ +W Sbjct: 132 REESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFSRDELLERIWGYE 191 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + V I LR LKD D I TV GY+ Sbjct: 192 YYGDTRTVDVHIRHLRAKLKD-DPTVSDAIETVRGVGYRF 230 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 7/103 (6%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + VV++G+ + + + ++G++ L + +LL ++ G+V +R E++D VW Sbjct: 125 DRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRVWGMD 184 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + V IS+LR+ + +I TV GYKL++P Sbjct: 185 FFGDFRTVDVHISKLREKIG------SEFIKTVRGVGYKLVIP 221 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + ++++ +++ + + DLL F ++ G SR EL+D VW S Sbjct: 133 SKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTELLDLVWGAS 192 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 H V I+ LR +++N P YI TV GYK Sbjct: 193 YSGYEHTVNSHINRLRMKIEEN-PAKPKYILTVWGVGYKF 231 >UniRef50_D1TNN3 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TNN3_9BURK Length = 489 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/334 (13%), Positives = 97/334 (29%), Gaps = 26/334 (7%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + V+ Q+ R+G+ + R D+L + +G+++++DE++ VW + V Sbjct: 1 MYVFDRVAVSLDGRQVFRDGQAQPIGARAFDILELLIRSAGKLVTKDEIMRLVWPTTFVV 60 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 + + IS LRK D +I TVP RGY+L P S+ Sbjct: 61 ENNIQVHISALRKLFGDG------WIRTVPGRGYQLRTP----SQMTAPHAPSQELAAAK 110 Query: 125 EAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTR 184 S L ++ ++ T + A++ + Sbjct: 111 AVASVVTQRSWPLVGRDDDANTLYEMLQRGSLVTVSGPGGVGKTRLALSVARAWADSNHF 170 Query: 185 LPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKIN 244 + + + V + + A V ++ +V D Sbjct: 171 QVCHVDFAGHSTQHSCLLAVLEKLGGAPGSNAPTIAD-----VVQTVGDRQIVLVFDNCE 225 Query: 245 YNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQN 304 + +S + ++ + + + + M ++ + I+ N Sbjct: 226 RVLQAVASLCECIAASNGHAVVLTTSREPLR----------AMGERVHSISPLTLPEE-N 274 Query: 305 DLLESLSKALNQPWPQRMQETLQKILPHRGALLT 338 + + P L Sbjct: 275 AGEAETLASGAISMFFEHAQASGIRFPADPGTLN 308 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 2/101 (1%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 + G+ + P +++ G+ + L + DLL A + G V SRD L+ VW V Sbjct: 136 TRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSRDYLLHRVWGEDYV 195 Query: 64 T-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + V I LRK L + I T+ GYK P Sbjct: 196 GVDRTVDTHILRLRKKLGGPGSPAER-IVTLWGVGYKYERP 235 >UniRef50_A0NYE8 Putative regulatory protein, possibly two-component response regulator n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NYE8_9RHOB Length = 556 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 73/522 (13%), Positives = 148/522 (28%), Gaps = 38/522 (7%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V + + + ++ R G ++ +EP+++ LL+ ++ ++S+DELI++VW IV+ Sbjct: 29 VYTFDGFELDGARFELRRGGERVAIEPQVLSLLLLLVENRDRLVSKDELIEHVWDGRIVS 88 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIP 124 V I RK++ D + I T+ +G++ + S + S Sbjct: 89 ETAVAARIKAARKAVGDKG-SAQKVIRTIHGKGFRFIAETEVTSAQVTAHPRPSDLITEE 147 Query: 125 EAVPATD----------SPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVA 174 +A PA + L Q P + V L L + Sbjct: 148 QAAPAIENLLKNALDGRPSIAVLPFQYFGEPGQHEIVADALPADIIADLSRLHWLFVIAR 207 Query: 175 LVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTF 234 +F + + L V + S + L G + A Sbjct: 208 GSSFRFRGPDVDPLSAGRQLGVCYGLTGTVECTGGSLTIGVSLIDMTSSGTIWAEHYRAG 267 Query: 235 STFMVHDKINYNIDEPSSSGKTLS--------------IAFVNQRQYRAQQCFMSIKLVD 280 T + + +S + + + D Sbjct: 268 LTELQQLRPEIESHVVASLAVQIPQNEARIARRRAPGELDAWACFHLGLDHMY-RFNRQD 326 Query: 281 NADGSTMLDKRYVITNGNQLAIQNDLLESLSKAL----NQPWPQRMQETLQKILPHRGAL 336 NA + + + A+ A + P + + Sbjct: 327 NARAAALFTQSLERDPYFSSAMGGLSFTHFQSAFMRFSDDPAAEVEEARALAQQAVETDR 386 Query: 337 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQ 396 F + D L A SP F + LV ++ D Sbjct: 387 FDPFAHFNAGRCSWLDGRLEDAIAWFDRATSLSPSFAQGVYTRGLVSVMAGQAAQADVD- 445 Query: 397 LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLL 456 L +D P + +A+ L G ++ + + + + L+ Sbjct: 446 ---LALALDLSPLDPLAYG---MTSARALVQLQLGNISKAQELGVKAAQMIGAHKHISLI 499 Query: 457 GKVYE-MKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTS 497 + + G + EA A P ++ + + F + Sbjct: 500 AALTSHLAGKDAEARQWLARAKQADPAISSEVFFASFPFAEN 541 >UniRef50_C8W6G9 Putative two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W6G9_DESAS Length = 277 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RSIVT 64 + ++ + +++ N + + L R +LL A H ++ +R+ L+ +W+ S Sbjct: 179 IVYPDFEICAVTRKVTVNEKNVRLTSREFELLWLMASHPNQIFTRNNLLTTIWEADSAGD 238 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 ++ VT I LRK + + + + P YI TV GY+ Sbjct: 239 DNTVTVHIRRLRKKI-EVNPNKPRYIKTVWGVGYRFE 274 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 1/101 (0%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + V+ + +++ + +++ L P+ +LL++ A+ +V R++L+ VW Sbjct: 133 RDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQLLKEVWHYEF 192 Query: 63 VTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + V + LR+ L ++ I TV GYK V Sbjct: 193 YGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 233 >UniRef50_UPI0001AEBD7C two component transcriptional regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEBD7C Length = 250 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + +G + + ++ NG+ LTL R LL +F +H +V SR++L+ VW + Sbjct: 137 SEERIEIGPLKIDQRFHSVTLNGQVLTLTAREFALLDYFCRHPNQVFSRNQLLSEVWGYN 196 Query: 62 IVT-NHVVTQSISELRKSLKDND--EDSPVYIATVPKRGYKLMV 102 H V I+ LR L + E+ + TV GYKL V Sbjct: 197 HEGYEHTVNTHINRLRTKLDKINSIENGGQLVETVWGVGYKLNV 240 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + +R G + S + R L PR DLL A H G +R+ L+ VW Sbjct: 127 ESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWHGD 186 Query: 62 IVTNH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 T+ VT I LR+ ++DN P +I TV GYK Sbjct: 187 APTDQSTVTVCIRRLREKIEDN-PAQPRWIKTVWGIGYKFDP 227 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RS 61 + V+ + + P+ +++ L + P LL FF H V SR++L+++VW Sbjct: 129 EEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNV 188 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V + V I LRK+L+ D + TV GY+ Sbjct: 189 YVEDRTVDVHIRRLRKALEPGGHD--RMVQTVRGTGYRF 225 >UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 Tax=Bacteria RepID=Q3DDJ6_STRAG Length = 225 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + +G + P+ + R ++ L + +LLV F ++ V +R EL+D VW Sbjct: 125 SKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKVWGEQ 184 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + V I LR L ++ IATV GY+L Sbjct: 185 FLGETRTVDVHIGTLRTKLGEDG----YLIATVRGVGYRLE 221 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M V+ G + + +S NG +TL + DLL + ++SG VL+R +LID VW Sbjct: 126 MSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGA 185 Query: 61 SIVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V + + + LR + + D +PV++ TV GYKL Sbjct: 186 DYVGDTKTLDVHVKRLRSKI-EADPANPVHLVTVRGLGYKLEG 227 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 6/104 (5%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + P +R G ++ P + G ++L + + LL+ FA+H +V + ++L D +W Sbjct: 126 EGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDRIWNLD 185 Query: 62 ---IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V V IS LR+ + + + P YI TV GY+ + Sbjct: 186 ATGYVE--TVKVHISHLRRKI-ERTPNRPEYIQTVRGFGYRFVP 226 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 ++R + ++ +TL + ++L F Q+ +V ++++L ++W + + Sbjct: 134 QIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQLFKSIWGENYI 193 Query: 64 -TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + V I LR+ + + D +P YI T+ GYKL+ Sbjct: 194 NDENTVMVHIRRLREKI-EKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_Q3Z7C3 Transcriptional regulator, putative n=1 Tax=Dehalococcoides ethenogenes 195 RepID=Q3Z7C3_DEHE1 Length = 238 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 4/103 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + + ++ + + +T ++ R L+L + +LL + A + G V +R+ L++ +W Sbjct: 133 VSRNIIEIDDISITLDSYEVRVKDRLLSLTLKEYELLKYLASNRGRVYTRESLLETIWGF 192 Query: 61 S-IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V I LR + D +E YI TV GY Sbjct: 193 DYYGGTRTVDVHIRRLRSKIGDFNE---KYIKTVRGVGYTFRA 232 >UniRef50_B2J8Q5 Two component transcriptional regulator, winged helix family n=8 Tax=Cyanobacteria RepID=B2J8Q5_NOSP7 Length = 239 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 2/101 (1%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 + + ++ P ++ N + L L ++L F A H + SR +LI +W V Sbjct: 134 QRIIFKQLVINPEGREVILNDKLLGLTALEFNILHFLASHPNQAWSRPQLIQKIWGCDYV 193 Query: 64 TN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + VV I +LRK + + D P +I TV GYK P Sbjct: 194 GDGRVVDVHIGQLRKKM-EVDPSVPEFIKTVRGYGYKFEAP 233 >UniRef50_C2E0K8 Response regulator PhoP n=9 Tax=Lactobacillus RepID=C2E0K8_9LACO Length = 238 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 2/101 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + ++ G + + + +N + L P+ LLV+ AQ+ G V+SR++L+ +W Sbjct: 139 NEEIIETGNIKININKYSVFKNNEPVVLTPKEFQLLVYLAQNKGNVISREQLLQKIWGYD 198 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 ++ + +V IS LR L+D D P +I T GY+ + Sbjct: 199 LLGSSRIVDIHISHLRDKLED-DSSHPQHILTKRGFGYRFI 238 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 138 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 2/101 (1%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 + VG+ ++ P + GR L L R DLL A+H G V +R EL+D VW Sbjct: 130 RLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDLVWGYDFAG 189 Query: 65 N-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 + V + +R+ L++ D P Y+ T GY L Sbjct: 190 DERTVDVHVRRIREKLEE-DPSRPRYLRTKWGVGYYLEAEP 229 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 138 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 2/99 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V+ G + + +S NG +TL + DLL + ++SG VL+R +LID VW V Sbjct: 131 VLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVG 190 Query: 65 N-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + + + LR +++ D +PV++ TV GYKL Sbjct: 191 DTKTLDVHVKRLRSKIEE-DPANPVHLVTVRGLGYKLEG 228 >UniRef50_B4RU42 Transcriptional regulator n=2 Tax=Alteromonas macleodii RepID=B4RU42_ALTMD Length = 1092 Score = 138 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 80/468 (17%), Positives = 153/468 (32%), Gaps = 35/468 (7%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + +G+W V S N +S+ + ++EP+ +D+L+ Q G V+S DE++ W + Sbjct: 2 KQQFYLGQWRVDVSSNTLSQGKTKKSIEPKAMDVLLLLCQQKGLVVSADEIVAQCWPNAP 61 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 + ++ V ++I+ LR++L D +P YI T+ KRGY+++ V + +E+ + + Sbjct: 62 IGDNPVHKAITNLRRALGDK-AAAPSYIETIRKRGYRVVAEVQFIDDEQSKAVEGKWVDT 120 Query: 123 IPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLD 182 P + S + + + SK F F+L LG Sbjct: 121 SP--FVGLSAFSSNESQVFFGRDALVRDLISKAAELFNRQRPFMLVLG----------PS 168 Query: 183 TRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSY--AIGVGDLVATSLNTFSTFMVH 240 S P+ + +N S + L+ + + + Sbjct: 169 GSGKSSLIHAGFLPKLLSKKGINGIYASDHLSFDLADINIDTSAFTIVEEIAIR--MLDW 226 Query: 241 DKINYNIDE---PSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDN--------ADGSTMLD 289 + + S + L + + N D + Sbjct: 227 GNNETGLFDGFSASILAEKLLSSPQQIIDRVKSWLDVYEPNTTNSYSCFVIVIDRLEVFL 286 Query: 290 KRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLH 349 I ++ I N LLE+LS++ + + L+ N + + Sbjct: 287 ADTTIDEKDKRTIFN-LLEALSESNLFLVVLISRNDFYPQISTFDILMKNKGRGAHIDVS 345 Query: 350 GDD-KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 408 L + +L S E A A +D + L L L + + Sbjct: 346 PPSVSELGQVIKLPAIAADLSWEKDE--ATNATLDDIILGDAALAPNCLPLLQYTLQELY 403 Query: 409 TLPELNNL-SIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 455 E L + YQ G ES + L+ +L Sbjct: 404 WQREGKVLKNKTYQALGKIDGAIGFKAEST--FIKMPHAVQNALSSIL 449 >UniRef50_Q3Z7F8 Transcriptional regulator n=5 Tax=Dehalococcoides RepID=Q3Z7F8_DEHE1 Length = 223 Score = 138 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 1 MQQP-VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK 59 M +P ++R G+ ++ +++ +GR L L R +LL F AQ+ G V SR+ L++ VW Sbjct: 121 MSEPGIIRAGDLIIDTLGCEVTLSGRLLDLTFREFELLKFLAQNRGRVFSREALLNKVWG 180 Query: 60 RS-IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + V I+ LR ++D ++ TV GY+ Sbjct: 181 YDYYGGDRTVDVHITRLRGKIEDQTH---TFVETVRNIGYRF 219 >UniRef50_Q24Q12 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24Q12_DESHY Length = 168 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + + + ++ G+++ L + +LL F A H G+V +R +L DN+W Sbjct: 68 DKDRLIFKDLEINNKTFEVIVRGKKVDLTSKEFELLSFMANHPGQVFTRQQLFDNLWGEK 127 Query: 62 IVTNH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + + +T I ++R+ + + D P YI TV GYK Sbjct: 128 YLGDSGTITVFIRKVREKV-ELDPGRPEYILTVWGVGYKFAG 168 >UniRef50_D1CC84 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CC84_THET1 Length = 233 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 2/100 (2%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 Q V R G + S Q++ N ++ L P +L Q++G+V++ L++ VW Sbjct: 130 QSVFRCGPLTINFSRRQVTLNDEEVKLTPTEYSILEQLVQNAGKVMTHQMLLNRVWGPEY 189 Query: 63 VTNH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + + I LR+ L D + P +I T GY+ + Sbjct: 190 TEENEYLRVYIGRLRRKL-DPGPNGPKFIVTEQGVGYRFV 228 >UniRef50_C4L1R5 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L1R5_EXISA Length = 230 Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 + + Q ++ + L P+ D+L +F +H +VL+ +++ + VW + Sbjct: 134 STLVFENVTLDLQTRQCRKDEMLIRLTPKEFDILAYFMRHPNQVLTVEQIYEAVWGEAAF 193 Query: 64 T-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 ++ V I+++R+ L+D P I TV GY+L Sbjct: 194 EVDNTVMVHITKIREKLEDT-PRKPTIIKTVWGVGYRL 230 >UniRef50_A7HMZ4 Two component transcriptional regulator, winged helix family n=7 Tax=Thermotogaceae RepID=A7HMZ4_FERNB Length = 229 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + V+R G+ + PS + +G+++ L + ++L AQ V SR+E+++ +W Sbjct: 123 KEVIRYGKLEIYPSDYVVLYDGQKIDLTAKEFEILKLLAQRPDRVYSREEILETIWTDEY 182 Query: 63 -VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEE 110 V + VV I+ LRK L + +I TV GYK S E Sbjct: 183 DVFDRVVDVHINSLRKKLGKD------WIITVRGVGYKFSKKGDAQSSE 225 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 52/99 (52%), Gaps = 2/99 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ +++ G+ V ++ +NG + L + LL ++ + ++++++D +W + Sbjct: 125 EEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLWPDT 184 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYK 99 + ++V+ + LR+ +++ D SP I TV GYK Sbjct: 185 FPEDPNIVSVLVRRLREKIEE-DPSSPRIIKTVWGVGYK 222 >UniRef50_C9LLD5 DNA-binding response regulator ResD n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLD5_9FIRM Length = 234 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + + +G+ ++ P Q+ N + + L + DLL F A H EV S+++L + +W Sbjct: 131 MPEEGITIGDLIIRPKARQVILNDKNVLLTGKEFDLLYFLATHPNEVFSKEQLFEQIWSL 190 Query: 61 SIVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + VT I+ LR LK + I TV GY+ Sbjct: 191 DPIGEPATVTVHINRLRSKLKKVSGRAYERIETVWGSGYRF 231 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q + +G+ + + +G+ ++L + DLL F Q++ +V SR++L+D +W Sbjct: 130 QSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQIWGAD 189 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + N V I LR L + I TV GYK Sbjct: 190 YIGNLRTVDTHIKTLRLKLGEAGGS----IQTVWGIGYKFE 226 >UniRef50_Q1AYG8 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AYG8_RUBXD Length = 229 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS-IVTNH 66 VG+ + P ++++ GR++ L PR LL A+ G V R L+ VW + Sbjct: 132 VGDLEIDPEQIRVTKGGREVMLSPREFKLLYTLARSPGRVFPRGTLLRQVWGEDEYIDER 191 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V + LR L D D P I TV GY+L+ P Sbjct: 192 TVNVYVQRLRNKLGD-DPSDPKLIETVRGFGYRLVRP 227 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 3/102 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ ++ ++ ++ + N ++++L P+ +L + G V+S +EL VW Sbjct: 131 EEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEELFHEVWGDK 190 Query: 62 IV--TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 +N+ V I LR+ + + P YI TV GYK+ Sbjct: 191 YFTNSNNTVMVHIRHLREKMH-GSAEHPKYIKTVWGVGYKIE 231 >UniRef50_C7N5H9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5H9_SLAHD Length = 234 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 2/99 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V+ +G+ + Q++ R+L L + D+L+ A+ V +R +++D+VW V Sbjct: 137 SVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVVFTRQQILDSVWGYGYV 196 Query: 64 TNH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + VV I +LR+ + + D PV+I T GY+++ Sbjct: 197 GSSGVVAVFIRKLREKI-EADPSRPVHIITEWGVGYRIV 234 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + V+ + ++++ +G +++L P+ +LL F A+ +V R++L+ VW+ Sbjct: 137 KNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREKLLKEVWQYEF 196 Query: 63 VTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + V + LR+ L ++ I TV GYK V Sbjct: 197 FGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 2/100 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS-IV 63 VV G+ ++ ++ G +T LL + A+H G V +RD+L+D VW+ + V Sbjct: 131 VVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLLDAVWRETHYV 190 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 T V + +R+ +++N + P Y+ TV GY+ VP Sbjct: 191 TPRSVDVYVRRIREKIEEN-PEDPRYLKTVRGAGYRFEVP 229 >UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9A4_9FIRM Length = 226 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 2/101 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 ++ ++ + + +S +G ++ L + +L++ ++ G V++R+EL++ VW Sbjct: 126 VEDNILNYKDITIDKENYLVSHDGEEVILTKKEYKILLYMLENKGRVVTREELLNEVWGY 185 Query: 61 SIVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + + LR + D D YI T+ GYKL Sbjct: 186 DFEGESRTLDMHMKTLRNKIGSED-DKYKYIKTIRGIGYKL 225 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + V+ + + S + G+++TL + D+L A H ++ SR +L++ +W+ Sbjct: 130 KDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQIWESHF 189 Query: 63 VTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + VT I LR+ + + D P I TV GYK P Sbjct: 190 EGDEDTVTVHIRRLRRKI-ERDAAKPELIKTVWGVGYKFEAP 230 >UniRef50_B9XFI9 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XFI9_9BACT Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI- 62 V G+ + + +++ + G+++ L + LL FFA G L+RD+++D VW I Sbjct: 128 TVFEFGDCKLDLAAHKLYQGGKEIELTTKEFRLLEFFATRPGRALTRDQILDGVWGNDIV 187 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 V + V + ++ LR + + + PV I T+ GY+ Sbjct: 188 VNDRSVDRCVTTLRAKI-ETNPHQPVLIQTIRDVGYRFE 225 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + VG ++ P + G Q+ L P+ D+L A H +V + + + VW Sbjct: 132 SKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENIFQQVWADD 191 Query: 62 IV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + V I LRK L + D+ I TV GY Sbjct: 192 YFEGGNTVMVHIRTLRKKLGE-DKRKNKLIKTVWGVGYTFNG 232 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V+ + + + P + RNG L L LL A V SR++L++ VW Sbjct: 145 EVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERVWGYDYF 204 Query: 64 TN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 + +V + LR +++ D P + TV GYK+ Sbjct: 205 GDGRIVDVHVRRLRTKIEE-DPAHPRILVTVRGLGYKIQPAP 245 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 V+ VG + + ++ R++ L + DLL ++G LSRD L++ VW Sbjct: 127 SSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERVWGSD 186 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 + + + + LR+ L + D +P I TV GY P E + Sbjct: 187 FLGSNRTIDVHVRWLREKL-EPDPANPTLIRTVRGIGYCFQDPATDPPGRRMLEESEPAS 245 >UniRef50_Q12S47 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12S47_SHEDO Length = 762 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 9/217 (4%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 +G + + S NQI++N + + P+ + +L + A++ G+V+S D L++NVW+ ++V Sbjct: 3 EQYSIGGFFIDLSRNQITQNNQSQIIAPKALAVLTYLAENQGKVVSHDALLENVWQGTVV 62 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPI 123 + + + +SI++LRK+L D D VYI T K+GY L V W+ E + + + Sbjct: 63 SPNTLQRSIAQLRKALGD-DGKVQVYIKTHAKQGYSLECDVRWHDNIESPPLNAAQENIV 121 Query: 124 PEAVPATDSPSHSLNIQNTATPPEQSPVKSKR--------FTTFWVWFFFLLSLGICVAL 175 + + + S K + + L +L + L Sbjct: 122 DTPTMSETNALAMSEDNTQSKAQHHSHDKDQSKSATTTDNAKPSKLTVMPLFTLFGIIIL 181 Query: 176 VAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWS 212 R + + + +S Sbjct: 182 AYIGYQYLMPQPPSKLSFGELRLLTTTDNKEFASIYS 218 >UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax=Stenotrophomonas RepID=B4SI58_STRM5 Length = 774 Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 6/201 (2%) Query: 1 MQQPVVRVGEWLVTPSINQISRNG--RQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVW 58 ++ ++VG+ ++T S ++ G R L L P+ + +L + G V++R+EL VW Sbjct: 9 VEADRIQVGDCVITLSSREVEVEGARRPLRLTPKALGVLRVLMRQPGRVVTREELFAEVW 68 Query: 59 KRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLS 118 ++ TN V+TQ++++LRK ++D++ YI T+ K GY+L+VPV+ + + Sbjct: 69 PDTLPTNDVLTQAVTQLRKVFANDDDNGQAYIETIAKSGYRLLVPVLVLDDVA----PVV 124 Query: 119 SPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAF 178 +PE +PA S P +S + R WV +L+ + +A + Sbjct: 125 EVDAVPEVMPALAGASAIPTATVLPAPSRRSGWRQLRRQLLWVLGVLMLAALVVMATLLL 184 Query: 179 SSLDTRLPMSKSRILLNPRDI 199 + + R I Sbjct: 185 RRGPETSSPVDAAVENGVRVI 205 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 1/103 (0%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 +++ + + +V ++R + L P+ D+LV ++ G V R+E+ VW Sbjct: 139 VKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLVWGE 198 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + + LR+ LKD P I T GY Sbjct: 199 PCYDTRTIDVHVKNLREKLKDIKTKGP-MIETKWGVGYYFRKD 240 >UniRef50_A9CWP6 Putative response regulator n=1 Tax=Shewanella benthica KT99 RepID=A9CWP6_9GAMM Length = 181 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 2/109 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+ + + + ++ L L R DLL+F A+H +V SR +L++ VW S Sbjct: 74 QESRLEFYGITINCTTREVIAFDTSLELTAREFDLLLFMAKHPKQVFSRMQLLEAVWGYS 133 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSE 109 H V I+ LR L + + + TV GYK P + Sbjct: 134 YSGYEHTVNSHINRLRAKLS-HCASTADLVKTVWGVGYKFSPPTQAINH 181 >UniRef50_D0XWC9 Transcriptional regulator, winged helix family n=2 Tax=Caulobacter segnis ATCC 21756 RepID=D0XWC9_9CAUL Length = 955 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 90/281 (32%), Gaps = 28/281 (9%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 G +L+ P + + + R + LL + +GEV+++ EL VW +IV Sbjct: 13 FAFGPFLLLPGRQLLLEGETPVRIGNRALGLLTALVERAGEVVTKRELFAKVWPDTIVEE 72 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + + LR+ L+ E YI+TV RGY + PV S E L P Sbjct: 73 GNLKVHMVALRRVLR--QEAGTRYISTVIGRGYCFVAPVRTLSGREA----LVDRPVEVR 126 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 + + L + + + R + V L Sbjct: 127 RAHNLPAGAARLLGREDVVGAIREELGEARLVS-------------VVGPGGIGKTSVAL 173 Query: 186 PMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDL-------VATSLNTFSTFM 238 +++ + + ++ + ++ AIG+ ++ L + Sbjct: 174 AVAERMTGVVRDGVWFVDLSPIKDPTLVASAVATAIGLAAHSANMLAALSEYLRDREMLL 233 Query: 239 VHDK--INYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 + D + ID + + + R + + + Sbjct: 234 LFDSCECEHIIDTVAMCAERILTDAPGVRILTTSREPLRLA 274 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 2/98 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 + + G+ + + + R G LTL + ++L+F ++ ++ S+ L + VW + + Sbjct: 137 NMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARLYEAVWGETYL 196 Query: 64 T-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 ++++ + LR+ ++DN P Y+ TV GYKL Sbjct: 197 GNDNIMMVHMRHLREKIEDN-PSKPNYLITVRGLGYKL 233 >UniRef50_D2RD26 Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RD26_GARVA Length = 296 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 4/129 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 +R G+ +V +S +G + L + +LL +F QH V +R L+ VW Sbjct: 170 DNGTMRSGDLVVDMRSYTVSLHGHPVDLAYKEFELLKYFVQHPRRVFTRTHLLQEVWGYD 229 Query: 62 -IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 V I LR L + I TV GY+ + E E + Sbjct: 230 YYGGTRTVDVHIRRLRAKLG---VEYEHLIGTVRNVGYRFDPSESDENSEISESSIEDDS 286 Query: 121 PPIPEAVPA 129 + A Sbjct: 287 ENDADKQSA 295 >UniRef50_A5IKU4 Two component transcriptional regulator, winged helix family n=6 Tax=Thermotogaceae RepID=A5IKU4_THEP1 Length = 220 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 56/101 (55%), Gaps = 2/101 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ + G+ + S + G+++ L + ++L+F A+++G+V++R++L++ W Sbjct: 119 KKGLYDFGDLKIDASGFTVFLKGKRIHLPKKEFEILLFLAENAGKVVTREKLLETFW-ED 177 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V+ VV I +RK+++D D + P YI T+ GY Sbjct: 178 PVSPRVVDTVIKRIRKAIED-DPNRPRYIKTIWGVGYMFTG 217 >UniRef50_C7G9Y4 DNA-binding response regulator n=6 Tax=Bacteria RepID=C7G9Y4_9FIRM Length = 167 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + ++ L+ I R +++ L ++L A+HSG V S++++ D VWK Sbjct: 62 LNNHLLNFKGLLIDEVQRVIIRENQEIDLTYTEFEILKLLAKHSGIVFSKEQIYDIVWKE 121 Query: 61 SIVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 S + ++V I +R+ ++DN P+YI TV GY+ Sbjct: 122 SYSGDYNIVMSHIRNIREKIEDN-PSKPIYIQTVWGVGYRF 161 >UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax=Shewanella amazonensis SB2B RepID=A1S359_SHEAM Length = 729 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 7/218 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 R+G ++V P I++NG LE R++ +LV + +G +SRDELI VW+ Sbjct: 3 NNKKYRLGPYMVIPERCVIAKNGSDTKLELRVMQVLVCLLERAGRPVSRDELIREVWRGG 62 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V+++ + + I++LR +L D D S I TVPK GY L+ V + L+ Sbjct: 63 QVSDNAINRIIAQLRSALGD-DARSQQVIQTVPKVGYLLIAEVEPLEGQVITPSDLTHSS 121 Query: 122 PIPEAVPATDSPSHSLNIQNTA--TPPEQSPVKSKRFTTFWVWFFFLLS----LGICVAL 175 +P A N Q ++ P+ PV ++ +L+ +G+ ++L Sbjct: 122 EVPNAAAPVAPIDIEDNQQRSSSTMSPDIKPVPAQPKPAQLKPGRLILATYALVGVLLSL 181 Query: 176 VAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSS 213 +AF DT KS+ +I + S Sbjct: 182 LAFIVWDTLTQSDKSKAEPVQDNIASLLPLTSLEGQEV 219 >UniRef50_C6PZ92 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ92_9CLOT Length = 235 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 2/101 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + + + +V + I + + + + P ++L F + +V ++ ++ D++W + Sbjct: 134 MHESAINYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVFTKSQIYDSIWGQ 193 Query: 61 SIV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + ++ V I LR + ++D DSP YI+TV GYKL Sbjct: 194 DALRNDNTVMVHIKRLRDKI-EHDADSPEYISTVWGVGYKL 233 >UniRef50_Q89XL3 Transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89XL3_BRAJA Length = 965 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 96/277 (34%), Gaps = 15/277 (5%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+PV +W + ++ G + L R ++L Q G+++++++L + VW+ Sbjct: 22 QRPVYIYAQWEIDLVRRELRSAGELVPLGGRAFEILAELVQAEGQLVTKNDLTERVWRGV 81 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 V + I+ +RK+L + + ++T RGY+L+ + L S Sbjct: 82 FVEESALRVHIAAIRKALGPDRD----MLSTTVGRGYRLLGAWRIRHMDA----PLQSAA 133 Query: 122 PIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTF-WVWFFFLLSLGICVALVAFSS 180 S S L + A + + R + +L + A + Sbjct: 134 TGLLPSTNIPSASFDLIGRTAAIAHLWRLLSAYRVVSLVGPGGIGKTALALEAARTPPTG 193 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 L + + L +P+ + + +L + +A ++ ++ Sbjct: 194 LAADRLLVELASLSDPKLVCSVIAGVLG------TKLEGEEISPESIARAIGPRPLLLIL 247 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 D + ID + + + + + I+ Sbjct: 248 DNCEHVIDAVAQVAELVVSRCPGTFIVATSREALRIE 284 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 4/101 (3%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + ++ G + + +++ +G+ + L P+ +LL F +H V S D+L+D +W Sbjct: 129 ETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDKLWDG-- 186 Query: 63 VTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V + H V +S LR+ + + + + P YI V GY+ Sbjct: 187 VGDKHTVRVHLSRLREKI-EANPNDPQYIVNVWGIGYRFEG 226 >UniRef50_D2Q6K7 Response regulator-like transcriptional regulatory protein n=7 Tax=Bifidobacterium RepID=D2Q6K7_9BIFI Length = 253 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 4/109 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + ++R G+ +V + S + L + +LL + QH G V +R +L+ VW Sbjct: 133 EDGLIRSGDLVVDTNGYTASLRSHPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYD 192 Query: 62 -IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSE 109 V I LR L + I TV GY+ P E Sbjct: 193 YYGGTRTVDVHIRRLRAKLG---GEYEHVIGTVRNVGYRFDPPEEEEGE 238 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ ++ G + ++ G ++L+ + LL + A+ V++ ++ ++VW + Sbjct: 132 KETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIAQIYESVWGKE 191 Query: 62 IV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + ++ V IS LR +++ D +P + TV GY+L+ Sbjct: 192 FIHDDNTVMVHISRLRNKIEE-DPANPQRLQTVRGLGYRLVC 232 >UniRef50_A9AVR8 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A9AVR8_HERA2 Length = 248 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 P+VR+G+ + +++ G + L P +LL F A +SG+V R+ L VW V Sbjct: 146 PIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDREVLFREVWGYEYV 205 Query: 64 T-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 ++V + LR+ +++ P I TV GYKL Sbjct: 206 GQTNLVDVCVRRLREKIEEQ-PSKPRRILTVRGVGYKL 242 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR-S 61 ++ G + S ++ ++ L P D+L A + G V S D++ VW + Sbjct: 158 DEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVFSTDDIFTRVWNEKA 217 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 N+ V I LR+ + + D + I TV GYK+ Sbjct: 218 FEGNNTVMVHIRRLREKI-EMDARNAKIIKTVWGVGYKIE 256 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + V+ + + Q+ N +++ L + DLL+ AQ+ V +DEL +++W Sbjct: 130 LNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKDELFESIWGL 189 Query: 61 SIVTNH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + + VT I +R+ + + + P YI TV GY++ V Sbjct: 190 DSIGDSATVTVHIRRIREKI-EFNPSKPQYIETVWGVGYRIRV 231 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + +GE+ + S + I R G +L L R DLL F +H G+ SR++L+ +VW Sbjct: 164 EATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVWGWEF 223 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 VT ++ LR+ + + D P +ATV GY+L Sbjct: 224 GDLSTVTVTVRRLREKI-ETDPTHPTILATVWGVGYRL 260 >UniRef50_D1BL25 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BL25_VEIPT Length = 229 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK- 59 M+ ++ GE + P + ++ N +++ L+ + LL F ++ V S++EL VW Sbjct: 129 METNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELYSRVWGL 188 Query: 60 RSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 S V I+ LR+ ++DN +I TV GYK + Sbjct: 189 DSYGDYATVAVHINRLREEIEDN-PSDSKHIITVWGVGYKFV 229 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 ++ G +++ +++++G +L+L P+ + A G VLS+++L++ W + V Sbjct: 132 DILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQLVEAAWGKEFV 191 Query: 64 TN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 +T I +LR+ ++D D P I TV GY+ Sbjct: 192 GETSSITVFIKKLREKVED-DPSDPRVIQTVWGIGYRFEPE 231 >UniRef50_Q067N9 Two component transcriptional regulator, winged helix family protein n=1 Tax=Synechococcus sp. BL107 RepID=Q067N9_9SYNE Length = 234 Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 10 EWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH-VV 68 + + P + +R G+ L L P+ LL F Q+ V SRD+LID +W + + V Sbjct: 143 DLELIPEECRATRGGKDLKLSPKEYKLLELFIQNPKRVWSRDDLIDQIWGVDYIGDRKTV 202 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 I LR+ + + + P ++TV GY+ Sbjct: 203 DVHIRWLREKI-EANPSDPTKLSTVRGFGYRF 233 >UniRef50_C7TA80 Two-component response regulator n=2 Tax=Lactobacillus rhamnosus GG RepID=C7TA80_LACRG Length = 218 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 4/104 (3%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 Q V + + + +N R+L L + LL H G V S+ + + VW S Sbjct: 118 QSQVTFADLRLDNLNQTVYKNDRRLNLTVKEYRLLKLLMIHPGHVFSKQAIYEKVWGESY 177 Query: 63 VTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVI 105 + + + V I LR ++D + YI TV GY L V Sbjct: 178 IGDENTVNVCIKRLRDKIQDV---NQRYIRTVWGIGYVLEAGVE 218 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + + + ++ P I + G + L R +L + ++H G+V++R+ L+ VW + Sbjct: 135 ITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGD 194 Query: 66 -HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V +I LR+ ++D D P YI T GY L Sbjct: 195 VRTVDVTIRRLREKIED-DPSHPEYIVTRRGVGYFL 229 >UniRef50_Q1ITK1 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITK1_ACIBL Length = 724 Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 92/194 (47%), Gaps = 7/194 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR- 60 +Q +VR G + ++ + G +L ++ R ++L + GE+++R++L +W Sbjct: 7 RQQLVRFGPYCANRQTGELYKFGTRLKIQDRPFEILSILLESPGELVTREDLRTRLWPDG 66 Query: 61 SIVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSS 119 + V ++ ++ ++ +LR L D+ D+P YI TV RGY+ + V + E L++ Sbjct: 67 TFVDFDNNISTAVHKLRSVLSDS-ADAPRYIETVGGRGYRFIGTVESDVPADSE---LAA 122 Query: 120 PPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFS 179 P P TDS S + P + + T W+ + +L + + L+A + Sbjct: 123 SVQAPANKPETDSTSARVVSVIVKKPVALTTAPASVETRSRRWWLLIPAL-VLLGLIAAA 181 Query: 180 SLDTRLPMSKSRIL 193 + P ++ R++ Sbjct: 182 AWIYFTPPAEPRVV 195 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+ V+ GE + S +++ G+++ L LL +++ G V SR EL++ V Sbjct: 133 QREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKVLGYD 192 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSE 109 + + LR + DN +P ++ TV GY+ P + Sbjct: 193 FEGYERTIDSHVKNLRAKIGDN-PRNPKWLHTVHGVGYRFEDPTKQPQQ 240 >UniRef50_B4WMF1 Response regulator receiver domain protein n=2 Tax=Cyanobacteria RepID=B4WMF1_9SYNE Length = 871 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 85/279 (30%), Gaps = 20/279 (7%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RSI 62 PV++ G+ + P ++++ + L P+ LL F ++ + S D L+D VW Sbjct: 120 PVLQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDT 179 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPP 122 T V I LR+ L+ I+TV GY+L + + +S Sbjct: 180 PTVASVRTHIKGLRQKLRQVGLS--DVISTVYGLGYRLRTAAPPKATTPRTKATYASTSR 237 Query: 123 IPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLD 182 A P + + ++ NT + + + L SL V+ + Sbjct: 238 TAAARPNSGANQAAIEQVNTRPIGIEQTDTNPIDKSNRPQQLDLASLWQGVSDSYLQRIT 297 Query: 183 TRLPMSKSRILLNPRDIDINMVNKSCNSW-----------------SSPYQLSYAIGVGD 225 + + P + ++ L + Sbjct: 298 KVSDVFRRLQPGQPDLTVRQQLLSEAHALAGSLGSFGFKDVAIQWREIESTLRTHDDLSA 357 Query: 226 LVATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQ 264 + L + + S + LSI + + Sbjct: 358 ELLRQLEERIALISQSLRQASRQPRSPTSSHLSIPVITE 396 >UniRef50_A9KM61 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KM61_CLOPH Length = 224 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 1/96 (1%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 ++ G V ++ ++ L+ + L ++ QH V+++DEL NVW + ++ Sbjct: 129 MQSGRIRVDVKARKVYVEDMEIELKNKEFKLFLYLFQHPNIVITKDELFANVWGDAFFSD 188 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + I +LR+ + + D ++P I T+ GY++ Sbjct: 189 GTLNVHIRKLREKI-EKDPNNPEIIKTIWGTGYRME 223 >UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VGJ6_SPHWW Length = 382 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 14/201 (6%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M G++++ P ++ R+G + L R +D L +++G ++ +D + VWK Sbjct: 1 MPPRGYHFGQFVLDPEDRRLLRDGVPVELNARYLDALALLVRNAGSLVGKDRFLSEVWKD 60 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 VT+ +TQ I LR+ L D D P +I TVPK GY+ + V W E Sbjct: 61 VPVTDEALTQCIRLLRQRLGD-DASRPHFIETVPKHGYRFIAEVDWRESSAPAEDAAPHT 119 Query: 121 PPIPEAVPATDSPSHSLNIQNTATP-------------PEQSPVKSKRFTTFWVWFFFLL 167 P A A + P+ S V+ L Sbjct: 120 LPPSAAPSALRRVAMMAGAGTLGAGGAGLIGGLAYGFIAATPPLPSGGGAASSVFVLLWL 179 Query: 168 SLGICVALVAFSSLDTRLPMS 188 +L + + A SL + + Sbjct: 180 TLAVALVGGAGVSLGIAIAEA 200 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 7/99 (7%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT- 64 ++ G + + + NG+ + L DLL++ A++ V+S++E++D VW Sbjct: 131 IKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWGIDYYGS 190 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 ++ V ++ +RK L SP I T+ GYKL+ Sbjct: 191 DNTVEVYVNYIRKKL------SPELIKTIRGVGYKLVGE 223 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 3/101 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 + G + ++ ++ L P+ D+L A H +V S + + VW + Sbjct: 139 SAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEHIFQQVWGEAYY 198 Query: 64 TN--HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + + V I LRK L + D+ +I TV GY Sbjct: 199 ESGGNTVMVHIRTLRKKLGE-DKQHQQWIKTVWGVGYAFQG 238 >UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostridium RepID=A7GIT8_CLOBL Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 2/103 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + +++V + + + + + ++TL P+ ++L A++ G V EL + VW + Sbjct: 128 NEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSELYERVWGQE 187 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + ++ + I LR+ L D ++S YI TV GYK+ Sbjct: 188 FLENDNSLLTHIRNLREKLNDTVKNS-KYIKTVWGVGYKIEKE 229 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V + G + P + ++L L P+ +LL +SG+VL+R++L++ +W Sbjct: 144 SEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIMVTNSGQVLTREKLLEKIWGYD 203 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + + V I LR+ + + P + TV GY+L Sbjct: 204 FLGDTRTVDVHIRHLRQKISEAGG-PPDLVETVRGIGYRL 242 >UniRef50_D1YA87 Transcriptional regulatory protein, C-terminal domain protein n=2 Tax=Propionibacterium acnes RepID=D1YA87_PROAC Length = 237 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 4/99 (4%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS-IVT 64 + G + V S + L L +LL + H G VL+RD L+ +VW Sbjct: 141 LVAGPFTVDEDGYTASVGDKDLDLTYTEFELLKYLVGHPGRVLTRDLLLSDVWGYDYYGG 200 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V I LR + + +I TV GY+ Sbjct: 201 TRTVDVHIRRLRAKVG---PEYEGHIQTVRSVGYRFQAE 236 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 3/103 (2%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + + +V + + +I N ++ + P+ +L A + G VLSR+E++D VW Sbjct: 131 LNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEILDKVWGY 190 Query: 61 SIVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + VV I +RK + + E I TV GYK V Sbjct: 191 DYFGDTRVVDTQIKRIRKKIPEEGEKWS--IKTVYGIGYKFEV 231 >UniRef50_C6IXU0 Transcriptional regulator domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXU0_9BACL Length = 265 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI-VTNH 66 + + + R G ++ L +LL+ +H G VLSR+EL+ VW + ++ Sbjct: 171 FKDLWIDRKKMTVYRGGIKIELTKTEFELLIKLLEHEGTVLSREELLSEVWGTTFLGGSN 230 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 VV I LRK L DN P YI TV GY+L Sbjct: 231 VVDVHIKSLRKKLGDN-ASRPTYITTVRGVGYRL 263 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 3/101 (2%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS- 61 + V+ G+ + +++ R R++ L P LL + QH G V SR++L+D VW Sbjct: 129 EDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWGSDV 188 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V V + LRK+L + +E P I TV GY V Sbjct: 189 YVEARTVDVHVGRLRKALNNKEERDP--IRTVRSAGYAFDV 227 >UniRef50_D0WLW8 DNA-binding response regulator RegX3 n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WLW8_9ACTO Length = 262 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V G V +++S +G ++ L DLL + + G V+ + EL++ VW + Sbjct: 131 EAGVYDDGWLAVDLESSRVSVDGAEIPLAAMEFDLLAYLVANRGRVVEKRELLNKVWGGA 190 Query: 62 IVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPP 121 + + + + LR+ + + D D+PVYI TV RGY+ E +P Sbjct: 191 VTGDGTLAVHVRRLRRRI-EPDPDNPVYICTVWGRGYRFREGGASLKAGETPTRAGEAPA 249 Query: 122 PIPEA 126 E Sbjct: 250 RAGER 254 >UniRef50_C4W819 Two component transcriptional regulator, winged helix family n=3 Tax=Staphylococcus RepID=C4W819_STAWA Length = 225 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS-IVT 64 ++G V + N + ++L R +DLL FF + ++LS++++ VW V Sbjct: 125 YQLGNLKVNFKSGDVFVNHKPVSLTARELDLLYFFISNKNQILSKEQIYSKVWGYETFVD 184 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 ++ + I LR+ +++N + P +I T+ +GY Sbjct: 185 DNTLMVHIRTLRRKIEEN-PNQPKFIKTMRGKGYIFKGE 222 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + +++VG+ ++ + ++ G + L P LL F H G+V SR +LI+ V + Sbjct: 128 ERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIEKVQDYAF 187 Query: 63 VT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V I LRK L + D P YI T+ GYKL+ Sbjct: 188 EGYERTVDSHIKNLRKKLGAS-PDEPHYIKTIYGVGYKLVGE 228 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 P ++ + + +N ++ L P LL + +++ +VLSRD++++ VW Sbjct: 131 DPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILEKVWGYEY 190 Query: 63 VT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 +V IS LR L +ND P I T+ GY+ + Sbjct: 191 GGQTRIVDIHISHLRDKL-ENDPKHPQLIKTIRGFGYEFV 229 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 G + + N++ +N +++ L P LL F ++ G+ L R+E+++ +W + Sbjct: 134 YTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIWGEDYFGD 193 Query: 66 -HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWY 107 + I LR+ ++DN P YI T+ GY+ ++ Sbjct: 194 TKTLDVHIRRLREKIEDN-PSDPRYIKTIWGSGYRWQPEMVRR 235 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 2/101 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ ++ + ++ G + L + D+L + H G+V S++++ + VW Sbjct: 129 KRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQIYEKVWGFD 188 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + VT+ I +R +++ D D+ YI TV GYK Sbjct: 189 AEGDTTTVTEHIKNIRAKIENLDPDT-EYIKTVWGIGYKWE 228 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 4/103 (3%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M++ V+ G + S ++ +G + L P+ +LL FA+H V + D+L+ W Sbjct: 128 MEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQLLAKFWDG 187 Query: 61 SIVTNH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V + + +S LR+ + + D + P ++ V GY+ Sbjct: 188 --VGDRHTIRVHLSRLREKI-EADPNQPQFLVNVWGVGYRFEG 227 >UniRef50_D1CH01 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CH01_THET1 Length = 238 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 2/101 (1%) Query: 10 EWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNH-VV 68 + L+ P Q+ G+ L L LL +H+G+VL D +++ VW + V +H ++ Sbjct: 136 DLLLDPCSRQVYLRGKPLHLTSTEYRLLELLVRHAGQVLPHDLIMERVWGPTYVGDHQLL 195 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSE 109 I LR L D D + P YI T GY+ + S Sbjct: 196 KVFIRRLRHKLGD-DPEQPRYIQTEWGMGYRFVGQSAERSP 235 >UniRef50_B0N9X7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0N9X7_EUBSP Length = 152 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 +Q +R+GE + +++ + +++ L +L A H G +LS++++ + VW Sbjct: 48 EQEPMRIGELYIQSEQHKVLKRDQEVRLTNIEFRILYVLALHQGSILSKEQIYNFVWNGE 107 Query: 62 IV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + + +T I LRK ++D D P YI TV GY++ Sbjct: 108 YLWDDSNITSHIRRLRKKIED-DPSRPEYIQTVRGVGYRM 146 >UniRef50_B1T3K6 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T3K6_9BURK Length = 465 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 63/407 (15%), Positives = 131/407 (32%), Gaps = 21/407 (5%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + G+ +V+ ++ G+++ + R DLL+ + G +S++ +++ VW+ Sbjct: 4 LPDSQYEFGKTVVSAHRRELVHGGKKVEIGNRAFDLLLLLLEERGVAVSKNRIMEAVWRG 63 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSP 120 IV + + IS LR++L ++ + I TV RGY+ + + S+ S+ Sbjct: 64 RIVGENALEAQISSLRRALSEDRKA----ILTVAGRGYQFVGQLREQSDPTPRPTFTSTS 119 Query: 121 PPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSS 180 P P + + +++ R T + + G+ +A + Sbjct: 120 PYRGSRKPHIPKYTSRWFGREIDKNDIAGRLETSRMVT------LVGAGGVGKTRLAVEA 173 Query: 181 LDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVH 240 +L + + I ++ + +S G L + ++ Sbjct: 174 -AGQLAHRFPDGVCIVQVGSITTPDELPSLVASALIPYVPDGATQLQFQCIEGKHILILL 232 Query: 241 DKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVD-NADGSTMLDKRYVITNGNQ 299 D + + S L A + + ++ L I N Q Sbjct: 233 DNCEHLLGPVSEFSVKLLEATSTVHLLATSREALRVRNEAVFPVSPLELPPAEEIDNVEQ 292 Query: 300 LAIQNDLLESLSKALNQP-----WPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKS 354 LL+ + + +P L A + Sbjct: 293 YPSVALLLDRVGDGFSTSDRGAMMAAARICNALDGVPLAIELSAECVPALGFDGVAT--Q 350 Query: 355 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALN 401 LN ELL +++SP +A VD + L AL+ Sbjct: 351 LNNRFELLIHGLRTSPLRHKTL--RASVDWSYEPLSQSCKTVLNALS 395 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 3/101 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI- 62 +++VG+ +V S ++ R+G + L R +LL + + G VL+R +++++VW Sbjct: 141 SMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWGYDFD 200 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 + +VV + LRK + + I TV GY++ Sbjct: 201 PSTNVVDVCVQRLRKKV--DAGHDVHLIETVRGAGYRMRKE 239 >UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIZ5_ACIBL Length = 717 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 96/185 (51%), Gaps = 18/185 (9%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + +W V P INQ+ R LEP+++ +LV A HS EVLS++ LI VW + V++ Sbjct: 5 FHIADWEVEPQINQVRRQNHSFHLEPKVMQVLVELAAHSDEVLSKEHLIHAVWSDTFVSD 64 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 V+T+ ISE+R+ L D+D +P I T+PK GY+L+ PV++ P Sbjct: 65 DVLTRCISEIRRVL-DDDARAPKIIQTIPKSGYRLIAPVVFDK-------------AAPP 110 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 +++ + ++ TPP ++ ++ W+ +L++ + V F+ TR Sbjct: 111 KNGSSNGSTATVEAATVETPPLKTAETPRKNLAPWIVAVGVLAIAV----VYFAIRATRP 166 Query: 186 PMSKS 190 P+++ Sbjct: 167 PVAQP 171 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++P + + + P +++ ++ L L P+ +LL++ +H L+R+ L++ +W Sbjct: 140 REPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRERLLERIWGYD 199 Query: 62 IV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 +V I +LR+ ++DN +P YI T+ GYK Sbjct: 200 FGQETRLVDVHIGKLREKIEDN-PKAPQYIQTIRGYGYKF 238 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 2/100 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 +++ G + + ++++N + L P+ + L+ +F QH V+S++ L VW Sbjct: 166 TIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETLYQAVWGEDFF 225 Query: 64 T-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 ++ V I LR+ + +N P ++ TV GYK +V Sbjct: 226 GSDNTVMVHIRRLREKI-ENTPSKPDFLVTVKGLGYKFVV 264 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 55/101 (54%), Gaps = 2/101 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++++G+ ++ ++ +NG+Q + +L +H+G V ++ + ++VW + Sbjct: 139 NHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKASIYEHVWGQE 198 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + + +++ IS+LR+ ++DN PVY+ T+ GY+ Sbjct: 199 YIGDENLIMVYISKLREKIEDN-PRKPVYLITIRGLGYRFE 238 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 2/109 (1%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 ++ + GE + +G+ L L P DLL+ A+ VLSRD+L+D V R Sbjct: 140 VKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRDQLLDAVAGR 199 Query: 61 SI-VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYS 108 S V + V IS LR+ L + D +P +I TV GY P + Sbjct: 200 SYDVFDRSVDVHISSLRRKLGE-DPRNPRFIQTVRTVGYMFNDPDAPHP 247 >UniRef50_UPI00017F4CF5 two-component response regulator n=2 Tax=Clostridium difficile RepID=UPI00017F4CF5 Length = 124 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ ++ G +++ S ++ ++G+ + L + + +L FA + +++S+++L D VW Sbjct: 21 EEKIISFGPYILNESRAELIKDGKSIGLSAKELKILSLFAHNQNQIISKEKLWDKVWGED 80 Query: 62 IVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V ++ + I ++R+ L+DN P YI T+ GYKL V Sbjct: 81 YVGFDNTIMVHIRKIREKLEDN-PSKPEYILTIKGLGYKLAV 121 >UniRef50_B0MRC9 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRC9_9FIRM Length = 222 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-RSIVTNHV 67 G+ V + RN + + + +LLV ++ G +L+++ L + +W S Sbjct: 128 GDIRVNKVSRTVCRNDIPIEMTVKEFELLVLLIENKGRILTKEYLFNQIWGSDSFSEQQT 187 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 +T I LR+ ++D D +P +I TV GYK Sbjct: 188 LTVHIKRLRQKIED-DPKNPKHIQTVWGVGYKYE 220 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 2/97 (2%) Query: 5 VVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT 64 V+R + P ++ + R+LTL P+ LL F +H V SRD+L++ +W + Sbjct: 161 VLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVWSRDQLLEKIWGIDFMG 220 Query: 65 NH-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + + I LR+ + + + +P Y+ TV GY+L Sbjct: 221 DSKTIDVHIRWLREKI-EANPSNPSYLLTVRGFGYRL 256 >UniRef50_C3IWQ5 Two-component response regulator n=2 Tax=Bacillus thuringiensis RepID=C3IWQ5_BACTU Length = 214 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 49/100 (49%), Gaps = 2/100 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ + +G+ ++ + ++ +TL +L F G + ++ ++ ++VW Sbjct: 107 KEKQIHMGDLVLDHHSCTLYKSSETITLSATEYKILTLFMGDPGRIFTKKQIFESVWSDY 166 Query: 62 I-VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 ++ + IS LR+ L+D+ +PVYI T+ GY+ Sbjct: 167 YCADDNTIMVHISRLREKLEDS-PKNPVYIKTIRGLGYRF 205 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 4/101 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + V+ VG+ + P ++ NG + L P+ ++L++ Q G V++RD+L++ VW Sbjct: 132 SEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDLMNVVWGFD 191 Query: 62 IV-TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + V +S LRK L+ I ++ GYKL+ Sbjct: 192 YIGGQRTVDVHVSSLRKKLELGQSVQ---IESIRGVGYKLV 229 >UniRef50_C5AMC0 Transcriptional regulator, winged helix family protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5AMC0_BURGB Length = 956 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 87/270 (32%), Gaps = 23/270 (8%) Query: 8 VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHV 67 +G + + ++ NG + L R +L A G ++++D L+D +W + V + Sbjct: 14 LGRFEIDLVGRELRENGSAVRLGARAFAILEMLAAADGRLVTKDALLDAIWPDTFVEENT 73 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAV 127 + +S LR++L D I TVP RGY+L+ + PP + Sbjct: 74 LQVHLSALRRALGD----QRDCIMTVPGRGYRLV------------RRAAAEPPRGAQPA 117 Query: 128 PATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPM 187 + + V+ T + +G +A +S Sbjct: 118 ARLPRHPDVIGRTHAVAA-----VREALGQTRVLTLTGAGGIGKTTLSMAVASAIEAGVP 172 Query: 188 SKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNI 247 ++ + + + A G L A + ++ D + I Sbjct: 173 GSVHLIELASMQGAAEIVAAVEAGVGLRLPHPASAGGPLPAPAGTPR--LLLLDNAEHMI 230 Query: 248 DEPSSSGKTLSIAFVNQRQYRAQQCFMSIK 277 E + + L A R + + I Sbjct: 231 VEVARVVECLLAAVPALRILVTSREPLRIA 260 >UniRef50_C2EBW1 Two-component response regulator n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2EBW1_9LACO Length = 247 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 2/104 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+ + + + + ++G+ L L P+ LL + A+H G+VLSR++L+ VW Sbjct: 141 QKRIFELNGITLCLDSFRAIKDGKDLQLTPKEFKLLDYLAKHCGQVLSREQLLQGVWGYD 200 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 I+ +V IS LR L + D ++P++I T GY + Sbjct: 201 ILGTSRIVDIHISHLRDKL-EADPNTPLWIKTNRGFGYSFSGKI 243 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 2/100 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVT- 64 + G+ V + +++ G+++ L P+ DLL+ A + G SR EL+D +W + Sbjct: 140 LDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSELLDVIWGYNFSGY 199 Query: 65 NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPV 104 H V I+ LR + + D +P+YI T GY+ + Sbjct: 200 EHTVNSHINRLRAKI-EPDMGNPIYILTTWGIGYRFNEDI 238 >UniRef50_A8MLN3 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A8MLN3_ALKOO Length = 231 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTNHVV 68 G + ++ +N + L + L+ FF ++ G+V ++++L +N+W SI+ ++ + Sbjct: 139 GPFKFDLKTYKLYKNNEFIELSSKENLLIKFFMENPGQVFTKEQLYENIWNNSIIDDNAI 198 Query: 69 TQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 I +LRK L+DN SP +I TV GYK + Sbjct: 199 MVYIHQLRKKLEDNV-KSPKHIVTVWGIGYKFIA 231 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 2/99 (2%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + V + + + ++ + R++ R +LL F A + V SR++L + +W V + Sbjct: 140 ICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIVFSREQLFEKIWGYDYVGD 199 Query: 66 H-VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V I+ +R+ ++D D +P + TV GY+ Sbjct: 200 SVTVMVHINRIREKIED-DSKNPKILETVWGAGYRFNKD 237 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 + + V ++ R +++ L PR DLLV+ +H +VL+R++++ +VW + + Sbjct: 133 LTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSVWGFDYIGD 192 Query: 66 -HVVTQSISELRKSLKDNDEDSPVYIATVPKRGY 98 +VV I +RK L + I T+ GY Sbjct: 193 TNVVDVYIRYIRKKL--DYPYEKQLIHTIRGVGY 224 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 2/98 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 V+R+ + + + +NG L L LL FA + +V +++++ +VW Sbjct: 127 KVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRSVWNEEYF 186 Query: 64 TN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + +++ + LR+ ++D D SP YI T+ GYKL Sbjct: 187 DDQNIINVHMRRLREKIED-DPSSPQYIKTLWGIGYKL 223 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 5/96 (5%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 +R G + P+ GR L L P+ DLL A H G+V SR++L+D +W + Sbjct: 133 IRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWGPDFQGD 192 Query: 66 -HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 V I LR L + I TV GY+ Sbjct: 193 ARTVDAHIKNLRDKLGE----GAGLILTVWGVGYRF 224 >UniRef50_A8W7F8 Putative regulator n=1 Tax=Streptomyces refuineus subsp. thermotolerans RepID=A8W7F8_9ACTO Length = 273 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 16/154 (10%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 + P + VG+ + P++ Q+ R + + +LL A ++ SR EL+ VW Sbjct: 129 LSPPALTVGKLQIYPTLRQVRVENRPIETTRKEFELLHLLAAEPDKLFSRAELLRRVWDY 188 Query: 61 SIVT-------NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGE 113 V+ + + +S LRK L SP +I TV G++ G+ Sbjct: 189 DDVSAEVTSLASRTIDTHVSSLRKKLG-----SPDWIITVRGVGFRFNGEATRDEPCPGK 243 Query: 114 EIMLSSPPPIPEAVPATDSPSHSLNIQNTATPPE 147 E ++ A P + + P+ Sbjct: 244 EPARANGTSGHHA----PWPPSRRIFREVNSAPQ 273 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR- 60 + +P ++ G + +L+ LL +F +H VLS+D++ + VW Sbjct: 130 SNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEKVWGYP 189 Query: 61 SIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSE 109 S N+ V I +LR+ + + D +P YI TV GY+ + Sbjct: 190 SYGDNNTVMVHIRKLREKI-ERDPSNPEYIVTVRGLGYRFIPNPEGKRS 237 >UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCX3_9FIRM Length = 228 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 49/101 (48%), Gaps = 4/101 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + ++++ + ++ + L + +LL + A++ G +SR+ELI+ +W Sbjct: 125 DERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQIWGYD 184 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + + I+ LRK L + + +I +V + GY+L+ Sbjct: 185 FIGESRTLDVHINSLRKKLGN---EYAHWIQSVRQVGYRLV 222 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 5/102 (4%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 Q+ VG + +S G+ + L + DLL F + +V SR++L+D +W Sbjct: 130 QEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQIWGTE 189 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 N V I LR L + YI TV GYK Sbjct: 190 YHGNLRTVDTHIKTLRLKLGEAGG----YIQTVWGIGYKFEA 227 >UniRef50_C9XSY6 Two-component response regulator n=15 Tax=Firmicutes RepID=C9XSY6_CLODC Length = 241 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWK-- 59 + +++ G+ + ++ +N +++ L LL+ Q+ VLSR ++++ +W Sbjct: 133 NKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEKLWDVT 192 Query: 60 RSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 V ++ +T I LR+ + D D P+YI TV GYK + Sbjct: 193 YDFVNDNTLTVYIKRLREKIGD-DLCEPIYIETVRGIGYKWIG 234 >UniRef50_A4XGM2 Two component transcriptional regulator, winged helix family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XGM2_CALS8 Length = 221 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN-HV 67 G+ + P ++ +G + L + +LL+F A++ V SRDE+++ VW + Sbjct: 128 GKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGFDFIGETRT 187 Query: 68 VTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V I +LR+ LKD I TV GYKL Sbjct: 188 VDVHIKQLREKLKD----YKFLIKTVWGVGYKLSED 219 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + +G ++ + +++ + + L + +LL +F + G LSR+++++NVW Sbjct: 127 DETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNNVWNYDY 186 Query: 63 VTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 + + + +LR + D YI T+ GYK V Sbjct: 187 FGDARTIDTHVKKLRSKMGDKG----DYIKTIWGMGYKFEV 223 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 3/100 (3%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI- 62 V +VG + ++ R +++ L + +L + G V +R ++ + VW Sbjct: 170 SVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWNYHFD 229 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 ++V I +LRK + + + I TV GYK+ Sbjct: 230 PGTNLVDVYIQKLRKKIDE--GEEQKLIQTVRGVGYKIEA 267 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 ++ G + ++ + L DLL A+ V SR +LID VW V Sbjct: 196 TILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQLIDRVWGEDWV 255 Query: 64 TN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + H+V I LR+ L D+D Y+ TV GY++ Sbjct: 256 GDEHLVDVHIGHLRRKL-DDDASRGQYLRTVRGVGYRM 292 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 3/103 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + +R G+ + ++ R GRQ+ L R LL + +H +VLSR +++ VW + Sbjct: 123 ESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWDYA 182 Query: 62 I-VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 ++VV + LR+ L + P I TV GY+ P Sbjct: 183 FDPGSNVVDVYVRYLRRKL--DRPGEPSLITTVRGAGYRFDPP 223 >UniRef50_UPI00019732E7 DNA-binding response regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI00019732E7 Length = 236 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Query: 9 GEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV--TNH 66 G ++ P Q+S NG +L L + DLL A H G+VLSR++L VW + V + Sbjct: 137 GNLVIDPIGRQVSLNGEELQLTRKEFDLLFCLASHVGQVLSREQLYQMVWDENSVYNVDE 196 Query: 67 VVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 V I LRK L YI V GY+ Sbjct: 197 TVKAHIKSLRKKL---TPSGAEYIKNVWGIGYRFSTD 230 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 1 MQQPVVR---VGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNV 57 M+ PV VG + + ++ NG +L L + + LL F ++ +LS++ L V Sbjct: 125 MEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQV 184 Query: 58 WKRSIVT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMV 102 W S ++ V I LR+ + + + P YI TV GY+L V Sbjct: 185 WGESFFGSDNTVMVHIRRLREKV-EPNPSEPTYIKTVKGLGYRLTV 229 >UniRef50_D2TJ93 Lateral flagellar transmembrane regulator n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJ93_CITRO Length = 325 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 104/300 (34%), Gaps = 24/300 (8%) Query: 6 VRVGEWLVTPSINQISR--NGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIV 63 + V W + S+N + G L LL A+++ VLSR L+ VWK IV Sbjct: 12 IVVNNWRMDSSLNALIHCETGETRRLGEYHFILLETLAKNADSVLSRSYLMAEVWKNRIV 71 Query: 64 TNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIML------ 117 + + +I LR ++ D+D I T+PK+GY + + Sbjct: 72 GGNSLPTAIHALRVAI-DDDGKQQEIIKTIPKKGYLFNKDYLTIEYSSEAAEHVVLSENK 130 Query: 118 -----------SSPPPIPEAVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFL 166 ++ P + A ++ L PP + +R T F + Sbjct: 131 NKENLTTTDFTAAEATAPWPLTADEAADQQLPSTAVVPPPAE--PSRRRNTLFIGAGIAV 188 Query: 167 LSLGICVALVAFSSLDTRLPMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDL 226 ++L + + F + T + R++ D NM + + ++S + Sbjct: 189 IALFLLSLIYYFQAPTTPVSPDSPRLVKETFDHADNM--EIYHLYTSTTNKKSTSLLAQH 246 Query: 227 VATSLNTFSTFMVHDKINYNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGST 286 ++ ++ + + + + K ++ + Q ++ + N D T Sbjct: 247 ISPAIARINELLKARNAKLTLYYKFALNKFTLDMVLDNQCDSKWQLALNFENWQNKDNET 306 >UniRef50_C8SQ16 Transcriptional regulator domain protein n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SQ16_9RHIZ Length = 496 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 69/477 (14%), Positives = 130/477 (27%), Gaps = 87/477 (18%) Query: 6 VRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSIVTN 65 V G + + + + + L R D+L EV+ + EL D W +V Sbjct: 3 VEFGNFRLKRTERLLLGPTGPVELSARSFDILAALLDRPDEVIGKAELFDAAWPGLVVEE 62 Query: 66 HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPE 125 + + +S LRK L I TV RGYK P S P Sbjct: 63 NTLQVHVSALRKLL------PVEMIVTVHGRGYKYAGP-------------KPSAATDPA 103 Query: 126 AVPATDSPSHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRL 185 ++ A S L N + PEQ + +F + Sbjct: 104 SMQARPS-IAVLPFDNMSGDPEQDYFSDGITEDIIAQLGKFREFLVIGRNSSFRVRGKKG 162 Query: 186 PMSKSRILLNPRDIDINMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINY 245 +++ + L + + V K + QL+ A + + + D I Sbjct: 163 DLAEVAMRLGVQYVVEGSVRKIGSRIRVSVQLTDAASMAHVWGEHYDRQ-----LDDIFA 217 Query: 246 NIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQND 305 D+ + R R + ++ + + G+ + Y Sbjct: 218 IQDDITQMIAA--------RLARQARTAIASRARAHPTGNVSAYENY------------- 256 Query: 306 LLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEI 365 +AL ET + P LG Sbjct: 257 -----LRALQL---VSQLETAVQAAP-----------------------------FLGIA 279 Query: 366 VQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAV 425 V+ P+F A + V+ +++ L T + E + + Sbjct: 280 VKLDPDFAGALGMLSFVETIKYFWSNDINDVEVGLRTAKAALQLDSE---EAYAHLANGF 336 Query: 426 SALVKGKTDESYQAINTGID-LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 481 +++ + E+ +++ + + + G A A P Sbjct: 337 ASMFLRRFREAETSLDRAVSLNPNDPFILIYNALLLNYVGKYDAALRELEQARRRDP 393 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 2/102 (1%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + ++ + ++ L+L + DLL F A+H +V SR +L+D VW Sbjct: 146 RQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVWGYRF 205 Query: 63 VT-NHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVP 103 H V I+ LR L + S + TV GYK +P Sbjct: 206 DGFEHTVNSHINRLRGKL-AHIPGSRELVQTVWGVGYKFTLP 246 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 3/101 (2%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 ++ ++ ++ ++ N ++ + P+ ++L + A + +VL+R +L+D VW Sbjct: 129 EKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRVWGYE 188 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLM 101 + V I +R L ++ I T+ GY+ Sbjct: 189 FNGDPRTVDVHIKRIRDKLAEHKAKWS--IVTIRGVGYRFE 227 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Query: 4 PVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI- 62 V++ + + ++ R G LTL R DLL F H +VL+R+++ID VW Sbjct: 125 KVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGLDFT 184 Query: 63 VTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 ++V+ I+ LR+ ++D I TV GY L Sbjct: 185 GGSNVLEVYINMLRQKIEDYGS---RIIHTVRGVGYVL 219 >UniRef50_B5Y819 DNA-binding response regulator YycF n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y819_COPPD Length = 236 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + + + + +++ N R L + +LL +GEVL+R+ L++ +W Sbjct: 132 ERRLVCDDIALDLRGHELRVNNRSYLLPKKQFELLRILMSRAGEVLTREYLLNEIWGADY 191 Query: 63 VTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKLMVPVI 105 + + I LR + + + + P YI TV GYK V Sbjct: 192 YGDKRTLDVHIKWLRDKI-EPNPNEPKYILTVRGVGYKFNGDVR 234 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 3 QPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRSI 62 + ++V ++ P ++ +G + L + LL + ++ VL+RD++++ VW Sbjct: 132 EERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILEKVWGYDY 191 Query: 63 VTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGY 98 + +VV I LR L D + YI TV GY Sbjct: 192 SGDTNVVDVYIRYLRAKLDDRFHE--KYIYTVRGVGY 226 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 3/100 (3%) Query: 2 QQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS 61 + + + ++ P +++R RQ+ L + DLL + +H +VL+R +++++VW Sbjct: 131 RDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGCD 190 Query: 62 IVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 + +++ I LR ++ I TV GY L Sbjct: 191 FTGDSNIIEVYIRYLRLKIE--GPGEKRLIQTVRGVGYVL 228 >UniRef50_B7K5A2 Two component transcriptional regulator, winged helix family n=8 Tax=Cyanobacteria RepID=B7K5A2_CYAP8 Length = 231 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 3/101 (2%) Query: 1 MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKR 60 M + ++ + ++ S ++ + + L + +LL + H EVL+R+++++NVW Sbjct: 130 MVKEQLQFDDLVLDLSTRRLFLKEKAIDLTMKEFELLKYLMSHPKEVLTREKILENVWGY 189 Query: 61 SIVTN-HVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL 100 +V+ I LR ++ I TV GY L Sbjct: 190 DFQGESNVIEVYIRYLRLKIESEG--HKRLIHTVRGVGYVL 228 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.119 0.280 Lambda K H 0.267 0.0363 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,103,738,907 Number of Sequences: 3077464 Number of extensions: 93003981 Number of successful extensions: 382138 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 5353 Number of HSP's successfully gapped in prelim test: 3802 Number of HSP's that attempted gapping in prelim test: 362717 Number of HSP's gapped (non-prelim): 12468 length of query: 512 length of database: 1,040,396,356 effective HSP length: 133 effective length of query: 379 effective length of database: 631,093,644 effective search space: 239184491076 effective search space used: 239184491076 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 95 (41.4 bits)