BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (64 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P64527 Uncharacterized protein yeeW n=53 Tax=Enterobact... 130 9e-30 UniRef50_Q8VR62 L0008-like protein n=194 Tax=Enterobacteriaceae ... 82 5e-15 UniRef50_B3HDU0 Aec77 n=1 Tax=Escherichia coli B7A RepID=B3HDU0_... 80 2e-14 >UniRef50_P64527 Uncharacterized protein yeeW n=53 Tax=Enterobacteriaceae RepID=YEEW_ECO57 Length = 64 Score = 130 bits (328), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 64/64 (100%), Positives = 64/64 (100%) Query: 1 MMTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRVVDDRDSTETPATYASP 60 MMTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRVVDDRDSTETPATYASP Sbjct: 1 MMTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRVVDDRDSTETPATYASP 60 Query: 61 HQLL 64 HQLL Sbjct: 61 HQLL 64 >UniRef50_Q8VR62 L0008-like protein n=194 Tax=Enterobacteriaceae RepID=Q8VR62_ECOLX Length = 195 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 40/60 (66%), Positives = 49/60 (81%), Gaps = 2/60 (3%) Query: 2 MTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRVVD--DRDSTETPATYAS 59 +TLEADS+NVQAL+MG IVVD+DGVN+ ELIN AENGYSLRVV+ D+ ST TP + + Sbjct: 5 LTLEADSINVQALNMGRIVVDVDGVNLAELINHVAENGYSLRVVEESDQQSTCTPPPFTA 64 >UniRef50_B3HDU0 Aec77 n=1 Tax=Escherichia coli B7A RepID=B3HDU0_ECOLX Length = 145 Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 37/52 (71%), Positives = 44/52 (84%) Query: 2 MTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRVVDDRDSTET 53 + LEAD +NVQAL+MG IVVD+DGVN+TELINK AENGYSLRVV++ D T Sbjct: 5 LMLEADRINVQALNMGRIVVDVDGVNLTELINKVAENGYSLRVVEESDQQST 56 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8VR62 L0008-like protein n=194 Tax=Enterobacteriaceae ... 106 3e-22 UniRef50_P64527 Uncharacterized protein yeeW n=53 Tax=Enterobact... 103 2e-21 UniRef50_B3HDU0 Aec77 n=1 Tax=Escherichia coli B7A RepID=B3HDU0_... 99 3e-20 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_Q8VR62 L0008-like protein n=194 Tax=Enterobacteriaceae RepID=Q8VR62_ECOLX Length = 195 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 40/60 (66%), Positives = 49/60 (81%), Gaps = 2/60 (3%) Query: 2 MTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRVVD--DRDSTETPATYAS 59 +TLEADS+NVQAL+MG IVVD+DGVN+ ELIN AENGYSLRVV+ D+ ST TP + + Sbjct: 5 LTLEADSINVQALNMGRIVVDVDGVNLAELINHVAENGYSLRVVEESDQQSTCTPPPFTA 64 >UniRef50_P64527 Uncharacterized protein yeeW n=53 Tax=Enterobacteriaceae RepID=YEEW_ECO57 Length = 64 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 64/64 (100%), Positives = 64/64 (100%) Query: 1 MMTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRVVDDRDSTETPATYASP 60 MMTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRVVDDRDSTETPATYASP Sbjct: 1 MMTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRVVDDRDSTETPATYASP 60 Query: 61 HQLL 64 HQLL Sbjct: 61 HQLL 64 >UniRef50_B3HDU0 Aec77 n=1 Tax=Escherichia coli B7A RepID=B3HDU0_ECOLX Length = 145 Score = 99.3 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 40/60 (66%), Positives = 49/60 (81%), Gaps = 2/60 (3%) Query: 2 MTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRVVD--DRDSTETPATYAS 59 + LEAD +NVQAL+MG IVVD+DGVN+TELINK AENGYSLRVV+ D+ ST T +A+ Sbjct: 5 LMLEADRINVQALNMGRIVVDVDGVNLTELINKVAENGYSLRVVEESDQQSTCTLPPFAT 64 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.316 0.139 0.376 Lambda K H 0.267 0.0398 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 219,076,784 Number of Sequences: 3077464 Number of extensions: 6086872 Number of successful extensions: 15144 Number of sequences better than 1.0e-01: 3 Number of HSP's better than 0.1 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15136 Number of HSP's gapped (non-prelim): 6 length of query: 64 length of database: 1,040,396,356 effective HSP length: 36 effective length of query: 28 effective length of database: 929,607,652 effective search space: 26029014256 effective search space used: 26029014256 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 87 (38.2 bits)