BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (316 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P76086 Phenylacetic acid degradation operon negative re... 642 0.0 UniRef50_C4X7Q1 Transcriptional repressor for phenylacetic acid ... 502 e-141 UniRef50_A5W398 Transcriptional regulator, PaaX family n=15 Tax=... 252 1e-65 UniRef50_Q2W5Q7 Phenylacetic acid-responsive transcriptional rep... 230 5e-59 UniRef50_B0VB47 Phenylacetic acid degradation operon negative re... 222 1e-56 UniRef50_Q5P0I2 PadR protein, putative regulator of anaerobic ph... 215 2e-54 UniRef50_Q13AY1 Phenylacetic acid degradation operon negative re... 208 2e-52 UniRef50_C4ZL33 Transcriptional regulator, PaaX family n=1 Tax=T... 204 3e-51 UniRef50_A0Z5G1 Phenylacetic acid degradation operon negative re... 199 1e-49 UniRef50_Q0K1H1 Transcriptional regulator, PAAX-family n=3 Tax=C... 199 2e-49 UniRef50_A1SSP9 PaaX domain protein, C-terminal domain n=1 Tax=P... 197 5e-49 UniRef50_A9IJP6 Phenylacetic acid degradation operon negative re... 188 2e-46 UniRef50_Q47J36 Phenylacetic acid degradation operon negative re... 182 1e-44 UniRef50_C1A4Z4 Phenylacetic acid degradation operon negative re... 181 2e-44 UniRef50_B1KMA4 Transcriptional regulator, PaaX family n=1 Tax=S... 175 2e-42 UniRef50_B6R4J9 Phenylacetic acid degradation operon negative re... 170 5e-41 UniRef50_A7IDQ3 Transcriptional regulator, PaaX family n=5 Tax=R... 160 7e-38 UniRef50_UPI00016938B8 repressor in the phenylacetic acid catabo... 154 6e-36 UniRef50_Q67SZ7 Transcriptional regulatory protein, repressor-ty... 149 2e-34 UniRef50_B1YIK0 Transcriptional regulator, PaaX family n=12 Tax=... 147 7e-34 UniRef50_Q8L3B8 PadR protein (Fragment) n=1 Tax=Azoarcus evansii... 144 3e-33 UniRef50_B8IKF5 Transcriptional regulator, PaaX family n=1 Tax=M... 144 6e-33 UniRef50_UPI0000F2FC7D PaaX n=1 Tax=Acinetobacter baumannii ATCC... 141 3e-32 UniRef50_A4IPK1 Repressor in the phenylacetic acid catabolic pat... 131 4e-29 UniRef50_B8IM94 Transcriptional regulator, PaaX family n=1 Tax=M... 125 3e-27 UniRef50_Q07SZ1 Phenylacetic acid degradation operon negative re... 124 4e-27 UniRef50_C4KFG5 Transcriptional regulator, PaaX family n=8 Tax=S... 119 1e-25 UniRef50_C4KFT2 Transcriptional regulator, PaaX family n=8 Tax=S... 118 3e-25 UniRef50_D0DCP9 Transcriptional regulator, PaaX family n=1 Tax=C... 113 9e-24 UniRef50_A6UH21 Transcriptional regulator, PaaX family n=3 Tax=R... 112 2e-23 UniRef50_A5FUP1 Transcriptional regulator, PaaX family n=1 Tax=A... 110 7e-23 UniRef50_UPI0001B54B27 repressor in the phenylacetic acid catabo... 108 3e-22 UniRef50_C7QFV2 Transcriptional regulator, PaaX family n=1 Tax=C... 107 4e-22 UniRef50_A0NQP8 Putative regulator of phenylacetic acid degradat... 105 2e-21 UniRef50_A4X2T5 Transcriptional regulator, PaaX family n=9 Tax=A... 105 3e-21 UniRef50_A9DGK3 Phenylacetic acid degradation operon negative re... 104 5e-21 UniRef50_A3K7C6 Putative regulator of phenylacetic acid degradat... 103 1e-20 UniRef50_A1BBH9 PaaX domain protein n=1 Tax=Paracoccus denitrifi... 100 6e-20 UniRef50_Q2HR06 Phenyl acetic acid responsive transcriptional re... 100 1e-19 UniRef50_B9QZJ2 PaaX-like protein n=1 Tax=Labrenzia alexandrii D... 100 1e-19 UniRef50_C1XSN8 Phenylacetic acid-responsive transcriptional rep... 98 3e-19 UniRef50_A3JQN4 Phenylacetic acid degradation operon negative re... 97 9e-19 UniRef50_A4FEE0 Repressor in the phenylacetic acid catabolism n=... 87 8e-16 UniRef50_UPI0001C31D78 transcriptional regulator, PaaX family n=... 87 9e-16 UniRef50_C7MUF0 Phenylacetic acid-responsive transcriptional rep... 87 1e-15 UniRef50_C8X827 Transcriptional regulator, PaaX family n=1 Tax=N... 85 4e-15 UniRef50_UPI0001B5864E repressor in the phenylacetic acid catabo... 84 4e-15 UniRef50_C4DKB7 Phenylacetic acid-responsive transcriptional rep... 84 5e-15 UniRef50_A8LCV5 Transcriptional regulator, PaaX family n=1 Tax=F... 84 7e-15 UniRef50_Q0SFS4 Transcriptional repressor for phenylacetic acid ... 84 9e-15 UniRef50_C1RIS8 Phenylacetic acid-responsive transcriptional rep... 82 2e-14 UniRef50_Q72HH2 PhaN n=3 Tax=Thermus RepID=Q72HH2_THET2 82 3e-14 UniRef50_UPI0001B55AC7 probable phenylacetic acid degradation op... 80 7e-14 UniRef50_A1RBT3 Putative transcriptional regulator, PaaX-like pr... 79 2e-13 UniRef50_B1N6G0 Putative phenylacetic acid degradation operon ne... 78 3e-13 UniRef50_A8LTJ1 Transcriptional regulator PaaX n=1 Tax=Dinoroseo... 78 4e-13 UniRef50_B9NQI2 PaaX domain protein n=2 Tax=Rhodobacteraceae Rep... 77 8e-13 UniRef50_A4V8M5 Putative transcriptional regulator n=2 Tax=Arthr... 77 9e-13 UniRef50_Q0RIQ5 Putative repressor n=1 Tax=Frankia alni ACN14a R... 74 5e-12 UniRef50_UPI0000510548 transcriptional regulator, PaaX family pr... 72 2e-11 UniRef50_C6D2L6 Putative transcriptional regulator, PaaX family ... 69 3e-10 UniRef50_Q2HWJ0 Putative transcriptional regulator n=1 Tax=Nocar... 68 3e-10 UniRef50_UPI000050F8F1 PaaX family transcriptional regulator n=1... 66 2e-09 UniRef50_C7QAQ9 Transcriptional regulator, PaaX family n=11 Tax=... 65 3e-09 UniRef50_D1WW52 Transcriptional regulator, PaaX family n=4 Tax=S... 65 4e-09 UniRef50_Q1GJJ7 PaaX-like protein n=9 Tax=Rhodobacterales RepID=... 62 2e-08 UniRef50_D1VIM9 Transcriptional regulator, PaaX family n=1 Tax=F... 62 3e-08 UniRef50_A9DZC9 PaaX domain protein n=4 Tax=Rhodobacteraceae Rep... 60 9e-08 UniRef50_C4RH20 Putative uncharacterized protein n=1 Tax=Micromo... 58 4e-07 UniRef50_D1BV77 Transcriptional regulator, PaaX family n=2 Tax=A... 58 4e-07 UniRef50_C4RGY6 PaaX family transcriptional regulator n=2 Tax=Mi... 57 8e-07 UniRef50_C1RMN4 Phenylacetic acid-responsive transcriptional rep... 57 8e-07 UniRef50_A3VFU0 PaaX domain protein n=1 Tax=Rhodobacterales bact... 52 4e-05 UniRef50_Q28UN6 PaaX-like protein n=1 Tax=Jannaschia sp. CCS1 Re... 51 6e-05 UniRef50_B7X5K7 Putative transcriptional regulator, PaaX family ... 50 2e-04 UniRef50_A1UBK1 PaaX domain protein, C-terminal domain n=11 Tax=... 47 9e-04 UniRef50_A4A7F5 PaaX-like protein n=2 Tax=unclassified Gammaprot... 47 0.001 UniRef50_C1RIT6 Phenylacetic acid-responsive transcriptional rep... 45 0.003 UniRef50_A6GRV6 Putative uncharacterized protein n=1 Tax=Limnoba... 42 0.039 UniRef50_B5JMA2 PaaX-like protein C-terminal domain n=1 Tax=Verr... 40 0.083 >UniRef50_P76086 Phenylacetic acid degradation operon negative regulatory protein paaX n=30 Tax=Enterobacteriaceae RepID=PAAX_ECOLI Length = 316 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/316 (100%), Positives = 316/316 (100%) Query: 1 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA 60 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA Sbjct: 1 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA 60 Query: 61 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK 120 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK Sbjct: 61 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK 120 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA Sbjct: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV Sbjct: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 Query: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR Sbjct: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 Query: 301 FGGLNIEQEALCQFIR 316 FGGLNIEQEALCQFIR Sbjct: 301 FGGLNIEQEALCQFIR 316 >UniRef50_C4X7Q1 Transcriptional repressor for phenylacetic acid degradation n=4 Tax=Enterobacteriaceae RepID=C4X7Q1_KLEPN Length = 308 Score = 502 bits (1292), Expect = e-141, Method: Compositional matrix adjust. Identities = 254/305 (83%), Positives = 274/305 (89%), Gaps = 1/305 (0%) Query: 1 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA 60 MSKLD FIQ AV A+P+SGTSLI+SLYGD+L RGGE+WLGS+AALLEGLGFGERFVRTA Sbjct: 1 MSKLDAFIQQAVTAMPISGTSLIASLYGDALLQRGGEVWLGSVAALLEGLGFGERFVRTA 60 Query: 61 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK 120 LFRLNKE WLDV RIGRRSFY LSDKGLRLTRRAE KIYRA P WDG WLLLLSEGL+K Sbjct: 61 LFRLNKEEWLDVVRIGRRSFYRLSDKGLRLTRRAEHKIYRASAPEWDGTWLLLLSEGLEK 120 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 + LADVKKQL+WQGFGALAPSL+ASPSQKL DVQ+LLHEAGVA+NVICFEA PLALSRA Sbjct: 121 NVLADVKKQLLWQGFGALAPSLLASPSQKLTDVQSLLHEAGVAENVICFEAHSPLALSRA 180 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEA-ADELTPERAFHIQLLLIHFYRRV 239 ALR+RVEECWHLTEQN MYE FI FRPL+PLL++ ELTP+R F IQLLLIHFYRRV Sbjct: 181 ALRSRVEECWHLTEQNEMYEAFIALFRPLLPLLRDCDPSELTPDRCFQIQLLLIHFYRRV 240 Query: 240 VLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQ 299 VLKDPLLPEELLPAHWAG TARQLCINIYQRV+P ALAFVSEKGE+SVGELP PG LY+Q Sbjct: 241 VLKDPLLPEELLPAHWAGQTARQLCINIYQRVSPGALAFVSEKGESSVGELPVPGPLYYQ 300 Query: 300 RFGGL 304 RFGGL Sbjct: 301 RFGGL 305 >UniRef50_A5W398 Transcriptional regulator, PaaX family n=15 Tax=Proteobacteria RepID=A5W398_PSEP1 Length = 334 Score = 252 bits (643), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 129/304 (42%), Positives = 180/304 (59%), Gaps = 1/304 (0%) Query: 1 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA 60 ++ L+ I P+ +SLI +LYGD++ GG +WLGSL LLE +G ER +RT+ Sbjct: 31 LAPLNHLITRFQEQTPIRASSLIITLYGDAIEPHGGTVWLGSLINLLEPIGINERLIRTS 90 Query: 61 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK 120 +FRL KEGWL ++GRRS+YSL+ G R +A ++Y QPAWDG W L+L L+ Sbjct: 91 IFRLTKEGWLTAEKVGRRSYYSLTGTGRRRFEKAFKRVYSPSQPAWDGAWTLVLLSQLEA 150 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 V+++L WQGFG +AP+L+ P AD+ L + D+ I F+ L+ Sbjct: 151 GKRKAVREELEWQGFGVMAPNLLGCPRADRADLVATLRDLEAGDDSIVFDTHTQEVLASK 210 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 A+RA+V E W + E Y FIQ FRPL LKE L + F + LLIH YRR++ Sbjct: 211 AMRAQVRESWRIDELGQQYSEFIQLFRPLWQGLKEQP-LLDAQDCFLARTLLIHEYRRLL 269 Query: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 L+DP LP+ELLP W G ARQLC N+Y+ V A +++ ET+ G LP +++R Sbjct: 270 LRDPQLPDELLPGDWEGRAARQLCRNLYRLVFAKAEEWLNAALETADGPLPDVSESFYKR 329 Query: 301 FGGL 304 FGGL Sbjct: 330 FGGL 333 >UniRef50_Q2W5Q7 Phenylacetic acid-responsive transcriptional repressor n=3 Tax=Proteobacteria RepID=Q2W5Q7_MAGSA Length = 308 Score = 230 bits (587), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 123/287 (42%), Positives = 170/287 (59%), Gaps = 5/287 (1%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 SLI ++YGD++SH GG WLGS+ L+E LG ER VRT++FRL+KE WL +IGRRS+ Sbjct: 22 SLIITVYGDAISHHGGSAWLGSVINLVEPLGLNERIVRTSVFRLSKEAWLSSMQIGRRSY 81 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLS--EGLDKSTLADVKKQLIWQGFGAL 138 Y L++ G R A ++IY WDG+W L ++ EG+D +++ L W GFG L Sbjct: 82 YRLTEMGRRRFEAAHNRIYHFNGKPWDGRWTLAVTNIEGMDAERRDSLRRDLGWLGFGQL 141 Query: 139 APSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAM 198 A ++ P + + V+ L EAGV D + A ++ ALR + CW L Sbjct: 142 ASGVLVHPDR--SAVRQALAEAGVQDRAVMMVASAEDWVTPEALRDLIHTCWDLDRLAGD 199 Query: 199 YETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGH 258 Y F+ +FRPL L A EL P+ F ++ LL+H YRR +L+DP+LP+ELLPAHW G Sbjct: 200 YNEFLDTFRPLWQALS-GAGELDPQMCFVVRTLLMHGYRRALLRDPMLPDELLPAHWPGT 258 Query: 259 TARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLN 305 +AR LC N+Y+ V AA V ET+ G +P Y+ RFGGL Sbjct: 259 SARVLCRNLYRLVQTAAETHVMGMLETAEGPVPEAHPAYYTRFGGLQ 305 >UniRef50_B0VB47 Phenylacetic acid degradation operon negative regulatory protein n=11 Tax=Acinetobacter RepID=B0VB47_ACIBY Length = 321 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 121/312 (38%), Positives = 177/312 (56%), Gaps = 2/312 (0%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 +K+ I V +SGTSLIS+++GDS+ HRGG I L SL LLE GF +R VRT++ Sbjct: 5 AKIQQIIDSVVKNETLSGTSLISTIFGDSVLHRGGNISLASLIQLLELFGFNDRAVRTSV 64 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS 121 FRL K WL +IGR SFY ++D +AE +IY + WD W L+L LD Sbjct: 65 FRLVKNDWLCSDKIGRTSFYRITDSSRSTYLQAEQRIYNDQMKEWDHYWDLILMSSLDTE 124 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA- 180 A +KK+L W GF ++ +LMA P ++Q LL + +++ V+ F+A+ + + Sbjct: 125 NKALLKKELEWLGFANISTNLMAYPGCNRIELQRLLVDLNMSEQVVVFKAETLQLFNNSV 184 Query: 181 -ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRV 239 + + W + E Y F+ FR + LL + ++L P +AF I+ LLIH+YRR+ Sbjct: 185 DTIGRMLRTNWPIDELRQRYLQFLDIFREIGVLLMQENEQLEPVQAFQIRTLLIHYYRRI 244 Query: 240 VLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQ 299 +LKDP LP ELLP W +AR L +NIY++V A + T+ G +P + Y++ Sbjct: 245 LLKDPALPLELLPTDWPAISARTLSMNIYKKVFEPADEYFLSVAATAEGPMPNATAHYWR 304 Query: 300 RFGGLNIEQEAL 311 RFGGL E L Sbjct: 305 RFGGLVATNERL 316 >UniRef50_Q5P0I2 PadR protein, putative regulator of anaerobic phenylacetate metabolism n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P0I2_AZOSE Length = 318 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/289 (38%), Positives = 166/289 (57%), Gaps = 2/289 (0%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 V SLI ++YGD ++ GG +WLGS L+E LG ER VRT+++RL+++ WL +IG Sbjct: 19 VRANSLIITIYGDFIAPHGGTVWLGSFIRLVEPLGLNERMVRTSVYRLSQDKWLVSEQIG 78 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKW-LLLLSEGLDKSTLADVKKQLIWQGF 135 R+S+YSL+ G R A +IY A Q W+G+W L++L L ++K+L W G+ Sbjct: 79 RKSYYSLTASGRRRFEHAYRRIYDARQLPWNGEWQLVILPSTLPAPQRDALRKELSWAGY 138 Query: 136 GALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQ 195 G +AP ++A PS + +L E G D V+ A ALS L+ ECW+L Sbjct: 139 GTIAPCVLAHPSADTETLLEILQETGTHDKVVPMTAHNLGALSNRPLQDLARECWNLEAI 198 Query: 196 NAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHW 255 A Y F RP++ L+ A D L PE+ F +Q L +H +RR +L DPLLP++L+P W Sbjct: 199 GATYREFADRLRPVLRALRTARD-LDPEQCFLVQTLTMHDFRRALLHDPLLPDQLMPVDW 257 Query: 256 AGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGL 304 +G AR++C +IY+ A + +T G LP +++RFGGL Sbjct: 258 SGAVAREVCRDIYRITYRLAQQHLMATCKTPNGPLPPAAPYFYERFGGL 306 >UniRef50_Q13AY1 Phenylacetic acid degradation operon negative regulatory protein paaX n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q13AY1_RHOPS Length = 312 Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 115/307 (37%), Positives = 176/307 (57%), Gaps = 4/307 (1%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 L +I + P+ SLI ++YGD ++ GG +WLG L+E LG R VRT++FR Sbjct: 6 LSQWIAKQLADRPLRANSLIITIYGDMIAPLGGTVWLGGFIRLVEPLGLNARAVRTSVFR 65 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTL 123 L++E WL +IGRRS+YSL+ G R A +IY +W G W ++L+ G S Sbjct: 66 LSREKWLVSEQIGRRSYYSLTATGRRRFELAFRRIYEDASISWAGDWQVVLTPG--DSLT 123 Query: 124 ADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALR 183 ++K+L+W G+ A+AP +A PS + + +L AG D V+ +A+ ALS ++ Sbjct: 124 PALRKELLWAGYAAIAPGALAHPSAQTDALLDILQNAGAHDKVVVLQARTLGALSSRPIK 183 Query: 184 ARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKD 243 V++CW+L + Y++FI FR + L+ ++ L PE+ F I+ LL+H +RRV L+D Sbjct: 184 ELVDQCWNLGKVAGEYQSFIDRFRSVARALRSTSN-LDPEQCFIIRTLLMHEFRRVQLRD 242 Query: 244 PLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGG 303 P LP +LLP W G AR +C +IY+ + + ETS G LP + RFGG Sbjct: 243 PSLPRQLLPDDWPGDKARVMCRDIYRLCWVKTEEHLMQMLETSDGPLPPAEKSFHARFGG 302 Query: 304 LNIEQEA 310 + I++EA Sbjct: 303 V-IDEEA 308 >UniRef50_C4ZL33 Transcriptional regulator, PaaX family n=1 Tax=Thauera sp. MZ1T RepID=C4ZL33_THASP Length = 319 Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 108/295 (36%), Positives = 167/295 (56%), Gaps = 3/295 (1%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 +S SLI S+YGD ++ GG +WL L L+ G ER VRT+++RL ++ WL+ ++G Sbjct: 19 ISANSLIISVYGDLIAVHGGVVWLADLIRLMAPFGLNERVVRTSVYRLVQDDWLESGQVG 78 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKW-LLLLSEGLDKSTLADVKKQLIWQGF 135 RRS+Y L+ G+R A +I+ E W G W +++L L+ +++++L W G+ Sbjct: 79 RRSYYRLAASGMRRFAPAWRRIFEPEGEGWSGTWQVVMLPSALEARVADNLRRELSWAGY 138 Query: 136 GALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQ 195 GAL ++ P+ + ++ +L G+ D V+ A+ ++ AA V ECW L Sbjct: 139 GALNAGVLLRPTDDASTLRNILDGCGLRDRVVPLTARGLDGVTGAATDELVRECWDLQAI 198 Query: 196 NAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHW 255 A Y+ FI+ FRPL L A E PE+AF +Q LL+H +RRV+L DP LP +++P W Sbjct: 199 AATYDGFIEHFRPL--LRAFGAGEAEPEQAFLVQTLLMHEFRRVLLHDPQLPVQVMPNRW 256 Query: 256 AGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEA 310 G AR+LC +Y+ AA + T G LP P + +F+RFGGL + A Sbjct: 257 RGDAARELCARLYRLSWRAACRHLQASCATPEGPLPPPSAQFFRRFGGLELPPAA 311 >UniRef50_A0Z5G1 Phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5G1_9GAMM Length = 291 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 109/285 (38%), Positives = 156/285 (54%), Gaps = 1/285 (0%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 SLI +L+GD +S GGEIWLGS+A +E LG +R VRT++FRL KEGWL+V R GR+SF Sbjct: 5 SLIITLFGDVISQHGGEIWLGSIAKSVEALGVNDRLVRTSVFRLAKEGWLEVEREGRKSF 64 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAP 140 Y + G + +RA +IY A +W G W LL+ L ++ + ++ L W GF A++ Sbjct: 65 YGFTRSGSKEYQRAAQRIYSAGGDSWHGTWQLLVPTNLPEAQRDNFRRSLHWLGFRAISN 124 Query: 141 SLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYE 200 A P ++ LL E + V+ EA+ + R V E W L Y Sbjct: 125 GTFARPGGDEDSIRDLLDEFDLNSGVVVMEAKTSSLTTPKEWRELVSEHWQLRNLEDEYR 184 Query: 201 TFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTA 260 I F PL L + TP AF +LLLIH YRR++L+D LP +LLP W G A Sbjct: 185 QIIGLFSPLKKAL-DKGKVPTPLEAFQARLLLIHEYRRILLRDTPLPTDLLPNRWQGTVA 243 Query: 261 RQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLN 305 RQL +Y+ +A + +++ + G LP ++QRFGG++ Sbjct: 244 RQLAQALYRDLAKPSTSYIQTELVNRQGRLPESEYYFYQRFGGIS 288 >UniRef50_Q0K1H1 Transcriptional regulator, PAAX-family n=3 Tax=Cupriavidus RepID=Q0K1H1_RALEH Length = 312 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/287 (38%), Positives = 162/287 (56%), Gaps = 5/287 (1%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + S++ +L+GD ++ R IWLGSL L G +R VRTA FRL + WL +R+G Sbjct: 22 LGANSMLVTLFGDVVAPRPQAIWLGSLIRLAAPFGINDRLVRTATFRLTADDWLAATRMG 81 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTL-ADVKKQLIWQGF 135 RRS+Y LSD GL+ A +IY E WDG+W L++ G ++T+ +K++L+W+GF Sbjct: 82 RRSYYGLSDAGLQRVLHAGKRIYAGEASEWDGRWTLVMVRGDVRATVRQKLKRELLWEGF 141 Query: 136 GALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQ 195 GA+AP +MA P LA ++ +L A D+V EA A S L+A + + + L + Sbjct: 142 GAIAPGVMAHPQADLASLREILQAARAQDDVAVMEASSLEAFSIRPLQALMHQTFKLGDV 201 Query: 196 NAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHW 255 A ++ ++ F PL E A L P AF ++ LL+H YRRV+L+DP LPE +LP W Sbjct: 202 AAAWQALLRRFAPLA----EEAAGLAPADAFFVRTLLVHEYRRVLLRDPNLPEAMLPQDW 257 Query: 256 AGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFG 302 G TAR LC +Y + A+ ++ E + G L RFG Sbjct: 258 PGRTARGLCHTLYGALLDASEDYLHRVVEAADGSLHDANRSLRLRFG 304 >UniRef50_A1SSP9 PaaX domain protein, C-terminal domain n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SSP9_PSYIN Length = 285 Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 106/286 (37%), Positives = 164/286 (57%), Gaps = 11/286 (3%) Query: 25 SLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLS 84 + GD L H I + SL E LGF +RFVR++LFRL ++GW+D ++GR+S+Y ++ Sbjct: 2 TFLGDYLCHSDSAIGMSSLINFFESLGFNQRFVRSSLFRLKQDGWVDAKKVGRKSYYYMT 61 Query: 85 DKGLRLTRRAESKIYRAEQPAWDGKW--LLLLSEGLDKSTLADVKKQLIWQGFGALAPSL 142 + R A KIY E+PAW+G+W + + S + +S L K+L GFG L + Sbjct: 62 PERFDEIREANKKIYNTEKPAWNGRWNFIHIPSSTITESNLK--GKELAKYGFGILNKGM 119 Query: 143 MASPSQKLA---DVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMY 199 Q A + +L + +D I A++ ++ V + W+L + N Y Sbjct: 120 YIQADQGQALQPSFKRIL--SKCSDATILTGAEL-VSCKEKNKSKFVSDTWNLDKINDDY 176 Query: 200 ETFIQSFRPLVPLLKEA-ADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGH 258 F+ F P+ +++EA +D L E F ++LLLIHFYRR++++DPLLP+E LP +W+G Sbjct: 177 GAFVNMFDPIELMIQEAGSDALDNEDCFKLRLLLIHFYRRIIIRDPLLPDEFLPHNWSGR 236 Query: 259 TARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGL 304 A+++ INIYQ++ A A ++E GET G LP S Y+ RF GL Sbjct: 237 RAQEITINIYQKIHLQAKAHITEHGETIDGLLPLLASDYYSRFNGL 282 >UniRef50_A9IJP6 Phenylacetic acid degradation operon negative regulatory protein n=5 Tax=Bordetella RepID=A9IJP6_BORPD Length = 311 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 111/306 (36%), Positives = 156/306 (50%), Gaps = 8/306 (2%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 S + I + P SL SL GD+L+ GG IWLG + LLE LG ER +RT++ Sbjct: 6 SPIGRHIARLLKEDPPRAKSLCVSLLGDALACHGGAIWLGGIIELLEPLGINERLLRTSV 65 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS 121 FRL +GWL R GRRS Y LS++GLR T A +IY W+G+W L+ L + Sbjct: 66 FRLVAQGWLQAERHGRRSLYQLSEQGLRHTAHASQRIYVGPAADWNGEWTLVALPRLGNN 125 Query: 122 TLA---DVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALS 178 LA +++++L W+GFG +AP L A P +L + G+ D + + Sbjct: 126 GLAERTELRRELAWEGFGMIAPGLFAHPQADARAAHDILEKLGIPDKALVLSGRDLAGAG 185 Query: 179 RAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRR 238 + + +CW L Y F + F PL LL E D P AF ++LL+H +RR Sbjct: 186 GLPIASLAPQCWSLDALAGQYRHFSRQFGPLEKLLDEPLD---PADAFATRMLLLHTWRR 242 Query: 239 VVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSE-KGETSVGELPAPGSLY 297 +VL DP LP +LP W GH AR LC IY ++ A+ + G + P ++Y Sbjct: 243 IVLHDPQLPVPMLPERWPGHAARALCGQIYWKLFDASEQHLDAVAGRDNERYTPLSPAVY 302 Query: 298 FQRFGG 303 RFGG Sbjct: 303 -TRFGG 307 >UniRef50_Q47J36 Phenylacetic acid degradation operon negative regulatory protein paaX n=4 Tax=Bacteria RepID=Q47J36_DECAR Length = 352 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 116/308 (37%), Positives = 169/308 (54%), Gaps = 15/308 (4%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 S+L+ F Q V SLI +++GD++ RGG IWLGSL LLE L ER +RT++ Sbjct: 44 SRLNEFRQQRR----VQAGSLIITVFGDAILPRGGRIWLGSLIRLLEPLELNERLIRTSV 99 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEG-LDK 120 FRL KE WL IGRR+ Y L+ G R A IY ++ P WD +W L+L G LD Sbjct: 100 FRLVKEEWLRTETIGRRADYVLTPSGRRRFEEASRHIYASDAPLWDRRWRLILVVGDLDP 159 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPL--ALS 178 V++ L WQGFGAL PS +L+ V L G++ + A +PL A S Sbjct: 160 KLREQVRRALFWQGFGALGADCFVHPSAELSSVLDTLITEGLSSAI---GALMPLFAADS 216 Query: 179 RAALRAR----VEECWHLTEQNAMYETFIQSFRPLVP-LLKEAADELTPERAFHIQLLLI 233 R+A A V W L Y F+ +++P++ L ++ ++ + AF +++LLI Sbjct: 217 RSAQSASDADLVHRAWDLGHLAEAYSAFVATYQPILDELRRDHLAGVSEQDAFLLRILLI 276 Query: 234 HFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAP 293 H YRR++L+DP LPE LLPA+W G +R LC +Y+R+ P A + ++ + G +P Sbjct: 277 HDYRRLLLRDPELPEVLLPANWPGQQSRLLCKELYKRLEPLASRHLDQQLCLADGRVPEE 336 Query: 294 GSLYFQRF 301 +RF Sbjct: 337 DLSLPERF 344 >UniRef50_C1A4Z4 Phenylacetic acid degradation operon negative regulatory protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A4Z4_GEMAT Length = 308 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 98/267 (36%), Positives = 153/267 (57%), Gaps = 6/267 (2%) Query: 16 PVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRI 75 P TSL+ +++GD+++ GG WL +L L++ G ER VRT+++RL ++ WL+ R Sbjct: 22 PPRATSLVVTVFGDAIAPHGGSAWLRTLIDLMDTFGINERAVRTSVYRLAEDAWLEAQRQ 81 Query: 76 GRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLL-LLSEGLD-KSTLADVKKQLIWQ 133 GR+S Y+L++ G+R A +IY P WDG+W+L L+ G + ++ D++++L W+ Sbjct: 82 GRQSRYALTESGVRRFMLASRRIYHPGLPTWDGQWILVLIPRGAEVMASRTDLRRELAWE 141 Query: 134 GFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQ-IPLALSRAALRARVEECWHL 192 GF + P L+A P ++ LL E GV D+ AQ +P +R +++ W L Sbjct: 142 GFATVTPGLLAHPQGDTTRLRELLDELGVRDDAFVVRAQDLPGVAAREL--SQLASYWPL 199 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 Y F+ F P+ + + AD +P +AF I+ LL+H YRRVVL DP LP +LP Sbjct: 200 ESVATQYRDFLARFEPIAEVAGK-ADACSPRQAFLIRTLLVHAYRRVVLHDPRLPAAMLP 258 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFV 279 A W G TA L +Y V P A A++ Sbjct: 259 ADWPGRTAYALSRRLYLAVTPGAEAYL 285 >UniRef50_B1KMA4 Transcriptional regulator, PaaX family n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KMA4_SHEWM Length = 311 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 154/284 (54%), Gaps = 1/284 (0%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 SG S++ +L+GD +S G IWLGSL L+ G+ ER +RT++FRL K WL ++GR Sbjct: 20 SGPSMLVTLFGDLVSQHGNWIWLGSLITGLKPFGYSERLIRTSVFRLVKSDWLITKKVGR 79 Query: 78 RSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGA 137 R++Y+LS+ +A +IY +E + W +++ + + KKQL W GF Sbjct: 80 RTYYALSETAKAHHDKAARRIYSSEPSSLADAWTVVIPIFVPDNVKETFKKQLQWLGFSP 139 Query: 138 LAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNA 197 L A ++ L E G+ D VI ++ + S+ + V+E W L A Sbjct: 140 LTNGAYAHLEVDKQSLEDTLLELGLKDAVIVLSCKVDGSHSKNVFKRLVKEYWGLETLEA 199 Query: 198 MYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAG 257 Y+ F+ ++RPL+ + + E F +++LLIH YRR++LKD LPE++LP W G Sbjct: 200 SYKEFLDAYRPLIIKFNKGKMP-SDETCFLLRILLIHEYRRILLKDKQLPEDMLPNGWVG 258 Query: 258 HTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 A +L +Y ++A A++ + E E + G LP + ++QRF Sbjct: 259 FEAHELVGKLYAQLAQASVNYAVENLENAQGHLPYVSAKFWQRF 302 >UniRef50_B6R4J9 Phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R4J9_9RHOB Length = 298 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 161/290 (55%), Gaps = 18/290 (6%) Query: 16 PVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRI 75 P+ S+I S++GD ++ RGGE+W+G++ +++ +G VRTA+ RL +GWL+ +RI Sbjct: 20 PIRSWSMIISIFGDCVAQRGGELWMGNITEIMQMIGINSGVVRTAMSRLASDGWLERTRI 79 Query: 76 GRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLL-LLSEGLDKSTLADVKKQLIWQG 134 GR SFY L+ G +A +IY +G W+ +LSEG D+ AD ++QLI QG Sbjct: 80 GRNSFYRLTKMGREAFGQATPRIYARGPAKGNGSWITAILSEGDDR---ADRREQLIEQG 136 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 +G +AP+++ P ++ + ++ +++ P +A AR + W+L Sbjct: 137 YGVIAPNVLIKPDNGQGAPKS-------SSKIVYMQSKAP--ADKALQLAR--QAWNLDS 185 Query: 195 QNAMYETFIQSFRPLVPLLKEAADE---LTPERAFHIQLLLIHFYRRVVLKDPLLPEELL 251 Y FI+++ L L EA+ ++PE A I+++LIH RR+VL+DP LP + L Sbjct: 186 LQQGYSEFIENYHGLHACLSEASGSEPVISPEDALVIRIMLIHDLRRLVLRDPELPLQAL 245 Query: 252 PAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 P +WAG AR+L IY + ++ + + G LP P +F+RF Sbjct: 246 PDNWAGSIARELAAGIYSALRDRGEIWLDSYAKNAEGTLPPPEPAFFERF 295 >UniRef50_A7IDQ3 Transcriptional regulator, PaaX family n=5 Tax=Rhizobiales RepID=A7IDQ3_XANP2 Length = 305 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 107/301 (35%), Positives = 149/301 (49%), Gaps = 26/301 (8%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 LD + H V A P S+I ++YGD++ RGG +WLG+L A +GL + VRTA+ R Sbjct: 23 LDLILDH-VRAEPSRTWSIIVTIYGDAIVPRGGSVWLGTLLAFFKGLDIADGVVRTAMSR 81 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTL 123 L +GWL +RIGR SFY L+DKG RA IY P W G + +LL ++ + Sbjct: 82 LAADGWLTRTRIGRNSFYGLADKGRETFARATEHIYSHRPPEWRGHFQMLL---IEPAAR 138 Query: 124 ADVKKQLIWQGFGALAPSLMASPSQKLADVQTL----LHEAGVADNVICFEAQIPLALSR 179 + L G+G P + +P+ + L L +G EAQ LA Sbjct: 139 EGARAALDAAGYGVPLPGVFIAPAGAEVPEEALAALRLEVSGTP------EAQQELA--- 189 Query: 180 AALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRV 239 W L E Y +F++ F PL L A + LT A ++LLIH YRR+ Sbjct: 190 -------GRAWRLEETAQAYVSFMEVFAPLRAALA-AGETLTDLEAMVARVLLIHEYRRI 241 Query: 240 VLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQ 299 VL+DP+LP +LPA W G AR LC +IY V A+ ++ + G+ P P S Sbjct: 242 VLRDPILPAAILPADWPGPAARALCADIYAHVIAASERWLDDNAVGEDGD-PLPASAKIG 300 Query: 300 R 300 R Sbjct: 301 R 301 >UniRef50_UPI00016938B8 repressor in the phenylacetic acid catabolic pathway n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016938B8 Length = 281 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 88/261 (33%), Positives = 135/261 (51%), Gaps = 8/261 (3%) Query: 31 LSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRL 90 + H G EIW+GSL L+ G E+ VR A+ R+ ++GWL+ ++G RS+YS+S +G + Sbjct: 18 VRHYGSEIWVGSLTCLMGEFGLTEQAVRAAISRMLRQGWLESLKVGNRSYYSMSPRGKKR 77 Query: 91 TRRAESKIYRAEQPAWDGKWLLLLSEGLDKS--TLADVKKQLIWQGFGALAPSLMASPSQ 148 A ++IY+ E W+GKW + +K ++K+L W GFG L S SP+ Sbjct: 78 LDEAAARIYKQETDKWNGKWCIASYNIPEKQRGMRDQLRKELAWLGFGMLTTSTWISPND 137 Query: 149 KLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRP 208 V+ ++ G+ D+V F A ++ + R V++CW++ + NA Y FI +RP Sbjct: 138 LADRVKEIVESHGITDHVEIFRAD---HVAWSEPRQLVQKCWNIEDINAAYAEFIDEYRP 194 Query: 209 LVPLL---KEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCI 265 L E + F + L+H YR+ + DP PEELLP W G A QL Sbjct: 195 GYDSLLSKMEKGQSVPDGYCFVEKTKLVHQYRKFLFIDPDFPEELLPEVWLGKEADQLFQ 254 Query: 266 NIYQRVAPAALAFVSEKGETS 286 N Y + P A F + E+S Sbjct: 255 NYYDLLHPGASRFFEQVYESS 275 >UniRef50_Q67SZ7 Transcriptional regulatory protein, repressor-type n=1 Tax=Symbiobacterium thermophilum RepID=Q67SZ7_SYMTH Length = 285 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/273 (34%), Positives = 139/273 (50%), Gaps = 10/273 (3%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + SL+ +L+GD + H GGE W +LAA + G E +R AL R+ ++GWL+V ++G Sbjct: 1 MKARSLLFNLWGDYIQHVGGEAWASTLAAWVRPFGVSEAALRQALSRMARQGWLEVRKVG 60 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQG 134 R+ Y+LS G R A ++Y WDG+W +L+ + ++ D++++LIW G Sbjct: 61 NRTCYALSAAGRRRIAEASRRVYDGRDVDWDGRWRVLVYSVPEALRNRRNDLRRELIWTG 120 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 F L+P SP+ V+ LL G+ F A S L V CW L Sbjct: 121 FAHLSPGTWISPNPLEDSVRELLRRYGLEPYATLFVAPYAEPWSAPDL---VRRCWDLEA 177 Query: 195 QNAMYETFIQSFRPLVPLLKEAADEL-TPERAFHIQLLLIHFYRRVVLKDPLLPEELLPA 253 A Y+ FI + P + EA+ L + E F Q+ L+H YR+ + DP LP LLP Sbjct: 178 IQASYDRFIARWEPRL----EASSRLHSDEERFVEQIRLVHDYRKFLFVDPGLPRRLLPD 233 Query: 254 HWAGHTARQLCINIYQRVAPAALAFVSEKGETS 286 W GH AR+L Y R+ P AL F+ E + Sbjct: 234 TWRGHDARRLFQAYYARLRPGALRFLERHFEPT 266 >UniRef50_B1YIK0 Transcriptional regulator, PaaX family n=12 Tax=Bacillales RepID=B1YIK0_EXIS2 Length = 294 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 93/270 (34%), Positives = 143/270 (52%), Gaps = 8/270 (2%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 S+I ++YGD + H G +IW+GSL LL+ G E+ VR A+ R+ K+GWL + G +SF Sbjct: 7 SMIFTVYGDYIRHYGNQIWVGSLIRLLKEFGHNEQAVRVAVSRMVKQGWLTSQKQGTKSF 66 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKW-LLLLSEGLDKSTLAD-VKKQLIWQGFGAL 138 YSL+ +G+ A +IY++ WDGKW L+ + DK + D ++K+L W GFG L Sbjct: 67 YSLTPRGVERMEEAARRIYKSTPHVWDGKWRTLMYTIPEDKRQIRDELRKELSWSGFGNL 126 Query: 139 APSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAM 198 + + SP+ + + L+ + + F + +L VE + L E Sbjct: 127 SNGVWISPNPLEKEAERLIEAYDIKAYIDFFVGEYHGPQQDQSL---VERAFPLDELQER 183 Query: 199 YETFIQSF--RPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWA 256 YE FI + R +V + E+ E+ F + L+H YR+ + DP LP+ELLP W+ Sbjct: 184 YEQFIAEYSRRYIVHQSRIQLGEMDEEQCFVERTTLVHEYRKFLFTDPGLPQELLPDEWS 243 Query: 257 GHTARQLCINIYQRVA-PAALAFVSEKGET 285 GH A L Y+ +A PA+ F S ET Sbjct: 244 GHHAALLFEQYYRLLAEPASRFFESIFRET 273 >UniRef50_Q8L3B8 PadR protein (Fragment) n=1 Tax=Azoarcus evansii RepID=Q8L3B8_AZOEV Length = 205 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 112/200 (56%), Gaps = 1/200 (0%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 L+ +I + V SLI ++YGD ++ GG +WLGS L+E LG ER VRT+++R Sbjct: 6 LEQWINDYLAERRVRANSLIITVYGDFIAPHGGTVWLGSFIRLVEPLGLNERMVRTSVYR 65 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKW-LLLLSEGLDKST 122 L+++ WL+ +IGR+S+YSL+ G R A +IY Q W+G+W L++L L Sbjct: 66 LSQDNWLESEQIGRKSYYSLTASGRRRFEHAYRRIYDTPQDTWNGEWQLVVLPSTLGSPE 125 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 ++K+L W G+G +AP +M PS +Q +L + G D V+ +A ALS L Sbjct: 126 RDTLRKELSWAGYGNVAPGVMGHPSPDTETLQEILQDTGTQDKVVPMQASTIGALSTKPL 185 Query: 183 RARVEECWHLTEQNAMYETF 202 + ECW+L A Y F Sbjct: 186 QDLARECWNLDAIEATYSEF 205 >UniRef50_B8IKF5 Transcriptional regulator, PaaX family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IKF5_METNO Length = 292 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 101/287 (35%), Positives = 142/287 (49%), Gaps = 17/287 (5%) Query: 15 VPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR 74 P+ SL+ +++GD++ RGG + L SL A+ L G+ VRTAL RL +GW + Sbjct: 16 TPIRAGSLVVTVFGDAVVPRGGVLSLESLLAITRALRIGDGVVRTALSRLVADGWFARRK 75 Query: 75 IGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQG 134 +GR SFY L+ +G +A +IY + W G++ LLL +G + ++ L G Sbjct: 76 VGRNSFYRLTPEGAEPFAQATRRIYDSAPQPWSGRFDLLLLDGAEDRP--GLRADLAAAG 133 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 +GAL P LM + + L A D P R A RA W L Sbjct: 134 YGALGPDLMIGAVAQAGEGAFLRLAATPED---------PETARRLAARA-----WPLDA 179 Query: 195 QNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 A Y F+ +F P L E + A ++LLLIH YRRVVL+DP LP LLP Sbjct: 180 VGARYARFVAAFGPAAASLAE-GERPDDLHALVLRLLLIHEYRRVVLRDPGLPACLLPED 238 Query: 255 WAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 W G AR LC +Y+ + PA+ ++S T G LP PG + +RF Sbjct: 239 WPGEAARDLCGRLYRSLLPASERWLSAHARTDEGPLPPPGPAFAERF 285 >UniRef50_UPI0000F2FC7D PaaX n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F2FC7D Length = 227 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 93 RAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLMASPSQKLAD 152 +AE +IY + WD W L+L LD A +KK+L W GF ++ +LMA P + Sbjct: 2 QAEQRIYNDQMKEWDHYWDLILMSSLDTENKALLKKELEWLGFANISTNLMAYPGCNRIE 61 Query: 153 VQTLLHEAGVADNVICFEAQIPLALSRA--ALRARVEECWHLTEQNAMYETFIQSFRPLV 210 +Q LL + +++ V+ F+A+ + + + + W + E Y F+ FR + Sbjct: 62 LQRLLVDLNMSEQVVVFKAETLQLFNNSVDTIGRMLRTNWPIDELRQRYLQFLDIFREIG 121 Query: 211 PLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQR 270 LL + ++L P +AF I+ LLIH+YRR++LKDP LP ELLP W +AR L +NIY++ Sbjct: 122 VLLMQENEQLEPVQAFQIRTLLIHYYRRILLKDPALPLELLPTDWPAISARTLSMNIYKK 181 Query: 271 VAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEAL 311 V A + T+ G +P + Y++RFGGL E L Sbjct: 182 VFEPADEYFLSVAATAEGPMPNATAHYWRRFGGLVATNERL 222 >UniRef50_A4IPK1 Repressor in the phenylacetic acid catabolic pathway-like protein n=5 Tax=Geobacillus RepID=A4IPK1_GEOTN Length = 291 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 134/262 (51%), Gaps = 7/262 (2%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 +L+ +L+G+ + H G E+W+GSL ++ G E +R A R+ ++ + +V +IG S+ Sbjct: 5 ALMFTLFGEYIQHYGNEVWIGSLIQMMSHFGISESSIRGAALRMVQQEFFEVRKIGNNSY 64 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKW-LLLLSEGLDKSTL-ADVKKQLIWQGFGAL 138 YSL+ KG R +++Y WDG+W +L S +K L + ++K+L GFG + Sbjct: 65 YSLTPKGKRTMMDGFTRVYSLRNYKWDGRWRVLTYSVPEEKRELRSQIRKELSLMGFGLI 124 Query: 139 APSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAM 198 + ASP+ V + + + VI F A ++ S + +E W Sbjct: 125 SHGTWASPNPIEPQVMEWIKDYHLEPYVILFTADSIVSHSNEQI---IERGWDFAYIAKE 181 Query: 199 YETFIQSF-RPLVPLLKEA-ADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWA 256 Y+ FI+++ R K+A +ELT F + L+H YR DP P +LLP W+ Sbjct: 182 YDKFIETYERKYEEFQKQAWNNELTDRECFIERTKLVHEYRSFFFIDPGFPHDLLPDDWS 241 Query: 257 GHTARQLCINIYQRVAPAALAF 278 G AR+L N++Q +A A+ + Sbjct: 242 GTRARELFFNVHQLLAIPAIRY 263 >UniRef50_B8IM94 Transcriptional regulator, PaaX family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IM94_METNO Length = 301 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 129/282 (45%), Gaps = 21/282 (7%) Query: 12 VNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLD 71 + VP+ S I +LYGD + RGG +W+G++ E +G E VRTA+ RL G L Sbjct: 21 IEKVPLRSGSFIVTLYGDVVEPRGGRLWMGNIVDTCEAVGISETLVRTAVSRLVSAGQLT 80 Query: 72 VSRIGRRSFYSLSDKGLRLTRRAESKIYRA-EQPAWDGKWLLLLSEGLDKSTLADVKKQL 130 R GRRSFY L++ R A ++ ++ W W LD + L Sbjct: 81 GERQGRRSFYRLTEAARREFLSAARILFEPHDETGWRFVW-------LDPDRSGEGGPML 133 Query: 131 IWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECW 190 G+ L P P+ H+A ++ FE A + LR W Sbjct: 134 EQAGYVRLGPQWFLGPA----------HQALSDPSLAIFEGTT--AAAGPVLRRLAAAHW 181 Query: 191 HLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 + NA Y+ F+ +F P+ L + + +A H++LLL+H YR L+D LP E Sbjct: 182 DIASFNAAYDAFLAAFAPVSEALAKGVRP-SDAQALHLRLLLVHTYRLAALRDARLPAET 240 Query: 251 LPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPA 292 LP W+GH AR+L ++Y R++P A V + LPA Sbjct: 241 LPPDWSGHRARRLFADLYLRLSPGADRHVGHHLLSGESTLPA 282 >UniRef50_Q07SZ1 Phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07SZ1_RHOP5 Length = 289 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 137/287 (47%), Gaps = 17/287 (5%) Query: 16 PVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRI 75 P SLI + +GD++ RGG +WLG+L L L VRTA+ RL +GWL ++ Sbjct: 17 PSRTGSLIITFHGDAILPRGGSVWLGTLLRFLAMLEIDGGVVRTAVSRLAADGWLARDKV 76 Query: 76 GRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKW-LLLLSEGLDKSTLADVKKQLIWQG 134 GR+SFY L+ G A +Y WDG+ LLL+ G D+ + G Sbjct: 77 GRKSFYRLAPTGRERFELAVQHVYNPRSAPWDGRLDLLLIGNGTDREAARAALAE---AG 133 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 FG+ P + +PS V +V ++ + R ++ W L Sbjct: 134 FGSPMPGVWVAPSGT------------VVPSVAADAIRLDVTADSETGRRLIDASWSLES 181 Query: 195 QNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 A Y F ++F PL + D + + A ++LLIH YRRV+L+DPLLPE LLP Sbjct: 182 IAAAYRDFRKTFAPLEAWIG-TDDAPSSDDAMLARVLLIHHYRRVLLRDPLLPEALLPPD 240 Query: 255 WAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 W AR+ C +Y+ + PA+ ++ GE+ G LP PG RF Sbjct: 241 WPAREAREFCGRVYRALLPASEQWLEAYGESLNGALPPPGPELKARF 287 >UniRef50_C4KFG5 Transcriptional regulator, PaaX family n=8 Tax=Sulfolobus RepID=C4KFG5_SULIK Length = 266 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 127/261 (48%), Gaps = 9/261 (3%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWL-DVSRIGRRS 79 SL +LYGD + GG I SL + + GF E +R L R+ K G + + R+ Sbjct: 5 SLFFTLYGDYVKDSGGTISSKSLIVIFKEFGFSEGAIRAGLHRMKKAGLIVGIKGENRKV 64 Query: 80 FYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLI--WQGFGA 137 Y LS+KG+ ++Y + WD KW +++ + + + + W GFG Sbjct: 65 SYKLSEKGMLRLLEGTRRVYEKVRRRWDNKWRIVVYNIPENNRELRDRLRRELKWLGFGM 124 Query: 138 LAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNA 197 LA S SP+ ++ +++ + N I + I +A + VE+CW+L+E Sbjct: 125 LAQSTWISPNPIEDTLKNFINDHYGSSNGI--QVDIFVANYLGEPKGLVEKCWNLSEVEQ 182 Query: 198 MYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAG 257 Y F++ + ++ E L AF ++LL+H YR+ + DP LPE+LLP +W G Sbjct: 183 AYRAFLEKWTGVL----EKVSSLKSNEAFVTRILLVHEYRKFLNIDPDLPEDLLPPNWIG 238 Query: 258 HTARQLCINIYQRVAPAALAF 278 +TA L + + + + P A F Sbjct: 239 YTAYDLFMKLREELTPKANEF 259 >UniRef50_C4KFT2 Transcriptional regulator, PaaX family n=8 Tax=Sulfolobus RepID=C4KFT2_SULIK Length = 261 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 132/260 (50%), Gaps = 18/260 (6%) Query: 21 SLISSLYGD-SLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRS 79 +LI ++ GD +LS + G I SL L+ GF VRT L RL +EG ++ + R S Sbjct: 5 TLIFTILGDYNLSKKNGAIRARSLVKLVGPFGFTNSAVRTTLHRLKREGL--ITSVNRGS 62 Query: 80 FYSLSDKGLRLTRRAESKIYRAEQPAWDGKW-LLLLSEGLDKSTLAD-VKKQLIWQGFGA 137 Y+ S + L A ++ WDGKW +++ + G D L + ++++L W GFG Sbjct: 63 -YTFSQETLLKFETAIRRVKEWRFGHWDGKWRVVVYNFGEDNKALRNKIRRELKWLGFGT 121 Query: 138 LAPSLMASPSQKLADVQTLLHEAGVAD--NVICFEAQIPLALSRAALRARVEECWHLTEQ 195 LA S SP+ L DV + E D V F A P + + CW+L+E Sbjct: 122 LASSTWVSPNP-LEDVVNEMIEKYWKDGGKVYLFIAYFP-----QDPQIIIRTCWNLSEI 175 Query: 196 NAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHW 255 Y+ FI + L+ D+L+P AF ++ ++H YR+ + DP LPEELLP +W Sbjct: 176 ELKYKEFISKWIGLL----NKIDKLSPAEAFVNKITILHEYRKFLHVDPGLPEELLPNNW 231 Query: 256 AGHTARQLCINIYQRVAPAA 275 G+ A +L NIY + P A Sbjct: 232 IGYEAYKLFKNIYDSLTPLA 251 >UniRef50_D0DCP9 Transcriptional regulator, PaaX family n=1 Tax=Citreicella sp. SE45 RepID=D0DCP9_9RHOB Length = 290 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 129/289 (44%), Gaps = 23/289 (7%) Query: 22 LISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFY 81 I +LYGD + RGG +W+GSL G E VRTA+ RL G L+ RIGR+S+Y Sbjct: 25 FIVTLYGDVVEPRGGMLWMGSLIECCAVHGLNESLVRTAVSRLVGAGRLEGVRIGRKSYY 84 Query: 82 SLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPS 141 LSD R A ++ PA WLL LSE TL + + W L+P+ Sbjct: 85 RLSDAARGEFREAARLLF--SPPAAPEDWLLCLSE-----TLRETEPPAPW---ARLSPN 134 Query: 142 LMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYET 201 + +P+ DV L D V+ + L A E W L E YE Sbjct: 135 VAMAPNND--DVAPL-------DGVLMRAKHLE---GHGDLHALAHETWRLDEVALAYER 182 Query: 202 FIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTAR 261 F++ L+ L E L+P A ++L L+H YR L DP LP P W AR Sbjct: 183 FLERHSGLLDRL-EGDAPLSPSVALALRLRLVHDYRHAALSDPRLPRAACPQDWPAERAR 241 Query: 262 QLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEA 310 QL ++ Y ++ A AFV + + G L A + +R L E A Sbjct: 242 QLFVSAYVGLSAPAEAFVGTQFLSPDGALAARNAETERRLFQLKREAAA 290 >UniRef50_A6UH21 Transcriptional regulator, PaaX family n=3 Tax=Rhizobiaceae RepID=A6UH21_SINMW Length = 305 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 131/294 (44%), Gaps = 20/294 (6%) Query: 8 IQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKE 67 I+ ++ VP+ S I ++YGD + RGG IW+G+L + G+G E VRTA+ RL Sbjct: 16 IREILDEVPLRAASFIVTIYGDVVEPRGGAIWIGNLIEICAGVGISETLVRTAVSRLVAA 75 Query: 68 GWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVK 127 G L R GRRSFY L+D A I+ P + W + G S+ D Sbjct: 76 GRLAGEREGRRSFYRLTDAARTEFAGAARVIF---GPPEEASWHFVQLMG---SSAEDRM 129 Query: 128 KQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVE 187 L G+ L+P L + + T + A + F A+I A L+A Sbjct: 130 LMLERSGYARLSPRL----AIGVRPFPTAIMPA------LVFRAEI--AEGAEELKAFAS 177 Query: 188 ECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLP 247 W L Y F+ SF+ L A +TP +LLL+H +R V L+DP LP Sbjct: 178 ASWDLAPHAEAYRRFLGSFQSLA--APADAGSMTPADCLTARLLLVHQFRFVALRDPRLP 235 Query: 248 EELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 E LP W G AR+L +Y ++ A ++ + G L A +RF Sbjct: 236 AETLPEGWPGDEARRLFARLYLNLSHPADLHAAQHFVAASGPLAASTGATEERF 289 >UniRef50_A5FUP1 Transcriptional regulator, PaaX family n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FUP1_ACICJ Length = 289 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 135/294 (45%), Gaps = 27/294 (9%) Query: 16 PVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRI 75 P SLI +L+GD+L RG I L ++ L E LG G +RTA+ RL +GWL SR Sbjct: 16 PSHTGSLIVTLFGDALLPRGSAIALATILDLFESLGIGPGVIRTAISRLAADGWLVASRR 75 Query: 76 GRRSFYSLSDKGLRLTRRAESKIY-RAEQPAWDGKWLLLLSEGLDKSTLADVKKQL---I 131 GR S+Y + RA IY R A + L G + + +L Sbjct: 76 GRSSYYRIGPSRRGEFIRAARHIYGRPRGTAARSLIIALPEPGPGREPARERFNRLGFAS 135 Query: 132 WQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWH 191 WQG ++ +P + L ++L EAG +++ P +L R A RA W Sbjct: 136 WQG-------ILLAPDRPLP--RSL--EAG---SIVLRATGGPESLRRLAARA-----WR 176 Query: 192 LTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELL 251 L Y+ F+ F L A P A +LLLIH YRR+VL+DP LP L Sbjct: 177 LDALCDHYKGFLAIFGGLT----ADAPAFDPRDALLARLLLIHDYRRIVLRDPRLPATFL 232 Query: 252 PAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLN 305 P WAG AR+LC +Y+ + A+ ++S G T G LP S RF L Sbjct: 233 PEEWAGDGARRLCAQLYEALLDASELWLSHNGATETGALPTADSTLRHRFADLR 286 >UniRef50_UPI0001B54B27 repressor in the phenylacetic acid catabolic pathway n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B54B27 Length = 296 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 123/267 (46%), Gaps = 18/267 (6%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 S SL+ ++ G+ + R +W L L L E+ R AL R EGWL RIGR Sbjct: 31 SARSLLMTVLGEYVLPRDRPVWTSILVESLRMLDIEEKSARQALARSAGEGWLVSERIGR 90 Query: 78 RSFYSLSDKGLRLTRRAESKIY---RAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIW 132 R +SL+ G RL +IY R +P W+ +WL+L+ + + ++ +L W Sbjct: 91 RVRWSLTPPGRRLLTEGAERIYAFGRDARP-WENRWLMLIVSVPEAKRDLRHRLRTRLTW 149 Query: 133 QGFGALAPSLMASPS-QKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWH 191 GFG+ + SP + + Q ++ E G+ + F ++ + ++ AR W Sbjct: 150 AGFGSPVAGVWVSPDPSREPEAQKIVAELGLEAQAMSFTSEYGAIGDQESMVAR---SWD 206 Query: 192 LTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELL 251 L+E YE FI F + P +A Q L+H +RR DP LP ELL Sbjct: 207 LSELTDRYEDFIDRFTGVSPSGDQA--------VLRAQTELVHEWRRFPFLDPQLPAELL 258 Query: 252 PAHWAGHTARQLCINIYQRVAPAALAF 278 PA W+G A +L + PAA A+ Sbjct: 259 PASWSGTKAAELFHRKHVEWRPAAQAY 285 >UniRef50_C7QFV2 Transcriptional regulator, PaaX family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QFV2_CATAD Length = 281 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 112/248 (45%), Gaps = 16/248 (6%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 S SL+ +L G+ + W ++ L G E+ R AL R + EGW+ R+ R Sbjct: 20 SARSLLMTLLGEYVLPHERPTWTSTIIEALSADGVEEKAARQALARTSAEGWITTERVSR 79 Query: 78 RSFYSLSDKGLRLTRRAESKIYR--AEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQ 133 R +SL+ +G +L +I+ PAWDG+WL+LL + + ++ +L W Sbjct: 80 RVRWSLTPEGRQLLTEGAERIFSFGRTTPAWDGRWLMLLVTVPETRRDLRHRLRTRLTWA 139 Query: 134 GFGALAPSLMASPSQKLAD-VQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GFG P + +P D + +L + + + F A S AA+ AR W L Sbjct: 140 GFGTADPGVWINPDPAREDEAREVLRDLDLDQGAMSFTAAHGSIGSLAAMVAR---AWDL 196 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 + A YE F+ +F L P A Q L+H +RR DP LP ELLP Sbjct: 197 STLEAEYEAFVSAFGALTPDTDAAT--------LRTQTRLVHEWRRFPFLDPRLPRELLP 248 Query: 253 AHWAGHTA 260 A W G A Sbjct: 249 ADWTGAKA 256 >UniRef50_A0NQP8 Putative regulator of phenylacetic acid degradation, ArsR family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NQP8_9RHOB Length = 285 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 126/282 (44%), Gaps = 26/282 (9%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 + ++ + + P LI ++YGD + RGG +W+G L +L G E VRTA+ Sbjct: 3 TDTESLTEGFLQPFPPKAAQLIVTIYGDIVEPRGGVLWMGDLISLCASFGVNESLVRTAV 62 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLL-LSEGLDK 120 RL +G L R GRRSFY+L+ A Y E D WLL +E D+ Sbjct: 63 SRLVSKGQLTGEREGRRSFYALTPDAREEYHLAADLFYGPEDT--DCGWLLTHCTEAADQ 120 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 + L+ GF +L ++ + + LL A +V +R Sbjct: 121 AI-------LMRFGFASLEGNVFIGADRP---GRPLLGTTFRATDVP----------NRG 160 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 L+ + L Y F+ F P+ L+ A L P A +L L+H YR + Sbjct: 161 DLKDIASSAFGLGSLACDYAEFVSRFGPMQDLV---ARGLLPRSALLFRLALVHAYRGIR 217 Query: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEK 282 L+DP LP +LP W+G+ AR L +Y+ ++P A ++++ Sbjct: 218 LRDPRLPRSVLPKDWSGYEARSLFAALYRNLSPGADGYIAQN 259 >UniRef50_A4X2T5 Transcriptional regulator, PaaX family n=9 Tax=Actinomycetales RepID=A4X2T5_SALTO Length = 272 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/262 (30%), Positives = 120/262 (45%), Gaps = 13/262 (4%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 S + LYGD L RGG + +L LL LG VRTA+ R+ ++GWL+ R+ Sbjct: 5 SALFDLYGDHLRPRGGRAQVAALVKLLAPLGIAPPAVRTAVSRMVRQGWLEPLRMATGPG 64 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKW-LLLLSEGLDKSTLADVKKQLIWQGFGALA 139 YS++ K R A ++IYR + WDG++ LL+++ + + L + G+G L Sbjct: 65 YSITPKAARRLDEAATRIYRTGKTGWDGRFDLLVVAAPAARRERQRLAANLSFLGYGMLD 124 Query: 140 PSLMASPSQKLADVQTLLHEAGVADN--VICFEAQIPLALSRAALRARVEECWHLTEQNA 197 + ++ DV LL EAGV A P A+ V W L E Sbjct: 125 ECTWVA-TRPGEDVDLLLDEAGVRYERFTAAHAAGTPGAMG------VVRRAWDLAEIGQ 177 Query: 198 MYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAG 257 YE F+ R L+ + + + E A+ + L+H +R + +DP LP LLP W G Sbjct: 178 AYEQFVAEQRALLAGVTVRSPD---EEAYAARFRLVHAWRTFLFRDPQLPPALLPERWPG 234 Query: 258 HTARQLCINIYQRVAPAALAFV 279 A R+ PAA +V Sbjct: 235 TAAGSFFDRHAARLRPAADRYV 256 >UniRef50_A9DGK3 Phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DGK3_9RHIZ Length = 296 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 134/290 (46%), Gaps = 22/290 (7%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 +S SLI S GD++S RGGE+ G++ AL+ LG G VRTA+ RL+ +GW++ +R G Sbjct: 24 LSAWSLIVSFLGDAISPRGGEVSAGAVQALMARLGIGHGAVRTAISRLSADGWIERTREG 83 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQ--PAWDGKWLLLLSEGLDKSTLADVKKQLIWQG 134 R SFY LS +RAE +IY P + L++ ++ D+ TL + + Sbjct: 84 RNSFYRLSPDVAETVQRAERRIYARTSCLPPECSRTLVIGADAFDQDTLNTL------EA 137 Query: 135 FGALA--PSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GAL P L + ++L A V F A A Sbjct: 138 LGALVLNPQLSLCFTAAATLPESLRPPATTLAGVSSF-----------APGADAIARIAA 186 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 Q A E ++ P VP + E+ E+ A ++ LLIH +RR+ L+ +P L+ Sbjct: 187 ARQRADLEALRTAYAP-VPGMLESQTEIAAGDAMALRCLLIHEWRRIALRVIAVPAGLVQ 245 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFG 302 A R L IY ++ PA+ A++ + T G LP P + RFG Sbjct: 246 ADDPEPETRALIARIYAQLLPASEAWLDDTAATPAGALPPPDEGFATRFG 295 >UniRef50_A3K7C6 Putative regulator of phenylacetic acid degradation, ArsR family protein n=1 Tax=Sagittula stellata E-37 RepID=A3K7C6_9RHOB Length = 269 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 124/287 (43%), Gaps = 28/287 (9%) Query: 25 SLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLS 84 ++YGD + RGG +W+G+L G E VRTA+ RL G L+ RIGR+S+Y LS Sbjct: 2 TIYGDVVEPRGGALWIGTLIECCGRHGLNETLVRTAVSRLVASGNLEGVRIGRKSYYHLS 61 Query: 85 DKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLMA 144 + R A ++ A D WLL L+ G G L P M Sbjct: 62 ESAREEFREAARLLFLPSPDARD--WLLSLT------------------GAGDLPPPWMR 101 Query: 145 -SPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFI 203 SP+ +A + + D V+ QI + LR+ E W L + YE F+ Sbjct: 102 LSPTVAIAPNR---DDVAPVDGVLMRAEQIG---AHGDLRSLAREKWALDDVARAYEAFL 155 Query: 204 QSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQL 263 + + L+ + L+PE A +L L+H YR LKDP LP P W AR+L Sbjct: 156 ERHQSLLD-GRGTVSSLSPEEALARRLRLVHDYRHAALKDPGLPRGACPTDWPAERARRL 214 Query: 264 CINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEA 310 + +Y ++ A FV E G L + +R L E A Sbjct: 215 FVTVYLGLSAMADEFVGETFLNDNGALSSRTDETERRLARLESEAAA 261 >UniRef50_A1BBH9 PaaX domain protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BBH9_PARDP Length = 284 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 131/285 (45%), Gaps = 29/285 (10%) Query: 7 FIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNK 66 I + + + + I ++YGD + RGG +W G+L + E +G E VRTA+ RL Sbjct: 11 LIDGILEGMALRSAAFIVTVYGDVVVPRGGVLWTGTLIEVCERVGISESLVRTAVSRLVA 70 Query: 67 EGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADV 126 L R+GRRS+Y L R +A +Y+ E PA W +L + L Sbjct: 71 AHRLRGERLGRRSYYRLDASAQREFDQAARLLYKPEVPAR--GWQILHAPDL-------T 121 Query: 127 KKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARV 186 + + Q G + ++ P + V + + F A P L R+ Sbjct: 122 EDEARHQRMGHMGGAVFIRPDRGQP----------VPEGALPFLASDPPEL------GRI 165 Query: 187 EECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLL 246 + W L+ + Y + F PL EA L+ E A +LLL+H YR V+L+DP L Sbjct: 166 GQFWDLSALHQRYLDMLVRFAPLA----EAGAALSDEMALIARLLLVHDYRGVLLRDPRL 221 Query: 247 PEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELP 291 P+ LP W GH AR L +Y++++PAA ++ E S G LP Sbjct: 222 PQPALPPDWQGHEARALFRRLYRQLSPAAERWIGTHFEGSGGFLP 266 >UniRef50_Q2HR06 Phenyl acetic acid responsive transcriptional repressor n=1 Tax=Streptomyces sp. SCC 2136 RepID=Q2HR06_9ACTO Length = 262 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 119/256 (46%), Gaps = 17/256 (6%) Query: 25 SLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLS 84 S GD + R ++ GS+ + G GE R+ L R+ L R GRR ++ L+ Sbjct: 3 SFLGDQVLGRDVCVYSGSVIDVFGRAGVGEHATRSTLTRMVGRDLLRRQREGRRMYFGLT 62 Query: 85 DKGLRLTRRAESKIYR--AEQPAWDGKWLLL---LSEGLDKSTLADVKKQLIWQGFGALA 139 ++ + R E +I+ A WDG W LL L E + D++ QL W GFG L Sbjct: 63 ERSESVLRDGEQRIWEDGAVNRQWDGSWTLLGFSLPESWQRQR-HDLRAQLAWSGFGPLF 121 Query: 140 PSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMY 199 L +P + ADV ++ E G++ +V F A + A+ +EE W L E Y Sbjct: 122 GGLWIAPGE--ADVSAIVAELGLSAHVKIFRAHADAGMDIGAM---IEETWALGELATRY 176 Query: 200 ETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHT 259 E F ++ + AADE A ++L L + +VV +DP LP + LP +W Sbjct: 177 EAFTHRWQRW-ETTEPAADE-----ALALRLRLSTEWLQVVRRDPRLPVKHLPDNWPAEQ 230 Query: 260 ARQLCINIYQRVAPAA 275 A + +Y R+ P A Sbjct: 231 AEKTFRTVYARLTPLA 246 >UniRef50_B9QZJ2 PaaX-like protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QZJ2_9RHOB Length = 314 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 122/267 (45%), Gaps = 28/267 (10%) Query: 14 AVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVS 73 + P LI ++YGD + RGG +W+G L L G E VRTA+ RL G L+ + Sbjct: 46 SYPPKAGPLIVTIYGDIVEPRGGTLWMGDLITLCGQFGVNESLVRTAVSRLVARGQLEGA 105 Query: 74 RIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLS-EGLDKSTLADVKKQLIW 132 R GRRS+Y L+D + A +I+ P D L ++ + D LAD Sbjct: 106 RNGRRSYYRLTDAAGIEFQSASEQIF--GPPDSDCDLLFIVQPDRTDHQGLAD------- 156 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 QGFGA++ +L AD + + CF+A P S + + + + L Sbjct: 157 QGFGAVSETLFVG-----ADRPSRITSGA------CFKA-CPDQRSEKEVAEMLNKVFGL 204 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 + A Y +F + L + +T I+L ++H +R + LKDP LP +LP Sbjct: 205 DQLAARYRSFYKRIEALDCFGLSGLETVT------IRLAMVHEFRAIRLKDPRLPPSVLP 258 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFV 279 W G +AR+L Y ++ A F+ Sbjct: 259 VDWDGLSARRLFAEKYLELSETADPFI 285 >UniRef50_C1XSN8 Phenylacetic acid-responsive transcriptional repressor n=2 Tax=Meiothermus RepID=C1XSN8_9DEIN Length = 259 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 121/250 (48%), Gaps = 16/250 (6%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 S + +LY + L + G W+G L +E LGF E VR A+ R K GW+ + GR+++ Sbjct: 5 STLFTLYMEYL-YPGNRAWVGDLIRWMEALGFSEPAVRAAVSRSVKSGWIIPEKDGRKAY 63 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD-KSTLAD-VKKQLIWQGFGAL 138 Y LSD+ + ++Y+ WDG+W +L+ + K T+ D + +L+ GFG Sbjct: 64 YRLSDRVAWQVEQVRDRLYQ-NVGQWDGQWRILIYAVPEAKRTVRDRFRNELVLLGFGTP 122 Query: 139 APSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAM 198 +P + SP+ L + L+ G+ V F+AQ A + L V + ++L Sbjct: 123 SPGVWVSPTASLEAARDLVRFYGLGGYVELFQAQRFTAGNPLEL---VRKAYNLDAAQQR 179 Query: 199 YETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGH 258 Y F++ P P TPE AF L+H R+++ DP LP EL P + G Sbjct: 180 YREFVR-LHPFNP--------KTPEEAFVRLTRLVHEARKLLFLDPGLPPELTPPGFLGP 230 Query: 259 TARQLCINIY 268 A Q + ++ Sbjct: 231 EAHQRFLELH 240 >UniRef50_A3JQN4 Phenylacetic acid degradation operon negative regulatory protein paaX n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JQN4_9RHOB Length = 268 Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 116/251 (46%), Gaps = 32/251 (12%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 SL+ ++ GD ++ RGG I + L A+ E LG VRTA+ RL+KEGW+ R GR SF Sbjct: 22 SLVMTIMGDVVAPRGGVISMADLLAITEMLGIENGAVRTAMSRLSKEGWVKGQRQGRVSF 81 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADV--KKQLIWQGFGAL 138 Y L KGL A +IY E P D W++ + T DV + L+ + A+ Sbjct: 82 YELGPKGLADYAPATQRIYALEPPYADSSWIIAI-----LPTACDVAGPRPLLRRSTMAV 136 Query: 139 APSLMASPSQKLADVQTLLHEAGVADNVICFEAQIP-LALSRAALRARVEECWHLTEQNA 197 + A Q LAD ++ AG+ +P LS A + ++E ++T + Sbjct: 137 WLAENAPTEQALADTDAMVFRAGL--------KTLPDWVLSEAGVGTFIDELNNITNKYT 188 Query: 198 MYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAG 257 E L+PE A ++LLIH +RR+ L+ P LP + P A Sbjct: 189 RLEHV----------------SLSPEEALLTRILLIHDWRRLALRHPNLPVDFEPYFVAA 232 Query: 258 HTARQLCINIY 268 AR +IY Sbjct: 233 GAARAKIGSIY 243 >UniRef50_A4FEE0 Repressor in the phenylacetic acid catabolism n=4 Tax=Actinomycetales RepID=A4FEE0_SACEN Length = 288 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 122/265 (46%), Gaps = 12/265 (4%) Query: 22 LISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFY 81 LI ++YG GG + + +L LL LG E VR+++ RL + G L SR G + Y Sbjct: 26 LIVTVYGLYARESGGWLSVAALVRLLGDLGVDEPAVRSSISRLKRRGILVASRQGGAAGY 85 Query: 82 SLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLL-----SEGLDKSTLADVKKQLIWQGFG 136 LS++ L + R + +I+ E+ WLL + S+ + L + QL GFG Sbjct: 86 VLSEQALEILREGDERIFSQERATAADGWLLAVFSVPESQRQKRHVL---RTQLTRLGFG 142 Query: 137 ALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQN 196 +AP + +P+ A + L + F + ++ LR +V + W L + Sbjct: 143 TVAPGVWIAPAHLHAAATSALRRFELDSYAELFRSD---HVAFGDLREKVAQWWDLEQLQ 199 Query: 197 AMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWA 256 +Y F+ P++ + E AF + ++ +RR+ DP LP +LLPA W Sbjct: 200 ELYGRFVGVHEPVLRRWQRRRSRRERE-AFLDYVRVLTDWRRLPYLDPGLPADLLPAEWN 258 Query: 257 GHTARQLCINIYQRVAPAALAFVSE 281 G A +L ++ + A A+V E Sbjct: 259 GAVAAELFFSLRASLQEQAHAYVDE 283 >UniRef50_UPI0001C31D78 transcriptional regulator, PaaX family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D78 Length = 289 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 116/262 (44%), Gaps = 18/262 (6%) Query: 22 LISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFY 81 L+ +L G + R +W G L ALLE +GF R AL RL + + R GR Y Sbjct: 26 LVMTLLGSYVRSRHETVWSGGLVALLEEMGFSTGASRVALTRLVRRDLIARERSGRLIHY 85 Query: 82 SLSDKGLRLTRRAESKIY---RAEQPAWDGKWLLLL-----SEGLDKSTLADVKKQLIWQ 133 ++++ ++ + +I+ RA+ A G W +L ++ L++ LA ++L + Sbjct: 86 RITERADQVLAEGDRRIFSLGRADTLA--GGWTMLWHDIPEAQRLERGRLA---RRLRFL 140 Query: 134 GFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLT 193 GFG L L SP + +V LL E GVA+ + AAL V W L Sbjct: 141 GFGTLQDGLWISPHDREQEVVPLLEELGVAERAGVLVGDVAAMPGTAAL---VRRAWDLD 197 Query: 194 EQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPA 253 Y F F P + A + AF ++ ++H +R DP LP+EL+P Sbjct: 198 ALCERYRAFAVQFAPHA--RRRGAPRVDDREAFLVRTRIVHLFRGFPFLDPDLPDELMPD 255 Query: 254 HWAGHTARQLCINIYQRVAPAA 275 A A + Y+R+A A Sbjct: 256 PRARRRAVDVFDAAYERLAEPA 277 >UniRef50_C7MUF0 Phenylacetic acid-responsive transcriptional repressor n=5 Tax=Actinomycetales RepID=C7MUF0_SACVD Length = 292 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 78/277 (28%), Positives = 127/277 (45%), Gaps = 18/277 (6%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 +L+ + +G + RG ++ S+ +L LG E R+ L R+ + G L +R GR + Sbjct: 24 TLLLTFFGGYVLRRGVQVATASVLDVLRRLGVSEHATRSTLSRMARRGLLYRTRRGRNVY 83 Query: 81 YSLSDKGLRLTRRAESKIYR--AEQPAWDGKWLLL---LSEGLDKSTLADVKKQLIWQGF 135 L+ + + E +I+ A WDG W LL L E + ++ +L+W GF Sbjct: 84 LGLTPRLREILHDGEYRIWHMGAVNTQWDGTWTLLGFSLPESWQRQRHV-LRSRLLWAGF 142 Query: 136 GALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQ 195 G+L L +PS D +L+ A++V F+A+ AL + V W L Sbjct: 143 GSLQGGLWIAPSP--VDTDAVLNGLEAAEHVKVFQAR---ALPPTDVSELVRNTWDLAAV 197 Query: 196 NAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHW 255 A Y F+ + P L A + + QLLL + + + +DP LP+E LP W Sbjct: 198 AAHYRRFLHRWSG--PTLPAAQTD-----SLGRQLLLETEWLQTIRQDPRLPKEHLPHDW 250 Query: 256 AGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPA 292 A+QL ++ + PAA A +E +T E+ A Sbjct: 251 PAVRAQQLFHLLHAELDPAARATAAEVLDTIPDEVGA 287 >UniRef50_C8X827 Transcriptional regulator, PaaX family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X827_NAKMY Length = 276 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 115/271 (42%), Gaps = 22/271 (8%) Query: 16 PVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRI 75 P S +S+I S G L GG I + L L G E VR AL RL G+LD R+ Sbjct: 15 PGSPSSVIVSFAGSFLREIGGAIAVSDLIRCLAAAGVAEPAVRQALSRLKARGFLDPDRV 74 Query: 76 GRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLL-----SEGLDKSTLADVKKQL 130 R+ Y L+ GL + +I+ + W+L + SE + L + +L Sbjct: 75 DGRAGYRLTAAGLADLNSGDRRIFHRPSTSEADGWVLAVFSVPESERAQRHRL---RSEL 131 Query: 131 IWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQ--IPLALSRAALRARVEE 188 W GFG +A + A+P + +L A + V F+A P+ +V + Sbjct: 132 SWLGFGTVAAGVWAAPRHLAEPTRQVLAAADLDHYVTWFQAHHLSPI---------QVGQ 182 Query: 189 CWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPE 248 W L YE F++ + + E ELT E+AF L +I +R DP LP Sbjct: 183 WWDLPALRDQYEQFLRQHSSDLAVPDE---ELTDEQAFAHYLRVIDSWRVFPRIDPGLPA 239 Query: 249 ELLPAHWAGHTARQLCINIYQRVAPAALAFV 279 LLP W A +++ R A LA V Sbjct: 240 TLLPPDWPAAQAWSTFASLHDRWAQRGLAHV 270 >UniRef50_UPI0001B5864E repressor in the phenylacetic acid catabolism n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B5864E Length = 271 Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 118/263 (44%), Gaps = 24/263 (9%) Query: 22 LISSLYGDSLSHR-GGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 L+ +L G + R +W G L ALL LGF + R AL RL + G L R GR Sbjct: 13 LVMTLLGSYVRPRESRRVWSGGLVALLHELGFSDGAARIALTRLVRRGLLSRHREGRLVH 72 Query: 81 YSLSDKGLRLTRRAESKIY---RAEQPAWDGKWLLL---LSEGLDKSTLADVKKQLIWQG 134 YSL+ + + L + +I+ R ++PA G W +L + E KS V++ L + G Sbjct: 73 YSLTSRTVALLDDGDRRIFGLGRRDEPA--GTWTVLWQNIPETRRKSRERLVRR-LRFLG 129 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRAR--VEECWHL 192 FG + +P + A+V LL E VA+ A + L AAL R W L Sbjct: 130 FGPVQDGTWLAPHDREAEVLALLSELEVAEY-----AGLMLGTPSAALDVRRLAGRAWDL 184 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 +A Y F+ F L AF ++ L+H YR DP LP EL+P Sbjct: 185 DGLSARYAAFVAEF-------GGTPRGLGDPEAFAVRTRLVHTYREFPSLDPELPSELIP 237 Query: 253 AHWAGHTARQLCINIYQRVAPAA 275 A A +L ++Y +AP A Sbjct: 238 APGTRAAAVKLFHDLYSALAPPA 260 >UniRef50_C4DKB7 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DKB7_9ACTO Length = 260 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 15/248 (6%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 S SLI +++G GG + + L +L L + VR A+ RL + G L+ S++ Sbjct: 4 SPRSLIVTVFGLYAREAGGTLPVSGLVRVLATLSVDTQAVRAAVSRLKRRGMLEPSKVDG 63 Query: 78 RSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGF 135 + Y+L+ G RL +++I+ + W+L + + ++ ++ +L W GF Sbjct: 64 AAGYALTGSGRRLLAEGDARIFHPPRAELSDGWVLCVFSVPETMRAKRHVLRGKLTWLGF 123 Query: 136 GALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQ 195 G AP + +P+ + + +L +A V F + A + + W L Sbjct: 124 GQAAPGVWIAPAHTMDAARAMLAANDLAGYVNLFRSDY---CGDAPVAEAARQWWDLPRL 180 Query: 196 NAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHW 255 AMY FI + R AD+ P + + +R++ DP LP ELLPA W Sbjct: 181 EAMYREFIDALRG-----DPGADQALPA-----WIRAVTDWRKLPFLDPGLPRELLPADW 230 Query: 256 AGHTARQL 263 GH A L Sbjct: 231 PGHDAVTL 238 >UniRef50_A8LCV5 Transcriptional regulator, PaaX family n=1 Tax=Frankia sp. EAN1pec RepID=A8LCV5_FRASN Length = 333 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 120/265 (45%), Gaps = 12/265 (4%) Query: 22 LISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFY 81 L+++L GD + R + L +LL R AL RL++ G L+ SRIGR ++Y Sbjct: 56 LLTTLLGDYWAGRREHVPSVVLVSLLADFDVSTVGARAALSRLSRRGLLESSRIGRNTYY 115 Query: 82 SLSDKGLRLTRRAESKIYR--AEQPAWDGKWLL-LLSEGLDKSTLAD-VKKQLIWQGFGA 137 L+ + + ++I+ WDG+W + S D+ + V+ +L W GF Sbjct: 116 GLTAEASAAILASANRIFTFGLRHDPWDGRWTVAAFSIPEDQRDVRHAVRARLRWLGFAP 175 Query: 138 LAPSLMASPSQKLADVQTLLHEAGV-ADNVICFEAQIPLALSRAALRARVEECWHLTEQN 196 L + +P + + E GV A V+ ++ + R + A W LTE Sbjct: 176 LYDGMWVTPRSAGEAARRVFAELGVIASTVLITTSEARRSDPRPPMAA-----WDLTELQ 230 Query: 197 AMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWA 256 YE F++++ PL+ ++ E+ A + ++ + R DP LP +LLP W Sbjct: 231 RTYEEFVRTYTPLLERVRHG--EVCGAEALAARTAVMESWGRFPSLDPDLPIDLLPGRWP 288 Query: 257 GHTARQLCINIYQRVAPAALAFVSE 281 AR + IY +A A+A V E Sbjct: 289 RREARTVFAEIYDGLAVPAVARVRE 313 >UniRef50_Q0SFS4 Transcriptional repressor for phenylacetic acid degradation n=4 Tax=Actinobacteria (class) RepID=Q0SFS4_RHOSR Length = 287 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 23/274 (8%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 LD F ++ P S TSLI ++ G + GG + + L++ +G R A+ R Sbjct: 12 LDDF-----DSRPGSATSLIRTVLGAYVRDLGGWVAIADFVELMQAVGIPSESTRIAVAR 66 Query: 64 LNKEGWL-DVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKST 122 L K+G L ++R GR S Y ++++ + RR + +I+ Q + W L+ S + +S Sbjct: 67 LKKKGVLRPLTRDGR-SGYEVTEQAEAMFRRGDPRIFGFRQMSETDPWRLI-SFTIPESQ 124 Query: 123 LA---DVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQ---IPLA 176 A ++++L W G G ++P L +P +VQ ++ G+++ V F + +P + Sbjct: 125 RAVRHQLRRRLGWIGCGTVSPGLWIAPEYLAREVQDIVDALGLSEYVTTFVSTSVFVPDS 184 Query: 177 LSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFY 236 + AA R W L A + F+ R + AA+E++P AF + L+ + Sbjct: 185 MGDAATR-----WWDLDGIAARHRDFLDRHR----VALSAAEEVSPREAFVRFVPLLDEW 235 Query: 237 RRVVLKDPLLPEELLPAHWAGHTARQLCINIYQR 270 R + DP LP +LP W G + +L + R Sbjct: 236 RIIPYIDPGLPAGMLPEDWPGADSVRLFASARDR 269 >UniRef50_C1RIS8 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RIS8_9CELL Length = 318 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 118/266 (44%), Gaps = 14/266 (5%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 S SL+ +L GD + + +L LL G + R AL R+ K G + +R GR Sbjct: 16 SPPSLLITLLGDYWWGQTDPLPSAALVDLLADFGVSDVAARAALSRMVKHGLVVSARSGR 75 Query: 78 RSFYSLSDKGLRLTRRAESKIYR---AEQPAWDGKWLLL---LSEGLDKSTLADVKKQLI 131 R+FY+++ + + R +I R + WDG+W L+ + E +++ ++ +L Sbjct: 76 RTFYAMTPRAQGIMRAGAERIVRFGVDDGTGWDGRWSLVAFSVPEA-NRAAREALRTRLR 134 Query: 132 WQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWH 191 W GF L +L SP + + L GV F A A E W Sbjct: 135 WLGFAPLYDALWISPHPRHDEALAELGALGVT-RATAFVATC---PPLPAAALAPESAWD 190 Query: 192 LTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELL 251 L Y TF+ ++ P L + A ++P A + L+ +R DP LP LL Sbjct: 191 LDGLAERYRTFVTTWEPTHAALSKGA--ISPVDALVKRTELMDAWRAFPGVDPDLPRRLL 248 Query: 252 PAHWAGHTARQLCINIYQRV-APAAL 276 PA W AR L + Y+++ APA++ Sbjct: 249 PADWPRDRARDLFLETYEQLGAPASV 274 >UniRef50_Q72HH2 PhaN n=3 Tax=Thermus RepID=Q72HH2_THET2 Length = 260 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 113/238 (47%), Gaps = 19/238 (7%) Query: 42 SLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRA 101 L A++ LGF E VR AL R K GW+ R GR ++Y+LSD+ R+ ++Y Sbjct: 25 DLVAMMAALGFSEMAVRAALSRSAKRGWVVPKREGRAAYYALSDRVYWQVRQVRRRLY-G 83 Query: 102 EQPAWDGKWLLLLSEG-LDKSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEA 160 P WDG++LL+L EG D+ ++++ G+G L + L + LL Sbjct: 84 SLPPWDGRFLLVLPEGPKDRGERERFRREMALLGYGGLQSGVYLGVGADLEATRELLGFY 143 Query: 161 GVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADEL 220 G+ + CF+ ++ L LRA + L E A Y L LL ++ ++ Sbjct: 144 GL--SATCFQGEL-LGGKEEVLRA-----FPLEEAKAGYGR-------LSALLGQSPED- 187 Query: 221 TPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAF 278 P AF L+H R+++ DP LP+ELL + G R+L ++ + + A F Sbjct: 188 -PVEAFRHLTRLVHEARKLLFLDPGLPQELLGPDFPGPKVRRLFLSAREELRARAAPF 244 >UniRef50_UPI0001B55AC7 probable phenylacetic acid degradation operon negative regulatory protein n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B55AC7 Length = 280 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 116/270 (42%), Gaps = 25/270 (9%) Query: 22 LISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFY 81 L+ S++G L R +W G L LLE G R L R+ G + R GR Y Sbjct: 17 LLFSMFGAYLQPRTAPMWSGGLVVLLEKFGVTTATGRITLNRMVHRGLAERHRRGRAISY 76 Query: 82 SLSDKGLRLTRRAESKIYRAEQPAWDG---KWLLLLSEGLD--KSTLADVKKQLIWQGFG 136 +LS + L L ++++ A A D W ++ D K+ ++ KQL + GFG Sbjct: 77 TLSPRALHLLEDGDNRL--ATLAAVDDTPKTWTVVWHNLGDNRKADRSNFVKQLRFHGFG 134 Query: 137 ALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQN 196 L ++ ASP L +V+ G++D V F+ ++ AAL + W L + Sbjct: 135 QLQEAVWASPKDYLREVKDYAKLLGISDEVAIFQCRLDEETVPAAL---LSHLWQLDDLA 191 Query: 197 AMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWA 256 YE F + L + E TPE AF ++H +R DP LP W Sbjct: 192 GHYERFAGRYAALA-----SEPEATPEEAFLACTTMLHTFRSFANLDPELPPL-----WT 241 Query: 257 GHT-ARQLCINIYQR----VAPAALAFVSE 281 H AR + +Y+ + P A A+ +E Sbjct: 242 PHAGARAKALTVYREALDALRPRAAAYFTE 271 >UniRef50_A1RBT3 Putative transcriptional regulator, PaaX-like protein family n=1 Tax=Arthrobacter aurescens TC1 RepID=A1RBT3_ARTAT Length = 294 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/275 (23%), Positives = 129/275 (46%), Gaps = 22/275 (8%) Query: 11 AVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWL 70 AV A PV L+ +++G + G + + +L ++L LG+ VR+++ RL +G L Sbjct: 3 AVPAPPVRHQQLLVTIFGLYGRNAGDALPVSALISMLGSLGYDAPGVRSSVSRLKSKGVL 62 Query: 71 DVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLL---LSEGLDKSTLADVK 127 R G + Y +S+ + R + +I+ EQPA W+L + E + ++ ++ Sbjct: 63 KSVREGGIAKYKISESVSDVFREGDRRIFAPEQPAPVDTWVLAVFSVPESM-RNRRHQLR 121 Query: 128 KQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVE 187 L+ GFG++A + +P+ KL + L + + + V F + + +R ++ Sbjct: 122 SALLGLGFGSVANGVWIAPAHKLEQARERLTASDLIEFVDLFRSDY---VFDGPMRPKIS 178 Query: 188 ECWHLTEQNAMYETFIQSF-------------RPLVPLLKEAADELTPERAFHIQLLLIH 234 E W L E + + F++ + P V + E+ +EL + AF + ++ Sbjct: 179 EWWDLKELDDQFTEFLELYDGAEQQWAERVGDDPEV-AVAESTEELRRD-AFRYYIPMLT 236 Query: 235 FYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQ 269 +R+ +DP LP + LP W G R+ +++ Sbjct: 237 MWRKFPYRDPNLPADYLPPEWHGPAVRRTFQAVHR 271 >UniRef50_B1N6G0 Putative phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=uncultured bacterium CBNPD1 BAC clone 67 RepID=B1N6G0_9BACT Length = 256 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 109/263 (41%), Gaps = 26/263 (9%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 + L I VP SLI S++G + G + L L L L VRTAL Sbjct: 5 AALSALIAAHHGRVPPRTGSLIVSVFGALVLPAGEALRLSDLQEWLAALEIEPGLVRTAL 64 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS 121 RL +G L R G+ + Y LS + L+ A I+ P G LL+ E D Sbjct: 65 SRLVNDGTLLRERDGKAALYRLSARALKDFEAAGDLIFGRLLPRPTGDLDLLVIE--DTG 122 Query: 122 TLADVKKQLIWQGFGALAPSLM---ASPSQKLADVQTLLHEAGVADNVICFEAQIPLALS 178 A ++ +L+ GF LA +L+ A + +V+ L + A LAL Sbjct: 123 RRATLRAELVAMGFVPLAANLLIRSAWAGRAAPEVRGCL--------ALSLHANADLAL- 173 Query: 179 RAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRR 238 R E W L + Y I + TP A +L+L+H +RR Sbjct: 174 ------RARELWPLEQLAGGYRAVIAHAEAV------QGGAFTPSEARLARLMLVHEFRR 221 Query: 239 VVLKDPLLPEELLPAHWAGHTAR 261 +VL+DP LPE +LP W G AR Sbjct: 222 IVLRDPFLPEAVLPRDWPGSPAR 244 >UniRef50_A8LTJ1 Transcriptional regulator PaaX n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LTJ1_DINSH Length = 264 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 112/253 (44%), Gaps = 33/253 (13%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 S + S++GD I L + +G +R AL RL K+GW+D +R GR S Sbjct: 23 SFLISVFGDLAQAPDARISAALLRQISAQIGIRPEAMRVALHRLRKDGWIDSARAGRTSA 82 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAP 140 Y L+D+G + A +IY P + WL + G A + +W L+ Sbjct: 83 YFLTDRGRAQSAAASPRIY-GTGPGAETAWLAAFNPGQPG---AHQDEAGVW-----LSA 133 Query: 141 SLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA---LRARVEECWHLTEQNA 197 +L+ S ++ AD + PL A + AR+ C T Q Sbjct: 134 TLLVSATRP-----------ATADAFVT-----PLGPGTALPDWMTARI--CDATTVQ-- 173 Query: 198 MYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAG 257 M F ++ L PLL ++A LT +++LL+H +RR+VL+ P+LP+ L PA W G Sbjct: 174 MAADFARALAGLRPLL-DSAPGLTTLETTALRVLLVHGWRRIVLRTPILPDHLFPATWQG 232 Query: 258 HTARQLCINIYQR 270 R ++ R Sbjct: 233 PVCRDGVADLLAR 245 >UniRef50_B9NQI2 PaaX domain protein n=2 Tax=Rhodobacteraceae RepID=B9NQI2_9RHOB Length = 266 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 21/247 (8%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 S+I SL+GD G I G+L ++E +G +R AL RL K+GW++ R+GR S Sbjct: 25 SVIVSLFGDMAQAPGTRISGGTLTRIIEPIGIKPEAIRVALHRLRKDGWIESDRMGRVSR 84 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAP 140 + L++ G + +IY A P W LL++E + L D+ + G Sbjct: 85 HVLTEFGRAQSAAVTPRIY-ARTPVMAEHWHLLIAEDGNTQVLEDIMLSHDYIPIGRNVA 143 Query: 141 SLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYE 200 +P+ AG A + LA+S +++ E A + Sbjct: 144 LGSGTPTD----------HAG---------ALLVLAISPQTAPTWLQDRLCPQELRASCQ 184 Query: 201 TFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTA 260 T + + R V + TP ++ ++ LL+H +RRVVL+ P LP P WAG Sbjct: 185 TLLAATR-RVARSRPDGWTPTPLQSATLRTLLVHRWRRVVLRQPDLPPAFYPPDWAGPAC 243 Query: 261 RQLCINI 267 R+ + + Sbjct: 244 RESVMQL 250 >UniRef50_A4V8M5 Putative transcriptional regulator n=2 Tax=Arthrobacter nitroguajacolicus RepID=A4V8M5_9MICC Length = 288 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 73/267 (27%), Positives = 122/267 (45%), Gaps = 13/267 (4%) Query: 22 LISSLYG-DSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 LI ++YG S +H GG + L LL LG VR+++ RL K G L R G + Sbjct: 17 LIVTVYGLYSRTHDGG-FAVSDLIRLLGDLGVESAGVRSSVSRLKKRGVLSSFRQGGVAA 75 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLL---LSEGLDKSTLADVKKQLIWQGFGA 137 Y L+ + R + +I+ + W+L+ + E + ++ L G G Sbjct: 76 YKLAQGLEDVFRAGDERIFARRRAKKGDDWILVSFSVPEA-HRHLRHKLRTILTRIGCGQ 134 Query: 138 LAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNA 197 ++P L +P +V L AG+ + V F+A L+ +RA+V + W L A Sbjct: 135 VSPGLWIAPGNLSDEVSQQLDRAGLMEYVDLFKAA---PLTDDQIRAKVGQWWDLASLEA 191 Query: 198 MYETFIQSFRPLVP---LLKEAADELTPER-AFHIQLLLIHFYRRVVLKDPLLPEELLPA 253 +Y FI+ + ++ + D+ E+ AF + ++ +RR+ DP LP E LP Sbjct: 192 LYNEFIERYEAVLERWLTVDVTTDQSIQEKLAFSDYVPMVTQWRRLPYLDPGLPSEYLPE 251 Query: 254 HWAGHTARQLCINIYQRVAPAALAFVS 280 W+G A L ++ +AP A + S Sbjct: 252 GWSGLAAETLFAELHAALAPMAEKYAS 278 >UniRef50_Q0RIQ5 Putative repressor n=1 Tax=Frankia alni ACN14a RepID=Q0RIQ5_FRAAA Length = 270 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 95/217 (43%), Gaps = 16/217 (7%) Query: 58 RTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQ----PAWDGKWLLL 113 R L RL +G L+ R GR++ Y L G ++ S R E WDG W ++ Sbjct: 41 RVGLSRLCADGSLERRRDGRQTSYRL---GRQMAETVTSVGGRVESFGRSVGWDGSWTIV 97 Query: 114 LSEGLD--KSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEA 171 L+ D +ST +K L + GFG L + + +V+ L+ +A V F Sbjct: 98 LASVPDELRSTRRRMKSALAYLGFGRLRETTWVAARACEDEVKDLVESLDLAGLVDVFVG 157 Query: 172 QIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLL 231 + P AL A + A + CW L Y F+ F PL + D LT A + Sbjct: 158 R-PSAL--ADVDAILHRCWDLGSLTQRYSAFVARFAPLCTAVSR--DALTGPDALLWWMR 212 Query: 232 LIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIY 268 L H YR +V +DP LP E LPA R+ ++ Y Sbjct: 213 LTHDYRELVYRDPELPPEFLPAD--ARALRERVVDTY 247 >UniRef50_UPI0000510548 transcriptional regulator, PaaX family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510548 Length = 271 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 19/221 (8%) Query: 42 SLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRA 101 S+ ++ LG GE R+ L R+ + ++ + GR++FY+LSD+G + R + K++ Sbjct: 28 SIVFVMGRLGVGESAARSVLQRMAAKNFIVRHKEGRKTFYTLSDRGRAILREGQEKMFAG 87 Query: 102 EQPA-WDGKWLLL-LSEGLDKSTL-ADVKKQLIWQGFGALAPSLMASPSQKLADVQTLL- 157 QP WDG+W + + K TL + +L W GF + +P DV T+L Sbjct: 88 WQPQDWDGRWTFVRIQVPESKRTLRHQMASRLSWAGFAQVDGGPWVAPGPH--DVATILG 145 Query: 158 -HEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEA 216 ++ ++ V+ E + P + A + L E A YE+F + +R + P Sbjct: 146 PEQSVISPIVVYGEPKPPTSEEMLA------GAFDLAELAADYESFGEKWRAVDP----- 194 Query: 217 ADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAG 257 D L+P A ++ L + + DP LP LLP W G Sbjct: 195 -DSLSPVDALVKRVELHLDWLALARTDPQLPATLLPKGWPG 234 >UniRef50_C6D2L6 Putative transcriptional regulator, PaaX family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D2L6_PAESJ Length = 276 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 16/222 (7%) Query: 43 LAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAE 102 L + E G + VR AL RL KEG+ + + R L +K +R+ A+ +Y E Sbjct: 30 LIEVYEARGISHQIVRNALSRLKKEGYAESAERSRYKATPLGEKFIRIIN-AKPGLYEKE 88 Query: 103 QPAWDGKWLLLLSE--GLDKSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEA 160 WDG+W +++ E ++ + +L+ GFG+L S+ SP +V L + Sbjct: 89 ---WDGQWCMVMFEIPESERRRRDSFRSELLQLGFGSLYKSVYVSPWDYRDEVIRLGRQC 145 Query: 161 GVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMY---ETFIQSFRPLVPLLK--E 215 VA + +I + + W L E A+Y + ++Q LVP+LK E Sbjct: 146 EVAGYITVASTRI---VHNGITQEHCFRLWPLKELQALYRDKDRWLQEH--LVPVLKGLE 200 Query: 216 AADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAG 257 + + F + L L + L+DP+LP+ LLP W G Sbjct: 201 HTGDEDGLQLFVLFLELGEIIAELGLRDPMLPDPLLPDDWTG 242 >UniRef50_Q2HWJ0 Putative transcriptional regulator n=1 Tax=Nocardioides aromaticivorans RepID=Q2HWJ0_9ACTO Length = 266 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 17/220 (7%) Query: 46 LLEGLGFGERFVRTALFRLNKEGWLDV-SRIGRRSFYSLSDKGLRLTRRAESKIYRAEQP 104 L+ +G +RTA+FRL + GWL+ +R G R Y+L+D L + I+ A QP Sbjct: 32 LMTQVGVDAASLRTAVFRLKERGWLESQTRHGARG-YALTDHALATLTAGDEVIWHARQP 90 Query: 105 A-WDGKWLLL---LSEGLDKSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEA 160 A W ++ + E + +S ++ L GFG + ++ +P++ + + E Sbjct: 91 ADLHAGWCIINFSVPESI-RSKRYQLRSHLSALGFGNIGTAMWIAPARMRGAAEQAVAEL 149 Query: 161 GVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADEL 220 G+ + F + L + E W L + Y FI + + P + Sbjct: 150 GLDKHAAIFVGDY---VGTQDLTGLLYESWDLAGIDRSYREFIDEYADIAPPSE------ 200 Query: 221 TPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTA 260 P AF L L+ +RR+ +DP LP E+L + W+ A Sbjct: 201 -PRPAFATYLGLVDHWRRLPFRDPGLPREVLGSDWSAPEA 239 >UniRef50_UPI000050F8F1 PaaX family transcriptional regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F8F1 Length = 275 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 112/272 (41%), Gaps = 15/272 (5%) Query: 22 LISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFY 81 ++ + G L GG I + +L LL G R+A+ RL +G L + + Y Sbjct: 1 MLRTFVGLHLRDLGGWIRVAALLDLLATAGVSNSSTRSAVSRLKGKGLLIPDKREAVAGY 60 Query: 82 SLSDKGLRLTRRAESKIYRAEQPAWDGKWLLL---LSEGLDKSTLADVKKQLIWQGFGAL 138 L + R + +I+ D W L+ L E +D+S +++ L+ GFGA+ Sbjct: 61 RLDSAAVSGLERGDRRIFTYRGQRDDEPWCLVSYSLPE-VDRSKRVQLRRTLMGLGFGAV 119 Query: 139 APSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAM 198 L +P A+V+ L V D F Q PL A A + W L A Sbjct: 120 TDGLWIAPGHLRAEVEDALVGLDVRDRATIFITQTPLTAEPFAQAA--AKWWQLDTLAAR 177 Query: 199 YETFIQSFRPLVPLLKEAA---------DELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 + F++ + PL + +A L P AF + L + ++ + DP LP Sbjct: 178 HTEFLRRYEHAAPLSENSAPLPENSAPKSSLEPREAFVLWLHCVDEWKAIPYVDPGLPPS 237 Query: 250 LLPAHWAGHTARQLCINIYQRVAPAALAFVSE 281 LP+ W G + +L + + A A A V E Sbjct: 238 ALPSDWPGMRSVELFAQLRRTQAEPARAHVRE 269 >UniRef50_C7QAQ9 Transcriptional regulator, PaaX family n=11 Tax=Actinomycetales RepID=C7QAQ9_CATAD Length = 267 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 9/261 (3%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 SLI S +G GG I + L LL LG VR+A+ R + G+L + + Sbjct: 8 SLIVSFFGAYGRELGGWIAVADLVTLLGRLGVDAPAVRSAVSRQKQRGFLQARQADGVAG 67 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSE--GLDKSTLADVKKQLIWQGFGAL 138 YSLS + + + +IY + W+L + ++ ++ +L GFG Sbjct: 68 YSLSPEAEEILADGDRRIYLRQDVQLSDGWVLAVFSVPETERHRRHLLRSRLSRLGFGTT 127 Query: 139 APSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAM 198 AP + +PS + + L +A V F A L+ A LR W L A Sbjct: 128 APGVWIAPSHLAEEARHTLERLELAAYVDLFHADY---LAYADLRDSAARWWDLGAVQAG 184 Query: 199 YETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGH 258 Y F F L + + A +++ L +RR+ +DP LP ELLP W G Sbjct: 185 YAEFSAQF--LATDTDTDSADDADAFATYLRAL--DAWRRMPYRDPGLPPELLPQDWQGT 240 Query: 259 TARQLCINIYQRVAPAALAFV 279 A + ++ R+ L++V Sbjct: 241 QAADIFFGLHDRLRGRGLSYV 261 >UniRef50_D1WW52 Transcriptional regulator, PaaX family n=4 Tax=Streptomyces RepID=D1WW52_9ACTO Length = 273 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 117/266 (43%), Gaps = 10/266 (3%) Query: 21 SLISSLYGD-SLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRS 79 SLI +LYG G + L LL +G VR+ + RL + G L +R S Sbjct: 9 SLIVTLYGAYGRPPDGAPFAVSELIRLLHAVGVDAPSVRSCVSRLKRRGLLVAARAADGS 68 Query: 80 F-YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLL--SEGLDKSTLADVKKQLIWQGFG 136 Y+LS +L + +IYR P W+L + +++ ++ +L GFG Sbjct: 69 AGYALSPDARQLLDDGDRRIYRRRGPRLSDGWVLAVFSVPEAERNKRHLLRSRLARLGFG 128 Query: 137 ALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQN 196 AP + +P+ + + L G+A V F + L AA R V W L Sbjct: 129 TAAPGVWIAPAGLYEETRHTLQRLGLAPYVDLFRGE---HLGFAATREAVARWWDLAAVA 185 Query: 197 AMYETFIQSFRPLVPLLKEAADE---LTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPA 253 ++ F++ P++ + + D P+ A+ LL + +R++ DP LP ELLP Sbjct: 186 RLHHEFLELHEPVLRDWEASGDADEAPRPQTAYRDYLLALDSWRQLPYADPGLPPELLPG 245 Query: 254 HWAGHTARQLCINIYQRVAPAALAFV 279 W G + ++ +++R+ A +V Sbjct: 246 DWPGGRSAEVFDRLHERLRDAGERYV 271 >UniRef50_Q1GJJ7 PaaX-like protein n=9 Tax=Rhodobacterales RepID=Q1GJJ7_SILST Length = 301 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 110/271 (40%), Gaps = 39/271 (14%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 S+I S GD +G + +L ++ LG +R AL RL K+GW + R GR SF Sbjct: 42 SIIVSFLGDMAQDKGAGVSSAALTRVITPLGIKPEAIRVALHRLRKDGWTESQRRGRGSF 101 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLS---EGL-------DKSTLADVKKQL 130 + L+ G + + +IY A W LL++ +GL D++ L ++ Sbjct: 102 HFLTPFGRQQSALVTPRIY-ARSTCETDAWTLLVAGTPDGLETLDALCDQTPLTSIRVNR 160 Query: 131 IWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECW 190 A A S L + H G + + E PL S AAL Sbjct: 161 HAAITPGPAMQHAAETSHMLVANLDVAHVPGWLQDDLFPE---PLRQSCAALD------- 210 Query: 191 HLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 Q+ PL + +L+P + ++ LL+H +RR+ L+ P +P Sbjct: 211 -------------QALAPL-----GSPPDLSPLQRACLRTLLVHRWRRITLRHPDVPRIF 252 Query: 251 LPAHWAGHTARQLCINIYQRVAPAALAFVSE 281 PA W+G + R + ++ LA + + Sbjct: 253 HPADWSGESCRTRVFALLDKLPQPELAEIED 283 >UniRef50_D1VIM9 Transcriptional regulator, PaaX family n=1 Tax=Frankia sp. EuI1c RepID=D1VIM9_9ACTO Length = 335 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 117/276 (42%), Gaps = 22/276 (7%) Query: 22 LISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFY 81 L+++L GD R + +L ALL G R AL RL + G L+ S++GR ++Y Sbjct: 49 LLTTLLGDYWYGRREHLPSAALVALLGDFGVTTVGARAALSRLARRGVLESSKVGRHTYY 108 Query: 82 SL----SDKGLRLTRRAESKIYRAEQPAWDGKWLLL---LSEGLDKSTLADVKKQLIWQG 134 L S+ L R S R E WDG+W + L E L + V+ +L W G Sbjct: 109 GLTAAASEVVLENVHRLRSFGERHEP--WDGRWTVAAFSLPEDL-RDVRHTVRSRLRWLG 165 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGV-ADNVICFEAQIPLALSRAALRARVEECWHLT 193 F L + SP + + E GV A V+ + R + A W L+ Sbjct: 166 FAPLYDGMWVSPRPVAEPARRVFAELGVLASTVLTTTVDARRSDPRPPMAA-----WDLS 220 Query: 194 EQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPA 253 E YE F+ + PL ++ P A + L++ + R DP LP +LLP Sbjct: 221 ELRGQYEEFVATTSPLRDQVRAGGVAGAP--ALVARTALLNAWWRFPSLDPDLPLDLLPE 278 Query: 254 HWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGE 289 W AR+L Y + P A+ E+ VGE Sbjct: 279 RWPRRGARELFAETYDALGPLAV----ERFRAVVGE 310 >UniRef50_A9DZC9 PaaX domain protein n=4 Tax=Rhodobacteraceae RepID=A9DZC9_9RHOB Length = 263 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 110/266 (41%), Gaps = 28/266 (10%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 SL+ SL+GD G I L+ ++ L R AL RL +GWL ++GR S Sbjct: 23 SLMISLFGDLAQGNGDAIDGPVLSTIMAALDVRPEASRVALHRLRNDGWLQSRKVGRISQ 82 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAP 140 +SL+ +G + A +IY A P W ++++E + ++ L +GF + P Sbjct: 83 HSLTAQGRAESAAASPRIY-AAPPDLSEPWQMVMTEENGR----EIDATLRAEGFIPVMP 137 Query: 141 SLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYE 200 + S+ A +L + P R A+ T Y+ Sbjct: 138 RVYVGRSESTAPKGSL-----------PLRGETPPDWLRRAVEP--------TALEPEYD 178 Query: 201 TFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTA 260 + + L L + E A ++ L++H +RR+ LK P LP L+ + W+G+ Sbjct: 179 ALLHALSTLRGTLACDSHMNALEIAV-LRCLIVHNWRRLALKHPALPGGLIRSDWSGYQC 237 Query: 261 RQLC---INIYQRVAPAALAFVSEKG 283 L +N + R A LA S G Sbjct: 238 HLLVDQLLNRHPRPALQDLAAASAAG 263 >UniRef50_C4RH20 Putative uncharacterized protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RH20_9ACTO Length = 309 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 109/252 (43%), Gaps = 18/252 (7%) Query: 36 GEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAE 95 G I +L +LEG G R L RL + G L SR GR + +SL++ G+ + A Sbjct: 38 GPIRASALIHVLEGAGVAAPATRATLDRLVRSGILARSRSGRETLFSLTEHGMAVLCEAT 97 Query: 96 SKIY--RAEQPAWDGKWLLL---LSEGLDKSTLADVKKQLIWQGFGALAPSLMASPSQ-K 149 ++ R P G W L+ + EG + ++ L W+GF + L +P + Sbjct: 98 YRVRGPRPFDPQGSG-WTLVTFSIPEG-QRMLRHRLRSTLTWEGFAPIRDGLWLAPGEVD 155 Query: 150 LADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPL 209 LA L + + V+ F A+ L+ + V W + + + FI + Sbjct: 156 LAGSLEPLRQDLPPNAVVAFHAR---ELAGFPIGESVRAAWDIEAIRSAHLAFIDVWS-- 210 Query: 210 VPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQ 269 AA + P A ++ +L+ + ++ DP LP E + A W + + I++ Sbjct: 211 ----DPAATTMAPS-ALTVRTMLVADWLALLRADPRLPAEFMDAQWPATQSAETYRRIHK 265 Query: 270 RVAPAALAFVSE 281 ++A A+ A +E Sbjct: 266 KLAEASTAEFAE 277 >UniRef50_D1BV77 Transcriptional regulator, PaaX family n=2 Tax=Actinomycetales RepID=D1BV77_XYLCX Length = 302 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 67/265 (25%), Positives = 111/265 (41%), Gaps = 14/265 (5%) Query: 5 DTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRL 64 DT Q + + + G + GG + LL G + VRTA+ RL Sbjct: 23 DTGTQDTGAQATRRSRTTVVTFLGAVVRPLGGWTPIAGAVELLSQCGLDDPGVRTAIHRL 82 Query: 65 NKEGWL-DVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAW--DGKWLLLLSEGLDKS 121 ++GWL +R G R Y+L++ + I+ A P DG ++ S K Sbjct: 83 KRKGWLASQTRDGVRG-YALTETATATLAAGDEVIWHARTPPALADGWCIVNFSVPESKR 141 Query: 122 TLA-DVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQI--PLALS 178 L ++ L GFG + ++ +P++ + E G+ F P L+ Sbjct: 142 ALRHQLRAHLAALGFGNIGTAVWIAPARMRPAAARAVAELGLEPFTTIFTGDYHGPQDLT 201 Query: 179 RAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRR 238 A + W L + Y F+ ++ L ++EAA + AF + L +I +RR Sbjct: 202 TLAY-----DSWDLAAIDQGYRGFVDAYGDLASRIEEAAP--SGREAFTLHLQMIDAWRR 254 Query: 239 VVLKDPLLPEELLPAHWAGHTARQL 263 + +DP LP E+L A W G +A +L Sbjct: 255 LPFRDPGLPREVLAADWPGPSAARL 279 >UniRef50_C4RGY6 PaaX family transcriptional regulator n=2 Tax=Micromonospora RepID=C4RGY6_9ACTO Length = 322 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 103/235 (43%), Gaps = 9/235 (3%) Query: 42 SLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRA 101 ++ ALL G R A+ RL + G L+ SR GRRS Y LS I + Sbjct: 52 AIVALLAEAGVSTAGARAAISRLARRGVLEGSRQGRRSAYRLSRAAAASLVGGGRWILDS 111 Query: 102 EQPA--WDGKWLLL-LSEGLDKSTLAD-VKKQLIWQGFGALAPSLMASPSQKLADVQTLL 157 PA WDG+W ++ S ++S ++ QL W G+ L L SP + L Sbjct: 112 TAPAAPWDGRWTIVAFSLPQERSAQRRALRGQLRWLGYAPLYDGLWISPCDLTPKARERL 171 Query: 158 HEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAA 217 + V F AQ L RA + E W + N Y+ F++ + PL+P ++ Sbjct: 172 AQL-APGTVTVFRAQQ-ATLDGTGHRAPI-EAWDIAAINRHYQEFLRRWTPLLPGVESGG 228 Query: 218 DELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVA 272 + A + ++ YRR DP LP +LLPA W AR+L +Y +A Sbjct: 229 --IDGAAAVRARTEVMDTYRRFPTLDPQLPLDLLPAGWLRQPARELFSAVYDGLA 281 >UniRef50_C1RMN4 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RMN4_9CELL Length = 306 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 27/244 (11%) Query: 46 LLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKI--YRAEQ 103 +L G R AL RL + G + GR + Y + + + + A Sbjct: 39 VLGEFGISPGSARAALARLVRRGLVATEGRGRAATYHVRPDVIAHHQAVMHAFLSFGASP 98 Query: 104 PAWDGKWLLLLSEGLDKSTLAD---VKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEA 160 WDG+WL++ S L +S V+K L +GF L S+ SPS Sbjct: 99 RPWDGQWLVV-SYSLPESGQPQRHAVRKTLGARGFARLYDSVWISPS---------FDAG 148 Query: 161 GVADNVICFEAQIPLALSRAALRARVEE---------CWHLTEQNAMYETFIQSFRPLVP 211 V + + A +P A + +RAR +E + L A Y F++ + L Sbjct: 149 AVREELRALLAAVPGA-RWSVMRARFDEDPDSLGPAAAYDLDGLAASYRAFVEEYAGLRD 207 Query: 212 LLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRV 271 ++ AD + P RA +L ++ +R DP LPE LLPA W AR+ + ++ + Sbjct: 208 DVR--ADRVGPARALVARLSVMDAWRTFADTDPDLPEHLLPASWPRAEARETFLEVHTAL 265 Query: 272 APAA 275 P A Sbjct: 266 GPYA 269 >UniRef50_A3VFU0 PaaX domain protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VFU0_9RHOB Length = 261 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 106/263 (40%), Gaps = 29/263 (11%) Query: 21 SLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSF 80 S++ ++ GD I L L+EG+G + +R AL RL ++GW++ R GR S Sbjct: 20 SVVVTIMGDLCRAPEDRIEGPLLTRLVEGMGINNQALRVALHRLKRDGWIEAERDGRVSS 79 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAP 140 Y+L+ +G T IY A PA L+L + + Q F P Sbjct: 80 YALTPEGRARTEAVRPVIYAAAPPAPVPVSLVL------------PEPTMATQDFIDALP 127 Query: 141 SLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYE 200 P + A + T + ++D ++ L AAL + E A Y Sbjct: 128 DDTVFPGTRSA-LTTGPLDPALSDALVT-------TLDTAALPDWIASVVISPEALADYT 179 Query: 201 TFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTA 260 Q+ L P D LT R ++L+ H +RR+ L+ LP+ +L W G A Sbjct: 180 RLAQTLESLGP---APGDLLT--RTI-LRLIAFHHWRRMRLRHGTLPDLILGPDWPGAQA 233 Query: 261 RQL---CINIYQRVAPAALAFVS 280 R + Y R A AL S Sbjct: 234 RTAIARTLETYPRPALDALRAAS 256 >UniRef50_Q28UN6 PaaX-like protein n=1 Tax=Jannaschia sp. CCS1 RepID=Q28UN6_JANSC Length = 265 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 10 HAVNA-VPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEG 68 A+NA P+ S++ + GD E+ +L++ +E +G + +R AL RL ++G Sbjct: 13 EALNAEAPLKLWSVLVTCLGDVSRDGVIEVSGVALSSFVERMGLQPQAMRVALHRLKRDG 72 Query: 69 WLDVSRIGRRSFYSLSDKGLRLTRRAESKIY 99 W++ R+GR F+ LSD L TR +IY Sbjct: 73 WVESRRLGRVGFHRLSDSALTQTRAVAGRIY 103 >UniRef50_B7X5K7 Putative transcriptional regulator, PaaX family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X5K7_COMTE Length = 288 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 87/219 (39%), Gaps = 34/219 (15%) Query: 51 GFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKI-------YRAEQ 103 G GE VR L RL G V R GR GL L R S + +R EQ Sbjct: 42 GIGENAVRVCLSRLISAG--KVDRPGR---------GLYLARLQPSHLAHIVDNWHRREQ 90 Query: 104 --PAWDGKWLLLL---SEGLDKSTLADVKKQLIWQGFGALAPSLMASPSQ---KLADVQT 155 W G+WL L + DKS ++ L +GF +L P L P + Q Sbjct: 91 LRRPWHGQWLALQDASASKADKSLWRRHQRALGLRGFASLGPQLHIRPDNLRITFTEFQV 150 Query: 156 LLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKE 215 L G+A + L A R + W+ A ++ +I ++ + Sbjct: 151 ELESLGIASGSCLMQIHQIDKLHEAQAR----KLWNTQALEAAHKHWIS----VILSSHQ 202 Query: 216 AADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 D++ A LLL +L+DPLLPEEL+P+H Sbjct: 203 RLDDMPLPSAVRESLLLGRSAIAHLLRDPLLPEELMPSH 241 >UniRef50_A1UBK1 PaaX domain protein, C-terminal domain n=11 Tax=Actinomycetales RepID=A1UBK1_MYCSK Length = 243 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 81/218 (37%), Gaps = 32/218 (14%) Query: 46 LLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPA 105 L E VR AL R+ G L S G Y LSD+ L RR + I + Sbjct: 29 LTADFDIREPTVRVALTRMVGAGDLVRSADG----YRLSDRLLARQRRQDDAINPRPR-R 83 Query: 106 WDGKW--LLLLSEGLDKSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVA 163 WDG W L++ S G D T A ++ L FG L + P + T L E VA Sbjct: 84 WDGTWTTLVITSVGTDARTRAALRNTLQDNRFGELREGVWLRPDN----LDTALPE-DVA 138 Query: 164 DNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPE 223 D V A+ AA W L A + D++ Sbjct: 139 DRVRVLHARDDEPADLAA------RLWDLPAWAAQGRRLL--------------DDMDTA 178 Query: 224 RAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTAR 261 R + + R +L DP+LP +LLPA W G R Sbjct: 179 RDIPARFVTAAAIVRHLLTDPVLPADLLPADWPGDELR 216 >UniRef50_A4A7F5 PaaX-like protein n=2 Tax=unclassified Gammaproteobacteria RepID=A4A7F5_9GAMM Length = 272 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 92/206 (44%), Gaps = 23/206 (11%) Query: 57 VRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQ-PAWDGKWLLLLS 115 +R AL RL K G+L GR Y++ D+G L+ A + E+ AWDG+WL++ + Sbjct: 47 MRVALGRLVKAGFLRSVVRGR---YAIGDRGRVLSETARRWVSAEERVGAWDGRWLMVHT 103 Query: 116 EGL---DKSTLADVKKQLIWQGFGALAPSLMASPS---QKLADVQTLLHEAGVADNVICF 169 L D+S L + L GF L L P+ + A+ + L E G+ + I Sbjct: 104 AHLGRRDQSALKLRDRALQLVGFAELRSGLWCRPANYRESSAETRARLRELGLGEEAIIL 163 Query: 170 EAQIPLALSR--AAL--RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERA 225 A L +R AAL R +EE + + Q AM ++ + KEA T Sbjct: 164 RADSLLLETRELAALWPRQALEEAYAVLTQ-AMIDSMARGDADDTDAGKEALARET---- 218 Query: 226 FHIQLLLIHFYRRVVLKDPLLPEELL 251 LL R + DPLLP+ ++ Sbjct: 219 ----FLLGEAVIRQINGDPLLPDAMV 240 >UniRef50_C1RIT6 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RIT6_9CELL Length = 280 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 86/220 (39%), Gaps = 17/220 (7%) Query: 43 LAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAE 102 L +L LG GE R AL R+ L R GR Y L+ + R+ A +++ + Sbjct: 45 LIGVLGELGAGEAATRAALTRMAGRRLLATVRTGRTVAYGLTPESERVLAEARGRVFDED 104 Query: 103 QPAWDGKWLLLLSEGLDKS---TLADVKKQLIWQGFGALAPSLMASPSQ-KLADVQTLLH 158 A G+ L+S + +S V+ QL W GFG L L +P + +A L Sbjct: 105 PFAPHGEGWTLVSFSVPESRRDVRHRVRAQLTWAGFGLLRDGLWIAPGEVDVAQALGGLQ 164 Query: 159 EAGVAD-NVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAA 217 G D ++ F A S A V W L +E F + P + A Sbjct: 165 PDGRDDLELLAFRAHEVPGFSAA---RSVRTAWRLDAMRERHEQFQARWEGRDPDVPHAL 221 Query: 218 DELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAG 257 ++T A + LL R V P LP E L W G Sbjct: 222 CDVTALVADWLDLL------RAV---PRLPPEHLAPDWPG 252 >UniRef50_A6GRV6 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GRV6_9BURK Length = 269 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 31/248 (12%) Query: 26 LYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLD-----VSRIGRRSF 80 + G L+ +G ++ + G E R A+ RL EG L + +G+++ Sbjct: 11 ILGLMLAGKGRQVKAAHIVLACSLFGVSENSARVAMARLVAEGQLKSAGRGIYTLGKQAA 70 Query: 81 YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADV---KKQLIWQGFGA 137 ++ D +R +++ AWDG + + + L +S + +K L GF Sbjct: 71 FTGQD-----IQRWSNRL--TATCAWDGSFYAVFTAHLGRSNRKQLLLREKALALLGFRE 123 Query: 138 LAPSLMASPSQ---KLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 L P+ L +Q L GV NV+ FE + P +L++ + ++++ W + + Sbjct: 124 FEQGLFLRPANLKLGLTGIQEKLTAQGVEKNVLTFEMK-PSSLAQTS---QIQKLWEIRK 179 Query: 195 QNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 +Y + + + E A+ + I+ RR DPLLP A Sbjct: 180 LERLYLSHTKKLNDWMQGYSRMKLEKAARDAYLVGSQAIYEVRR----DPLLP-----AE 230 Query: 255 WAGHTARQ 262 W ARQ Sbjct: 231 WINAAARQ 238 >UniRef50_B5JMA2 PaaX-like protein C-terminal domain n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMA2_9BACT Length = 263 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 25/213 (11%) Query: 50 LGFGERFVRTALFRLNKEGWLDV----SRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPA 105 G R L RL K G + V S R L++ G+ T ++ A + Sbjct: 36 FGGSNRSYMNLLRRLEKSGLITVEPEDSDAKTRWVPKLTNAGI--TSNSQPSPRTAWEVE 93 Query: 106 WDGKWLLLLSEGLDKSTLA-----DVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEA 160 WDGKW LL D T A ++K L FG L S+ S +KL++++ L E Sbjct: 94 WDGKWSLLT---FDLPTHAGKARKQLRKWLTSLRFGKLQGSVWVS-HRKLSEIENSLEEI 149 Query: 161 GV-ADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADE 219 + ++V+C E A ++ VE+ W L A+Y +++ +E E Sbjct: 150 ELDPESVVCIEGSFWNAPNQDHY---VEKAWQLDRMQALYAEYLRFVE------RETGTE 200 Query: 220 LTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 + + + V DPLLP EL P Sbjct: 201 TSLLDYQKWRTCEKQLWSAAVELDPLLPRELWP 233 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76086 Phenylacetic acid degradation operon negative re... 394 e-108 UniRef50_C4X7Q1 Transcriptional repressor for phenylacetic acid ... 340 5e-92 UniRef50_B0VB47 Phenylacetic acid degradation operon negative re... 338 2e-91 UniRef50_A5W398 Transcriptional regulator, PaaX family n=15 Tax=... 335 1e-90 UniRef50_Q5P0I2 PadR protein, putative regulator of anaerobic ph... 321 2e-86 UniRef50_Q2W5Q7 Phenylacetic acid-responsive transcriptional rep... 319 1e-85 UniRef50_Q13AY1 Phenylacetic acid degradation operon negative re... 315 1e-84 UniRef50_B1KMA4 Transcriptional regulator, PaaX family n=1 Tax=S... 306 4e-82 UniRef50_C4ZL33 Transcriptional regulator, PaaX family n=1 Tax=T... 301 2e-80 UniRef50_A0Z5G1 Phenylacetic acid degradation operon negative re... 299 1e-79 UniRef50_B1YIK0 Transcriptional regulator, PaaX family n=12 Tax=... 290 4e-77 UniRef50_A9IJP6 Phenylacetic acid degradation operon negative re... 280 4e-74 UniRef50_B6R4J9 Phenylacetic acid degradation operon negative re... 278 2e-73 UniRef50_Q47J36 Phenylacetic acid degradation operon negative re... 273 6e-72 UniRef50_A4IPK1 Repressor in the phenylacetic acid catabolic pat... 273 8e-72 UniRef50_A1SSP9 PaaX domain protein, C-terminal domain n=1 Tax=P... 271 3e-71 UniRef50_UPI00016938B8 repressor in the phenylacetic acid catabo... 270 4e-71 UniRef50_Q0K1H1 Transcriptional regulator, PAAX-family n=3 Tax=C... 264 2e-69 UniRef50_C1A4Z4 Phenylacetic acid degradation operon negative re... 264 3e-69 UniRef50_C4KFG5 Transcriptional regulator, PaaX family n=8 Tax=S... 249 9e-65 UniRef50_A7IDQ3 Transcriptional regulator, PaaX family n=5 Tax=R... 244 2e-63 UniRef50_C4KFT2 Transcriptional regulator, PaaX family n=8 Tax=S... 243 6e-63 UniRef50_Q67SZ7 Transcriptional regulatory protein, repressor-ty... 242 1e-62 UniRef50_A6UH21 Transcriptional regulator, PaaX family n=3 Tax=R... 238 2e-61 UniRef50_A0NQP8 Putative regulator of phenylacetic acid degradat... 236 9e-61 UniRef50_B8IKF5 Transcriptional regulator, PaaX family n=1 Tax=M... 231 2e-59 UniRef50_Q07SZ1 Phenylacetic acid degradation operon negative re... 227 5e-58 UniRef50_Q8L3B8 PadR protein (Fragment) n=1 Tax=Azoarcus evansii... 226 1e-57 UniRef50_UPI0000F2FC7D PaaX n=1 Tax=Acinetobacter baumannii ATCC... 225 2e-57 UniRef50_A4V8M5 Putative transcriptional regulator n=2 Tax=Arthr... 224 3e-57 UniRef50_A4FEE0 Repressor in the phenylacetic acid catabolism n=... 224 4e-57 UniRef50_B8IM94 Transcriptional regulator, PaaX family n=1 Tax=M... 224 5e-57 UniRef50_C8X827 Transcriptional regulator, PaaX family n=1 Tax=N... 220 5e-56 UniRef50_UPI0001B54B27 repressor in the phenylacetic acid catabo... 220 6e-56 UniRef50_B9QZJ2 PaaX-like protein n=1 Tax=Labrenzia alexandrii D... 220 6e-56 UniRef50_D0DCP9 Transcriptional regulator, PaaX family n=1 Tax=C... 219 1e-55 UniRef50_Q0SFS4 Transcriptional repressor for phenylacetic acid ... 217 3e-55 UniRef50_A1BBH9 PaaX domain protein n=1 Tax=Paracoccus denitrifi... 216 9e-55 UniRef50_C1XSN8 Phenylacetic acid-responsive transcriptional rep... 214 3e-54 UniRef50_A1RBT3 Putative transcriptional regulator, PaaX-like pr... 214 3e-54 UniRef50_C7QFV2 Transcriptional regulator, PaaX family n=1 Tax=C... 214 4e-54 UniRef50_C4DKB7 Phenylacetic acid-responsive transcriptional rep... 211 2e-53 UniRef50_A3K7C6 Putative regulator of phenylacetic acid degradat... 211 4e-53 UniRef50_C1RIS8 Phenylacetic acid-responsive transcriptional rep... 210 5e-53 UniRef50_C7MUF0 Phenylacetic acid-responsive transcriptional rep... 207 3e-52 UniRef50_UPI0001C31D78 transcriptional regulator, PaaX family n=... 202 1e-50 UniRef50_A4X2T5 Transcriptional regulator, PaaX family n=9 Tax=A... 202 2e-50 UniRef50_A8LCV5 Transcriptional regulator, PaaX family n=1 Tax=F... 201 3e-50 UniRef50_A5FUP1 Transcriptional regulator, PaaX family n=1 Tax=A... 201 3e-50 UniRef50_Q2HWJ0 Putative transcriptional regulator n=1 Tax=Nocar... 200 6e-50 UniRef50_D1BV77 Transcriptional regulator, PaaX family n=2 Tax=A... 199 1e-49 UniRef50_C7QAQ9 Transcriptional regulator, PaaX family n=11 Tax=... 197 5e-49 UniRef50_UPI0001B5864E repressor in the phenylacetic acid catabo... 197 5e-49 UniRef50_A9DGK3 Phenylacetic acid degradation operon negative re... 195 1e-48 UniRef50_UPI000050F8F1 PaaX family transcriptional regulator n=1... 194 3e-48 UniRef50_Q2HR06 Phenyl acetic acid responsive transcriptional re... 193 7e-48 UniRef50_D1WW52 Transcriptional regulator, PaaX family n=4 Tax=S... 191 2e-47 UniRef50_UPI0001B55AC7 probable phenylacetic acid degradation op... 185 2e-45 UniRef50_A3JQN4 Phenylacetic acid degradation operon negative re... 180 5e-44 UniRef50_UPI0000510548 transcriptional regulator, PaaX family pr... 178 2e-43 UniRef50_D1VIM9 Transcriptional regulator, PaaX family n=1 Tax=F... 173 9e-42 UniRef50_C4RGY6 PaaX family transcriptional regulator n=2 Tax=Mi... 170 7e-41 UniRef50_C1RMN4 Phenylacetic acid-responsive transcriptional rep... 170 8e-41 UniRef50_B9NQI2 PaaX domain protein n=2 Tax=Rhodobacteraceae Rep... 169 9e-41 UniRef50_Q72HH2 PhaN n=3 Tax=Thermus RepID=Q72HH2_THET2 167 4e-40 UniRef50_B1N6G0 Putative phenylacetic acid degradation operon ne... 167 7e-40 UniRef50_Q1GJJ7 PaaX-like protein n=9 Tax=Rhodobacterales RepID=... 163 1e-38 UniRef50_C4RH20 Putative uncharacterized protein n=1 Tax=Micromo... 158 2e-37 UniRef50_Q0RIQ5 Putative repressor n=1 Tax=Frankia alni ACN14a R... 157 4e-37 UniRef50_C6D2L6 Putative transcriptional regulator, PaaX family ... 153 6e-36 UniRef50_A9DZC9 PaaX domain protein n=4 Tax=Rhodobacteraceae Rep... 151 3e-35 UniRef50_A8LTJ1 Transcriptional regulator PaaX n=1 Tax=Dinoroseo... 141 3e-32 UniRef50_A3VFU0 PaaX domain protein n=1 Tax=Rhodobacterales bact... 136 1e-30 UniRef50_A1UBK1 PaaX domain protein, C-terminal domain n=11 Tax=... 117 8e-25 UniRef50_B7X5K7 Putative transcriptional regulator, PaaX family ... 110 5e-23 UniRef50_Q28UN6 PaaX-like protein n=1 Tax=Jannaschia sp. CCS1 Re... 100 7e-20 UniRef50_A4A7F5 PaaX-like protein n=2 Tax=unclassified Gammaprot... 98 4e-19 Sequences not found previously or not previously below threshold: UniRef50_C1RIT6 Phenylacetic acid-responsive transcriptional rep... 138 2e-31 UniRef50_A4T1R0 PaaX domain protein, C-terminal domain n=20 Tax=... 108 2e-22 UniRef50_A6GMQ6 Putative uncharacterized protein n=1 Tax=Limnoba... 100 1e-19 UniRef50_B8FMU0 Putative transcriptional regulator, PaaX family ... 93 1e-17 UniRef50_B1MJ58 Putative repressor in the phenylacetic acid cata... 93 1e-17 UniRef50_D0L5H2 PaaX domain protein protein domain protein n=1 T... 93 1e-17 UniRef50_A6GRV6 Putative uncharacterized protein n=1 Tax=Limnoba... 92 2e-17 UniRef50_B6AVQ6 PaaX domain protein, C-terminal domain, putative... 91 5e-17 UniRef50_A0PWR1 Putative uncharacterized protein n=2 Tax=Mycobac... 91 6e-17 UniRef50_C0ZNL2 Putative uncharacterized protein n=2 Tax=Rhodoco... 90 7e-17 UniRef50_A3N453 Conserved domain protein n=24 Tax=Burkholderiale... 85 3e-15 UniRef50_C2AK69 Phenylacetic acid-responsive transcriptional rep... 82 2e-14 UniRef50_B6IPS7 Putative uncharacterized protein n=1 Tax=Rhodosp... 81 4e-14 UniRef50_D0SVR1 Predicted protein n=1 Tax=Acinetobacter lwoffii ... 81 5e-14 UniRef50_B4RT35 PaaX-like protein n=4 Tax=Alteromonadales RepID=... 77 1e-12 UniRef50_Q0C353 Putative uncharacterized protein n=1 Tax=Hyphomo... 75 3e-12 UniRef50_C0ZMY9 Putative uncharacterized protein n=2 Tax=Rhodoco... 75 4e-12 UniRef50_C7ACF7 Putative regulatory protein (Fragment) n=1 Tax=R... 73 1e-11 UniRef50_B7GXE1 PaaX-like family protein n=15 Tax=Acinetobacter ... 73 1e-11 UniRef50_A6WC05 Putative transcriptional regulator, PaaX family ... 70 9e-11 UniRef50_UPI00005103A0 hypothetical protein BlinB_17434 n=1 Tax=... 68 5e-10 UniRef50_B5JMA2 PaaX-like protein C-terminal domain n=1 Tax=Verr... 64 5e-09 UniRef50_B5JH73 PaaX-like protein C-terminal domain n=1 Tax=Verr... 63 9e-09 UniRef50_Q07SC0 PaaX domain protein, C-terminal domain n=2 Tax=P... 62 2e-08 UniRef50_B5JQS9 PaaX-like protein C-terminal domain n=1 Tax=Verr... 60 9e-08 UniRef50_D1A2H2 Putative transcriptional regulator, PaaX family ... 59 2e-07 UniRef50_B1ZX33 Putative transcriptional regulator, PaaX family ... 51 5e-05 UniRef50_D1JAR6 Putative uncharacterized protein n=1 Tax=uncultu... 44 0.005 UniRef50_Q8TZ05 Predicted transcriptional regulator n=1 Tax=Meth... 43 0.010 UniRef50_B7R0B2 Sugar-specific transcriptional regulator TrmB fa... 43 0.011 UniRef50_B4X5E4 Putative uncharacterized protein n=1 Tax=Alcaniv... 43 0.012 UniRef50_B9LN99 Transcriptional regulator, ArsR family n=1 Tax=H... 43 0.012 UniRef50_B2NB02 PaaX family protein n=3 Tax=root RepID=B2NB02_ECOLX 43 0.014 UniRef50_Q72WJ5 ChrB protein n=3 Tax=Desulfovibrionales RepID=Q7... 43 0.016 UniRef50_B9YB12 Putative uncharacterized protein n=1 Tax=Holdema... 43 0.019 UniRef50_O07127 Uncharacterized 16.5 kDa protein in ptsI 3'regio... 43 0.020 UniRef50_C1TMZ1 Transcriptional regulator, gntR family n=5 Tax=B... 42 0.038 UniRef50_B8IZ34 GntR domain protein n=1 Tax=Desulfovibrio desulf... 41 0.060 UniRef50_A9GPM4 Transcriptional repressor CopY n=1 Tax=Sorangium... 41 0.071 UniRef50_B0RMW8 Transcriptional regulator, MarR family n=19 Tax=... 41 0.075 >UniRef50_P76086 Phenylacetic acid degradation operon negative regulatory protein paaX n=30 Tax=Enterobacteriaceae RepID=PAAX_ECOLI Length = 316 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 316/316 (100%), Positives = 316/316 (100%) Query: 1 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA 60 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA Sbjct: 1 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA 60 Query: 61 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK 120 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK Sbjct: 61 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK 120 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA Sbjct: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV Sbjct: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 Query: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR Sbjct: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 Query: 301 FGGLNIEQEALCQFIR 316 FGGLNIEQEALCQFIR Sbjct: 301 FGGLNIEQEALCQFIR 316 >UniRef50_C4X7Q1 Transcriptional repressor for phenylacetic acid degradation n=4 Tax=Enterobacteriaceae RepID=C4X7Q1_KLEPN Length = 308 Score = 340 bits (872), Expect = 5e-92, Method: Composition-based stats. Identities = 249/305 (81%), Positives = 266/305 (87%), Gaps = 1/305 (0%) Query: 1 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA 60 MSKLD FIQ AV A+P+SGTSLI+SLYGD+L RGGE+WLGS+AALLEGLGFGERFVRTA Sbjct: 1 MSKLDAFIQQAVTAMPISGTSLIASLYGDALLQRGGEVWLGSVAALLEGLGFGERFVRTA 60 Query: 61 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK 120 LFRLNKE WLDV RIGRRSFY LSDKGLRLTRRAE KIYRA P WDG WLLLLSEGL+K Sbjct: 61 LFRLNKEEWLDVVRIGRRSFYRLSDKGLRLTRRAEHKIYRASAPEWDGTWLLLLSEGLEK 120 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 + LADVKKQL+WQGFGALAPSL+ASPSQKL DVQ+LLHEAGVA+NVICFEA PLALSRA Sbjct: 121 NVLADVKKQLLWQGFGALAPSLLASPSQKLTDVQSLLHEAGVAENVICFEAHSPLALSRA 180 Query: 181 ALRARVEECWHLTEQNAMYETFIQ-SFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRV 239 ALR+RVEECWHLTEQN MYE FI L L ELTP+R F IQLLLIHFYRRV Sbjct: 181 ALRSRVEECWHLTEQNEMYEAFIALFRPLLPLLRDCDPSELTPDRCFQIQLLLIHFYRRV 240 Query: 240 VLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQ 299 VLKDPLLPEELLPAHWAG TARQLCINIYQRV+P ALAFVSEKGE+SVGELP PG LY+Q Sbjct: 241 VLKDPLLPEELLPAHWAGQTARQLCINIYQRVSPGALAFVSEKGESSVGELPVPGPLYYQ 300 Query: 300 RFGGL 304 RFGGL Sbjct: 301 RFGGL 305 >UniRef50_B0VB47 Phenylacetic acid degradation operon negative regulatory protein n=11 Tax=Acinetobacter RepID=B0VB47_ACIBY Length = 321 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 121/312 (38%), Positives = 177/312 (56%), Gaps = 2/312 (0%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 +K+ I V +SGTSLIS+++GDS+ HRGG I L SL LLE GF +R VRT++ Sbjct: 5 AKIQQIIDSVVKNETLSGTSLISTIFGDSVLHRGGNISLASLIQLLELFGFNDRAVRTSV 64 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS 121 FRL K WL +IGR SFY ++D +AE +IY + WD W L+L LD Sbjct: 65 FRLVKNDWLCSDKIGRTSFYRITDSSRSTYLQAEQRIYNDQMKEWDHYWDLILMSSLDTE 124 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA- 180 A +KK+L W GF ++ +LMA P ++Q LL + +++ V+ F+A+ + + Sbjct: 125 NKALLKKELEWLGFANISTNLMAYPGCNRIELQRLLVDLNMSEQVVVFKAETLQLFNNSV 184 Query: 181 -ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRV 239 + + W + E Y F+ FR + LL + ++L P +AF I+ LLIH+YRR+ Sbjct: 185 DTIGRMLRTNWPIDELRQRYLQFLDIFREIGVLLMQENEQLEPVQAFQIRTLLIHYYRRI 244 Query: 240 VLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQ 299 +LKDP LP ELLP W +AR L +NIY++V A + T+ G +P + Y++ Sbjct: 245 LLKDPALPLELLPTDWPAISARTLSMNIYKKVFEPADEYFLSVAATAEGPMPNATAHYWR 304 Query: 300 RFGGLNIEQEAL 311 RFGGL E L Sbjct: 305 RFGGLVATNERL 316 >UniRef50_A5W398 Transcriptional regulator, PaaX family n=15 Tax=Proteobacteria RepID=A5W398_PSEP1 Length = 334 Score = 335 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 129/304 (42%), Positives = 180/304 (59%), Gaps = 1/304 (0%) Query: 1 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA 60 ++ L+ I P+ +SLI +LYGD++ GG +WLGSL LLE +G ER +RT+ Sbjct: 31 LAPLNHLITRFQEQTPIRASSLIITLYGDAIEPHGGTVWLGSLINLLEPIGINERLIRTS 90 Query: 61 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK 120 +FRL KEGWL ++GRRS+YSL+ G R +A ++Y QPAWDG W L+L L+ Sbjct: 91 IFRLTKEGWLTAEKVGRRSYYSLTGTGRRRFEKAFKRVYSPSQPAWDGAWTLVLLSQLEA 150 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 V+++L WQGFG +AP+L+ P AD+ L + D+ I F+ L+ Sbjct: 151 GKRKAVREELEWQGFGVMAPNLLGCPRADRADLVATLRDLEAGDDSIVFDTHTQEVLASK 210 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 A+RA+V E W + E Y FIQ FRPL LKE L + F + LLIH YRR++ Sbjct: 211 AMRAQVRESWRIDELGQQYSEFIQLFRPLWQGLKEQ-PLLDAQDCFLARTLLIHEYRRLL 269 Query: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 L+DP LP+ELLP W G ARQLC N+Y+ V A +++ ET+ G LP +++R Sbjct: 270 LRDPQLPDELLPGDWEGRAARQLCRNLYRLVFAKAEEWLNAALETADGPLPDVSESFYKR 329 Query: 301 FGGL 304 FGGL Sbjct: 330 FGGL 333 >UniRef50_Q5P0I2 PadR protein, putative regulator of anaerobic phenylacetate metabolism n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P0I2_AZOSE Length = 318 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 169/308 (54%), Gaps = 2/308 (0%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 + +I + V SLI ++YGD ++ GG +WLGS L+E LG ER VRT+++R Sbjct: 6 ITQWINDYLAERRVRANSLIITIYGDFIAPHGGTVWLGSFIRLVEPLGLNERMVRTSVYR 65 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLL-SEGLDKST 122 L+++ WL +IGR+S+YSL+ G R A +IY A Q W+G+W L++ L Sbjct: 66 LSQDKWLVSEQIGRKSYYSLTASGRRRFEHAYRRIYDARQLPWNGEWQLVILPSTLPAPQ 125 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 ++K+L W G+G +AP ++A PS + +L E G D V+ A ALS L Sbjct: 126 RDALRKELSWAGYGTIAPCVLAHPSADTETLLEILQETGTHDKVVPMTAHNLGALSNRPL 185 Query: 183 RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLK 242 + ECW+L A Y F RP++ L+ A +L PE+ F +Q L +H +RR +L Sbjct: 186 QDLARECWNLEAIGATYREFADRLRPVLRALR-TARDLDPEQCFLVQTLTMHDFRRALLH 244 Query: 243 DPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFG 302 DPLLP++L+P W+G AR++C +IY+ A + +T G LP +++RFG Sbjct: 245 DPLLPDQLMPVDWSGAVAREVCRDIYRITYRLAQQHLMATCKTPNGPLPPAAPYFYERFG 304 Query: 303 GLNIEQEA 310 GL Sbjct: 305 GLEDTTHR 312 >UniRef50_Q2W5Q7 Phenylacetic acid-responsive transcriptional repressor n=3 Tax=Proteobacteria RepID=Q2W5Q7_MAGSA Length = 308 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 123/306 (40%), Positives = 174/306 (56%), Gaps = 5/306 (1%) Query: 3 KLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALF 62 ++ + + + SLI ++YGD++SH GG WLGS+ L+E LG ER VRT++F Sbjct: 4 RVGEIVGQVLARLRPKAKSLIITVYGDAISHHGGSAWLGSVINLVEPLGLNERIVRTSVF 63 Query: 63 RLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLS--EGLDK 120 RL+KE WL +IGRRS+Y L++ G R A ++IY WDG+W L ++ EG+D Sbjct: 64 RLSKEAWLSSMQIGRRSYYRLTEMGRRRFEAAHNRIYHFNGKPWDGRWTLAVTNIEGMDA 123 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 +++ L W GFG LA ++ P + V+ L EAGV D + A ++ Sbjct: 124 ERRDSLRRDLGWLGFGQLASGVLVHPDRS--AVRQALAEAGVQDRAVMMVASAEDWVTPE 181 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 ALR + CW L Y F+ +FRPL L A EL P+ F ++ LL+H YRR + Sbjct: 182 ALRDLIHTCWDLDRLAGDYNEFLDTFRPLWQAL-SGAGELDPQMCFVVRTLLMHGYRRAL 240 Query: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 L+DP+LP+ELLPAHW G +AR LC N+Y+ V AA V ET+ G +P Y+ R Sbjct: 241 LRDPMLPDELLPAHWPGTSARVLCRNLYRLVQTAAETHVMGMLETAEGPVPEAHPAYYTR 300 Query: 301 FGGLNI 306 FGGL Sbjct: 301 FGGLQS 306 >UniRef50_Q13AY1 Phenylacetic acid degradation operon negative regulatory protein paaX n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q13AY1_RHOPS Length = 312 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 113/306 (36%), Positives = 173/306 (56%), Gaps = 3/306 (0%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 L +I + P+ SLI ++YGD ++ GG +WLG L+E LG R VRT++FR Sbjct: 6 LSQWIAKQLADRPLRANSLIITIYGDMIAPLGGTVWLGGFIRLVEPLGLNARAVRTSVFR 65 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTL 123 L++E WL +IGRRS+YSL+ G R A +IY +W G W ++L+ G S Sbjct: 66 LSREKWLVSEQIGRRSYYSLTATGRRRFELAFRRIYEDASISWAGDWQVVLTPG--DSLT 123 Query: 124 ADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALR 183 ++K+L+W G+ A+AP +A PS + + +L AG D V+ +A+ ALS ++ Sbjct: 124 PALRKELLWAGYAAIAPGALAHPSAQTDALLDILQNAGAHDKVVVLQARTLGALSSRPIK 183 Query: 184 ARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKD 243 V++CW+L + Y++FI FR + L+ ++ L PE+ F I+ LL+H +RRV L+D Sbjct: 184 ELVDQCWNLGKVAGEYQSFIDRFRSVARALRSTSN-LDPEQCFIIRTLLMHEFRRVQLRD 242 Query: 244 PLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGG 303 P LP +LLP W G AR +C +IY+ + + ETS G LP + RFGG Sbjct: 243 PSLPRQLLPDDWPGDKARVMCRDIYRLCWVKTEEHLMQMLETSDGPLPPAEKSFHARFGG 302 Query: 304 LNIEQE 309 + E+ Sbjct: 303 VIDEEA 308 >UniRef50_B1KMA4 Transcriptional regulator, PaaX family n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KMA4_SHEWM Length = 311 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 157/295 (53%), Gaps = 2/295 (0%) Query: 7 FIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNK 66 FI V SG S++ +L+GD +S G IWLGSL L+ G+ ER +RT++FRL K Sbjct: 10 FINQRVEKS-SSGPSMLVTLFGDLVSQHGNWIWLGSLITGLKPFGYSERLIRTSVFRLVK 68 Query: 67 EGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADV 126 WL ++GRR++Y+LS+ +A +IY +E + W +++ + + Sbjct: 69 SDWLITKKVGRRTYYALSETAKAHHDKAARRIYSSEPSSLADAWTVVIPIFVPDNVKETF 128 Query: 127 KKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARV 186 KKQL W GF L A ++ L E G+ D VI ++ + S+ + V Sbjct: 129 KKQLQWLGFSPLTNGAYAHLEVDKQSLEDTLLELGLKDAVIVLSCKVDGSHSKNVFKRLV 188 Query: 187 EECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLL 246 +E W L A Y+ F+ ++RPL+ + + E F +++LLIH YRR++LKD L Sbjct: 189 KEYWGLETLEASYKEFLDAYRPLIIKFNKG-KMPSDETCFLLRILLIHEYRRILLKDKQL 247 Query: 247 PEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 PE++LP W G A +L +Y ++A A++ + E E + G LP + ++QRF Sbjct: 248 PEDMLPNGWVGFEAHELVGKLYAQLAQASVNYAVENLENAQGHLPYVSAKFWQRF 302 >UniRef50_C4ZL33 Transcriptional regulator, PaaX family n=1 Tax=Thauera sp. MZ1T RepID=C4ZL33_THASP Length = 319 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 172/308 (55%), Gaps = 3/308 (0%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 ++ +++ + +S SLI S+YGD ++ GG +WL L L+ G ER VRT+++R Sbjct: 6 IERWVEAHLAGRRISANSLIISVYGDLIAVHGGVVWLADLIRLMAPFGLNERVVRTSVYR 65 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLL-LSEGLDKST 122 L ++ WL+ ++GRRS+Y L+ G+R A +I+ E W G W ++ L L+ Sbjct: 66 LVQDDWLESGQVGRRSYYRLAASGMRRFAPAWRRIFEPEGEGWSGTWQVVMLPSALEARV 125 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 +++++L W G+GAL ++ P+ + ++ +L G+ D V+ A+ ++ AA Sbjct: 126 ADNLRRELSWAGYGALNAGVLLRPTDDASTLRNILDGCGLRDRVVPLTARGLDGVTGAAT 185 Query: 183 RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLK 242 V ECW L A Y+ FI+ FRPL+ A E PE+AF +Q LL+H +RRV+L Sbjct: 186 DELVRECWDLQAIAATYDGFIEHFRPLLRAF--GAGEAEPEQAFLVQTLLMHEFRRVLLH 243 Query: 243 DPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFG 302 DP LP +++P W G AR+LC +Y+ AA + T G LP P + +F+RFG Sbjct: 244 DPQLPVQVMPNRWRGDAARELCARLYRLSWRAACRHLQASCATPEGPLPPPSAQFFRRFG 303 Query: 303 GLNIEQEA 310 GL + A Sbjct: 304 GLELPPAA 311 >UniRef50_A0Z5G1 Phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5G1_9GAMM Length = 291 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 109/289 (37%), Positives = 157/289 (54%), Gaps = 1/289 (0%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + SLI +L+GD +S GGEIWLGS+A +E LG +R VRT++FRL KEGWL+V R G Sbjct: 1 MRAKSLIITLFGDVISQHGGEIWLGSIAKSVEALGVNDRLVRTSVFRLAKEGWLEVEREG 60 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFG 136 R+SFY + G + +RA +IY A +W G W LL+ L ++ + ++ L W GF Sbjct: 61 RKSFYGFTRSGSKEYQRAAQRIYSAGGDSWHGTWQLLVPTNLPEAQRDNFRRSLHWLGFR 120 Query: 137 ALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQN 196 A++ A P ++ LL E + V+ EA+ + R V E W L Sbjct: 121 AISNGTFARPGGDEDSIRDLLDEFDLNSGVVVMEAKTSSLTTPKEWRELVSEHWQLRNLE 180 Query: 197 AMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWA 256 Y I F PL L + TP AF +LLLIH YRR++L+D LP +LLP W Sbjct: 181 DEYRQIIGLFSPLKKALDKG-KVPTPLEAFQARLLLIHEYRRILLRDTPLPTDLLPNRWQ 239 Query: 257 GHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLN 305 G ARQL +Y+ +A + +++ + G LP ++QRFGG++ Sbjct: 240 GTVARQLAQALYRDLAKPSTSYIQTELVNRQGRLPESEYYFYQRFGGIS 288 >UniRef50_B1YIK0 Transcriptional regulator, PaaX family n=12 Tax=Bacillales RepID=B1YIK0_EXIS2 Length = 294 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 85/270 (31%), Positives = 136/270 (50%), Gaps = 7/270 (2%) Query: 19 GTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRR 78 S+I ++YGD + H G +IW+GSL LL+ G E+ VR A+ R+ K+GWL + G + Sbjct: 5 TQSMIFTVYGDYIRHYGNQIWVGSLIRLLKEFGHNEQAVRVAVSRMVKQGWLTSQKQGTK 64 Query: 79 SFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFG 136 SFYSL+ +G+ A +IY++ WDGKW L+ + + +++K+L W GFG Sbjct: 65 SFYSLTPRGVERMEEAARRIYKSTPHVWDGKWRTLMYTIPEDKRQIRDELRKELSWSGFG 124 Query: 137 ALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQN 196 L+ + SP+ + + L+ + + F + ++ VE + L E Sbjct: 125 NLSNGVWISPNPLEKEAERLIEAYDIKAYIDFFVGEY---HGPQQDQSLVERAFPLDELQ 181 Query: 197 AMYETFIQSF--RPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 YE FI + R +V + E+ E+ F + L+H YR+ + DP LP+ELLP Sbjct: 182 ERYEQFIAEYSRRYIVHQSRIQLGEMDEEQCFVERTTLVHEYRKFLFTDPGLPQELLPDE 241 Query: 255 WAGHTARQLCINIYQRVAPAALAFVSEKGE 284 W+GH A L Y+ +A A F Sbjct: 242 WSGHHAALLFEQYYRLLAEPASRFFESIFR 271 >UniRef50_A9IJP6 Phenylacetic acid degradation operon negative regulatory protein n=5 Tax=Bordetella RepID=A9IJP6_BORPD Length = 311 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 149/305 (48%), Gaps = 6/305 (1%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 S + I + P SL SL GD+L+ GG IWLG + LLE LG ER +RT++ Sbjct: 6 SPIGRHIARLLKEDPPRAKSLCVSLLGDALACHGGAIWLGGIIELLEPLGINERLLRTSV 65 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS 121 FRL +GWL R GRRS Y LS++GLR T A +IY W+G+W L+ L + Sbjct: 66 FRLVAQGWLQAERHGRRSLYQLSEQGLRHTAHASQRIYVGPAADWNGEWTLVALPRLGNN 125 Query: 122 ---TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALS 178 +++++L W+GFG +AP L A P +L + G+ D + + Sbjct: 126 GLAERTELRRELAWEGFGMIAPGLFAHPQADARAAHDILEKLGIPDKALVLSGRDLAGAG 185 Query: 179 RAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRR 238 + + +CW L Y F + F PL LL E L P AF ++LL+H +RR Sbjct: 186 GLPIASLAPQCWSLDALAGQYRHFSRQFGPLEKLLDE---PLDPADAFATRMLLLHTWRR 242 Query: 239 VVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYF 298 +VL DP LP +LP W GH AR LC IY ++ A+ + + Sbjct: 243 IVLHDPQLPVPMLPERWPGHAARALCGQIYWKLFDASEQHLDAVAGRDNERYTPLSPAVY 302 Query: 299 QRFGG 303 RFGG Sbjct: 303 TRFGG 307 >UniRef50_B6R4J9 Phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R4J9_9RHOB Length = 298 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 91/300 (30%), Positives = 154/300 (51%), Gaps = 16/300 (5%) Query: 5 DTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRL 64 I P+ S+I S++GD ++ RGGE+W+G++ +++ +G VRTA+ RL Sbjct: 9 QKLIDRFHAQKPIRSWSMIISIFGDCVAQRGGELWMGNITEIMQMIGINSGVVRTAMSRL 68 Query: 65 NKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLA 124 +GWL+ +RIGR SFY L+ G +A +IY +G W+ + D A Sbjct: 69 ASDGWLERTRIGRNSFYRLTKMGREAFGQATPRIYARGPAKGNGSWITAILSEGDD--RA 126 Query: 125 DVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRA 184 D ++QLI QG+G +AP+++ P ++ + ++ +++ P + Sbjct: 127 DRREQLIEQGYGVIAPNVLIKPDNGQGAPKS-------SSKIVYMQSKAPADKALQ---- 175 Query: 185 RVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADE---LTPERAFHIQLLLIHFYRRVVL 241 + W+L Y FI+++ L L EA+ ++PE A I+++LIH RR+VL Sbjct: 176 LARQAWNLDSLQQGYSEFIENYHGLHACLSEASGSEPVISPEDALVIRIMLIHDLRRLVL 235 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 +DP LP + LP +WAG AR+L IY + ++ + + G LP P +F+RF Sbjct: 236 RDPELPLQALPDNWAGSIARELAAGIYSALRDRGEIWLDSYAKNAEGTLPPPEPAFFERF 295 >UniRef50_Q47J36 Phenylacetic acid degradation operon negative regulatory protein paaX n=4 Tax=Bacteria RepID=Q47J36_DECAR Length = 352 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 108/306 (35%), Positives = 162/306 (52%), Gaps = 7/306 (2%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 + + + + V SLI +++GD++ RGG IWLGSL LLE L ER +RT++ Sbjct: 40 TAIQSRLNEFRQQRRVQAGSLIITVFGDAILPRGGRIWLGSLIRLLEPLELNERLIRTSV 99 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEG-LDK 120 FRL KE WL IGRR+ Y L+ G R A IY ++ P WD +W L+L G LD Sbjct: 100 FRLVKEEWLRTETIGRRADYVLTPSGRRRFEEASRHIYASDAPLWDRRWRLILVVGDLDP 159 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNV----ICFEAQIPLA 176 V++ L WQGFGAL PS +L+ V L G++ + F A A Sbjct: 160 KLREQVRRALFWQGFGALGADCFVHPSAELSSVLDTLITEGLSSAIGALMPLFAADSRSA 219 Query: 177 LSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLL-KEAADELTPERAFHIQLLLIHF 235 S + V W L Y F+ +++P++ L ++ ++ + AF +++LLIH Sbjct: 220 QSASD-ADLVHRAWDLGHLAEAYSAFVATYQPILDELRRDHLAGVSEQDAFLLRILLIHD 278 Query: 236 YRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGS 295 YRR++L+DP LPE LLPA+W G +R LC +Y+R+ P A + ++ + G +P Sbjct: 279 YRRLLLRDPELPEVLLPANWPGQQSRLLCKELYKRLEPLASRHLDQQLCLADGRVPEEDL 338 Query: 296 LYFQRF 301 +RF Sbjct: 339 SLPERF 344 >UniRef50_A4IPK1 Repressor in the phenylacetic acid catabolic pathway-like protein n=5 Tax=Geobacillus RepID=A4IPK1_GEOTN Length = 291 Score = 273 bits (697), Expect = 8e-72, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 137/287 (47%), Gaps = 11/287 (3%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + +L+ +L+G+ + H G E+W+GSL ++ G E +R A R+ ++ + +V +IG Sbjct: 1 MKPRALMFTLFGEYIQHYGNEVWIGSLIQMMSHFGISESSIRGAALRMVQQEFFEVRKIG 60 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQG 134 S+YSL+ KG R +++Y WDG+W +L + + + ++K+L G Sbjct: 61 NNSYYSLTPKGKRTMMDGFTRVYSLRNYKWDGRWRVLTYSVPEEKRELRSQIRKELSLMG 120 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 FG ++ ASP+ V + + + VI F A ++ S + +E W Sbjct: 121 FGLISHGTWASPNPIEPQVMEWIKDYHLEPYVILFTADSIVSHSNEQI---IERGWDFAY 177 Query: 195 QNAMYETFIQSFRPLVPLLKEAAD--ELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 Y+ FI+++ ++ A ELT F + L+H YR DP P +LLP Sbjct: 178 IAKEYDKFIETYERKYEEFQKQAWNNELTDRECFIERTKLVHEYRSFFFIDPGFPHDLLP 237 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQ 299 W+G AR+L N++Q +A A+ + E P S++ + Sbjct: 238 DDWSGTRARELFFNVHQLLAIPAIRYFETLFE----PAPDRESVFNR 280 >UniRef50_A1SSP9 PaaX domain protein, C-terminal domain n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SSP9_PSYIN Length = 285 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 150/282 (53%), Gaps = 1/282 (0%) Query: 24 SSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSL 83 + GD L H I + SL E LGF +RFVR++LFRL ++GW+D ++GR+S+Y + Sbjct: 1 MTFLGDYLCHSDSAIGMSSLINFFESLGFNQRFVRSSLFRLKQDGWVDAKKVGRKSYYYM 60 Query: 84 SDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLM 143 + + R A KIY E+PAW+G+W + + K+L GFG L + Sbjct: 61 TPERFDEIREANKKIYNTEKPAWNGRWNFIHIPSSTITESNLKGKELAKYGFGILNKGMY 120 Query: 144 ASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFI 203 Q A + + ++ V + W+L + N Y F+ Sbjct: 121 IQADQGQALQPSFKRILSKCSDATILTGAELVSCKEKNKSKFVSDTWNLDKINDDYGAFV 180 Query: 204 QSFRPLVPLLKEAA-DELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQ 262 F P+ +++EA D L E F ++LLLIHFYRR++++DPLLP+E LP +W+G A++ Sbjct: 181 NMFDPIELMIQEAGSDALDNEDCFKLRLLLIHFYRRIIIRDPLLPDEFLPHNWSGRRAQE 240 Query: 263 LCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGL 304 + INIYQ++ A A ++E GET G LP S Y+ RF GL Sbjct: 241 ITINIYQKIHLQAKAHITEHGETIDGLLPLLASDYYSRFNGL 282 >UniRef50_UPI00016938B8 repressor in the phenylacetic acid catabolic pathway n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016938B8 Length = 281 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 89/266 (33%), Positives = 136/266 (51%), Gaps = 8/266 (3%) Query: 30 SLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLR 89 + H G EIW+GSL L+ G E+ VR A+ R+ ++GWL+ ++G RS+YS+S +G + Sbjct: 17 YVRHYGSEIWVGSLTCLMGEFGLTEQAVRAAISRMLRQGWLESLKVGNRSYYSMSPRGKK 76 Query: 90 LTRRAESKIYRAEQPAWDGKWLLLLSEGLDKST--LADVKKQLIWQGFGALAPSLMASPS 147 A ++IY+ E W+GKW + +K ++K+L W GFG L S SP+ Sbjct: 77 RLDEAAARIYKQETDKWNGKWCIASYNIPEKQRGMRDQLRKELAWLGFGMLTTSTWISPN 136 Query: 148 QKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFR 207 V+ ++ G+ D+V F A ++ + R V++CW++ + NA Y FI +R Sbjct: 137 DLADRVKEIVESHGITDHVEIFRAD---HVAWSEPRQLVQKCWNIEDINAAYAEFIDEYR 193 Query: 208 PLVPLL---KEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLC 264 P L E + F + L+H YR+ + DP PEELLP W G A QL Sbjct: 194 PGYDSLLSKMEKGQSVPDGYCFVEKTKLVHQYRKFLFIDPDFPEELLPEVWLGKEADQLF 253 Query: 265 INIYQRVAPAALAFVSEKGETSVGEL 290 N Y + P A F + E+S L Sbjct: 254 QNYYDLLHPGASRFFEQVYESSPDGL 279 >UniRef50_Q0K1H1 Transcriptional regulator, PAAX-family n=3 Tax=Cupriavidus RepID=Q0K1H1_RALEH Length = 312 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 110/301 (36%), Positives = 164/301 (54%), Gaps = 5/301 (1%) Query: 3 KLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALF 62 + + + + S++ +L+GD ++ R IWLGSL L G +R VRTA F Sbjct: 8 PVSPRVARLARGLKLGANSMLVTLFGDVVAPRPQAIWLGSLIRLAAPFGINDRLVRTATF 67 Query: 63 RLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKST 122 RL + WL +R+GRRS+Y LSD GL+ A +IY E WDG+W L++ G ++T Sbjct: 68 RLTADDWLAATRMGRRSYYGLSDAGLQRVLHAGKRIYAGEASEWDGRWTLVMVRGDVRAT 127 Query: 123 -LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA 181 +K++L+W+GFGA+AP +MA P LA ++ +L A D+V EA A S Sbjct: 128 VRQKLKRELLWEGFGAIAPGVMAHPQADLASLREILQAARAQDDVAVMEASSLEAFSIRP 187 Query: 182 LRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVL 241 L+A + + + L + A ++ ++ F PL E A L P AF ++ LL+H YRRV+L Sbjct: 188 LQALMHQTFKLGDVAAAWQALLRRFAPLA----EEAAGLAPADAFFVRTLLVHEYRRVLL 243 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 +DP LPE +LP W G TAR LC +Y + A+ ++ E + G L RF Sbjct: 244 RDPNLPEAMLPQDWPGRTARGLCHTLYGALLDASEDYLHRVVEAADGSLHDANRSLRLRF 303 Query: 302 G 302 G Sbjct: 304 G 304 >UniRef50_C1A4Z4 Phenylacetic acid degradation operon negative regulatory protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A4Z4_GEMAT Length = 308 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 7/302 (2%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 S + + + + P TSL+ +++GD+++ GG WL +L L++ G ER VRT++ Sbjct: 8 SMITRWARQFLRDEPPRATSLVVTVFGDAIAPHGGSAWLRTLIDLMDTFGINERAVRTSV 67 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK- 120 +RL ++ WL+ R GR+S Y+L++ G+R A +IY P WDG+W+L+L + Sbjct: 68 YRLAEDAWLEAQRQGRQSRYALTESGVRRFMLASRRIYHPGLPTWDGQWILVLIPRGAEV 127 Query: 121 -STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSR 179 ++ D++++L W+GF + P L+A P ++ LL E GV D+ AQ ++ Sbjct: 128 MASRTDLRRELAWEGFATVTPGLLAHPQGDTTRLRELLDELGVRDDAFVVRAQDLPGVAA 187 Query: 180 AALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRV 239 L W L Y F+ F P+ + AD +P +AF I+ LL+H YRRV Sbjct: 188 RELSQLAS-YWPLESVATQYRDFLARFEPIAE-VAGKADACSPRQAFLIRTLLVHAYRRV 245 Query: 240 VLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQ 299 VL DP LP +LPA W G TA L +Y V P A A++ + G + + + Sbjct: 246 VLHDPRLPAAMLPADWPGRTAYALSRRLYLAVTPGAEAYLIDALGEDGGLV---NAEFRD 302 Query: 300 RF 301 RF Sbjct: 303 RF 304 >UniRef50_C4KFG5 Transcriptional regulator, PaaX family n=8 Tax=Sulfolobus RepID=C4KFG5_SULIK Length = 266 Score = 249 bits (636), Expect = 9e-65, Method: Composition-based stats. Identities = 76/274 (27%), Positives = 127/274 (46%), Gaps = 15/274 (5%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR-I 75 + SL +LYGD + GG I SL + + GF E +R L R+ K G + + Sbjct: 1 MKIQSLFFTLYGDYVKDSGGTISSKSLIVIFKEFGFSEGAIRAGLHRMKKAGLIVGIKGE 60 Query: 76 GRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLI--WQ 133 R+ Y LS+KG+ ++Y + WD KW +++ + + + + W Sbjct: 61 NRKVSYKLSEKGMLRLLEGTRRVYEKVRRRWDNKWRIVVYNIPENNRELRDRLRRELKWL 120 Query: 134 GFGALAPSLMASPSQKLADVQTLLHEAGVAD---NVICFEAQIPLALSRAALRARVEECW 190 GFG LA S SP+ ++ +++ + V F A + VE+CW Sbjct: 121 GFGMLAQSTWISPNPIEDTLKNFINDHYGSSNGIQVDIFVANYL-----GEPKGLVEKCW 175 Query: 191 HLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 +L+E Y F++ + ++ E L AF ++LL+H YR+ + DP LPE+L Sbjct: 176 NLSEVEQAYRAFLEKWTGVL----EKVSSLKSNEAFVTRILLVHEYRKFLNIDPDLPEDL 231 Query: 251 LPAHWAGHTARQLCINIYQRVAPAALAFVSEKGE 284 LP +W G+TA L + + + + P A F + E Sbjct: 232 LPPNWIGYTAYDLFMKLREELTPKANEFFYKVYE 265 >UniRef50_A7IDQ3 Transcriptional regulator, PaaX family n=5 Tax=Rhizobiales RepID=A7IDQ3_XANP2 Length = 305 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 98/296 (33%), Positives = 144/296 (48%), Gaps = 16/296 (5%) Query: 6 TFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLN 65 I V A P S+I ++YGD++ RGG +WLG+L A +GL + VRTA+ RL Sbjct: 24 DLILDHVRAEPSRTWSIIVTIYGDAIVPRGGSVWLGTLLAFFKGLDIADGVVRTAMSRLA 83 Query: 66 KEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLAD 125 +GWL +RIGR SFY L+DKG RA IY P W G + +LL E + Sbjct: 84 ADGWLTRTRIGRNSFYGLADKGRETFARATEHIYSHRPPEWRGHFQMLLIEP---AAREG 140 Query: 126 VKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRAR 185 + L G+G P + +P+ + L ++ ++ + A + Sbjct: 141 ARAALDAAGYGVPLPGVFIAPAGAEVPEEALAAL------------RLEVSGTPEAQQEL 188 Query: 186 VEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPL 245 W L E Y +F++ F PL L A + LT A ++LLIH YRR+VL+DP+ Sbjct: 189 AGRAWRLEETAQAYVSFMEVFAPLRAAL-AAGETLTDLEAMVARVLLIHEYRRIVLRDPI 247 Query: 246 LPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 LP +LPA W G AR LC +IY V A+ ++ + G+ + +RF Sbjct: 248 LPAAILPADWPGPAARALCADIYAHVIAASERWLDDNAVGEDGDPLPASAKIGRRF 303 >UniRef50_C4KFT2 Transcriptional regulator, PaaX family n=8 Tax=Sulfolobus RepID=C4KFT2_SULIK Length = 261 Score = 243 bits (620), Expect = 6e-63, Method: Composition-based stats. Identities = 82/272 (30%), Positives = 127/272 (46%), Gaps = 16/272 (5%) Query: 17 VSGTSLISSLYGDS-LSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRI 75 + +LI ++ GD LS + G I SL L+ GF VRT L RL +EG + Sbjct: 1 MKLKTLIFTILGDYNLSKKNGAIRARSLVKLVGPFGFTNSAVRTTLHRLKREGLITSVNR 60 Query: 76 GRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQ 133 G Y+ S + L A ++ WDGKW +++ + K+ ++++L W Sbjct: 61 G---SYTFSQETLLKFETAIRRVKEWRFGHWDGKWRVVVYNFGEDNKALRNKIRRELKWL 117 Query: 134 GFGALAPSLMASPSQKLADVQTLLHEAGVADN-VICFEAQIPLALSRAALRARVEECWHL 192 GFG LA S SP+ V ++ + V F A P + + CW+L Sbjct: 118 GFGTLASSTWVSPNPLEDVVNEMIEKYWKDGGKVYLFIAYFP-----QDPQIIIRTCWNL 172 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 +E Y+ FI + L+ D+L+P AF ++ ++H YR+ + DP LPEELLP Sbjct: 173 SEIELKYKEFISKWIGLL----NKIDKLSPAEAFVNKITILHEYRKFLHVDPGLPEELLP 228 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEKGE 284 +W G+ A +L NIY + P A + E Sbjct: 229 NNWIGYEAYKLFKNIYDSLTPLANKYFESVYE 260 >UniRef50_Q67SZ7 Transcriptional regulatory protein, repressor-type n=1 Tax=Symbiobacterium thermophilum RepID=Q67SZ7_SYMTH Length = 285 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 138/273 (50%), Gaps = 8/273 (2%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + SL+ +L+GD + H GGE W +LAA + G E +R AL R+ ++GWL+V ++G Sbjct: 1 MKARSLLFNLWGDYIQHVGGEAWASTLAAWVRPFGVSEAALRQALSRMARQGWLEVRKVG 60 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQG 134 R+ Y+LS G R A ++Y WDG+W +L+ + ++ D++++LIW G Sbjct: 61 NRTCYALSAAGRRRIAEASRRVYDGRDVDWDGRWRVLVYSVPEALRNRRNDLRRELIWTG 120 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 F L+P SP+ V+ LL G+ F A S L V CW L Sbjct: 121 FAHLSPGTWISPNPLEDSVRELLRRYGLEPYATLFVAPYAEPWSAPDL---VRRCWDLEA 177 Query: 195 QNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 A Y+ FI + P L+ ++ + E F Q+ L+H YR+ + DP LP LLP Sbjct: 178 IQASYDRFIARWEP---RLEASSRLHSDEERFVEQIRLVHDYRKFLFVDPGLPRRLLPDT 234 Query: 255 WAGHTARQLCINIYQRVAPAALAFVSEKGETSV 287 W GH AR+L Y R+ P AL F+ E + Sbjct: 235 WRGHDARRLFQAYYARLRPGALRFLERHFEPTQ 267 >UniRef50_A6UH21 Transcriptional regulator, PaaX family n=3 Tax=Rhizobiaceae RepID=A6UH21_SINMW Length = 305 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 92/300 (30%), Positives = 129/300 (43%), Gaps = 20/300 (6%) Query: 8 IQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKE 67 I+ ++ VP+ S I ++YGD + RGG IW+G+L + G+G E VRTA+ RL Sbjct: 16 IREILDEVPLRAASFIVTIYGDVVEPRGGAIWIGNLIEICAGVGISETLVRTAVSRLVAA 75 Query: 68 GWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVK 127 G L R GRRSFY L+D A I+ P + W + G S+ D Sbjct: 76 GRLAGEREGRRSFYRLTDAARTEFAGAARVIF---GPPEEASWHFVQLMG---SSAEDRM 129 Query: 128 KQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVE 187 L G+ L+P L + L F A+I A L+A Sbjct: 130 LMLERSGYARLSPRLAIGVRPFPTAIMPAL----------VFRAEI--AEGAEELKAFAS 177 Query: 188 ECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLP 247 W L Y F+ SF+ L A +TP +LLL+H +R V L+DP LP Sbjct: 178 ASWDLAPHAEAYRRFLGSFQSLAA--PADAGSMTPADCLTARLLLVHQFRFVALRDPRLP 235 Query: 248 EELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIE 307 E LP W G AR+L +Y ++ A ++ + G L A +RF L E Sbjct: 236 AETLPEGWPGDEARRLFARLYLNLSHPADLHAAQHFVAASGPLAASTGATEERFRMLRRE 295 >UniRef50_A0NQP8 Putative regulator of phenylacetic acid degradation, ArsR family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NQP8_9RHOB Length = 285 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 128/306 (41%), Gaps = 26/306 (8%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 + ++ + + P LI ++YGD + RGG +W+G L +L G E VRTA+ Sbjct: 3 TDTESLTEGFLQPFPPKAAQLIVTIYGDIVEPRGGVLWMGDLISLCASFGVNESLVRTAV 62 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLL-SEGLDK 120 RL +G L R GRRSFY+L+ A Y E D WLL +E D+ Sbjct: 63 SRLVSKGQLTGEREGRRSFYALTPDAREEYHLAADLFYGPEDT--DCGWLLTHCTEAADQ 120 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 + L+ GF +L ++ + + F A +R Sbjct: 121 AI-------LMRFGFASLEGNVFIGADRPGRPLLG-----------TTFRAT--DVPNRG 160 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 L+ + L Y F+ F P+ L+ L P A +L L+H YR + Sbjct: 161 DLKDIASSAFGLGSLACDYAEFVSRFGPMQDLVARG---LLPRSALLFRLALVHAYRGIR 217 Query: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 L+DP LP +LP W+G+ AR L +Y+ ++P A ++++ G L +R Sbjct: 218 LRDPRLPRSVLPKDWSGYEARSLFAALYRNLSPGADGYIAQNLMNQDGLLAEEPDAVLKR 277 Query: 301 FGGLNI 306 L+ Sbjct: 278 MQALSS 283 >UniRef50_B8IKF5 Transcriptional regulator, PaaX family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IKF5_METNO Length = 292 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 98/301 (32%), Positives = 141/301 (46%), Gaps = 17/301 (5%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 + + I P+ SL+ +++GD++ RGG + L SL A+ L G+ VRTAL Sbjct: 3 AYVQVLIDQFHRRTPIRAGSLVVTVFGDAVVPRGGVLSLESLLAITRALRIGDGVVRTAL 62 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS 121 RL +GW ++GR SFY L+ +G +A +IY + W G++ LLL +G + Sbjct: 63 SRLVADGWFARRKVGRNSFYRLTPEGAEPFAQATRRIYDSAPQPWSGRFDLLLLDGAED- 121 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA 181 ++ L G+GAL P LM + + L A D Sbjct: 122 -RPGLRADLAAAGYGALGPDLMIGAVAQAGEGAFLRLAATPED--------------PET 166 Query: 182 LRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVL 241 R W L A Y F+ +F P L E + A ++LLLIH YRRVVL Sbjct: 167 ARRLAARAWPLDAVGARYARFVAAFGPAAASLAEG-ERPDDLHALVLRLLLIHEYRRVVL 225 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 +DP LP LLP W G AR LC +Y+ + PA+ ++S T G LP PG + +RF Sbjct: 226 RDPGLPACLLPEDWPGEAARDLCGRLYRSLLPASERWLSAHARTDEGPLPPPGPAFAERF 285 Query: 302 G 302 Sbjct: 286 A 286 >UniRef50_Q07SZ1 Phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07SZ1_RHOP5 Length = 289 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 139/300 (46%), Gaps = 18/300 (6%) Query: 3 KLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALF 62 L I P SLI + +GD++ RGG +WLG+L L L VRTA+ Sbjct: 5 PLSRIIGRF-KREPSRTGSLIITFHGDAILPRGGSVWLGTLLRFLAMLEIDGGVVRTAVS 63 Query: 63 RLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKW-LLLLSEGLDKS 121 RL +GWL ++GR+SFY L+ G A +Y WDG+ LLL+ G D+ Sbjct: 64 RLAADGWLARDKVGRKSFYRLAPTGRERFELAVQHVYNPRSAPWDGRLDLLLIGNGTDRE 123 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA 181 + GFG+ P + +PS V +V ++ + Sbjct: 124 AARAALAE---AGFGSPMPGVWVAPSGT------------VVPSVAADAIRLDVTADSET 168 Query: 182 LRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVL 241 R ++ W L A Y F ++F PL + D + + A ++LLIH YRRV+L Sbjct: 169 GRRLIDASWSLESIAAAYRDFRKTFAPLEAWIGTD-DAPSSDDAMLARVLLIHHYRRVLL 227 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 +DPLLPE LLP W AR+ C +Y+ + PA+ ++ GE+ G LP PG RF Sbjct: 228 RDPLLPEALLPPDWPAREAREFCGRVYRALLPASEQWLEAYGESLNGALPPPGPELKARF 287 >UniRef50_Q8L3B8 PadR protein (Fragment) n=1 Tax=Azoarcus evansii RepID=Q8L3B8_AZOEV Length = 205 Score = 226 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 74/200 (37%), Positives = 112/200 (56%), Gaps = 1/200 (0%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 L+ +I + V SLI ++YGD ++ GG +WLGS L+E LG ER VRT+++R Sbjct: 6 LEQWINDYLAERRVRANSLIITVYGDFIAPHGGTVWLGSFIRLVEPLGLNERMVRTSVYR 65 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKW-LLLLSEGLDKST 122 L+++ WL+ +IGR+S+YSL+ G R A +IY Q W+G+W L++L L Sbjct: 66 LSQDNWLESEQIGRKSYYSLTASGRRRFEHAYRRIYDTPQDTWNGEWQLVVLPSTLGSPE 125 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 ++K+L W G+G +AP +M PS +Q +L + G D V+ +A ALS L Sbjct: 126 RDTLRKELSWAGYGNVAPGVMGHPSPDTETLQEILQDTGTQDKVVPMQASTIGALSTKPL 185 Query: 183 RARVEECWHLTEQNAMYETF 202 + ECW+L A Y F Sbjct: 186 QDLARECWNLDAIEATYSEF 205 >UniRef50_UPI0000F2FC7D PaaX n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F2FC7D Length = 227 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 92 RRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLMASPSQKLA 151 +AE +IY + WD W L+L LD A +KK+L W GF ++ +LMA P Sbjct: 1 MQAEQRIYNDQMKEWDHYWDLILMSSLDTENKALLKKELEWLGFANISTNLMAYPGCNRI 60 Query: 152 DVQTLLHEAGVADNVICFEAQIPLALSRA--ALRARVEECWHLTEQNAMYETFIQSFRPL 209 ++Q LL + +++ V+ F+A+ + + + + W + E Y F+ FR + Sbjct: 61 ELQRLLVDLNMSEQVVVFKAETLQLFNNSVDTIGRMLRTNWPIDELRQRYLQFLDIFREI 120 Query: 210 VPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQ 269 LL + ++L P +AF I+ LLIH+YRR++LKDP LP ELLP W +AR L +NIY+ Sbjct: 121 GVLLMQENEQLEPVQAFQIRTLLIHYYRRILLKDPALPLELLPTDWPAISARTLSMNIYK 180 Query: 270 RVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEAL 311 +V A + T+ G +P + Y++RFGGL E L Sbjct: 181 KVFEPADEYFLSVAATAEGPMPNATAHYWRRFGGLVATNERL 222 >UniRef50_A4V8M5 Putative transcriptional regulator n=2 Tax=Arthrobacter nitroguajacolicus RepID=A4V8M5_9MICC Length = 288 Score = 224 bits (571), Expect = 3e-57, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 115/275 (41%), Gaps = 9/275 (3%) Query: 14 AVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVS 73 A LI ++YG G + L LL LG VR+++ RL K G L Sbjct: 9 APMPRHQHLIVTVYGLYSRTHDGGFAVSDLIRLLGDLGVESAGVRSSVSRLKKRGVLSSF 68 Query: 74 RIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLI 131 R G + Y L+ + R + +I+ + W+L+ + + ++ L Sbjct: 69 RQGGVAAYKLAQGLEDVFRAGDERIFARRRAKKGDDWILVSFSVPEAHRHLRHKLRTILT 128 Query: 132 WQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWH 191 G G ++P L +P +V L AG+ + V F+A L+ +RA+V + W Sbjct: 129 RIGCGQVSPGLWIAPGNLSDEVSQQLDRAGLMEYVDLFKA---APLTDDQIRAKVGQWWD 185 Query: 192 LTEQNAMYETFIQSFRPLVPLLK----EAADELTPERAFHIQLLLIHFYRRVVLKDPLLP 247 L A+Y FI+ + ++ + + AF + ++ +RR+ DP LP Sbjct: 186 LASLEALYNEFIERYEAVLERWLTVDVTTDQSIQEKLAFSDYVPMVTQWRRLPYLDPGLP 245 Query: 248 EELLPAHWAGHTARQLCINIYQRVAPAALAFVSEK 282 E LP W+G A L ++ +AP A + S Sbjct: 246 SEYLPEGWSGLAAETLFAELHAALAPMAEKYASSV 280 >UniRef50_A4FEE0 Repressor in the phenylacetic acid catabolism n=4 Tax=Actinomycetales RepID=A4FEE0_SACEN Length = 288 Score = 224 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 70/267 (26%), Positives = 120/267 (44%), Gaps = 6/267 (2%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 LI ++YG GG + + +L LL LG E VR+++ RL + G L SR G Sbjct: 22 QPRQLIVTVYGLYARESGGWLSVAALVRLLGDLGVDEPAVRSSISRLKRRGILVASRQGG 81 Query: 78 RSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGF 135 + Y LS++ L + R + +I+ E+ WLL + + + ++ QL GF Sbjct: 82 AAGYVLSEQALEILREGDERIFSQERATAADGWLLAVFSVPESQRQKRHVLRTQLTRLGF 141 Query: 136 GALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQ 195 G +AP + +P+ A + L + F + ++ LR +V + W L + Sbjct: 142 GTVAPGVWIAPAHLHAAATSALRRFELDSYAELFRSD---HVAFGDLREKVAQWWDLEQL 198 Query: 196 NAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHW 255 +Y F+ P++ + AF + ++ +RR+ DP LP +LLPA W Sbjct: 199 QELYGRFVGVHEPVLRRWQRRRSRRE-REAFLDYVRVLTDWRRLPYLDPGLPADLLPAEW 257 Query: 256 AGHTARQLCINIYQRVAPAALAFVSEK 282 G A +L ++ + A A+V E Sbjct: 258 NGAVAAELFFSLRASLQEQAHAYVDEV 284 >UniRef50_B8IM94 Transcriptional regulator, PaaX family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IM94_METNO Length = 301 Score = 224 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 132/303 (43%), Gaps = 21/303 (6%) Query: 5 DTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRL 64 + + VP+ S I +LYGD + RGG +W+G++ E +G E VRTA+ RL Sbjct: 14 GALLSRLIEKVPLRSGSFIVTLYGDVVEPRGGRLWMGNIVDTCEAVGISETLVRTAVSRL 73 Query: 65 NKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRA-EQPAWDGKWLLLLSEGLDKSTL 123 G L R GRRSFY L++ R A ++ ++ W WL D Sbjct: 74 VSAGQLTGERQGRRSFYRLTEAARREFLSAARILFEPHDETGWRFVWL-------DPDRS 126 Query: 124 ADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALR 183 + L G+ L P P+ +A ++ FE A + LR Sbjct: 127 GEGGPMLEQAGYVRLGPQWFLGPAH----------QALSDPSLAIFEGTT--AAAGPVLR 174 Query: 184 ARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKD 243 W + NA Y+ F+ +F P+ L + + +A H++LLL+H YR L+D Sbjct: 175 RLAAAHWDIASFNAAYDAFLAAFAPVSEALAKGV-RPSDAQALHLRLLLVHTYRLAALRD 233 Query: 244 PLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGG 303 LP E LP W+GH AR+L ++Y R++P A V + LPA +R Sbjct: 234 ARLPAETLPPDWSGHRARRLFADLYLRLSPGADRHVGHHLLSGESTLPAESPEVSRRLTA 293 Query: 304 LNI 306 L Sbjct: 294 LAR 296 >UniRef50_C8X827 Transcriptional regulator, PaaX family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X827_NAKMY Length = 276 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 75/269 (27%), Positives = 114/269 (42%), Gaps = 12/269 (4%) Query: 13 NAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDV 72 P S +S+I S G L GG I + L L G E VR AL RL G+LD Sbjct: 12 PDRPGSPSSVIVSFAGSFLREIGGAIAVSDLIRCLAAAGVAEPAVRQALSRLKARGFLDP 71 Query: 73 SRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGL--DKSTLADVKKQL 130 R+ R+ Y L+ GL + +I+ + W+L + +++ ++ +L Sbjct: 72 DRVDGRAGYRLTAAGLADLNSGDRRIFHRPSTSEADGWVLAVFSVPESERAQRHRLRSEL 131 Query: 131 IWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECW 190 W GFG +A + A+P + +L A + V F+A + +V + W Sbjct: 132 SWLGFGTVAAGVWAAPRHLAEPTRQVLAAADLDHYVTWFQAHHLSPI-------QVGQWW 184 Query: 191 HLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 L YE F++ + + E ELT E+AF L +I +R DP LP L Sbjct: 185 DLPALRDQYEQFLRQHSSDLAVPDE---ELTDEQAFAHYLRVIDSWRVFPRIDPGLPATL 241 Query: 251 LPAHWAGHTARQLCINIYQRVAPAALAFV 279 LP W A +++ R A LA V Sbjct: 242 LPPDWPAAQAWSTFASLHDRWAQRGLAHV 270 >UniRef50_UPI0001B54B27 repressor in the phenylacetic acid catabolic pathway n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B54B27 Length = 296 Score = 220 bits (560), Expect = 6e-56, Method: Composition-based stats. Identities = 78/275 (28%), Positives = 120/275 (43%), Gaps = 16/275 (5%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 S SL+ ++ G+ + R +W L L L E+ R AL R EGWL RIGR Sbjct: 31 SARSLLMTVLGEYVLPRDRPVWTSILVESLRMLDIEEKSARQALARSAGEGWLVSERIGR 90 Query: 78 RSFYSLSDKGLRLTRRAESKIYR--AEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQ 133 R +SL+ G RL +IY + W+ +WL+L+ + + ++ +L W Sbjct: 91 RVRWSLTPPGRRLLTEGAERIYAFGRDARPWENRWLMLIVSVPEAKRDLRHRLRTRLTWA 150 Query: 134 GFGALAPSLMASPSQ-KLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GFG+ + SP + + Q ++ E G+ + F ++ + + V W L Sbjct: 151 GFGSPVAGVWVSPDPSREPEAQKIVAELGLEAQAMSFTSEYG---AIGDQESMVARSWDL 207 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 +E YE FI F + P +A Q L+H +RR DP LP ELLP Sbjct: 208 SELTDRYEDFIDRFTGVSPSGDQAV--------LRAQTELVHEWRRFPFLDPQLPAELLP 259 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEKGETSV 287 A W+G A +L + PAA A+ + Sbjct: 260 ASWSGTKAAELFHRKHVEWRPAAQAYWDQLTANEE 294 >UniRef50_B9QZJ2 PaaX-like protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QZJ2_9RHOB Length = 314 Score = 220 bits (560), Expect = 6e-56, Method: Composition-based stats. Identities = 80/305 (26%), Positives = 124/305 (40%), Gaps = 26/305 (8%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 S + + + P LI ++YGD + RGG +W+G L L G E VRTA+ Sbjct: 34 SPAPILLPKLLPSYPPKAGPLIVTIYGDIVEPRGGTLWMGDLITLCGQFGVNESLVRTAV 93 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS 121 RL G L+ +R GRRS+Y L+D + A +I+ D LL D++ Sbjct: 94 SRLVARGQLEGARNGRRSYYRLTDAAGIEFQSASEQIFGPP----DSDCDLLFIVQPDRT 149 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA 181 L QGFGA++ +L + + CF+A P S Sbjct: 150 DHQG----LADQGFGAVSETLFVGADRPSRIT-----------SGACFKA-CPDQRSEKE 193 Query: 182 LRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVL 241 + + + + L + A Y +F + L L+ I+L ++H +R + L Sbjct: 194 VAEMLNKVFGLDQLAARYRSFYKRIEALDCF------GLSGLETVTIRLAMVHEFRAIRL 247 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 KDP LP +LP W G +AR+L Y ++ A F+ G L +R Sbjct: 248 KDPRLPPSVLPVDWDGLSARRLFAEKYLELSETADPFIGSSLTGQGGALEDKTGPILKRL 307 Query: 302 GGLNI 306 L Sbjct: 308 SSLRS 312 >UniRef50_D0DCP9 Transcriptional regulator, PaaX family n=1 Tax=Citreicella sp. SE45 RepID=D0DCP9_9RHOB Length = 290 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 127/289 (43%), Gaps = 23/289 (7%) Query: 22 LISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFY 81 I +LYGD + RGG +W+GSL G E VRTA+ RL G L+ RIGR+S+Y Sbjct: 25 FIVTLYGDVVEPRGGMLWMGSLIECCAVHGLNESLVRTAVSRLVGAGRLEGVRIGRKSYY 84 Query: 82 SLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPS 141 LSD R A ++ D WLL LSE TL + + W L+P+ Sbjct: 85 RLSDAARGEFREAARLLFSPPAAPED--WLLCLSE-----TLRETEPPAPW---ARLSPN 134 Query: 142 LMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYET 201 + +P+ + D V+ + L A E W L E YE Sbjct: 135 VAMAPNND---------DVAPLDGVLMRAKHLE---GHGDLHALAHETWRLDEVALAYER 182 Query: 202 FIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTAR 261 F++ L+ L+ A L+P A ++L L+H YR L DP LP P W AR Sbjct: 183 FLERHSGLLDRLEGDAP-LSPSVALALRLRLVHDYRHAALSDPRLPRAACPQDWPAERAR 241 Query: 262 QLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEA 310 QL ++ Y ++ A AFV + + G L A + +R L E A Sbjct: 242 QLFVSAYVGLSAPAEAFVGTQFLSPDGALAARNAETERRLFQLKREAAA 290 >UniRef50_Q0SFS4 Transcriptional repressor for phenylacetic acid degradation n=4 Tax=Actinobacteria (class) RepID=Q0SFS4_RHOSR Length = 287 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 119/272 (43%), Gaps = 8/272 (2%) Query: 13 NAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDV 72 ++ P S TSLI ++ G + GG + + L++ +G R A+ RL K+G L Sbjct: 16 DSRPGSATSLIRTVLGAYVRDLGGWVAIADFVELMQAVGIPSESTRIAVARLKKKGVLRP 75 Query: 73 SRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQL 130 RS Y ++++ + RR + +I+ Q + W L+ + ++ ++++L Sbjct: 76 LTRDGRSGYEVTEQAEAMFRRGDPRIFGFRQMSETDPWRLISFTIPESQRAVRHQLRRRL 135 Query: 131 IWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECW 190 W G G ++P L +P +VQ ++ G+++ V F + + W Sbjct: 136 GWIGCGTVSPGLWIAPEYLAREVQDIVDALGLSEYVTTFVSTSVFVPDS--MGDAATRWW 193 Query: 191 HLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 L A + F+ R + AA+E++P AF + L+ +R + DP LP + Sbjct: 194 DLDGIAARHRDFLDRHR----VALSAAEEVSPREAFVRFVPLLDEWRIIPYIDPGLPAGM 249 Query: 251 LPAHWAGHTARQLCINIYQRVAPAALAFVSEK 282 LP W G + +L + R + +V Sbjct: 250 LPEDWPGADSVRLFASARDRYLDGSRDWVRSV 281 >UniRef50_A1BBH9 PaaX domain protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BBH9_PARDP Length = 284 Score = 216 bits (550), Expect = 9e-55, Method: Composition-based stats. Identities = 87/298 (29%), Positives = 133/298 (44%), Gaps = 29/298 (9%) Query: 7 FIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNK 66 I + + + + I ++YGD + RGG +W G+L + E +G E VRTA+ RL Sbjct: 11 LIDGILEGMALRSAAFIVTVYGDVVVPRGGVLWTGTLIEVCERVGISESLVRTAVSRLVA 70 Query: 67 EGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADV 126 L R+GRRS+Y L R +A +Y+ E PA W +L + L + Sbjct: 71 AHRLRGERLGRRSYYRLDASAQREFDQAARLLYKPEVPAR--GWQILHAPDLTEDEARHQ 128 Query: 127 KKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARV 186 + G + ++ P + V + + F A P L R + Sbjct: 129 R-------MGHMGGAVFIRPDRGQP----------VPEGALPFLASDPPELGR------I 165 Query: 187 EECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLL 246 + W L+ + Y + F PL EA L+ E A +LLL+H YR V+L+DP L Sbjct: 166 GQFWDLSALHQRYLDMLVRFAPLA----EAGAALSDEMALIARLLLVHDYRGVLLRDPRL 221 Query: 247 PEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGL 304 P+ LP W GH AR L +Y++++PAA ++ E S G LP + R L Sbjct: 222 PQPALPPDWQGHEARALFRRLYRQLSPAAERWIGTHFEGSGGFLPEKTAESEARLADL 279 >UniRef50_C1XSN8 Phenylacetic acid-responsive transcriptional repressor n=2 Tax=Meiothermus RepID=C1XSN8_9DEIN Length = 259 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 122/273 (44%), Gaps = 16/273 (5%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + S + +LY + L G W+G L +E LGF E VR A+ R K GW+ + G Sbjct: 1 MRARSTLFTLYMEYLYP-GNRAWVGDLIRWMEALGFSEPAVRAAVSRSVKSGWIIPEKDG 59 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQG 134 R+++Y LSD+ + ++Y+ WDG+W +L+ + ++ + +L+ G Sbjct: 60 RKAYYRLSDRVAWQVEQVRDRLYQNVG-QWDGQWRILIYAVPEAKRTVRDRFRNELVLLG 118 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 FG +P + SP+ L + L+ G+ V F+AQ A + L V + ++L Sbjct: 119 FGTPSPGVWVSPTASLEAARDLVRFYGLGGYVELFQAQRFTAGNPLEL---VRKAYNLDA 175 Query: 195 QNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 Y F++ + TPE AF L+H R+++ DP LP EL P Sbjct: 176 AQQRYREFVRLH---------PFNPKTPEEAFVRLTRLVHEARKLLFLDPGLPPELTPPG 226 Query: 255 WAGHTARQLCINIYQRVAPAALAFVSEKGETSV 287 + G A Q + ++ A + + + Sbjct: 227 FLGPEAHQRFLELHAYFGQKARPMLERESAAAD 259 >UniRef50_A1RBT3 Putative transcriptional regulator, PaaX-like protein family n=1 Tax=Arthrobacter aurescens TC1 RepID=A1RBT3_ARTAT Length = 294 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 121/272 (44%), Gaps = 16/272 (5%) Query: 11 AVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWL 70 AV A PV L+ +++G + G + + +L ++L LG+ VR+++ RL +G L Sbjct: 3 AVPAPPVRHQQLLVTIFGLYGRNAGDALPVSALISMLGSLGYDAPGVRSSVSRLKSKGVL 62 Query: 71 DVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKK 128 R G + Y +S+ + R + +I+ EQPA W+L + + ++ ++ Sbjct: 63 KSVREGGIAKYKISESVSDVFREGDRRIFAPEQPAPVDTWVLAVFSVPESMRNRRHQLRS 122 Query: 129 QLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEE 188 L+ GFG++A + +P+ KL + L + + + V F + + +R ++ E Sbjct: 123 ALLGLGFGSVANGVWIAPAHKLEQARERLTASDLIEFVDLFRSDY---VFDGPMRPKISE 179 Query: 189 CWHLTEQNAMYETFIQSFRPLVPLLKEAADELTP-----------ERAFHIQLLLIHFYR 237 W L E + + F++ + E + AF + ++ +R Sbjct: 180 WWDLKELDDQFTEFLELYDGAEQQWAERVGDDPEVAVAESTEELRRDAFRYYIPMLTMWR 239 Query: 238 RVVLKDPLLPEELLPAHWAGHTARQLCINIYQ 269 + +DP LP + LP W G R+ +++ Sbjct: 240 KFPYRDPNLPADYLPPEWHGPAVRRTFQAVHR 271 >UniRef50_C7QFV2 Transcriptional regulator, PaaX family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QFV2_CATAD Length = 281 Score = 214 bits (544), Expect = 4e-54, Method: Composition-based stats. Identities = 75/265 (28%), Positives = 115/265 (43%), Gaps = 16/265 (6%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 S SL+ +L G+ + W ++ L G E+ R AL R + EGW+ R+ R Sbjct: 20 SARSLLMTLLGEYVLPHERPTWTSTIIEALSADGVEEKAARQALARTSAEGWITTERVSR 79 Query: 78 RSFYSLSDKGLRLTRRAESKIYR--AEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQ 133 R +SL+ +G +L +I+ PAWDG+WL+LL + + ++ +L W Sbjct: 80 RVRWSLTPEGRQLLTEGAERIFSFGRTTPAWDGRWLMLLVTVPETRRDLRHRLRTRLTWA 139 Query: 134 GFGALAPSLMASPSQK-LADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GFG P + +P + + +L + + + F A S +L A V W L Sbjct: 140 GFGTADPGVWINPDPAREDEAREVLRDLDLDQGAMSFTA---AHGSIGSLAAMVARAWDL 196 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 + A YE F+ +F L P T Q L+H +RR DP LP ELLP Sbjct: 197 STLEAEYEAFVSAFGALTPD--------TDAATLRTQTRLVHEWRRFPFLDPRLPRELLP 248 Query: 253 AHWAGHTARQLCINIYQRVAPAALA 277 A W G A ++ + A Sbjct: 249 ADWTGAKAVEVFHARHAEWHEKAQR 273 >UniRef50_C4DKB7 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DKB7_9ACTO Length = 260 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 111/254 (43%), Gaps = 15/254 (5%) Query: 15 VPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR 74 + S SLI +++G GG + + L +L L + VR A+ RL + G L+ S+ Sbjct: 1 MASSPRSLIVTVFGLYAREAGGTLPVSGLVRVLATLSVDTQAVRAAVSRLKRRGMLEPSK 60 Query: 75 IGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIW 132 + + Y+L+ G RL +++I+ + W+L + + ++ ++ +L W Sbjct: 61 VDGAAGYALTGSGRRLLAEGDARIFHPPRAELSDGWVLCVFSVPETMRAKRHVLRGKLTW 120 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GFG AP + +P+ + + +L +A V F + A + + W L Sbjct: 121 LGFGQAAPGVWIAPAHTMDAARAMLAANDLAGYVNLFRSDY---CGDAPVAEAARQWWDL 177 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 AMY FI + R + ++A + + +R++ DP LP ELLP Sbjct: 178 PRLEAMYREFIDALRG----------DPGADQALPAWIRAVTDWRKLPFLDPGLPRELLP 227 Query: 253 AHWAGHTARQLCIN 266 A W GH A L Sbjct: 228 ADWPGHDAVTLFGE 241 >UniRef50_A3K7C6 Putative regulator of phenylacetic acid degradation, ArsR family protein n=1 Tax=Sagittula stellata E-37 RepID=A3K7C6_9RHOB Length = 269 Score = 211 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 121/287 (42%), Gaps = 26/287 (9%) Query: 24 SSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSL 83 ++YGD + RGG +W+G+L G E VRTA+ RL G L+ RIGR+S+Y L Sbjct: 1 MTIYGDVVEPRGGALWIGTLIECCGRHGLNETLVRTAVSRLVASGNLEGVRIGRKSYYHL 60 Query: 84 SDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLM 143 S+ R A ++ A D WLL L+ D W L+P++ Sbjct: 61 SESAREEFREAARLLFLPSPDARD--WLLSLTGAGDLPP--------PWM---RLSPTVA 107 Query: 144 ASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFI 203 +P++ + A+ A LR+ E W L + YE F+ Sbjct: 108 IAPNRDDVAPVDG----------VLMRAEQIGA--HGDLRSLAREKWALDDVARAYEAFL 155 Query: 204 QSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQL 263 + + L+ + L+PE A +L L+H YR LKDP LP P W AR+L Sbjct: 156 ERHQSLLDG-RGTVSSLSPEEALARRLRLVHDYRHAALKDPGLPRGACPTDWPAERARRL 214 Query: 264 CINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEA 310 + +Y ++ A FV E G L + +R L E A Sbjct: 215 FVTVYLGLSAMADEFVGETFLNDNGALSSRTDETERRLARLESEAAA 261 >UniRef50_C1RIS8 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RIS8_9CELL Length = 318 Score = 210 bits (535), Expect = 5e-53, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 11/279 (3%) Query: 9 QHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEG 68 S SL+ +L GD + + +L LL G + R AL R+ K G Sbjct: 7 ARTPRTREGSPPSLLITLLGDYWWGQTDPLPSAALVDLLADFGVSDVAARAALSRMVKHG 66 Query: 69 WLDVSRIGRRSFYSLSDKGLRLTRRAESKIYR---AEQPAWDGKWLLLLSEGLD--KSTL 123 + +R GRR+FY+++ + + R +I R + WDG+W L+ + ++ Sbjct: 67 LVVSARSGRRTFYAMTPRAQGIMRAGAERIVRFGVDDGTGWDGRWSLVAFSVPEANRAAR 126 Query: 124 ADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALR 183 ++ +L W GF L +L SP + + L GV F A P + A Sbjct: 127 EALRTRLRWLGFAPLYDALWISPHPRHDEALAELGALGVT-RATAFVATCPPLPAAALAP 185 Query: 184 ARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKD 243 W L Y TF+ ++ P L + A ++P A + L+ +R D Sbjct: 186 E---SAWDLDGLAERYRTFVTTWEPTHAALSKGA--ISPVDALVKRTELMDAWRAFPGVD 240 Query: 244 PLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEK 282 P LP LLPA W AR L + Y+++ A V + Sbjct: 241 PDLPRRLLPADWPRDRARDLFLETYEQLGAPASVRVRQV 279 >UniRef50_C7MUF0 Phenylacetic acid-responsive transcriptional repressor n=5 Tax=Actinomycetales RepID=C7MUF0_SACVD Length = 292 Score = 207 bits (528), Expect = 3e-52, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 16/285 (5%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 +L+ + +G + RG ++ S+ +L LG E R+ L R+ + G L +R G Sbjct: 20 PRPQTLLLTFFGGYVLRRGVQVATASVLDVLRRLGVSEHATRSTLSRMARRGLLYRTRRG 79 Query: 77 RRSFYSLSDKGLRLTRRAESKIYR--AEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIW 132 R + L+ + + E +I+ A WDG W LL + + ++ +L+W Sbjct: 80 RNVYLGLTPRLREILHDGEYRIWHMGAVNTQWDGTWTLLGFSLPESWQRQRHVLRSRLLW 139 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GFG+L L +PS D +L+ A++V F+A+ AL + V W L Sbjct: 140 AGFGSLQGGLWIAPSP--VDTDAVLNGLEAAEHVKVFQAR---ALPPTDVSELVRNTWDL 194 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 A Y F+ + + + QLLL + + + +DP LP+E LP Sbjct: 195 AAVAAHYRRFLHRWSGPTLPAAQT-------DSLGRQLLLETEWLQTIRQDPRLPKEHLP 247 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLY 297 W A+QL ++ + PAA A +E +T E+ A Sbjct: 248 HDWPAVRAQQLFHLLHAELDPAARATAAEVLDTIPDEVGASDPDT 292 >UniRef50_UPI0001C31D78 transcriptional regulator, PaaX family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D78 Length = 289 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 70/268 (26%), Positives = 109/268 (40%), Gaps = 8/268 (2%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 L+ +L G + R +W G L ALLE +GF R AL RL + + R GR Sbjct: 22 QPQELVMTLLGSYVRSRHETVWSGGLVALLEEMGFSTGASRVALTRLVRRDLIARERSGR 81 Query: 78 RSFYSLSDKGLRLTRRAESKIYR-AEQPAWDGKWLLLLSEGLDKSTLADVK--KQLIWQG 134 Y ++++ ++ + +I+ G W +L + + L + ++L + G Sbjct: 82 LIHYRITERADQVLAEGDRRIFSLGRADTLAGGWTMLWHDIPEAQRLERGRLARRLRFLG 141 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 FG L L SP + +V LL E GVA+ + AAL V W L Sbjct: 142 FGTLQDGLWISPHDREQEVVPLLEELGVAERAGVLVGDVAAMPGTAAL---VRRAWDLDA 198 Query: 195 QNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 Y F F P + A + AF ++ ++H +R DP LP+EL+P Sbjct: 199 LCERYRAFAVQFAP--HARRRGAPRVDDREAFLVRTRIVHLFRGFPFLDPDLPDELMPDP 256 Query: 255 WAGHTARQLCINIYQRVAPAALAFVSEK 282 A A + Y+R+A A Sbjct: 257 RARRRAVDVFDAAYERLAEPAQRHFDAV 284 >UniRef50_A4X2T5 Transcriptional regulator, PaaX family n=9 Tax=Actinomycetales RepID=A4X2T5_SALTO Length = 272 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 78/270 (28%), Positives = 118/270 (43%), Gaps = 9/270 (3%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + S + LYGD L RGG + +L LL LG VRTA+ R+ ++GWL+ R+ Sbjct: 1 MQARSALFDLYGDHLRPRGGRAQVAALVKLLAPLGIAPPAVRTAVSRMVRQGWLEPLRMA 60 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKW-LLLLSEGLDKSTLADVKKQLIWQGF 135 YS++ K R A ++IYR + WDG++ LL+++ + + L + G+ Sbjct: 61 TGPGYSITPKAARRLDEAATRIYRTGKTGWDGRFDLLVVAAPAARRERQRLAANLSFLGY 120 Query: 136 GALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQ 195 G L + ++ DV LL EAGV A V W L E Sbjct: 121 GMLDECTWVA-TRPGEDVDLLLDEAGVRYE----RFTAAHAAGTPGAMGVVRRAWDLAEI 175 Query: 196 NAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHW 255 YE F+ R L+ + + E A+ + L+H +R + +DP LP LLP W Sbjct: 176 GQAYEQFVAEQRALLAGVTVRSP---DEEAYAARFRLVHAWRTFLFRDPQLPPALLPERW 232 Query: 256 AGHTARQLCINIYQRVAPAALAFVSEKGET 285 G A R+ PAA +V + Sbjct: 233 PGTAAGSFFDRHAARLRPAADRYVEACLDA 262 >UniRef50_A8LCV5 Transcriptional regulator, PaaX family n=1 Tax=Frankia sp. EAN1pec RepID=A8LCV5_FRASN Length = 333 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 72/280 (25%), Positives = 120/280 (42%), Gaps = 12/280 (4%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 L+++L GD + R + L +LL R AL RL++ G L+ SRIGR Sbjct: 52 QPQHLLTTLLGDYWAGRREHVPSVVLVSLLADFDVSTVGARAALSRLSRRGLLESSRIGR 111 Query: 78 RSFYSLSDKGLRLTRRAESKI--YRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQ 133 ++Y L+ + + ++I + WDG+W + + + V+ +L W Sbjct: 112 NTYYGLTAEASAAILASANRIFTFGLRHDPWDGRWTVAAFSIPEDQRDVRHAVRARLRWL 171 Query: 134 GFGALAPSLMASPSQKLADVQTLLHEAGV-ADNVICFEAQIPLALSRAALRARVEECWHL 192 GF L + +P + + E GV A V+ ++ + R + A W L Sbjct: 172 GFAPLYDGMWVTPRSAGEAARRVFAELGVIASTVLITTSEARRSDPRPPMAA-----WDL 226 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 TE YE F++++ PL+ ++ E+ A + ++ + R DP LP +LLP Sbjct: 227 TELQRTYEEFVRTYTPLLERVRHG--EVCGAEALAARTAVMESWGRFPSLDPDLPIDLLP 284 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPA 292 W AR + IY +A A+A V E EL Sbjct: 285 GRWPRREARTVFAEIYDGLAVPAVARVRELLAEVSPELAD 324 >UniRef50_A5FUP1 Transcriptional regulator, PaaX family n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FUP1_ACICJ Length = 289 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 89/296 (30%), Positives = 126/296 (42%), Gaps = 19/296 (6%) Query: 10 HAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGW 69 ++ P SLI +L+GD+L RG I L ++ L E LG G +RTA+ RL +GW Sbjct: 10 ARLHEQPSHTGSLIVTLFGDALLPRGSAIALATILDLFESLGIGPGVIRTAISRLAADGW 69 Query: 70 LDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQ 129 L SR GR S+Y + RA IY + ++ L E +++ Sbjct: 70 LVASRRGRSSYYRIGPSRRGEFIRAARHIYGRPRGTAARSLIIALPEPGP--GREPARER 127 Query: 130 LIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEEC 189 GF + ++ +P + L + I A +LR Sbjct: 128 FNRLGFAS-WQGILLAPDRPLPRS--------LEAGSIVLRA----TGGPESLRRLAARA 174 Query: 190 WHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 W L Y+ F+ F L A P A +LLLIH YRR+VL+DP LP Sbjct: 175 WRLDALCDHYKGFLAIFGGLTA----DAPAFDPRDALLARLLLIHDYRRIVLRDPRLPAT 230 Query: 250 LLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLN 305 LP WAG AR+LC +Y+ + A+ ++S G T G LP S RF L Sbjct: 231 FLPEEWAGDGARRLCAQLYEALLDASELWLSHNGATETGALPTADSTLRHRFADLR 286 >UniRef50_Q2HWJ0 Putative transcriptional regulator n=1 Tax=Nocardioides aromaticivorans RepID=Q2HWJ0_9ACTO Length = 266 Score = 200 bits (508), Expect = 6e-50, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 107/268 (39%), Gaps = 13/268 (4%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 +++ + G + G + + L+ +G +RTA+FRL + GWL+ Sbjct: 4 RSRTVVVTFLGAIVRPMGDWMPIAGAVDLMTQVGVDAASLRTAVFRLKERGWLESQTRHG 63 Query: 78 RSFYSLSDKGLRLTRRAESKIYRAEQPA-WDGKWLLLLSEGLD--KSTLADVKKQLIWQG 134 Y+L+D L + I+ A QPA W ++ + +S ++ L G Sbjct: 64 ARGYALTDHALATLTAGDEVIWHARQPADLHAGWCIINFSVPESIRSKRYQLRSHLSALG 123 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 FG + ++ +P++ + + E G+ + F + L + E W L Sbjct: 124 FGNIGTAMWIAPARMRGAAEQAVAELGLDKHAAIFVGDY---VGTQDLTGLLYESWDLAG 180 Query: 195 QNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 + Y FI + + P + P AF L L+ +RR+ +DP LP E+L + Sbjct: 181 IDRSYREFIDEYADIAPPSE-------PRPAFATYLGLVDHWRRLPFRDPGLPREVLGSD 233 Query: 255 WAGHTARQLCINIYQRVAPAALAFVSEK 282 W+ A + + + A+ + Sbjct: 234 WSAPEATAVFERLVATLEKPAIEHAAAY 261 >UniRef50_D1BV77 Transcriptional regulator, PaaX family n=2 Tax=Actinomycetales RepID=D1BV77_XYLCX Length = 302 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 62/279 (22%), Positives = 110/279 (39%), Gaps = 8/279 (2%) Query: 5 DTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRL 64 DT Q + + + G + GG + LL G + VRTA+ RL Sbjct: 23 DTGTQDTGAQATRRSRTTVVTFLGAVVRPLGGWTPIAGAVELLSQCGLDDPGVRTAIHRL 82 Query: 65 NKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAE-QPAWDGKWLLLLSEGLD--KS 121 ++GWL Y+L++ + I+ A PA W ++ + ++ Sbjct: 83 KRKGWLASQTRDGVRGYALTETATATLAAGDEVIWHARTPPALADGWCIVNFSVPESKRA 142 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA 181 ++ L GFG + ++ +P++ + E G+ F Sbjct: 143 LRHQLRAHLAALGFGNIGTAVWIAPARMRPAAARAVAELGLEPFTTIFTGDY---HGPQD 199 Query: 182 LRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVL 241 L + W L + Y F+ ++ L ++EAA + AF + L +I +RR+ Sbjct: 200 LTTLAYDSWDLAAIDQGYRGFVDAYGDLASRIEEAAP--SGREAFTLHLQMIDAWRRLPF 257 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVS 280 +DP LP E+L A W G +A +L + + ALA + Sbjct: 258 RDPGLPREVLAADWPGPSAARLFERMVAVLEAPALAHAA 296 >UniRef50_C7QAQ9 Transcriptional regulator, PaaX family n=11 Tax=Actinomycetales RepID=C7QAQ9_CATAD Length = 267 Score = 197 bits (500), Expect = 5e-49, Method: Composition-based stats. Identities = 69/268 (25%), Positives = 105/268 (39%), Gaps = 9/268 (3%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + SLI S +G GG I + L LL LG VR+A+ R + G+L + Sbjct: 4 PTPRSLIVSFFGAYGRELGGWIAVADLVTLLGRLGVDAPAVRSAVSRQKQRGFLQARQAD 63 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS--TLADVKKQLIWQG 134 + YSLS + + + +IY + W+L + + ++ +L G Sbjct: 64 GVAGYSLSPEAEEILADGDRRIYLRQDVQLSDGWVLAVFSVPETERHRRHLLRSRLSRLG 123 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 FG AP + +PS + + L +A V F A L+ A LR W L Sbjct: 124 FGTTAPGVWIAPSHLAEEARHTLERLELAAYVDLFHADY---LAYADLRDSAARWWDLGA 180 Query: 195 QNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 A Y F F A D L + +RR+ +DP LP ELLP Sbjct: 181 VQAGYAEFSAQFLATDTDTDSADDADAFA----TYLRALDAWRRMPYRDPGLPPELLPQD 236 Query: 255 WAGHTARQLCINIYQRVAPAALAFVSEK 282 W G A + ++ R+ L++V Sbjct: 237 WQGTQAADIFFGLHDRLRGRGLSYVKSV 264 >UniRef50_UPI0001B5864E repressor in the phenylacetic acid catabolism n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B5864E Length = 271 Score = 197 bits (500), Expect = 5e-49, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 110/276 (39%), Gaps = 14/276 (5%) Query: 14 AVPVSGTSLISSLYGDSLSHRGGE-IWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDV 72 + L+ +L G + R +W G L ALL LGF + R AL RL + G L Sbjct: 5 EPARTPQELVMTLLGSYVRPRESRRVWSGGLVALLHELGFSDGAARIALTRLVRRGLLSR 64 Query: 73 SRIGRRSFYSLSDKGLRLTRRAESKIYR-AEQPAWDGKWLLLLSEGLDKST--LADVKKQ 129 R GR YSL+ + + L + +I+ + G W +L + + ++ Sbjct: 65 HREGRLVHYSLTSRTVALLDDGDRRIFGLGRRDEPAGTWTVLWQNIPETRRKSRERLVRR 124 Query: 130 LIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEEC 189 L + GFG + +P + A+V LL E VA+ AL +R Sbjct: 125 LRFLGFGPVQDGTWLAPHDREAEVLALLSELEVAEYAGLMLGTPSAAL---DVRRLAGRA 181 Query: 190 WHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 W L +A Y F+ F L AF ++ L+H YR DP LP E Sbjct: 182 WDLDGLSARYAAFVAEFGG-------TPRGLGDPEAFAVRTRLVHTYREFPSLDPELPSE 234 Query: 250 LLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGET 285 L+PA A +L ++Y +AP A T Sbjct: 235 LIPAPGTRAAAVKLFHDLYSALAPPAQRHFDRTLST 270 >UniRef50_A9DGK3 Phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DGK3_9RHIZ Length = 296 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 134/302 (44%), Gaps = 18/302 (5%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 + T + +S SLI S GD++S RGGE+ G++ AL+ LG G VRTA+ R Sbjct: 11 IQTRLDTLDAGNRLSAWSLIVSFLGDAISPRGGEVSAGAVQALMARLGIGHGAVRTAISR 70 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQ--PAWDGKWLLLLSEGLDKS 121 L+ +GW++ +R GR SFY LS +RAE +IY P + L++ ++ D+ Sbjct: 71 LSADGWIERTREGRNSFYRLSPDVAETVQRAERRIYARTSCLPPECSRTLVIGADAFDQD 130 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA 181 TL L G L P L + ++L A V F AA Sbjct: 131 TL----NTLEALGALVLNPQLSLCFTAAATLPESLRPPATTLAGVSSFAPGADAIARIAA 186 Query: 182 LRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVL 241 R R + L Y VP + E+ E+ A ++ LLIH +RR+ L Sbjct: 187 ARQRAD----LEALRTAY--------APVPGMLESQTEIAAGDAMALRCLLIHEWRRIAL 234 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 + +P L+ A R L IY ++ PA+ A++ + T G LP P + RF Sbjct: 235 RVIAVPAGLVQADDPEPETRALIARIYAQLLPASEAWLDDTAATPAGALPPPDEGFATRF 294 Query: 302 GG 303 G Sbjct: 295 GR 296 >UniRef50_UPI000050F8F1 PaaX family transcriptional regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F8F1 Length = 275 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 13/271 (4%) Query: 22 LISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFY 81 ++ + G L GG I + +L LL G R+A+ RL +G L + + Y Sbjct: 1 MLRTFVGLHLRDLGGWIRVAALLDLLATAGVSNSSTRSAVSRLKGKGLLIPDKREAVAGY 60 Query: 82 SLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGL--DKSTLADVKKQLIWQGFGALA 139 L + R + +I+ D W L+ D+S +++ L+ GFGA+ Sbjct: 61 RLDSAAVSGLERGDRRIFTYRGQRDDEPWCLVSYSLPEVDRSKRVQLRRTLMGLGFGAVT 120 Query: 140 PSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMY 199 L +P A+V+ L V D F Q PL A A + W L A + Sbjct: 121 DGLWIAPGHLRAEVEDALVGLDVRDRATIFITQTPLTAEPFAQAA--AKWWQLDTLAARH 178 Query: 200 ETFIQSFRPLVPLLKEAAD---------ELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 F++ + PL + +A L P AF + L + ++ + DP LP Sbjct: 179 TEFLRRYEHAAPLSENSAPLPENSAPKSSLEPREAFVLWLHCVDEWKAIPYVDPGLPPSA 238 Query: 251 LPAHWAGHTARQLCINIYQRVAPAALAFVSE 281 LP+ W G + +L + + A A A V E Sbjct: 239 LPSDWPGMRSVELFAQLRRTQAEPARAHVRE 269 >UniRef50_Q2HR06 Phenyl acetic acid responsive transcriptional repressor n=1 Tax=Streptomyces sp. SCC 2136 RepID=Q2HR06_9ACTO Length = 262 Score = 193 bits (490), Expect = 7e-48, Method: Composition-based stats. Identities = 73/259 (28%), Positives = 116/259 (44%), Gaps = 15/259 (5%) Query: 23 ISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYS 82 + S GD + R ++ GS+ + G GE R+ L R+ L R GRR ++ Sbjct: 1 MLSFLGDQVLGRDVCVYSGSVIDVFGRAGVGEHATRSTLTRMVGRDLLRRQREGRRMYFG 60 Query: 83 LSDKGLRLTRRAESKIYR--AEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGAL 138 L+++ + R E +I+ A WDG W LL + + D++ QL W GFG L Sbjct: 61 LTERSESVLRDGEQRIWEDGAVNRQWDGSWTLLGFSLPESWQRQRHDLRAQLAWSGFGPL 120 Query: 139 APSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAM 198 L +P ADV ++ E G++ +V F A + + A +EE W L E Sbjct: 121 FGGLWIAPG--EADVSAIVAELGLSAHVKIFRAHADAGM---DIGAMIEETWALGELATR 175 Query: 199 YETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGH 258 YE F ++ + E + A ++L L + +VV +DP LP + LP +W Sbjct: 176 YEAFTHRWQ------RWETTEPAADEALALRLRLSTEWLQVVRRDPRLPVKHLPDNWPAE 229 Query: 259 TARQLCINIYQRVAPAALA 277 A + +Y R+ P A Sbjct: 230 QAEKTFRTVYARLTPLARE 248 >UniRef50_D1WW52 Transcriptional regulator, PaaX family n=4 Tax=Streptomyces RepID=D1WW52_9ACTO Length = 273 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 10/269 (3%) Query: 19 GTSLISSLYGDSLSHR-GGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 SLI +LYG G + L LL +G VR+ + RL + G L +R Sbjct: 7 PRSLIVTLYGAYGRPPDGAPFAVSELIRLLHAVGVDAPSVRSCVSRLKRRGLLVAARAAD 66 Query: 78 RS-FYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQG 134 S Y+LS +L + +IYR P W+L + + ++ ++ +L G Sbjct: 67 GSAGYALSPDARQLLDDGDRRIYRRRGPRLSDGWVLAVFSVPEAERNKRHLLRSRLARLG 126 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 FG AP + +P+ + + L G+A V F + L AA R V W L Sbjct: 127 FGTAAPGVWIAPAGLYEETRHTLQRLGLAPYVDLFRGE---HLGFAATREAVARWWDLAA 183 Query: 195 QNAMYETFIQSFRPLVPLLKEAADE---LTPERAFHIQLLLIHFYRRVVLKDPLLPEELL 251 ++ F++ P++ + + D P+ A+ LL + +R++ DP LP ELL Sbjct: 184 VARLHHEFLELHEPVLRDWEASGDADEAPRPQTAYRDYLLALDSWRQLPYADPGLPPELL 243 Query: 252 PAHWAGHTARQLCINIYQRVAPAALAFVS 280 P W G + ++ +++R+ A +V Sbjct: 244 PGDWPGGRSAEVFDRLHERLRDAGERYVR 272 >UniRef50_UPI0001B55AC7 probable phenylacetic acid degradation operon negative regulatory protein n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B55AC7 Length = 280 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 73/275 (26%), Positives = 112/275 (40%), Gaps = 15/275 (5%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 L+ S++G L R +W G L LLE G R L R+ G + R G Sbjct: 12 PKPQGLLFSMFGAYLQPRTAPMWSGGLVVLLEKFGVTTATGRITLNRMVHRGLAERHRRG 71 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDG---KWLLLLSEGLDKST--LADVKKQLI 131 R Y+LS + L L ++++ A A D W ++ D ++ KQL Sbjct: 72 RAISYTLSPRALHLLEDGDNRL--ATLAAVDDTPKTWTVVWHNLGDNRKADRSNFVKQLR 129 Query: 132 WQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWH 191 + GFG L ++ ASP L +V+ G++D V F+ ++ AAL + W Sbjct: 130 FHGFGQLQEAVWASPKDYLREVKDYAKLLGISDEVAIFQCRLDEETVPAAL---LSHLWQ 186 Query: 192 LTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELL 251 L + YE F + L + E TPE AF ++H +R DP LP Sbjct: 187 LDDLAGHYERFAGRYAALA-----SEPEATPEEAFLACTTMLHTFRSFANLDPELPPLWT 241 Query: 252 PAHWAGHTARQLCINIYQRVAPAALAFVSEKGETS 286 P A A + + P A A+ +E + + Sbjct: 242 PHAGARAKALTVYREALDALRPRAAAYFTEAVDPA 276 >UniRef50_A3JQN4 Phenylacetic acid degradation operon negative regulatory protein paaX n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JQN4_9RHOB Length = 268 Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats. Identities = 78/276 (28%), Positives = 121/276 (43%), Gaps = 26/276 (9%) Query: 3 KLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALF 62 + I + SL+ ++ GD ++ RGG I + L A+ E LG VRTA+ Sbjct: 4 DVKKLIADLHQTGRLRVWSLVMTIMGDVVAPRGGVISMADLLAITEMLGIENGAVRTAMS 63 Query: 63 RLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKST 122 RL+KEGW+ R GR SFY L KGL A +IY E P D W++ + L + Sbjct: 64 RLSKEGWVKGQRQGRVSFYELGPKGLADYAPATQRIYALEPPYADSSWIIAI---LPTAC 120 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 + L+ + A+ + A Q LAD ++ AG+ + LS A + Sbjct: 121 DVAGPRPLLRRSTMAVWLAENAPTEQALADTDAMVFRAGL-------KTLPDWVLSEAGV 173 Query: 183 RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLK 242 ++E ++T + E L+PE A ++LLIH +RR+ L+ Sbjct: 174 GTFIDELNNITNKYTRLEHV----------------SLSPEEALLTRILLIHDWRRLALR 217 Query: 243 DPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAF 278 P LP + P A AR +IY + + A+ Sbjct: 218 HPNLPVDFEPYFVAAGAARAKIGSIYGSLIKPSEAY 253 >UniRef50_UPI0000510548 transcriptional regulator, PaaX family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510548 Length = 271 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 63/279 (22%), Positives = 116/279 (41%), Gaps = 15/279 (5%) Query: 15 VPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR 74 + V SL +L G + + S+ ++ LG GE R+ L R+ + ++ + Sbjct: 1 MTVHPQSLFFALAGLHMLDDPRPLSGASIVFVMGRLGVGESAARSVLQRMAAKNFIVRHK 60 Query: 75 IGRRSFYSLSDKGLRLTRRAESKIYRAEQPA-WDGKWLLLLSEGLD--KSTLADVKKQLI 131 GR++FY+LSD+G + R + K++ QP WDG+W + + + ++ + +L Sbjct: 61 EGRKTFYTLSDRGRAILREGQEKMFAGWQPQDWDGRWTFVRIQVPESKRTLRHQMASRLS 120 Query: 132 WQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWH 191 W GF + +P ++ ++ V+ E + P + + + Sbjct: 121 WAGFAQVDGGPWVAPGPHDVATILGPEQSVISPIVVYGEPKPPTSE------EMLAGAFD 174 Query: 192 LTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELL 251 L E A YE+F + +R + P D L+P A ++ L + + DP LP LL Sbjct: 175 LAELAADYESFGEKWRAVDP------DSLSPVDALVKRVELHLDWLALARTDPQLPATLL 228 Query: 252 PAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGEL 290 P W G + + + VS + EL Sbjct: 229 PKGWPGAAQSISFRELDAELGTREVHAVSGFFAGDLNEL 267 >UniRef50_D1VIM9 Transcriptional regulator, PaaX family n=1 Tax=Frankia sp. EuI1c RepID=D1VIM9_9ACTO Length = 335 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 104/270 (38%), Gaps = 10/270 (3%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 L+++L GD R + +L ALL G R AL RL + G L+ S++G Sbjct: 44 PQPQRLLTTLLGDYWYGRREHLPSAALVALLGDFGVTTVGARAALSRLARRGVLESSKVG 103 Query: 77 RRSFYSLSDKGLRLTRRAESKI--YRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIW 132 R ++Y L+ + ++ + WDG+W + + + V+ +L W Sbjct: 104 RHTYYGLTAAASEVVLENVHRLRSFGERHEPWDGRWTVAAFSLPEDLRDVRHTVRSRLRW 163 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GF L + SP + + E GV + + A W L Sbjct: 164 LGFAPLYDGMWVSPRPVAEPARRVFAELGVLASTVLTTTVDARRSDPRPPMA----AWDL 219 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 +E YE F+ + PL ++ P A + L++ + R DP LP +LLP Sbjct: 220 SELRGQYEEFVATTSPLRDQVRAGGVAGAP--ALVARTALLNAWWRFPSLDPDLPLDLLP 277 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEK 282 W AR+L Y + P A+ Sbjct: 278 ERWPRRGARELFAETYDALGPLAVERFRAV 307 >UniRef50_C4RGY6 PaaX family transcriptional regulator n=2 Tax=Micromonospora RepID=C4RGY6_9ACTO Length = 322 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 103/271 (38%), Gaps = 9/271 (3%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 S + +L D I ++ ALL G R A+ RL + G L+ SR GR Sbjct: 28 SPQGVTVTLLADYTLRTRAAIPSAAIVALLAEAGVSTAGARAAISRLARRGVLEGSRQGR 87 Query: 78 RSFYSLSDKGLRLTRRAESKIYRAEQP--AWDGKWLLLLSEGLDKS--TLADVKKQLIWQ 133 RS Y LS I + P WDG+W ++ + ++ QL W Sbjct: 88 RSAYRLSRAAAASLVGGGRWILDSTAPAAPWDGRWTIVAFSLPQERSAQRRALRGQLRWL 147 Query: 134 GFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLT 193 G+ L L SP + L + V F AQ E W + Sbjct: 148 GYAPLYDGLWISPCDLTPKARERLAQLA-PGTVTVFRAQQATLDGTG--HRAPIEAWDIA 204 Query: 194 EQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPA 253 N Y+ F++ + PL+P ++ + A + ++ YRR DP LP +LLPA Sbjct: 205 AINRHYQEFLRRWTPLLPGVESGG--IDGAAAVRARTEVMDTYRRFPTLDPQLPLDLLPA 262 Query: 254 HWAGHTARQLCINIYQRVAPAALAFVSEKGE 284 W AR+L +Y +A A V Sbjct: 263 GWLRQPARELFSAVYDGLAEPAERHVRAVVA 293 >UniRef50_C1RMN4 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RMN4_9CELL Length = 306 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 65/272 (23%), Positives = 106/272 (38%), Gaps = 13/272 (4%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 S L++++ G+ +LAA+L G R AL RL + G + G Sbjct: 10 PSPQHLLATVLGEYFDSSDARPPAAALAAVLGEFGISPGSARAALARLVRRGLVATEGRG 69 Query: 77 RRSFYSLSDKGLRLTRRAESKI--YRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIW 132 R + Y + + + + A WDG+WL++ + + V+K L Sbjct: 70 RAATYHVRPDVIAHHQAVMHAFLSFGASPRPWDGQWLVVSYSLPESGQPQRHAVRKTLGA 129 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVA---DNVICFEAQIPLALSRAALRARVEEC 189 +GF L S+ SPS V+ L A A+ A Sbjct: 130 RGFARLYDSVWISPSFDAGAVREELRALLAAVPGARWSVMRARFDEDPDSLGPAA----A 185 Query: 190 WHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 + L A Y F++ + L ++ AD + P RA +L ++ +R DP LPE Sbjct: 186 YDLDGLAASYRAFVEEYAGLRDDVR--ADRVGPARALVARLSVMDAWRTFADTDPDLPEH 243 Query: 250 LLPAHWAGHTARQLCINIYQRVAPAALAFVSE 281 LLPA W AR+ + ++ + P A + E Sbjct: 244 LLPASWPRAEARETFLEVHTALGPYAQERLVE 275 >UniRef50_B9NQI2 PaaX domain protein n=2 Tax=Rhodobacteraceae RepID=B9NQI2_9RHOB Length = 266 Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 21/277 (7%) Query: 5 DTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRL 64 +T + + S+I SL+GD G I G+L ++E +G +R AL RL Sbjct: 9 ETAVTDLTDPHDQRVWSVIVSLFGDMAQAPGTRISGGTLTRIIEPIGIKPEAIRVALHRL 68 Query: 65 NKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLA 124 K+GW++ R+GR S + L++ G + +IY A P W LL++E + L Sbjct: 69 RKDGWIESDRMGRVSRHVLTEFGRAQSAAVTPRIY-ARTPVMAEHWHLLIAEDGNTQVLE 127 Query: 125 DVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRA 184 D+ + G +P+ A + LA+S Sbjct: 128 DIMLSHDYIPIGRNVALGSGTPTDHAG-------------------ALLVLAISPQTAPT 168 Query: 185 RVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDP 244 +++ E A +T + + R + + TP ++ ++ LL+H +RRVVL+ P Sbjct: 169 WLQDRLCPQELRASCQTLLAATRRVA-RSRPDGWTPTPLQSATLRTLLVHRWRRVVLRQP 227 Query: 245 LLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSE 281 LP P WAG R+ + + + + +S Sbjct: 228 DLPPAFYPPDWAGPACRESVMQLLDTLPRPSADTLSA 264 >UniRef50_Q72HH2 PhaN n=3 Tax=Thermus RepID=Q72HH2_THET2 Length = 260 Score = 167 bits (423), Expect = 4e-40, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 113/263 (42%), Gaps = 20/263 (7%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + S I +L+ + + + L A++ LGF E VR AL R K GW+ R G Sbjct: 1 MRARSTIFTLFVEYVYP-ERAARVRDLVAMMAALGFSEMAVRAALSRSAKRGWVVPKREG 59 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGL-DKSTLADVKKQLIWQGF 135 R ++Y+LSD+ R+ ++Y P WDG++LL+L EG D+ ++++ G+ Sbjct: 60 RAAYYALSDRVYWQVRQVRRRLY-GSLPPWDGRFLLVLPEGPKDRGERERFRREMALLGY 118 Query: 136 GALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQ 195 G L + L + LL G++ CF+ ++ + V + L E Sbjct: 119 GGLQSGVYLGVGADLEATRELLGFYGLS--ATCFQGELLGG------KEEVLRAFPLEEA 170 Query: 196 NAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHW 255 A Y P AF L+H R+++ DP LP+ELL + Sbjct: 171 KAGYGRLSALL---------GQSPEDPVEAFRHLTRLVHEARKLLFLDPGLPQELLGPDF 221 Query: 256 AGHTARQLCINIYQRVAPAALAF 278 G R+L ++ + + A F Sbjct: 222 PGPKVRRLFLSAREELRARAAPF 244 >UniRef50_B1N6G0 Putative phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=uncultured bacterium CBNPD1 BAC clone 67 RepID=B1N6G0_9BACT Length = 256 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 74/270 (27%), Positives = 107/270 (39%), Gaps = 20/270 (7%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 + L I VP SLI S++G + G + L L L L VRTAL Sbjct: 5 AALSALIAAHHGRVPPRTGSLIVSVFGALVLPAGEALRLSDLQEWLAALEIEPGLVRTAL 64 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS 121 RL +G L R G+ + Y LS + L+ A I+ P G LL+ E D Sbjct: 65 SRLVNDGTLLRERDGKAALYRLSARALKDFEAAGDLIFGRLLPRPTGDLDLLVIE--DTG 122 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA 181 A ++ +L+ GF LA +L+ + + ++ + A Sbjct: 123 RRATLRAELVAMGFVPLAANLLIRSAWAGRAAPEVRGCLALS------------LHANAD 170 Query: 182 LRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVL 241 L R E W L + Y I + TP A +L+L+H +RR+VL Sbjct: 171 LALRARELWPLEQLAGGYRAVIAHAEAV------QGGAFTPSEARLARLMLVHEFRRIVL 224 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRV 271 +DP LPE +LP W G AR + V Sbjct: 225 RDPFLPEAVLPRDWPGSPARLAFDAALRHV 254 >UniRef50_Q1GJJ7 PaaX-like protein n=9 Tax=Rhodobacterales RepID=Q1GJJ7_SILST Length = 301 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 102/284 (35%), Gaps = 39/284 (13%) Query: 8 IQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKE 67 I + S+I S GD +G + +L ++ LG +R AL RL K+ Sbjct: 29 ITALTEPDGLRVWSIIVSFLGDMAQDKGAGVSSAALTRVITPLGIKPEAIRVALHRLRKD 88 Query: 68 GWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGL--------- 118 GW + R GR SF+ L+ G + + +IY A W LL++ Sbjct: 89 GWTESQRRGRGSFHFLTPFGRQQSALVTPRIY-ARSTCETDAWTLLVAGTPDGLETLDAL 147 Query: 119 -DKSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLAL 177 D++ L ++ A A S L + H G + + Sbjct: 148 CDQTPLTSIRVNRHAAITPGPAMQHAAETSHMLVANLDVAHVPGWLQDDLFP-------- 199 Query: 178 SRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYR 237 Q+ PL + +L+P + ++ LL+H +R Sbjct: 200 ---------------EPLRQSCAALDQALAPL-----GSPPDLSPLQRACLRTLLVHRWR 239 Query: 238 RVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSE 281 R+ L+ P +P PA W+G + R + ++ LA + + Sbjct: 240 RITLRHPDVPRIFHPADWSGESCRTRVFALLDKLPQPELAEIED 283 >UniRef50_C4RH20 Putative uncharacterized protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RH20_9ACTO Length = 309 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 112/269 (41%), Gaps = 15/269 (5%) Query: 18 SGTSLISSLYGDSLSHR-GGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 L+ + +G+ + G I +L +LEG G R L RL + G L SR G Sbjct: 19 QPKQLLLAFFGEHVVDDATGPIRASALIHVLEGAGVAAPATRATLDRLVRSGILARSRSG 78 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDG-KWLLLLSEGLD--KSTLADVKKQLIWQ 133 R + +SL++ G+ + A ++ G W L+ + + ++ L W+ Sbjct: 79 RETLFSLTEHGMAVLCEATYRVRGPRPFDPQGSGWTLVTFSIPEGQRMLRHRLRSTLTWE 138 Query: 134 GFGALAPSLMASPSQ-KLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GF + L +P + LA L + + V+ F A+ L+ + V W + Sbjct: 139 GFAPIRDGLWLAPGEVDLAGSLEPLRQDLPPNAVVAFHAR---ELAGFPIGESVRAAWDI 195 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 + + FI + AA + P A ++ +L+ + ++ DP LP E + Sbjct: 196 EAIRSAHLAFIDVWS------DPAATTMAPS-ALTVRTMLVADWLALLRADPRLPAEFMD 248 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSE 281 A W + + I++++A A+ A +E Sbjct: 249 AQWPATQSAETYRRIHKKLAEASTAEFAE 277 >UniRef50_Q0RIQ5 Putative repressor n=1 Tax=Frankia alni ACN14a RepID=Q0RIQ5_FRAAA Length = 270 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 96/234 (41%), Gaps = 10/234 (4%) Query: 39 WLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKI 98 L LL G+ R L RL +G L+ R GR++ Y L + ++ Sbjct: 22 SGAGLVDLLATAGYAAGATRVGLSRLCADGSLERRRDGRQTSYRLGRQMAETVTSVGGRV 81 Query: 99 YR-AEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQT 155 WDG W ++L+ D +ST +K L + GFG L + + +V+ Sbjct: 82 ESFGRSVGWDGSWTIVLASVPDELRSTRRRMKSALAYLGFGRLRETTWVAARACEDEVKD 141 Query: 156 LLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKE 215 L+ +A V F + + A + A + CW L Y F+ F PL + Sbjct: 142 LVESLDLAGLVDVFVGR---PSALADVDAILHRCWDLGSLTQRYSAFVARFAPLCTAV-- 196 Query: 216 AADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQ 269 + D LT A + L H YR +V +DP LP E LPA R+ ++ Y Sbjct: 197 SRDALTGPDALLWWMRLTHDYRELVYRDPELPPEFLPAD--ARALRERVVDTYA 248 >UniRef50_C6D2L6 Putative transcriptional regulator, PaaX family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D2L6_PAESJ Length = 276 Score = 153 bits (387), Expect = 6e-36, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 12/245 (4%) Query: 35 GGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRA 94 G + L + E G + VR AL RL KEG+ + + R L +K +R+ A Sbjct: 22 GSGAAVSRLIEVYEARGISHQIVRNALSRLKKEGYAESAERSRYKATPLGEKFIRIIN-A 80 Query: 95 ESKIYRAEQPAWDGKWLLLLSEGL--DKSTLADVKKQLIWQGFGALAPSLMASPSQKLAD 152 + +Y E WDG+W +++ E ++ + +L+ GFG+L S+ SP + Sbjct: 81 KPGLYEKE---WDGQWCMVMFEIPESERRRRDSFRSELLQLGFGSLYKSVYVSPWDYRDE 137 Query: 153 VQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYE---TFIQSFRPL 209 V L + VA + +I + + W L E A+Y ++Q Sbjct: 138 VIRLGRQCEVAGYITVASTRI---VHNGITQEHCFRLWPLKELQALYRDKDRWLQEHLVP 194 Query: 210 VPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQ 269 V E + + F + L L + L+DP+LP+ LLP W G + + Sbjct: 195 VLKGLEHTGDEDGLQLFVLFLELGEIIAELGLRDPMLPDPLLPDDWTGKRQMKQFQGSLR 254 Query: 270 RVAPA 274 ++A A Sbjct: 255 QIAQA 259 >UniRef50_A9DZC9 PaaX domain protein n=4 Tax=Rhodobacteraceae RepID=A9DZC9_9RHOB Length = 263 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 104/268 (38%), Gaps = 25/268 (9%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 SL+ SL+GD G I L+ ++ L R AL RL +GWL ++GR Sbjct: 20 RVWSLMISLFGDLAQGNGDAIDGPVLSTIMAALDVRPEASRVALHRLRNDGWLQSRKVGR 79 Query: 78 RSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGA 137 S +SL+ +G + A +IY A P W ++++E + ++ L +GF Sbjct: 80 ISQHSLTAQGRAESAAASPRIYAA-PPDLSEPWQMVMTEENGR----EIDATLRAEGFIP 134 Query: 138 LAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNA 197 + P + S+ A +L L + T Sbjct: 135 VMPRVYVGRSESTAPKGSL-------------------PLRGETPPDWLRRAVEPTALEP 175 Query: 198 MYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAG 257 Y+ + + L L + E A ++ L++H +RR+ LK P LP L+ + W+G Sbjct: 176 EYDALLHALSTLRGTLACDSHMNALEIA-VLRCLIVHNWRRLALKHPALPGGLIRSDWSG 234 Query: 258 HTARQLCINIYQRVAPAALAFVSEKGET 285 + L + R AL ++ Sbjct: 235 YQCHLLVDQLLNRHPRPALQDLAAASAA 262 >UniRef50_A8LTJ1 Transcriptional regulator PaaX n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LTJ1_DINSH Length = 264 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 106/280 (37%), Gaps = 27/280 (9%) Query: 3 KLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALF 62 +QH S + S++GD I L + +G +R AL Sbjct: 5 PFPAIVQHLTGDRTPRVWSFLISVFGDLAQAPDARISAALLRQISAQIGIRPEAMRVALH 64 Query: 63 RLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKST 122 RL K+GW+D +R GR S Y L+D+G + A +IY P + WL + G + Sbjct: 65 RLRKDGWIDSARAGRTSAYFLTDRGRAQSAAASPRIY-GTGPGAETAWLAAFNPGQPGAH 123 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 + + S + ++ + +A V AL Sbjct: 124 QDE--------------AGVWLSATLLVSATRPATADAFVTP-----------LGPGTAL 158 Query: 183 RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLK 242 + M F ++ L PLL +A LT +++LL+H +RR+VL+ Sbjct: 159 PDWMTARICDATTVQMAADFARALAGLRPLLD-SAPGLTTLETTALRVLLVHGWRRIVLR 217 Query: 243 DPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEK 282 P+LP+ L PA W G R ++ R LA + Sbjct: 218 TPILPDHLFPATWQGPVCRDGVADLLARYPKRPLAELEAA 257 >UniRef50_C1RIT6 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RIT6_9CELL Length = 280 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 97/276 (35%), Gaps = 14/276 (5%) Query: 13 NAVPVSGTSLISSLYGDSLSHRGG-EIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLD 71 V L+ + G+ + G + L +L LG GE R AL R+ L Sbjct: 14 GEVRRRPEQLLLAFMGELMVGEGAAPLPAAILIGVLGELGAGEAATRAALTRMAGRRLLA 73 Query: 72 VSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDG-KWLLLLSEGLD--KSTLADVKK 128 R GR Y L+ + R+ A +++ + A G W L+ + + V+ Sbjct: 74 TVRTGRTVAYGLTPESERVLAEARGRVFDEDPFAPHGEGWTLVSFSVPESRRDVRHRVRA 133 Query: 129 QLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEE 188 QL W GFG L L +P + + D++ + +A R+ V Sbjct: 134 QLTWAGFGLLRDGLWIAPGEVDVAQALGGLQPDGRDDLELLAFRAHEVPGFSAARS-VRT 192 Query: 189 CWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPE 248 W L +E F + P + A L+ + ++ P LP Sbjct: 193 AWRLDAMRERHEQFQARWEGRDPDVPH---------ALCDVTALVADWLDLLRAVPRLPP 243 Query: 249 ELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGE 284 E L W G + ++ +A A A ++ + Sbjct: 244 EHLAPDWPGGRSVAAFRRLHAVLAEPARAELARRLA 279 >UniRef50_A3VFU0 PaaX domain protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VFU0_9RHOB Length = 261 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 99/279 (35%), Gaps = 26/279 (9%) Query: 8 IQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKE 67 I + P+ S++ ++ GD I L L+EG+G + +R AL RL ++ Sbjct: 7 IDRLLALGPLKVWSVVVTIMGDLCRAPEDRIEGPLLTRLVEGMGINNQALRVALHRLKRD 66 Query: 68 GWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVK 127 GW++ R GR S Y+L+ +G T IY A PA L+L + Sbjct: 67 GWIEAERDGRVSSYALTPEGRARTEAVRPVIYAAAPPAPVPVSLVLP------------E 114 Query: 128 KQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVE 187 + Q F P P + A L A V L AAL + Sbjct: 115 PTMATQDFIDALPDDTVFPGTRSALTTGPLDPALSDALVT--------TLDTAALPDWIA 166 Query: 188 ECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLP 247 E A Y Q+ L P ++L+ H +RR+ L+ LP Sbjct: 167 SVVISPEALADYTRLAQTLESLGPAPG------DLLTRTILRLIAFHHWRRMRLRHGTLP 220 Query: 248 EELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETS 286 + +L W G AR + AL + T Sbjct: 221 DLILGPDWPGAQARTAIARTLETYPRPALDALRAASTTP 259 >UniRef50_A1UBK1 PaaX domain protein, C-terminal domain n=11 Tax=Actinomycetales RepID=A1UBK1_MYCSK Length = 243 Score = 117 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 90/270 (33%), Gaps = 35/270 (12%) Query: 15 VPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR 74 + ++ S++ S+ L L L E VR AL R+ G L S Sbjct: 1 MRLTARSVVLSVL---LGAHPAWATASELIRLTADFDIREPTVRVALTRMVGAGDLVRSA 57 Query: 75 IGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWL--LLLSEGLDKSTLADVKKQLIW 132 G Y LSD+ L RR + I WDG W ++ S G D T A ++ L Sbjct: 58 DG----YRLSDRLLARQRRQDDAI-NPRPRRWDGTWTTLVITSVGTDARTRAALRNTLQD 112 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 FG L + P + VAD V A+ AA W L Sbjct: 113 NRFGELREGVWLRPDNLDTALPE-----DVADRVRVLHARDDEPADLAA------RLWDL 161 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 A + D++ R + + R +L DP+LP +LLP Sbjct: 162 PAWAAQGRRLL--------------DDMDTARDIPARFVTAAAIVRHLLTDPVLPADLLP 207 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEK 282 A W G R + A + + Sbjct: 208 ADWPGDELRTAYTAFAAELVERRDAQLRDA 237 >UniRef50_B7X5K7 Putative transcriptional regulator, PaaX family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X5K7_COMTE Length = 288 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 89/233 (38%), Gaps = 18/233 (7%) Query: 29 DSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFY-SLSDKG 87 D L R + ++ G GE VR L RL G V R GR + L Sbjct: 20 DLLVARAIPLSARAITQAAALFGIGENAVRVCLSRLISAG--KVDRPGRGLYLARLQPSH 77 Query: 88 LRLTRRAESKIYRAEQPAWDGKWLLLL---SEGLDKSTLADVKKQLIWQGFGALAPSLMA 144 L + + +P W G+WL L + DKS ++ L +GF +L P L Sbjct: 78 LAHIVDNWHRREQLRRP-WHGQWLALQDASASKADKSLWRRHQRALGLRGFASLGPQLHI 136 Query: 145 SPSQKL---ADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYET 201 P + Q L G+A + L A + W+ A ++ Sbjct: 137 RPDNLRITFTEFQVELESLGIASGSCLMQIHQIDKLHEAQ----ARKLWNTQALEAAHKH 192 Query: 202 FIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 +I ++ + D++ A LLL +L+DPLLPEEL+P+H Sbjct: 193 WI----SVILSSHQRLDDMPLPSAVRESLLLGRSAIAHLLRDPLLPEELMPSH 241 >UniRef50_A4T1R0 PaaX domain protein, C-terminal domain n=20 Tax=Actinomycetales RepID=A4T1R0_MYCGI Length = 244 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 85/252 (33%), Gaps = 35/252 (13%) Query: 13 NAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDV 72 A ++ S++ S+ L L L G E VR AL R+ G L Sbjct: 4 PANRMTARSVVLSVL---LGAHPAWATAAELIRLTSDFGIRESTVRVALTRMVSAGDLVR 60 Query: 73 SRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWL--LLLSEGLDKSTLADVKKQL 130 S G Y LS + L RR + + + WDG W ++ S G D T A ++ L Sbjct: 61 SEDG----YRLSGRLLARQRRQDDVL-EPRRGEWDGLWTTLVITSVGADARTRAHLRNTL 115 Query: 131 IWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECW 190 F L + P+ + A + + +A+ W Sbjct: 116 QNHRFAELRDGVWMRPANVEVQL-----GANITEKARILQARDER------PAELATHLW 164 Query: 191 HLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 LT ++ E+ + + R +L DP+LP+EL Sbjct: 165 DLTGWAVDGRRLLK--------------EMDDAHDVPTRFVAAATIVRHLLTDPVLPDEL 210 Query: 251 LPAHWAGHTARQ 262 LPA W G R Sbjct: 211 LPADWPGADLRA 222 >UniRef50_Q28UN6 PaaX-like protein n=1 Tax=Jannaschia sp. CCS1 RepID=Q28UN6_JANSC Length = 265 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 27/269 (10%) Query: 3 KLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALF 62 + ++ P+ S++ + GD E+ +L++ +E +G + +R AL Sbjct: 7 PIRPLVEALNAEAPLKLWSVLVTCLGDVSRDGVIEVSGVALSSFVERMGLQPQAMRVALH 66 Query: 63 RLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKST 122 RL ++GW++ R+GR F+ LSD L TR +IY W L Sbjct: 67 RLKRDGWVESRRLGRVGFHRLSDSALTQTRAVAGRIYGPGAGPA--PWHLAGMPPDAP-- 122 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 L P A + E + A S L Sbjct: 123 -----------------DGLSLLPDTLSATPISRRFALICGPLEDVPEDWLLTAPSGRGL 165 Query: 183 RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLK 242 V++ A ++ ++ + + T F +++L++H +RR++L+ Sbjct: 166 PVWVQDVVVEAGCEAEFKALERTLAQIDKVPD------TRLERFTLRVLVLHAWRRLILR 219 Query: 243 DPLLPEELLPAHWAGHTARQLCINIYQRV 271 E L A + R + ++ Sbjct: 220 SSPAAEAALGGARAEISCRARVHQLLDQL 248 >UniRef50_A6GMQ6 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GMQ6_9BURK Length = 263 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 99/268 (36%), Gaps = 26/268 (9%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + SLI L L+ +G + A R AL RL+ EG ++ + Sbjct: 4 PTAKSLILDLL---LASKGRPLSAKQAIAACGIFDISVNNTRVALVRLSAEGLIESA--- 57 Query: 77 RRSFYSLSDKGLRLTRR-AESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVK---KQLIW 132 R+ Y L+D L A + WDG ++++ +E L +S + + L+ Sbjct: 58 GRALYQLTDDAHTLADDVAAWRTRSTRVRPWDGSYIVVQAEKLSRSEAKQQRARARALLM 117 Query: 133 QGFGALAPSLMASPSQKLA---DVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEEC 189 GF L L P+ V+ L++ G+ + FEA+ L+ R+ Sbjct: 118 LGFQPLNEHLFIRPNNIEDTLQSVRDRLYKLGLEKDAPVFEARDFD----LDLQRRIATL 173 Query: 190 WHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 W+ E Y + R + + L PE A LL + V+ DP Sbjct: 174 WNPRELETNYAQLEKKMRTWLDR----SGSLEPEVAARESFLLGGTAIKHVVYDP----- 224 Query: 250 LLPAHWAGHTARQLCINIYQRVAPAALA 277 LPA W AR+ + V A + Sbjct: 225 FLPAEWVNVQARERFLGAVDEVDQAGMR 252 >UniRef50_A4A7F5 PaaX-like protein n=2 Tax=unclassified Gammaproteobacteria RepID=A4A7F5_9GAMM Length = 272 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 79/214 (36%), Gaps = 15/214 (7%) Query: 44 AALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQ 103 +R AL RL K G+L GR Y++ D+G L+ A + E+ Sbjct: 34 VKWGRLFDIDPTAMRVALGRLVKAGFLRSVVRGR---YAIGDRGRVLSETARRWVSAEER 90 Query: 104 -PAWDGKWLLLLSEGL---DKSTLADVKKQLIWQGFGALAPSLMASPSQKL---ADVQTL 156 AWDG+WL++ + L D+S L + L GF L L P+ A+ + Sbjct: 91 VGAWDGRWLMVHTAHLGRRDQSALKLRDRALQLVGFAELRSGLWCRPANYRESSAETRAR 150 Query: 157 LHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEA 216 L E G+ + I A L +R + W Y Q+ + Sbjct: 151 LRELGLGEEAIILRADSLLLETRE-----LAALWPRQALEEAYAVLTQAMIDSMARGDAD 205 Query: 217 ADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 + E LL R + DPLLP+ + Sbjct: 206 DTDAGKEALARETFLLGEAVIRQINGDPLLPDAM 239 >UniRef50_B8FMU0 Putative transcriptional regulator, PaaX family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMU0_DESAA Length = 274 Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 19/237 (8%) Query: 22 LISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFY 81 LI S+ +S + + + A+ GF +R RL ++G L+ G Y Sbjct: 10 LIVSIL--HVSD-NKAMPIKDMIAIGRLFGFTGNVIRVTTARLVRDGRLENDERG---LY 63 Query: 82 SLSD--KGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALA 139 + D + A + WDG W+ L+ K L GF Sbjct: 64 RIKDMDTPISRFVNAWKQG-EDRVKNWDGSWICCLAPNGTAGRRKKNAKALELPGFREGL 122 Query: 140 PSLMASPSQ---KLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQN 196 P L P+ L ++ LL G+ F + + A + + W + E Sbjct: 123 PGLWVRPANLTMDLPSLKELLVHQGMDPAGELFVGRDFSEKTAAQWQKFL---WPVEELV 179 Query: 197 AMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPA 253 E ++ ++ + + + +H +++KDPLLPEE++P Sbjct: 180 RDMEKALERIEKSKARVQGLPPDSALMETYLVGTETVH----MLVKDPLLPEEIMPP 232 >UniRef50_B1MJ58 Putative repressor in the phenylacetic acid catabolism n=3 Tax=Actinomycetales RepID=B1MJ58_MYCA9 Length = 286 Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 62/192 (32%), Gaps = 7/192 (3%) Query: 35 GGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRA 94 I G L + LG ++ VR + RL EG GR++ + Sbjct: 24 DATIATGELYDVANILGMSDQQVRLCIKRLVAEGRFTQEGRGRKAILHATGATRNTLEPD 83 Query: 95 ESKIY-----RAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGALAPSLMASPS 147 + WDG W L + ++ ++++++ G + L + Sbjct: 84 LDFVRYMYQQDRGLAPWDGGWHLTAFAVPESARTARDAMREEIVRLGGAPIQGGLYVCAN 143 Query: 148 QKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFR 207 + V GVA++V F R E W + + + Sbjct: 144 AWESRVGAAAERLGVAEHVTMFTTTDLAIGGETGARELAERLWPIDAIAERHRRLLAVAE 203 Query: 208 PLVPLLKEAADE 219 L+P+L+ A+ Sbjct: 204 GLLPVLRTASPT 215 >UniRef50_D0L5H2 PaaX domain protein protein domain protein n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L5H2_GORB4 Length = 244 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 83/262 (31%), Gaps = 37/262 (14%) Query: 15 VPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR 74 PVS S + SL + + + + + G E R AL R+ G L Sbjct: 7 PPVSARSAVLSLLLGAQPP---TLNVREIVGAMGLFGISESATRVALTRMVAGGDLLRHE 63 Query: 75 IGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLAD--VKKQLIW 132 S Y+LS++ LR + E + W G W + + ++ ++ ++ Sbjct: 64 ----SAYTLSERLLRRQEQVEP----PARRRWSGSWEMAVVTTTGRAAADRVALRTEMTR 115 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 L + P+ + L E + A W+L Sbjct: 116 HRIAELREGVWTRPANLVHHWPDRLRE----------VSTFFEARPDGEPAELAARLWNL 165 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 + ++ + + F + +H + DPLLP ELLP Sbjct: 166 DAWATRGQAYLDALAAVH----------DEPTRFVTMVAAVHH----LQTDPLLPTELLP 211 Query: 253 AHWAGHTARQLCINIYQRVAPA 274 AHW G + + +A Sbjct: 212 AHWPGERLATIYADYRAWLAAM 233 >UniRef50_A6GRV6 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GRV6_9BURK Length = 269 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 92/248 (37%), Gaps = 23/248 (9%) Query: 26 LYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSD 85 + G L+ +G ++ + G E R A+ RL EG L + G Y+L Sbjct: 11 ILGLMLAGKGRQVKAAHIVLACSLFGVSENSARVAMARLVAEGQLKSAGRG---IYTLGK 67 Query: 86 KGLRLTRRAESKIYRAEQP-AWDGKWLLLLSEGLDKSTLADV---KKQLIWQGFGALAPS 141 + + + R AWDG + + + L +S + +K L GF Sbjct: 68 QAAFTGQDIQRWSNRLTATCAWDGSFYAVFTAHLGRSNRKQLLLREKALALLGFREFEQG 127 Query: 142 LMASPSQK---LADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAM 198 L P+ L +Q L GV NV+ FE + S A +++++ W + + + Sbjct: 128 LFLRPANLKLGLTGIQEKLTAQGVEKNVLTFE----MKPSSLAQTSQIQKLWEIRKLERL 183 Query: 199 YETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGH 258 Y + + + E A+ + I+ RR DP LLPA W Sbjct: 184 YLSHTKKLNDWMQGYSRMKLEKAARDAYLVGSQAIYEVRR----DP-----LLPAEWINA 234 Query: 259 TARQLCIN 266 ARQ Sbjct: 235 AARQQFFE 242 >UniRef50_B6AVQ6 PaaX domain protein, C-terminal domain, putative n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6AVQ6_9RHOB Length = 278 Score = 90.8 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 84/244 (34%), Gaps = 21/244 (8%) Query: 13 NAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDV 72 S LI SL R + L L A E LG +R RL KE L Sbjct: 16 RERRPSAKRLILSLL---SQPRMATLSLRQLVAWGELLGQKPAAIRVTAGRLVKEELLKT 72 Query: 73 SRIGRRSFYSLSDKGLRLTRRAESKIYR-AEQPAWDGKWLLLLSEGLDKSTLADVKKQ-- 129 R G Y++ GL L +A + W G W+ + + L K+ +V+K+ Sbjct: 73 VRRG---VYTIGPNGLVLRDKASEWMTTLDRIRGWKGGWICVHTAHLGKANRRNVRKRER 129 Query: 130 -LIWQGFGALAPSLMASPSQKLADVQTL---LHEAGVADNVICFEAQIPLALSRAALRAR 185 GF L + P + + L + G+ + I + + A Sbjct: 130 AFRLFGFKELVDGVWIRPDNLVCTPPQMYVDLCKLGLETDAILLRSDVIE--HGQPHSAL 187 Query: 186 VEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPL 245 V W NA YE ++ + L++ F L+ R + DPL Sbjct: 188 V--LWGSDTLNANYEKGVELLQHSEQKLRQQDLHTITRETF----LIGEHVIRQINADPL 241 Query: 246 LPEE 249 LP + Sbjct: 242 LPTD 245 >UniRef50_A0PWR1 Putative uncharacterized protein n=2 Tax=Mycobacterium RepID=A0PWR1_MYCUA Length = 268 Score = 90.8 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 96/281 (34%), Gaps = 25/281 (8%) Query: 8 IQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKE 67 ++ + P+S S+++S L + + L A+ G + RT L+R+ Sbjct: 9 VRRLIGNRPLSARSVLAS---ALLGADQARLTVAELVAVASLFGISDGAARTCLWRMVSS 65 Query: 68 GWLDVSRIGRRSFYSLSDKGLRLTRRAES--KIYRAEQPAWDGKWLLLLSEGLDKST--L 123 G L Y+L+ L +R + +I +WD W L + +S Sbjct: 66 GELTS----GEGSYALAGHLLERRQRVDEASRIADTAVGSWDRTWELAVVSLDRRSAADR 121 Query: 124 ADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALR 183 +++K + L + P ++ +V+ + + Sbjct: 122 LELRKAAMALHLAELREGVWIRPDNLDP------QRLPISRSVLDRQCIHFHGATTDISA 175 Query: 184 ARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKD 243 + + L E A IQ+ + F + + ++ R + +D Sbjct: 176 DKASSLFSLDEWAANALALIQAMDAELDRSSRDVSAQRSSYQFALSIAVV----RHLQRD 231 Query: 244 PLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGE 284 PLLP EL+ W GH R + Y R+ A +S Sbjct: 232 PLLPAELIGDDWPGHPLR----STYLRLDEAFKRRMSHAFR 268 >UniRef50_C0ZNL2 Putative uncharacterized protein n=2 Tax=Rhodococcus erythropolis RepID=C0ZNL2_RHOE4 Length = 287 Score = 90.4 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 88/247 (35%), Gaps = 12/247 (4%) Query: 35 GGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRA 94 G + +L A + LG ++ VR + RL EG GR++ + K LR Sbjct: 18 DGTVDGRTLYATADALGKTDQQVRLCIKRLVTEGKFTQEGRGRQATLRATPKALREMEPD 77 Query: 95 ESKIY------RAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGALAPSLMASP 146 + R WDG W L + + ++ ++++ G + L SP Sbjct: 78 VEFVRLAYQQDRDTVTPWDGYWHLAGFAIPESSRKARDALRTRVVYLGGALVQGGLYVSP 137 Query: 147 SQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSF 206 ++ E V ++ + + W L + YE + Sbjct: 138 HAWEPYIRDAAAELDVEQHLSSLTTRDLKVGMLEDPVKIAAQLWPLDQIADGYERLLDVA 197 Query: 207 RPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCIN 266 + L+ + A + + L + R + DPLLP ELLP +W G AR + Sbjct: 198 TARLHKLQNSPGT----DAVTMTIELAAEFTRAMEPDPLLPPELLPTNWIGTRARSITAQ 253 Query: 267 IYQRVAP 273 + +A Sbjct: 254 CWTLLAQ 260 >UniRef50_A3N453 Conserved domain protein n=24 Tax=Burkholderiales RepID=A3N453_BURP6 Length = 278 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 88/259 (33%), Gaps = 23/259 (8%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + LI L ++ G + + G E VR AL RL E ++ + G Sbjct: 4 PTARHLILDLL---VAKDGEPLQVREAIIACRLFGLTENSVRVALARLAAESLVEGAERG 60 Query: 77 RRSFYSLSDKGLRLTRRAES-KIYRAEQPAWDGKWLLLLSEGL---DKSTLADVKKQLIW 132 Y L + L+ + + + W G +L++ L D++ LA ++ L Sbjct: 61 ---SYRLGPSAVELSEELTAWRTVESRLRRWSGAYLMVSCISLGRVDRTALARRERALEM 117 Query: 133 QGFGALAPSLMASPSQKL---ADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEEC 189 GF SL P V+ L + GV F A A AR+ Sbjct: 118 LGFREWDKSLYVRPDNIAGNVDSVRRRLTKLGVEPAAAVFVAMGFD----APQEARIRAL 173 Query: 190 WHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 W + Y T + E ++ AF LL R V+ DPLLPE Sbjct: 174 WDGDALSDTYRTLGAQLEDWLARAPELDLDVAAREAF----LLGGKAIRQVVFDPLLPEP 229 Query: 250 LLPAHWAGHTARQLCINIY 268 + A A C Y Sbjct: 230 FV--DVAARAAFIECARRY 246 >UniRef50_C2AK69 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AK69_TSUPA Length = 277 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 55/253 (21%), Positives = 90/253 (35%), Gaps = 12/253 (4%) Query: 29 DSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGL 88 +++ I G L + LG ++ VR A+ RL EG S GR + S +D Sbjct: 13 EAMLRADATIDAGELFDVAALLGMSDQQVRLAIKRLVTEGRFTQSGRGRSAVLSATDSTR 72 Query: 89 RLTRRAESKIY-----RAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGALAPS 141 + + WDG W L + + ++ ++ G + Sbjct: 73 ATIEPDRDHVRLMYAQDRGRAPWDGVWHLAGFGVPESAREARTGLRDAILALGGAPVQGG 132 Query: 142 LMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYET 201 L AS ++ + E G + + L + A A W L E + Sbjct: 133 LYASAHPWEGAIRAVAEELGAGLYLTTL-STTDLDVGDARGPAAAARLWPLNELTDGHRR 191 Query: 202 FIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTAR 261 R ++ + A + + L+ + R DPLLP ELLP WAG AR Sbjct: 192 LAAQARDVLARVGGA----DHADRLAMTVTLVTEFARAHEADPLLPPELLPPDWAGTRAR 247 Query: 262 QLCINIYQRVAPA 274 L ++ +A A Sbjct: 248 ALADQAWRALAAA 260 >UniRef50_B6IPS7 Putative uncharacterized protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IPS7_RHOCS Length = 292 Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 85/268 (31%), Gaps = 39/268 (14%) Query: 13 NAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDV 72 A +S +LI L D+ S L G +RTAL RL +EG + Sbjct: 12 EAGAISARTLILDLM-DTGSPPD--FSTRDLVLAGAAFGLEATGIRTALTRLRQEGRVRT 68 Query: 73 SRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVK---KQ 129 GR + + ++ + Q WDG WLL ++ +++ + + Sbjct: 69 LDRGRHAIGAKAEPLQHRILGWREV--QGRQRPWDGGWLLAVAGPQERANRTLWRHTVRA 126 Query: 130 LIWQGFGALAPSLMASPSQK-----------------------LADVQTLLHEAGVADNV 166 L +GF ++ P ++ L A ++ Sbjct: 127 LDLEGFAEAETNVWVRPDNLEGGLEGGLEGGLEGGLEGGLEGGATAMRRRLLALDAAPSL 186 Query: 167 ICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAF 226 + A AR W + A + ++ L +L A Sbjct: 187 LLVRATALDDERE----ARFRTLWPVAGLAASHAGLVRRLAESAARL----PDLPLVEAA 238 Query: 227 HIQLLLIHFYRRVVLKDPLLPEELLPAH 254 LL R +L+DPLLPE L P Sbjct: 239 AECLLTGRQAIRAILRDPLLPEALCPPD 266 >UniRef50_D0SVR1 Predicted protein n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SVR1_ACILW Length = 262 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 91/254 (35%), Gaps = 26/254 (10%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 ++ LI L + + + + + E LG + +R A+ RLN+E + G Sbjct: 5 LNARHLILDLL---YASKNSTLSIKRILTAAELLGISDNGIRVAVARLNQENVIQAVERG 61 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGL---DKSTLADVKKQLIWQ 133 + L K W+GK++L+ + L D++ L+ +K L + Sbjct: 62 --VYQLLEKKFDTSFISLNKHPDMQTATTWNGKYVLVYTGTLGRVDRTALSKREKALRYY 119 Query: 134 GFGALAPSLMASPSQK---LADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECW 190 GF L ++ P L+ ++T + + G+ + F+ + + V + W Sbjct: 120 GFQELEQNVFIRPDNLTLNLSPLKTAVIQFGLDPDARFFQISQLESETE------VRDLW 173 Query: 191 HLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 + + Y + + E LT A L + DP L Sbjct: 174 DIEALHQTYHAV----QHDINDWFENYQNLTLADAAKSAFYLGKSALFSLRADP-----L 224 Query: 251 LPAHWAGHTARQLC 264 LPA W ARQ Sbjct: 225 LPAEWIDTDARQQF 238 >UniRef50_B4RT35 PaaX-like protein n=4 Tax=Alteromonadales RepID=B4RT35_ALTMD Length = 266 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 86/251 (34%), Gaps = 24/251 (9%) Query: 8 IQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKE 67 +Q A+ PV L+ L G S ++ S + G E +R L RL Sbjct: 1 MQQAIVKKPV-ARKLLLKLLG---SRENIQMNAASAVRVGALFGISENNIRVTLTRLQSM 56 Query: 68 GWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQ-PAWDGKWLLLLSEGLDKSTLADV 126 + + G +Y+L + G + + + +W W++ + L KS Sbjct: 57 QLITLVERG---YYALGENGKQFAKEISQWRNAEDSLMSWGNDWVVAQTNTLPKSDKKQQ 113 Query: 127 K---KQLIWQGFGALAPSLMASPSQKLA---DVQTLLHEAGVADNVICFEAQIPLALSRA 180 + + L G L + P+ L V+ L G++ V+ F A Sbjct: 114 RTNERALKLVGMRKLVSDMYIRPNNILDGAKGVRGKLQTLGLSKKVMVFSATDFEDK--- 170 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYR-RV 239 + + E W + +Y + + + L E A ++ R+ Sbjct: 171 -MHNKAMELWRQDDLEGLYRNGCEE----IEQSLKHLHSLPLEEATKESYVVGDSALYRL 225 Query: 240 VLKDPLLPEEL 250 V DPLLP L Sbjct: 226 VF-DPLLPSPL 235 >UniRef50_Q0C353 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C353_HYPNA Length = 268 Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 72/215 (33%), Gaps = 12/215 (5%) Query: 40 LGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKI- 98 +GSL +R A RL K+G L+ G Y K LTRR + Sbjct: 26 IGSLIHAGALFDIEPATMRVAATRLLKDGLLESPERG---VYVPGRKAQALTRRVQQWQD 82 Query: 99 YRAEQPAWDGKWLLLLSEGLD---KSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQT 155 ++ AW+G WL+ ++ L + L ++ L G+ L P+ ++ Sbjct: 83 VASKVVAWNGDWLVAMTHHLGRRDRRQLRTRERALALFGYQEAEAGLWVRPANLARAIEA 142 Query: 156 LLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKE 215 + L +S + W Y I + + + Sbjct: 143 HREDLVGIGADATMPVLRVLEVSAPDIGGWPG-LWSAQALETSYREAISA----MTESLK 197 Query: 216 AADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 LT A LL+ R + DPLLP +L Sbjct: 198 GLPGLTVAEAARETLLIGQAAIRAINFDPLLPPQL 232 >UniRef50_C0ZMY9 Putative uncharacterized protein n=2 Tax=Rhodococcus erythropolis RepID=C0ZMY9_RHOE4 Length = 271 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 80/242 (33%), Gaps = 18/242 (7%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 G S + + + E L E +G VR A RL +E L + G Sbjct: 13 RGMSATRVVLDLATASPDTEFSTAVLTRAGEIVGVSASSVRVATGRLCRENKLRRTARG- 71 Query: 78 RSFYSLSDKGLRLTRRAES-KIYRAEQPAWDGKWLLLLSEGLDKSTLADVKK---QLIWQ 133 Y L+ G+ E + WDG W+ + L +S ++ L Sbjct: 72 --TYVLNPDGIPTYSEVEGWRTRTDRIRPWDGTWIAVEHSALKRSDRTAARRHDQALRLA 129 Query: 134 GFGALAPSLMASPSQKL---ADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECW 190 G+ P+L P+ L + L G A E + +R W Sbjct: 130 GYEEWKPTLAVRPNNLLGGTDSARRTLRRLGTAPESAVMEIAHLAPEDDSTIRTL----W 185 Query: 191 HLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 + I R + + ++ E A L L V++++PLLPEEL Sbjct: 186 NSEALLVD----IAEAREALTQAQTRLATISREEAARESLALGSAVIAVIVRNPLLPEEL 241 Query: 251 LP 252 P Sbjct: 242 EP 243 >UniRef50_C7ACF7 Putative regulatory protein (Fragment) n=1 Tax=Rhodococcus opacus RepID=C7ACF7_RHOOP Length = 112 Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 35/82 (42%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + LI +++G + + S+ L+ LG VR+++ RL + L+ R Sbjct: 31 LQPRELIVTIFGLYARAESNWLSVASVVRLMSHLGVDGSAVRSSISRLKRRETLEAHRHD 90 Query: 77 RRSFYSLSDKGLRLTRRAESKI 98 + YSLS L + +I Sbjct: 91 GAAGYSLSKPTLDALAEGDVRI 112 >UniRef50_B7GXE1 PaaX-like family protein n=15 Tax=Acinetobacter RepID=B7GXE1_ACIB3 Length = 266 Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 81/259 (31%), Gaps = 20/259 (7%) Query: 12 VNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLD 71 + ++ LI L+ S ++ + + + E +R A RL EG + Sbjct: 1 MKNTKINARHLIIDLFLSSAYP---QLSIKQILVAAKLFNLSENGIRVATTRLLNEGMIQ 57 Query: 72 VSRIGRRSFYSLSDKGLRLTRRAESKIYR-AEQPAWDGKWLLLLSEGL---DKSTLADVK 127 G Y LS + ++ + W +L + + L D++ L + Sbjct: 58 SVERG---IYQLSPSAKDWAKVILNRKNGIKQTKEWQQHYLAVFTGTLGRIDRTALKKRE 114 Query: 128 KQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVE 187 + L GF L + P + E +A + I + L+ + Sbjct: 115 RALRQFGFKELETGIYIRPDNLAYSFEKTCDELVLAGLEKEAKICIIQHVDSTTLKQ-IF 173 Query: 188 ECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLP 247 W + YE + + E A LLL +++ DPLLP Sbjct: 174 SLWDTKQLEKNYE----MYSRDITHWLENYAHSPLNDAAVKALLLGRETIALLMNDPLLP 229 Query: 248 EELLPAHWAGHTARQLCIN 266 + +AR Sbjct: 230 APFV-----NESARNQFAQ 243 >UniRef50_A6WC05 Putative transcriptional regulator, PaaX family n=2 Tax=Actinomycetales RepID=A6WC05_KINRD Length = 263 Score = 70.0 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 77/253 (30%), Gaps = 23/253 (9%) Query: 29 DSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGL 88 ++ GE+ L + G ++ VR A+ RL G ++ GR L+ G Sbjct: 14 EAFLPLDGEVGLDLVYGTANAAGLADQPVRLAIRRLVAAGDVEQRGRGRAGTLRLTGAGR 73 Query: 89 RLTRRAESKIYRAE-----QPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGALAPS 141 R + A + WDG W LL + ++ +++L G ++ Sbjct: 74 AQLDRDRLALRLARAQDTGRAPWDGSWHLLAVSVEESARAVRDAWRRELSAVGAAPVSTG 133 Query: 142 LMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYET 201 L S A L +++ + A E W Sbjct: 134 LHVSAHDLSA-----LLATADRRHLVLATTDRLEVHGTSDPLALAERLWPAAP------- 181 Query: 202 FIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTAR 261 + + P QL L R V DPLLP EL P W R Sbjct: 182 -VDRAYDALADALARPPAPDP---LVQQLRLADALERAVRDDPLLPPELRPQPWRPARLR 237 Query: 262 QLCINIYQRVAPA 274 + + +A Sbjct: 238 RRWYAAWTALAEQ 250 >UniRef50_UPI00005103A0 hypothetical protein BlinB_17434 n=1 Tax=Brevibacterium linens BL2 RepID=UPI00005103A0 Length = 294 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 71/232 (30%), Gaps = 9/232 (3%) Query: 34 RGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRR 93 R + + +L+ G+ V L R+ L ++GR + Y L ++ L Sbjct: 35 RAQGLPGPVIVGILDEHGYSSSSVHNQLVRMVHRSILTSEKVGRVTVYRLGERILSGFMD 94 Query: 94 AESKIYRAEQPAWDGKWLLLLSEGLDKST--LADVKKQLIWQGFGALAPSLMASPSQKLA 151 E P +DG + L + S + G+ L P L+ S + Sbjct: 95 IA---GDREAPTFDGCFHSALYSIPETSRMLRDRFQYVARMLGYRQLRPGLLLSFADLSY 151 Query: 152 DVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVP 211 ++ L E + S+ A + L + + L Sbjct: 152 ELSAQLPEVAEPGWCEFATIR---PESQEAAVRMTSRAFDLEAASLQLPRLEDALAALSL 208 Query: 212 LLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQL 263 ++ P+ + + + V+ P+LP L+ R L Sbjct: 209 NDRQPGAG-HPDMSLVKFFDIYFQVAQAVMSHPILPPALVGPDQPALRFRTL 259 >UniRef50_B5JMA2 PaaX-like protein C-terminal domain n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMA2_9BACT Length = 263 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 80/229 (34%), Gaps = 24/229 (10%) Query: 35 GGEIWLGSLAALLE-GLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYS----LSDKGLR 89 G E+ +A + + G R L RL K G + V + L++ G+ Sbjct: 20 GLELASAQIARICQNTFGGSNRSYMNLLRRLEKSGLITVEPEDSDAKTRWVPKLTNAGIT 79 Query: 90 LTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS--TLADVKKQLIWQGFGALAPSLMASPS 147 + + A + WDGKW LL + + ++K L FG L S+ S Sbjct: 80 SNSQPSPR--TAWEVEWDGKWSLLTFDLPTHAGKARKQLRKWLTSLRFGKLQGSVWVS-H 136 Query: 148 QKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLT---EQNAMYETFIQ 204 +KL++++ L E + + VE+ W L A Y F++ Sbjct: 137 RKLSEIENSLEEIELDPESVVCIEGSFWNAPNQDH--YVEKAWQLDRMQALYAEYLRFVE 194 Query: 205 SFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPA 253 E E + + + V DPLLP EL P Sbjct: 195 R---------ETGTETSLLDYQKWRTCEKQLWSAAVELDPLLPRELWPQ 234 >UniRef50_B5JH73 PaaX-like protein C-terminal domain n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH73_9BACT Length = 255 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 18/194 (9%) Query: 82 SLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLS--EGLDKSTLADVKKQLIWQGFGALA 139 L++ G+ + R + WDG W L+ + ++ + L + FG L Sbjct: 71 RLTEAGINNVTDEIDPV-RRWEADWDGVWRLITFDLPSASRKRRTELNQWLQRRRFGGLQ 129 Query: 140 PSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMY 199 S+ SP A + + FE + R V E W N Y Sbjct: 130 GSVRVSPIFDEAWKAEIEGLKIPPSCMALFEGK---PFGLNEDRDIVREGWDFKAINEAY 186 Query: 200 ETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHF---YRRVVLKDPLLPEELLPAHWA 256 E I R + + ++ L +R DP LP+ LLP ++ Sbjct: 187 EKLISFLR---------SRPMPDSDEARARIWLEEENTLWRVAFELDPFLPKALLPDNYR 237 Query: 257 GHTARQLCINIYQR 270 G A +L +++++ Sbjct: 238 GKEAFELRASVFRK 251 >UniRef50_Q07SC0 PaaX domain protein, C-terminal domain n=2 Tax=Proteobacteria RepID=Q07SC0_RHOP5 Length = 276 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 81/242 (33%), Gaps = 21/242 (8%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + L+ +L + G + A E G R AL RL G +D + G Sbjct: 7 PAPRHLLMNLL---RAADSGSLSAAEAVAAGELFGISGNATRVALARLAAAGLVDATTRG 63 Query: 77 RRSFYSLSDKGLRLTRRAES-KIYRAEQPAWDGKWLLLLSEGLDK---STLADVKKQLIW 132 Y L G+ L S + + AW GKW+ +L+ GL + + + L Sbjct: 64 ---TYRLGQAGIALDTEVSSWRDAESRVVAWSGKWIAVLTAGLPRTDRAAWRARDRALSL 120 Query: 133 QGFGALAPSLMASPSQKL---ADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEEC 189 G L L P V+ L GV D F A + Sbjct: 121 LGLRELDSGLFVRPDNLQGGVTSVRLRLGALGVDDETPVFGADQFDRKREQQ----ARKL 176 Query: 190 WHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 W + E Y + + + + + +F LL R ++ DPLLP+ Sbjct: 177 WDVDELTRFYRDGSEQLEKWLKRSNRLSQGVAAKESF----LLGDHAIRQLVFDPLLPDP 232 Query: 250 LL 251 L+ Sbjct: 233 LI 234 >UniRef50_B5JQS9 PaaX-like protein C-terminal domain n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQS9_9BACT Length = 248 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 58/164 (35%), Gaps = 17/164 (10%) Query: 105 AWDGKWLLLLSEGL--DKSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGV 162 W G W L + ++ + + L FG L SL ++K D T L + Sbjct: 81 DWSGNWRTLTFDLPADERKERKRLNRWLQENKFGHLQGSLWL-TARKYEDWSTQLGSLNI 139 Query: 163 ADNVICFEAQIPLALSRAALRARVEECWH---LTEQNAMYETFIQSFRPLVPLLKEAADE 219 + F PL AL VE+ W + Y F+++ P+ Sbjct: 140 DPRSVIFIEGKPLGNLTDAL--IVEKAWDFTHIANLQEEYLRFLENRTPIAAQFSS---- 193 Query: 220 LTPERAFHIQLLLIHF-YRRVVLKDPLLPEELLPAHWAGHTARQ 262 + F +R V+ DPLLP L PA++ G Q Sbjct: 194 ----QDFAAWFRDESELWRSVMSSDPLLPSPLHPANYQGQLCWQ 233 >UniRef50_D1A2H2 Putative transcriptional regulator, PaaX family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A2H2_THECD Length = 154 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 28/78 (35%) Query: 223 ERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEK 282 A + L++ DP PEELLP W A ++ +Y P A V + Sbjct: 75 AEALRARTELMYDRLHFPGLDPKPPEELLPDDWPRRRAHEVFGELYDAFGPPAEIRVRQT 134 Query: 283 GETSVGELPAPGSLYFQR 300 S EL + R Sbjct: 135 VARSAPELAPLVRHHTHR 152 >UniRef50_B1ZX33 Putative transcriptional regulator, PaaX family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZX33_OPITP Length = 252 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 5/107 (4%) Query: 100 RAEQPAWDGKWLLLLSEGLDKST--LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLL 157 +WDG+W + L + ++ ++++L GFG L S+ SP + Sbjct: 84 AQWDRSWDGRWRVALFDIPEQRRALRVKLRRRLAELGFGYLQNSVWVSPDPCERLQALVR 143 Query: 158 HEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQ 204 +G A++ EA+ + A + V+ W N Y +++ Sbjct: 144 DLSGEAESFSFIEARPCAGETDADV---VKGAWSFPAINRNYANYLE 187 >UniRef50_D1JAR6 Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JAR6_9ARCH Length = 206 Score = 44.2 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 16/95 (16%) Query: 45 ALLEGLGFGERFVRTALFRLNKEGWLDV----SRIGR-RSFYSLSDKGLRLTRRAESKIY 99 L LG R L L ++G + ++GR + FYSL++ +A SK + Sbjct: 23 ELSSKLGISSTATRQHLAILERDGLIKRTLVKEKMGRPKIFYSLTEGAETFFPKAYSKFF 82 Query: 100 RAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQG 134 KW ++ + +++ + +++ + G Sbjct: 83 ---------KW--IIRDMIEREGVEMLREMMARMG 106 >UniRef50_Q8TZ05 Predicted transcriptional regulator n=1 Tax=Methanopyrus kandleri RepID=Q8TZ05_METKA Length = 126 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%) Query: 34 RGGEIWLGSLAALLEGLGFG--ERFVRTALFRLNKEGWLDVSRIGRRSFYSL 83 +G I + + +L+ LG+ +R+AL+++ +EG L R+GR++ Y + Sbjct: 40 KGQWINVDEIVRVLKELGYNVKANSIRSALYKVRQEGLLKSKRLGRKTAYFI 91 >UniRef50_B7R0B2 Sugar-specific transcriptional regulator TrmB family n=1 Tax=Thermococcus sp. AM4 RepID=B7R0B2_9EURY Length = 164 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%) Query: 42 SLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRA 101 +++ L+E GF V TAL RL ++ ++V + GR +++ I Sbjct: 39 TISELVEETGFSRSAVSTALSRLQRDYLVEVQKKGRTKYFTAIPALFEKFLEQPKIILEK 98 Query: 102 EQPAWDGK 109 E + Sbjct: 99 EVMPLEET 106 >UniRef50_B4X5E4 Putative uncharacterized protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X5E4_9GAMM Length = 474 Score = 43.5 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 57/164 (34%), Gaps = 17/164 (10%) Query: 42 SLAALLEGLGFGERFVRTALFRLNKEGWLDVSRI----GRRSF-YSLSDKGLRLTRRAES 96 SL L LG ER R ++ L +G LD R+ GR S+ Y LS + Sbjct: 43 SLDRLAGKLGVSERLARHSIGVLVDQGLLDARRVEGRTGRPSYDYRLS-------KLVAD 95 Query: 97 KIYRAEQPAWDGKWLLL--LSEGLDKSTLADVKKQLIWQGFGALAP-SLMASPSQKLADV 153 ++ P G L+ L L +K+ FG P +L L + Sbjct: 96 RLNLQVGPVSVGHEGLVKSLLSIPSPGGLEVTRKKGRT--FGPPNPDALSVGSKLVLIVL 153 Query: 154 QTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNA 197 T GV N F + +S +R + + W L Sbjct: 154 LTEADSCGVVRNCSTFGLAKQVGMSVQRVRRHLRKLWRLGYMRD 197 >UniRef50_B9LN99 Transcriptional regulator, ArsR family n=1 Tax=Halorubrum lacusprofundi ATCC 49239 RepID=B9LN99_HALLT Length = 142 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%) Query: 49 GLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDG 108 LG + V AL RL G L + GR +Y + + RL + E + D Sbjct: 70 ALGVSQGAVSQALSRLYDAGLLTRRKEGRWRYYDATGRAERLLALLDETRSAGETGSADE 129 Query: 109 K 109 + Sbjct: 130 R 130 >UniRef50_B2NB02 PaaX family protein n=3 Tax=root RepID=B2NB02_ECOLX Length = 303 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 7/80 (8%) Query: 22 LISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWL--DVSRIGRR- 78 +I + D + G + + LG GE VRTA+ L +GWL R G R Sbjct: 24 MIMARLADYSNDDGVCYP--GVETICRQLGLGESTVRTAISELEADGWLTRQSRRKGNRN 81 Query: 79 --SFYSLSDKGLRLTRRAES 96 + Y L+ L R E Sbjct: 82 TSNLYHLNADRLEQLARTER 101 >UniRef50_Q72WJ5 ChrB protein n=3 Tax=Desulfovibrionales RepID=Q72WJ5_DESVH Length = 334 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 50/153 (32%), Gaps = 12/153 (7%) Query: 100 RAEQPAWDGKWLLLLSEGLDKST--LADVKKQLIWQGFGALAPSLMASPS-----QKLAD 152 RA Q WLL + + A V ++L G + S+ P L Sbjct: 5 RAAQDGMHHPWLLCIHNIPPRPPYLRAKVARRLAALGAMPVKNSVYVLPDTAPHRDALVW 64 Query: 153 VQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPL 212 + + + G V A A + + + A Y + F+PLV Sbjct: 65 LAQEIEQGGGKAYVC--RATFDGLDGGGLSDADIRRLF-TEAREADYRSLAGEFQPLVEG 121 Query: 213 L--KEAADELTPERAFHIQLLLIHFYRRVVLKD 243 L +AD+ ++A L Y V+ D Sbjct: 122 LTAPSSADDAAVQQARQWCTQLKARYEAVLALD 154 >UniRef50_B9YB12 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YB12_9FIRM Length = 126 Score = 42.7 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Query: 30 SLSHRGGEIWLGSLAALLEGLGFG--ERFVRTALFRLNKEGWLDVSRIGRRSFY--SLSD 85 + GG + + L +E G VRT + RL +G L + GR + Y +S+ Sbjct: 14 LIWDHGGAMTISELLDQIERTGRDWKRTTVRTFISRLIDKGMLISQKEGRGARYVARISE 73 Query: 86 K 86 + Sbjct: 74 E 74 >UniRef50_O07127 Uncharacterized 16.5 kDa protein in ptsI 3'region n=3 Tax=Lactobacillus sakei RepID=YPTY_LACSK Length = 146 Score = 42.7 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 36 GEIWLGSLAALLEG-LGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRA 94 G++ L LL+ + + ++T + RL K+G+L + GRR Y+ + + A Sbjct: 23 GQVNSRDLIDLLQPKRDWQDSTIKTLIGRLVKKGFLKTEKEGRRFNYTATVPEIEAMENA 82 Query: 95 ESKIYRA 101 ++ Sbjct: 83 TQSLFEH 89 >UniRef50_C1TMZ1 Transcriptional regulator, gntR family n=5 Tax=Bacteria RepID=C1TMZ1_9BACT Length = 114 Score = 41.5 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 18/44 (40%) Query: 39 WLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYS 82 G L L + G VR L RL + G L+ S GR Y Sbjct: 24 SSGYLRELADEFGESTNSVRVELNRLAEAGLLESSTEGRTKVYR 67 >UniRef50_B8IZ34 GntR domain protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZ34_DESDA Length = 261 Score = 40.8 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 27/62 (43%) Query: 45 ALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQP 104 L+E G G VR AL L + G ++VS R L+ L RA +IY + Sbjct: 54 ELMEEFGVGRPAVREALSALARMGLIEVSPGMRARVCRLTLNPLLREMRATMEIYSSTHD 113 Query: 105 AW 106 W Sbjct: 114 GW 115 >UniRef50_A9GPM4 Transcriptional repressor CopY n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GPM4_SORC5 Length = 124 Score = 40.8 bits (94), Expect = 0.071, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 8/99 (8%) Query: 36 GEIWLGSLAALLEGLG--FGERFVRTALFRLNKEGWLDVSRIGRRSFYSLS----DKGLR 89 GE +G + + + G V T L RL+++GW++ R GR+ Y S + Sbjct: 21 GEGSVGDVVSAMAEDGRELAPTTVATLLQRLSQQGWVERKRSGRQFVYRASVDQKEAARG 80 Query: 90 LTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKK 128 + R + A + LL SE L L ++++ Sbjct: 81 VLHRVLRSFFGGRASALTAQ--LLESEQLSPEELEEMQR 117 >UniRef50_B0RMW8 Transcriptional regulator, MarR family n=19 Tax=Xanthomonadaceae RepID=B0RMW8_XANCB Length = 189 Score = 40.8 bits (94), Expect = 0.075, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 9/87 (10%) Query: 56 FVRTALFRLNKEGWLDVSRIG---RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLL 112 V A+ RL + G++ G RRS +LS G ++ + EQ L+ Sbjct: 106 AVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAPLVNEMEQR------LM 159 Query: 113 LLSEGLDKSTLADVKKQLIWQGFGALA 139 + ++ TL + +L G +A Sbjct: 160 SVFSAEEQQTLERLIDRLAKDGLPRMA 186 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76086 Phenylacetic acid degradation operon negative re... 335 1e-90 UniRef50_B0VB47 Phenylacetic acid degradation operon negative re... 321 2e-86 UniRef50_A5W398 Transcriptional regulator, PaaX family n=15 Tax=... 312 1e-83 UniRef50_Q5P0I2 PadR protein, putative regulator of anaerobic ph... 307 4e-82 UniRef50_Q2W5Q7 Phenylacetic acid-responsive transcriptional rep... 299 1e-79 UniRef50_C4X7Q1 Transcriptional repressor for phenylacetic acid ... 298 2e-79 UniRef50_Q13AY1 Phenylacetic acid degradation operon negative re... 289 1e-76 UniRef50_B1YIK0 Transcriptional regulator, PaaX family n=12 Tax=... 288 1e-76 UniRef50_A0Z5G1 Phenylacetic acid degradation operon negative re... 285 1e-75 UniRef50_B1KMA4 Transcriptional regulator, PaaX family n=1 Tax=S... 284 3e-75 UniRef50_C4ZL33 Transcriptional regulator, PaaX family n=1 Tax=T... 281 3e-74 UniRef50_A4IPK1 Repressor in the phenylacetic acid catabolic pat... 277 3e-73 UniRef50_A9IJP6 Phenylacetic acid degradation operon negative re... 273 5e-72 UniRef50_B6R4J9 Phenylacetic acid degradation operon negative re... 266 5e-70 UniRef50_UPI00016938B8 repressor in the phenylacetic acid catabo... 264 2e-69 UniRef50_A1SSP9 PaaX domain protein, C-terminal domain n=1 Tax=P... 260 4e-68 UniRef50_Q47J36 Phenylacetic acid degradation operon negative re... 257 3e-67 UniRef50_C1A4Z4 Phenylacetic acid degradation operon negative re... 250 6e-65 UniRef50_Q0K1H1 Transcriptional regulator, PAAX-family n=3 Tax=C... 249 1e-64 UniRef50_C4KFT2 Transcriptional regulator, PaaX family n=8 Tax=S... 245 1e-63 UniRef50_C4KFG5 Transcriptional regulator, PaaX family n=8 Tax=S... 243 9e-63 UniRef50_Q67SZ7 Transcriptional regulatory protein, repressor-ty... 234 3e-60 UniRef50_A4V8M5 Putative transcriptional regulator n=2 Tax=Arthr... 230 5e-59 UniRef50_A7IDQ3 Transcriptional regulator, PaaX family n=5 Tax=R... 227 4e-58 UniRef50_B9QZJ2 PaaX-like protein n=1 Tax=Labrenzia alexandrii D... 224 3e-57 UniRef50_A0NQP8 Putative regulator of phenylacetic acid degradat... 221 2e-56 UniRef50_A4FEE0 Repressor in the phenylacetic acid catabolism n=... 221 3e-56 UniRef50_A6UH21 Transcriptional regulator, PaaX family n=3 Tax=R... 218 1e-55 UniRef50_Q0SFS4 Transcriptional repressor for phenylacetic acid ... 218 2e-55 UniRef50_Q8L3B8 PadR protein (Fragment) n=1 Tax=Azoarcus evansii... 216 9e-55 UniRef50_C8X827 Transcriptional regulator, PaaX family n=1 Tax=N... 216 9e-55 UniRef50_B8IKF5 Transcriptional regulator, PaaX family n=1 Tax=M... 216 1e-54 UniRef50_C1XSN8 Phenylacetic acid-responsive transcriptional rep... 214 3e-54 UniRef50_UPI0001B54B27 repressor in the phenylacetic acid catabo... 213 7e-54 UniRef50_C7MUF0 Phenylacetic acid-responsive transcriptional rep... 213 8e-54 UniRef50_UPI0000F2FC7D PaaX n=1 Tax=Acinetobacter baumannii ATCC... 212 1e-53 UniRef50_A1RBT3 Putative transcriptional regulator, PaaX-like pr... 211 2e-53 UniRef50_Q07SZ1 Phenylacetic acid degradation operon negative re... 209 7e-53 UniRef50_C1RIS8 Phenylacetic acid-responsive transcriptional rep... 209 1e-52 UniRef50_C7QFV2 Transcriptional regulator, PaaX family n=1 Tax=C... 208 2e-52 UniRef50_C4DKB7 Phenylacetic acid-responsive transcriptional rep... 208 3e-52 UniRef50_B8IM94 Transcriptional regulator, PaaX family n=1 Tax=M... 208 3e-52 UniRef50_D0DCP9 Transcriptional regulator, PaaX family n=1 Tax=C... 205 2e-51 UniRef50_Q2HWJ0 Putative transcriptional regulator n=1 Tax=Nocar... 204 5e-51 UniRef50_A8LCV5 Transcriptional regulator, PaaX family n=1 Tax=F... 202 1e-50 UniRef50_UPI0001C31D78 transcriptional regulator, PaaX family n=... 199 9e-50 UniRef50_D1BV77 Transcriptional regulator, PaaX family n=2 Tax=A... 199 1e-49 UniRef50_UPI0001B5864E repressor in the phenylacetic acid catabo... 195 2e-48 UniRef50_C7QAQ9 Transcriptional regulator, PaaX family n=11 Tax=... 194 3e-48 UniRef50_A1BBH9 PaaX domain protein n=1 Tax=Paracoccus denitrifi... 194 5e-48 UniRef50_UPI000050F8F1 PaaX family transcriptional regulator n=1... 193 5e-48 UniRef50_A3K7C6 Putative regulator of phenylacetic acid degradat... 192 9e-48 UniRef50_A4X2T5 Transcriptional regulator, PaaX family n=9 Tax=A... 192 2e-47 UniRef50_UPI0000510548 transcriptional regulator, PaaX family pr... 191 2e-47 UniRef50_D1WW52 Transcriptional regulator, PaaX family n=4 Tax=S... 191 2e-47 UniRef50_A5FUP1 Transcriptional regulator, PaaX family n=1 Tax=A... 191 2e-47 UniRef50_Q2HR06 Phenyl acetic acid responsive transcriptional re... 189 1e-46 UniRef50_A9DGK3 Phenylacetic acid degradation operon negative re... 186 8e-46 UniRef50_UPI0001B55AC7 probable phenylacetic acid degradation op... 185 2e-45 UniRef50_C1RMN4 Phenylacetic acid-responsive transcriptional rep... 179 8e-44 UniRef50_A3JQN4 Phenylacetic acid degradation operon negative re... 177 4e-43 UniRef50_D1VIM9 Transcriptional regulator, PaaX family n=1 Tax=F... 177 5e-43 UniRef50_C4RGY6 PaaX family transcriptional regulator n=2 Tax=Mi... 172 2e-41 UniRef50_B9NQI2 PaaX domain protein n=2 Tax=Rhodobacteraceae Rep... 169 1e-40 UniRef50_C6D2L6 Putative transcriptional regulator, PaaX family ... 169 2e-40 UniRef50_C4RH20 Putative uncharacterized protein n=1 Tax=Micromo... 162 2e-38 UniRef50_Q72HH2 PhaN n=3 Tax=Thermus RepID=Q72HH2_THET2 162 2e-38 UniRef50_Q1GJJ7 PaaX-like protein n=9 Tax=Rhodobacterales RepID=... 160 7e-38 UniRef50_B1N6G0 Putative phenylacetic acid degradation operon ne... 159 2e-37 UniRef50_Q0RIQ5 Putative repressor n=1 Tax=Frankia alni ACN14a R... 157 5e-37 UniRef50_A6GMQ6 Putative uncharacterized protein n=1 Tax=Limnoba... 156 8e-37 UniRef50_C1RIT6 Phenylacetic acid-responsive transcriptional rep... 154 5e-36 UniRef50_A9DZC9 PaaX domain protein n=4 Tax=Rhodobacteraceae Rep... 152 2e-35 UniRef50_B7GXE1 PaaX-like family protein n=15 Tax=Acinetobacter ... 150 4e-35 UniRef50_D0SVR1 Predicted protein n=1 Tax=Acinetobacter lwoffii ... 150 4e-35 UniRef50_A8LTJ1 Transcriptional regulator PaaX n=1 Tax=Dinoroseo... 148 3e-34 UniRef50_A6GRV6 Putative uncharacterized protein n=1 Tax=Limnoba... 146 1e-33 UniRef50_B8FMU0 Putative transcriptional regulator, PaaX family ... 145 2e-33 UniRef50_B6AVQ6 PaaX domain protein, C-terminal domain, putative... 142 1e-32 UniRef50_C0ZNL2 Putative uncharacterized protein n=2 Tax=Rhodoco... 142 2e-32 UniRef50_A3VFU0 PaaX domain protein n=1 Tax=Rhodobacterales bact... 141 2e-32 UniRef50_B4RT35 PaaX-like protein n=4 Tax=Alteromonadales RepID=... 136 9e-31 UniRef50_B1MJ58 Putative repressor in the phenylacetic acid cata... 134 5e-30 UniRef50_B7X5K7 Putative transcriptional regulator, PaaX family ... 133 1e-29 UniRef50_A3N453 Conserved domain protein n=24 Tax=Burkholderiale... 132 2e-29 UniRef50_A0PWR1 Putative uncharacterized protein n=2 Tax=Mycobac... 132 2e-29 UniRef50_Q28UN6 PaaX-like protein n=1 Tax=Jannaschia sp. CCS1 Re... 130 6e-29 UniRef50_A1UBK1 PaaX domain protein, C-terminal domain n=11 Tax=... 130 7e-29 UniRef50_A4T1R0 PaaX domain protein, C-terminal domain n=20 Tax=... 127 4e-28 UniRef50_B5JMA2 PaaX-like protein C-terminal domain n=1 Tax=Verr... 124 3e-27 UniRef50_D0L5H2 PaaX domain protein protein domain protein n=1 T... 124 4e-27 UniRef50_C2AK69 Phenylacetic acid-responsive transcriptional rep... 124 4e-27 UniRef50_A4A7F5 PaaX-like protein n=2 Tax=unclassified Gammaprot... 124 6e-27 UniRef50_UPI00005103A0 hypothetical protein BlinB_17434 n=1 Tax=... 123 7e-27 UniRef50_C0ZMY9 Putative uncharacterized protein n=2 Tax=Rhodoco... 118 3e-25 UniRef50_Q0C353 Putative uncharacterized protein n=1 Tax=Hyphomo... 115 2e-24 UniRef50_B6IPS7 Putative uncharacterized protein n=1 Tax=Rhodosp... 112 1e-23 UniRef50_Q07SC0 PaaX domain protein, C-terminal domain n=2 Tax=P... 105 2e-21 UniRef50_B5JH73 PaaX-like protein C-terminal domain n=1 Tax=Verr... 100 1e-19 UniRef50_A6WC05 Putative transcriptional regulator, PaaX family ... 100 1e-19 UniRef50_B5JQS9 PaaX-like protein C-terminal domain n=1 Tax=Verr... 91 4e-17 UniRef50_C7ACF7 Putative regulatory protein (Fragment) n=1 Tax=R... 77 5e-13 UniRef50_D1A2H2 Putative transcriptional regulator, PaaX family ... 72 3e-11 UniRef50_B1ZX33 Putative transcriptional regulator, PaaX family ... 69 2e-10 Sequences not found previously or not previously below threshold: UniRef50_Q8TZ05 Predicted transcriptional regulator n=1 Tax=Meth... 49 2e-04 UniRef50_D1N5H3 Transcriptional regulator, GntR family with LacI... 49 3e-04 UniRef50_Q72WJ5 ChrB protein n=3 Tax=Desulfovibrionales RepID=Q7... 46 0.002 UniRef50_B2NB02 PaaX family protein n=3 Tax=root RepID=B2NB02_ECOLX 46 0.002 UniRef50_C1TMZ1 Transcriptional regulator, gntR family n=5 Tax=B... 45 0.002 UniRef50_B8GFI1 Transcriptional regulator, MarR family n=1 Tax=M... 44 0.007 UniRef50_O07127 Uncharacterized 16.5 kDa protein in ptsI 3'regio... 44 0.009 UniRef50_Q977V6 Putative Rep protein n=1 Tax=Pyrococcus sp. JT1 ... 43 0.011 UniRef50_Q9S7P1 Os01g0255000 protein n=6 Tax=Spermatophyta RepID... 42 0.024 UniRef50_B8IZ34 GntR domain protein n=1 Tax=Desulfovibrio desulf... 41 0.043 UniRef50_B9LN99 Transcriptional regulator, ArsR family n=1 Tax=H... 41 0.048 UniRef50_B7R0B2 Sugar-specific transcriptional regulator TrmB fa... 41 0.054 UniRef50_Q9L219 Putative ArsR-family transcriptional regulator n... 41 0.059 UniRef50_A3CX94 Transcriptional regulator, TrmB n=1 Tax=Methanoc... 41 0.071 UniRef50_C5BRV6 Transcriptional regulator, GntR family n=1 Tax=T... 40 0.080 >UniRef50_P76086 Phenylacetic acid degradation operon negative regulatory protein paaX n=30 Tax=Enterobacteriaceae RepID=PAAX_ECOLI Length = 316 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 316/316 (100%), Positives = 316/316 (100%) Query: 1 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA 60 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA Sbjct: 1 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA 60 Query: 61 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK 120 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK Sbjct: 61 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK 120 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA Sbjct: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV Sbjct: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 Query: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR Sbjct: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 Query: 301 FGGLNIEQEALCQFIR 316 FGGLNIEQEALCQFIR Sbjct: 301 FGGLNIEQEALCQFIR 316 >UniRef50_B0VB47 Phenylacetic acid degradation operon negative regulatory protein n=11 Tax=Acinetobacter RepID=B0VB47_ACIBY Length = 321 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 121/312 (38%), Positives = 177/312 (56%), Gaps = 2/312 (0%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 +K+ I V +SGTSLIS+++GDS+ HRGG I L SL LLE GF +R VRT++ Sbjct: 5 AKIQQIIDSVVKNETLSGTSLISTIFGDSVLHRGGNISLASLIQLLELFGFNDRAVRTSV 64 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS 121 FRL K WL +IGR SFY ++D +AE +IY + WD W L+L LD Sbjct: 65 FRLVKNDWLCSDKIGRTSFYRITDSSRSTYLQAEQRIYNDQMKEWDHYWDLILMSSLDTE 124 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA- 180 A +KK+L W GF ++ +LMA P ++Q LL + +++ V+ F+A+ + + Sbjct: 125 NKALLKKELEWLGFANISTNLMAYPGCNRIELQRLLVDLNMSEQVVVFKAETLQLFNNSV 184 Query: 181 -ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRV 239 + + W + E Y F+ FR + LL + ++L P +AF I+ LLIH+YRR+ Sbjct: 185 DTIGRMLRTNWPIDELRQRYLQFLDIFREIGVLLMQENEQLEPVQAFQIRTLLIHYYRRI 244 Query: 240 VLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQ 299 +LKDP LP ELLP W +AR L +NIY++V A + T+ G +P + Y++ Sbjct: 245 LLKDPALPLELLPTDWPAISARTLSMNIYKKVFEPADEYFLSVAATAEGPMPNATAHYWR 304 Query: 300 RFGGLNIEQEAL 311 RFGGL E L Sbjct: 305 RFGGLVATNERL 316 >UniRef50_A5W398 Transcriptional regulator, PaaX family n=15 Tax=Proteobacteria RepID=A5W398_PSEP1 Length = 334 Score = 312 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 129/305 (42%), Positives = 180/305 (59%), Gaps = 1/305 (0%) Query: 1 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA 60 ++ L+ I P+ +SLI +LYGD++ GG +WLGSL LLE +G ER +RT+ Sbjct: 31 LAPLNHLITRFQEQTPIRASSLIITLYGDAIEPHGGTVWLGSLINLLEPIGINERLIRTS 90 Query: 61 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK 120 +FRL KEGWL ++GRRS+YSL+ G R +A ++Y QPAWDG W L+L L+ Sbjct: 91 IFRLTKEGWLTAEKVGRRSYYSLTGTGRRRFEKAFKRVYSPSQPAWDGAWTLVLLSQLEA 150 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 V+++L WQGFG +AP+L+ P AD+ L + D+ I F+ L+ Sbjct: 151 GKRKAVREELEWQGFGVMAPNLLGCPRADRADLVATLRDLEAGDDSIVFDTHTQEVLASK 210 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 A+RA+V E W + E Y FIQ FRPL LKE L + F + LLIH YRR++ Sbjct: 211 AMRAQVRESWRIDELGQQYSEFIQLFRPLWQGLKEQ-PLLDAQDCFLARTLLIHEYRRLL 269 Query: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 L+DP LP+ELLP W G ARQLC N+Y+ V A +++ ET+ G LP +++R Sbjct: 270 LRDPQLPDELLPGDWEGRAARQLCRNLYRLVFAKAEEWLNAALETADGPLPDVSESFYKR 329 Query: 301 FGGLN 305 FGGL Sbjct: 330 FGGLA 334 >UniRef50_Q5P0I2 PadR protein, putative regulator of anaerobic phenylacetate metabolism n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P0I2_AZOSE Length = 318 Score = 307 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 169/308 (54%), Gaps = 2/308 (0%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 + +I + V SLI ++YGD ++ GG +WLGS L+E LG ER VRT+++R Sbjct: 6 ITQWINDYLAERRVRANSLIITIYGDFIAPHGGTVWLGSFIRLVEPLGLNERMVRTSVYR 65 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLL-LSEGLDKST 122 L+++ WL +IGR+S+YSL+ G R A +IY A Q W+G+W L+ L L Sbjct: 66 LSQDKWLVSEQIGRKSYYSLTASGRRRFEHAYRRIYDARQLPWNGEWQLVILPSTLPAPQ 125 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 ++K+L W G+G +AP ++A PS + +L E G D V+ A ALS L Sbjct: 126 RDALRKELSWAGYGTIAPCVLAHPSADTETLLEILQETGTHDKVVPMTAHNLGALSNRPL 185 Query: 183 RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLK 242 + ECW+L A Y F RP++ L+ A +L PE+ F +Q L +H +RR +L Sbjct: 186 QDLARECWNLEAIGATYREFADRLRPVLRALR-TARDLDPEQCFLVQTLTMHDFRRALLH 244 Query: 243 DPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFG 302 DPLLP++L+P W+G AR++C +IY+ A + +T G LP +++RFG Sbjct: 245 DPLLPDQLMPVDWSGAVAREVCRDIYRITYRLAQQHLMATCKTPNGPLPPAAPYFYERFG 304 Query: 303 GLNIEQEA 310 GL Sbjct: 305 GLEDTTHR 312 >UniRef50_Q2W5Q7 Phenylacetic acid-responsive transcriptional repressor n=3 Tax=Proteobacteria RepID=Q2W5Q7_MAGSA Length = 308 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 123/306 (40%), Positives = 175/306 (57%), Gaps = 5/306 (1%) Query: 3 KLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALF 62 ++ + + + SLI ++YGD++SH GG WLGS+ L+E LG ER VRT++F Sbjct: 4 RVGEIVGQVLARLRPKAKSLIITVYGDAISHHGGSAWLGSVINLVEPLGLNERIVRTSVF 63 Query: 63 RLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLS--EGLDK 120 RL+KE WL +IGRRS+Y L++ G R A ++IY WDG+W L ++ EG+D Sbjct: 64 RLSKEAWLSSMQIGRRSYYRLTEMGRRRFEAAHNRIYHFNGKPWDGRWTLAVTNIEGMDA 123 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 +++ L W GFG LA ++ P + + V+ L EAGV D + A ++ Sbjct: 124 ERRDSLRRDLGWLGFGQLASGVLVHPDR--SAVRQALAEAGVQDRAVMMVASAEDWVTPE 181 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 ALR + CW L Y F+ +FRPL L A EL P+ F ++ LL+H YRR + Sbjct: 182 ALRDLIHTCWDLDRLAGDYNEFLDTFRPLWQAL-SGAGELDPQMCFVVRTLLMHGYRRAL 240 Query: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 L+DP+LP+ELLPAHW G +AR LC N+Y+ V AA V ET+ G +P Y+ R Sbjct: 241 LRDPMLPDELLPAHWPGTSARVLCRNLYRLVQTAAETHVMGMLETAEGPVPEAHPAYYTR 300 Query: 301 FGGLNI 306 FGGL Sbjct: 301 FGGLQS 306 >UniRef50_C4X7Q1 Transcriptional repressor for phenylacetic acid degradation n=4 Tax=Enterobacteriaceae RepID=C4X7Q1_KLEPN Length = 308 Score = 298 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 249/305 (81%), Positives = 266/305 (87%), Gaps = 1/305 (0%) Query: 1 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTA 60 MSKLD FIQ AV A+P+SGTSLI+SLYGD+L RGGE+WLGS+AALLEGLGFGERFVRTA Sbjct: 1 MSKLDAFIQQAVTAMPISGTSLIASLYGDALLQRGGEVWLGSVAALLEGLGFGERFVRTA 60 Query: 61 LFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK 120 LFRLNKE WLDV RIGRRSFY LSDKGLRLTRRAE KIYRA P WDG WLLLLSEGL+K Sbjct: 61 LFRLNKEEWLDVVRIGRRSFYRLSDKGLRLTRRAEHKIYRASAPEWDGTWLLLLSEGLEK 120 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 + LADVKKQL+WQGFGALAPSL+ASPSQKL DVQ+LLHEAGVA+NVICFEA PLALSRA Sbjct: 121 NVLADVKKQLLWQGFGALAPSLLASPSQKLTDVQSLLHEAGVAENVICFEAHSPLALSRA 180 Query: 181 ALRARVEECWHLTEQNAMYETFIQ-SFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRV 239 ALR+RVEECWHLTEQN MYE FI L L ELTP+R F IQLLLIHFYRRV Sbjct: 181 ALRSRVEECWHLTEQNEMYEAFIALFRPLLPLLRDCDPSELTPDRCFQIQLLLIHFYRRV 240 Query: 240 VLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQ 299 VLKDPLLPEELLPAHWAG TARQLCINIYQRV+P ALAFVSEKGE+SVGELP PG LY+Q Sbjct: 241 VLKDPLLPEELLPAHWAGQTARQLCINIYQRVSPGALAFVSEKGESSVGELPVPGPLYYQ 300 Query: 300 RFGGL 304 RFGGL Sbjct: 301 RFGGL 305 >UniRef50_Q13AY1 Phenylacetic acid degradation operon negative regulatory protein paaX n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q13AY1_RHOPS Length = 312 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 112/306 (36%), Positives = 172/306 (56%), Gaps = 3/306 (0%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 L +I + P+ SLI ++YGD ++ GG +WLG L+E LG R VRT++FR Sbjct: 6 LSQWIAKQLADRPLRANSLIITIYGDMIAPLGGTVWLGGFIRLVEPLGLNARAVRTSVFR 65 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTL 123 L++E WL +IGRRS+YSL+ G R A +IY +W G W ++L+ S Sbjct: 66 LSREKWLVSEQIGRRSYYSLTATGRRRFELAFRRIYEDASISWAGDWQVVLT--PGDSLT 123 Query: 124 ADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALR 183 ++K+L+W G+ A+AP +A PS + + +L AG D V+ +A+ ALS ++ Sbjct: 124 PALRKELLWAGYAAIAPGALAHPSAQTDALLDILQNAGAHDKVVVLQARTLGALSSRPIK 183 Query: 184 ARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKD 243 V++CW+L + Y++FI FR + L+ ++ L PE+ F I+ LL+H +RRV L+D Sbjct: 184 ELVDQCWNLGKVAGEYQSFIDRFRSVARALRSTSN-LDPEQCFIIRTLLMHEFRRVQLRD 242 Query: 244 PLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGG 303 P LP +LLP W G AR +C +IY+ + + ETS G LP + RFGG Sbjct: 243 PSLPRQLLPDDWPGDKARVMCRDIYRLCWVKTEEHLMQMLETSDGPLPPAEKSFHARFGG 302 Query: 304 LNIEQE 309 + E+ Sbjct: 303 VIDEEA 308 >UniRef50_B1YIK0 Transcriptional regulator, PaaX family n=12 Tax=Bacillales RepID=B1YIK0_EXIS2 Length = 294 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 85/271 (31%), Positives = 137/271 (50%), Gaps = 7/271 (2%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 + S+I ++YGD + H G +IW+GSL LL+ G E+ VR A+ R+ K+GWL + G Sbjct: 4 NTQSMIFTVYGDYIRHYGNQIWVGSLIRLLKEFGHNEQAVRVAVSRMVKQGWLTSQKQGT 63 Query: 78 RSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGF 135 +SFYSL+ +G+ A +IY++ WDGKW L+ + + +++K+L W GF Sbjct: 64 KSFYSLTPRGVERMEEAARRIYKSTPHVWDGKWRTLMYTIPEDKRQIRDELRKELSWSGF 123 Query: 136 GALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQ 195 G L+ + SP+ + + L+ + + F + ++ VE + L E Sbjct: 124 GNLSNGVWISPNPLEKEAERLIEAYDIKAYIDFFVGEY---HGPQQDQSLVERAFPLDEL 180 Query: 196 NAMYETFIQSF--RPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPA 253 YE FI + R +V + E+ E+ F + L+H YR+ + DP LP+ELLP Sbjct: 181 QERYEQFIAEYSRRYIVHQSRIQLGEMDEEQCFVERTTLVHEYRKFLFTDPGLPQELLPD 240 Query: 254 HWAGHTARQLCINIYQRVAPAALAFVSEKGE 284 W+GH A L Y+ +A A F Sbjct: 241 EWSGHHAALLFEQYYRLLAEPASRFFESIFR 271 >UniRef50_A0Z5G1 Phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5G1_9GAMM Length = 291 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 109/289 (37%), Positives = 157/289 (54%), Gaps = 1/289 (0%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + SLI +L+GD +S GGEIWLGS+A +E LG +R VRT++FRL KEGWL+V R G Sbjct: 1 MRAKSLIITLFGDVISQHGGEIWLGSIAKSVEALGVNDRLVRTSVFRLAKEGWLEVEREG 60 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFG 136 R+SFY + G + +RA +IY A +W G W LL+ L ++ + ++ L W GF Sbjct: 61 RKSFYGFTRSGSKEYQRAAQRIYSAGGDSWHGTWQLLVPTNLPEAQRDNFRRSLHWLGFR 120 Query: 137 ALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQN 196 A++ A P ++ LL E + V+ EA+ + R V E W L Sbjct: 121 AISNGTFARPGGDEDSIRDLLDEFDLNSGVVVMEAKTSSLTTPKEWRELVSEHWQLRNLE 180 Query: 197 AMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWA 256 Y I F PL L + TP AF +LLLIH YRR++L+D LP +LLP W Sbjct: 181 DEYRQIIGLFSPLKKALDKG-KVPTPLEAFQARLLLIHEYRRILLRDTPLPTDLLPNRWQ 239 Query: 257 GHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLN 305 G ARQL +Y+ +A + +++ + G LP ++QRFGG++ Sbjct: 240 GTVARQLAQALYRDLAKPSTSYIQTELVNRQGRLPESEYYFYQRFGGIS 288 >UniRef50_B1KMA4 Transcriptional regulator, PaaX family n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KMA4_SHEWM Length = 311 Score = 284 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 98/296 (33%), Positives = 157/296 (53%), Gaps = 2/296 (0%) Query: 6 TFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLN 65 FI V SG S++ +L+GD +S G IWLGSL L+ G+ ER +RT++FRL Sbjct: 9 KFINQRVEKS-SSGPSMLVTLFGDLVSQHGNWIWLGSLITGLKPFGYSERLIRTSVFRLV 67 Query: 66 KEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLAD 125 K WL ++GRR++Y+LS+ +A +IY +E + W +++ + + Sbjct: 68 KSDWLITKKVGRRTYYALSETAKAHHDKAARRIYSSEPSSLADAWTVVIPIFVPDNVKET 127 Query: 126 VKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRAR 185 KKQL W GF L A ++ L E G+ D VI ++ + S+ + Sbjct: 128 FKKQLQWLGFSPLTNGAYAHLEVDKQSLEDTLLELGLKDAVIVLSCKVDGSHSKNVFKRL 187 Query: 186 VEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPL 245 V+E W L A Y+ F+ ++RPL+ + + E F +++LLIH YRR++LKD Sbjct: 188 VKEYWGLETLEASYKEFLDAYRPLIIKFNKG-KMPSDETCFLLRILLIHEYRRILLKDKQ 246 Query: 246 LPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 LPE++LP W G A +L +Y ++A A++ + E E + G LP + ++QRF Sbjct: 247 LPEDMLPNGWVGFEAHELVGKLYAQLAQASVNYAVENLENAQGHLPYVSAKFWQRF 302 >UniRef50_C4ZL33 Transcriptional regulator, PaaX family n=1 Tax=Thauera sp. MZ1T RepID=C4ZL33_THASP Length = 319 Score = 281 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 172/308 (55%), Gaps = 3/308 (0%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 ++ +++ + +S SLI S+YGD ++ GG +WL L L+ G ER VRT+++R Sbjct: 6 IERWVEAHLAGRRISANSLIISVYGDLIAVHGGVVWLADLIRLMAPFGLNERVVRTSVYR 65 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLL-LSEGLDKST 122 L ++ WL+ ++GRRS+Y L+ G+R A +I+ E W G W ++ L L+ Sbjct: 66 LVQDDWLESGQVGRRSYYRLAASGMRRFAPAWRRIFEPEGEGWSGTWQVVMLPSALEARV 125 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 +++++L W G+GAL ++ P+ + ++ +L G+ D V+ A+ ++ AA Sbjct: 126 ADNLRRELSWAGYGALNAGVLLRPTDDASTLRNILDGCGLRDRVVPLTARGLDGVTGAAT 185 Query: 183 RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLK 242 V ECW L A Y+ FI+ FRPL+ A E PE+AF +Q LL+H +RRV+L Sbjct: 186 DELVRECWDLQAIAATYDGFIEHFRPLLRAF--GAGEAEPEQAFLVQTLLMHEFRRVLLH 243 Query: 243 DPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFG 302 DP LP +++P W G AR+LC +Y+ AA + T G LP P + +F+RFG Sbjct: 244 DPQLPVQVMPNRWRGDAARELCARLYRLSWRAACRHLQASCATPEGPLPPPSAQFFRRFG 303 Query: 303 GLNIEQEA 310 GL + A Sbjct: 304 GLELPPAA 311 >UniRef50_A4IPK1 Repressor in the phenylacetic acid catabolic pathway-like protein n=5 Tax=Geobacillus RepID=A4IPK1_GEOTN Length = 291 Score = 277 bits (709), Expect = 3e-73, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 138/287 (48%), Gaps = 11/287 (3%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + +L+ +L+G+ + H G E+W+GSL ++ G E +R A R+ ++ + +V +IG Sbjct: 1 MKPRALMFTLFGEYIQHYGNEVWIGSLIQMMSHFGISESSIRGAALRMVQQEFFEVRKIG 60 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQG 134 S+YSL+ KG R +++Y WDG+W +L + + + ++K+L G Sbjct: 61 NNSYYSLTPKGKRTMMDGFTRVYSLRNYKWDGRWRVLTYSVPEEKRELRSQIRKELSLMG 120 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 FG ++ ASP+ V + + + VI F A ++ S + +E W Sbjct: 121 FGLISHGTWASPNPIEPQVMEWIKDYHLEPYVILFTADSIVSHSNEQI---IERGWDFAY 177 Query: 195 QNAMYETFIQSFRPLVPLLKEAAD--ELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 Y+ FI+++ ++ A ELT F + L+H YR DP P +LLP Sbjct: 178 IAKEYDKFIETYERKYEEFQKQAWNNELTDRECFIERTKLVHEYRSFFFIDPGFPHDLLP 237 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQ 299 W+G AR+L N++Q +A A+ + E + P S++ + Sbjct: 238 DDWSGTRARELFFNVHQLLAIPAIRYFETLFEPA----PDRESVFNR 280 >UniRef50_A9IJP6 Phenylacetic acid degradation operon negative regulatory protein n=5 Tax=Bordetella RepID=A9IJP6_BORPD Length = 311 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 149/305 (48%), Gaps = 6/305 (1%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 S + I + P SL SL GD+L+ GG IWLG + LLE LG ER +RT++ Sbjct: 6 SPIGRHIARLLKEDPPRAKSLCVSLLGDALACHGGAIWLGGIIELLEPLGINERLLRTSV 65 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK- 120 FRL +GWL R GRRS Y LS++GLR T A +IY W+G+W L+ L Sbjct: 66 FRLVAQGWLQAERHGRRSLYQLSEQGLRHTAHASQRIYVGPAADWNGEWTLVALPRLGNN 125 Query: 121 --STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALS 178 + +++++L W+GFG +AP L A P +L + G+ D + + Sbjct: 126 GLAERTELRRELAWEGFGMIAPGLFAHPQADARAAHDILEKLGIPDKALVLSGRDLAGAG 185 Query: 179 RAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRR 238 + + +CW L Y F + F PL LL E L P AF ++LL+H +RR Sbjct: 186 GLPIASLAPQCWSLDALAGQYRHFSRQFGPLEKLLDE---PLDPADAFATRMLLLHTWRR 242 Query: 239 VVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYF 298 +VL DP LP +LP W GH AR LC IY ++ A+ + + Sbjct: 243 IVLHDPQLPVPMLPERWPGHAARALCGQIYWKLFDASEQHLDAVAGRDNERYTPLSPAVY 302 Query: 299 QRFGG 303 RFGG Sbjct: 303 TRFGG 307 >UniRef50_B6R4J9 Phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R4J9_9RHOB Length = 298 Score = 266 bits (681), Expect = 5e-70, Method: Composition-based stats. Identities = 92/303 (30%), Positives = 155/303 (51%), Gaps = 16/303 (5%) Query: 5 DTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRL 64 I P+ S+I S++GD ++ RGGE+W+G++ +++ +G VRTA+ RL Sbjct: 9 QKLIDRFHAQKPIRSWSMIISIFGDCVAQRGGELWMGNITEIMQMIGINSGVVRTAMSRL 68 Query: 65 NKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLA 124 +GWL+ +RIGR SFY L+ G +A +IY +G W+ + D A Sbjct: 69 ASDGWLERTRIGRNSFYRLTKMGREAFGQATPRIYARGPAKGNGSWITAILSEGD--DRA 126 Query: 125 DVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRA 184 D ++QLI QG+G +AP+++ P ++ + ++ +++ P + Sbjct: 127 DRREQLIEQGYGVIAPNVLIKPDNGQGAPKS-------SSKIVYMQSKAPADKALQ---- 175 Query: 185 RVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADE---LTPERAFHIQLLLIHFYRRVVL 241 + W+L Y FI+++ L L EA+ ++PE A I+++LIH RR+VL Sbjct: 176 LARQAWNLDSLQQGYSEFIENYHGLHACLSEASGSEPVISPEDALVIRIMLIHDLRRLVL 235 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 +DP LP + LP +WAG AR+L IY + ++ + + G LP P +F+RF Sbjct: 236 RDPELPLQALPDNWAGSIARELAAGIYSALRDRGEIWLDSYAKNAEGTLPPPEPAFFERF 295 Query: 302 GGL 304 L Sbjct: 296 QPL 298 >UniRef50_UPI00016938B8 repressor in the phenylacetic acid catabolic pathway n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016938B8 Length = 281 Score = 264 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 89/266 (33%), Positives = 136/266 (51%), Gaps = 8/266 (3%) Query: 30 SLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLR 89 + H G EIW+GSL L+ G E+ VR A+ R+ ++GWL+ ++G RS+YS+S +G + Sbjct: 17 YVRHYGSEIWVGSLTCLMGEFGLTEQAVRAAISRMLRQGWLESLKVGNRSYYSMSPRGKK 76 Query: 90 LTRRAESKIYRAEQPAWDGKWLLLLSEGLDKST--LADVKKQLIWQGFGALAPSLMASPS 147 A ++IY+ E W+GKW + +K ++K+L W GFG L S SP+ Sbjct: 77 RLDEAAARIYKQETDKWNGKWCIASYNIPEKQRGMRDQLRKELAWLGFGMLTTSTWISPN 136 Query: 148 QKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFR 207 V+ ++ G+ D+V F A ++ + R V++CW++ + NA Y FI +R Sbjct: 137 DLADRVKEIVESHGITDHVEIFRAD---HVAWSEPRQLVQKCWNIEDINAAYAEFIDEYR 193 Query: 208 PLVPLL---KEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLC 264 P L E + F + L+H YR+ + DP PEELLP W G A QL Sbjct: 194 PGYDSLLSKMEKGQSVPDGYCFVEKTKLVHQYRKFLFIDPDFPEELLPEVWLGKEADQLF 253 Query: 265 INIYQRVAPAALAFVSEKGETSVGEL 290 N Y + P A F + E+S L Sbjct: 254 QNYYDLLHPGASRFFEQVYESSPDGL 279 >UniRef50_A1SSP9 PaaX domain protein, C-terminal domain n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SSP9_PSYIN Length = 285 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 150/282 (53%), Gaps = 1/282 (0%) Query: 24 SSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSL 83 + GD L H I + SL E LGF +RFVR++LFRL ++GW+D ++GR+S+Y + Sbjct: 1 MTFLGDYLCHSDSAIGMSSLINFFESLGFNQRFVRSSLFRLKQDGWVDAKKVGRKSYYYM 60 Query: 84 SDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLM 143 + + R A KIY E+PAW+G+W + + K+L GFG L + Sbjct: 61 TPERFDEIREANKKIYNTEKPAWNGRWNFIHIPSSTITESNLKGKELAKYGFGILNKGMY 120 Query: 144 ASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFI 203 Q A + + ++ V + W+L + N Y F+ Sbjct: 121 IQADQGQALQPSFKRILSKCSDATILTGAELVSCKEKNKSKFVSDTWNLDKINDDYGAFV 180 Query: 204 QSFRPLVPLLKEAA-DELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQ 262 F P+ +++EA D L E F ++LLLIHFYRR++++DPLLP+E LP +W+G A++ Sbjct: 181 NMFDPIELMIQEAGSDALDNEDCFKLRLLLIHFYRRIIIRDPLLPDEFLPHNWSGRRAQE 240 Query: 263 LCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGL 304 + INIYQ++ A A ++E GET G LP S Y+ RF GL Sbjct: 241 ITINIYQKIHLQAKAHITEHGETIDGLLPLLASDYYSRFNGL 282 >UniRef50_Q47J36 Phenylacetic acid degradation operon negative regulatory protein paaX n=4 Tax=Bacteria RepID=Q47J36_DECAR Length = 352 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 160/306 (52%), Gaps = 7/306 (2%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 + + + + V SLI +++GD++ RGG IWLGSL LLE L ER +RT++ Sbjct: 40 TAIQSRLNEFRQQRRVQAGSLIITVFGDAILPRGGRIWLGSLIRLLEPLELNERLIRTSV 99 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLL-LLSEGLDK 120 FRL KE WL IGRR+ Y L+ G R A IY ++ P WD +W L L+ LD Sbjct: 100 FRLVKEEWLRTETIGRRADYVLTPSGRRRFEEASRHIYASDAPLWDRRWRLILVVGDLDP 159 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNV----ICFEAQIPLA 176 V++ L WQGFGAL PS +L+ V L G++ + F A A Sbjct: 160 KLREQVRRALFWQGFGALGADCFVHPSAELSSVLDTLITEGLSSAIGALMPLFAADSRSA 219 Query: 177 LSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEA-ADELTPERAFHIQLLLIHF 235 S + V W L Y F+ +++P++ L+ ++ + AF +++LLIH Sbjct: 220 QSASD-ADLVHRAWDLGHLAEAYSAFVATYQPILDELRRDHLAGVSEQDAFLLRILLIHD 278 Query: 236 YRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGS 295 YRR++L+DP LPE LLPA+W G +R LC +Y+R+ P A + ++ + G +P Sbjct: 279 YRRLLLRDPELPEVLLPANWPGQQSRLLCKELYKRLEPLASRHLDQQLCLADGRVPEEDL 338 Query: 296 LYFQRF 301 +RF Sbjct: 339 SLPERF 344 >UniRef50_C1A4Z4 Phenylacetic acid degradation operon negative regulatory protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A4Z4_GEMAT Length = 308 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 7/302 (2%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 S + + + + P TSL+ +++GD+++ GG WL +L L++ G ER VRT++ Sbjct: 8 SMITRWARQFLRDEPPRATSLVVTVFGDAIAPHGGSAWLRTLIDLMDTFGINERAVRTSV 67 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK- 120 +RL ++ WL+ R GR+S Y+L++ G+R A +IY P WDG+W+L+L + Sbjct: 68 YRLAEDAWLEAQRQGRQSRYALTESGVRRFMLASRRIYHPGLPTWDGQWILVLIPRGAEV 127 Query: 121 -STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSR 179 ++ D++++L W+GF + P L+A P ++ LL E GV D+ AQ ++ Sbjct: 128 MASRTDLRRELAWEGFATVTPGLLAHPQGDTTRLRELLDELGVRDDAFVVRAQDLPGVAA 187 Query: 180 AALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRV 239 L W L Y F+ F P+ + AD +P +AF I+ LL+H YRRV Sbjct: 188 RELSQLAS-YWPLESVATQYRDFLARFEPI-AEVAGKADACSPRQAFLIRTLLVHAYRRV 245 Query: 240 VLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQ 299 VL DP LP +LPA W G TA L +Y V P A A++ + G + + + Sbjct: 246 VLHDPRLPAAMLPADWPGRTAYALSRRLYLAVTPGAEAYLIDALGEDGGLV---NAEFRD 302 Query: 300 RF 301 RF Sbjct: 303 RF 304 >UniRef50_Q0K1H1 Transcriptional regulator, PAAX-family n=3 Tax=Cupriavidus RepID=Q0K1H1_RALEH Length = 312 Score = 249 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 109/302 (36%), Positives = 163/302 (53%), Gaps = 5/302 (1%) Query: 3 KLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALF 62 + + + + S++ +L+GD ++ R IWLGSL L G +R VRTA F Sbjct: 8 PVSPRVARLARGLKLGANSMLVTLFGDVVAPRPQAIWLGSLIRLAAPFGINDRLVRTATF 67 Query: 63 RLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS- 121 RL + WL +R+GRRS+Y LSD GL+ A +IY E WDG+W L++ G ++ Sbjct: 68 RLTADDWLAATRMGRRSYYGLSDAGLQRVLHAGKRIYAGEASEWDGRWTLVMVRGDVRAT 127 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA 181 +K++L+W+GFGA+AP +MA P LA ++ +L A D+V EA A S Sbjct: 128 VRQKLKRELLWEGFGAIAPGVMAHPQADLASLREILQAARAQDDVAVMEASSLEAFSIRP 187 Query: 182 LRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVL 241 L+A + + + L + A ++ ++ F PL E A L P AF ++ LL+H YRRV+L Sbjct: 188 LQALMHQTFKLGDVAAAWQALLRRFAPLA----EEAAGLAPADAFFVRTLLVHEYRRVLL 243 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 +DP LPE +LP W G TAR LC +Y + A+ ++ E + G L RF Sbjct: 244 RDPNLPEAMLPQDWPGRTARGLCHTLYGALLDASEDYLHRVVEAADGSLHDANRSLRLRF 303 Query: 302 GG 303 G Sbjct: 304 GA 305 >UniRef50_C4KFT2 Transcriptional regulator, PaaX family n=8 Tax=Sulfolobus RepID=C4KFT2_SULIK Length = 261 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 80/272 (29%), Positives = 126/272 (46%), Gaps = 16/272 (5%) Query: 17 VSGTSLISSLYGDS-LSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRI 75 + +LI ++ GD LS + G I SL L+ GF VRT L RL +EG + Sbjct: 1 MKLKTLIFTILGDYNLSKKNGAIRARSLVKLVGPFGFTNSAVRTTLHRLKREGLITSVNR 60 Query: 76 GRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQ 133 G Y+ S + L A ++ WDGKW +++ + K+ ++++L W Sbjct: 61 G---SYTFSQETLLKFETAIRRVKEWRFGHWDGKWRVVVYNFGEDNKALRNKIRRELKWL 117 Query: 134 GFGALAPSLMASPSQKLADVQTLLHEAGVADN-VICFEAQIPLALSRAALRARVEECWHL 192 GFG LA S SP+ V ++ + V F A + + CW+L Sbjct: 118 GFGTLASSTWVSPNPLEDVVNEMIEKYWKDGGKVYLFIAYF-----PQDPQIIIRTCWNL 172 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 +E Y+ FI + L+ + + L+P AF ++ ++H YR+ + DP LPEELLP Sbjct: 173 SEIELKYKEFISKWIGLLNKIDK----LSPAEAFVNKITILHEYRKFLHVDPGLPEELLP 228 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEKGE 284 +W G+ A +L NIY + P A + E Sbjct: 229 NNWIGYEAYKLFKNIYDSLTPLANKYFESVYE 260 >UniRef50_C4KFG5 Transcriptional regulator, PaaX family n=8 Tax=Sulfolobus RepID=C4KFG5_SULIK Length = 266 Score = 243 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 76/275 (27%), Positives = 127/275 (46%), Gaps = 15/275 (5%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR-I 75 + SL +LYGD + GG I SL + + GF E +R L R+ K G + + Sbjct: 1 MKIQSLFFTLYGDYVKDSGGTISSKSLIVIFKEFGFSEGAIRAGLHRMKKAGLIVGIKGE 60 Query: 76 GRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQL--IWQ 133 R+ Y LS+KG+ ++Y + WD KW +++ + + + + W Sbjct: 61 NRKVSYKLSEKGMLRLLEGTRRVYEKVRRRWDNKWRIVVYNIPENNRELRDRLRRELKWL 120 Query: 134 GFGALAPSLMASPSQKLADVQTLLHEAGVAD---NVICFEAQIPLALSRAALRARVEECW 190 GFG LA S SP+ ++ +++ + V F A + VE+CW Sbjct: 121 GFGMLAQSTWISPNPIEDTLKNFINDHYGSSNGIQVDIFVANYL-----GEPKGLVEKCW 175 Query: 191 HLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 +L+E Y F++ + ++ E L AF ++LL+H YR+ + DP LPE+L Sbjct: 176 NLSEVEQAYRAFLEKWTGVL----EKVSSLKSNEAFVTRILLVHEYRKFLNIDPDLPEDL 231 Query: 251 LPAHWAGHTARQLCINIYQRVAPAALAFVSEKGET 285 LP +W G+TA L + + + + P A F + E Sbjct: 232 LPPNWIGYTAYDLFMKLREELTPKANEFFYKVYEP 266 >UniRef50_Q67SZ7 Transcriptional regulatory protein, repressor-type n=1 Tax=Symbiobacterium thermophilum RepID=Q67SZ7_SYMTH Length = 285 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 136/273 (49%), Gaps = 8/273 (2%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + SL+ +L+GD + H GGE W +LAA + G E +R AL R+ ++GWL+V ++G Sbjct: 1 MKARSLLFNLWGDYIQHVGGEAWASTLAAWVRPFGVSEAALRQALSRMARQGWLEVRKVG 60 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK--STLADVKKQLIWQG 134 R+ Y+LS G R A ++Y WDG+W +L+ + + D++++LIW G Sbjct: 61 NRTCYALSAAGRRRIAEASRRVYDGRDVDWDGRWRVLVYSVPEALRNRRNDLRRELIWTG 120 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 F L+P SP+ V+ LL G+ F A S V CW L Sbjct: 121 FAHLSPGTWISPNPLEDSVRELLRRYGLEPYATLFVAPYAEPWS---APDLVRRCWDLEA 177 Query: 195 QNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 A Y+ FI + P L+ ++ + E F Q+ L+H YR+ + DP LP LLP Sbjct: 178 IQASYDRFIARWEP---RLEASSRLHSDEERFVEQIRLVHDYRKFLFVDPGLPRRLLPDT 234 Query: 255 WAGHTARQLCINIYQRVAPAALAFVSEKGETSV 287 W GH AR+L Y R+ P AL F+ E + Sbjct: 235 WRGHDARRLFQAYYARLRPGALRFLERHFEPTQ 267 >UniRef50_A4V8M5 Putative transcriptional regulator n=2 Tax=Arthrobacter nitroguajacolicus RepID=A4V8M5_9MICC Length = 288 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 69/279 (24%), Positives = 116/279 (41%), Gaps = 9/279 (3%) Query: 14 AVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVS 73 A LI ++YG G + L LL LG VR+++ RL K G L Sbjct: 9 APMPRHQHLIVTVYGLYSRTHDGGFAVSDLIRLLGDLGVESAGVRSSVSRLKKRGVLSSF 68 Query: 74 RIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLI 131 R G + Y L+ + R + +I+ + W+L+ + + ++ L Sbjct: 69 RQGGVAAYKLAQGLEDVFRAGDERIFARRRAKKGDDWILVSFSVPEAHRHLRHKLRTILT 128 Query: 132 WQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWH 191 G G ++P L +P +V L AG+ + V F+A L+ +RA+V + W Sbjct: 129 RIGCGQVSPGLWIAPGNLSDEVSQQLDRAGLMEYVDLFKA---APLTDDQIRAKVGQWWD 185 Query: 192 LTEQNAMYETFIQSFRPLVPLLK----EAADELTPERAFHIQLLLIHFYRRVVLKDPLLP 247 L A+Y FI+ + ++ + + AF + ++ +RR+ DP LP Sbjct: 186 LASLEALYNEFIERYEAVLERWLTVDVTTDQSIQEKLAFSDYVPMVTQWRRLPYLDPGLP 245 Query: 248 EELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETS 286 E LP W+G A L ++ +AP A + S S Sbjct: 246 SEYLPEGWSGLAAETLFAELHAALAPMAEKYASSVVGGS 284 >UniRef50_A7IDQ3 Transcriptional regulator, PaaX family n=5 Tax=Rhizobiales RepID=A7IDQ3_XANP2 Length = 305 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 96/295 (32%), Positives = 142/295 (48%), Gaps = 16/295 (5%) Query: 7 FIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNK 66 I V A P S+I ++YGD++ RGG +WLG+L A +GL + VRTA+ RL Sbjct: 25 LILDHVRAEPSRTWSIIVTIYGDAIVPRGGSVWLGTLLAFFKGLDIADGVVRTAMSRLAA 84 Query: 67 EGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADV 126 +GWL +RIGR SFY L+DKG RA IY P W G + +LL + + Sbjct: 85 DGWLTRTRIGRNSFYGLADKGRETFARATEHIYSHRPPEWRGHFQMLLI---EPAAREGA 141 Query: 127 KKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARV 186 + L G+G P + +P+ ++ ++ + A + Sbjct: 142 RAALDAAGYGVPLPGVFIAPAGAEV------------PEEALAALRLEVSGTPEAQQELA 189 Query: 187 EECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLL 246 W L E Y +F++ F PL L A + LT A ++LLIH YRR+VL+DP+L Sbjct: 190 GRAWRLEETAQAYVSFMEVFAPLRAAL-AAGETLTDLEAMVARVLLIHEYRRIVLRDPIL 248 Query: 247 PEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 P +LPA W G AR LC +IY V A+ ++ + G+ + +RF Sbjct: 249 PAAILPADWPGPAARALCADIYAHVIAASERWLDDNAVGEDGDPLPASAKIGRRF 303 >UniRef50_B9QZJ2 PaaX-like protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QZJ2_9RHOB Length = 314 Score = 224 bits (571), Expect = 3e-57, Method: Composition-based stats. Identities = 80/305 (26%), Positives = 123/305 (40%), Gaps = 26/305 (8%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 S + + + P LI ++YGD + RGG +W+G L L G E VRTA+ Sbjct: 34 SPAPILLPKLLPSYPPKAGPLIVTIYGDIVEPRGGTLWMGDLITLCGQFGVNESLVRTAV 93 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS 121 RL G L+ +R GRRS+Y L+D + A +I+ D LL D++ Sbjct: 94 SRLVARGQLEGARNGRRSYYRLTDAAGIEFQSASEQIFG----PPDSDCDLLFIVQPDRT 149 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA 181 L QGFGA++ +L + CF+A P S Sbjct: 150 DHQG----LADQGFGAVSETLFVGADRPSRITSG-----------ACFKA-CPDQRSEKE 193 Query: 182 LRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVL 241 + + + + L + A Y +F + L L+ I+L ++H +R + L Sbjct: 194 VAEMLNKVFGLDQLAARYRSFYKRIEALDCF------GLSGLETVTIRLAMVHEFRAIRL 247 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 KDP LP +LP W G +AR+L Y ++ A F+ G L +R Sbjct: 248 KDPRLPPSVLPVDWDGLSARRLFAEKYLELSETADPFIGSSLTGQGGALEDKTGPILKRL 307 Query: 302 GGLNI 306 L Sbjct: 308 SSLRS 312 >UniRef50_A0NQP8 Putative regulator of phenylacetic acid degradation, ArsR family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NQP8_9RHOB Length = 285 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 128/306 (41%), Gaps = 26/306 (8%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 + ++ + + P LI ++YGD + RGG +W+G L +L G E VRTA+ Sbjct: 3 TDTESLTEGFLQPFPPKAAQLIVTIYGDIVEPRGGVLWMGDLISLCASFGVNESLVRTAV 62 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLL-SEGLDK 120 RL +G L R GRRSFY+L+ A Y E D WLL +E D+ Sbjct: 63 SRLVSKGQLTGEREGRRSFYALTPDAREEYHLAADLFYGPEDT--DCGWLLTHCTEAADQ 120 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 + L+ GF +L ++ + + F A +R Sbjct: 121 AI-------LMRFGFASLEGNVFIGADRPGRPLLG-----------TTFRATD--VPNRG 160 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 L+ + L Y F+ F P+ L+ L P A +L L+H YR + Sbjct: 161 DLKDIASSAFGLGSLACDYAEFVSRFGPMQDLVARG---LLPRSALLFRLALVHAYRGIR 217 Query: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 L+DP LP +LP W+G+ AR L +Y+ ++P A ++++ G L +R Sbjct: 218 LRDPRLPRSVLPKDWSGYEARSLFAALYRNLSPGADGYIAQNLMNQDGLLAEEPDAVLKR 277 Query: 301 FGGLNI 306 L+ Sbjct: 278 MQALSS 283 >UniRef50_A4FEE0 Repressor in the phenylacetic acid catabolism n=4 Tax=Actinomycetales RepID=A4FEE0_SACEN Length = 288 Score = 221 bits (562), Expect = 3e-56, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 6/273 (2%) Query: 12 VNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLD 71 + LI ++YG GG + + +L LL LG E VR+++ RL + G L Sbjct: 16 LTGRGAQPRQLIVTVYGLYARESGGWLSVAALVRLLGDLGVDEPAVRSSISRLKRRGILV 75 Query: 72 VSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQ 129 SR G + Y LS++ L + R + +I+ E+ WLL + + + ++ Q Sbjct: 76 ASRQGGAAGYVLSEQALEILREGDERIFSQERATAADGWLLAVFSVPESQRQKRHVLRTQ 135 Query: 130 LIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEEC 189 L GFG +AP + +P+ A + L + F + ++ LR +V + Sbjct: 136 LTRLGFGTVAPGVWIAPAHLHAAATSALRRFELDSYAELFRSD---HVAFGDLREKVAQW 192 Query: 190 WHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 W L + +Y F+ P++ + AF + ++ +RR+ DP LP + Sbjct: 193 WDLEQLQELYGRFVGVHEPVLRRWQRRRSRR-EREAFLDYVRVLTDWRRLPYLDPGLPAD 251 Query: 250 LLPAHWAGHTARQLCINIYQRVAPAALAFVSEK 282 LLPA W G A +L ++ + A A+V E Sbjct: 252 LLPAEWNGAVAAELFFSLRASLQEQAHAYVDEV 284 >UniRef50_A6UH21 Transcriptional regulator, PaaX family n=3 Tax=Rhizobiaceae RepID=A6UH21_SINMW Length = 305 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 90/303 (29%), Positives = 126/303 (41%), Gaps = 20/303 (6%) Query: 5 DTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRL 64 I+ ++ VP+ S I ++YGD + RGG IW+G+L + G+G E VRTA+ RL Sbjct: 13 SKAIREILDEVPLRAASFIVTIYGDVVEPRGGAIWIGNLIEICAGVGISETLVRTAVSRL 72 Query: 65 NKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLA 124 G L R GRRSFY L+D A I+ P + W + G Sbjct: 73 VAAGRLAGEREGRRSFYRLTDAARTEFAGAARVIFG---PPEEASWHFVQLMGSSAEDR- 128 Query: 125 DVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRA 184 L G+ L+P L + L F A+I A L+A Sbjct: 129 --MLMLERSGYARLSPRLAIGVRPFPTAIMPAL----------VFRAEI--AEGAEELKA 174 Query: 185 RVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDP 244 W L Y F+ SF+ L A +TP +LLL+H +R V L+DP Sbjct: 175 FASASWDLAPHAEAYRRFLGSFQSLAA--PADAGSMTPADCLTARLLLVHQFRFVALRDP 232 Query: 245 LLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGL 304 LP E LP W G AR+L +Y ++ A ++ + G L A +RF L Sbjct: 233 RLPAETLPEGWPGDEARRLFARLYLNLSHPADLHAAQHFVAASGPLAASTGATEERFRML 292 Query: 305 NIE 307 E Sbjct: 293 RRE 295 >UniRef50_Q0SFS4 Transcriptional repressor for phenylacetic acid degradation n=4 Tax=Actinobacteria (class) RepID=Q0SFS4_RHOSR Length = 287 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 63/282 (22%), Positives = 120/282 (42%), Gaps = 9/282 (3%) Query: 3 KLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALF 62 + ++ P S TSLI ++ G + GG + + L++ +G R A+ Sbjct: 7 PASAVLDDF-DSRPGSATSLIRTVLGAYVRDLGGWVAIADFVELMQAVGIPSESTRIAVA 65 Query: 63 RLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--K 120 RL K+G L RS Y ++++ + RR + +I+ Q + W L+ + + Sbjct: 66 RLKKKGVLRPLTRDGRSGYEVTEQAEAMFRRGDPRIFGFRQMSETDPWRLISFTIPESQR 125 Query: 121 STLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRA 180 + ++++L W G G ++P L +P +VQ ++ G+++ V F + Sbjct: 126 AVRHQLRRRLGWIGCGTVSPGLWIAPEYLAREVQDIVDALGLSEYVTTFVSTSVFVPDS- 184 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 + W L A + F+ R + AA+E++P AF + L+ +R + Sbjct: 185 -MGDAATRWWDLDGIAARHRDFLDRHR----VALSAAEEVSPREAFVRFVPLLDEWRIIP 239 Query: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEK 282 DP LP +LP W G + +L + R + +V Sbjct: 240 YIDPGLPAGMLPEDWPGADSVRLFASARDRYLDGSRDWVRSV 281 >UniRef50_Q8L3B8 PadR protein (Fragment) n=1 Tax=Azoarcus evansii RepID=Q8L3B8_AZOEV Length = 205 Score = 216 bits (550), Expect = 9e-55, Method: Composition-based stats. Identities = 73/200 (36%), Positives = 111/200 (55%), Gaps = 1/200 (0%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 L+ +I + V SLI ++YGD ++ GG +WLGS L+E LG ER VRT+++R Sbjct: 6 LEQWINDYLAERRVRANSLIITVYGDFIAPHGGTVWLGSFIRLVEPLGLNERMVRTSVYR 65 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLL-SEGLDKST 122 L+++ WL+ +IGR+S+YSL+ G R A +IY Q W+G+W L++ L Sbjct: 66 LSQDNWLESEQIGRKSYYSLTASGRRRFEHAYRRIYDTPQDTWNGEWQLVVLPSTLGSPE 125 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 ++K+L W G+G +AP +M PS +Q +L + G D V+ +A ALS L Sbjct: 126 RDTLRKELSWAGYGNVAPGVMGHPSPDTETLQEILQDTGTQDKVVPMQASTIGALSTKPL 185 Query: 183 RARVEECWHLTEQNAMYETF 202 + ECW+L A Y F Sbjct: 186 QDLARECWNLDAIEATYSEF 205 >UniRef50_C8X827 Transcriptional regulator, PaaX family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X827_NAKMY Length = 276 Score = 216 bits (550), Expect = 9e-55, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 114/277 (41%), Gaps = 12/277 (4%) Query: 11 AVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWL 70 P S +S+I S G L GG I + L L G E VR AL RL G+L Sbjct: 10 LPPDRPGSPSSVIVSFAGSFLREIGGAIAVSDLIRCLAAAGVAEPAVRQALSRLKARGFL 69 Query: 71 DVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGL--DKSTLADVKK 128 D R+ R+ Y L+ GL + +I+ + W+L + +++ ++ Sbjct: 70 DPDRVDGRAGYRLTAAGLADLNSGDRRIFHRPSTSEADGWVLAVFSVPESERAQRHRLRS 129 Query: 129 QLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEE 188 +L W GFG +A + A+P + +L A + V F+A + +V + Sbjct: 130 ELSWLGFGTVAAGVWAAPRHLAEPTRQVLAAADLDHYVTWFQAHHLSPI-------QVGQ 182 Query: 189 CWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPE 248 W L YE F++ + + E ELT E+AF L +I +R DP LP Sbjct: 183 WWDLPALRDQYEQFLRQHSSDLAVPDE---ELTDEQAFAHYLRVIDSWRVFPRIDPGLPA 239 Query: 249 ELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGET 285 LLP W A +++ R A LA V Sbjct: 240 TLLPPDWPAAQAWSTFASLHDRWAQRGLAHVWAVVAG 276 >UniRef50_B8IKF5 Transcriptional regulator, PaaX family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IKF5_METNO Length = 292 Score = 216 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 140/302 (46%), Gaps = 17/302 (5%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 + + I P+ SL+ +++GD++ RGG + L SL A+ L G+ VRTAL Sbjct: 3 AYVQVLIDQFHRRTPIRAGSLVVTVFGDAVVPRGGVLSLESLLAITRALRIGDGVVRTAL 62 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS 121 RL +GW ++GR SFY L+ +G +A +IY + W G++ LLL +G + Sbjct: 63 SRLVADGWFARRKVGRNSFYRLTPEGAEPFAQATRRIYDSAPQPWSGRFDLLLLDGAE-- 120 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA 181 ++ L G+GAL P LM + + L A Sbjct: 121 DRPGLRADLAAAGYGALGPDLMIGAVAQAGEGAFLRLAA--------------TPEDPET 166 Query: 182 LRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVL 241 R W L A Y F+ +F P L E + A ++LLLIH YRRVVL Sbjct: 167 ARRLAARAWPLDAVGARYARFVAAFGPAAASLAEG-ERPDDLHALVLRLLLIHEYRRVVL 225 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 +DP LP LLP W G AR LC +Y+ + PA+ ++S T G LP PG + +RF Sbjct: 226 RDPGLPACLLPEDWPGEAARDLCGRLYRSLLPASERWLSAHARTDEGPLPPPGPAFAERF 285 Query: 302 GG 303 Sbjct: 286 AA 287 >UniRef50_C1XSN8 Phenylacetic acid-responsive transcriptional repressor n=2 Tax=Meiothermus RepID=C1XSN8_9DEIN Length = 259 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 16/273 (5%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + S + +LY + L G W+G L +E LGF E VR A+ R K GW+ + G Sbjct: 1 MRARSTLFTLYMEYLYP-GNRAWVGDLIRWMEALGFSEPAVRAAVSRSVKSGWIIPEKDG 59 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQG 134 R+++Y LSD+ + ++Y+ WDG+W +L+ + ++ + +L+ G Sbjct: 60 RKAYYRLSDRVAWQVEQVRDRLYQN-VGQWDGQWRILIYAVPEAKRTVRDRFRNELVLLG 118 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 FG +P + SP+ L + L+ G+ V F+AQ A + V + ++L Sbjct: 119 FGTPSPGVWVSPTASLEAARDLVRFYGLGGYVELFQAQRFTAGNPL---ELVRKAYNLDA 175 Query: 195 QNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 Y F++ + TPE AF L+H R+++ DP LP EL P Sbjct: 176 AQQRYREFVRLH---------PFNPKTPEEAFVRLTRLVHEARKLLFLDPGLPPELTPPG 226 Query: 255 WAGHTARQLCINIYQRVAPAALAFVSEKGETSV 287 + G A Q + ++ A + + + Sbjct: 227 FLGPEAHQRFLELHAYFGQKARPMLERESAAAD 259 >UniRef50_UPI0001B54B27 repressor in the phenylacetic acid catabolic pathway n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B54B27 Length = 296 Score = 213 bits (542), Expect = 7e-54, Method: Composition-based stats. Identities = 78/275 (28%), Positives = 120/275 (43%), Gaps = 16/275 (5%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 S SL+ ++ G+ + R +W L L L E+ R AL R EGWL RIGR Sbjct: 31 SARSLLMTVLGEYVLPRDRPVWTSILVESLRMLDIEEKSARQALARSAGEGWLVSERIGR 90 Query: 78 RSFYSLSDKGLRLTRRAESKIYR--AEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQ 133 R +SL+ G RL +IY + W+ +WL+L+ + + ++ +L W Sbjct: 91 RVRWSLTPPGRRLLTEGAERIYAFGRDARPWENRWLMLIVSVPEAKRDLRHRLRTRLTWA 150 Query: 134 GFGALAPSLMASPSQ-KLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GFG+ + SP + + Q ++ E G+ + F ++ + + V W L Sbjct: 151 GFGSPVAGVWVSPDPSREPEAQKIVAELGLEAQAMSFTSEY---GAIGDQESMVARSWDL 207 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 +E YE FI F + P +A Q L+H +RR DP LP ELLP Sbjct: 208 SELTDRYEDFIDRFTGVSPSGDQAV--------LRAQTELVHEWRRFPFLDPQLPAELLP 259 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEKGETSV 287 A W+G A +L + PAA A+ + Sbjct: 260 ASWSGTKAAELFHRKHVEWRPAAQAYWDQLTANEE 294 >UniRef50_C7MUF0 Phenylacetic acid-responsive transcriptional repressor n=5 Tax=Actinomycetales RepID=C7MUF0_SACVD Length = 292 Score = 213 bits (542), Expect = 8e-54, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 16/285 (5%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 +L+ + +G + RG ++ S+ +L LG E R+ L R+ + G L +R G Sbjct: 20 PRPQTLLLTFFGGYVLRRGVQVATASVLDVLRRLGVSEHATRSTLSRMARRGLLYRTRRG 79 Query: 77 RRSFYSLSDKGLRLTRRAESKIYR--AEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIW 132 R + L+ + + E +I+ A WDG W LL + + ++ +L+W Sbjct: 80 RNVYLGLTPRLREILHDGEYRIWHMGAVNTQWDGTWTLLGFSLPESWQRQRHVLRSRLLW 139 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GFG+L L +PS D +L+ A++V F+A+ AL + V W L Sbjct: 140 AGFGSLQGGLWIAPSP--VDTDAVLNGLEAAEHVKVFQAR---ALPPTDVSELVRNTWDL 194 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 A Y F+ + + + QLLL + + + +DP LP+E LP Sbjct: 195 AAVAAHYRRFLHRWSGPTLPAAQT-------DSLGRQLLLETEWLQTIRQDPRLPKEHLP 247 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLY 297 W A+QL ++ + PAA A +E +T E+ A Sbjct: 248 HDWPAVRAQQLFHLLHAELDPAARATAAEVLDTIPDEVGASDPDT 292 >UniRef50_UPI0000F2FC7D PaaX n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F2FC7D Length = 227 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 92 RRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLMASPSQKLA 151 +AE +IY + WD W L+L LD A +KK+L W GF ++ +LMA P Sbjct: 1 MQAEQRIYNDQMKEWDHYWDLILMSSLDTENKALLKKELEWLGFANISTNLMAYPGCNRI 60 Query: 152 DVQTLLHEAGVADNVICFEAQIPLALSRA--ALRARVEECWHLTEQNAMYETFIQSFRPL 209 ++Q LL + +++ V+ F+A+ + + + + W + E Y F+ FR + Sbjct: 61 ELQRLLVDLNMSEQVVVFKAETLQLFNNSVDTIGRMLRTNWPIDELRQRYLQFLDIFREI 120 Query: 210 VPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQ 269 LL + ++L P +AF I+ LLIH+YRR++LKDP LP ELLP W +AR L +NIY+ Sbjct: 121 GVLLMQENEQLEPVQAFQIRTLLIHYYRRILLKDPALPLELLPTDWPAISARTLSMNIYK 180 Query: 270 RVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEAL 311 +V A + T+ G +P + Y++RFGGL E L Sbjct: 181 KVFEPADEYFLSVAATAEGPMPNATAHYWRRFGGLVATNERL 222 >UniRef50_A1RBT3 Putative transcriptional regulator, PaaX-like protein family n=1 Tax=Arthrobacter aurescens TC1 RepID=A1RBT3_ARTAT Length = 294 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 128/295 (43%), Gaps = 16/295 (5%) Query: 11 AVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWL 70 AV A PV L+ +++G + G + + +L ++L LG+ VR+++ RL +G L Sbjct: 3 AVPAPPVRHQQLLVTIFGLYGRNAGDALPVSALISMLGSLGYDAPGVRSSVSRLKSKGVL 62 Query: 71 DVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKK 128 R G + Y +S+ + R + +I+ EQPA W+L + + ++ ++ Sbjct: 63 KSVREGGIAKYKISESVSDVFREGDRRIFAPEQPAPVDTWVLAVFSVPESMRNRRHQLRS 122 Query: 129 QLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEE 188 L+ GFG++A + +P+ KL + L + + + V F + +R ++ E Sbjct: 123 ALLGLGFGSVANGVWIAPAHKLEQARERLTASDLIEFVDLFRSDYVF---DGPMRPKISE 179 Query: 189 CWHLTEQNAMYETFIQSFRPLVPLLKEAADELTP-----------ERAFHIQLLLIHFYR 237 W L E + + F++ + E + AF + ++ +R Sbjct: 180 WWDLKELDDQFTEFLELYDGAEQQWAERVGDDPEVAVAESTEELRRDAFRYYIPMLTMWR 239 Query: 238 RVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPA 292 + +DP LP + LP W G R+ +++ AP A A E ++ A Sbjct: 240 KFPYRDPNLPADYLPPEWHGPAVRRTFQAVHRLAAPLAAAHAHEVIAEALNPAAA 294 >UniRef50_Q07SZ1 Phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07SZ1_RHOP5 Length = 289 Score = 209 bits (533), Expect = 7e-53, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 134/299 (44%), Gaps = 16/299 (5%) Query: 3 KLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALF 62 L I P SLI + +GD++ RGG +WLG+L L L VRTA+ Sbjct: 5 PLSRIIGRF-KREPSRTGSLIITFHGDAILPRGGSVWLGTLLRFLAMLEIDGGVVRTAVS 63 Query: 63 RLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKST 122 RL +GWL ++GR+SFY L+ G A +Y WDG+ LLL Sbjct: 64 RLAADGWLARDKVGRKSFYRLAPTGRERFELAVQHVYNPRSAPWDGRLDLLLIGNGTDRE 123 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 A GFG+ P + +PS V +V ++ + Sbjct: 124 AARAAL--AEAGFGSPMPGVWVAPSG------------TVVPSVAADAIRLDVTADSETG 169 Query: 183 RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLK 242 R ++ W L A Y F ++F PL D + + A ++LLIH YRRV+L+ Sbjct: 170 RRLIDASWSLESIAAAYRDFRKTFAPLEA-WIGTDDAPSSDDAMLARVLLIHHYRRVLLR 228 Query: 243 DPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 DPLLPE LLP W AR+ C +Y+ + PA+ ++ GE+ G LP PG RF Sbjct: 229 DPLLPEALLPPDWPAREAREFCGRVYRALLPASEQWLEAYGESLNGALPPPGPELKARF 287 >UniRef50_C1RIS8 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RIS8_9CELL Length = 318 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 73/294 (24%), Positives = 117/294 (39%), Gaps = 11/294 (3%) Query: 9 QHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEG 68 S SL+ +L GD + + +L LL G + R AL R+ K G Sbjct: 7 ARTPRTREGSPPSLLITLLGDYWWGQTDPLPSAALVDLLADFGVSDVAARAALSRMVKHG 66 Query: 69 WLDVSRIGRRSFYSLSDKGLRLTRRAESKIYR---AEQPAWDGKWLLLLSEGLD--KSTL 123 + +R GRR+FY+++ + + R +I R + WDG+W L+ + ++ Sbjct: 67 LVVSARSGRRTFYAMTPRAQGIMRAGAERIVRFGVDDGTGWDGRWSLVAFSVPEANRAAR 126 Query: 124 ADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALR 183 ++ +L W GF L +L SP + + L GV F A P + A Sbjct: 127 EALRTRLRWLGFAPLYDALWISPHPRHDEALAELGALGVT-RATAFVATCPPLPAAALAP 185 Query: 184 ARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKD 243 W L Y TF+ ++ P L + A ++P A + L+ +R D Sbjct: 186 E---SAWDLDGLAERYRTFVTTWEPTHAALSKGA--ISPVDALVKRTELMDAWRAFPGVD 240 Query: 244 PLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLY 297 P LP LLPA W AR L + Y+++ A V + L + Sbjct: 241 PDLPRRLLPADWPRDRARDLFLETYEQLGAPASVRVRQVIGGYAPALADRVVQF 294 >UniRef50_C7QFV2 Transcriptional regulator, PaaX family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QFV2_CATAD Length = 281 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 75/269 (27%), Positives = 117/269 (43%), Gaps = 16/269 (5%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 S SL+ +L G+ + W ++ L G E+ R AL R + EGW+ R+ R Sbjct: 20 SARSLLMTLLGEYVLPHERPTWTSTIIEALSADGVEEKAARQALARTSAEGWITTERVSR 79 Query: 78 RSFYSLSDKGLRLTRRAESKI--YRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQ 133 R +SL+ +G +L +I + PAWDG+WL+LL + + ++ +L W Sbjct: 80 RVRWSLTPEGRQLLTEGAERIFSFGRTTPAWDGRWLMLLVTVPETRRDLRHRLRTRLTWA 139 Query: 134 GFGALAPSLMASPSQ-KLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GFG P + +P + + + +L + + + F A S +L A V W L Sbjct: 140 GFGTADPGVWINPDPAREDEAREVLRDLDLDQGAMSFTA---AHGSIGSLAAMVARAWDL 196 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 + A YE F+ +F L P T Q L+H +RR DP LP ELLP Sbjct: 197 STLEAEYEAFVSAFGALTPD--------TDAATLRTQTRLVHEWRRFPFLDPRLPRELLP 248 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSE 281 A W G A ++ + A + Sbjct: 249 ADWTGAKAVEVFHARHAEWHEKAQREWAA 277 >UniRef50_C4DKB7 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DKB7_9ACTO Length = 260 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 111/254 (43%), Gaps = 15/254 (5%) Query: 15 VPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR 74 + S SLI +++G GG + + L +L L + VR A+ RL + G L+ S+ Sbjct: 1 MASSPRSLIVTVFGLYAREAGGTLPVSGLVRVLATLSVDTQAVRAAVSRLKRRGMLEPSK 60 Query: 75 IGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIW 132 + + Y+L+ G RL +++I+ + W+L + + ++ ++ +L W Sbjct: 61 VDGAAGYALTGSGRRLLAEGDARIFHPPRAELSDGWVLCVFSVPETMRAKRHVLRGKLTW 120 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GFG AP + +P+ + + +L +A V F + A + + W L Sbjct: 121 LGFGQAAPGVWIAPAHTMDAARAMLAANDLAGYVNLFRSDY---CGDAPVAEAARQWWDL 177 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 AMY FI + R + ++A + + +R++ DP LP ELLP Sbjct: 178 PRLEAMYREFIDALRG----------DPGADQALPAWIRAVTDWRKLPFLDPGLPRELLP 227 Query: 253 AHWAGHTARQLCIN 266 A W GH A L Sbjct: 228 ADWPGHDAVTLFGE 241 >UniRef50_B8IM94 Transcriptional regulator, PaaX family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IM94_METNO Length = 301 Score = 208 bits (528), Expect = 3e-52, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 132/303 (43%), Gaps = 21/303 (6%) Query: 5 DTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRL 64 + + VP+ S I +LYGD + RGG +W+G++ E +G E VRTA+ RL Sbjct: 14 GALLSRLIEKVPLRSGSFIVTLYGDVVEPRGGRLWMGNIVDTCEAVGISETLVRTAVSRL 73 Query: 65 NKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRA-EQPAWDGKWLLLLSEGLDKSTL 123 G L R GRRSFY L++ R A ++ ++ W W LD Sbjct: 74 VSAGQLTGERQGRRSFYRLTEAARREFLSAARILFEPHDETGWRFVW-------LDPDRS 126 Query: 124 ADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALR 183 + L G+ L P P+ +A ++ FE A + LR Sbjct: 127 GEGGPMLEQAGYVRLGPQWFLGPAH----------QALSDPSLAIFEGTT--AAAGPVLR 174 Query: 184 ARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKD 243 W + NA Y+ F+ +F P+ L + + +A H++LLL+H YR L+D Sbjct: 175 RLAAAHWDIASFNAAYDAFLAAFAPVSEALAKGV-RPSDAQALHLRLLLVHTYRLAALRD 233 Query: 244 PLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGG 303 LP E LP W+GH AR+L ++Y R++P A V + LPA +R Sbjct: 234 ARLPAETLPPDWSGHRARRLFADLYLRLSPGADRHVGHHLLSGESTLPAESPEVSRRLTA 293 Query: 304 LNI 306 L Sbjct: 294 LAR 296 >UniRef50_D0DCP9 Transcriptional regulator, PaaX family n=1 Tax=Citreicella sp. SE45 RepID=D0DCP9_9RHOB Length = 290 Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 124/289 (42%), Gaps = 23/289 (7%) Query: 22 LISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFY 81 I +LYGD + RGG +W+GSL G E VRTA+ RL G L+ RIGR+S+Y Sbjct: 25 FIVTLYGDVVEPRGGMLWMGSLIECCAVHGLNESLVRTAVSRLVGAGRLEGVRIGRKSYY 84 Query: 82 SLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPS 141 LSD R A ++ D WLL LSE L + + W L+P+ Sbjct: 85 RLSDAARGEFREAARLLFSPPAAPED--WLLCLSETL-----RETEPPAPW---ARLSPN 134 Query: 142 LMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYET 201 + +P+ + A+ L A E W L E YE Sbjct: 135 VAMAPNNDDVAPLDG----------VLMRAKHLEGHG--DLHALAHETWRLDEVALAYER 182 Query: 202 FIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTAR 261 F++ L+ L+ A L+P A ++L L+H YR L DP LP P W AR Sbjct: 183 FLERHSGLLDRLEGDAP-LSPSVALALRLRLVHDYRHAALSDPRLPRAACPQDWPAERAR 241 Query: 262 QLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEA 310 QL ++ Y ++ A AFV + + G L A + +R L E A Sbjct: 242 QLFVSAYVGLSAPAEAFVGTQFLSPDGALAARNAETERRLFQLKREAAA 290 >UniRef50_Q2HWJ0 Putative transcriptional regulator n=1 Tax=Nocardioides aromaticivorans RepID=Q2HWJ0_9ACTO Length = 266 Score = 204 bits (518), Expect = 5e-51, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 106/268 (39%), Gaps = 13/268 (4%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 +++ + G + G + + L+ +G +RTA+FRL + GWL+ Sbjct: 4 RSRTVVVTFLGAIVRPMGDWMPIAGAVDLMTQVGVDAASLRTAVFRLKERGWLESQTRHG 63 Query: 78 RSFYSLSDKGLRLTRRAESKIYRAEQPA-WDGKWLLLLSEGLD--KSTLADVKKQLIWQG 134 Y+L+D L + I+ A QPA W ++ + +S ++ L G Sbjct: 64 ARGYALTDHALATLTAGDEVIWHARQPADLHAGWCIINFSVPESIRSKRYQLRSHLSALG 123 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 FG + ++ +P++ + + E G+ + F + L + E W L Sbjct: 124 FGNIGTAMWIAPARMRGAAEQAVAELGLDKHAAIFVGDY---VGTQDLTGLLYESWDLAG 180 Query: 195 QNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 + Y FI + + A P AF L L+ +RR+ +DP LP E+L + Sbjct: 181 IDRSYREFIDEYADI-------APPSEPRPAFATYLGLVDHWRRLPFRDPGLPREVLGSD 233 Query: 255 WAGHTARQLCINIYQRVAPAALAFVSEK 282 W+ A + + + A+ + Sbjct: 234 WSAPEATAVFERLVATLEKPAIEHAAAY 261 >UniRef50_A8LCV5 Transcriptional regulator, PaaX family n=1 Tax=Frankia sp. EAN1pec RepID=A8LCV5_FRASN Length = 333 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 69/280 (24%), Positives = 114/280 (40%), Gaps = 10/280 (3%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 L+++L GD + R + L +LL R AL RL++ G L+ SRIGR Sbjct: 52 QPQHLLTTLLGDYWAGRREHVPSVVLVSLLADFDVSTVGARAALSRLSRRGLLESSRIGR 111 Query: 78 RSFYSLSDKGLRLTRRAESKI--YRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQ 133 ++Y L+ + + ++I + WDG+W + + + V+ +L W Sbjct: 112 NTYYGLTAEASAAILASANRIFTFGLRHDPWDGRWTVAAFSIPEDQRDVRHAVRARLRWL 171 Query: 134 GFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLT 193 GF L + +P + + E GV + + A W LT Sbjct: 172 GFAPLYDGMWVTPRSAGEAARRVFAELGVIASTVLITTSEARRSDPRPPMA----AWDLT 227 Query: 194 EQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPA 253 E YE F++++ PL+ ++ E+ A + ++ + R DP LP +LLP Sbjct: 228 ELQRTYEEFVRTYTPLLERVRHG--EVCGAEALAARTAVMESWGRFPSLDPDLPIDLLPG 285 Query: 254 HWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAP 293 W AR + IY +A A+A V E EL Sbjct: 286 RWPRREARTVFAEIYDGLAVPAVARVRELLAEVSPELADL 325 >UniRef50_UPI0001C31D78 transcriptional regulator, PaaX family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D78 Length = 289 Score = 199 bits (506), Expect = 9e-50, Method: Composition-based stats. Identities = 69/268 (25%), Positives = 108/268 (40%), Gaps = 8/268 (2%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 L+ +L G + R +W G L ALLE +GF R AL RL + + R GR Sbjct: 22 QPQELVMTLLGSYVRSRHETVWSGGLVALLEEMGFSTGASRVALTRLVRRDLIARERSGR 81 Query: 78 RSFYSLSDKGLRLTRRAESKIYR-AEQPAWDGKWLLLLSEGLDKSTLADVK--KQLIWQG 134 Y ++++ ++ + +I+ G W +L + + L + ++L + G Sbjct: 82 LIHYRITERADQVLAEGDRRIFSLGRADTLAGGWTMLWHDIPEAQRLERGRLARRLRFLG 141 Query: 135 FGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTE 194 FG L L SP + +V LL E GVA+ + AA V W L Sbjct: 142 FGTLQDGLWISPHDREQEVVPLLEELGVAERAGVLVGDVAAMPGTAA---LVRRAWDLDA 198 Query: 195 QNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAH 254 Y F F P + A + AF ++ ++H +R DP LP+EL+P Sbjct: 199 LCERYRAFAVQFAP--HARRRGAPRVDDREAFLVRTRIVHLFRGFPFLDPDLPDELMPDP 256 Query: 255 WAGHTARQLCINIYQRVAPAALAFVSEK 282 A A + Y+R+A A Sbjct: 257 RARRRAVDVFDAAYERLAEPAQRHFDAV 284 >UniRef50_D1BV77 Transcriptional regulator, PaaX family n=2 Tax=Actinomycetales RepID=D1BV77_XYLCX Length = 302 Score = 199 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 62/279 (22%), Positives = 110/279 (39%), Gaps = 8/279 (2%) Query: 5 DTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRL 64 DT Q + + + G + GG + LL G + VRTA+ RL Sbjct: 23 DTGTQDTGAQATRRSRTTVVTFLGAVVRPLGGWTPIAGAVELLSQCGLDDPGVRTAIHRL 82 Query: 65 NKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAE-QPAWDGKWLLLLSEGLD--KS 121 ++GWL Y+L++ + I+ A PA W ++ + ++ Sbjct: 83 KRKGWLASQTRDGVRGYALTETATATLAAGDEVIWHARTPPALADGWCIVNFSVPESKRA 142 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA 181 ++ L GFG + ++ +P++ + E G+ F Sbjct: 143 LRHQLRAHLAALGFGNIGTAVWIAPARMRPAAARAVAELGLEPFTTIFTGDY---HGPQD 199 Query: 182 LRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVL 241 L + W L + Y F+ ++ L ++EAA + AF + L +I +RR+ Sbjct: 200 LTTLAYDSWDLAAIDQGYRGFVDAYGDLASRIEEAAP--SGREAFTLHLQMIDAWRRLPF 257 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVS 280 +DP LP E+L A W G +A +L + + ALA + Sbjct: 258 RDPGLPREVLAADWPGPSAARLFERMVAVLEAPALAHAA 296 >UniRef50_UPI0001B5864E repressor in the phenylacetic acid catabolism n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B5864E Length = 271 Score = 195 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 112/276 (40%), Gaps = 14/276 (5%) Query: 14 AVPVSGTSLISSLYGDSLSHRG-GEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDV 72 + L+ +L G + R +W G L ALL LGF + R AL RL + G L Sbjct: 5 EPARTPQELVMTLLGSYVRPRESRRVWSGGLVALLHELGFSDGAARIALTRLVRRGLLSR 64 Query: 73 SRIGRRSFYSLSDKGLRLTRRAESKIYR-AEQPAWDGKWLLLLSEGLD--KSTLADVKKQ 129 R GR YSL+ + + L + +I+ + G W +L + + + + ++ Sbjct: 65 HREGRLVHYSLTSRTVALLDDGDRRIFGLGRRDEPAGTWTVLWQNIPETRRKSRERLVRR 124 Query: 130 LIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEEC 189 L + GFG + +P + A+V LL E VA+ AL +R Sbjct: 125 LRFLGFGPVQDGTWLAPHDREAEVLALLSELEVAEYAGLMLGTPSAAL---DVRRLAGRA 181 Query: 190 WHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 W L +A Y F+ F L AF ++ L+H YR DP LP E Sbjct: 182 WDLDGLSARYAAFVAEFGG-------TPRGLGDPEAFAVRTRLVHTYREFPSLDPELPSE 234 Query: 250 LLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGET 285 L+PA A +L ++Y +AP A T Sbjct: 235 LIPAPGTRAAAVKLFHDLYSALAPPAQRHFDRTLST 270 >UniRef50_C7QAQ9 Transcriptional regulator, PaaX family n=11 Tax=Actinomycetales RepID=C7QAQ9_CATAD Length = 267 Score = 194 bits (493), Expect = 3e-48, Method: Composition-based stats. Identities = 68/271 (25%), Positives = 104/271 (38%), Gaps = 9/271 (3%) Query: 15 VPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR 74 + SLI S +G GG I + L LL LG VR+A+ R + G+L + Sbjct: 2 KAPTPRSLIVSFFGAYGRELGGWIAVADLVTLLGRLGVDAPAVRSAVSRQKQRGFLQARQ 61 Query: 75 IGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS--TLADVKKQLIW 132 + YSLS + + + +IY + W+L + + ++ +L Sbjct: 62 ADGVAGYSLSPEAEEILADGDRRIYLRQDVQLSDGWVLAVFSVPETERHRRHLLRSRLSR 121 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GFG AP + +PS + + L +A V F A + A LR W L Sbjct: 122 LGFGTTAPGVWIAPSHLAEEARHTLERLELAAYVDLFHADYL---AYADLRDSAARWWDL 178 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 A Y F F A D L + +RR+ +DP LP ELLP Sbjct: 179 GAVQAGYAEFSAQFLATDTDTDSADDADAFA----TYLRALDAWRRMPYRDPGLPPELLP 234 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEKG 283 W G A + ++ R+ L++V Sbjct: 235 QDWQGTQAADIFFGLHDRLRGRGLSYVKSVV 265 >UniRef50_A1BBH9 PaaX domain protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BBH9_PARDP Length = 284 Score = 194 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 87/298 (29%), Positives = 133/298 (44%), Gaps = 29/298 (9%) Query: 7 FIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNK 66 I + + + + I ++YGD + RGG +W G+L + E +G E VRTA+ RL Sbjct: 11 LIDGILEGMALRSAAFIVTVYGDVVVPRGGVLWTGTLIEVCERVGISESLVRTAVSRLVA 70 Query: 67 EGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADV 126 L R+GRRS+Y L R +A +Y+ E PA W +L + L + Sbjct: 71 AHRLRGERLGRRSYYRLDASAQREFDQAARLLYKPEVPA--RGWQILHAPDLTEDEARHQ 128 Query: 127 KKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARV 186 + G + ++ P + V + + F A P L R+ Sbjct: 129 R-------MGHMGGAVFIRPDRGQP----------VPEGALPFLASDPPELG------RI 165 Query: 187 EECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLL 246 + W L+ + Y + F PL EA L+ E A +LLL+H YR V+L+DP L Sbjct: 166 GQFWDLSALHQRYLDMLVRFAPLA----EAGAALSDEMALIARLLLVHDYRGVLLRDPRL 221 Query: 247 PEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGL 304 P+ LP W GH AR L +Y++++PAA ++ E S G LP + R L Sbjct: 222 PQPALPPDWQGHEARALFRRLYRQLSPAAERWIGTHFEGSGGFLPEKTAESEARLADL 279 >UniRef50_UPI000050F8F1 PaaX family transcriptional regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F8F1 Length = 275 Score = 193 bits (491), Expect = 5e-48, Method: Composition-based stats. Identities = 65/277 (23%), Positives = 108/277 (38%), Gaps = 13/277 (4%) Query: 22 LISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFY 81 ++ + G L GG I + +L LL G R+A+ RL +G L + + Y Sbjct: 1 MLRTFVGLHLRDLGGWIRVAALLDLLATAGVSNSSTRSAVSRLKGKGLLIPDKREAVAGY 60 Query: 82 SLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGALA 139 L + R + +I+ D W L+ + +S +++ L+ GFGA+ Sbjct: 61 RLDSAAVSGLERGDRRIFTYRGQRDDEPWCLVSYSLPEVDRSKRVQLRRTLMGLGFGAVT 120 Query: 140 PSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMY 199 L +P A+V+ L V D F Q P L+ + W L A + Sbjct: 121 DGLWIAPGHLRAEVEDALVGLDVRDRATIFITQTP--LTAEPFAQAAAKWWQLDTLAARH 178 Query: 200 ETFIQSFRPLVPLLKEAAD---------ELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 F++ + PL + +A L P AF + L + ++ + DP LP Sbjct: 179 TEFLRRYEHAAPLSENSAPLPENSAPKSSLEPREAFVLWLHCVDEWKAIPYVDPGLPPSA 238 Query: 251 LPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSV 287 LP+ W G + +L + + A A A V E Sbjct: 239 LPSDWPGMRSVELFAQLRRTQAEPARAHVREISSAES 275 >UniRef50_A3K7C6 Putative regulator of phenylacetic acid degradation, ArsR family protein n=1 Tax=Sagittula stellata E-37 RepID=A3K7C6_9RHOB Length = 269 Score = 192 bits (489), Expect = 9e-48, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 121/287 (42%), Gaps = 26/287 (9%) Query: 24 SSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSL 83 ++YGD + RGG +W+G+L G E VRTA+ RL G L+ RIGR+S+Y L Sbjct: 1 MTIYGDVVEPRGGALWIGTLIECCGRHGLNETLVRTAVSRLVASGNLEGVRIGRKSYYHL 60 Query: 84 SDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLM 143 S+ R A ++ A D WLL L+ D W L+P++ Sbjct: 61 SESAREEFREAARLLFLPSPDARD--WLLSLTGAGDLPP--------PWM---RLSPTVA 107 Query: 144 ASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFI 203 +P++ + A+ A LR+ E W L + YE F+ Sbjct: 108 IAPNRDDVAPVDG----------VLMRAEQIGAHG--DLRSLAREKWALDDVARAYEAFL 155 Query: 204 QSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQL 263 + + L+ + L+PE A +L L+H YR LKDP LP P W AR+L Sbjct: 156 ERHQSLLDG-RGTVSSLSPEEALARRLRLVHDYRHAALKDPGLPRGACPTDWPAERARRL 214 Query: 264 CINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEA 310 + +Y ++ A FV E G L + +R L E A Sbjct: 215 FVTVYLGLSAMADEFVGETFLNDNGALSSRTDETERRLARLESEAAA 261 >UniRef50_A4X2T5 Transcriptional regulator, PaaX family n=9 Tax=Actinomycetales RepID=A4X2T5_SALTO Length = 272 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 77/270 (28%), Positives = 113/270 (41%), Gaps = 9/270 (3%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + S + LYGD L RGG + +L LL LG VRTA+ R+ ++GWL+ R+ Sbjct: 1 MQARSALFDLYGDHLRPRGGRAQVAALVKLLAPLGIAPPAVRTAVSRMVRQGWLEPLRMA 60 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGL-DKSTLADVKKQLIWQGF 135 YS++ K R A ++IYR + WDG++ LL+ + + L + G+ Sbjct: 61 TGPGYSITPKAARRLDEAATRIYRTGKTGWDGRFDLLVVAAPAARRERQRLAANLSFLGY 120 Query: 136 GALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQ 195 G L + V LL EAGV A V W L E Sbjct: 121 GMLDECTWVATRPGED-VDLLLDEAGVRYE----RFTAAHAAGTPGAMGVVRRAWDLAEI 175 Query: 196 NAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHW 255 YE F+ R L+ + + E A+ + L+H +R + +DP LP LLP W Sbjct: 176 GQAYEQFVAEQRALLAGVTVRSP---DEEAYAARFRLVHAWRTFLFRDPQLPPALLPERW 232 Query: 256 AGHTARQLCINIYQRVAPAALAFVSEKGET 285 G A R+ PAA +V + Sbjct: 233 PGTAAGSFFDRHAARLRPAADRYVEACLDA 262 >UniRef50_UPI0000510548 transcriptional regulator, PaaX family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510548 Length = 271 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 62/279 (22%), Positives = 115/279 (41%), Gaps = 15/279 (5%) Query: 15 VPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR 74 + V SL +L G + + S+ ++ LG GE R+ L R+ + ++ + Sbjct: 1 MTVHPQSLFFALAGLHMLDDPRPLSGASIVFVMGRLGVGESAARSVLQRMAAKNFIVRHK 60 Query: 75 IGRRSFYSLSDKGLRLTRRAESKIYRAEQP-AWDGKWLLLLSEGLD--KSTLADVKKQLI 131 GR++FY+LSD+G + R + K++ QP WDG+W + + + ++ + +L Sbjct: 61 EGRKTFYTLSDRGRAILREGQEKMFAGWQPQDWDGRWTFVRIQVPESKRTLRHQMASRLS 120 Query: 132 WQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWH 191 W GF + +P ++ ++ V+ E + P + + + Sbjct: 121 WAGFAQVDGGPWVAPGPHDVATILGPEQSVISPIVVYGEPKPPTSE------EMLAGAFD 174 Query: 192 LTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELL 251 L E A YE+F + +R + D L+P A ++ L + + DP LP LL Sbjct: 175 LAELAADYESFGEKWRAV------DPDSLSPVDALVKRVELHLDWLALARTDPQLPATLL 228 Query: 252 PAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGEL 290 P W G + + + VS + EL Sbjct: 229 PKGWPGAAQSISFRELDAELGTREVHAVSGFFAGDLNEL 267 >UniRef50_D1WW52 Transcriptional regulator, PaaX family n=4 Tax=Streptomyces RepID=D1WW52_9ACTO Length = 273 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 67/270 (24%), Positives = 117/270 (43%), Gaps = 10/270 (3%) Query: 18 SGTSLISSLYGDSLSHRGG-EIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRI- 75 + SLI +LYG G + L LL +G VR+ + RL + G L +R Sbjct: 6 TPRSLIVTLYGAYGRPPDGAPFAVSELIRLLHAVGVDAPSVRSCVSRLKRRGLLVAARAA 65 Query: 76 GRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQ 133 + Y+LS +L + +IYR P W+L + + ++ ++ +L Sbjct: 66 DGSAGYALSPDARQLLDDGDRRIYRRRGPRLSDGWVLAVFSVPEAERNKRHLLRSRLARL 125 Query: 134 GFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLT 193 GFG AP + +P+ + + L G+A V F + AA R V W L Sbjct: 126 GFGTAAPGVWIAPAGLYEETRHTLQRLGLAPYVDLFRGEHL---GFAATREAVARWWDLA 182 Query: 194 EQNAMYETFIQSFRPLVPLLKEAADE---LTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 ++ F++ P++ + + D P+ A+ LL + +R++ DP LP EL Sbjct: 183 AVARLHHEFLELHEPVLRDWEASGDADEAPRPQTAYRDYLLALDSWRQLPYADPGLPPEL 242 Query: 251 LPAHWAGHTARQLCINIYQRVAPAALAFVS 280 LP W G + ++ +++R+ A +V Sbjct: 243 LPGDWPGGRSAEVFDRLHERLRDAGERYVR 272 >UniRef50_A5FUP1 Transcriptional regulator, PaaX family n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FUP1_ACICJ Length = 289 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 89/302 (29%), Positives = 126/302 (41%), Gaps = 20/302 (6%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 + + P SLI +L+GD+L RG I L ++ L E LG G +RTA+ R Sbjct: 5 VAALVARLHEQ-PSHTGSLIVTLFGDALLPRGSAIALATILDLFESLGIGPGVIRTAISR 63 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTL 123 L +GWL SR GR S+Y + RA IY + ++ L E Sbjct: 64 LAADGWLVASRRGRSSYYRIGPSRRGEFIRAARHIYGRPRGTAARSLIIALPEPGP--GR 121 Query: 124 ADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALR 183 +++ GF + ++ +P + L + I A +LR Sbjct: 122 EPARERFNRLGFASWQ-GILLAPDRPLPRS--------LEAGSIVLRAT----GGPESLR 168 Query: 184 ARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKD 243 W L Y+ F+ F L A P A +LLLIH YRR+VL+D Sbjct: 169 RLAARAWRLDALCDHYKGFLAIFGGLTA----DAPAFDPRDALLARLLLIHDYRRIVLRD 224 Query: 244 PLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGG 303 P LP LP WAG AR+LC +Y+ + A+ ++S G T G LP S RF Sbjct: 225 PRLPATFLPEEWAGDGARRLCAQLYEALLDASELWLSHNGATETGALPTADSTLRHRFAD 284 Query: 304 LN 305 L Sbjct: 285 LR 286 >UniRef50_Q2HR06 Phenyl acetic acid responsive transcriptional repressor n=1 Tax=Streptomyces sp. SCC 2136 RepID=Q2HR06_9ACTO Length = 262 Score = 189 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 73/273 (26%), Positives = 116/273 (42%), Gaps = 15/273 (5%) Query: 23 ISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYS 82 + S GD + R ++ GS+ + G GE R+ L R+ L R GRR ++ Sbjct: 1 MLSFLGDQVLGRDVCVYSGSVIDVFGRAGVGEHATRSTLTRMVGRDLLRRQREGRRMYFG 60 Query: 83 LSDKGLRLTRRAESKIYRAEQ--PAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGAL 138 L+++ + R E +I+ WDG W LL + + D++ QL W GFG L Sbjct: 61 LTERSESVLRDGEQRIWEDGAVNRQWDGSWTLLGFSLPESWQRQRHDLRAQLAWSGFGPL 120 Query: 139 APSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAM 198 L +P ADV ++ E G++ +V F A + + A +EE W L E Sbjct: 121 FGGLWIAPG--EADVSAIVAELGLSAHVKIFRAHADAGM---DIGAMIEETWALGELATR 175 Query: 199 YETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGH 258 YE F ++ E + A ++L L + +VV +DP LP + LP +W Sbjct: 176 YEAFTHRWQRWET------TEPAADEALALRLRLSTEWLQVVRRDPRLPVKHLPDNWPAE 229 Query: 259 TARQLCINIYQRVAPAALAFVSEKGETSVGELP 291 A + +Y R+ P A + P Sbjct: 230 QAEKTFRTVYARLTPLARESAERLLDLVPVRAP 262 >UniRef50_A9DGK3 Phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DGK3_9RHIZ Length = 296 Score = 186 bits (472), Expect = 8e-46, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 134/302 (44%), Gaps = 18/302 (5%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 + T + +S SLI S GD++S RGGE+ G++ AL+ LG G VRTA+ R Sbjct: 11 IQTRLDTLDAGNRLSAWSLIVSFLGDAISPRGGEVSAGAVQALMARLGIGHGAVRTAISR 70 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQ--PAWDGKWLLLLSEGLDKS 121 L+ +GW++ +R GR SFY LS +RAE +IY P + L++ ++ D+ Sbjct: 71 LSADGWIERTREGRNSFYRLSPDVAETVQRAERRIYARTSCLPPECSRTLVIGADAFDQD 130 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA 181 TL L G L P L + ++L A V F AA Sbjct: 131 TLN----TLEALGALVLNPQLSLCFTAAATLPESLRPPATTLAGVSSFAPGADAIARIAA 186 Query: 182 LRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVL 241 R R + L Y VP + E+ E+ A ++ LLIH +RR+ L Sbjct: 187 ARQRAD----LEALRTAY--------APVPGMLESQTEIAAGDAMALRCLLIHEWRRIAL 234 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRF 301 + +P L+ A R L IY ++ PA+ A++ + T G LP P + RF Sbjct: 235 RVIAVPAGLVQADDPEPETRALIARIYAQLLPASEAWLDDTAATPAGALPPPDEGFATRF 294 Query: 302 GG 303 G Sbjct: 295 GR 296 >UniRef50_UPI0001B55AC7 probable phenylacetic acid degradation operon negative regulatory protein n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B55AC7 Length = 280 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 112/276 (40%), Gaps = 15/276 (5%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 L+ S++G L R +W G L LLE G R L R+ G + R G Sbjct: 12 PKPQGLLFSMFGAYLQPRTAPMWSGGLVVLLEKFGVTTATGRITLNRMVHRGLAERHRRG 71 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDG---KWLLLLSEGLD--KSTLADVKKQLI 131 R Y+LS + L L ++++ A A D W ++ D K+ ++ KQL Sbjct: 72 RAISYTLSPRALHLLEDGDNRL--ATLAAVDDTPKTWTVVWHNLGDNRKADRSNFVKQLR 129 Query: 132 WQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWH 191 + GFG L ++ ASP L +V+ G++D V F+ ++ A + W Sbjct: 130 FHGFGQLQEAVWASPKDYLREVKDYAKLLGISDEVAIFQCRLDE---ETVPAALLSHLWQ 186 Query: 192 LTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELL 251 L + YE F + L + E TPE AF ++H +R DP LP Sbjct: 187 LDDLAGHYERFAGRYAALA-----SEPEATPEEAFLACTTMLHTFRSFANLDPELPPLWT 241 Query: 252 PAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSV 287 P A A + + P A A+ +E + + Sbjct: 242 PHAGARAKALTVYREALDALRPRAAAYFTEAVDPAS 277 >UniRef50_C1RMN4 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RMN4_9CELL Length = 306 Score = 179 bits (455), Expect = 8e-44, Method: Composition-based stats. Identities = 65/276 (23%), Positives = 106/276 (38%), Gaps = 13/276 (4%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 S L++++ G+ +LAA+L G R AL RL + G + G Sbjct: 10 PSPQHLLATVLGEYFDSSDARPPAAALAAVLGEFGISPGSARAALARLVRRGLVATEGRG 69 Query: 77 RRSFYSLSDKGLRLTRRAESKI--YRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIW 132 R + Y + + + + A WDG+WL++ + + V+K L Sbjct: 70 RAATYHVRPDVIAHHQAVMHAFLSFGASPRPWDGQWLVVSYSLPESGQPQRHAVRKTLGA 129 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVA---DNVICFEAQIPLALSRAALRARVEEC 189 +GF L S+ SPS V+ L A A+ A Sbjct: 130 RGFARLYDSVWISPSFDAGAVREELRALLAAVPGARWSVMRARFDEDPDSLGPAA----A 185 Query: 190 WHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 + L A Y F++ + L ++ AD + P RA +L ++ +R DP LPE Sbjct: 186 YDLDGLAASYRAFVEEYAGLRDDVR--ADRVGPARALVARLSVMDAWRTFADTDPDLPEH 243 Query: 250 LLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGET 285 LLPA W AR+ + ++ + P A + E Sbjct: 244 LLPASWPRAEARETFLEVHTALGPYAQERLVELMTP 279 >UniRef50_A3JQN4 Phenylacetic acid degradation operon negative regulatory protein paaX n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JQN4_9RHOB Length = 268 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 26/277 (9%) Query: 3 KLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALF 62 + I + SL+ ++ GD ++ RGG I + L A+ E LG VRTA+ Sbjct: 4 DVKKLIADLHQTGRLRVWSLVMTIMGDVVAPRGGVISMADLLAITEMLGIENGAVRTAMS 63 Query: 63 RLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKST 122 RL+KEGW+ R GR SFY L KGL A +IY E P D W++ + L + Sbjct: 64 RLSKEGWVKGQRQGRVSFYELGPKGLADYAPATQRIYALEPPYADSSWIIAI---LPTAC 120 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 + L+ + A+ + A Q LAD ++ AG+ + LS A + Sbjct: 121 DVAGPRPLLRRSTMAVWLAENAPTEQALADTDAMVFRAGL-------KTLPDWVLSEAGV 173 Query: 183 RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLK 242 ++E ++T + E L+PE A ++LLIH +RR+ L+ Sbjct: 174 GTFIDELNNITNKYTRLEHV----------------SLSPEEALLTRILLIHDWRRLALR 217 Query: 243 DPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFV 279 P LP + P A AR +IY + + A+ Sbjct: 218 HPNLPVDFEPYFVAAGAARAKIGSIYGSLIKPSEAYW 254 >UniRef50_D1VIM9 Transcriptional regulator, PaaX family n=1 Tax=Frankia sp. EuI1c RepID=D1VIM9_9ACTO Length = 335 Score = 177 bits (448), Expect = 5e-43, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 107/279 (38%), Gaps = 10/279 (3%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 L+++L GD R + +L ALL G R AL RL + G L+ S++G Sbjct: 44 PQPQRLLTTLLGDYWYGRREHLPSAALVALLGDFGVTTVGARAALSRLARRGVLESSKVG 103 Query: 77 RRSFYSLSDKGLRLTRRAESKI--YRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIW 132 R ++Y L+ + ++ + WDG+W + + + V+ +L W Sbjct: 104 RHTYYGLTAAASEVVLENVHRLRSFGERHEPWDGRWTVAAFSLPEDLRDVRHTVRSRLRW 163 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 GF L + SP + + E GV + + A W L Sbjct: 164 LGFAPLYDGMWVSPRPVAEPARRVFAELGVLASTVLTTTVDARRSDPRPPMA----AWDL 219 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 +E YE F+ + PL ++ P A + L++ + R DP LP +LLP Sbjct: 220 SELRGQYEEFVATTSPLRDQVRAGGVAGAP--ALVARTALLNAWWRFPSLDPDLPLDLLP 277 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELP 291 W AR+L Y + P A+ S EL Sbjct: 278 ERWPRRGARELFAETYDALGPLAVERFRAVVGESAPELA 316 >UniRef50_C4RGY6 PaaX family transcriptional regulator n=2 Tax=Micromonospora RepID=C4RGY6_9ACTO Length = 322 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 104/271 (38%), Gaps = 9/271 (3%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 S + +L D I ++ ALL G R A+ RL + G L+ SR GR Sbjct: 28 SPQGVTVTLLADYTLRTRAAIPSAAIVALLAEAGVSTAGARAAISRLARRGVLEGSRQGR 87 Query: 78 RSFYSLSDKGLRLTRRAESKIYRAEQP--AWDGKWLLLLSEGLDK--STLADVKKQLIWQ 133 RS Y LS I + P WDG+W ++ + + ++ QL W Sbjct: 88 RSAYRLSRAAAASLVGGGRWILDSTAPAAPWDGRWTIVAFSLPQERSAQRRALRGQLRWL 147 Query: 134 GFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLT 193 G+ L L SP + L + V F AQ E W + Sbjct: 148 GYAPLYDGLWISPCDLTPKARERLAQLA-PGTVTVFRAQQATLDGTG--HRAPIEAWDIA 204 Query: 194 EQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPA 253 N Y+ F++ + PL+P ++ + A + ++ YRR DP LP +LLPA Sbjct: 205 AINRHYQEFLRRWTPLLPGVESGG--IDGAAAVRARTEVMDTYRRFPTLDPQLPLDLLPA 262 Query: 254 HWAGHTARQLCINIYQRVAPAALAFVSEKGE 284 W AR+L +Y +A A V Sbjct: 263 GWLRQPARELFSAVYDGLAEPAERHVRAVVA 293 >UniRef50_B9NQI2 PaaX domain protein n=2 Tax=Rhodobacteraceae RepID=B9NQI2_9RHOB Length = 266 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 64/277 (23%), Positives = 114/277 (41%), Gaps = 21/277 (7%) Query: 5 DTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRL 64 +T + + S+I SL+GD G I G+L ++E +G +R AL RL Sbjct: 9 ETAVTDLTDPHDQRVWSVIVSLFGDMAQAPGTRISGGTLTRIIEPIGIKPEAIRVALHRL 68 Query: 65 NKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLA 124 K+GW++ R+GR S + L++ G + +IY P W LL++E + L Sbjct: 69 RKDGWIESDRMGRVSRHVLTEFGRAQSAAVTPRIYA-RTPVMAEHWHLLIAEDGNTQVLE 127 Query: 125 DVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRA 184 D+ + G +P+ + + LA+S Sbjct: 128 DIMLSHDYIPIGRNVALGSGTPTDHAGAL-------------------LVLAISPQTAPT 168 Query: 185 RVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDP 244 +++ E A +T + + R + + TP ++ ++ LL+H +RRVVL+ P Sbjct: 169 WLQDRLCPQELRASCQTLLAATRRV-ARSRPDGWTPTPLQSATLRTLLVHRWRRVVLRQP 227 Query: 245 LLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSE 281 LP P WAG R+ + + + + +S Sbjct: 228 DLPPAFYPPDWAGPACRESVMQLLDTLPRPSADTLSA 264 >UniRef50_C6D2L6 Putative transcriptional regulator, PaaX family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D2L6_PAESJ Length = 276 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 12/245 (4%) Query: 35 GGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRA 94 G + L + E G + VR AL RL KEG+ + + R L +K +R+ A Sbjct: 22 GSGAAVSRLIEVYEARGISHQIVRNALSRLKKEGYAESAERSRYKATPLGEKFIRIIN-A 80 Query: 95 ESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGALAPSLMASPSQKLAD 152 + +Y E WDG+W +++ E + + + +L+ GFG+L S+ SP + Sbjct: 81 KPGLYEKE---WDGQWCMVMFEIPESERRRRDSFRSELLQLGFGSLYKSVYVSPWDYRDE 137 Query: 153 VQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYE---TFIQSFRPL 209 V L + VA + +I + + W L E A+Y ++Q Sbjct: 138 VIRLGRQCEVAGYITVASTRI---VHNGITQEHCFRLWPLKELQALYRDKDRWLQEHLVP 194 Query: 210 VPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQ 269 V E + + F + L L + L+DP+LP+ LLP W G + + Sbjct: 195 VLKGLEHTGDEDGLQLFVLFLELGEIIAELGLRDPMLPDPLLPDDWTGKRQMKQFQGSLR 254 Query: 270 RVAPA 274 ++A A Sbjct: 255 QIAQA 259 >UniRef50_C4RH20 Putative uncharacterized protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RH20_9ACTO Length = 309 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 107/277 (38%), Gaps = 15/277 (5%) Query: 16 PVSGTSLISSLYGDSLSHRG-GEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR 74 L+ + +G+ + G I +L +LEG G R L RL + G L SR Sbjct: 17 RRQPKQLLLAFFGEHVVDDATGPIRASALIHVLEGAGVAAPATRATLDRLVRSGILARSR 76 Query: 75 IGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDG-KWLLLLSEGLD--KSTLADVKKQLI 131 GR + +SL++ G+ + A ++ G W L+ + + ++ L Sbjct: 77 SGRETLFSLTEHGMAVLCEATYRVRGPRPFDPQGSGWTLVTFSIPEGQRMLRHRLRSTLT 136 Query: 132 WQGFGALAPSLMASPSQ-KLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECW 190 W+GF + L +P + LA L + + V+ F A+ + V W Sbjct: 137 WEGFAPIRDGLWLAPGEVDLAGSLEPLRQDLPPNAVVAFHARELAGF---PIGESVRAAW 193 Query: 191 HLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 + + + FI + + A ++ +L+ + ++ DP LP E Sbjct: 194 DIEAIRSAHLAFIDVWSDPAATTMAPS-------ALTVRTMLVADWLALLRADPRLPAEF 246 Query: 251 LPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSV 287 + A W + + I++++A A+ A +E Sbjct: 247 MDAQWPATQSAETYRRIHKKLAEASTAEFAELVAARP 283 >UniRef50_Q72HH2 PhaN n=3 Tax=Thermus RepID=Q72HH2_THET2 Length = 260 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 114/263 (43%), Gaps = 20/263 (7%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + S I +L+ + + + L A++ LGF E VR AL R K GW+ R G Sbjct: 1 MRARSTIFTLFVEYVYPE-RAARVRDLVAMMAALGFSEMAVRAALSRSAKRGWVVPKREG 59 Query: 77 RRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGL-DKSTLADVKKQLIWQGF 135 R ++Y+LSD+ R+ ++Y + P WDG++LL+L EG D+ ++++ G+ Sbjct: 60 RAAYYALSDRVYWQVRQVRRRLYGS-LPPWDGRFLLVLPEGPKDRGERERFRREMALLGY 118 Query: 136 GALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQ 195 G L + L + LL G++ CF+ ++ + V + L E Sbjct: 119 GGLQSGVYLGVGADLEATRELLGFYGLS--ATCFQGELLGG------KEEVLRAFPLEEA 170 Query: 196 NAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHW 255 A Y P AF L+H R+++ DP LP+ELL + Sbjct: 171 KAGYGRLSALL---------GQSPEDPVEAFRHLTRLVHEARKLLFLDPGLPQELLGPDF 221 Query: 256 AGHTARQLCINIYQRVAPAALAF 278 G R+L ++ + + A F Sbjct: 222 PGPKVRRLFLSAREELRARAAPF 244 >UniRef50_Q1GJJ7 PaaX-like protein n=9 Tax=Rhodobacterales RepID=Q1GJJ7_SILST Length = 301 Score = 160 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 61/279 (21%), Positives = 106/279 (37%), Gaps = 21/279 (7%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 T I + S+I S GD +G + +L ++ LG +R AL R Sbjct: 25 FTTAITALTEPDGLRVWSIIVSFLGDMAQDKGAGVSSAALTRVITPLGIKPEAIRVALHR 84 Query: 64 LNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDK-ST 122 L K+GW + R GR SF+ L+ G + + +IY W LL++ D T Sbjct: 85 LRKDGWTESQRRGRGSFHFLTPFGRQQSALVTPRIYA-RSTCETDAWTLLVAGTPDGLET 143 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 L + Q P ++ A + A+ A + +A L Sbjct: 144 LDALCDQ---------TPLTSIRVNRHAAITPGPAMQHA-AETSHMLVANLDVAHVPGWL 193 Query: 183 RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLK 242 + + Q+ PL + +L+P + ++ LL+H +RR+ L+ Sbjct: 194 QDDLF----PEPLRQSCAALDQALAPL-----GSPPDLSPLQRACLRTLLVHRWRRITLR 244 Query: 243 DPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSE 281 P +P PA W+G + R + ++ LA + + Sbjct: 245 HPDVPRIFHPADWSGESCRTRVFALLDKLPQPELAEIED 283 >UniRef50_B1N6G0 Putative phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=uncultured bacterium CBNPD1 BAC clone 67 RepID=B1N6G0_9BACT Length = 256 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 74/270 (27%), Positives = 107/270 (39%), Gaps = 20/270 (7%) Query: 2 SKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTAL 61 + L I VP SLI S++G + G + L L L L VRTAL Sbjct: 5 AALSALIAAHHGRVPPRTGSLIVSVFGALVLPAGEALRLSDLQEWLAALEIEPGLVRTAL 64 Query: 62 FRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS 121 RL +G L R G+ + Y LS + L+ A I+ P G LL+ E D Sbjct: 65 SRLVNDGTLLRERDGKAALYRLSARALKDFEAAGDLIFGRLLPRPTGDLDLLVIE--DTG 122 Query: 122 TLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAA 181 A ++ +L+ GF LA +L+ + + ++ + A Sbjct: 123 RRATLRAELVAMGFVPLAANLLIRSAWAGRAAPEVRGCLALS------------LHANAD 170 Query: 182 LRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVL 241 L R E W L + Y I + TP A +L+L+H +RR+VL Sbjct: 171 LALRARELWPLEQLAGGYRAVIAHAEAV------QGGAFTPSEARLARLMLVHEFRRIVL 224 Query: 242 KDPLLPEELLPAHWAGHTARQLCINIYQRV 271 +DP LPE +LP W G AR + V Sbjct: 225 RDPFLPEAVLPRDWPGSPARLAFDAALRHV 254 >UniRef50_Q0RIQ5 Putative repressor n=1 Tax=Frankia alni ACN14a RepID=Q0RIQ5_FRAAA Length = 270 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 71/272 (26%), Positives = 105/272 (38%), Gaps = 11/272 (4%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 +S S + L G +L R L LL G+ R L RL +G L+ R G Sbjct: 1 MSAQSWVPLLIGTALPARPFA-SGAGLVDLLATAGYAAGATRVGLSRLCADGSLERRRDG 59 Query: 77 RRSFYSLSDKGLRLTRRAESKIYR-AEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQ 133 R++ Y L + ++ WDG W ++L+ D +ST +K L + Sbjct: 60 RQTSYRLGRQMAETVTSVGGRVESFGRSVGWDGSWTIVLASVPDELRSTRRRMKSALAYL 119 Query: 134 GFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLT 193 GFG L + + +V+ L+ +A V F + + A + A + CW L Sbjct: 120 GFGRLRETTWVAARACEDEVKDLVESLDLAGLVDVFVGR---PSALADVDAILHRCWDLG 176 Query: 194 EQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPA 253 Y F+ F PL + A LT A + L H YR +V +DP LP E LPA Sbjct: 177 SLTQRYSAFVARFAPLCTAVSRDA--LTGPDALLWWMRLTHDYRELVYRDPELPPEFLPA 234 Query: 254 HWAGHTAR--QLCINIYQRVAPAALAFVSEKG 283 R + + A A V Sbjct: 235 DARALRERVVDTYATAHGGLDGRASAQVRHAL 266 >UniRef50_A6GMQ6 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GMQ6_9BURK Length = 263 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 100/280 (35%), Gaps = 26/280 (9%) Query: 15 VPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR 74 + SLI L L+ +G + A R AL RL+ EG ++ + Sbjct: 2 RKPTAKSLILDLL---LASKGRPLSAKQAIAACGIFDISVNNTRVALVRLSAEGLIESAG 58 Query: 75 IGRRSFYSLSDKGLRLTRR-AESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVK---KQL 130 + Y L+D L A + WDG ++++ +E L +S + + L Sbjct: 59 R---ALYQLTDDAHTLADDVAAWRTRSTRVRPWDGSYIVVQAEKLSRSEAKQQRARARAL 115 Query: 131 IWQGFGALAPSLMASPSQKLA---DVQTLLHEAGVADNVICFEAQIPLALSRAALRARVE 187 + GF L L P+ V+ L++ G+ + FEA+ L+ R+ Sbjct: 116 LMLGFQPLNEHLFIRPNNIEDTLQSVRDRLYKLGLEKDAPVFEARDFDL----DLQRRIA 171 Query: 188 ECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLP 247 W+ E Y + R + + L PE A LL + V+ DP Sbjct: 172 TLWNPRELETNYAQLEKKMRTWLDR----SGSLEPEVAARESFLLGGTAIKHVVYDP--- 224 Query: 248 EELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSV 287 LPA W AR+ + V A + S + Sbjct: 225 --FLPAEWVNVQARERFLGAVDEVDQAGMRIWSSLWASME 262 >UniRef50_C1RIT6 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RIT6_9CELL Length = 280 Score = 154 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 97/278 (34%), Gaps = 14/278 (5%) Query: 11 AVNAVPVSGTSLISSLYGDSLSHRGG-EIWLGSLAALLEGLGFGERFVRTALFRLNKEGW 69 A V L+ + G+ + G + L +L LG GE R AL R+ Sbjct: 12 APGEVRRRPEQLLLAFMGELMVGEGAAPLPAAILIGVLGELGAGEAATRAALTRMAGRRL 71 Query: 70 LDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDG-KWLLLLSEGLD--KSTLADV 126 L R GR Y L+ + R+ A +++ + A G W L+ + + V Sbjct: 72 LATVRTGRTVAYGLTPESERVLAEARGRVFDEDPFAPHGEGWTLVSFSVPESRRDVRHRV 131 Query: 127 KKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARV 186 + QL W GFG L L +P + + D++ + +A R+ V Sbjct: 132 RAQLTWAGFGLLRDGLWIAPGEVDVAQALGGLQPDGRDDLELLAFRAHEVPGFSAARS-V 190 Query: 187 EECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLL 246 W L +E F + + A L+ + ++ P L Sbjct: 191 RTAWRLDAMRERHEQFQARWEG---------RDPDVPHALCDVTALVADWLDLLRAVPRL 241 Query: 247 PEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGE 284 P E L W G + ++ +A A A ++ + Sbjct: 242 PPEHLAPDWPGGRSVAAFRRLHAVLAEPARAELARRLA 279 >UniRef50_A9DZC9 PaaX domain protein n=4 Tax=Rhodobacteraceae RepID=A9DZC9_9RHOB Length = 263 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 105/280 (37%), Gaps = 25/280 (8%) Query: 6 TFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLN 65 + SL+ SL+GD G I L+ ++ L R AL RL Sbjct: 8 PLVAAFAGLGGQRVWSLMISLFGDLAQGNGDAIDGPVLSTIMAALDVRPEASRVALHRLR 67 Query: 66 KEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLAD 125 +GWL ++GR S +SL+ +G + A +IY A P W ++++E + + Sbjct: 68 NDGWLQSRKVGRISQHSLTAQGRAESAAASPRIYAA-PPDLSEPWQMVMTEENGR----E 122 Query: 126 VKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRAR 185 + L +GF + P + S+ A +L L Sbjct: 123 IDATLRAEGFIPVMPRVYVGRSESTAPKGSL-------------------PLRGETPPDW 163 Query: 186 VEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPL 245 + T Y+ + + L L + E A ++ L++H +RR+ LK P Sbjct: 164 LRRAVEPTALEPEYDALLHALSTLRGTLACDSHMNALEIA-VLRCLIVHNWRRLALKHPA 222 Query: 246 LPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGET 285 LP L+ + W+G+ L + R AL ++ Sbjct: 223 LPGGLIRSDWSGYQCHLLVDQLLNRHPRPALQDLAAASAA 262 >UniRef50_B7GXE1 PaaX-like family protein n=15 Tax=Acinetobacter RepID=B7GXE1_ACIB3 Length = 266 Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 84/266 (31%), Gaps = 20/266 (7%) Query: 12 VNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLD 71 + ++ LI L+ S ++ + + + E +R A RL EG + Sbjct: 1 MKNTKINARHLIIDLFLSSAYP---QLSIKQILVAAKLFNLSENGIRVATTRLLNEGMIQ 57 Query: 72 VSRIGRRSFYSLSDKGLRLTRRAESKIYR-AEQPAWDGKWLLLLSEGL---DKSTLADVK 127 G Y LS + ++ + W +L + + L D++ L + Sbjct: 58 SVERG---IYQLSPSAKDWAKVILNRKNGIKQTKEWQQHYLAVFTGTLGRIDRTALKKRE 114 Query: 128 KQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVE 187 + L GF L + P + E +A + I + L+ + Sbjct: 115 RALRQFGFKELETGIYIRPDNLAYSFEKTCDELVLAGLEKEAKICIIQHVDSTTLKQ-IF 173 Query: 188 ECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLP 247 W + YE + + E A LLL +++ DPLLP Sbjct: 174 SLWDTKQLEKNYE----MYSRDITHWLENYAHSPLNDAAVKALLLGRETIALLMNDPLLP 229 Query: 248 EELLPAHWAGHTARQLCINIYQRVAP 273 + +AR Q++ Sbjct: 230 APFV-----NESARNQFAQDVQQLDA 250 >UniRef50_D0SVR1 Predicted protein n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SVR1_ACILW Length = 262 Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 92/275 (33%), Gaps = 26/275 (9%) Query: 16 PVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRI 75 ++ LI L + + + + + E LG + +R A+ RLN+E + Sbjct: 4 KLNARHLILDLL---YASKNSTLSIKRILTAAELLGISDNGIRVAVARLNQENVIQAVER 60 Query: 76 GRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADV---KKQLIW 132 G + L K W+GK++L+ + L + + +K L + Sbjct: 61 G--VYQLLEKKFDTSFISLNKHPDMQTATTWNGKYVLVYTGTLGRVDRTALSKREKALRY 118 Query: 133 QGFGALAPSLMASPSQK---LADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEEC 189 GF L ++ P L+ ++T + + G+ + F+ + + V + Sbjct: 119 YGFQELEQNVFIRPDNLTLNLSPLKTAVIQFGLDPDARFFQISQLESETE------VRDL 172 Query: 190 WHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 W + + Y + + E LT A L + DP Sbjct: 173 WDIEALHQTYHAV----QHDINDWFENYQNLTLADAAKSAFYLGKSALFSLRADP----- 223 Query: 250 LLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGE 284 LLPA W ARQ +++ + Sbjct: 224 LLPAEWIDTDARQQFELAVRKIEKQGQLLWQHYFK 258 >UniRef50_A8LTJ1 Transcriptional regulator PaaX n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LTJ1_DINSH Length = 264 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 106/280 (37%), Gaps = 27/280 (9%) Query: 3 KLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALF 62 +QH S + S++GD I L + +G +R AL Sbjct: 5 PFPAIVQHLTGDRTPRVWSFLISVFGDLAQAPDARISAALLRQISAQIGIRPEAMRVALH 64 Query: 63 RLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKST 122 RL K+GW+D +R GR S Y L+D+G + A +IY P + WL + G + Sbjct: 65 RLRKDGWIDSARAGRTSAYFLTDRGRAQSAAASPRIYG-TGPGAETAWLAAFNPGQPGAH 123 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 + + S + ++ + +A V AL Sbjct: 124 QDE--------------AGVWLSATLLVSATRPATADAFVTP-----------LGPGTAL 158 Query: 183 RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLK 242 + M F ++ L PLL +A LT +++LL+H +RR+VL+ Sbjct: 159 PDWMTARICDATTVQMAADFARALAGLRPLLD-SAPGLTTLETTALRVLLVHGWRRIVLR 217 Query: 243 DPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEK 282 P+LP+ L PA W G R ++ R LA + Sbjct: 218 TPILPDHLFPATWQGPVCRDGVADLLARYPKRPLAELEAA 257 >UniRef50_A6GRV6 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GRV6_9BURK Length = 269 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 96/271 (35%), Gaps = 26/271 (9%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 S LI G L+ +G ++ + G E R A+ RL EG L + G Sbjct: 6 SPKQLI---LGLMLAGKGRQVKAAHIVLACSLFGVSENSARVAMARLVAEGQLKSAGRG- 61 Query: 78 RSFYSLSDKGLRLTRRAESKIYRAEQP-AWDGKWLLLLSEGLDKSTLADV---KKQLIWQ 133 Y+L + + + R AWDG + + + L +S + +K L Sbjct: 62 --IYTLGKQAAFTGQDIQRWSNRLTATCAWDGSFYAVFTAHLGRSNRKQLLLREKALALL 119 Query: 134 GFGALAPSLMASPSQK---LADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECW 190 GF L P+ L +Q L GV NV+ FE + S A +++++ W Sbjct: 120 GFREFEQGLFLRPANLKLGLTGIQEKLTAQGVEKNVLTFE----MKPSSLAQTSQIQKLW 175 Query: 191 HLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 + + +Y + + + E A+ + I+ RR DP L Sbjct: 176 EIRKLERLYLSHTKKLNDWMQGYSRMKLEKAARDAYLVGSQAIYEVRR----DP-----L 226 Query: 251 LPAHWAGHTARQLCINIYQRVAPAALAFVSE 281 LPA W ARQ R E Sbjct: 227 LPAEWINAAARQQFFESVLRFDETGTRVWRE 257 >UniRef50_B8FMU0 Putative transcriptional regulator, PaaX family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMU0_DESAA Length = 274 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 83/242 (34%), Gaps = 19/242 (7%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 ++ LI S+ + + + A+ GF +R RL ++G L+ G Sbjct: 5 ITPKILIVSILH---VSDNKAMPIKDMIAIGRLFGFTGNVIRVTTARLVRDGRLENDERG 61 Query: 77 RRSFYSLSD--KGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQG 134 Y + D + A + WDG W+ L+ K L G Sbjct: 62 ---LYRIKDMDTPISRFVNAWKQG-EDRVKNWDGSWICCLAPNGTAGRRKKNAKALELPG 117 Query: 135 FGALAPSLMASPSQK---LADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWH 191 F P L P+ L ++ LL G+ F + + A + W Sbjct: 118 FREGLPGLWVRPANLTMDLPSLKELLVHQGMDPAGELFVGRDFSEKTAAQWQKF---LWP 174 Query: 192 LTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELL 251 + E E ++ ++ + + + +H +++KDPLLPEE++ Sbjct: 175 VEELVRDMEKALERIEKSKARVQGLPPDSALMETYLVGTETVH----MLVKDPLLPEEIM 230 Query: 252 PA 253 P Sbjct: 231 PP 232 >UniRef50_B6AVQ6 PaaX domain protein, C-terminal domain, putative n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6AVQ6_9RHOB Length = 278 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 83/246 (33%), Gaps = 21/246 (8%) Query: 11 AVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWL 70 S LI SL R + L L A E LG +R RL KE L Sbjct: 14 LKRERRPSAKRLILSLL---SQPRMATLSLRQLVAWGELLGQKPAAIRVTAGRLVKEELL 70 Query: 71 DVSRIGRRSFYSLSDKGLRLTRRAESKIYR-AEQPAWDGKWLLLLSEGLDKSTLADVK-- 127 R G Y++ GL L +A + W G W+ + + L K+ +V+ Sbjct: 71 KTVRRG---VYTIGPNGLVLRDKASEWMTTLDRIRGWKGGWICVHTAHLGKANRRNVRKR 127 Query: 128 -KQLIWQGFGALAPSLMASPSQKLADVQTL---LHEAGVADNVICFEAQIPLALSRAALR 183 + GF L + P + + L + G+ + I + + Sbjct: 128 ERAFRLFGFKELVDGVWIRPDNLVCTPPQMYVDLCKLGLETDAILLRSDVIE--HGQPHS 185 Query: 184 ARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKD 243 A V W NA YE ++ + L++ F L+ R + D Sbjct: 186 ALV--LWGSDTLNANYEKGVELLQHSEQKLRQQDLHTITRETF----LIGEHVIRQINAD 239 Query: 244 PLLPEE 249 PLLP + Sbjct: 240 PLLPTD 245 >UniRef50_C0ZNL2 Putative uncharacterized protein n=2 Tax=Rhodococcus erythropolis RepID=C0ZNL2_RHOE4 Length = 287 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 91/256 (35%), Gaps = 12/256 (4%) Query: 26 LYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSD 85 + + L G + +L A + LG ++ VR + RL EG GR++ + Sbjct: 9 ILIEGLLRTDGTVDGRTLYATADALGKTDQQVRLCIKRLVTEGKFTQEGRGRQATLRATP 68 Query: 86 KGLRLTRRAESKIY------RAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGA 137 K LR + R WDG W L + + ++ ++++ G Sbjct: 69 KALREMEPDVEFVRLAYQQDRDTVTPWDGYWHLAGFAIPESSRKARDALRTRVVYLGGAL 128 Query: 138 LAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNA 197 + L SP ++ E V ++ + + W L + Sbjct: 129 VQGGLYVSPHAWEPYIRDAAAELDVEQHLSSLTTRDLKVGMLEDPVKIAAQLWPLDQIAD 188 Query: 198 MYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAG 257 YE + + L+ + A + + L + R + DPLLP ELLP +W G Sbjct: 189 GYERLLDVATARLHKLQNSPGT----DAVTMTIELAAEFTRAMEPDPLLPPELLPTNWIG 244 Query: 258 HTARQLCINIYQRVAP 273 AR + + +A Sbjct: 245 TRARSITAQCWTLLAQ 260 >UniRef50_A3VFU0 PaaX domain protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VFU0_9RHOB Length = 261 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 98/280 (35%), Gaps = 26/280 (9%) Query: 8 IQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKE 67 I + P+ S++ ++ GD I L L+EG+G + +R AL RL ++ Sbjct: 7 IDRLLALGPLKVWSVVVTIMGDLCRAPEDRIEGPLLTRLVEGMGINNQALRVALHRLKRD 66 Query: 68 GWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVK 127 GW++ R GR S Y+L+ +G T IY A PA L+L + Sbjct: 67 GWIEAERDGRVSSYALTPEGRARTEAVRPVIYAAAPPAPVPVSLVLP------------E 114 Query: 128 KQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVE 187 + Q F P P + A L A V AAL + Sbjct: 115 PTMATQDFIDALPDDTVFPGTRSALTTGPLDPALSDALVTTL--------DTAALPDWIA 166 Query: 188 ECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLP 247 E A Y Q+ L P ++L+ H +RR+ L+ LP Sbjct: 167 SVVISPEALADYTRLAQTLESLGPAPG------DLLTRTILRLIAFHHWRRMRLRHGTLP 220 Query: 248 EELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSV 287 + +L W G AR + AL + T Sbjct: 221 DLILGPDWPGAQARTAIARTLETYPRPALDALRAASTTPA 260 >UniRef50_B4RT35 PaaX-like protein n=4 Tax=Alteromonadales RepID=B4RT35_ALTMD Length = 266 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 95/301 (31%), Gaps = 46/301 (15%) Query: 8 IQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKE 67 +Q A+ PV L+ L G S ++ S + G E +R L RL Sbjct: 1 MQQAIVKKPV-ARKLLLKLLG---SRENIQMNAASAVRVGALFGISENNIRVTLTRLQSM 56 Query: 68 GWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQ-PAWDGKWLLLLSEGLDKSTLADV 126 + + G +Y+L + G + + + +W W++ + L KS Sbjct: 57 QLITLVERG---YYALGENGKQFAKEISQWRNAEDSLMSWGNDWVVAQTNTLPKSDKKQQ 113 Query: 127 K---KQLIWQGFGALAPSLMASPSQKLA---DVQTLLHEAGVADNVICFEAQIPLALSRA 180 + + L G L + P+ L V+ L G++ V+ F A Sbjct: 114 RTNERALKLVGMRKLVSDMYIRPNNILDGAKGVRGKLQTLGLSKKVMVFSATDFEDK--- 170 Query: 181 ALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVV 240 + + E W + +Y + + L E A ++ + Sbjct: 171 -MHNKAMELWRQDDLEGLYRNGCEEIE----QSLKHLHSLPLEEATKESYVVGDSALYRL 225 Query: 241 LKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQR 300 + DPLLP L+ R+ ++ + G+ + R Sbjct: 226 VFDPLLPSPLV-----DVALRKRYRDLVKHYD-------------------DVGAEIWHR 261 Query: 301 F 301 F Sbjct: 262 F 262 >UniRef50_B1MJ58 Putative repressor in the phenylacetic acid catabolism n=3 Tax=Actinomycetales RepID=B1MJ58_MYCA9 Length = 286 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 12/217 (5%) Query: 10 HAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGW 69 V +S S++ +S+ I G L + LG ++ VR + RL EG Sbjct: 4 QHVLNADISTRSVV-----ESMIREDATIATGELYDVANILGMSDQQVRLCIKRLVAEGR 58 Query: 70 LDVSRIGRRSFYSLSDKGLRLTRRAESKIY-----RAEQPAWDGKWLLLLSEGLD--KST 122 GR++ + + WDG W L + ++ Sbjct: 59 FTQEGRGRKAILHATGATRNTLEPDLDFVRYMYQQDRGLAPWDGGWHLTAFAVPESARTA 118 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 ++++++ G + L + + V GVA++V F Sbjct: 119 RDAMREEIVRLGGAPIQGGLYVCANAWESRVGAAAERLGVAEHVTMFTTTDLAIGGETGA 178 Query: 183 RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADE 219 R E W + + + L+P+L+ A+ Sbjct: 179 RELAERLWPIDAIAERHRRLLAVAEGLLPVLRTASPT 215 >UniRef50_B7X5K7 Putative transcriptional regulator, PaaX family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X5K7_COMTE Length = 288 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 89/247 (36%), Gaps = 20/247 (8%) Query: 14 AVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVS 73 T LI L R + ++ G GE VR L RL G +D Sbjct: 9 PRRPCATDLILDLL----VARAIPLSARAITQAAALFGIGENAVRVCLSRLISAGKVDRP 64 Query: 74 RIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLL---SEGLDKSTLADVKKQL 130 G L L + + +P W G+WL L + DKS ++ L Sbjct: 65 GRGLYLA-RLQPSHLAHIVDNWHRREQLRRP-WHGQWLALQDASASKADKSLWRRHQRAL 122 Query: 131 IWQGFGALAPSLMASPSQKL---ADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVE 187 +GF +L P L P + Q L G+A + L A Sbjct: 123 GLRGFASLGPQLHIRPDNLRITFTEFQVELESLGIASGSCLMQIHQIDKLHEAQ----AR 178 Query: 188 ECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLP 247 + W+ A ++ +I ++ + D++ A LLL +L+DPLLP Sbjct: 179 KLWNTQALEAAHKHWI----SVILSSHQRLDDMPLPSAVRESLLLGRSAIAHLLRDPLLP 234 Query: 248 EELLPAH 254 EEL+P+H Sbjct: 235 EELMPSH 241 >UniRef50_A3N453 Conserved domain protein n=24 Tax=Burkholderiales RepID=A3N453_BURP6 Length = 278 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 92/287 (32%), Gaps = 26/287 (9%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + LI L ++ G + + G E VR AL RL E ++ + G Sbjct: 4 PTARHLILDLL---VAKDGEPLQVREAIIACRLFGLTENSVRVALARLAAESLVEGAERG 60 Query: 77 RRSFYSLSDKGLRLTRRA-ESKIYRAEQPAWDGKWLLLLSEGL---DKSTLADVKKQLIW 132 Y L + L+ + + W G +L++ L D++ LA ++ L Sbjct: 61 ---SYRLGPSAVELSEELTAWRTVESRLRRWSGAYLMVSCISLGRVDRTALARRERALEM 117 Query: 133 QGFGALAPSLMASPSQKL---ADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEEC 189 GF SL P V+ L + GV F A A AR+ Sbjct: 118 LGFREWDKSLYVRPDNIAGNVDSVRRRLTKLGVEPAAAVFVAMGFD----APQEARIRAL 173 Query: 190 WHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 W + Y T + A EL + A LL R V+ DPLLPE Sbjct: 174 WDGDALSDTYRTLGAQLEDWLAR----APELDLDVAAREAFLLGGKAIRQVVFDPLLPEP 229 Query: 250 LLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSL 296 + AR I +R A ++ P Sbjct: 230 FV-----DVAARAAFIECARRYVGAGHRIWRALLDSEHPSAPGAARD 271 >UniRef50_A0PWR1 Putative uncharacterized protein n=2 Tax=Mycobacterium RepID=A0PWR1_MYCUA Length = 268 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 98/289 (33%), Gaps = 26/289 (8%) Query: 1 MSKLDT-FIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRT 59 MS ++ + P+S S+++S L + + L A+ G + RT Sbjct: 1 MSPTSAARVRRLIGNRPLSARSVLAS---ALLGADQARLTVAELVAVASLFGISDGAART 57 Query: 60 ALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAES--KIYRAEQPAWDGKWLLLLSEG 117 L+R+ G L Y+L+ L +R + +I +WD W L + Sbjct: 58 CLWRMVSSGELTS----GEGSYALAGHLLERRQRVDEASRIADTAVGSWDRTWELAVVSL 113 Query: 118 LDKST--LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPL 175 +S +++K + L + P ++ +V+ + Sbjct: 114 DRRSAADRLELRKAAMALHLAELREGVWIRPDNLDP------QRLPISRSVLDRQCIHFH 167 Query: 176 ALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHF 235 + + + L E A IQ+ + F + + ++ Sbjct: 168 GATTDISADKASSLFSLDEWAANALALIQAMDAELDRSSRDVSAQRSSYQFALSIAVV-- 225 Query: 236 YRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGE 284 R + +DPLLP EL+ W GH R + Y R+ A +S Sbjct: 226 --RHLQRDPLLPAELIGDDWPGHPLR----STYLRLDEAFKRRMSHAFR 268 >UniRef50_Q28UN6 PaaX-like protein n=1 Tax=Jannaschia sp. CCS1 RepID=Q28UN6_JANSC Length = 265 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 94/270 (34%), Gaps = 27/270 (10%) Query: 3 KLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALF 62 + ++ P+ S++ + GD E+ +L++ +E +G + +R AL Sbjct: 7 PIRPLVEALNAEAPLKLWSVLVTCLGDVSRDGVIEVSGVALSSFVERMGLQPQAMRVALH 66 Query: 63 RLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKST 122 RL ++GW++ R+GR F+ LSD L TR +IY W L Sbjct: 67 RLKRDGWVESRRLGRVGFHRLSDSALTQTRAVAGRIYGPGAGPA--PWHLAGMPPDAP-- 122 Query: 123 LADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAAL 182 L P A + E + A S L Sbjct: 123 -----------------DGLSLLPDTLSATPISRRFALICGPLEDVPEDWLLTAPSGRGL 165 Query: 183 RARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLK 242 V++ A ++ ++ + + T F +++L++H +RR++L+ Sbjct: 166 PVWVQDVVVEAGCEAEFKALERTLAQIDKVPD------TRLERFTLRVLVLHAWRRLILR 219 Query: 243 DPLLPEELLPAHWAGHTARQLCINIYQRVA 272 E L A + R + ++ Sbjct: 220 SSPAAEAALGGARAEISCRARVHQLLDQLG 249 >UniRef50_A1UBK1 PaaX domain protein, C-terminal domain n=11 Tax=Actinomycetales RepID=A1UBK1_MYCSK Length = 243 Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 86/270 (31%), Gaps = 35/270 (12%) Query: 15 VPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR 74 + ++ S++ S+ L L L E VR AL R+ G L S Sbjct: 1 MRLTARSVVLSVL---LGAHPAWATASELIRLTADFDIREPTVRVALTRMVGAGDLVRSA 57 Query: 75 IGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSE--GLDKSTLADVKKQLIW 132 G Y LSD+ L RR + I WDG W L+ G D T A ++ L Sbjct: 58 DG----YRLSDRLLARQRRQDDAI-NPRPRRWDGTWTTLVITSVGTDARTRAALRNTLQD 112 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 FG L + P + VAD V A+ W L Sbjct: 113 NRFGELREGVWLRPDNLDTALPE-----DVADRVRVLHARDDE------PADLAARLWDL 161 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 A + ++ R + + R +L DP+LP +LLP Sbjct: 162 PAWAAQGRRLLD--------------DMDTARDIPARFVTAAAIVRHLLTDPVLPADLLP 207 Query: 253 AHWAGHTARQLCINIYQRVAPAALAFVSEK 282 A W G R + A + + Sbjct: 208 ADWPGDELRTAYTAFAAELVERRDAQLRDA 237 >UniRef50_A4T1R0 PaaX domain protein, C-terminal domain n=20 Tax=Actinomycetales RepID=A4T1R0_MYCGI Length = 244 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 86/267 (32%), Gaps = 35/267 (13%) Query: 13 NAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDV 72 A ++ S++ S+ L L L G E VR AL R+ G L Sbjct: 4 PANRMTARSVVLSVL---LGAHPAWATAAELIRLTSDFGIRESTVRVALTRMVSAGDLVR 60 Query: 73 SRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSE--GLDKSTLADVKKQL 130 S G Y LS + L RR + + + WDG W L+ G D T A ++ L Sbjct: 61 SEDG----YRLSGRLLARQRRQDDVL-EPRRGEWDGLWTTLVITSVGADARTRAHLRNTL 115 Query: 131 IWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECW 190 F L + P+ + A + + +A+ W Sbjct: 116 QNHRFAELRDGVWMRPANVEVQL-----GANITEKARILQARD------ERPAELATHLW 164 Query: 191 HLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 LT ++ E+ + + R +L DP+LP+EL Sbjct: 165 DLTGWAVDGRRLLK--------------EMDDAHDVPTRFVAAATIVRHLLTDPVLPDEL 210 Query: 251 LPAHWAGHTARQLCINIYQRVAPAALA 277 LPA W G R + + Sbjct: 211 LPADWPGADLRAAYNDFAAEMVARRDD 237 >UniRef50_B5JMA2 PaaX-like protein C-terminal domain n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMA2_9BACT Length = 263 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 85/246 (34%), Gaps = 26/246 (10%) Query: 19 GTSL-ISSLYGDSLSHRGGEIWLGSLAALLE-GLGFGERFVRTALFRLNKEGWLDVSRIG 76 SL + + D G E+ +A + + G R L RL K G + V Sbjct: 4 PKSLDLMMILADLSL-EGLELASAQIARICQNTFGGSNRSYMNLLRRLEKSGLITVEPED 62 Query: 77 RRSFYS----LSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKS--TLADVKKQL 130 + L++ G+ + + A + WDGKW LL + + ++K L Sbjct: 63 SDAKTRWVPKLTNAGITSNSQPSPR--TAWEVEWDGKWSLLTFDLPTHAGKARKQLRKWL 120 Query: 131 IWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECW 190 FG L S+ S +KL++++ L E + + VE+ W Sbjct: 121 TSLRFGKLQGSVWVS-HRKLSEIENSLEEIELDPESVVCIEGSFWNAPNQDH--YVEKAW 177 Query: 191 HLT---EQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLP 247 L A Y F++ E E + + + V DPLLP Sbjct: 178 QLDRMQALYAEYLRFVER---------ETGTETSLLDYQKWRTCEKQLWSAAVELDPLLP 228 Query: 248 EELLPA 253 EL P Sbjct: 229 RELWPQ 234 >UniRef50_D0L5H2 PaaX domain protein protein domain protein n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L5H2_GORB4 Length = 244 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 83/265 (31%), Gaps = 37/265 (13%) Query: 15 VPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSR 74 PVS S + SL + + + + + G E R AL R+ G L Sbjct: 7 PPVSARSAVLSLLLGAQPP---TLNVREIVGAMGLFGISESATRVALTRMVAGGDLLRHE 63 Query: 75 IGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKST--LADVKKQLIW 132 S Y+LS++ LR + E + W G W + + ++ ++ ++ Sbjct: 64 ----SAYTLSERLLRRQEQVEP----PARRRWSGSWEMAVVTTTGRAAADRVALRTEMTR 115 Query: 133 QGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHL 192 L + P+ + L E + A W+L Sbjct: 116 HRIAELREGVWTRPANLVHHWPDRLRE----------VSTFFEARPDGEPAELAARLWNL 165 Query: 193 TEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLP 252 + ++ + + F + +H + DPLLP ELLP Sbjct: 166 DAWATRGQAYLDALAAVH----------DEPTRFVTMVAAVHH----LQTDPLLPTELLP 211 Query: 253 AHWAGHTARQLCINIYQRVAPAALA 277 AHW G + + +A Sbjct: 212 AHWPGERLATIYADYRAWLAAMRED 236 >UniRef50_C2AK69 Phenylacetic acid-responsive transcriptional repressor n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AK69_TSUPA Length = 277 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 86/255 (33%), Gaps = 12/255 (4%) Query: 27 YGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDK 86 +++ I G L + LG ++ VR A+ RL EG S GR + S +D Sbjct: 11 LIEAMLRADATIDAGELFDVAALLGMSDQQVRLAIKRLVTEGRFTQSGRGRSAVLSATDS 70 Query: 87 GLRLTRRAESKIY-----RAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGALA 139 + + WDG W L + + ++ ++ G + Sbjct: 71 TRATIEPDRDHVRLMYAQDRGRAPWDGVWHLAGFGVPESAREARTGLRDAILALGGAPVQ 130 Query: 140 PSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMY 199 L AS ++ + E G + A W L E + Sbjct: 131 GGLYASAHPWEGAIRAVAEELGAGLYLTTLSTTDLDVGDARGPAA-AARLWPLNELTDGH 189 Query: 200 ETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHT 259 R ++ + A + + L+ + R DPLLP ELLP WAG Sbjct: 190 RRLAAQARDVLARVGGA----DHADRLAMTVTLVTEFARAHEADPLLPPELLPPDWAGTR 245 Query: 260 ARQLCINIYQRVAPA 274 AR L ++ +A A Sbjct: 246 ARALADQAWRALAAA 260 >UniRef50_A4A7F5 PaaX-like protein n=2 Tax=unclassified Gammaproteobacteria RepID=A4A7F5_9GAMM Length = 272 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 92/272 (33%), Gaps = 20/272 (7%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + L+ SL S EI +R AL RL K G+L G Sbjct: 10 PTPKRLVLSLL---SSPELKEIGARECVKWGRLFDIDPTAMRVALGRLVKAGFLRSVVRG 66 Query: 77 RRSFYSLSDKGLRLTRRAESKI-YRAEQPAWDGKWLLLLSEGLDKSTLADVK---KQLIW 132 R Y++ D+G L+ A + AWDG+WL++ + L + + +K + L Sbjct: 67 R---YAIGDRGRVLSETARRWVSAEERVGAWDGRWLMVHTAHLGRRDQSALKLRDRALQL 123 Query: 133 QGFGALAPSLMASPSQKL---ADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEEC 189 GF L L P+ A+ + L E G+ + I A L +R + Sbjct: 124 VGFAELRSGLWCRPANYRESSAETRARLRELGLGEEAIILRADSLLLETRE-----LAAL 178 Query: 190 WHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 W Y Q+ + + E LL R + DPLLP+ Sbjct: 179 WPRQALEEAYAVLTQAMIDSMARGDADDTDAGKEALARETFLLGEAVIRQINGDPLLPDA 238 Query: 250 LLPAHWAGHTARQLCINIYQRVAPAALAFVSE 281 ++ A + Y+ A A Sbjct: 239 MV--DVAARRKMHETMVAYEAFGRDAWARFQA 268 >UniRef50_UPI00005103A0 hypothetical protein BlinB_17434 n=1 Tax=Brevibacterium linens BL2 RepID=UPI00005103A0 Length = 294 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 76/256 (29%), Gaps = 9/256 (3%) Query: 34 RGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRR 93 R + + +L+ G+ V L R+ L ++GR + Y L ++ L Sbjct: 35 RAQGLPGPVIVGILDEHGYSSSSVHNQLVRMVHRSILTSEKVGRVTVYRLGERILSGFMD 94 Query: 94 AESKIYRAEQPAWDGKWLLLLSEGLDKST--LADVKKQLIWQGFGALAPSLMASPSQKLA 151 E P +DG + L + S + G+ L P L+ S + Sbjct: 95 IAG---DREAPTFDGCFHSALYSIPETSRMLRDRFQYVARMLGYRQLRPGLLLSFADLSY 151 Query: 152 DVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVP 211 ++ L E + S+ A + L + + L Sbjct: 152 ELSAQLPEVAEPGWCEFATIR---PESQEAAVRMTSRAFDLEAASLQLPRLEDALAALSL 208 Query: 212 LLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRV 271 ++ P+ + + + V+ P+LP L+ R L Sbjct: 209 NDRQPGAG-HPDMSLVKFFDIYFQVAQAVMSHPILPPALVGPDQPALRFRTLMDRCNLEY 267 Query: 272 APAALAFVSEKGETSV 287 + E+ + S Sbjct: 268 YLRFDQQLLERADASS 283 >UniRef50_C0ZMY9 Putative uncharacterized protein n=2 Tax=Rhodococcus erythropolis RepID=C0ZMY9_RHOE4 Length = 271 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 79/242 (32%), Gaps = 18/242 (7%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGR 77 G S + + + E L E +G VR A RL +E L + G Sbjct: 13 RGMSATRVVLDLATASPDTEFSTAVLTRAGEIVGVSASSVRVATGRLCRENKLRRTARG- 71 Query: 78 RSFYSLSDKGLRLTRRAE-SKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKK---QLIWQ 133 Y L+ G+ E + WDG W+ + L +S ++ L Sbjct: 72 --TYVLNPDGIPTYSEVEGWRTRTDRIRPWDGTWIAVEHSALKRSDRTAARRHDQALRLA 129 Query: 134 GFGALAPSLMASPSQKL---ADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECW 190 G+ P+L P+ L + L G A E + + W Sbjct: 130 GYEEWKPTLAVRPNNLLGGTDSARRTLRRLGTAPESAVMEIAHLAPEDDST----IRTLW 185 Query: 191 HLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEEL 250 + I R + + ++ E A L L V++++PLLPEEL Sbjct: 186 NSEALLVD----IAEAREALTQAQTRLATISREEAARESLALGSAVIAVIVRNPLLPEEL 241 Query: 251 LP 252 P Sbjct: 242 EP 243 >UniRef50_Q0C353 Putative uncharacterized protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C353_HYPNA Length = 268 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 82/243 (33%), Gaps = 15/243 (6%) Query: 12 VNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLD 71 + ++ +LI SL + + R +GSL +R A RL K+G L+ Sbjct: 1 MTPQDLTAKALILSLISSTDTDRQM---IGSLIHAGALFDIEPATMRVAATRLLKDGLLE 57 Query: 72 VSRIGRRSFYSLSDKGLRLTRRAESKI-YRAEQPAWDGKWLLLLSEGLD---KSTLADVK 127 G Y K LTRR + ++ AW+G WL+ ++ L + L + Sbjct: 58 SPERG---VYVPGRKAQALTRRVQQWQDVASKVVAWNGDWLVAMTHHLGRRDRRQLRTRE 114 Query: 128 KQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVE 187 + L G+ L P+ ++ + L +S + Sbjct: 115 RALALFGYQEAEAGLWVRPANLARAIEAHREDLVGIGADATMPVLRVLEVSAPDIGGWPG 174 Query: 188 ECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLP 247 W Y I + + LT A LL+ R + DPLLP Sbjct: 175 -LWSAQALETSYREAISAMT----ESLKGLPGLTVAEAARETLLIGQAAIRAINFDPLLP 229 Query: 248 EEL 250 +L Sbjct: 230 PQL 232 >UniRef50_B6IPS7 Putative uncharacterized protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IPS7_RHOCS Length = 292 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 85/268 (31%), Gaps = 39/268 (14%) Query: 13 NAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDV 72 A +S +LI L D+ S L G +RTAL RL +EG + Sbjct: 12 EAGAISARTLILDLM-DTGSPPD--FSTRDLVLAGAAFGLEATGIRTALTRLRQEGRVRT 68 Query: 73 SRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVK---KQ 129 GR + + ++ + Q WDG WLL ++ +++ + + Sbjct: 69 LDRGRHAIGAKAEPLQHRILGWREV--QGRQRPWDGGWLLAVAGPQERANRTLWRHTVRA 126 Query: 130 LIWQGFGALAPSLMASPSQ-----------------------KLADVQTLLHEAGVADNV 166 L +GF ++ P ++ L A ++ Sbjct: 127 LDLEGFAEAETNVWVRPDNLEGGLEGGLEGGLEGGLEGGLEGGATAMRRRLLALDAAPSL 186 Query: 167 ICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAF 226 + A A R W + A + ++ L +L A Sbjct: 187 LLVRATALDDEREA----RFRTLWPVAGLAASHAGLVRRLAESAARL----PDLPLVEAA 238 Query: 227 HIQLLLIHFYRRVVLKDPLLPEELLPAH 254 LL R +L+DPLLPE L P Sbjct: 239 AECLLTGRQAIRAILRDPLLPEALCPPD 266 >UniRef50_Q07SC0 PaaX domain protein, C-terminal domain n=2 Tax=Proteobacteria RepID=Q07SC0_RHOP5 Length = 276 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 80/242 (33%), Gaps = 21/242 (8%) Query: 17 VSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 + L+ +L + G + A E G R AL RL G +D + G Sbjct: 7 PAPRHLLMNLL---RAADSGSLSAAEAVAAGELFGISGNATRVALARLAAAGLVDATTRG 63 Query: 77 RRSFYSLSDKGLRLTRRA-ESKIYRAEQPAWDGKWLLLLSEGLDKS---TLADVKKQLIW 132 Y L G+ L + + AW GKW+ +L+ GL ++ + L Sbjct: 64 ---TYRLGQAGIALDTEVSSWRDAESRVVAWSGKWIAVLTAGLPRTDRAAWRARDRALSL 120 Query: 133 QGFGALAPSLMASPSQKL---ADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEEC 189 G L L P V+ L GV D F A + Sbjct: 121 LGLRELDSGLFVRPDNLQGGVTSVRLRLGALGVDDETPVFGADQFDRKREQQ----ARKL 176 Query: 190 WHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEE 249 W + E Y + + + + + +F LL R ++ DPLLP+ Sbjct: 177 WDVDELTRFYRDGSEQLEKWLKRSNRLSQGVAAKESF----LLGDHAIRQLVFDPLLPDP 232 Query: 250 LL 251 L+ Sbjct: 233 LI 234 >UniRef50_B5JH73 PaaX-like protein C-terminal domain n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH73_9BACT Length = 255 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 18/195 (9%) Query: 82 SLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGALA 139 L++ G+ + + WDG W L+ + + ++ + L + FG L Sbjct: 71 RLTEAGINNVTDEIDPVR-RWEADWDGVWRLITFDLPSASRKRRTELNQWLQRRRFGGLQ 129 Query: 140 PSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMY 199 S+ SP A + + FE + R V E W N Y Sbjct: 130 GSVRVSPIFDEAWKAEIEGLKIPPSCMALFEGKPF---GLNEDRDIVREGWDFKAINEAY 186 Query: 200 ETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHF---YRRVVLKDPLLPEELLPAHWA 256 E I R + + ++ L +R DP LP+ LLP ++ Sbjct: 187 EKLISFLR---------SRPMPDSDEARARIWLEEENTLWRVAFELDPFLPKALLPDNYR 237 Query: 257 GHTARQLCINIYQRV 271 G A +L +++++ Sbjct: 238 GKEAFELRASVFRKF 252 >UniRef50_A6WC05 Putative transcriptional regulator, PaaX family n=2 Tax=Actinomycetales RepID=A6WC05_KINRD Length = 263 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 77/253 (30%), Gaps = 23/253 (9%) Query: 29 DSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGL 88 ++ GE+ L + G ++ VR A+ RL G ++ GR L+ G Sbjct: 14 EAFLPLDGEVGLDLVYGTANAAGLADQPVRLAIRRLVAAGDVEQRGRGRAGTLRLTGAGR 73 Query: 89 RLTRRAESKIYRAE-----QPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGALAPS 141 R + A + WDG W LL + ++ +++L G ++ Sbjct: 74 AQLDRDRLALRLARAQDTGRAPWDGSWHLLAVSVEESARAVRDAWRRELSAVGAAPVSTG 133 Query: 142 LMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYET 201 L S A L +++ + A E W Sbjct: 134 LHVSAHDLSA-----LLATADRRHLVLATTDRLEVHGTSDPLALAERLWPAAP------- 181 Query: 202 FIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTAR 261 + + P QL L R V DPLLP EL P W R Sbjct: 182 -VDRAYDALADALARPPAPDP---LVQQLRLADALERAVRDDPLLPPELRPQPWRPARLR 237 Query: 262 QLCINIYQRVAPA 274 + + +A Sbjct: 238 RRWYAAWTALAEQ 250 >UniRef50_B5JQS9 PaaX-like protein C-terminal domain n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQS9_9BACT Length = 248 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 62/187 (33%), Gaps = 18/187 (9%) Query: 82 SLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGL--DKSTLADVKKQLIWQGFGALA 139 L+ G + W G W L + ++ + + L FG L Sbjct: 59 QLTQTGKASLPESIDPT-SFWNQDWSGNWRTLTFDLPADERKERKRLNRWLQENKFGHLQ 117 Query: 140 PSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWH---LTEQN 196 SL ++K D T L + + F PL AL VE+ W + Sbjct: 118 GSLWL-TARKYEDWSTQLGSLNIDPRSVIFIEGKPLGNLTDAL--IVEKAWDFTHIANLQ 174 Query: 197 AMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHF-YRRVVLKDPLLPEELLPAHW 255 Y F+++ P+ + F +R V+ DPLLP L PA++ Sbjct: 175 EEYLRFLENRTPIAAQFSS--------QDFAAWFRDESELWRSVMSSDPLLPSPLHPANY 226 Query: 256 AGHTARQ 262 G Q Sbjct: 227 QGQLCWQ 233 >UniRef50_C7ACF7 Putative regulatory protein (Fragment) n=1 Tax=Rhodococcus opacus RepID=C7ACF7_RHOOP Length = 112 Score = 77.4 bits (189), Expect = 5e-13, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 36/86 (41%) Query: 13 NAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDV 72 + + LI +++G + + S+ L+ LG VR+++ RL + L+ Sbjct: 27 RSSELQPRELIVTIFGLYARAESNWLSVASVVRLMSHLGVDGSAVRSSISRLKRRETLEA 86 Query: 73 SRIGRRSFYSLSDKGLRLTRRAESKI 98 R + YSLS L + +I Sbjct: 87 HRHDGAAGYSLSKPTLDALAEGDVRI 112 >UniRef50_D1A2H2 Putative transcriptional regulator, PaaX family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A2H2_THECD Length = 154 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 28/78 (35%) Query: 223 ERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEK 282 A + L++ DP PEELLP W A ++ +Y P A V + Sbjct: 75 AEALRARTELMYDRLHFPGLDPKPPEELLPDDWPRRRAHEVFGELYDAFGPPAEIRVRQT 134 Query: 283 GETSVGELPAPGSLYFQR 300 S EL + R Sbjct: 135 VARSAPELAPLVRHHTHR 152 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 15/37 (40%) Query: 18 SGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGE 54 L+ +L GD S R + +L ALL G Sbjct: 21 KPRHLLVTLLGDYWSGRPEHLPSAALVALLGEFGISP 57 >UniRef50_B1ZX33 Putative transcriptional regulator, PaaX family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZX33_OPITP Length = 252 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 13/179 (7%) Query: 100 RAEQPAWDGKWLLLLSEGLD--KSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLL 157 +WDG+W + L + + ++ ++++L GFG L S+ SP + Sbjct: 84 AQWDRSWDGRWRVALFDIPEQRRALRVKLRRRLAELGFGYLQNSVWVSPDPCERLQALVR 143 Query: 158 HEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAA 217 +G A++ EA+ + A + V+ W N Y +++ K Sbjct: 144 DLSGEAESFSFIEARPCAGETDADV---VKGAWSFPAINRNYANYLEVL-------KHQP 193 Query: 218 DELTPERAFHIQLLLI-HFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAA 275 + A L + + + V DPLLPE LLP + G A + + + + A Sbjct: 194 RRIDGVAARRSWLQVEWKAWLKAVRSDPLLPEPLLPTPYLGREAWRQRCSALRHLIRAG 252 >UniRef50_Q8TZ05 Predicted transcriptional regulator n=1 Tax=Methanopyrus kandleri RepID=Q8TZ05_METKA Length = 126 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 8/113 (7%) Query: 1 MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSH------RGGEIWLGSLAALLEGLGFG- 53 MS++ Q V + + G +L+ +G I + + +L+ LG+ Sbjct: 1 MSEVPEEFQKDVEEIKRRLREGELTNLGAALAVVLLASLKGQWINVDEIVRVLKELGYNV 60 Query: 54 -ERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPA 105 +R+AL+++ +EG L R+GR++ Y + ++ E Sbjct: 61 KANSIRSALYKVRQEGLLKSKRLGRKTAYFIPVDDDETLGAILRRVTGEEVRE 113 >UniRef50_D1N5H3 Transcriptional regulator, GntR family with LacI sensor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N5H3_9BACT Length = 349 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 84/284 (29%), Gaps = 40/284 (14%) Query: 29 DSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGL 88 G ++ ++++ + V +A+ RL +EG L + GRRS ++D L Sbjct: 15 LVARAPGSTF--RTVRSIMDDFDVSQATVSSAIQRLTEEGLL--RKNGRRSM-EVTDAVL 69 Query: 89 RLTRRAESKIYRAEQPAW-DGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLMASPS 147 R+ +Y P W + ++ ++++ + +L + Sbjct: 70 -RYRKGAKPVYCLAIPRWPSEYYNMVELCFMEQAER--LGYELEIVHY------------ 114 Query: 148 QKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFR 207 Q + E + ++ + L + Y F + Sbjct: 115 ---DWKQRVPRELELPKLDGLVVITGVSDITGDDVSF-------LDALDVPYVIFGRFLP 164 Query: 208 PLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINI 267 L +E T A H L H R++ + G TAR Sbjct: 165 GLALHSVSNDEEYTGAVAAHHLFELGH--RKLAVLHSE-------PEGEGMTARTKGFRQ 215 Query: 268 YQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEAL 311 + + ++ + + +RF E AL Sbjct: 216 FAELHGCSVEVIECGVRAGDDAVRKSYEFMKKRFSEKVPEFSAL 259 >UniRef50_Q72WJ5 ChrB protein n=3 Tax=Desulfovibrionales RepID=Q72WJ5_DESVH Length = 334 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 43/151 (28%), Gaps = 8/151 (5%) Query: 100 RAEQPAWDGKWLLLLSEGLDKS--TLADVKKQLIWQGFGALAPSLMASPS--QKLADVQT 155 RA Q WLL + + A V ++L G + S+ P + Sbjct: 5 RAAQDGMHHPWLLCIHNIPPRPPYLRAKVARRLAALGAMPVKNSVYVLPDTAPHRDALVW 64 Query: 156 LLHEAG-VADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLK 214 L E A A + + + A Y + F+PLV L Sbjct: 65 LAQEIEQGGGKAYVCRATFDGLDGGGLSDADIRRLF-TEAREADYRSLAGEFQPLVEGLT 123 Query: 215 EAADELTPE--RAFHIQLLLIHFYRRVVLKD 243 + +A L Y V+ D Sbjct: 124 APSSADDAAVQQARQWCTQLKARYEAVLALD 154 >UniRef50_B2NB02 PaaX family protein n=3 Tax=root RepID=B2NB02_ECOLX Length = 303 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 60/217 (27%), Gaps = 23/217 (10%) Query: 19 GTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLD--VSRIG 76 +I + D + G + LG GE VRTA+ L +GWL R G Sbjct: 21 AKLMIMARLADYSNDDGVCYPGVE--TICRQLGLGESTVRTAISELEADGWLTRQSRRKG 78 Query: 77 RRSF---YSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQ 133 R+ Y L+ L R + AE L + S + + Sbjct: 79 NRNTSNLYHLNADRLEQLAR-TERDKIAELKHKRRLSSLCDPSDSEPSKSEPSESECS-- 135 Query: 134 GFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLT 193 + PS L + + Q+ + A + Sbjct: 136 -------GVF-DPSDSGKKTVLTLQNLDPDPQGLKHDPQVNSKHDPQDIGASADASAPAR 187 Query: 194 EQNAMYE-TFIQSFRPLVPLLKEAADELTPERAFHIQ 229 Y F Q+++ + A + AF Sbjct: 188 SARQEYSPEFEQAWQ----EYPKRAGGNSKSAAFKAW 220 >UniRef50_C1TMZ1 Transcriptional regulator, gntR family n=5 Tax=Bacteria RepID=C1TMZ1_9BACT Length = 114 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 18/44 (40%) Query: 39 WLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYS 82 G L L + G VR L RL + G L+ S GR Y Sbjct: 24 SSGYLRELADEFGESTNSVRVELNRLAEAGLLESSTEGRTKVYR 67 >UniRef50_B8GFI1 Transcriptional regulator, MarR family n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GFI1_METPE Length = 282 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 5/71 (7%) Query: 25 SLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLS 84 ++ S+ G + + + VR + RL +G + GR + Y L+ Sbjct: 210 TILALIRSNPGITQSM-----IAAQIECSAPTVRWHMHRLLDDGIVTAEHRGRNTLYRLT 264 Query: 85 DKGLRLTRRAE 95 D G + Sbjct: 265 DDGSAAMHQVA 275 >UniRef50_O07127 Uncharacterized 16.5 kDa protein in ptsI 3'region n=3 Tax=Lactobacillus sakei RepID=YPTY_LACSK Length = 146 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 36 GEIWLGSLAALLEG-LGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRA 94 G++ L LL+ + + ++T + RL K+G+L + GRR Y+ + + A Sbjct: 23 GQVNSRDLIDLLQPKRDWQDSTIKTLIGRLVKKGFLKTEKEGRRFNYTATVPEIEAMENA 82 Query: 95 ESKIYR 100 ++ Sbjct: 83 TQSLFE 88 >UniRef50_Q977V6 Putative Rep protein n=1 Tax=Pyrococcus sp. JT1 RepID=Q977V6_9EURY Length = 543 Score = 43.1 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Query: 4 LDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFR 63 L + P+ + L + + + + G +++ + LG R VR + + Sbjct: 442 LQQVLGELAEPEPIDVSKLGNKVLATYILIKHGHRSTAAISRV---LGVTRRQVRNYIRQ 498 Query: 64 LNKEGWLDVSRIGRRSFY 81 L + G ++ + GR FY Sbjct: 499 LREAGLVEAEKRGRHVFY 516 >UniRef50_Q9S7P1 Os01g0255000 protein n=6 Tax=Spermatophyta RepID=Q9S7P1_ORYSJ Length = 322 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 7/141 (4%) Query: 97 KIYRAEQPAWDGKWLLLLSEGLDK--STLADVKKQLIWQGFGALAPSLMASPSQKLADVQ 154 +++ AE DG +LL+ + S ++ L +GF A+AP L + Sbjct: 18 RLHVAEAGPEDGPAVLLVHGFPELWYSWRHQMR-ALAARGFRAVAPDLRGYGDSDAPPGR 76 Query: 155 TLLHEAGVADNVICFEAQIPLALSRAALRAR-VEECWHLTEQNAMYETFIQSFRPLVPLL 213 + +++ A + A W L + +F L Sbjct: 77 DSYTVLHLVGDLVALIADVGQPRVFVAAHDWGAAVAWQLCLLRPD---LVTAFVALSVEY 133 Query: 214 KEAADELTPERAFHIQLLLIH 234 +P + H Sbjct: 134 HPRNPTRSPVQTLRAVCGDGH 154 >UniRef50_B8IZ34 GntR domain protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZ34_DESDA Length = 261 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 27/62 (43%) Query: 45 ALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQP 104 L+E G G VR AL L + G ++VS R L+ L RA +IY + Sbjct: 54 ELMEEFGVGRPAVREALSALARMGLIEVSPGMRARVCRLTLNPLLREMRATMEIYSSTHD 113 Query: 105 AW 106 W Sbjct: 114 GW 115 >UniRef50_B9LN99 Transcriptional regulator, ArsR family n=1 Tax=Halorubrum lacusprofundi ATCC 49239 RepID=B9LN99_HALLT Length = 142 Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%) Query: 49 GLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDG 108 LG + V AL RL G L + GR +Y + + RL + E + D Sbjct: 70 ALGVSQGAVSQALSRLYDAGLLTRRKEGRWRYYDATGRAERLLALLDETRSAGETGSADE 129 Query: 109 K 109 + Sbjct: 130 R 130 >UniRef50_B7R0B2 Sugar-specific transcriptional regulator TrmB family n=1 Tax=Thermococcus sp. AM4 RepID=B7R0B2_9EURY Length = 164 Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 3/71 (4%) Query: 35 GGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRA 94 G + + L E GF V TAL RL ++ ++V + GR +++ Sbjct: 35 GEPMTISELV---EETGFSRSAVSTALSRLQRDYLVEVQKKGRTKYFTAIPALFEKFLEQ 91 Query: 95 ESKIYRAEQPA 105 I E Sbjct: 92 PKIILEKEVMP 102 >UniRef50_Q9L219 Putative ArsR-family transcriptional regulator n=1 Tax=Streptomyces coelicolor RepID=Q9L219_STRCO Length = 113 Score = 40.8 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 4/72 (5%) Query: 26 LYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSD 85 L GGE + LA + G V L RL G ++ R GR +Y L Sbjct: 40 LLMKLAERSGGEAAVHELADV----GVSPATVSHHLKRLRCIGLIESRRDGRLVYYKLGA 95 Query: 86 KGLRLTRRAESK 97 + + Sbjct: 96 GVRAALMQILHQ 107 >UniRef50_A3CX94 Transcriptional regulator, TrmB n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CX94_METMJ Length = 285 Score = 40.8 bits (94), Expect = 0.071, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%) Query: 45 ALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLR 89 + E +G V L RL +G ++ +R GR Y+L+ + L Sbjct: 209 EIAEIVGISRSTVAWHLRRLAADGLVEANRDGRTVCYTLTGEALA 253 >UniRef50_C5BRV6 Transcriptional regulator, GntR family n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BRV6_TERTT Length = 220 Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 4/52 (7%) Query: 25 SLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIG 76 L GD S + L + G VR A+ RL++EG L+ G Sbjct: 25 DLVGDVFSPGQRLVE----VDLAKRYGVSRTPVREAMARLSREGLLESHERG 72 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.133 0.368 Lambda K H 0.267 0.0411 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,843,344,852 Number of Sequences: 3077464 Number of extensions: 74244264 Number of successful extensions: 334644 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 274 Number of HSP's successfully gapped in prelim test: 637 Number of HSP's that attempted gapping in prelim test: 333137 Number of HSP's gapped (non-prelim): 1394 length of query: 316 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 188 effective length of database: 646,480,964 effective search space: 121538421232 effective search space used: 121538421232 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 93 (40.4 bits)