BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (768 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P25907 Uncharacterized protein ydbD n=50 Tax=Enterobact... 1571 0.0 UniRef50_UPI0001746BFD hypothetical protein VspiD_32385 n=1 Tax=... 62 6e-08 UniRef50_P75704 Putative uncharacterized protein ykiA n=47 Tax=B... 58 1e-06 UniRef50_Q1D422 Putative uncharacterized protein n=1 Tax=Myxococ... 52 1e-04 UniRef50_Q1CX27 Putative uncharacterized protein n=1 Tax=Myxococ... 45 0.012 >UniRef50_P25907 Uncharacterized protein ydbD n=50 Tax=Enterobacteriaceae RepID=YDBD_ECOLI Length = 768 Score = 1571 bits (4067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 768/768 (100%), Positives = 768/768 (100%) Query: 1 MLKARNCGWIRLLPLFMLSLPVQAELRCVANAVDIESFFSAATAEDKQQVEQAINSSVNL 60 MLKARNCGWIRLLPLFMLSLPVQAELRCVANAVDIESFFSAATAEDKQQVEQAINSSVNL Sbjct: 1 MLKARNCGWIRLLPLFMLSLPVQAELRCVANAVDIESFFSAATAEDKQQVEQAINSSVNL 60 Query: 61 VPFGLSASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN 120 VPFGLSASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN Sbjct: 61 VPFGLSASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN 120 Query: 121 IVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV 180 IVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV Sbjct: 121 IVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV 180 Query: 181 RASDKHDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR 240 RASDKHDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR Sbjct: 181 RASDKHDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR 240 Query: 241 PKPSPELVQELQMLDEGKVAAFEGRDIATFDLAVMRTLPRLKGISANLRKQLINSNDEQT 300 PKPSPELVQELQMLDEGKVAAFEGRDIATFDLAVMRTLPRLKGISANLRKQLINSNDEQT Sbjct: 241 PKPSPELVQELQMLDEGKVAAFEGRDIATFDLAVMRTLPRLKGISANLRKQLINSNDEQT 300 Query: 301 IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRE 360 IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRE Sbjct: 301 IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRE 360 Query: 361 NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM 420 NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM Sbjct: 361 NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM 420 Query: 421 QLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAGYLYQKFENDDDLIRVLFLAL 480 QLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAGYLYQKFENDDDLIRVLFLAL Sbjct: 421 QLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAGYLYQKFENDDDLIRVLFLAL 480 Query: 481 PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSM 540 PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSM Sbjct: 481 PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSM 540 Query: 541 KQKIWQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNATALIRSDDWDFL 600 KQKIWQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNATALIRSDDWDFL Sbjct: 541 KQKIWQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNATALIRSDDWDFL 600 Query: 601 ESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQ 660 ESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQ Sbjct: 601 ESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQ 660 Query: 661 LDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD 720 LDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD Sbjct: 661 LDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD 720 Query: 721 VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY 768 VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY Sbjct: 721 VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY 768 >UniRef50_UPI0001746BFD hypothetical protein VspiD_32385 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746BFD Length = 779 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 2/98 (2%) Query: 68 SNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVADSPL 127 +W +H GDL+V+ +N L+V GNL V+G +S S V+ G+V A +I++ L Sbjct: 104 GDWYMHEGDLIVDSGFRNNLNLVVRGNLIVRGVLSDLDDSASLVVTGDVLAHHILSRQLL 163 Query: 128 LITGSINASGLVFIDSYYDNPSTIKGSI-NARGIFIND 164 ++ GS+ SGLV D Y D + G + +R I D Sbjct: 164 VVLGSLRCSGLVHAD-YNDWSFEVWGPVFESRAYIITD 200 >UniRef50_P75704 Putative uncharacterized protein ykiA n=47 Tax=Bacteria RepID=YKIA_ECOLI Length = 93 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 47/84 (55%) Query: 683 FFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVDVLKARLKRDPLLALELVNPELD 742 + AL N HTP +L +P+ +A+NNP+ DV A LK DP L L + P+L Sbjct: 8 HLRQTALRNAHTPALLLTTLTEPQDRSLAINNPQLAADVKTAWLKEDPSLLLFVEQPDLS 67 Query: 743 LVRQLALNGKTRAIREQAMRKLDE 766 L+R L G TR IR +A +L+E Sbjct: 68 LLRDLVKTGATRKIRSEARHRLEE 91 >UniRef50_Q1D422 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D422_MYXXD Length = 367 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 10/98 (10%) Query: 67 ASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVADSP 126 + N VH GDLVVEG ++ L+V GNLTVKG S F +V G+ + P Sbjct: 258 SKNPFVHHGDLVVEGPLKV-LSLLVTGNLTVKGKASNFEGCQLFV-GGDFECDTFQTEGP 315 Query: 127 LLITGSINASGLVFIDSYYDNPSTIKGSINARGIFIND 164 ++I G++ AS +D++Y++ S++ RG+ D Sbjct: 316 VIIGGNLKAST---VDAFYNDY-----SLDVRGVLTAD 345 >UniRef50_Q1CX27 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CX27_MYXXD Length = 669 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 13/117 (11%) Query: 74 RGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVADSPLLITGSI 133 RGDLVV+G++ + L+V G+LTV+G + + V+ G + AT + D +++ + Sbjct: 525 RGDLVVKGDVHVDGPLLVTGDLTVEGVLRNAGMEGMLVVGGTLRATGVDTDGEVVVGEDL 584 Query: 134 NASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMVRASDKHDTEN 190 A + G N + + ++ V + + + + KH EN Sbjct: 585 EA-------------QVVWGHGNDASLRVGRVLKADVVIADDHDIQAKVKAKHHYEN 628 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P25907 Uncharacterized protein ydbD n=50 Tax=Enterobact... 1517 0.0 UniRef50_UPI0001746BFD hypothetical protein VspiD_32385 n=1 Tax=... 142 5e-32 UniRef50_P75704 Putative uncharacterized protein ykiA n=47 Tax=B... 130 3e-28 UniRef50_Q1D422 Putative uncharacterized protein n=1 Tax=Myxococ... 119 4e-25 Sequences not found previously or not previously below threshold: UniRef50_C7PKK1 Putative uncharacterized protein n=1 Tax=Chitino... 80 3e-13 UniRef50_Q1CX27 Putative uncharacterized protein n=1 Tax=Myxococ... 55 1e-05 UniRef50_B9Y7W2 Putative uncharacterized protein n=1 Tax=Holdema... 45 0.007 >UniRef50_P25907 Uncharacterized protein ydbD n=50 Tax=Enterobacteriaceae RepID=YDBD_ECOLI Length = 768 Score = 1517 bits (3927), Expect = 0.0, Method: Composition-based stats. Identities = 768/768 (100%), Positives = 768/768 (100%) Query: 1 MLKARNCGWIRLLPLFMLSLPVQAELRCVANAVDIESFFSAATAEDKQQVEQAINSSVNL 60 MLKARNCGWIRLLPLFMLSLPVQAELRCVANAVDIESFFSAATAEDKQQVEQAINSSVNL Sbjct: 1 MLKARNCGWIRLLPLFMLSLPVQAELRCVANAVDIESFFSAATAEDKQQVEQAINSSVNL 60 Query: 61 VPFGLSASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN 120 VPFGLSASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN Sbjct: 61 VPFGLSASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN 120 Query: 121 IVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV 180 IVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV Sbjct: 121 IVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV 180 Query: 181 RASDKHDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR 240 RASDKHDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR Sbjct: 181 RASDKHDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR 240 Query: 241 PKPSPELVQELQMLDEGKVAAFEGRDIATFDLAVMRTLPRLKGISANLRKQLINSNDEQT 300 PKPSPELVQELQMLDEGKVAAFEGRDIATFDLAVMRTLPRLKGISANLRKQLINSNDEQT Sbjct: 241 PKPSPELVQELQMLDEGKVAAFEGRDIATFDLAVMRTLPRLKGISANLRKQLINSNDEQT 300 Query: 301 IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRE 360 IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRE Sbjct: 301 IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRE 360 Query: 361 NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM 420 NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM Sbjct: 361 NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM 420 Query: 421 QLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAGYLYQKFENDDDLIRVLFLAL 480 QLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAGYLYQKFENDDDLIRVLFLAL Sbjct: 421 QLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAGYLYQKFENDDDLIRVLFLAL 480 Query: 481 PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSM 540 PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSM Sbjct: 481 PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSM 540 Query: 541 KQKIWQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNATALIRSDDWDFL 600 KQKIWQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNATALIRSDDWDFL Sbjct: 541 KQKIWQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNATALIRSDDWDFL 600 Query: 601 ESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQ 660 ESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQ Sbjct: 601 ESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQ 660 Query: 661 LDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD 720 LDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD Sbjct: 661 LDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD 720 Query: 721 VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY 768 VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY Sbjct: 721 VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY 768 >UniRef50_UPI0001746BFD hypothetical protein VspiD_32385 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746BFD Length = 779 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 2/98 (2%) Query: 68 SNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVADSPL 127 +W +H GDL+V+ +N L+V GNL V+G +S S V+ G+V A +I++ L Sbjct: 104 GDWYMHEGDLIVDSGFRNNLNLVVRGNLIVRGVLSDLDDSASLVVTGDVLAHHILSRQLL 163 Query: 128 LITGSINASGLVFIDSYYDNPSTIKGSI-NARGIFIND 164 ++ GS+ SGLV D Y D + G + +R I D Sbjct: 164 VVLGSLRCSGLVHAD-YNDWSFEVWGPVFESRAYIITD 200 >UniRef50_P75704 Putative uncharacterized protein ykiA n=47 Tax=Bacteria RepID=YKIA_ECOLI Length = 93 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 50/91 (54%) Query: 676 LAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVDVLKARLKRDPLLALE 735 + +S + AL N HTP +L +P+ +A+NNP+ DV A LK DP L L Sbjct: 1 MLQSRNDHLRQTALRNAHTPALLLTTLTEPQDRSLAINNPQLAADVKTAWLKEDPSLLLF 60 Query: 736 LVNPELDLVRQLALNGKTRAIREQAMRKLDE 766 + P+L L+R L G TR IR +A +L+E Sbjct: 61 VEQPDLSLLRDLVKTGATRKIRSEARHRLEE 91 >UniRef50_Q1D422 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D422_MYXXD Length = 367 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 10/98 (10%) Query: 67 ASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVADSP 126 + N VH GDLVVEG ++ L+V GNLTVKG S F +V G+ + P Sbjct: 258 SKNPFVHHGDLVVEGPLKV-LSLLVTGNLTVKGKASNFEGCQLFV-GGDFECDTFQTEGP 315 Query: 127 LLITGSINASGLVFIDSYYDNPSTIKGSINARGIFIND 164 ++I G++ AS +D++Y++ S++ RG+ D Sbjct: 316 VIIGGNLKAST---VDAFYNDY-----SLDVRGVLTAD 345 >UniRef50_C7PKK1 Putative uncharacterized protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PKK1_CHIPD Length = 363 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 20/168 (11%) Query: 10 IRLLPLFMLSLPVQAELRCVANAVDIE-------SFFSAATAEDKQQVEQAINSSVNLVP 62 ++ LP +S Q +L + ++ IE +F+ +D + V I+ N + Sbjct: 183 LKYLPQVSISANQQQKLHNIIESLFIEEYSVKLANFYEIIAVQDPELVFACISLITNAIT 242 Query: 63 FGLS-------ASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGN 115 + A+ VH G+L V G+++ L+V GN TVKG+ S +V G+ Sbjct: 243 KAPAQKTVKSIAAEHYVHHGNLEVTGSLKIR-SLMVTGNCTVKGHASNVQGCQLFV-GGD 300 Query: 116 VTATNIVADSPLLITGSINASGLVFIDSYYDNPS-TIKGSINARGIFI 162 ++ + P++I G++ A+ +++YY++ + +K ++ + I Sbjct: 301 FECASMYTEGPVIIGGNLKAA---KVETYYNDYALEVKQTLQTDTLII 345 >UniRef50_Q1CX27 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CX27_MYXXD Length = 669 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 13/124 (10%) Query: 67 ASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVADSP 126 + + RGDLVV+G++ + L+V G+LTV+G + + V+ G + AT + D Sbjct: 518 SKLPRFVRGDLVVKGDVHVDGPLLVTGDLTVEGVLRNAGMEGMLVVGGTLRATGVDTDGE 577 Query: 127 LLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMVRASDKH 186 +++ + A + S+ + D+ V+A + + V+A KH Sbjct: 578 VVVGEDLEAQVV--------WGHGNDASLRVGRVLKADV---VIADDHDIQAKVKA--KH 624 Query: 187 DTEN 190 EN Sbjct: 625 HYEN 628 >UniRef50_B9Y7W2 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7W2_9FIRM Length = 1298 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 17/172 (9%) Query: 600 LESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALA 659 L + L WD+L + + L + P +++ +Q + ++ + LR+ Y L P A A Sbjct: 1045 LGAILDRWDHL--ALFQRLLEEGPSLNLYLLCAEKQISRLPLRLAQNLRIRYILGPAAPA 1102 Query: 660 QLDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPV 719 QL ++ +R W LA FFK ++ P E+ P+ W + PR P Sbjct: 1103 QL---SEALERTWTQPLAAGKGLFFKESVMDFVLARPLPPPVEMKPKRWQL----PRLPE 1155 Query: 720 DVLKARLKR-------DPLLALELVNPELDLVRQLALNGKTRAIREQAMRKL 764 + ++ LK+ DP+L + V L + L + G ++ +R+L Sbjct: 1156 RLPRSWLKKKAVFLGVDPILC-QPVYTTLQARQHLVVTGYDASLCAARIRQL 1206 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P25907 Uncharacterized protein ydbD n=50 Tax=Enterobact... 1463 0.0 UniRef50_C7PKK1 Putative uncharacterized protein n=1 Tax=Chitino... 187 2e-45 UniRef50_P75704 Putative uncharacterized protein ykiA n=47 Tax=B... 139 3e-31 UniRef50_Q1CX27 Putative uncharacterized protein n=1 Tax=Myxococ... 138 1e-30 UniRef50_Q1D422 Putative uncharacterized protein n=1 Tax=Myxococ... 126 3e-27 UniRef50_UPI0001746BFD hypothetical protein VspiD_32385 n=1 Tax=... 124 2e-26 Sequences not found previously or not previously below threshold: UniRef50_Q1DBU5 Putative uncharacterized protein n=1 Tax=Myxococ... 48 0.002 UniRef50_B9Y7W2 Putative uncharacterized protein n=1 Tax=Holdema... 46 0.006 UniRef50_D2VWU8 Predicted protein n=2 Tax=Naegleria gruberi RepI... 44 0.021 >UniRef50_P25907 Uncharacterized protein ydbD n=50 Tax=Enterobacteriaceae RepID=YDBD_ECOLI Length = 768 Score = 1463 bits (3787), Expect = 0.0, Method: Composition-based stats. Identities = 768/768 (100%), Positives = 768/768 (100%) Query: 1 MLKARNCGWIRLLPLFMLSLPVQAELRCVANAVDIESFFSAATAEDKQQVEQAINSSVNL 60 MLKARNCGWIRLLPLFMLSLPVQAELRCVANAVDIESFFSAATAEDKQQVEQAINSSVNL Sbjct: 1 MLKARNCGWIRLLPLFMLSLPVQAELRCVANAVDIESFFSAATAEDKQQVEQAINSSVNL 60 Query: 61 VPFGLSASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN 120 VPFGLSASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN Sbjct: 61 VPFGLSASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATN 120 Query: 121 IVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV 180 IVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV Sbjct: 121 IVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFINDIIAPVVASSTNSEFMV 180 Query: 181 RASDKHDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR 240 RASDKHDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR Sbjct: 181 RASDKHDTENVKKALMIINPDAYYWGLINDEDALKEIFKRSNIRMAGNVCNQMKKEALFR 240 Query: 241 PKPSPELVQELQMLDEGKVAAFEGRDIATFDLAVMRTLPRLKGISANLRKQLINSNDEQT 300 PKPSPELVQELQMLDEGKVAAFEGRDIATFDLAVMRTLPRLKGISANLRKQLINSNDEQT Sbjct: 241 PKPSPELVQELQMLDEGKVAAFEGRDIATFDLAVMRTLPRLKGISANLRKQLINSNDEQT 300 Query: 301 IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRE 360 IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRE Sbjct: 301 IESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRE 360 Query: 361 NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM 420 NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM Sbjct: 361 NLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAM 420 Query: 421 QLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAGYLYQKFENDDDLIRVLFLAL 480 QLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAGYLYQKFENDDDLIRVLFLAL Sbjct: 421 QLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAGYLYQKFENDDDLIRVLFLAL 480 Query: 481 PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSM 540 PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSM Sbjct: 481 PDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSM 540 Query: 541 KQKIWQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNATALIRSDDWDFL 600 KQKIWQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNATALIRSDDWDFL Sbjct: 541 KQKIWQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNATALIRSDDWDFL 600 Query: 601 ESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQ 660 ESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQ Sbjct: 601 ESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQ 660 Query: 661 LDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD 720 LDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD Sbjct: 661 LDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVD 720 Query: 721 VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY 768 VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY Sbjct: 721 VLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY 768 >UniRef50_C7PKK1 Putative uncharacterized protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PKK1_CHIPD Length = 363 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 86/187 (45%), Gaps = 22/187 (11%) Query: 10 IRLLPLFMLSLPVQAELRCVANAVDIE-------SFFSAATAEDKQQVEQAINSSVNLVP 62 ++ LP +S Q +L + ++ IE +F+ +D + V I+ N + Sbjct: 183 LKYLPQVSISANQQQKLHNIIESLFIEEYSVKLANFYEIIAVQDPELVFACISLITNAIT 242 Query: 63 FGLS-------ASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGN 115 + A+ VH G+L V G+++ L+V GN TVKG+ S +V G+ Sbjct: 243 KAPAQKTVKSIAAEHYVHHGNLEVTGSLKIR-SLMVTGNCTVKGHASNVQGCQLFV-GGD 300 Query: 116 VTATNIVADSPLLITGSINASGLVFIDSYYDNPS-TIKGSINARGIFINDIIAPVVASST 174 ++ + P++I G++ A+ +++YY++ + +K ++ + I+ V+A Sbjct: 301 FECASMYTEGPVIIGGNLKAA---KVETYYNDYALEVKQTLQTDTLIID--HHQVIAGQF 355 Query: 175 NSEFMVR 181 + + + Sbjct: 356 DVKERIE 362 >UniRef50_P75704 Putative uncharacterized protein ykiA n=47 Tax=Bacteria RepID=YKIA_ECOLI Length = 93 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 50/91 (54%) Query: 676 LAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVDVLKARLKRDPLLALE 735 + +S + AL N HTP +L +P+ +A+NNP+ DV A LK DP L L Sbjct: 1 MLQSRNDHLRQTALRNAHTPALLLTTLTEPQDRSLAINNPQLAADVKTAWLKEDPSLLLF 60 Query: 736 LVNPELDLVRQLALNGKTRAIREQAMRKLDE 766 + P+L L+R L G TR IR +A +L+E Sbjct: 61 VEQPDLSLLRDLVKTGATRKIRSEARHRLEE 91 >UniRef50_Q1CX27 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CX27_MYXXD Length = 669 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 17/150 (11%) Query: 45 EDKQQVEQAINSSVNLVP---FGLS-ASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGN 100 E + + +++P + + RGDLVV+G++ + L+V G+LTV+G Sbjct: 492 ELPWTAMAVVQLARDVLPAEEKAPRLSKLPRFVRGDLVVKGDVHVDGPLLVTGDLTVEGV 551 Query: 101 ISTFSLSNPWVILGNVTATNIVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI 160 + + V+ G + AT + D +++ + A + S+ + Sbjct: 552 LRNAGMEGMLVVGGTLRATGVDTDGEVVVGEDLEAQVV--------WGHGNDASLRVGRV 603 Query: 161 FINDIIAPVVASSTNSEFMVRASDKHDTEN 190 D+ V+A + + V+A KH EN Sbjct: 604 LKADV---VIADDHDIQAKVKA--KHHYEN 628 >UniRef50_Q1D422 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D422_MYXXD Length = 367 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 27/158 (17%) Query: 24 AELRCVANAVDIESF-------FSAATAE---DKQQVEQAINSSVNLVPFGLSAS----- 68 +LR +V +E + ++ + V I+ + ++ Sbjct: 198 EQLRAFMESVFVEEYSVTIDQLYAGIAEHGNTNAPLVFATIDLIRQVATRAPASKTLKKV 257 Query: 69 --NWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVADSP 126 N VH GDLVVEG ++ L+V GNLTVKG S F +V G+ + P Sbjct: 258 SKNPFVHHGDLVVEGPLKV-LSLLVTGNLTVKGKASNFEGCQLFV-GGDFECDTFQTEGP 315 Query: 127 LLITGSINASGLVFIDSYYDNPSTIKGSINARGIFIND 164 ++I G++ AS +D++Y++ S++ RG+ D Sbjct: 316 VIIGGNLKAST---VDAFYNDY-----SLDVRGVLTAD 345 >UniRef50_UPI0001746BFD hypothetical protein VspiD_32385 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746BFD Length = 779 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 3/129 (2%) Query: 68 SNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNISTFSLSNPWVILGNVTATNIVADSPL 127 +W +H GDL+V+ +N L+V GNL V+G +S S V+ G+V A +I++ L Sbjct: 104 GDWYMHEGDLIVDSGFRNNLNLVVRGNLIVRGVLSDLDDSASLVVTGDVLAHHILSRQLL 163 Query: 128 LITGSINASGLVFIDSYYDNPSTIKGSI-NARGIFINDIIAPVVASSTNSEFMVRASDKH 186 ++ GS+ SGLV D Y D + G + +R I D + + E++ A Sbjct: 164 VVLGSLRCSGLVHAD-YNDWSFEVWGPVFESRAYIITD-RSTMHPDDLKVEYLYNADSAT 221 Query: 187 DTENVKKAL 195 +K L Sbjct: 222 GKGTAEKVL 230 >UniRef50_Q1DBU5 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DBU5_MYXXD Length = 203 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 16/131 (12%) Query: 58 VNLVPFGLSASNWKVHRGD--------LVVEGNI--ESNQKLIVLGNLTVKGNISTFS-L 106 N + + + K+ GD +VV+GN+ E +L+V G+L V+G+I Sbjct: 31 TNSGATEVVSGDLKLSEGDDRVLEASRVVVKGNLVLEDQSRLLVAGDLEVEGSIIHEGFD 90 Query: 107 SNPWVILGNVTATNIVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGIFIN--- 163 G ++A N++ L+ G I + + +YY++ ST S+ AR + Sbjct: 91 YALLFTGGALSAKNLLFHGELVSLGPITVQQVAW--TYYNDYSTYSDSLKARIVVAADRF 148 Query: 164 DIIAPVVASST 174 D + V A Sbjct: 149 DAVDDVQADHH 159 >UniRef50_B9Y7W2 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7W2_9FIRM Length = 1298 Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 17/172 (9%) Query: 600 LESALISWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALA 659 L + L WD+L + + L + P +++ +Q + ++ + LR+ Y L P A A Sbjct: 1045 LGAILDRWDHL--ALFQRLLEEGPSLNLYLLCAEKQISRLPLRLAQNLRIRYILGPAAPA 1102 Query: 660 QLDVLAKQPDRIWWSTLAKSNLTFFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPV 719 QL ++ +R W LA FFK ++ P E+ P+ W + PR P Sbjct: 1103 QL---SEALERTWTQPLAAGKGLFFKESVMDFVLARPLPPPVEMKPKRWQL----PRLPE 1155 Query: 720 DVLKARLKR-------DPLLALELVNPELDLVRQLALNGKTRAIREQAMRKL 764 + ++ LK+ DP+L + V L + L + G ++ +R+L Sbjct: 1156 RLPRSWLKKKAVFLGVDPILC-QPVYTTLQARQHLVVTGYDASLCAARIRQL 1206 >UniRef50_D2VWU8 Predicted protein n=2 Tax=Naegleria gruberi RepID=D2VWU8_NAEGR Length = 753 Score = 44.3 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 10/116 (8%) Query: 73 HRGDLVVEGNIESNQKLIVLGNLTVKGNIS-TFSLSNPWVILGNVTATNIVADSPLLITG 131 G+ V GN+ N L++ GNLT+ G + S + V G+ T + +++ G Sbjct: 644 VNGETHVNGNLTLNHALLITGNLTINGTVHLNHSNAAIIVQGGDFT-----SIGGIVVNG 698 Query: 132 SINASGLVFIDSYYDNPSTIKGSINARGIFIND--IIAPVVASSTNSEFMVRASDK 185 + SG + S S + S++A G D I A V + +++S K Sbjct: 699 TAVVSGTFSVKSTDVESSIV--SVSADGALRADNVITAMTVTDMAFTSIKMKSSRK 752 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.317 0.132 0.369 Lambda K H 0.267 0.0404 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,338,632,731 Number of Sequences: 3077464 Number of extensions: 173690369 Number of successful extensions: 471832 Number of sequences better than 1.0e-01: 10 Number of HSP's better than 0.1 without gapping: 14 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 471768 Number of HSP's gapped (non-prelim): 40 length of query: 768 length of database: 1,040,396,356 effective HSP length: 137 effective length of query: 631 effective length of database: 618,783,788 effective search space: 390452570228 effective search space used: 390452570228 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 97 (42.0 bits)