Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	H	Q	K	I	I	Q	D	L	I	A	W	I	D	E	H	I	D	Q	P	L	N	I	D	V	V	A	K	K	S	G	Y	S	K	W	Y	L	Q	R	M	F	R	T	V	T	H	Q	T	L	G	D	Y	I	R	Q	R	R	L	L
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Sequence		L	A	A	V	E	L	R	T	T	E	R	P	I	F	D	I	A	M	D	L	G	Y	V	S	Q	Q	T	F	S	R	V	F	R	R	Q	F	D	R	T	P	S	D	Y	R	H	R	L
Secondary structure
SS confidence
Disorder										?	?																																			?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3gbg chain A Region: 2 - 107 Aligned: 105 Modelled: 106 Confidence: 99.9% Identity: 18% PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 Phyre2 PDB 1d5y chain D Region: 3 - 106 Aligned: 104 Modelled: 104 Confidence: 99.9% Identity: 55% PDB header:transcription/dna Chain: D: PDB Molecule:rob transcription factor; PDBTitle: crystal structure of the e. coli rob transcription factor2 in complex with dna Phyre2 PDB 3oou chain A Region: 6 - 106 Aligned: 101 Modelled: 101 Confidence: 99.9% Identity: 27% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2118 protein; PDBTitle: the structure of a protein with unkown function from listeria innocua Phyre2 PDB 3oio chain A Region: 2 - 106 Aligned: 105 Modelled: 105 Confidence: 99.9% Identity: 27% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (arac-type dna-binding domain- PDBTitle: crystal structure of transcriptional regulator (arac-type dna-binding2 domain-containing proteins) from chromobacterium violaceum Phyre2 PDB 1bl0 chain A Region: 3 - 106 Aligned: 104 Modelled: 104 Confidence: 99.9% Identity: 39% PDB header:transcription/dna Chain: A: PDB Molecule:protein (multiple antibiotic resistance protein); PDBTitle: multiple antibiotic resistance protein (mara)/dna complex Phyre2 PDB 2k9s chain A Region: 4 - 107 Aligned: 104 Modelled: 104 Confidence: 99.9% Identity: 26% PDB header:transcription Chain: A: PDB Molecule:arabinose operon regulatory protein; PDBTitle: solution structure of dna binding domain of e. coli arac Phyre2 PDB 3mkl chain B Region: 6 - 106 Aligned: 100 Modelled: 100 Confidence: 99.9% Identity: 21% PDB header:transcription regulator Chain: B: PDB Molecule:hth-type transcriptional regulator gadx; PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12 Phyre2 PDB 3mn2 chain B Region: 5 - 107 Aligned: 103 Modelled: 103 Confidence: 99.9% Identity: 19% PDB header:transcription regulator Chain: B: PDB Molecule:probable arac family transcriptional regulator; PDBTitle: the crystal structure of a probable arac family transcriptional2 regulator from rhodopseudomonas palustris cga009 Phyre2 PDB 3lsg chain D Region: 5 - 96 Aligned: 92 Modelled: 92 Confidence: 99.8% Identity: 24% PDB header:transcription regulator Chain: D: PDB Molecule:two-component response regulator yesn; PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586 Phyre2 PDB 1bl0 chain A domain 2 Region: 58 - 107 Aligned: 50 Modelled: 50 Confidence: 99.3% Identity: 34% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: AraC type transcriptional activator Phyre2 PDB 1d5y chain A domain 2 Region: 58 - 106 Aligned: 49 Modelled: 49 Confidence: 99.3% Identity: 53% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: AraC type transcriptional activator Phyre2 PDB 1d5y chain A domain 1 Region: 3 - 55 Aligned: 53 Modelled: 53 Confidence: 99.0% Identity: 57% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: AraC type transcriptional activator Phyre2 PDB 1bl0 chain A domain 1 Region: 3 - 55 Aligned: 53 Modelled: 53 Confidence: 99.0% Identity: 43% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: AraC type transcriptional activator Phyre2 PDB 1zgw chain A Region: 3 - 61 Aligned: 57 Modelled: 59 Confidence: 98.8% Identity: 18% PDB header:transcription regulator/dna Chain: A: PDB Molecule:ada polyprotein; PDBTitle: nmr structure of e. coli ada protein in complex with dna Phyre2 PDB 2vke chain A domain 1 Region: 1 - 42 Aligned: 42 Modelled: 42 Confidence: 95.4% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Tetracyclin repressor-like, N-terminal domain Phyre2 PDB 3iwf chain A Region: 8 - 58 Aligned: 51 Modelled: 51 Confidence: 95.3% Identity: 12% PDB header:transcription regulator Chain: A: PDB Molecule:transcription regulator rpir family; PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a Phyre2 PDB 3b6a chain C Region: 1 - 42 Aligned: 42 Modelled: 42 Confidence: 94.9% Identity: 12% PDB header:transcription Chain: C: PDB Molecule:actr protein; PDBTitle: crystal structure of the streptomyces coelicolor tetr2 family protein actr in complex with actinorhodin Phyre2 PDB 1jt6 chain A domain 1 Region: 2 - 42 Aligned: 41 Modelled: 41 Confidence: 94.8% Identity: 20% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Tetracyclin repressor-like, N-terminal domain Phyre2 PDB 2eh3 chain A Region: 2 - 42 Aligned: 41 Modelled: 41 Confidence: 94.8% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of aq_1058, a transcriptional regulator (terr/acrr2 family) from aquifex aeolicus vf5 Phyre2 PDB 2fq4 chain A domain 1 Region: 2 - 42 Aligned: 41 Modelled: 41 Confidence: 94.6% Identity: 15% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Tetracyclin repressor-like, N-terminal domain Phyre2 1 c3gbgA_ 2 c1d5yD_ 3 c3oouA_ 4 c3oioA_ 5 c1bl0A_ 6 c2k9sA_ 7 c3mklB_ 8 c3mn2B_ 9 c3lsgD_ 10 d1bl0a2 11 d1d5ya2 12 d1d5ya1 13 d1bl0a1 14 c1zgwA_ 15 d2vkea1 16 c3iwfA_ 17 c3b6aC_ 18 d1jt6a1 19 c2eh3A_ 20 d2fq4a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3gbgA_ 99.9 18 PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 2 c1d5yD_ 99.9 55 PDB header:transcription/dna Chain: D: PDB Molecule:rob transcription factor; PDBTitle: crystal structure of the e. coli rob transcription factor2 in complex with dna 3 c3oouA_ 99.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2118 protein; PDBTitle: the structure of a protein with unkown function from listeria innocua 4 c3oioA_ 99.9 27 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (arac-type dna-binding domain- PDBTitle: crystal structure of transcriptional regulator (arac-type dna-binding2 domain-containing proteins) from chromobacterium violaceum 5 c1bl0A_ 99.9 39 PDB header:transcription/dna Chain: A: PDB Molecule:protein (multiple antibiotic resistance protein); PDBTitle: multiple antibiotic resistance protein (mara)/dna complex 6 c2k9sA_ 99.9 26 PDB header:transcription Chain: A: PDB Molecule:arabinose operon regulatory protein; PDBTitle: solution structure of dna binding domain of e. coli arac 7 c3mklB_ 99.9 21 PDB header:transcription regulator Chain: B: PDB Molecule:hth-type transcriptional regulator gadx; PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12 8 c3mn2B_ 99.9 19 PDB header:transcription regulator Chain: B: PDB Molecule:probable arac family transcriptional regulator; PDBTitle: the crystal structure of a probable arac family transcriptional2 regulator from rhodopseudomonas palustris cga009 9 c3lsgD_ 99.8 24 PDB header:transcription regulator Chain: D: PDB Molecule:two-component response regulator yesn; PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586 10 d1bl0a2 99.3 34 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 11 d1d5ya2 99.3 53 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 12 d1d5ya1 99.0 57 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 13 d1bl0a1 99.0 43 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 14 c1zgwA_ 98.8 18 PDB header:transcription regulator/dna Chain: A: PDB Molecule:ada polyprotein; PDBTitle: nmr structure of e. coli ada protein in complex with dna 15 d2vkea1 95.4 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 16 c3iwfA_ 95.3 12 PDB header:transcription regulator Chain: A: PDB Molecule:transcription regulator rpir family; PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a 17 c3b6aC_ 94.9 12 PDB header:transcription Chain: C: PDB Molecule:actr protein; PDBTitle: crystal structure of the streptomyces coelicolor tetr2 family protein actr in complex with actinorhodin 18 d1jt6a1 94.8 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 19 c2eh3A_ 94.8 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of aq_1058, a transcriptional regulator (terr/acrr2 family) from aquifex aeolicus vf5 20 d2fq4a1 94.6 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 21 d2fbqa1 not modelled 94.5 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 22 c3npiB_ not modelled 94.5 24 PDB header:gene regulation Chain: B: PDB Molecule:tetr family regulatory protein; PDBTitle: crystal structure of a tetr family regulatory protein (dip1788) from2 corynebacterium diphtheriae at 2.96 a resolution 23 d3c07a1 not modelled 94.5 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 24 d2i10a1 not modelled 94.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 25 d2id3a1 not modelled 94.4 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 26 c1jumB_ not modelled 94.4 20 PDB header:transcription Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine 27 d1pb6a1 not modelled 94.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 28 c2np5A_ not modelled 94.4 24 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator (rha1_ro04179) from2 rhodococcus sp. rha1. 29 d2np5a1 not modelled 94.3 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 30 d2g7la1 not modelled 94.3 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 31 c2g3bB_ not modelled 94.3 22 PDB header:transcription Chain: B: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 from rhodococcus sp. 32 c2qtqB_ not modelled 94.2 12 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution 33 c2f07A_ not modelled 94.2 27 PDB header:transcription Chain: A: PDB Molecule:yvdt; PDBTitle: crystal structure of yvdt from bacillus subtilis 34 c3kkcB_ not modelled 94.2 10 PDB header:transcription regulator Chain: B: PDB Molecule:tetr family transcriptional regulator; PDBTitle: the crystal structure of tetr transcriptional regulator from2 streptococcus agalactiae 2603v 35 d1ui5a1 not modelled 94.2 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 36 d2g3ba1 not modelled 94.2 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 37 c2dg7A_ not modelled 94.2 17 PDB header:gene regulation Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of the putative transcriptional regulator sco03372 from streptomyces coelicolor a3(2) 38 c3anpD_ not modelled 94.1 12 PDB header:transcription Chain: D: PDB Molecule:transcriptional repressor, tetr family; PDBTitle: crystal structure of thermus thermophilus fadr, a tetr familly2 transcriptional repressor, in complex with lauroyl-coa. 39 d2d6ya1 not modelled 94.1 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 40 d2bjca1 not modelled 94.1 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 41 c2fq4A_ not modelled 94.1 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the crystal structure of the transcriptional regulator (tetr family)2 from bacillus cereus 42 d1sgma1 not modelled 94.0 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 43 d2gena1 not modelled 94.0 28 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 44 c1sgmA_ not modelled 93.9 16 PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf; PDBTitle: crystal structure of hypothetical protein yxaf 45 d2hyja1 not modelled 93.9 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 46 c2of7A_ not modelled 93.9 15 PDB header:transcription Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: structural genomics, the crystal structure of a tetr-family2 transcriptional regulator from streptomyces coelicolor a3 47 c2nx4A_ not modelled 93.9 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:transcriptional regulator, tetr family protein; PDBTitle: the crystal structure of athe putative tetr-family transcriptional2 regulator rha06780 from rhodococcus sp. rha1. 48 c2o3fC_ not modelled 93.9 13 PDB header:transcription Chain: C: PDB Molecule:putative hth-type transcriptional regulator ybbh; PDBTitle: structural genomics, the crystal structure of the n-2 terminal domain of the putative transcriptional regulator3 ybbh from bacillus subtilis subsp. subtilis str. 168. 49 c1vi0B_ not modelled 93.8 20 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator 50 d2g7sa1 not modelled 93.8 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 51 c3bniA_ not modelled 93.8 20 PDB header:transcription regulator Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of tetr-family transcriptional regulator from2 streptomyces coelicolor 52 c3bhqB_ not modelled 93.8 24 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a putative tetr-family transcriptional regulator2 (mlr_4833) from mesorhizobium loti maff303099 at 1.54 a resolution 53 d2o3fa1 not modelled 93.8 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:RpiR-like 54 c3ppbB_ not modelled 93.8 15 PDB header:transcription regulator Chain: B: PDB Molecule:putative tetr family transcription regulator; PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution 55 d1v7ba1 not modelled 93.8 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 56 d1zk8a1 not modelled 93.7 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 57 c3f1bA_ not modelled 93.7 18 PDB header:transcription regulator Chain: A: PDB Molecule:tetr-like transcriptional regulator; PDBTitle: the crystal structure of a tetr-like transcriptional regulator from2 rhodococcus sp. rha1. 58 c2fbqA_ not modelled 93.7 12 PDB header:transcription Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: the crystal structure of transcriptional regulator pa3006 59 c2guhA_ not modelled 93.7 15 PDB header:transcription Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of the putative tetr-family transcriptional2 regulator from rhodococcus sp. rha1 60 c3nnrA_ not modelled 93.7 15 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a tetr-family transcriptional regulator2 (maqu_3571) from marinobacter aquaeolei vt8 at 2.49 a resolution 61 c1bjzA_ not modelled 93.7 17 PDB header:transcription regulation Chain: A: PDB Molecule:tetracycline repressor; PDBTitle: tetracycline chelated mg2+-ion initiates helix unwinding for tet2 repressor induction 62 c3g56A_ not modelled 93.7 20 PDB header:dna binding protein Chain: A: PDB Molecule:regulator of macrolide 2'-phosphotransferase i; PDBTitle: structure of the macrolide biosensor protein, mphr(a) 63 c2raeA_ not modelled 93.7 27 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, acrr family protein; PDBTitle: crystal structure of a tetr/acrr family transcriptional regulator from2 rhodococcus sp. rha1 64 d1j5ya1 not modelled 93.6 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like 65 d2fx0a1 not modelled 93.6 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 66 c3dcfB_ not modelled 93.6 20 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator of the tetr/acrr PDBTitle: crystal structure of transcriptional regulator of the2 tetr/acrr family (yp_290855.1) from thermobifida fusca yx-3 er1 at 2.50 a resolution 67 c3dewA_ not modelled 93.6 12 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the structure of a putative tetr family transcriptional regulator from2 geobacter sulfurreducens pca. 68 c3gziA_ not modelled 93.6 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution 69 d1t56a1 not modelled 93.6 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 70 c2id3A_ not modelled 93.6 12 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of transcriptional regulator sco5951 from2 streptomyces coelicolor a3(2) 71 c2wuiA_ not modelled 93.6 12 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of mexz, a key repressor responsible for2 antibiotic resistance in pseudomonas aeruginosa. 72 c3o60A_ not modelled 93.5 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0861 protein; PDBTitle: the crystal structure of lin0861 from listeria innocua to 2.8a 73 c3bcgA_ not modelled 93.5 15 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator acrr; PDBTitle: conformational changes of the acrr regulator reveal a2 mechanism of induction 74 c2g7lA_ not modelled 93.5 12 PDB header:transcription Chain: A: PDB Molecule:tetr-family transcriptional regulator; PDBTitle: crystal structure of putative transcription regulator sco7704 from2 streptomyces coelicor 75 c3lwjA_ not modelled 93.5 17 PDB header:transcription regulator Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 (yp_752756.1) from syntrophomonas wolfei str. goettingen at 2.07 a3 resolution 76 d2gfna1 not modelled 93.5 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 77 c3c07B_ not modelled 93.5 15 PDB header:transcription regulator Chain: B: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of a tetr family transcriptional regulator from2 streptomyces coelicolor a3(2) 78 c3on4D_ not modelled 93.5 12 PDB header:transcription Chain: D: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of tetr transcriptional regulator from legionella2 pneumophila 79 d1vi0a1 not modelled 93.5 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 80 c3he0A_ not modelled 93.4 22 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the structure of a putative transcriptional regulator tetr family2 protein from vibrio parahaemolyticus. 81 c1ui6B_ not modelled 93.4 17 PDB header:antibiotic Chain: B: PDB Molecule:a-factor receptor homolog; PDBTitle: crystal structure of gamma-butyrolactone receptor (arpa-like protein) 82 c2d6yA_ not modelled 93.4 17 PDB header:gene regulation Chain: A: PDB Molecule:putative tetr family regulatory protein; PDBTitle: crystal structure of transcriptional factor sco4008 from streptomyces2 coelicolor a3(2) 83 c3bjbE_ not modelled 93.4 24 PDB header:transcription regulator Chain: E: PDB Molecule:probable transcriptional regulator, tetr family protein; PDBTitle: crystal structure of a tetr transcriptional regulator from rhodococcus2 sp. rha1 84 c1zk8A_ not modelled 93.4 19 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of transcriptional regulator from bacillus cereus2 atcc 14579 85 c2zb9A_ not modelled 93.4 20 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of tetr family transcription regulator2 sco0332 86 c2genA_ not modelled 93.3 28 PDB header:transcription Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: structural genomics, the crystal structure of a probable2 transcriptional regulator from pseudomonas aeruginosa pao1 87 d2hkua1 not modelled 93.3 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 88 d2g7ga1 not modelled 93.3 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 89 d2o7ta1 not modelled 93.3 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 90 d1qpza1 not modelled 93.3 20 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 91 c2hytA_ not modelled 93.3 10 PDB header:transcription Chain: A: PDB Molecule:tetr-family transcriptional regulator; PDBTitle: crystal structure of a tetr-family transcriptional regulator (eca1819)2 from pectobacterium atrosepticum at 1.64 a resolution 92 c3g7rB_ not modelled 93.2 12 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of sco4454, a tetr-family transcriptional2 regulator from streptomyces coelicolor 93 c2gfnA_ not modelled 93.2 23 PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional regulator pksa related protein; PDBTitle: crystal structure of hth-type transcriptional regulator pksa related2 protein from rhodococcus sp. rha1 94 c2pbxB_ not modelled 93.1 7 PDB header:transcription Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein; PDBTitle: vibrio cholerae hapr 95 c2yvhA_ not modelled 93.1 29 PDB header:transcription/dna Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of the operator-binding form of the multi-drug2 binding transcriptional repressor cgmr 96 c3b81A_ not modelled 93.1 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, acrr family; PDBTitle: crystal structure of predicted dna-binding transcriptional regulator2 of tetr/acrr family (np_350189.1) from clostridium acetobutylicum at3 2.10 a resolution 97 c2i10A_ not modelled 93.0 18 PDB header:transcription Chain: A: PDB Molecule:putative tetr transcriptional regulator; PDBTitle: putative tetr transcriptional regulator from rhodococcus sp. rha1 98 c2ibdB_ not modelled 93.0 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:possible transcriptional regulator; PDBTitle: crystal structure of probable transcriptional regulatory protein2 rha5900 99 c2vprA_ not modelled 93.0 17 PDB header:transcription Chain: A: PDB Molecule:tetracycline resistance repressor protein; PDBTitle: tet repressor class h in complex with 5a,6-2 anhydrotetracycline-mg 100 d2id6a1 not modelled 92.9 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 101 c2o7tA_ not modelled 92.9 22 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a tetr family transcriptional regulator2 (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 a3 resolution 102 c3mvpA_ not modelled 92.8 22 PDB header:transcription regulator Chain: A: PDB Molecule:tetr/acrr transcriptional regulator; PDBTitle: the crystal structure of a tetr/acrr transcriptional regulator from2 streptococcus mutans to 1.85a 103 d2vkva1 not modelled 92.8 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 104 c3iuvA_ not modelled 92.8 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized tetr family protein; PDBTitle: the structure of a member of tetr family (sco1917) from2 streptomyces coelicolor a3 105 c3bruA_ not modelled 92.8 20 PDB header:transcription Chain: A: PDB Molecule:regulatory protein, tetr family; PDBTitle: crystal structure of regulatory protein tetr from rhodobacter2 sphaeroides 106 c2rasB_ not modelled 92.8 22 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a putative tetr/acrr family transcriptional2 regulator (saro_0558) from novosphingobium aromaticivorans dsm at3 1.80 a resolution 107 d2fd5a1 not modelled 92.8 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 108 c2g7gA_ not modelled 92.8 8 PDB header:transcription Chain: A: PDB Molecule:rha04620, putative transcriptional regulator; PDBTitle: the crystal structure of the putative transcriptional regulator2 rha04620 from rhodococcus sp. rha1 109 c3c2bA_ not modelled 92.8 18 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of tetr transcriptional regulator from agrobacterium2 tumefaciens 110 c3qkxB_ not modelled 92.7 13 PDB header:transcription regulator Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator hi_0893; PDBTitle: crystal structure of a tetr-family transcriptional regulator (hi0893)2 from haemophilus influenzae rd at 2.35 a resolution 111 c3f0cA_ not modelled 92.7 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of transcriptional regulator from cytophaga2 hutchinsonii atcc 33406 112 c3fiwB_ not modelled 92.6 19 PDB header:transcription regulator Chain: B: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: structure of sco0253, a tetr-family transcriptional regulator from2 streptomyces coelicolor 113 c3dpjB_ not modelled 92.6 10 PDB header:dna binding protein Chain: B: PDB Molecule:transcription regulator, tetr family; PDBTitle: the crystal structure of a tetr transcription regulator2 from silicibacter pomeroyi dss 114 c3rh2A_ not modelled 92.6 24 PDB header:dna binding protein Chain: A: PDB Molecule:hypothetical tetr-like transcriptional regulator; PDBTitle: crystal structure of a hypothetical tetr-like transcriptional2 regulator (sama_0099) from shewanella amazonensis sb2b at 2.42 a3 resolution 115 d1z0xa1 not modelled 92.6 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 116 c2uxoB_ not modelled 92.6 12 PDB header:transcription Chain: B: PDB Molecule:hth-type transcriptional regulator ttgr; PDBTitle: ttgr in complex with tetracycline 117 c3s5rA_ not modelled 92.6 10 PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator tetr family; PDBTitle: crystal structure of a putative transcriptional regulator of the tetr2 family (syn_02108) from syntrophus aciditrophicus at 2.60 a3 resolution 118 c2q24A_ not modelled 92.6 20 PDB header:transcription Chain: A: PDB Molecule:putative tetr family transcriptional regulator; PDBTitle: crystal structure of tetr transcriptional regulator sco0520 from2 streptomyces coelicolor 119 d1biaa1 not modelled 92.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like 120 c2iu5A_ not modelled 92.5 5 PDB header:transcription Chain: A: PDB Molecule:hth-type dhaklm operon transcriptional activator dhas; PDBTitle: dihydroxyacetone kinase operon activator dhas

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0