BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (495 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_D0KHM4 NusA antitermination factor n=18 Tax=Proteobacte... 828 0.0 UniRef50_Q1LSK7 Transcription termination factor NusA n=7 Tax=Ga... 774 0.0 UniRef50_Q3J9B5 NusA antitermination factor n=3 Tax=Gammaproteob... 566 e-160 UniRef50_Q83BS0 Transcription elongation protein nusA n=504 Tax=... 561 e-158 UniRef50_A4G7S8 Transcription elongation protein nusA (N utiliza... 448 e-124 UniRef50_C4GHM6 Putative uncharacterized protein n=1 Tax=Kingell... 427 e-118 UniRef50_A5EWZ0 Transcription termination factor n=1 Tax=Dichelo... 411 e-113 UniRef50_A0LE21 NusA antitermination factor n=14 Tax=Bacteria Re... 388 e-106 UniRef50_Q0C5Z7 Transcription termination factor NusA n=110 Tax=... 387 e-106 UniRef50_D1KAN2 Transcription elongation factor n=1 Tax=uncultur... 385 e-105 UniRef50_A0Q8F4 Transcription elongation factor n=17 Tax=Francis... 384 e-105 UniRef50_Q1V1E6 Transcription termination factor n=3 Tax=Candida... 358 4e-97 UniRef50_Q9ZCZ7 Transcription elongation protein nusA n=20 Tax=A... 347 7e-94 UniRef50_B8FCY4 NusA antitermination factor n=3 Tax=Desulfobacte... 327 7e-88 UniRef50_Q28WF5 NusA antitermination factor n=74 Tax=Bacteria Re... 327 7e-88 UniRef50_A8ZZ66 NusA antitermination factor n=3 Tax=Deltaproteob... 323 7e-87 UniRef50_C9KKC1 Transcription termination factor NusA n=1 Tax=Mi... 291 4e-77 UniRef50_Q1DAM8 Transcription termination factor NusA n=11 Tax=B... 291 5e-77 UniRef50_Q1MQY9 Transcription elongation factor n=2 Tax=Desulfov... 284 4e-75 UniRef50_Q6MMS7 N utilization substance protein A n=1 Tax=Bdello... 282 2e-74 UniRef50_B5JHK3 Transcription termination factor NusA n=1 Tax=Ve... 278 4e-73 UniRef50_B8J1Y6 NusA antitermination factor n=5 Tax=Desulfovibri... 278 5e-73 UniRef50_D1AUG3 Transcription elongation factor n=5 Tax=Anaplasm... 277 5e-73 UniRef50_C6C0D5 NusA antitermination factor n=7 Tax=Deltaproteob... 275 4e-72 UniRef50_D1U699 NusA antitermination factor n=1 Tax=Desulfovibri... 274 5e-72 UniRef50_B5YJX4 Transcription termination factor NusA n=1 Tax=Th... 266 1e-69 UniRef50_Q9KA74 Transcription elongation protein nusA n=309 Tax=... 265 3e-69 UniRef50_C1A8N6 Transcription elongation protein NusA n=1 Tax=Ge... 264 7e-69 UniRef50_B2KC94 NusA antitermination factor n=1 Tax=Elusimicrobi... 263 8e-69 UniRef50_Q5GS98 Transcription elongation factor, NusA n=13 Tax=R... 262 2e-68 UniRef50_B3SFF1 Putative uncharacterized protein (Fragment) n=1 ... 262 2e-68 UniRef50_B9XFC0 NusA antitermination factor n=1 Tax=bacterium El... 262 3e-68 UniRef50_A6TRL0 NusA antitermination factor n=5 Tax=Firmicutes R... 261 5e-68 UniRef50_D2L1U7 NusA antitermination factor n=1 Tax=Desulfovibri... 260 8e-68 UniRef50_B6AR17 Transcription termination factor (NusA) n=4 Tax=... 259 1e-67 UniRef50_C4XIM5 Transcription elongation protein NusA n=4 Tax=De... 258 3e-67 UniRef50_UPI0001C3544A transcription elongation factor NusA n=1 ... 256 2e-66 UniRef50_B1ZX42 NusA antitermination factor n=1 Tax=Opitutus ter... 255 2e-66 UniRef50_Q044C0 Transcription elongation factor n=45 Tax=Bacilli... 253 8e-66 UniRef50_B3WER8 Transcription elongation protein NusA (Transcrip... 251 5e-65 UniRef50_B3DXW5 Transcription elongation factor n=2 Tax=Verrucom... 250 7e-65 UniRef50_Q7URQ7 N utilization substance protein A n=1 Tax=Rhodop... 249 2e-64 UniRef50_D1N2Z3 NusA antitermination factor n=1 Tax=Victivallis ... 249 2e-64 UniRef50_D2R7W7 NusA antitermination factor n=1 Tax=Pirellula st... 246 1e-63 UniRef50_C1SH20 Transcription termination factor NusA n=1 Tax=De... 244 4e-63 UniRef50_C1F696 Transcription termination factor NusA n=1 Tax=Ac... 244 5e-63 UniRef50_P48514 Transcription elongation protein nusA n=8 Tax=De... 244 6e-63 UniRef50_B2UQQ4 NusA antitermination factor n=2 Tax=Verrucomicro... 244 6e-63 UniRef50_B2GBN4 Transcription termination-antitermination factor... 243 1e-62 UniRef50_B1GZN5 Transcription antitermination factor NusA n=1 Ta... 242 3e-62 UniRef50_B2V8D7 NusA antitermination factor n=2 Tax=Sulfurihydro... 242 3e-62 UniRef50_A6NTX6 Putative uncharacterized protein n=2 Tax=Bacteri... 241 5e-62 UniRef50_C7RGN8 NusA antitermination factor n=7 Tax=Clostridiale... 240 1e-61 UniRef50_Q01W32 NusA antitermination factor n=3 Tax=Bacteria Rep... 239 2e-61 UniRef50_A6CF45 Transcription elongation factor NusA n=3 Tax=Pla... 239 2e-61 UniRef50_UPI0001C31DB6 NusA antitermination factor n=1 Tax=Conex... 238 3e-61 UniRef50_C0QTL7 Transcription termination factor NusA n=2 Tax=Hy... 238 5e-61 UniRef50_A8SMZ8 Putative uncharacterized protein n=1 Tax=Parvimo... 236 2e-60 UniRef50_C1TMK5 Transcription termination factor NusA n=1 Tax=De... 235 3e-60 UniRef50_A9AV46 NusA antitermination factor n=11 Tax=Bacteria Re... 234 4e-60 UniRef50_Q1Q1G4 Strongly similar to transcription elongation pro... 234 8e-60 UniRef50_D1B5D7 NusA antitermination factor n=3 Tax=Synergistace... 234 8e-60 UniRef50_Q3Z7U1 N utilization substance protein A n=5 Tax=Dehalo... 232 3e-59 UniRef50_A8F3W1 NusA antitermination factor n=12 Tax=Thermotogac... 232 3e-59 UniRef50_B5YEH2 Transcription termination factor NusA n=2 Tax=Di... 230 1e-58 UniRef50_C4Z5N4 N utilization substance protein A n=1 Tax=Eubact... 230 1e-58 UniRef50_D1AL29 NusA antitermination factor n=10 Tax=Fusobacteri... 228 3e-58 UniRef50_Q2GDP1 N utilization substance protein A n=2 Tax=Neoric... 226 1e-57 UniRef50_B0B9K5 N utilization substance protein A n=16 Tax=Chlam... 226 2e-57 UniRef50_D1PLN7 Transcription termination factor NusA n=2 Tax=Cl... 224 8e-57 UniRef50_C1QB15 Transcription termination factor NusA n=2 Tax=Br... 222 3e-56 UniRef50_B1CB56 Putative uncharacterized protein n=1 Tax=Anaerof... 222 3e-56 UniRef50_C7H125 Transcription termination factor NusA n=1 Tax=Eu... 221 6e-56 UniRef50_A3CQ21 N utilization substance protein A, putative n=42... 220 1e-55 UniRef50_D2MPS9 Transcription termination factor NusA n=3 Tax=Er... 219 2e-55 UniRef50_UPI00016C59C1 transcription elongation factor NusA n=1 ... 218 4e-55 UniRef50_C6JIH8 Transcription elongation factor NusA n=2 Tax=Fus... 218 6e-55 UniRef50_C3RL60 Transcription termination-antitermination factor... 217 7e-55 UniRef50_A6DKQ2 Transcription elongation factor NusA n=1 Tax=Len... 215 3e-54 UniRef50_C2ES49 Transcription termination factor NusA n=1 Tax=La... 215 3e-54 UniRef50_C9RKT3 NusA antitermination factor n=1 Tax=Fibrobacter ... 214 6e-54 UniRef50_C7NAM6 NusA antitermination factor n=6 Tax=Fusobacteria... 208 4e-52 UniRef50_Q0H8S9 NusA n=2 Tax=Spiroplasma RepID=Q0H8S9_SPIKU 207 9e-52 UniRef50_B0SH17 Transcription elongation factor n=6 Tax=Leptospi... 206 2e-51 UniRef50_Q04GN3 Transcription elongation factor n=18 Tax=Lactoba... 205 3e-51 UniRef50_C7LXY2 NusA antitermination factor n=1 Tax=Acidimicrobi... 204 6e-51 UniRef50_D1BJ68 Transcription termination factor NusA n=5 Tax=Ac... 201 6e-50 UniRef50_Q2S1N6 N utilization substance protein A n=5 Tax=cellul... 197 6e-49 UniRef50_Q1AW56 NusA antitermination factor n=1 Tax=Rubrobacter ... 196 1e-48 UniRef50_B2S4C9 N utilization substance protein A n=4 Tax=Trepon... 194 6e-48 UniRef50_C7NH16 Transcription termination factor NusA n=55 Tax=A... 194 7e-48 UniRef50_B8DW42 N utilization substance-like protein n=11 Tax=Bi... 193 1e-47 UniRef50_D2QL25 NusA antitermination factor n=14 Tax=Bacteria Re... 193 2e-47 UniRef50_C6X2U0 Transcription termination protein NusA n=2 Tax=F... 191 6e-47 UniRef50_D2NNU7 Transcription elongation factor n=12 Tax=Actinob... 191 6e-47 UniRef50_D0J8H0 Transcription elongation factor NusA n=36 Tax=Ba... 191 8e-47 UniRef50_Q2SSE3 Transcription elongation protein nusA, putative ... 189 3e-46 UniRef50_B2J957 NusA antitermination factor n=8 Tax=Cyanobacteri... 189 3e-46 UniRef50_B0MQX1 Putative uncharacterized protein n=1 Tax=Eubacte... 187 6e-46 UniRef50_P0A5M3 Transcription elongation protein nusA n=50 Tax=A... 186 2e-45 UniRef50_A4E6U9 Putative uncharacterized protein n=1 Tax=Collins... 185 3e-45 UniRef50_B0VFB8 Transcription elongation factor NusA n=1 Tax=Can... 182 2e-44 UniRef50_Q0I7K4 Transcription termination factor NusA n=43 Tax=c... 181 6e-44 UniRef50_UPI0001C373AB NusA antitermination factor n=1 Tax=Rumin... 179 2e-43 UniRef50_D1AY66 NusA antitermination factor n=1 Tax=Streptobacil... 179 3e-43 UniRef50_Q3B1Z7 NusA antitermination factor n=12 Tax=Chlorobiace... 172 3e-41 UniRef50_O51740 Transcription elongation protein nusA n=21 Tax=B... 172 4e-41 UniRef50_Q0EZ71 Transcription elongation factor NusA n=1 Tax=Mar... 171 8e-41 UniRef50_B7K5I0 NusA antitermination factor n=9 Tax=Cyanobacteri... 170 1e-40 UniRef50_A6QCD2 Transcription termination factor NusA n=17 Tax=E... 169 2e-40 UniRef50_C8W720 NusA antitermination factor n=9 Tax=Coriobacteri... 169 2e-40 UniRef50_B1VGB9 N utilization substance protein A n=2 Tax=Coryne... 167 1e-39 UniRef50_B4U6H2 NusA antitermination factor n=3 Tax=Aquificaceae... 166 2e-39 UniRef50_Q8EWU2 N-utilization substance protein A n=1 Tax=Mycopl... 162 3e-38 UniRef50_C3XEZ2 Transcription termination factor NusA n=2 Tax=He... 160 9e-38 UniRef50_B5Y929 Transcription termination factor NusA n=1 Tax=Co... 159 2e-37 UniRef50_A7I0Q5 Transcription termination factor NusA n=2 Tax=Ca... 157 1e-36 UniRef50_Q83N21 N utilization substance protein A n=2 Tax=Trophe... 156 2e-36 UniRef50_A8ERE7 Transcription termination factor NusA n=15 Tax=E... 155 4e-36 UniRef50_A9NF09 Transcription termination factor n=16 Tax=Achole... 153 2e-35 UniRef50_C7LKE4 Transcription elongation factor NusA n=1 Tax=Can... 151 5e-35 UniRef50_A6DBC4 Transcription elongation factor NusA n=1 Tax=Cam... 149 2e-34 UniRef50_B9PBC3 Predicted protein (Fragment) n=1 Tax=Populus tri... 149 3e-34 UniRef50_Q7VGP8 Transcription termination factor NusA n=1 Tax=He... 149 3e-34 UniRef50_Q6KIE0 N-utilization substance protein a n=1 Tax=Mycopl... 142 2e-32 UniRef50_Q9ZJA6 Transcription elongation protein nusA n=16 Tax=H... 139 2e-31 UniRef50_D1J8W2 Transcription elongation protein NusA n=1 Tax=My... 139 3e-31 UniRef50_B9L7T5 Transcription termination factor NusA n=1 Tax=Na... 138 6e-31 UniRef50_Q7NBZ6 NusA-homolog n=1 Tax=Mycoplasma gallisepticum Re... 129 3e-28 UniRef50_D2SDW8 NusA domain protein n=1 Tax=Geodermatophilus obs... 128 5e-28 UniRef50_P75591 Transcription elongation protein nusA n=2 Tax=My... 127 1e-27 UniRef50_B5ZBC7 Transcription termination factor NusA n=15 Tax=U... 119 3e-25 UniRef50_B3PNC2 Transcription elongation factor NusA n=1 Tax=Myc... 115 5e-24 UniRef50_Q96T48 Transcription termination-antitermination factor... 114 7e-24 UniRef50_C4XE33 Putative uncharacterized protein n=1 Tax=Mycopla... 109 3e-22 UniRef50_Q4A579 N-utilization substance protein A n=2 Tax=Mycopl... 105 4e-21 UniRef50_Q4A7E0 N-utilization substance protein A n=5 Tax=Mycopl... 105 4e-21 UniRef50_C5J6Y1 N-utilization substance protein A n=1 Tax=Mycopl... 103 1e-20 UniRef50_Q6MZ96 Possible nucleic acid binding protein n=3 Tax=My... 96 4e-18 UniRef50_C1E6R5 Predicted protein n=2 Tax=Micromonas RepID=C1E6R... 94 1e-17 UniRef50_A5ZWL2 Putative uncharacterized protein n=1 Tax=Ruminoc... 92 5e-17 UniRef50_A5IZE0 Transcription elongation protein NusA n=1 Tax=My... 86 2e-15 UniRef50_Q98R07 N-UTILIZATION SUBSTANCE PROTEIN A n=1 Tax=Mycopl... 78 6e-13 UniRef50_C6SA73 N utilization substance protein A n=1 Tax=Neisse... 71 1e-10 UniRef50_UPI00019018E3 transcription elongation factor NusA n=2 ... 66 2e-09 UniRef50_UPI0000D54FAD transcription elongation factor NusA n=1 ... 66 3e-09 UniRef50_A4RY26 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 64 1e-08 UniRef50_D0PA07 Transcription elongation factor NusA n=4 Tax=Rhi... 64 2e-08 UniRef50_P15739 NusA protein homolog n=9 Tax=Halobacteriaceae Re... 48 0.001 UniRef50_O27128 Transcription termination factor NusA n=6 Tax=Eu... 46 0.003 UniRef50_D1YXX1 NusA protein homolog n=9 Tax=Euryarchaeota RepID... 46 0.004 UniRef50_Q2FPJ7 NusA family KH domain protein n=1 Tax=Methanospi... 45 0.005 UniRef50_Q2S1M7 Ribosomal protein S1, putative n=2 Tax=Rhodother... 45 0.006 UniRef50_C7NTX6 NusA family KH domain protein n=1 Tax=Halorhabdu... 44 0.019 UniRef50_P11523 NusA protein homolog n=15 Tax=Thermoprotei RepID... 44 0.019 UniRef50_A2ST95 NusA family KH domain protein n=5 Tax=Methanomic... 42 0.037 UniRef50_A8MB76 Putative ski2-type helicase n=1 Tax=Caldivirga m... 42 0.041 UniRef50_B1L737 NusA family KH domain protein n=1 Tax=Candidatus... 42 0.053 >UniRef50_D0KHM4 NusA antitermination factor n=18 Tax=Proteobacteria RepID=D0KHM4_PECWW Length = 509 Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/507 (85%), Positives = 467/507 (92%), Gaps = 13/507 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKEILAVVEAVSNEK+LPREKIFEALE+ALATATKKKYEQEIDVRV IDRK+GDFDTFR Sbjct: 1 MNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFR 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 RWLVV+EVT PT+EITL+AA++ED SL++G YVEDQIESVTFDRITTQTAKQVIVQKVRE Sbjct: 61 RWLVVNEVTLPTREITLDAAQFEDPSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDL----GNN--AEAVILREDMLPRENFR 174 AERAMVVDQFRE EGEIITGVVKKVNRDNISL++ G+N AEAVI REDMLPRENFR Sbjct: 121 AERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTGAEAVIGREDMLPRENFR 180 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 PGDR+RGVLYSVRPEARGAQLFV+RS+PEML+ELFRIEVPEIGEE+IEIKAAARDPGSRA Sbjct: 181 PGDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRA 240 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KIAVKTNDKRIDPVGACVGMRGARVQAVS+ELGGERIDI+LWDDNPAQFVINAMAPADV Sbjct: 241 KIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVV 300 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQL-------SGWELNVMTVDDLQAK 347 SIVVDED TMDIAVE+ NLAQAIGRNGQNVRLASQL WELNVMTV+DLQAK Sbjct: 301 SIVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAK 360 Query: 348 HQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALR 407 HQAEAHAAID FTK+LDIDE+FATVLVEEGFS+LEELAYVP+KELL IEGLDE TVEALR Sbjct: 361 HQAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALR 420 Query: 408 ERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDL 467 ERAK AL T+A A EESLGD +PA+DLL+L G+ R+LAFKLAA GVCTLEDLAEQG+DDL Sbjct: 421 ERAKAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDL 480 Query: 468 ADIEGLTDEKAGALIMAARNICWFGDE 494 DIE L DE+AG LIMAARNICWFGD+ Sbjct: 481 TDIEELNDEQAGELIMAARNICWFGDD 507 >UniRef50_Q1LSK7 Transcription termination factor NusA n=7 Tax=Gammaproteobacteria RepID=Q1LSK7_BAUCH Length = 495 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/494 (74%), Positives = 438/494 (88%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKEILAVVEAVSNEK++PREKIFEALE+ALATATKKKYEQEI+VR+ IDRKSGDF+T R Sbjct: 1 MNKEILAVVEAVSNEKSVPREKIFEALETALATATKKKYEQEIEVRINIDRKSGDFETLR 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 RWL+V++VTQPT+EITLEAA++++ + +G Y+ED IESVTFDRITTQTAKQVIVQKVR Sbjct: 61 RWLIVEKVTQPTREITLEAAKFDNPNAQVGGYIEDIIESVTFDRITTQTAKQVIVQKVRA 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AERAM+++QFR+++G+I+ G+VKKV+RDN+S+D+GNNAEA+I REDMLPRENFR GDR+R Sbjct: 121 AERAMIIEQFRKYKGQILIGLVKKVHRDNMSIDIGNNAEAIINREDMLPRENFRIGDRIR 180 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 GVLYS+RPE RG QLFV+R+ PEML+ELFRIEVPEIGEE+IEIKA ARDPGSRAKIAVKT Sbjct: 181 GVLYSIRPEVRGTQLFVSRTCPEMLVELFRIEVPEIGEELIEIKAVARDPGSRAKIAVKT 240 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 NDKRIDPVGACVGMRGARVQAVS+ELGGERIDIVLWDDNP QFVINAMAPADVASI+VDE Sbjct: 241 NDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPVQFVINAMAPADVASIIVDE 300 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 D MDIAVE NLAQAIGRNGQNVRLASQLSGWELNV+T+ ++Q KH+AE AAI+ FT Sbjct: 301 DTQIMDIAVEESNLAQAIGRNGQNVRLASQLSGWELNVITLSEMQEKHRAETSAAIEIFT 360 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420 K L+I+E+ AT+L+E G S+LEELAYVP+KELL I+ LDE VE LR++AK A+ + Sbjct: 361 KTLNINEELATILIEGGISSLEELAYVPIKELLVIDKLDENIVEELRKKAKQAITQLTIT 420 Query: 421 QEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGA 480 +E+ KP DLL L ++R +AFKLAARG+CTLE+LAEQGIDDL +IEGL+ E+AG Sbjct: 421 MQENNLAKKPDQDLLELSKLERHIAFKLAARGICTLENLAEQGIDDLLNIEGLSSEQAGE 480 Query: 481 LIMAARNICWFGDE 494 LIMAAR ICWFGD+ Sbjct: 481 LIMAARKICWFGDQ 494 >UniRef50_Q3J9B5 NusA antitermination factor n=3 Tax=Gammaproteobacteria RepID=Q3J9B5_NITOC Length = 506 Score = 566 bits (1460), Expect = e-160, Method: Compositional matrix adjust. Identities = 284/497 (57%), Positives = 378/497 (76%), Gaps = 4/497 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKEIL VV+AVSNEK + +E IF+A+E+ALA AT+K+Y+++I V+V IDR +GD+ +FR Sbjct: 1 MNKEILMVVDAVSNEKGVNKEVIFQAIEAALAMATRKRYQEDIAVQVVIDRTTGDYQSFR 60 Query: 61 RWLVVD---EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 W V++ E+ P +++ L A D + + +V++ +ES+ F RI QTAKQVIVQK Sbjct: 61 SWEVIEDEAELDAPERQMHLSEACKRDPNAEVSGFVKEPMESIAFGRIAAQTAKQVIVQK 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 VREAERA VV +R E++ GVVK+++R NI LDLG+NAE ++ +E+M+PRE RPGD Sbjct: 121 VREAERAKVVAAYRGRIKEMVMGVVKRMDRGNIILDLGDNAEGIVPQEEMIPREAVRPGD 180 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 R+RG L VR E RG QL ++R+ PE+LIELF++EVPEI E IE+K AARDPG RAKIA Sbjct: 181 RLRGYLKEVRAEGRGPQLVISRTAPELLIELFKLEVPEINENRIEVKGAARDPGLRAKIA 240 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 VKTN+ RIDPVGACVGMRG+RVQAVS EL GER+DIVLWD++PA+FVINAMAPA+VASIV Sbjct: 241 VKTNETRIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPARFVINAMAPAEVASIV 300 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357 VDE++H+MD+AV GNL+QAIGR GQN+RLASQL+GWELNVMT + + K ++EA + Sbjct: 301 VDEERHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQ 360 Query: 358 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATI 417 F + LD+DE+ A +LV EGFS++EE+AYVP +E+L IE D V+ LR RA++ L T Sbjct: 361 MFMEQLDVDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTR 420 Query: 418 AQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEK 477 A A EE++ + +LL++E +D LA LA++G+ T E+LAEQ +D+L +IEG+ EK Sbjct: 421 AIANEETIETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELMEIEGMNREK 480 Query: 478 AGALIMAARNICWFGDE 494 A LIMAAR WF E Sbjct: 481 AARLIMAARE-SWFVSE 496 >UniRef50_Q83BS0 Transcription elongation protein nusA n=504 Tax=root RepID=NUSA_COXBU Length = 503 Score = 561 bits (1445), Expect = e-158, Method: Compositional matrix adjust. Identities = 291/500 (58%), Positives = 376/500 (75%), Gaps = 8/500 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQE-IDVRVQIDRKSGDFDTF 59 MNK+IL +V+++SNE+ + +E IFEA+E+ALA T K+YE++ + +RV ID+K+GD+++F Sbjct: 1 MNKDILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESF 60 Query: 60 RRWLVVDEVTQ----PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 R W VV++ + P +E+TL+ AR D L +GD +E+ +ESV F RI Q AKQVIV Sbjct: 61 RCWTVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAVQQAKQVIV 120 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRP 175 QKVREAERA ++ Q+ + GE++ GVVK+V R++I LD+G NAEA++LRE+M+PRE FR Sbjct: 121 QKVREAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRI 180 Query: 176 GDRVRGVLYSV-RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 DR+R LYSV + + RG QL V+R++PE L+ELF+IEVPEIGEEVIEIK AARDPGSRA Sbjct: 181 NDRLRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRA 240 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KIAVKTND RIDP+GACVGMRG+RVQAVS ELGGERIDIVLWDDNPAQ VINAMAPA+VA Sbjct: 241 KIAVKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVA 300 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 354 SIVVDED HTMDIAV L+QAIGR+GQNVRLAS+L+GW LNVM+ ++ KH+ EA Sbjct: 301 SIVVDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEAGK 360 Query: 355 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 F + LD+DE+ A LV+ GF LEE+AYVP +EL +EG DE L+ RA + L Sbjct: 361 IKTAFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVL 420 Query: 415 ATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLT 474 T A++E L + KPA+DLL L G+ +LA +L V T +DLAE+ + DL +I + Sbjct: 421 LTQEIAKQE-LDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDLKEIIEID 479 Query: 475 DEKAGALIMAARNICWFGDE 494 DE A LIMAAR WF +E Sbjct: 480 DEAAANLIMAARA-HWFAEE 498 >UniRef50_A4G7S8 Transcription elongation protein nusA (N utilization substance protein A) (L factor) n=52 Tax=Proteobacteria RepID=A4G7S8_HERAR Length = 519 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 238/485 (49%), Positives = 339/485 (69%), Gaps = 6/485 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M++EIL +V+A++ EK + + +F ALE ALA ATKK+YE ++D+RV IDR +G+F++FR Sbjct: 1 MSREILQLVDALAREKNVDPDIVFGALEHALAQATKKRYEGDVDIRVSIDRDTGEFESFR 60 Query: 61 RWLVVDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 RW VV + + P +EI A+ + + + D++E+ IESV F R Q KQV++Q+ Sbjct: 61 RWHVVPDDAGLQLPDQEILHFEAKEQIGDIEVDDHIEEPIESVEFGRRFAQDTKQVVLQR 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 +R+AER ++ F E ++TG +K++ R + ++ G EA + R+ +P+EN R GD Sbjct: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGR-IEARLPRDQTIPKENLRIGD 179 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 RVR + + ARG Q+ ++R+ PE +++LF +EVPEI + ++EIK+AARD G RAKIA Sbjct: 180 RVRAYILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIA 239 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V T+DKRIDP+G CVGMRG+RVQAV+ ELGGER+DIVLW ++PAQFVI A+APA+V+SIV Sbjct: 240 VFTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIV 299 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357 VDE+KH MD+ V+ NLA AIGR GQNVRLAS+L+GW++N+MT ++ K Q E A Sbjct: 300 VDEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAATRI 359 Query: 358 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATI 417 F + LD+D++ A +LV+EGF++LEE+AYVP+ E+L+IE DE TV LR RA++AL T Sbjct: 360 LFMEKLDVDQEVADILVDEGFASLEEIAYVPIGEMLDIESFDEDTVNELRNRARDALVTE 419 Query: 418 AQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEK 477 A A EE + A L NLEG+DR +A KL GV TL+ A D+ I L ++ Sbjct: 420 AIASEEGMEGMDEA--LANLEGMDRIVAGKLGLAGVKTLDAFAGLAYDEFGAILALPTDR 477 Query: 478 AGALI 482 A LI Sbjct: 478 ARHLI 482 >UniRef50_C4GHM6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHM6_9NEIS Length = 500 Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust. Identities = 227/500 (45%), Positives = 342/500 (68%), Gaps = 9/500 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQE-IDVRVQIDRKSGDFDTF 59 M+KEIL + EA+++EK + E +FEALE AL A KKK ++E +D+ ++IDR++GD+ T Sbjct: 1 MSKEILLLAEALASEKNVSNEIVFEALEVALGIAAKKKADREQMDLEIRIDRETGDYKTI 60 Query: 60 RRWLVVDEV--TQPTKEITLEAARYEDE--SLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 R+WL+V+++ T P E T+E + E +++GDY E+++ + F R QTAKQ+I+ Sbjct: 61 RKWLIVEDLDYTYPELEKTIEQIQEEQPEIQISVGDYYEEELPNEAFGRQAAQTAKQIIL 120 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRP 175 Q++R+AER +++ F E I+TG VK++ R I ++L +A+I RE MLPREN+R Sbjct: 121 QRIRDAEREQILNHFLETHENIVTGTVKRMERHGIVVELAPKLDALIPREQMLPRENYRG 180 Query: 176 GDRVRGVLYSVRPEARG-AQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 GDR+R + + + G Q+ ++R+ P+ + ELF EVPEI + ++EIK ARDPG RA Sbjct: 181 GDRIRALFWKLEEFNGGRKQVLLSRTAPDFVRELFAQEVPEIADGLLEIKEVARDPGQRA 240 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KIAV D+RIDP G C+G+RG+RV AVS E+GGERID+VLW D+ AQFVINA++PA V+ Sbjct: 241 KIAVLARDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDTAQFVINALSPAQVS 300 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 354 IV+D++ +++D+ V LA AIGR GQNVRLA++L+G +LN+MT+ + + ++ AE+ A Sbjct: 301 RIVIDDELNSVDVIVAEDQLALAIGRGGQNVRLAAELTGLQLNIMTLQEAEERNAAESAA 360 Query: 355 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 A + F + L++ E+ A LV EGF ++EE+AYVP ELLE+EG D E+LR +A+ + Sbjct: 361 ARNLFVEQLEVSEEIADALVNEGFESVEEVAYVPASELLEVEGFDAELAESLRAKAREVV 420 Query: 415 ATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLT 474 A+ E L N+ +DL L+GVD D+ LA + + +DLAE I +L +I G++ Sbjct: 421 LKAAEEAEAKL--NEIDEDLRTLDGVDEDMLRDLAEANITSRDDLAELSIAELIEITGVS 478 Query: 475 DEKAGALIMAARNICWFGDE 494 E+A I+AAR WF +E Sbjct: 479 HEEAEKAILAAR-AHWFAEE 497 >UniRef50_A5EWZ0 Transcription termination factor n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWZ0_DICNV Length = 495 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 243/497 (48%), Positives = 321/497 (64%), Gaps = 9/497 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKY-EQEIDVRVQIDRKSGDFDTF 59 M+KE+LA+VEAV+NEK + R IFEALE+ALA AT+K++ ++EI+ RV IDRKSG+++TF Sbjct: 1 MSKELLAIVEAVANEKDVDRNVIFEALEAALAAATRKRHGDKEIETRVSIDRKSGEYETF 60 Query: 60 RRWLVVD-----EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 R W +VD E T T+ + D L GD E++IE+ F RI+ Q AKQ+I Sbjct: 61 RVWKIVDDDAILENTDIEIRETVAHIDFPDADLVAGDIYEEKIENEPFGRISAQMAKQII 120 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 174 +QK+REAER + QF E EG ++ G+V++ R N +DLG E ILR DM+PRE R Sbjct: 121 IQKLREAEREKIYQQFIEQEGTLVHGIVRRHERGNAIVDLGG-VEGTILRNDMIPREPLR 179 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 GDR+ G L V E RG QL ++R PE+LI+LF+ EVPEI +IEI AARDPG RA Sbjct: 180 SGDRILGYLEKVNRELRGPQLQISRIAPELLIQLFQKEVPEISSGMIEIMGAARDPGLRA 239 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KI+V+T D RIDPVGACVG+RG+RVQ V EL GERIDIVLWDD+ +V AMAPA ++ Sbjct: 240 KISVRTFDPRIDPVGACVGIRGSRVQGVVNELAGERIDIVLWDDDAETYVRKAMAPAVIS 299 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 354 V+E T+DIAV L QA+GR GQNVRLAS+L+GW +NV++ + K QA A Sbjct: 300 DTCVNEATKTIDIAVPEEKLPQAVGRGGQNVRLASELTGWTINVLSESEFAEKIQATQSA 359 Query: 355 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 + + LD+DE AT L+ G +T E +AY ELL I+ D V+ L ERA N + Sbjct: 360 QEQSLSTILDVDETVATQLIAHGITTPEAVAYTGRDELLTIDAFDAELVDDLLERAANYV 419 Query: 415 ATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLT 474 + +EE + + + +EGVD LA KL A G+ T EDLAE +++L I T Sbjct: 420 -MVEAFKEEDTPEEEMQTSVSVMEGVDSVLAAKLQAAGIHTQEDLAELSVEELITIGNTT 478 Query: 475 DEKAGALIMAARNICWF 491 +A ALI+ AR WF Sbjct: 479 QNEAAALILKARE-PWF 494 >UniRef50_A0LE21 NusA antitermination factor n=14 Tax=Bacteria RepID=A0LE21_MAGSM Length = 506 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 224/504 (44%), Positives = 323/504 (64%), Gaps = 12/504 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M EIL V + V+ EK + R+ + EA+ESA+ TA++KKY +++ + D KSG+F + Sbjct: 1 MTVEILQVADQVAREKGIDRKVVIEAMESAIQTASRKKYGANKNIQARFDPKSGEFQLNQ 60 Query: 61 RWLVVDEVTQPTK-------EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV 113 VVD + Q I+LE A + GD++ +Q+ + F RI QTAKQV Sbjct: 61 LREVVD-LDQDEDLDFDEDIHISLEKALTMNPEAVPGDFIAEQLPPMEFGRIAAQTAKQV 119 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENF 173 IVQKVR+AER + +++ + +GE++ G+VK+V R+NI +DLG + + E+ LPRE++ Sbjct: 120 IVQKVRDAERERIFEEYADRQGEMVNGLVKRVERNNIHVDLGRTS-GFLPHEEQLPREHY 178 Query: 174 RPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSR 233 RPGDR+R + VR RG Q+ ++R+ P+M++ LF +EVPEI + ++EIKA ARDPG R Sbjct: 179 RPGDRIRAFIKEVREVTRGPQIILSRTHPQMVVRLFEMEVPEIYDGIVEIKAVARDPGHR 238 Query: 234 AKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADV 293 +KIAV++ND +DPVGACVGMRG+RVQ+V TEL GERIDI+ W +PA FV NA+APA+V Sbjct: 239 SKIAVRSNDAHVDPVGACVGMRGSRVQSVVTELQGERIDIIEWSHDPAVFVCNALAPAEV 298 Query: 294 ASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAH 353 +VVDE+ + + V+ L+ AIGR GQNVRLAS+L+GW ++++T + + + Sbjct: 299 VKVVVDEEDRNIKVVVDETALSLAIGRRGQNVRLASELTGWRIDIITEQEERNLREEMFG 358 Query: 354 AAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA 413 TF K LD+ E+ A VLV EGF++ EE+AYVP+ EL IEG DE + LR RA++ Sbjct: 359 ELQQTFMKDLDLGEEVAAVLVNEGFTSAEEVAYVPLNELTSIEGFDEEIAQELRNRARDT 418 Query: 414 LATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADI-EG 472 L A EE + + L L + D LA + V TL+DLA+ D+L ++ +G Sbjct: 419 LLQQALQTEERKAELHIDERLAQLGLLTDDALIALAEKNVNTLDDLADLATDELVEMFDG 478 Query: 473 -LTDEKAGALIMAARNIC-WFGDE 494 LT E A LI+ AR WF DE Sbjct: 479 ELTTEDAETLILGARRAAGWFDDE 502 >UniRef50_Q0C5Z7 Transcription termination factor NusA n=110 Tax=cellular organisms RepID=Q0C5Z7_HYPNA Length = 592 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 207/466 (44%), Positives = 303/466 (65%), Gaps = 3/466 (0%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 EIL + +AV+ EK++ + + EA++ A+ A K KY QE D+R +ID +G+ +R Sbjct: 12 EILQIAKAVAEEKSIDQRIVIEAMQEAIEKAAKAKYGQEHDIRAKIDPATGEQTLWRIQT 71 Query: 64 VVDEVT--QPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VVD+ T K++ L A+ D +L G +++++ F R+ QTAKQVI QKVR+A Sbjct: 72 VVDDETFEDEAKQLRLSEAKRIDATLVAGSELKEELPPFDFGRVAAQTAKQVITQKVRDA 131 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER +++++ GEI++G+VK+V ++ +DLG AE +I R D +PRENF+P DRVR Sbjct: 132 ERERQYNEYKDRVGEIVSGIVKRVEYGHVIVDLGR-AEGIIRRNDGIPRENFQPNDRVRA 190 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 LY V E +G Q+F++R+ P+ + +LF EVPE+ E VI+IKA ARDPGSRAKI V +N Sbjct: 191 YLYKVSREVKGPQIFLSRAAPDFMRKLFAQEVPEVYEGVIQIKACARDPGSRAKIGVISN 250 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D IDPVGACVGMRGARVQAV EL GE+IDI+ W + A F++N + PA+V+ +V+DED Sbjct: 251 DSSIDPVGACVGMRGARVQAVVGELSGEKIDIIPWSFDAATFIVNGLQPAEVSKVVLDED 310 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 + +++ V AIGR GQNVRLASQL+GW+++++T ++Q E D F K Sbjct: 311 ERRVEVVVADDQFPLAIGRRGQNVRLASQLTGWQIDLITESADSERYQKEFQERTDLFMK 370 Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 LD DE A +L EGF ++EE+A+V ++ + IEG D+ E L+ERA+ L +A Sbjct: 371 ALDADETLAQLLASEGFESVEEIAFVAPEDFITIEGFDKDVAEELQERAREYLDRVATEN 430 Query: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDL 467 + + AD+++ LEGV A KL +GV T+ED+A DD+ Sbjct: 431 DAKRRELGVADEVMELEGVTPSFAVKLGEQGVKTVEDVAGLVPDDI 476 >UniRef50_D1KAN2 Transcription elongation factor n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KAN2_9GAMM Length = 390 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/396 (50%), Positives = 279/396 (70%), Gaps = 8/396 (2%) Query: 97 IESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGN 156 +E+ F RI Q KQVI+QKVREAER ++VD + + GE+I VK+V+R N+ +D+G Sbjct: 1 METEEFGRIAAQIFKQVIIQKVREAEREVIVDDYTKRVGEVIIVTVKRVDRGNVYVDMGG 60 Query: 157 NAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEI 216 + +I + D++P E+ R DR+R + V+ RGAQ+F++R+ PEM+I+LF +EVPEI Sbjct: 61 -VDGMISKFDLIPNESTRKNDRLRAYIKDVKSTPRGAQIFLSRTAPEMMIQLFEMEVPEI 119 Query: 217 GEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLW 276 E VIEI ARDPG R+K+AVK+ DKR+DP+G+C+GMRG+RVQAVS EL GER+DI+LW Sbjct: 120 SEGVIEIMGGARDPGLRSKLAVKSKDKRLDPIGSCIGMRGSRVQAVSNELNGERVDIILW 179 Query: 277 DDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWEL 336 D++PAQFVINAMAPA+V+SIVVDEDK++MDIAVE LA AIGR GQN++LAS+L+GW+L Sbjct: 180 DEDPAQFVINAMAPAEVSSIVVDEDKNSMDIAVEDDQLALAIGRGGQNIKLASRLTGWKL 239 Query: 337 NVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIE 396 NVM++++ + K E + L +D + A VL+EEGF +++E+A L IE Sbjct: 240 NVMSINESEDKQAEENQKVSGKLAEQLGVDSEVAGVLIEEGFGSIDEVADADADALESIE 299 Query: 397 GLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTL 456 D VE L+ERA + A + QA LGD + ++ L+ +EG+D DL L + T+ Sbjct: 300 EFDVSMVEELQERASD--AQLVQA----LGDAESSEVLMGVEGMDEDLVQALIEAEIATV 353 Query: 457 EDLAEQGIDDLADIEGLTDEKAGALIMAAR-NICWF 491 +DLAE ID+L DI+ + EKA ++IM AR N WF Sbjct: 354 DDLAELSIDELLDIQEMDKEKASSMIMTARENEGWF 389 >UniRef50_A0Q8F4 Transcription elongation factor n=17 Tax=Francisella RepID=A0Q8F4_FRATN Length = 489 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 206/499 (41%), Positives = 333/499 (66%), Gaps = 19/499 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE+L V+E V+NEK + ++ +FEA+E ALA TKK+ ++ +++ V+IDR +GDF R Sbjct: 1 MSKELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADR 60 Query: 61 RWLVVDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 W +V E + +KE+ + A+ + ++ GD + + +E + RI AKQ++++K Sbjct: 61 VWHIVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKK 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 ++ ER ++ G+I+ G +K+ + + +DLGNNAE ++ ++D++ RE +R GD Sbjct: 121 IKNFEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGD 180 Query: 178 RVRGVLYSVRPEARGA--QLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 ++R + +V + G + ++RS ML LF++EVPE+ EE+I I R+PG R+K Sbjct: 181 KIRACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSK 240 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 + VK+ND+RIDP GACVG+RG+R+ ++ +EL GE++D++LW+++ Q+ IN+++P D A Sbjct: 241 VTVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAAD 300 Query: 296 IV---VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 352 I+ VDE+ ++MDI V+ +L++AIG+NG NVRLAS L GW++NV++ A+ + + Sbjct: 301 ILEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLS----DAEQEEKQ 356 Query: 353 HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 412 + ++ F + LDID DFA VL+EEG TLE+LAY+ ELLEIEG DE V+ L+ERAK Sbjct: 357 MSIVEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKA 416 Query: 413 ALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEG 472 + + ++LG KPA DLL+++G+ DLA +LA + T+EDLAE +D+L DI Sbjct: 417 VILS------QALGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDIVD 470 Query: 473 LTDEKAGALIMAARNICWF 491 + +E+A LIM AR WF Sbjct: 471 MDEEQATNLIMQAR-APWF 488 >UniRef50_Q1V1E6 Transcription termination factor n=3 Tax=Candidatus Pelagibacter RepID=Q1V1E6_PELUB Length = 530 Score = 358 bits (918), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 207/507 (40%), Positives = 314/507 (61%), Gaps = 21/507 (4%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+L + EAV+ EK++ +E I +++E+ +A A K K+ Q+ +++V IDR+SGD FR+ + Sbjct: 23 ELLRIAEAVALEKSIDKELIIDSMETGIAKAAKSKFGQDNEIKVLIDRESGDIGIFRKLI 82 Query: 64 VVDEVTQPTKEITLEAARYEDE---SLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV++ EI L+ A +E +GD + + S F RI QTAKQVI VRE Sbjct: 83 VVEKPENTNTEINLQDAIILNEVNKDKKIGDEILQPLPSFDFGRIAAQTAKQVISFNVRE 142 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER + F + + I++G+VK++ N+ +DLG EA+I + +M+PREN + GDRV+ Sbjct: 143 AERERQYNDFIDKKDSILSGIVKRLEFGNVIVDLGR-TEAIIQKNEMIPRENIKAGDRVK 201 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 Y V+ EARG Q+F++R+ P+ + +LF EVPEI + +IEIK++ARDPGSRAKI VK Sbjct: 202 AYCYDVKREARGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSARDPGSRAKICVKA 261 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D +DPVGACVGMRG+RVQAV EL GE+IDIV W ++PA V NA++PA+V + VD Sbjct: 262 VDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAIVVSNALSPAEVQRVNVDS 321 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 +D+ + NL++AIGR GQNVRLA++L +E+N+MT + + Q+E + F Sbjct: 322 VAKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQSEFKEKTENFV 381 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420 K L++DE +LV EGFS++ ++ + L++IEG++E T +AL ERAK + Sbjct: 382 KNLELDETLGQLLVAEGFSSISDIKDSSPENLMKIEGIEEDTAKALIERAKEFYQKDQED 441 Query: 421 QEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLA-----------D 469 + + D DDL+N +G+ + L + + LED A+ D+L Sbjct: 442 ITQRIKDLGLQDDLINHKGLTPGMLVTLGEQKILKLEDFADLASDELTGGYDVVKGERIK 501 Query: 470 IEG------LTDEKAGALIMAARNICW 490 I+G L+ +A LIM+AR+I + Sbjct: 502 IQGYLEDFALSKTEADELIMSARSIIY 528 >UniRef50_Q9ZCZ7 Transcription elongation protein nusA n=20 Tax=Alphaproteobacteria RepID=NUSA_RICPR Length = 503 Score = 347 bits (889), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 183/492 (37%), Positives = 312/492 (63%), Gaps = 7/492 (1%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N EIL ++++V+ EK + +E + +E A+ A +KKY E +++ QI+RK+G+ + R Sbjct: 6 NIEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEINLLRI 65 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 +V++V +I+LE A ++ +GD + + + + R++ Q AKQVI Q+V EA Sbjct: 66 LKIVEDVEDYLTQISLEDALVKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQRVIEA 125 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER F++ +G+II G+VK++ +I +DL + AEA+I ++ ++ E+F+P DR++ Sbjct: 126 EREKQYHDFKDRKGDIINGIVKRIEYGDIIVDL-SRAEAIIKKDQLIKGEHFKPNDRIKA 184 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + VR E +G Q+F++R +ML++LF++EVPEI E++I+IK+ ARDPGS+AKIAV + Sbjct: 185 YVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSVARDPGSKAKIAVFAS 244 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINA---MAPADVASIVV 298 D IDPVG+CVG+RG RV+AV+ EL GE+IDIVLW ++ AQF++N+ +AP+++ I++ Sbjct: 245 DSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNSLIPLAPSEITKILI 304 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 DED H +++ V + + AIGR GQNVRLAS+L+GW +++MT + + E + + Sbjct: 305 DEDSHKVEVVVSQEHQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFSTSTEL 364 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418 F + LD++E +L GF+++E++A + L IEG +E ++ RA + + Sbjct: 365 FMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAIHYVDLKN 424 Query: 419 QAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGID---DLADIEGLTD 475 + + L + +L+++ + +L K A G+ T+EDL E ++ +LA +TD Sbjct: 425 EKIIKKLEELGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNEFKNLAPNSNITD 484 Query: 476 EKAGALIMAARN 487 E LI AR+ Sbjct: 485 ENIKLLIKTARH 496 >UniRef50_B8FCY4 NusA antitermination factor n=3 Tax=Desulfobacterales RepID=B8FCY4_DESAA Length = 488 Score = 327 bits (837), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 167/417 (40%), Positives = 269/417 (64%), Gaps = 5/417 (1%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDE 67 V++ VS +K + + + LE AL A +KK D+ VQ + ++G+ + F+ VV+E Sbjct: 9 VIDQVSRDKGIDKNVLIATLEEALQAAARKKLGPRADIEVQYNEEAGELEVFQFREVVEE 68 Query: 68 VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVV 127 VT+P E+++E R D LGD + ++++ TF RI Q+AKQVI+QK+++AER V Sbjct: 69 VTEPDLEMSMEDGRELDPDCELGDSLGSKMDTATFGRIAAQSAKQVIIQKLKDAERDAVY 128 Query: 128 DQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVR 187 F + +GEII G++++++R +I ++LG E V+ + +PRE + GDR+R + V Sbjct: 129 SSFMDRKGEIINGIMQRMDRGDIIVNLGQT-EGVLPSREQVPRETYHRGDRIRAFILDVV 187 Query: 188 PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDP 247 E RG Q+ ++R+ P L LF++EVPEIGE V+ + A AR+PG RAKIAV ++D ID Sbjct: 188 LEGRGPQIILSRTHPNFLTSLFKMEVPEIGEGVVSVMAGAREPGVRAKIAVASSDSDIDA 247 Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDI 307 VGACVGM+G+RVQ V EL GE+IDIV W + A+FV NA+APA ++ +++DE+ H M++ Sbjct: 248 VGACVGMKGSRVQNVVHELRGEKIDIVPWHADSAKFVCNALAPAQISRVIIDEENHAMEV 307 Query: 308 AVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDE 367 V L+ AIG+ GQNVRLAS+L+GW L+V + + ++ ++ + ++DE Sbjct: 308 IVPDEFLSVAIGKKGQNVRLASKLTGWHLDVKS----ETRYSRTMQDGYNSLMELAELDE 363 Query: 368 DFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEES 424 + A L E+GF ++EEL+ +L++I+G+D + L A+ A+A++A ++ S Sbjct: 364 NIADALYEKGFYSVEELSAADPDDLVQIKGIDLTLADTLIIAAQEAMASMAMEKQAS 420 >UniRef50_Q28WF5 NusA antitermination factor n=74 Tax=Bacteria RepID=Q28WF5_JANSC Length = 590 Score = 327 bits (837), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 176/372 (47%), Positives = 247/372 (66%), Gaps = 1/372 (0%) Query: 89 LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD 148 +GD + D++ V RI Q+AKQVI+QKVREAER +F++ GEII GVVK+ Sbjct: 148 IGDMIADEVPPVEMGRIAAQSAKQVILQKVREAERDRQFAEFKDRVGEIINGVVKREEYG 207 Query: 149 NISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIEL 208 N+ +D+G+ EA + R + + RE +R GDR+R + VR E RG Q+F++R+ PE + EL Sbjct: 208 NVIVDVGS-GEAQLRRNEKIGREAYRNGDRIRCYIKDVRRENRGHQIFLSRTAPEFMREL 266 Query: 209 FRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGG 268 F++EVPEI + +IEIKA ARDPGSRAKIAV + D IDPVGACVGMRG+RVQAV EL G Sbjct: 267 FKMEVPEIYDGIIEIKAVARDPGSRAKIAVISYDNGIDPVGACVGMRGSRVQAVVNELQG 326 Query: 269 ERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLA 328 E+IDI+ W+++ F++NA+ PA+V+ +V+DED +++ V L+ AIGR GQNVRLA Sbjct: 327 EKIDIIPWNEDAPTFLVNALQPAEVSKVVLDEDAGKIEVVVPDEQLSLAIGRRGQNVRLA 386 Query: 329 SQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVP 388 SQL+ +++++T ++ + QAE F LD+DE FA +LV EGF+ LEE+AYV Sbjct: 387 SQLTNLDIDILTEEEESKRRQAEFEERTKLFMDTLDLDEFFAQLLVSEGFTALEEVAYVE 446 Query: 389 MKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKL 448 ELL I+G+DE T E L+ RA++ L + E + + L+ EG+ + L Sbjct: 447 ADELLVIDGVDEGTAEELQARARDYLEAQNKLALEKAKEMGVEESLIAFEGLTPQMLVAL 506 Query: 449 AARGVCTLEDLA 460 GV TLED A Sbjct: 507 GEDGVKTLEDFA 518 >UniRef50_A8ZZ66 NusA antitermination factor n=3 Tax=Deltaproteobacteria RepID=A8ZZ66_DESOH Length = 475 Score = 323 bits (829), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 169/404 (41%), Positives = 259/404 (64%), Gaps = 5/404 (1%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 +++ VVE VS +K + R+ + +ALE A+ +A +K+Y ID+ D +G+ + F+ Sbjct: 4 QDVKRVVEQVSRDKGIDRDTLVKALEEAIKSAARKRYGAAIDIETMYDEDTGEIEIFQFK 63 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 VV+ V P +IT R D LGD + ++++ +F RI Q+AKQVI+QK+REAE Sbjct: 64 EVVETVQDPDLQITFVEGRALDPECELGDSLGVKMDTQSFGRIAAQSAKQVIIQKMREAE 123 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 R+ V F E EGEII G+V ++ R N+ +++G AEA++ + +P E +R GDRVR Sbjct: 124 RSAVYKNFVEKEGEIINGIVSRMERGNVIVNIGE-AEAILNSREQIPGEGYRRGDRVRAN 182 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND 242 + V E G Q+ ++R+ P+ ++ LF+ EVPEI E +I IKA AR+ G R KIAV +ND Sbjct: 183 VMKVLEETAGPQIILSRAHPDFVVNLFKTEVPEISEGIITIKAIAREAGGRTKIAVVSND 242 Query: 243 KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK 302 IDPVGACVG+RG R+Q V EL GE+IDIV W+ +PA+FV NA++PA++A +++DED Sbjct: 243 MDIDPVGACVGVRGNRIQNVVKELKGEKIDIVPWNPDPAKFVCNALSPAEIARVIIDEDN 302 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKY 362 M+I V + + AIGR GQNVRLAS+L+GW L+V + ++ + DT + Sbjct: 303 AAMEIIVPDESHSLAIGRRGQNVRLASKLTGWHLDVQS----ESIYTQAMERGYDTLLQI 358 Query: 363 LDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEAL 406 +D A L E GF + ++++ + +L+E+EG+DE + +AL Sbjct: 359 PGVDGSLANALCEVGFFSADDISGAAVDDLIELEGIDEASAKAL 402 >UniRef50_C9KKC1 Transcription termination factor NusA n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKC1_9FIRM Length = 378 Score = 291 bits (745), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 140/338 (41%), Positives = 223/338 (65%), Gaps = 1/338 (0%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 +E L ++ + EK + E +FEA+E+AL +A K+ + +VRV + R++G + + Sbjct: 13 QEFLTTLKELGKEKGIDEEVLFEAIEAALISAYKRNFGSAQNVRVTLSRETGHYHVYAIK 72 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 VV++ EI+L AR +GD +E ++ F RI QTAKQV+VQ++REAE Sbjct: 73 TVVEDPEDEITEISLAQARTIKPDYEVGDVIEIEVTPANFGRIAAQTAKQVVVQRIREAE 132 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 R ++ ++F EG+I+TG+V++V N+ +DLG EAV+ + +P E + GDR++ Sbjct: 133 RGIIYEEFMSREGDILTGLVERVENHNVYIDLGKT-EAVLTPAEQIPTETYAHGDRIKAY 191 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND 242 + V+ +G Q+ V+R+ P +L LF +EVPEI E ++EIK+ AR+PG+R+KIAV + D Sbjct: 192 VVEVKKTNKGPQIVVSRTHPGLLKRLFELEVPEIQEGIVEIKSVAREPGNRSKIAVYSKD 251 Query: 243 KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK 302 + +DPVG+CVG RG RVQ++ ELG E+IDIV W DNPA+F+ NA++PA V S+ V+E + Sbjct: 252 ENVDPVGSCVGHRGLRVQSIVDELGSEKIDIVKWSDNPAKFIANALSPAKVVSVAVNETE 311 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 + V L+ AIG+ GQN RLA++L+GW++++ + Sbjct: 312 KVSRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKS 349 >UniRef50_Q1DAM8 Transcription termination factor NusA n=11 Tax=Bacteria RepID=Q1DAM8_MYXXD Length = 566 Score = 291 bits (744), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 183/525 (34%), Positives = 296/525 (56%), Gaps = 51/525 (9%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDE 67 V++ V+ +K + R + LE A+ TA KK + Q+ ++ + D G + F+ VV+E Sbjct: 15 VLDQVAKDKGIDRAVLIATLEDAMKTAAKKHFGQDRELEAKYDPDKGVVELFQAITVVEE 74 Query: 68 VTQPTK---EITLEAAR-----------------YEDESL--------NLGDYVEDQIES 99 + P + +I+L A Y DE GD + + Sbjct: 75 IVDPVQAVNQISLVEAHKKGMEVEPGDELVFQIFYRDEDAAEAKAQDDQYGDILRLKTFR 134 Query: 100 VTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAE 159 F RI QTAKQVI+Q+ R+AER V +++R+ + EI+TG+ ++ R NI +DLG AE Sbjct: 135 RGFGRIAAQTAKQVILQRTRDAERENVFNEYRDRKNEIVTGIARRFERGNIIVDLGR-AE 193 Query: 160 AVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEE 219 AV+ + +PRE +RPGDRV+ + V E++G Q+ ++R+ +L +LF +EVPEI E Sbjct: 194 AVLPVREQVPRETYRPGDRVQAYVLDVLRESKGPQIVLSRASVNLLTKLFEMEVPEIAEG 253 Query: 220 VIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDN 279 ++ I+AAAR+PG RAKIAV + D +DPVGACVGM+G+RVQAV EL GE+IDIV +D++ Sbjct: 254 IVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFDED 313 Query: 280 PAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 PA+FV +A+APA+V+ +++DE H M++ V L+ AIGR GQNVRLA+QL+GW+L++ Sbjct: 314 PARFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLDIN 373 Query: 340 TVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLD 399 + +++ + A + ++E L GF ++A + L ++ G+D Sbjct: 374 S----ESRVRELREFANRSLGSLPGVNEMLVETLYAHGFRQARDIAEANAELLAQLPGID 429 Query: 400 EPTVEALRERAKNAL----------------ATIAQAQEESLGDNKPADDLLNLEGVDRD 443 + +++E A+ + A IA+A+ ++P + + + GV Sbjct: 430 PARIPSMQEAARTRMVEDQAELSRMDYEREQARIAEARRHPDELSQP-ERMARVRGVGEK 488 Query: 444 LAFKLAARGVCTLEDLA-EQGIDDLADIEGLTDEKAGALIMAARN 487 +L G ++ED+A E+ + L D+ G+ +KA L AA N Sbjct: 489 TIEQLILAGYRSVEDIANEKDLAKLGDVPGVGIKKARQLKSAAEN 533 >UniRef50_Q1MQY9 Transcription elongation factor n=2 Tax=Desulfovibrionaceae RepID=Q1MQY9_LAWIP Length = 440 Score = 284 bits (727), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 153/443 (34%), Positives = 270/443 (60%), Gaps = 18/443 (4%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E+ ++ +S +K L R+ + + LE A+ T+ ++Y +DV V + +G+ + ++ Sbjct: 1 MNLELKKALDQISKDKGLDRDMLVDTLEDAVRTSVIRRYGDNLDVEVSYNDDTGEIEVYQ 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +VV+EVT P ++++ A+ D S L D + +++ RI Q+AKQVI+Q++R+ Sbjct: 61 FKIVVEEVTDPITQLSITEAKTHDPSAQLDDEMGFRLKVEDLGRIAAQSAKQVIIQRMRD 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ ++ +++++ GEI++G+V++ ++ ++LG EA++ +++ +P+E+++ GDRV+ Sbjct: 121 AEQEIIYEEYKDRIGEIVSGIVQRRDKGGWIINLGR-TEALLPKDEQIPKEHYKRGDRVQ 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 G++ VR E RG Q+ ++R+ + + LFR EVPE+ + ++I ARDPGSRAK+ V + Sbjct: 180 GLIIDVRKEGRGPQVIISRAHRDYMAALFRREVPEVDDGTVQIMGVARDPGSRAKVTVLS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ++ +DPVGACVG+RG+R+Q + EL GERIDIV+W + NA+APA ++ I VDE Sbjct: 240 RERDVDPVGACVGVRGSRIQNIVQELHGERIDIVIWSPEITTYARNALAPAIISRITVDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 ++ +++ V L AIGR GQNV+LA++L GW++++ T E++A Sbjct: 300 TENLLEVTVPDDQLTSAIGRKGQNVKLAAKLLGWKIDIFT-----ETRYNESNAVGRGLE 354 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA-- 418 + + E L+ G +TLE++ +EL+E G+ E V LR A N L+T A Sbjct: 355 QVASVAEISIETLLHSGLNTLEQINETSDEELIEKLGISESQVNDLRA-AVNFLSTTATV 413 Query: 419 ---------QAQEESLGDNKPAD 432 +A++ +N PAD Sbjct: 414 DSNKKKKEVEAEQAKDNENNPAD 436 >UniRef50_Q6MMS7 N utilization substance protein A n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMS7_BDEBA Length = 462 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 154/413 (37%), Positives = 253/413 (61%), Gaps = 12/413 (2%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV-- 65 V++ V +K + ++ + +A+ + A +KKY ++ + +G+ + F VV Sbjct: 12 VIDQVGKDKGIDKQVVIDAITQGMLVAARKKYGTYREIEAAYNEDTGEVELFEFKEVVPR 71 Query: 66 DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 125 ++ EI L+ A+ D ++ L D + ++E+ RI QTAKQ+I+QKVR+AER + Sbjct: 72 EKYIDEEVEIPLDEAQKLDPNVQLDDSIGIKMEASDLGRIAAQTAKQIIMQKVRDAERNI 131 Query: 126 VVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYS 185 + ++F E +GEI +G+ ++V + I +DLG EA I + +P E ++PGDR++G L Sbjct: 132 IFNEFEERKGEIASGIARRVEKGAIVVDLGRT-EAYIPPREQIPGEQYKPGDRIQGYLSE 190 Query: 186 VRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRI 245 VR RG Q+ ++R+ L++LF +EVPEI + V+EI AAAR+PG RAKIAV++ D + Sbjct: 191 VRQTTRGPQIIMSRADERYLMKLFEMEVPEIYDGVVEIMAAAREPGQRAKIAVRSKDNSV 250 Query: 246 DPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTM 305 DPVGACVGM+G+RVQ + EL GE+IDIV WD++ +F NA+APA+++ + +D+ M Sbjct: 251 DPVGACVGMKGSRVQNIVQELRGEKIDIVPWDEDITRFACNALAPAEISRVFLDDANREM 310 Query: 306 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL-- 363 +I V L+ AIG+ GQNVRLA++L+ W+L++++ + A + A F L Sbjct: 311 EIVVPDSQLSLAIGKRGQNVRLAAKLTTWKLDIIS------ESSAASRTAESIFNLMLIP 364 Query: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEP-TVEALRERAKNALA 415 + E A + + GF + + +A ++EL+ I G D+P E L + AK +A Sbjct: 365 GMSETMAQNIFQSGFGSFQAVATAAVEELMTIPGYDDPDKAEKLSKEAKGLVA 417 >UniRef50_B5JHK3 Transcription termination factor NusA n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHK3_9BACT Length = 419 Score = 278 bits (711), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 155/405 (38%), Positives = 248/405 (61%), Gaps = 28/405 (6%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+ EIL+V+E + EK + RE + A+ +A+ A K ++++ ID + G + + Sbjct: 1 MSSEILSVLEYMEKEKGIGREDMISAIVTAIKNAAAKGVNAGQELKITIDPRHGKMNAWA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVD V+ P EI+LE AR D+ LN+GD E +I+ RI QTA+Q I+Q++R+ Sbjct: 61 LLDVVDSVSDPKTEISLEKARQIDDELNIGDVFEKEIDPAYLGRIAAQTARQAIMQRLRQ 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + D F++ G+I++G+V++ R ++ +DLG AEA++ D +P E++ PG+R+R Sbjct: 121 FEKERIYDDFKDQVGDIVSGIVRRRERGDLIVDLGK-AEAMMPSRDQVPGEDYSPGERIR 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +L + RG +L +TRS P+ ++ LF +EV EI + ++I+A +R+PG R KIAV + Sbjct: 180 CLLLKIEATNRGPELILTRSNPKFVLRLFDLEVTEIADGTVKIEAFSREPGYRTKIAVTS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 +D ++DPVGACVG RGARV+++ ELGGE+IDI+ + ++P + + A+ PA ++++DE Sbjct: 240 SDPKVDPVGACVGARGARVKSIVRELGGEKIDIIRYFEDPKEMALEALKPAIPRNVIMDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM----TVDDLQAKHQAEAHA-- 354 + I V +LA AIGR GQN RL S+L GW++++M V ++ K QAEA Sbjct: 300 RSRRISIEVSEDDLAIAIGRKGQNARLTSKLVGWKIDIMKEEVKVVSMETK-QAEAAQGL 358 Query: 355 ----AIDTFTK-------------YLDIDEDFATVLVEEGFSTLE 382 ID+ T +LD++ED LVE GFS E Sbjct: 359 NQIEGIDSATAERLVNNGLISPELFLDVEEDD---LVEMGFSAEE 400 >UniRef50_B8J1Y6 NusA antitermination factor n=5 Tax=Desulfovibrionales RepID=B8J1Y6_DESDA Length = 449 Score = 278 bits (710), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 152/426 (35%), Positives = 266/426 (62%), Gaps = 9/426 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E+ ++ +S +K L R + + LE A+ T+ +++ +++DV V + ++GD + ++ Sbjct: 1 MNLELKKAIDQISKDKGLDRNMLIDTLEDAVRTSVLRRFSEDMDVEVSYNDETGDIEVYQ 60 Query: 61 RWLVV--DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118 +V+ +V P +I L AR D S+ + D + +++ RI Q+AKQVI+Q++ Sbjct: 61 FKIVMADGDVANPDTQIELAEAREHDPSVQVDDEMGFRVKVEDLGRIAAQSAKQVIIQRM 120 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 R+AE+ ++ +++++ GEI++G+V++ ++ ++LG EA++ RE+ +PRE+++ GDR Sbjct: 121 RDAEQEIIYEEYKDRVGEIVSGIVQRRDKGGWVVNLGRT-EAILPREEQIPREHYKRGDR 179 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 V+ ++ VR E RG Q+ ++R+ + + LFR EVPE+ + V++I ARDPGSRAK+AV Sbjct: 180 VQALIIEVRQEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAV 239 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 + ++ +DPVGACVG+RG+R+Q + EL GERIDIV+W + A + NA+APA V+ IVV Sbjct: 240 LSRERDVDPVGACVGVRGSRIQNIVQELHGERIDIVVWSADIATYARNALAPALVSRIVV 299 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 DE+++ +++ V L AIGR GQNV+LA++L GW++++ T EA+A Sbjct: 300 DEEENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFT-----ETRYNEANAIGHG 354 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418 + + E L+ G+S+L++L +EL + + + LR A N LA + Sbjct: 355 LEQVASVAEVSIEALLGAGYSSLDQLRQATDQELSDKLTISASRIADLRS-AINFLAPVV 413 Query: 419 QAQEES 424 + ES Sbjct: 414 EETPES 419 >UniRef50_D1AUG3 Transcription elongation factor n=5 Tax=Anaplasma RepID=D1AUG3_ANACI Length = 524 Score = 277 bits (709), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 168/503 (33%), Positives = 287/503 (57%), Gaps = 20/503 (3%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N E++ V V+ +K L E + +A+E AL ++ KY + ++ IDRK+G R+ Sbjct: 18 NLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKY-GDCKIKASIDRKTGVISISRQ 76 Query: 62 WLVVD--------EVTQPTKE------ITLEAARYEDESLNLGDYVEDQIESVTFDRITT 107 LVV+ + P+ E I + A + + + +GD + + + V D + Sbjct: 77 ALVVNDDMSFDGEQYGIPSGEVNKYKLIKISDAVADGKDVKVGDILLEPLPPVDVDYNSA 136 Query: 108 QTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM 167 + AKQ + Q + ER ++F++ G+++ GVVK+V +N+ +DL N +E + + Sbjct: 137 KVAKQKVAQLILIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDL-NGSEGYLPVYNT 195 Query: 168 LPRENFRPGDRVRGVLYSVRPE-ARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 + E FRP DRV+ + VR E G Q+F++R + LF+ E+PE+ + ++ IKA Sbjct: 196 IRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVSIKAL 255 Query: 227 ARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVIN 286 ARDPGSR+K+AV ++DK +DPVGAC+G RG R+Q + +EL GE+ID+VL+ + A+FV++ Sbjct: 256 ARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDLAKFVVS 315 Query: 287 AMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA 346 A+APA+V +++DED +++ V ++ AIGR GQN+RLAS+L GWE++V+ + Sbjct: 316 AIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDETEST 375 Query: 347 KHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEAL 406 + E + F LD++E +LV EGFST+E+L V + E+ I+G +E L Sbjct: 376 RKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEIAVEL 435 Query: 407 RERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDD 466 ++RA L + E L ++++L L ++ + KL G+ +ED+A D+ Sbjct: 436 KKRAAEYLVRRREEALEILKSMSVSEEVLELPYLEIEDVVKLCEGGIRNVEDIASMCTDE 495 Query: 467 LADI---EGLTDEKAGALIMAAR 486 D L+ E+ ++I+ +R Sbjct: 496 FYDTVPKARLSKEQVDSIILESR 518 >UniRef50_C6C0D5 NusA antitermination factor n=7 Tax=Deltaproteobacteria RepID=C6C0D5_DESAD Length = 456 Score = 275 bits (702), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 142/407 (34%), Positives = 248/407 (60%), Gaps = 6/407 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M E+ ++ +S ++ + R+ + + LE A+ ++ +KY +D+ V + +G+ + ++ Sbjct: 1 MGSELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVARKYGDAMDIEVNFNEDAGEIEVYQ 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V +EV EITLE A+ D ++ + D + +++ RI Q+AKQVI+Q++R+ Sbjct: 61 FKVVAEEVEDEISEITLEEAKEHDPNVQIDDEMGFKLKVEDLGRIAAQSAKQVIIQRMRD 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ ++ D+F+ EI++G++++ +R ++LG EAV+ + + +PRE ++ GDRV+ Sbjct: 121 AEQEIIYDEFKNRMHEIVSGIIQRRDRTGWIINLGRT-EAVLPKGEQIPRERYKRGDRVQ 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V+ E+RG Q+ V+RS P+ + LF+ EVPE+ + ++I ARDPG RAK+AV + Sbjct: 180 AFIIDVQKESRGPQITVSRSHPDYMTALFKREVPEVDDATVKIMGVARDPGLRAKVAVNS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D+ +DPVGACVG+RG+R+Q + EL GERIDIV+W + A + NA++PA + I VDE Sbjct: 240 LDRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWSQDIAMYAQNALSPAVITRIAVDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 ++ T+++ V L AIGR GQNV+LAS+L GW+++V T E +AA Sbjct: 300 EEKTLEVVVPDDQLTVAIGRKGQNVKLASRLLGWKIDVFT-----ESRYGEMNAASKGLD 354 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALR 407 + + E + GF T+ ++A + L+ I G+ V ++ Sbjct: 355 QLASVAEIPVDNFLSAGFETVSQVANASEEILMSISGMTPSKVSDMK 401 >UniRef50_D1U699 NusA antitermination factor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U699_9DELT Length = 466 Score = 274 bits (701), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 143/404 (35%), Positives = 246/404 (60%), Gaps = 6/404 (1%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+ ++ +S ++ + R+ + + LE A+ +A +K+ + +D+ V + SG+ + F + Sbjct: 3 ELKKAIDQISKDRGIDRDLLIDTLEEAVRSAVARKHGETMDIEVAFNEDSGEIEVFEFKV 62 Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 VV EV P EI+LE AR D + L D + + RI Q+AKQVI+Q++R+AE+ Sbjct: 63 VVAEVHDPISEISLENAREHDPNAQLDDEMGFPVRIEDLGRIAAQSAKQVIIQRMRDAEQ 122 Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 ++ +++++ GEI +G+V++ +R ++LG EA++ +++ +PRE ++ GDRV+ + Sbjct: 123 EIIFEEYKDRLGEITSGIVQRRDRTGWIINLGRT-EALLPKDEQIPRERYKRGDRVQAYI 181 Query: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 V E+RG Q+ V+RS P+ +IELF+ EVPE+ + ++I ARDPG RAK+AV + D+ Sbjct: 182 IDVLKESRGPQVVVSRSHPDYMIELFKREVPEVADGTVKIMGVARDPGLRAKVAVMSRDR 241 Query: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 +DPVGACVG+RG+R+Q V E+ GERIDIV+W + A + +A++PA + I VD+++ Sbjct: 242 DVDPVGACVGIRGSRIQNVVQEMKGERIDIVVWSPDIAMYAQHALSPAVITRITVDDEEE 301 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 +++ L AIGR GQNV+LA++L GW++++ T E +A+ + Sbjct: 302 ALEVVCPDDQLTLAIGRKGQNVKLAAKLLGWKIDIFT-----ESRYGELNASRKGMDQVA 356 Query: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALR 407 + E GF +LE + +ELL I GL + + +R Sbjct: 357 SVAEIPMESFFNAGFESLESIVRATNEELLAINGLTKSKIGDIR 400 >UniRef50_B5YJX4 Transcription termination factor NusA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJX4_THEYD Length = 365 Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 229/365 (62%), Gaps = 2/365 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M KE+ +VE + EK + ++ + E LE+AL +A +KKY + ++++I+ ++ D + F Sbjct: 1 MGKELKFLVEQIMREKGITKDAVIELLETALISAIRKKYGNKSSIKIKIEPQTFDINIFE 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV+EV EI++E + + +GD VE + F RI QTAK V+ QK+RE Sbjct: 61 IKKVVEEVKDSASEISIEEVKQKYIDKGIGDTVEVPLSIQDFGRIAVQTAKHVLFQKIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 ER+ + ++F++ G I++G V + + N + +G AEA++ +++LP++N + GD V+ Sbjct: 121 IERSQIFEEFKDKVGNIVSGTVLRKEKGNFYILVGK-AEAILPDKEVLPQDNLKRGDIVK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 ++ V+ + + ++R+ P ++ LF +EVPEI + ++EIK ARDPG R KIA + Sbjct: 180 AYIFEVKQTPKEPIIKLSRTHPNFVVGLFTLEVPEIQDGIVEIKTIARDPGERTKIAASS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D +DPVGACVGM+G RVQAV EL GERIDI+ + D+ + F+ A+ PA V + ++E Sbjct: 240 KDPSVDPVGACVGMKGTRVQAVVRELKGERIDIIPYSDDMSFFIAKALTPATVLKVGINE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDL-QAKHQAEAHAAIDTF 359 ++ T + VE L+ AIG+ GQNVRLAS+L+GW ++V++ + Q KH+ A +T Sbjct: 300 NEKTAVVVVENDQLSLAIGKKGQNVRLASRLTGWSIDVLSESEYNQMKHKETERAFKETN 359 Query: 360 TKYLD 364 K ++ Sbjct: 360 QKQVN 364 >UniRef50_Q9KA74 Transcription elongation protein nusA n=309 Tax=Bacteria RepID=NUSA_BACHD Length = 382 Score = 265 bits (677), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 132/345 (38%), Positives = 220/345 (63%), Gaps = 1/345 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E + + + EK + +E I EA+E+AL + K+ + Q +VRV ++R++G F Sbjct: 1 MNSEFMDALTTLEKEKGISKEVIIEAIEAALISGYKRNFNQAQNVRVDVNRENGSIRVFA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 R VV+EV EI+L+ A+ + + + D VE ++ F RI QTAKQV+ Q+VRE Sbjct: 61 RKEVVEEVFDARLEISLDEAKGINPNYEVDDVVEIEVTPKDFGRIAAQTAKQVVTQRVRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER ++ F + E +I+TG+V++ + I +DLG EA++ + +P E++R DR++ Sbjct: 121 AERGIIYADFIDREEDIMTGIVQRQDNRFIYVDLGK-VEALLPLSEQMPNESYRHNDRIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V +G Q+ ++R+ P +L LF +EVPEI + +E+K+ AR+ G R+KI+V Sbjct: 180 AYITKVEKTTKGPQIMISRTHPGLLKRLFELEVPEIYDGTVELKSVAREAGDRSKISVHA 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 + +DPVGACVG +G+RVQ + EL GE+IDIV W ++P ++V NA++P+ V + V+E Sbjct: 240 ENPEVDPVGACVGPKGSRVQTIVNELKGEKIDIVRWSEDPVEYVANALSPSKVVKVNVNE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ 345 ++ T + V L+ AIG+ GQN RLA++L+GW++++ + + Q Sbjct: 300 EEKTTQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAQ 344 >UniRef50_C1A8N6 Transcription elongation protein NusA n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8N6_GEMAT Length = 438 Score = 264 bits (674), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 155/391 (39%), Positives = 233/391 (59%), Gaps = 11/391 (2%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 + +IL + +SN K + RE++ L+ + A KK+ + V+ID G+ Sbjct: 4 SADILTALRELSNLKQITREELHGLLQDGIHAALAKKHGANVQAEVEIDEARGEIRIVLL 63 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VVDEVT ++E+T+E AR+ D +GD +E ++ + F R Q AKQ I+Q+VRE Sbjct: 64 KTVVDEVTDESREVTVEEARFMDPEFQVGDVMEIPVDFMEFGRTAVQAAKQRIIQRVREG 123 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGN--NAEAVILREDMLPRENFRPGDRV 179 ER + D+F G++++G V+++ R + + L AEA+I + RE++ G+ V Sbjct: 124 ERTRIRDEFAGRVGDLLSGEVQQIERGKLVVMLNKFREAEAIIPYREQNHREHYHQGEPV 183 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R VL V +G +L ++RS + LF++EVPEI + ++EIKAAAR+ GSR KIAV Sbjct: 184 RAVLKRVEDTPKGPRLILSRSDALFVQALFKLEVPEIQQGIVEIKAAAREVGSRTKIAVT 243 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 + D+ +DPVGACVG++GARVQAV ELGGERIDIV W +P +F A+APA VA + D Sbjct: 244 SRDEAVDPVGACVGLKGARVQAVVNELGGERIDIVPWSPDPERFAKLALAPARVARVFSD 303 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDD-LQAKHQAEAHAAIDT 358 T+ V+ L+ AIGRNGQNVRLAS+L+GW++++ + + L+ +A A + Sbjct: 304 AASRTIQAVVDEDQLSLAIGRNGQNVRLASELTGWKIDLYSSREWLEKGGEAPLFAPLPE 363 Query: 359 FTKYLDID----EDFAT----VLVEEGFSTL 381 T+ D+ E T VL E G+ TL Sbjct: 364 ETEEADVPLNEIEGLETATVAVLAEAGYRTL 394 >UniRef50_B2KC94 NusA antitermination factor n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KC94_ELUMP Length = 463 Score = 263 bits (673), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 156/459 (33%), Positives = 259/459 (56%), Gaps = 39/459 (8%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 KE++ +E++ EK + R+ I + +E AL +A +K + + +I+ + GD F+ Sbjct: 6 KELMMALESLEREKNIKRDDIIKTIEDALVSALRKNLGKTAQISAKINPEEGDIKAFQVL 65 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 +V+ V P EI+LE A+ D+ +G + + +E F RI Q AKQV++QKVR E Sbjct: 66 NIVEIVANPEMEISLEQAKAMDDRSEVGGTITNVLEVEDFSRIAAQIAKQVLIQKVRGIE 125 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 R +F+ EGE+ITG V++ + +I +DLG EA++ + + RE + G R++ + Sbjct: 126 RENTYKEFKPREGEVITGSVRRFSDRDIVVDLGK-VEAILPYSEQIKRERYSNGSRIKAI 184 Query: 183 LYSVRPEA-------------------------RGAQLFVTRSKPEMLIELFRIEVPEIG 217 + V + RG + ++R+ P L +LF++EVPEIG Sbjct: 185 ITKVLSQQDLLTIGEDPVLGRYKSAAFKMDKGQRGPYVILSRTSPAFLEDLFKVEVPEIG 244 Query: 218 EEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWD 277 E ++EIKA RDPG RAK+ V++ D ++DP+G CVGMRG R++A+ EL GERID++ + Sbjct: 245 EGIVEIKAIQRDPGFRAKVVVRSYDNKVDPIGTCVGMRGIRIRAIMNELSGERIDLIPYS 304 Query: 278 DNPAQFVINAMAPADVAS--IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWE 335 ++ ++N++APA S I+ E+K + I V LA AIG++ QN++LAS+L+GWE Sbjct: 305 EDVTTMIMNSIAPARANSVKIISAEEKKAL-IIVPDDQLAIAIGKDWQNIKLASKLTGWE 363 Query: 336 LNVMTVDDLQAKHQAEAHAAIDTFTKYL----DIDEDFATVLVEEGFSTLEELAYVPMKE 391 L V + +++ E A +D L I A LV+ GFS++E++A + + Sbjct: 364 LEVKS----ESQKLQEGQATVDNLESLLASVEGIGPKTAETLVKAGFSSVEKIAALEPEH 419 Query: 392 LLEIEGLDEPTVEALRERAKNALATIAQ--AQEESLGDN 428 L ++G+ E + + E AK L T + QEE++ D+ Sbjct: 420 LATVQGIGEKSAAKIIEGAKKYLETQGEEVLQEEAVNDD 458 >UniRef50_Q5GS98 Transcription elongation factor, NusA n=13 Tax=Rickettsiales RepID=Q5GS98_WOLTR Length = 520 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 159/468 (33%), Positives = 268/468 (57%), Gaps = 14/468 (2%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N +I+ +S +K L E I +ALESA+ +KY + V V IDR +G+ ++R Sbjct: 21 NLDIIKTAGEISLQKGLDFEVIMKALESAIEAVAYQKYGSKSKVVVNIDRSTGEVISYRE 80 Query: 62 WLVVDEVTQPTKE-------ITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 VVD+ +P E ITL A+ E +GD + +++ S+ D + + A+Q I Sbjct: 81 LKVVDD--EPNGEEHNGYGSITLTQAKLIKEDAKVGDTI-NELLSLNTDLASARIAQQRI 137 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 174 Q ++ E ++F++ GEI G+VK+V ++ +D+ N A + +++ E FR Sbjct: 138 AQVIKYEELKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDI-NGTRAYLPLRNLIGGELFR 196 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 GD+++ + +V+ G Q+ ++R+ L L E+PEI + ++ +K ARD GSR+ Sbjct: 197 EGDKIKAYIQTVKRSDDGRQIILSRASEGFLEALLSQEIPEIADGLVTVKGIARDAGSRS 256 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 K+AV + DK IDPVGACVG++G R++A+ EL GE+ID+V + + QFVI A+ PA+V+ Sbjct: 257 KVAVFSPDKNIDPVGACVGVKGERIKAIIHELNGEKIDVVHYFSDLGQFVIKAITPAEVS 316 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 354 +++DE ++ +++ V L+ AIG+ GQNVRLAS+L GW++ +++ + E Sbjct: 317 KVIIDESENCVELIVAEDQLSLAIGKKGQNVRLASELIGWKIEILSTQQESERRNRELSQ 376 Query: 355 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 F + L+++E +LV EGFS++E+++ +KEL IEG +E LR RA L Sbjct: 377 CSALFAEALNLEEIMGQLLVTEGFSSVEDISNASIKELASIEGFNEDIASELRNRANRYL 436 Query: 415 ATIAQAQEESLGDNKPADDLLNLE-GVDRDLAFKLAARGVCTLEDLAE 461 + E L D++NL +D +A L+ G+ TLE++A+ Sbjct: 437 KAENDRKIEELKSLGMESDVINLPLSIDDKIA--LSEHGIKTLENIAD 482 >UniRef50_B3SFF1 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SFF1_TRIAD Length = 348 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 138/339 (40%), Positives = 217/339 (64%), Gaps = 12/339 (3%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 EIL V EAV+ +K + +E I EALE A+A A K+KY I V+ I+R G+ + +R L Sbjct: 10 EILHVAEAVARDKGISKESIIEALEEAMAIAAKRKYGANIKVKAHINRNLGNIELYREVL 69 Query: 64 VV----------DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV 113 VV DE + K I + A+ D +N GD ++ + + R+ +AKQ+ Sbjct: 70 VVKDGFISDNTRDENNEEVKTIEISKAQETDPDINEGDVIKQILPPLEIGRLNAISAKQI 129 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENF 173 I+ KV+E E+ V ++++ GE++ GVV+K+ + LG+ AEA++ ++ L + + Sbjct: 130 IINKVKELEKDKVFEEYKNRVGEVLNGVVEKIETGGYIVKLGS-AEAILKKDQTLKTDFY 188 Query: 174 RPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSR 233 + GDR+R L + E+ G L ++R+ + +I+LF+ EVPEI + +IE+K ARDPGSR Sbjct: 189 KLGDRIRACLAKLDKESNGPILILSRTHKDFVIQLFKQEVPEIYDRIIEVKNIARDPGSR 248 Query: 234 AKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPA-D 292 KIAV ++D IDPVG+CVGMRG RVQA+ EL GE+IDIV W D+PA FV+N++ + Sbjct: 249 TKIAVYSSDPSIDPVGSCVGMRGVRVQAIIKELKGEKIDIVKWSDDPATFVVNSLGSSIR 308 Query: 293 VASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQL 331 V+ +++DE+++ ++I V + +QAIGR GQN++L S+L Sbjct: 309 VSKVIIDEEQNKIEIIVPEEDQSQAIGRRGQNIKLISEL 347 >UniRef50_B9XFC0 NusA antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XFC0_9BACT Length = 425 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 140/392 (35%), Positives = 234/392 (59%), Gaps = 1/392 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN + L V+E EK + R+ + A+E +L +A KK ++R ID KSGD F Sbjct: 1 MNADFLTVLEFWEREKGISRQVLISAVEESLLSAAKKAVGPARELRCIIDPKSGDIKAFA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + +V ++V I+L A+ LG+ VE ++ F RI +Q AKQ ++Q +R Sbjct: 61 KLIVSEKVVSKHDHISLPDAKKIKPDAQLGEEVEVEVTPAGFGRIASQYAKQSLMQHIRR 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ ++ +F++ G+II+GVV++ +R ++S+DLG EA++ + +P E ++ G+R+R Sbjct: 121 AEKQLIFTEFKDRVGDIISGVVRRFDRSDVSVDLGKY-EALLPNRERVPTEEYQIGERIR 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + +V G ++ ++R+ P +I+LF++EV EI + IEIK AR+PG R K+AV T Sbjct: 180 CYVKAVENGPHGPEIILSRADPRFVIKLFQLEVSEINDGTIEIKGIAREPGFRTKLAVYT 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D+++DPVGACVG+RG RV+ + EL E++DI+ W+ N F+ NA+APA + + VDE Sbjct: 240 RDEKVDPVGACVGLRGQRVKNIVRELNNEKVDIIRWEPNIKGFLTNALAPAQLKTFEVDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + I V L+ AIG+ GQN RL+S+L+GW++++ + + + A+ T Sbjct: 300 ANKRVKIVVGEDQLSLAIGKRGQNARLSSKLTGWQVDIEPEVVHRMGFEEKVAEAVKTLA 359 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKEL 392 I ++ A LV +G + LE+L + +L Sbjct: 360 AIPGITQEQADTLVHQGLTRLEDLLQADISDL 391 >UniRef50_A6TRL0 NusA antitermination factor n=5 Tax=Firmicutes RepID=A6TRL0_ALKMQ Length = 346 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 131/340 (38%), Positives = 220/340 (64%), Gaps = 1/340 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+ E + +E + +K + R+ +F+ALE+AL ++ K+ + ++VRV++ R +GD + Sbjct: 1 MSLEFIEALEQIEKDKGISRDVLFDALEAALISSYKRNFGSAVNVRVEMLRDTGDVHVYS 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + VV+ V EI ++ A+ D + L D VE Q+ F RI QTAKQV+VQ++RE Sbjct: 61 QKKVVEVVEDDLLEINIDEAKEIDPNYALDDIVEKQVTPRNFGRIAAQTAKQVVVQRIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER +V ++F E EIITG V +V + N+ ++LG EA++ + +P E + DR++ Sbjct: 121 AERGIVYEEFINRESEIITGTVSRVAKGNVYINLGK-TEAILGPNEQIPNEVYNHADRIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V+ +G Q+ V+R+ P ++ LF +EVPEI + V+E+K+ +R+ GSR KIAV + Sbjct: 180 TYIVEVKNTTKGPQIHVSRTHPGLVKRLFELEVPEIHDGVVEVKSISREAGSRTKIAVFS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D+ +DPVGACVG +G+RVQ + EL GE+IDI+ + + P +F+ N+++PA V + V+ Sbjct: 240 IDENVDPVGACVGPKGSRVQMIVDELKGEKIDIIKYSEEPKEFISNSLSPAKVLNARVNP 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 + T + V L+ AIG+ GQN RLA++L+GW++++ + Sbjct: 300 EDKTARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKS 339 >UniRef50_D2L1U7 NusA antitermination factor n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1U7_9DELT Length = 496 Score = 260 bits (664), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 140/397 (35%), Positives = 244/397 (61%), Gaps = 8/397 (2%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDT--FRR 61 E+ ++ +S ++ + R+ + + LE A+ ++ +KY + +DV V + + G+ + F+ Sbjct: 3 ELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQFKV 62 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 + D+V P EI L AR D ++ L D + ++ RI Q+AKQVI+Q++R+A Sbjct: 63 VVEDDDVADPAAEICLADARAIDPNVALEDEMGFKLTVEDLGRIAAQSAKQVIIQRMRDA 122 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E+ ++ +++++ +GEII+G++++ +R ++LG EA++ +E+ +PRE ++ GDRV+ Sbjct: 123 EQEIIYEEYKDRKGEIISGIIQRRDRSGWIINLGRT-EALLPKEEQIPRERYKRGDRVQA 181 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + V P RG Q+ V+R+ + + LF EVPE+ + ++I ARDPGSRAK+AV + Sbjct: 182 YIIEVLPSGRGPQIIVSRTHADYMKALFAREVPEVSDGTVKIVGVARDPGSRAKVAVISK 241 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D+ +DPVGACVG+RG+R+Q + EL GERIDIV+W+ A + NA++PA V I VDED Sbjct: 242 DRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIATYAANALSPARVTRISVDED 301 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 +++ V L AIGR GQNV+LA++L GW++++ T + E +A+ + Sbjct: 302 DKALEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIFTESRFR-----EVNASKKFLEQ 356 Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGL 398 + E ++ GF ++E+LA P + + I G+ Sbjct: 357 LASVAEIPVDNIISAGFESMEQLADAPDEAIDAISGM 393 >UniRef50_B6AR17 Transcription termination factor (NusA) n=4 Tax=Bacteria RepID=B6AR17_9BACT Length = 452 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 155/435 (35%), Positives = 255/435 (58%), Gaps = 22/435 (5%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 +N+E+L+V++ + EK + +E + ALESAL A +K+Y + +V+I+ ++G+ + Sbjct: 2 VNQELLSVIDQLHREKGISQETLIVALESALLAAARKRYGGGDNFQVEINPRTGEVQVLQ 61 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V++V P++EI+L A D +GD + +E F RI Q AKQV+ QKVRE Sbjct: 62 IRRIVEQVESPSEEISLAEALESDPEAEVGDEIGSYLEIDDFGRIAAQAAKQVMFQKVRE 121 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE +V +F +G+I+ GV+ R N +DLG + LRE M PRE+FR GDR++ Sbjct: 122 AEWDVVTKEFGGRQGDIVNGVIIGHERKNYIVDLGKTEAVLPLREQM-PRESFRRGDRIK 180 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +L +R +RG QL ++R+ P+ + LF EVPEI E ++E++ R+PG RAKIAV + Sbjct: 181 ALLLDMRTTSRGPQLVLSRTHPDFVSRLFEKEVPEIAEGILEVRNVVREPGERAKIAVYS 240 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D +DPVG+CVG++G RVQAV EL GE++DI+ W +P+ F+ A++PA + + + Sbjct: 241 RDPNVDPVGSCVGVKGVRVQAVVRELHGEKVDIIEWSPDPSTFIARALSPAKAVRVSI-K 299 Query: 301 DKHTMDIA---VEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK---------- 347 D T +A V+ L+ AIGR G NVRLA++L+GW++++ + +Q++ Sbjct: 300 DMGTEKVATVVVQDSQLSLAIGRRGHNVRLAAKLTGWKVDIFSETQMQSEAGLDERAERV 359 Query: 348 -HQAEAHAAIDTFTKYLDIDE------DFATVLVEEGFSTLEELAYVPMKELLEIEGLDE 400 AE + T L I++ + A +L + GF TL+ +A+ ++ + + Sbjct: 360 ASLAETLGSQSGDTSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGP 419 Query: 401 PTVEALRERAKNALA 415 T L + A++ L Sbjct: 420 KTAAKLIQTAQDFLG 434 >UniRef50_C4XIM5 Transcription elongation protein NusA n=4 Tax=Desulfovibrio RepID=C4XIM5_DESMR Length = 463 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 137/384 (35%), Positives = 243/384 (63%), Gaps = 8/384 (2%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDT--FRR 61 E+ ++ +S ++ + R+ + + LE A+ ++ +KY + +DV V + + G+ + F+ Sbjct: 3 ELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQFKV 62 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 + D+V P EI L A+ D ++ L D + ++ RI Q+AKQVI+Q++R+A Sbjct: 63 VVEDDDVADPAAEICLSDAKAIDPNVALEDEMGFKLAVEDLGRIAAQSAKQVIIQRMRDA 122 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E+ ++ +++++ +GEII+G++++ +R ++LG EA++ +E+ +PRE ++ GDRV+ Sbjct: 123 EQEIIYEEYKDRKGEIISGIIQRRDRAGWIINLGRT-EALLPKEEQIPRERYKRGDRVQA 181 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + V P RG Q+ V+R+ + + LF EVPE+ + ++I A ARDPGSRAK+AV + Sbjct: 182 FIIEVLPSGRGPQIIVSRTHGDYMKALFAREVPEVSDGTVKIVAVARDPGSRAKVAVISK 241 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D+ +DPVGACVG+RG+R+Q + EL GERIDIV+W+ A + NA++P+ V I VDED Sbjct: 242 DRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIASYAANALSPSRVTRISVDED 301 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 + ++++ V L AIGR GQNV+LA++L GW+++++T + EA+A+ + Sbjct: 302 EKSLEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIVTESRFR-----EANASKKFLEQ 356 Query: 362 YLDIDEDFATVLVEEGFSTLEELA 385 + E ++ GF ++E+LA Sbjct: 357 LASVAEIHVDNIIAAGFVSMEQLA 380 >UniRef50_UPI0001C3544A transcription elongation factor NusA n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3544A Length = 401 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 131/340 (38%), Positives = 219/340 (64%), Gaps = 1/340 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKE+L + + E + ++ + EA+E++L TA K + + +V+V ++ ++ DF + Sbjct: 1 MNKELLEALNILEKENNISKDTLLEAIENSLLTACKNHFGKADNVKVSMNHETCDFSVYA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV+EV P +I+L A+ D ++GD V+ I+S F RI TQ AK VI+QK+RE Sbjct: 61 EKEVVEEVEDPLLQISLAEAKMTDPKYDIGDIVQCPIDSKKFGRIATQNAKNVILQKIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 R + + + E E++TG+V++ N+S++LG +A++ +M+ E F+ +R++ Sbjct: 121 EGRKALYNDWYCQEKEVVTGIVQRYLGKNVSINLGK-VDAILNETEMVKGEVFKATERIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V+ +G ++ V+R+ P+++ LF EV E+ + +EIKA AR+ GSR KIAVK+ Sbjct: 180 VYVLEVKDTPKGPRISVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVKS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ND+ +DPVGACVG+ GARV ++ EL GE+IDI+ WDDNPA + NA++PA V +V DE Sbjct: 240 NDQNVDPVGACVGLNGARVNSIVNELRGEKIDIINWDDNPAYLIENALSPAKVICVVADE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 + + V L+ AIG+ GQN RLA++L+G+++++ + Sbjct: 300 ESREAQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKS 339 >UniRef50_B1ZX42 NusA antitermination factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZX42_OPITP Length = 408 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 141/380 (37%), Positives = 231/380 (60%), Gaps = 4/380 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+ EIL+V+E + EK +PR + + +AL TA +K +++++I+ K+G + Sbjct: 1 MSSEILSVLEYMEKEKGIPRADMIATIANALKTAAQKGVNSGQELKIEINAKNGQLHAWC 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVD V+ P EI +E A+ +G+ +E +I+ T RI QTA+Q ++Q++R+ Sbjct: 61 LLKVVDSVSNPKTEIHVERAQALKPGAIIGEIIEKEIDPSTLGRIAAQTARQAVMQRLRQ 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + D F++ G I+TG V++ R+++ +DLG AEAV+ ++ +P E ++PG+R+R Sbjct: 121 FEKDRIFDDFKDQVGNIVTGTVRRRERNDLYIDLGK-AEAVMPAKEQVPGEEYQPGERIR 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +L ++ RG ++ +TR P+ + LF +EV EI + ++I+A AR+PG R KIAV + Sbjct: 180 CLLLNIESTPRGPEIILTRGSPKFVRRLFELEVTEIADGTVKIEAFAREPGYRTKIAVIS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D ++DPVGACVG RGARV+ + EL GE+IDI+ + +P + +I AM PA I +DE Sbjct: 240 TDPKVDPVGACVGARGARVKTIVRELNGEKIDIIRYFASPREMIIEAMKPAVPREITLDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 H + + V +LA AIGR GQN RL S+L GW L+ +++ +A AI + Sbjct: 300 KNHRILLKVATDDLAIAIGRKGQNARLTSRLIGWRLD---IEEFRAVGDDPRGNAIASLV 356 Query: 361 KYLDIDEDFATVLVEEGFST 380 K +D A LV+ G ++ Sbjct: 357 KAFALDATVAGRLVDMGINS 376 >UniRef50_Q044C0 Transcription elongation factor n=45 Tax=Bacilli RepID=Q044C0_LACGA Length = 423 Score = 253 bits (647), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 138/343 (40%), Positives = 222/343 (64%), Gaps = 9/343 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE++ + EK + +E I +A+++AL A KK Y Q +V V D K G+F Sbjct: 18 MSKEMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNA 77 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVDEV E++L+ A + + +GD + ++ F R+ QTAKQVI+Q++RE Sbjct: 78 IKTVVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLRE 137 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDN--ISLDLGNNAEAVILREDMLPRENFRPGDR 178 AER ++ ++ +++ EI+TG V++ RDN + + +GN EAV+ D LP EN+ P D+ Sbjct: 138 AEREHIISEYSQYKDEIVTGTVER--RDNRFVYVKIGN-VEAVMTHNDQLPGENYNPQDK 194 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 VR ++ V +++GAQ+ V+R+ P+++ LF EVPE+ + +EI + AR+ G R KIAV Sbjct: 195 VRVLVTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAV 254 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 K+ND IDPVG VG +G RVQ + ELGGE ID+V +++NP+ F+ NA+ PA+V ++ Sbjct: 255 KSNDPDIDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQF 314 Query: 299 ---DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 D+DK+ + + V L+ AIG+ GQNVRLA++L+G+++++ Sbjct: 315 SGDDDDKNAL-VIVPDYQLSLAIGKRGQNVRLAARLTGYKIDI 356 >UniRef50_B3WER8 Transcription elongation protein NusA (Transcription termination-antitermination factor NusA) n=78 Tax=Firmicutes RepID=B3WER8_LACCB Length = 417 Score = 251 bits (640), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 133/340 (39%), Positives = 220/340 (64%), Gaps = 3/340 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE++ ++A+ EK + +E + EALE+AL +A K+ Y Q +V V+ D K GD + Sbjct: 1 MSKEMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHIYA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V DEV E++L+ A +++ +GD ++ ++ F RI QTAKQVI+Q+VRE Sbjct: 61 VKEVTDEVFDSRLEVSLKEALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER++V D++ ++E EI+ GVV++ + I ++LG EAV+ R+D +P E + DR++ Sbjct: 121 AERSIVYDEYSQYEDEILQGVVERRDNRFIYVNLGK-IEAVLGRQDQMPNEKYEAHDRIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V ++G Q+FV+R+ P ++ LF EVPEI + +EI AR+ G R KIAV++ Sbjct: 180 VYVTKVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 + +D VG VG RGARVQAV EL GE +D+V W+++PA ++ NA+ PA V ++ ++ Sbjct: 240 TNDAVDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFND 299 Query: 301 DKH--TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 + + + + V L+ AIG+ GQN RLA++L+G+++++ Sbjct: 300 EANDRSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDI 339 >UniRef50_B3DXW5 Transcription elongation factor n=2 Tax=Verrucomicrobia RepID=B3DXW5_METI4 Length = 441 Score = 250 bits (639), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 141/416 (33%), Positives = 241/416 (57%), Gaps = 11/416 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN+E+LA++E + EK + R+ EA++SAL A KK D+RV+I K+G + Sbjct: 24 MNQEVLAIMEYMEKEKGINRQVFIEAMQSALLAAAKKSIGPARDLRVEIHPKTGRINVRA 83 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + VV++V +I+L+ AR D ++N+GD VE ++ F RI Q KQ I Q ++ Sbjct: 84 KLEVVEKVQNSHDQISLKRAREIDPNVNIGDLVEVEVTPKDFGRIAAQVFKQTINQALKG 143 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 ER MV+ +F++ I++G ++++ R +I +DLG E ++ ++ +P E + G+R++ Sbjct: 144 IERKMVLSEFKDRINNIVSGTIRRIERSDIIIDLGR-YEGIMPFKERVPTEEYVVGERIK 202 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + SV G + ++RS P ++ L +EV E+ ++++E+KA AR+PG R KIAV + Sbjct: 203 AYVLSVDDTPHGPMIILSRSHPNFILRLLELEVSEVADKIVEVKAIAREPGFRTKIAVWS 262 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ++ +IDPVG+CVG+RGARV+ + EL E+ID+ W N + I A+ PA V + VD+ Sbjct: 263 SNPKIDPVGSCVGVRGARVKNIVRELHSEKIDLFKWSPNVEELAIEALKPAKVKKVEVDQ 322 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM-----TVDDLQAKHQAEAHAA 355 H + + V+ N + A+G+ G+N LAS++ GW+++++ VD+ K A Sbjct: 323 QNHRVKVTVDEENYSIALGKKGKNAWLASKIVGWDIDIVKEPSFVVDNFTQK----ITKA 378 Query: 356 IDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLE-IEGLDEPTVEALRERA 410 + L ID+ A +V GF E +A ++L+ + LD + L+E A Sbjct: 379 AEEMASSLAIDQSVAEQIVRAGFINPEAVAESEEEDLMSALPELDPQLIHRLKEAA 434 >UniRef50_Q7URQ7 N utilization substance protein A n=1 Tax=Rhodopirellula baltica RepID=Q7URQ7_RHOBA Length = 498 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/406 (36%), Positives = 243/406 (59%), Gaps = 39/406 (9%) Query: 1 MN-KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTF 59 MN ++IL V+++ +K + E +F+A+ESAL +A KK+Y +E DV V I R +G Sbjct: 1 MNPQDILRYVDSLHRDKNIDPELLFQAIESALQSAAKKQYGEESDVIVSISRDNGAI--- 57 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 AA E L GD DQI RI QTAKQVI+QKVR Sbjct: 58 -------------------AATLAGEPL--GD---DQI-----GRIGAQTAKQVIIQKVR 88 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 EAER ++ ++R+ GEI++G++ + + +++LGN EA++ R + +P E+ +RV Sbjct: 89 EAERDALMLEYRDQIGEIVSGMIGRADGGVATVNLGN-VEAILPRSEQIPGESLHANERV 147 Query: 180 RGVLYSVRPEARG-AQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 R +++ VRP ++ ++R++P+ + LF E+PE+ + VI IK+ +R+PG R+K+AV Sbjct: 148 RAIVFEVRPSGGNRVRVVLSRTRPQFVQRLFEQEIPELNDGVIAIKSISREPGYRSKVAV 207 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 + D++IDP+ CVG RG+R++AV EL GE ID+V +D +P + NA+ PA+V +++ Sbjct: 208 SSEDQQIDPISVCVGYRGSRIKAVREELAGEHIDVVRYDSDPEVLIPNALQPAEVDQVLL 267 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 + + V+ L+ AIGR GQNVRLAS+L GW++ +MT A+ + + A+ Sbjct: 268 CDMIGRAIVLVQEDQLSLAIGRRGQNVRLASKLCGWDIEIMT----NAELEEQIERAVGG 323 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVE 404 F++ I E+ A LVE+G+ + ++L+ + +E+ GL E V+ Sbjct: 324 FSQIPGITEEIAQALVEQGYLSYDDLSVIEPDLFMEMSGLSEADVD 369 >UniRef50_D1N2Z3 NusA antitermination factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2Z3_9BACT Length = 414 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/414 (35%), Positives = 236/414 (57%), Gaps = 8/414 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M E+L ++E + E+ + R+ + +ALESA+ TA +K +++V+ID +G + Sbjct: 1 MANELLTILEYIEQERGISRDSLIKALESAILTAARKSIHPASELKVKIDPVTGQIQAWA 60 Query: 61 RWLVVDEVTQPT-KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 VV+E PT ++ + AR + LG+ VE ++ F RI QTA+Q IVQ++R Sbjct: 61 TLEVVEE--NPTCDQLVIARARERFPDVQLGEKVEWEVTPRNFGRIAAQTARQAIVQQLR 118 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 +AE+ V ++F + G+II+G V++ NI +D AE ++ ++ + E + PGD + Sbjct: 119 KAEKENVQEEFADRIGQIISGTVRRFEAGNIIIDF-QKAEGIMPSKEKIHDEQYMPGDII 177 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R +L V G L V+RS PE + LF E+ EI + V++I AR+ G R KI+V Sbjct: 178 RALLLRVDINTAGPSLIVSRSCPEFVTRLFEREIAEIHDGVVKIMGIAREAGKRTKISVM 237 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 + D R+DPVGACVGMRG RV+ ++ ELG ERIDIV +D + ++ NA+ PA V S+ V+ Sbjct: 238 STDPRVDPVGACVGMRGQRVRNITNELGNERIDIVPYDADIRKYATNALLPAKVQSVEVN 297 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDD--LQAKHQA--EAHAA 355 E KH + + V A G+ QNVRL S+L GW +N+ ++ +A H + A Sbjct: 298 EAKHELIVRVTDEQSKLAFGKKAQNVRLCSKLIGWNINIRNEEERGAEAGHSIGEQLKIA 357 Query: 356 IDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRER 409 + + + E A +LV G+ T++ + + LLEIEG+D ++ ER Sbjct: 358 AQKLAEAIGVSEATAGLLVNNGYVTVDGVKAADPEALLEIEGIDTAEMQNALER 411 >UniRef50_D2R7W7 NusA antitermination factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7W7_9PLAN Length = 404 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/416 (34%), Positives = 239/416 (57%), Gaps = 37/416 (8%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 ++L +V+++ EK + ++ +F+A+E+AL +A KK Y D+ + IDR +G Sbjct: 5 DMLRIVDSLHREKNIDKDVVFQAIEAALVSAAKKHYGDAADITINIDRNTGALSGIADGQ 64 Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 +D +EI+ RI QTAKQVI+QK+REAER Sbjct: 65 ALD-----PEEIS--------------------------GRIGAQTAKQVIIQKIREAER 93 Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 ++ ++ + G++I GVV + + LG EA++ R + +P E P +RVR ++ Sbjct: 94 DSLLGEYGDQIGQLINGVVTRSEGAATIVSLGT-IEAILPRSEQIPGETHHPNERVRAIV 152 Query: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 + V+P+ ++ ++R++P+ + LF E+PEI + VI + A AR+P R+K+AV + D+ Sbjct: 153 FEVKPQGSRVKVVLSRTRPQFVQRLFEQEIPEIADGVISVNAIAREPAHRSKVAVSSTDQ 212 Query: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 R+D VGACVG+RG R++ + EL GERIDIV W D+ + ++ PA+V +++ + Sbjct: 213 RVDCVGACVGVRGNRIKNIVDELSGERIDIVRWSDDAETLIRASLQPAEVDQVLLCDMIG 272 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 + V L+ AIGR GQNVRLAS+L GW++ +MT D+L + + A+ F+K Sbjct: 273 RAIVLVREDQLSLAIGRKGQNVRLASKLCGWDIEIMTNDEL----EQQIDRAVGGFSKIE 328 Query: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQ 419 + E+ A LVE+G+ + ++L+ + L+E+ GL E VE + +A+ LAT A+ Sbjct: 329 GVTEELAQRLVEQGYLSYDDLSVIEPDALMEMGGLTEEQVEEIVNQAET-LATDAE 383 >UniRef50_C1SH20 Transcription termination factor NusA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SH20_9BACT Length = 460 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 143/401 (35%), Positives = 235/401 (58%), Gaps = 10/401 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE+ VV+ + EK + RE + EALE ++ A +K + ++ V +D G + Sbjct: 1 MSKELTKVVDEIGREKGIARELLQEALEESIFAAVARKIGKLLEPDVFVDIDKGTIEILL 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V + V EI ++ A E+ LGD + R AKQ + +K+R+ Sbjct: 61 PKEVCESVDDKWTEIHIDNADEFKENPQLGDVIMVPATLEELGRQAALVAKQKLFEKLRD 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ +V+DQF++ GEI+ GVV K +RDN+ +++G EAV+ + +M+ + F GD VR Sbjct: 121 AEKQVVLDQFQDRIGEIVNGVVLKTDRDNLIINIGK-TEAVLPKREMIGGDFFNRGDYVR 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +L +R QL ++R+ PE + +LF E+PE+ E +I++KA +R+PG RAK+AV T Sbjct: 180 ALLLDIRIIKGWPQLILSRTHPEFMKKLFETEIPEVFEGIIDVKAVSREPGDRAKVAVYT 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 + IDPVGAC+G++G R+ A+S EL GE+ID++ W + +FV NA++PA+V + E Sbjct: 240 TNSSIDPVGACIGLKGVRINAISNELRGEKIDVIEWSPDSIKFVCNAISPAEVVLTNIFE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDL----QAKHQAEAHAAI 356 D+ T++I V L+ AIG+ GQNVRLA++L+ W L+V+ + + + Q + Sbjct: 300 DEETIEIVVPDDQLSLAIGKKGQNVRLAAKLTEWRLDVLKESEYAEIRKERMQDQEQDLK 359 Query: 357 DTFTKY-LD----IDEDFATVLVEEGFSTLEELAYVPMKEL 392 + + Y LD +D D L+E G+ +E+L+ KE+ Sbjct: 360 EFYEMYNLDNLEGLDADTMHSLIEAGYDDIEKLSNADFKEV 400 >UniRef50_C1F696 Transcription termination factor NusA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F696_ACIC5 Length = 548 Score = 244 bits (623), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 151/407 (37%), Positives = 242/407 (59%), Gaps = 10/407 (2%) Query: 9 VEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDE- 67 +EA+S +K + E + A+E A+A AT+K Y+ + ++R ++DR++G+ + VV+ Sbjct: 9 IEALSRDKGIDPEVVVGAVEDAIALATRKYYKTQENMRAELDRETGEIRAYIYKAVVETP 68 Query: 68 --VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 125 + P +ITLE AR + +G + + RI Q AKQVI QKVREAER Sbjct: 69 ELIEDPLNQITLEEARQLAPGVEVGGEIRFYKPTDVLGRIAAQMAKQVIFQKVREAERDT 128 Query: 126 VVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYS 185 V +++ GE++T VK+V ++ DLG AEA + + + E F G+RVR VL Sbjct: 129 VFNEYAHRVGEVLTATVKRVEMQDVIFDLGK-AEARMPKREQSRLEQFSVGERVRVVLLR 187 Query: 186 VRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRI 245 V A+G Q+ V+R+ PE++ LF+ EVPEI + + I+A AR+ G R KIAV + DK + Sbjct: 188 VDRAAKGPQVIVSRAAPELVTSLFQGEVPEIYDNTVTIRAIAREAGERTKIAVMSRDKDV 247 Query: 246 DPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKHT 304 DPVGACVGM+G RVQ++ EL GE+IDI+ + + F A+ PA V+ + + D + Sbjct: 248 DPVGACVGMKGMRVQSIIRELRGEKIDIIEFSEEVTTFAERALQPAKVSRVSIADLSEKH 307 Query: 305 MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDD--LQAKHQAEAHAAIDTFTKY 362 +++ V+ L+ AIG+ GQNVRLA++L GW++++ + ++ + + Q A T T Sbjct: 308 LEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVEQQMGGFAQGGTATAI 367 Query: 363 LDIDEDFATV---LVEEGFSTLEELAYVPMKELLEIEGLDEPTVEAL 406 ++ E ++ LV G +T+E LA + ++L EI G+ E T+E + Sbjct: 368 EEVKELGESIIQKLVAAGITTVESLADMTPEQLEEIPGIGEKTLEKI 414 >UniRef50_P48514 Transcription elongation protein nusA n=8 Tax=Deinococci RepID=NUSA_THET8 Length = 387 Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 133/348 (38%), Positives = 216/348 (62%), Gaps = 12/348 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYE----QEID------VRVQID 50 MN+E + ++ ++ E+ + E+I EA + AL A K+ + +EID V V ID Sbjct: 1 MNREFVEAMQHLALERGVSVEEILEAFKEALRKAYIKRQKGYKKEEIDQGKGPEVDVYID 60 Query: 51 RKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTA 110 SG + VV++V P KEI L A D + +GD +E I R+ Q Sbjct: 61 PNSGRIEMVEVRRVVEKVEDPDKEIALAEALQYDPEVQVGDEMEFPINPEELSRMAIQDL 120 Query: 111 KQVIVQKVREAERAMVVDQFREHEGEIITGVVKKV-NRDNISLDLGNNAEAVILREDMLP 169 +Q++ Q+++E+ER + +++++ EG+++TGVV +V NR N+ ++LG EA + R + +P Sbjct: 121 RQILTQRLKESERNRIYNEYKDKEGQVLTGVVTRVDNRGNVFVELGR-GEAYLPRSEQIP 179 Query: 170 RENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARD 229 E + PG R++ L V A+G L V+R+ ++L L + EVPEI E ++EIKA AR+ Sbjct: 180 TEKYHPGQRIKVYLKKVDKSAKGPSLLVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIARE 239 Query: 230 PGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMA 289 PG R+K+AV +++ +DP+GAC+G +G R+QAVS ELG E++DI+LW +P +F+ NA++ Sbjct: 240 PGRRSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWSKDPKEFIRNALS 299 Query: 290 PADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELN 337 PA V SI +D + + V + AIG GQNVRLAS+L+G++++ Sbjct: 300 PAQVGSIELDPEAKKARVKVTKDQHSLAIGTGGQNVRLASKLTGYDIH 347 >UniRef50_B2UQQ4 NusA antitermination factor n=2 Tax=Verrucomicrobiaceae RepID=B2UQQ4_AKKM8 Length = 431 Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 151/431 (35%), Positives = 245/431 (56%), Gaps = 17/431 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDV---RVQIDRKSGDFD 57 M +I A+++ EK L REKI ALESA +A +K + R +I+ G Sbjct: 1 MTNDIKALIDYYEREKGLSREKILLALESAFLSAYRKMVPGSGSINYLRAEINVDKGKVR 60 Query: 58 TFRRWLVV--DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 F VV +E + +I L A D++ L D + I F RI QTA+Q ++ Sbjct: 61 IFADLEVVPDEEYSDKFNQIPLSLAVKLDKNAVLHDLLPTNITPKGFGRIAVQTARQTML 120 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRP 175 QK+ +AE+ M+ D+F++ G+++TG +++ + +I +DLG E V+ + +P E++ Sbjct: 121 QKLLDAEKEMLYDEFKDRAGDLVTGTIRRFEKGDIFVDLGK-FEGVMTSRERVPNEDYSV 179 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 GDR+R + VR EARG ++ ++RS P ++ LF EV EIG++ +EI AR+ G R K Sbjct: 180 GDRMRFYVVEVRTEARGPEVILSRSHPNLVRRLFESEVVEIGDQTVEIHGIAREAGYRTK 239 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 +AV ++D ++DPVGACVGMRGARV+ + EL E++DI+ W ++P FV A++P + Sbjct: 240 VAVISHDDKVDPVGACVGMRGARVKNIVRELNNEKVDILEWTEDPVTFVREALSPVEPRE 299 Query: 296 IVVDEDKHTMDIAVE-AGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA-KHQAEA- 352 I VDE+ + + V+ +L++AIGR GQN RL S+L GW++ V D +A K Q++A Sbjct: 300 ITVDEEARKIFVIVQDDKDLSKAIGRRGQNARLTSRLMGWDVQVRVFDVQEAEKRQSQAA 359 Query: 353 --------HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVE 404 AA T ++ L+I E+ A LV G + L L ++ E G+ Sbjct: 360 AEEVMRQCQAAAKTLSEQLEIPEETAMGLVTMGGTDLVALTGFEASDIAESMGIPAEEAA 419 Query: 405 ALRERAKNALA 415 + ++A++ ++ Sbjct: 420 QILDKARDLIS 430 >UniRef50_B2GBN4 Transcription termination-antitermination factor NusA n=10 Tax=Lactobacillus RepID=B2GBN4_LACF3 Length = 408 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 134/376 (35%), Positives = 224/376 (59%), Gaps = 24/376 (6%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEI-DVRVQIDRKSGDFDTFRRW 62 E+L ++ + EK + +E I EAL+ ALA A +K YE +V V+I ++G+F + Sbjct: 9 ELLDAMDILEKEKGIKKEVIIEALKDALANAYQKNYEDNAANVEVEISDRTGEFKVYAAK 68 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 VV+EVT +EI+L A + LGD ++++ F R+ QTAK V++QK+R+ E Sbjct: 69 TVVEEVTNDVEEISLADALRVNRGYELGDIFKEEVTPRNFGRLAAQTAKSVVLQKLRDEE 128 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 R ++ D++ + + +++ G V + + I ++LG+ EA + + D +P E++R DR++ Sbjct: 129 RNIIFDKYNKLKDDLVEGEVSREDERYIYVNLGDGVEAAMNKHDQMPNEHYRVHDRIQVY 188 Query: 183 LYSV--RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V + ARG +FV+R+ P++L LF EVPEI + ++E+K R+ G RAK+AV + Sbjct: 189 VTRVNDKSGARGPLVFVSRTSPDLLKRLFEKEVPEIQQGIVEVKGIVREAGDRAKVAVFS 248 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D+ +DPVG CVG RG RVQA+ +LGGE IDIV +++ P +F+ NA+ PA+V ++ DE Sbjct: 249 RDENVDPVGTCVGPRGTRVQAIVNQLGGENIDIVKYEEAPEEFIRNALNPAEVEGVLFDE 308 Query: 301 DKHTMD---------------------IAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 + +D + V L+ AIG+ GQNVRLA+QL+G+++++ Sbjct: 309 NNGEVDEPASVDENGREHEERIHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKIDIK 368 Query: 340 TVDDLQAKHQAEAHAA 355 + A +A+ A Sbjct: 369 SSSQAAALEEAQPEPA 384 >UniRef50_B1GZN5 Transcription antitermination factor NusA n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZN5_UNCTG Length = 418 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 132/389 (33%), Positives = 234/389 (60%), Gaps = 2/389 (0%) Query: 27 LESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDES 86 +E+AL +A KK + ++V +++ + G+ +VV +V P EI ++ A+ D+S Sbjct: 29 IENALVSAYKKHVGKNVNVEAKVNPELGEMTASVVKVVVKDVVNPLLEICVQDAKKFDQS 88 Query: 87 LNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVN 146 + +G V +++ F RI QTAKQVIVQK+RE+ER + D+ +E G+I G + ++ Sbjct: 89 VEIGTEVRIPLDTRDFSRIAAQTAKQVIVQKIRESERDSLFDEMKEKIGQIANGAIYRIT 148 Query: 147 RDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLI 206 N+ +DLG EA++ + + +E F G ++ V+ V +G+ + ++R+ E++ Sbjct: 149 NRNLIVDLGKT-EAILPSSEQVFKEKFSVGQYIKAVIIKVEKSVKGSGVVLSRTSIELVK 207 Query: 207 ELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTEL 266 LF +EVPEI E+++EI R+PG R KI V +++ ++DPVGACVG++GARV+ + EL Sbjct: 208 RLFELEVPEIYEKIVEIVNVVREPGVRTKITVLSHNPKVDPVGACVGVKGARVKPIIDEL 267 Query: 267 GGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKHTMDIAVEAGNLAQAIGRNGQNV 325 GERID+V + +PA+++ +AM+PA + S+ + E++ ++ V L AIG+NG NV Sbjct: 268 RGERIDLVSYSVDPAKYIASAMSPAKIVSVTTISEEEKKAEVLVTDDMLFLAIGKNGHNV 327 Query: 326 RLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELA 385 RLA++L+GW ++V + + + + F K E +LV+ G + +E+L+ Sbjct: 328 RLAAKLTGWHIDVKSEGQKKQEGNERIEKQAEVFEKLEGFSERIIKMLVKAGITDVEKLS 387 Query: 386 YVPMKELLEIEGLDEPTVEALRERAKNAL 414 + + L+ + G+ T E + E AKN++ Sbjct: 388 LLTTEYLITLPGIGHKTAEKIIEVAKNSI 416 >UniRef50_B2V8D7 NusA antitermination factor n=2 Tax=Sulfurihydrogenibium RepID=B2V8D7_SULSY Length = 371 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 223/364 (61%), Gaps = 20/364 (5%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYE-QEID-VRVQIDRKSGDFDT 58 M+ ++ V+E +S EK +P + I +AL + TA KK+++ +E D V++ D++ + Sbjct: 1 MSVKLKNVIETISREKNIPEDVIEKALRDGILTAVKKEFKLREKDAVKIIFDKEKDELKV 60 Query: 59 FRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118 + V V TKEI LE A+ D + + G YV + RI AK+VI +KV Sbjct: 61 LIKKKVTPFVEDETKEIALEEAKNYDPNADYGKYVYVPLNLEDIGRIALSVAKEVIAKKV 120 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 + ER ++ +F+++EG+IITG V++ D+I +DLG EA++ +E+ +P+E ++ GDR Sbjct: 121 SKVERDILYREFKDYEGKIITGTVRRFEGDDIIVDLGR-IEAILPKEEQIPKEKYKIGDR 179 Query: 179 VRGVLYSVRPE-----------ARGAQLF------VTRSKPEMLIELFRIEVPEIGEEVI 221 +R ++ V E R ++F ++R+ P L +L IEVPEI E I Sbjct: 180 IRALVLKVSKENTYPIIEKGKLKRVIKVFEPPMVILSRTHPNFLKKLLEIEVPEIAEGEI 239 Query: 222 EIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPA 281 E+KA AR+PG RAK+AV + DK IDPVG VG++G+R+ VS+EL GE+ID++ WD++PA Sbjct: 240 EVKAVAREPGERAKVAVYSKDKNIDPVGVVVGLKGSRILNVSSELSGEKIDVIEWDEDPA 299 Query: 282 QFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 +F+I A+APA + + ++IAV L+ AIG+NG N +LA +L+GW +++++ Sbjct: 300 KFIIRALAPARAKKYRLLPREKRIEIAVPREELSLAIGKNGINAKLAHKLTGWHIDILSE 359 Query: 342 DDLQ 345 +D + Sbjct: 360 EDFE 363 >UniRef50_A6NTX6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A6NTX6_9BACE Length = 400 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 128/343 (37%), Positives = 211/343 (61%), Gaps = 6/343 (1%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID-VRVQIDRKSGDFDTFR 60 KE A + + EK +P+ + E + AL +A K+ +E D + V+ D + G+ + Sbjct: 16 GKEFFAAIGMIEQEKGIPKGYMLEKITQALISAYKRDHEGAGDNIMVEADEEKGEVRMYV 75 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + VV+ V P E++L AR + LGD V ++++ F RI QTA+QVI+Q +RE Sbjct: 76 KKDVVETVDNPYTEVSLADARQRLPHIRLGDVVRVEVKTKDFGRIAAQTARQVIIQGMRE 135 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDL----GNNA-EAVILREDMLPRENFRP 175 AER M+ D+F E E++TGVV +++ + S L GN A +A + + + E FR Sbjct: 136 AERGMIYDEFSSKEHELLTGVVTRIDPRSGSASLRIGSGNEATDAFLAAGEQVRGETFRE 195 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 GDR++ + VR +G Q+ ++R+ P ++ LF +EVPEI + +E+K+ AR+ GSR K Sbjct: 196 GDRLKVYVVEVRRSTKGPQVLISRTHPGLVKRLFELEVPEIFDGTVEVKSIAREAGSRTK 255 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 +AV + D +DP+GACVG RG RV + EL GE++DI+ + ++PA++V A++PADV S Sbjct: 256 LAVWSADPNVDPIGACVGPRGQRVNNIVEELKGEKVDIIKYSEDPAEYVAAALSPADVIS 315 Query: 296 IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 + +D + + V L+ AIG+ GQN RLA++L+G+++++ Sbjct: 316 VTTLDDGKSCRVVVPDDQLSLAIGKEGQNARLAAKLTGFKIDI 358 >UniRef50_C7RGN8 NusA antitermination factor n=7 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RGN8_ANAPD Length = 433 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 127/372 (34%), Positives = 229/372 (61%), Gaps = 5/372 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN + + ++ + EK L + I +AL+ AL + +K Y+ E +V V ID ++G + F Sbjct: 1 MNNDFMLALDELCKEKNLDKATILDALQKALIKSYQKNYDNEENVDVIIDEETGQIEVFA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVDEV EI+L+ A E+ S +LGD ++ F R+ QTA+ +++QK+R+ Sbjct: 61 LKEVVDEVDDTITEISLKDALEENSSYHLGDIARIKLTPKNFGRVAAQTARNIVIQKIRD 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 A+R + ++ E E+ITG +++ ++ N+ ++L + E V+ ++ +P E + +++ Sbjct: 121 AQRDSLYGEYIERANEMITGTIQRQDKYNVYVNL-DKIEGVVPIKEQVPTEEYPANAKMK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 ++ VR ++ Q+ ++RS +++ LF +EVPEI + +IEI + AR+ GSR K+AV + Sbjct: 180 FLIKEVRNSSKEPQIVLSRSSQDLITRLFELEVPEITDGIIEIYSLAREAGSRTKMAVFS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ND+ ID VGAC+G +G RV ++ EL GE+IDI+ +D + F+ NA++PAD+ ++V+E Sbjct: 240 NDEGIDAVGACIGFKGIRVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIEVLVNE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + V + L+ AIG+ GQN RLA++L+GW++++ + ++ ++ Q E ID Sbjct: 300 KSKKSLVVVSSDQLSLAIGKEGQNARLAARLTGWKIDIKSSEEYESLSQEE----IDEIL 355 Query: 361 KYLDIDEDFATV 372 +IDE+ + V Sbjct: 356 GLNEIDEEASEV 367 >UniRef50_Q01W32 NusA antitermination factor n=3 Tax=Bacteria RepID=Q01W32_SOLUE Length = 542 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 141/410 (34%), Positives = 239/410 (58%), Gaps = 9/410 (2%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 I +E +S EK + + + +A++ A+ A +K Y D +D K+G + V Sbjct: 26 IFQSIEILSKEKGIDPQIVLDAVKDAMLIAARKHYRSTEDYVADMDPKTGAIKLYAVKKV 85 Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 V+ V P+ E+TL AR D + +G V + RI+ QTAKQVI QKVREAER Sbjct: 86 VEAVEDPSHEMTLAEARRIDSTAEVGGEVRIPKNTDALGRISAQTAKQVIFQKVREAERE 145 Query: 125 MVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLY 184 V +++ GE++ +K+V + LDLG EA + +++ E + GDRVR ++ Sbjct: 146 TVFNEYSGRTGELVNCTIKRVEGPDYILDLGKT-EAKLPKKEQSRLEGYSVGDRVRCIIK 204 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 244 V ++G + V+R+ PE+++ LF EVPEI + + I+ AR+ G R KIAV++ D+ Sbjct: 205 LVDKSSKGPGVLVSRAAPELVMRLFEQEVPEIYDGTVAIRGCAREAGERTKIAVQSRDRD 264 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKH 303 +D VGACVGM+G RVQ++ EL GE+IDI+ + ++ F +A++PA V+ I V+D + Sbjct: 265 VDSVGACVGMKGMRVQSIIRELRGEKIDIIEYSEDSVVFATHALSPAKVSRITVIDPLEK 324 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAE------AHAAID 357 M++ V+ L+ AIG+ GQNVRLA++L GW++++ + ++ + + +++ A + Sbjct: 325 HMEVIVDDSQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVESQMAALVAPGAPVS 384 Query: 358 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALR 407 Y + E+ A L+E G +T+E+L + +EL + G+ +VE ++ Sbjct: 385 VLIDY-GMAEEMAVKLLENGVATIEKLGAMTPEELEVLPGIGPESVEGIQ 433 >UniRef50_A6CF45 Transcription elongation factor NusA n=3 Tax=Planctomycetaceae RepID=A6CF45_9PLAN Length = 494 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 139/409 (33%), Positives = 230/409 (56%), Gaps = 33/409 (8%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 KE+L +V+A+ +K++ +E +F +E A+ +A ++ + + ++ V IDR +G Sbjct: 3 GKEVLRIVDAIQRDKSIDKEIVFGGIEQAILSAARRHFGDDHELSVDIDRDTG------- 55 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 +PT L GD + I R+ QTAKQV++QK+REA Sbjct: 56 --------EPT-------------VLCDGDKLGKDILGEILGRVAAQTAKQVMIQKIREA 94 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER V D++ E + + ++G V +V + ++LG E ++ R + +P E+FR DRVR Sbjct: 95 ERDTVFDEYMEMQYQSVSGTVSRVEGGAVLVNLGK-IEGILPRGEQIPGESFRVNDRVRA 153 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 V+ VR ++ ++R+ P+M+ LF +E+PE+ + +I++++ AR+ G R+K+AV Sbjct: 154 VVLDVRKAGSRVKVILSRTHPDMVRRLFELEIPEVADRIIDVRSLAREAGYRSKVAVSCI 213 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D ID VGACVGMRGAR++ + EL GERIDIV W+D+ V N++ PA+V +++ Sbjct: 214 DSSIDCVGACVGMRGARIKNIVDELAGERIDIVRWNDSLQVLVPNSLQPAEVEDVILCPM 273 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 + + V L AIGR GQNVRLAS+L GW++ VMT Q + + ++ F+ Sbjct: 274 LGRVIVLVRDDQLPLAIGRKGQNVRLASKLVGWDIEVMT----QTELDEQLDKTVEAFSS 329 Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 410 + E+ A LV +GF + +L+ + +L E+ GL E + E A Sbjct: 330 IPGVSEELAESLVSQGFFSYYDLSVIEPDQLAELGGLTAEQCEQIVEVA 378 >UniRef50_UPI0001C31DB6 NusA antitermination factor n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31DB6 Length = 503 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 140/362 (38%), Positives = 219/362 (60%), Gaps = 23/362 (6%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KEIL V ++ EK + EK+ ALE AL +A KK+ +V++DR+ GDF + Sbjct: 1 MSKEILDAVRGLAAEKNISSEKLMVALEDALLSAYKKQPGAAPYAQVEMDRELGDFTVWE 60 Query: 61 RWL---VVDEVTQPTKEI-----------TLEAARYEDESLN---LGDYVEDQIESVT-- 101 + + D++ +EI T EA + L+ L +Y EDQIE V Sbjct: 61 LKIPEDLEDQLITEQEEIIAAEFSGVDPETGEARELPEPELDFEKLAEY-EDQIERVDVT 119 Query: 102 ---FDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNA 158 F RI QTAKQVI+Q++REAER M+ +++R+ GE+ITG+V++ + + L Sbjct: 120 PEDFGRIAAQTAKQVILQRIREAERDMMFEEYRDRVGELITGIVQQSDSRYTLVQLRERV 179 Query: 159 EAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE 218 EA++ + + + E + R++ V+ V +G + V+R PE++ LF +EVPEI + Sbjct: 180 EALLPKSEQVDGERYDHSQRIKAVIKDVSASTKGPSIIVSRRDPELIKALFELEVPEIAD 239 Query: 219 EVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDD 278 ++EI AR+PG R+KIAV ++ +DPVGACVG RG+RV+ V +EL GE+IDI+ ++D Sbjct: 240 GLVEITNVAREPGYRSKIAVVSHADGVDPVGACVGPRGSRVRMVVSELRGEKIDIIPYND 299 Query: 279 NPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 PA+FV A++PA V ++VD+D + V L+ AIGR GQN RLA++L+GW +++ Sbjct: 300 EPARFVAKALSPARVREVLVDDDGKQATVIVPDDQLSLAIGREGQNARLAARLTGWRIDI 359 Query: 339 MT 340 + Sbjct: 360 RS 361 >UniRef50_C0QTL7 Transcription termination factor NusA n=2 Tax=Hydrogenothermaceae RepID=C0QTL7_PERMH Length = 374 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 135/361 (37%), Positives = 212/361 (58%), Gaps = 20/361 (5%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDE 67 V+EAV+ EK +P E I +AL + A KK+Y + +V+V D+++ + + V Sbjct: 8 VIEAVAKEKNVPEEIIEKALIDGITAAVKKEYGYKDNVQVIFDKEADELKVLLKKRVTPF 67 Query: 68 VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVV 127 V P ++I+LE A+ D +G YV + RI AK+VI KV E+ ++ Sbjct: 68 VENPKRDISLEEAKKIDPKAEVGSYVFVPLNLEELGRIALNAAKEVITHKVARVEKNILF 127 Query: 128 DQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSV- 186 +F+E EG+I+TG V++ +I +DLG EAV+ E+ + +E +R GDR+R ++ V Sbjct: 128 KEFKELEGKIVTGTVRRFEDGDIIVDLGR-IEAVLPEEEQIKKEKYRVGDRIRALILKVI 186 Query: 187 -----------------RPEARGAQLFV-TRSKPEMLIELFRIEVPEIGEEVIEIKAAAR 228 +P R L + +R+ P L +L IEVPEI E IEIKA AR Sbjct: 187 KDGSYPVYERGKVKRVIKPIDRDKPLVILSRTHPNFLRKLIEIEVPEIQEGEIEIKAIAR 246 Query: 229 DPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM 288 +PG RAK+AV T DK IDPVG VG++G+R+Q VS EL GE+ID++ WD +PAQF++ A+ Sbjct: 247 EPGERAKVAVWTEDKNIDPVGVVVGLKGSRIQNVSAELSGEKIDVIEWDPDPAQFILRAL 306 Query: 289 APADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKH 348 +P+ + ED+ +++AV L+ AIG+ G N +LA +L+GW +++++ +D + Sbjct: 307 SPSHPKKWRLLEDEKRIEVAVPKNELSLAIGKGGINAKLAHKLTGWHIDILSEEDFERIQ 366 Query: 349 Q 349 Q Sbjct: 367 Q 367 >UniRef50_A8SMZ8 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMZ8_9FIRM Length = 378 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 113/335 (33%), Positives = 220/335 (65%), Gaps = 1/335 (0%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 + L ++ + EK + +E IF++LE AL + +K + + +V++ I+R +G + F Sbjct: 13 DFLRALDEIEREKGVSKEIIFDSLEKALLKSYEKNFGEYENVKININRTTGKVELFAIKT 72 Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 VV+ V EI+L+ A+ +LGD V +++++ F R+ QTA+ +++QK+++AER Sbjct: 73 VVEVVEDNITEISLDDAKAISTKYSLGDEVSIKLKTMDFGRVAAQTARNIVIQKIKDAER 132 Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 ++ + F++ E E+I+G +++++R+N+ ++LG EA++ + + E +R G+R++ + Sbjct: 133 EVIYNDFQDKERELISGQIQRIDRNNLFINLGK-LEAIVTPPEQIKSEVYRVGERLKFYV 191 Query: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 V+ +GAQ+ ++RS +++LF +EVPEI + +EI++ AR+PGSR KIAV + + Sbjct: 192 KEVKNTPKGAQVLLSRSDVNFVLKLFELEVPEILDGTVEIQSIAREPGSRTKIAVFSKND 251 Query: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 +DPVGACVG + +RV ++ EL GE+IDI+++ N +++ N+++P++V ++ +E ++ Sbjct: 252 DVDPVGACVGYKRSRVSSIIKELKGEKIDIIVYSKNVKEYLSNSLSPSEVIAVFTNESEN 311 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 I V L+ AIG+ GQN RLA++L+ W +++ Sbjct: 312 RARIIVPDSQLSLAIGKEGQNARLAAKLTNWRIDI 346 >UniRef50_C1TMK5 Transcription termination factor NusA n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMK5_9BACT Length = 366 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 127/331 (38%), Positives = 207/331 (62%), Gaps = 4/331 (1%) Query: 12 VSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQP 71 ++ E+ L + I ++E+ALA+A KK E+ ++ V+ID ++GD VVDEV Sbjct: 14 LTEERNLSQSIILGSIEAALASAYKKYKEKNLEPEVKIDGETGDISIMEIRRVVDEVKNS 73 Query: 72 TKEITLE-AARYEDESLNLGDYVEDQIESV--TFDRITTQTAKQVIVQKVREAERAMVVD 128 E+T E AA L GD V+ ++E +F RI QTA+QVI+Q++++AER ++ + Sbjct: 74 DAELTSEEAAALGFPGLVEGDVVKTEVEIAPESFGRIAAQTARQVIIQRLKDAEREIIFN 133 Query: 129 QFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRP 188 +F E G+++ GVV K D I + + EA++ RE+ + E + G R++ L VR Sbjct: 134 EFSERVGDMVNGVVFKAENDQILVRISERTEAMLPREERINGETYELGSRMKFYLLDVRQ 193 Query: 189 EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPV 248 RG ++ V+R+ P +L L +E+PEI + V+EI R+ G+RAK+AV T D +DPV Sbjct: 194 TTRGPRIVVSRTHPGLLRRLMELEIPEIRDGVVEIHGIVREAGARAKVAVTTLDPNVDPV 253 Query: 249 GACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKHTMDI 307 GACVG G+R++ +S EL GE+ID+V+W D+P Q++ N ++PA V + + E + + + Sbjct: 254 GACVGNGGSRIKTISNELNGEKIDVVIWSDDPLQYIRNTLSPAKVVRVEPILEQEKSAKV 313 Query: 308 AVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 L+ AIG+ GQNVRLA++L+GW++++ Sbjct: 314 FARPDQLSLAIGKAGQNVRLAARLTGWKVDI 344 >UniRef50_A9AV46 NusA antitermination factor n=11 Tax=Bacteria RepID=A9AV46_HERA2 Length = 444 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/348 (35%), Positives = 210/348 (60%), Gaps = 5/348 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQE---IDVRVQIDRKSGDFD 57 M + A + ++ E+ +PRE + + +E AL +A ++ +DV+++++ +G Sbjct: 1 MKSDFYAAISQIAAERGIPRESVQDVVEQALISAYRRYLGSNPPPVDVKIELEPNTGRIR 60 Query: 58 TFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 + VVDEV EI +E AR + +G+ V + F RI QTAKQV++Q+ Sbjct: 61 VYAEKQVVDEVMDDRFEIDIEDARNVRADVEIGETVYVESTPDDFGRIAAQTAKQVVLQR 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 ++E ER + ++ + EGEI+T V++ + N+ L++G AEA++ +++ + +N+R G Sbjct: 121 IKEVERDHIYGEYFDREGEIVTATVQRTAKGNVILEVGR-AEAILPQKEQISHDNYRHGQ 179 Query: 178 RVRGVLYSVR-PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 R++ L R + RG +L +R+ +++ LF +EVPEI +EIK+ AR+PG R+K+ Sbjct: 180 RLKVYLMEARRDDPRGPRLVASRTHKDLIKRLFEMEVPEIYNGTVEIKSIAREPGLRSKV 239 Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296 AV + IDPVG+CVGMRG R+Q + EL GE+ID+V W + F+ NA++PA V + Sbjct: 240 AVHARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWGADMRVFIANALSPAQVVEV 299 Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDL 344 +DE + T + V L+ AIG+ GQNVRLA++L GW +++ + L Sbjct: 300 HLDEGEKTATVVVPDKQLSLAIGKEGQNVRLAAKLVGWRIDIKSASSL 347 >UniRef50_Q1Q1G4 Strongly similar to transcription elongation protein NusA n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1G4_9BACT Length = 357 Score = 234 bits (596), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 130/352 (36%), Positives = 214/352 (60%), Gaps = 34/352 (9%) Query: 1 MNKE-ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTF 59 M+KE +L +V+++ +K + +E +F+ +E+AL TA KK + + V +QIDRK+G+ Sbjct: 1 MDKENLLRLVDSLHRDKEIAKEVVFQGIEAALITAAKKHFRSQEAVSIQIDRKTGEI--- 57 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 + +E R D S LG RIT QTAKQVI+QK+R Sbjct: 58 ---------------VAMEGDRKIDPS-ELG-------------RITAQTAKQVIIQKIR 88 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 EAER ++ + F + +G I++G V++ + ++LG E V+ + + E++ G+RV Sbjct: 89 EAERDVIFEDFCKRKGVIVSGKVQRFEGATMIVNLG-KTEGVLQKSEQTANEHYTIGERV 147 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R V+ V+ ++ ++R+ P+ + +LF +EVPEI E IEIKA AR+ G R+KIAV Sbjct: 148 RAVILDVKKVGTRVKITLSRTHPDFVRKLFELEVPEIAENTIEIKALAREAGQRSKIAVA 207 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 ++D+ +D VGACVGMRG+R++ + EL GE+IDI+ W + P + NA+ PA+V+ I++ Sbjct: 208 SSDENVDCVGACVGMRGSRIKNIVDELNGEKIDIIRWSEEPELLLPNALKPAEVSGIILS 267 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAE 351 + T I V L+ AIG+ GQNVRLAS+L+ W ++++T + + + +A+ Sbjct: 268 PENRTATIVVPNDQLSLAIGKRGQNVRLASRLTEWNIDIITDAEFEKRQKAD 319 >UniRef50_D1B5D7 NusA antitermination factor n=3 Tax=Synergistaceae RepID=D1B5D7_THEAS Length = 369 Score = 234 bits (596), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 127/345 (36%), Positives = 217/345 (62%), Gaps = 4/345 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 + +E ++ + EK L + I +LE+AL +A +K +V V ID ++G+ Sbjct: 3 LGREFGKALKQLEAEKGLSLDVISSSLEAALVSAYRKFKGGNQNVEVFIDFENGEIFLSE 62 Query: 61 RWLVVDEVTQPTKEITLE-AARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 VV EVT P EI++E A R + GD + ++ F RI QTA+QVI+Q+++ Sbjct: 63 VKQVVREVTCPDTEISVEEAHRMGFGDVEEGDVIRIEVFPENFGRIAAQTARQVIIQRLK 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 +AER ++ ++F + G+++ G + KV D I + L + EA++ RE+ + E +R GDR Sbjct: 123 DAERQIIFEEFADRTGDLVQGTIFKVEGDQILVRLNDRTEAILPREERVLGEAYRVGDRY 182 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 + L VR +G ++ V+R+ P +L +LF +EVPEI + +IEIK R+ G R+K+AV+ Sbjct: 183 KFFLLDVRQTTKGPRIVVSRTHPGLLRKLFELEVPEIRDGIIEIKNVVREAGGRSKVAVQ 242 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI--V 297 + D +DPVGACVG +G R+++V ELGGER+D+++W +P +V NA++PA V + + Sbjct: 243 SLDSNVDPVGACVGPKGTRIKSVMDELGGERVDVIVWSSDPIAYVKNALSPAKVVKVEPL 302 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 +D+++ + + V L+ AIG+ GQNVRLA++L+GW++++ ++ Sbjct: 303 LDQER-ALRVFVRPDQLSLAIGKAGQNVRLAARLTGWKIDIKVLE 346 >UniRef50_Q3Z7U1 N utilization substance protein A n=5 Tax=Dehalococcoides RepID=Q3Z7U1_DEHE1 Length = 491 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 122/344 (35%), Positives = 205/344 (59%), Gaps = 2/344 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKK-YEQEIDVRVQIDRKSGDFDTF 59 M + L + +S EK LP+E + +ESAL +A +K+ + ++ V+ID+ +G Sbjct: 1 MKSDFLLAITQLSAEKNLPKEVVLATVESALVSAYRKESFAPNQNIAVKIDQLTGKVKVM 60 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 LVV++VT +E+ L A+ +GD + + RI QTAKQVI+Q++ Sbjct: 61 AEKLVVEKVTDSRQEMRLLEAKRLKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLH 120 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 EAE + D++ G+ + GVV+++ I++D+G EA++ + E +R G R+ Sbjct: 121 EAENTAIFDEYASKAGDTLVGVVQRIEPKQITVDIGR-VEAIMPASEQAYGERYRAGQRI 179 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 + + V A+G + V+RS P ++ LF +EVPE+ +++EIKA AR+ GSR+K+AV Sbjct: 180 KVYVVDVAKTAKGPAVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVG 239 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 IDPVG CVG+RG R+Q + +EL GE+ID+V WD A F+ N+++PA V ++++ Sbjct: 240 ALQPGIDPVGCCVGLRGIRIQNIVSELNGEKIDVVAWDSEIANFIANSLSPAQVTKVILN 299 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDD 343 E + + + + L+ IG+ GQNVRLA +L+GW +++ + D Sbjct: 300 EAEKSAIVVIPDRQLSLGIGKEGQNVRLAVKLTGWRIDIKSASD 343 >UniRef50_A8F3W1 NusA antitermination factor n=12 Tax=Thermotogaceae RepID=A8F3W1_THELT Length = 344 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 209/342 (61%), Gaps = 2/342 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN +L ++ + EK + +++I E LE AL +A KK + +V V+IDR +GD F+ Sbjct: 1 MNLGLLDALDQLEEEKGISKDEIIEILEKALVSAYKKNFGTAKNVDVKIDRMTGDIQLFQ 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + VV+EV P ++++E AR D G + +I F RI QTAKQV++Q++RE Sbjct: 61 VFDVVEEVEDPLTQMSVEEARKADPLAESGKKIFKKISVKNFGRIAAQTAKQVLIQRIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + + G +IT V +V D + +G E + + + + E+ G+ ++ Sbjct: 121 LEKERQYEHYSTLAGSVITVEVIRVTSDWADIRVGK-IETRLPKREWISGESISAGELIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + SV + +G ++ V+R+ PE + L ++E+PEI ++++IKA R+PG R K+AV + Sbjct: 180 VYVQSVVKDKKGPKIMVSRAVPEFVAGLLKLEIPEIENDIVQIKAIVREPGVRTKVAVVS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVD 299 + ++DPVGAC+G G+R+ A+ EL GE++DI W D+P Q ++NA+APA V S+ ++D Sbjct: 240 TNPQVDPVGACIGEGGSRISAILRELKGEKVDIFRWTDDPRQLIVNALAPASVTSVEILD 299 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 ++ + + V L+ AIG+ GQN RLA++L+GW++++ V Sbjct: 300 FERKAVRVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPV 341 >UniRef50_B5YEH2 Transcription termination factor NusA n=2 Tax=Dictyoglomus RepID=B5YEH2_DICT6 Length = 364 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 129/340 (37%), Positives = 204/340 (60%), Gaps = 1/340 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 + ++ V+E + EK L + + EAL AL +A KK Y RV+I+ + F Sbjct: 3 LGEDFWVVLEQIITEKKLDKNVVLEALRKALLSAFKKAYGTSKGARVEINFNKQEISIFV 62 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV++V EI+LE A+ LGD +E +IE F RI Q AKQVI+Q ++E Sbjct: 63 VKKVVEKVNDNISEISLEEAKSLKPDAKLGDEIEIEIEPQEFGRIAVQVAKQVIMQSLKE 122 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER ++ ++++ EGE++ G V ++ + N+ + + EAV+ ++ +P E + G R+R Sbjct: 123 AERRILYEKYKAKEGELVNGTVVRIEKGNVYVRF-PDIEAVLPVKEQIPGEEYWIGRRLR 181 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 L VR + + ++RS P L LF +EVPEI E +EI + AR+PG R+K+AV + Sbjct: 182 AYLLEVRKTTKDPLVILSRSHPGFLKRLFELEVPEIREGTVEIVSIAREPGMRSKVAVYS 241 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 + +DP+GACVG +G R+Q + EL GE+IDIVLW +PA+FV +++PA S+ + E Sbjct: 242 HLPEVDPIGACVGYKGVRIQNIINELNGEKIDIVLWSKDPAEFVARSLSPAKPISVEIRE 301 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 ++H + V + AIG++GQNVRLA +L+ W ++V T Sbjct: 302 EEHKAIVIVPPDQFSLAIGKDGQNVRLAVKLTSWRIDVRT 341 >UniRef50_C4Z5N4 N utilization substance protein A n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z5N4_EUBE2 Length = 381 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 134/356 (37%), Positives = 215/356 (60%), Gaps = 19/356 (5%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKE++ ++A+ E + +E +F A+E +L K ++++ + RV++DR++GDF + Sbjct: 1 MNKELIMALDALEKENGIDKEIMFAAIEKSLMDEYKAEFDKADNGRVELDRRTGDFHIYS 60 Query: 61 RWLVVDEVTQPTK------------EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQ 108 VV+EV P +I LE AR LGD + +++S F R + Sbjct: 61 DRTVVEEVIVPENRENKKEKYVSGTDIALEDARKIKPDCQLGDVITVEVKSEEFSRKAAK 120 Query: 109 TAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKV-NRDNISLDLGNNAEAVILREDM 167 AK IVQ +RE E+ + +++ E E+ITG+V++V + ++++DLG + V+ +D Sbjct: 121 NAKNTIVQTIREQEKNALYNEYHSKEKELITGIVQRVADNGDLTIDLGR-LQTVLKADDK 179 Query: 168 LPRENFRPGDRVRGVLYSV---RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIK 224 + F PGDR++ LY V E G + V+R E++ +LF EV EI + V+EI Sbjct: 180 FKDKKFVPGDRIK--LYVVDVINREKGGPVVRVSRKSQELVKKLFEEEVTEIKDGVVEIM 237 Query: 225 AAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFV 284 AR+ GSR K+AV+ N +DPVGACVG+ GARV+A+ ELG E+IDI+ WD N AQ + Sbjct: 238 GIAREAGSRTKMAVRANVANVDPVGACVGINGARVKAIVNELGNEQIDIIEWDSNSAQLI 297 Query: 285 INAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 +NA++PA V S V D+++ I V L+ AIG+ GQNVRLA++L+G+ +++ + Sbjct: 298 VNALSPAKVVSAVADDEEKKAKIVVSEQQLSLAIGKQGQNVRLAAKLTGYGIDIKS 353 >UniRef50_D1AL29 NusA antitermination factor n=10 Tax=Fusobacteriaceae RepID=D1AL29_SEBTE Length = 358 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 123/320 (38%), Positives = 203/320 (63%), Gaps = 4/320 (1%) Query: 24 FEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYE 83 EA+E+AL A KK Y ++ + V+I+ +G+ F R +VDEV P EI+L+ A+ Sbjct: 28 LEAVETALLAAYKKNYGEKENAEVKINHDTGEVKVFSRKEIVDEVENPEYEISLDDAKNF 87 Query: 84 DESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVK 143 + +G VE +I + F R Q AKQ+++QKVRE E+ + + F+E E I+TG+V+ Sbjct: 88 KKRAKVGGVVELEINAEDFKRNAIQNAKQIVIQKVRECEKQNIYNNFKEKENSIVTGIVR 147 Query: 144 KVN-RDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 KV+ + ++ +D+ N EA+I +++ + F+ GDRV+ + V + + F++R Sbjct: 148 KVDEKGSLYIDI-NGLEAIIPEKELSDTDVFKQGDRVKVYIGKVEEGTKFTKTFISRKSE 206 Query: 203 EMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAV 262 EM+ +LF +E+PEI + VI IK+ AR+ GSR K+A+ ++D +D GAC+G G R+Q++ Sbjct: 207 EMIRKLFDLEIPEIEDGVIVIKSVAREAGSRTKVAIYSDDPNLDVKGACIGKGGMRIQSI 266 Query: 263 STELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED--KHTMDIAVEAGNLAQAIGR 320 EL GE+IDIVLW+++ FV NA+ PA+V S+ + ED + + V + L+ AIG+ Sbjct: 267 IDELKGEKIDIVLWNEDIRYFVKNALNPAEVISVEIIEDNGEEVAKVEVASDQLSLAIGK 326 Query: 321 NGQNVRLASQLSGWELNVMT 340 GQN RLA++L G ++++ T Sbjct: 327 KGQNSRLAAKLCGIKIDIFT 346 >UniRef50_Q2GDP1 N utilization substance protein A n=2 Tax=Neorickettsia RepID=Q2GDP1_NEOSM Length = 537 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 162/515 (31%), Positives = 261/515 (50%), Gaps = 54/515 (10%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N +I+ + +V+ ++ L + +F A+ LA K+ + + V+ID+KSG+ +R Sbjct: 10 NLQIVESINSVAEKEGLSPDTLFRAIGIELAHEIGKRQYGDHRIFVEIDKKSGEILVSKR 69 Query: 62 WLVVD-----------EVTQPTKE-----------------ITLEAARYEDESL--NLGD 91 LVV+ EVT + I L AR + S+ GD Sbjct: 70 LLVVEDSDKARMLEQMEVTTEESDDLPSSFRAEEKVHYDGVIDLSTARLKYPSIEHKAGD 129 Query: 92 YVEDQIESVTFDRITTQTAK----QVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNR 147 + + + S + I + K ++I VRE + ++ GEI+TG+VKK Sbjct: 130 IITEHLPSFSSGYIIARVMKAKLERLITSLVREKQYHC----YKGRVGEIVTGIVKK--- 182 Query: 148 DNISLDLGNNAEAVILR----EDMLPR------ENFRPGDRVRGVLYSVRPEARGAQLFV 197 S+D + ++I+ E +LP E+FRPG+RV+ V+ V Q+ + Sbjct: 183 ---SIDFKTGSRSIIVDIAGVEGLLPYSSLVKGESFRPGERVKCVIQKVEYSVVKPQILL 239 Query: 198 TRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGA 257 +RS + +LF +VPEI + V+EI+ ARD GSR+K+AV ++D+ IDPVGAC+GM G+ Sbjct: 240 SRSSGSFVAQLFSQQVPEIYDRVVEIRKVARDAGSRSKVAVFSSDRNIDPVGACIGMGGS 299 Query: 258 RVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQA 317 R+ AV EL GE+IDIV + ++ A F+ NA+ P I V+E+ +++ V +++ Sbjct: 300 RINAVVNELHGEKIDIVEYSNDTATFLANALKPIRPVKITVNEETKKIELVVPDESVSLV 359 Query: 318 IGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEG 377 IGR GQNV L S L G+ + V++ + K E + F + L+++E A +LV EG Sbjct: 360 IGRGGQNVYLLSSLLGYRVEVLSDAEFSKKKMEEFISGTARFVEALNVEEVIAQLLVTEG 419 Query: 378 FSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNL 437 FST+EE+A L IEG D+ E +R RA + + K ++L L Sbjct: 420 FSTVEEIADCNTSRLAFIEGFDKDIAEEIRSRAVEYVNEQPKRVRALAEKYKANPNMLAL 479 Query: 438 EGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEG 472 D L L + G+ LE +AE D+L ++ G Sbjct: 480 SSFDTGLLEVLFSSGLTDLEKVAELSCDELREVIG 514 >UniRef50_B0B9K5 N utilization substance protein A n=16 Tax=Chlamydiales RepID=B0B9K5_CHLT2 Length = 434 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 153/479 (31%), Positives = 249/479 (51%), Gaps = 52/479 (10%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNK+++A+ + + EK + R I A+ESAL A KK + +V V I+ ++GD + F Sbjct: 1 MNKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFC 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V++ P+KEI L+ AR D +G Y++ S F RI A+Q+I QK+R Sbjct: 61 EKQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRH 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRD-NISLDLGNNAEAVILREDMLPRENFRPGDRV 179 AER ++ +++R + EII+GVVK R N+ +DLG E ++ E + GD++ Sbjct: 121 AERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGK-VEGLLPARFYPKTEKHKVGDKI 179 Query: 180 RGVLYSVR-PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 +LY V+ E GA++ ++RS PE + +LF EVPE+ E +EI AR+ G R K+AV Sbjct: 180 YALLYEVQESENGGAEVILSRSHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAV 239 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 +++D + D VGA VGMRG+R++ + EL E+ID+V + + + N + P ++ I + Sbjct: 240 RSSDPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAI 299 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 ED + I V+ + A IG+ G N RL SQ+ G+EL V + + Sbjct: 300 LEDDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRMSE--------------- 344 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418 + K L+I L E + + LE+EG++ V+ L + + I Sbjct: 345 YNKLLEIQR-----------LQLAEFEDPRLDQPLEVEGINTLIVQNLEHAGYDTIRKIL 393 Query: 419 QAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEK 477 A A +L ++ G+ +LA+K+ LE +++ G EG DEK Sbjct: 394 LAS---------ASELASVPGISLELAYKI-------LEQVSKYG-------EGKVDEK 429 >UniRef50_D1PLN7 Transcription termination factor NusA n=2 Tax=Clostridiales RepID=D1PLN7_9FIRM Length = 357 Score = 224 bits (570), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 201/341 (58%), Gaps = 4/341 (1%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID-VRVQIDRKSGDFDTFR 60 N E + A+ E+ LP + + E +++A+ A KK YE E D V V ID + G F Sbjct: 5 NNEFFDALAALEKERGLPEDYLIEKIKAAIVIAVKKDYEVEDDNVVVDIDPEIGAFRASL 64 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V+EV P +++LE A+ +S +G + Q+++ F RI QTAK VI Q +RE Sbjct: 65 LRDIVEEVENPHTQVSLEEAQKVRKSYKVGQRMVTQLKTKEFGRIAAQTAKHVIRQGLRE 124 Query: 121 AERAMVVDQFREHEGEIITGVVKKVN--RDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 ER + + + E+IT V ++ R N+ LDLG AV+ R + +P E F G+ Sbjct: 125 GERNLQCSEMQSRAHELITATVVSIDPERGNVVLDLGKGGSAVLPRNEQVPGETFHEGET 184 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 V+ + V RG ++ ++R+ P ++ +F +EVPEI + +EIKA AR+ G+R K+AV Sbjct: 185 VQVYVVDVLATDRGPRVTISRTHPGLVKRMFELEVPEIYDGTVEIKAIAREAGARTKLAV 244 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-V 297 + + +DPVGAC+G RGARV+ + ELGGE+ID++ W ++ +F+ A++PA V + + Sbjct: 245 WSKNPDVDPVGACIGARGARVEKIVQELGGEKIDVIRWSEDITEFISAALSPAKVVKVEL 304 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 + + + + V L+ AIG GQNVRL + L+G+ +++ Sbjct: 305 LPGETKSCRVTVPDHQLSLAIGNKGQNVRLCAHLTGYNIDI 345 >UniRef50_C1QB15 Transcription termination factor NusA n=2 Tax=Brachyspira RepID=C1QB15_9SPIR Length = 498 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 137/445 (30%), Positives = 244/445 (54%), Gaps = 43/445 (9%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M + + ++ +S+EK + E + E + S + A KKKY +I+ + D K+ ++ Sbjct: 1 MFENVGTYLQQLSDEKDISVELLKEVIASTMELALKKKYGNDINFHIHFDNKNNP-TVYK 59 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYV---EDQIESVTFDRITTQTAKQVIVQK 117 VV+EV KEI+LE A+ D+ +NLGD V DQ+E+ F RI + AK QK Sbjct: 60 GANVVEEVRDKNKEISLEEAKKLDQDINLGDEVLILVDQVEA--FGRIESMVAKTTFFQK 117 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 + + E+ ++ ++F+ E +++ G ++ ++ I ++LG E + ++D PRE++ GD Sbjct: 118 ISDLEKNIIYNEFKRRENQLVNGYFQREHKGTIYINLGK-TEGELQKKDQSPREHYTVGD 176 Query: 178 RVRGVLYSV---RPEARG----AQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDP 230 R+R +Y V + + G ++ +TR+K + + +LF +E+PEI + IEIK R P Sbjct: 177 RIRAYIYKVQGGKDDRTGKEIPTKILLTRTKADFIKKLFELEIPEIADGTIEIKNVVRQP 236 Query: 231 GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAP 290 G + K+AV +N +DP+GAC+G +G R+Q++ E+ GE+ID+V W + +++ A+ P Sbjct: 237 GLKIKVAVVSNKPEVDPIGACIGQKGIRIQSIIKEIEGEKIDVVKWSKDIREYIAEAITP 296 Query: 291 AD-VASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK-- 347 A + I+ D +K I + L+ A+G++G NV+LASQL+G+ ++ T D++ Sbjct: 297 AKPIRIIITDPEKKEAMIIIPDEQLSLALGKSGYNVKLASQLTGYYFDIKTETDIKENPE 356 Query: 348 --------HQAEAHAAIDT--------------FTKYL----DIDEDFATVLVEEGFSTL 381 +Q + A +T F L IDE L++ G +++ Sbjct: 357 LLKDIVPLNQIFSDTAEETENSSEAEAAEAAEVFESNLYSLQGIDESIIKTLIDNGINSI 416 Query: 382 EELAYVPMKELLEIEGLDEPTVEAL 406 EEL + +E++E LD+ TV+ L Sbjct: 417 EELYNLSAEEIMEKTNLDKDTVDNL 441 >UniRef50_B1CB56 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CB56_9FIRM Length = 394 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 126/364 (34%), Positives = 222/364 (60%), Gaps = 22/364 (6%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 K+ + ++ ++ K + +E+I A+E AL A KK +D+ V I+R SG D F Sbjct: 14 KDFIEALDEINKTKGIDKEEIIVAVEQALVAAYKKDTRTNVDLVVNINRVSGAIDAFYSK 73 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 +V+EV +EI+L A D+S LG + I+ F RI TQ AKQ+I+QK++E+E Sbjct: 74 QIVEEVEDEDREISLHEALVLDKSAVLGASMVTHIDPKGFGRIATQNAKQLIIQKLKESE 133 Query: 123 RAMVVDQFREHEGEIITGVVKK--------------VNRDN--ISLDLGNNAEAVILRED 166 R ++ + F + + E++TGV+++ + N I +DLG AE ++ ++ Sbjct: 134 RNIISNTFMKKKDEMVTGVIQREEYKEMRKMVHGEPIKEQNRIIHIDLGK-AEGIMNSQN 192 Query: 167 MLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 + E++ PG R++ + V +G Q+ ++R+ P ++ LF EV EI + ++EIK+ Sbjct: 193 QVRSEHYHPGMRLKVYVSDVILTPKGPQIILSRTHPGLIRRLFEEEVAEISDGIVEIKSI 252 Query: 227 ARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVIN 286 +R+ GSR+K+AV T D +IDPVG C+G +G R+Q V E+G E+IDI+ + ++P +++ N Sbjct: 253 SREAGSRSKMAVYTADDQIDPVGTCIGPKGFRIQNVLNEIGDEKIDIIKYSEDPVEYIKN 312 Query: 287 AMAPADVASIVV-----DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 A+APADV + + ++ K++ + V+ L+ AIG++GQNVRLA++L+GW++++ + Sbjct: 313 ALAPADVLRVDILQTEEEDGKNSAAVVVDDSQLSLAIGKDGQNVRLAARLTGWKIDIKSK 372 Query: 342 DDLQ 345 +Q Sbjct: 373 SSVQ 376 >UniRef50_C7H125 Transcription termination factor NusA n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H125_9FIRM Length = 367 Score = 221 bits (562), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 203/345 (58%), Gaps = 2/345 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKEI+ + + E + ++++ + ++ ++ A K Y ++ VQID +G Sbjct: 1 MNKEIIEALGQIEKETGIAKDELIDMMKESVLHAFHKNYGEDSRAEVQIDEDTGGTYVIV 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V EV P E++L+ + DE G V+ +++ F RI QTAKQV +QK++E Sbjct: 61 SKDIVLEVENPETEVSLDEMKAIDERYEEGGVVQYTVDASKFGRIAAQTAKQVFLQKIKE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + +F+ EGEIITG V +V I + L N A+I + + E + GDR++ Sbjct: 121 REKQKIFSEFKGREGEIITGKVSRVTMRAIHVAL-NTTTAIIPLAEQIQGETYEVGDRIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + +V RG Q+ ++R P+ + ELF+ EVPEI ++I AR+ G+R KIAV + Sbjct: 180 ACIKTVEDRQRGPQIVLSRRSPQFVEELFKREVPEIENGTVKIMGIAREAGNRTKIAVYS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 +++ +D VGAC+G+RG R+ A+ +LG E++D+VLW+++P +FV A+ PA I++ E Sbjct: 240 DNEELDAVGACIGVRGTRIGAILDDLGYEKVDVVLWNEDPVKFVKEAIKPAFPDRIILLE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ 345 + + + V L+ AIGR GQNVRLAS+L ++V T D L+ Sbjct: 300 EDKVI-VIVADDELSLAIGRKGQNVRLASKLCKMSIDVKTKDGLK 343 >UniRef50_A3CQ21 N utilization substance protein A, putative n=42 Tax=Streptococcus RepID=A3CQ21_STRSV Length = 420 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 118/360 (32%), Positives = 210/360 (58%), Gaps = 16/360 (4%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE+L + +K + +E I +A+ +L +A +++Y Q ++ D KSGDF + Sbjct: 3 MSKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYT 62 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVDEV EI+L+ A + LGD ++ + F R+ Q+AKQ I++K+R+ Sbjct: 63 VREVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRK 122 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 RA+ + ++EHE EI++G V++ + I ++LG + EA + ++D +P E F DR+ Sbjct: 123 QTRAITYNTYKEHENEIMSGTVERFDNRFIYVNLG-SIEAQLSKQDQIPGEVFASHDRIE 181 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +Y V RG +FV+RS PEM+ L E+PE+ + +EI + +R+ G R K+AV++ Sbjct: 182 VFVYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRS 241 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGG--------------ERIDIVLWDDNPAQFVIN 286 ++ +D +G VG GA ++ ++++ E ID++ W +PA+F+ N Sbjct: 242 HNPNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYN 301 Query: 287 AMAPADVASIVVDEDKHTMDIAVEAGN-LAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ 345 A+APA+V ++ +E+ + + V N L+ AIGR GQNVRLA+ L+G+ +++ + + + Sbjct: 302 AIAPAEVDQVIFNEEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFE 361 >UniRef50_D2MPS9 Transcription termination factor NusA n=3 Tax=Erysipelotrichaceae RepID=D2MPS9_9FIRM Length = 569 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 125/344 (36%), Positives = 205/344 (59%), Gaps = 3/344 (0%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYE-QEIDVRVQIDRKSGDFDTFRR 61 K+ LA + V E+++P+ I EAL+ A+A A KK E +IDV +I+ K D F+ Sbjct: 6 KKWLAALTDVEEERSIPQSVILEALKEAMAKAYKKNEELPDIDVVAEINEKKKSIDLFQN 65 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 ++VV EV E++LE AR D++ +GD V +E + R AK V+ QK+REA Sbjct: 66 YVVVTEVEDDELEMSLEQARQLDKNAQVGDTVRRPVEIESMTRAAAMLAKNVMRQKIREA 125 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E+ V +++ E++ G ++ + ++LG A++L + +P E R R++ Sbjct: 126 EKEAVYNEYIGQLNEMVFGTIESIKDKFTLVNLGKTT-ALMLSGEQIPNERLRENQRIKV 184 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 V+ V E +GAQ+ V+R ++ LF EVPEI + V+EIKA AR+ G R K+AV ++ Sbjct: 185 VITEVNKEGKGAQVLVSRGTAMLVRRLFEAEVPEIFQGVVEIKAIAREAGERTKMAVLSH 244 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 +DP+GAC+G RG+RVQ + EL GE++DI W ++ V NA++PA++ +++ +ED Sbjct: 245 HPEVDPIGACIGPRGSRVQEIIKELKGEKVDIFEWSEDITSLVQNALSPAEIETVIPNED 304 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ 345 M I E L+ AIG+ G+N RLA +L+ ++++ T +L+ Sbjct: 305 GSLMVIVAE-DQLSLAIGKRGKNARLAVKLTNRKIDIKTRAELE 347 >UniRef50_UPI00016C59C1 transcription elongation factor NusA n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C59C1 Length = 497 Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 132/395 (33%), Positives = 214/395 (54%), Gaps = 39/395 (9%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 IL +V+ + E+ + ++ IF+ + SA+ A ++ ++ E V V ID +G Sbjct: 13 ILELVDKLHEERKIAKDVIFKGISSAIQVAAERHFQVEEGVFVSIDEATGHI-------- 64 Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 A+Y D+ L+ +T RI Q+AKQ+I+QK+REAE Sbjct: 65 --------------VAKYGDQELD----------PITLGRIAAQSAKQMIIQKIREAESD 100 Query: 125 MVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLY 184 V +F + E++ G V +V+ + LG + EA++ R + +P E G+RV+ ++ Sbjct: 101 TVFTEFTGKKYELLVGTVTRVDAGTAIVSLGKS-EALLPRSEQIPGETHHVGERVKAIIM 159 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 244 VR + ++ ++R+ PE + LF E+PEI E +I+I+A AR+ G R+K+AV + D + Sbjct: 160 EVRKQGNRVKIVLSRAHPEFVKALFEEEIPEIDERIIDIRAVAREAGYRSKVAVTSIDMK 219 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHT 304 +D VGACVG+RG+R++ V EL GERIDIV W+D + NA+ PA ++ + Sbjct: 220 VDAVGACVGVRGSRIKNVIEELNGERIDIVRWNDALQVLIPNALQPAQISDVFTYPKLGR 279 Query: 305 MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDL-QAKHQAEAHAAIDTFTKYL 363 + V L+ AIGR GQNVRLAS+L GW++ +MT D+L +A +AE F + Sbjct: 280 AIVLVTDDQLSLAIGRRGQNVRLASKLVGWDIEIMTHDELAEALERAERW-----FGQLP 334 Query: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGL 398 + L+EEGF + ++ + L E GL Sbjct: 335 HASPELTNALIEEGFLSYNDITMTDDEGLAEFTGL 369 >UniRef50_C6JIH8 Transcription elongation factor NusA n=2 Tax=Fusobacterium RepID=C6JIH8_FUSVA Length = 361 Score = 218 bits (554), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 124/341 (36%), Positives = 212/341 (62%), Gaps = 4/341 (1%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 K L ++ + EK + +E + +E AL A KK + +E +V V+I+R++GD + Sbjct: 7 KVFLEALDELEREKGISKESLLLTVEQALLAAYKKNHGEEENVEVEINRETGDVKLYEVK 66 Query: 63 LVVD--EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV+ ++ EI+L+ A+ + +GD V +I F R Q KQ+++QKVRE Sbjct: 67 TVVETEDLYDAAIEISLDDAQEIKKRAKVGDIVRIEINCEEFRRNAIQNGKQIVIQKVRE 126 Query: 121 AERAMVVDQFREHEGEIITGVVKKVN-RDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 AER + D+F+E E +II G++++++ + NI ++ + EA++ + P + +R G+R+ Sbjct: 127 AERQYIYDRFKEKENDIINGIIRRIDEKKNIFVEF-DGIEAILPTTEQSPADTYRVGERL 185 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 + L V + ++ ++R +L +LF +E+PEI +IEIKA AR+ GSRAK+AV Sbjct: 186 KVFLAEVEKTNKFPKIVISRKHEGLLKKLFELEIPEITSGLIEIKAVAREAGSRAKVAVY 245 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 ++D ID VGAC+G +G R++ + EL GE+IDIV+W ++ +FV ++PA V S+ V Sbjct: 246 SSDPNIDTVGACIGQKGLRIKNIVNELNGEKIDIVIWKESVEEFVSAVLSPAKVKSVEVI 305 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 ED++T + V+ L+ AIG+NGQN RLA++L+G +++ T Sbjct: 306 EDENTARVIVDNSQLSLAIGKNGQNARLAAKLTGMRVDIKT 346 >UniRef50_C3RL60 Transcription termination-antitermination factor n=6 Tax=Bacteria RepID=C3RL60_9MOLU Length = 443 Score = 217 bits (553), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 123/378 (32%), Positives = 217/378 (57%), Gaps = 15/378 (3%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKY-EQEIDVRVQIDRKSGDFDTFR 60 +K+ + + + EK + ++ E L+ ++ A KK Y + +VRV+I+ K+G F F Sbjct: 3 SKKFMDALNLLIEEKGIEKDVFLEMLKESIGKAYKKNYLNPDANVRVEINEKTGKFRLFE 62 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVD++ E++LE A+ + + +GD VE + + R+ KQ+ QK+RE Sbjct: 63 LRTVVDDLDDEDIELSLEEAQAINPNYQIGDVVETEADIEHIGRLAAIQTKQLFRQKIRE 122 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + ++F + + +IITG+V +V +++G A + +P E G ++ Sbjct: 123 TEKETLYNEFADKKDDIITGIVDRVEDKFAIVNIGKTG-AFLASNQQIPGEKLNEGQHLK 181 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V +G + V+R++P + LF +EVPE+ + +EIKA +R+PG R+K+AV T Sbjct: 182 VYVSDVDRGTKGTHIVVSRTEPSFVKRLFELEVPEVYDGTVEIKAVSREPGERSKVAVYT 241 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 +++ IDP+G+CVG +G+RV+ V EL GE IDI+LW +P F+ NA++P+DV + ++E Sbjct: 242 SNENIDPIGSCVGPKGSRVKNVVDELNGEMIDIILWSSDPVVFISNALSPSDVKWVSINE 301 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD--------DLQAKHQAEA 352 + H+ + V L+ AIG+ GQN RLA +L+GW++++ +V DLQ + E Sbjct: 302 ENHSALVVVPDDQLSLAIGKRGQNARLAVRLTGWKIDIKSVSEAVELGLIDLQTVNNTEE 361 Query: 353 HAAIDTFTKYLDIDEDFA 370 + +D +E+FA Sbjct: 362 SSPVDA-----SFEEEFA 374 >UniRef50_A6DKQ2 Transcription elongation factor NusA n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DKQ2_9BACT Length = 413 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 127/417 (30%), Positives = 238/417 (57%), Gaps = 8/417 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E++A+VE + EKA+ + +F+ +E A+A+ +K+ +E +++V+I+R++GD Sbjct: 1 MNSELVAMVEYLEQEKAIDKAILFDLIEDAMASVYEKEVGEESEIKVEINRRTGDVTIIA 60 Query: 61 RWLVVDEVTQPTKEITLEAAR--YEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118 ++ +EV EI L +A+ Y DE + +GD V+ ++ RI Q +Q I+Q++ Sbjct: 61 DVVIAEEVFDKRHEIDLASAQKEYGDE-VAIGDTVKWTLQQDQMSRIAAQNTRQAIMQRL 119 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 R E+ VV+++ + GE+I+G V+ ++ + +D G A+ + + D +PRE F GD Sbjct: 120 RTFEKERVVEEYSDMVGELISGTVRHFEKNELIVDFGR-AQGGLGKMDRVPRERFDNGDH 178 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 + +L + G + ++R+ +++ +LF EV EI ++EIKA AR G R KIAV Sbjct: 179 ITALLKEIDERKSGPSIVLSRTDAKLVTKLFEREVTEITNGLVEIKAVARKAGFRTKIAV 238 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 ++ +DPVGAC+G+RG+RV+ + EL E++DI+ + ++ ++V A P + + + Sbjct: 239 ASDS--LDPVGACIGIRGSRVKTICQELNNEKLDIIGYSEDEEEYVREAFKPNPIEEVEI 296 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV-MTVDDLQAKHQAEAHAAID 357 D+D + + V + +GR+G+N+RL +L W++ V V D + A Sbjct: 297 DQDGRLIKLLVSEESYKSIVGRDGENIRLTEELMDWDIEVEKYVYDTEITFDEHIQEAYQ 356 Query: 358 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 T K ++DE A ++++ G+ +LE ++ +L+E G++ + E AK+ L Sbjct: 357 TMMKLPNMDEGKARMMIDGGYLSLEGVSEASTDDLVEA-GIEADHATEIIEYAKSRL 412 >UniRef50_C2ES49 Transcription termination factor NusA n=1 Tax=Lactobacillus vaginalis ATCC 49540 RepID=C2ES49_9LACO Length = 410 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 134/413 (32%), Positives = 220/413 (53%), Gaps = 55/413 (13%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N E++A ++ + EK + +E + EALE AL A K+ Y E +V V D +G+ + Sbjct: 7 NTEMIAALDYLEKEKGIKKEIVIEALEQALELAYKQNY-GEKNVEVDFDGVTGNIKVYAV 65 Query: 62 WLVVDE---VTQPTKE-ITLEAARY--EDESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 + D V + E ++L AR + ++GD + +++ F RI QTAKQV++ Sbjct: 66 KTITDNEDLVEEDDNEYMSLADARKLPHGQGYDVGDEIREEVTPRDFGRIAAQTAKQVVM 125 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRP 175 Q++RE ER ++ ++++ +E EIITG V + ++ +DLG+ E + D +P E++ Sbjct: 126 QRLREEERKIIYNKYKTYENEIITGEVSREDKRFTWVDLGDGVEGAMGYRDKMPNEHYHI 185 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 DR++ + V + G Q+FV+R+ PE+L LF EVPEI + + I+ AR+ G RAK Sbjct: 186 HDRIQVYVSKVNDDRHGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 +AV +ND +DPVG CVG RG+RVQA+ EL GE +DIV + +PAQF+ NA+ PA+V Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAQFIANALNPAEVLD 305 Query: 296 IVVDE----------------------------------------DKHTMDIAVEAGNLA 315 ++ +E ++ + + V L+ Sbjct: 306 VIFNEPEAPVTEEQPEENSTDDSVTETSDTSTEAESTEEEPVATTEERSCTVVVPDSQLS 365 Query: 316 QAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDED 368 AIG+ GQN RLA++L+ +++++ K +E DT + D ED Sbjct: 366 LAIGKRGQNARLAARLTKYKIDI--------KPASEMEDNTDTLEEETDASED 410 >UniRef50_C9RKT3 NusA antitermination factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKT3_FIBSS Length = 407 Score = 214 bits (545), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 137/349 (39%), Positives = 196/349 (56%), Gaps = 15/349 (4%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 +L V++ V +K++ I +AL+ AL +A +K E + V ID ++ + F V Sbjct: 9 LLDVLKEVVEDKSVDDSVILDALKKALISAARKYLHIEKKINVDIDMETNEVHVFLNVEV 68 Query: 65 VDEVTQPTKEITLEAARYEDESLNL-------------GDYVEDQIESVTFDRITTQTAK 111 VD+ +T E DE L GD + ++ + +F R QTAK Sbjct: 69 VDDYPDYDPNMTAEEVAEMDEGYMLVDEARDFNEDAQAGDSLYMELPTSSFGRQAIQTAK 128 Query: 112 QVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRE 171 Q++ Q +R AE ++D +R G II G V ++ + N+ +DLGN EA + + +P E Sbjct: 129 QLLTQHIRSAECQRIMDIYRSRIGTIINGTVLRLEQRNVIVDLGNKIEAELPAREQIPHE 188 Query: 172 NFRPGDRVRGVLYSVRPEAR-GAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDP 230 G V+ V+ V + GAQ+ ++RS + L L R EVPEI E +EIKA ARD Sbjct: 189 RLTQGASVKAVIARVEESTKSGAQVILSRSNADFLKALLRQEVPEIYEGTVEIKAVARDS 248 Query: 231 GSR-AKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMA 289 +R AKIAV + D++IDPVGACVGM+GARVQ + ELG ERIDIV WD+N FV ++A Sbjct: 249 KNRRAKIAVYSRDEKIDPVGACVGMKGARVQTIVRELGNERIDIVHWDENFDVFVQRSLA 308 Query: 290 PADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 PA V + D + I V+ NLAQAIG+ GQNV LA +L +L+V Sbjct: 309 PASVLKMFPVPDTDRIVIIVDDENLAQAIGKGGQNVELAGRLVDRKLDV 357 >UniRef50_C7NAM6 NusA antitermination factor n=6 Tax=Fusobacteriaceae RepID=C7NAM6_LEPBD Length = 414 Score = 208 bits (529), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 132/341 (38%), Positives = 216/341 (63%), Gaps = 6/341 (1%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 L ++ + EK + +E++ E +E+AL A KK Y ++ +V+V I+R SGD F + L+ Sbjct: 9 FLEALDELEKEKGILKEELLETIETALLAAYKKNYGEKDNVKVTINRNSGDVKVFSQRLI 68 Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 V+ V P +EI+LE A + LGD ++ +I + +F R Q AKQ++VQKVRE E+ Sbjct: 69 VENVENPDEEISLEDAISVKKRAKLGDILDLEINAESFKRNAIQNAKQIVVQKVRECEKR 128 Query: 125 MVVDQFREHEGEIITGVVKKVN-RDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 + ++F+E E I++ V+K + + N+ +D+ N EA++ +++ P +NF +RV+ + Sbjct: 129 NIFNKFKEIENSIVSANVRKTDEKGNLYIDI-NGLEAIVPFKELSPTDNFVQNERVKIYV 187 Query: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 +V + + FV+R E+L L +EVPEI E++IEIK AR+ GSRAK+AV + D+ Sbjct: 188 GNVEESTKFTKTFVSRKSEELLRGLLELEVPEIEEKIIEIKNIAREAGSRAKVAVYSEDE 247 Query: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADV--ASIVVDED 301 +D GAC+G G R+Q + EL GE+IDIVLW+++ +FV NA+ PA+V IV E+ Sbjct: 248 NLDVKGACIGRNGMRIQNIIDELRGEKIDIVLWNEDIREFVKNALNPAEVLLVEIVEGEE 307 Query: 302 KHTM--DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 ++T + V L+ AIG+ GQN RLA++L G ++++ T Sbjct: 308 ENTKIAKVLVAENQLSLAIGKKGQNSRLAARLCGVKIDIHT 348 >UniRef50_Q0H8S9 NusA n=2 Tax=Spiroplasma RepID=Q0H8S9_SPIKU Length = 483 Score = 207 bits (526), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 201/346 (58%), Gaps = 2/346 (0%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 ++L+ ++ + +EK + R+ I ++++ + A +K ++ E + V+I +K+G + Sbjct: 18 KLLSTIDEIVSEKQISRDLILDSIKEGIRKAYEKHFDPEATIIVEIHQKTGQIKVEKELT 77 Query: 64 VVDEVTQPTKEITL-EAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 VV +V EI L EA E + + D V +Q+ S F R+ Q+I Q+++EAE Sbjct: 78 VVKKVEDDLLEIGLNEAKEKYGEQITIDDKVYEQVNSEEFSRLAIFQVGQIIKQQIKEAE 137 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 + + D++ +G ++TGVV + +++ A I R++++ E+F G + + Sbjct: 138 KDSIFDEYIIQKGHLMTGVVIAAEEKYLLVEVERTF-AYIPRKNLIFSEHFEVGQPITFL 196 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND 242 V Q+ +R+ + L L E+PEI E+VIE+KA ARDPG R+KIAV + + Sbjct: 197 AEDVVKSKNAGQIIGSRTSNDFLYSLLEREIPEIFEQVIEVKAIARDPGRRSKIAVYSTN 256 Query: 243 KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK 302 + IDP+GACVG +G+R+ V+ EL E+IDI +++DN QF+IN+++P V SI ++++ Sbjct: 257 ENIDPIGACVGSKGSRINKVTAELQDEKIDICIYNDNSQQFIINSLSPVKVISITTNDEE 316 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKH 348 D+ V L+ AIG+ G + +L ++L+ W+LN+M+ + K Sbjct: 317 KEADVVVPDEQLSLAIGKGGSSAKLVAKLTKWKLNIMSYSEALTKQ 362 >UniRef50_B0SH17 Transcription elongation factor n=6 Tax=Leptospira RepID=B0SH17_LEPBA Length = 466 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 116/345 (33%), Positives = 201/345 (58%), Gaps = 10/345 (2%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKK--YEQEIDVRVQI----DRKSGDFDT 58 + ++ +K+L RE + + +L A +KK E E D R Q+ D K+ + Sbjct: 12 LFEAIQQFCQDKSLDRELVLGVIRDSLLAAYRKKVGLEAETDDRCQVEFGSDNKNEIIIS 71 Query: 59 FRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118 R +V ++ P E++LE A+ D + +G + + R+ + AKQ++ Q++ Sbjct: 72 VLRDVVAEKTINPL-EVSLEDAQKIDPKIEVGSQIRVFEKPQDLSRVLSSQAKQMVFQRL 130 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 R+ E+ ++ +++ EGE+ G ++ +D +S+DLG E ++L++D P E +R GDR Sbjct: 131 RDMEKELLYQEYKSKEGELTHGYFQRWKKDIMSIDLGK-VEGIMLKKDQNPGEKYRQGDR 189 Query: 179 VRGVLYSV--RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 ++ ++ V RP + ++R+ + + +LF +E+PE+ + ++EI+ AR P R K+ Sbjct: 190 LKAIISRVELRPREPMPVITLSRASGDFVKKLFEMEIPEVYDGIVEIRDVARIPSYRTKV 249 Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296 V T+ +DPVGACVGM+G R+QA+ ELG ERIDIVL D P+ F+ NA++PA + Sbjct: 250 VVTTSKSDVDPVGACVGMKGVRIQAIVRELGNERIDIVLHSDEPSIFIANAISPAKPVEV 309 Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 VD + + V +L+ AIG NG NV+L SQLSG+++++ TV Sbjct: 310 HVDRKRGDALVIVPDESLSLAIGINGSNVKLVSQLSGFKIDIKTV 354 >UniRef50_Q04GN3 Transcription elongation factor n=18 Tax=Lactobacillales RepID=Q04GN3_OENOB Length = 473 Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 116/364 (31%), Positives = 216/364 (59%), Gaps = 6/364 (1%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR-R 61 +E+ + ++A+ EK + +E +L+ L TA KK +E E +V V +D + +F+ + + Sbjct: 7 RELFSALQALQAEKGISQEDAITSLKDTLVTAYKKNFEGETNVEVDVDPEKQEFNLLQIK 66 Query: 62 WLVVD-EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 ++ D ++ P EI L+ AR + + GD ++ +I F R+ Q+ K Q +RE Sbjct: 67 EVIPDGDMIDPYSEIYLKDAREINSAYEAGDQIKFEINPRDFGRLAAQSGKNKSTQTIRE 126 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + ++ E EI++ V + ++ + + + + EA + +D +P E ++ GD ++ Sbjct: 127 KEKEAIHARYEGFEHEIVSARVAREDQRFLWVTMPDGQEAAMGDKDRIPGETYKTGDPIK 186 Query: 181 GVLYSVRPEA-RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 ++ V A RG Q++V+R+ PE++ LF EVPE+ + + I++ AR+ G R+K+AV+ Sbjct: 187 VLINRVEDSATRGPQIYVSRTSPELVKRLFEQEVPEVYDGTVVIESIAREAGDRSKVAVR 246 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 T D +DP+G VG RG+RVQAV EL GE +DIV W ++ AQ++ NA+ PA+V ++ Sbjct: 247 TTDSNLDPIGTLVGTRGSRVQAVVNELHGENMDIVEWVEDEAQYIANALNPAEVVDVIFS 306 Query: 300 EDK-HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 D + + + V L+ AIG+ GQN RLA++L+ +++++ + + QA++ + A ++ Sbjct: 307 PDNDNEVTVIVPDYQLSLAIGKRGQNARLAAKLTKFKIDIKS--ETQAENDPQLQAILEE 364 Query: 359 FTKY 362 KY Sbjct: 365 SAKY 368 >UniRef50_C7LXY2 NusA antitermination factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LXY2_ACIFD Length = 330 Score = 204 bits (519), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 197/350 (56%), Gaps = 25/350 (7%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N E++ +E ++ EK L E + E+L +ALA A K++ + V+ID SG + Sbjct: 5 NPEVMDALEVIAREKGLSVETLLESLANALAAAYKRRPGAAEEAYVEIDPASGTIRVICQ 64 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 L DE +E +ED + G RI Q AKQV++QK+REA Sbjct: 65 EL--DENGTVVRE-------WEDTPRDFG-------------RIAAQAAKQVMLQKIREA 102 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER +++ EG+++TG+V +++ LDLG EA++ + E + R++ Sbjct: 103 EREQKYEEYAGREGDVVTGIVSQIDPRFTLLDLGK-IEAIMPHSESPSNERYSVNQRLKA 161 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + VR +G Q+ V+R+ P ++ LF +EVPEI V+E+KA AR+PG R KIAV +N Sbjct: 162 YIVEVRRSIKGPQIVVSRTHPGLVRRLFEVEVPEIASGVVEVKAIAREPGHRTKIAVWSN 221 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D+ +DPVGACVG RG+RV V EL GE++DIV + ++ A+FV A+ PA S V E Sbjct: 222 DRSVDPVGACVGARGSRVHTVVNELLGEKVDIVPFSEDLAEFVERAIVPAHALSATV-EG 280 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAE 351 + + + V L+ AIGR GQN RLA++L+G L + +++ + + + Sbjct: 281 RDAL-VVVPDDQLSLAIGREGQNARLAARLTGTHLEIRPQSEVEGRQEGQ 329 >UniRef50_D1BJ68 Transcription termination factor NusA n=5 Tax=Actinomycetales RepID=D1BJ68_SANKS Length = 365 Score = 201 bits (510), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 204/346 (58%), Gaps = 15/346 (4%) Query: 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV- 64 ++ + + E+ + + + A+E ALA A ++ + RV+IDRKSG + R + Sbjct: 5 MSALRLLEREREISLDVLVSAIEQALALAYQRTPGAQRTARVEIDRKSGHVTVWAREDIE 64 Query: 65 VDEVTQPTKEITLEAARYEDESL-------NLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 +E +P +A ED+ LG +D F RI T TA+QVI+Q+ Sbjct: 65 TEEPVEPRYSDGDDADGTEDDEAPTTRVVRTLGPEFDDT--PTDFGRIATSTARQVIMQR 122 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDN--ISLDLGNNAEAVILREDMLPRENFRP 175 +R+AE V+ QFR+ EGE+++G++++ RD + +D+G EAV+ + +P E + Sbjct: 123 LRDAEDDQVLGQFRDKEGELVSGIIQQ-GRDPRVVLVDVGGT-EAVLGAHEQVPTEKYTH 180 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 G+R+R + V +G Q+ ++R+ P ++ +LF +EVPE+ + +EI A AR+ G R K Sbjct: 181 GERLRSYVLDVSRGMKGPQISLSRTHPNLVRKLFEMEVPEVADGSVEIVAIAREAGHRTK 240 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 +AV+ ++ GAC+G G+RV+AV EL E+IDIV W+D+PA FV +A++PA V S Sbjct: 241 MAVRARVSGLNAKGACIGPMGSRVRAVMAELHDEKIDIVDWNDDPAAFVASALSPATVIS 300 Query: 296 I-VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 + VVD D + V L+ AIG+ GQN RLA++L+GW +++ + Sbjct: 301 VTVVDADARAARVIVPDFQLSLAIGKEGQNARLAAKLTGWRIDIRS 346 >UniRef50_Q2S1N6 N utilization substance protein A n=5 Tax=cellular organisms RepID=Q2S1N6_SALRD Length = 546 Score = 197 bits (502), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 124/399 (31%), Positives = 217/399 (54%), Gaps = 21/399 (5%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 ++++++ ++ K + R+ + +E +K+Y + + + K GD Sbjct: 3 SEDLISSFGEIARSKDMDRDTLQIIVEDVFRAMLRKRYGSDEAFEIIFNPKQGDIQILHI 62 Query: 62 WLVVD--EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 VV EV P EI A+ D+ +GD V ++ F R TA+Q Q++R Sbjct: 63 QEVVGDWEVEDPVTEIKESEAKKIDDGFAVGDEVAGGLDVSEFGRRAVMTARQTFRQRIR 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 + E+ V ++ E G+I+ G + +V R L + + E V+ R++ +P +++R G+ + Sbjct: 123 DIEKEQVYQEYTELIGDIVVGEIYQVRRHETLL-MHEDTELVLPRDEQIPGDHYRKGNML 181 Query: 180 RGVLYSVRPEARG-AQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 R V+ VR +A Q+ V+R+ P + LF +EVPE+ + ++EIK AR PG RAK+AV Sbjct: 182 RTVVKEVRRDAGSDPQVVVSRTSPVFMERLFEVEVPEVHDGIVEIKKVARIPGDRAKVAV 241 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 +++D+++DPVGACVG++G R+ AV EL E ID++ W D+P + + A++PA+ ++ + Sbjct: 242 ESHDEKVDPVGACVGVKGVRINAVVRELSDENIDVMQWSDDPQELIARALSPAEPTNVSL 301 Query: 299 --DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356 DED + V A ++QAIG+ G N++LASQL+G+E++V + I Sbjct: 302 NQDEDPPRARVEVPADEVSQAIGKRGVNIKLASQLTGYEIDV--------------YREI 347 Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEI 395 + +DI E F L EE L+ + K +LE+ Sbjct: 348 PADEEDIDI-EQFGDELTEETIGKLKRIGCDTGKAVLEL 385 >UniRef50_Q1AW56 NusA antitermination factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AW56_RUBXD Length = 381 Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 114/338 (33%), Positives = 190/338 (56%), Gaps = 31/338 (9%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN +L+ + + EK +P E + LE +L A +++ V +DR++GD Sbjct: 1 MNTALLSALHEIETEKGIPFETVKRVLEESLLAAYREREGAVEGAEVVLDRETGDL---- 56 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V + ++IT E D+ F RI +Q +Q++ E Sbjct: 57 ------RVMKDGEDITPE------------DF--------DFTRIAASLMRQNFMQRLNE 90 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 +V ++ E G+++TG+V++ +R +DLG EA++ + +P E + G R++ Sbjct: 91 VHNQQLVKEYGERIGDVVTGIVQQAHRRMTIIDLGR-VEALLPASEQVPGERYENGQRLK 149 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 L ++ RG + V+R +L LF +EVPEI + ++EIKA AR+ G R+K+AV + Sbjct: 150 VYLLDIKEAGRGPSIIVSRRHEGLLRGLFELEVPEIYDGLVEIKAVAREAGLRSKVAVWS 209 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 N+ IDPVGACVG RG+RV+AV +EL E+IDI+ WD +PA+F+ A++PA V + +DE Sbjct: 210 NEPGIDPVGACVGPRGSRVRAVVSELRNEKIDIIQWDPDPARFIAKALSPARVREVYLDE 269 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 ++ ++ V L+ AIGR GQN RLA +L+ W++++ Sbjct: 270 EEKQAEVIVPDDQLSLAIGREGQNARLAVKLTDWKIDI 307 >UniRef50_B2S4C9 N utilization substance protein A n=4 Tax=Treponema RepID=B2S4C9_TREPS Length = 485 Score = 194 bits (493), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 137/468 (29%), Positives = 236/468 (50%), Gaps = 25/468 (5%) Query: 9 VEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEV 68 + + EK L + F+ +E L A K ++ + + V + + R VV+EV Sbjct: 9 IRKYAQEKGLDEDFAFKIVEQTLKAAYKTTFKTDENAVVTFGEER--VCIYARKRVVEEV 66 Query: 69 TQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVD 128 E+ L A D + +L V ++ES F R + Q A Q I + RE ++ + Sbjct: 67 YDRVSEVDLSTALELDPTTSLDSEVLVELESEDFKRGSVQAAVQRITELSREIQKDALYA 126 Query: 129 QFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVR- 187 +++ EGEII G ++ ++I +DLG E ++ + LP++++R DR++ ++ VR Sbjct: 127 EYKSKEGEIIVGYYQRARNEHIYVDLGK-VEGLMPKSHQLPQDDYRQNDRIKSLVREVRK 185 Query: 188 -PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRID 246 P++ QL ++R+ + EL +EVPEI + ++E+ R+PG R KIAV + +D Sbjct: 186 HPKSSVVQLILSRTDSAFVKELLAVEVPEIYDGIVEVAKIVREPGYRTKIAVTSRRDDVD 245 Query: 247 PVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV-DEDKHTM 305 PVGACVG RG R++ V EL E+ID++ + +P F+ NA++PA+V ++VV DE+K + Sbjct: 246 PVGACVGPRGIRIRMVIKELNDEKIDVLEYSPDPVIFIKNALSPAEVLNVVVLDEEKRSA 305 Query: 306 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD-----DLQAKHQAEAHAAIDT-- 358 V L+ AIG+ G NVRLA++L W ++V T D+ + A D Sbjct: 306 LAIVAESQLSIAIGKQGLNVRLANRLVDWNIDVKTESQFEEMDVYTDTRRAAENLFDNDY 365 Query: 359 -----FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA 413 F+ Y+ + +L + G ++ L + + L +EG+DE V+ L + Sbjct: 366 QEESEFSSYVGFTPELIKILQDNGIQDVQTLVDLGEEGLRALEGMDEAHVQELLAAIEEN 425 Query: 414 LATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAE 461 + + +E S+ + G D D A + GV D++E Sbjct: 426 FEVVEEGEEASVTSSPGT-------GGDEDQALQCPECGVRITTDMSE 466 >UniRef50_C7NH16 Transcription termination factor NusA n=55 Tax=Actinobacteria (class) RepID=C7NH16_KYTSD Length = 357 Score = 194 bits (493), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 119/357 (33%), Positives = 199/357 (55%), Gaps = 25/357 (7%) Query: 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV 65 +AV+ V E+ +P + + ALE+AL A + + + RV++DR+SG + R Sbjct: 5 MAVLREVEREREIPLDVLVPALETALLQAYQHEAGGRRNARVELDRRSGQVVVWAR---- 60 Query: 66 DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 125 LE + D ED F RI T +QVI Q++R+ E Sbjct: 61 ------EDAPVLEDGTRGEAGPEFDDTPED------FGRIGAFTVRQVIRQRLRDLEDEA 108 Query: 126 VVDQFREHEGEIITGVVKKVNRDN-ISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLY 184 V+ F+ EG+I+ GV+++ N + I +DLG E ++ + +P E+++ GDR+R + Sbjct: 109 VLGDFKGKEGDIVAGVIQQSNDPHAIHVDLGT-VEGLLGTSEQVPLEDYKHGDRIRCYVI 167 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 244 + +G + ++R+ P ++ +LF +EVPE+ + + I++ AR+ G R+K+AV+ Sbjct: 168 HAKRGMKGPLIGLSRTHPNLVRKLFALEVPEVADGTVRIESIAREAGHRSKMAVRATQPG 227 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKH 303 ++ G+C+G G RV+AV EL GE+IDIV +DD+P +FV A++PA V S+ VVDE Sbjct: 228 VNAKGSCIGPMGGRVRAVMNELQGEKIDIVDYDDDPRKFVAAALSPAKVTSVTVVDEKTR 287 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + + V A L+ AIG+ GQN RLA++L+GW + D+Q H A+ +I + Sbjct: 288 SARVTVPAHQLSLAIGKEGQNARLAARLTGWRI------DIQPDHTADEAGSIGAVS 338 >UniRef50_B8DW42 N utilization substance-like protein n=11 Tax=Bifidobacterium RepID=B8DW42_BIFA0 Length = 358 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/353 (35%), Positives = 200/353 (56%), Gaps = 18/353 (5%) Query: 9 VEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEV 68 + A++ E+ + E + AL AL A K RV++D ++G F + R DE+ Sbjct: 8 IHALAQEQGIDAETVDAALSEALRLAYLKMPHAAKYARVELDPRAGSFTIWAR----DEI 63 Query: 69 TQ-PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVV 127 Q PT++ A LG+ +D F R+ TA+QVI Q R+AE V Sbjct: 64 PQEPTEDNPHPAP-------ELGEEYDDTPHD--FGRLAASTARQVIQQLFRKAEDDRVF 114 Query: 128 DQFREHEGEIITGVVKKVNRD--NISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYS 185 F G++ITGVV++ +D N+ + +G+ EA++ R + +P E +R G+R+R + + Sbjct: 115 GAFSGQRGKLITGVVQQDVKDPANVHVAVGD-VEALLPRREQVPGERYRHGERIRVYVTT 173 Query: 186 VRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRI 245 V +G ++ V+RS PE++ LF EVPE+ + I A AR+ G+R KIAV+ N I Sbjct: 174 VARGLKGPEIIVSRSHPELVRRLFEREVPELASGAVSIMAIAREAGARTKIAVRANTPGI 233 Query: 246 DPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTM 305 +P GA +G G+RV+AV LG E+IDI+ W NPA+F+ A++PA V+ + V +K+ Sbjct: 234 NPKGALIGPGGSRVRAVMENLGSEKIDIIDWSANPAEFIAAALSPAVVSDVQVISEKNQT 293 Query: 306 DIA-VEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357 IA + L+ AIG+ GQN RLA++L+GW++ + + AK + +A A D Sbjct: 294 AIAFINDEQLSLAIGKEGQNARLAAKLTGWKIGIESNSAHAAKLREQAAKAAD 346 >UniRef50_D2QL25 NusA antitermination factor n=14 Tax=Bacteria RepID=D2QL25_9SPHI Length = 414 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/394 (29%), Positives = 220/394 (55%), Gaps = 8/394 (2%) Query: 16 KALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPT--- 72 K + R + LE T +KKY + + V I+ +SGD + +R +VD+ ++ Sbjct: 17 KNIDRPTMIAILEDVFRTMIRKKYGTDENFDVIINAESGDLEMWRTREIVDDNSEDIWDY 76 Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 +I L AR + +G+ V ++++ F R QTA+Q ++QK+++ E+ ++ ++++ Sbjct: 77 DKIPLAEARKIQDDFEVGEQVAEEVKLDDFGRRVVQTARQTLIQKIKDMEKELLYQKYKD 136 Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARG 192 G+++T V ++ + I L G + E + R + + ++ +R G+ V+ V+ V Sbjct: 137 QVGDLVTAEVYQLLKHEIILVDGESNELSLPRTEQISKDRYRKGEPVKAVISRVDMLNGT 196 Query: 193 AQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACV 252 ++ ++R+ P L LF IEVPEI + +I I+ R+PG RAK+AV++ D RIDPVGACV Sbjct: 197 PKIVLSRTSPVFLERLFEIEVPEIYDGLISIRKIVREPGERAKVAVESYDDRIDPVGACV 256 Query: 253 GMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAG 312 GM+G+R+ + ELG E ID++ + +N + A++PA ++S+ +D + + + ++ Sbjct: 257 GMKGSRIHGIVRELGNENIDVINYTENLELLISRALSPAKISSMQIDRETKRVSVFLKPD 316 Query: 313 NLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATV 372 ++ AIG+ GQN++LA +L E++V ++ Q E +D +IDE Sbjct: 317 QVSLAIGKGGQNIKLAGRLVDMEIDVFRDNEGQ-----EDDEDVDLMEFSDEIDEWMIQE 371 Query: 373 LVEEGFSTLEELAYVPMKELLEIEGLDEPTVEAL 406 L + G T + + + +EL+ L+E TVE + Sbjct: 372 LRKVGLDTAKSVLALNKEELVRRTDLEEDTVEEI 405 >UniRef50_C6X2U0 Transcription termination protein NusA n=2 Tax=Flavobacteriaceae RepID=C6X2U0_FLAB3 Length = 415 Score = 191 bits (485), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 125/421 (29%), Positives = 223/421 (52%), Gaps = 29/421 (6%) Query: 6 LAVVEAVSN---EKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTF-RR 61 LA++EA + EK++ + + +E +L T +K+++ + V ++ GDF F + Sbjct: 4 LALIEAFGDFKEEKSISKIDLMAIIEDSLKTLLRKRFDSDDHFDVIVNPDKGDFQIFLNK 63 Query: 62 WLVVDEVTQPTK-EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V D++++ EI + A+ D + +G+ +I R + T KQ++ K++E Sbjct: 64 TIVEDDMSEDDDLEIEISEAKKIDPTFEVGEEFTIEIPIEGLGRRSILTLKQILATKLQE 123 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 A++ ++FR+ GEI+ G V + ++ L + E ++ +E+ +P + F+ G+ +R Sbjct: 124 HNNAVLYEEFRDKIGEIVVGEVHHIRHKHVILLDDEDNEFILPKENQIPSDFFKKGENIR 183 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 ++ SV + Q+ V+R+ P+ L +L +E+PEI + I +K R PG +AKIAV Sbjct: 184 TIVESVDFKGSKPQIIVSRTAPKFLEKLLELEIPEIQDGTIILKKVVRIPGEKAKIAVDA 243 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D RIDPVGACVG++G+R+ V EL E ID++ W NP V A+ V I ++E Sbjct: 244 YDDRIDPVGACVGVKGSRIHGVVRELKNENIDVIQWSKNPEIMVKRALGNVTVNKIEINE 303 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV----DDLQAKHQAEAHAA- 355 + + +++ IG+ GQN+RLAS LSG+E++V DD++ K A + A Sbjct: 304 ETKYAMVYTPVEEISRVIGKQGQNIRLASWLSGYEIDVHRESAEDDDVELKEFAGSDAGD 363 Query: 356 -----IDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 410 ID F K G +T + + + LL++ L+E T+E +++ Sbjct: 364 IEQWIIDEFNKV--------------GLTTAKSVLDKDTEALLKMVDLEEETIEEVKQIL 409 Query: 411 K 411 K Sbjct: 410 K 410 >UniRef50_D2NNU7 Transcription elongation factor n=12 Tax=Actinobacteridae RepID=D2NNU7_9MICC Length = 365 Score = 191 bits (484), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 115/337 (34%), Positives = 190/337 (56%), Gaps = 25/337 (7%) Query: 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV 65 L + A++ +++L E++F +E+AL A K+ R ID +G+F L Sbjct: 9 LGALRALAKQRSLVMEELFTLVENALLLAYMKQPGAIKGSRAVIDHTTGEFVILAPEL-- 66 Query: 66 DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 125 DE Q E ++D N G RI T +QV+ Q++R+AE A Sbjct: 67 DEDNQKIDE-------FDDTPNNFG-------------RIAAATVRQVLSQRLRDAEDAS 106 Query: 126 VVDQFREHEGEIITGVVKKVNRDN-ISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLY 184 V+ +F++ EG +++GV+++ N + +DLG EAV+ + +P E + G R+R L Sbjct: 107 VLGEFKDREGTLVSGVIQQGNNPRMVQVDLGT-VEAVLPSNEQVPGEKYPHGSRLRAYLV 165 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 244 R +G + V+RS P +++ LF EVPEI E ++ I + AR+ G R+KIAV + Sbjct: 166 EARRGPKGPSIVVSRSHPNLVLRLFEHEVPEISEGLVAINSIAREAGHRSKIAVSAKNPT 225 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV-DEDKH 303 I+ GAC+G GARV+AV+ EL E+IDIV + +PA F+ A++PA V +++ + ++ Sbjct: 226 INAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPATFIAAALSPAKVTEVIIANPREY 285 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 + V L+ AIGR GQN RLA++L+GW +++++ Sbjct: 286 SARAVVPDDQLSLAIGREGQNARLAAKLTGWRIDILS 322 >UniRef50_D0J8H0 Transcription elongation factor NusA n=36 Tax=Bacteroidetes RepID=D0J8H0_BLASP Length = 419 Score = 191 bits (484), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 104/340 (30%), Positives = 190/340 (55%), Gaps = 2/340 (0%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N+ ++ +EK + R + LE ++ +KKY+ + + ++ GD + +R Sbjct: 3 NEALIDSFSVFKDEKNIDRASLMAILEESIRCVLRKKYDSSKNYDIIVNPDQGDLEIWRN 62 Query: 62 WLVVDE--VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 +VV + V KEI L AR + +G+ V +++E + R + +Q ++ K+ Sbjct: 63 RIVVQDGTVKDVNKEIELSTARKIEIDFEIGEEVTEKVELKSLGRRAILSLRQNLLSKIN 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 E + + +F+ GEII V + I + E V+ +++ +P + FR GD V Sbjct: 123 EYDNTNIYKKFKNKIGEIINVEVYHILPKQIIMRDEEQNEMVLPKQEQIPNDFFRKGDPV 182 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R ++ V + +TR L ELF++E+PE+ E +I +K AR PG +AK++V Sbjct: 183 RALVKRVDWKDNKPLAILTRKDDSFLEELFKLEIPEVSEGLITVKKVARIPGEKAKVSVD 242 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 + D RIDP+GACVGM+G+R+ + EL E ID++ + N ++ A++PA V+ + V+ Sbjct: 243 SYDDRIDPIGACVGMKGSRIHPIVRELKNENIDVINYTTNIQLYITRALSPAKVSMMEVN 302 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 E+ +++ V+ +++AIGR GQN+RLASQL+G+++++ Sbjct: 303 EEHKYVNVYVKLEEISKAIGRGGQNIRLASQLTGYKIHIF 342 >UniRef50_Q2SSE3 Transcription elongation protein nusA, putative n=4 Tax=Mollicutes RepID=Q2SSE3_MYCCT Length = 558 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 108/339 (31%), Positives = 193/339 (56%), Gaps = 5/339 (1%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+L ++ + EK + +E I L+ L A ++ Y+ + +++ I+ K+G + Sbjct: 6 ELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINEKTGSITMHQELK 65 Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIE-SVTFDRITTQTAKQVIVQKVREAE 122 VV+E+ EITL+ A+ ++ + +GD + IE S F R+ +Q+ QK+REAE Sbjct: 66 VVEELDDDWLEITLQKAKLQNPNAQIGDIIYKPIEFSEEFSRMVVNQVRQIFQQKIREAE 125 Query: 123 RAMVVDQFREHEGEIITGVVKKVNR-DNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 RA + +QF EGE++ V +NR +N LD+ N A + + + E F+ + + Sbjct: 126 RARIYEQFISLEGEVVQAKVVGMNRENNYVLDI-NGTTAYLWKNKTINNEIFQINEIIDV 184 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + V E++ +Q+ ++R+ P L +L EVPE+ ++EIK +R+PG R+K+AV T+ Sbjct: 185 YIEVVEKESKLSQIAISRTAPAFLTKLIEREVPEVRMGIVEIKGVSREPGKRSKVAVVTH 244 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 ++ ++P+GA +G+ G R+ +S L GE+ID++ W D+ ++INAM P V SI D Sbjct: 245 NQNVEPIGAIIGVGGNRINRISDILKGEKIDVIRWSDDQITYLINAMTPVKVISINKIGD 304 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 ++ DI V L+ AIG+ G +L + L ++N+ + Sbjct: 305 EY--DIVVPDSQLSLAIGKQGITAKLIASLLKNKINIFS 341 >UniRef50_B2J957 NusA antitermination factor n=8 Tax=Cyanobacteria RepID=B2J957_NOSP7 Length = 425 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 203/368 (55%), Gaps = 46/368 (12%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQ-IDRKSGDFDTFRRW---- 62 ++E++S E+ LPR A++SA+ A K YE+ R Q ++RK D D F + Sbjct: 12 LIESISRERNLPRL----AVQSAIREALLKGYERY--RRAQNLERKQFDEDYFENFEVEL 65 Query: 63 -------------LVVDEVTQPTKEITLEAARYEDESLNLGDYV-----EDQIESVTFDR 104 +V+EV +I+L+ + LGD V DQ E F R Sbjct: 66 DIDGEGFRVLSTKTIVEEVNNTDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGE---FGR 122 Query: 105 ITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNN-----AE 159 + KQV+ QK+R+ +R MV ++F++ EG ++ V + R ++ L + + E Sbjct: 123 MAAMQTKQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVVLAVSSGFGQPEVE 182 Query: 160 AVILREDMLPRENFRPGDRVRGVLYSV-RPEARGAQLFVTRSKPEMLIELFRIEVPEIGE 218 A + + + LP +N+R + L V + + RG QL V+R+ +++ LF EVPEI + Sbjct: 183 AELPKREQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIED 242 Query: 219 EVIEIKAAARDP-------GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERI 271 EV+ I A AR+ G R KIAV T D+ +DPVGAC+G RG+R+Q V EL GE+I Sbjct: 243 EVVRIVAVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKI 302 Query: 272 DIVLWDDNPAQFVINAMAPADVASI-VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQ 330 D++ W +PA ++ NA++PA V + ++D + + V L+ AIG+ GQNVRLA++ Sbjct: 303 DVIRWSPDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAAR 362 Query: 331 LSGWELNV 338 L+GW++++ Sbjct: 363 LTGWKIDI 370 >UniRef50_B0MQX1 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQX1_9FIRM Length = 370 Score = 187 bits (476), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 113/339 (33%), Positives = 189/339 (55%), Gaps = 5/339 (1%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+ + ++ EK + + E +++AL A KK+Y + +++ ID G FD + Sbjct: 8 ELFEALTLLAKEKGIDPAVLIEKIQTALVIAIKKEYPRSENIKFDIDIAKGKFDVAIQKE 67 Query: 64 VVDEVTQPTKEITLEAAR-YEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 V EV +I++E A+ + L GD V ++++ F RI QTAKQVI Q ++E E Sbjct: 68 VAAEVEDDANQISMEEAKTHTRRKLEYGDIVAIKLDTQHFGRIAAQTAKQVIKQGLKEIE 127 Query: 123 RAMVVDQFREHEGEIITGVVKKV--NRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 R +V Q+ + E +T V K N +++L N E + R + +P E RPGD V+ Sbjct: 128 REQLVAQWGGLQDEAVTVTVLKTEPRTGNATVNLNGN-EVPLFRSEQIPGEVLRPGDMVK 186 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V L ++R E++ LF EVPEI + +EIKA +R+ GSR+K+AV + Sbjct: 187 VYVSGVSATDHRPMLKISRVNKELVKRLFESEVPEIYDGTVEIKAISREAGSRSKVAVIS 246 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVD 299 N+ +D +GAC+G R+ V ELGGE++D+V + + P +F+ A+ P+DV + + D Sbjct: 247 NNPDVDALGACIGPGRQRISKVCAELGGEKMDVVFYSEKPEEFIAQALKPSDVIRVEIPD 306 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 + V L+ AIG GQN +LA++L+G+++++ Sbjct: 307 PEVKACTAIVPDNQLSLAIGNKGQNAKLAAKLTGFKIDI 345 >UniRef50_P0A5M3 Transcription elongation protein nusA n=50 Tax=Actinomycetales RepID=NUSA_MYCBO Length = 347 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 196/341 (57%), Gaps = 30/341 (8%) Query: 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV 65 +A + A+ ++ + ++ E ++SAL TA + + D R++IDRK+G Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVI------ 58 Query: 66 DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 125 AR DE+ NL +D E F RI TA+QV++Q+ R+AE Sbjct: 59 --------------ARETDEAGNLISEWDDTPEG--FGRIAATTARQVMLQRFRDAENER 102 Query: 126 VVDQFREHEGEIITGVVKKVNRDN----ISLDLGNN---AEAVILREDMLPRENFRPGDR 178 +F EGEI+ GV+++ +R N + + +G +E VI + +P E++ G+R Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNR 162 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 +R + V AR + ++R+ P ++ +LF +EVPEI + +EI A AR+ G R+KIAV Sbjct: 163 LRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV 222 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-V 297 ++N ++ GAC+G G RV+ V +EL GE+IDI+ +DD+PA+FV NA++PA V S+ V Sbjct: 223 RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSV 282 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 +D+ + V L+ AIG+ GQN RLA++L+GW +++ Sbjct: 283 IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDI 323 >UniRef50_A4E6U9 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6U9_9ACTN Length = 415 Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 116/357 (32%), Positives = 189/357 (52%), Gaps = 35/357 (9%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 ++++ + + EK + + + + LE +LA + + E +V IDR +G +R Sbjct: 5 DMMSALMELCQEKHIDQLYLIDRLEQSLAKSYAEILHLEWGAKVTIDRTTGKIYVYRLEP 64 Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 + D + DE N ++ E + RI Q AK I VR + R Sbjct: 65 IDDSM---------------DEEGNFTEFEEIDVTPKNTSRIAAQHAKAEINAIVRNSAR 109 Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRP----GDR- 178 + ++F G++I+G V + D + + EA + D EN R G+R Sbjct: 110 EQIYEEFSGRIGDLISGTVLQSTPDFTIVKIREGVEAELPHFDQRRYENERNERPMGERY 169 Query: 179 -----VRGV----------LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEI 223 ++ V L VR E + ++R+ PE++ LF EVPEI E ++I Sbjct: 170 LHNQHIKAVIIDVRDPNSNLQPVRGEHSRPPIVISRTHPELMRRLFEQEVPEIYEGTVQI 229 Query: 224 KAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQF 283 K+ AR+PG R+K+AV + D R+DPVGACVG +G+RV+AV EL GER+D++LWD +PA + Sbjct: 230 KSIAREPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILWDADPAVY 289 Query: 284 VINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 V NA++PA V +++DE+K + V L+ AIG+ GQN RLA++L+GW +++ + Sbjct: 290 VANALSPAKVTRVLIDEEKAYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKS 346 >UniRef50_B0VFB8 Transcription elongation factor NusA n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFB8_9BACT Length = 411 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/413 (26%), Positives = 231/413 (55%), Gaps = 6/413 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+ +L + ++ K L ++ I + A+ + +K+ E E ++V ID +G Sbjct: 1 MSANMLDALNKLAAIKQLNKDTIQTIILEAVTSTLQKRLEPEAGLQVYIDELAGCVKVKF 60 Query: 61 RWLVVDEVTQPTKEITLEAARYED-ESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 + LVV E + +I+L AR + ++ LG+Y+E + F+ +T +++I K+R Sbjct: 61 KSLVV-EREEGLGQISLIDARNDYYHNVQLGEYIEKTMTLSEFEPKIVKTVQKIIQDKIR 119 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVN-RDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 + E + + F + + I+TG +K ++ +D G+ +A++ ++ + E +R GD Sbjct: 120 QLEEEKIQNDFNKQKHTIVTGKIKAIDDYGGYIIDTGH-VDALLPVDEQIENEFYRVGDN 178 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 ++ + ++R + G + ++R+ PE + +LF E+P I I+I+ R+PG R K+ + Sbjct: 179 IKAYVVNIRTQKDGVVIILSRTNPEFVKKLFEAEIPAIFSGEIKIRKIVREPGIRTKVEL 238 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 + D ++DP+ ACVG +G R+ ++ EL GE+IDIVL D+P + + NA+ + +++ Sbjct: 239 EAEDPKVDPIVACVGPKGTRIDSLRKELHGEQIDIVLHSDDPEKMIENALGVEGIKRVII 298 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 + + H+ + ++ + AIG+ G+NV+LA++L G ++++ T+ + + K A+ + Sbjct: 299 ERN-HSASVILDEADKLMAIGKQGKNVKLAAKLVGMKIDIYTMAEFEEK-MAKERRTVSH 356 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 411 T+ + A L + G+++++++ ++EL +EG+ + T E L+E AK Sbjct: 357 ITELDGVTPKIAETLKQAGYTSVQDIYTASLEELCNLEGMGQKTAERLKEAAK 409 >UniRef50_Q0I7K4 Transcription termination factor NusA n=43 Tax=cellular organisms RepID=Q0I7K4_SYNS3 Length = 501 Score = 181 bits (459), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 34/363 (9%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKK----------------KYEQEIDVRVQIDR 51 ++E +S EK L + + AL AL ++ +Y DV + +D Sbjct: 12 LIEDISEEKKLAPQVVEAALREALLKGYERYRRTLYLGISEDPFDEEYFSNFDVALDLDE 71 Query: 52 KSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQI--ESVTFDRITTQT 109 + + ++VDEV +I L E GD V + E F R+ T Sbjct: 72 EG--YRVLASKIIVDEVESEDHQIALAEVMQVAEDAQAGDTVVLDVTPEKEDFGRMAAAT 129 Query: 110 AKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNI----SLDLGN-NAEAVILR 164 KQV+ QK+R+ +R M+ ++F + E ++T V + R +I S LG EA + R Sbjct: 130 TKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEAELPR 189 Query: 165 EDMLPRENFRPGDRVRGVLYSVRP-EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEI 223 D LP +N+R + L V RG QLFV+R+ +++ LF EVPEI E + I Sbjct: 190 RDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRI 249 Query: 224 KAAAR--DPGSRA-----KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLW 276 A AR +P SRA K+AV + ++ +DPVGAC+G RG+R+Q V EL GE+ID++ W Sbjct: 250 VAVAREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRW 309 Query: 277 DDNPAQFVINAMAPADVASI-VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWE 335 +P+Q++ N+++PA V + +VD + + V L+ AIGR GQNVRLA++L+GW+ Sbjct: 310 SQDPSQYIANSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWK 369 Query: 336 LNV 338 +++ Sbjct: 370 IDI 372 >UniRef50_UPI0001C373AB NusA antitermination factor n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373AB Length = 416 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 103/341 (30%), Positives = 192/341 (56%), Gaps = 5/341 (1%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID-VRVQIDRKSGDFDTFR 60 N +E++ E ++ + + E ++SA+ A K+ Y D +RV+ID K+ F+ F Sbjct: 4 NNAFFKALESLGEENSVETDLLIEKVKSAMLKAAKRAYPHSEDRIRVEIDPKTKKFEMFI 63 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 ++D+ E+ ++ AR D + +G + +I+ R+ +AKQ I +RE Sbjct: 64 VQDIIDDYPIDENEVNIDVARTIDPNAIVGGTILKEIDISKLGRMAALSAKQSIKGDLRE 123 Query: 121 AERAMVVDQFREHEGEIITGVVKKV--NRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 R ++ +F + E E IT V +V R +++ + E + R + +P E G Sbjct: 124 INREQMLGKFEQKEHECITAKVSQVEPGRGTVTV-VYEGTELYLFRNEQIPGETLEEGQS 182 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 V+ + + + + + ++R+ +++ LF +EVPEI + +E+K+ +R+ GSR KIAV Sbjct: 183 VKVYITGIIGKNKKPVVKISRTHKDLVKRLFELEVPEIYDGTVEVKSISREAGSRTKIAV 242 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADV-ASIV 297 + D +D VGAC+G + +R+ A+ EL GE+IDI+ W + +F+ A+APA+V +IV Sbjct: 243 WSKDPNVDAVGACIGAKRSRITAIVNELNGEKIDIIPWSEKTEEFIARALAPAEVLKTIV 302 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 E+++T + V L+ AIG GQN +LA++L+G+++++ Sbjct: 303 TSEEENTCTVIVPNNQLSLAIGNKGQNAKLAAKLTGFKIDI 343 >UniRef50_D1AY66 NusA antitermination factor n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AY66_STRM9 Length = 362 Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 107/343 (31%), Positives = 192/343 (55%), Gaps = 7/343 (2%) Query: 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV 65 L +E + EK + + + E L++ L A KK + + ++ ++ID+ +GD F L++ Sbjct: 10 LDAIEELEKEKGIQKGDLLERLKTGLLAAYKKDFNDQENLEIEIDQITGDVKMFCEKLII 69 Query: 66 DE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 D+ V T EI A+ + + +GDY++ ++ + F+R Q AK +I+Q +RE E Sbjct: 70 DDEVKVYNETTEIPFSKAKNHRKRIKVGDYLKIELNADEFNRNAIQRAKSIIIQYIREQE 129 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLG-NNAEAVILREDMLPRENFRPGDRVRG 181 + ++ Q E +I+ +V+++ +N SL +G N + +I + ++ + + GDR+ Sbjct: 130 KELICKQLTAIEHQIVNVIVRRI-EENGSLYVGMNGLDLIIPQRELSSLDKVQVGDRLVA 188 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + SV R ++ +TR +++ +LF EVPEI +I IK AR+ G +AK+A+ + Sbjct: 189 YIRSVDTNGRFPKVDITRIDDKLIHKLFEREVPEIASGIIVIKNIAREVGVKAKVAIYSE 248 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS--IVVD 299 D ID G+C+G G R+ + EL GE+I++V W+ + FV NA+ PA++ S IV + Sbjct: 249 DPNIDLKGSCIGKDGVRINNIINELNGEKIELVEWNADQRIFVKNALYPAEIFSVEIVRN 308 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 ED+ + V+ L AIG+ G N +LA +L +N+ D Sbjct: 309 EDEIVAKVEVDPSQLTLAIGKKGVNSKLAGKLCKLRVNIEASD 351 >UniRef50_Q3B1Z7 NusA antitermination factor n=12 Tax=Chlorobiaceae RepID=Q3B1Z7_PELLD Length = 553 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 111/343 (32%), Positives = 184/343 (53%), Gaps = 29/343 (8%) Query: 23 IFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARY 82 I + L+ + +K Y+ E++ + I+ + GDF+ + +V+EV EI+LE R Sbjct: 44 IADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDIAPIEISLEEIRR 103 Query: 83 EDESLNLGDYVEDQIESVTFD----RITTQTAKQVIVQKVREAERAMVVDQFREHEGEII 138 DESL +GDY E+ + D R + Q KQ + +KVR+ ER +V ++ E GE+I Sbjct: 104 IDESLEVGDYYEEG--PIKLDDYLTRKSIQIIKQSVQKKVRDLERMVVYEECLEKVGEVI 161 Query: 139 TGVVKKVNRDNISLDLG----NNAEAVILREDMLPRENFRPGDRVRGVLYSV---RPEAR 191 V +V + + + E V+ + +M+ ++N R R++ + ++ R + R Sbjct: 162 AAEVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKNIERERVKVR 221 Query: 192 --------------GAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 G ++ V+R L +LF EVPEI + +I IK AR PG RAK+A Sbjct: 222 LDDGTMEEKEKADGGMKVIVSRVDDRFLYKLFEQEVPEILDGLIVIKGIARVPGERAKVA 281 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V++ RIDPVGA VG RG R+Q++ EL E ID++ + D P ++ A+ PA + + Sbjct: 282 VESTSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYSDEPQVYISRALQPAKIDPLT 341 Query: 298 VDEDKHTMD--IAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 V D T + ++ + AIG+NG N+ LA +L+G+E++V Sbjct: 342 VHADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDV 384 >UniRef50_O51740 Transcription elongation protein nusA n=21 Tax=Borrelia RepID=NUSA_BORBU Length = 482 Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 113/412 (27%), Positives = 221/412 (53%), Gaps = 16/412 (3%) Query: 12 VSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQP 71 ++N++ + + I + ++ ++ A KK + + ++ D +GD + + +V EV Sbjct: 12 IANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDS 71 Query: 72 TKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFR 131 EI E++ GDY +I FDR++ Q AKQ ++ E ++ +F+ Sbjct: 72 LLEIL--EKDISKENIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFK 129 Query: 132 EHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEAR 191 +++ G V++ ++ ++LGN + +I ++ PRE + D++R ++Y+V+ Sbjct: 130 SKLNKVVIGYVQQNRNGDLYVNLGN-TDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKN 188 Query: 192 GAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGAC 251 G ++ ++R+ P+ + EL +E+PEI E +I+I RDPG R K+AV + + IDPVG C Sbjct: 189 GIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPC 248 Query: 252 VGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKHTMDIAVE 310 +G +G R+Q++ EL GE+IDI+ + + +F+ +++ P+ + + ++DED H + V Sbjct: 249 IGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVS 308 Query: 311 AGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFA 370 L+ AIG+ GQNVRLA++L W ++V T A+ +A + +T + D+ Sbjct: 309 DDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQF-AEMKANSEFKQETLEMF---DKVMQ 364 Query: 371 TVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQE 422 V+ EE F + +++ +++ LD + L + + + QA E Sbjct: 365 DVVEEEQFEEISKIS--------DLKLLDPSVISNLSKEGFDDINNFLQADE 408 >UniRef50_Q0EZ71 Transcription elongation factor NusA n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ71_9PROT Length = 235 Score = 171 bits (432), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 144/236 (61%), Gaps = 2/236 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E+L V +AV+ EK++ RE + EA+E AL TA ++ Y ++V +IDR +G+ F Sbjct: 1 MNVEMLQVADAVAREKSVDRELVLEAMEQALKTAARRTYPG-LNVEAEIDRDTGEIRLFH 59 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + V+EV E+T+E A+ + LG + + RI QTAKQVI QK+RE Sbjct: 60 VRVAVEEVEDQDNELTVEEAQALRDDAVLGSEFRTALAPIELGRIAAQTAKQVINQKIRE 119 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER V+ ++ GE+ITG+VK+V R N+ +DLG EAV+ RED+LPRE FR GDRVR Sbjct: 120 AERERVIAEYEPRVGELITGIVKRVERGNVYVDLG-RGEAVMYREDLLPRETFRQGDRVR 178 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 L VR + +G +FV+RS M++ LF EVPEI + + I+ P A++ Sbjct: 179 AYLREVRNQPKGPVVFVSRSDAGMVLRLFEQEVPEIEDGTVTIQRLPVIPARAARL 234 >UniRef50_B7K5I0 NusA antitermination factor n=9 Tax=Cyanobacteria RepID=B7K5I0_CYAP8 Length = 412 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 127/393 (32%), Positives = 211/393 (53%), Gaps = 34/393 (8%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKK-----------YEQEID-VRVQIDRKSGD 55 ++E +S LP+ + EAL AL ++ +E D V++D + Sbjct: 12 MIEEISQLHNLPKSAVQEALREALLKGYERYRRSQNLERQAFHEDYFDNFEVELDTEEEG 71 Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVT-----FDRITTQTA 110 F +V+ V I+LE + LGD V + VT F R+ Sbjct: 72 FRILSTKKIVEAVENTDHFISLEEVQEVASEAQLGDEV---VLDVTPNQKDFGRMAAIQT 128 Query: 111 KQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDN----ISLDLGN-NAEAVILRE 165 KQV++QK+R+ +R ++ ++F E EG ++ V + R + + G EAV+ + Sbjct: 129 KQVLLQKLRDQQRKLIQEEFNEIEGTVLNARVLRFERQDAIVAVQSTFGQPEVEAVLPKR 188 Query: 166 DMLPRENFRPGDRVRGVLYSVRPEA-RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIK 224 + LP +N+R + +L VR + RG QL V+RS ++++LF +EVPEI EE++ I Sbjct: 189 EQLPNDNYRANATFKVLLKKVREGSHRGPQLIVSRSAAGLVVDLFTVEVPEIEEEIVRIV 248 Query: 225 AAARDP-------GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWD 277 A +R+ G R KIAV T ++ +DPVGAC+G RG+R+QAV EL GE+ID++ W Sbjct: 249 AVSREANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWS 308 Query: 278 DNPAQFVINAMAPADVASIV-VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWEL 336 +PA ++ NA++PA V +++ ++ D+ + V L+ AIG+ GQNVRLA++L+GW++ Sbjct: 309 PDPATYIANALSPARVDNVILINPDERHALVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 337 NVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDF 369 ++ QA+ + + HA T L+ D + Sbjct: 369 DIKDTATYQAEVEQKKHAQNQTAIDPLEEDPNL 401 >UniRef50_A6QCD2 Transcription termination factor NusA n=17 Tax=Epsilonproteobacteria RepID=A6QCD2_SULNB Length = 387 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 117/355 (32%), Positives = 189/355 (53%), Gaps = 23/355 (6%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR--- 60 +IL +++A+++EK + RE EA + AL KK + V ID + + + Sbjct: 3 KILDIIDAIAHEKNISREHALEAFKEALVNTAKKLTSFTSNFEVTIDNDTKTYSVQKVIT 62 Query: 61 ------RWLVVDEVTQPTKEIT-------LEAARYEDESLNLGDYVEDQIESVTFDRITT 107 L V+ + KE+ L A+ DESL +GD + ++ + R + Sbjct: 63 IVADDDEQLFVEVGKEDNKEMIPSDAVMPLSEAKEFDESLEIGDKLTEEFVLEDYGRTAS 122 Query: 108 QTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD-NISLDLGNNAEAVILRED 166 + + ++ + +++RE G ++ G V +++ D N +++G + LR + Sbjct: 123 ANLFRELEYHIQRRIEQDLFEKYREKVGTVMLGTVNRIDADDNTHVEIGELKGILTLR-N 181 Query: 167 MLPRENFRPGDRVRGVL--YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIK 224 + E F+ GD +R +L SV P+ G L +TR+ P+ L L EVPEI + V+EI Sbjct: 182 RIKGEKFKRGDTIRALLRYVSVDPQ-YGLFLELTRTSPKFLEALMASEVPEIADGVVEIV 240 Query: 225 AAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFV 284 AAR PG RAKIA+KT +DP+GA VG++G R+ AVS EL GE ID + + P F+ Sbjct: 241 NAARIPGERAKIALKTEQMNVDPIGAAVGVKGVRINAVSEELNGENIDCIEYSPIPEIFI 300 Query: 285 INAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW--ELN 337 A++PA SI VD+D+ + + A+AIG++G N+RLAS L+G+ ELN Sbjct: 301 TRALSPAITQSIKVDQDEKKAVVNITGDQKAKAIGKSGINIRLASMLTGYTIELN 355 >UniRef50_C8W720 NusA antitermination factor n=9 Tax=Coriobacteriaceae RepID=C8W720_ATOPD Length = 413 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 118/363 (32%), Positives = 191/363 (52%), Gaps = 45/363 (12%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M E++ + + EK + + + LE +LA + + RV IDR +G Sbjct: 1 MASEMMEALMLLCQEKHIDELYLLDRLEQSLAKSYADVLHLDFGARVTIDRATG------ 54 Query: 61 RWLVVDEVTQ--PTKEITLEAARYEDESLNLGDYVE-DQIESVTFD--RITTQTAKQVIV 115 R V + V + P +E G+Y E D+++ D RI Q AK I Sbjct: 55 RVYVYELVPKGEPDEET--------------GEYTEFDEVDVTPPDTSRIAAQHAKAEIK 100 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVIL----------RE 165 VR A RA + D+FR G+IITG V + D + + EA + R+ Sbjct: 101 TLVRNAARAQIYDEFRGRVGDIITGTVLQSTPDFTIIKIREGVEAELPHFDQRRFPDERD 160 Query: 166 DMLPRENFRPGDRVRGVLYSVR------PEARGAQ----LFVTRSKPEMLIELFRIEVPE 215 + E + R++ ++ VR P RG + + V+R+ P+++ LF +EVPE Sbjct: 161 ERPAGERYLHNQRIKAIIVDVRDPNATQPAVRGERQRPPIVVSRTHPDLIRRLFELEVPE 220 Query: 216 IGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVL 275 + + V+ I++ AR+ G R+KIAV + D+R+DPVGACVG +G+RV+ V +EL GER+D+V Sbjct: 221 VYDGVVSIRSIAREAGVRSKIAVSSVDERLDPVGACVGPKGSRVRTVVSELRGERVDVVP 280 Query: 276 WDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWE 335 W D+ A+ V +A++PA V+ ++VD + V L+ AIG+ GQN RLA++L+G Sbjct: 281 WFDDAARCVASALSPARVSRVIVDGATGHATVIVPDDQLSLAIGKEGQNARLAARLTGLH 340 Query: 336 LNV 338 +++ Sbjct: 341 IDI 343 >UniRef50_B1VGB9 N utilization substance protein A n=2 Tax=Corynebacterium RepID=B1VGB9_CORU7 Length = 332 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 109/344 (31%), Positives = 188/344 (54%), Gaps = 31/344 (9%) Query: 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV 65 LA + A+ ++ +P +++ A+ + L A + + +V VQID SG ++ Sbjct: 5 LATLRAIERQEGVPVDELIHAIANGLKEAYRNQSAFAGEVDVQIDPTSGAVAIYQ----- 59 Query: 66 DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 125 +E DE N+ +++ E+ FDR T ++ I +++ A Sbjct: 60 -----------VE----RDEEGNVTGRLDETPEN--FDRTTALAMREAIRRRIGGARVQQ 102 Query: 126 VVDQFREHEGEIITGVVKKVNRDN----ISLDLGNNAEAV---ILREDMLPRENFRPGDR 178 D++ I++GVV + R N + +G A+ + IL + +P E + G R Sbjct: 103 RYDEYSSIRHTIVSGVVTRDARANERGITVVHIGTEADGIDGQILPAEHIPGEVLKHGTR 162 Query: 179 VRGVLYSVRPEA-RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 V+ + V A R Q+ ++R+ PE++ LF +EVPE+ + +EI + AR+ G R KIA Sbjct: 163 VKAFVTDVIKHADRNVQISLSRTHPELVRGLFELEVPEVADGSVEIMSIAREAGHRTKIA 222 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPAD-VASI 296 V+ K ++ GAC+G RG RV A+ ELGGE+IDI+ + D+PAQ+V NA++P+ V+S Sbjct: 223 VRATIKGLNAKGACIGPRGQRVSAIMAELGGEKIDIIDYSDDPAQYVGNALSPSKYVSST 282 Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 V+D ++ + V L+ AIGR GQNVRLA++L+ W++++ + Sbjct: 283 VIDAEQQIARVVVPDYQLSLAIGREGQNVRLAARLTCWKIDIKS 326 >UniRef50_B4U6H2 NusA antitermination factor n=3 Tax=Aquificaceae RepID=B4U6H2_HYDS0 Length = 322 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/345 (30%), Positives = 191/345 (55%), Gaps = 31/345 (8%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M K I ++E V+ EK +P + + AL++A+A +K E+ I ++ ID D DT Sbjct: 1 MVKNIKKLIENVAKEKDIPAKIVEIALKNAIAYGIRK--EKHIRGKIYID--FADDDTIT 56 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +++ + R E L ED +RI AK+ ++++ Sbjct: 57 AYII--------------SGR---EKTKLDISTED------LNRIAAYAAKEEFLKELEN 93 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISL-DLGNNAEAVILREDMLPRENFRPGDRV 179 AER ++ EG I+ G+V+++ +D ++ DLG +A + R + + +E+F+ DRV Sbjct: 94 AERERGFLEYVSQEGNIVHGIVREITKDQTAIVDLGP-IDAELPRREQISKESFKKNDRV 152 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 + +L+SV+ E L ++R+ P+ L L E+PE+ +++I + AR+PG +AK+ V Sbjct: 153 KALLFSVQKERGRPVLLLSRTHPKFLRRLLEAEIPEVATGLVKIISVAREPGEKAKVVVD 212 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 T DK+IDPVG +G++G+++ +S EL GE ID+V + + +F+ N PA + V Sbjct: 213 TEDKKIDPVGVVIGIKGSKINPISKELAGEHIDVVRYSKDKKKFLENLFFPAKILD--VR 270 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDL 344 E + +++AV+ ++ AIG+ G N +LA ++ G ++VM+ +D Sbjct: 271 ESDNQIEVAVDKDQISLAIGKRGINTKLAYKILGKHIDVMSKEDF 315 >UniRef50_Q8EWU2 N-utilization substance protein A n=1 Tax=Mycoplasma penetrans RepID=Q8EWU2_MYCPE Length = 597 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 189/347 (54%), Gaps = 11/347 (3%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 K L ++ ++ EK +E I L++AL + K+ ++D+ V +D F + Sbjct: 4 KSFLENLDKIAKEKDTSKENIVNILKTALEKSYLKE-NPDLDIEVVVDLNKESIKLFEKR 62 Query: 63 LVVDEVTQPT---KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 +VVD+ KEI + A+ +S LGD V ++ F+R T Q++ + Sbjct: 63 VVVDKSEDEIDDDKEINISEAQELKKSYKLGDTVSTEVNIDKFERRITSHFAQILTHNLN 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 + + V +++++ G II V+KV+ + ++LG+ + V+LR + +P E +PG Sbjct: 123 DISNSKVYEEWKDKVGNIIRAEVEKVDNRLVEVNLGS-TKGVVLRSEQIPGEELQPGQSY 181 Query: 180 RGVLYSVRPE-ARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 ++ V+ + +G + ++R+ +L L + E+ EI + +IEIK +R G + K+A+ Sbjct: 182 LFLIKEVKSQQTKGWPIILSRADEGLLRYLLKTEISEISDGIIEIKRISRIVGYKTKVAI 241 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 + +D VG VG +G R++ +S+ L ERID++L+D++P QF++NA P + + + Sbjct: 242 LSRVPGVDAVGTAVGPKGERIKKISSTLNNERIDVILYDEDPKQFLVNACHPEKIVGVEI 301 Query: 299 DEDK-----HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 +D+ + I +L + IG+NG NVRL S+L+GW +++++ Sbjct: 302 TDDEDIPGSKIVTIVCPEESLIKLIGKNGINVRLLSKLTGWSIDIIS 348 >UniRef50_C3XEZ2 Transcription termination factor NusA n=2 Tax=Helicobacter RepID=C3XEZ2_9HELI Length = 384 Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 192/350 (54%), Gaps = 11/350 (3%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 +IL +VE +++E LP++++ A++ ++ KK+ + + V D + + ++ + Sbjct: 3 KILDIVEMIASENGLPQDQVVLAIKDSMVKMAKKEINENANFVVIEDWSAKELRLVQKMI 62 Query: 64 VVDEVTQP----TKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 V D+ + + I L AR E++N GD +E QI +R I +++ Sbjct: 63 VCDDSSFSKDLESTHIPLNEARSLVENVNTGDELEYQINLEGMNRNAVNNIFHDITYQIQ 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRD-NISLDLGNNAEAVILREDMLPRENFRPGDR 178 + ++ F + G I+ G V V+ + N S+++G A++ ++ + E F+ G Sbjct: 123 KLNEQEILKAFEKDIGHIVIGQVVHVDDEGNTSIEIGE-TRAILSLKNRIKGEKFKVGQP 181 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 VR +L SVR G ++ ++R+ P++L EL +EVPEI + + I AR PG +AK+A+ Sbjct: 182 VRSILKSVRITKNGVKIELSRTTPKLLEELLMLEVPEIKDGEVSIYKIARIPGEKAKVAL 241 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 TN+ +IDP+G+ VG RG R+ AVS EL GE ID + + P FV +++PA V S+ + Sbjct: 242 YTNNPKIDPIGSAVGARGVRINAVSKELHGENIDCIEYSSVPEIFVAKSLSPAQVISVKL 301 Query: 299 -----DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDD 343 +E+K + + ++AIG+ G N+RLAS L+G++ + V D Sbjct: 302 QKADTEEEKPKAIVQIAKSQKSKAIGKAGVNIRLASMLTGYDFELQEVAD 351 >UniRef50_B5Y929 Transcription termination factor NusA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y929_COPPD Length = 343 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 186/339 (54%), Gaps = 29/339 (8%) Query: 9 VEAVSNEKALPREKIFEALESALATATKKKYE---QEIDVRVQIDRKSGDFDTFRRWLVV 65 + ++++ L ++I EAL+ AL +A +K+ + + + ++I+ ++LV Sbjct: 17 IRQIASDLDLTPQEIIEALKDALVSAIRKELDIPKEAVGSAIKIEENGSSL----KFLVN 72 Query: 66 DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 125 + + E DE+++ D++E + +++ R++ QTA+ + ++ E + Sbjct: 73 KDFVKTIPE---------DEAVS--DWIEFPLSNLS--RVSIQTAENTLKNRMNEKSKEK 119 Query: 126 VVDQFREHEGEIITGVVKKVNRDN----ISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 + + + GE++T V + RD I +D+ + E V+ + LP + + PGD +R Sbjct: 120 AIKRIAQFSGEVVTARV--IRRDPKTKLIYMDV-DGVECVLEPSEQLPTDRYAPGDSLRC 176 Query: 182 VLYSVRP-EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 ++ + G + ++RS P++L LF +EVPE+ + V+ I AR PG R+K+AV + Sbjct: 177 LVLGAKNIPMYGQGVALSRSSPDLLKLLFTLEVPEVADGVVRIMGIARKPGRRSKVAVMS 236 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVD 299 D R+DP GAC+G +G R+QA+S L E+ID+V WD +PA+ + N ++P V + V+D Sbjct: 237 IDPRLDPQGACIGYKGQRIQAISRSLANEKIDVVRWDTDPAKLIANVLSPGKVDKVEVLD 296 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 + N+ +G +G+NV LA QL+GW ++V Sbjct: 297 PKNKRALVYTTPDNIKVVVGEDGENVELAEQLTGWTIDV 335 >UniRef50_A7I0Q5 Transcription termination factor NusA n=2 Tax=Campylobacter RepID=A7I0Q5_CAMHC Length = 366 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 101/343 (29%), Positives = 178/343 (51%), Gaps = 9/343 (2%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW- 62 +I ++E+++NEK L ++ E ++ A KK + ++ QID S F++ Sbjct: 3 KITDIIESIANEKGLEEAEVSEKVKIAFIQTAKKIFGEDFVYESQIDPVSKKIKLFQKVS 62 Query: 63 -----LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 V+ + ITL+ A+ D ++ +GD + I R +Q + Sbjct: 63 VVANDFVLKDGLNEQNFITLDKAKKIDPTIEIGDEISYDINLEKIGRTASQILFNELNYH 122 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 ++ ++ + E GE++ G V V+R+ + ++ +A + ++ + E F GD Sbjct: 123 IQRLLEEKILKHYNEKIGELVHGSVTGVDREQTTYVEVDDIKAYLPMKNRIKDEKFEVGD 182 Query: 178 RVRGVLYSVRPEA-RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 + V+ V + +G ++ ++R+ P+ L L + EVPEI + + +KA AR PG RAKI Sbjct: 183 IINAVIRHVFIDKNQGIKIELSRTSPKFLEALLKAEVPEIKDGSVILKACARIPGKRAKI 242 Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296 A+ IDPVGA VG +G R+ AVS EL E ID++ W + P V AM+PA S+ Sbjct: 243 ALSAISPNIDPVGATVGTKGVRINAVSAELKKENIDVIEWSNQPEILVARAMSPAIANSV 302 Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 + EDK + + ++AIG++G N+RLAS L+G ++ ++ Sbjct: 303 KISEDKAI--VYINPAQKSKAIGKSGLNIRLASMLTGLQIELV 343 >UniRef50_Q83N21 N utilization substance protein A n=2 Tax=Tropheryma whipplei RepID=Q83N21_TROWT Length = 319 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 145/251 (57%), Gaps = 4/251 (1%) Query: 90 GDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDN 149 GD++ +S F R+ AK+VI K+R +++ G +++GV+ + N Sbjct: 67 GDFIP--YKSDAFSRMAATAAKRVITSKMRTLSDDSTFARYKTKIGTVLSGVISQSTSQN 124 Query: 150 ISL-DLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIEL 208 + L EA++ E+ +P E + G V+ + V RG+ ++V+R+ P ++ L Sbjct: 125 FRMVSLDRRTEAILRPEEQIPGEEYPHGKMVKVYVTDVTLGPRGSNVYVSRTHPGLINGL 184 Query: 209 FRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGG 268 F EVPEI +EI A +R+ G R K++V++N K VGACVG G RV+AV++E+ Sbjct: 185 FLQEVPEIASGTVEIVAVSREAGHRTKVSVRSNSKSTSAVGACVGEYGCRVRAVTSEICN 244 Query: 269 ERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRL 327 E+IDI+ + D+ Q+V NA++PA A + V+D + + + V + AIG+ GQN RL Sbjct: 245 EKIDIISYSDDLGQYVANAISPATAADVFVLDSRQKVVRVYVSKEEYSLAIGKEGQNARL 304 Query: 328 ASQLSGWELNV 338 A++L+G ++++ Sbjct: 305 AARLTGAKIDI 315 >UniRef50_A8ERE7 Transcription termination factor NusA n=15 Tax=Epsilonproteobacteria RepID=A8ERE7_ARCB4 Length = 391 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 101/379 (26%), Positives = 207/379 (54%), Gaps = 29/379 (7%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 +I+ ++++++ EK L + + +L+ AL ++ + + IDR + + F++ Sbjct: 3 KIIDILDSIAYEKGLKIDDVENSLKEALIKTAQRMVDTTLIFDANIDRANKKLELFQKIE 62 Query: 64 VVDE---------------VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQ 108 VV + P I+LE A+ + L++GD++ ++E F+ + Sbjct: 63 VVSKDDDRLKEGSLTKEGTPINPENYISLEEAKEINSDLDIGDFMSYELE---FENMGRN 119 Query: 109 TAKQVIVQKVREAERAM---VVDQFREHEGEIITGVVKKVNR-DNISLDLGNNAEAVILR 164 A ++ +R + +V +++E G+ ++G V ++++ DN +++G + ++ R Sbjct: 120 AATILLSNFEFRLQRFVEENIVGKYKEKVGKTVSGTVTRIDKSDNTYIEIGE-IKGILQR 178 Query: 165 EDMLPRENFRPGDRVRGVLYSVR-PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEI 223 + + E F+ GD V+ V+ SV + G + ++R+ P+ L L +EVPE+ ++ I I Sbjct: 179 KSRIKGEFFKVGDVVKAVVKSVNIDKTNGLLVEISRTSPKFLENLLVLEVPELKDKKIAI 238 Query: 224 KAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQF 283 +A+AR PG+R+KIA+ T D +IDP+GA VG++G R+ +VS +L GE ID V + + P F Sbjct: 239 EASARIPGTRSKIALSTIDAQIDPIGAVVGVKGVRIGSVSKQLNGENIDCVEYSEIPEIF 298 Query: 284 VINAMAPADVASIVVDED-----KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 + A++PA V S+ ++++ K + + + ++AIG+ G N+RLAS L+ +++ + Sbjct: 299 ISRALSPAIVHSVKIEKNPENGEKGKAVVTIPSDQKSKAIGKAGLNIRLASMLTKYDIEL 358 Query: 339 MTVDDLQAKHQAEAHAAID 357 + + E + +D Sbjct: 359 IEIGSKTPTLNNETNVQVD 377 >UniRef50_A9NF09 Transcription termination factor n=16 Tax=Acholeplasmataceae RepID=A9NF09_ACHLI Length = 358 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/348 (27%), Positives = 188/348 (54%), Gaps = 10/348 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 ++K +E V+ + L +E++F A E L A KK+ + RV+ + + + Sbjct: 2 ISKAFFQNIEEVAEDNDLNKEQVFHAFEQGLIAACKKQLGVQT-CRVEFKEEKHELLIYG 60 Query: 61 RWLVVDE------VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 ++ V+ E + + + LE A+ +S G+ +E +IE F ++ K Sbjct: 61 QYYVLPEGELNLELDKKYTFLKLEDAKALKKSAKAGEILEVKIEPSEFSYNASRDLKHRF 120 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 174 + + + ++ + ++ + E++T V + +D +++ + ++ +++ LP + F Sbjct: 121 NEVLNQIKKENIYQGLKDLQYEMVTARVLEEEKDFYRIEINKDVITMLPKKEALPTDKFH 180 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 GDR++ + V + +G +++V+R+ ++ L VPEI + IE+ ARDPG R+ Sbjct: 181 VGDRIKVYVTDVEMKTKGPKIYVSRTHVALVTRLLEEYVPEIKDGTIEVLGIARDPGDRS 240 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 K+ +K+N++ +D +GA VG G R++ +S L GE+ID+ W DN + + N++ PA V Sbjct: 241 KVGLKSNNENVDVIGATVGEGGVRIKEISKFLSGEKIDLFRWSDNEQELIGNSLQPAPVV 300 Query: 295 SI--VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 ++ V ++K + I +A L+ AIG+ GQNV+LA Q SGW +++ + Sbjct: 301 AVTRVNPKEKSALAIVPDA-QLSLAIGKLGQNVKLAVQASGWSIDIKS 347 >UniRef50_C7LKE4 Transcription elongation factor NusA n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKE4_SULMS Length = 342 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 176/317 (55%), Gaps = 2/317 (0%) Query: 27 LESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV-DEVTQP-TKEITLEAARYED 84 ++ + KKKY + + ++ + K+G+ + +R +V DE+ + K+I + A Sbjct: 22 IKKSFIFFLKKKYGKLKNYKIFFNYKNGEIEIWRDLKIVSDEIIKNFNKQIEISKAIKIK 81 Query: 85 ESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKK 144 ++L +GD ++++IE + + K+ + K ++ +R + ++ GEII V Sbjct: 82 KNLKIGDSLKEKIEYQQLGKKFLFSLKKDLFYKFKKFDRKNQLQILKKKIGEIIYAKVDY 141 Query: 145 VNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEM 204 + DNI N + ++L+E+ +P E F+ G+ ++ V+ LF++R Sbjct: 142 IINDNIFFKNNENNKMILLKEEQIPNEKFKKGNSFFLLIKKVKFIKNKIYLFLSRKDKNF 201 Query: 205 LIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVST 264 L +L +E+PEI +I IK R G R+KIA+K+ +K IDP+G CVG++G++++ + Sbjct: 202 LKKLLELEIPEISNGLIIIKKIVRIAGERSKIAIKSKNKTIDPIGTCVGLKGSKLKNIIK 261 Query: 265 ELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQN 324 E+ E IDI+ + N ++ +++PA VA I +D K I+V + + +AIG N Sbjct: 262 EINNEIIDIINYSSNIELYLTRSISPAKVAMIKIDRKKKLAFISVNSEEIKKAIGNKKTN 321 Query: 325 VRLASQLSGWELNVMTV 341 +RLAS+L+G+++ ++ + Sbjct: 322 LRLASKLTGYKIYILNI 338 >UniRef50_A6DBC4 Transcription elongation factor NusA n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBC4_9PROT Length = 356 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 103/341 (30%), Positives = 191/341 (56%), Gaps = 15/341 (4%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDE 67 ++ V+NEK L E++ EA + ++ T KK +IDV V+++ K ++ + VV++ Sbjct: 7 LLSLVANEKGLDFEEVKEAFKRSI-IKTAKKILGDIDVDVEMEDKK--LKIYQNFTVVND 63 Query: 68 ---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 + +P K + L+ AR DE+ +GD + +++ ++ A + + RE R Sbjct: 64 DRALNEPEKYLYLDEARDFDENAQIGDKLRAELD---LSKLGRSGAMALQREFEREITRL 120 Query: 125 MVVDQFRE---HEGEIITGVVKKVNRD-NISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 + + +R+ I++G V KV+ D N ++L + V+ R + + E F+ GD ++ Sbjct: 121 LENEIYRKLISKLNTIVSGEVIKVDNDENTYVEL-DGVRGVLPRRNRIKGEKFKVGDVLK 179 Query: 181 GVLYSVRPE-ARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 +L V + +G + ++R+ P+ L +L VPE+ + +I+I +AR PG R+K+AV Sbjct: 180 ALLKYVHFDNKKGITIELSRTSPKFLEKLIENAVPEVRDGLIKIHTSARIPGVRSKVAVS 239 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 + + +IDP+G +G G R+ A+S EL GE ID++ + P FV A++PA V S+ +D Sbjct: 240 SLNPKIDPIGTIIGKNGVRINAISNELAGENIDVIEYSPQPEIFVARALSPAIVKSVKID 299 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 E + V+ A+AIG+NG N+ LAS L+ +++ + + Sbjct: 300 EKNGIAYVDVDPSEKAKAIGKNGVNITLASMLTKYKIELKS 340 >UniRef50_B9PBC3 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9PBC3_POPTR Length = 274 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 78/164 (47%), Positives = 114/164 (69%), Gaps = 2/164 (1%) Query: 305 MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLD 364 MD+ V+ NLA +IGR+GQNVRLAS+L+GW++N+MT ++ K E+ F LD Sbjct: 1 MDVVVDEENLAVSIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESEVVRKLFMAKLD 60 Query: 365 IDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEES 424 +DE+ A +L+EEGFS+LEE+AYVP+ E++EIE DE TV LR RA++AL T+ A+EE Sbjct: 61 VDEEVADILIEEGFSSLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAREEK 120 Query: 425 LGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLA 468 + + + DL +L+G+ +L KLA + T +DLAE +D+LA Sbjct: 121 V--EEVSQDLRSLDGLTPELIGKLAEGNIHTRDDLAELAVDELA 162 >UniRef50_Q7VGP8 Transcription termination factor NusA n=1 Tax=Helicobacter hepaticus RepID=Q7VGP8_HELHP Length = 375 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 101/348 (29%), Positives = 181/348 (52%), Gaps = 12/348 (3%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 +IL +++ ++ +K L + + E ++ L +++ D V+ D K F R Sbjct: 3 KILDIIDLIAYDKGLESQAVLEIVKEGLIKIAQEEINPHYDYFVEQDAKERTLKLFYRMK 62 Query: 64 VV-DEVTQPTKEITLEAARYEDESLNLGDY-VEDQIES-VTFDRITTQTAKQVIVQKVRE 120 V DE Q E L ++ LGD + D+++ + D ++ ++ + Sbjct: 63 VCADE--QDLSEENLGTFLPLSQAKGLGDVSIGDEVDCELQLDAMSRGAINKLFLNLEYN 120 Query: 121 AERAM---VVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 +R++ ++ FR G+I+ G V ++ + + A++ +++ + ENF+ GD Sbjct: 121 LQRSIENQILQNFRAMVGKIVNGQVVGIDDSGNTFIEIESIRAILPQKNRIKGENFKVGD 180 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 VR +L V G Q+ ++R+ P+ L EL +EVPEI + + I +AR PG RAK+A Sbjct: 181 CVRAILKFVGINRNGLQVELSRTTPKFLEELLAMEVPEIKDNEVIIHKSARIPGDRAKVA 240 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V +N RIDP+G CVG++G R+ AVS EL E ID V + FV A+ PA V S+ Sbjct: 241 VYSNSARIDPIGCCVGVKGVRINAVSKELANENIDCVEYHSTLEIFVAKALTPAQVVSVK 300 Query: 298 VDE----DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 ++E ++ + +++ ++AIG+NG N+RLAS L ++ + + Sbjct: 301 IEEAQEGERKKAIVQIKSEQKSKAIGKNGVNIRLASMLCECDIELQEI 348 >UniRef50_Q6KIE0 N-utilization substance protein a n=1 Tax=Mycoplasma mobile RepID=Q6KIE0_MYCMO Length = 514 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 156/288 (54%), Gaps = 14/288 (4%) Query: 75 ITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHE 134 + +E A+ + SL + +D+I +F + V Q ++E + ++ ++ + Sbjct: 91 MNVENAKKINPSLEVNMTFKDEIPFESFSPSIFKKIYNVFTQSMKEFSKEYLISKYGNLK 150 Query: 135 GEIIT----GVVKKVNRDNISLDLGN-NAEAVILREDMLPRENFRP--GDRVRGVLYSVR 187 G+II G+ NR +SL L N N D L N GD V + V+ Sbjct: 151 GQIIRMKIEGINITNNRRMVSLKLENENGSIEAFMPDKLQNPNIEMVIGDYVEVYVEDVK 210 Query: 188 PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND---KR 244 P++RG ++ V+ + E+L +L +E+PEI I I A R PG R+KIAV Sbjct: 211 PDSRGLRVIVSNTSNEILKKLLELEIPEIASGNIVINAIKRIPGIRSKIAVSKTSFAPDG 270 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI--VVDEDK 302 IDP+GA VG +G+R+ +S LGGE+ID++L+D N +F+IN+++PA VA I + DE Sbjct: 271 IDPMGAIVGQKGSRINKISDRLGGEKIDVILFDTNLEKFIINSISPASVAHISKINDEAN 330 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA 350 + + V + +AIG+ GQNV+LA+ L+ L++++V QAK + Sbjct: 331 NHFLVVVPDLDNTKAIGKAGQNVKLAAGLTETRLDILSV--TQAKEKG 376 >UniRef50_Q9ZJA6 Transcription elongation protein nusA n=16 Tax=Helicobacter RepID=NUSA_HELPJ Length = 395 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/380 (26%), Positives = 181/380 (47%), Gaps = 66/380 (17%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDE 67 ++E ++ EK LP+E I + ++ L + + D R+LVV+E Sbjct: 7 LIECIAYEKNLPKEMISKVIQGCLLKMAQ-----------------NELDPLARYLVVEE 49 Query: 68 --------------------VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITT 107 V P+K I+L A+ D S+ + D + S++ + + Sbjct: 50 NKQLQLIQLVEVLEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELS---YSLSLESMKQ 106 Query: 108 QTAKQVIVQKVREAERAM---VVDQFREHEGEIITGVVKKVNRD-NISLDLGNNAEAVIL 163 ++ + E+A+ + F++ ++ G V V+ + N +++ + V+ Sbjct: 107 GAINRLFKDLQYQLEKALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLS 166 Query: 164 REDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEI 223 + E+F+ GD ++ VL V+ +G L ++R+ P+ML L +EVPEI ++ IEI Sbjct: 167 MRHRIKGESFKIGDSIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEI 226 Query: 224 KAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQF 283 AR PG+RAK++ +++ RIDP+GA VG++G R+ A+S EL E ID + + + P + Sbjct: 227 IHCARIPGNRAKVSFFSHNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIY 286 Query: 284 VINAMAPADVASIVVD---------EDKHTMDIAVEAGNLAQ-------------AIGRN 321 + A+APA + S+ + E+K ++ N Q AIG+ Sbjct: 287 ITLALAPAKILSVEIKKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKG 346 Query: 322 GQNVRLASQLSGWELNVMTV 341 G NV LAS L+G+ + T+ Sbjct: 347 GVNVCLASMLTGYHIEFETI 366 >UniRef50_D1J8W2 Transcription elongation protein NusA n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8W2_MYCHP Length = 546 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 98/355 (27%), Positives = 181/355 (50%), Gaps = 17/355 (4%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 KEI + +S K + + ++ EA ++ + + Y++E D+ D+++ +F Sbjct: 23 KEIYKQIYNLSQIKKIDQAEVVEAFKNTVTKLITETYDEEADLEFIFDQENDNFAIINHN 82 Query: 63 LVV--DEVTQPTK-------EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV 113 VV D +T K EI L A+ D ++ +GD + +I F + Sbjct: 83 KVVVGDPITSEEKDRLTRCIEIPLSDAKKIDPNVEIGDSLSQEINFEYFSKKDYNKILAN 142 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR--E 171 Q ++ ER M +++ G + VN+ ++L+L + A + + R Sbjct: 143 FSQDIKNLERKMTCEKYASEVGNSTKAKIVSVNKGKVNLELRDGTLAFMPSNFVNQRIIS 202 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 PGD + V+ V+ E AQ+ V+ + +L +LF IE+PEI + +I I AR PG Sbjct: 203 KLNPGDWIDVVIEEVKEENSNAQIIVSSVESRLLQKLFEIEIPEISQGLISIVNIARIPG 262 Query: 232 SRAKIAV-KTND--KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM 288 RAK+++ K+ND + ++ +GA +G R+ +S +L GE+ID+VL+ D+ +++ NA+ Sbjct: 263 ERAKVSIKKSNDAPETMEEIGAIMGRDSERISTISRKLNGEKIDVVLYSDDIKEYIKNAL 322 Query: 289 APADVASIVVDEDKH---TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 +PA V ++ K+ + ++ V AIG+ GQNV LAS+L +L++++ Sbjct: 323 SPAKVIDLIEVPSKNSYPSFNVIVPTIQHTLAIGKKGQNVSLASELVKAKLDILS 377 >UniRef50_B9L7T5 Transcription termination factor NusA n=1 Tax=Nautilia profundicola AmH RepID=B9L7T5_NAUPA Length = 357 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 96/341 (28%), Positives = 189/341 (55%), Gaps = 15/341 (4%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 ++L ++ V+NEK L +++ EA + ++ KK D+ V++D ++G+ ++ + Sbjct: 3 KVLDLLSLVANEKGLDFDEVKEAFKRSIIKTAKKVLG---DIDVEVDIENGELKIYQIFE 59 Query: 64 VVDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V ++ + +P K L+ AR D + +GD ++ +++ ++ A + + RE Sbjct: 60 VRNDDVALEEPEKYFYLDEAREFDPNAQIGDKLKVELD---LGKLGRSGAMALQREFERE 116 Query: 121 AERAMVVDQFRE---HEGEIITGVVKKVNRD-NISLDLGNNAEAVILREDMLPRENFRPG 176 R + + +R+ I++G V KV+ + N ++L + V+ + + E F G Sbjct: 117 ITRLLENEIYRKLISKLNTIVSGEVVKVDSEENTWVEL-EGVKGVLPMRNRIKGEKFEVG 175 Query: 177 DRVRGVLYSVRPEA-RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 D ++ +L V + RG + ++R+ P+ L +L VPE+ + +I+I +AR PG R+K Sbjct: 176 DVMKALLKYVHFDTNRGITIELSRTNPKFLEKLIESAVPEVRDGIIKIHTSARIPGVRSK 235 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 +AV + + +++P+G +G G R+ +VS EL GE ID++ + P F+ A++PA V + Sbjct: 236 VAVSSLNPKVEPIGTIIGKNGVRINSVSNELNGENIDVIEYSPKPEIFIARALSPAIVKN 295 Query: 296 IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWEL 336 + VDEDK + V+ A+AIG+NG N+ LA L+ +++ Sbjct: 296 VQVDEDKALAVVEVDPDQKAKAIGKNGINITLAGMLTKYKI 336 >UniRef50_Q7NBZ6 NusA-homolog n=1 Tax=Mycoplasma gallisepticum RepID=Q7NBZ6_MYCGA Length = 625 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 101/356 (28%), Positives = 169/356 (47%), Gaps = 23/356 (6%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATAT-KKKYEQEIDVRVQIDRKSGDFDTFR 60 NK L ++ V+ K + +++I L+ A+ A K+ +Q IDV + D G F+ Sbjct: 6 NKSFLEAIQTVAETKNISKKEISTILKDAIIRACAKEDPDQRIDVMIDFDM--GLLKIFK 63 Query: 61 RWLVVDEVTQP-----TKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 + V+D+ EI L+ A + ++ +GD + F R+ Q Sbjct: 64 LYKVIDDSVSEEEFDEINEIHLKDALATNPTIKVGDDFLKSLSIGDFSRVVATNISQYFR 123 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKK-VNRDNISL-DLGNNAEAVILREDMLPRENF 173 QK+ E V ++ +I+ G V+K N N+ L +LG A + D +P E Sbjct: 124 QKLSELVNKQAVSEWTPKLNKIVRGTVEKDENNPNVLLVNLGG-IYAYYYKRDWVPNEEL 182 Query: 174 RPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSR 233 + VL ++ +++ L V+RS + + +PEI E ++EIKA R G + Sbjct: 183 QNDVEYDFVLTQIKEQSKSWPLIVSRSDALYVKHVLTENIPEIKEGIVEIKAIQRVAGQK 242 Query: 234 AKIAVKTNDKRIDPVGACVGMRGARVQAVSTEL---------GGERIDIVLWDDNPAQFV 284 K+AV +N+ IDPV +G G R+++++ L E ID+ W+D+ + + Sbjct: 243 TKVAVLSNNPDIDPVTLILGDGGIRIKSIAANLIEHSSGVKVSNEVIDVFHWNDDVFKLI 302 Query: 285 INAMAPADVASIVVDEDKH---TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELN 337 NA P D+ + V ED ++DI VE L IGR G NVRL S ++GW ++ Sbjct: 303 ANACYPVDIIGVDVLEDSERDKSVDIIVEDQYLPFLIGRAGINVRLLSYMTGWSID 358 >UniRef50_D2SDW8 NusA domain protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SDW8_9ACTO Length = 524 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 87/248 (35%), Positives = 138/248 (55%), Gaps = 28/248 (11%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN ++ A+ +AV EK +P + + EA+E+AL TA + VRV +DRK+G+ Sbjct: 1 MNIDVTAL-KAVEREKGIPADTVIEAIETALVTAYRHADGASKHVRVHVDRKTGEV---- 55 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V+ + P E+ E ++D + F RI TAKQVIVQ++R+ Sbjct: 56 --AVLAQELGPDGEVVRE---WDDTPSD-------------FGRIAASTAKQVIVQRLRD 97 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNIS----LDLGNNAEAVILREDMLPRENFRPG 176 AE ++ EG+I++G+V+ R N S +D+G EAV+ + +P E++ G Sbjct: 98 AEHEQTFGEYAGKEGDIVSGIVQADQRRNASGTVLVDIGK-VEAVLPAAEQVPGESYPHG 156 Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 R+R + SV RG Q+ V+R+ P ++ +LF +EVPEI + +EI A AR+ G R+KI Sbjct: 157 SRLRAYVVSVARTYRGPQVTVSRTHPNLVRKLFALEVPEIADGSVEIVAVAREAGHRSKI 216 Query: 237 AVKTNDKR 244 AV+T+ R Sbjct: 217 AVRTSVPR 224 >UniRef50_P75591 Transcription elongation protein nusA n=2 Tax=Mycoplasma RepID=NUSA_MYCPN Length = 540 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/347 (27%), Positives = 180/347 (51%), Gaps = 24/347 (6%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 +L +++ V+ K L + + L++ALA T KK+ ++V V ID G + + V Sbjct: 12 LLQLIKNVAETKNLAIDDVVLCLKTALA-QTYKKHLNYVNVEVNIDFNKGLMQIEQLFDV 70 Query: 65 VDEVTQPTK---EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV---QKV 118 VD+ + E+ L A+ + +L +G + + V+ I ++++ QK+ Sbjct: 71 VDDNNEDYDDFLEMPLSEAKKLNPNLEVGGVLR---KPVSLKDIKGDLISKMVLLFNQKI 127 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILR--EDMLPRENFRPG 176 E V+ F G++I V+ ++ + D G V L + +P+ G Sbjct: 128 NETAFKTVMSDFINEVGQVIEARVEDIDTNK---DGGLKGYIVNLETTKGYMPKRELSKG 184 Query: 177 DRV---RGVLYSVRPEARGAQLF---VTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDP 230 +++ + L+ ++ + + ++ ++RS +L L PEI IEIK R P Sbjct: 185 EKLDIGKKYLFVIKEIQKQSSMWPITLSRSDSRLLEFLLNSNTPEIANGTIEIKKMERSP 244 Query: 231 GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAP 290 G+++K+AV + D +DP+ A +G +G R++ +S E GE IDIV+W+++ +F++NA+ P Sbjct: 245 GTKSKVAVISKDPVVDPIAAILGPKGERIRGISEEFNGEIIDIVIWNEDKLKFLVNAVLP 304 Query: 291 ADVA--SIVVDEDKHT-MDIAVEAGNLAQAIGRNGQNVRLASQLSGW 334 A+V +I+ D+++ T ++I V A +A G G N+RL S L+GW Sbjct: 305 AEVVGYNILQDDERDTSIEIVVPANQIANVFGFKGINIRLISNLTGW 351 >UniRef50_B5ZBC7 Transcription termination factor NusA n=15 Tax=Ureaplasma RepID=B5ZBC7_UREU1 Length = 458 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 90/344 (26%), Positives = 165/344 (47%), Gaps = 25/344 (7%) Query: 24 FEALESALATATKKKYEQEI---DVRVQIDRKSGDFDTFRRWLVVDEVTQPTK------- 73 E L S + A +K Y + + I+ K G + FR +VV+ + Sbjct: 25 LEVLSSIIKEAFEKTYLRTHPGENFETNINLKEGTINCFRNLVVVENEKAHNEDLETCLD 84 Query: 74 ---EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 EI L+ AR + + +GD ++ I F I ++ QK+ E V D + Sbjct: 85 DAVEILLDDARKINANAQIGDTIKQYISIDDFKSIEVGQIGSLLRQKITEIHNKRVADFW 144 Query: 131 REHEGEIITGVVKKVNRDN---------ISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 + ++I V ++N + + LD + R+D + E F+ G+ Sbjct: 145 KPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYLSRKDRIGDEKFKVGETYDF 204 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 ++ V+ ++R + ++R++PE++ E+ + EV +I IEIK AR G + K+AV TN Sbjct: 205 IIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIEIKKIARIAGFKTKVAVSTN 264 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE- 300 I+PV VG +G + ++S +L ERID++ + D+ F+ NA+ + ++V E Sbjct: 265 LLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRIFIANAIGLDKLKGLLVQEN 324 Query: 301 --DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 D+ + V +L IGR G N+RL ++++ W ++V T++ Sbjct: 325 ESDQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDVKTIE 368 >UniRef50_B3PNC2 Transcription elongation factor NusA n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PNC2_MYCA5 Length = 524 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 95/359 (26%), Positives = 172/359 (47%), Gaps = 20/359 (5%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR-- 60 KEI + +S K L ++ E + A+ Y+++ ++ D ++ +F Sbjct: 13 KEIFKAINDLSKLKNLNTNEVIELFKDAVKKVIMS-YDEDAELEFVFDEENNEFIVINHT 71 Query: 61 RWLVVDEVTQPTK-------EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV 113 +++V D +T K E+ L A+ + GD + + I TF + Q Sbjct: 72 KYVVQDPITAEDKDMLCRCIEVPLSIAKELKSTAKEGDVISETINFETFQKKDYIRILQS 131 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRE--DMLPRE 171 Q +RE E+ ++V + G+I+ V I +L + A + + Sbjct: 132 FNQSIRELEKKVIVGVYSLKIGQIVRAKVATPTTRGIFFELEDGTPAYMPSNANNRKLTA 191 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 N +PGD + + +V + Q+ V+ + +++ +L EVPEI +I+I AR PG Sbjct: 192 NLQPGDSIDVYIDNVGDADKNVQVLVSTVESKLIDKLLYKEVPEIANGLIDIVKIARIPG 251 Query: 232 SRAKIAVKTNDKR---IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM 288 RAKIA+ N+K ++ VG+ +G G+R+ V +L GER+D++ + + F+ NA+ Sbjct: 252 ERAKIAISANEKTPIGVEVVGSVLGENGSRINNVIQQLKGERLDVIEYSADIKTFIKNAI 311 Query: 289 APADVASIVVDEDKHTMD-----IAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 +PA V IV +++K + + V + AIG+ GQNV LAS L +L++ + D Sbjct: 312 SPAKVIDIVENKEKWQANYPAYIVVVPNQHNTLAIGKRGQNVVLASDLVRAKLDIFSQD 370 >UniRef50_Q96T48 Transcription termination-antitermination factor (Fragment) n=34 Tax=cellular organisms RepID=Q96T48_HUMAN Length = 172 Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 58/146 (39%), Positives = 90/146 (61%), Gaps = 1/146 (0%) Query: 156 NNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPE 215 +N E ++ + + +P + +R G+ +R V+ V E ++ ++R+ P L L EVPE Sbjct: 14 DNNELILPKSEQIPADQYRKGETIRAVIERVDNENNNPKIILSRTSPTFLERLLEQEVPE 73 Query: 216 IGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVL 275 I + +I IK AR PG RAKIAV++ D+RIDPVGACVG+RG+RV + EL E ID+V Sbjct: 74 IADGLIAIKKVARMPGERAKIAVESFDERIDPVGACVGVRGSRVHGIVRELCNENIDVVH 133 Query: 276 WDDNPAQFVINAMAPADVASIVVDED 301 W N + + + + ++SI DE+ Sbjct: 134 WTAN-TKLLSSVLKSCPISSIAPDEE 158 >UniRef50_C4XE33 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XE33_MYCFE Length = 538 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 132/241 (54%), Gaps = 8/241 (3%) Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD---NISLDLGNNAEAVILREDMLPR 170 I Q ++ ++ MV +Q+ G+ + V+ N + N+ + + +N A + + + Sbjct: 142 IAQAIKTLQKKMVFEQYSSKIGQTVKVVLNSKNSNGSWNVQI-VNSNVNAYLPAGLISTK 200 Query: 171 ENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDP 230 PG V+ V E + +Q+ V+ P+++ + + +PEI E +IE+ R P Sbjct: 201 RKANPGQYFDVVIEKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQP 260 Query: 231 GSRAKIAVKTN---DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINA 287 G R K+AVK + ID G+ +G G+R+ +S +L GE+ID++L+D++ ++V N+ Sbjct: 261 GERVKVAVKLAEGANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANS 320 Query: 288 MAPADVASIVV-DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA 346 ++P +++ DE ++ + V +L AIG+ G N LAS L+ +L+++++ D +A Sbjct: 321 ISPIQAVDVILKDERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIISITDAKA 380 Query: 347 K 347 + Sbjct: 381 Q 381 >UniRef50_Q4A579 N-utilization substance protein A n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A579_MYCS5 Length = 560 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 134/274 (48%), Gaps = 8/274 (2%) Query: 75 ITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHE 134 I L A+ +++ +GD + IE +FD+ + + E + + ++ Sbjct: 97 IGLSKAKEVNKNAKVGDLISYPIEFNSFDQKNLVAMRNGFSAAIAEKAKNRLFAKYHPLI 156 Query: 135 G-EIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGA 193 G +++ + K L L + A + + ++ PG + L SV +A+G Sbjct: 157 GSKLMVQIASKHENGGFFLKLEDGTSAYLPKNSIIKSVELNPGQKFDVFLNSVNIDAKGL 216 Query: 194 QLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR-----IDPV 248 L VT + PE + ++ E+PEI + I+ R PG R+K+ V N ++ D + Sbjct: 217 YLEVTMTSPEQVRDVLFREIPEIANGDLIIRNIQRIPGERSKVVVSLNPEKQSAHTHDLL 276 Query: 249 GACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIA 308 GA G + R+ VS L E+ID++ + +NP F+ NAM+P V +V + K + Sbjct: 277 GAMFGNKAQRINDVSKSLNNEKIDVIRFAENPKDFIRNAMSPCPVVDVV--KSKKGFYVI 334 Query: 309 VEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 V +++ AIG NG NV LAS+++ +++V++ + Sbjct: 335 VRPEDVSLAIGSNGVNVSLASKVTNNKIDVLSTE 368 >UniRef50_Q4A7E0 N-utilization substance protein A n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4A7E0_MYCH7 Length = 614 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 82/356 (23%), Positives = 165/356 (46%), Gaps = 23/356 (6%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR-RWL 63 I+ ++ V+ L E + + + A+ KK + + ++++ D + F F + Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79 Query: 64 VVDE-----------VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQ 112 VV+E V I L A+ D + + D +I +F+ Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139 Query: 113 VIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPREN 172 QK+ E R V +++ + ++ V ++ ++ + + +N Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 199 Query: 173 FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 232 + G + V+ +V + +Q+ ++ +++ + +PE+ + +EI + AR PG Sbjct: 200 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 259 Query: 233 RAKIAVKTNDK----RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM 288 R K+A++ + I +G+ VG G+RV A+S EL GE+I+++ +DDN +F++NAM Sbjct: 260 RCKVAIRRTEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 319 Query: 289 APADVASIVVDEDK--HTMD---IAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 +P+ V I V E K H + I V + AIG+NG NV+L + L+ ++ ++ Sbjct: 320 SPSKV--ICVKEFKIGHKLRRFIIVVPDFQHSLAIGKNGSNVKLVADLTRCQVQII 373 >UniRef50_C5J6Y1 N-utilization substance protein A n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6Y1_MYCCR Length = 623 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 129/256 (50%), Gaps = 9/256 (3%) Query: 85 ESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKK 144 E L +G+ V+ +I+ TFD+ Q+A Q Q E R + D++ + +I + Sbjct: 116 EDLQVGNRVKIEIDITTFDKSIFQSAIQNFKQTNSEINRQRIYDKYLPLKNTVILAKITN 175 Query: 145 VNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEM 204 +L + A + + + GD + V+ V ++ +Q+ V+ ++ Sbjct: 176 KIHSGYIFELVEDKVAAFMPSHYSIGQKLKVGDILEVVIEDVNKSSKQSQIIVSSKSIQL 235 Query: 205 LIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND----KRIDPVGACVGMRGARVQ 260 + +PE+ +EI + AR PG + K+AVK + I +GA +G +G R++ Sbjct: 236 VKNKIINAIPELQTNNLEIVSIARIPGEKCKVAVKKTNLPGSDHISELGAIIGEKGVRIE 295 Query: 261 AVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI----VVDEDKHTMDIAVEAGNLAQ 316 ++S +L GE+I+IV +D+N FV NA+APA V + + +++KH + V Sbjct: 296 SISQDLDGEQIEIVKYDENILTFVANAIAPARVVCVKEFKINNKNKHYT-VVVPDFQHTL 354 Query: 317 AIGRNGQNVRLASQLS 332 AIG+ G NV+LA+ L+ Sbjct: 355 AIGKKGSNVQLATDLT 370 >UniRef50_Q6MZ96 Possible nucleic acid binding protein n=3 Tax=Mycobacterium RepID=Q6MZ96_MYCUA Length = 182 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 84/142 (59%), Gaps = 3/142 (2%) Query: 202 PEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQA 261 P + VPE+ +++++I A AR PG RAK+AV++ I+PV C+G G R+ Sbjct: 31 PNPIPAALSARVPELAQQLVDIVAIARIPGVRAKVAVRSRVAGINPVSVCIGWGGLRIAD 90 Query: 262 VSTELGGERIDIVLWDDNPAQFVINAM-AP--ADVASIVVDEDKHTMDIAVEAGNLAQAI 318 V LGGERI +V + +PA +VIN + P A+ +E + + VEA + + + Sbjct: 91 VEKGLGGERIHVVAYHVDPATYVINVLGCPGTGTGAAAAAEERSRRIRVRVEAHDYPRTV 150 Query: 319 GRNGQNVRLASQLSGWELNVMT 340 G+ GQNVRLAS+L+G ++ ++ Sbjct: 151 GKAGQNVRLASKLTGQKIEILV 172 >UniRef50_C1E6R5 Predicted protein n=2 Tax=Micromonas RepID=C1E6R5_9CHLO Length = 897 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 15/237 (6%) Query: 112 QVIVQKVREAERAMVVDQFREHEGEII-TGVVKKVNRDNISLDLGNNAEAVILREDMLPR 170 + +++ E A+ D +R G+++ VV + R L L + A A + E+ +P Sbjct: 407 HMYTEELNEQVSAVAADSYRAKRGQMVECTVVAEGRRGEYLLRLDDGAMACLPEEESIPG 466 Query: 171 ENFRPGDRVRGVLYSVRPEA----RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 + + G+RV ++ V R A + V+ + +L E+ EVPE+ + IK+ Sbjct: 467 KKYSQGERVCALVMEVEDRTWAADRRAPVIVSTAIAGLLAEVLAAEVPEVARGDVVIKSV 526 Query: 227 ARDPGSRAKIAVKTND---KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQF 283 AR G +K+AV + K DPV ACVG+ +R++A+ LGGE I+ W DN Sbjct: 527 ARVSGKMSKVAVARQEGAEKVFDPVLACVGVENSRLRAIRERLGGEVCQILTWSDNREDM 586 Query: 284 VINAMAPADVASIVV----DEDKHTMD---IAVEAGNLAQAIGRNGQNVRLASQLSG 333 V A+ PA V +V D D +D V + A+AIG G NV+LA+ L+G Sbjct: 587 VAEALFPAAVHRVVKAEEDDMDGRALDKFIAYVSRFDEAKAIGAGGVNVKLAAALTG 643 >UniRef50_A5ZWL2 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZWL2_9FIRM Length = 162 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 87/145 (60%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKE++ ++ + EK + ++ + A+E +L A K + + +V V I+ ++ DF + Sbjct: 1 MNKELMEALDILEKEKNISKDTLLGAIEQSLIQACKNHFGKADNVHVTINPETCDFSVYA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V + V P EI+L A+ + + LGD ++ +I S F RI TQ AK VI+QK+RE Sbjct: 61 EREVKEFVDDPALEISLVDAQKINTNAELGDMIKVEIHSKEFGRIATQNAKNVILQKIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKV 145 ER ++ DQ+ E E++TG+V++V Sbjct: 121 EERKVLYDQYYGMEKEVVTGIVQRV 145 >UniRef50_A5IZE0 Transcription elongation protein NusA n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IZE0_MYCAP Length = 544 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/327 (22%), Positives = 153/327 (46%), Gaps = 34/327 (10%) Query: 66 DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV-------IVQKV 118 D+V+ + L A+ N+ D ++ +I+ + + T ++ I+Q + Sbjct: 89 DKVSLMLYNVPLSVAKKVKNDANVDDTIKIEIDLLALSKSTNPVVQKTPKIIESSILQAI 148 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLP------REN 172 ++ ++++V ++ E GE + +N S ++ + VI LP + Sbjct: 149 KKLQKSIVYTKYLEKIGETVKVTFISMNSKG-SWNVQIVDDGVIAH---LPANYVSAKRV 204 Query: 173 FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 232 PG V+ V + + +Q+ V+ P+++ ++ +PEI +IEI R PG Sbjct: 205 INPGSYGDVVIERVEKDTKLSQITVSLDSPKLIEKILYNNIPEISSGLIEIVNVQRIPGE 264 Query: 233 RAKIAVKTN--DKRIDPVGACVGMRGARVQAVSTELG-------GERIDIVLWDDNPAQF 283 R K K + ++ +D GA +G +R+ + +E+ E+ D++++ + +F Sbjct: 265 RTKAVFKASAGNEHLDVYGAIIGQDSSRINLIISEMNQGVNQADKEKFDVIVYTSDKKEF 324 Query: 284 VINAMAPADVASIV-VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 + M P V IV +E +++ + L+ AIG+ G N LAS++S L+++TV+ Sbjct: 325 IRRCMLPGQVVDIVPKNESQNSFYVITIKAGLSAAIGKKGANTMLASKVSHSNLDIITVE 384 Query: 343 DLQAKH-------QAEAHAAIDTFTKY 362 + + K+ AE ++++F +Y Sbjct: 385 EAKQKNIPFDESKIAEVEESLNSFRRY 411 >UniRef50_Q98R07 N-UTILIZATION SUBSTANCE PROTEIN A n=1 Tax=Mycoplasma pulmonis RepID=Q98R07_MYCPU Length = 550 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 17/287 (5%) Query: 75 ITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV---QKVREAERAMVVDQFR 131 + L AR E + +GD V+ QI+ D + K++ Q + + + V+D + Sbjct: 112 VRLSDARKEKSDVQIGDIVKKQIKH---DELKLNEVKKIFSIFQQNLAKEAKQSVLDFYS 168 Query: 132 EHEGEIITGVVKKV-NRDNISLDLGNNAEAVIL-REDMLPRENFRPGDRVRGVLYSVRPE 189 G+ I +++ NR +G+ V L +++ G ++ E Sbjct: 169 SKIGQKIQVKIEEFKNRGFFGSVVGDMETKVFLPNKEINKNSKIALGKKIDVYFIEFAKE 228 Query: 190 ARGAQ---LFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN---DK 243 + L V+ + P +I + + EI I IK AR G R KIAV+ + + Sbjct: 229 FQNKSETLLIVSLNSPLEVINVLKETFEEIANGSIIIKKIARKAGIRTKIAVEKSHLASE 288 Query: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI--VVDED 301 ++ +G +G G R + +S +L E+ID V++ ++ +F++ ++ PA+V SI VV E Sbjct: 289 GLNIIGTLIGQSGDRNKIISEKLNNEKIDFVIYKEDLQEFIVESLKPANVISIERVVPET 348 Query: 302 K-HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK 347 ++ V ++ AIG+ G N L+S+LS +N+ T+D + K Sbjct: 349 HIPAFNVVVPNSQMSVAIGKAGMNTILSSELSQSRINIETLDKAKEK 395 >UniRef50_C6SA73 N utilization substance protein A n=1 Tax=Neisseria meningitidis alpha153 RepID=C6SA73_NEIME Length = 136 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 59/77 (76%), Gaps = 3/77 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQE-IDVRVQIDRKSGDFDTF 59 M++E+L + EA+++EK + E +F+ALE AL+TA KKK ++E +DVRVQI+R +G++ TF Sbjct: 6 MSREMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTF 65 Query: 60 RRWLVV--DEVTQPTKE 74 RRWL+V ++ T P E Sbjct: 66 RRWLIVADEDYTYPDVE 82 >UniRef50_UPI00019018E3 transcription elongation factor NusA n=2 Tax=Mycobacterium tuberculosis RepID=UPI00019018E3 Length = 166 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 22/144 (15%) Query: 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV 65 +A + A+ ++ + ++ E ++SAL TA + + D R++IDRK+G Sbjct: 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTG----------- 53 Query: 66 DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 125 + AR DE+ NL +D E F RI TA+QV++Q+ R+AE Sbjct: 54 ---------VVRVIARETDEAGNLISEWDDTPEG--FGRIAATTARQVMLQRFRDAENER 102 Query: 126 VVDQFREHEGEIITGVVKKVNRDN 149 +F EGEI+ GV+++ +R N Sbjct: 103 TYGEFSTREGEIVAGVIQRDSRAN 126 >UniRef50_UPI0000D54FAD transcription elongation factor NusA n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54FAD Length = 187 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 15/181 (8%) Query: 320 RNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFS 379 + GQNV+LAS L+ E++++T ++ + Q E + LD+++ A +LV +G++ Sbjct: 4 KKGQNVKLASNLTSLEIDILTEEEESERRQLEFKEKSVLLAETLDVEDVIAQLLVTDGYT 63 Query: 380 TLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEES---LGDNKPADD-LL 435 T+E +A ++ L +IEG D + + +R+K + Q +EES L + K D+ L Sbjct: 64 TVESVAAESLENLEKIEGFDSTLAQEIIDRSK----SFIQDKEESDKKLIEEKINDEKLK 119 Query: 436 NLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE-------GLTDEKAGALIMAARNI 488 NL G++ + KLA + + D A+ +L D E L ++ A +IM AR+ Sbjct: 120 NLNGMNNSILAKLAKSNILNVNDFADLATFELIDKEEGILKELDLDEDIANNMIMEARSF 179 Query: 489 C 489 Sbjct: 180 W 180 >UniRef50_A4RY26 Predicted protein n=2 Tax=Ostreococcus RepID=A4RY26_OSTLU Length = 710 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 83/353 (23%), Positives = 143/353 (40%), Gaps = 52/353 (14%) Query: 21 EKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTF----RRWLVVDEVTQPTKEIT 76 ++ + + + T +K+ IDV V ID + G F R V+ TK T Sbjct: 242 DRGYRDMRGSALTVLQKEVRARIDVSVDIDVQRGRFAVLVQVVGRGGTVEREYDDTKFFT 301 Query: 77 LEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGE 136 R ++ L Y+ ++I+ T A+ + + F G Sbjct: 302 FNV-RRQNRMRTLIRYMSEEIK--------TGVAR-------------LATEDFVGQIGN 339 Query: 137 IITGVVK-KVNRDNISLDLGNNAEAVILREDMLPRENFRP---GDRVRGVLYSVRPEARG 192 ++ G ++ + + +D+ A VI E+ L N P GD + + V Sbjct: 340 VVDGTLRFRTETGSWMMDIKGGAAGVIPPEEQLLTYNDLPLKQGDELSCFVLDV-----D 394 Query: 193 AQLFVTRSK---------PEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 LF R + P ++ + R EVPE+ IEIK+ AR G K+AV + Sbjct: 395 QNLFTGREQTPVVLSMTIPALVGAIIREEVPEVARGEIEIKSIARMAGKVTKVAVALREG 454 Query: 244 RI---DPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADV----ASI 296 + V C+G + ++ + GGE + + W D+PA+ + +++ PA+V S Sbjct: 455 STSWSNAVETCLGEDQSILRRIRERCGGEVVHFLPWSDDPAELIKSSLFPAEVLRVEESF 514 Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQ 349 K V+ +L +AIG G NV+L + L+ V+ VD+ Q Sbjct: 515 PDGTQKRKFTAYVKEVDLRRAIGAGGNNVKLCASLTN-AFIVIEVDETAGNTQ 566 >UniRef50_D0PA07 Transcription elongation factor NusA n=4 Tax=Rhizobiales RepID=D0PA07_BRUSU Length = 174 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 58/105 (55%) Query: 363 LDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQE 422 L++DE VL EGF+++EELAYV E+ I+G DE T +++RA+ L I Q+ Sbjct: 4 LNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIEAEQD 63 Query: 423 ESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDL 467 + AD+L L G+ + + GV T+ED A +DDL Sbjct: 64 ARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDL 108 >UniRef50_P15739 NusA protein homolog n=9 Tax=Halobacteriaceae RepID=NUSA_HALSA Length = 139 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 9/101 (8%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQ--FVINAMAPADVASIVVDEDKHTM 305 +GA +G G+RV A+ LG +VL +D P FV NA++PA V ++ V E+ T+ Sbjct: 43 MGAAIGDGGSRVDALEATLGRS---VVLVEDAPTAEGFVANALSPAAVYNVTVSENDTTV 99 Query: 306 DIA-VEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ 345 A V + AIG +G N+ A +L+ + +DD+Q Sbjct: 100 AYAEVAHEDKGVAIGADGTNIETAKELAARHFD---IDDIQ 137 >UniRef50_O27128 Transcription termination factor NusA n=6 Tax=Euryarchaeota RepID=O27128_METTH Length = 143 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 9/116 (7%) Query: 229 DPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM 288 D R VK D +G +G +G+ V V L + ++++ ++P +F+ N M Sbjct: 31 DENGRVTFLVKKGD-----MGLAIGKKGSTVAKVQKALD-KGVEVIEHSNDPVEFIKNLM 84 Query: 289 APADVASIVVDEDKHTMDIA---VEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 APA V SI + + ++ IA + N AIGR GQN+ A L+ + N+ + Sbjct: 85 APAKVRSIRILQKENGEKIATVETDPKNKRIAIGRGGQNIERARLLARRQHNISNI 140 >UniRef50_D1YXX1 NusA protein homolog n=9 Tax=Euryarchaeota RepID=D1YXX1_METPS Length = 147 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 11/120 (9%) Query: 232 SRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPA 291 SR VK+ D +G +G G + V ++G ++++ ++++P +F+ N PA Sbjct: 36 SRIVFVVKSGD-----MGLAIGKNGNNINRVKKQIG-RHVEVIEYNEDPKEFIKNLFQPA 89 Query: 292 DVASIVVD-EDKHTMDIA-VEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQ 349 V +IV+ + + T+ I V + AIG+NG+N+ L+ TVDD+ +Q Sbjct: 90 TVKNIVISTKGERTLAIVDVATKDKGLAIGKNGRNINKVKLLAQRH---HTVDDVIINNQ 146 >UniRef50_Q2FPJ7 NusA family KH domain protein n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FPJ7_METHJ Length = 142 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 5/97 (5%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDI 307 +G +G +G ++ S G +RI+ V + D+PAQF+ N PA V + D H I Sbjct: 45 MGYAIGKKGVNIKKASESFG-KRIEAVEYSDDPAQFIRNCFHPAQVKEVQFS-DYHGEQI 102 Query: 308 A---VEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 A + + +AIG+ G+N+ L+ E ++ + Sbjct: 103 AHVVIRDEDRGRAIGKAGKNLNRTKMLALREHDIQNI 139 >UniRef50_Q2S1M7 Ribosomal protein S1, putative n=2 Tax=Rhodothermaceae RepID=Q2S1M7_SALRD Length = 871 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 12/106 (11%) Query: 126 VVDQFRE---------HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPG 176 V DQFR+ E +I+ G V +VN D + +D+G ++ ++ R D E PG Sbjct: 178 VYDQFRDVVDETSIDVREQDIVEGRVLRVNEDYVVIDIGYKSDGIVSR-DEFGEEEIHPG 236 Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIE 222 D V +Y R E R QL +++ + + + R+E EEVIE Sbjct: 237 DTVE--VYLERKEDRDGQLVLSKEQADKVRRWQRVEEIYENEEVIE 280 >UniRef50_C7NTX6 NusA family KH domain protein n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NTX6_HALUD Length = 142 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 10/102 (9%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDD--NPAQFVINAMAPADVASIVVDE-DKHT 304 VG +G G V + LG D+ L +D P FV NA+APA V + ++E D Sbjct: 45 VGKAIGRDGETVARIEDRLGR---DVTLVEDAPTPEGFVANALAPAAVYDVTIEERDGER 101 Query: 305 MDIA-VEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ 345 + A V+ + AIG G+ + LA +L+G +DD+Q Sbjct: 102 VAFADVDEADTGAAIGTEGRTIELARRLAGRHFE---IDDIQ 140 >UniRef50_P11523 NusA protein homolog n=15 Tax=Thermoprotei RepID=NUSA_SULAC Length = 143 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 5/101 (4%) Query: 245 IDP--VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV--DE 300 I+P +G +G G V+ + +L + ++IV + +N V N M+PA V +I V Sbjct: 41 INPESMGVAIGKNGLNVRKLE-KLINKSVEIVGYQENLEDLVKNLMSPARVKTIKVVQSN 99 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 K T+ I VE + AIG+NG+NV A + L++ +V Sbjct: 100 SKKTVYITVEPQDKGIAIGKNGRNVERAKLILKRYLDIDSV 140 >UniRef50_A2ST95 NusA family KH domain protein n=5 Tax=Methanomicrobiales RepID=A2ST95_METLZ Length = 151 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV-DEDKHTMD 306 +G +G G ++ +S LG +RI++V +D++ F+ N PA+VAS+ D+ M Sbjct: 48 MGIAIGKGGDNIKKMSRVLG-KRIEMVEFDEDREVFIANMFKPAEVASVSYGGRDEPVMI 106 Query: 307 IAVEAGNLAQAIGRNGQNVRLASQL 331 E G+ AIG+ G + A L Sbjct: 107 TVPERGDFGLAIGKGGSTIEKARIL 131 >UniRef50_A8MB76 Putative ski2-type helicase n=1 Tax=Caldivirga maquilingensis IC-167 RepID=HELS_CALMQ Length = 756 Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 434 LLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNIC 489 ++NLEGV R A L A G ++EDLA+ + DL I G+ D+ AG++I A + Sbjct: 672 VVNLEGVGRVRARALYAAGYRSIEDLAKANVSDLTRIRGIGDKIAGSIIEQAHQLV 727 >UniRef50_B1L737 NusA family KH domain protein n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L737_KORCO Length = 158 Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 5/90 (5%) Query: 248 VGACVGMRGARVQAVSTELGGER---IDIVLWDDNPAQFVINAMAPADVASI-VVDEDKH 303 +G VG G +++A+ L G+ I++V +DD+P F+ N ++PA V + +V +D Sbjct: 49 LGRAVGRGGRKLKAMKRFLKGDLDYDIEVVEFDDSPEGFIANLLSPARVQKVKIVHQDDG 108 Query: 304 TMDIA-VEAGNLAQAIGRNGQNVRLASQLS 332 IA V + + AIGRNG+ ++ L+ Sbjct: 109 ITAIAYVLDEDKSLAIGRNGRRIKRTRLLA 138 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D0KHM4 NusA antitermination factor n=18 Tax=Proteobacte... 566 e-160 UniRef50_Q1LSK7 Transcription termination factor NusA n=7 Tax=Ga... 555 e-156 UniRef50_A0LE21 NusA antitermination factor n=14 Tax=Bacteria Re... 553 e-156 UniRef50_Q3J9B5 NusA antitermination factor n=3 Tax=Gammaproteob... 534 e-150 UniRef50_Q83BS0 Transcription elongation protein nusA n=504 Tax=... 529 e-148 UniRef50_Q0C5Z7 Transcription termination factor NusA n=110 Tax=... 525 e-147 UniRef50_A4G7S8 Transcription elongation protein nusA (N utiliza... 514 e-144 UniRef50_Q1V1E6 Transcription termination factor n=3 Tax=Candida... 502 e-140 UniRef50_Q28WF5 NusA antitermination factor n=74 Tax=Bacteria Re... 495 e-138 UniRef50_B8FCY4 NusA antitermination factor n=3 Tax=Desulfobacte... 495 e-138 UniRef50_C4GHM6 Putative uncharacterized protein n=1 Tax=Kingell... 493 e-138 UniRef50_Q9ZCZ7 Transcription elongation protein nusA n=20 Tax=A... 488 e-136 UniRef50_Q1DAM8 Transcription termination factor NusA n=11 Tax=B... 487 e-136 UniRef50_A5EWZ0 Transcription termination factor n=1 Tax=Dichelo... 475 e-132 UniRef50_A8ZZ66 NusA antitermination factor n=3 Tax=Deltaproteob... 472 e-131 UniRef50_Q1MQY9 Transcription elongation factor n=2 Tax=Desulfov... 470 e-131 UniRef50_D1U699 NusA antitermination factor n=1 Tax=Desulfovibri... 467 e-130 UniRef50_B6AR17 Transcription termination factor (NusA) n=4 Tax=... 466 e-130 UniRef50_Q6MMS7 N utilization substance protein A n=1 Tax=Bdello... 466 e-130 UniRef50_Q9KA74 Transcription elongation protein nusA n=309 Tax=... 464 e-129 UniRef50_C6C0D5 NusA antitermination factor n=7 Tax=Deltaproteob... 464 e-129 UniRef50_B8J1Y6 NusA antitermination factor n=5 Tax=Desulfovibri... 461 e-128 UniRef50_C9KKC1 Transcription termination factor NusA n=1 Tax=Mi... 459 e-128 UniRef50_B9XFC0 NusA antitermination factor n=1 Tax=bacterium El... 459 e-127 UniRef50_Q01W32 NusA antitermination factor n=3 Tax=Bacteria Rep... 458 e-127 UniRef50_A0Q8F4 Transcription elongation factor n=17 Tax=Francis... 456 e-127 UniRef50_D1AUG3 Transcription elongation factor n=5 Tax=Anaplasm... 453 e-126 UniRef50_D2L1U7 NusA antitermination factor n=1 Tax=Desulfovibri... 452 e-125 UniRef50_A6TRL0 NusA antitermination factor n=5 Tax=Firmicutes R... 449 e-124 UniRef50_B3WER8 Transcription elongation protein NusA (Transcrip... 444 e-123 UniRef50_C4XIM5 Transcription elongation protein NusA n=4 Tax=De... 444 e-123 UniRef50_Q5GS98 Transcription elongation factor, NusA n=13 Tax=R... 440 e-122 UniRef50_B3DXW5 Transcription elongation factor n=2 Tax=Verrucom... 438 e-121 UniRef50_B5JHK3 Transcription termination factor NusA n=1 Tax=Ve... 434 e-120 UniRef50_C1F696 Transcription termination factor NusA n=1 Tax=Ac... 433 e-120 UniRef50_D1N2Z3 NusA antitermination factor n=1 Tax=Victivallis ... 432 e-119 UniRef50_B2KC94 NusA antitermination factor n=1 Tax=Elusimicrobi... 431 e-119 UniRef50_B2UQQ4 NusA antitermination factor n=2 Tax=Verrucomicro... 428 e-118 UniRef50_B1ZX42 NusA antitermination factor n=1 Tax=Opitutus ter... 427 e-118 UniRef50_A9AV46 NusA antitermination factor n=11 Tax=Bacteria Re... 426 e-118 UniRef50_Q044C0 Transcription elongation factor n=45 Tax=Bacilli... 423 e-116 UniRef50_UPI0001C3544A transcription elongation factor NusA n=1 ... 422 e-116 UniRef50_D1KAN2 Transcription elongation factor n=1 Tax=uncultur... 422 e-116 UniRef50_Q2GDP1 N utilization substance protein A n=2 Tax=Neoric... 420 e-116 UniRef50_A6NTX6 Putative uncharacterized protein n=2 Tax=Bacteri... 419 e-115 UniRef50_C1SH20 Transcription termination factor NusA n=1 Tax=De... 418 e-115 UniRef50_B5YEH2 Transcription termination factor NusA n=2 Tax=Di... 418 e-115 UniRef50_D1B5D7 NusA antitermination factor n=3 Tax=Synergistace... 418 e-115 UniRef50_B5YJX4 Transcription termination factor NusA n=1 Tax=Th... 418 e-115 UniRef50_B2S4C9 N utilization substance protein A n=4 Tax=Trepon... 415 e-114 UniRef50_D1PLN7 Transcription termination factor NusA n=2 Tax=Cl... 414 e-114 UniRef50_C1A8N6 Transcription elongation protein NusA n=1 Tax=Ge... 412 e-113 UniRef50_B1GZN5 Transcription antitermination factor NusA n=1 Ta... 410 e-113 UniRef50_C3RL60 Transcription termination-antitermination factor... 410 e-113 UniRef50_P48514 Transcription elongation protein nusA n=8 Tax=De... 409 e-113 UniRef50_B2GBN4 Transcription termination-antitermination factor... 409 e-112 UniRef50_A8SMZ8 Putative uncharacterized protein n=1 Tax=Parvimo... 409 e-112 UniRef50_C2ES49 Transcription termination factor NusA n=1 Tax=La... 406 e-111 UniRef50_D2R7W7 NusA antitermination factor n=1 Tax=Pirellula st... 405 e-111 UniRef50_Q3Z7U1 N utilization substance protein A n=5 Tax=Dehalo... 403 e-111 UniRef50_C1TMK5 Transcription termination factor NusA n=1 Tax=De... 402 e-110 UniRef50_C7RGN8 NusA antitermination factor n=7 Tax=Clostridiale... 402 e-110 UniRef50_A8F3W1 NusA antitermination factor n=12 Tax=Thermotogac... 401 e-110 UniRef50_UPI0001C31DB6 NusA antitermination factor n=1 Tax=Conex... 399 e-109 UniRef50_B0B9K5 N utilization substance protein A n=16 Tax=Chlam... 398 e-109 UniRef50_A6CF45 Transcription elongation factor NusA n=3 Tax=Pla... 390 e-107 UniRef50_D2QL25 NusA antitermination factor n=14 Tax=Bacteria Re... 385 e-105 UniRef50_A3CQ21 N utilization substance protein A, putative n=42... 384 e-105 UniRef50_Q7URQ7 N utilization substance protein A n=1 Tax=Rhodop... 381 e-104 UniRef50_Q1AW56 NusA antitermination factor n=1 Tax=Rubrobacter ... 381 e-104 UniRef50_C0QTL7 Transcription termination factor NusA n=2 Tax=Hy... 381 e-104 UniRef50_C1QB15 Transcription termination factor NusA n=2 Tax=Br... 379 e-103 UniRef50_Q04GN3 Transcription elongation factor n=18 Tax=Lactoba... 379 e-103 UniRef50_C7LXY2 NusA antitermination factor n=1 Tax=Acidimicrobi... 378 e-103 UniRef50_D1BJ68 Transcription termination factor NusA n=5 Tax=Ac... 378 e-103 UniRef50_B0SH17 Transcription elongation factor n=6 Tax=Leptospi... 375 e-102 UniRef50_C7H125 Transcription termination factor NusA n=1 Tax=Eu... 375 e-102 UniRef50_UPI00016C59C1 transcription elongation factor NusA n=1 ... 374 e-102 UniRef50_C6JIH8 Transcription elongation factor NusA n=2 Tax=Fus... 373 e-102 UniRef50_Q2S1N6 N utilization substance protein A n=5 Tax=cellul... 373 e-101 UniRef50_A6DKQ2 Transcription elongation factor NusA n=1 Tax=Len... 370 e-101 UniRef50_B1CB56 Putative uncharacterized protein n=1 Tax=Anaerof... 369 e-100 UniRef50_B2V8D7 NusA antitermination factor n=2 Tax=Sulfurihydro... 367 e-100 UniRef50_Q1Q1G4 Strongly similar to transcription elongation pro... 365 2e-99 UniRef50_A4E6U9 Putative uncharacterized protein n=1 Tax=Collins... 364 3e-99 UniRef50_UPI0001C373AB NusA antitermination factor n=1 Tax=Rumin... 364 4e-99 UniRef50_B8DW42 N utilization substance-like protein n=11 Tax=Bi... 364 4e-99 UniRef50_C7NH16 Transcription termination factor NusA n=55 Tax=A... 362 1e-98 UniRef50_B2J957 NusA antitermination factor n=8 Tax=Cyanobacteri... 362 1e-98 UniRef50_C6X2U0 Transcription termination protein NusA n=2 Tax=F... 361 3e-98 UniRef50_C4Z5N4 N utilization substance protein A n=1 Tax=Eubact... 361 4e-98 UniRef50_D2MPS9 Transcription termination factor NusA n=3 Tax=Er... 360 5e-98 UniRef50_C9RKT3 NusA antitermination factor n=1 Tax=Fibrobacter ... 359 1e-97 UniRef50_B0MQX1 Putative uncharacterized protein n=1 Tax=Eubacte... 359 2e-97 UniRef50_C8W720 NusA antitermination factor n=9 Tax=Coriobacteri... 356 9e-97 UniRef50_B3SFF1 Putative uncharacterized protein (Fragment) n=1 ... 356 1e-96 UniRef50_D0J8H0 Transcription elongation factor NusA n=36 Tax=Ba... 352 2e-95 UniRef50_B0VFB8 Transcription elongation factor NusA n=1 Tax=Can... 351 3e-95 UniRef50_D1AL29 NusA antitermination factor n=10 Tax=Fusobacteri... 350 7e-95 UniRef50_P0A5M3 Transcription elongation protein nusA n=50 Tax=A... 347 5e-94 UniRef50_D2NNU7 Transcription elongation factor n=12 Tax=Actinob... 347 6e-94 UniRef50_Q0H8S9 NusA n=2 Tax=Spiroplasma RepID=Q0H8S9_SPIKU 345 2e-93 UniRef50_O51740 Transcription elongation protein nusA n=21 Tax=B... 343 8e-93 UniRef50_B7K5I0 NusA antitermination factor n=9 Tax=Cyanobacteri... 343 8e-93 UniRef50_Q0I7K4 Transcription termination factor NusA n=43 Tax=c... 336 1e-90 UniRef50_Q2SSE3 Transcription elongation protein nusA, putative ... 330 8e-89 UniRef50_C7NAM6 NusA antitermination factor n=6 Tax=Fusobacteria... 329 1e-88 UniRef50_A9NF09 Transcription termination factor n=16 Tax=Achole... 321 5e-86 UniRef50_D1AY66 NusA antitermination factor n=1 Tax=Streptobacil... 319 1e-85 UniRef50_A6DBC4 Transcription elongation factor NusA n=1 Tax=Cam... 315 2e-84 UniRef50_Q8EWU2 N-utilization substance protein A n=1 Tax=Mycopl... 314 4e-84 UniRef50_B9L7T5 Transcription termination factor NusA n=1 Tax=Na... 314 6e-84 UniRef50_A7I0Q5 Transcription termination factor NusA n=2 Tax=Ca... 314 6e-84 UniRef50_A6QCD2 Transcription termination factor NusA n=17 Tax=E... 314 7e-84 UniRef50_B1VGB9 N utilization substance protein A n=2 Tax=Coryne... 313 1e-83 UniRef50_A8ERE7 Transcription termination factor NusA n=15 Tax=E... 310 8e-83 UniRef50_Q83N21 N utilization substance protein A n=2 Tax=Trophe... 304 7e-81 UniRef50_C3XEZ2 Transcription termination factor NusA n=2 Tax=He... 301 4e-80 UniRef50_Q3B1Z7 NusA antitermination factor n=12 Tax=Chlorobiace... 299 1e-79 UniRef50_Q7VGP8 Transcription termination factor NusA n=1 Tax=He... 296 1e-78 UniRef50_P75591 Transcription elongation protein nusA n=2 Tax=My... 290 7e-77 UniRef50_Q7NBZ6 NusA-homolog n=1 Tax=Mycoplasma gallisepticum Re... 287 8e-76 UniRef50_D1J8W2 Transcription elongation protein NusA n=1 Tax=My... 285 3e-75 UniRef50_Q9ZJA6 Transcription elongation protein nusA n=16 Tax=H... 284 8e-75 UniRef50_B3PNC2 Transcription elongation factor NusA n=1 Tax=Myc... 278 3e-73 UniRef50_Q6KIE0 N-utilization substance protein a n=1 Tax=Mycopl... 278 4e-73 UniRef50_B4U6H2 NusA antitermination factor n=3 Tax=Aquificaceae... 276 1e-72 UniRef50_B5Y929 Transcription termination factor NusA n=1 Tax=Co... 275 2e-72 UniRef50_B5ZBC7 Transcription termination factor NusA n=15 Tax=U... 271 3e-71 UniRef50_D2SDW8 NusA domain protein n=1 Tax=Geodermatophilus obs... 271 5e-71 UniRef50_Q4A7E0 N-utilization substance protein A n=5 Tax=Mycopl... 268 3e-70 UniRef50_C7LKE4 Transcription elongation factor NusA n=1 Tax=Can... 263 7e-69 UniRef50_Q4A579 N-utilization substance protein A n=2 Tax=Mycopl... 262 2e-68 UniRef50_Q0EZ71 Transcription elongation factor NusA n=1 Tax=Mar... 258 5e-67 UniRef50_C5J6Y1 N-utilization substance protein A n=1 Tax=Mycopl... 243 9e-63 UniRef50_C4XE33 Putative uncharacterized protein n=1 Tax=Mycopla... 233 2e-59 UniRef50_A5IZE0 Transcription elongation protein NusA n=1 Tax=My... 228 4e-58 UniRef50_Q98R07 N-UTILIZATION SUBSTANCE PROTEIN A n=1 Tax=Mycopl... 225 4e-57 UniRef50_C1E6R5 Predicted protein n=2 Tax=Micromonas RepID=C1E6R... 212 2e-53 UniRef50_A4RY26 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 205 5e-51 UniRef50_Q96T48 Transcription termination-antitermination factor... 197 8e-49 UniRef50_A5ZWL2 Putative uncharacterized protein n=1 Tax=Ruminoc... 169 2e-40 UniRef50_B9PBC3 Predicted protein (Fragment) n=1 Tax=Populus tri... 158 5e-37 UniRef50_Q6MZ96 Possible nucleic acid binding protein n=3 Tax=My... 154 5e-36 UniRef50_UPI0000D54FAD transcription elongation factor NusA n=1 ... 125 5e-27 UniRef50_UPI00019018E3 transcription elongation factor NusA n=2 ... 124 5e-27 UniRef50_D0PA07 Transcription elongation factor NusA n=4 Tax=Rhi... 104 7e-21 UniRef50_C6SA73 N utilization substance protein A n=1 Tax=Neisse... 84 8e-15 UniRef50_P15739 NusA protein homolog n=9 Tax=Halobacteriaceae Re... 78 8e-13 Sequences not found previously or not previously below threshold: UniRef50_UPI0001BCE222 transcription elongation factor NusA n=1 ... 76 4e-12 UniRef50_Q2FPJ7 NusA family KH domain protein n=1 Tax=Methanospi... 67 2e-09 UniRef50_D1YXX1 NusA protein homolog n=9 Tax=Euryarchaeota RepID... 65 6e-09 UniRef50_A8MB79 NusA family KH domain protein n=6 Tax=Thermoprot... 64 1e-08 UniRef50_A2SQE3 NusA family KH domain protein n=4 Tax=Methanomic... 64 2e-08 UniRef50_O27128 Transcription termination factor NusA n=6 Tax=Eu... 63 2e-08 UniRef50_P11523 NusA protein homolog n=15 Tax=Thermoprotei RepID... 63 3e-08 UniRef50_A1RWW2 NusA family KH domain protein n=1 Tax=Thermofilu... 63 3e-08 UniRef50_B1L737 NusA family KH domain protein n=1 Tax=Candidatus... 62 4e-08 UniRef50_B5YEY5 Ribosomal protein S1, putative n=2 Tax=Dictyoglo... 59 5e-07 UniRef50_C7NTX6 NusA family KH domain protein n=1 Tax=Halorhabdu... 58 7e-07 UniRef50_D2RUW3 NusA family KH domain protein n=2 Tax=Halobacter... 58 8e-07 UniRef50_A2ST95 NusA family KH domain protein n=5 Tax=Methanomic... 57 2e-06 UniRef50_A1HTW2 Hydroxymethylbutenyl pyrophosphate reductase n=4... 56 3e-06 UniRef50_P29157 NusA protein homolog n=12 Tax=Euryarchaeota RepI... 55 5e-06 UniRef50_A9A465 NusA family KH domain protein n=6 Tax=Thaumarcha... 55 5e-06 UniRef50_B5IGJ7 NusA family KH domain protein n=1 Tax=Acidulipro... 54 9e-06 UniRef50_D1JEK5 Putative NusA protein homolog n=1 Tax=uncultured... 54 1e-05 UniRef50_Q2S1M7 Ribosomal protein S1, putative n=2 Tax=Rhodother... 53 2e-05 UniRef50_C7NV64 Ribosomal protein L32e n=2 Tax=Halobacteriaceae ... 53 3e-05 UniRef50_Q9YAU4 NusA protein homolog n=1 Tax=Aeropyrum pernix Re... 52 4e-05 UniRef50_P14026 NusA protein homolog n=8 Tax=Methanococcales Rep... 52 5e-05 UniRef50_B1LBI3 RNA binding S1 domain protein n=5 Tax=Thermotoga... 52 6e-05 UniRef50_B0VFT2 Putative Ribosomal protein S1 n=1 Tax=Candidatus... 51 9e-05 UniRef50_D1CBU2 RNA binding S1 domain protein n=1 Tax=Thermobacu... 51 1e-04 UniRef50_C5A6V0 RecJ-like phosphoesterase, containing RNA bindin... 50 2e-04 UniRef50_Q2RIU7 Hydroxymethylbutenyl pyrophosphate reductase n=1... 50 2e-04 UniRef50_Q2LU20 Hypothetical cytosolic protein n=1 Tax=Syntrophu... 50 2e-04 UniRef50_C7NE91 RNA binding S1 domain protein n=3 Tax=Leptotrich... 50 2e-04 UniRef50_Q5JET4 Pko radA intein n=2 Tax=Euryarchaeota RepID=RADA... 50 2e-04 UniRef50_B5Y9T3 Ribosomal protein S1 n=1 Tax=Coprothermobacter p... 50 2e-04 UniRef50_Q9YFQ8 Putative ski2-type helicase n=1 Tax=Aeropyrum pe... 50 2e-04 UniRef50_D1XBA7 RNA binding S1 domain protein n=2 Tax=Streptomyc... 50 3e-04 UniRef50_P46836 30S ribosomal protein S1 n=166 Tax=Actinobacteri... 49 3e-04 UniRef50_D1N749 Ribosomal protein S1 n=1 Tax=Victivallis vadensi... 49 4e-04 UniRef50_C0GDV0 Hydroxymethylbutenyl pyrophosphate reductase n=1... 49 4e-04 UniRef50_A4J3N5 Hydroxymethylbutenyl pyrophosphate reductase n=3... 49 5e-04 UniRef50_UPI00017435B0 LytB protein n=1 Tax=candidate division T... 49 5e-04 UniRef50_B1I3Y7 Hydroxymethylbutenyl pyrophosphate reductase n=3... 49 5e-04 UniRef50_B3TCT6 Putative S1 RNA binding domain protein n=2 Tax=r... 49 6e-04 UniRef50_B4D0J0 Amino acid adenylation domain protein n=1 Tax=Ch... 48 6e-04 UniRef50_D1CF08 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 48 6e-04 UniRef50_A4QP01 Pdcd11 protein n=4 Tax=Clupeocephala RepID=A4QP0... 48 7e-04 UniRef50_Q58447 NusA protein homolog n=4 Tax=Methanocaldococcus ... 48 7e-04 UniRef50_Q1IY12 RNA binding S1 n=9 Tax=Deinococci RepID=Q1IY12_D... 48 8e-04 UniRef50_Q5SJ64 DNA polymerase beta family (X family) n=4 Tax=Th... 48 9e-04 UniRef50_UPI0001C3232B RNA binding S1 domain protein n=1 Tax=Con... 48 0.001 UniRef50_A4YCN4 DNA repair and recombination protein radA n=12 T... 48 0.001 UniRef50_A8AB83 DNA repair and recombination protein radA n=16 T... 48 0.001 UniRef50_A8F7S1 RNA binding S1 domain protein n=1 Tax=Thermotoga... 47 0.001 UniRef50_Q67NT8 30S ribosomal protein S1 n=1 Tax=Symbiobacterium... 47 0.002 UniRef50_B9L032 30S ribosomal protein S1 n=1 Tax=Thermomicrobium... 47 0.002 UniRef50_C6JH83 Putative uncharacterized protein n=2 Tax=Clostri... 47 0.002 UniRef50_A9B766 RNA binding S1 domain protein n=6 Tax=Chloroflex... 47 0.002 UniRef50_Q5UPZ0 DNA ligase n=1 Tax=Acanthamoeba polyphaga mimivi... 46 0.003 UniRef50_C1SLB2 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 46 0.003 UniRef50_B5YH71 30S ribosomal protein S1 n=1 Tax=Thermodesulfovi... 46 0.003 UniRef50_A9KLR6 Hydroxymethylbutenyl pyrophosphate reductase n=5... 46 0.003 UniRef50_Q18EU1 DNA repair and recombination protein radA n=165 ... 46 0.004 UniRef50_C1SHA0 Putative uncharacterized protein n=2 Tax=Denitro... 46 0.004 UniRef50_A7HME7 Hydroxymethylbutenyl pyrophosphate reductase n=1... 46 0.004 UniRef50_C6XS49 RNA binding S1 domain protein n=62 Tax=Bacteroid... 46 0.004 UniRef50_C7RHT6 Hydroxymethylbutenyl pyrophosphate reductase n=8... 46 0.005 UniRef50_B8JIP9 Programmed cell death 11 n=5 Tax=Clupeocephala R... 45 0.005 UniRef50_A3MSA1 Putative ski2-type helicase n=5 Tax=Thermoprotea... 45 0.005 UniRef50_A8P9F6 KH domain containing protein n=1 Tax=Brugia mala... 45 0.006 UniRef50_Q54L26 Putative uncharacterized protein n=1 Tax=Dictyos... 45 0.006 UniRef50_D2R4L6 Ribosomal protein S1 n=7 Tax=Planctomycetales Re... 45 0.007 UniRef50_B6AR90 Ribosomal protein S1 n=1 Tax=Leptospirillum sp. ... 45 0.007 UniRef50_A2SR54 DNA repair and recombination protein radA n=31 T... 45 0.007 UniRef50_D1VSI0 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 45 0.007 UniRef50_A8Q764 KH domain containing protein n=1 Tax=Brugia mala... 45 0.008 UniRef50_Q06609 DNA repair protein RAD51 homolog 1 n=385 Tax=Euk... 45 0.008 UniRef50_B8J034 RNA binding S1 domain protein n=2 Tax=Desulfovib... 45 0.008 UniRef50_Q3YRK4 SSU ribosomal protein S1P n=21 Tax=Rickettsiales... 45 0.008 UniRef50_B9MRX3 Hydroxymethylbutenyl pyrophosphate reductase n=1... 44 0.009 UniRef50_A2BXB3 Putative uncharacterized protein n=2 Tax=Prochlo... 44 0.009 UniRef50_B0SDD9 30S Ribosomal protein S1 n=6 Tax=Leptospira RepI... 44 0.009 UniRef50_Q977W1 Topoisomerase V n=1 Tax=Methanopyrus kandleri Re... 44 0.009 UniRef50_Q30ZT8 SSU ribosomal protein S1P n=1 Tax=Desulfovibrio ... 44 0.010 UniRef50_C1DT56 Ribosomal protein S01 n=3 Tax=Sulfurihydrogenibi... 44 0.010 UniRef50_Q027A8 SSU ribosomal protein S1P n=2 Tax=Acidobacteria ... 44 0.010 UniRef50_Q0EYT6 Ribosomal protein S1 n=1 Tax=Mariprofundus ferro... 44 0.010 UniRef50_B0K198 RNA binding S1 domain protein n=7 Tax=Thermoanae... 44 0.010 UniRef50_O73946 Putative ski2-type helicase n=3 Tax=Pyrococcus R... 44 0.011 UniRef50_C1JJY0 ORF1 n=1 Tax=Halorubrum pleomorphic virus 1 RepI... 44 0.011 UniRef50_C0QT24 Ribosomal protein S01 n=1 Tax=Persephonella mari... 44 0.011 UniRef50_D1B5G8 RNA binding S1 domain protein n=3 Tax=Synergista... 44 0.012 UniRef50_B5IRN8 DHH family n=4 Tax=Thermococcaceae RepID=B5IRN8_... 44 0.012 UniRef50_D1ZWZ1 Whole genome shotgun sequence assembly, contig_1... 44 0.013 UniRef50_A1RYZ3 Rad51-like protein n=1 Tax=Thermofilum pendens H... 44 0.014 UniRef50_Q1MQB8 Ribosomal protein S1 n=2 Tax=Desulfovibrionaceae... 44 0.015 UniRef50_A2DXE9 Putative uncharacterized protein n=1 Tax=Trichom... 44 0.015 UniRef50_A8LST4 Putative uncharacterized protein n=1 Tax=Dinoros... 44 0.015 UniRef50_Q18DN4 Halomucin n=2 Tax=Haloquadratum walsbyi RepID=HM... 44 0.015 UniRef50_Q9Y2W6 Tudor and KH domain-containing protein n=24 Tax=... 44 0.016 UniRef50_B2XT45 30S ribosomal protein S1 n=2 Tax=Heterosigma aka... 44 0.016 UniRef50_B7IE33 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 44 0.016 UniRef50_B8FI70 Ribosomal protein S1 n=14 Tax=Proteobacteria Rep... 44 0.016 UniRef50_C4XQS6 30S ribosomal protein S1 n=3 Tax=Desulfovibrio R... 44 0.018 UniRef50_C8WX93 RNA binding S1 domain protein n=2 Tax=Alicycloba... 43 0.019 >UniRef50_D0KHM4 NusA antitermination factor n=18 Tax=Proteobacteria RepID=D0KHM4_PECWW Length = 509 Score = 566 bits (1459), Expect = e-160, Method: Composition-based stats. Identities = 430/507 (84%), Positives = 464/507 (91%), Gaps = 13/507 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKEILAVVEAVSNEK+LPREKIFEALE+ALATATKKKYEQEIDVRV IDRK+GDFDTFR Sbjct: 1 MNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFR 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 RWLVV+EVT PT+EITL+AA++ED SL++G YVEDQIESVTFDRITTQTAKQVIVQKVRE Sbjct: 61 RWLVVNEVTLPTREITLDAAQFEDPSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDL------GNNAEAVILREDMLPRENFR 174 AERAMVVDQFRE EGEIITGVVKKVNRDNISL++ AEAVI REDMLPRENFR Sbjct: 121 AERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTGAEAVIGREDMLPRENFR 180 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 PGDR+RGVLYSVRPEARGAQLFV+RS+PEML+ELFRIEVPEIGEE+IEIKAAARDPGSRA Sbjct: 181 PGDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRA 240 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KIAVKTNDKRIDPVGACVGMRGARVQAVS+ELGGERIDI+LWDDNPAQFVINAMAPADV Sbjct: 241 KIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVV 300 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSG-------WELNVMTVDDLQAK 347 SIVVDED TMDIAVE+ NLAQAIGRNGQNVRLASQL WELNVMTV+DLQAK Sbjct: 301 SIVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAK 360 Query: 348 HQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALR 407 HQAEAHAAID FTK+LDIDE+FATVLVEEGFS+LEELAYVP+KELL IEGLDE TVEALR Sbjct: 361 HQAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALR 420 Query: 408 ERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDL 467 ERAK AL T+A A EESLGD +PA+DLL+L G+ R+LAFKLAA GVCTLEDLAEQG+DDL Sbjct: 421 ERAKAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDL 480 Query: 468 ADIEGLTDEKAGALIMAARNICWFGDE 494 DIE L DE+AG LIMAARNICWFGD+ Sbjct: 481 TDIEELNDEQAGELIMAARNICWFGDD 507 >UniRef50_Q1LSK7 Transcription termination factor NusA n=7 Tax=Gammaproteobacteria RepID=Q1LSK7_BAUCH Length = 495 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 370/494 (74%), Positives = 438/494 (88%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKEILAVVEAVSNEK++PREKIFEALE+ALATATKKKYEQEI+VR+ IDRKSGDF+T R Sbjct: 1 MNKEILAVVEAVSNEKSVPREKIFEALETALATATKKKYEQEIEVRINIDRKSGDFETLR 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 RWL+V++VTQPT+EITLEAA++++ + +G Y+ED IESVTFDRITTQTAKQVIVQKVR Sbjct: 61 RWLIVEKVTQPTREITLEAAKFDNPNAQVGGYIEDIIESVTFDRITTQTAKQVIVQKVRA 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AERAM+++QFR+++G+I+ G+VKKV+RDN+S+D+GNNAEA+I REDMLPRENFR GDR+R Sbjct: 121 AERAMIIEQFRKYKGQILIGLVKKVHRDNMSIDIGNNAEAIINREDMLPRENFRIGDRIR 180 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 GVLYS+RPE RG QLFV+R+ PEML+ELFRIEVPEIGEE+IEIKA ARDPGSRAKIAVKT Sbjct: 181 GVLYSIRPEVRGTQLFVSRTCPEMLVELFRIEVPEIGEELIEIKAVARDPGSRAKIAVKT 240 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 NDKRIDPVGACVGMRGARVQAVS+ELGGERIDIVLWDDNP QFVINAMAPADVASI+VDE Sbjct: 241 NDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPVQFVINAMAPADVASIIVDE 300 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 D MDIAVE NLAQAIGRNGQNVRLASQLSGWELNV+T+ ++Q KH+AE AAI+ FT Sbjct: 301 DTQIMDIAVEESNLAQAIGRNGQNVRLASQLSGWELNVITLSEMQEKHRAETSAAIEIFT 360 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420 K L+I+E+ AT+L+E G S+LEELAYVP+KELL I+ LDE VE LR++AK A+ + Sbjct: 361 KTLNINEELATILIEGGISSLEELAYVPIKELLVIDKLDENIVEELRKKAKQAITQLTIT 420 Query: 421 QEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGA 480 +E+ KP DLL L ++R +AFKLAARG+CTLE+LAEQGIDDL +IEGL+ E+AG Sbjct: 421 MQENNLAKKPDQDLLELSKLERHIAFKLAARGICTLENLAEQGIDDLLNIEGLSSEQAGE 480 Query: 481 LIMAARNICWFGDE 494 LIMAAR ICWFGD+ Sbjct: 481 LIMAARKICWFGDQ 494 >UniRef50_A0LE21 NusA antitermination factor n=14 Tax=Bacteria RepID=A0LE21_MAGSM Length = 506 Score = 553 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 222/503 (44%), Positives = 318/503 (63%), Gaps = 10/503 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M EIL V + V+ EK + R+ + EA+ESA+ TA++KKY +++ + D KSG+F + Sbjct: 1 MTVEILQVADQVAREKGIDRKVVIEAMESAIQTASRKKYGANKNIQARFDPKSGEFQLNQ 60 Query: 61 RWLVVDEVTQPTK------EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 VVD I+LE A + GD++ +Q+ + F RI QTAKQVI Sbjct: 61 LREVVDLDQDEDLDFDEDIHISLEKALTMNPEAVPGDFIAEQLPPMEFGRIAAQTAKQVI 120 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 174 VQKVR+AER + +++ + +GE++ G+VK+V R+NI +DLG + E+ LPRE++R Sbjct: 121 VQKVRDAERERIFEEYADRQGEMVNGLVKRVERNNIHVDLGR-TSGFLPHEEQLPREHYR 179 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 PGDR+R + VR RG Q+ ++R+ P+M++ LF +EVPEI + ++EIKA ARDPG R+ Sbjct: 180 PGDRIRAFIKEVREVTRGPQIILSRTHPQMVVRLFEMEVPEIYDGIVEIKAVARDPGHRS 239 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KIAV++ND +DPVGACVGMRG+RVQ+V TEL GERIDI+ W +PA FV NA+APA+V Sbjct: 240 KIAVRSNDAHVDPVGACVGMRGSRVQSVVTELQGERIDIIEWSHDPAVFVCNALAPAEVV 299 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 354 +VVDE+ + + V+ L+ AIGR GQNVRLAS+L+GW ++++T + + + Sbjct: 300 KVVVDEEDRNIKVVVDETALSLAIGRRGQNVRLASELTGWRIDIITEQEERNLREEMFGE 359 Query: 355 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 TF K LD+ E+ A VLV EGF++ EE+AYVP+ EL IEG DE + LR RA++ L Sbjct: 360 LQQTFMKDLDLGEEVAAVLVNEGFTSAEEVAYVPLNELTSIEGFDEEIAQELRNRARDTL 419 Query: 415 ATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADI--EG 472 A EE + + L L + D LA + V TL+DLA+ D+L ++ Sbjct: 420 LQQALQTEERKAELHIDERLAQLGLLTDDALIALAEKNVNTLDDLADLATDELVEMFDGE 479 Query: 473 LTDEKAGALIMAARN-ICWFGDE 494 LT E A LI+ AR WF DE Sbjct: 480 LTTEDAETLILGARRAAGWFDDE 502 >UniRef50_Q3J9B5 NusA antitermination factor n=3 Tax=Gammaproteobacteria RepID=Q3J9B5_NITOC Length = 506 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 284/497 (57%), Positives = 378/497 (76%), Gaps = 4/497 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKEIL VV+AVSNEK + +E IF+A+E+ALA AT+K+Y+++I V+V IDR +GD+ +FR Sbjct: 1 MNKEILMVVDAVSNEKGVNKEVIFQAIEAALAMATRKRYQEDIAVQVVIDRTTGDYQSFR 60 Query: 61 RWLVVD---EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 W V++ E+ P +++ L A D + + +V++ +ES+ F RI QTAKQVIVQK Sbjct: 61 SWEVIEDEAELDAPERQMHLSEACKRDPNAEVSGFVKEPMESIAFGRIAAQTAKQVIVQK 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 VREAERA VV +R E++ GVVK+++R NI LDLG+NAE ++ +E+M+PRE RPGD Sbjct: 121 VREAERAKVVAAYRGRIKEMVMGVVKRMDRGNIILDLGDNAEGIVPQEEMIPREAVRPGD 180 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 R+RG L VR E RG QL ++R+ PE+LIELF++EVPEI E IE+K AARDPG RAKIA Sbjct: 181 RLRGYLKEVRAEGRGPQLVISRTAPELLIELFKLEVPEINENRIEVKGAARDPGLRAKIA 240 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 VKTN+ RIDPVGACVGMRG+RVQAVS EL GER+DIVLWD++PA+FVINAMAPA+VASIV Sbjct: 241 VKTNETRIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPARFVINAMAPAEVASIV 300 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357 VDE++H+MD+AV GNL+QAIGR GQN+RLASQL+GWELNVMT + + K ++EA + Sbjct: 301 VDEERHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQ 360 Query: 358 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATI 417 F + LD+DE+ A +LV EGFS++EE+AYVP +E+L IE D V+ LR RA++ L T Sbjct: 361 MFMEQLDVDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTR 420 Query: 418 AQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEK 477 A A EE++ + +LL++E +D LA LA++G+ T E+LAEQ +D+L +IEG+ EK Sbjct: 421 AIANEETIETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELMEIEGMNREK 480 Query: 478 AGALIMAARNICWFGDE 494 A LIMAAR WF E Sbjct: 481 AARLIMAARE-SWFVSE 496 Score = 43.3 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 5/137 (3%) Query: 292 DVASIVVDEDKHTMD--IAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQ 349 +VA+I+V E +++ V + AI + ++ +L +V+ + + Sbjct: 371 EVAAILVHEGFSSIEEMAYVPEQEI-LAI--EEFDSQIVQELRNRARDVLLTRAIANEET 427 Query: 350 AEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRER 409 E +ID A+ L +G T E LA + EL+EIEG++ L Sbjct: 428 IETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELMEIEGMNREKAARLIMA 487 Query: 410 AKNALATIAQAQEESLG 426 A+ + + EE+ Sbjct: 488 ARESWFVSEKQDEETEE 504 >UniRef50_Q83BS0 Transcription elongation protein nusA n=504 Tax=root RepID=NUSA_COXBU Length = 503 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 291/500 (58%), Positives = 375/500 (75%), Gaps = 8/500 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEI-DVRVQIDRKSGDFDTF 59 MNK+IL +V+++SNE+ + +E IFEA+E+ALA T K+YE++ +RV ID+K+GD+++F Sbjct: 1 MNKDILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESF 60 Query: 60 RRWLVVDEVTQ----PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 R W VV++ + P +E+TL+ AR D L +GD +E+ +ESV F RI Q AKQVIV Sbjct: 61 RCWTVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAVQQAKQVIV 120 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRP 175 QKVREAERA ++ Q+ + GE++ GVVK+V R++I LD+G NAEA++LRE+M+PRE FR Sbjct: 121 QKVREAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRI 180 Query: 176 GDRVRGVLYSV-RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 DR+R LYSV + + RG QL V+R++PE L+ELF+IEVPEIGEEVIEIK AARDPGSRA Sbjct: 181 NDRLRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRA 240 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KIAVKTND RIDP+GACVGMRG+RVQAVS ELGGERIDIVLWDDNPAQ VINAMAPA+VA Sbjct: 241 KIAVKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVA 300 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 354 SIVVDED HTMDIAV L+QAIGR+GQNVRLAS+L+GW LNVM+ ++ KH+ EA Sbjct: 301 SIVVDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEAGK 360 Query: 355 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 F + LD+DE+ A LV+ GF LEE+AYVP +EL +EG DE L+ RA + L Sbjct: 361 IKTAFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVL 420 Query: 415 ATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLT 474 T A++E L + KPA+DLL L G+ +LA +L V T +DLAE+ + DL +I + Sbjct: 421 LTQEIAKQE-LDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDLKEIIEID 479 Query: 475 DEKAGALIMAARNICWFGDE 494 DE A LIMAAR WF +E Sbjct: 480 DEAAANLIMAAR-AHWFAEE 498 >UniRef50_Q0C5Z7 Transcription termination factor NusA n=110 Tax=cellular organisms RepID=Q0C5Z7_HYPNA Length = 592 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 213/513 (41%), Positives = 312/513 (60%), Gaps = 22/513 (4%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 EIL + +AV+ EK++ + + EA++ A+ A K KY QE D+R +ID +G+ +R Sbjct: 12 EILQIAKAVAEEKSIDQRIVIEAMQEAIEKAAKAKYGQEHDIRAKIDPATGEQTLWRIQT 71 Query: 64 VVDEV--TQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VVD+ K++ L A+ D +L G +++++ F R+ QTAKQVI QKVR+A Sbjct: 72 VVDDETFEDEAKQLRLSEAKRIDATLVAGSELKEELPPFDFGRVAAQTAKQVITQKVRDA 131 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER +++++ GEI++G+VK+V ++ +DLG AE +I R D +PRENF+P DRVR Sbjct: 132 ERERQYNEYKDRVGEIVSGIVKRVEYGHVIVDLGR-AEGIIRRNDGIPRENFQPNDRVRA 190 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 LY V E +G Q+F++R+ P+ + +LF EVPE+ E VI+IKA ARDPGSRAKI V +N Sbjct: 191 YLYKVSREVKGPQIFLSRAAPDFMRKLFAQEVPEVYEGVIQIKACARDPGSRAKIGVISN 250 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D IDPVGACVGMRGARVQAV EL GE+IDI+ W + A F++N + PA+V+ +V+DED Sbjct: 251 DSSIDPVGACVGMRGARVQAVVGELSGEKIDIIPWSFDAATFIVNGLQPAEVSKVVLDED 310 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 + +++ V AIGR GQNVRLASQL+GW+++++T ++Q E D F K Sbjct: 311 ERRVEVVVADDQFPLAIGRRGQNVRLASQLTGWQIDLITESADSERYQKEFQERTDLFMK 370 Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 LD DE A +L EGF ++EE+A+V ++ + IEG D+ E L+ERA+ L +A Sbjct: 371 ALDADETLAQLLASEGFESVEEIAFVAPEDFITIEGFDKDVAEELQERAREYLDRVATEN 430 Query: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDD--------------- 466 + + AD+++ LEGV A KL +GV T+ED+A DD Sbjct: 431 DAKRRELGVADEVMELEGVTPSFAVKLGEQGVKTVEDVAGLVPDDITGYREPGPDGKPVW 490 Query: 467 ---LADIEGLTDEKAGALIMAAR-NICWFGDEA 495 + + + A +M AR W EA Sbjct: 491 VEGILKKGEMRKDDANLFVMKARVAAGWIEPEA 523 >UniRef50_A4G7S8 Transcription elongation protein nusA (N utilization substance protein A) (L factor) n=52 Tax=Proteobacteria RepID=A4G7S8_HERAR Length = 519 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 237/485 (48%), Positives = 339/485 (69%), Gaps = 6/485 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M++EIL +V+A++ EK + + +F ALE ALA ATKK+YE ++D+RV IDR +G+F++FR Sbjct: 1 MSREILQLVDALAREKNVDPDIVFGALEHALAQATKKRYEGDVDIRVSIDRDTGEFESFR 60 Query: 61 RWLVVDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 RW VV + + P +EI A+ + + + D++E+ IESV F R Q KQV++Q+ Sbjct: 61 RWHVVPDDAGLQLPDQEILHFEAKEQIGDIEVDDHIEEPIESVEFGRRFAQDTKQVVLQR 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 +R+AER ++ F E ++TG +K++ R + ++ G EA + R+ +P+EN R GD Sbjct: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGR-IEARLPRDQTIPKENLRIGD 179 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 RVR + + ARG Q+ ++R+ PE +++LF +EVPEI + ++EIK+AARD G RAKIA Sbjct: 180 RVRAYILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIA 239 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V T+DKRIDP+G CVGMRG+RVQAV+ ELGGER+DIVLW ++PAQFVI A+APA+V+SIV Sbjct: 240 VFTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIV 299 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357 VDE+KH MD+ V+ NLA AIGR GQNVRLAS+L+GW++N+MT ++ K Q E A Sbjct: 300 VDEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAATRI 359 Query: 358 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATI 417 F + LD+D++ A +LV+EGF++LEE+AYVP+ E+L+IE DE TV LR RA++AL T Sbjct: 360 LFMEKLDVDQEVADILVDEGFASLEEIAYVPIGEMLDIESFDEDTVNELRNRARDALVTE 419 Query: 418 AQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEK 477 A A EE + + L NLEG+DR +A KL GV TL+ A D+ I L ++ Sbjct: 420 AIASEEGME--GMDEALANLEGMDRIVAGKLGLAGVKTLDAFAGLAYDEFGAILALPTDR 477 Query: 478 AGALI 482 A LI Sbjct: 478 ARHLI 482 >UniRef50_Q1V1E6 Transcription termination factor n=3 Tax=Candidatus Pelagibacter RepID=Q1V1E6_PELUB Length = 530 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 206/507 (40%), Positives = 314/507 (61%), Gaps = 21/507 (4%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+L + EAV+ EK++ +E I +++E+ +A A K K+ Q+ +++V IDR+SGD FR+ + Sbjct: 23 ELLRIAEAVALEKSIDKELIIDSMETGIAKAAKSKFGQDNEIKVLIDRESGDIGIFRKLI 82 Query: 64 VVDEVTQPTKEITLEAAR---YEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV++ EI L+ A ++ +GD + + S F RI QTAKQVI VRE Sbjct: 83 VVEKPENTNTEINLQDAIILNEVNKDKKIGDEILQPLPSFDFGRIAAQTAKQVISFNVRE 142 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER + F + + I++G+VK++ N+ +DLG EA+I + +M+PREN + GDRV+ Sbjct: 143 AERERQYNDFIDKKDSILSGIVKRLEFGNVIVDLGR-TEAIIQKNEMIPRENIKAGDRVK 201 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 Y V+ EARG Q+F++R+ P+ + +LF EVPEI + +IEIK++ARDPGSRAKI VK Sbjct: 202 AYCYDVKREARGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSARDPGSRAKICVKA 261 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D +DPVGACVGMRG+RVQAV EL GE+IDIV W ++PA V NA++PA+V + VD Sbjct: 262 VDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAIVVSNALSPAEVQRVNVDS 321 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 +D+ + NL++AIGR GQNVRLA++L +E+N+MT + + Q+E + F Sbjct: 322 VAKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQSEFKEKTENFV 381 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420 K L++DE +LV EGFS++ ++ + L++IEG++E T +AL ERAK + Sbjct: 382 KNLELDETLGQLLVAEGFSSISDIKDSSPENLMKIEGIEEDTAKALIERAKEFYQKDQED 441 Query: 421 QEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDL-----------AD 469 + + D DDL+N +G+ + L + + LED A+ D+L Sbjct: 442 ITQRIKDLGLQDDLINHKGLTPGMLVTLGEQKILKLEDFADLASDELTGGYDVVKGERIK 501 Query: 470 IEG------LTDEKAGALIMAARNICW 490 I+G L+ +A LIM+AR+I + Sbjct: 502 IQGYLEDFALSKTEADELIMSARSIIY 528 >UniRef50_Q28WF5 NusA antitermination factor n=74 Tax=Bacteria RepID=Q28WF5_JANSC Length = 590 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 217/553 (39%), Positives = 306/553 (55%), Gaps = 71/553 (12%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+L EAV+ EK + + EA+E +LA A K +Y E+D+RV IDRK+G R Sbjct: 10 ELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGSELDIRVSIDRKTGRATFTRVRT 69 Query: 64 VVDE--VTQPTKEITLEAARYE------------------DESLN--------------- 88 V DE + E+ L A DE Sbjct: 70 VADEDTLENDKAEMLLADADATVAAERPNVVVFNAKSHVYDEEGEVVETRDVRRFVMRKP 129 Query: 89 ------------------LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 +GD + D++ V RI Q+AKQVI+QKVREAER +F Sbjct: 130 TENDKLLTEGVDQSTGPVIGDMIADEVPPVEMGRIAAQSAKQVILQKVREAERDRQFAEF 189 Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEA 190 ++ GEII GVVK+ N+ +D+G+ EA + R + + RE +R GDR+R + VR E Sbjct: 190 KDRVGEIINGVVKREEYGNVIVDVGSG-EAQLRRNEKIGREAYRNGDRIRCYIKDVRREN 248 Query: 191 RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGA 250 RG Q+F++R+ PE + ELF++EVPEI + +IEIKA ARDPGSRAKIAV + D IDPVGA Sbjct: 249 RGHQIFLSRTAPEFMRELFKMEVPEIYDGIIEIKAVARDPGSRAKIAVISYDNGIDPVGA 308 Query: 251 CVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVE 310 CVGMRG+RVQAV EL GE+IDI+ W+++ F++NA+ PA+V+ +V+DED +++ V Sbjct: 309 CVGMRGSRVQAVVNELQGEKIDIIPWNEDAPTFLVNALQPAEVSKVVLDEDAGKIEVVVP 368 Query: 311 AGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFA 370 L+ AIGR GQNVRLASQL+ +++++T ++ + QAE F LD+DE FA Sbjct: 369 DEQLSLAIGRRGQNVRLASQLTNLDIDILTEEEESKRRQAEFEERTKLFMDTLDLDEFFA 428 Query: 371 TVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKP 430 +LV EGF+ LEE+AYV ELL I+G+DE T E L+ RA++ L + E + Sbjct: 429 QLLVSEGFTALEEVAYVEADELLVIDGVDEGTAEELQARARDYLEAQNKLALEKAKEMGV 488 Query: 431 ADDLLNLEGVDRDLAFKLAARGVCTLEDLA-----EQG------------IDDLADIEGL 473 + L+ EG+ + L GV TLED A E D L + + Sbjct: 489 EESLIAFEGLTPQMLVALGEDGVKTLEDFATCADWELAGGWTTEGGERIKDDGLLEPFEV 548 Query: 474 TDEKAGALIMAAR 486 + E+A ++M AR Sbjct: 549 SLEEAQNMVMTAR 561 >UniRef50_B8FCY4 NusA antitermination factor n=3 Tax=Desulfobacterales RepID=B8FCY4_DESAA Length = 488 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 169/431 (39%), Positives = 273/431 (63%), Gaps = 5/431 (1%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 +I V++ VS +K + + + LE AL A +KK D+ VQ + ++G+ + F+ Sbjct: 4 SDIGRVIDQVSRDKGIDKNVLIATLEEALQAAARKKLGPRADIEVQYNEEAGELEVFQFR 63 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 VV+EVT+P E+++E R D LGD + ++++ TF RI Q+AKQVI+QK+++AE Sbjct: 64 EVVEEVTEPDLEMSMEDGRELDPDCELGDSLGSKMDTATFGRIAAQSAKQVIIQKLKDAE 123 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 R V F + +GEII G++++++R +I ++LG E V+ + +PRE + GDR+R Sbjct: 124 RDAVYSSFMDRKGEIINGIMQRMDRGDIIVNLGQ-TEGVLPSREQVPRETYHRGDRIRAF 182 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND 242 + V E RG Q+ ++R+ P L LF++EVPEIGE V+ + A AR+PG RAKIAV ++D Sbjct: 183 ILDVVLEGRGPQIILSRTHPNFLTSLFKMEVPEIGEGVVSVMAGAREPGVRAKIAVASSD 242 Query: 243 KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK 302 ID VGACVGM+G+RVQ V EL GE+IDIV W + A+FV NA+APA ++ +++DE+ Sbjct: 243 SDIDAVGACVGMKGSRVQNVVHELRGEKIDIVPWHADSAKFVCNALAPAQISRVIIDEEN 302 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKY 362 H M++ V L+ AIG+ GQNVRLAS+L+GW L+V + + ++ ++ + Sbjct: 303 HAMEVIVPDEFLSVAIGKKGQNVRLASKLTGWHLDVKS----ETRYSRTMQDGYNSLMEL 358 Query: 363 LDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQE 422 ++DE+ A L E+GF ++EEL+ +L++I+G+D + L A+ A+A++A ++ Sbjct: 359 AELDENIADALYEKGFYSVEELSAADPDDLVQIKGIDLTLADTLIIAAQEAMASMAMEKQ 418 Query: 423 ESLGDNKPADD 433 S A + Sbjct: 419 ASAPQEAEAAE 429 >UniRef50_C4GHM6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHM6_9NEIS Length = 500 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 226/500 (45%), Positives = 339/500 (67%), Gaps = 9/500 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQE-IDVRVQIDRKSGDFDTF 59 M+KEIL + EA+++EK + E +FEALE AL A KKK ++E +D+ ++IDR++GD+ T Sbjct: 1 MSKEILLLAEALASEKNVSNEIVFEALEVALGIAAKKKADREQMDLEIRIDRETGDYKTI 60 Query: 60 RRWLVVDE--VTQPTKEITLEAARYEDESLNL--GDYVEDQIESVTFDRITTQTAKQVIV 115 R+WL+V++ T P E T+E + E + + GDY E+++ + F R QTAKQ+I+ Sbjct: 61 RKWLIVEDLDYTYPELEKTIEQIQEEQPEIQISVGDYYEEELPNEAFGRQAAQTAKQIIL 120 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRP 175 Q++R+AER +++ F E I+TG VK++ R I ++L +A+I RE MLPREN+R Sbjct: 121 QRIRDAEREQILNHFLETHENIVTGTVKRMERHGIVVELAPKLDALIPREQMLPRENYRG 180 Query: 176 GDRVRGVLYSVRPEARG-AQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 GDR+R + + + G Q+ ++R+ P+ + ELF EVPEI + ++EIK ARDPG RA Sbjct: 181 GDRIRALFWKLEEFNGGRKQVLLSRTAPDFVRELFAQEVPEIADGLLEIKEVARDPGQRA 240 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KIAV D+RIDP G C+G+RG+RV AVS E+GGERID+VLW D+ AQFVINA++PA V+ Sbjct: 241 KIAVLARDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDTAQFVINALSPAQVS 300 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 354 IV+D++ +++D+ V LA AIGR GQNVRLA++L+G +LN+MT+ + + ++ AE+ A Sbjct: 301 RIVIDDELNSVDVIVAEDQLALAIGRGGQNVRLAAELTGLQLNIMTLQEAEERNAAESAA 360 Query: 355 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 A + F + L++ E+ A LV EGF ++EE+AYVP ELLE+EG D E+LR +A+ + Sbjct: 361 ARNLFVEQLEVSEEIADALVNEGFESVEEVAYVPASELLEVEGFDAELAESLRAKAREVV 420 Query: 415 ATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLT 474 A+ E L + +DL L+GVD D+ LA + + +DLAE I +L +I G++ Sbjct: 421 LKAAEEAEAKLNE--IDEDLRTLDGVDEDMLRDLAEANITSRDDLAELSIAELIEITGVS 478 Query: 475 DEKAGALIMAARNICWFGDE 494 E+A I+AAR WF +E Sbjct: 479 HEEAEKAILAAR-AHWFAEE 497 >UniRef50_Q9ZCZ7 Transcription elongation protein nusA n=20 Tax=Alphaproteobacteria RepID=NUSA_RICPR Length = 503 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 183/492 (37%), Positives = 312/492 (63%), Gaps = 7/492 (1%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N EIL ++++V+ EK + +E + +E A+ A +KKY E +++ QI+RK+G+ + R Sbjct: 6 NIEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEINLLRI 65 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 +V++V +I+LE A ++ +GD + + + + R++ Q AKQVI Q+V EA Sbjct: 66 LKIVEDVEDYLTQISLEDALVKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQRVIEA 125 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER F++ +G+II G+VK++ +I +DL + AEA+I ++ ++ E+F+P DR++ Sbjct: 126 EREKQYHDFKDRKGDIINGIVKRIEYGDIIVDL-SRAEAIIKKDQLIKGEHFKPNDRIKA 184 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + VR E +G Q+F++R +ML++LF++EVPEI E++I+IK+ ARDPGS+AKIAV + Sbjct: 185 YVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSVARDPGSKAKIAVFAS 244 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINA---MAPADVASIVV 298 D IDPVG+CVG+RG RV+AV+ EL GE+IDIVLW ++ AQF++N+ +AP+++ I++ Sbjct: 245 DSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNSLIPLAPSEITKILI 304 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 DED H +++ V + + AIGR GQNVRLAS+L+GW +++MT + + E + + Sbjct: 305 DEDSHKVEVVVSQEHQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFSTSTEL 364 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418 F + LD++E +L GF+++E++A + L IEG +E ++ RA + + Sbjct: 365 FMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAIHYVDLKN 424 Query: 419 QAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDD---LADIEGLTD 475 + + L + +L+++ + +L K A G+ T+EDL E +++ LA +TD Sbjct: 425 EKIIKKLEELGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNEFKNLAPNSNITD 484 Query: 476 EKAGALIMAARN 487 E LI AR+ Sbjct: 485 ENIKLLIKTARH 496 >UniRef50_Q1DAM8 Transcription termination factor NusA n=11 Tax=Bacteria RepID=Q1DAM8_MYXXD Length = 566 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 184/533 (34%), Positives = 297/533 (55%), Gaps = 53/533 (9%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDE 67 V++ V+ +K + R + LE A+ TA KK + Q+ ++ + D G + F+ VV+E Sbjct: 15 VLDQVAKDKGIDRAVLIATLEDAMKTAAKKHFGQDRELEAKYDPDKGVVELFQAITVVEE 74 Query: 68 VTQPT---KEITLEAARYEDESLNLGDYVEDQIESVT----------------------- 101 + P +I+L A + + GD + QI Sbjct: 75 IVDPVQAVNQISLVEAHKKGMEVEPGDELVFQIFYRDEDAAEAKAQDDQYGDILRLKTFR 134 Query: 102 --FDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAE 159 F RI QTAKQVI+Q+ R+AER V +++R+ + EI+TG+ ++ R NI +DLG AE Sbjct: 135 RGFGRIAAQTAKQVILQRTRDAERENVFNEYRDRKNEIVTGIARRFERGNIIVDLGR-AE 193 Query: 160 AVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEE 219 AV+ + +PRE +RPGDRV+ + V E++G Q+ ++R+ +L +LF +EVPEI E Sbjct: 194 AVLPVREQVPRETYRPGDRVQAYVLDVLRESKGPQIVLSRASVNLLTKLFEMEVPEIAEG 253 Query: 220 VIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDN 279 ++ I+AAAR+PG RAKIAV + D +DPVGACVGM+G+RVQAV EL GE+IDIV +D++ Sbjct: 254 IVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDIVPFDED 313 Query: 280 PAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 PA+FV +A+APA+V+ +++DE H M++ V L+ AIGR GQNVRLA+QL+GW+L++ Sbjct: 314 PARFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTGWKLDIN 373 Query: 340 TVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLD 399 + ++ A + ++E L GF ++A + L ++ G+D Sbjct: 374 SESRVRELR----EFANRSLGSLPGVNEMLVETLYAHGFRQARDIAEANAELLAQLPGID 429 Query: 400 EPTVEALRERAKNAL----------------ATIAQAQEESLGDNKPADDLLNLEGVDRD 443 + +++E A+ + A IA+A+ ++P + + + GV Sbjct: 430 PARIPSMQEAARTRMVEDQAELSRMDYEREQARIAEARRHPDELSQP-ERMARVRGVGEK 488 Query: 444 LAFKLAARGVCTLEDLA-EQGIDDLADIEGLTDEKAGALIMAARNICWFGDEA 495 +L G ++ED+A E+ + L D+ G+ +KA L AA N + +EA Sbjct: 489 TIEQLILAGYRSVEDIANEKDLAKLGDVPGVGIKKARQLKSAAEN--YLVEEA 539 >UniRef50_A5EWZ0 Transcription termination factor n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWZ0_DICNV Length = 495 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 242/497 (48%), Positives = 321/497 (64%), Gaps = 9/497 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYE-QEIDVRVQIDRKSGDFDTF 59 M+KE+LA+VEAV+NEK + R IFEALE+ALA AT+K++ +EI+ RV IDRKSG+++TF Sbjct: 1 MSKELLAIVEAVANEKDVDRNVIFEALEAALAAATRKRHGDKEIETRVSIDRKSGEYETF 60 Query: 60 RRWLVVDE---VTQPTKEITLEAARYEDESLNL--GDYVEDQIESVTFDRITTQTAKQVI 114 R W +VD+ + EI A + +L GD E++IE+ F RI+ Q AKQ+I Sbjct: 61 RVWKIVDDDAILENTDIEIRETVAHIDFPDADLVAGDIYEEKIENEPFGRISAQMAKQII 120 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 174 +QK+REAER + QF E EG ++ G+V++ R N +DLG E ILR DM+PRE R Sbjct: 121 IQKLREAEREKIYQQFIEQEGTLVHGIVRRHERGNAIVDLG-GVEGTILRNDMIPREPLR 179 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 GDR+ G L V E RG QL ++R PE+LI+LF+ EVPEI +IEI AARDPG RA Sbjct: 180 SGDRILGYLEKVNRELRGPQLQISRIAPELLIQLFQKEVPEISSGMIEIMGAARDPGLRA 239 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KI+V+T D RIDPVGACVG+RG+RVQ V EL GERIDIVLWDD+ +V AMAPA ++ Sbjct: 240 KISVRTFDPRIDPVGACVGIRGSRVQGVVNELAGERIDIVLWDDDAETYVRKAMAPAVIS 299 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 354 V+E T+DIAV L QA+GR GQNVRLAS+L+GW +NV++ + K QA A Sbjct: 300 DTCVNEATKTIDIAVPEEKLPQAVGRGGQNVRLASELTGWTINVLSESEFAEKIQATQSA 359 Query: 355 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 + + LD+DE AT L+ G +T E +AY ELL I+ D V+ L ERA N + Sbjct: 360 QEQSLSTILDVDETVATQLIAHGITTPEAVAYTGRDELLTIDAFDAELVDDLLERAANYV 419 Query: 415 ATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLT 474 + +EE + + + +EGVD LA KL A G+ T EDLAE +++L I T Sbjct: 420 -MVEAFKEEDTPEEEMQTSVSVMEGVDSVLAAKLQAAGIHTQEDLAELSVEELITIGNTT 478 Query: 475 DEKAGALIMAARNICWF 491 +A ALI+ AR WF Sbjct: 479 QNEAAALILKARE-PWF 494 >UniRef50_A8ZZ66 NusA antitermination factor n=3 Tax=Deltaproteobacteria RepID=A8ZZ66_DESOH Length = 475 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 175/431 (40%), Positives = 269/431 (62%), Gaps = 8/431 (1%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 +++ VVE VS +K + R+ + +ALE A+ +A +K+Y ID+ D +G+ + F+ Sbjct: 4 QDVKRVVEQVSRDKGIDRDTLVKALEEAIKSAARKRYGAAIDIETMYDEDTGEIEIFQFK 63 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 VV+ V P +IT R D LGD + ++++ +F RI Q+AKQVI+QK+REAE Sbjct: 64 EVVETVQDPDLQITFVEGRALDPECELGDSLGVKMDTQSFGRIAAQSAKQVIIQKMREAE 123 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 R+ V F E EGEII G+V ++ R N+ +++G AEA++ + +P E +R GDRVR Sbjct: 124 RSAVYKNFVEKEGEIINGIVSRMERGNVIVNIGE-AEAILNSREQIPGEGYRRGDRVRAN 182 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND 242 + V E G Q+ ++R+ P+ ++ LF+ EVPEI E +I IKA AR+ G R KIAV +ND Sbjct: 183 VMKVLEETAGPQIILSRAHPDFVVNLFKTEVPEISEGIITIKAIAREAGGRTKIAVVSND 242 Query: 243 KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK 302 IDPVGACVG+RG R+Q V EL GE+IDIV W+ +PA+FV NA++PA++A +++DED Sbjct: 243 MDIDPVGACVGVRGNRIQNVVKELKGEKIDIVPWNPDPAKFVCNALSPAEIARVIIDEDN 302 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKY 362 M+I V + + AIGR GQNVRLAS+L+GW L+V + ++ + DT + Sbjct: 303 AAMEIIVPDESHSLAIGRRGQNVRLASKLTGWHLDVQS----ESIYTQAMERGYDTLLQI 358 Query: 363 LDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQE 422 +D A L E GF + ++++ + +L+E+EG+DE + +AL ++A+ QA Sbjct: 359 PGVDGSLANALCEVGFFSADDISGAAVDDLIELEGIDEASAKALI---RDAVKVAEQAAR 415 Query: 423 ESLGDNKPADD 433 E K A + Sbjct: 416 EQAIREKAAKE 426 Score = 41.3 bits (96), Expect = 0.077, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 31/54 (57%) Query: 432 DDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAA 485 D LL + GVD LA L G + +D++ +DDL ++EG+ + A ALI A Sbjct: 353 DTLLQIPGVDGSLANALCEVGFFSADDISGAAVDDLIELEGIDEASAKALIRDA 406 >UniRef50_Q1MQY9 Transcription elongation factor n=2 Tax=Desulfovibrionaceae RepID=Q1MQY9_LAWIP Length = 440 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 153/443 (34%), Positives = 270/443 (60%), Gaps = 18/443 (4%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E+ ++ +S +K L R+ + + LE A+ T+ ++Y +DV V + +G+ + ++ Sbjct: 1 MNLELKKALDQISKDKGLDRDMLVDTLEDAVRTSVIRRYGDNLDVEVSYNDDTGEIEVYQ 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +VV+EVT P ++++ A+ D S L D + +++ RI Q+AKQVI+Q++R+ Sbjct: 61 FKIVVEEVTDPITQLSITEAKTHDPSAQLDDEMGFRLKVEDLGRIAAQSAKQVIIQRMRD 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ ++ +++++ GEI++G+V++ ++ ++LG EA++ +++ +P+E+++ GDRV+ Sbjct: 121 AEQEIIYEEYKDRIGEIVSGIVQRRDKGGWIINLGR-TEALLPKDEQIPKEHYKRGDRVQ 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 G++ VR E RG Q+ ++R+ + + LFR EVPE+ + ++I ARDPGSRAK+ V + Sbjct: 180 GLIIDVRKEGRGPQVIISRAHRDYMAALFRREVPEVDDGTVQIMGVARDPGSRAKVTVLS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ++ +DPVGACVG+RG+R+Q + EL GERIDIV+W + NA+APA ++ I VDE Sbjct: 240 RERDVDPVGACVGVRGSRIQNIVQELHGERIDIVIWSPEITTYARNALAPAIISRITVDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 ++ +++ V L AIGR GQNV+LA++L GW++++ T E++A Sbjct: 300 TENLLEVTVPDDQLTSAIGRKGQNVKLAAKLLGWKIDIFT-----ETRYNESNAVGRGLE 354 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA-- 418 + + E L+ G +TLE++ +EL+E G+ E V LR A N L+T A Sbjct: 355 QVASVAEISIETLLHSGLNTLEQINETSDEELIEKLGISESQVNDLR-AAVNFLSTTATV 413 Query: 419 ---------QAQEESLGDNKPAD 432 +A++ +N PAD Sbjct: 414 DSNKKKKEVEAEQAKDNENNPAD 436 >UniRef50_D1U699 NusA antitermination factor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U699_9DELT Length = 466 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 143/405 (35%), Positives = 246/405 (60%), Gaps = 6/405 (1%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 E+ ++ +S ++ + R+ + + LE A+ +A +K+ + +D+ V + SG+ + F Sbjct: 2 SELKKAIDQISKDRGIDRDLLIDTLEEAVRSAVARKHGETMDIEVAFNEDSGEIEVFEFK 61 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 +VV EV P EI+LE AR D + L D + + RI Q+AKQVI+Q++R+AE Sbjct: 62 VVVAEVHDPISEISLENAREHDPNAQLDDEMGFPVRIEDLGRIAAQSAKQVIIQRMRDAE 121 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 + ++ +++++ GEI +G+V++ +R ++LG EA++ +++ +PRE ++ GDRV+ Sbjct: 122 QEIIFEEYKDRLGEITSGIVQRRDRTGWIINLGR-TEALLPKDEQIPRERYKRGDRVQAY 180 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND 242 + V E+RG Q+ V+RS P+ +IELF+ EVPE+ + ++I ARDPG RAK+AV + D Sbjct: 181 IIDVLKESRGPQVVVSRSHPDYMIELFKREVPEVADGTVKIMGVARDPGLRAKVAVMSRD 240 Query: 243 KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK 302 + +DPVGACVG+RG+R+Q V E+ GERIDIV+W + A + +A++PA + I VD+++ Sbjct: 241 RDVDPVGACVGIRGSRIQNVVQEMKGERIDIVVWSPDIAMYAQHALSPAVITRITVDDEE 300 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKY 362 +++ L AIGR GQNV+LA++L GW++++ T E +A+ + Sbjct: 301 EALEVVCPDDQLTLAIGRKGQNVKLAAKLLGWKIDIFTES-----RYGELNASRKGMDQV 355 Query: 363 LDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALR 407 + E GF +LE + +ELL I GL + + +R Sbjct: 356 ASVAEIPMESFFNAGFESLESIVRATNEELLAINGLTKSKIGDIR 400 >UniRef50_B6AR17 Transcription termination factor (NusA) n=4 Tax=Bacteria RepID=B6AR17_9BACT Length = 452 Score = 466 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 148/451 (32%), Positives = 252/451 (55%), Gaps = 20/451 (4%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N+E+L+V++ + EK + +E + ALESAL A +K+Y + +V+I+ ++G+ + Sbjct: 3 NQELLSVIDQLHREKGISQETLIVALESALLAAARKRYGGGDNFQVEINPRTGEVQVLQI 62 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 +V++V P++EI+L A D +GD + +E F RI Q AKQV+ QKVREA Sbjct: 63 RRIVEQVESPSEEISLAEALESDPEAEVGDEIGSYLEIDDFGRIAAQAAKQVMFQKVREA 122 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E +V +F +G+I+ GV+ R N +DLG EAV+ + +PRE+FR GDR++ Sbjct: 123 EWDVVTKEFGGRQGDIVNGVIIGHERKNYIVDLGK-TEAVLPLREQMPRESFRRGDRIKA 181 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 +L +R +RG QL ++R+ P+ + LF EVPEI E ++E++ R+PG RAKIAV + Sbjct: 182 LLLDMRTTSRGPQLVLSRTHPDFVSRLFEKEVPEIAEGILEVRNVVREPGERAKIAVYSR 241 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE- 300 D +DPVG+CVG++G RVQAV EL GE++DI+ W +P+ F+ A++PA + + + Sbjct: 242 DPNVDPVGSCVGVKGVRVQAVVRELHGEKVDIIEWSPDPSTFIARALSPAKAVRVSIKDM 301 Query: 301 -DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA-----KHQAEAHA 354 + + V+ L+ AIGR G NVRLA++L+GW++++ + +Q+ + + Sbjct: 302 GTEKVATVVVQDSQLSLAIGRRGHNVRLAAKLTGWKVDIFSETQMQSEAGLDERAERVAS 361 Query: 355 AIDTF------------TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPT 402 +T + + A +L + GF TL+ +A+ ++ + + T Sbjct: 362 LAETLGSQSGDTSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKT 421 Query: 403 VEALRERAKNALATIAQAQEESLGDNKPADD 433 L + A++ L K ++ Sbjct: 422 AAKLIQTAQDFLGESTGETPGLTELPKTDEN 452 >UniRef50_Q6MMS7 N utilization substance protein A n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMS7_BDEBA Length = 462 Score = 466 bits (1200), Expect = e-130, Method: Composition-based stats. Identities = 150/421 (35%), Positives = 251/421 (59%), Gaps = 8/421 (1%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++ V++ V +K + ++ + +A+ + A +KKY ++ + +G+ + F Sbjct: 7 SDLSKVIDQVGKDKGIDKQVVIDAITQGMLVAARKKYGTYREIEAAYNEDTGEVELFEFK 66 Query: 63 LVV--DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV ++ EI L+ A+ D ++ L D + ++E+ RI QTAKQ+I+QKVR+ Sbjct: 67 EVVPREKYIDEEVEIPLDEAQKLDPNVQLDDSIGIKMEASDLGRIAAQTAKQIIMQKVRD 126 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER ++ ++F E +GEI +G+ ++V + I +DLG EA I + +P E ++PGDR++ Sbjct: 127 AERNIIFNEFEERKGEIASGIARRVEKGAIVVDLGR-TEAYIPPREQIPGEQYKPGDRIQ 185 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 G L VR RG Q+ ++R+ L++LF +EVPEI + V+EI AAAR+PG RAKIAV++ Sbjct: 186 GYLSEVRQTTRGPQIIMSRADERYLMKLFEMEVPEIYDGVVEIMAAAREPGQRAKIAVRS 245 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D +DPVGACVGM+G+RVQ + EL GE+IDIV WD++ +F NA+APA+++ + +D+ Sbjct: 246 KDNSVDPVGACVGMKGSRVQNIVQELRGEKIDIVPWDEDITRFACNALAPAEISRVFLDD 305 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 M+I V L+ AIG+ GQNVRLA++L+ W+L++++ ++ +I Sbjct: 306 ANREMEIVVPDSQLSLAIGKRGQNVRLAAKLTTWKLDIISESSAASR----TAESIFNLM 361 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGL-DEPTVEALRERAKNALATIAQ 419 + E A + + GF + + +A ++EL+ I G D E L + AK +A Sbjct: 362 LIPGMSETMAQNIFQSGFGSFQAVATAAVEELMTIPGYDDPDKAEKLSKEAKGLVAKYES 421 Query: 420 A 420 Sbjct: 422 E 422 >UniRef50_Q9KA74 Transcription elongation protein nusA n=309 Tax=Bacteria RepID=NUSA_BACHD Length = 382 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 138/371 (37%), Positives = 230/371 (61%), Gaps = 4/371 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E + + + EK + +E I EA+E+AL + K+ + Q +VRV ++R++G F Sbjct: 1 MNSEFMDALTTLEKEKGISKEVIIEAIEAALISGYKRNFNQAQNVRVDVNRENGSIRVFA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 R VV+EV EI+L+ A+ + + + D VE ++ F RI QTAKQV+ Q+VRE Sbjct: 61 RKEVVEEVFDARLEISLDEAKGINPNYEVDDVVEIEVTPKDFGRIAAQTAKQVVTQRVRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER ++ F + E +I+TG+V++ + I +DLG EA++ + +P E++R DR++ Sbjct: 121 AERGIIYADFIDREEDIMTGIVQRQDNRFIYVDLGK-VEALLPLSEQMPNESYRHNDRIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V +G Q+ ++R+ P +L LF +EVPEI + +E+K+ AR+ G R+KI+V Sbjct: 180 AYITKVEKTTKGPQIMISRTHPGLLKRLFELEVPEIYDGTVELKSVAREAGDRSKISVHA 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 + +DPVGACVG +G+RVQ + EL GE+IDIV W ++P ++V NA++P+ V + V+E Sbjct: 240 ENPEVDPVGACVGPKGSRVQTIVNELKGEKIDIVRWSEDPVEYVANALSPSKVVKVNVNE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 ++ T + V L+ AIG+ GQN RLA++L+GW++++ + + Q E AA Sbjct: 300 EEKTTQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAQELGLLEDEAASH--- 356 Query: 361 KYLDIDEDFAT 371 + L +D++ A Sbjct: 357 ETLALDQETAD 367 >UniRef50_C6C0D5 NusA antitermination factor n=7 Tax=Deltaproteobacteria RepID=C6C0D5_DESAD Length = 456 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 146/439 (33%), Positives = 255/439 (58%), Gaps = 6/439 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M E+ ++ +S ++ + R+ + + LE A+ ++ +KY +D+ V + +G+ + ++ Sbjct: 1 MGSELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVARKYGDAMDIEVNFNEDAGEIEVYQ 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V +EV EITLE A+ D ++ + D + +++ RI Q+AKQVI+Q++R+ Sbjct: 61 FKVVAEEVEDEISEITLEEAKEHDPNVQIDDEMGFKLKVEDLGRIAAQSAKQVIIQRMRD 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ ++ D+F+ EI++G++++ +R ++LG EAV+ + + +PRE ++ GDRV+ Sbjct: 121 AEQEIIYDEFKNRMHEIVSGIIQRRDRTGWIINLGR-TEAVLPKGEQIPRERYKRGDRVQ 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V+ E+RG Q+ V+RS P+ + LF+ EVPE+ + ++I ARDPG RAK+AV + Sbjct: 180 AFIIDVQKESRGPQITVSRSHPDYMTALFKREVPEVDDATVKIMGVARDPGLRAKVAVNS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D+ +DPVGACVG+RG+R+Q + EL GERIDIV+W + A + NA++PA + I VDE Sbjct: 240 LDRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWSQDIAMYAQNALSPAVITRIAVDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 ++ T+++ V L AIGR GQNV+LAS+L GW+++V T E +AA Sbjct: 300 EEKTLEVVVPDDQLTVAIGRKGQNVKLASRLLGWKIDVFTES-----RYGEMNAASKGLD 354 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420 + + E + GF T+ ++A + L+ I G+ V ++ A+ Sbjct: 355 QLASVAEIPVDNFLSAGFETVSQVANASEEILMSISGMTPSKVSDMKSAIMLLGIGDAED 414 Query: 421 QEESLGDNKPADDLLNLEG 439 E P + +E Sbjct: 415 AVEETETEAPVEAEAQVEE 433 >UniRef50_B8J1Y6 NusA antitermination factor n=5 Tax=Desulfovibrionales RepID=B8J1Y6_DESDA Length = 449 Score = 461 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 152/426 (35%), Positives = 266/426 (62%), Gaps = 9/426 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E+ ++ +S +K L R + + LE A+ T+ +++ +++DV V + ++GD + ++ Sbjct: 1 MNLELKKAIDQISKDKGLDRNMLIDTLEDAVRTSVLRRFSEDMDVEVSYNDETGDIEVYQ 60 Query: 61 RWLVVDE--VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118 +V+ + V P +I L AR D S+ + D + +++ RI Q+AKQVI+Q++ Sbjct: 61 FKIVMADGDVANPDTQIELAEAREHDPSVQVDDEMGFRVKVEDLGRIAAQSAKQVIIQRM 120 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 R+AE+ ++ +++++ GEI++G+V++ ++ ++LG EA++ RE+ +PRE+++ GDR Sbjct: 121 RDAEQEIIYEEYKDRVGEIVSGIVQRRDKGGWVVNLGR-TEAILPREEQIPREHYKRGDR 179 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 V+ ++ VR E RG Q+ ++R+ + + LFR EVPE+ + V++I ARDPGSRAK+AV Sbjct: 180 VQALIIEVRQEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAV 239 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 + ++ +DPVGACVG+RG+R+Q + EL GERIDIV+W + A + NA+APA V+ IVV Sbjct: 240 LSRERDVDPVGACVGVRGSRIQNIVQELHGERIDIVVWSADIATYARNALAPALVSRIVV 299 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 DE+++ +++ V L AIGR GQNV+LA++L GW++++ T EA+A Sbjct: 300 DEEENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFT-----ETRYNEANAIGHG 354 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418 + + E L+ G+S+L++L +EL + + + LR A N LA + Sbjct: 355 LEQVASVAEVSIEALLGAGYSSLDQLRQATDQELSDKLTISASRIADLRS-AINFLAPVV 413 Query: 419 QAQEES 424 + ES Sbjct: 414 EETPES 419 >UniRef50_C9KKC1 Transcription termination factor NusA n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKC1_9FIRM Length = 378 Score = 459 bits (1182), Expect = e-128, Method: Composition-based stats. Identities = 140/347 (40%), Positives = 224/347 (64%), Gaps = 1/347 (0%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 +E L ++ + EK + E +FEA+E+AL +A K+ + +VRV + R++G + + Sbjct: 12 GQEFLTTLKELGKEKGIDEEVLFEAIEAALISAYKRNFGSAQNVRVTLSRETGHYHVYAI 71 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VV++ EI+L AR +GD +E ++ F RI QTAKQV+VQ++REA Sbjct: 72 KTVVEDPEDEITEISLAQARTIKPDYEVGDVIEIEVTPANFGRIAAQTAKQVVVQRIREA 131 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER ++ ++F EG+I+TG+V++V N+ +DLG EAV+ + +P E + GDR++ Sbjct: 132 ERGIIYEEFMSREGDILTGLVERVENHNVYIDLGK-TEAVLTPAEQIPTETYAHGDRIKA 190 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + V+ +G Q+ V+R+ P +L LF +EVPEI E ++EIK+ AR+PG+R+KIAV + Sbjct: 191 YVVEVKKTNKGPQIVVSRTHPGLLKRLFELEVPEIQEGIVEIKSVAREPGNRSKIAVYSK 250 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D+ +DPVG+CVG RG RVQ++ ELG E+IDIV W DNPA+F+ NA++PA V S+ V+E Sbjct: 251 DENVDPVGSCVGHRGLRVQSIVDELGSEKIDIVKWSDNPAKFIANALSPAKVVSVAVNET 310 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKH 348 + + V L+ AIG+ GQN RLA++L+GW++++ + + Sbjct: 311 EKVSRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAADEE 357 >UniRef50_B9XFC0 NusA antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XFC0_9BACT Length = 425 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 141/401 (35%), Positives = 237/401 (59%), Gaps = 1/401 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN + L V+E EK + R+ + A+E +L +A KK ++R ID KSGD F Sbjct: 1 MNADFLTVLEFWEREKGISRQVLISAVEESLLSAAKKAVGPARELRCIIDPKSGDIKAFA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + +V ++V I+L A+ LG+ VE ++ F RI +Q AKQ ++Q +R Sbjct: 61 KLIVSEKVVSKHDHISLPDAKKIKPDAQLGEEVEVEVTPAGFGRIASQYAKQSLMQHIRR 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ ++ +F++ G+II+GVV++ +R ++S+DLG EA++ + +P E ++ G+R+R Sbjct: 121 AEKQLIFTEFKDRVGDIISGVVRRFDRSDVSVDLGKY-EALLPNRERVPTEEYQIGERIR 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + +V G ++ ++R+ P +I+LF++EV EI + IEIK AR+PG R K+AV T Sbjct: 180 CYVKAVENGPHGPEIILSRADPRFVIKLFQLEVSEINDGTIEIKGIAREPGFRTKLAVYT 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D+++DPVGACVG+RG RV+ + EL E++DI+ W+ N F+ NA+APA + + VDE Sbjct: 240 RDEKVDPVGACVGLRGQRVKNIVRELNNEKVDIIRWEPNIKGFLTNALAPAQLKTFEVDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + I V L+ AIG+ GQN RL+S+L+GW++++ + + + A+ T Sbjct: 300 ANKRVKIVVGEDQLSLAIGKRGQNARLSSKLTGWQVDIEPEVVHRMGFEEKVAEAVKTLA 359 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEP 401 I ++ A LV +G + LE+L + +L I + + Sbjct: 360 AIPGITQEQADTLVHQGLTRLEDLLQADISDLSGIPQIGDQ 400 >UniRef50_Q01W32 NusA antitermination factor n=3 Tax=Bacteria RepID=Q01W32_SOLUE Length = 542 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 141/435 (32%), Positives = 243/435 (55%), Gaps = 7/435 (1%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 I +E +S EK + + + +A++ A+ A +K Y D +D K+G + V Sbjct: 26 IFQSIEILSKEKGIDPQIVLDAVKDAMLIAARKHYRSTEDYVADMDPKTGAIKLYAVKKV 85 Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 V+ V P+ E+TL AR D + +G V + RI+ QTAKQVI QKVREAER Sbjct: 86 VEAVEDPSHEMTLAEARRIDSTAEVGGEVRIPKNTDALGRISAQTAKQVIFQKVREAERE 145 Query: 125 MVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLY 184 V +++ GE++ +K+V + LDLG EA + +++ E + GDRVR ++ Sbjct: 146 TVFNEYSGRTGELVNCTIKRVEGPDYILDLGK-TEAKLPKKEQSRLEGYSVGDRVRCIIK 204 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 244 V ++G + V+R+ PE+++ LF EVPEI + + I+ AR+ G R KIAV++ D+ Sbjct: 205 LVDKSSKGPGVLVSRAAPELVMRLFEQEVPEIYDGTVAIRGCAREAGERTKIAVQSRDRD 264 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKH 303 +D VGACVGM+G RVQ++ EL GE+IDI+ + ++ F +A++PA V+ I V+D + Sbjct: 265 VDSVGACVGMKGMRVQSIIRELRGEKIDIIEYSEDSVVFATHALSPAKVSRITVIDPLEK 324 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID-----T 358 M++ V+ L+ AIG+ GQNVRLA++L GW++++ + ++ + + +++ A + + Sbjct: 325 HMEVIVDDSQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVESQMAALVAPGAPVS 384 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418 + E+ A L+E G +T+E+L + +EL + G+ +VE ++ + Sbjct: 385 VLIDYGMAEEMAVKLLENGVATIEKLGAMTPEELEVLPGIGPESVEGIQTAVVAYYSQFE 444 Query: 419 QAQEESLGDNKPADD 433 E+ + Sbjct: 445 DPASENAVSETAGSE 459 >UniRef50_A0Q8F4 Transcription elongation factor n=17 Tax=Francisella RepID=A0Q8F4_FRATN Length = 489 Score = 456 bits (1174), Expect = e-127, Method: Composition-based stats. Identities = 205/499 (41%), Positives = 332/499 (66%), Gaps = 19/499 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE+L V+E V+NEK + ++ +FEA+E ALA TKK+ ++ +++ V+IDR +GDF R Sbjct: 1 MSKELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADR 60 Query: 61 RWLVV---DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 W +V +++ +KE+ + A+ + ++ GD + + +E + RI AKQ++++K Sbjct: 61 VWHIVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKK 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 ++ ER ++ G+I+ G +K+ + + +DLGNNAE ++ ++D++ RE +R GD Sbjct: 121 IKNFEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGD 180 Query: 178 RVRGVLYSVRPEARGAQ--LFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 ++R + +V + G + ++RS ML LF++EVPE+ EE+I I R+PG R+K Sbjct: 181 KIRACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSK 240 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAP---AD 292 + VK+ND+RIDP GACVG+RG+R+ ++ +EL GE++D++LW+++ Q+ IN+++P AD Sbjct: 241 VTVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAAD 300 Query: 293 VASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 352 + + VDE+ ++MDI V+ +L++AIG+NG NVRLAS L GW++NV++ + + K Sbjct: 301 ILEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQM--- 357 Query: 353 HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 412 + ++ F + LDID DFA VL+EEG TLE+LAY+ ELLEIEG DE V+ L+ERAK Sbjct: 358 -SIVEKFVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKA 416 Query: 413 ALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEG 472 + + A LG KPA DLL+++G+ DLA +LA + T+EDLAE +D+L DI Sbjct: 417 VILSQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDIVD 470 Query: 473 LTDEKAGALIMAARNICWF 491 + +E+A LIM AR WF Sbjct: 471 MDEEQATNLIMQAR-APWF 488 >UniRef50_D1AUG3 Transcription elongation factor n=5 Tax=Anaplasma RepID=D1AUG3_ANACI Length = 524 Score = 453 bits (1165), Expect = e-126, Method: Composition-based stats. Identities = 167/504 (33%), Positives = 285/504 (56%), Gaps = 20/504 (3%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N E++ V V+ +K L E + +A+E AL ++ KY + ++ IDRK+G R+ Sbjct: 18 NLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYG-DCKIKASIDRKTGVISISRQ 76 Query: 62 WLVVDEVTQPTKE--------------ITLEAARYEDESLNLGDYVEDQIESVTFDRITT 107 LVV++ E I + A + + + +GD + + + V D + Sbjct: 77 ALVVNDDMSFDGEQYGIPSGEVNKYKLIKISDAVADGKDVKVGDILLEPLPPVDVDYNSA 136 Query: 108 QTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM 167 + AKQ + Q + ER ++F++ G+++ GVVK+V +N+ +DL N +E + + Sbjct: 137 KVAKQKVAQLILIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDL-NGSEGYLPVYNT 195 Query: 168 LPRENFRPGDRVRGVLYSVR-PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 + E FRP DRV+ + VR E G Q+F++R + LF+ E+PE+ + ++ IKA Sbjct: 196 IRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVSIKAL 255 Query: 227 ARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVIN 286 ARDPGSR+K+AV ++DK +DPVGAC+G RG R+Q + +EL GE+ID+VL+ + A+FV++ Sbjct: 256 ARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDLAKFVVS 315 Query: 287 AMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA 346 A+APA+V +++DED +++ V ++ AIGR GQN+RLAS+L GWE++V+ + Sbjct: 316 AIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDETEST 375 Query: 347 KHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEAL 406 + E + F LD++E +LV EGFST+E+L V + E+ I+G +E L Sbjct: 376 RKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEIAVEL 435 Query: 407 RERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDD 466 ++RA L + E L ++++L L ++ + KL G+ +ED+A D+ Sbjct: 436 KKRAAEYLVRRREEALEILKSMSVSEEVLELPYLEIEDVVKLCEGGIRNVEDIASMCTDE 495 Query: 467 LADI---EGLTDEKAGALIMAARN 487 D L+ E+ ++I+ +R Sbjct: 496 FYDTVPKARLSKEQVDSIILESRR 519 >UniRef50_D2L1U7 NusA antitermination factor n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1U7_9DELT Length = 496 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 142/410 (34%), Positives = 248/410 (60%), Gaps = 8/410 (1%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+ ++ +S ++ + R+ + + LE A+ ++ +KY + +DV V + + G+ + ++ + Sbjct: 3 ELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQFKV 62 Query: 64 VVDEVTQ--PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VV++ P EI L AR D ++ L D + ++ RI Q+AKQVI+Q++R+A Sbjct: 63 VVEDDDVADPAAEICLADARAIDPNVALEDEMGFKLTVEDLGRIAAQSAKQVIIQRMRDA 122 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E+ ++ +++++ +GEII+G++++ +R ++LG EA++ +E+ +PRE ++ GDRV+ Sbjct: 123 EQEIIYEEYKDRKGEIISGIIQRRDRSGWIINLGR-TEALLPKEEQIPRERYKRGDRVQA 181 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + V P RG Q+ V+R+ + + LF EVPE+ + ++I ARDPGSRAK+AV + Sbjct: 182 YIIEVLPSGRGPQIIVSRTHADYMKALFAREVPEVSDGTVKIVGVARDPGSRAKVAVISK 241 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D+ +DPVGACVG+RG+R+Q + EL GERIDIV+W+ A + NA++PA V I VDED Sbjct: 242 DRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIATYAANALSPARVTRISVDED 301 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 +++ V L AIGR GQNV+LA++L GW++++ T + E +A+ + Sbjct: 302 DKALEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIFTESRFR-----EVNASKKFLEQ 356 Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 411 + E ++ GF ++E+LA P + + I G+ LR K Sbjct: 357 LASVAEIPVDNIISAGFESMEQLADAPDEAIDAISGMTPSKRNDLRAALK 406 >UniRef50_A6TRL0 NusA antitermination factor n=5 Tax=Firmicutes RepID=A6TRL0_ALKMQ Length = 346 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 131/347 (37%), Positives = 222/347 (63%), Gaps = 1/347 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+ E + +E + +K + R+ +F+ALE+AL ++ K+ + ++VRV++ R +GD + Sbjct: 1 MSLEFIEALEQIEKDKGISRDVLFDALEAALISSYKRNFGSAVNVRVEMLRDTGDVHVYS 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + VV+ V EI ++ A+ D + L D VE Q+ F RI QTAKQV+VQ++RE Sbjct: 61 QKKVVEVVEDDLLEINIDEAKEIDPNYALDDIVEKQVTPRNFGRIAAQTAKQVVVQRIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER +V ++F E EIITG V +V + N+ ++LG EA++ + +P E + DR++ Sbjct: 121 AERGIVYEEFINRESEIITGTVSRVAKGNVYINLGK-TEAILGPNEQIPNEVYNHADRIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V+ +G Q+ V+R+ P ++ LF +EVPEI + V+E+K+ +R+ GSR KIAV + Sbjct: 180 TYIVEVKNTTKGPQIHVSRTHPGLVKRLFELEVPEIHDGVVEVKSISREAGSRTKIAVFS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D+ +DPVGACVG +G+RVQ + EL GE+IDI+ + + P +F+ N+++PA V + V+ Sbjct: 240 IDENVDPVGACVGPKGSRVQMIVDELKGEKIDIIKYSEEPKEFISNSLSPAKVLNARVNP 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK 347 + T + V L+ AIG+ GQN RLA++L+GW++++ + ++ Sbjct: 300 EDKTARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVKTD 346 >UniRef50_B3WER8 Transcription elongation protein NusA (Transcription termination-antitermination factor NusA) n=78 Tax=Firmicutes RepID=B3WER8_LACCB Length = 417 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 134/354 (37%), Positives = 223/354 (62%), Gaps = 3/354 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE++ ++A+ EK + +E + EALE+AL +A K+ Y Q +V V+ D K GD + Sbjct: 1 MSKEMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHIYA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V DEV E++L+ A +++ +GD ++ ++ F RI QTAKQVI+Q+VRE Sbjct: 61 VKEVTDEVFDSRLEVSLKEALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER++V D++ ++E EI+ GVV++ + I ++LG EAV+ R+D +P E + DR++ Sbjct: 121 AERSIVYDEYSQYEDEILQGVVERRDNRFIYVNLGK-IEAVLGRQDQMPNEKYEAHDRIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V ++G Q+FV+R+ P ++ LF EVPEI + +EI AR+ G R KIAV++ Sbjct: 180 VYVTKVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 + +D VG VG RGARVQAV EL GE +D+V W+++PA ++ NA+ PA V ++ ++ Sbjct: 240 TNDAVDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFND 299 Query: 301 D--KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 352 + + + V L+ AIG+ GQN RLA++L+G+++++ +++ E Sbjct: 300 EANDRSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVEFVDDDEL 353 >UniRef50_C4XIM5 Transcription elongation protein NusA n=4 Tax=Desulfovibrio RepID=C4XIM5_DESMR Length = 463 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 143/432 (33%), Positives = 258/432 (59%), Gaps = 9/432 (2%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+ ++ +S ++ + R+ + + LE A+ ++ +KY + +DV V + + G+ + ++ + Sbjct: 3 ELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQFKV 62 Query: 64 VVDEVTQ--PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VV++ P EI L A+ D ++ L D + ++ RI Q+AKQVI+Q++R+A Sbjct: 63 VVEDDDVADPAAEICLSDAKAIDPNVALEDEMGFKLAVEDLGRIAAQSAKQVIIQRMRDA 122 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E+ ++ +++++ +GEII+G++++ +R ++LG EA++ +E+ +PRE ++ GDRV+ Sbjct: 123 EQEIIYEEYKDRKGEIISGIIQRRDRAGWIINLGR-TEALLPKEEQIPRERYKRGDRVQA 181 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + V P RG Q+ V+R+ + + LF EVPE+ + ++I A ARDPGSRAK+AV + Sbjct: 182 FIIEVLPSGRGPQIIVSRTHGDYMKALFAREVPEVSDGTVKIVAVARDPGSRAKVAVISK 241 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D+ +DPVGACVG+RG+R+Q + EL GERIDIV+W+ A + NA++P+ V I VDED Sbjct: 242 DRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIASYAANALSPSRVTRISVDED 301 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 + ++++ V L AIGR GQNV+LA++L GW+++++T + EA+A+ + Sbjct: 302 EKSLEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIVTESRFR-----EANASKKFLEQ 356 Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 + E ++ GF ++E+LA + + I G+ + LR A + + Sbjct: 357 LASVAEIHVDNIIAAGFVSMEQLAEADDEAIDAIVGMTPSKRDDLR-AALKLMGAFDKPA 415 Query: 422 EESLGDNKPADD 433 D +D Sbjct: 416 PADDEDAPTDED 427 >UniRef50_Q5GS98 Transcription elongation factor, NusA n=13 Tax=Rickettsiales RepID=Q5GS98_WOLTR Length = 520 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 161/498 (32%), Positives = 273/498 (54%), Gaps = 15/498 (3%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N +I+ +S +K L E I +ALESA+ +KY + V V IDR +G+ ++R Sbjct: 21 NLDIIKTAGEISLQKGLDFEVIMKALESAIEAVAYQKYGSKSKVVVNIDRSTGEVISYRE 80 Query: 62 WLVVDEVTQPTKE-----ITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQ 116 VVD+ + ITL A+ E +GD + +++ S+ D + + A+Q I Q Sbjct: 81 LKVVDDEPNGEEHNGYGSITLTQAKLIKEDAKVGDTI-NELLSLNTDLASARIAQQRIAQ 139 Query: 117 KVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPG 176 ++ E ++F++ GEI G+VK+V ++ +D+ N A + +++ E FR G Sbjct: 140 VIKYEELKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDI-NGTRAYLPLRNLIGGELFREG 198 Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 D+++ + +V+ G Q+ ++R+ L L E+PEI + ++ +K ARD GSR+K+ Sbjct: 199 DKIKAYIQTVKRSDDGRQIILSRASEGFLEALLSQEIPEIADGLVTVKGIARDAGSRSKV 258 Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296 AV + DK IDPVGACVG++G R++A+ EL GE+ID+V + + QFVI A+ PA+V+ + Sbjct: 259 AVFSPDKNIDPVGACVGVKGERIKAIIHELNGEKIDVVHYFSDLGQFVIKAITPAEVSKV 318 Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356 ++DE ++ +++ V L+ AIG+ GQNVRLAS+L GW++ +++ + E Sbjct: 319 IIDESENCVELIVAEDQLSLAIGKKGQNVRLASELIGWKIEILSTQQESERRNRELSQCS 378 Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 416 F + L+++E +LV EGFS++E+++ +KEL IEG +E LR RA L Sbjct: 379 ALFAEALNLEEIMGQLLVTEGFSSVEDISNASIKELASIEGFNEDIASELRNRANRYLKA 438 Query: 417 IAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLT-- 474 + E L D++NL + D L+ G+ TLE++A+ + I + Sbjct: 439 ENDRKIEELKSLGMESDVINLP-LSIDDKIALSEHGIKTLENIADLSSYEFCSILSSSAS 497 Query: 475 -----DEKAGALIMAARN 487 ++IM AR Sbjct: 498 DKENLKNTVNSIIMEARK 515 >UniRef50_B3DXW5 Transcription elongation factor n=2 Tax=Verrucomicrobia RepID=B3DXW5_METI4 Length = 441 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 138/412 (33%), Positives = 238/412 (57%), Gaps = 3/412 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN+E+LA++E + EK + R+ EA++SAL A KK D+RV+I K+G + Sbjct: 24 MNQEVLAIMEYMEKEKGINRQVFIEAMQSALLAAAKKSIGPARDLRVEIHPKTGRINVRA 83 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + VV++V +I+L+ AR D ++N+GD VE ++ F RI Q KQ I Q ++ Sbjct: 84 KLEVVEKVQNSHDQISLKRAREIDPNVNIGDLVEVEVTPKDFGRIAAQVFKQTINQALKG 143 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 ER MV+ +F++ I++G ++++ R +I +DLG E ++ ++ +P E + G+R++ Sbjct: 144 IERKMVLSEFKDRINNIVSGTIRRIERSDIIIDLGRY-EGIMPFKERVPTEEYVVGERIK 202 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + SV G + ++RS P ++ L +EV E+ ++++E+KA AR+PG R KIAV + Sbjct: 203 AYVLSVDDTPHGPMIILSRSHPNFILRLLELEVSEVADKIVEVKAIAREPGFRTKIAVWS 262 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ++ +IDPVG+CVG+RGARV+ + EL E+ID+ W N + I A+ PA V + VD+ Sbjct: 263 SNPKIDPVGSCVGVRGARVKNIVRELHSEKIDLFKWSPNVEELAIEALKPAKVKKVEVDQ 322 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDL-QAKHQAEAHAAIDTF 359 H + + V+ N + A+G+ G+N LAS++ GW+++++ + A + Sbjct: 323 QNHRVKVTVDEENYSIALGKKGKNAWLASKIVGWDIDIVKEPSFVVDNFTQKITKAAEEM 382 Query: 360 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELL-EIEGLDEPTVEALRERA 410 L ID+ A +V GF E +A ++L+ + LD + L+E A Sbjct: 383 ASSLAIDQSVAEQIVRAGFINPEAVAESEEEDLMSALPELDPQLIHRLKEAA 434 >UniRef50_B5JHK3 Transcription termination factor NusA n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHK3_9BACT Length = 419 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 147/421 (34%), Positives = 247/421 (58%), Gaps = 2/421 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+ EIL+V+E + EK + RE + A+ +A+ A K ++++ ID + G + + Sbjct: 1 MSSEILSVLEYMEKEKGIGREDMISAIVTAIKNAAAKGVNAGQELKITIDPRHGKMNAWA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVD V+ P EI+LE AR D+ LN+GD E +I+ RI QTA+Q I+Q++R+ Sbjct: 61 LLDVVDSVSDPKTEISLEKARQIDDELNIGDVFEKEIDPAYLGRIAAQTARQAIMQRLRQ 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + D F++ G+I++G+V++ R ++ +DLG AEA++ D +P E++ PG+R+R Sbjct: 121 FEKERIYDDFKDQVGDIVSGIVRRRERGDLIVDLGK-AEAMMPSRDQVPGEDYSPGERIR 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +L + RG +L +TRS P+ ++ LF +EV EI + ++I+A +R+PG R KIAV + Sbjct: 180 CLLLKIEATNRGPELILTRSNPKFVLRLFDLEVTEIADGTVKIEAFSREPGYRTKIAVTS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 +D ++DPVGACVG RGARV+++ ELGGE+IDI+ + ++P + + A+ PA ++++DE Sbjct: 240 SDPKVDPVGACVGARGARVKSIVRELGGEKIDIIRYFEDPKEMALEALKPAIPRNVIMDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + I V +LA AIGR GQN RL S+L GW++++M + + + A Sbjct: 300 RSRRISIEVSEDDLAIAIGRKGQNARLTSKLVGWKIDIMKEEVKVVSMETKQAEAAQGLN 359 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420 + ID A LV G + E V +L+E+ G + + + + + Sbjct: 360 QIEGIDSATAERLVNNGLISPELFLDVEEDDLVEM-GFSAEEAADIIAKVTTFIQSQNIS 418 Query: 421 Q 421 Sbjct: 419 S 419 >UniRef50_C1F696 Transcription termination factor NusA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F696_ACIC5 Length = 548 Score = 433 bits (1114), Expect = e-120, Method: Composition-based stats. Identities = 149/433 (34%), Positives = 245/433 (56%), Gaps = 10/433 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M + +EA+S +K + E + A+E A+A AT+K Y+ + ++R ++DR++G+ + Sbjct: 1 MASVLYQSIEALSRDKGIDPEVVVGAVEDAIALATRKYYKTQENMRAELDRETGEIRAYI 60 Query: 61 RWLVVDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 VV+ + P +ITLE AR + +G + + RI Q AKQVI QK Sbjct: 61 YKAVVETPELIEDPLNQITLEEARQLAPGVEVGGEIRFYKPTDVLGRIAAQMAKQVIFQK 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 VREAER V +++ GE++T VK+V ++ DLG AEA + + + E F G+ Sbjct: 121 VREAERDTVFNEYAHRVGEVLTATVKRVEMQDVIFDLGK-AEARMPKREQSRLEQFSVGE 179 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 RVR VL V A+G Q+ V+R+ PE++ LF+ EVPEI + + I+A AR+ G R KIA Sbjct: 180 RVRVVLLRVDRAAKGPQVIVSRAAPELVTSLFQGEVPEIYDNTVTIRAIAREAGERTKIA 239 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V + DK +DPVGACVGM+G RVQ++ EL GE+IDI+ + + F A+ PA V+ + Sbjct: 240 VMSRDKDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEFSEEVTTFAERALQPAKVSRVS 299 Query: 298 V-DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356 + D + +++ V+ L+ AIG+ GQNVRLA++L GW++++ + ++ + + + + Sbjct: 300 IADLSEKHLEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVEQQMGGFA 359 Query: 357 D-----TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 411 + ++ E LV G +T+E LA + ++L EI G+ E T+E + + Sbjct: 360 QGGTATAIEEVKELGESIIQKLVAAGITTVESLADMTPEQLEEIPGIGEKTLEKISTAVR 419 Query: 412 NALATIAQAQEES 424 + +E Sbjct: 420 HYFGQYEPGEERP 432 >UniRef50_D1N2Z3 NusA antitermination factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2Z3_9BACT Length = 414 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 145/413 (35%), Positives = 233/413 (56%), Gaps = 6/413 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M E+L ++E + E+ + R+ + +ALESA+ TA +K +++V+ID +G + Sbjct: 1 MANELLTILEYIEQERGISRDSLIKALESAILTAARKSIHPASELKVKIDPVTGQIQAWA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV+E ++ + AR + LG+ VE ++ F RI QTA+Q IVQ++R+ Sbjct: 61 TLEVVEENP-TCDQLVIARARERFPDVQLGEKVEWEVTPRNFGRIAAQTARQAIVQQLRK 119 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ V ++F + G+II+G V++ NI +D AE ++ ++ + E + PGD +R Sbjct: 120 AEKENVQEEFADRIGQIISGTVRRFEAGNIIIDFQK-AEGIMPSKEKIHDEQYMPGDIIR 178 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +L V G L V+RS PE + LF E+ EI + V++I AR+ G R KI+V + Sbjct: 179 ALLLRVDINTAGPSLIVSRSCPEFVTRLFEREIAEIHDGVVKIMGIAREAGKRTKISVMS 238 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D R+DPVGACVGMRG RV+ ++ ELG ERIDIV +D + ++ NA+ PA V S+ V+E Sbjct: 239 TDPRVDPVGACVGMRGQRVRNITNELGNERIDIVPYDADIRKYATNALLPAKVQSVEVNE 298 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKH----QAEAHAAI 356 KH + + V A G+ QNVRL S+L GW +N+ ++ A+ + A Sbjct: 299 AKHELIVRVTDEQSKLAFGKKAQNVRLCSKLIGWNINIRNEEERGAEAGHSIGEQLKIAA 358 Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRER 409 + + + E A +LV G+ T++ + + LLEIEG+D ++ ER Sbjct: 359 QKLAEAIGVSEATAGLLVNNGYVTVDGVKAADPEALLEIEGIDTAEMQNALER 411 >UniRef50_B2KC94 NusA antitermination factor n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KC94_ELUMP Length = 463 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 148/457 (32%), Positives = 248/457 (54%), Gaps = 27/457 (5%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 KE++ +E++ EK + R+ I + +E AL +A +K + + +I+ + GD F+ Sbjct: 6 KELMMALESLEREKNIKRDDIIKTIEDALVSALRKNLGKTAQISAKINPEEGDIKAFQVL 65 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 +V+ V P EI+LE A+ D+ +G + + +E F RI Q AKQV++QKVR E Sbjct: 66 NIVEIVANPEMEISLEQAKAMDDRSEVGGTITNVLEVEDFSRIAAQIAKQVLIQKVRGIE 125 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 R +F+ EGE+ITG V++ + +I +DLG EA++ + + RE + G R++ + Sbjct: 126 RENTYKEFKPREGEVITGSVRRFSDRDIVVDLGK-VEAILPYSEQIKRERYSNGSRIKAI 184 Query: 183 LYSV-------------------------RPEARGAQLFVTRSKPEMLIELFRIEVPEIG 217 + V RG + ++R+ P L +LF++EVPEIG Sbjct: 185 ITKVLSQQDLLTIGEDPVLGRYKSAAFKMDKGQRGPYVILSRTSPAFLEDLFKVEVPEIG 244 Query: 218 EEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWD 277 E ++EIKA RDPG RAK+ V++ D ++DP+G CVGMRG R++A+ EL GERID++ + Sbjct: 245 EGIVEIKAIQRDPGFRAKVVVRSYDNKVDPIGTCVGMRGIRIRAIMNELSGERIDLIPYS 304 Query: 278 DNPAQFVINAMAPADVASI-VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWEL 336 ++ ++N++APA S+ ++ ++ I V LA AIG++ QN++LAS+L+GWEL Sbjct: 305 EDVTTMIMNSIAPARANSVKIISAEEKKALIIVPDDQLAIAIGKDWQNIKLASKLTGWEL 364 Query: 337 NVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIE 396 V + + QA I A LV+ GFS++E++A + + L ++ Sbjct: 365 EVKSESQKLQEGQATVDNLESLLASVEGIGPKTAETLVKAGFSSVEKIAALEPEHLATVQ 424 Query: 397 GLDEPTVEALRERAKNALATIAQAQEESLGDNKPADD 433 G+ E + + E AK L T + + N + Sbjct: 425 GIGEKSAAKIIEGAKKYLETQGEEVLQEEAVNDDNQE 461 >UniRef50_B2UQQ4 NusA antitermination factor n=2 Tax=Verrucomicrobiaceae RepID=B2UQQ4_AKKM8 Length = 431 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 148/432 (34%), Positives = 243/432 (56%), Gaps = 17/432 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKY---EQEIDVRVQIDRKSGDFD 57 M +I A+++ EK L REKI ALESA +A +K +R +I+ G Sbjct: 1 MTNDIKALIDYYEREKGLSREKILLALESAFLSAYRKMVPGSGSINYLRAEINVDKGKVR 60 Query: 58 TFRRWLVV--DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 F VV +E + +I L A D++ L D + I F RI QTA+Q ++ Sbjct: 61 IFADLEVVPDEEYSDKFNQIPLSLAVKLDKNAVLHDLLPTNITPKGFGRIAVQTARQTML 120 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRP 175 QK+ +AE+ M+ D+F++ G+++TG +++ + +I +DLG E V+ + +P E++ Sbjct: 121 QKLLDAEKEMLYDEFKDRAGDLVTGTIRRFEKGDIFVDLGK-FEGVMTSRERVPNEDYSV 179 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 GDR+R + VR EARG ++ ++RS P ++ LF EV EIG++ +EI AR+ G R K Sbjct: 180 GDRMRFYVVEVRTEARGPEVILSRSHPNLVRRLFESEVVEIGDQTVEIHGIAREAGYRTK 239 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 +AV ++D ++DPVGACVGMRGARV+ + EL E++DI+ W ++P FV A++P + Sbjct: 240 VAVISHDDKVDPVGACVGMRGARVKNIVRELNNEKVDILEWTEDPVTFVREALSPVEPRE 299 Query: 296 IVVDEDKHTMDIAVEAG-NLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA---- 350 I VDE+ + + V+ +L++AIGR GQN RL S+L GW++ V D +A+ + Sbjct: 300 ITVDEEARKIFVIVQDDKDLSKAIGRRGQNARLTSRLMGWDVQVRVFDVQEAEKRQSQAA 359 Query: 351 ------EAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVE 404 + AA T ++ L+I E+ A LV G + L L ++ E G+ Sbjct: 360 AEEVMRQCQAAAKTLSEQLEIPEETAMGLVTMGGTDLVALTGFEASDIAESMGIPAEEAA 419 Query: 405 ALRERAKNALAT 416 + ++A++ ++ Sbjct: 420 QILDKARDLISQ 431 >UniRef50_B1ZX42 NusA antitermination factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZX42_OPITP Length = 408 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 146/409 (35%), Positives = 240/409 (58%), Gaps = 5/409 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+ EIL+V+E + EK +PR + + +AL TA +K +++++I+ K+G + Sbjct: 1 MSSEILSVLEYMEKEKGIPRADMIATIANALKTAAQKGVNSGQELKIEINAKNGQLHAWC 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVD V+ P EI +E A+ +G+ +E +I+ T RI QTA+Q ++Q++R+ Sbjct: 61 LLKVVDSVSNPKTEIHVERAQALKPGAIIGEIIEKEIDPSTLGRIAAQTARQAVMQRLRQ 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + D F++ G I+TG V++ R+++ +DLG AEAV+ ++ +P E ++PG+R+R Sbjct: 121 FEKDRIFDDFKDQVGNIVTGTVRRRERNDLYIDLGK-AEAVMPAKEQVPGEEYQPGERIR 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +L ++ RG ++ +TR P+ + LF +EV EI + ++I+A AR+PG R KIAV + Sbjct: 180 CLLLNIESTPRGPEIILTRGSPKFVRRLFELEVTEIADGTVKIEAFAREPGYRTKIAVIS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D ++DPVGACVG RGARV+ + EL GE+IDI+ + +P + +I AM PA I +DE Sbjct: 240 TDPKVDPVGACVGARGARVKTIVRELNGEKIDIIRYFASPREMIIEAMKPAVPREITLDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 H + + V +LA AIGR GQN RL S+L GW L++ ++ +A AI + Sbjct: 300 KNHRILLKVATDDLAIAIGRKGQNARLTSRLIGWRLDI---EEFRAVGDDPRGNAIASLV 356 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRER 409 K +D A LV+ G ++ V +L++ G E + R Sbjct: 357 KAFALDATVAGRLVDMGINSPAAFEGVEANDLVDA-GFTEAEATDIIGR 404 >UniRef50_A9AV46 NusA antitermination factor n=11 Tax=Bacteria RepID=A9AV46_HERA2 Length = 444 Score = 426 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 139/442 (31%), Positives = 242/442 (54%), Gaps = 12/442 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQE---IDVRVQIDRKSGDFD 57 M + A + ++ E+ +PRE + + +E AL +A ++ +DV+++++ +G Sbjct: 1 MKSDFYAAISQIAAERGIPRESVQDVVEQALISAYRRYLGSNPPPVDVKIELEPNTGRIR 60 Query: 58 TFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 + VVDEV EI +E AR + +G+ V + F RI QTAKQV++Q+ Sbjct: 61 VYAEKQVVDEVMDDRFEIDIEDARNVRADVEIGETVYVESTPDDFGRIAAQTAKQVVLQR 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 ++E ER + ++ + EGEI+T V++ + N+ L++G AEA++ +++ + +N+R G Sbjct: 121 IKEVERDHIYGEYFDREGEIVTATVQRTAKGNVILEVGR-AEAILPQKEQISHDNYRHGQ 179 Query: 178 RVRGVLYSVRPE-ARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 R++ L R + RG +L +R+ +++ LF +EVPEI +EIK+ AR+PG R+K+ Sbjct: 180 RLKVYLMEARRDDPRGPRLVASRTHKDLIKRLFEMEVPEIYNGTVEIKSIAREPGLRSKV 239 Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296 AV + IDPVG+CVGMRG R+Q + EL GE+ID+V W + F+ NA++PA V + Sbjct: 240 AVHARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWGADMRVFIANALSPAQVVEV 299 Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356 +DE + T + V L+ AIG+ GQNVRLA++L GW +++ + L + +A A A Sbjct: 300 HLDEGEKTATVVVPDKQLSLAIGKEGQNVRLAAKLVGWRIDIKSASSLLEEERAAAEARE 359 Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKE--LLEIEGLDEPTVEALRERAKN-- 412 ++ + + +T VE ++ L ++ L +E + E LR A+ Sbjct: 360 AAASEQMLQEAALSTAKVETRKVRVDSLVTYQGRQYGPLPVELIGEEVA--LRAAAQKLN 417 Query: 413 -ALATIAQAQEESLGDNKPADD 433 A + +D+ Sbjct: 418 IYFNDKLIASYIIDDEAGDSDE 439 >UniRef50_Q044C0 Transcription elongation factor n=45 Tax=Bacilli RepID=Q044C0_LACGA Length = 423 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 140/407 (34%), Positives = 232/407 (57%), Gaps = 3/407 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE++ + EK + +E I +A+++AL A KK Y Q +V V D K G+F Sbjct: 18 MSKEMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNA 77 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVDEV E++L+ A + + +GD + ++ F R+ QTAKQVI+Q++RE Sbjct: 78 IKTVVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLRE 137 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER ++ ++ +++ EI+TG V++ + + + +GN EAV+ D LP EN+ P D+VR Sbjct: 138 AEREHIISEYSQYKDEIVTGTVERRDNRFVYVKIGN-VEAVMTHNDQLPGENYNPQDKVR 196 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 ++ V +++GAQ+ V+R+ P+++ LF EVPE+ + +EI + AR+ G R KIAVK+ Sbjct: 197 VLVTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKS 256 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV-- 298 ND IDPVG VG +G RVQ + ELGGE ID+V +++NP+ F+ NA+ PA+V ++ Sbjct: 257 NDPDIDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSG 316 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 D+D + V L+ AIG+ GQNVRLA++L+G+++++ ++ D Sbjct: 317 DDDDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQ 376 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEA 405 ++ + AT E + +++ D E Sbjct: 377 DIDDSNVSNEEATESTAEQLEEDSSEDFPNGEDVDSALDDDADKDEE 423 >UniRef50_UPI0001C3544A transcription elongation factor NusA n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3544A Length = 401 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 131/346 (37%), Positives = 220/346 (63%), Gaps = 1/346 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKE+L + + E + ++ + EA+E++L TA K + + +V+V ++ ++ DF + Sbjct: 1 MNKELLEALNILEKENNISKDTLLEAIENSLLTACKNHFGKADNVKVSMNHETCDFSVYA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV+EV P +I+L A+ D ++GD V+ I+S F RI TQ AK VI+QK+RE Sbjct: 61 EKEVVEEVEDPLLQISLAEAKMTDPKYDIGDIVQCPIDSKKFGRIATQNAKNVILQKIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 R + + + E E++TG+V++ N+S++LG +A++ +M+ E F+ +R++ Sbjct: 121 EGRKALYNDWYCQEKEVVTGIVQRYLGKNVSINLGK-VDAILNETEMVKGEVFKATERIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V+ +G ++ V+R+ P+++ LF EV E+ + +EIKA AR+ GSR KIAVK+ Sbjct: 180 VYVLEVKDTPKGPRISVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVKS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ND+ +DPVGACVG+ GARV ++ EL GE+IDI+ WDDNPA + NA++PA V +V DE Sbjct: 240 NDQNVDPVGACVGLNGARVNSIVNELRGEKIDIINWDDNPAYLIENALSPAKVICVVADE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA 346 + + V L+ AIG+ GQN RLA++L+G+++++ + + Sbjct: 300 ESREAQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQARE 345 >UniRef50_D1KAN2 Transcription elongation factor n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KAN2_9GAMM Length = 390 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 198/397 (49%), Positives = 277/397 (69%), Gaps = 8/397 (2%) Query: 97 IESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGN 156 +E+ F RI Q KQVI+QKVREAER ++VD + + GE+I VK+V+R N+ +D+G Sbjct: 1 METEEFGRIAAQIFKQVIIQKVREAEREVIVDDYTKRVGEVIIVTVKRVDRGNVYVDMG- 59 Query: 157 NAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEI 216 + +I + D++P E+ R DR+R + V+ RGAQ+F++R+ PEM+I+LF +EVPEI Sbjct: 60 GVDGMISKFDLIPNESTRKNDRLRAYIKDVKSTPRGAQIFLSRTAPEMMIQLFEMEVPEI 119 Query: 217 GEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLW 276 E VIEI ARDPG R+K+AVK+ DKR+DP+G+C+GMRG+RVQAVS EL GER+DI+LW Sbjct: 120 SEGVIEIMGGARDPGLRSKLAVKSKDKRLDPIGSCIGMRGSRVQAVSNELNGERVDIILW 179 Query: 277 DDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWEL 336 D++PAQFVINAMAPA+V+SIVVDEDK++MDIAVE LA AIGR GQN++LAS+L+GW+L Sbjct: 180 DEDPAQFVINAMAPAEVSSIVVDEDKNSMDIAVEDDQLALAIGRGGQNIKLASRLTGWKL 239 Query: 337 NVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIE 396 NVM++++ + K E + L +D + A VL+EEGF +++E+A L IE Sbjct: 240 NVMSINESEDKQAEENQKVSGKLAEQLGVDSEVAGVLIEEGFGSIDEVADADADALESIE 299 Query: 397 GLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTL 456 D VE L+ERA +A A LGD + ++ L+ +EG+D DL L + T+ Sbjct: 300 EFDVSMVEELQERASDAQLVQA------LGDAESSEVLMGVEGMDEDLVQALIEAEIATV 353 Query: 457 EDLAEQGIDDLADIEGLTDEKAGALIMAAR-NICWFG 492 +DLAE ID+L DI+ + EKA ++IM AR N WF Sbjct: 354 DDLAELSIDELLDIQEMDKEKASSMIMTARENEGWFD 390 >UniRef50_Q2GDP1 N utilization substance protein A n=2 Tax=Neorickettsia RepID=Q2GDP1_NEOSM Length = 537 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 156/506 (30%), Positives = 256/506 (50%), Gaps = 36/506 (7%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N +I+ + +V+ ++ L + +F A+ LA K+ + + V+ID+KSG+ +R Sbjct: 10 NLQIVESINSVAEKEGLSPDTLFRAIGIELAHEIGKRQYGDHRIFVEIDKKSGEILVSKR 69 Query: 62 WLVVD-----------EVTQPTKE-----------------ITLEAARYEDESLN--LGD 91 LVV+ EVT + I L AR + S+ GD Sbjct: 70 LLVVEDSDKARMLEQMEVTTEESDDLPSSFRAEEKVHYDGVIDLSTARLKYPSIEHKAGD 129 Query: 92 YVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKK-----VN 146 + + + S + I + K + + + R ++ GEI+TG+VKK Sbjct: 130 IITEHLPSFSSGYIIARVMKAKLERLITSLVREKQYHCYKGRVGEIVTGIVKKSIDFKTG 189 Query: 147 RDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLI 206 +I +D+ E ++ ++ E+FRPG+RV+ V+ V Q+ ++RS + Sbjct: 190 SRSIIVDIA-GVEGLLPYSSLVKGESFRPGERVKCVIQKVEYSVVKPQILLSRSSGSFVA 248 Query: 207 ELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTEL 266 +LF +VPEI + V+EI+ ARD GSR+K+AV ++D+ IDPVGAC+GM G+R+ AV EL Sbjct: 249 QLFSQQVPEIYDRVVEIRKVARDAGSRSKVAVFSSDRNIDPVGACIGMGGSRINAVVNEL 308 Query: 267 GGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVR 326 GE+IDIV + ++ A F+ NA+ P I V+E+ +++ V +++ IGR GQNV Sbjct: 309 HGEKIDIVEYSNDTATFLANALKPIRPVKITVNEETKKIELVVPDESVSLVIGRGGQNVY 368 Query: 327 LASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAY 386 L S L G+ + V++ + K E + F + L+++E A +LV EGFST+EE+A Sbjct: 369 LLSSLLGYRVEVLSDAEFSKKKMEEFISGTARFVEALNVEEVIAQLLVTEGFSTVEEIAD 428 Query: 387 VPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAF 446 L IEG D+ E +R RA + + K ++L L D L Sbjct: 429 CNTSRLAFIEGFDKDIAEEIRSRAVEYVNEQPKRVRALAEKYKANPNMLALSSFDTGLLE 488 Query: 447 KLAARGVCTLEDLAEQGIDDLADIEG 472 L + G+ LE +AE D+L ++ G Sbjct: 489 VLFSSGLTDLEKVAELSCDELREVIG 514 >UniRef50_A6NTX6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A6NTX6_9BACE Length = 400 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 130/383 (33%), Positives = 218/383 (56%), Gaps = 11/383 (2%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKY-EQEIDVRVQIDRKSGDFDTFR 60 KE A + + EK +P+ + E + AL +A K+ + ++ V+ D + G+ + Sbjct: 16 GKEFFAAIGMIEQEKGIPKGYMLEKITQALISAYKRDHEGAGDNIMVEADEEKGEVRMYV 75 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + VV+ V P E++L AR + LGD V ++++ F RI QTA+QVI+Q +RE Sbjct: 76 KKDVVETVDNPYTEVSLADARQRLPHIRLGDVVRVEVKTKDFGRIAAQTARQVIIQGMRE 135 Query: 121 AERAMVVDQFREHEGEIITGVVKKVN--RDNISLDLGNNAEA---VILREDMLPRENFRP 175 AER M+ D+F E E++TGVV +++ + SL +G+ EA + + + E FR Sbjct: 136 AERGMIYDEFSSKEHELLTGVVTRIDPRSGSASLRIGSGNEATDAFLAAGEQVRGETFRE 195 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 GDR++ + VR +G Q+ ++R+ P ++ LF +EVPEI + +E+K+ AR+ GSR K Sbjct: 196 GDRLKVYVVEVRRSTKGPQVLISRTHPGLVKRLFELEVPEIFDGTVEVKSIAREAGSRTK 255 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 +AV + D +DP+GACVG RG RV + EL GE++DI+ + ++PA++V A++PADV S Sbjct: 256 LAVWSADPNVDPIGACVGPRGQRVNNIVEELKGEKVDIIKYSEDPAEYVAAALSPADVIS 315 Query: 296 IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV-----DDLQAKHQA 350 + +D + + V L+ AIG+ GQN RLA++L+G+++++ D+ + Sbjct: 316 VTTLDDGKSCRVVVPDDQLSLAIGKEGQNARLAAKLTGFKIDIKPASNPGGDEADELDEV 375 Query: 351 EAHAAIDTFTKYLDIDEDFATVL 373 D + D E L Sbjct: 376 LVDDVADEADETADAAETADESL 398 >UniRef50_C1SH20 Transcription termination factor NusA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SH20_9BACT Length = 460 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 144/425 (33%), Positives = 237/425 (55%), Gaps = 10/425 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE+ VV+ + EK + RE + EALE ++ A +K + ++ V +D G + Sbjct: 1 MSKELTKVVDEIGREKGIARELLQEALEESIFAAVARKIGKLLEPDVFVDIDKGTIEILL 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V + V EI ++ A E+ LGD + R AKQ + +K+R+ Sbjct: 61 PKEVCESVDDKWTEIHIDNADEFKENPQLGDVIMVPATLEELGRQAALVAKQKLFEKLRD 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ +V+DQF++ GEI+ GVV K +RDN+ +++G EAV+ + +M+ + F GD VR Sbjct: 121 AEKQVVLDQFQDRIGEIVNGVVLKTDRDNLIINIGK-TEAVLPKREMIGGDFFNRGDYVR 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +L +R QL ++R+ PE + +LF E+PE+ E +I++KA +R+PG RAK+AV T Sbjct: 180 ALLLDIRIIKGWPQLILSRTHPEFMKKLFETEIPEVFEGIIDVKAVSREPGDRAKVAVYT 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 + IDPVGAC+G++G R+ A+S EL GE+ID++ W + +FV NA++PA+V + E Sbjct: 240 TNSSIDPVGACIGLKGVRINAISNELRGEKIDVIEWSPDSIKFVCNAISPAEVVLTNIFE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 D+ T++I V L+ AIG+ GQNVRLA++L+ W L+V+ + + Sbjct: 300 DEETIEIVVPDDQLSLAIGKKGQNVRLAAKLTEWRLDVLKESEYAEIRKERMQDQEQDLK 359 Query: 361 K---------YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 411 + +D D L+E G+ +E+L+ KE+ + +E +L A Sbjct: 360 EFYEMYNLDNLEGLDADTMHSLIEAGYDDIEKLSNADFKEVAQELECEEEKAVSLINMAL 419 Query: 412 NALAT 416 + LA Sbjct: 420 DYLAN 424 >UniRef50_B5YEH2 Transcription termination factor NusA n=2 Tax=Dictyoglomus RepID=B5YEH2_DICT6 Length = 364 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 129/345 (37%), Positives = 205/345 (59%), Gaps = 1/345 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 + ++ V+E + EK L + + EAL AL +A KK Y RV+I+ + F Sbjct: 3 LGEDFWVVLEQIITEKKLDKNVVLEALRKALLSAFKKAYGTSKGARVEINFNKQEISIFV 62 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV++V EI+LE A+ LGD +E +IE F RI Q AKQVI+Q ++E Sbjct: 63 VKKVVEKVNDNISEISLEEAKSLKPDAKLGDEIEIEIEPQEFGRIAVQVAKQVIMQSLKE 122 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER ++ ++++ EGE++ G V ++ + N+ + + EAV+ ++ +P E + G R+R Sbjct: 123 AERRILYEKYKAKEGELVNGTVVRIEKGNVYVRFPD-IEAVLPVKEQIPGEEYWIGRRLR 181 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 L VR + + ++RS P L LF +EVPEI E +EI + AR+PG R+K+AV + Sbjct: 182 AYLLEVRKTTKDPLVILSRSHPGFLKRLFELEVPEIREGTVEIVSIAREPGMRSKVAVYS 241 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 + +DP+GACVG +G R+Q + EL GE+IDIVLW +PA+FV +++PA S+ + E Sbjct: 242 HLPEVDPIGACVGYKGVRIQNIINELNGEKIDIVLWSKDPAEFVARSLSPAKPISVEIRE 301 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ 345 ++H + V + AIG++GQNVRLA +L+ W ++V T + Sbjct: 302 EEHKAIVIVPPDQFSLAIGKDGQNVRLAVKLTSWRIDVRTPEQYA 346 >UniRef50_D1B5D7 NusA antitermination factor n=3 Tax=Synergistaceae RepID=D1B5D7_THEAS Length = 369 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 126/344 (36%), Positives = 214/344 (62%), Gaps = 2/344 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 + +E ++ + EK L + I +LE+AL +A +K +V V ID ++G+ Sbjct: 3 LGREFGKALKQLEAEKGLSLDVISSSLEAALVSAYRKFKGGNQNVEVFIDFENGEIFLSE 62 Query: 61 RWLVVDEVTQPTKEITLEAA-RYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 VV EVT P EI++E A R + GD + ++ F RI QTA+QVI+Q+++ Sbjct: 63 VKQVVREVTCPDTEISVEEAHRMGFGDVEEGDVIRIEVFPENFGRIAAQTARQVIIQRLK 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 +AER ++ ++F + G+++ G + KV D I + L + EA++ RE+ + E +R GDR Sbjct: 123 DAERQIIFEEFADRTGDLVQGTIFKVEGDQILVRLNDRTEAILPREERVLGEAYRVGDRY 182 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 + L VR +G ++ V+R+ P +L +LF +EVPEI + +IEIK R+ G R+K+AV+ Sbjct: 183 KFFLLDVRQTTKGPRIVVSRTHPGLLRKLFELEVPEIRDGIIEIKNVVREAGGRSKVAVQ 242 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV-V 298 + D +DPVGACVG +G R+++V ELGGER+D+++W +P +V NA++PA V + + Sbjct: 243 SLDSNVDPVGACVGPKGTRIKSVMDELGGERVDVIVWSSDPIAYVKNALSPAKVVKVEPL 302 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 + + + + V L+ AIG+ GQNVRLA++L+GW++++ ++ Sbjct: 303 LDQERALRVFVRPDQLSLAIGKAGQNVRLAARLTGWKIDIKVLE 346 >UniRef50_B5YJX4 Transcription termination factor NusA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJX4_THEYD Length = 365 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 134/358 (37%), Positives = 221/358 (61%), Gaps = 1/358 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M KE+ +VE + EK + ++ + E LE+AL +A +KKY + ++++I+ ++ D + F Sbjct: 1 MGKELKFLVEQIMREKGITKDAVIELLETALISAIRKKYGNKSSIKIKIEPQTFDINIFE 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV+EV EI++E + + +GD VE + F RI QTAK V+ QK+RE Sbjct: 61 IKKVVEEVKDSASEISIEEVKQKYIDKGIGDTVEVPLSIQDFGRIAVQTAKHVLFQKIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 ER+ + ++F++ G I++G V + + N + +G AEA++ +++LP++N + GD V+ Sbjct: 121 IERSQIFEEFKDKVGNIVSGTVLRKEKGNFYILVGK-AEAILPDKEVLPQDNLKRGDIVK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 ++ V+ + + ++R+ P ++ LF +EVPEI + ++EIK ARDPG R KIA + Sbjct: 180 AYIFEVKQTPKEPIIKLSRTHPNFVVGLFTLEVPEIQDGIVEIKTIARDPGERTKIAASS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D +DPVGACVGM+G RVQAV EL GERIDI+ + D+ + F+ A+ PA V + ++E Sbjct: 240 KDPSVDPVGACVGMKGTRVQAVVRELKGERIDIIPYSDDMSFFIAKALTPATVLKVGINE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 ++ T + VE L+ AIG+ GQNVRLAS+L+GW ++V++ + E A Sbjct: 300 NEKTAVVVVENDQLSLAIGKKGQNVRLASRLTGWSIDVLSESEYNQMKHKETERAFKE 357 >UniRef50_B2S4C9 N utilization substance protein A n=4 Tax=Treponema RepID=B2S4C9_TREPS Length = 485 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 133/468 (28%), Positives = 232/468 (49%), Gaps = 25/468 (5%) Query: 9 VEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEV 68 + + EK L + F+ +E L A K ++ + + V + + R VV+EV Sbjct: 9 IRKYAQEKGLDEDFAFKIVEQTLKAAYKTTFKTDENAVVTFGEER--VCIYARKRVVEEV 66 Query: 69 TQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVD 128 E+ L A D + +L V ++ES F R + Q A Q I + RE ++ + Sbjct: 67 YDRVSEVDLSTALELDPTTSLDSEVLVELESEDFKRGSVQAAVQRITELSREIQKDALYA 126 Query: 129 QFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRP 188 +++ EGEII G ++ ++I +DLG E ++ + LP++++R DR++ ++ VR Sbjct: 127 EYKSKEGEIIVGYYQRARNEHIYVDLGK-VEGLMPKSHQLPQDDYRQNDRIKSLVREVRK 185 Query: 189 EARGA--QLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRID 246 + + QL ++R+ + EL +EVPEI + ++E+ R+PG R KIAV + +D Sbjct: 186 HPKSSVVQLILSRTDSAFVKELLAVEVPEIYDGIVEVAKIVREPGYRTKIAVTSRRDDVD 245 Query: 247 PVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV-DEDKHTM 305 PVGACVG RG R++ V EL E+ID++ + +P F+ NA++PA+V ++VV DE+K + Sbjct: 246 PVGACVGPRGIRIRMVIKELNDEKIDVLEYSPDPVIFIKNALSPAEVLNVVVLDEEKRSA 305 Query: 306 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ------------AKHQAEAH 353 V L+ AIG+ G NVRLA++L W ++V T + + Sbjct: 306 LAIVAESQLSIAIGKQGLNVRLANRLVDWNIDVKTESQFEEMDVYTDTRRAAENLFDNDY 365 Query: 354 AAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA 413 F+ Y+ + +L + G ++ L + + L +EG+DE V+ L + Sbjct: 366 QEESEFSSYVGFTPELIKILQDNGIQDVQTLVDLGEEGLRALEGMDEAHVQELLAAIEEN 425 Query: 414 LATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAE 461 + + +E S+ + G D D A + GV D++E Sbjct: 426 FEVVEEGEEASVTSSPGT-------GGDEDQALQCPECGVRITTDMSE 466 >UniRef50_D1PLN7 Transcription termination factor NusA n=2 Tax=Clostridiales RepID=D1PLN7_9FIRM Length = 357 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 121/353 (34%), Positives = 203/353 (57%), Gaps = 4/353 (1%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYE-QEIDVRVQIDRKSGDFDTFR 60 N E + A+ E+ LP + + E +++A+ A KK YE ++ +V V ID + G F Sbjct: 5 NNEFFDALAALEKERGLPEDYLIEKIKAAIVIAVKKDYEVEDDNVVVDIDPEIGAFRASL 64 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V+EV P +++LE A+ +S +G + Q+++ F RI QTAK VI Q +RE Sbjct: 65 LRDIVEEVENPHTQVSLEEAQKVRKSYKVGQRMVTQLKTKEFGRIAAQTAKHVIRQGLRE 124 Query: 121 AERAMVVDQFREHEGEIITGVVKKVN--RDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 ER + + + E+IT V ++ R N+ LDLG AV+ R + +P E F G+ Sbjct: 125 GERNLQCSEMQSRAHELITATVVSIDPERGNVVLDLGKGGSAVLPRNEQVPGETFHEGET 184 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 V+ + V RG ++ ++R+ P ++ +F +EVPEI + +EIKA AR+ G+R K+AV Sbjct: 185 VQVYVVDVLATDRGPRVTISRTHPGLVKRMFELEVPEIYDGTVEIKAIAREAGARTKLAV 244 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 + + +DPVGAC+G RGARV+ + ELGGE+ID++ W ++ +F+ A++PA V + + Sbjct: 245 WSKNPDVDPVGACIGARGARVEKIVQELGGEKIDVIRWSEDITEFISAALSPAKVVKVEL 304 Query: 299 DE-DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA 350 + + + V L+ AIG GQNVRL + L+G+ +++ + + Sbjct: 305 LPGETKSCRVTVPDHQLSLAIGNKGQNVRLCAHLTGYNIDIRPESGYYGEDEE 357 >UniRef50_C1A8N6 Transcription elongation protein NusA n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8N6_GEMAT Length = 438 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 154/416 (37%), Positives = 238/416 (57%), Gaps = 11/416 (2%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 + +IL + +SN K + RE++ L+ + A KK+ + V+ID G+ Sbjct: 4 SADILTALRELSNLKQITREELHGLLQDGIHAALAKKHGANVQAEVEIDEARGEIRIVLL 63 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VVDEVT ++E+T+E AR+ D +GD +E ++ + F R Q AKQ I+Q+VRE Sbjct: 64 KTVVDEVTDESREVTVEEARFMDPEFQVGDVMEIPVDFMEFGRTAVQAAKQRIIQRVREG 123 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGN--NAEAVILREDMLPRENFRPGDRV 179 ER + D+F G++++G V+++ R + + L AEA+I + RE++ G+ V Sbjct: 124 ERTRIRDEFAGRVGDLLSGEVQQIERGKLVVMLNKFREAEAIIPYREQNHREHYHQGEPV 183 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R VL V +G +L ++RS + LF++EVPEI + ++EIKAAAR+ GSR KIAV Sbjct: 184 RAVLKRVEDTPKGPRLILSRSDALFVQALFKLEVPEIQQGIVEIKAAAREVGSRTKIAVT 243 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 + D+ +DPVGACVG++GARVQAV ELGGERIDIV W +P +F A+APA VA + D Sbjct: 244 SRDEAVDPVGACVGLKGARVQAVVNELGGERIDIVPWSPDPERFAKLALAPARVARVFSD 303 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKH---------QA 350 T+ V+ L+ AIGRNGQNVRLAS+L+GW++++ + + K Sbjct: 304 AASRTIQAVVDEDQLSLAIGRNGQNVRLASELTGWKIDLYSSREWLEKGGEAPLFAPLPE 363 Query: 351 EAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEAL 406 E A + ++ VL E G+ TL ++ + +LL + G+ + + Sbjct: 364 ETEEADVPLNEIEGLETATVAVLAEAGYRTLNDILDLDRDDLLRLPGIAPEEADRI 419 >UniRef50_B1GZN5 Transcription antitermination factor NusA n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZN5_UNCTG Length = 418 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 138/414 (33%), Positives = 246/414 (59%), Gaps = 2/414 (0%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+L +E + +K + +E I +E+AL +A KK + ++V +++ + G+ + Sbjct: 6 ELLIALEQIEKDKKIKKEDILVVIENALVSAYKKHVGKNVNVEAKVNPELGEMTASVVKV 65 Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 VV +V P EI ++ A+ D+S+ +G V +++ F RI QTAKQVIVQK+RE+ER Sbjct: 66 VVKDVVNPLLEICVQDAKKFDQSVEIGTEVRIPLDTRDFSRIAAQTAKQVIVQKIRESER 125 Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 + D+ +E G+I G + ++ N+ +DLG EA++ + + +E F G ++ V+ Sbjct: 126 DSLFDEMKEKIGQIANGAIYRITNRNLIVDLGK-TEAILPSSEQVFKEKFSVGQYIKAVI 184 Query: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 V +G+ + ++R+ E++ LF +EVPEI E+++EI R+PG R KI V +++ Sbjct: 185 IKVEKSVKGSGVVLSRTSIELVKRLFELEVPEIYEKIVEIVNVVREPGVRTKITVLSHNP 244 Query: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDK 302 ++DPVGACVG++GARV+ + EL GERID+V + +PA+++ +AM+PA + S+ + E++ Sbjct: 245 KVDPVGACVGVKGARVKPIIDELRGERIDLVSYSVDPAKYIASAMSPAKIVSVTTISEEE 304 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKY 362 ++ V L AIG+NG NVRLA++L+GW ++V + + + + F K Sbjct: 305 KKAEVLVTDDMLFLAIGKNGHNVRLAAKLTGWHIDVKSEGQKKQEGNERIEKQAEVFEKL 364 Query: 363 LDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 416 E +LV+ G + +E+L+ + + L+ + G+ T E + E AKN++ Sbjct: 365 EGFSERIIKMLVKAGITDVEKLSLLTTEYLITLPGIGHKTAEKIIEVAKNSIRK 418 >UniRef50_C3RL60 Transcription termination-antitermination factor n=6 Tax=Bacteria RepID=C3RL60_9MOLU Length = 443 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 119/378 (31%), Positives = 216/378 (57%), Gaps = 5/378 (1%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKY-EQEIDVRVQIDRKSGDFDTFR 60 +K+ + + + EK + ++ E L+ ++ A KK Y + +VRV+I+ K+G F F Sbjct: 3 SKKFMDALNLLIEEKGIEKDVFLEMLKESIGKAYKKNYLNPDANVRVEINEKTGKFRLFE 62 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVD++ E++LE A+ + + +GD VE + + R+ KQ+ QK+RE Sbjct: 63 LRTVVDDLDDEDIELSLEEAQAINPNYQIGDVVETEADIEHIGRLAAIQTKQLFRQKIRE 122 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + ++F + + +IITG+V +V +++G A + +P E G ++ Sbjct: 123 TEKETLYNEFADKKDDIITGIVDRVEDKFAIVNIGKTG-AFLASNQQIPGEKLNEGQHLK 181 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V +G + V+R++P + LF +EVPE+ + +EIKA +R+PG R+K+AV T Sbjct: 182 VYVSDVDRGTKGTHIVVSRTEPSFVKRLFELEVPEVYDGTVEIKAVSREPGERSKVAVYT 241 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 +++ IDP+G+CVG +G+RV+ V EL GE IDI+LW +P F+ NA++P+DV + ++E Sbjct: 242 SNENIDPIGSCVGPKGSRVKNVVDELNGEMIDIILWSSDPVVFISNALSPSDVKWVSINE 301 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + H+ + V L+ AIG+ GQN RLA +L+GW++++ +V + + +T Sbjct: 302 ENHSALVVVPDDQLSLAIGKRGQNARLAVRLTGWKIDIKSVSEAVELGLIDLQTVNNTEE 361 Query: 361 KYL---DIDEDFATVLVE 375 +E+FA +++ Sbjct: 362 SSPVDASFEEEFAQEMLD 379 >UniRef50_P48514 Transcription elongation protein nusA n=8 Tax=Deinococci RepID=NUSA_THET8 Length = 387 Score = 409 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 129/353 (36%), Positives = 214/353 (60%), Gaps = 12/353 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKY----------EQEIDVRVQID 50 MN+E + ++ ++ E+ + E+I EA + AL A K+ + +V V ID Sbjct: 1 MNREFVEAMQHLALERGVSVEEILEAFKEALRKAYIKRQKGYKKEEIDQGKGPEVDVYID 60 Query: 51 RKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTA 110 SG + VV++V P KEI L A D + +GD +E I R+ Q Sbjct: 61 PNSGRIEMVEVRRVVEKVEDPDKEIALAEALQYDPEVQVGDEMEFPINPEELSRMAIQDL 120 Query: 111 KQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVN-RDNISLDLGNNAEAVILREDMLP 169 +Q++ Q+++E+ER + +++++ EG+++TGVV +V+ R N+ ++LG EA + R + +P Sbjct: 121 RQILTQRLKESERNRIYNEYKDKEGQVLTGVVTRVDNRGNVFVELGRG-EAYLPRSEQIP 179 Query: 170 RENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARD 229 E + PG R++ L V A+G L V+R+ ++L L + EVPEI E ++EIKA AR+ Sbjct: 180 TEKYHPGQRIKVYLKKVDKSAKGPSLLVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIARE 239 Query: 230 PGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMA 289 PG R+K+AV +++ +DP+GAC+G +G R+QAVS ELG E++DI+LW +P +F+ NA++ Sbjct: 240 PGRRSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWSKDPKEFIRNALS 299 Query: 290 PADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 PA V SI +D + + V + AIG GQNVRLAS+L+G++++ + Sbjct: 300 PAQVGSIELDPEAKKARVKVTKDQHSLAIGTGGQNVRLASKLTGYDIHFEEAE 352 >UniRef50_B2GBN4 Transcription termination-antitermination factor NusA n=10 Tax=Lactobacillus RepID=B2GBN4_LACF3 Length = 408 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 227/388 (58%), Gaps = 24/388 (6%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEI-DVRVQIDRKSGDFDTFRRW 62 E+L ++ + EK + +E I EAL+ ALA A +K YE +V V+I ++G+F + Sbjct: 9 ELLDAMDILEKEKGIKKEVIIEALKDALANAYQKNYEDNAANVEVEISDRTGEFKVYAAK 68 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 VV+EVT +EI+L A + LGD ++++ F R+ QTAK V++QK+R+ E Sbjct: 69 TVVEEVTNDVEEISLADALRVNRGYELGDIFKEEVTPRNFGRLAAQTAKSVVLQKLRDEE 128 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 R ++ D++ + + +++ G V + + I ++LG+ EA + + D +P E++R DR++ Sbjct: 129 RNIIFDKYNKLKDDLVEGEVSREDERYIYVNLGDGVEAAMNKHDQMPNEHYRVHDRIQVY 188 Query: 183 LYSVRPEA--RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V ++ RG +FV+R+ P++L LF EVPEI + ++E+K R+ G RAK+AV + Sbjct: 189 VTRVNDKSGARGPLVFVSRTSPDLLKRLFEKEVPEIQQGIVEVKGIVREAGDRAKVAVFS 248 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D+ +DPVG CVG RG RVQA+ +LGGE IDIV +++ P +F+ NA+ PA+V ++ DE Sbjct: 249 RDENVDPVGTCVGPRGTRVQAIVNQLGGENIDIVKYEEAPEEFIRNALNPAEVEGVLFDE 308 Query: 301 DKHTMD---------------------IAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 + +D + V L+ AIG+ GQNVRLA+QL+G+++++ Sbjct: 309 NNGEVDEPASVDENGREHEERIHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKIDIK 368 Query: 340 TVDDLQAKHQAEAHAAIDTFTKYLDIDE 367 + A +A+ A + + E Sbjct: 369 SSSQAAALEEAQPEPAAEVVEQPTQAPE 396 >UniRef50_A8SMZ8 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMZ8_9FIRM Length = 378 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 224/347 (64%), Gaps = 1/347 (0%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 + L ++ + EK + +E IF++LE AL + +K + + +V++ I+R +G + F Sbjct: 13 DFLRALDEIEREKGVSKEIIFDSLEKALLKSYEKNFGEYENVKININRTTGKVELFAIKT 72 Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 VV+ V EI+L+ A+ +LGD V +++++ F R+ QTA+ +++QK+++AER Sbjct: 73 VVEVVEDNITEISLDDAKAISTKYSLGDEVSIKLKTMDFGRVAAQTARNIVIQKIKDAER 132 Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 ++ + F++ E E+I+G +++++R+N+ ++LG EA++ + + E +R G+R++ + Sbjct: 133 EVIYNDFQDKERELISGQIQRIDRNNLFINLGK-LEAIVTPPEQIKSEVYRVGERLKFYV 191 Query: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 V+ +GAQ+ ++RS +++LF +EVPEI + +EI++ AR+PGSR KIAV + + Sbjct: 192 KEVKNTPKGAQVLLSRSDVNFVLKLFELEVPEILDGTVEIQSIAREPGSRTKIAVFSKND 251 Query: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 +DPVGACVG + +RV ++ EL GE+IDI+++ N +++ N+++P++V ++ +E ++ Sbjct: 252 DVDPVGACVGYKRSRVSSIIKELKGEKIDIIVYSKNVKEYLSNSLSPSEVIAVFTNESEN 311 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA 350 I V L+ AIG+ GQN RLA++L+ W +++ ++ + + Sbjct: 312 RARIIVPDSQLSLAIGKEGQNARLAAKLTNWRIDIKGLEKYKEDIEN 358 >UniRef50_C2ES49 Transcription termination factor NusA n=1 Tax=Lactobacillus vaginalis ATCC 49540 RepID=C2ES49_9LACO Length = 410 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 125/400 (31%), Positives = 212/400 (53%), Gaps = 47/400 (11%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N E++A ++ + EK + +E + EALE AL A K+ Y E +V V D +G+ + Sbjct: 7 NTEMIAALDYLEKEKGIKKEIVIEALEQALELAYKQNYG-EKNVEVDFDGVTGNIKVYAV 65 Query: 62 WLVVDEV----TQPTKEITLEAARYE--DESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 + D + ++L AR + ++GD + +++ F RI QTAKQV++ Sbjct: 66 KTITDNEDLVEEDDNEYMSLADARKLPHGQGYDVGDEIREEVTPRDFGRIAAQTAKQVVM 125 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRP 175 Q++RE ER ++ ++++ +E EIITG V + ++ +DLG+ E + D +P E++ Sbjct: 126 QRLREEERKIIYNKYKTYENEIITGEVSREDKRFTWVDLGDGVEGAMGYRDKMPNEHYHI 185 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 DR++ + V + G Q+FV+R+ PE+L LF EVPEI + + I+ AR+ G RAK Sbjct: 186 HDRIQVYVSKVNDDRHGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 +AV +ND +DPVG CVG RG+RVQA+ EL GE +DIV + +PAQF+ NA+ PA+V Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAQFIANALNPAEVLD 305 Query: 296 IVVDE----------------------------------------DKHTMDIAVEAGNLA 315 ++ +E ++ + + V L+ Sbjct: 306 VIFNEPEAPVTEEQPEENSTDDSVTETSDTSTEAESTEEEPVATTEERSCTVVVPDSQLS 365 Query: 316 QAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA 355 AIG+ GQN RLA++L+ +++++ +++ Sbjct: 366 LAIGKRGQNARLAARLTKYKIDIKPASEMEDNTDTLEEET 405 >UniRef50_D2R7W7 NusA antitermination factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7W7_9PLAN Length = 404 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 142/422 (33%), Positives = 237/422 (56%), Gaps = 38/422 (9%) Query: 1 MN-KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTF 59 MN ++L +V+++ EK + ++ +F+A+E+AL +A KK Y D+ + IDR +G Sbjct: 1 MNPADMLRIVDSLHREKNIDKDVVFQAIEAALVSAAKKHYGDAADITINIDRNTGALS-- 58 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 + + D RI QTAKQVI+QK+R Sbjct: 59 ----------------GIADGQALDPE-------------EISGRIGAQTAKQVIIQKIR 89 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 EAER ++ ++ + G++I GVV + + LG EA++ R + +P E P +RV Sbjct: 90 EAERDSLLGEYGDQIGQLINGVVTRSEGAATIVSLG-TIEAILPRSEQIPGETHHPNERV 148 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R +++ V+P+ ++ ++R++P+ + LF E+PEI + VI + A AR+P R+K+AV Sbjct: 149 RAIVFEVKPQGSRVKVVLSRTRPQFVQRLFEQEIPEIADGVISVNAIAREPAHRSKVAVS 208 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 + D+R+D VGACVG+RG R++ + EL GERIDIV W D+ + ++ PA+V +++ Sbjct: 209 STDQRVDCVGACVGVRGNRIKNIVDELSGERIDIVRWSDDAETLIRASLQPAEVDQVLLC 268 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTF 359 + + V L+ AIGR GQNVRLAS+L GW++ +MT D+L+ + A+ F Sbjct: 269 DMIGRAIVLVREDQLSLAIGRKGQNVRLASKLCGWDIEIMTNDELEQ----QIDRAVGGF 324 Query: 360 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQ 419 +K + E+ A LVE+G+ + ++L+ + L+E+ GL E VE + +A LAT A+ Sbjct: 325 SKIEGVTEELAQRLVEQGYLSYDDLSVIEPDALMEMGGLTEEQVEEIVNQA-ETLATDAE 383 Query: 420 AQ 421 Sbjct: 384 RA 385 >UniRef50_Q3Z7U1 N utilization substance protein A n=5 Tax=Dehalococcoides RepID=Q3Z7U1_DEHE1 Length = 491 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 126/371 (33%), Positives = 212/371 (57%), Gaps = 3/371 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKK-YEQEIDVRVQIDRKSGDFDTF 59 M + L + +S EK LP+E + +ESAL +A +K+ + ++ V+ID+ +G Sbjct: 1 MKSDFLLAITQLSAEKNLPKEVVLATVESALVSAYRKESFAPNQNIAVKIDQLTGKVKVM 60 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 LVV++VT +E+ L A+ +GD + + RI QTAKQVI+Q++ Sbjct: 61 AEKLVVEKVTDSRQEMRLLEAKRLKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLH 120 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 EAE + D++ G+ + GVV+++ I++D+G EA++ + E +R G R+ Sbjct: 121 EAENTAIFDEYASKAGDTLVGVVQRIEPKQITVDIGR-VEAIMPASEQAYGERYRAGQRI 179 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 + + V A+G + V+RS P ++ LF +EVPE+ +++EIKA AR+ GSR+K+AV Sbjct: 180 KVYVVDVAKTAKGPAVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVG 239 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 IDPVG CVG+RG R+Q + +EL GE+ID+V WD A F+ N+++PA V ++++ Sbjct: 240 ALQPGIDPVGCCVGLRGIRIQNIVSELNGEKIDVVAWDSEIANFIANSLSPAQVTKVILN 299 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTF 359 E + + + + L+ IG+ GQNVRLA +L+GW +++ + D + + E Sbjct: 300 EAEKSAIVVIPDRQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEEVERAEETARKQGE- 358 Query: 360 TKYLDIDEDFA 370 T+ I E Sbjct: 359 TEKPAITEKVI 369 >UniRef50_C1TMK5 Transcription termination factor NusA n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMK5_9BACT Length = 366 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 126/361 (34%), Positives = 214/361 (59%), Gaps = 4/361 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 + + + + ++ E+ L + I ++E+ALA+A KK E+ ++ V+ID ++GD Sbjct: 3 LGSDFIRALMQLTEERNLSQSIILGSIEAALASAYKKYKEKNLEPEVKIDGETGDISIME 62 Query: 61 RWLVVDEVTQPTKEITLEAARYED-ESLNLGDYVEDQIE--SVTFDRITTQTAKQVIVQK 117 VVDEV E+T E A L GD V+ ++E +F RI QTA+QVI+Q+ Sbjct: 63 IRRVVDEVKNSDAELTSEEAAALGFPGLVEGDVVKTEVEIAPESFGRIAAQTARQVIIQR 122 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 +++AER ++ ++F E G+++ GVV K D I + + EA++ RE+ + E + G Sbjct: 123 LKDAEREIIFNEFSERVGDMVNGVVFKAENDQILVRISERTEAMLPREERINGETYELGS 182 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 R++ L VR RG ++ V+R+ P +L L +E+PEI + V+EI R+ G+RAK+A Sbjct: 183 RMKFYLLDVRQTTRGPRIVVSRTHPGLLRRLMELEIPEIRDGVVEIHGIVREAGARAKVA 242 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V T D +DPVGACVG G+R++ +S EL GE+ID+V+W D+P Q++ N ++PA V + Sbjct: 243 VTTLDPNVDPVGACVGNGGSRIKTISNELNGEKIDVVIWSDDPLQYIRNTLSPAKVVRVE 302 Query: 298 -VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356 + E + + + L+ AIG+ GQNVRLA++L+GW++++ ++ + Sbjct: 303 PILEQEKSAKVFARPDQLSLAIGKAGQNVRLAARLTGWKVDINPLEAPEKDSMPTLQDLF 362 Query: 357 D 357 + Sbjct: 363 E 363 >UniRef50_C7RGN8 NusA antitermination factor n=7 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RGN8_ANAPD Length = 433 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 125/372 (33%), Positives = 228/372 (61%), Gaps = 5/372 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN + + ++ + EK L + I +AL+ AL + +K Y+ E +V V ID ++G + F Sbjct: 1 MNNDFMLALDELCKEKNLDKATILDALQKALIKSYQKNYDNEENVDVIIDEETGQIEVFA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVDEV EI+L+ A E+ S +LGD ++ F R+ QTA+ +++QK+R+ Sbjct: 61 LKEVVDEVDDTITEISLKDALEENSSYHLGDIARIKLTPKNFGRVAAQTARNIVIQKIRD 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 A+R + ++ E E+ITG +++ ++ N+ ++L + E V+ ++ +P E + +++ Sbjct: 121 AQRDSLYGEYIERANEMITGTIQRQDKYNVYVNL-DKIEGVVPIKEQVPTEEYPANAKMK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 ++ VR ++ Q+ ++RS +++ LF +EVPEI + +IEI + AR+ GSR K+AV + Sbjct: 180 FLIKEVRNSSKEPQIVLSRSSQDLITRLFELEVPEITDGIIEIYSLAREAGSRTKMAVFS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ND+ ID VGAC+G +G RV ++ EL GE+IDI+ +D + F+ NA++PAD+ ++V+E Sbjct: 240 NDEGIDAVGACIGFKGIRVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIEVLVNE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + V + L+ AIG+ GQN RLA++L+GW++++ + ++ ++ Q E + Sbjct: 300 KSKKSLVVVSSDQLSLAIGKEGQNARLAARLTGWKIDIKSSEEYESLSQEEIDEILG--- 356 Query: 361 KYLDIDEDFATV 372 +IDE+ + V Sbjct: 357 -LNEIDEEASEV 367 >UniRef50_A8F3W1 NusA antitermination factor n=12 Tax=Thermotogaceae RepID=A8F3W1_THELT Length = 344 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 121/342 (35%), Positives = 209/342 (61%), Gaps = 2/342 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN +L ++ + EK + +++I E LE AL +A KK + +V V+IDR +GD F+ Sbjct: 1 MNLGLLDALDQLEEEKGISKDEIIEILEKALVSAYKKNFGTAKNVDVKIDRMTGDIQLFQ 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + VV+EV P ++++E AR D G + +I F RI QTAKQV++Q++RE Sbjct: 61 VFDVVEEVEDPLTQMSVEEARKADPLAESGKKIFKKISVKNFGRIAAQTAKQVLIQRIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + + G +IT V +V D + +G E + + + + E+ G+ ++ Sbjct: 121 LEKERQYEHYSTLAGSVITVEVIRVTSDWADIRVGK-IETRLPKREWISGESISAGELIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + SV + +G ++ V+R+ PE + L ++E+PEI ++++IKA R+PG R K+AV + Sbjct: 180 VYVQSVVKDKKGPKIMVSRAVPEFVAGLLKLEIPEIENDIVQIKAIVREPGVRTKVAVVS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVD 299 + ++DPVGAC+G G+R+ A+ EL GE++DI W D+P Q ++NA+APA V S+ ++D Sbjct: 240 TNPQVDPVGACIGEGGSRISAILRELKGEKVDIFRWTDDPRQLIVNALAPASVTSVEILD 299 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 ++ + + V L+ AIG+ GQN RLA++L+GW++++ V Sbjct: 300 FERKAVRVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPV 341 >UniRef50_UPI0001C31DB6 NusA antitermination factor n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31DB6 Length = 503 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 136/434 (31%), Positives = 225/434 (51%), Gaps = 29/434 (6%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KEIL V ++ EK + EK+ ALE AL +A KK+ +V++DR+ GDF + Sbjct: 1 MSKEILDAVRGLAAEKNISSEKLMVALEDALLSAYKKQPGAAPYAQVEMDRELGDFTVWE 60 Query: 61 RWL---VVDEVTQPTKEITLEAARYEDES-----------------LNLGDYVE-DQIES 99 + + D++ +EI D D +E + Sbjct: 61 LKIPEDLEDQLITEQEEIIAAEFSGVDPETGEARELPEPELDFEKLAEYEDQIERVDVTP 120 Query: 100 VTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAE 159 F RI QTAKQVI+Q++REAER M+ +++R+ GE+ITG+V++ + + L E Sbjct: 121 EDFGRIAAQTAKQVILQRIREAERDMMFEEYRDRVGELITGIVQQSDSRYTLVQLRERVE 180 Query: 160 AVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEE 219 A++ + + + E + R++ V+ V +G + V+R PE++ LF +EVPEI + Sbjct: 181 ALLPKSEQVDGERYDHSQRIKAVIKDVSASTKGPSIIVSRRDPELIKALFELEVPEIADG 240 Query: 220 VIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDN 279 ++EI AR+PG R+KIAV ++ +DPVGACVG RG+RV+ V +EL GE+IDI+ ++D Sbjct: 241 LVEITNVAREPGYRSKIAVVSHADGVDPVGACVGPRGSRVRMVVSELRGEKIDIIPYNDE 300 Query: 280 PAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 PA+FV A++PA V ++VD+D + V L+ AIGR GQN RLA++L+GW +++ Sbjct: 301 PARFVAKALSPARVREVLVDDDGKQATVIVPDDQLSLAIGREGQNARLAARLTGWRIDIR 360 Query: 340 TVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEE--------GFSTLEELAYVPMKE 391 + + ++ + + G T + L+ + E Sbjct: 361 SETEFASEEAEGGYEEEEVQGGRCAAITLNGRRCPNAALPGSRYCGLETHQALSEIDSDE 420 Query: 392 LLEIEGLDEPTVEA 405 + + G + Sbjct: 421 VAALSGGGTAVADD 434 >UniRef50_B0B9K5 N utilization substance protein A n=16 Tax=Chlamydiales RepID=B0B9K5_CHLT2 Length = 434 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 144/453 (31%), Positives = 237/453 (52%), Gaps = 38/453 (8%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNK+++A+ + + EK + R I A+ESAL A KK + +V V I+ ++GD + F Sbjct: 1 MNKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFC 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V++ P+KEI L+ AR D +G Y++ S F RI A+Q+I QK+R Sbjct: 61 EKQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRH 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRD-NISLDLGNNAEAVILREDMLPRENFRPGDRV 179 AER ++ +++R + EII+GVVK R N+ +DLG E ++ E + GD++ Sbjct: 121 AERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGK-VEGLLPARFYPKTEKHKVGDKI 179 Query: 180 RGVLYSVRP-EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 +LY V+ E GA++ ++RS PE + +LF EVPE+ E +EI AR+ G R K+AV Sbjct: 180 YALLYEVQESENGGAEVILSRSHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAV 239 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 +++D + D VGA VGMRG+R++ + EL E+ID+V + + + N + P ++ I + Sbjct: 240 RSSDPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAI 299 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 ED + I V+ + A IG+ G N RL SQ+ G+EL V + + Sbjct: 300 LEDDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRMSEY-------------- 345 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418 L+E L E + + LE+EG++ V+ L + + I Sbjct: 346 ------------NKLLEIQRLQLAEFEDPRLDQPLEVEGINTLIVQNLEHAGYDTIRKIL 393 Query: 419 QAQEESLGDNKPADDLLNLEGVDRDLAFKLAAR 451 A A +L ++ G+ +LA+K+ + Sbjct: 394 LAS---------ASELASVPGISLELAYKILEQ 417 >UniRef50_A6CF45 Transcription elongation factor NusA n=3 Tax=Planctomycetaceae RepID=A6CF45_9PLAN Length = 494 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 136/409 (33%), Positives = 227/409 (55%), Gaps = 33/409 (8%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 KE+L +V+A+ +K++ +E +F +E A+ +A ++ + + ++ V IDR +G+ Sbjct: 3 GKEVLRIVDAIQRDKSIDKEIVFGGIEQAILSAARRHFGDDHELSVDIDRDTGEPTVLCD 62 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 GD + I R+ QTAKQV++QK+REA Sbjct: 63 ----------------------------GDKLGKDILGEILGRVAAQTAKQVMIQKIREA 94 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER V D++ E + + ++G V +V + ++LG E ++ R + +P E+FR DRVR Sbjct: 95 ERDTVFDEYMEMQYQSVSGTVSRVEGGAVLVNLGK-IEGILPRGEQIPGESFRVNDRVRA 153 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 V+ VR ++ ++R+ P+M+ LF +E+PE+ + +I++++ AR+ G R+K+AV Sbjct: 154 VVLDVRKAGSRVKVILSRTHPDMVRRLFELEIPEVADRIIDVRSLAREAGYRSKVAVSCI 213 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D ID VGACVGMRGAR++ + EL GERIDIV W+D+ V N++ PA+V +++ Sbjct: 214 DSSIDCVGACVGMRGARIKNIVDELAGERIDIVRWNDSLQVLVPNSLQPAEVEDVILCPM 273 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 + + V L AIGR GQNVRLAS+L GW++ VMT +L + ++ F+ Sbjct: 274 LGRVIVLVRDDQLPLAIGRKGQNVRLASKLVGWDIEVMTQTEL----DEQLDKTVEAFSS 329 Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 410 + E+ A LV +GF + +L+ + +L E+ GL E + E A Sbjct: 330 IPGVSEELAESLVSQGFFSYYDLSVIEPDQLAELGGLTAEQCEQIVEVA 378 >UniRef50_D2QL25 NusA antitermination factor n=14 Tax=Bacteria RepID=D2QL25_9SPHI Length = 414 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 119/414 (28%), Positives = 224/414 (54%), Gaps = 8/414 (1%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 ++ + K + R + LE T +KKY + + V I+ +SGD + +R + Sbjct: 6 LIESFADFARSKNIDRPTMIAILEDVFRTMIRKKYGTDENFDVIINAESGDLEMWRTREI 65 Query: 65 VDEVTQPT---KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VD+ ++ +I L AR + +G+ V ++++ F R QTA+Q ++QK+++ Sbjct: 66 VDDNSEDIWDYDKIPLAEARKIQDDFEVGEQVAEEVKLDDFGRRVVQTARQTLIQKIKDM 125 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E+ ++ ++++ G+++T V ++ + I L G + E + R + + ++ +R G+ V+ Sbjct: 126 EKELLYQKYKDQVGDLVTAEVYQLLKHEIILVDGESNELSLPRTEQISKDRYRKGEPVKA 185 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 V+ V ++ ++R+ P L LF IEVPEI + +I I+ R+PG RAK+AV++ Sbjct: 186 VISRVDMLNGTPKIVLSRTSPVFLERLFEIEVPEIYDGLISIRKIVREPGERAKVAVESY 245 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D RIDPVGACVGM+G+R+ + ELG E ID++ + +N + A++PA ++S+ +D + Sbjct: 246 DDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTENLELLISRALSPAKISSMQIDRE 305 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 + + ++ ++ AIG+ GQN++LA +L E++V ++ Q E +D Sbjct: 306 TKRVSVFLKPDQVSLAIGKGGQNIKLAGRLVDMEIDVFRDNEGQ-----EDDEDVDLMEF 360 Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALA 415 +IDE L + G T + + + +EL+ L+E TVE + K Sbjct: 361 SDEIDEWMIQELRKVGLDTAKSVLALNKEELVRRTDLEEDTVEEILNILKQEFE 414 >UniRef50_A3CQ21 N utilization substance protein A, putative n=42 Tax=Streptococcus RepID=A3CQ21_STRSV Length = 420 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 130/421 (30%), Positives = 228/421 (54%), Gaps = 19/421 (4%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE+L + +K + +E I +A+ +L +A +++Y Q ++ D KSGDF + Sbjct: 3 MSKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYT 62 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVDEV EI+L+ A + LGD ++ + F R+ Q+AKQ I++K+R+ Sbjct: 63 VREVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRK 122 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 RA+ + ++EHE EI++G V++ + I ++LG + EA + ++D +P E F DR+ Sbjct: 123 QTRAITYNTYKEHENEIMSGTVERFDNRFIYVNLG-SIEAQLSKQDQIPGEVFASHDRIE 181 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +Y V RG +FV+RS PEM+ L E+PE+ + +EI + +R+ G R K+AV++ Sbjct: 182 VFVYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRS 241 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGG--------------ERIDIVLWDDNPAQFVIN 286 ++ +D +G VG GA ++ ++++ E ID++ W +PA+F+ N Sbjct: 242 HNPNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYN 301 Query: 287 AMAPADVASIVVD-EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ 345 A+APA+V ++ + ED + V L+ AIGR GQNVRLA+ L+G+ +++ + + + Sbjct: 302 AIAPAEVDQVIFNEEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFE 361 Query: 346 AKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEA 405 A+ + +I D A + E + + + +LE GL E E Sbjct: 362 E--MEAANELGGFAQEAEEILADAAILETEVSGAEATDFDAAAEETVLETAGL-ESEAEE 418 Query: 406 L 406 L Sbjct: 419 L 419 >UniRef50_Q7URQ7 N utilization substance protein A n=1 Tax=Rhodopirellula baltica RepID=Q7URQ7_RHOBA Length = 498 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 141/408 (34%), Positives = 239/408 (58%), Gaps = 39/408 (9%) Query: 1 MN-KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTF 59 MN ++IL V+++ +K + E +F+A+ESAL +A KK+Y +E DV V I R +G Sbjct: 1 MNPQDILRYVDSLHRDKNIDPELLFQAIESALQSAAKKQYGEESDVIVSISRDNGAIAA- 59 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 TL + + RI QTAKQVI+QKVR Sbjct: 60 ----------------TLA---------------GEPLGDDQIGRIGAQTAKQVIIQKVR 88 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 EAER ++ ++R+ GEI++G++ + + +++LGN EA++ R + +P E+ +RV Sbjct: 89 EAERDALMLEYRDQIGEIVSGMIGRADGGVATVNLGN-VEAILPRSEQIPGESLHANERV 147 Query: 180 RGVLYSVRPEA-RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 R +++ VRP ++ ++R++P+ + LF E+PE+ + VI IK+ +R+PG R+K+AV Sbjct: 148 RAIVFEVRPSGGNRVRVVLSRTRPQFVQRLFEQEIPELNDGVIAIKSISREPGYRSKVAV 207 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 + D++IDP+ CVG RG+R++AV EL GE ID+V +D +P + NA+ PA+V +++ Sbjct: 208 SSEDQQIDPISVCVGYRGSRIKAVREELAGEHIDVVRYDSDPEVLIPNALQPAEVDQVLL 267 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 + + V+ L+ AIGR GQNVRLAS+L GW++ +MT +L+ + A+ Sbjct: 268 CDMIGRAIVLVQEDQLSLAIGRRGQNVRLASKLCGWDIEIMTNAELE----EQIERAVGG 323 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEAL 406 F++ I E+ A LVE+G+ + ++L+ + +E+ GL E V+ + Sbjct: 324 FSQIPGITEEIAQALVEQGYLSYDDLSVIEPDLFMEMSGLSEADVDRI 371 >UniRef50_Q1AW56 NusA antitermination factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AW56_RUBXD Length = 381 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 113/344 (32%), Positives = 188/344 (54%), Gaps = 31/344 (9%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN +L+ + + EK +P E + LE +L A +++ V +DR++GD Sbjct: 1 MNTALLSALHEIETEKGIPFETVKRVLEESLLAAYREREGAVEGAEVVLDRETGDLR--- 57 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V + ++IT E F RI +Q +Q++ E Sbjct: 58 -------VMKDGEDITPED--------------------FDFTRIAASLMRQNFMQRLNE 90 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 +V ++ E G+++TG+V++ +R +DLG EA++ + +P E + G R++ Sbjct: 91 VHNQQLVKEYGERIGDVVTGIVQQAHRRMTIIDLGR-VEALLPASEQVPGERYENGQRLK 149 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 L ++ RG + V+R +L LF +EVPEI + ++EIKA AR+ G R+K+AV + Sbjct: 150 VYLLDIKEAGRGPSIIVSRRHEGLLRGLFELEVPEIYDGLVEIKAVAREAGLRSKVAVWS 209 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 N+ IDPVGACVG RG+RV+AV +EL E+IDI+ WD +PA+F+ A++PA V + +DE Sbjct: 210 NEPGIDPVGACVGPRGSRVRAVVSELRNEKIDIIQWDPDPARFIAKALSPARVREVYLDE 269 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDL 344 ++ ++ V L+ AIGR GQN RLA +L+ W++++ Sbjct: 270 EEKQAEVIVPDDQLSLAIGREGQNARLAVKLTDWKIDIKPESQA 313 >UniRef50_C0QTL7 Transcription termination factor NusA n=2 Tax=Hydrogenothermaceae RepID=C0QTL7_PERMH Length = 374 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 134/374 (35%), Positives = 214/374 (57%), Gaps = 20/374 (5%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M ++ V+EAV+ EK +P E I +AL + A KK+Y + +V+V D+++ + Sbjct: 1 MAVKLKNVIEAVAKEKNVPEEIIEKALIDGITAAVKKEYGYKDNVQVIFDKEADELKVLL 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + V V P ++I+LE A+ D +G YV + RI AK+VI KV Sbjct: 61 KKRVTPFVENPKRDISLEEAKKIDPKAEVGSYVFVPLNLEELGRIALNAAKEVITHKVAR 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ ++ +F+E EG+I+TG V++ +I +DLG EAV+ E+ + +E +R GDR+R Sbjct: 121 VEKNILFKEFKELEGKIVTGTVRRFEDGDIIVDLGR-IEAVLPEEEQIKKEKYRVGDRIR 179 Query: 181 GVLYSVRPEAR-------------------GAQLFVTRSKPEMLIELFRIEVPEIGEEVI 221 ++ V + + ++R+ P L +L IEVPEI E I Sbjct: 180 ALILKVIKDGSYPVYERGKVKRVIKPIDRDKPLVILSRTHPNFLRKLIEIEVPEIQEGEI 239 Query: 222 EIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPA 281 EIKA AR+PG RAK+AV T DK IDPVG VG++G+R+Q VS EL GE+ID++ WD +PA Sbjct: 240 EIKAIAREPGERAKVAVWTEDKNIDPVGVVVGLKGSRIQNVSAELSGEKIDVIEWDPDPA 299 Query: 282 QFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 QF++ A++P+ + ED+ +++AV L+ AIG+ G N +LA +L+GW +++++ Sbjct: 300 QFILRALSPSHPKKWRLLEDEKRIEVAVPKNELSLAIGKGGINAKLAHKLTGWHIDILSE 359 Query: 342 DDLQAKHQAEAHAA 355 +D + Q A Sbjct: 360 EDFERIQQLPRKTA 373 >UniRef50_C1QB15 Transcription termination factor NusA n=2 Tax=Brachyspira RepID=C1QB15_9SPIR Length = 498 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 134/459 (29%), Positives = 244/459 (53%), Gaps = 39/459 (8%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M + + ++ +S+EK + E + E + S + A KKKY +I+ + D K+ ++ Sbjct: 1 MFENVGTYLQQLSDEKDISVELLKEVIASTMELALKKKYGNDINFHIHFDNKNNP-TVYK 59 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIE-SVTFDRITTQTAKQVIVQKVR 119 VV+EV KEI+LE A+ D+ +NLGD V ++ F RI + AK QK+ Sbjct: 60 GANVVEEVRDKNKEISLEEAKKLDQDINLGDEVLILVDQVEAFGRIESMVAKTTFFQKIS 119 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 + E+ ++ ++F+ E +++ G ++ ++ I ++LG E + ++D PRE++ GDR+ Sbjct: 120 DLEKNIIYNEFKRRENQLVNGYFQREHKGTIYINLGK-TEGELQKKDQSPREHYTVGDRI 178 Query: 180 RGVLYSV---RPEARGA----QLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 232 R +Y V + + G ++ +TR+K + + +LF +E+PEI + IEIK R PG Sbjct: 179 RAYIYKVQGGKDDRTGKEIPTKILLTRTKADFIKKLFELEIPEIADGTIEIKNVVRQPGL 238 Query: 233 RAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPAD 292 + K+AV +N +DP+GAC+G +G R+Q++ E+ GE+ID+V W + +++ A+ PA Sbjct: 239 KIKVAVVSNKPEVDPIGACIGQKGIRIQSIIKEIEGEKIDVVKWSKDIREYIAEAITPAK 298 Query: 293 VASIVV-DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK---- 347 I++ D +K I + L+ A+G++G NV+LASQL+G+ ++ T D++ Sbjct: 299 PIRIIITDPEKKEAMIIIPDEQLSLALGKSGYNVKLASQLTGYYFDIKTETDIKENPELL 358 Query: 348 ------HQAEAHAAIDT------------------FTKYLDIDEDFATVLVEEGFSTLEE 383 +Q + A +T IDE L++ G +++EE Sbjct: 359 KDIVPLNQIFSDTAEETENSSEAEAAEAAEVFESNLYSLQGIDESIIKTLIDNGINSIEE 418 Query: 384 LAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQE 422 L + +E++E LD+ TV+ L K+ + + E Sbjct: 419 LYNLSAEEIMEKTNLDKDTVDNLMLVMKDVVEIVESEDE 457 >UniRef50_Q04GN3 Transcription elongation factor n=18 Tax=Lactobacillales RepID=Q04GN3_OENOB Length = 473 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 115/374 (30%), Positives = 216/374 (57%), Gaps = 6/374 (1%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 +E+ + ++A+ EK + +E +L+ L TA KK +E E +V V +D + +F+ + Sbjct: 7 RELFSALQALQAEKGISQEDAITSLKDTLVTAYKKNFEGETNVEVDVDPEKQEFNLLQIK 66 Query: 63 LVVDE--VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V+ + + P EI L+ AR + + GD ++ +I F R+ Q+ K Q +RE Sbjct: 67 EVIPDGDMIDPYSEIYLKDAREINSAYEAGDQIKFEINPRDFGRLAAQSGKNKSTQTIRE 126 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + ++ E EI++ V + ++ + + + + EA + +D +P E ++ GD ++ Sbjct: 127 KEKEAIHARYEGFEHEIVSARVAREDQRFLWVTMPDGQEAAMGDKDRIPGETYKTGDPIK 186 Query: 181 GVLYSVRPE-ARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 ++ V RG Q++V+R+ PE++ LF EVPE+ + + I++ AR+ G R+K+AV+ Sbjct: 187 VLINRVEDSATRGPQIYVSRTSPELVKRLFEQEVPEVYDGTVVIESIAREAGDRSKVAVR 246 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 T D +DP+G VG RG+RVQAV EL GE +DIV W ++ AQ++ NA+ PA+V ++ Sbjct: 247 TTDSNLDPIGTLVGTRGSRVQAVVNELHGENMDIVEWVEDEAQYIANALNPAEVVDVIFS 306 Query: 300 ED-KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 D + + + V L+ AIG+ GQN RLA++L+ +++++ + + QA++ + A ++ Sbjct: 307 PDNDNEVTVIVPDYQLSLAIGKRGQNARLAAKLTKFKIDIKS--ETQAENDPQLQAILEE 364 Query: 359 FTKYLDIDEDFATV 372 KY + ++ Sbjct: 365 SAKYAEEEDQSDET 378 >UniRef50_C7LXY2 NusA antitermination factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LXY2_ACIFD Length = 330 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 122/350 (34%), Positives = 192/350 (54%), Gaps = 25/350 (7%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N E++ +E ++ EK L E + E+L +ALA A K++ + V+ID SG Sbjct: 5 NPEVMDALEVIAREKGLSVETLLESLANALAAAYKRRPGAAEEAYVEIDPASGTIRVIC- 63 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 + DE+ + E + F RI Q AKQV++QK+REA Sbjct: 64 -------------------QELDENGTV--VREWEDTPRDFGRIAAQAAKQVMLQKIREA 102 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER +++ EG+++TG+V +++ LDLG EA++ + E + R++ Sbjct: 103 EREQKYEEYAGREGDVVTGIVSQIDPRFTLLDLGK-IEAIMPHSESPSNERYSVNQRLKA 161 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + VR +G Q+ V+R+ P ++ LF +EVPEI V+E+KA AR+PG R KIAV +N Sbjct: 162 YIVEVRRSIKGPQIVVSRTHPGLVRRLFEVEVPEIASGVVEVKAIAREPGHRTKIAVWSN 221 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D+ +DPVGACVG RG+RV V EL GE++DIV + ++ A+FV A+ PA S V + Sbjct: 222 DRSVDPVGACVGARGSRVHTVVNELLGEKVDIVPFSEDLAEFVERAIVPAHALSATV--E 279 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAE 351 + V L+ AIGR GQN RLA++L+G L + +++ + + + Sbjct: 280 GRDALVVVPDDQLSLAIGREGQNARLAARLTGTHLEIRPQSEVEGRQEGQ 329 >UniRef50_D1BJ68 Transcription termination factor NusA n=5 Tax=Actinomycetales RepID=D1BJ68_SANKS Length = 365 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 120/359 (33%), Positives = 200/359 (55%), Gaps = 7/359 (1%) Query: 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV- 64 ++ + + E+ + + + A+E ALA A ++ + RV+IDRKSG + R + Sbjct: 5 MSALRLLEREREISLDVLVSAIEQALALAYQRTPGAQRTARVEIDRKSGHVTVWAREDIE 64 Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYV-----EDQIESVTFDRITTQTAKQVIVQKVR 119 +E +P +A ED+ V E F RI T TA+QVI+Q++R Sbjct: 65 TEEPVEPRYSDGDDADGTEDDEAPTTRVVRTLGPEFDDTPTDFGRIATSTARQVIMQRLR 124 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 +AE V+ QFR+ EGE+++G++++ + L EAV+ + +P E + G+R+ Sbjct: 125 DAEDDQVLGQFRDKEGELVSGIIQQGRDPRVVLVDVGGTEAVLGAHEQVPTEKYTHGERL 184 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R + V +G Q+ ++R+ P ++ +LF +EVPE+ + +EI A AR+ G R K+AV+ Sbjct: 185 RSYVLDVSRGMKGPQISLSRTHPNLVRKLFEMEVPEVADGSVEIVAIAREAGHRTKMAVR 244 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VV 298 ++ GAC+G G+RV+AV EL E+IDIV W+D+PA FV +A++PA V S+ VV Sbjct: 245 ARVSGLNAKGACIGPMGSRVRAVMAELHDEKIDIVDWNDDPAAFVASALSPATVISVTVV 304 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357 D D + V L+ AIG+ GQN RLA++L+GW +++ + + + D Sbjct: 305 DADARAARVIVPDFQLSLAIGKEGQNARLAAKLTGWRIDIRSDGGGAEGSDDASTTSSD 363 >UniRef50_B0SH17 Transcription elongation factor n=6 Tax=Leptospira RepID=B0SH17_LEPBA Length = 466 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 121/456 (26%), Positives = 222/456 (48%), Gaps = 41/456 (8%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYE----QEIDVRVQI-DRKSGDFDTF 59 + ++ +K+L RE + + +L A +KK + +V+ + Sbjct: 12 LFEAIQQFCQDKSLDRELVLGVIRDSLLAAYRKKVGLEAETDDRCQVEFGSDNKNEIIIS 71 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 VV E T E++LE A+ D + +G + + R+ + AKQ++ Q++R Sbjct: 72 VLRDVVAEKTINPLEVSLEDAQKIDPKIEVGSQIRVFEKPQDLSRVLSSQAKQMVFQRLR 131 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 + E+ ++ +++ EGE+ G ++ +D +S+DLG E ++L++D P E +R GDR+ Sbjct: 132 DMEKELLYQEYKSKEGELTHGYFQRWKKDIMSIDLGK-VEGIMLKKDQNPGEKYRQGDRL 190 Query: 180 RGVLYSVRPEARGA--QLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 + ++ V R + ++R+ + + +LF +E+PE+ + ++EI+ AR P R K+ Sbjct: 191 KAIISRVELRPREPMPVITLSRASGDFVKKLFEMEIPEVYDGIVEIRDVARIPSYRTKVV 250 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V T+ +DPVGACVGM+G R+QA+ ELG ERIDIVL D P+ F+ NA++PA + Sbjct: 251 VTTSKSDVDPVGACVGMKGVRIQAIVRELGNERIDIVLHSDEPSIFIANAISPAKPVEVH 310 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKH--------- 348 VD + + V +L+ AIG NG NV+L SQLSG+++++ TV + Sbjct: 311 VDRKRGDALVIVPDESLSLAIGINGSNVKLVSQLSGFKIDIKTVSQYNQELASPEAREKL 370 Query: 349 ------------------------QAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEEL 384 + E + ++ + +L G +E L Sbjct: 371 DRLFNAQQEAMEESEDGYNQSGQDEEEEDSGFTPLSEIPGLTPRIVGLLEAGGIKNVETL 430 Query: 385 AYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420 +EL +I G+ + T E + + ++ + + Sbjct: 431 LEFSQEELSKISGIGKTTAEQILRLLRESIEWVEEG 466 >UniRef50_C7H125 Transcription termination factor NusA n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H125_9FIRM Length = 367 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 125/361 (34%), Positives = 206/361 (57%), Gaps = 2/361 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKEI+ + + E + ++++ + ++ ++ A K Y ++ VQID +G Sbjct: 1 MNKEIIEALGQIEKETGIAKDELIDMMKESVLHAFHKNYGEDSRAEVQIDEDTGGTYVIV 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V EV P E++L+ + DE G V+ +++ F RI QTAKQV +QK++E Sbjct: 61 SKDIVLEVENPETEVSLDEMKAIDERYEEGGVVQYTVDASKFGRIAAQTAKQVFLQKIKE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + +F+ EGEIITG V +V I + L N A+I + + E + GDR++ Sbjct: 121 REKQKIFSEFKGREGEIITGKVSRVTMRAIHVAL-NTTTAIIPLAEQIQGETYEVGDRIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + +V RG Q+ ++R P+ + ELF+ EVPEI ++I AR+ G+R KIAV + Sbjct: 180 ACIKTVEDRQRGPQIVLSRRSPQFVEELFKREVPEIENGTVKIMGIAREAGNRTKIAVYS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 +++ +D VGAC+G+RG R+ A+ +LG E++D+VLW+++P +FV A+ PA I++ E Sbjct: 240 DNEELDAVGACIGVRGTRIGAILDDLGYEKVDVVLWNEDPVKFVKEAIKPAFPDRIILLE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + + + V L+ AIGR GQNVRLAS+L ++V T D L+ ID Sbjct: 300 EDK-VIVIVADDELSLAIGRKGQNVRLASKLCKMSIDVKTKDGLKEMIDNGEITGIDFEE 358 Query: 361 K 361 + Sbjct: 359 E 359 >UniRef50_UPI00016C59C1 transcription elongation factor NusA n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C59C1 Length = 497 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 133/435 (30%), Positives = 222/435 (51%), Gaps = 37/435 (8%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 IL +V+ + E+ + ++ IF+ + SA+ A ++ ++ E V V ID +G Sbjct: 13 ILELVDKLHEERKIAKDVIFKGISSAIQVAAERHFQVEEGVFVSIDEATGHIV------- 65 Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 GD +++ +T RI Q+AKQ+I+QK+REAE Sbjct: 66 ----------------------AKYGD---QELDPITLGRIAAQSAKQMIIQKIREAESD 100 Query: 125 MVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLY 184 V +F + E++ G V +V+ + LG + EA++ R + +P E G+RV+ ++ Sbjct: 101 TVFTEFTGKKYELLVGTVTRVDAGTAIVSLGKS-EALLPRSEQIPGETHHVGERVKAIIM 159 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 244 VR + ++ ++R+ PE + LF E+PEI E +I+I+A AR+ G R+K+AV + D + Sbjct: 160 EVRKQGNRVKIVLSRAHPEFVKALFEEEIPEIDERIIDIRAVAREAGYRSKVAVTSIDMK 219 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHT 304 +D VGACVG+RG+R++ V EL GERIDIV W+D + NA+ PA ++ + Sbjct: 220 VDAVGACVGVRGSRIKNVIEELNGERIDIVRWNDALQVLIPNALQPAQISDVFTYPKLGR 279 Query: 305 MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLD 364 + V L+ AIGR GQNVRLAS+L GW++ +MT D+L A F + Sbjct: 280 AIVLVTDDQLSLAIGRRGQNVRLASKLVGWDIEIMTHDELA----EALERAERWFGQLPH 335 Query: 365 IDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEES 424 + L+EEGF + ++ + L E GL + + + A+ + ++ EE Sbjct: 336 ASPELTNALIEEGFLSYNDITMTDDEGLAEFTGLTQEAADEVVMYAEEYADVMERSVEEE 395 Query: 425 LGDNKPADDLLNLEG 439 + A L+ Sbjct: 396 RRQAELAAKEARLQE 410 >UniRef50_C6JIH8 Transcription elongation factor NusA n=2 Tax=Fusobacterium RepID=C6JIH8_FUSVA Length = 361 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 122/354 (34%), Positives = 210/354 (59%), Gaps = 2/354 (0%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 K L ++ + EK + +E + +E AL A KK + +E +V V+I+R++GD + Sbjct: 7 KVFLEALDELEREKGISKESLLLTVEQALLAAYKKNHGEEENVEVEINRETGDVKLYEVK 66 Query: 63 LVVD--EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV+ ++ EI+L+ A+ + +GD V +I F R Q KQ+++QKVRE Sbjct: 67 TVVETEDLYDAAIEISLDDAQEIKKRAKVGDIVRIEINCEEFRRNAIQNGKQIVIQKVRE 126 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER + D+F+E E +II G++++++ + EA++ + P + +R G+R++ Sbjct: 127 AERQYIYDRFKEKENDIINGIIRRIDEKKNIFVEFDGIEAILPTTEQSPADTYRVGERLK 186 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 L V + ++ ++R +L +LF +E+PEI +IEIKA AR+ GSRAK+AV + Sbjct: 187 VFLAEVEKTNKFPKIVISRKHEGLLKKLFELEIPEITSGLIEIKAVAREAGSRAKVAVYS 246 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 +D ID VGAC+G +G R++ + EL GE+IDIV+W ++ +FV ++PA V S+ V E Sbjct: 247 SDPNIDTVGACIGQKGLRIKNIVNELNGEKIDIVIWKESVEEFVSAVLSPAKVKSVEVIE 306 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 354 D++T + V+ L+ AIG+NGQN RLA++L+G +++ T + + + Sbjct: 307 DENTARVIVDNSQLSLAIGKNGQNARLAAKLTGMRVDIKTENSSKDDSLEGEQS 360 >UniRef50_Q2S1N6 N utilization substance protein A n=5 Tax=cellular organisms RepID=Q2S1N6_SALRD Length = 546 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 123/420 (29%), Positives = 219/420 (52%), Gaps = 13/420 (3%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 ++++++ ++ K + R+ + +E +K+Y + + + K GD Sbjct: 3 SEDLISSFGEIARSKDMDRDTLQIIVEDVFRAMLRKRYGSDEAFEIIFNPKQGDIQILHI 62 Query: 62 WLVVD--EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 VV EV P EI A+ D+ +GD V ++ F R TA+Q Q++R Sbjct: 63 QEVVGDWEVEDPVTEIKESEAKKIDDGFAVGDEVAGGLDVSEFGRRAVMTARQTFRQRIR 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 + E+ V ++ E G+I+ G + +V R L + + E V+ R++ +P +++R G+ + Sbjct: 123 DIEKEQVYQEYTELIGDIVVGEIYQVRRHETLL-MHEDTELVLPRDEQIPGDHYRKGNML 181 Query: 180 RGVLYSVRPEA-RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 R V+ VR +A Q+ V+R+ P + LF +EVPE+ + ++EIK AR PG RAK+AV Sbjct: 182 RTVVKEVRRDAGSDPQVVVSRTSPVFMERLFEVEVPEVHDGIVEIKKVARIPGDRAKVAV 241 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 +++D+++DPVGACVG++G R+ AV EL E ID++ W D+P + + A++PA+ ++ + Sbjct: 242 ESHDEKVDPVGACVGVKGVRINAVVRELSDENIDVMQWSDDPQELIARALSPAEPTNVSL 301 Query: 299 --DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356 DED + V A ++QAIG+ G N++LASQL+G+E++V + I Sbjct: 302 NQDEDPPRARVEVPADEVSQAIGKRGVNIKLASQLTGYEIDVY-------REIPADEEDI 354 Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 416 D ++ E+ L G T + + + L LD T + + E + Sbjct: 355 DIEQFGDELTEETIGKLKRIGCDTGKAVLELSADALARRADLDRDTAKQVLEIIETEFEK 414 >UniRef50_A6DKQ2 Transcription elongation factor NusA n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DKQ2_9BACT Length = 413 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 124/417 (29%), Positives = 235/417 (56%), Gaps = 6/417 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E++A+VE + EKA+ + +F+ +E A+A+ +K+ +E +++V+I+R++GD Sbjct: 1 MNSELVAMVEYLEQEKAIDKAILFDLIEDAMASVYEKEVGEESEIKVEINRRTGDVTIIA 60 Query: 61 RWLVVDEVTQPTKEITLEAA-RYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 ++ +EV EI L +A + + + +GD V+ ++ RI Q +Q I+Q++R Sbjct: 61 DVVIAEEVFDKRHEIDLASAQKEYGDEVAIGDTVKWTLQQDQMSRIAAQNTRQAIMQRLR 120 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 E+ VV+++ + GE+I+G V+ ++ + +D G A+ + + D +PRE F GD + Sbjct: 121 TFEKERVVEEYSDMVGELISGTVRHFEKNELIVDFGR-AQGGLGKMDRVPRERFDNGDHI 179 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 +L + G + ++R+ +++ +LF EV EI ++EIKA AR G R KIAV Sbjct: 180 TALLKEIDERKSGPSIVLSRTDAKLVTKLFEREVTEITNGLVEIKAVARKAGFRTKIAVA 239 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 + +DPVGAC+G+RG+RV+ + EL E++DI+ + ++ ++V A P + + +D Sbjct: 240 S--DSLDPVGACIGIRGSRVKTICQELNNEKLDIIGYSEDEEEYVREAFKPNPIEEVEID 297 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV-MTVDDLQAKHQAEAHAAIDT 358 +D + + V + +GR+G+N+RL +L W++ V V D + A T Sbjct: 298 QDGRLIKLLVSEESYKSIVGRDGENIRLTEELMDWDIEVEKYVYDTEITFDEHIQEAYQT 357 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALA 415 K ++DE A ++++ G+ +LE ++ +L+E G++ + E AK+ L Sbjct: 358 MMKLPNMDEGKARMMIDGGYLSLEGVSEASTDDLVEA-GIEADHATEIIEYAKSRLQ 413 >UniRef50_B1CB56 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CB56_9FIRM Length = 394 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 221/366 (60%), Gaps = 22/366 (6%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 K+ + ++ ++ K + +E+I A+E AL A KK +D+ V I+R SG D F Sbjct: 14 KDFIEALDEINKTKGIDKEEIIVAVEQALVAAYKKDTRTNVDLVVNINRVSGAIDAFYSK 73 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 +V+EV +EI+L A D+S LG + I+ F RI TQ AKQ+I+QK++E+E Sbjct: 74 QIVEEVEDEDREISLHEALVLDKSAVLGASMVTHIDPKGFGRIATQNAKQLIIQKLKESE 133 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDN----------------ISLDLGNNAEAVILRED 166 R ++ + F + + E++TGV+++ I +DLG AE ++ ++ Sbjct: 134 RNIISNTFMKKKDEMVTGVIQREEYKEMRKMVHGEPIKEQNRIIHIDLGK-AEGIMNSQN 192 Query: 167 MLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 + E++ PG R++ + V +G Q+ ++R+ P ++ LF EV EI + ++EIK+ Sbjct: 193 QVRSEHYHPGMRLKVYVSDVILTPKGPQIILSRTHPGLIRRLFEEEVAEISDGIVEIKSI 252 Query: 227 ARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVIN 286 +R+ GSR+K+AV T D +IDPVG C+G +G R+Q V E+G E+IDI+ + ++P +++ N Sbjct: 253 SREAGSRSKMAVYTADDQIDPVGTCIGPKGFRIQNVLNEIGDEKIDIIKYSEDPVEYIKN 312 Query: 287 AMAPADVASIVV-----DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 A+APADV + + ++ K++ + V+ L+ AIG++GQNVRLA++L+GW++++ + Sbjct: 313 ALAPADVLRVDILQTEEEDGKNSAAVVVDDSQLSLAIGKDGQNVRLAARLTGWKIDIKSK 372 Query: 342 DDLQAK 347 +Q + Sbjct: 373 SSVQEE 378 >UniRef50_B2V8D7 NusA antitermination factor n=2 Tax=Sulfurihydrogenibium RepID=B2V8D7_SULSY Length = 371 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 133/368 (36%), Positives = 221/368 (60%), Gaps = 20/368 (5%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKY--EQEIDVRVQIDRKSGDFDT 58 M+ ++ V+E +S EK +P + I +AL + TA KK++ ++ V++ D++ + Sbjct: 1 MSVKLKNVIETISREKNIPEDVIEKALRDGILTAVKKEFKLREKDAVKIIFDKEKDELKV 60 Query: 59 FRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118 + V V TKEI LE A+ D + + G YV + RI AK+VI +KV Sbjct: 61 LIKKKVTPFVEDETKEIALEEAKNYDPNADYGKYVYVPLNLEDIGRIALSVAKEVIAKKV 120 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 + ER ++ +F+++EG+IITG V++ D+I +DLG EA++ +E+ +P+E ++ GDR Sbjct: 121 SKVERDILYREFKDYEGKIITGTVRRFEGDDIIVDLGR-IEAILPKEEQIPKEKYKIGDR 179 Query: 179 VRGVLYSVRPEA------RG-----------AQLFVTRSKPEMLIELFRIEVPEIGEEVI 221 +R ++ V E +G + ++R+ P L +L IEVPEI E I Sbjct: 180 IRALVLKVSKENTYPIIEKGKLKRVIKVFEPPMVILSRTHPNFLKKLLEIEVPEIAEGEI 239 Query: 222 EIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPA 281 E+KA AR+PG RAK+AV + DK IDPVG VG++G+R+ VS+EL GE+ID++ WD++PA Sbjct: 240 EVKAVAREPGERAKVAVYSKDKNIDPVGVVVGLKGSRILNVSSELSGEKIDVIEWDEDPA 299 Query: 282 QFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 +F+I A+APA + + ++IAV L+ AIG+NG N +LA +L+GW +++++ Sbjct: 300 KFIIRALAPARAKKYRLLPREKRIEIAVPREELSLAIGKNGINAKLAHKLTGWHIDILSE 359 Query: 342 DDLQAKHQ 349 +D + + Sbjct: 360 EDFERIQK 367 >UniRef50_Q1Q1G4 Strongly similar to transcription elongation protein NusA n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1G4_9BACT Length = 357 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 128/358 (35%), Positives = 213/358 (59%), Gaps = 34/358 (9%) Query: 1 MNKE-ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTF 59 M+KE +L +V+++ +K + +E +F+ +E+AL TA KK + + V +QIDRK+G+ Sbjct: 1 MDKENLLRLVDSLHRDKEIAKEVVFQGIEAALITAAKKHFRSQEAVSIQIDRKTGEI--- 57 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 + +E R D S RIT QTAKQVI+QK+R Sbjct: 58 ---------------VAMEGDRKIDPS--------------ELGRITAQTAKQVIIQKIR 88 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 EAER ++ + F + +G I++G V++ + ++LG E V+ + + E++ G+RV Sbjct: 89 EAERDVIFEDFCKRKGVIVSGKVQRFEGATMIVNLGK-TEGVLQKSEQTANEHYTIGERV 147 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R V+ V+ ++ ++R+ P+ + +LF +EVPEI E IEIKA AR+ G R+KIAV Sbjct: 148 RAVILDVKKVGTRVKITLSRTHPDFVRKLFELEVPEIAENTIEIKALAREAGQRSKIAVA 207 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 ++D+ +D VGACVGMRG+R++ + EL GE+IDI+ W + P + NA+ PA+V+ I++ Sbjct: 208 SSDENVDCVGACVGMRGSRIKNIVDELNGEKIDIIRWSEEPELLLPNALKPAEVSGIILS 267 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357 + T I V L+ AIG+ GQNVRLAS+L+ W ++++T + + + +A+ + Sbjct: 268 PENRTATIVVPNDQLSLAIGKRGQNVRLASRLTEWNIDIITDAEFEKRQKADDLELAE 325 >UniRef50_A4E6U9 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6U9_9ACTN Length = 415 Score = 364 bits (936), Expect = 3e-99, Method: Composition-based stats. Identities = 115/399 (28%), Positives = 192/399 (48%), Gaps = 38/399 (9%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++++ + + EK + + + + LE +LA + + E +V IDR +G +R Sbjct: 4 SDMMSALMELCQEKHIDQLYLIDRLEQSLAKSYAEILHLEWGAKVTIDRTTGKIYVYRLE 63 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 + D + + E + RI Q AK I VR + Sbjct: 64 PIDDSMDEEGNFTEFEE---------------IDVTPKNTSRIAAQHAKAEINAIVRNSA 108 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVIL----------REDMLPREN 172 R + ++F G++I+G V + D + + EA + R + E Sbjct: 109 REQIYEEFSGRIGDLISGTVLQSTPDFTIVKIREGVEAELPHFDQRRYENERNERPMGER 168 Query: 173 FRPGDRVRGVLYSVRP----------EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIE 222 + ++ V+ VR E + ++R+ PE++ LF EVPEI E ++ Sbjct: 169 YLHNQHIKAVIIDVRDPNSNLQPVRGEHSRPPIVISRTHPELMRRLFEQEVPEIYEGTVQ 228 Query: 223 IKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQ 282 IK+ AR+PG R+K+AV + D R+DPVGACVG +G+RV+AV EL GER+D++LWD +PA Sbjct: 229 IKSIAREPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILWDADPAV 288 Query: 283 FVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV- 341 +V NA++PA V +++DE+K + V L+ AIG+ GQN RLA++L+GW +++ + Sbjct: 289 YVANALSPAKVTRVLIDEEKAYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSET 348 Query: 342 --DDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGF 378 D+ A D D D + E+G Sbjct: 349 LAADILKNVPVHEEPAADLIGDEEDEDVRRCEYVSEDGI 387 >UniRef50_UPI0001C373AB NusA antitermination factor n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373AB Length = 416 Score = 364 bits (935), Expect = 4e-99, Method: Composition-based stats. Identities = 104/354 (29%), Positives = 190/354 (53%), Gaps = 3/354 (0%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKY-EQEIDVRVQIDRKSGDFDTFR 60 N +E++ E ++ + + E ++SA+ A K+ Y E +RV+ID K+ F+ F Sbjct: 4 NNAFFKALESLGEENSVETDLLIEKVKSAMLKAAKRAYPHSEDRIRVEIDPKTKKFEMFI 63 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 ++D+ E+ ++ AR D + +G + +I+ R+ +AKQ I +RE Sbjct: 64 VQDIIDDYPIDENEVNIDVARTIDPNAIVGGTILKEIDISKLGRMAALSAKQSIKGDLRE 123 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRD-NISLDLGNNAEAVILREDMLPRENFRPGDRV 179 R ++ +F + E E IT V +V + E + R + +P E G V Sbjct: 124 INREQMLGKFEQKEHECITAKVSQVEPGRGTVTVVYEGTELYLFRNEQIPGETLEEGQSV 183 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 + + + + + + ++R+ +++ LF +EVPEI + +E+K+ +R+ GSR KIAV Sbjct: 184 KVYITGIIGKNKKPVVKISRTHKDLVKRLFELEVPEIYDGTVEVKSISREAGSRTKIAVW 243 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS-IVV 298 + D +D VGAC+G + +R+ A+ EL GE+IDI+ W + +F+ A+APA+V IV Sbjct: 244 SKDPNVDAVGACIGAKRSRITAIVNELNGEKIDIIPWSEKTEEFIARALAPAEVLKTIVT 303 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 352 E+++T + V L+ AIG GQN +LA++L+G+++++ D +A Sbjct: 304 SEEENTCTVIVPNNQLSLAIGNKGQNAKLAAKLTGFKIDIKPRFDSVTNEEAPE 357 >UniRef50_B8DW42 N utilization substance-like protein n=11 Tax=Bifidobacterium RepID=B8DW42_BIFA0 Length = 358 Score = 364 bits (935), Expect = 4e-99, Method: Composition-based stats. Identities = 120/353 (33%), Positives = 193/353 (54%), Gaps = 16/353 (4%) Query: 9 VEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEV 68 + A++ E+ + E + AL AL A K RV++D ++G F + R + E Sbjct: 8 IHALAQEQGIDAETVDAALSEALRLAYLKMPHAAKYARVELDPRAGSFTIWARDEIPQEP 67 Query: 69 TQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVD 128 T+ + LG+ +D F R+ TA+QVI Q R+AE V Sbjct: 68 TEDNPH----------PAPELGEEYDD--TPHDFGRLAASTARQVIQQLFRKAEDDRVFG 115 Query: 129 QFREHEGEIITGVVKKV--NRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSV 186 F G++ITGVV++ + N+ + +G+ EA++ R + +P E +R G+R+R + +V Sbjct: 116 AFSGQRGKLITGVVQQDVKDPANVHVAVGD-VEALLPRREQVPGERYRHGERIRVYVTTV 174 Query: 187 RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRID 246 +G ++ V+RS PE++ LF EVPE+ + I A AR+ G+R KIAV+ N I+ Sbjct: 175 ARGLKGPEIIVSRSHPELVRRLFEREVPELASGAVSIMAIAREAGARTKIAVRANTPGIN 234 Query: 247 PVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKHTM 305 P GA +G G+RV+AV LG E+IDI+ W NPA+F+ A++PA V+ + V+ E T Sbjct: 235 PKGALIGPGGSRVRAVMENLGSEKIDIIDWSANPAEFIAAALSPAVVSDVQVISEKNQTA 294 Query: 306 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 + L+ AIG+ GQN RLA++L+GW++ + + AK + +A A D Sbjct: 295 IAFINDEQLSLAIGKEGQNARLAAKLTGWKIGIESNSAHAAKLREQAAKAADG 347 >UniRef50_C7NH16 Transcription termination factor NusA n=55 Tax=Actinobacteria (class) RepID=C7NH16_KYTSD Length = 357 Score = 362 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 111/343 (32%), Positives = 189/343 (55%), Gaps = 19/343 (5%) Query: 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV 65 +AV+ V E+ +P + + ALE+AL A + + + RV++DR+SG + R Sbjct: 5 MAVLREVEREREIPLDVLVPALETALLQAYQHEAGGRRNARVELDRRSGQVVVWAR---- 60 Query: 66 DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 125 LE + D F RI T +QVI Q++R+ E Sbjct: 61 ------EDAPVLEDGTRGEAGPEFDDT------PEDFGRIGAFTVRQVIRQRLRDLEDEA 108 Query: 126 VVDQFREHEGEIITGVVKKV-NRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLY 184 V+ F+ EG+I+ GV+++ + I +DLG E ++ + +P E+++ GDR+R + Sbjct: 109 VLGDFKGKEGDIVAGVIQQSNDPHAIHVDLG-TVEGLLGTSEQVPLEDYKHGDRIRCYVI 167 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 244 + +G + ++R+ P ++ +LF +EVPE+ + + I++ AR+ G R+K+AV+ Sbjct: 168 HAKRGMKGPLIGLSRTHPNLVRKLFALEVPEVADGTVRIESIAREAGHRSKMAVRATQPG 227 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKH 303 ++ G+C+G G RV+AV EL GE+IDIV +DD+P +FV A++PA V S+ VVDE Sbjct: 228 VNAKGSCIGPMGGRVRAVMNELQGEKIDIVDYDDDPRKFVAAALSPAKVTSVTVVDEKTR 287 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA 346 + + V A L+ AIG+ GQN RLA++L+GW +++ Sbjct: 288 SARVTVPAHQLSLAIGKEGQNARLAARLTGWRIDIQPDHTADE 330 >UniRef50_B2J957 NusA antitermination factor n=8 Tax=Cyanobacteria RepID=B2J957_NOSP7 Length = 425 Score = 362 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 118/380 (31%), Positives = 202/380 (53%), Gaps = 28/380 (7%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATAT----------KKKYEQE--IDVRVQIDRK 52 + ++E++S E+ LPR + A+ AL +K+++++ + V++D Sbjct: 9 LKELIESISRERNLPRLAVQSAIREALLKGYERYRRAQNLERKQFDEDYFENFEVELDID 68 Query: 53 SGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESV--TFDRITTQTA 110 F +V+EV +I+L+ + LGD V + F R+ Sbjct: 69 GEGFRVLSTKTIVEEVNNTDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 111 KQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNN-----AEAVILRE 165 KQV+ QK+R+ +R MV ++F++ EG ++ V + R ++ L + + EA + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVVLAVSSGFGQPEVEAELPKR 188 Query: 166 DMLPRENFRPGDRVRGVLYSVRP-EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIK 224 + LP +N+R + L V + RG QL V+R+ +++ LF EVPEI +EV+ I Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 225 AAARDP-------GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWD 277 A AR+ G R KIAV T D+ +DPVGAC+G RG+R+Q V EL GE+ID++ W Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 278 DNPAQFVINAMAPADVASI-VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWEL 336 +PA ++ NA++PA V + ++D + + V L+ AIG+ GQNVRLA++L+GW++ Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 337 NVMTVDDLQAKHQAEAHAAI 356 ++ + E A+ Sbjct: 369 DIKDKAKYDYAGEDEKFTAV 388 >UniRef50_C6X2U0 Transcription termination protein NusA n=2 Tax=Flavobacteriaceae RepID=C6X2U0_FLAB3 Length = 415 Score = 361 bits (928), Expect = 3e-98, Method: Composition-based stats. Identities = 115/413 (27%), Positives = 211/413 (51%), Gaps = 6/413 (1%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 ++ EK++ + + +E +L T +K+++ + V ++ GDF F + Sbjct: 6 LIEAFGDFKEEKSISKIDLMAIIEDSLKTLLRKRFDSDDHFDVIVNPDKGDFQIFLNKTI 65 Query: 65 VDE--VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 V++ EI + A+ D + +G+ +I R + T KQ++ K++E Sbjct: 66 VEDDMSEDDDLEIEISEAKKIDPTFEVGEEFTIEIPIEGLGRRSILTLKQILATKLQEHN 125 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 A++ ++FR+ GEI+ G V + ++ L + E ++ +E+ +P + F+ G+ +R + Sbjct: 126 NAVLYEEFRDKIGEIVVGEVHHIRHKHVILLDDEDNEFILPKENQIPSDFFKKGENIRTI 185 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND 242 + SV + Q+ V+R+ P+ L +L +E+PEI + I +K R PG +AKIAV D Sbjct: 186 VESVDFKGSKPQIIVSRTAPKFLEKLLELEIPEIQDGTIILKKVVRIPGEKAKIAVDAYD 245 Query: 243 KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK 302 RIDPVGACVG++G+R+ V EL E ID++ W NP V A+ V I ++E+ Sbjct: 246 DRIDPVGACVGVKGSRIHGVVRELKNENIDVIQWSKNPEIMVKRALGNVTVNKIEINEET 305 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKY 362 + +++ IG+ GQN+RLAS LSG+E++V + + A D Sbjct: 306 KYAMVYTPVEEISRVIGKQGQNIRLASWLSGYEIDVHRESAEDDDVELKEFAGSD----A 361 Query: 363 LDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALA 415 DI++ + G +T + + + LL++ L+E T+E +++ K Sbjct: 362 GDIEQWIIDEFNKVGLTTAKSVLDKDTEALLKMVDLEEETIEEVKQILKEEFE 414 >UniRef50_C4Z5N4 N utilization substance protein A n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z5N4_EUBE2 Length = 381 Score = 361 bits (927), Expect = 4e-98, Method: Composition-based stats. Identities = 136/382 (35%), Positives = 223/382 (58%), Gaps = 15/382 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKE++ ++A+ E + +E +F A+E +L K ++++ + RV++DR++GDF + Sbjct: 1 MNKELIMALDALEKENGIDKEIMFAAIEKSLMDEYKAEFDKADNGRVELDRRTGDFHIYS 60 Query: 61 RWLVVDEVTQPT------------KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQ 108 VV+EV P +I LE AR LGD + +++S F R + Sbjct: 61 DRTVVEEVIVPENRENKKEKYVSGTDIALEDARKIKPDCQLGDVITVEVKSEEFSRKAAK 120 Query: 109 TAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKV-NRDNISLDLGNNAEAVILREDM 167 AK IVQ +RE E+ + +++ E E+ITG+V++V + ++++DLG + V+ +D Sbjct: 121 NAKNTIVQTIREQEKNALYNEYHSKEKELITGIVQRVADNGDLTIDLGR-LQTVLKADDK 179 Query: 168 LPRENFRPGDRVRGVLYSV-RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 + F PGDR++ + V E G + V+R E++ +LF EV EI + V+EI Sbjct: 180 FKDKKFVPGDRIKLYVVDVINREKGGPVVRVSRKSQELVKKLFEEEVTEIKDGVVEIMGI 239 Query: 227 ARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVIN 286 AR+ GSR K+AV+ N +DPVGACVG+ GARV+A+ ELG E+IDI+ WD N AQ ++N Sbjct: 240 AREAGSRTKMAVRANVANVDPVGACVGINGARVKAIVNELGNEQIDIIEWDSNSAQLIVN 299 Query: 287 AMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA 346 A++PA V S V D+++ I V L+ AIG+ GQNVRLA++L+G+ +++ + + + Sbjct: 300 ALSPAKVVSAVADDEEKKAKIVVSEQQLSLAIGKQGQNVRLAAKLTGYGIDIKSEAEPEE 359 Query: 347 KHQAEAHAAIDTFTKYLDIDED 368 + E L +DE+ Sbjct: 360 HTEEENLEEEYVEPSELSLDEE 381 >UniRef50_D2MPS9 Transcription termination factor NusA n=3 Tax=Erysipelotrichaceae RepID=D2MPS9_9FIRM Length = 569 Score = 360 bits (925), Expect = 5e-98, Method: Composition-based stats. Identities = 143/474 (30%), Positives = 248/474 (52%), Gaps = 15/474 (3%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYE-QEIDVRVQIDRKSGDFDTFRR 61 K+ LA + V E+++P+ I EAL+ A+A A KK E +IDV +I+ K D F+ Sbjct: 6 KKWLAALTDVEEERSIPQSVILEALKEAMAKAYKKNEELPDIDVVAEINEKKKSIDLFQN 65 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 ++VV EV E++LE AR D++ +GD V +E + R AK V+ QK+REA Sbjct: 66 YVVVTEVEDDELEMSLEQARQLDKNAQVGDTVRRPVEIESMTRAAAMLAKNVMRQKIREA 125 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E+ V +++ E++ G ++ + ++LG A++L + +P E R R++ Sbjct: 126 EKEAVYNEYIGQLNEMVFGTIESIKDKFTLVNLGKTT-ALMLSGEQIPNERLRENQRIKV 184 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 V+ V E +GAQ+ V+R ++ LF EVPEI + V+EIKA AR+ G R K+AV ++ Sbjct: 185 VITEVNKEGKGAQVLVSRGTAMLVRRLFEAEVPEIFQGVVEIKAIAREAGERTKMAVLSH 244 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 +DP+GAC+G RG+RVQ + EL GE++DI W ++ V NA++PA++ +++ +ED Sbjct: 245 HPEVDPIGACIGPRGSRVQEIIKELKGEKVDIFEWSEDITSLVQNALSPAEIETVIPNED 304 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA-----------KHQA 350 ++ + V L+ AIG+ G+N RLA +L+ ++++ T +L+ + Sbjct: 305 -GSLMVIVAEDQLSLAIGKRGKNARLAVKLTNRKIDIKTRAELEEAGVDYEALMEKAKER 363 Query: 351 EAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 410 + I+ + + A + + TLE+L +EL E E E E + + Sbjct: 364 KEKLQIEAQERARKAALEAAKLAESKRLETLEKLRAENSEEL-EQEFFPEEMQEVVDDGL 422 Query: 411 KNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGI 464 + I + E + K ++++ E + + LE+LA + Sbjct: 423 VEEVDHIEETSSEVREEEKVEEEIMVEEKPIETKKEEKKSSKHANLEELANKAT 476 >UniRef50_C9RKT3 NusA antitermination factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKT3_FIBSS Length = 407 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 136/362 (37%), Positives = 199/362 (54%), Gaps = 15/362 (4%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 +L V++ V +K++ I +AL+ AL +A +K E + V ID ++ + F Sbjct: 8 NLLDVLKEVVEDKSVDDSVILDALKKALISAARKYLHIEKKINVDIDMETNEVHVFLNVE 67 Query: 64 VVDEVTQPTKEIT-------------LEAARYEDESLNLGDYVEDQIESVTFDRITTQTA 110 VVD+ +T ++ AR +E GD + ++ + +F R QTA Sbjct: 68 VVDDYPDYDPNMTAEEVAEMDEGYMLVDEARDFNEDAQAGDSLYMELPTSSFGRQAIQTA 127 Query: 111 KQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR 170 KQ++ Q +R AE ++D +R G II G V ++ + N+ +DLGN EA + + +P Sbjct: 128 KQLLTQHIRSAECQRIMDIYRSRIGTIINGTVLRLEQRNVIVDLGNKIEAELPAREQIPH 187 Query: 171 ENFRPGDRVRGVLYSVRPEAR-GAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARD 229 E G V+ V+ V + GAQ+ ++RS + L L R EVPEI E +EIKA ARD Sbjct: 188 ERLTQGASVKAVIARVEESTKSGAQVILSRSNADFLKALLRQEVPEIYEGTVEIKAVARD 247 Query: 230 PG-SRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM 288 RAKIAV + D++IDPVGACVGM+GARVQ + ELG ERIDIV WD+N FV ++ Sbjct: 248 SKNRRAKIAVYSRDEKIDPVGACVGMKGARVQTIVRELGNERIDIVHWDENFDVFVQRSL 307 Query: 289 APADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKH 348 APA V + D + I V+ NLAQAIG+ GQNV LA +L +L+V + Sbjct: 308 APASVLKMFPVPDTDRIVIIVDDENLAQAIGKGGQNVELAGRLVDRKLDVHGEQEWSQMD 367 Query: 349 QA 350 + Sbjct: 368 EE 369 >UniRef50_B0MQX1 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQX1_9FIRM Length = 370 Score = 359 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 113/351 (32%), Positives = 190/351 (54%), Gaps = 5/351 (1%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+ + ++ EK + + E +++AL A KK+Y + +++ ID G FD + Sbjct: 8 ELFEALTLLAKEKGIDPAVLIEKIQTALVIAIKKEYPRSENIKFDIDIAKGKFDVAIQKE 67 Query: 64 VVDEVTQPTKEITLEAARYE-DESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 V EV +I++E A+ L GD V ++++ F RI QTAKQVI Q ++E E Sbjct: 68 VAAEVEDDANQISMEEAKTHTRRKLEYGDIVAIKLDTQHFGRIAAQTAKQVIKQGLKEIE 127 Query: 123 RAMVVDQFREHEGEIITGVVKKVN--RDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 R +V Q+ + E +T V K N +++L N E + R + +P E RPGD V+ Sbjct: 128 REQLVAQWGGLQDEAVTVTVLKTEPRTGNATVNL-NGNEVPLFRSEQIPGEVLRPGDMVK 186 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V L ++R E++ LF EVPEI + +EIKA +R+ GSR+K+AV + Sbjct: 187 VYVSGVSATDHRPMLKISRVNKELVKRLFESEVPEIYDGTVEIKAISREAGSRSKVAVIS 246 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV-D 299 N+ +D +GAC+G R+ V ELGGE++D+V + + P +F+ A+ P+DV + + D Sbjct: 247 NNPDVDALGACIGPGRQRISKVCAELGGEKMDVVFYSEKPEEFIAQALKPSDVIRVEIPD 306 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA 350 + V L+ AIG GQN +LA++L+G+++++ ++ Sbjct: 307 PEVKACTAIVPDNQLSLAIGNKGQNAKLAAKLTGFKIDIRPESGFYEGIES 357 >UniRef50_C8W720 NusA antitermination factor n=9 Tax=Coriobacteriaceae RepID=C8W720_ATOPD Length = 413 Score = 356 bits (915), Expect = 9e-97, Method: Composition-based stats. Identities = 109/365 (29%), Positives = 179/365 (49%), Gaps = 41/365 (11%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M E++ + + EK + + + LE +LA + + RV IDR +G + Sbjct: 1 MASEMMEALMLLCQEKHIDELYLLDRLEQSLAKSYADVLHLDFGARVTIDRATGRVYVYE 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQ---IESVTFDRITTQTAKQVIVQK 117 + G+Y E + RI Q AK I Sbjct: 61 LVP------------------KGEPDEETGEYTEFDEVDVTPPDTSRIAAQHAKAEIKTL 102 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVIL----------REDM 167 VR A RA + D+FR G+IITG V + D + + EA + R++ Sbjct: 103 VRNAARAQIYDEFRGRVGDIITGTVLQSTPDFTIIKIREGVEAELPHFDQRRFPDERDER 162 Query: 168 LPRENFRPGDRVRGVLYSVRP----------EARGAQLFVTRSKPEMLIELFRIEVPEIG 217 E + R++ ++ VR E + + V+R+ P+++ LF +EVPE+ Sbjct: 163 PAGERYLHNQRIKAIIVDVRDPNATQPAVRGERQRPPIVVSRTHPDLIRRLFELEVPEVY 222 Query: 218 EEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWD 277 + V+ I++ AR+ G R+KIAV + D+R+DPVGACVG +G+RV+ V +EL GER+D+V W Sbjct: 223 DGVVSIRSIAREAGVRSKIAVSSVDERLDPVGACVGPKGSRVRTVVSELRGERVDVVPWF 282 Query: 278 DNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELN 337 D+ A+ V +A++PA V+ ++VD + V L+ AIG+ GQN RLA++L+G ++ Sbjct: 283 DDAARCVASALSPARVSRVIVDGATGHATVIVPDDQLSLAIGKEGQNARLAARLTGLHID 342 Query: 338 VMTVD 342 + Sbjct: 343 IKNES 347 >UniRef50_B3SFF1 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SFF1_TRIAD Length = 348 Score = 356 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 138/342 (40%), Positives = 217/342 (63%), Gaps = 12/342 (3%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 EIL V EAV+ +K + +E I EALE A+A A K+KY I V+ I+R G+ + +R Sbjct: 8 GNEILHVAEAVARDKGISKESIIEALEEAMAIAAKRKYGANIKVKAHINRNLGNIELYRE 67 Query: 62 WLVV----------DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAK 111 LVV DE + K I + A+ D +N GD ++ + + R+ +AK Sbjct: 68 VLVVKDGFISDNTRDENNEEVKTIEISKAQETDPDINEGDVIKQILPPLEIGRLNAISAK 127 Query: 112 QVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRE 171 Q+I+ KV+E E+ V ++++ GE++ GVV+K+ + LG +AEA++ ++ L + Sbjct: 128 QIIINKVKELEKDKVFEEYKNRVGEVLNGVVEKIETGGYIVKLG-SAEAILKKDQTLKTD 186 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 ++ GDR+R L + E+ G L ++R+ + +I+LF+ EVPEI + +IE+K ARDPG Sbjct: 187 FYKLGDRIRACLAKLDKESNGPILILSRTHKDFVIQLFKQEVPEIYDRIIEVKNIARDPG 246 Query: 232 SRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM-AP 290 SR KIAV ++D IDPVG+CVGMRG RVQA+ EL GE+IDIV W D+PA FV+N++ + Sbjct: 247 SRTKIAVYSSDPSIDPVGSCVGMRGVRVQAIIKELKGEKIDIVKWSDDPATFVVNSLGSS 306 Query: 291 ADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLS 332 V+ +++DE+++ ++I V + +QAIGR GQN++L S+L Sbjct: 307 IRVSKVIIDEEQNKIEIIVPEEDQSQAIGRRGQNIKLISELV 348 >UniRef50_D0J8H0 Transcription elongation factor NusA n=36 Tax=Bacteroidetes RepID=D0J8H0_BLASP Length = 419 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 111/416 (26%), Positives = 211/416 (50%), Gaps = 10/416 (2%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N+ ++ +EK + R + LE ++ +KKY+ + + ++ GD + +R Sbjct: 3 NEALIDSFSVFKDEKNIDRASLMAILEESIRCVLRKKYDSSKNYDIIVNPDQGDLEIWRN 62 Query: 62 WLVVDE--VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 +VV + V KEI L AR + +G+ V +++E + R + +Q ++ K+ Sbjct: 63 RIVVQDGTVKDVNKEIELSTARKIEIDFEIGEEVTEKVELKSLGRRAILSLRQNLLSKIN 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 E + + +F+ GEII V + I + E V+ +++ +P + FR GD V Sbjct: 123 EYDNTNIYKKFKNKIGEIINVEVYHILPKQIIMRDEEQNEMVLPKQEQIPNDFFRKGDPV 182 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R ++ V + +TR L ELF++E+PE+ E +I +K AR PG +AK++V Sbjct: 183 RALVKRVDWKDNKPLAILTRKDDSFLEELFKLEIPEVSEGLITVKKVARIPGEKAKVSVD 242 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 + D RIDP+GACVGM+G+R+ + EL E ID++ + N ++ A++PA V+ + V+ Sbjct: 243 SYDDRIDPIGACVGMKGSRIHPIVRELKNENIDVINYTTNIQLYITRALSPAKVSMMEVN 302 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTF 359 E+ +++ V+ +++AIGR GQN+RLASQL+G+++++ ++ Sbjct: 303 EEHKYVNVYVKLEEISKAIGRGGQNIRLASQLTGYKIHIF--------RDFPYEDDVELT 354 Query: 360 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALA 415 +I+ + + G +T + + +L + L+E + + K Sbjct: 355 EFSDEIEPEVLERFHKVGLTTAKSVLNYRNNDLSKRTNLEEKIINKVVSILKKEFE 410 >UniRef50_B0VFB8 Transcription elongation factor NusA n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFB8_9BACT Length = 411 Score = 351 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 110/413 (26%), Positives = 228/413 (55%), Gaps = 6/413 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+ +L + ++ K L ++ I + A+ + +K+ E E ++V ID +G Sbjct: 1 MSANMLDALNKLAAIKQLNKDTIQTIILEAVTSTLQKRLEPEAGLQVYIDELAGCVKVKF 60 Query: 61 RWLVVDEVTQPTKEITLEAARY-EDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 + LVV+ + +I+L AR ++ LG+Y+E + F+ +T +++I K+R Sbjct: 61 KSLVVER-EEGLGQISLIDARNDYYHNVQLGEYIEKTMTLSEFEPKIVKTVQKIIQDKIR 119 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVN-RDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 + E + + F + + I+TG +K ++ +D G+ +A++ ++ + E +R GD Sbjct: 120 QLEEEKIQNDFNKQKHTIVTGKIKAIDDYGGYIIDTGH-VDALLPVDEQIENEFYRVGDN 178 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 ++ + ++R + G + ++R+ PE + +LF E+P I I+I+ R+PG R K+ + Sbjct: 179 IKAYVVNIRTQKDGVVIILSRTNPEFVKKLFEAEIPAIFSGEIKIRKIVREPGIRTKVEL 238 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 + D ++DP+ ACVG +G R+ ++ EL GE+IDIVL D+P + + NA+ + +++ Sbjct: 239 EAEDPKVDPIVACVGPKGTRIDSLRKELHGEQIDIVLHSDDPEKMIENALGVEGIKRVII 298 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 E H+ + ++ + AIG+ G+NV+LA++L G ++++ T+ + + K E + Sbjct: 299 -ERNHSASVILDEADKLMAIGKQGKNVKLAAKLVGMKIDIYTMAEFEEKMAKE-RRTVSH 356 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 411 T+ + A L + G+++++++ ++EL +EG+ + T E L+E AK Sbjct: 357 ITELDGVTPKIAETLKQAGYTSVQDIYTASLEELCNLEGMGQKTAERLKEAAK 409 >UniRef50_D1AL29 NusA antitermination factor n=10 Tax=Fusobacteriaceae RepID=D1AL29_SEBTE Length = 358 Score = 350 bits (899), Expect = 7e-95, Method: Composition-based stats. Identities = 127/341 (37%), Positives = 215/341 (63%), Gaps = 4/341 (1%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 L ++ + EK + +E++ EA+E+AL A KK Y ++ + V+I+ +G+ F R + Sbjct: 9 FLEALDELEKEKGIKKEELLEAVETALLAAYKKNYGEKENAEVKINHDTGEVKVFSRKEI 68 Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 VDEV P EI+L+ A+ + +G VE +I + F R Q AKQ+++QKVRE E+ Sbjct: 69 VDEVENPEYEISLDDAKNFKKRAKVGGVVELEINAEDFKRNAIQNAKQIVIQKVRECEKQ 128 Query: 125 MVVDQFREHEGEIITGVVKKVN-RDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 + + F+E E I+TG+V+KV+ + ++ +D+ N EA+I +++ + F+ GDRV+ + Sbjct: 129 NIYNNFKEKENSIVTGIVRKVDEKGSLYIDI-NGLEAIIPEKELSDTDVFKQGDRVKVYI 187 Query: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 V + + F++R EM+ +LF +E+PEI + VI IK+ AR+ GSR K+A+ ++D Sbjct: 188 GKVEEGTKFTKTFISRKSEEMIRKLFDLEIPEIEDGVIVIKSVAREAGSRTKVAIYSDDP 247 Query: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED-- 301 +D GAC+G G R+Q++ EL GE+IDIVLW+++ FV NA+ PA+V S+ + ED Sbjct: 248 NLDVKGACIGKGGMRIQSIIDELKGEKIDIVLWNEDIRYFVKNALNPAEVISVEIIEDNG 307 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 + + V + L+ AIG+ GQN RLA++L G ++++ T + Sbjct: 308 EEVAKVEVASDQLSLAIGKKGQNSRLAAKLCGIKIDIFTSE 348 >UniRef50_P0A5M3 Transcription elongation protein nusA n=50 Tax=Actinomycetales RepID=NUSA_MYCBO Length = 347 Score = 347 bits (891), Expect = 5e-94, Method: Composition-based stats. Identities = 119/347 (34%), Positives = 196/347 (56%), Gaps = 31/347 (8%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN ++ + A+ ++ + ++ E ++SAL TA + + D R++IDRK+G Sbjct: 1 MNIDMA-ALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVI- 58 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 AR DE+ NL +D F RI TA+QV++Q+ R+ Sbjct: 59 -------------------ARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRD 97 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDN----ISLDLGNNA---EAVILREDMLPRENF 173 AE +F EGEI+ GV+++ +R N + + +G E VI + +P E++ Sbjct: 98 AENERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESY 157 Query: 174 RPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSR 233 G+R+R + V AR + ++R+ P ++ +LF +EVPEI + +EI A AR+ G R Sbjct: 158 EHGNRLRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHR 217 Query: 234 AKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADV 293 +KIAV++N ++ GAC+G G RV+ V +EL GE+IDI+ +DD+PA+FV NA++PA V Sbjct: 218 SKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKV 277 Query: 294 ASI-VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 S+ V+D+ + V L+ AIG+ GQN RLA++L+GW +++ Sbjct: 278 VSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIR 324 >UniRef50_D2NNU7 Transcription elongation factor n=12 Tax=Actinobacteridae RepID=D2NNU7_9MICC Length = 365 Score = 347 bits (891), Expect = 6e-94, Method: Composition-based stats. Identities = 118/380 (31%), Positives = 198/380 (52%), Gaps = 27/380 (7%) Query: 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV 65 L + A++ +++L E++F +E+AL A K+ R ID +G+F Sbjct: 9 LGALRALAKQRSLVMEELFTLVENALLLAYMKQPGAIKGSRAVIDHTTGEFVIL------ 62 Query: 66 DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 125 A DE D +D F RI T +QV+ Q++R+AE A Sbjct: 63 --------------APELDEDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLRDAEDAS 106 Query: 126 VVDQFREHEGEIITGVVKKVNR-DNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLY 184 V+ +F++ EG +++GV+++ N + +DLG EAV+ + +P E + G R+R L Sbjct: 107 VLGEFKDREGTLVSGVIQQGNNPRMVQVDLG-TVEAVLPSNEQVPGEKYPHGSRLRAYLV 165 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 244 R +G + V+RS P +++ LF EVPEI E ++ I + AR+ G R+KIAV + Sbjct: 166 EARRGPKGPSIVVSRSHPNLVLRLFEHEVPEISEGLVAINSIAREAGHRSKIAVSAKNPT 225 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV-DEDKH 303 I+ GAC+G GARV+AV+ EL E+IDIV + +PA F+ A++PA V +++ + ++ Sbjct: 226 INAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPATFIAAALSPAKVTEVIIANPREY 285 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 + V L+ AIGR GQN RLA++L+GW +++++ E AA + L Sbjct: 286 SARAVVPDDQLSLAIGREGQNARLAAKLTGWRIDILSESKYAQVRAEEEVAAR--VARSL 343 Query: 364 DIDEDFATVLVEEGFSTLEE 383 + + E + ++ Sbjct: 344 AEEASAEKAIEEATEESAQD 363 >UniRef50_Q0H8S9 NusA n=2 Tax=Spiroplasma RepID=Q0H8S9_SPIKU Length = 483 Score = 345 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 119/445 (26%), Positives = 226/445 (50%), Gaps = 3/445 (0%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 ++L+ ++ + +EK + R+ I ++++ + A +K ++ E + V+I +K+G + Sbjct: 16 GAKLLSTIDEIVSEKQISRDLILDSIKEGIRKAYEKHFDPEATIIVEIHQKTGQIKVEKE 75 Query: 62 WLVVDEVTQPTKEITLEAARY-EDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV +V EI L A+ E + + D V +Q+ S F R+ Q+I Q+++E Sbjct: 76 LTVVKKVEDDLLEIGLNEAKEKYGEQITIDDKVYEQVNSEEFSRLAIFQVGQIIKQQIKE 135 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ + D++ +G ++TGVV + +++ A I R++++ E+F G + Sbjct: 136 AEKDSIFDEYIIQKGHLMTGVVIAAEEKYLLVEVERTF-AYIPRKNLIFSEHFEVGQPIT 194 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V Q+ +R+ + L L E+PEI E+VIE+KA ARDPG R+KIAV + Sbjct: 195 FLAEDVVKSKNAGQIIGSRTSNDFLYSLLEREIPEIFEQVIEVKAIARDPGRRSKIAVYS 254 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ++ IDP+GACVG +G+R+ V+ EL E+IDI +++DN QF+IN+++P V SI ++ Sbjct: 255 TNENIDPIGACVGSKGSRINKVTAELQDEKIDICIYNDNSQQFIINSLSPVKVISITTND 314 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 ++ D+ V L+ AIG+ G + +L ++L+ W+LN+M+ + K T Sbjct: 315 EEKEADVVVPDEQLSLAIGKGGSSAKLVAKLTKWKLNIMSYSEALTKQVEILWNGNLTTD 374 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEA-LRERAKNALATIAQ 419 + + + + + + E E ++E E + +N Sbjct: 375 ELSALKVKLKDKIKPKAIVETNTVDITAGLPVEEFEIIEEQMAEETMILDEENYHVDDLT 434 Query: 420 AQEESLGDNKPADDLLNLEGVDRDL 444 + +N+ + NL + + Sbjct: 435 ESTPKVLENEIQEIEDNLSYFESEQ 459 >UniRef50_O51740 Transcription elongation protein nusA n=21 Tax=Borrelia RepID=NUSA_BORBU Length = 482 Score = 343 bits (881), Expect = 8e-93, Method: Composition-based stats. Identities = 114/427 (26%), Positives = 226/427 (52%), Gaps = 16/427 (3%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDE 67 ++ ++N++ + + I + ++ ++ A KK + + ++ D +GD + + +V E Sbjct: 8 MIVNIANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKE 67 Query: 68 VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVV 127 V EI + E++ GDY +I FDR++ Q AKQ ++ E ++ Sbjct: 68 VKDSLLEILEKDISK--ENIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEIL 125 Query: 128 DQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVR 187 +F+ +++ G V++ ++ ++LGN + +I ++ PRE + D++R ++Y+V+ Sbjct: 126 SEFKSKLNKVVIGYVQQNRNGDLYVNLGN-TDGIIPKKYQSPREVYNLNDKIRVLVYNVK 184 Query: 188 PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDP 247 G ++ ++R+ P+ + EL +E+PEI E +I+I RDPG R K+AV + + IDP Sbjct: 185 KGKNGIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDP 244 Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKHTMD 306 VG C+G +G R+Q++ EL GE+IDI+ + + +F+ +++ P+ + + ++DED H Sbjct: 245 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKAL 304 Query: 307 IAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDID 366 + V L+ AIG+ GQNVRLA++L W ++V T A+ +A + +T D Sbjct: 305 VVVSDDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQF-AEMKANSEFKQETLEM---FD 360 Query: 367 EDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLG 426 + V+ EE F + +++ ++ LD + L + + + QA E L Sbjct: 361 KVMQDVVEEEQFEEISKISD--------LKLLDPSVISNLSKEGFDDINNFLQADEGVLF 412 Query: 427 DNKPADD 433 + + + Sbjct: 413 NLGVSYE 419 >UniRef50_B7K5I0 NusA antitermination factor n=9 Tax=Cyanobacteria RepID=B7K5I0_CYAP8 Length = 412 Score = 343 bits (881), Expect = 8e-93, Method: Composition-based stats. Identities = 122/390 (31%), Positives = 211/390 (54%), Gaps = 28/390 (7%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKK----------YEQE--IDVRVQIDRKSGD 55 ++E +S LP+ + EAL AL ++ + ++ + V++D + Sbjct: 12 MIEEISQLHNLPKSAVQEALREALLKGYERYRRSQNLERQAFHEDYFDNFEVELDTEEEG 71 Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIES--VTFDRITTQTAKQV 113 F +V+ V I+LE + LGD V + F R+ KQV Sbjct: 72 FRILSTKKIVEAVENTDHFISLEEVQEVASEAQLGDEVVLDVTPNQKDFGRMAAIQTKQV 131 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNN-----AEAVILREDML 168 ++QK+R+ +R ++ ++F E EG ++ V + R + + + + EAV+ + + L Sbjct: 132 LLQKLRDQQRKLIQEEFNEIEGTVLNARVLRFERQDAIVAVQSTFGQPEVEAVLPKREQL 191 Query: 169 PRENFRPGDRVRGVLYSVRPEA-RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAA 227 P +N+R + +L VR + RG QL V+RS ++++LF +EVPEI EE++ I A + Sbjct: 192 PNDNYRANATFKVLLKKVREGSHRGPQLIVSRSAAGLVVDLFTVEVPEIEEEIVRIVAVS 251 Query: 228 RDP-------GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNP 280 R+ G R KIAV T ++ +DPVGAC+G RG+R+QAV EL GE+ID++ W +P Sbjct: 252 REANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDP 311 Query: 281 AQFVINAMAPADVASIV-VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 A ++ NA++PA V +++ ++ D+ + V L+ AIG+ GQNVRLA++L+GW++++ Sbjct: 312 ATYIANALSPARVDNVILINPDERHALVLVAEDQLSLAIGKEGQNVRLAARLTGWKIDIK 371 Query: 340 TVDDLQAKHQAEAHAAIDTFTKYLDIDEDF 369 QA+ + + HA T L+ D + Sbjct: 372 DTATYQAEVEQKKHAQNQTAIDPLEEDPNL 401 >UniRef50_Q0I7K4 Transcription termination factor NusA n=43 Tax=cellular organisms RepID=Q0I7K4_SYNS3 Length = 501 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 127/429 (29%), Positives = 210/429 (48%), Gaps = 33/429 (7%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKK------------YEQE--IDVRVQIDRKS 53 ++E +S EK L + + AL AL ++ +++E + V +D Sbjct: 12 LIEDISEEKKLAPQVVEAALREALLKGYERYRRTLYLGISEDPFDEEYFSNFDVALDLDE 71 Query: 54 GDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESV--TFDRITTQTAK 111 + ++VDEV +I L E GD V + F R+ T K Sbjct: 72 EGYRVLASKIIVDEVESEDHQIALAEVMQVAEDAQAGDTVVLDVTPEKEDFGRMAAATTK 131 Query: 112 QVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNN-----AEAVILRED 166 QV+ QK+R+ +R M+ ++F + E ++T V + R +I + + + EA + R D Sbjct: 132 QVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEAELPRRD 191 Query: 167 MLPRENFRPGDRVRGVLYSVRPEAR-GAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKA 225 LP +N+R + L V R G QLFV+R+ +++ LF EVPEI E + I A Sbjct: 192 QLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIVA 251 Query: 226 AARDP-------GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDD 278 AR+ G R K+AV + ++ +DPVGAC+G RG+R+Q V EL GE+ID++ W Sbjct: 252 VAREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIRWSQ 311 Query: 279 NPAQFVINAMAPADVASI-VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELN 337 +P+Q++ N+++PA V + +VD + + V L+ AIGR GQNVRLA++L+GW+++ Sbjct: 312 DPSQYIANSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGWKID 371 Query: 338 VMTVDDL-QAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIE 396 + + Q A I + + + L E + EE ++EL + Sbjct: 372 IKNSTEYDQTAEDAVVSELISQREEEEALQREAEERLAIEQAARAEE--DARLRELYPLP 429 Query: 397 GLDEPTVEA 405 +E E Sbjct: 430 EDEEGYTED 438 >UniRef50_Q2SSE3 Transcription elongation protein nusA, putative n=4 Tax=Mollicutes RepID=Q2SSE3_MYCCT Length = 558 Score = 330 bits (846), Expect = 8e-89, Method: Composition-based stats. Identities = 106/350 (30%), Positives = 192/350 (54%), Gaps = 3/350 (0%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 E+L ++ + EK + +E I L+ L A ++ Y+ + +++ I+ K+G + Sbjct: 4 GTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINEKTGSITMHQE 63 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIE-SVTFDRITTQTAKQVIVQKVRE 120 VV+E+ EITL+ A+ ++ + +GD + IE S F R+ +Q+ QK+RE Sbjct: 64 LKVVEELDDDWLEITLQKAKLQNPNAQIGDIIYKPIEFSEEFSRMVVNQVRQIFQQKIRE 123 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AERA + +QF EGE++ V +NR+N + N A + + + E F+ + + Sbjct: 124 AERARIYEQFISLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKNKTINNEIFQINEIID 183 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V E++ +Q+ ++R+ P L +L EVPE+ ++EIK +R+PG R+K+AV T Sbjct: 184 VYIEVVEKESKLSQIAISRTAPAFLTKLIEREVPEVRMGIVEIKGVSREPGKRSKVAVVT 243 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 +++ ++P+GA +G+ G R+ +S L GE+ID++ W D+ ++INAM P V SI Sbjct: 244 HNQNVEPIGAIIGVGGNRINRISDILKGEKIDVIRWSDDQITYLINAMTPVKVISINKIG 303 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA 350 D+ DI V L+ AIG+ G +L + L ++N+ + ++ Sbjct: 304 DE--YDIVVPDSQLSLAIGKQGITAKLIASLLKNKINIFSYSIALKENMD 351 >UniRef50_C7NAM6 NusA antitermination factor n=6 Tax=Fusobacteriaceae RepID=C7NAM6_LEPBD Length = 414 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 133/391 (34%), Positives = 226/391 (57%), Gaps = 12/391 (3%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 L ++ + EK + +E++ E +E+AL A KK Y ++ +V+V I+R SGD F + L+ Sbjct: 9 FLEALDELEKEKGILKEELLETIETALLAAYKKNYGEKDNVKVTINRNSGDVKVFSQRLI 68 Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 V+ V P +EI+LE A + LGD ++ +I + +F R Q AKQ++VQKVRE E+ Sbjct: 69 VENVENPDEEISLEDAISVKKRAKLGDILDLEINAESFKRNAIQNAKQIVVQKVRECEKR 128 Query: 125 MVVDQFREHEGEIITGVVKKVN-RDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 + ++F+E E I++ V+K + + N+ +D+ N EA++ +++ P +NF +RV+ + Sbjct: 129 NIFNKFKEIENSIVSANVRKTDEKGNLYIDI-NGLEAIVPFKELSPTDNFVQNERVKIYV 187 Query: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 +V + + FV+R E+L L +EVPEI E++IEIK AR+ GSRAK+AV + D+ Sbjct: 188 GNVEESTKFTKTFVSRKSEELLRGLLELEVPEIEEKIIEIKNIAREAGSRAKVAVYSEDE 247 Query: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV----D 299 +D GAC+G G R+Q + EL GE+IDIVLW+++ +FV NA+ PA+V + + + Sbjct: 248 NLDVKGACIGRNGMRIQNIIDELRGEKIDIVLWNEDIREFVKNALNPAEVLLVEIVEGEE 307 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTF 359 E+ + V L+ AIG+ GQN RLA++L G ++++ T + + + E Sbjct: 308 ENTKIAKVLVAENQLSLAIGKKGQNSRLAARLCGVKIDIHT-EPFEIEQNDEYE-----L 361 Query: 360 TKYLDIDEDFATVLVEEGFSTLEELAYVPMK 390 + + L E F ++ + Sbjct: 362 EEETAFHNSVESDLEESEFENIDNADEAEIS 392 >UniRef50_A9NF09 Transcription termination factor n=16 Tax=Acholeplasmataceae RepID=A9NF09_ACHLI Length = 358 Score = 321 bits (822), Expect = 5e-86, Method: Composition-based stats. Identities = 92/354 (25%), Positives = 186/354 (52%), Gaps = 8/354 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 ++K +E V+ + L +E++F A E L A KK+ + RV+ + + + Sbjct: 2 ISKAFFQNIEEVAEDNDLNKEQVFHAFEQGLIAACKKQLGVQT-CRVEFKEEKHELLIYG 60 Query: 61 RWLVVDE------VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 ++ V+ E + + + LE A+ +S G+ +E +IE F ++ K Sbjct: 61 QYYVLPEGELNLELDKKYTFLKLEDAKALKKSAKAGEILEVKIEPSEFSYNASRDLKHRF 120 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 174 + + + ++ + ++ + E++T V + +D +++ + ++ +++ LP + F Sbjct: 121 NEVLNQIKKENIYQGLKDLQYEMVTARVLEEEKDFYRIEINKDVITMLPKKEALPTDKFH 180 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 GDR++ + V + +G +++V+R+ ++ L VPEI + IE+ ARDPG R+ Sbjct: 181 VGDRIKVYVTDVEMKTKGPKIYVSRTHVALVTRLLEEYVPEIKDGTIEVLGIARDPGDRS 240 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 K+ +K+N++ +D +GA VG G R++ +S L GE+ID+ W DN + + N++ PA V Sbjct: 241 KVGLKSNNENVDVIGATVGEGGVRIKEISKFLSGEKIDLFRWSDNEQELIGNSLQPAPVV 300 Query: 295 SIV-VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK 347 ++ V+ + + V L+ AIG+ GQNV+LA Q SGW +++ + + Sbjct: 301 AVTRVNPKEKSALAIVPDAQLSLAIGKLGQNVKLAVQASGWSIDIKSETTAAEE 354 >UniRef50_D1AY66 NusA antitermination factor n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AY66_STRM9 Length = 362 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 187/343 (54%), Gaps = 5/343 (1%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 L +E + EK + + + E L++ L A KK + + ++ ++ID+ +GD F L+ Sbjct: 9 FLDAIEELEKEKGIQKGDLLERLKTGLLAAYKKDFNDQENLEIEIDQITGDVKMFCEKLI 68 Query: 65 VDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 +D+ V T EI A+ + + +GDY++ ++ + F+R Q AK +I+Q +RE Sbjct: 69 IDDEVKVYNETTEIPFSKAKNHRKRIKVGDYLKIELNADEFNRNAIQRAKSIIIQYIREQ 128 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E+ ++ Q E +I+ +V+++ + N + +I + ++ + + GDR+ Sbjct: 129 EKELICKQLTAIEHQIVNVIVRRIEENGSLYVGMNGLDLIIPQRELSSLDKVQVGDRLVA 188 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + SV R ++ +TR +++ +LF EVPEI +I IK AR+ G +AK+A+ + Sbjct: 189 YIRSVDTNGRFPKVDITRIDDKLIHKLFEREVPEIASGIIVIKNIAREVGVKAKVAIYSE 248 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV--D 299 D ID G+C+G G R+ + EL GE+I++V W+ + FV NA+ PA++ S+ + + Sbjct: 249 DPNIDLKGSCIGKDGVRINNIINELNGEKIELVEWNADQRIFVKNALYPAEIFSVEIVRN 308 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 ED+ + V+ L AIG+ G N +LA +L +N+ D Sbjct: 309 EDEIVAKVEVDPSQLTLAIGKKGVNSKLAGKLCKLRVNIEASD 351 >UniRef50_A6DBC4 Transcription elongation factor NusA n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBC4_9PROT Length = 356 Score = 315 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 97/355 (27%), Positives = 188/355 (52%), Gaps = 9/355 (2%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++I ++ V+NEK L E++ EA + ++ KK D+ V ++ + ++ + Sbjct: 2 EKIQDLLSLVANEKGLDFEEVKEAFKRSIIKTAKKILG---DIDVDVEMEDKKLKIYQNF 58 Query: 63 LVVDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 VV++ + +P K + L+ AR DE+ +GD + +++ R ++ +++ Sbjct: 59 TVVNDDRALNEPEKYLYLDEARDFDENAQIGDKLRAELDLSKLGRSGAMALQREFEREIT 118 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRD-NISLDLGNNAEAVILREDMLPRENFRPGDR 178 + + I++G V KV+ D N ++L + V+ R + + E F+ GD Sbjct: 119 RLLENEIYRKLISKLNTIVSGEVIKVDNDENTYVEL-DGVRGVLPRRNRIKGEKFKVGDV 177 Query: 179 VRGVLYSVR-PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 ++ +L V +G + ++R+ P+ L +L VPE+ + +I+I +AR PG R+K+A Sbjct: 178 LKALLKYVHFDNKKGITIELSRTSPKFLEKLIENAVPEVRDGLIKIHTSARIPGVRSKVA 237 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V + + +IDP+G +G G R+ A+S EL GE ID++ + P FV A++PA V S+ Sbjct: 238 VSSLNPKIDPIGTIIGKNGVRINAISNELAGENIDVIEYSPQPEIFVARALSPAIVKSVK 297 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 352 +DE + V+ A+AIG+NG N+ LAS L+ +++ + + + + E+ Sbjct: 298 IDEKNGIAYVDVDPSEKAKAIGKNGVNITLASMLTKYKIELKSQEKSTDTSKLES 352 >UniRef50_Q8EWU2 N-utilization substance protein A n=1 Tax=Mycoplasma penetrans RepID=Q8EWU2_MYCPE Length = 597 Score = 314 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 189/348 (54%), Gaps = 11/348 (3%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 K L ++ ++ EK +E I L++AL + K+ ++D+ V +D F + Sbjct: 4 KSFLENLDKIAKEKDTSKENIVNILKTALEKSYLKE-NPDLDIEVVVDLNKESIKLFEKR 62 Query: 63 LVV---DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 +VV ++ KEI + A+ +S LGD V ++ F+R T Q++ + Sbjct: 63 VVVDKSEDEIDDDKEINISEAQELKKSYKLGDTVSTEVNIDKFERRITSHFAQILTHNLN 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 + + V +++++ G II V+KV+ + ++LG + + V+LR + +P E +PG Sbjct: 123 DISNSKVYEEWKDKVGNIIRAEVEKVDNRLVEVNLG-STKGVVLRSEQIPGEELQPGQSY 181 Query: 180 RGVLYSVR-PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 ++ V+ + +G + ++R+ +L L + E+ EI + +IEIK +R G + K+A+ Sbjct: 182 LFLIKEVKSQQTKGWPIILSRADEGLLRYLLKTEISEISDGIIEIKRISRIVGYKTKVAI 241 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 + +D VG VG +G R++ +S+ L ERID++L+D++P QF++NA P + + + Sbjct: 242 LSRVPGVDAVGTAVGPKGERIKKISSTLNNERIDVILYDEDPKQFLVNACHPEKIVGVEI 301 Query: 299 DEDK-----HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 +D+ + I +L + IG+NG NVRL S+L+GW +++++ Sbjct: 302 TDDEDIPGSKIVTIVCPEESLIKLIGKNGINVRLLSKLTGWSIDIISE 349 >UniRef50_B9L7T5 Transcription termination factor NusA n=1 Tax=Nautilia profundicola AmH RepID=B9L7T5_NAUPA Length = 357 Score = 314 bits (805), Expect = 6e-84, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 187/353 (52%), Gaps = 9/353 (2%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 +++L ++ V+NEK L +++ EA + ++ KK D+ V++D ++G+ ++ + Sbjct: 2 EKVLDLLSLVANEKGLDFDEVKEAFKRSIIKTAKKVLG---DIDVEVDIENGELKIYQIF 58 Query: 63 LVVDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 V ++ + +P K L+ AR D + +GD ++ +++ R ++ +++ Sbjct: 59 EVRNDDVALEEPEKYFYLDEAREFDPNAQIGDKLKVELDLGKLGRSGAMALQREFEREIT 118 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRD-NISLDLGNNAEAVILREDMLPRENFRPGDR 178 + + I++G V KV+ + N ++L + V+ + + E F GD Sbjct: 119 RLLENEIYRKLISKLNTIVSGEVVKVDSEENTWVEL-EGVKGVLPMRNRIKGEKFEVGDV 177 Query: 179 VRGVLYSVR-PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 ++ +L V RG + ++R+ P+ L +L VPE+ + +I+I +AR PG R+K+A Sbjct: 178 MKALLKYVHFDTNRGITIELSRTNPKFLEKLIESAVPEVRDGIIKIHTSARIPGVRSKVA 237 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V + + +++P+G +G G R+ +VS EL GE ID++ + P F+ A++PA V ++ Sbjct: 238 VSSLNPKVEPIGTIIGKNGVRINSVSNELNGENIDVIEYSPKPEIFIARALSPAIVKNVQ 297 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA 350 VDEDK + V+ A+AIG+NG N+ LA L+ +++ + ++ Sbjct: 298 VDEDKALAVVEVDPDQKAKAIGKNGINITLAGMLTKYKIELKDAEEKSKDTSK 350 >UniRef50_A7I0Q5 Transcription termination factor NusA n=2 Tax=Campylobacter RepID=A7I0Q5_CAMHC Length = 366 Score = 314 bits (804), Expect = 6e-84, Method: Composition-based stats. Identities = 103/367 (28%), Positives = 185/367 (50%), Gaps = 9/367 (2%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++I ++E+++NEK L ++ E ++ A KK + ++ QID S F++ Sbjct: 2 EKITDIIESIANEKGLEEAEVSEKVKIAFIQTAKKIFGEDFVYESQIDPVSKKIKLFQKV 61 Query: 63 LVV------DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQ 116 VV + ITL+ A+ D ++ +GD + I R +Q + Sbjct: 62 SVVANDFVLKDGLNEQNFITLDKAKKIDPTIEIGDEISYDINLEKIGRTASQILFNELNY 121 Query: 117 KVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPG 176 ++ ++ + E GE++ G V V+R+ + ++ +A + ++ + E F G Sbjct: 122 HIQRLLEEKILKHYNEKIGELVHGSVTGVDREQTTYVEVDDIKAYLPMKNRIKDEKFEVG 181 Query: 177 DRVRGVLYSV-RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 D + V+ V + +G ++ ++R+ P+ L L + EVPEI + + +KA AR PG RAK Sbjct: 182 DIINAVIRHVFIDKNQGIKIELSRTSPKFLEALLKAEVPEIKDGSVILKACARIPGKRAK 241 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 IA+ IDPVGA VG +G R+ AVS EL E ID++ W + P V AM+PA S Sbjct: 242 IALSAISPNIDPVGATVGTKGVRINAVSAELKKENIDVIEWSNQPEILVARAMSPAIANS 301 Query: 296 IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA 355 + + EDK + + ++AIG++G N+RLAS L+G ++ ++ + + ++ Sbjct: 302 VKISEDK--AIVYINPAQKSKAIGKSGLNIRLASMLTGLQIELVETGESKKTNEEAMQDL 359 Query: 356 IDTFTKY 362 + F Sbjct: 360 KNLFGDL 366 >UniRef50_A6QCD2 Transcription termination factor NusA n=17 Tax=Epsilonproteobacteria RepID=A6QCD2_SULNB Length = 387 Score = 314 bits (804), Expect = 7e-84, Method: Composition-based stats. Identities = 115/385 (29%), Positives = 197/385 (51%), Gaps = 19/385 (4%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++IL +++A+++EK + RE EA + AL KK + V ID + + + Sbjct: 2 EKILDIIDAIAHEKNISREHALEAFKEALVNTAKKLTSFTSNFEVTIDNDTKTYSVQKVI 61 Query: 63 LVVDEVTQ---------PTKEI-------TLEAARYEDESLNLGDYVEDQIESVTFDRIT 106 +V + + KE+ L A+ DESL +GD + ++ + R Sbjct: 62 TIVADDDEQLFVEVGKEDNKEMIPSDAVMPLSEAKEFDESLEIGDKLTEEFVLEDYGRTA 121 Query: 107 TQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVN-RDNISLDLGNNAEAVILRE 165 + + + ++ + +++RE G ++ G V +++ DN +++G + ++ Sbjct: 122 SANLFRELEYHIQRRIEQDLFEKYREKVGTVMLGTVNRIDADDNTHVEIGE-LKGILTLR 180 Query: 166 DMLPRENFRPGDRVRGVLYSVRPEAR-GAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIK 224 + + E F+ GD +R +L V + + G L +TR+ P+ L L EVPEI + V+EI Sbjct: 181 NRIKGEKFKRGDTIRALLRYVSVDPQYGLFLELTRTSPKFLEALMASEVPEIADGVVEIV 240 Query: 225 AAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFV 284 AAR PG RAKIA+KT +DP+GA VG++G R+ AVS EL GE ID + + P F+ Sbjct: 241 NAARIPGERAKIALKTEQMNVDPIGAAVGVKGVRINAVSEELNGENIDCIEYSPIPEIFI 300 Query: 285 INAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDL 344 A++PA SI VD+D+ + + A+AIG++G N+RLAS L+G+ + + V+ + Sbjct: 301 TRALSPAITQSIKVDQDEKKAVVNITGDQKAKAIGKSGINIRLASMLTGYTIELNEVEGV 360 Query: 345 QAKHQAEAHAAIDTFTKYLDIDEDF 369 + A TK ED Sbjct: 361 TERQPESAAGGEAEKTKDTSALEDL 385 >UniRef50_B1VGB9 N utilization substance protein A n=2 Tax=Corynebacterium RepID=B1VGB9_CORU7 Length = 332 Score = 313 bits (803), Expect = 1e-83, Method: Composition-based stats. Identities = 107/352 (30%), Positives = 187/352 (53%), Gaps = 32/352 (9%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN + LA + A+ ++ +P +++ A+ + L A + + +V VQID SG ++ Sbjct: 1 MNID-LATLRAIERQEGVPVDELIHAIANGLKEAYRNQSAFAGEVDVQIDPTSGAVAIYQ 59 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 DE N+ +++ FDR T ++ I +++ Sbjct: 60 V--------------------ERDEEGNVTGRLDE--TPENFDRTTALAMREAIRRRIGG 97 Query: 121 AERAMVVDQFREHEGEIITGVVKKV----NRDNISLDLGNNAEAV---ILREDMLPRENF 173 A D++ I++GVV + R + +G A+ + IL + +P E Sbjct: 98 ARVQQRYDEYSSIRHTIVSGVVTRDARANERGITVVHIGTEADGIDGQILPAEHIPGEVL 157 Query: 174 RPGDRVRGVLYSV-RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 232 + G RV+ + V + R Q+ ++R+ PE++ LF +EVPE+ + +EI + AR+ G Sbjct: 158 KHGTRVKAFVTDVIKHADRNVQISLSRTHPELVRGLFELEVPEVADGSVEIMSIAREAGH 217 Query: 233 RAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPAD 292 R KIAV+ K ++ GAC+G RG RV A+ ELGGE+IDI+ + D+PAQ+V NA++P+ Sbjct: 218 RTKIAVRATIKGLNAKGACIGPRGQRVSAIMAELGGEKIDIIDYSDDPAQYVGNALSPSK 277 Query: 293 -VASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDD 343 V+S V+D ++ + V L+ AIGR GQNVRLA++L+ W++++ + + Sbjct: 278 YVSSTVIDAEQQIARVVVPDYQLSLAIGREGQNVRLAARLTCWKIDIKSDAE 329 >UniRef50_A8ERE7 Transcription termination factor NusA n=15 Tax=Epsilonproteobacteria RepID=A8ERE7_ARCB4 Length = 391 Score = 310 bits (794), Expect = 8e-83, Method: Composition-based stats. Identities = 99/377 (26%), Positives = 202/377 (53%), Gaps = 23/377 (6%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 +I+ ++++++ EK L + + +L+ AL ++ + + IDR + + F++ Sbjct: 3 KIIDILDSIAYEKGLKIDDVENSLKEALIKTAQRMVDTTLIFDANIDRANKKLELFQKIE 62 Query: 64 VVDEVTQ---------------PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQ 108 VV + P I+LE A+ + L++GD++ ++E R Sbjct: 63 VVSKDDDRLKEGSLTKEGTPINPENYISLEEAKEINSDLDIGDFMSYELEFENMGRNAAT 122 Query: 109 TAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNR-DNISLDLGNNAEAVILREDM 167 +++ +V +++E G+ ++G V ++++ DN +++G + ++ R+ Sbjct: 123 ILLSNFEFRLQRFVEENIVGKYKEKVGKTVSGTVTRIDKSDNTYIEIGE-IKGILQRKSR 181 Query: 168 LPRENFRPGDRVRGVLYSVR-PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 + E F+ GD V+ V+ SV + G + ++R+ P+ L L +EVPE+ ++ I I+A+ Sbjct: 182 IKGEFFKVGDVVKAVVKSVNIDKTNGLLVEISRTSPKFLENLLVLEVPELKDKKIAIEAS 241 Query: 227 ARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVIN 286 AR PG+R+KIA+ T D +IDP+GA VG++G R+ +VS +L GE ID V + + P F+ Sbjct: 242 ARIPGTRSKIALSTIDAQIDPIGAVVGVKGVRIGSVSKQLNGENIDCVEYSEIPEIFISR 301 Query: 287 AMAPADVASIVVDE-----DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 A++PA V S+ +++ +K + + + ++AIG+ G N+RLAS L+ +++ ++ + Sbjct: 302 ALSPAIVHSVKIEKNPENGEKGKAVVTIPSDQKSKAIGKAGLNIRLASMLTKYDIELIEI 361 Query: 342 DDLQAKHQAEAHAAIDT 358 E + +D Sbjct: 362 GSKTPTLNNETNVQVDE 378 >UniRef50_Q83N21 N utilization substance protein A n=2 Tax=Tropheryma whipplei RepID=Q83N21_TROWT Length = 319 Score = 304 bits (778), Expect = 7e-81, Method: Composition-based stats. Identities = 98/341 (28%), Positives = 175/341 (51%), Gaps = 32/341 (9%) Query: 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID--VRVQIDRKSGDFDTFRRWL 63 L+V+ AV E+ + + + E A+ A + E V+ +++RK+G+ D + Sbjct: 7 LSVLRAVEREQRVAFDDLVRIAEQAVVMAYLRHTGLEDADLVKAKLNRKTGEIDLRVKHD 66 Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 GD++ +S F R+ AK+VI K+R Sbjct: 67 --------------------------GDFI--PYKSDAFSRMAATAAKRVITSKMRTLSD 98 Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNI-SLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 +++ G +++GV+ + N + L EA++ E+ +P E + G V+ Sbjct: 99 DSTFARYKTKIGTVLSGVISQSTSQNFRMVSLDRRTEAILRPEEQIPGEEYPHGKMVKVY 158 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND 242 + V RG+ ++V+R+ P ++ LF EVPEI +EI A +R+ G R K++V++N Sbjct: 159 VTDVTLGPRGSNVYVSRTHPGLINGLFLQEVPEIASGTVEIVAVSREAGHRTKVSVRSNS 218 Query: 243 KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDED 301 K VGACVG G RV+AV++E+ E+IDI+ + D+ Q+V NA++PA A + V+D Sbjct: 219 KSTSAVGACVGEYGCRVRAVTSEICNEKIDIISYSDDLGQYVANAISPATAADVFVLDSR 278 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 + + + V + AIG+ GQN RLA++L+G ++++ + Sbjct: 279 QKVVRVYVSKEEYSLAIGKEGQNARLAARLTGAKIDIRIDE 319 >UniRef50_C3XEZ2 Transcription termination factor NusA n=2 Tax=Helicobacter RepID=C3XEZ2_9HELI Length = 384 Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 109/374 (29%), Positives = 198/374 (52%), Gaps = 11/374 (2%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++IL +VE +++E LP++++ A++ ++ KK+ + + V D + + ++ Sbjct: 2 EKILDIVEMIASENGLPQDQVVLAIKDSMVKMAKKEINENANFVVIEDWSAKELRLVQKM 61 Query: 63 LVVDEV----TQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118 +V D+ + I L AR E++N GD +E QI +R I ++ Sbjct: 62 IVCDDSSFSKDLESTHIPLNEARSLVENVNTGDELEYQINLEGMNRNAVNNIFHDITYQI 121 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNR-DNISLDLGNNAEAVILREDMLPRENFRPGD 177 ++ ++ F + G I+ G V V+ N S+++G A++ ++ + E F+ G Sbjct: 122 QKLNEQEILKAFEKDIGHIVIGQVVHVDDEGNTSIEIGE-TRAILSLKNRIKGEKFKVGQ 180 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 VR +L SVR G ++ ++R+ P++L EL +EVPEI + + I AR PG +AK+A Sbjct: 181 PVRSILKSVRITKNGVKIELSRTTPKLLEELLMLEVPEIKDGEVSIYKIARIPGEKAKVA 240 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 + TN+ +IDP+G+ VG RG R+ AVS EL GE ID + + P FV +++PA V S+ Sbjct: 241 LYTNNPKIDPIGSAVGARGVRINAVSKELHGENIDCIEYSSVPEIFVAKSLSPAQVISVK 300 Query: 298 V-----DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 352 + +E+K + + ++AIG+ G N+RLAS L+G++ + V D ++ Sbjct: 301 LQKADTEEEKPKAIVQIAKSQKSKAIGKAGVNIRLASMLTGYDFELQEVADKPSEQITTK 360 Query: 353 HAAIDTFTKYLDID 366 + K L ++ Sbjct: 361 DSTEKDEDKKLGLE 374 >UniRef50_Q3B1Z7 NusA antitermination factor n=12 Tax=Chlorobiaceae RepID=Q3B1Z7_PELLD Length = 553 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 116/398 (29%), Positives = 199/398 (50%), Gaps = 28/398 (7%) Query: 22 KIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAAR 81 I + L+ + +K Y+ E++ + I+ + GDF+ + +V+EV EI+LE R Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDIAPIEISLEEIR 102 Query: 82 YEDESLNLGDYVED-QIESVT-FDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIIT 139 DESL +GDY E+ I+ R + Q KQ + +KVR+ ER +V ++ E GE+I Sbjct: 103 RIDESLEVGDYYEEGPIKLDDYLTRKSIQIIKQSVQKKVRDLERMVVYEECLEKVGEVIA 162 Query: 140 GVVKKVNRDNISLDLG----NNAEAVILREDMLPRENFRPGDRVRGVLYSVRPE------ 189 V +V + + + E V+ + +M+ ++N R R++ + ++ E Sbjct: 163 AEVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKNIERERVKVRL 222 Query: 190 -----------ARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 G ++ V+R L +LF EVPEI + +I IK AR PG RAK+AV Sbjct: 223 DDGTMEEKEKADGGMKVIVSRVDDRFLYKLFEQEVPEILDGLIVIKGIARVPGERAKVAV 282 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA--SI 296 ++ RIDPVGA VG RG R+Q++ EL E ID++ + D P ++ A+ PA + ++ Sbjct: 283 ESTSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYSDEPQVYISRALQPAKIDPLTV 342 Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356 D + ++ + AIG+NG N+ LA +L+G+E++V E I Sbjct: 343 HADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRDV---IDRSMEDPTDI 399 Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLE 394 D + +D L++ G T ++ ++E+ + Sbjct: 400 DIIEFREEFGDDMIYQLLDAGLDTAKKALKAGVEEIEQ 437 >UniRef50_Q7VGP8 Transcription termination factor NusA n=1 Tax=Helicobacter hepaticus RepID=Q7VGP8_HELHP Length = 375 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 98/358 (27%), Positives = 184/358 (51%), Gaps = 12/358 (3%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++IL +++ ++ +K L + + E ++ L +++ D V+ D K F R Sbjct: 2 EKILDIIDLIAYDKGLESQAVLEIVKEGLIKIAQEEINPHYDYFVEQDAKERTLKLFYRM 61 Query: 63 LVVDEVTQPTKE-----ITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 V + ++E + L A+ +++GD V+ +++ R + Sbjct: 62 KVCADEQDLSEENLGTFLPLSQAKGLG-DVSIGDEVDCELQLDAMSRGAINKLFLNLEYN 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNR-DNISLDLGNNAEAVILREDMLPRENFRPG 176 ++ + ++ FR G+I+ G V ++ N +++ + A++ +++ + ENF+ G Sbjct: 121 LQRSIENQILQNFRAMVGKIVNGQVVGIDDSGNTFIEI-ESIRAILPQKNRIKGENFKVG 179 Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 D VR +L V G Q+ ++R+ P+ L EL +EVPEI + + I +AR PG RAK+ Sbjct: 180 DCVRAILKFVGINRNGLQVELSRTTPKFLEELLAMEVPEIKDNEVIIHKSARIPGDRAKV 239 Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296 AV +N RIDP+G CVG++G R+ AVS EL E ID V + FV A+ PA V S+ Sbjct: 240 AVYSNSARIDPIGCCVGVKGVRINAVSKELANENIDCVEYHSTLEIFVAKALTPAQVVSV 299 Query: 297 VVDE----DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA 350 ++E ++ + +++ ++AIG+NG N+RLAS L ++ + + + + Sbjct: 300 KIEEAQEGERKKAIVQIKSEQKSKAIGKNGVNIRLASMLCECDIELQEITESKPLENE 357 >UniRef50_P75591 Transcription elongation protein nusA n=2 Tax=Mycoplasma RepID=NUSA_MYCPN Length = 540 Score = 290 bits (744), Expect = 7e-77, Method: Composition-based stats. Identities = 92/359 (25%), Positives = 170/359 (47%), Gaps = 15/359 (4%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 +L +++ V+ K L + + L++ALA KK ++V V ID G + + V Sbjct: 12 LLQLIKNVAETKNLAIDDVVLCLKTALAQTYKKHLN-YVNVEVNIDFNKGLMQIEQLFDV 70 Query: 65 VDEVT---QPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VD+ E+ L A+ + +L +G + + + QK+ E Sbjct: 71 VDDNNEDYDDFLEMPLSEAKKLNPNLEVGGVLRKPVSLKDIKGDLISKMVLLFNQKINET 130 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRD------NISLDLGNNAEAVILREDMLPRENFRP 175 V+ F G++I V+ ++ + ++L + + + ++ E Sbjct: 131 AFKTVMSDFINEVGQVIEARVEDIDTNKDGGLKGYIVNL-ETTKGYMPKRELSKGEKLDI 189 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 G + V+ ++ ++ + ++RS +L L PEI IEIK R PG+++K Sbjct: 190 GKKYLFVIKEIQKQSSMWPITLSRSDSRLLEFLLNSNTPEIANGTIEIKKMERSPGTKSK 249 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 +AV + D +DP+ A +G +G R++ +S E GE IDIV+W+++ +F++NA+ PA+V Sbjct: 250 VAVISKDPVVDPIAAILGPKGERIRGISEEFNGEIIDIVIWNEDKLKFLVNAVLPAEVVG 309 Query: 296 IVV---DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW-ELNVMTVDDLQAKHQA 350 + DE +++I V A +A G G N+RL S L+GW ++V T D + Sbjct: 310 YNILQDDERDTSIEIVVPANQIANVFGFKGINIRLISNLTGWSSVDVYTEKDAAEQGIE 368 >UniRef50_Q7NBZ6 NusA-homolog n=1 Tax=Mycoplasma gallisepticum RepID=Q7NBZ6_MYCGA Length = 625 Score = 287 bits (734), Expect = 8e-76, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 169/366 (46%), Gaps = 21/366 (5%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 NK L ++ V+ K + +++I L+ A+ A K+ + + + V ID G F+ Sbjct: 6 NKSFLEAIQTVAETKNISKKEISTILKDAIIRACAKE-DPDQRIDVMIDFDMGLLKIFKL 64 Query: 62 WLVV-----DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQ 116 + V+ +E EI L+ A + ++ +GD + F R+ Q Q Sbjct: 65 YKVIDDSVSEEEFDEINEIHLKDALATNPTIKVGDDFLKSLSIGDFSRVVATNISQYFRQ 124 Query: 117 KVREAERAMVVDQFREHEGEIITGVVKKVNRDN--ISLDLGNNAEAVILREDMLPRENFR 174 K+ E V ++ +I+ G V+K + + ++LG A + D +P E + Sbjct: 125 KLSELVNKQAVSEWTPKLNKIVRGTVEKDENNPNVLLVNLG-GIYAYYYKRDWVPNEELQ 183 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 VL ++ +++ L V+RS + + +PEI E ++EIKA R G + Sbjct: 184 NDVEYDFVLTQIKEQSKSWPLIVSRSDALYVKHVLTENIPEIKEGIVEIKAIQRVAGQKT 243 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTEL---------GGERIDIVLWDDNPAQFVI 285 K+AV +N+ IDPV +G G R+++++ L E ID+ W+D+ + + Sbjct: 244 KVAVLSNNPDIDPVTLILGDGGIRIKSIAANLIEHSSGVKVSNEVIDVFHWNDDVFKLIA 303 Query: 286 NAMAPADVASIVVDED---KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 NA P D+ + V ED ++DI VE L IGR G NVRL S ++GW ++ + Sbjct: 304 NACYPVDIIGVDVLEDSERDKSVDIIVEDQYLPFLIGRAGINVRLLSYMTGWSIDFKSQS 363 Query: 343 DLQAKH 348 + Sbjct: 364 AAIEDN 369 >UniRef50_D1J8W2 Transcription elongation protein NusA n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8W2_MYCHP Length = 546 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 104/462 (22%), Positives = 204/462 (44%), Gaps = 31/462 (6%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 KEI + +S K + + ++ EA ++ + + Y++E D+ D+++ +F Sbjct: 23 KEIYKQIYNLSQIKKIDQAEVVEAFKNTVTKLITETYDEEADLEFIFDQENDNFAIINHN 82 Query: 63 LVVDEVTQPTK-----------EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAK 111 VV V P EI L A+ D ++ +GD + +I F + Sbjct: 83 KVV--VGDPITSEEKDRLTRCIEIPLSDAKKIDPNVEIGDSLSQEINFEYFSKKDYNKIL 140 Query: 112 QVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRE--DMLP 169 Q ++ ER M +++ G + VN+ ++L+L + A + + Sbjct: 141 ANFSQDIKNLERKMTCEKYASEVGNSTKAKIVSVNKGKVNLELRDGTLAFMPSNFVNQRI 200 Query: 170 RENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARD 229 PGD + V+ V+ E AQ+ V+ + +L +LF IE+PEI + +I I AR Sbjct: 201 ISKLNPGDWIDVVIEEVKEENSNAQIIVSSVESRLLQKLFEIEIPEISQGLISIVNIARI 260 Query: 230 PGSRAKIAVKTND---KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVIN 286 PG RAK+++K ++ + ++ +GA +G R+ +S +L GE+ID+VL+ D+ +++ N Sbjct: 261 PGERAKVSIKKSNDAPETMEEIGAIMGRDSERISTISRKLNGEKIDVVLYSDDIKEYIKN 320 Query: 287 AMAPADVASIVVDEDKH---TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDD 343 A++PA V ++ K+ + ++ V AIG+ GQNV LAS+L +L++++ + Sbjct: 321 ALSPAKVIDLIEVPSKNSYPSFNVIVPTIQHTLAIGKKGQNVSLASELVKAKLDILSQEQ 380 Query: 344 LQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPM-------KELLEIE 396 + + + +++ E + F + + + I+ Sbjct: 381 ADERGIEYNFENGNITKEEIELLESGKKL--HHSFKHPKTIGNKNATNKFNTFENSFNID 438 Query: 397 GLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLE 438 DE +R +A+ + + D L L Sbjct: 439 EFDEDLA-EMRRKAQQNDNIFERQMFSNSLDEDLERTLSELN 479 >UniRef50_Q9ZJA6 Transcription elongation protein nusA n=16 Tax=Helicobacter RepID=NUSA_HELPJ Length = 395 Score = 284 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 182/367 (49%), Gaps = 30/367 (8%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++I ++E ++ EK LP+E I + ++ L + + + V ++ + Sbjct: 2 EKISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLV 59 Query: 63 LVVDE-----VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 V+++ V P+K I+L A+ D S+ + D + + + + + + + Sbjct: 60 EVLEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQ 119 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRD-NISLDLGNNAEAVILREDMLPRENFRPG 176 + +A + F++ ++ G V V+ + N +++ + V+ + E+F+ G Sbjct: 120 LEKALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKIG 179 Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 D ++ VL V+ +G L ++R+ P+ML L +EVPEI ++ IEI AR PG+RAK+ Sbjct: 180 DSIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKV 239 Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296 + +++ RIDP+GA VG++G R+ A+S EL E ID + + + P ++ A+APA + S+ Sbjct: 240 SFFSHNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSV 299 Query: 297 VVD---------EDKH-------------TMDIAVEAGNLAQAIGRNGQNVRLASQLSGW 334 + E+K + + ++AIG+ G NV LAS L+G+ Sbjct: 300 EIKKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGY 359 Query: 335 ELNVMTV 341 + T+ Sbjct: 360 HIEFETI 366 >UniRef50_B3PNC2 Transcription elongation factor NusA n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PNC2_MYCA5 Length = 524 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 95/361 (26%), Positives = 172/361 (47%), Gaps = 20/361 (5%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR-- 60 KEI + +S K L ++ E + A+ Y+++ ++ D ++ +F Sbjct: 13 KEIFKAINDLSKLKNLNTNEVIELFKDAVKKVIM-SYDEDAELEFVFDEENNEFIVINHT 71 Query: 61 RWLVVDEVTQPTK-------EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV 113 +++V D +T K E+ L A+ + GD + + I TF + Q Sbjct: 72 KYVVQDPITAEDKDMLCRCIEVPLSIAKELKSTAKEGDVISETINFETFQKKDYIRILQS 131 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRE--DMLPRE 171 Q +RE E+ ++V + G+I+ V I +L + A + + Sbjct: 132 FNQSIRELEKKVIVGVYSLKIGQIVRAKVATPTTRGIFFELEDGTPAYMPSNANNRKLTA 191 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 N +PGD + + +V + Q+ V+ + +++ +L EVPEI +I+I AR PG Sbjct: 192 NLQPGDSIDVYIDNVGDADKNVQVLVSTVESKLIDKLLYKEVPEIANGLIDIVKIARIPG 251 Query: 232 SRAKIAVKTNDK---RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM 288 RAKIA+ N+K ++ VG+ +G G+R+ V +L GER+D++ + + F+ NA+ Sbjct: 252 ERAKIAISANEKTPIGVEVVGSVLGENGSRINNVIQQLKGERLDVIEYSADIKTFIKNAI 311 Query: 289 APADVASIVVDEDKHTMD-----IAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDD 343 +PA V IV +++K + + V + AIG+ GQNV LAS L +L++ + D Sbjct: 312 SPAKVIDIVENKEKWQANYPAYIVVVPNQHNTLAIGKRGQNVVLASDLVRAKLDIFSQDQ 371 Query: 344 L 344 Sbjct: 372 A 372 >UniRef50_Q6KIE0 N-utilization substance protein a n=1 Tax=Mycoplasma mobile RepID=Q6KIE0_MYCMO Length = 514 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 188/367 (51%), Gaps = 22/367 (5%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDR-KSGD--FDTF 59 K+ +V + + L ++++ + L +A+ ++ + + I++ ++G+ + Sbjct: 15 KDFFELVGSRA---DLSQKEVMDTLLNAITLIFNNDFDPNAKLDLVIEKSETGESKIKLY 71 Query: 60 RRWLVVDEVTQPTKE----ITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 +V + +E + +E A+ + SL + +D+I +F + V Sbjct: 72 ILNKLVTDYDVEEEEKYYSMNVENAKKINPSLEVNMTFKDEIPFESFSPSIFKKIYNVFT 131 Query: 116 QKVREAERAMVVDQFREHEGEIIT----GVVKKVNRDNISLDLGNN---AEAVILREDML 168 Q ++E + ++ ++ +G+II G+ NR +SL L N EA + + Sbjct: 132 QSMKEFSKEYLISKYGNLKGQIIRMKIEGINITNNRRMVSLKLENENGSIEAFMPDKLQN 191 Query: 169 PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAAR 228 P GD V + V+P++RG ++ V+ + E+L +L +E+PEI I I A R Sbjct: 192 PNIEMVIGDYVEVYVEDVKPDSRGLRVIVSNTSNEILKKLLELEIPEIASGNIVINAIKR 251 Query: 229 DPGSRAKIAVKTND---KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVI 285 PG R+KIAV IDP+GA VG +G+R+ +S LGGE+ID++L+D N +F+I Sbjct: 252 IPGIRSKIAVSKTSFAPDGIDPMGAIVGQKGSRINKISDRLGGEKIDVILFDTNLEKFII 311 Query: 286 NAMAPADVASI--VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDD 343 N+++PA VA I + DE + + V + +AIG+ GQNV+LA+ L+ L++++V Sbjct: 312 NSISPASVAHISKINDEANNHFLVVVPDLDNTKAIGKAGQNVKLAAGLTETRLDILSVTQ 371 Query: 344 LQAKHQA 350 + K Sbjct: 372 AKEKGIE 378 >UniRef50_B4U6H2 NusA antitermination factor n=3 Tax=Aquificaceae RepID=B4U6H2_HYDS0 Length = 322 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 100/345 (28%), Positives = 186/345 (53%), Gaps = 31/345 (8%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M K I ++E V+ EK +P + + AL++A+A +K+ + I ++ ID Sbjct: 1 MVKNIKKLIENVAKEKDIPAKIVEIALKNAIAYGIRKE--KHIRGKIYIDFA-------- 50 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 D+ T I+ D I + +RI AK+ ++++ Sbjct: 51 -----DDDTITAYIISGREKTKLD------------ISTEDLNRIAAYAAKEEFLKELEN 93 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNI-SLDLGNNAEAVILREDMLPRENFRPGDRV 179 AER ++ EG I+ G+V+++ +D +DLG +A + R + + +E+F+ DRV Sbjct: 94 AERERGFLEYVSQEGNIVHGIVREITKDQTAIVDLGP-IDAELPRREQISKESFKKNDRV 152 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 + +L+SV+ E L ++R+ P+ L L E+PE+ +++I + AR+PG +AK+ V Sbjct: 153 KALLFSVQKERGRPVLLLSRTHPKFLRRLLEAEIPEVATGLVKIISVAREPGEKAKVVVD 212 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 T DK+IDPVG +G++G+++ +S EL GE ID+V + + +F+ N PA + + Sbjct: 213 TEDKKIDPVGVVIGIKGSKINPISKELAGEHIDVVRYSKDKKKFLENLFFPAKILDVR-- 270 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDL 344 E + +++AV+ ++ AIG+ G N +LA ++ G ++VM+ +D Sbjct: 271 ESDNQIEVAVDKDQISLAIGKRGINTKLAYKILGKHIDVMSKEDF 315 >UniRef50_B5Y929 Transcription termination factor NusA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y929_COPPD Length = 343 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 96/345 (27%), Positives = 178/345 (51%), Gaps = 25/345 (7%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYE---QEIDVRVQIDRKSGDFDTF 59 K + + ++++ L ++I EAL+ AL +A +K+ + + + ++I+ Sbjct: 11 KALNEYIRQIASDLDLTPQEIIEALKDALVSAIRKELDIPKEAVGSAIKIEENGSSLKFL 70 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 V K I + A + D++E + R++ QTA+ + ++ Sbjct: 71 VNKDFV-------KTIPEDEA--------VSDWIEFPL--SNLSRVSIQTAENTLKNRMN 113 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDN--ISLDLGNNAEAVILREDMLPRENFRPGD 177 E + + + + GE++T V + + I +D+ + E V+ + LP + + PGD Sbjct: 114 EKSKEKAIKRIAQFSGEVVTARVIRRDPKTKLIYMDV-DGVECVLEPSEQLPTDRYAPGD 172 Query: 178 RVRGVLYSVRPEA-RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 +R ++ + G + ++RS P++L LF +EVPE+ + V+ I AR PG R+K+ Sbjct: 173 SLRCLVLGAKNIPMYGQGVALSRSSPDLLKLLFTLEVPEVADGVVRIMGIARKPGRRSKV 232 Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296 AV + D R+DP GAC+G +G R+QA+S L E+ID+V WD +PA+ + N ++P V + Sbjct: 233 AVMSIDPRLDPQGACIGYKGQRIQAISRSLANEKIDVVRWDTDPAKLIANVLSPGKVDKV 292 Query: 297 -VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 V+D + N+ +G +G+NV LA QL+GW ++V Sbjct: 293 EVLDPKNKRALVYTTPDNIKVVVGEDGENVELAEQLTGWTIDVRE 337 >UniRef50_B5ZBC7 Transcription termination factor NusA n=15 Tax=Ureaplasma RepID=B5ZBC7_UREU1 Length = 458 Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats. Identities = 101/454 (22%), Positives = 199/454 (43%), Gaps = 38/454 (8%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 +KE + + + + + E + ++ A + + E + I+ K G + FR Sbjct: 7 SKEFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRTHPGE-NFETNINLKEGTINCFRN 65 Query: 62 WLVVDEVT----------QPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAK 111 +VV+ EI L+ AR + + +GD ++ I F I Sbjct: 66 LVVVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYISIDDFKSIEVGQIG 125 Query: 112 QVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDN---------ISLDLGNNAEAVI 162 ++ QK+ E V D ++ ++I V ++N + + LD + Sbjct: 126 SLLRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYL 185 Query: 163 LREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIE 222 R+D + E F+ G+ ++ V+ ++R + ++R++PE++ E+ + EV +I IE Sbjct: 186 SRKDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIE 245 Query: 223 IKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQ 282 IK AR G + K+AV TN I+PV VG +G + ++S +L ERID++ + D+ Sbjct: 246 IKKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRI 305 Query: 283 FVINAMAPADVASIVVDE---DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 F+ NA+ + ++V E D+ + V +L IGR G N+RL ++++ W ++V Sbjct: 306 FIANAIGLDKLKGLLVQENESDQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDVK 365 Query: 340 TVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLD 399 T++ F + + ++ + ++ + + L I+ + Sbjct: 366 TIE--------------QAFEENVVYEKFDEKIYRSWNIESINKKNVTNDEMLALIDNMQ 411 Query: 400 EPTVEALRERAKNALATIAQAQEESLGDNKPADD 433 + VE E+ K+ L + S D+ DD Sbjct: 412 DEKVEK-TEQVKDQLKQQEKQTIVSNNDDSENDD 444 >UniRef50_D2SDW8 NusA domain protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SDW8_9ACTO Length = 524 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 131/248 (52%), Gaps = 28/248 (11%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN ++ ++AV EK +P + + EA+E+AL TA + VRV +DRK+G+ Sbjct: 1 MNIDV-TALKAVEREKGIPADTVIEAIETALVTAYRHADGASKHVRVHVDRKTGEVAVL- 58 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 A+ + +D F RI TAKQVIVQ++R+ Sbjct: 59 -------------------AQELGPDGEVVREWDD--TPSDFGRIAASTAKQVIVQRLRD 97 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDN----ISLDLGNNAEAVILREDMLPRENFRPG 176 AE ++ EG+I++G+V+ R N + +D+G EAV+ + +P E++ G Sbjct: 98 AEHEQTFGEYAGKEGDIVSGIVQADQRRNASGTVLVDIGK-VEAVLPAAEQVPGESYPHG 156 Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 R+R + SV RG Q+ V+R+ P ++ +LF +EVPEI + +EI A AR+ G R+KI Sbjct: 157 SRLRAYVVSVARTYRGPQVTVSRTHPNLVRKLFALEVPEIADGSVEIVAVAREAGHRSKI 216 Query: 237 AVKTNDKR 244 AV+T+ R Sbjct: 217 AVRTSVPR 224 >UniRef50_Q4A7E0 N-utilization substance protein A n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4A7E0_MYCH7 Length = 614 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 75/368 (20%), Positives = 161/368 (43%), Gaps = 19/368 (5%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 I+ ++ V+ L E + + + A+ KK + + ++++ D + F F + Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79 Query: 65 V------------DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQ 112 V ++V I L A+ D + + D +I +F+ Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139 Query: 113 VIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPREN 172 QK+ E R V +++ + ++ V ++ ++ + + +N Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 199 Query: 173 FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 232 + G + V+ +V + +Q+ ++ +++ + +PE+ + +EI + AR PG Sbjct: 200 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 259 Query: 233 RAKIAVKTND----KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM 288 R K+A++ + I +G+ VG G+RV A+S EL GE+I+++ +DDN +F++NAM Sbjct: 260 RCKVAIRRTEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 319 Query: 289 APADVASI---VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ 345 +P+ V + + I V + AIG+NG NV+L + L+ ++ ++ Sbjct: 320 SPSKVICVKEFKIGHKLRRFIIVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 379 Query: 346 AKHQAEAH 353 + Sbjct: 380 KDQNFKIE 387 >UniRef50_C7LKE4 Transcription elongation factor NusA n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKE4_SULMS Length = 342 Score = 263 bits (674), Expect = 7e-69, Method: Composition-based stats. Identities = 88/320 (27%), Positives = 174/320 (54%), Gaps = 2/320 (0%) Query: 24 FEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV--DEVTQPTKEITLEAAR 81 ++ + KKKY + + ++ + K+G+ + +R +V + + K+I + A Sbjct: 19 MSIIKKSFIFFLKKKYGKLKNYKIFFNYKNGEIEIWRDLKIVSDEIIKNFNKQIEISKAI 78 Query: 82 YEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGV 141 ++L +GD ++++IE + + K+ + K ++ +R + ++ GEII Sbjct: 79 KIKKNLKIGDSLKEKIEYQQLGKKFLFSLKKDLFYKFKKFDRKNQLQILKKKIGEIIYAK 138 Query: 142 VKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSK 201 V + DNI N + ++L+E+ +P E F+ G+ ++ V+ LF++R Sbjct: 139 VDYIINDNIFFKNNENNKMILLKEEQIPNEKFKKGNSFFLLIKKVKFIKNKIYLFLSRKD 198 Query: 202 PEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQA 261 L +L +E+PEI +I IK R G R+KIA+K+ +K IDP+G CVG++G++++ Sbjct: 199 KNFLKKLLELEIPEISNGLIIIKKIVRIAGERSKIAIKSKNKTIDPIGTCVGLKGSKLKN 258 Query: 262 VSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRN 321 + E+ E IDI+ + N ++ +++PA VA I +D K I+V + + +AIG Sbjct: 259 IIKEINNEIIDIINYSSNIELYLTRSISPAKVAMIKIDRKKKLAFISVNSEEIKKAIGNK 318 Query: 322 GQNVRLASQLSGWELNVMTV 341 N+RLAS+L+G+++ ++ + Sbjct: 319 KTNLRLASKLTGYKIYILNI 338 >UniRef50_Q4A579 N-utilization substance protein A n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A579_MYCS5 Length = 560 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 81/361 (22%), Positives = 163/361 (45%), Gaps = 16/361 (4%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 +K+ ++ + S K + ++ + + +K + E +V +D + + + Sbjct: 16 SKKWFLLLNSFSKNKEISNDEFIAMSQEVINHIINRKLDPEAEVVFSVDNEKEEILLLNK 75 Query: 62 W-LVVDEVTQP-------TKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV 113 VV++ I L A+ +++ +GD + IE +FD+ + Sbjct: 76 NTEVVEDSEAAMYDELLGISYIGLSKAKEVNKNAKVGDLISYPIEFNSFDQKNLVAMRNG 135 Query: 114 IVQKVREAERAMVVDQFREHEG-EIITGVVKKVNRDNISLDLGNNAEAVILREDMLPREN 172 + E + + ++ G +++ + K L L + A + + ++ Sbjct: 136 FSAAIAEKAKNRLFAKYHPLIGSKLMVQIASKHENGGFFLKLEDGTSAYLPKNSIIKSVE 195 Query: 173 FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 232 PG + L SV +A+G L VT + PE + ++ E+PEI + I+ R PG Sbjct: 196 LNPGQKFDVFLNSVNIDAKGLYLEVTMTSPEQVRDVLFREIPEIANGDLIIRNIQRIPGE 255 Query: 233 RAKIAVKTNDKR-----IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINA 287 R+K+ V N ++ D +GA G + R+ VS L E+ID++ + +NP F+ NA Sbjct: 256 RSKVVVSLNPEKQSAHTHDLLGAMFGNKAQRINDVSKSLNNEKIDVIRFAENPKDFIRNA 315 Query: 288 MAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK 347 M+P V +V + K + V +++ AIG NG NV LAS+++ +++V++ + + Sbjct: 316 MSPCPVVDVV--KSKKGFYVIVRPEDVSLAIGSNGVNVSLASKVTNNKIDVLSTEQAFQE 373 Query: 348 H 348 Sbjct: 374 K 374 >UniRef50_Q0EZ71 Transcription elongation factor NusA n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ71_9PROT Length = 235 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 100/236 (42%), Positives = 144/236 (61%), Gaps = 2/236 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E+L V +AV+ EK++ RE + EA+E AL TA ++ Y ++V +IDR +G+ F Sbjct: 1 MNVEMLQVADAVAREKSVDRELVLEAMEQALKTAARRTY-PGLNVEAEIDRDTGEIRLFH 59 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + V+EV E+T+E A+ + LG + + RI QTAKQVI QK+RE Sbjct: 60 VRVAVEEVEDQDNELTVEEAQALRDDAVLGSEFRTALAPIELGRIAAQTAKQVINQKIRE 119 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER V+ ++ GE+ITG+VK+V R N+ +DLG EAV+ RED+LPRE FR GDRVR Sbjct: 120 AERERVIAEYEPRVGELITGIVKRVERGNVYVDLGRG-EAVMYREDLLPRETFRQGDRVR 178 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 L VR + +G +FV+RS M++ LF EVPEI + + I+ P A++ Sbjct: 179 AYLREVRNQPKGPVVFVSRSDAGMVLRLFEQEVPEIEDGTVTIQRLPVIPARAARL 234 >UniRef50_C5J6Y1 N-utilization substance protein A n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6Y1_MYCCR Length = 623 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 163/373 (43%), Gaps = 24/373 (6%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR-RWL 63 IL ++ ++ + + + E ++ KK + E ++ ++ D F + Sbjct: 20 ILESLKEIAQQNQTTIDIVLETFSKSIEKVINKKIDPEAELELETDFDKFIFKVYNINGE 79 Query: 64 VVDEVTQPT-----------KEITLEAARYED----ESLNLGDYVEDQIESVTFDRITTQ 108 +V++ I++ A + E L +G+ V+ +I+ TFD+ Q Sbjct: 80 IVEDTYFDNLDDLAKHEASFSFISISDAIAKKIAKPEDLQVGNRVKIEIDITTFDKSIFQ 139 Query: 109 TAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML 168 +A Q Q E R + D++ + +I + +L + A + Sbjct: 140 SAIQNFKQTNSEINRQRIYDKYLPLKNTVILAKITNKIHSGYIFELVEDKVAAFMPSHYS 199 Query: 169 PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAAR 228 + + GD + V+ V ++ +Q+ V+ +++ +PE+ +EI + AR Sbjct: 200 IGQKLKVGDILEVVIEDVNKSSKQSQIIVSSKSIQLVKNKIINAIPELQTNNLEIVSIAR 259 Query: 229 DPGSRAKIAVKTND----KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFV 284 PG + K+AVK + I +GA +G +G R++++S +L GE+I+IV +D+N FV Sbjct: 260 IPGEKCKVAVKKTNLPGSDHISELGAIIGEKGVRIESISQDLDGEQIEIVKYDENILTFV 319 Query: 285 INAMAPADVASI---VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSG-WELNVMT 340 NA+APA V + ++ + V AIG+ G NV+LA+ L+ +L ++ Sbjct: 320 ANAIAPARVVCVKEFKINNKNKHYTVVVPDFQHTLAIGKKGSNVQLATDLTRIKKLEIIP 379 Query: 341 VDDLQAKHQAEAH 353 + E Sbjct: 380 YSRALKDDKFEIE 392 >UniRef50_C4XE33 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XE33_MYCFE Length = 538 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 102/518 (19%), Positives = 225/518 (43%), Gaps = 48/518 (9%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVD- 66 ++ EK L E++ + K + ++ ++D++ + F V Sbjct: 23 LIGYFEKEK-LHIEEVIKIFSEETTRIINKILDPNAEIVFELDKEKQEVHIFNNKTCVTK 81 Query: 67 ------EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV------- 113 ++ + + A+ + D ++ +I+ D+ AK+ Sbjct: 82 DEELLLDLENQISFVGYKEAKVRMPKVKEDDEIKWEIDLGVLDKSKNPEAKKSLKIINSS 141 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVV-KKVNRDNISLDL-GNNAEAVILREDMLPRE 171 I Q ++ ++ MV +Q+ G+ + V+ K + + ++ + +N A + + + Sbjct: 142 IAQAIKTLQKKMVFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKR 201 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 PG V+ V E + +Q+ V+ P+++ + + +PEI E +IE+ R PG Sbjct: 202 KANPGQYFDVVIEKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPG 261 Query: 232 SRAKIAVKT---NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM 288 R K+AVK + ID G+ +G G+R+ +S +L GE+ID++L+D++ ++V N++ Sbjct: 262 ERVKVAVKLAEGANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSI 321 Query: 289 APADVASIVV-DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK 347 +P +++ DE ++ + V +L AIG+ G N LAS L+ +L+++++ D +A+ Sbjct: 322 SPIQAVDVILKDERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIISITDAKAQ 381 Query: 348 HQAEAHAAIDTFTKYL----------------DIDEDFATVLVEEGFSTL------EELA 385 + T + + ++ A + + F ++ +++A Sbjct: 382 GIIFDETLVPTISATIKKEGPKIRYQKSNNNRRFNKKPANNIFAQSFDSIDVSNFDQDIA 441 Query: 386 YVPMKELLEIEGLDEPTV--EALRERAKNALATIAQ-AQEESLGDNKPADDLLNLEGVDR 442 + E ++ L E E L ++ ++ A + +++ KP + D Sbjct: 442 AFELHEQDRLDSLQEDDSNFEELVKKIESEYAVENEVENIKNVEVTKPVAQDNKISASDY 501 Query: 443 DLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGA 480 A ++A V +DL GIDD D+ + ++ Sbjct: 502 KKAKEVAKDFVVD-DDLKNFGIDDF-DLSDIDFDEEEN 537 >UniRef50_A5IZE0 Transcription elongation protein NusA n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IZE0_MYCAP Length = 544 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 87/478 (18%), Positives = 199/478 (41%), Gaps = 45/478 (9%) Query: 13 SNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV------- 65 EK L + + + +K + E ++ +ID ++ + + +V Sbjct: 25 EKEK-LELSVLADIFSEEVTRIVQKNIDPEANIVFEIDEENKEVHVYNTEAIVVDDSEFD 83 Query: 66 -----DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV------- 113 D+V+ + L A+ N+ D ++ +I+ + + T ++ Sbjct: 84 DLSEADKVSLMLYNVPLSVAKKVKNDANVDDTIKIEIDLLALSKSTNPVVQKTPKIIESS 143 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVN-RDNISLDL-GNNAEAVILREDMLPRE 171 I+Q +++ ++++V ++ E GE + +N + + ++ + + A + + + Sbjct: 144 ILQAIKKLQKSIVYTKYLEKIGETVKVTFISMNSKGSWNVQIVDDGVIAHLPANYVSAKR 203 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 PG V+ V + + +Q+ V+ P+++ ++ +PEI +IEI R PG Sbjct: 204 VINPGSYGDVVIERVEKDTKLSQITVSLDSPKLIEKILYNNIPEISSGLIEIVNVQRIPG 263 Query: 232 SRAKIAVKTN--DKRIDPVGACVGMRGARVQAVSTELG-------GERIDIVLWDDNPAQ 282 R K K + ++ +D GA +G +R+ + +E+ E+ D++++ + + Sbjct: 264 ERTKAVFKASAGNEHLDVYGAIIGQDSSRINLIISEMNQGVNQADKEKFDVIVYTSDKKE 323 Query: 283 FVINAMAPADVASIV-VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 F+ M P V IV +E +++ + L+ AIG+ G N LAS++S L+++TV Sbjct: 324 FIRRCMLPGQVVDIVPKNESQNSFYVITIKAGLSAAIGKKGANTMLASKVSHSNLDIITV 383 Query: 342 DDLQAKH-------QAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLE 394 ++ + K+ AE ++++F +Y + T + L Sbjct: 384 EEAKQKNIPFDESKIAEVEESLNSFRRYGATKKAPTRAFNNNRRKTNSYFENLD----LS 439 Query: 395 IEGLDEPTVE--ALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAA 450 +EG D+ + + + + +E + N+E +R + KL Sbjct: 440 LEGFDKDILAFREQEQAFFDESNSQNMEFDELIQQYNSESVKENIESDERSIDEKLNE 497 >UniRef50_Q98R07 N-UTILIZATION SUBSTANCE PROTEIN A n=1 Tax=Mycoplasma pulmonis RepID=Q98R07_MYCPU Length = 550 Score = 225 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 159/367 (43%), Gaps = 23/367 (6%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 + +E +S +K L + + + A K ++ + D+ + D + + + Sbjct: 29 DFFLSLENLSRDKKLKISTVKQIFQEAFFQVIKNDFDPDADLEIVYDDEKKEVTFYNNNA 88 Query: 64 VV-----DEVTQP-------TKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAK 111 +V +E + L AR E + +GD V+ QI+ + Sbjct: 89 IVIEDALEEADDDYSAEEMLVSFVRLSDARKEKSDVQIGDIVKKQIKHDELKLNEVKKIF 148 Query: 112 QVIVQKVREAERAMVVDQFREHEGEIITGVVKKV-NRDNISLDLGNNAEAV-ILREDMLP 169 + Q + + + V+D + G+ I +++ NR +G+ V + +++ Sbjct: 149 SIFQQNLAKEAKQSVLDFYSSKIGQKIQVKIEEFKNRGFFGSVVGDMETKVFLPNKEINK 208 Query: 170 RENFRPGDRVRGVLYSVRPEARGAQ---LFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 G ++ E + L V+ + P +I + + EI I IK Sbjct: 209 NSKIALGKKIDVYFIEFAKEFQNKSETLLIVSLNSPLEVINVLKETFEEIANGSIIIKKI 268 Query: 227 ARDPGSRAKIAVKTN---DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQF 283 AR G R KIAV+ + + ++ +G +G G R + +S +L E+ID V++ ++ +F Sbjct: 269 ARKAGIRTKIAVEKSHLASEGLNIIGTLIGQSGDRNKIISEKLNNEKIDFVIYKEDLQEF 328 Query: 284 VINAMAPADVASIV-VDEDKH--TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 ++ ++ PA+V SI V + H ++ V ++ AIG+ G N L+S+LS +N+ T Sbjct: 329 IVESLKPANVISIERVVPETHIPAFNVVVPNSQMSVAIGKAGMNTILSSELSQSRINIET 388 Query: 341 VDDLQAK 347 +D + K Sbjct: 389 LDKAKEK 395 >UniRef50_C1E6R5 Predicted protein n=2 Tax=Micromonas RepID=C1E6R5_9CHLO Length = 897 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 90/388 (23%), Positives = 153/388 (39%), Gaps = 56/388 (14%) Query: 3 KEILAVVEAVSNEKA---LPREKIFEALESALATATKK-KYEQ-------EIDVRVQIDR 51 I+ + ++ K EA+ A+ A +K +Y DV V I+ Sbjct: 305 SAIVTALRDLATSKDGFESDPRVHLEAVSRAIDRAYRKLRYSAFAEMDPRGRDVCVDINV 364 Query: 52 KSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTF------DRI 105 G A+ G VE + + R Sbjct: 365 AEGTVAVL--------------------AQRIGR----GGTVEWETDDTDAFLEAYGKRH 400 Query: 106 TTQTAKQVIVQKVREAERAMVVDQFREHEGEII-TGVVKKVNRDNISLDLGNNAEAVILR 164 + + +++ E A+ D +R G+++ VV + R L L + A A + Sbjct: 401 MIRKIAHMYTEELNEQVSAVAADSYRAKRGQMVECTVVAEGRRGEYLLRLDDGAMACLPE 460 Query: 165 EDMLPRENFRPGDRVRGVLYSVRPEA----RGAQLFVTRSKPEMLIELFRIEVPEIGEEV 220 E+ +P + + G+RV ++ V R A + V+ + +L E+ EVPE+ Sbjct: 461 EESIPGKKYSQGERVCALVMEVEDRTWAADRRAPVIVSTAIAGLLAEVLAAEVPEVARGD 520 Query: 221 IEIKAAARDPGSRAKIAVKTND---KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWD 277 + IK+ AR G +K+AV + K DPV ACVG+ +R++A+ LGGE I+ W Sbjct: 521 VVIKSVARVSGKMSKVAVARQEGAEKVFDPVLACVGVENSRLRAIRERLGGEVCQILTWS 580 Query: 278 DNPAQFVINAMAPADVASIVVDEDK-------HTMDIAVEAGNLAQAIGRNGQNVRLASQ 330 DN V A+ PA V +V E+ V + A+AIG G NV+LA+ Sbjct: 581 DNREDMVAEALFPAAVHRVVKAEEDDMDGRALDKFIAYVSRFDEAKAIGAGGVNVKLAAA 640 Query: 331 LSGWELNVMTVDDLQAKHQAEAHAAIDT 358 L+G + + ++ ++ Sbjct: 641 LTGCFILIERHEEGGGAGGGWGDQRANS 668 >UniRef50_A4RY26 Predicted protein n=2 Tax=Ostreococcus RepID=A4RY26_OSTLU Length = 710 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 86/389 (22%), Positives = 154/389 (39%), Gaps = 56/389 (14%) Query: 9 VEAVSNEK-------ALPREKIFEAL-------ESALATATKKKYEQEIDVRVQIDRKSG 54 + A++ EK L E I A+ + T +K+ IDV V ID + G Sbjct: 216 LRALAKEKEGYEADVGLHLEAIARAIDRGYRDMRGSALTVLQKEVRARIDVSVDIDVQRG 275 Query: 55 DFDTFRRWL----VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTA 110 F + + V+ TK T R ++ L Y+ ++I++ R+ T Sbjct: 276 RFAVLVQVVGRGGTVEREYDDTKFFTFNV-RRQNRMRTLIRYMSEEIKT-GVARLAT--- 330 Query: 111 KQVIVQKVREAERAMVVDQFREHEGEIITGVVK-KVNRDNISLDLGNNAEAVILREDMLP 169 + F G ++ G ++ + + +D+ A VI E+ L Sbjct: 331 -----------------EDFVGQIGNVVDGTLRFRTETGSWMMDIKGGAAGVIPPEEQLL 373 Query: 170 REN---FRPGDRVRGVLYSVRPE----ARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIE 222 N + GD + + V + ++ + P ++ + R EVPE+ IE Sbjct: 374 TYNDLPLKQGDELSCFVLDVDQNLFTGREQTPVVLSMTIPALVGAIIREEVPEVARGEIE 433 Query: 223 IKAAARDPGSRAKIAVKTNDKRI---DPVGACVGMRGARVQAVSTELGGERIDIVLWDDN 279 IK+ AR G K+AV + + V C+G + ++ + GGE + + W D+ Sbjct: 434 IKSIARMAGKVTKVAVALREGSTSWSNAVETCLGEDQSILRRIRERCGGEVVHFLPWSDD 493 Query: 280 PAQFVINAMAPADVASIVVD----EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWE 335 PA+ + +++ PA+V + K V+ +L +AIG G NV+L + L+ Sbjct: 494 PAELIKSSLFPAEVLRVEESFPDGTQKRKFTAYVKEVDLRRAIGAGGNNVKLCASLTNAF 553 Query: 336 LNVMTVDDLQAKHQAEAHAAIDTFTKYLD 364 + V+ VD+ Q D Y Sbjct: 554 I-VIEVDETAGNTQRRGSFNDDLDDSYDS 581 >UniRef50_Q96T48 Transcription termination-antitermination factor (Fragment) n=34 Tax=cellular organisms RepID=Q96T48_HUMAN Length = 172 Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 1/170 (0%) Query: 143 KKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 +V + + L +N E ++ + + +P + +R G+ +R V+ V E ++ ++R+ P Sbjct: 1 YQVWKREVLLVDDDNNELILPKSEQIPADQYRKGETIRAVIERVDNENNNPKIILSRTSP 60 Query: 203 EMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAV 262 L L EVPEI + +I IK AR PG RAKIAV++ D+RIDPVGACVG+RG+RV + Sbjct: 61 TFLERLLEQEVPEIADGLIAIKKVARMPGERAKIAVESFDERIDPVGACVGVRGSRVHGI 120 Query: 263 STELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAG 312 EL E ID+V W N + + + + ++SI DE+ + Sbjct: 121 VRELCNENIDVVHWTAN-TKLLSSVLKSCPISSIAPDEETECDVYMLPKS 169 >UniRef50_A5ZWL2 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZWL2_9FIRM Length = 162 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 87/145 (60%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKE++ ++ + EK + ++ + A+E +L A K + + +V V I+ ++ DF + Sbjct: 1 MNKELMEALDILEKEKNISKDTLLGAIEQSLIQACKNHFGKADNVHVTINPETCDFSVYA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V + V P EI+L A+ + + LGD ++ +I S F RI TQ AK VI+QK+RE Sbjct: 61 EREVKEFVDDPALEISLVDAQKINTNAELGDMIKVEIHSKEFGRIATQNAKNVILQKIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKV 145 ER ++ DQ+ E E++TG+V++V Sbjct: 121 EERKVLYDQYYGMEKEVVTGIVQRV 145 >UniRef50_B9PBC3 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9PBC3_POPTR Length = 274 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 79/171 (46%), Positives = 115/171 (67%), Gaps = 2/171 (1%) Query: 305 MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLD 364 MD+ V+ NLA +IGR+GQNVRLAS+L+GW++N+MT ++ K E+ F LD Sbjct: 1 MDVVVDEENLAVSIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESEVVRKLFMAKLD 60 Query: 365 IDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEES 424 +DE+ A +L+EEGFS+LEE+AYVP+ E++EIE DE TV LR RA++AL T+ A+EE Sbjct: 61 VDEEVADILIEEGFSSLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAREEK 120 Query: 425 LGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTD 475 + + + DL +L+G+ +L KLA + T +DLAE +D+LA G Sbjct: 121 VEE--VSQDLRSLDGLTPELIGKLAEGNIHTRDDLAELAVDELAAGVGKAT 169 >UniRef50_Q6MZ96 Possible nucleic acid binding protein n=3 Tax=Mycobacterium RepID=Q6MZ96_MYCUA Length = 182 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 52/144 (36%), Positives = 84/144 (58%), Gaps = 3/144 (2%) Query: 201 KPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQ 260 P + VPE+ +++++I A AR PG RAK+AV++ I+PV C+G G R+ Sbjct: 30 SPNPIPAALSARVPELAQQLVDIVAIARIPGVRAKVAVRSRVAGINPVSVCIGWGGLRIA 89 Query: 261 AVSTELGGERIDIVLWDDNPAQFVINAM-AP--ADVASIVVDEDKHTMDIAVEAGNLAQA 317 V LGGERI +V + +PA +VIN + P A+ +E + + VEA + + Sbjct: 90 DVEKGLGGERIHVVAYHVDPATYVINVLGCPGTGTGAAAAAEERSRRIRVRVEAHDYPRT 149 Query: 318 IGRNGQNVRLASQLSGWELNVMTV 341 +G+ GQNVRLAS+L+G ++ ++ Sbjct: 150 VGKAGQNVRLASKLTGQKIEILVE 173 >UniRef50_UPI0000D54FAD transcription elongation factor NusA n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54FAD Length = 187 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 93/177 (52%), Gaps = 7/177 (3%) Query: 320 RNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFS 379 + GQNV+LAS L+ E++++T ++ + Q E + LD+++ A +LV +G++ Sbjct: 4 KKGQNVKLASNLTSLEIDILTEEEESERRQLEFKEKSVLLAETLDVEDVIAQLLVTDGYT 63 Query: 380 TLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEG 439 T+E +A ++ L +IEG D + + +R+K+ + ++ ++ + + + L NL G Sbjct: 64 TVESVAAESLENLEKIEGFDSTLAQEIIDRSKSFIQDKEESDKKLIEEKINDEKLKNLNG 123 Query: 440 VDRDLAFKLAARGVCTLEDLAEQGIDDLADIE-------GLTDEKAGALIMAARNIC 489 ++ + KLA + + D A+ +L D E L ++ A +IM AR+ Sbjct: 124 MNNSILAKLAKSNILNVNDFADLATFELIDKEEGILKELDLDEDIANNMIMEARSFW 180 >UniRef50_UPI00019018E3 transcription elongation factor NusA n=2 Tax=Mycobacterium tuberculosis RepID=UPI00019018E3 Length = 166 Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 30/178 (16%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN ++ A + A+ ++ + ++ E ++SAL TA + + D R++IDRK+G Sbjct: 1 MNIDM-AALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVI- 58 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 AR DE+ NL +D F RI TA+QV++Q+ R+ Sbjct: 59 -------------------ARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRD 97 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDN----ISLDLGNNA---EAVILREDMLPRE 171 AE +F EGEI+ GV+++ +R N + + +G E VI + +P Sbjct: 98 AENERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPPPEPVPGR 155 >UniRef50_D0PA07 Transcription elongation factor NusA n=4 Tax=Rhizobiales RepID=D0PA07_BRUSU Length = 174 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 18/153 (11%) Query: 360 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQ 419 + L++DE VL EGF+++EELAYV E+ I+G DE T +++RA+ L I Sbjct: 1 MEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIEA 60 Query: 420 AQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDL------------ 467 Q+ + AD+L L G+ + + GV T+ED A +DDL Sbjct: 61 EQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDTI 120 Query: 468 -----ADIEGLTDEKAGALIMAAR-NICWFGDE 494 L+ A +++AAR W +E Sbjct: 121 NHSGVLTPFDLSRVDAEQMVLAARLKAGWITEE 153 >UniRef50_C6SA73 N utilization substance protein A n=1 Tax=Neisseria meningitidis alpha153 RepID=C6SA73_NEIME Length = 136 Score = 84.5 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 39/90 (43%), Positives = 63/90 (70%), Gaps = 3/90 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEI-DVRVQIDRKSGDFDTF 59 M++E+L + EA+++EK + E +F+ALE AL+TA KKK ++E DVRVQI+R +G++ TF Sbjct: 6 MSREMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTF 65 Query: 60 RRWLVV--DEVTQPTKEITLEAARYEDESL 87 RRWL+V ++ T P E ++ + +L Sbjct: 66 RRWLIVADEDYTYPDVEKPSRKSKRKFPAL 95 >UniRef50_P15739 NusA protein homolog n=9 Tax=Halobacteriaceae RepID=NUSA_HALSA Length = 139 Score = 77.9 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 6/94 (6%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQ--FVINAMAPADVASIVVDEDKHTM 305 +GA +G G+RV A+ LG +VL +D P FV NA++PA V ++ V E+ T+ Sbjct: 43 MGAAIGDGGSRVDALEATLGRS---VVLVEDAPTAEGFVANALSPAAVYNVTVSENDTTV 99 Query: 306 DIA-VEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 A V + AIG +G N+ A +L+ ++ Sbjct: 100 AYAEVAHEDKGVAIGADGTNIETAKELAARHFDI 133 >UniRef50_UPI0001BCE222 transcription elongation factor NusA n=1 Tax=Campylobacter fetus subsp. venerealis str. Azul-94 RepID=UPI0001BCE222 Length = 124 Score = 75.6 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++I ++E+++NE L E + E + A A K+ Y E + +D + +++ Sbjct: 2 EKISDIIESIANEICLNFEDVKERIIRAFVNAAKRLYGYECEYEASLDPNTKAIHLYQKI 61 Query: 63 LVVDEVT---QPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQT 109 LVV++ I+L+ A D +L +GD + ++ R Sbjct: 62 LVVEDSDERLDEEHFISLKKAHELDATLEIGDSLNYELNIDELGRTGAGV 111 >UniRef50_Q2FPJ7 NusA family KH domain protein n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FPJ7_METHJ Length = 142 Score = 66.8 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 5/101 (4%) Query: 245 IDP--VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE-- 300 ++P +G +G +G ++ S G+RI+ V + D+PAQF+ N PA V + + Sbjct: 40 VNPGDMGYAIGKKGVNIKKASESF-GKRIEAVEYSDDPAQFIRNCFHPAQVKEVQFSDYH 98 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 + + + + +AIG+ G+N+ L+ E ++ + Sbjct: 99 GEQIAHVVIRDEDRGRAIGKAGKNLNRTKMLALREHDIQNI 139 >UniRef50_D1YXX1 NusA protein homolog n=9 Tax=Euryarchaeota RepID=D1YXX1_METPS Length = 147 Score = 65.2 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE--DKHTM 305 +G +G G + V ++ G ++++ ++++P +F+ N PA V +IV+ ++ Sbjct: 47 MGLAIGKNGNNINRVKKQI-GRHVEVIEYNEDPKEFIKNLFQPATVKNIVISTKGERTLA 105 Query: 306 DIAVEAGNLAQAIGRNGQNVRLASQLSGWE 335 + V + AIG+NG+N+ L+ Sbjct: 106 IVDVATKDKGLAIGKNGRNINKVKLLAQRH 135 >UniRef50_A8MB79 NusA family KH domain protein n=6 Tax=Thermoproteaceae RepID=A8MB79_CALMQ Length = 148 Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Query: 252 VGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE---DKHTMDIA 308 VG G V+ + L G+ ++IV + D+P + + NA+ PA V +I +++ + I Sbjct: 54 VGKGGINVKKL-KNLLGKDVEIVEYGDDPEELLRNALYPAKVVNITINKLPNNGKVAIIR 112 Query: 309 VEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 VE G A+G+ +N++ A+ L+ ++ V Sbjct: 113 VEEGEKGIALGKYHRNLKRAALLAKRYFDIDNV 145 >UniRef50_A2SQE3 NusA family KH domain protein n=4 Tax=Methanomicrobiales RepID=A2SQE3_METLZ Length = 157 Score = 63.7 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 7/104 (6%) Query: 245 IDP--VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK 302 I+P +G +G +GA ++ S G+++++V ++ + QF+ N P V ++ +ED+ Sbjct: 41 INPGEMGLAIGKKGASIKKASDAF-GKKVEVVEYNPDKVQFIRNCFLPVHVQTVTFEEDE 99 Query: 303 HT----MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 I V + AIG+ G+N+ A +L+ + ++ V+ Sbjct: 100 EENTEVAYIEVADTDRGLAIGKEGRNIIKAKKLAFRQFDIANVE 143 >UniRef50_O27128 Transcription termination factor NusA n=6 Tax=Euryarchaeota RepID=O27128_METTH Length = 143 Score = 63.3 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED---KHT 304 +G +G +G+ V V L ++++ ++P +F+ N MAPA V SI + + + Sbjct: 45 MGLAIGKKGSTVAKVQKALDK-GVEVIEHSNDPVEFIKNLMAPAKVRSIRILQKENGEKI 103 Query: 305 MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 + + N AIGR GQN+ A L+ + N+ + Sbjct: 104 ATVETDPKNKRIAIGRGGQNIERARLLARRQHNISNI 140 >UniRef50_P11523 NusA protein homolog n=15 Tax=Thermoprotei RepID=NUSA_SULAC Length = 143 Score = 62.9 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 5/101 (4%) Query: 245 IDP--VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADV--ASIVVDE 300 I+P +G +G G V+ + +L + ++IV + +N V N M+PA V +V Sbjct: 41 INPESMGVAIGKNGLNVRKL-EKLINKSVEIVGYQENLEDLVKNLMSPARVKTIKVVQSN 99 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 K T+ I VE + AIG+NG+NV A + L++ +V Sbjct: 100 SKKTVYITVEPQDKGIAIGKNGRNVERAKLILKRYLDIDSV 140 >UniRef50_A1RWW2 NusA family KH domain protein n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RWW2_THEPD Length = 149 Score = 62.5 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 252 VGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIA--V 309 VG G++++ + EL + +++V + FV + PA V + V E+ + + V Sbjct: 53 VGKNGSKIRMI-KELLRKDVEVVEDGSSLEDFVKSVFFPARVVEVKVREENNRKVVIAVV 111 Query: 310 EAGNLAQAIGRNGQNVRLASQLSGW 334 L AIGRNG+NV+ A L Sbjct: 112 PPDQLGLAIGRNGRNVQRAKILLKR 136 >UniRef50_B1L737 NusA family KH domain protein n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L737_KORCO Length = 158 Score = 62.1 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 5/98 (5%) Query: 249 GACVGMRGARVQAVSTELGGE---RIDIVLWDDNPAQFVINAMAPADVASIVV--DEDKH 303 G VG G +++A+ L G+ I++V +DD+P F+ N ++PA V + + +D Sbjct: 50 GRAVGRGGRKLKAMKRFLKGDLDYDIEVVEFDDSPEGFIANLLSPARVQKVKIVHQDDGI 109 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 T V + + AIGRNG+ ++ L+ ++ V Sbjct: 110 TAIAYVLDEDKSLAIGRNGRRIKRTRLLAKRWYDIDNV 147 >UniRef50_B5YEY5 Ribosomal protein S1, putative n=2 Tax=Dictyoglomus RepID=B5YEY5_DICT6 Length = 552 Score = 58.7 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 23/176 (13%) Query: 35 TKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVE 94 K+KY + ++ +I + SG L+ P EI+ + SL +GD V+ Sbjct: 272 FKEKYPEGSIIKAEIIKISGGIVVKVDNLI---GYVPMSEISWGRPQDVKNSLKVGDKVK 328 Query: 95 DQIESVTFDRITTQTAKQVIVQKVREAE---RAMVVDQFREHEGEIITGVVKKVNRDNIS 151 ++ SV Q I +++ E ++ + GEI++G V + I Sbjct: 329 AKVLSVD-------DLNQKIFLSIKQVEPNPWEVIDQNY--KIGEIVSGKVTNITDFGIF 379 Query: 152 LDLGNNAEAVILRE----DMLPR--ENFRPGDRVRGVLYSVRPEARGAQLFVTRSK 201 +++ E +I R+ + + + F+PGD + + + E + +L ++R Sbjct: 380 IEIKPGLEGLIPRKLISWERISNISDIFKPGDFIEAKIIEIDKENK--KLTLSRRD 433 Score = 41.7 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 10/97 (10%) Query: 136 EIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPE 189 +I+ G + KV+ D +++DLG ++ ++++ R + GD V+ + S+ Sbjct: 194 QIVRGRIIKVDEDKLTVDLGLGIIGIVEKDEISWFPIKNIRRYYNTGDIVKARVLSLDEN 253 Query: 190 ARGAQLFVTRSKPEMLIELFRIEVPE---IGEEVIEI 223 +R AQL + +++P LF+ + PE I E+I+I Sbjct: 254 SRTAQLSIKQAQPNP-WSLFKEKYPEGSIIKAEIIKI 289 >UniRef50_C7NTX6 NusA family KH domain protein n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NTX6_HALUD Length = 142 Score = 57.9 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED--KHTM 305 VG +G G V + LG + + +V P FV NA+APA V + ++E + Sbjct: 45 VGKAIGRDGETVARIEDRLGRD-VTLVEDAPTPEGFVANALAPAAVYDVTIEERDGERVA 103 Query: 306 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 V+ + AIG G+ + LA +L+G + Sbjct: 104 FADVDEADTGAAIGTEGRTIELARRLAGRHFEI 136 >UniRef50_D2RUW3 NusA family KH domain protein n=2 Tax=Halobacteriaceae RepID=D2RUW3_9EURY Length = 146 Score = 57.9 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 252 VGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHT-MDIAVE 310 +G G V+ + G+ + +V D+P FV NA++PA V ++ + E+ T + V Sbjct: 54 IGPEGRTVRQYEERV-GKPVRLVEDADDPEAFVANALSPAAVYNVTISENDDTVAYVEVA 112 Query: 311 AGNLAQAIGRNGQNVRLASQLSGWELNV 338 + AIG NG+ + A L+ + Sbjct: 113 DEDRGVAIGSNGRTIEAARTLAQRHFGI 140 >UniRef50_A2ST95 NusA family KH domain protein n=5 Tax=Methanomicrobiales RepID=A2ST95_METLZ Length = 151 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDI 307 +G +G G ++ +S L G+RI++V +D++ F+ N PA+VAS+ + I Sbjct: 48 MGIAIGKGGDNIKKMSRVL-GKRIEMVEFDEDREVFIANMFKPAEVASVSYGGRDEPVMI 106 Query: 308 AVEAG-NLAQAIGRNGQNVRLASQLSGW 334 V + AIG+ G + A L Sbjct: 107 TVPERGDFGLAIGKGGSTIEKARILVRR 134 >UniRef50_A1HTW2 Hydroxymethylbutenyl pyrophosphate reductase n=4 Tax=Veillonellaceae RepID=A1HTW2_9FIRM Length = 655 Score = 56.0 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 12/106 (11%) Query: 105 ITTQTAKQVI---VQKVREAERAMVVDQFREH--EGEIITGVVKKVNRDNISLDLGNNAE 159 I AKQ I +KV E E+ ++ EG+I+TG V ++ + +DLG + Sbjct: 428 IEIDQAKQKIVLSRRKVLEQEQQRRAEELFSRLAEGQIVTGTVSRIADFGVFVDLG-GVD 486 Query: 160 AVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTR 199 +I D+ P E GD V+ + V P+A+ L + R Sbjct: 487 GLIHISDLSWHRVKNPTEVVNIGDEVQVFVQKVDPKAKRISLSLKR 532 >UniRef50_P29157 NusA protein homolog n=12 Tax=Euryarchaeota RepID=NUSA_THECE Length = 145 Score = 55.2 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVIN---AMAPADVASIVVDED--- 301 +G +G +GA V+ V +G E I+++ +NP +F+ N ++ V + + E Sbjct: 45 MGLALGKKGANVKRVQNMIGKE-IEVIEHSENPEEFLRNIYKSLG-VKVKRVHITEKRDG 102 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWE 335 K + + +AIGR GQN+ L +L Sbjct: 103 KRVALLDIGPREKPRAIGRGGQNINLVKELMERH 136 Score = 44.8 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 277 DDNPAQFVI--NAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW 334 + + +F+ +M A V ++D+ ++ + ++ G + A+G+ G NV+ + G Sbjct: 6 NTDQIKFIALFESMTGATVLDCLIDDRRNRLIFVIKKGEMGLALGKKGANVKRVQNMIGK 65 Query: 335 ELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDED 368 E+ V+ + + + ++ K + I E Sbjct: 66 EIEVIEHSENPEEFLRNIYKSLGVKVKRVHITEK 99 >UniRef50_A9A465 NusA family KH domain protein n=6 Tax=Thaumarchaeota RepID=A9A465_NITMS Length = 154 Score = 55.2 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 248 VGACVGMRGARV---QAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD---ED 301 +G +G G + Q + +++V +D++PA+F+ N + V+ + ++ + Sbjct: 47 MGLAIGKGGMHIKSLQNIVKR----NVELVEFDEDPAKFLSNLLNSKLVSEVKINTRADG 102 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQ 349 + V+ +GR G+N A L+ ++ +V + Q Sbjct: 103 TKQAIVMVDPRKKGIVVGREGRNAEKARMLAKRYFDITSVLINSPERQ 150 >UniRef50_B5IGJ7 NusA family KH domain protein n=1 Tax=Aciduliprofundum boonei T469 RepID=B5IGJ7_9EURY Length = 141 Score = 54.4 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 255 RGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD--EDKHTMDIAVEAG 312 G+++Q V L + + +V + + F N V +I V+ +++ ++ + V+ Sbjct: 51 NGSKIQTVRN-LIKKNVMVVEYSPDIVVFTKNIFHRFHVKNIKVENVDNQFSITVFVDPR 109 Query: 313 NLAQAIGRNGQNVRLASQLSGWELNVMTV 341 + A+AIG+ G+N++LA ++ + ++ Sbjct: 110 DKARAIGKEGRNLKLAKEIISRHFPLKSI 138 >UniRef50_D1JEK5 Putative NusA protein homolog n=1 Tax=uncultured archaeon RepID=D1JEK5_9ARCH Length = 139 Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 4/94 (4%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHT--- 304 +G +G G+ + V + + I++V + +F+ N PA++ S+ + D + Sbjct: 41 MGLAIGKGGSNITKVKNMVRKD-IEVVEHSTDAKEFIENLFRPAEIKSVELLTDDNGKSC 99 Query: 305 MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 +AV AIG+NG+ ++ L L + Sbjct: 100 AYVAVLTKQKGIAIGKNGERIKKVKLLVKRNLGI 133 >UniRef50_Q2S1M7 Ribosomal protein S1, putative n=2 Tax=Rhodothermaceae RepID=Q2S1M7_SALRD Length = 871 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 16/117 (13%) Query: 126 VVDQFRE---------HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPG 176 V DQFR+ E +I+ G V +VN D + +D+G ++ ++ R++ E PG Sbjct: 178 VYDQFRDVVDETSIDVREQDIVEGRVLRVNEDYVVIDIGYKSDGIVSRDE-FGEEEIHPG 236 Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKA--AARDPG 231 D V L R E R QL +++ + + + V EI E I+ R G Sbjct: 237 DTVEVYLE--RKEDRDGQLVLSKEQADKVRRW--QRVEEIYENEEVIEGTIIRRIKG 289 >UniRef50_C7NV64 Ribosomal protein L32e n=2 Tax=Halobacteriaceae RepID=C7NV64_HALUD Length = 335 Score = 52.9 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 51/150 (34%), Gaps = 26/150 (17%) Query: 358 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA---- 413 T I E+ A L E GF T+++L L E+ G+ ++ + Sbjct: 8 ELTDVSGIGEETAGALRESGFETIDDLREADEDALTEVTGIGNALAARIKADVGDVEVDE 67 Query: 414 ----------------------LATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAAR 451 A E D DDL ++ GV A L Sbjct: 68 DAEAEIEESEESTADSDADASDDAADEADAEPEEDDAAAYDDLTDISGVGEGTAENLREA 127 Query: 452 GVCTLEDLAEQGIDDLADIEGLTDEKAGAL 481 G T+ED+A DL ++EG+ + A + Sbjct: 128 GFETVEDVARAEQSDLTEVEGIGNALAARI 157 Score = 42.1 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%) Query: 356 IDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRE 408 D T + E A L E GF T+E++A +L E+EG+ ++ Sbjct: 107 YDDLTDISGVGEGTAENLREAGFETVEDVARAEQSDLTEVEGIGNALAARIQA 159 >UniRef50_Q9YAU4 NusA protein homolog n=1 Tax=Aeropyrum pernix RepID=Q9YAU4_AERPE Length = 144 Score = 52.1 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 249 GACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK--HTMD 306 G +G RG R+ + E G+ I++V + + + V N + SI V E + Sbjct: 48 GRAIG-RGGRLIKLLREALGKNIEVVEYSSDLERIVKNLFPGVKIESINVRERNGVKQVV 106 Query: 307 IAVEAGNLAQAIGRNGQNVRLA 328 I V + AIG+ G+NV+ A Sbjct: 107 IKVSEDDKGAAIGKGGKNVKRA 128 >UniRef50_P14026 NusA protein homolog n=8 Tax=Methanococcales RepID=NUSA_METVS Length = 173 Score = 52.1 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 3/112 (2%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDI 307 +GA +G G V+ + + G++ID++ + ++ QF+ N AP ++ + V + + + + Sbjct: 43 IGAAIGKGGENVKNATDKF-GKKIDLIEYSEDLKQFIKNIFAPIELEDVWVKKFGNDLVV 101 Query: 308 AVEAG-NLAQA-IGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357 V L +A IG G+N+ A ++G V + + + + Sbjct: 102 YVRVHPRLRRAIIGDKGKNIDRAVDIAGRLAGVKNIKVVAGLRKDADNRPKK 153 >UniRef50_B1LBI3 RNA binding S1 domain protein n=5 Tax=Thermotogaceae RepID=B1LBI3_THESQ Length = 543 Score = 51.7 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 15/150 (10%) Query: 81 RYEDESLNLGDYVEDQ-IESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIIT 139 + +E ++ GD V+ + I +R T + K K + + D++ ++T Sbjct: 311 KSLEEVVSAGDLVKVEVINVDKENRKLTLSYK-----KAKGDPWENIEDRYN--VNNVVT 363 Query: 140 GVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGA 193 G V + + ++L E + ++ P E + G++V+ + + E R Sbjct: 364 GKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILKIDKENRKI 423 Query: 194 QLFVTRSKPEMLIELF-RIEVPEIGEEVIE 222 L + R++ +E I I+ Sbjct: 424 TLSIKRTQENPWERALKELETDSIVSGTIK 453 Score = 45.6 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 66/164 (40%), Gaps = 10/164 (6%) Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 +VVD + + + + +G+ + QI ++ ++ + + ++ +++K E Sbjct: 37 VVVDFGGKSEGFVPVNELIKSLDEYKVGENLTLQILNLNYEERSILSERRPVLRKTLEEL 96 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR-VRG 181 R + E + + V + ++ L A + L R N ++ + Sbjct: 97 RK----DYEEKKP--VKARVVSQTKGGYNVLLKGVVSAFLPGSHSLLRRNDPIPEKEIEV 150 Query: 182 VLYSVRPEARGAQLFVTRSK--PEMLIELF-RIEVPEIGEEVIE 222 ++ + RG ++ V+R + + E F +V +I E ++ Sbjct: 151 IILEMVQTKRGPRIVVSRRALQDKKIEEFFSEKKVGDIVEGTVK 194 Score = 44.4 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 7/97 (7%) Query: 119 REAERAMVVDQFREH-EGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRE 171 R + + + F E G+I+ G VK ++ + +++ I R ++ P + Sbjct: 169 RALQDKKIEEFFSEKKVGDIVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTRISPED 228 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIEL 208 +PG + + + E + L + R P+ ++ Sbjct: 229 IVKPGQNITAKIIELDKEKKNVILSLKRLMPDPWEKV 265 Score = 41.3 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 40/93 (43%), Gaps = 7/93 (7%) Query: 123 RAMVVDQFRE---HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR-ENFRPGDR 178 ++ Q+ G+I+ GVV D + +D G +E + +++ + ++ G+ Sbjct: 7 NDEILSQYEPEEFRRGQIVKGVVIGKEDDGVVVDFGGKSEGFVPVNELIKSLDEYKVGEN 66 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRI 211 + + ++ E R ++ +P + L + Sbjct: 67 LTLQILNLNYEERS---ILSERRPVLRKTLEEL 96 >UniRef50_B0VFT2 Putative Ribosomal protein S1 n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFT2_9BACT Length = 503 Score = 51.4 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 51/116 (43%), Gaps = 14/116 (12%) Query: 112 QVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML--- 168 ++++RE ER + G+I+ G V ++ +DLG E ++ ++ Sbjct: 185 HRQLEEMREQERKETALA-KLKVGDIVKGKVLRMTTFGAFIDLG-GIEGLMHVSEISWQH 242 Query: 169 ---PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVI 221 P++ + G + + + +G ++ ++R +L + F + + E+ E I Sbjct: 243 IVRPQDELKKGQEIEVKILDI----KGEKIALSRK--VLLEDPFEVAMKELHEGDI 292 Score = 42.5 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 68/162 (41%), Gaps = 24/162 (14%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 EI+ + + L G +E +I + ++I ++V+++ E + + Sbjct: 236 SEISWQHIVRPQDELKKGQEIEVKILDIKGEKIALS--RKVLLEDPFEVAMKELHE---- 289 Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYS 185 G+II V +++ +L E +I +M PR+ + GD V+ + Sbjct: 290 --GDIINCRVLRLHNFGAFAELKPGVEGLIPISEMSRNRNISHPRDIVKEGDWVQVQILR 347 Query: 186 VRPEARGAQLFVTR----SKP-EMLIELFRIEVPEIGEEVIE 222 + + ++ ++ + P + + E+ ++E P E ++E Sbjct: 348 IDEDTH--KISLSLKALEADPWDKIDEIIQLETP--FEGIVE 385 >UniRef50_D1CBU2 RNA binding S1 domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU2_THET1 Length = 431 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 74/164 (45%), Gaps = 15/164 (9%) Query: 71 PTKEITL----EAARYEDESLN-LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 125 P+ +I+ A + E N +G ++ ++ V R ++++ Q+ +E + Sbjct: 193 PSSQISFLVSSNDADRQSELANLVGRTLQAKVIEVNRKRNRLILSERIATQERKETSKER 252 Query: 126 VVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRV 179 ++++ EG+I+ G V + +D+G A+ +I ++ P E +PGD V Sbjct: 253 LIEEL--REGQIVKGRVTSLADFGAFVDIG-GADGLIHLSEISWGRINHPSEVLKPGDEV 309 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRI-EVPEIGEEVIE 222 ++ ++ E + L + R++PE +V +I E + Sbjct: 310 DVMVLNIDREHKKIALSMKRTQPEPWATAMERYDVGQIVEGEVT 353 Score = 41.7 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 10/93 (10%) Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDM-----LPRENFRPGDRVRGVLYSVRPE 189 EI+ GVV + ++ +D+G +E ++ ++ +E+ PG + + + + Sbjct: 79 NEIVDGVVMGFDNGDLIVDVGGKSEGIVPASELTTLSEEEKESLEPGQPIVVSVLNASED 138 Query: 190 ARGAQLFVT--RSKPEMLIELF--RIEVPEIGE 218 G ++ ++ R++ E L ++E EI + Sbjct: 139 NEG-RIVLSVDRARAERLWRELQQKLETGEIVD 170 >UniRef50_C5A6V0 RecJ-like phosphoesterase, containing RNA binding S1 and OB-fold nucleic acid binding domain n=5 Tax=Thermococcus RepID=C5A6V0_THEGJ Length = 804 Score = 50.2 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGA 193 G + G + +V R + + L + +I R+D+L ++PG+ + + VRP+ R Sbjct: 195 IGNVYKGTIDRVERFGVFVKLNPHVVGLIKRKDLLGGREYKPGEEILVQVLDVRPDKREI 254 Query: 194 QLFVT 198 L + Sbjct: 255 DLIES 259 >UniRef50_Q2RIU7 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RIU7_MOOTA Length = 736 Score = 50.2 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 9/102 (8%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSV 186 G ++ G V ++ + + +D+G +E VI ++ P E GD + ++ Sbjct: 363 RRGNVVAGTVVQITDNEVMVDVGGKSEGVIPLNELSHRNVTDPHEVVAVGDTINVMVLRP 422 Query: 187 RPEARGAQLFVTRSKPEMLIELFRIEV---PEIGEEVIEIKA 225 E L R+ + E + EI EVIE+ Sbjct: 423 ENEEGHPVLSKRRADRRVAWEKLEEHLASGEEIQGEVIEVVK 464 >UniRef50_Q2LU20 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU20_SYNAS Length = 250 Score = 50.2 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 32/203 (15%) Query: 90 GDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITG-VVKKVNRD 148 GD I + R + ++ + + + D R+ G ++ G +VK VN Sbjct: 61 GDLQVRSIPLSSIGRHAIKRIRRDLSLSLAKIRVLRDYDLSRDLVGRVVEGMIVKAVNHG 120 Query: 149 NISLDLG-------NNAEAVILREDMLPREN--FRPGDRVRGVLYSV----RPEARGAQL 195 ++S+ L N P+E +RPGD + + V ++ Sbjct: 121 SLSIRLQANGSCNPGNLVGSCPYRFQTPKERGTYRPGDVLSFQVLKVSPVMENGMPRLEI 180 Query: 196 FVTRSKPEMLIELFRIEV---PEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACV 252 + R+ ++ L V P + ++ + R G+ +++ V T D Sbjct: 181 TLGRNGRGLVEGLIMKRVWENPSCRD--VKARCVKRIAGAYSEV-VSTAPVSRDA----- 232 Query: 253 GMRGARVQAVSTELGGERIDIVL 275 +++VS EL E I +V Sbjct: 233 ------IKSVSDELK-EYIRVVR 248 >UniRef50_C7NE91 RNA binding S1 domain protein n=3 Tax=Leptotrichia RepID=C7NE91_LEPBD Length = 600 Score = 50.2 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 16/150 (10%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVT-FDRITTQTAKQV 113 D+ F EV E + + + E + +GD VE ++ V D+ + + KQ+ Sbjct: 439 DYGIFVELEKGIEVFIHRNEFSWD--KREHKKYKVGDEVEFKVIIVDKLDKKLSGSIKQL 496 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLP---- 169 +EA +G +I + ++ + + + L + ++ + ++ Sbjct: 497 EKSPWKEATEQC-------KKGNVINTEIVEIQENFVLVKLTDRFNGIVPKRELSEEFLK 549 Query: 170 --RENFRPGDRVRGVLYSVRPEARGAQLFV 197 E F GD+V+ V+ + + + L V Sbjct: 550 DISEKFSIGDKVQAVITDINEKRKSIALSV 579 >UniRef50_Q5JET4 Pko radA intein n=2 Tax=Euryarchaeota RepID=RADA_PYRKO Length = 836 Score = 50.2 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%) Query: 345 QAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVE 404 + Q++ I + A L E G+ T+E +A EL EI G+ E Sbjct: 28 SSDKQSKPEKKISALEDLPGVGPATAEKLREAGYDTIEAIAVASPLELKEIAGISEGAAL 87 Query: 405 ALRERAKNA 413 + + A+ A Sbjct: 88 KIIQAAREA 96 Score = 44.8 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%) Query: 434 LLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNIC 489 L +L GV A KL G T+E +A +L +I G+++ A +I AAR Sbjct: 42 LEDLPGVGPATAEKLREAGYDTIEAIAVASPLELKEIAGISEGAALKIIQAAREAA 97 >UniRef50_B5Y9T3 Ribosomal protein S1 n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y9T3_COPPD Length = 559 Score = 49.8 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 7/96 (7%) Query: 115 VQKVREAERAMVVDQFREHEG-EIITGVVKKVNRDNISLDLGNNAEAVILREDM----LP 169 Q + E ++ + + +I+ G V ++ + I +DLG+ E + ++++ + Sbjct: 173 RQVLEEEQKERAEKAWLRLKDSDIVRGHVSRITDEGIFVDLGDGIEGFVPKDELDWRPIK 232 Query: 170 R--ENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPE 203 + FR GD VR + SV E + L + + P Sbjct: 233 NIAKVFRRGDVVRAKVLSVDEEKKEMVLSIRLATPN 268 >UniRef50_Q9YFQ8 Putative ski2-type helicase n=1 Tax=Aeropyrum pernix RepID=HELS_AERPE Length = 735 Score = 49.8 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 4/83 (4%) Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418 + + A +L E G+ ++E+LA ++L+ + + T + E L + Sbjct: 649 LVEIPGVGRVRARILFEAGYRSIEDLATARAEDLMRLPLIGPSTARQILE----FLGRVD 704 Query: 419 QAQEESLGDNKPADDLLNLEGVD 441 +A+E + LL+ D Sbjct: 705 EAREAEAREMLARKGLLSYLEGD 727 >UniRef50_D1XBA7 RNA binding S1 domain protein n=2 Tax=Streptomyces RepID=D1XBA7_9ACTO Length = 158 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 16/132 (12%) Query: 77 LEAARYEDES--LNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHE 134 L R++D S + +G V + T A+ + KV E + R Sbjct: 23 LSWHRFDDPSDVVQVGQRVSCEFMGSD-----THNAEARLSLKVLELDPLQAFAD-RTVV 76 Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRP 188 G+ G V+ V + +DLG+ ++ ++ P E+F G+++ V+ + Sbjct: 77 GQGFRGTVETVAPIGVFVDLGDGIVGLVPSREIDGRPAAGPTEDFEVGEQIAVVVAEIEL 136 Query: 189 EARGAQLFVTRS 200 R ++F++RS Sbjct: 137 PTR--RVFLSRS 146 >UniRef50_P46836 30S ribosomal protein S1 n=166 Tax=Actinobacteria (class) RepID=RS1_MYCLE Length = 481 Score = 49.4 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRP 188 G+I+ G + KV+RD + LD+G E VI ++ P E GD V ++ + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLT--K 93 Query: 189 EARGAQLFVTRSKPEM 204 E + +L +++ + + Sbjct: 94 EDKEGRLILSKKRAQY 109 >UniRef50_D1N749 Ribosomal protein S1 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N749_9BACT Length = 607 Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGA 193 +G+I+ G + D +D+G AE + + L + GD++ L + Sbjct: 64 KGKIVEGKIVAKRPDGALVDIGYKAEGFVPASEFLKFDEANIGDKIDVYLEEIENRNNMP 123 Query: 194 QLFV 197 ++ + Sbjct: 124 EISL 127 >UniRef50_C0GDV0 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDV0_9FIRM Length = 678 Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 10/99 (10%) Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRED------MLPRENF 173 E + +F G+++TG V +V+ D + +D+G +E V+ R++ + + Sbjct: 293 EVSLDQEIKEFSA--GDVVTGTVVQVSDDEVLVDIGYKSEGVLPRQEVILEGDQMLADVM 350 Query: 174 RPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIE 212 G V + V + ++ ++R E + +E Sbjct: 351 ENGQEVEVAVKKVDDQEG--RIILSRKAIERKQKWAELE 387 Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 83/220 (37%), Gaps = 34/220 (15%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDF-DTFRRWL 63 I V+ + NEK ++ A E K++ D +G + Sbjct: 269 IKEVIGKMENEKNTELQEEQTATEEVSLDQEIKEFSAG-------DVVTGTVVQVSDDEV 321 Query: 64 VVD-----EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVT--FDRITTQTAKQVIVQ 116 +VD E P +E+ LE + + + G VE ++ V RI ++ I + Sbjct: 322 LVDIGYKSEGVLPRQEVILEGDQMLADVMENGQEVEVAVKKVDDQEGRIILS--RKAIER 379 Query: 117 KVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRE----DMLPREN 172 K + AE ++ G I++G VK+ + ++LG +A + +P N Sbjct: 380 KQKWAELEKAFEE-----GTILSGKVKEAVPAGLVVELGGGYDAFMPGSLVDVRYIPDFN 434 Query: 173 FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIE 212 G + + +RPE +L ++R ++ E Sbjct: 435 EFQGQEISFKIIEMRPEKE--KLILSR------KQVLEEE 466 >UniRef50_A4J3N5 Hydroxymethylbutenyl pyrophosphate reductase n=3 Tax=Clostridia RepID=A4J3N5_DESRM Length = 672 Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 14/107 (13%) Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRPGDRVRGVLY 184 GE++ G+V +V D + +D+ +E VI R++M +E + GD + V+ Sbjct: 294 SPQAGELVKGIVVQVGMDEVLVDIRAKSEGVIPRKEMAFYGVDNLQEIVKVGDEIECVVI 353 Query: 185 SVRPEARGAQLFVT--RSKPEMLIELFRIEVPEIGEEVIEIKAAARD 229 ++ ++ R+ E + + + I IK R+ Sbjct: 354 KAEDNEG--KIILSKERADAEKAWDGLEEA---MEQGTI-IKGVVRE 394 >UniRef50_UPI00017435B0 LytB protein n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00017435B0 Length = 413 Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 66/166 (39%), Gaps = 22/166 (13%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 D+ F EV E + + + E + +GD VE ++ I ++ + Sbjct: 252 DYGIFVELEKGIEVFIHKNEFSWD--KREHKEYKVGDEVEFKV-------IVIDKIEKKL 302 Query: 115 VQKVREAER---AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLP-- 169 +++ E+ V +++ +G I+ + ++ + + L + ++ + ++ Sbjct: 303 SGSIKQLEKSPWKEVTEKY--KKGNIVNTEIVEIQENFALVKLTDRFNGIVPKRELTEDF 360 Query: 170 ----RENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRI 211 E F GD+V V+ + + + + ++ K + + E + Sbjct: 361 LKDISEKFSVGDKVEAVITDINEKRK--SIALSLKKVQEMEEKKEL 404 >UniRef50_B1I3Y7 Hydroxymethylbutenyl pyrophosphate reductase n=3 Tax=Clostridiales RepID=B1I3Y7_DESAP Length = 677 Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 40/81 (49%), Gaps = 8/81 (9%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRPGDRVRGVLYSV 186 G+I+ GV+ +V +D + +D+G +E V+ ++ P E + GD + + V Sbjct: 319 RSGDIVRGVIVQVGQDEVLVDVGAKSEGVVPLRELSCYDVSSPDEVVQVGDEIDVWV--V 376 Query: 187 RPEARGAQLFVTRSKPEMLIE 207 + E ++ +++ + + + Sbjct: 377 KAEDNEGRIILSKGRADAVKA 397 Score = 41.7 bits (97), Expect = 0.058, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 51/115 (44%), Gaps = 9/115 (7%) Query: 89 LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD 148 +G + +I + R +++V++++ +R ++ EG+++ GVV+++ + Sbjct: 450 VGREISARIIELNKARKKVILSRKVLLEEEYSRKRKETLE--TTQEGDVVKGVVRRLTQF 507 Query: 149 NISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFV 197 +D+G + ++ ++ P E + GD + + + E L + Sbjct: 508 GAFVDIG-GLDGLLHISEISWHRINHPSEVLKVGDELEVQVLRIDRENEKVSLSL 561 >UniRef50_B3TCT6 Putative S1 RNA binding domain protein n=2 Tax=root RepID=B3TCT6_9BACT Length = 571 Score = 48.7 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%) Query: 109 TAKQVIVQKVREAERAMVVDQFREH---EGEIITGVVKKVNRDNISLDLGNNAEAVILRE 165 T KQ + +E E+ ++ + EGEI TGVV KV ++ I +DLG +E I E Sbjct: 4 TIKQYKSKSHKEFEK-LLSQDWGNRKFKEGEITTGVVSKVGKNFIFVDLGLKSEGAIPVE 62 Query: 166 DMLPR---ENFRPGDRVRGVLYSVRPEARGAQLFVTR 199 + + G ++ +L + + + ++R Sbjct: 63 EFKLTKEIDKIEIGSKIEVLLEKIENKTGN--VVISR 97 Score = 42.1 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 63/152 (41%), Gaps = 20/152 (13%) Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 VV +T I+++ + D ++ D + ES Q K I++ +E E+ Sbjct: 381 VVKNITDYGLFISVKDS-ELDGMIHYKDLNWSEKESELEKYKKNQLIKFKILEINQEKEK 439 Query: 124 ------AMVVDQFR----EHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRE-- 171 + D F+ + +++T +V + D I + GN ++++ L +E Sbjct: 440 IRLGIKQLTQDPFKFFMNKKISDVVTAIVVSSSNDGIHVYAGNKDLLLLIKRSQLAKEPE 499 Query: 172 -----NFRPGDRVRGVLYSVRPEARGAQLFVT 198 + GDRV ++ + E R ++ ++ Sbjct: 500 NQRPSRWARGDRVDCMIIELDKENR--KVVLS 529 >UniRef50_B4D0J0 Amino acid adenylation domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0J0_9BACT Length = 619 Score = 48.3 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 4/97 (4%) Query: 20 REKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEA 79 RE + AL A AT + D ID S + ++ VV+ V EI E Sbjct: 147 REAMLAALRKAARGATGELVGAARDSGAGIDPTSDEVKLSAKFRVVETVENEENEIGFEL 206 Query: 80 ARYEDESLNLGDYVEDQIESVTFDR----ITTQTAKQ 112 A + +G+ +E + F R I + K+ Sbjct: 207 ATTLKADIQVGEDLELLLSPQEFGRVLGLIAAEAMKR 243 >UniRef50_D1CF08 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CF08_THET1 Length = 785 Score = 48.3 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 59/138 (42%), Gaps = 9/138 (6%) Query: 356 IDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRE-RAKNAL 414 +D + L + +L G T ++L + +ELL+++G+ + +E ++ + +A Sbjct: 158 VDNSLENLQLSPRIRGILRRAGIFTADQLYRLTDEELLKLKGIGKAALEEIKAVKLGDAD 217 Query: 415 ATIAQAQEESLGDN-------KPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDL 467 + +E+ D+ ++ ++ + + +L G+ T+ D+ + L Sbjct: 218 NKRSIEEEKQRLDDAGIKIPGGISEHPISKLPLSMSIIHRLELAGIKTIGDITGENFSRL 277 Query: 468 ADIEGLTDEKAGALIMAA 485 +I + A I+ A Sbjct: 278 QEIPRIGKVTAKR-ILEA 294 Score = 41.3 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 14/125 (11%) Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN-------- 412 + I A L G+S LE L+ V ++E L ++ ++ +R+ ++ Sbjct: 6 QLAKISPSLARALRTSGYSNLESLSQVTVEEFLSTVRVNYSELQKIRDTLRSQGLDFKED 65 Query: 413 -----ALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDL 467 + + Q S G + L ++ G+ LA+ G+ T++DLA + Sbjct: 66 KVRYPFINPMLLQQVASEGIDLSQTSLSSI-GLPSWAQTPLASAGITTVQDLASASTFYI 124 Query: 468 ADIEG 472 I G Sbjct: 125 RAILG 129 >UniRef50_A4QP01 Pdcd11 protein n=4 Tax=Clupeocephala RepID=A4QP01_DANRE Length = 932 Score = 48.3 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 13/88 (14%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILRED------MLPRENFRPGDRVRGVLYSV 186 G+I+ G V + + + + +G + +I R P + F PG +V+ + SV Sbjct: 440 KVGQIVEGTVIDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLSV 499 Query: 187 RPEARGAQLFVTRSKPEMLIELFRIEVP 214 + + L +TR L +P Sbjct: 500 EAQKK--LLILTRK-----KALVESTLP 520 Score = 41.7 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 138 ITGVVKKVNRDNISLDLG-NNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLF 196 ++G V+ V +D+G ++A + ++ +++ G V ++ V+ R + Sbjct: 185 LSGCVESVEDHGYLVDIGIGGSKAFLPKKSTSSKQDLYVGQYVLVLIEDVKDSGR--VVR 242 Query: 197 VTRSKPEMLIE 207 ++++ ++ Sbjct: 243 LSQNPQALVKA 253 >UniRef50_Q58447 NusA protein homolog n=4 Tax=Methanocaldococcus RepID=NUSA_METJA Length = 183 Score = 48.3 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 3/116 (2%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH--TM 305 VGA +G G V+ + G+++DI+ + D+ +F+ N AP + + V Sbjct: 44 VGAAIGKGGENVKTAEEKF-GKKVDIIEYSDDWRKFIRNIFAPIQLDDVWVKRVGKDVVA 102 Query: 306 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 I + G G+N+ A ++ + + + + + A K Sbjct: 103 FIKINPKVRRAVFGEKGKNLERALKILKRHTKITKIKVIVENQKFKRKRAKRPVVK 158 >UniRef50_Q1IY12 RNA binding S1 n=9 Tax=Deinococci RepID=Q1IY12_DEIGD Length = 587 Score = 47.9 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 14/88 (15%) Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPREN---------FRPGDRVRGVLYS 185 G+I+ G V + ++ I++D+G E +I + + E ++PGD++ + Sbjct: 72 GDIVDGTVVFIGQEGIAVDVGAKVEGIIPL-NQIGDEPVTLEQAQQMYKPGDQIEAYVVR 130 Query: 186 VRPEARGAQLFVT--RSKPEMLIELFRI 211 V Q+ ++ R+ + + Sbjct: 131 VDLANN--QIVLSKKRADQDKGWRVLER 156 Score = 45.2 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 13/116 (11%) Query: 87 LNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVN 146 + +GD V+ Q+ V R + + + Q V+++ G+ + G V + Sbjct: 291 VKVGDKVQVQVIDVDEGRERINLSMKSLTQD----PWEGAVEKYH--IGQRVRGKVTNLT 344 Query: 147 RDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYSVRPEARGAQL 195 ++L E ++ +M P E + GD V V+ + P+ R L Sbjct: 345 NFGAFVELEPGLEGLVHVSEMSWTKRVRHPNEVLKEGDEVEAVILRIDPKERRISL 400 >UniRef50_Q5SJ64 DNA polymerase beta family (X family) n=4 Tax=Thermus RepID=Q5SJ64_THET8 Length = 575 Score = 47.9 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 4/103 (3%) Query: 381 LEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGV 440 +EE+A + L+E+ G+ E + E + + + +E S + +++ + GV Sbjct: 44 IEEIAEKGKEALMELPGVGPDLAEKILEFLRT--GKVRKHEELSRKVPRGVLEVMEVPGV 101 Query: 441 DRDLAFKLAAR-GVCTLEDL-AEQGIDDLADIEGLTDEKAGAL 481 A L G+ +LE L A DL ++G ++A + Sbjct: 102 GPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERI 144 >UniRef50_UPI0001C3232B RNA binding S1 domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3232B Length = 529 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 41/77 (53%), Gaps = 8/77 (10%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVR 187 EG+++TG V ++++D + +D+G +E VI ++ P++ G+ V ++ + Sbjct: 40 EGDVVTGHVVRIDKDEVLVDIGYKSEGVIPSNELSIRKSVDPKDEVEMGEEVDALVLT-- 97 Query: 188 PEARGAQLFVTRSKPEM 204 E + +L +++ + Sbjct: 98 KEDQDGRLILSKKRARF 114 >UniRef50_A4YCN4 DNA repair and recombination protein radA n=12 Tax=Sulfolobaceae RepID=RADA_METS5 Length = 324 Score = 47.5 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 4/96 (4%) Query: 349 QAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRE 408 Q E I T + + L E G+STLE +A ++L G+ T + + + Sbjct: 4 QVEEKKRIKTVKDLSGVGQAVLNKLTEAGYSTLESIAVASPQDLSTAAGIPITTAQRIIK 63 Query: 409 RAKNALA----TIAQAQEESLGDNKPADDLLNLEGV 440 A++AL T + ++E K L+G+ Sbjct: 64 EARDALDIRFKTALEIEQERASVKKITTGSQALDGL 99 >UniRef50_A8AB83 DNA repair and recombination protein radA n=16 Tax=Archaea RepID=RADA_IGNH4 Length = 327 Score = 47.5 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 2/84 (2%) Query: 348 HQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALR 407 A + + + A L++ G+ T+E LA +EL+ I G+ T + + Sbjct: 3 QVATEEKRPTSVAELPGVGPSTAAKLIDAGYGTIEALAVATPEELVAI-GIPLTTAQKII 61 Query: 408 ERAKNALA-TIAQAQEESLGDNKP 430 A+ L A+E L Sbjct: 62 RAARQMLDIRFRTAKEVKLERMNL 85 >UniRef50_A8F7S1 RNA binding S1 domain protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F7S1_THELT Length = 539 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 22/125 (17%) Query: 120 EAERAMVVDQFREHE----GEIITGVVKKVNR-DNISLDLGNNAEAVILREDMLPR-ENF 173 E E+ ++ + G ++ VV ++N + IS+D G E +I + +++ E + Sbjct: 4 EHEKMENFQEYLDFVETNPGSVVEAVVTRINPAEGISVDFGGKGEGIIQQNELIHSIEKY 63 Query: 174 RPGDRVRGVLYSVRPE-------ARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 G +++ + + E + + R L + + ++P ++ K Sbjct: 64 SVGQKIKAQILKINDEEGYALLSEKRPYI---REMRNTLRKAYESKIP------VKGKIV 114 Query: 227 ARDPG 231 PG Sbjct: 115 QTIPG 119 Score = 44.0 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 38/80 (47%), Gaps = 8/80 (10%) Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGD 177 VV ++ EG++++G + ++ + ++L + + + ++ P + F+ D Sbjct: 352 EEVVQKYN--EGDVVSGKIVRILPAGVIVELEDGVSGFVPKSELSWNKVKDPTDLFKEKD 409 Query: 178 RVRGVLYSVRPEARGAQLFV 197 R+ + S+ + R +L V Sbjct: 410 RLNVKILSIDKQKRRMRLSV 429 >UniRef50_Q67NT8 30S ribosomal protein S1 n=1 Tax=Symbiobacterium thermophilum RepID=Q67NT8_SYMTH Length = 441 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 13/97 (13%) Query: 132 EHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRE-------NFRPGDRVRGVLY 184 G+I+ G V +V+ D+I +D+G +E +I ++ R + GD V+ V+ Sbjct: 53 PKPGDIVRGQVVRVSDDSIMVDVGYKSEGIIPLNELSHRPLRSAHDAGLKVGDEVQVVVL 112 Query: 185 SVR-PEARGAQLFVTRSKPEM----LIELFRI-EVPE 215 SV G ++ R+ ++ + F EV E Sbjct: 113 SVDTKGEGGLRISKRRADEQLAWAEVERKFEAGEVIE 149 >UniRef50_B9L032 30S ribosomal protein S1 n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L032_THERP Length = 443 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 7/95 (7%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILRED---MLPRE--NFRPGDRVRGVLYSVR 187 G+++ G V V+R+ I +D+G E V+ + + P E RPGDRV + Sbjct: 43 RYGDVVEGEVMHVDREKILVDIGGKCEGVVPSREFQTLSPEELGRLRPGDRVLVFVLQPE 102 Query: 188 PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIE 222 +A A L + R++ E EV E VIE Sbjct: 103 DQAGQAILSIDRARQEKTWRRL-QEVFE-AGGVIE 135 Score = 44.8 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 9/132 (6%) Query: 78 EAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEI 137 E ++ D + +G ++ +I + R +++ VQ+ R+A +A +++ EGE Sbjct: 170 EVSKQADMARMVGQRLKLKIIEINRHRNRLILSERQAVQEQRDAMKAQLIETL--REGET 227 Query: 138 ITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEAR 191 G V + + +D+G A+ ++ ++ P E R GD V ++ SV PE R Sbjct: 228 RRGRVTSIADFGVFVDIG-GADGLVHLSEISWTRVKHPSEVLRVGDEVDVMVLSVNPEQR 286 Query: 192 GAQLFVTRSKPE 203 L + R++PE Sbjct: 287 KIALSIRRTQPE 298 >UniRef50_C6JH83 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C6JH83_9FIRM Length = 302 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 8/95 (8%) Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLP---- 169 + + +++ E + + EG+I+TG V V+ + +DL AE +I ED Sbjct: 1 MAESMKDYETELEASFKKIEEGDILTGTVISVDEKEVVVDLKYYAEGIIPAEDYSREPGF 60 Query: 170 --RENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 +E GD V + VR + + ++R++ Sbjct: 61 SLKEQVNVGDEVSATV--VRKDDGNGNILLSRTEA 93 >UniRef50_A9B766 RNA binding S1 domain protein n=6 Tax=Chloroflexi (class) RepID=A9B766_HERA2 Length = 397 Score = 46.7 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 56/121 (46%), Gaps = 9/121 (7%) Query: 89 LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD 148 +G + ++ V DR +++ +Q+ R++++ +++ G ++TG V ++ Sbjct: 166 VGQNIPLKVIEVDRDRNRLVLSERAAMQRWRQSQKERLLETLEP--GAVVTGRVNQLTPF 223 Query: 149 NISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 +DLG A+ + ++ PRE +PG V+ + V + L + R +P Sbjct: 224 GAFIDLG-GADGLAHISELSWQRVNHPREVLQPGQEVQVYVLEVDRDRERIGLSLRRLQP 282 Query: 203 E 203 + Sbjct: 283 D 283 Score = 43.3 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Query: 127 VDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRED--MLPRE---NFRPGDRVRG 181 D R G++ G+V +V I +D+G E VI +D LP E + GD ++ Sbjct: 21 YDYQRPERGQLREGIVMRVEDSQILVDIGAKHEGVIPNQDLRRLPPELVSGIKNGDTLQV 80 Query: 182 VLYSVRPEARGAQLFVT 198 + PE++ +L ++ Sbjct: 81 YVME--PESKEGELVLS 95 >UniRef50_Q5UPZ0 DNA ligase n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=DNLJ_MIMIV Length = 636 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 28/151 (18%) Query: 267 GGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVR 326 G I++V + ++ + + PA + E V +NG N+ Sbjct: 349 SGAIINVVR-SGDVIPYITHVVKPAKKPDLPNIE-------YVWD--------KNGVNII 392 Query: 327 LASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAY 386 LA ++ + + K + I +I E T LVE GF T+ ++ Sbjct: 393 LA--------DINDNETVIIKRLTKFMRNIG----AENISEGITTRLVEAGFDTIPKIIN 440 Query: 387 VPMKELLEIEGLDEPTVEALRERAKNALATI 417 + ++ L I+G E E + +N+L + Sbjct: 441 MTEEDFLTIDGFQERLAEKIYNNLQNSLDNL 471 >UniRef50_C1SLB2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P n=2 Tax=Bacteria RepID=C1SLB2_9BACT Length = 848 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 16/102 (15%) Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLP-RE-NFRPGDRVRGVLYSVRP 188 + + I+ G V ++N +++ +++G E V+ + + E + GD V + + Sbjct: 310 QPEKNSIVQGTVAQINENDVLVNIGFKTEGVVPSAEFMKDGEITIKVGDEVDVLFLGI-- 367 Query: 189 EARGAQLFVTRSKPE------MLIELFRIEVPEIGEEVIEIK 224 G + ++R E + + E P +EIK Sbjct: 368 AGGGGYVKLSRKAIEKEADWIEVEKALEEETP------VEIK 403 >UniRef50_B5YH71 30S ribosomal protein S1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH71_THEYD Length = 534 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEAR 191 GEI V K + +D+ E ++ ++ + GD ++ ++ V E R Sbjct: 462 KIGEIYNAKVIKKTEHGLFVDIEGIVEGLVYNSEIDKNRTVKEGDEIKVIVVKVDKEKR 520 Score = 41.3 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 6/88 (6%) Query: 116 QKVREAERAMVVDQFREHE--GEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRE-- 171 Q + E + + H GEII G + V D + +D+G E +I + E Sbjct: 4 QLSEKQELESLYEGSLSHIERGEIIKGKIMGVRNDGVIVDVGYKFEGIIPLNEFSEEELK 63 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTR 199 N + D + + + + ++R Sbjct: 64 NIKEADEIEVFIEKIDDAQG--IISLSR 89 >UniRef50_A9KLR6 Hydroxymethylbutenyl pyrophosphate reductase n=58 Tax=Bacteria RepID=A9KLR6_CLOPH Length = 643 Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 31/170 (18%) Query: 57 DTFRRWLV----VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIE----------SVTF 102 + F V V V + ++ AR + D E ++ F Sbjct: 385 EAFNNKEVLKAKVAAVLDGGLSVIVDEARIFIPASLASDTYEKNLDKFKDQEIEFVISEF 444 Query: 103 D---RITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAE 159 + R KQ++V K +E +A+ + G+++ G VK V +DLG A+ Sbjct: 445 NPKRRRIIGDRKQLLVAKKQELSKALFA---KIKVGDVVEGTVKNVTDFGAFIDLG-GAD 500 Query: 160 AVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPE 203 ++ +M P++ F+ GD V+ + + +G ++ ++ PE Sbjct: 501 GLLHISEMSWGRIESPKKVFKVGDTVKAFIKDI----QGEKIALSLKFPE 546 >UniRef50_Q18EU1 DNA repair and recombination protein radA n=165 Tax=Halobacteriaceae RepID=RADA_HALWD Length = 343 Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 8/96 (8%) Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL-- 414 D + + LV+ GF + + +A E+ + E T + A++A Sbjct: 4 DELEDLPGVGPATSDKLVDAGFESYQAIAVASPAEMSNTADVGESTASDIINAARDAADV 63 Query: 415 ------ATIAQAQEESLGDNKPADDLLNLEGVDRDL 444 A + Q +EE + ++ L G + Sbjct: 64 GGFETGAAVLQRREEIGKLSWKIPEVDELLGGGIET 99 >UniRef50_C1SHA0 Putative uncharacterized protein n=2 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHA0_9BACT Length = 227 Score = 45.6 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 28/156 (17%) Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDL----GNNAEAVILREDMLP--RENFRP 175 R + + ++ G V++V+ +N+ L++ V+ + + P R F+ Sbjct: 88 HRKEIY--LKSFMNSLVKGEVREVSAENVLLNVYLGVNYRVTGVLHKMHITPKMRGTFQI 145 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 G +R ++ A ++ + +++ +LF E+ ++ R G R+ Sbjct: 146 GQEIRSLVIGTEKLADDVVFTLSLTSRKLVEKLFE-------EQGYSVRCVHRIVGGRSI 198 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERI 271 I P G ++++S EL ERI Sbjct: 199 I----QSTNHIPRGT--------IKSLSDELS-ERI 221 >UniRef50_A7HME7 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HME7_FERNB Length = 854 Score = 45.6 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 54/119 (45%), Gaps = 10/119 (8%) Query: 96 QIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLG 155 ++ + + + ++ Q ++E E V + G+I+ G+V ++ +++DLG Sbjct: 289 ELYMEDLNNLKQEVLEESFEQLLKEHENMNQVGR-----GKIVEGIVTEITPTGLTIDLG 343 Query: 156 NNAEAVILREDMLPR-ENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEV 213 V+ E++ ++ G++++ + + E A ++ KP + ++ E+ Sbjct: 344 GKVTGVVPLEELFKELNEYKVGEQIKVRVEKINEEDGTA--ILSAKKP--MEKIIFDEI 398 Score = 41.0 bits (95), Expect = 0.096, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 68/155 (43%), Gaps = 15/155 (9%) Query: 75 ITLEAARYEDESLNLGDYVEDQIE-SVTFDRITTQTAKQVIVQKVREAERAMVVDQFREH 133 + LE E +G+ ++ ++E D +AK+ + ++ D+ ++ Sbjct: 350 VPLEELFKELNEYKVGEQIKVRVEKINEEDGTAILSAKKPM--------EKIIFDEIQKA 401 Query: 134 E--GEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR-PGDRVRGVLYSVRPEA 190 + G+ ++G + + + + L N EA + + RE+ P ++++ + S Sbjct: 402 KENGKPVSGKIIERIKGGYRVILENVVEAFLPGSESNIREDEEIPREKMQFAVISYETRG 461 Query: 191 RGAQLFVTRSK--PEMLIELFRIEVP-EIGEEVIE 222 R + V+R K +++ E F P ++ E ++E Sbjct: 462 RKTNIVVSRKKLFQKLIDEFFSNRKPGDVVEGIVE 496 >UniRef50_C6XS49 RNA binding S1 domain protein n=62 Tax=Bacteroidetes RepID=C6XS49_PEDHD Length = 644 Score = 45.6 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGA 193 +GEII+G V +N ++ L++G ++ ++ + + + GD+V + PE Sbjct: 87 QGEIISGTVVSINNKDVVLNVGFKSDGLVSTSEFRDTPDLKVGDKVDVFVE--APEDANG 144 Query: 194 QLFVTRSKPE 203 QL ++R + + Sbjct: 145 QLILSRKRAK 154 >UniRef50_C7RHT6 Hydroxymethylbutenyl pyrophosphate reductase n=8 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RHT6_ANAPD Length = 686 Score = 45.6 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 24/215 (11%) Query: 20 REKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEA 79 +E+ +LE +L K+ + + V+ D F + E+T E Sbjct: 279 KEEFMNSLEDSLKKIYPKEIVKGTVIDVKDDE------VFVDIQFRADGIIKLDEMTEEE 332 Query: 80 ARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHE--GEI 137 A+ S N+GD ++ + + R E V E E+ Sbjct: 333 AKDPKNSFNVGDEIDVFVIKLDDGEGNVSL-------STRRVEGMKVWKDLAEKAENDEL 385 Query: 138 ITGVVKKVNRDNISLDLGNNAEAVILREDM----LPRENFRPGDRVRGVLYSVRPEARGA 193 + GVV N+ +++++ + + + G+ + S+ Sbjct: 386 VHGVVSGFNKGGLTVNV-EGINGFVPASQIATYFVKNFKKFVGEEWDLKIISIDERKN-- 442 Query: 194 QLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAAR 228 +L ++R E++ + E+ E + AR Sbjct: 443 RLVLSRK--EVVEDELDGLWEELEEGQVVTGKVAR 475 >UniRef50_B8JIP9 Programmed cell death 11 n=5 Tax=Clupeocephala RepID=B8JIP9_DANRE Length = 1816 Score = 45.2 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 13/88 (14%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILRED------MLPRENFRPGDRVRGVLYSV 186 G+I+ G V + + + + +G + +I R P + F PG +V+ + V Sbjct: 443 KVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLLV 502 Query: 187 RPEARGAQLFVTRSKPEMLIELFRIEVP 214 + + L +TR L +P Sbjct: 503 EAQKK--LLILTRK-----KALVESTLP 523 Score = 41.7 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 138 ITGVVKKVNRDNISLDLG-NNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLF 196 ++G V+ V +D+G +A + ++ +++ G V ++ V+ R + Sbjct: 188 LSGCVESVEDHGYLVDIGIGGTKAFLPKKSTSSKQDLYVGQYVLVLIEDVKDSGR--VVR 245 Query: 197 VTRSKPEMLIE 207 ++++ ++ Sbjct: 246 LSQNPQALVKA 256 >UniRef50_A3MSA1 Putative ski2-type helicase n=5 Tax=Thermoproteaceae RepID=HELS_PYRCJ Length = 708 Score = 45.2 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 325 VRLASQLSGWELNVMTVDDLQAKH-QAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEE 383 +LA +L G E + ++ + A+ + T + A L G+ TLE+ Sbjct: 611 AKLA-RLVGREEHGKRLEVVTARVVYGVREELLGLVTSLRGVGRVRARTLYNFGYRTLED 669 Query: 384 LAYVPMKELLEIEGLDEPTVEALRERAKNALA 415 +A ++E+ + G E E++ E+A+ LA Sbjct: 670 IARATVREIASLPGFGEKLAESVIEQARQMLA 701 >UniRef50_A8P9F6 KH domain containing protein n=1 Tax=Brugia malayi RepID=A8P9F6_BRUMA Length = 439 Score = 45.2 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 40/180 (22%) Query: 247 PVGACVGMRGARVQAVSTELG---------------GERI--------------DIVLWD 277 VGA +G G ++ + +E G ERI D++L Sbjct: 44 AVGALIGKGGETMRNLKSESGCRLQMSKNQEVYPGTNERICLVKGKIASVLKVSDVIL-- 101 Query: 278 DNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELN 337 + + V N P+D+ E K+ M + V + IG++G ++ + +G + Sbjct: 102 EKIREKVDNN-TPSDIFDHKGMERKNEMKLVVPNTSAGMVIGKSGARIKEIREQTGANIQ 160 Query: 338 VMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEG 397 V Q ++ + DE L LE++A P + I Sbjct: 161 VYPKAGSQEAKVSQERIITIAAEQ----DEVLMDALQRV----LEKVAADPQHAMATIPD 212 >UniRef50_Q54L26 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54L26_DICDI Length = 804 Score = 45.2 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 16/109 (14%) Query: 117 KVREAERAMVVDQFREHE-GEIITGVVKKVNRDNISLDLGNNAEAVILREDML------P 169 + RE E+ + + G ++ GV++ V D++ ++L + V+ R M P Sbjct: 543 RTRELEKK--FYSYNDLSCGMVVQGVIRYVRADSLEVELATSIHGVVARHHMADTNITDP 600 Query: 170 RENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE 218 E F+ G V+ + +V P+ + QL + L E P I + Sbjct: 601 LEFFKVGATVKVRIINVEPDKKRLQLTLK-------KSLIYSEYPIITD 642 >UniRef50_D2R4L6 Ribosomal protein S1 n=7 Tax=Planctomycetales RepID=D2R4L6_9PLAN Length = 600 Score = 44.8 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 64/178 (35%), Gaps = 23/178 (12%) Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 VD + I L+ +E +G V IE + D ++ R+A++ Sbjct: 61 VDIGFKSEGSIPLDEWEEGEEPPQVGQLVRVLIEDLE-DETAAPEDGGMVRISKRKAKKL 119 Query: 125 MVVDQFREHE--GEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV--- 179 + + G+++TG V + + + +D+ + + R GD + Sbjct: 120 DAWKEMMDRIKEGQVVTGTVSRKIKGGLLVDI-EGVNVFLPASQVDIRRPADIGDYIGRT 178 Query: 180 -RGVLYSVRPEARGAQLFVTRSKPEMLIE---------LFRIEVPEIGEEVIEIKAAA 227 + + + R + V+R ++ L +E+ ++ + V+ K A Sbjct: 179 VQCEVLKIDEARRN--IVVSRRS--LIERQREEDREALLKELEIGQVRKGVV--KNIA 230 Score = 42.1 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPREN-FRPGDRVRGVLYSVRPEARG 192 +I+ G V +V + +D+G +E I ++ E + G VR ++ + E Sbjct: 43 VNKIVEGRVLRVADGMVLVDIGFKSEGSIPLDEWEEGEEPPQVGQLVRVLIEDLEDETAA 102 Query: 193 AQ 194 + Sbjct: 103 PE 104 Score = 41.3 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRPGDRVRGVLYSVRP 188 G++++G V K+ + + L + E ++ ++ P + + GD++ + V Sbjct: 479 GQVVSGAVTKITNFGVFVGLEDGLEGLLHISELADHKVENPEDVVKVGDKIDVKILRVDI 538 Query: 189 EARGAQLFVTRS 200 + R ++ ++R Sbjct: 539 DER--KIGLSRK 548 >UniRef50_B6AR90 Ribosomal protein S1 n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AR90_9BACT Length = 591 Score = 44.8 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 11/133 (8%) Query: 71 PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 P +I L R D +G ++ +I + R +++V++++ R+ + + +D Sbjct: 156 PGSQIDLRPVRDMDRL--IGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDAL 213 Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLY 184 EGEI+ G+VK + +DLG + ++ DM P+E GD+V V+ Sbjct: 214 --KEGEILEGIVKNITDYGAFIDLG-GIDGLLHITDMSWGRVTNPQEFMNVGDKVNVVVL 270 Query: 185 SVRPEARGAQLFV 197 E L + Sbjct: 271 KHDKETGRVSLGL 283 >UniRef50_A2SR54 DNA repair and recombination protein radA n=31 Tax=Archaea RepID=RADA_METLZ Length = 329 Score = 44.8 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 360 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 412 + + A L + G+ T+E +A +L E L E T + + + A+ Sbjct: 7 EEIPGVGPATADRLRDAGYITVESIATATPVDLAEAAELGESTTKKIIKAARE 59 >UniRef50_D1VSI0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSI0_9FIRM Length = 725 Score = 44.8 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 8/72 (11%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSV 186 +GEI+TG V V + + ++LG ++ +I +E++ P + ++ GD + + + Sbjct: 289 KKGEIVTGEVLYVTDNEVMVNLGYRSDGIISKEELSKNTDAKPSDLYKQGDEIEVFVLKM 348 Query: 187 RPEARGAQLFVT 198 + ++ Sbjct: 349 DDGDGN--VVLS 358 >UniRef50_A8Q764 KH domain containing protein n=1 Tax=Brugia malayi RepID=A8Q764_BRUMA Length = 634 Score = 44.8 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 59/164 (35%), Gaps = 12/164 (7%) Query: 281 AQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 AQ+V N + A +I + T+ + V + IG G ++R A +L+G +L + Sbjct: 355 AQYVRNTVGTA--VAITGQQQVRTVHMWVPNNMVGALIGAKGAHIRSAIRLTGAQLRIEG 412 Query: 341 VDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDE 400 + K ++ + K + E LVE E + + E E + Sbjct: 413 GGTNKDKKESRGEGNNEKSDKDNAVTELVKKELVEAD----ERVNELDKNENNSDEKQNG 468 Query: 401 PTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDL 444 E + + A L+ D + L+ + G D Sbjct: 469 KKEENVEKVASPKLSKD------KDKDVHAEERLVTITGNDPQQ 506 >UniRef50_Q06609 DNA repair protein RAD51 homolog 1 n=385 Tax=Eukaryota RepID=RAD51_HUMAN Length = 339 Score = 44.8 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420 + I+ + L E GF T+E +AY P KEL+ I+G+ E + + A + Sbjct: 29 EQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLV---PMG 85 Query: 421 QEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCT 455 + ++ +++ + ++L KL G+ T Sbjct: 86 FTTATEFHQRRSEIIQITTGSKEL-DKLLQGGIET 119 >UniRef50_B8J034 RNA binding S1 domain protein n=2 Tax=Desulfovibrio RepID=B8J034_DESDA Length = 489 Score = 44.8 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 58/141 (41%), Gaps = 13/141 (9%) Query: 71 PTKEITLEAARYEDESLNLGDYVED-QIESVTFDRITTQTAKQVIVQKVREAERAMVVDQ 129 P +I L +A ED G ++ I R + ++ ++ + R+ + ++++ Sbjct: 142 PGSQIGLASA--EDAETLTGRTLQFLVIRVENRGRNIVVS-RRALLDRERQEQLEALLEK 198 Query: 130 FREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVL 183 G+ + G + + ++L E +I ++ P E GD VR + Sbjct: 199 LG--VGDTVEGKISRFAPFGAFMELDTAVEGMIHLSELSWSRVGAPDEAVSLGDTVRAKV 256 Query: 184 YSVRPEARG-AQLFVTRSKPE 203 S+ +G ++ ++R + E Sbjct: 257 LSISKSDKGQVRIALSRKQAE 277 Score = 43.3 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 7/71 (9%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML---PRENFRPGDRVRGVLYSVRPE 189 G+ +TG V + D++ +D+G + ++ R+D+L +E PG+ V + V + Sbjct: 33 QAGQKVTGTVIAITGDSVFVDVGIKVDGIMERKDILDADGKETTAPGEPVEAWVIGVSAQ 92 Query: 190 ARGAQLFVTRS 200 ++ ++RS Sbjct: 93 ----EIRLSRS 99 >UniRef50_Q3YRK4 SSU ribosomal protein S1P n=21 Tax=Rickettsiales RepID=Q3YRK4_EHRCJ Length = 567 Score = 44.8 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Query: 122 ERAMVVDQFRE---HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR---P 175 E + +F + EG+II G + +++ +++D G +E+++ ++ ++++ Sbjct: 44 EFQNALKEFIDDSVKEGQIIEGTIVCIDKGYVTIDSGLKSESIVSLKEFELGDDYQNIGI 103 Query: 176 GDRVRGVLYSVRPEARGAQLFVTR 199 G +V+ L + E R + ++R Sbjct: 104 GSKVKLYLEKI--EGRNGSVVLSR 125 >UniRef50_B9MRX3 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MRX3_ANATD Length = 663 Score = 44.4 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 47/94 (50%), Gaps = 8/94 (8%) Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR------E 171 +++ ER + GE++ G + KV D + +D+G AE +I +++++ + Sbjct: 288 LKDFERLIDRSFLTVQRGEVVNGRIIKVEEDYLLVDIGYKAEGIIYKDEVIKNGNVNLKD 347 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEML 205 F+ G+ + V+ ++ + +++ + ++L Sbjct: 348 LFKIGEVIEAVV--IKESDEEGNVVLSKYRADIL 379 >UniRef50_A2BXB3 Putative uncharacterized protein n=2 Tax=Prochlorococcus marinus str. MIT 9515 RepID=A2BXB3_PROM5 Length = 248 Score = 44.4 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%) Query: 356 IDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRE 408 D + + A +L + G+ ++E + P +ELL I+G+ + VE L+ Sbjct: 196 TDLLCELDGVGGKTAGLLWDAGYLSIEAVKNAPQEELLNIKGIGKKLVEKLKS 248 >UniRef50_B0SDD9 30S Ribosomal protein S1 n=6 Tax=Leptospira RepID=B0SDD9_LEPBA Length = 385 Score = 44.4 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 36/72 (50%), Gaps = 8/72 (11%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM-LPREN-----FRPGDRVRGVLYSV 186 E +I++G V+ + + + LG + ++ ++ +P+ F+PG ++ + + Sbjct: 272 KESDIVSGTVESIKPFGLFVRLGEDFSGLVPNKESGVPQRTPLNTVFQPGQKLEVFVLEI 331 Query: 187 RPEARGAQLFVT 198 PE R Q+ ++ Sbjct: 332 NPEKR--QIALS 341 >UniRef50_Q977W1 Topoisomerase V n=1 Tax=Methanopyrus kandleri RepID=Q977W1_METKA Length = 984 Score = 44.4 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 14/151 (9%) Query: 350 AEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRER 409 +A + + L E GFS +E+A + E D T L ER Sbjct: 529 EKADELKRKYGSASAVRRLPVEELRELGFSD-DEIAEIKGIPKKLREAFDLETAAELYER 587 Query: 410 -----------AKNALATIAQAQEESLGDNKPA-DDLLNLEGVDRDLAFKLAARGVCTLE 457 + + L + + + P LLN+EGV LA ++ LE Sbjct: 588 YGSLKEIGRRLSYDDLLELGATPKAAAEIKGPEFKFLLNIEGVGPKLAERILEAVDYDLE 647 Query: 458 DLAEQGIDDLAD-IEGLTDEKAGALIMAARN 487 LA ++LA+ +EGL +E A ++ AAR Sbjct: 648 RLASLNPEELAEKVEGLGEELAERVVYAARE 678 Score = 43.7 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLE-IEGLDEPTVEALRERAKNALA 415 + A ++E LE LA + +EL E +EGL E E + A+ + Sbjct: 622 KFLLNIEGVGPKLAERILEAVDYDLERLASLNPEELAEKVEGLGEELAERVVYAARERVE 681 Query: 416 TIAQAQEESLGDNKPADDLLNL--EGVDRDLAFKLAARG-VCTLEDLAEQGIDDLADIEG 472 + ++ + + + + L EG R L + G V L + AE L ++ G Sbjct: 682 SRRKSGRQERSEEEWKEWLERKVGEGRARRLIEYFGSAGEVGKLVENAEVS--KLLEVPG 739 Query: 473 LTDEKAGALI 482 + DE L+ Sbjct: 740 IGDEAVARLV 749 >UniRef50_Q30ZT8 SSU ribosomal protein S1P n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30ZT8_DESDG Length = 482 Score = 44.4 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 63/190 (33%), Gaps = 18/190 (9%) Query: 18 LPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITL 77 + R + EA + K + V V I R + F F E E+ Sbjct: 175 VSRRVLLEAQQEESRKEYMKTLNEGDVVDVCITRLTN-FGAFAELAPGVEGLIHISELGW 233 Query: 78 EAARYEDESLNLGDYVE---DQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHE 134 + DE++ GD + +IES +AKQV+ E V D+ Sbjct: 234 ARVQSADEAVTQGDTLRAKVLKIESTAKGLRIALSAKQVM-----EDPWNTVADRLAA-- 286 Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR-------PGDRVRGVLYSVR 187 G ++ G V + +++ E ++ +M PGD V + + Sbjct: 287 GTVVEGKVVRCTPFGAFVEVLPGIEGLVHISEMSWTRRILKAEDVVIPGDTVSVKIKDID 346 Query: 188 PEARGAQLFV 197 R L + Sbjct: 347 SAKRRISLSL 356 >UniRef50_C1DT56 Ribosomal protein S01 n=3 Tax=Sulfurihydrogenibium RepID=C1DT56_SULAA Length = 573 Score = 44.4 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 67/148 (45%), Gaps = 17/148 (11%) Query: 71 PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 P EI+ + +R +E L +GD VE ++ + K ++ K+ E D+F Sbjct: 213 PKSEISWDKSRKVEEVLKVGDEVEVVVK-------EIKDKKPILSLKLLE---GNPWDKF 262 Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLP------RENFRPGDRVRGVLY 184 ++ G+++ +K +N+ + +DLG E I ++ ++N + GD V ++ Sbjct: 263 DKNIGDVVEVKIKDINKGGLVVDLG-LLEGFIPNSEISHFDYVKAKKNLKVGDTVVAKIF 321 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIE 212 + E +L + +++ L + + Sbjct: 322 EIDKEKGKVKLSIKQAQENPLEKFLKEN 349 >UniRef50_Q027A8 SSU ribosomal protein S1P n=2 Tax=Acidobacteria RepID=Q027A8_SOLUE Length = 572 Score = 44.4 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 19/121 (15%) Query: 87 LNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE---RAMVVDQFREHEGEIITGVVK 143 LN+GD VE +I + AK+ I +++ + +V D++ GE +TG V Sbjct: 257 LNVGDKVEAKI-------LKVDPAKKRISLGLKQLQPHPWDLVADKY--KVGERVTGSVT 307 Query: 144 KVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYSVRPEARGAQLF 196 +V ++L E ++ +M P + +PGD+V V+ V R L Sbjct: 308 RVTDFGAFVELEKGIEGLVHLSEMSWSKKIRRPADMVKPGDQVEVVVLGVNAADRRISLG 367 Query: 197 V 197 + Sbjct: 368 L 368 Score = 42.5 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 8/87 (9%) Query: 118 VREAERAMVVDQFRE-HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PR 170 + E ERA ++ + EGEI+ G ++ + +D+G +A++ D+ P Sbjct: 196 LEEEERASKEQRYSQVKEGEIVHGTIRSLTDYGAFVDIG-GVDALLHVADISWGRVNKPA 254 Query: 171 ENFRPGDRVRGVLYSVRPEARGAQLFV 197 + GD+V + V P + L + Sbjct: 255 DVLNVGDKVEAKILKVDPAKKRISLGL 281 >UniRef50_Q0EYT6 Ribosomal protein S1 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYT6_9PROT Length = 621 Score = 44.4 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPREN--FRPGDRVRGVLYSVRPEA 190 G + G V V + ++L + +A + + +PR++ + G V + V + Sbjct: 516 KRGNSVNGTVVDVKPAGVVVELADGVQAFMPMRE-VPRDHGELKVGSEVEAKIVEVNNKR 574 Query: 191 RGAQLFVT 198 R Q+ ++ Sbjct: 575 R--QVTLS 580 >UniRef50_B0K198 RNA binding S1 domain protein n=7 Tax=Thermoanaerobacter RepID=B0K198_THEPX Length = 365 Score = 44.4 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 14/138 (10%) Query: 67 EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMV 126 +V P ++ L +E LG + +I + + K+V+ RE + + Sbjct: 126 KVFIPASQLELHYVDKLNEY--LGKTLRLRIIEYIPGKKIVGSQKEVLK-LEREKAKKAL 182 Query: 127 VDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVR 180 + EG+I+ G VK + +D+G + I ++ PRE GD+V Sbjct: 183 LSNL--KEGDIVEGRVKNIIDKGAFVDIG-GFDGFIPLSEISWERIKNPREVLGMGDKVS 239 Query: 181 GVLYSVRPEARGAQLFVT 198 + V + ++ ++ Sbjct: 240 IYILKVDE--KNEKITLS 255 >UniRef50_O73946 Putative ski2-type helicase n=3 Tax=Pyrococcus RepID=HELS_PYRFU Length = 720 Score = 44.4 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 326 RLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELA 385 +A L +E+ V ++ L+ + + + + + A L GF ++E+++ Sbjct: 616 EIAKVLGAYEI-VDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGFRSIEDIS 674 Query: 386 YVPMKELLEIEGLDEPTVEAL 406 +ELL+IEG+ TVEA+ Sbjct: 675 QARPEELLKIEGIGVKTVEAI 695 >UniRef50_C1JJY0 ORF1 n=1 Tax=Halorubrum pleomorphic virus 1 RepID=C1JJY0_9VIRU Length = 500 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRE 408 DT + + E L G TL ++ + E+ I+G+ E E L++ Sbjct: 409 DTLQEVPGLGETKLDRLEAHGIQTLSDVRLASVDEIASIDGISESFAEKLKD 460 >UniRef50_C0QT24 Ribosomal protein S01 n=1 Tax=Persephonella marina EX-H1 RepID=C0QT24_PERMH Length = 550 Score = 44.0 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 21/156 (13%) Query: 54 GDFDTFRRWL-VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQI--ESVTFDRITTQTA 110 G R + VD I LE A + + N+G ++ + E R Sbjct: 361 GKIKEIRNKIAFVDLGKDVEGVIHLEDATWNPKIKNIGQVLKGKRLREFKVLGREK-DKV 419 Query: 111 KQVIVQKVREAERAMVVDQFREH--EGEIITGVVKKVNRDNISLDLGNNAEAVILREDM- 167 + I Q R ++F G++I VKK+ +D+ + E I ++ Sbjct: 420 RLGIKQF-----RDNPWEEFFSKHSVGDVIKAKVKKLIDRGAFVDINEDVEGFIPLSEIS 474 Query: 168 -----LPRENFRPGDRVRGVLYSVRPEARGAQLFVT 198 +P + G + + + +G + ++ Sbjct: 475 KEKIEIPSDKLSLGQEIEAKIIKI----KGHDIILS 506 >UniRef50_D1B5G8 RNA binding S1 domain protein n=3 Tax=Synergistaceae RepID=D1B5G8_THEAS Length = 504 Score = 44.0 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 7/103 (6%) Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR---ENF---RPGDRVRGVLYSVRP 188 G ++ G V D +D+G E + R + R E + GDR+R + +V Sbjct: 35 GSVVEGTVVDAREDGWLVDVGYKCEGFLPRREWSHRAIVEKVGEPQVGDRIRVQVTNVG- 93 Query: 189 EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 + AQL ++R + E +E +VIE++ + G Sbjct: 94 QGEEAQLNLSRWRCEFDERWNALEEKLAQSDVIEVEGIRKVKG 136 >UniRef50_B5IRN8 DHH family n=4 Tax=Thermococcaceae RepID=B5IRN8_9EURY Length = 742 Score = 44.0 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEAR 191 G I GV+ +V R + + L + +I R+D+L + ++PG + + VRPE R Sbjct: 132 IGRIYKGVIDRVERFGVFVKLNPHVVGLIKRKDLLGGKEYKPGMEILVQVLDVRPEKR 189 >UniRef50_D1ZWZ1 Whole genome shotgun sequence assembly, contig_1889 n=1 Tax=Sordaria macrospora RepID=D1ZWZ1_SORMA Length = 150 Score = 44.0 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 5/72 (6%) Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILRED-MLPREN--FRPGDRVRGVLYSVR 187 EG ++ G V + D +D+G +E + + P + + GD V + V Sbjct: 21 ESFEGRVVIGTVTGIENDLAVIDVGLKSEGRVPLREFAAPGQKADLKVGDEVEVYVDRVE 80 Query: 188 PEARGAQLFVTR 199 A ++R Sbjct: 81 NANGEA--MLSR 90 >UniRef50_A1RYZ3 Rad51-like protein n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RYZ3_THEPD Length = 315 Score = 44.0 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 6/105 (5%) Query: 355 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 I+ K I + L G T+E+L +EL E+ G+D L A+ Sbjct: 4 PIEELGKEEGIGRVTISRLKSAGIETVEDLVLYNPEELEELAGIDFERALRLVRTAR--- 60 Query: 415 ATIAQAQEESLGDNKPADDLLNLEGVDRDL--AFKLAARGVCTLE 457 +A + ++ ++ A L E + + +L G+ T E Sbjct: 61 -RLAGWEVRAVRGDEYASQLSQRESLTTGVKALDELLEGGLVTQE 104 Score = 41.7 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 430 PADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN-I 488 P ++L EG+ R +L + G+ T+EDL ++L ++ G+ E+A L+ AR Sbjct: 4 PIEELGKEEGIGRVTISRLKSAGIETVEDLVLYNPEELEELAGIDFERALRLVRTARRLA 63 Query: 489 CW 490 W Sbjct: 64 GW 65 >UniRef50_Q1MQB8 Ribosomal protein S1 n=2 Tax=Desulfovibrionaceae RepID=Q1MQB8_LAWIP Length = 574 Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 45/101 (44%), Gaps = 5/101 (4%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRE---NFRPGDRVRGVLYSVRPEA 190 EG I+ G + +++ DN+ +D+ +E I + + + GD++ + VR Sbjct: 35 EGTIVKGEIVRIDDDNVLVDVNFKSEGQIPTIEFQNTDGNITAKVGDKIDVFV--VRKNE 92 Query: 191 RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 + + ++ K + + ++E + +I+ + R G Sbjct: 93 QEGTIILSFEKAKRMQLFDQLEDLQEKNGIIKGRIVRRIKG 133 >UniRef50_A2DXE9 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2DXE9_TRIVA Length = 178 Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 15/89 (16%) Query: 130 FREHEGEIITGVVKKVNRDNISLDLGNNAEAVIL-------REDMLPRENFRPGDRVRGV 182 ++ G+I+ G+V + N D+ +D+G++ A + + P F GD V Sbjct: 14 YKATAGDIVIGIVDRKNGDDWLVDIGSSHNAYLPGMAFAGVTKQTAP--KFDKGDLVVAW 71 Query: 183 LYSVRPEARGAQLFVT---RSKPEMLIEL 208 + V ++ ++ R++ E L L Sbjct: 72 VEQVPEAG---EVLLSCLPRTQNEKLGRL 97 >UniRef50_A8LST4 Putative uncharacterized protein n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LST4_DINSH Length = 1471 Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 81/235 (34%), Gaps = 32/235 (13%) Query: 264 TELGGERIDIVLWDDNPAQ--FVINAMAPADVA---SIVVDEDKHTMDIAVEAGNLAQAI 318 E G E I++ +D A + A P+ + I+V E V + Sbjct: 1253 QEAGIENIEVRPYDPKLADRYLLDFARTPSRLDPSAKIIVYERDGKAA-FVAEERITTV- 1310 Query: 319 GRNGQNVRLASQLS----GWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDF--ATV 372 A +L+ + + + + A A + + I+ + V Sbjct: 1311 ------TTPAPKLTPAEEARIVELTSRIEKAKDTSAAEEALANLKLETAKIETEVDALRV 1364 Query: 373 LVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPAD 432 + E +LE L E+EGL ++ L + + Q + D Sbjct: 1365 MREAEAQSLEALKIERDSLKTELEGL------------RSGLDAVGEMQRKMKVDVDSLR 1412 Query: 433 DLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIE-GLTDEKAGALIMAAR 486 + LEGV R++A +L GV T+ DLA L E G ALI A+ Sbjct: 1413 PVTELEGVSREVAARLERAGVRTIGDLATASTAKLRTAEIGQDTAARKALIDTAK 1467 >UniRef50_Q18DN4 Halomucin n=2 Tax=Haloquadratum walsbyi RepID=HMU_HALWD Length = 9159 Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 59/162 (36%), Gaps = 6/162 (3%) Query: 325 VRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEEL 384 +LA Q S W +T + + + + I + A+ L E G ++++L Sbjct: 8819 AKLAIQSSAW----ITTVETRLWQLLSGEDSPSSSRSLAAIAGESASELNEVGVDSVDQL 8874 Query: 385 AYVPMKELLEIEGLDEPTVEALRERAKNALATIAQ-AQEESLGDNKPADDLLNLEGVDRD 443 A ++L +DE V RA +A + + A E+ + + + Sbjct: 8875 ASADPEQLASALEIDESAVAEWVNRAGHASGSTERPAFIETRNGKRIQARYEQIAEI-VQ 8933 Query: 444 LAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAA 485 + V ++ + + G LA + G +++ A Sbjct: 8934 TGVSIPTISVGSVHSITDIGGRQLARVTGWLQGDVSSILSGA 8975 >UniRef50_Q9Y2W6 Tudor and KH domain-containing protein n=24 Tax=Theria RepID=TDRKH_HUMAN Length = 606 Score = 43.7 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 27/170 (15%) Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357 V ED +++ V + IGR G N++ + +G ++V T D + + + Sbjct: 48 VGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQ 107 Query: 358 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATI 417 I + P+ E L + + +V + R + +I Sbjct: 108 VCKAKAAIHQILTE--------------NTPVSEQLSVP---QRSVGRIIGRGGETIRSI 150 Query: 418 AQAQEESLGDNKPAD------DLLNLEGVDRDLAFKLAARGVCTLEDLAE 461 +A + +K ++ L+ + G +++A A LE ++E Sbjct: 151 CKASGAKITCDKESEGTLLLSRLIKISGTQKEVA----AAKHLILEKVSE 196 >UniRef50_B2XT45 30S ribosomal protein S1 n=2 Tax=Heterosigma akashiwo RepID=B2XT45_HETA2 Length = 269 Score = 43.7 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 10/83 (12%) Query: 124 AMVVDQFREH--EGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRP 175 ++ ++ +G+II G V + +D+G A + ++ L ++ Sbjct: 15 ELLFKKYNYQFSKGDIIAGKVISFEKFGTLIDIGAKVLAYLPSSEISSFQAFLTKQLLNR 74 Query: 176 GDRVRGVLYSVRPEARGAQLFVT 198 G+ + VL RP + L ++ Sbjct: 75 GELLEFVLTDYRPNKK--TLIIS 95 >UniRef50_B7IE33 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Thermosipho africanus TCF52B RepID=B7IE33_THEAB Length = 811 Score = 43.7 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 35/85 (41%), Gaps = 10/85 (11%) Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR------ENF 173 ++ ++ EG+II G+VKK+ + + + + ++ ++ + Sbjct: 440 NEQKEKFFNE--RKEGDIIEGIVKKIEKFGAFVRIFEGIDGLLPNSEVSYDTSLKVEDVL 497 Query: 174 RPGDRVRGVLYSVRPEARGAQLFVT 198 G V+ + + E R ++ ++ Sbjct: 498 SEGQSVKLYIKKIDKENR--KILLS 520 >UniRef50_B8FI70 Ribosomal protein S1 n=14 Tax=Proteobacteria RepID=B8FI70_DESAA Length = 616 Score = 43.7 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 5/92 (5%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRE---NFRPGDRVRGVLYSVRPEA 190 EGE++TG + ++++D + +D+G +E +I + + + GD V ++ + E Sbjct: 70 EGEVVTGKIIQIDKDYVLVDIGYKSEGLIPIREFIEPDGTVAAEIGDEVEVMVERLDSED 129 Query: 191 RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIE 222 G + V++ K + I+V E ++E Sbjct: 130 EG--VMVSKEKASKIKVWEEIKVAYEEEGIVE 159 >UniRef50_C4XQS6 30S ribosomal protein S1 n=3 Tax=Desulfovibrio RepID=C4XQS6_DESMR Length = 576 Score = 43.7 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 10/118 (8%) Query: 120 EAERAMVVDQFREHE-GEIITGVVKKVNRDNISLDLGNNAEAVILREDML--PRE-NFRP 175 +A + + F + E G I GVV ++ ++++ +D+ +E I + + E + Sbjct: 21 DALENYLNEDFGDLEEGSITPGVVVRIGKEHVLVDVNFKSEGQIPVSEFMDALGELEVKV 80 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFR--IEVPEIGEEVIEIKAAARDPG 231 GD++ + V + ++R + + + +LF E+ E ++VI K R G Sbjct: 81 GDQIDVYV--VSKNESEGTIIMSRERAKRM-QLFDKLEEIQE-KDDVISGKIVRRIKG 134 Score = 42.1 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 61/152 (40%), Gaps = 18/152 (11%) Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARYE--DESLNLGDYVEDQIESVTFDRITTQTAKQV 113 + ++VD + +I + + + +GD ++ + S T + Sbjct: 45 VRIGKEHVLVDVNFKSEGQIPVSEFMDALGELEVKVGDQIDVYVVSKNESEGT------I 98 Query: 114 IVQKVREAERAMVVDQFRE--HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM---- 167 I+ + R A+R + D+ E + ++I+G + + + ++DLG EA + + Sbjct: 99 IMSRER-AKRMQLFDKLEEIQEKDDVISGKIVRRIKGGYTVDLG-GVEAFLPGSHVDLRP 156 Query: 168 LPRENFRPGDRVRGVLYSVRPEARGAQLFVTR 199 +P + G + + R + + V+R Sbjct: 157 VPDMDALVGQEFEFRVLKINR--RRSNVIVSR 186 >UniRef50_C8WX93 RNA binding S1 domain protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WX93_ALIAD Length = 385 Score = 43.3 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 9/114 (7%) Query: 90 GDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDN 149 G + ++ V + +++ ++++ EA + ++ + G++I G V+++ Sbjct: 147 GQKLRAKVIEVDPQKNKLILSRRAVLEEESEARARKLFEELKP--GDVIEGTVQRLTDFG 204 Query: 150 ISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFV 197 +D+G A+ ++ ++ P E R GDRV+ + V PEA L + Sbjct: 205 AFVDVG-GADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSI 257 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A0LE21 NusA antitermination factor n=14 Tax=Bacteria Re... 507 e-142 UniRef50_Q1LSK7 Transcription termination factor NusA n=7 Tax=Ga... 499 e-140 UniRef50_D0KHM4 NusA antitermination factor n=18 Tax=Proteobacte... 497 e-139 UniRef50_Q0C5Z7 Transcription termination factor NusA n=110 Tax=... 488 e-136 UniRef50_Q3J9B5 NusA antitermination factor n=3 Tax=Gammaproteob... 485 e-135 UniRef50_Q83BS0 Transcription elongation protein nusA n=504 Tax=... 476 e-133 UniRef50_A4G7S8 Transcription elongation protein nusA (N utiliza... 476 e-132 UniRef50_B8FCY4 NusA antitermination factor n=3 Tax=Desulfobacte... 460 e-128 UniRef50_Q28WF5 NusA antitermination factor n=74 Tax=Bacteria Re... 457 e-127 UniRef50_Q1V1E6 Transcription termination factor n=3 Tax=Candida... 456 e-126 UniRef50_Q1DAM8 Transcription termination factor NusA n=11 Tax=B... 455 e-126 UniRef50_C4GHM6 Putative uncharacterized protein n=1 Tax=Kingell... 451 e-125 UniRef50_Q9ZCZ7 Transcription elongation protein nusA n=20 Tax=A... 449 e-124 UniRef50_B6AR17 Transcription termination factor (NusA) n=4 Tax=... 443 e-123 UniRef50_A8ZZ66 NusA antitermination factor n=3 Tax=Deltaproteob... 441 e-122 UniRef50_A5EWZ0 Transcription termination factor n=1 Tax=Dichelo... 438 e-121 UniRef50_Q9KA74 Transcription elongation protein nusA n=309 Tax=... 435 e-120 UniRef50_C6C0D5 NusA antitermination factor n=7 Tax=Deltaproteob... 434 e-120 UniRef50_Q01W32 NusA antitermination factor n=3 Tax=Bacteria Rep... 434 e-120 UniRef50_Q6MMS7 N utilization substance protein A n=1 Tax=Bdello... 434 e-120 UniRef50_C9KKC1 Transcription termination factor NusA n=1 Tax=Mi... 433 e-120 UniRef50_Q1MQY9 Transcription elongation factor n=2 Tax=Desulfov... 431 e-119 UniRef50_D1U699 NusA antitermination factor n=1 Tax=Desulfovibri... 429 e-118 UniRef50_B9XFC0 NusA antitermination factor n=1 Tax=bacterium El... 428 e-118 UniRef50_B8J1Y6 NusA antitermination factor n=5 Tax=Desulfovibri... 425 e-117 UniRef50_D1AUG3 Transcription elongation factor n=5 Tax=Anaplasm... 424 e-117 UniRef50_A6TRL0 NusA antitermination factor n=5 Tax=Firmicutes R... 419 e-115 UniRef50_D2L1U7 NusA antitermination factor n=1 Tax=Desulfovibri... 419 e-115 UniRef50_B3WER8 Transcription elongation protein NusA (Transcrip... 418 e-115 UniRef50_A0Q8F4 Transcription elongation factor n=17 Tax=Francis... 416 e-114 UniRef50_Q5GS98 Transcription elongation factor, NusA n=13 Tax=R... 414 e-114 UniRef50_A9AV46 NusA antitermination factor n=11 Tax=Bacteria Re... 411 e-113 UniRef50_C4XIM5 Transcription elongation protein NusA n=4 Tax=De... 410 e-113 UniRef50_Q044C0 Transcription elongation factor n=45 Tax=Bacilli... 409 e-112 UniRef50_C1F696 Transcription termination factor NusA n=1 Tax=Ac... 408 e-112 UniRef50_B5JHK3 Transcription termination factor NusA n=1 Tax=Ve... 407 e-112 UniRef50_B3DXW5 Transcription elongation factor n=2 Tax=Verrucom... 407 e-112 UniRef50_D1N2Z3 NusA antitermination factor n=1 Tax=Victivallis ... 406 e-112 UniRef50_B2KC94 NusA antitermination factor n=1 Tax=Elusimicrobi... 403 e-110 UniRef50_UPI0001C3544A transcription elongation factor NusA n=1 ... 398 e-109 UniRef50_D1B5D7 NusA antitermination factor n=3 Tax=Synergistace... 398 e-109 UniRef50_B1ZX42 NusA antitermination factor n=1 Tax=Opitutus ter... 396 e-108 UniRef50_A6NTX6 Putative uncharacterized protein n=2 Tax=Bacteri... 395 e-108 UniRef50_B5YJX4 Transcription termination factor NusA n=1 Tax=Th... 393 e-108 UniRef50_B5YEH2 Transcription termination factor NusA n=2 Tax=Di... 393 e-107 UniRef50_C3RL60 Transcription termination-antitermination factor... 392 e-107 UniRef50_B2UQQ4 NusA antitermination factor n=2 Tax=Verrucomicro... 392 e-107 UniRef50_Q2GDP1 N utilization substance protein A n=2 Tax=Neoric... 392 e-107 UniRef50_P48514 Transcription elongation protein nusA n=8 Tax=De... 392 e-107 UniRef50_C1SH20 Transcription termination factor NusA n=1 Tax=De... 391 e-107 UniRef50_C1A8N6 Transcription elongation protein NusA n=1 Tax=Ge... 391 e-107 UniRef50_UPI0001C31DB6 NusA antitermination factor n=1 Tax=Conex... 389 e-106 UniRef50_D1PLN7 Transcription termination factor NusA n=2 Tax=Cl... 389 e-106 UniRef50_B2S4C9 N utilization substance protein A n=4 Tax=Trepon... 386 e-106 UniRef50_D1KAN2 Transcription elongation factor n=1 Tax=uncultur... 385 e-105 UniRef50_C1TMK5 Transcription termination factor NusA n=1 Tax=De... 384 e-105 UniRef50_A8F3W1 NusA antitermination factor n=12 Tax=Thermotogac... 382 e-104 UniRef50_B2GBN4 Transcription termination-antitermination factor... 382 e-104 UniRef50_B1GZN5 Transcription antitermination factor NusA n=1 Ta... 379 e-103 UniRef50_C2ES49 Transcription termination factor NusA n=1 Tax=La... 378 e-103 UniRef50_A8SMZ8 Putative uncharacterized protein n=1 Tax=Parvimo... 377 e-103 UniRef50_Q3Z7U1 N utilization substance protein A n=5 Tax=Dehalo... 374 e-102 UniRef50_C7RGN8 NusA antitermination factor n=7 Tax=Clostridiale... 374 e-102 UniRef50_D2R7W7 NusA antitermination factor n=1 Tax=Pirellula st... 373 e-101 UniRef50_B0B9K5 N utilization substance protein A n=16 Tax=Chlam... 371 e-101 UniRef50_D2QL25 NusA antitermination factor n=14 Tax=Bacteria Re... 368 e-100 UniRef50_A3CQ21 N utilization substance protein A, putative n=42... 366 1e-99 UniRef50_D1BJ68 Transcription termination factor NusA n=5 Tax=Ac... 365 3e-99 UniRef50_Q1AW56 NusA antitermination factor n=1 Tax=Rubrobacter ... 361 5e-98 UniRef50_B0SH17 Transcription elongation factor n=6 Tax=Leptospi... 360 6e-98 UniRef50_Q2S1N6 N utilization substance protein A n=5 Tax=cellul... 360 7e-98 UniRef50_A6CF45 Transcription elongation factor NusA n=3 Tax=Pla... 359 9e-98 UniRef50_Q7URQ7 N utilization substance protein A n=1 Tax=Rhodop... 356 1e-96 UniRef50_UPI00016C59C1 transcription elongation factor NusA n=1 ... 355 3e-96 UniRef50_A4E6U9 Putative uncharacterized protein n=1 Tax=Collins... 355 3e-96 UniRef50_C1QB15 Transcription termination factor NusA n=2 Tax=Br... 354 3e-96 UniRef50_C6JIH8 Transcription elongation factor NusA n=2 Tax=Fus... 354 6e-96 UniRef50_Q0H8S9 NusA n=2 Tax=Spiroplasma RepID=Q0H8S9_SPIKU 353 8e-96 UniRef50_C7H125 Transcription termination factor NusA n=1 Tax=Eu... 353 1e-95 UniRef50_C0QTL7 Transcription termination factor NusA n=2 Tax=Hy... 352 1e-95 UniRef50_D2MPS9 Transcription termination factor NusA n=3 Tax=Er... 352 2e-95 UniRef50_Q04GN3 Transcription elongation factor n=18 Tax=Lactoba... 352 2e-95 UniRef50_C7LXY2 NusA antitermination factor n=1 Tax=Acidimicrobi... 352 2e-95 UniRef50_C7NH16 Transcription termination factor NusA n=55 Tax=A... 350 7e-95 UniRef50_B8DW42 N utilization substance-like protein n=11 Tax=Bi... 348 4e-94 UniRef50_C6X2U0 Transcription termination protein NusA n=2 Tax=F... 346 1e-93 UniRef50_C8W720 NusA antitermination factor n=9 Tax=Coriobacteri... 346 2e-93 UniRef50_B0MQX1 Putative uncharacterized protein n=1 Tax=Eubacte... 345 2e-93 UniRef50_B2J957 NusA antitermination factor n=8 Tax=Cyanobacteri... 343 7e-93 UniRef50_B1CB56 Putative uncharacterized protein n=1 Tax=Anaerof... 343 1e-92 UniRef50_B2V8D7 NusA antitermination factor n=2 Tax=Sulfurihydro... 340 7e-92 UniRef50_D0J8H0 Transcription elongation factor NusA n=36 Tax=Ba... 340 9e-92 UniRef50_UPI0001C373AB NusA antitermination factor n=1 Tax=Rumin... 340 9e-92 UniRef50_A6DKQ2 Transcription elongation factor NusA n=1 Tax=Len... 338 3e-91 UniRef50_C4Z5N4 N utilization substance protein A n=1 Tax=Eubact... 335 3e-90 UniRef50_Q1Q1G4 Strongly similar to transcription elongation pro... 334 4e-90 UniRef50_C9RKT3 NusA antitermination factor n=1 Tax=Fibrobacter ... 334 5e-90 UniRef50_D1AL29 NusA antitermination factor n=10 Tax=Fusobacteri... 333 1e-89 UniRef50_B0VFB8 Transcription elongation factor NusA n=1 Tax=Can... 331 3e-89 UniRef50_D2NNU7 Transcription elongation factor n=12 Tax=Actinob... 331 5e-89 UniRef50_P0A5M3 Transcription elongation protein nusA n=50 Tax=A... 329 1e-88 UniRef50_B3SFF1 Putative uncharacterized protein (Fragment) n=1 ... 328 4e-88 UniRef50_B7K5I0 NusA antitermination factor n=9 Tax=Cyanobacteri... 323 1e-86 UniRef50_Q0I7K4 Transcription termination factor NusA n=43 Tax=c... 321 3e-86 UniRef50_Q2SSE3 Transcription elongation protein nusA, putative ... 320 8e-86 UniRef50_O51740 Transcription elongation protein nusA n=21 Tax=B... 316 9e-85 UniRef50_C7NAM6 NusA antitermination factor n=6 Tax=Fusobacteria... 316 2e-84 UniRef50_D1AY66 NusA antitermination factor n=1 Tax=Streptobacil... 310 8e-83 UniRef50_A6DBC4 Transcription elongation factor NusA n=1 Tax=Cam... 307 4e-82 UniRef50_A9NF09 Transcription termination factor n=16 Tax=Achole... 306 1e-81 UniRef50_B9L7T5 Transcription termination factor NusA n=1 Tax=Na... 305 3e-81 UniRef50_A7I0Q5 Transcription termination factor NusA n=2 Tax=Ca... 300 6e-80 UniRef50_Q8EWU2 N-utilization substance protein A n=1 Tax=Mycopl... 299 1e-79 UniRef50_B1VGB9 N utilization substance protein A n=2 Tax=Coryne... 298 3e-79 UniRef50_A6QCD2 Transcription termination factor NusA n=17 Tax=E... 298 3e-79 UniRef50_A8ERE7 Transcription termination factor NusA n=15 Tax=E... 295 3e-78 UniRef50_Q7VGP8 Transcription termination factor NusA n=1 Tax=He... 293 1e-77 UniRef50_C3XEZ2 Transcription termination factor NusA n=2 Tax=He... 293 1e-77 UniRef50_D1J8W2 Transcription elongation protein NusA n=1 Tax=My... 293 1e-77 UniRef50_Q83N21 N utilization substance protein A n=2 Tax=Trophe... 289 2e-76 UniRef50_P75591 Transcription elongation protein nusA n=2 Tax=My... 287 9e-76 UniRef50_Q3B1Z7 NusA antitermination factor n=12 Tax=Chlorobiace... 286 1e-75 UniRef50_Q6KIE0 N-utilization substance protein a n=1 Tax=Mycopl... 279 2e-73 UniRef50_Q9ZJA6 Transcription elongation protein nusA n=16 Tax=H... 278 4e-73 UniRef50_B3PNC2 Transcription elongation factor NusA n=1 Tax=Myc... 275 3e-72 UniRef50_B5ZBC7 Transcription termination factor NusA n=15 Tax=U... 273 1e-71 UniRef50_Q7NBZ6 NusA-homolog n=1 Tax=Mycoplasma gallisepticum Re... 272 2e-71 UniRef50_Q4A7E0 N-utilization substance protein A n=5 Tax=Mycopl... 267 7e-70 UniRef50_C4XE33 Putative uncharacterized protein n=1 Tax=Mycopla... 264 6e-69 UniRef50_B5Y929 Transcription termination factor NusA n=1 Tax=Co... 262 3e-68 UniRef50_Q4A579 N-utilization substance protein A n=2 Tax=Mycopl... 260 6e-68 UniRef50_B4U6H2 NusA antitermination factor n=3 Tax=Aquificaceae... 260 1e-67 UniRef50_D2SDW8 NusA domain protein n=1 Tax=Geodermatophilus obs... 260 1e-67 UniRef50_C7LKE4 Transcription elongation factor NusA n=1 Tax=Can... 260 1e-67 UniRef50_C5J6Y1 N-utilization substance protein A n=1 Tax=Mycopl... 248 3e-64 UniRef50_A5IZE0 Transcription elongation protein NusA n=1 Tax=My... 245 3e-63 UniRef50_Q0EZ71 Transcription elongation factor NusA n=1 Tax=Mar... 235 4e-60 UniRef50_Q98R07 N-UTILIZATION SUBSTANCE PROTEIN A n=1 Tax=Mycopl... 230 1e-58 UniRef50_C1E6R5 Predicted protein n=2 Tax=Micromonas RepID=C1E6R... 222 2e-56 UniRef50_A4RY26 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 203 1e-50 UniRef50_Q96T48 Transcription termination-antitermination factor... 192 3e-47 UniRef50_A5ZWL2 Putative uncharacterized protein n=1 Tax=Ruminoc... 160 1e-37 UniRef50_Q6MZ96 Possible nucleic acid binding protein n=3 Tax=My... 146 2e-33 UniRef50_B9PBC3 Predicted protein (Fragment) n=1 Tax=Populus tri... 137 1e-30 UniRef50_UPI00019018E3 transcription elongation factor NusA n=2 ... 115 3e-24 UniRef50_UPI0000D54FAD transcription elongation factor NusA n=1 ... 115 4e-24 UniRef50_D0PA07 Transcription elongation factor NusA n=4 Tax=Rhi... 101 9e-20 UniRef50_Q2FPJ7 NusA family KH domain protein n=1 Tax=Methanospi... 94 1e-17 UniRef50_B1L737 NusA family KH domain protein n=1 Tax=Candidatus... 92 5e-17 UniRef50_D1YXX1 NusA protein homolog n=9 Tax=Euryarchaeota RepID... 92 6e-17 UniRef50_A8MB79 NusA family KH domain protein n=6 Tax=Thermoprot... 88 5e-16 UniRef50_A2SQE3 NusA family KH domain protein n=4 Tax=Methanomic... 88 6e-16 UniRef50_O27128 Transcription termination factor NusA n=6 Tax=Eu... 88 8e-16 UniRef50_P15739 NusA protein homolog n=9 Tax=Halobacteriaceae Re... 88 9e-16 UniRef50_D2RUW3 NusA family KH domain protein n=2 Tax=Halobacter... 88 1e-15 UniRef50_C6SA73 N utilization substance protein A n=1 Tax=Neisse... 87 2e-15 UniRef50_P11523 NusA protein homolog n=15 Tax=Thermoprotei RepID... 85 5e-15 UniRef50_Q2LU20 Hypothetical cytosolic protein n=1 Tax=Syntrophu... 85 8e-15 UniRef50_A9A465 NusA family KH domain protein n=6 Tax=Thaumarcha... 83 3e-14 UniRef50_A1RWW2 NusA family KH domain protein n=1 Tax=Thermofilu... 83 3e-14 UniRef50_D1CBU2 RNA binding S1 domain protein n=1 Tax=Thermobacu... 80 2e-13 UniRef50_A2ST95 NusA family KH domain protein n=5 Tax=Methanomic... 80 2e-13 UniRef50_D1JEK5 Putative NusA protein homolog n=1 Tax=uncultured... 80 2e-13 UniRef50_UPI0001BCE222 transcription elongation factor NusA n=1 ... 79 4e-13 UniRef50_B5YEY5 Ribosomal protein S1, putative n=2 Tax=Dictyoglo... 79 4e-13 UniRef50_C7NTX6 NusA family KH domain protein n=1 Tax=Halorhabdu... 78 7e-13 UniRef50_P29157 NusA protein homolog n=12 Tax=Euryarchaeota RepI... 76 4e-12 UniRef50_B5IGJ7 NusA family KH domain protein n=1 Tax=Acidulipro... 75 8e-12 UniRef50_P14026 NusA protein homolog n=8 Tax=Methanococcales Rep... 74 2e-11 UniRef50_B1LBI3 RNA binding S1 domain protein n=5 Tax=Thermotoga... 73 2e-11 UniRef50_D1XBA7 RNA binding S1 domain protein n=2 Tax=Streptomyc... 73 4e-11 UniRef50_Q58447 NusA protein homolog n=4 Tax=Methanocaldococcus ... 72 5e-11 UniRef50_Q9YAU4 NusA protein homolog n=1 Tax=Aeropyrum pernix Re... 72 5e-11 UniRef50_A1HTW2 Hydroxymethylbutenyl pyrophosphate reductase n=4... 71 1e-10 UniRef50_Q2RIU7 Hydroxymethylbutenyl pyrophosphate reductase n=1... 70 2e-10 UniRef50_Q2S1M7 Ribosomal protein S1, putative n=2 Tax=Rhodother... 70 2e-10 UniRef50_D1CF08 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 70 3e-10 UniRef50_UPI00017435B0 LytB protein n=1 Tax=candidate division T... 69 4e-10 UniRef50_C7NE91 RNA binding S1 domain protein n=3 Tax=Leptotrich... 68 9e-10 UniRef50_B9L032 30S ribosomal protein S1 n=1 Tax=Thermomicrobium... 66 3e-09 UniRef50_B5Y9T3 Ribosomal protein S1 n=1 Tax=Coprothermobacter p... 66 3e-09 UniRef50_B0VFT2 Putative Ribosomal protein S1 n=1 Tax=Candidatus... 66 4e-09 UniRef50_C7NV64 Ribosomal protein L32e n=2 Tax=Halobacteriaceae ... 65 6e-09 UniRef50_Q1IY12 RNA binding S1 n=9 Tax=Deinococci RepID=Q1IY12_D... 64 1e-08 UniRef50_C0GDV0 Hydroxymethylbutenyl pyrophosphate reductase n=1... 63 2e-08 UniRef50_A8F7S1 RNA binding S1 domain protein n=1 Tax=Thermotoga... 63 2e-08 UniRef50_P46836 30S ribosomal protein S1 n=166 Tax=Actinobacteri... 63 2e-08 UniRef50_B1I3Y7 Hydroxymethylbutenyl pyrophosphate reductase n=3... 63 3e-08 UniRef50_A4J3N5 Hydroxymethylbutenyl pyrophosphate reductase n=3... 63 3e-08 UniRef50_Q5SJ64 DNA polymerase beta family (X family) n=4 Tax=Th... 61 1e-07 UniRef50_C5A6V0 RecJ-like phosphoesterase, containing RNA bindin... 61 1e-07 UniRef50_A4QP01 Pdcd11 protein n=4 Tax=Clupeocephala RepID=A4QP0... 61 1e-07 UniRef50_Q67NT8 30S ribosomal protein S1 n=1 Tax=Symbiobacterium... 59 4e-07 UniRef50_UPI0001C3232B RNA binding S1 domain protein n=1 Tax=Con... 59 4e-07 UniRef50_D1N749 Ribosomal protein S1 n=1 Tax=Victivallis vadensi... 59 4e-07 UniRef50_B3TCT6 Putative S1 RNA binding domain protein n=2 Tax=r... 56 5e-06 UniRef50_C6JH83 Putative uncharacterized protein n=2 Tax=Clostri... 55 5e-06 UniRef50_B4D0J0 Amino acid adenylation domain protein n=1 Tax=Ch... 51 1e-04 UniRef50_Q5JET4 Pko radA intein n=2 Tax=Euryarchaeota RepID=RADA... 51 1e-04 Sequences not found previously or not previously below threshold: UniRef50_A9B766 RNA binding S1 domain protein n=6 Tax=Chloroflex... 64 1e-08 UniRef50_D1C7V0 RNA binding S1 domain protein n=2 Tax=Chloroflex... 62 5e-08 UniRef50_A9AV75 RNA binding S1 domain protein n=5 Tax=Chloroflex... 61 1e-07 UniRef50_Q30ZT8 SSU ribosomal protein S1P n=1 Tax=Desulfovibrio ... 60 2e-07 UniRef50_D1B5G8 RNA binding S1 domain protein n=3 Tax=Synergista... 60 2e-07 UniRef50_B6AR90 Ribosomal protein S1 n=1 Tax=Leptospirillum sp. ... 59 4e-07 UniRef50_B8J034 RNA binding S1 domain protein n=2 Tax=Desulfovib... 58 6e-07 UniRef50_Q027A8 SSU ribosomal protein S1P n=2 Tax=Acidobacteria ... 58 6e-07 UniRef50_C8WX93 RNA binding S1 domain protein n=2 Tax=Alicycloba... 58 7e-07 UniRef50_C1DT56 Ribosomal protein S01 n=3 Tax=Sulfurihydrogenibi... 58 8e-07 UniRef50_D1Y3S9 30S ribosomal protein S1 n=1 Tax=Pyramidobacter ... 58 1e-06 UniRef50_C4XQS6 30S ribosomal protein S1 n=3 Tax=Desulfovibrio R... 57 1e-06 UniRef50_B8FI70 Ribosomal protein S1 n=14 Tax=Proteobacteria Rep... 57 1e-06 UniRef50_B8JIP9 Programmed cell death 11 n=5 Tax=Clupeocephala R... 57 2e-06 UniRef50_A5V0B5 RNA binding S1 domain protein n=3 Tax=Chloroflex... 57 2e-06 UniRef50_Q1MQB8 Ribosomal protein S1 n=2 Tax=Desulfovibrionaceae... 57 2e-06 UniRef50_B5IRN8 DHH family n=4 Tax=Thermococcaceae RepID=B5IRN8_... 56 2e-06 UniRef50_D1ZWZ1 Whole genome shotgun sequence assembly, contig_1... 56 2e-06 UniRef50_A5N6D1 30S ribosomal protein S1 n=2 Tax=Clostridium klu... 56 3e-06 UniRef50_D2L2R4 RNA binding S1 domain protein n=1 Tax=Desulfovib... 56 4e-06 UniRef50_C1FAB9 Ribosomal protein S1 n=2 Tax=Bacteria RepID=C1FA... 56 4e-06 UniRef50_D1VSI0 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 55 5e-06 UniRef50_C3XIZ7 30s ribosomal protein s1 n=6 Tax=Campylobacteral... 55 7e-06 UniRef50_C7RHT6 Hydroxymethylbutenyl pyrophosphate reductase n=8... 54 1e-05 UniRef50_C0GUF0 RNA binding S1 domain protein n=1 Tax=Desulfonat... 54 1e-05 UniRef50_A7HME7 Hydroxymethylbutenyl pyrophosphate reductase n=1... 54 1e-05 UniRef50_B8G2Q3 Hydroxymethylbutenyl pyrophosphate reductase n=2... 54 1e-05 UniRef50_Q1IHI9 SSU ribosomal protein S1P n=6 Tax=Bacteria RepID... 54 2e-05 UniRef50_B0SDD9 30S Ribosomal protein S1 n=6 Tax=Leptospira RepI... 54 2e-05 UniRef50_B7IE33 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 54 2e-05 UniRef50_D0LJ72 Ribosomal protein S1 n=1 Tax=Haliangium ochraceu... 54 2e-05 UniRef50_Q9ZKF6 30S ribosomal protein S1 n=44 Tax=Epsilonproteob... 53 2e-05 UniRef50_A9BGS2 RNA binding S1 domain protein n=1 Tax=Petrotoga ... 53 2e-05 UniRef50_Q8KTS5 Ribosomal protein S1 n=1 Tax=Candidatus Tremblay... 53 2e-05 UniRef50_C1SLB2 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 53 2e-05 UniRef50_Q7X2Y7 Putative 30S ribosomal protein S1 (Fragment) n=1... 53 2e-05 UniRef50_B5YH71 30S ribosomal protein S1 n=1 Tax=Thermodesulfovi... 53 2e-05 UniRef50_A6TRF8 RNA binding S1 domain protein n=2 Tax=Alkaliphil... 53 3e-05 UniRef50_Q3YRK4 SSU ribosomal protein S1P n=21 Tax=Rickettsiales... 53 3e-05 UniRef50_B3WE79 30S Ribosomal protein S1 n=52 Tax=Firmicutes Rep... 52 4e-05 UniRef50_Q0TNG2 Ribosomal protein S1 family n=9 Tax=Clostridium ... 52 5e-05 UniRef50_D2R4L6 Ribosomal protein S1 n=7 Tax=Planctomycetales Re... 52 6e-05 UniRef50_A9KLR6 Hydroxymethylbutenyl pyrophosphate reductase n=5... 52 6e-05 UniRef50_A4SGB6 SSU ribosomal protein S1P n=12 Tax=Chlorobiaceae... 52 6e-05 UniRef50_A6DP56 30S ribosomal protein S1 n=1 Tax=Lentisphaera ar... 51 7e-05 UniRef50_C7H149 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 51 8e-05 UniRef50_A8YV34 30S ribosomal protein S1 n=29 Tax=Lactobacillus ... 51 9e-05 UniRef50_B9MRX3 Hydroxymethylbutenyl pyrophosphate reductase n=1... 51 9e-05 UniRef50_A3ZTD7 30S ribosomal protein S1 n=2 Tax=Bacteria RepID=... 51 9e-05 UniRef50_B8CWY2 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 51 1e-04 UniRef50_C6P7Z4 RNA binding S1 domain protein n=1 Tax=Thermoanae... 51 1e-04 >UniRef50_A0LE21 NusA antitermination factor n=14 Tax=Bacteria RepID=A0LE21_MAGSM Length = 506 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 222/503 (44%), Positives = 318/503 (63%), Gaps = 10/503 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M EIL V + V+ EK + R+ + EA+ESA+ TA++KKY +++ + D KSG+F + Sbjct: 1 MTVEILQVADQVAREKGIDRKVVIEAMESAIQTASRKKYGANKNIQARFDPKSGEFQLNQ 60 Query: 61 RWLVVDEVTQPTK------EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 VVD I+LE A + GD++ +Q+ + F RI QTAKQVI Sbjct: 61 LREVVDLDQDEDLDFDEDIHISLEKALTMNPEAVPGDFIAEQLPPMEFGRIAAQTAKQVI 120 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 174 VQKVR+AER + +++ + +GE++ G+VK+V R+NI +DLG + E+ LPRE++R Sbjct: 121 VQKVRDAERERIFEEYADRQGEMVNGLVKRVERNNIHVDLGR-TSGFLPHEEQLPREHYR 179 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 PGDR+R + VR RG Q+ ++R+ P+M++ LF +EVPEI + ++EIKA ARDPG R+ Sbjct: 180 PGDRIRAFIKEVREVTRGPQIILSRTHPQMVVRLFEMEVPEIYDGIVEIKAVARDPGHRS 239 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KIAV++ND +DPVGACVGMRG+RVQ+V TEL GERIDI+ W +PA FV NA+APA+V Sbjct: 240 KIAVRSNDAHVDPVGACVGMRGSRVQSVVTELQGERIDIIEWSHDPAVFVCNALAPAEVV 299 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 354 +VVDE+ + + V+ L+ AIGR GQNVRLAS+L+GW ++++T + + + Sbjct: 300 KVVVDEEDRNIKVVVDETALSLAIGRRGQNVRLASELTGWRIDIITEQEERNLREEMFGE 359 Query: 355 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 TF K LD+ E+ A VLV EGF++ EE+AYVP+ EL IEG DE + LR RA++ L Sbjct: 360 LQQTFMKDLDLGEEVAAVLVNEGFTSAEEVAYVPLNELTSIEGFDEEIAQELRNRARDTL 419 Query: 415 ATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADI--EG 472 A EE + + L L + D LA + V TL+DLA+ D+L ++ Sbjct: 420 LQQALQTEERKAELHIDERLAQLGLLTDDALIALAEKNVNTLDDLADLATDELVEMFDGE 479 Query: 473 LTDEKAGALIMAARN-ICWFGDE 494 LT E A LI+ AR WF DE Sbjct: 480 LTTEDAETLILGARRAAGWFDDE 502 >UniRef50_Q1LSK7 Transcription termination factor NusA n=7 Tax=Gammaproteobacteria RepID=Q1LSK7_BAUCH Length = 495 Score = 499 bits (1286), Expect = e-140, Method: Composition-based stats. Identities = 370/494 (74%), Positives = 438/494 (88%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKEILAVVEAVSNEK++PREKIFEALE+ALATATKKKYEQEI+VR+ IDRKSGDF+T R Sbjct: 1 MNKEILAVVEAVSNEKSVPREKIFEALETALATATKKKYEQEIEVRINIDRKSGDFETLR 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 RWL+V++VTQPT+EITLEAA++++ + +G Y+ED IESVTFDRITTQTAKQVIVQKVR Sbjct: 61 RWLIVEKVTQPTREITLEAAKFDNPNAQVGGYIEDIIESVTFDRITTQTAKQVIVQKVRA 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AERAM+++QFR+++G+I+ G+VKKV+RDN+S+D+GNNAEA+I REDMLPRENFR GDR+R Sbjct: 121 AERAMIIEQFRKYKGQILIGLVKKVHRDNMSIDIGNNAEAIINREDMLPRENFRIGDRIR 180 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 GVLYS+RPE RG QLFV+R+ PEML+ELFRIEVPEIGEE+IEIKA ARDPGSRAKIAVKT Sbjct: 181 GVLYSIRPEVRGTQLFVSRTCPEMLVELFRIEVPEIGEELIEIKAVARDPGSRAKIAVKT 240 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 NDKRIDPVGACVGMRGARVQAVS+ELGGERIDIVLWDDNP QFVINAMAPADVASI+VDE Sbjct: 241 NDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPVQFVINAMAPADVASIIVDE 300 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 D MDIAVE NLAQAIGRNGQNVRLASQLSGWELNV+T+ ++Q KH+AE AAI+ FT Sbjct: 301 DTQIMDIAVEESNLAQAIGRNGQNVRLASQLSGWELNVITLSEMQEKHRAETSAAIEIFT 360 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420 K L+I+E+ AT+L+E G S+LEELAYVP+KELL I+ LDE VE LR++AK A+ + Sbjct: 361 KTLNINEELATILIEGGISSLEELAYVPIKELLVIDKLDENIVEELRKKAKQAITQLTIT 420 Query: 421 QEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGA 480 +E+ KP DLL L ++R +AFKLAARG+CTLE+LAEQGIDDL +IEGL+ E+AG Sbjct: 421 MQENNLAKKPDQDLLELSKLERHIAFKLAARGICTLENLAEQGIDDLLNIEGLSSEQAGE 480 Query: 481 LIMAARNICWFGDE 494 LIMAAR ICWFGD+ Sbjct: 481 LIMAARKICWFGDQ 494 >UniRef50_D0KHM4 NusA antitermination factor n=18 Tax=Proteobacteria RepID=D0KHM4_PECWW Length = 509 Score = 497 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 430/507 (84%), Positives = 464/507 (91%), Gaps = 13/507 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKEILAVVEAVSNEK+LPREKIFEALE+ALATATKKKYEQEIDVRV IDRK+GDFDTFR Sbjct: 1 MNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIDVRVSIDRKTGDFDTFR 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 RWLVV+EVT PT+EITL+AA++ED SL++G YVEDQIESVTFDRITTQTAKQVIVQKVRE Sbjct: 61 RWLVVNEVTLPTREITLDAAQFEDPSLDVGGYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDL------GNNAEAVILREDMLPRENFR 174 AERAMVVDQFRE EGEIITGVVKKVNRDNISL++ AEAVI REDMLPRENFR Sbjct: 121 AERAMVVDQFREQEGEIITGVVKKVNRDNISLEVRPIDGSNTGAEAVIGREDMLPRENFR 180 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 PGDR+RGVLYSVRPEARGAQLFV+RS+PEML+ELFRIEVPEIGEE+IEIKAAARDPGSRA Sbjct: 181 PGDRIRGVLYSVRPEARGAQLFVSRSRPEMLVELFRIEVPEIGEEIIEIKAAARDPGSRA 240 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KIAVKTNDKRIDPVGACVGMRGARVQAVS+ELGGERIDI+LWDDNPAQFVINAMAPADV Sbjct: 241 KIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIILWDDNPAQFVINAMAPADVV 300 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSG-------WELNVMTVDDLQAK 347 SIVVDED TMDIAVE+ NLAQAIGRNGQNVRLASQL WELNVMTV+DLQAK Sbjct: 301 SIVVDEDTCTMDIAVESSNLAQAIGRNGQNVRLASQLLKQHRSDDRWELNVMTVEDLQAK 360 Query: 348 HQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALR 407 HQAEAHAAID FTK+LDIDE+FATVLVEEGFS+LEELAYVP+KELL IEGLDE TVEALR Sbjct: 361 HQAEAHAAIDVFTKHLDIDEEFATVLVEEGFSSLEELAYVPIKELLAIEGLDEETVEALR 420 Query: 408 ERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDL 467 ERAK AL T+A A EESLGD +PA+DLL+L G+ R+LAFKLAA GVCTLEDLAEQG+DDL Sbjct: 421 ERAKAALTTLALAHEESLGDGQPAEDLLSLPGLSRELAFKLAAIGVCTLEDLAEQGVDDL 480 Query: 468 ADIEGLTDEKAGALIMAARNICWFGDE 494 DIE L DE+AG LIMAARNICWFGD+ Sbjct: 481 TDIEELNDEQAGELIMAARNICWFGDD 507 >UniRef50_Q0C5Z7 Transcription termination factor NusA n=110 Tax=cellular organisms RepID=Q0C5Z7_HYPNA Length = 592 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 213/513 (41%), Positives = 312/513 (60%), Gaps = 22/513 (4%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 EIL + +AV+ EK++ + + EA++ A+ A K KY QE D+R +ID +G+ +R Sbjct: 12 EILQIAKAVAEEKSIDQRIVIEAMQEAIEKAAKAKYGQEHDIRAKIDPATGEQTLWRIQT 71 Query: 64 VVDEV--TQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VVD+ K++ L A+ D +L G +++++ F R+ QTAKQVI QKVR+A Sbjct: 72 VVDDETFEDEAKQLRLSEAKRIDATLVAGSELKEELPPFDFGRVAAQTAKQVITQKVRDA 131 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER +++++ GEI++G+VK+V ++ +DLG AE +I R D +PRENF+P DRVR Sbjct: 132 ERERQYNEYKDRVGEIVSGIVKRVEYGHVIVDLGR-AEGIIRRNDGIPRENFQPNDRVRA 190 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 LY V E +G Q+F++R+ P+ + +LF EVPE+ E VI+IKA ARDPGSRAKI V +N Sbjct: 191 YLYKVSREVKGPQIFLSRAAPDFMRKLFAQEVPEVYEGVIQIKACARDPGSRAKIGVISN 250 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D IDPVGACVGMRGARVQAV EL GE+IDI+ W + A F++N + PA+V+ +V+DED Sbjct: 251 DSSIDPVGACVGMRGARVQAVVGELSGEKIDIIPWSFDAATFIVNGLQPAEVSKVVLDED 310 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 + +++ V AIGR GQNVRLASQL+GW+++++T ++Q E D F K Sbjct: 311 ERRVEVVVADDQFPLAIGRRGQNVRLASQLTGWQIDLITESADSERYQKEFQERTDLFMK 370 Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 LD DE A +L EGF ++EE+A+V ++ + IEG D+ E L+ERA+ L +A Sbjct: 371 ALDADETLAQLLASEGFESVEEIAFVAPEDFITIEGFDKDVAEELQERAREYLDRVATEN 430 Query: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDD--------------- 466 + + AD+++ LEGV A KL +GV T+ED+A DD Sbjct: 431 DAKRRELGVADEVMELEGVTPSFAVKLGEQGVKTVEDVAGLVPDDITGYREPGPDGKPVW 490 Query: 467 ---LADIEGLTDEKAGALIMAAR-NICWFGDEA 495 + + + A +M AR W EA Sbjct: 491 VEGILKKGEMRKDDANLFVMKARVAAGWIEPEA 523 >UniRef50_Q3J9B5 NusA antitermination factor n=3 Tax=Gammaproteobacteria RepID=Q3J9B5_NITOC Length = 506 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 284/497 (57%), Positives = 378/497 (76%), Gaps = 4/497 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKEIL VV+AVSNEK + +E IF+A+E+ALA AT+K+Y+++I V+V IDR +GD+ +FR Sbjct: 1 MNKEILMVVDAVSNEKGVNKEVIFQAIEAALAMATRKRYQEDIAVQVVIDRTTGDYQSFR 60 Query: 61 RWLVVD---EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 W V++ E+ P +++ L A D + + +V++ +ES+ F RI QTAKQVIVQK Sbjct: 61 SWEVIEDEAELDAPERQMHLSEACKRDPNAEVSGFVKEPMESIAFGRIAAQTAKQVIVQK 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 VREAERA VV +R E++ GVVK+++R NI LDLG+NAE ++ +E+M+PRE RPGD Sbjct: 121 VREAERAKVVAAYRGRIKEMVMGVVKRMDRGNIILDLGDNAEGIVPQEEMIPREAVRPGD 180 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 R+RG L VR E RG QL ++R+ PE+LIELF++EVPEI E IE+K AARDPG RAKIA Sbjct: 181 RLRGYLKEVRAEGRGPQLVISRTAPELLIELFKLEVPEINENRIEVKGAARDPGLRAKIA 240 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 VKTN+ RIDPVGACVGMRG+RVQAVS EL GER+DIVLWD++PA+FVINAMAPA+VASIV Sbjct: 241 VKTNETRIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPARFVINAMAPAEVASIV 300 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357 VDE++H+MD+AV GNL+QAIGR GQN+RLASQL+GWELNVMT + + K ++EA + Sbjct: 301 VDEERHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQ 360 Query: 358 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATI 417 F + LD+DE+ A +LV EGFS++EE+AYVP +E+L IE D V+ LR RA++ L T Sbjct: 361 MFMEQLDVDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTR 420 Query: 418 AQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEK 477 A A EE++ + +LL++E +D LA LA++G+ T E+LAEQ +D+L +IEG+ EK Sbjct: 421 AIANEETIETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELMEIEGMNREK 480 Query: 478 AGALIMAARNICWFGDE 494 A LIMAAR WF E Sbjct: 481 AARLIMAARE-SWFVSE 496 Score = 43.7 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%) Query: 330 QLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPM 389 +L +V+ + + E +ID A+ L +G T E LA + Sbjct: 408 ELRNRARDVLLTRAIANEETIETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAV 467 Query: 390 KELLEIEGLDEPTVEALRERAKNALATIAQAQEESLG 426 EL+EIEG++ L A+ + + EE+ Sbjct: 468 DELMEIEGMNREKAARLIMAARESWFVSEKQDEETEE 504 >UniRef50_Q83BS0 Transcription elongation protein nusA n=504 Tax=root RepID=NUSA_COXBU Length = 503 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 291/500 (58%), Positives = 375/500 (75%), Gaps = 8/500 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEI-DVRVQIDRKSGDFDTF 59 MNK+IL +V+++SNE+ + +E IFEA+E+ALA T K+YE++ +RV ID+K+GD+++F Sbjct: 1 MNKDILLIVDSMSNERGVSKEVIFEAIEAALAAVTAKRYEEDDVKIRVAIDQKTGDYESF 60 Query: 60 RRWLVVDE----VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 R W VV++ + P +E+TL+ AR D L +GD +E+ +ESV F RI Q AKQVIV Sbjct: 61 RCWTVVEDTNESLEFPNQEMTLKQAREIDSDLEVGDVIEEPVESVKFGRIAVQQAKQVIV 120 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRP 175 QKVREAERA ++ Q+ + GE++ GVVK+V R++I LD+G NAEA++LRE+M+PRE FR Sbjct: 121 QKVREAERAKIIRQYEKRVGELVIGVVKRVTRESIILDMGENAEALLLREEMIPREAFRI 180 Query: 176 GDRVRGVLYSV-RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 DR+R LYSV + + RG QL V+R++PE L+ELF+IEVPEIGEEVIEIK AARDPGSRA Sbjct: 181 NDRLRAYLYSVCQDKKRGPQLLVSRTRPEFLVELFKIEVPEIGEEVIEIKGAARDPGSRA 240 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KIAVKTND RIDP+GACVGMRG+RVQAVS ELGGERIDIVLWDDNPAQ VINAMAPA+VA Sbjct: 241 KIAVKTNDGRIDPIGACVGMRGSRVQAVSNELGGERIDIVLWDDNPAQLVINAMAPAEVA 300 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 354 SIVVDED HTMDIAV L+QAIGR+GQNVRLAS+L+GW LNVM+ ++ KH+ EA Sbjct: 301 SIVVDEDSHTMDIAVNKDQLSQAIGRSGQNVRLASELTGWTLNVMSEAEMAQKHEKEAGK 360 Query: 355 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 F + LD+DE+ A LV+ GF LEE+AYVP +EL +EG DE L+ RA + L Sbjct: 361 IKTAFMEKLDVDEEVADALVQAGFMNLEEVAYVPKEELQGVEGFDEDISAELQRRAGDVL 420 Query: 415 ATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLT 474 T A++E L + KPA+DLL L G+ +LA +L V T +DLAE+ + DL +I + Sbjct: 421 LTQEIAKQE-LDEKKPAEDLLTLPGMTTELARQLVENEVLTRDDLAEKSVLDLKEIIEID 479 Query: 475 DEKAGALIMAARNICWFGDE 494 DE A LIMAAR WF +E Sbjct: 480 DEAAANLIMAAR-AHWFAEE 498 >UniRef50_A4G7S8 Transcription elongation protein nusA (N utilization substance protein A) (L factor) n=52 Tax=Proteobacteria RepID=A4G7S8_HERAR Length = 519 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 237/485 (48%), Positives = 339/485 (69%), Gaps = 6/485 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M++EIL +V+A++ EK + + +F ALE ALA ATKK+YE ++D+RV IDR +G+F++FR Sbjct: 1 MSREILQLVDALAREKNVDPDIVFGALEHALAQATKKRYEGDVDIRVSIDRDTGEFESFR 60 Query: 61 RWLVVDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 RW VV + + P +EI A+ + + + D++E+ IESV F R Q KQV++Q+ Sbjct: 61 RWHVVPDDAGLQLPDQEILHFEAKEQIGDIEVDDHIEEPIESVEFGRRFAQDTKQVVLQR 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 +R+AER ++ F E ++TG +K++ R + ++ G EA + R+ +P+EN R GD Sbjct: 121 IRDAEREQILADFLERGDSLVTGTIKRMERGDAIVESGR-IEARLPRDQTIPKENLRIGD 179 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 RVR + + ARG Q+ ++R+ PE +++LF +EVPEI + ++EIK+AARD G RAKIA Sbjct: 180 RVRAYILRIDRNARGPQVILSRTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIA 239 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V T+DKRIDP+G CVGMRG+RVQAV+ ELGGER+DIVLW ++PAQFVI A+APA+V+SIV Sbjct: 240 VFTSDKRIDPIGTCVGMRGSRVQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIV 299 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357 VDE+KH MD+ V+ NLA AIGR GQNVRLAS+L+GW++N+MT ++ K Q E A Sbjct: 300 VDEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWQINIMTAEESADKSQLETAATRI 359 Query: 358 TFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATI 417 F + LD+D++ A +LV+EGF++LEE+AYVP+ E+L+IE DE TV LR RA++AL T Sbjct: 360 LFMEKLDVDQEVADILVDEGFASLEEIAYVPIGEMLDIESFDEDTVNELRNRARDALVTE 419 Query: 418 AQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEK 477 A A EE + + L NLEG+DR +A KL GV TL+ A D+ I L ++ Sbjct: 420 AIASEEGME--GMDEALANLEGMDRIVAGKLGLAGVKTLDAFAGLAYDEFGAILALPTDR 477 Query: 478 AGALI 482 A LI Sbjct: 478 ARHLI 482 >UniRef50_B8FCY4 NusA antitermination factor n=3 Tax=Desulfobacterales RepID=B8FCY4_DESAA Length = 488 Score = 460 bits (1183), Expect = e-128, Method: Composition-based stats. Identities = 169/434 (38%), Positives = 272/434 (62%), Gaps = 5/434 (1%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 +I V++ VS +K + + + LE AL A +KK D+ VQ + ++G+ + F+ Sbjct: 4 SDIGRVIDQVSRDKGIDKNVLIATLEEALQAAARKKLGPRADIEVQYNEEAGELEVFQFR 63 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 VV+EVT+P E+++E R D LGD + ++++ TF RI Q+AKQVI+QK+++AE Sbjct: 64 EVVEEVTEPDLEMSMEDGRELDPDCELGDSLGSKMDTATFGRIAAQSAKQVIIQKLKDAE 123 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 R V F + +GEII G++++++R +I ++LG E V+ + +PRE + GDR+R Sbjct: 124 RDAVYSSFMDRKGEIINGIMQRMDRGDIIVNLG-QTEGVLPSREQVPRETYHRGDRIRAF 182 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND 242 + V E RG Q+ ++R+ P L LF++EVPEIGE V+ + A AR+PG RAKIAV ++D Sbjct: 183 ILDVVLEGRGPQIILSRTHPNFLTSLFKMEVPEIGEGVVSVMAGAREPGVRAKIAVASSD 242 Query: 243 KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK 302 ID VGACVGM+G+RVQ V EL GE+IDIV W + A+FV NA+APA ++ +++DE+ Sbjct: 243 SDIDAVGACVGMKGSRVQNVVHELRGEKIDIVPWHADSAKFVCNALAPAQISRVIIDEEN 302 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKY 362 H M++ V L+ AIG+ GQNVRLAS+L+GW L+V + ++ ++ + Sbjct: 303 HAMEVIVPDEFLSVAIGKKGQNVRLASKLTGWHLDVKSET----RYSRTMQDGYNSLMEL 358 Query: 363 LDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQE 422 ++DE+ A L E+GF ++EEL+ +L++I+G+D + L A+ A+A++A ++ Sbjct: 359 AELDENIADALYEKGFYSVEELSAADPDDLVQIKGIDLTLADTLIIAAQEAMASMAMEKQ 418 Query: 423 ESLGDNKPADDLLN 436 S A + Sbjct: 419 ASAPQEAEAAEDAQ 432 Score = 43.3 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 42/110 (38%) Query: 379 STLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLE 438 + + E L + + L + + S + L+ L Sbjct: 300 EENHAMEVIVPDEFLSVAIGKKGQNVRLASKLTGWHLDVKSETRYSRTMQDGYNSLMELA 359 Query: 439 GVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNI 488 +D ++A L +G ++E+L+ DDL I+G+ A LI+AA+ Sbjct: 360 ELDENIADALYEKGFYSVEELSAADPDDLVQIKGIDLTLADTLIIAAQEA 409 >UniRef50_Q28WF5 NusA antitermination factor n=74 Tax=Bacteria RepID=Q28WF5_JANSC Length = 590 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 217/560 (38%), Positives = 307/560 (54%), Gaps = 72/560 (12%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+L EAV+ EK + + EA+E +LA A K +Y E+D+RV IDRK+G R Sbjct: 10 ELLQTAEAVAREKMIDPNLVVEAMEESLARAAKSRYGSELDIRVSIDRKTGRATFTRVRT 69 Query: 64 VVDE--VTQPTKEITLEAA------------------RYEDESLNL-------------- 89 V DE + E+ L A DE + Sbjct: 70 VADEDTLENDKAEMLLADADATVAAERPNVVVFNAKSHVYDEEGEVVETRDVRRFVMRKP 129 Query: 90 -------------------GDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 GD + D++ V RI Q+AKQVI+QKVREAER +F Sbjct: 130 TENDKLLTEGVDQSTGPVIGDMIADEVPPVEMGRIAAQSAKQVILQKVREAERDRQFAEF 189 Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEA 190 ++ GEII GVVK+ N+ +D+G+ EA + R + + RE +R GDR+R + VR E Sbjct: 190 KDRVGEIINGVVKREEYGNVIVDVGSG-EAQLRRNEKIGREAYRNGDRIRCYIKDVRREN 248 Query: 191 RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGA 250 RG Q+F++R+ PE + ELF++EVPEI + +IEIKA ARDPGSRAKIAV + D IDPVGA Sbjct: 249 RGHQIFLSRTAPEFMRELFKMEVPEIYDGIIEIKAVARDPGSRAKIAVISYDNGIDPVGA 308 Query: 251 CVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVE 310 CVGMRG+RVQAV EL GE+IDI+ W+++ F++NA+ PA+V+ +V+DED +++ V Sbjct: 309 CVGMRGSRVQAVVNELQGEKIDIIPWNEDAPTFLVNALQPAEVSKVVLDEDAGKIEVVVP 368 Query: 311 AGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFA 370 L+ AIGR GQNVRLASQL+ +++++T ++ + QAE F LD+DE FA Sbjct: 369 DEQLSLAIGRRGQNVRLASQLTNLDIDILTEEEESKRRQAEFEERTKLFMDTLDLDEFFA 428 Query: 371 TVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKP 430 +LV EGF+ LEE+AYV ELL I+G+DE T E L+ RA++ L + E + Sbjct: 429 QLLVSEGFTALEEVAYVEADELLVIDGVDEGTAEELQARARDYLEAQNKLALEKAKEMGV 488 Query: 431 ADDLLNLEGVDRDLAFKLAARGVCTLEDLA-----------------EQGIDDLADIEGL 473 + L+ EG+ + L GV TLED A D L + + Sbjct: 489 EESLIAFEGLTPQMLVALGEDGVKTLEDFATCADWELAGGWTTEGGERIKDDGLLEPFEV 548 Query: 474 TDEKAGALIMAAR-NICWFG 492 + E+A ++M AR + W Sbjct: 549 SLEEAQNMVMTARLQLGWVT 568 >UniRef50_Q1V1E6 Transcription termination factor n=3 Tax=Candidatus Pelagibacter RepID=Q1V1E6_PELUB Length = 530 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 204/507 (40%), Positives = 312/507 (61%), Gaps = 21/507 (4%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+L + EAV+ EK++ +E I +++E+ +A A K K+ Q+ +++V IDR+SGD FR+ + Sbjct: 23 ELLRIAEAVALEKSIDKELIIDSMETGIAKAAKSKFGQDNEIKVLIDRESGDIGIFRKLI 82 Query: 64 VVDEVTQPTKEITLEAAR---YEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV++ EI L+ A ++ +GD + + S F RI QTAKQVI VRE Sbjct: 83 VVEKPENTNTEINLQDAIILNEVNKDKKIGDEILQPLPSFDFGRIAAQTAKQVISFNVRE 142 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER + F + + I++G+VK++ N+ +DLG EA+I + +M+PREN + GDRV+ Sbjct: 143 AERERQYNDFIDKKDSILSGIVKRLEFGNVIVDLGR-TEAIIQKNEMIPRENIKAGDRVK 201 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 Y V+ EARG Q+F++R+ P+ + +LF EVPEI + +IEIK++ARDPGSRAKI VK Sbjct: 202 AYCYDVKREARGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSARDPGSRAKICVKA 261 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D +DPVGACVGMRG+RVQAV EL GE+IDIV W ++PA V NA++PA+V + VD Sbjct: 262 VDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAIVVSNALSPAEVQRVNVDS 321 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 +D+ + NL++AIGR GQNVRLA++L +E+N+MT + + Q+E + F Sbjct: 322 VAKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQSEFKEKTENFV 381 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420 K L++DE +LV EGFS++ ++ + L++IEG++E T +AL ERAK + Sbjct: 382 KNLELDETLGQLLVAEGFSSISDIKDSSPENLMKIEGIEEDTAKALIERAKEFYQKDQED 441 Query: 421 QEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDL------------- 467 + + D DDL+N +G+ + L + + LED A+ D+L Sbjct: 442 ITQRIKDLGLQDDLINHKGLTPGMLVTLGEQKILKLEDFADLASDELTGGYDVVKGERIK 501 Query: 468 ----ADIEGLTDEKAGALIMAARNICW 490 + L+ +A LIM+AR+I + Sbjct: 502 IQGYLEDFALSKTEADELIMSARSIIY 528 >UniRef50_Q1DAM8 Transcription termination factor NusA n=11 Tax=Bacteria RepID=Q1DAM8_MYXXD Length = 566 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 184/539 (34%), Positives = 299/539 (55%), Gaps = 53/539 (9%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 + + V++ V+ +K + R + LE A+ TA KK + Q+ ++ + D G + F+ Sbjct: 9 SVNLNLVLDQVAKDKGIDRAVLIATLEDAMKTAAKKHFGQDRELEAKYDPDKGVVELFQA 68 Query: 62 WLVVDEVTQPT---KEITLEAARYEDESLNLGDYVEDQIESVT----------------- 101 VV+E+ P +I+L A + + GD + QI Sbjct: 69 ITVVEEIVDPVQAVNQISLVEAHKKGMEVEPGDELVFQIFYRDEDAAEAKAQDDQYGDIL 128 Query: 102 --------FDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLD 153 F RI QTAKQVI+Q+ R+AER V +++R+ + EI+TG+ ++ R NI +D Sbjct: 129 RLKTFRRGFGRIAAQTAKQVILQRTRDAERENVFNEYRDRKNEIVTGIARRFERGNIIVD 188 Query: 154 LGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEV 213 LG AEAV+ + +PRE +RPGDRV+ + V E++G Q+ ++R+ +L +LF +EV Sbjct: 189 LGR-AEAVLPVREQVPRETYRPGDRVQAYVLDVLRESKGPQIVLSRASVNLLTKLFEMEV 247 Query: 214 PEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDI 273 PEI E ++ I+AAAR+PG RAKIAV + D +DPVGACVGM+G+RVQAV EL GE+IDI Sbjct: 248 PEIAEGIVVIEAAAREPGGRAKIAVSSRDSDVDPVGACVGMKGSRVQAVVQELRGEKIDI 307 Query: 274 VLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSG 333 V +D++PA+FV +A+APA+V+ +++DE H M++ V L+ AIGR GQNVRLA+QL+G Sbjct: 308 VPFDEDPARFVCSALAPAEVSRVIIDEANHAMELIVPDDQLSLAIGRRGQNVRLAAQLTG 367 Query: 334 WELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELL 393 W+L++ + ++ A + ++E L GF ++A + L Sbjct: 368 WKLDINSESRVRELR----EFANRSLGSLPGVNEMLVETLYAHGFRQARDIAEANAELLA 423 Query: 394 EIEGLDEPTVEALRERAKNAL----------------ATIAQAQEESLGDNKPADDLLNL 437 ++ G+D + +++E A+ + A IA+A+ ++P + + + Sbjct: 424 QLPGIDPARIPSMQEAARTRMVEDQAELSRMDYEREQARIAEARRHPDELSQP-ERMARV 482 Query: 438 EGVDRDLAFKLAARGVCTLEDLA-EQGIDDLADIEGLTDEKAGALIMAARNICWFGDEA 495 GV +L G ++ED+A E+ + L D+ G+ +KA L AA N + +EA Sbjct: 483 RGVGEKTIEQLILAGYRSVEDIANEKDLAKLGDVPGVGIKKARQLKSAAEN--YLVEEA 539 >UniRef50_C4GHM6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHM6_9NEIS Length = 500 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 224/500 (44%), Positives = 339/500 (67%), Gaps = 9/500 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYE-QEIDVRVQIDRKSGDFDTF 59 M+KEIL + EA+++EK + E +FEALE AL A KKK + +++D+ ++IDR++GD+ T Sbjct: 1 MSKEILLLAEALASEKNVSNEIVFEALEVALGIAAKKKADREQMDLEIRIDRETGDYKTI 60 Query: 60 RRWLVVDEVTQ--PTKEITLEAARYEDESLN--LGDYVEDQIESVTFDRITTQTAKQVIV 115 R+WL+V+++ P E T+E + E + +GDY E+++ + F R QTAKQ+I+ Sbjct: 61 RKWLIVEDLDYTYPELEKTIEQIQEEQPEIQISVGDYYEEELPNEAFGRQAAQTAKQIIL 120 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRP 175 Q++R+AER +++ F E I+TG VK++ R I ++L +A+I RE MLPREN+R Sbjct: 121 QRIRDAEREQILNHFLETHENIVTGTVKRMERHGIVVELAPKLDALIPREQMLPRENYRG 180 Query: 176 GDRVRGVLYSVRPEARG-AQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 GDR+R + + + G Q+ ++R+ P+ + ELF EVPEI + ++EIK ARDPG RA Sbjct: 181 GDRIRALFWKLEEFNGGRKQVLLSRTAPDFVRELFAQEVPEIADGLLEIKEVARDPGQRA 240 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KIAV D+RIDP G C+G+RG+RV AVS E+GGERID+VLW D+ AQFVINA++PA V+ Sbjct: 241 KIAVLARDQRIDPQGTCIGVRGSRVNAVSNEIGGERIDVVLWSDDTAQFVINALSPAQVS 300 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 354 IV+D++ +++D+ V LA AIGR GQNVRLA++L+G +LN+MT+ + + ++ AE+ A Sbjct: 301 RIVIDDELNSVDVIVAEDQLALAIGRGGQNVRLAAELTGLQLNIMTLQEAEERNAAESAA 360 Query: 355 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 A + F + L++ E+ A LV EGF ++EE+AYVP ELLE+EG D E+LR +A+ + Sbjct: 361 ARNLFVEQLEVSEEIADALVNEGFESVEEVAYVPASELLEVEGFDAELAESLRAKAREVV 420 Query: 415 ATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLT 474 A+ E L + +DL L+GVD D+ LA + + +DLAE I +L +I G++ Sbjct: 421 LKAAEEAEAKLNE--IDEDLRTLDGVDEDMLRDLAEANITSRDDLAELSIAELIEITGVS 478 Query: 475 DEKAGALIMAARNICWFGDE 494 E+A I+AAR WF +E Sbjct: 479 HEEAEKAILAAR-AHWFAEE 497 >UniRef50_Q9ZCZ7 Transcription elongation protein nusA n=20 Tax=Alphaproteobacteria RepID=NUSA_RICPR Length = 503 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 184/498 (36%), Positives = 312/498 (62%), Gaps = 7/498 (1%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N EIL ++++V+ EK + +E + +E A+ A +KKY E +++ QI+RK+G+ + R Sbjct: 6 NIEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIKAQINRKTGEINLLRI 65 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 +V++V +I+LE A ++ +GD + + + + R++ Q AKQVI Q+V EA Sbjct: 66 LKIVEDVEDYLTQISLEDALVKNPEAKIGDEIYEYLPPIDHARVSAQAAKQVITQRVIEA 125 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER F++ +G+II G+VK++ +I +DL AEA+I ++ ++ E+F+P DR++ Sbjct: 126 EREKQYHDFKDRKGDIINGIVKRIEYGDIIVDLSR-AEAIIKKDQLIKGEHFKPNDRIKA 184 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + VR E +G Q+F++R +ML++LF++EVPEI E++I+IK+ ARDPGS+AKIAV + Sbjct: 185 YVQDVRQETKGPQIFLSRVDNQMLVKLFKLEVPEILEDIIQIKSVARDPGSKAKIAVFAS 244 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINA---MAPADVASIVV 298 D IDPVG+CVG+RG RV+AV+ EL GE+IDIVLW ++ AQF++N+ +AP+++ I++ Sbjct: 245 DSSIDPVGSCVGIRGNRVKAVTNELNGEKIDIVLWSNDLAQFIVNSLIPLAPSEITKILI 304 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 DED H +++ V + + AIGR GQNVRLAS+L+GW +++MT + + E + + Sbjct: 305 DEDSHKVEVVVSQEHQSIAIGRRGQNVRLASKLTGWNIDIMTEEQESKRRNEEFSTSTEL 364 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418 F + LD++E +L GF+++E++A + L IEG +E ++ RA + + Sbjct: 365 FMEALDVEEVIGQLLSVTGFNSVEQIASSEISTLTRIEGFEEELAVEIKNRAIHYVDLKN 424 Query: 419 QAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDD---LADIEGLTD 475 + + L + +L+++ + +L K A G+ T+EDL E +++ LA +TD Sbjct: 425 EKIIKKLEELGVEQELIDILELPLELILKFAEYGIKTIEDLGEMSVNEFKNLAPNSNITD 484 Query: 476 EKAGALIMAARNICWFGD 493 E LI AR+ D Sbjct: 485 ENIKLLIKTARHHGELKD 502 >UniRef50_B6AR17 Transcription termination factor (NusA) n=4 Tax=Bacteria RepID=B6AR17_9BACT Length = 452 Score = 443 bits (1139), Expect = e-123, Method: Composition-based stats. Identities = 147/451 (32%), Positives = 251/451 (55%), Gaps = 20/451 (4%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N+E+L+V++ + EK + +E + ALESAL A +K+Y + +V+I+ ++G+ + Sbjct: 3 NQELLSVIDQLHREKGISQETLIVALESALLAAARKRYGGGDNFQVEINPRTGEVQVLQI 62 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 +V++V P++EI+L A D +GD + +E F RI Q AKQV+ QKVREA Sbjct: 63 RRIVEQVESPSEEISLAEALESDPEAEVGDEIGSYLEIDDFGRIAAQAAKQVMFQKVREA 122 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E +V +F +G+I+ GV+ R N +DLG EAV+ + +PRE+FR GDR++ Sbjct: 123 EWDVVTKEFGGRQGDIVNGVIIGHERKNYIVDLGK-TEAVLPLREQMPRESFRRGDRIKA 181 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 +L +R +RG QL ++R+ P+ + LF EVPEI E ++E++ R+PG RAKIAV + Sbjct: 182 LLLDMRTTSRGPQLVLSRTHPDFVSRLFEKEVPEIAEGILEVRNVVREPGERAKIAVYSR 241 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D +DPVG+CVG++G RVQAV EL GE++DI+ W +P+ F+ A++PA + + + Sbjct: 242 DPNVDPVGSCVGVKGVRVQAVVRELHGEKVDIIEWSPDPSTFIARALSPAKAVRVSIKDM 301 Query: 302 --KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKH----------- 348 + + V+ L+ AIGR G NVRLA++L+GW++++ + +Q++ Sbjct: 302 GTEKVATVVVQDSQLSLAIGRRGHNVRLAAKLTGWKVDIFSETQMQSEAGLDERAERVAS 361 Query: 349 ------QAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPT 402 ++ + + A +L + GF TL+ +A+ ++ + + T Sbjct: 362 LAETLGSQSGDTSLLRIEDLPGVGGNMAEILRDAGFDTLQAIAHASVEAISALPKFGPKT 421 Query: 403 VEALRERAKNALATIAQAQEESLGDNKPADD 433 L + A++ L K ++ Sbjct: 422 AAKLIQTAQDFLGESTGETPGLTELPKTDEN 452 >UniRef50_A8ZZ66 NusA antitermination factor n=3 Tax=Deltaproteobacteria RepID=A8ZZ66_DESOH Length = 475 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 178/445 (40%), Positives = 270/445 (60%), Gaps = 8/445 (1%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 +++ VVE VS +K + R+ + +ALE A+ +A +K+Y ID+ D +G+ + F+ Sbjct: 4 QDVKRVVEQVSRDKGIDRDTLVKALEEAIKSAARKRYGAAIDIETMYDEDTGEIEIFQFK 63 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 VV+ V P +IT R D LGD + ++++ +F RI Q+AKQVI+QK+REAE Sbjct: 64 EVVETVQDPDLQITFVEGRALDPECELGDSLGVKMDTQSFGRIAAQSAKQVIIQKMREAE 123 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 R+ V F E EGEII G+V ++ R N+ +++G AEA++ + +P E +R GDRVR Sbjct: 124 RSAVYKNFVEKEGEIINGIVSRMERGNVIVNIGE-AEAILNSREQIPGEGYRRGDRVRAN 182 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND 242 + V E G Q+ ++R+ P+ ++ LF+ EVPEI E +I IKA AR+ G R KIAV +ND Sbjct: 183 VMKVLEETAGPQIILSRAHPDFVVNLFKTEVPEISEGIITIKAIAREAGGRTKIAVVSND 242 Query: 243 KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK 302 IDPVGACVG+RG R+Q V EL GE+IDIV W+ +PA+FV NA++PA++A +++DED Sbjct: 243 MDIDPVGACVGVRGNRIQNVVKELKGEKIDIVPWNPDPAKFVCNALSPAEIARVIIDEDN 302 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKY 362 M+I V + + AIGR GQNVRLAS+L+GW L+V + DT + Sbjct: 303 AAMEIIVPDESHSLAIGRRGQNVRLASKLTGWHLDVQSESIYTQA----MERGYDTLLQI 358 Query: 363 LDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQE 422 +D A L E GF + ++++ + +L+E+EG+DE + +AL ++A+ QA Sbjct: 359 PGVDGSLANALCEVGFFSADDISGAAVDDLIELEGIDEASAKALI---RDAVKVAEQAAR 415 Query: 423 ESLGDNKPADDLLNLEGVDRDLAFK 447 E K A + E R A + Sbjct: 416 EQAIREKAAKEQAAKEQAARVQAAE 440 >UniRef50_A5EWZ0 Transcription termination factor n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWZ0_DICNV Length = 495 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 242/497 (48%), Positives = 321/497 (64%), Gaps = 9/497 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYE-QEIDVRVQIDRKSGDFDTF 59 M+KE+LA+VEAV+NEK + R IFEALE+ALA AT+K++ +EI+ RV IDRKSG+++TF Sbjct: 1 MSKELLAIVEAVANEKDVDRNVIFEALEAALAAATRKRHGDKEIETRVSIDRKSGEYETF 60 Query: 60 RRWLVVDE---VTQPTKEITLEAARYEDESLNL--GDYVEDQIESVTFDRITTQTAKQVI 114 R W +VD+ + EI A + +L GD E++IE+ F RI+ Q AKQ+I Sbjct: 61 RVWKIVDDDAILENTDIEIRETVAHIDFPDADLVAGDIYEEKIENEPFGRISAQMAKQII 120 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 174 +QK+REAER + QF E EG ++ G+V++ R N +DLG E ILR DM+PRE R Sbjct: 121 IQKLREAEREKIYQQFIEQEGTLVHGIVRRHERGNAIVDLG-GVEGTILRNDMIPREPLR 179 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 GDR+ G L V E RG QL ++R PE+LI+LF+ EVPEI +IEI AARDPG RA Sbjct: 180 SGDRILGYLEKVNRELRGPQLQISRIAPELLIQLFQKEVPEISSGMIEIMGAARDPGLRA 239 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 KI+V+T D RIDPVGACVG+RG+RVQ V EL GERIDIVLWDD+ +V AMAPA ++ Sbjct: 240 KISVRTFDPRIDPVGACVGIRGSRVQGVVNELAGERIDIVLWDDDAETYVRKAMAPAVIS 299 Query: 295 SIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA 354 V+E T+DIAV L QA+GR GQNVRLAS+L+GW +NV++ + K QA A Sbjct: 300 DTCVNEATKTIDIAVPEEKLPQAVGRGGQNVRLASELTGWTINVLSESEFAEKIQATQSA 359 Query: 355 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 414 + + LD+DE AT L+ G +T E +AY ELL I+ D V+ L ERA N + Sbjct: 360 QEQSLSTILDVDETVATQLIAHGITTPEAVAYTGRDELLTIDAFDAELVDDLLERAANYV 419 Query: 415 ATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLT 474 + +EE + + + +EGVD LA KL A G+ T EDLAE +++L I T Sbjct: 420 -MVEAFKEEDTPEEEMQTSVSVMEGVDSVLAAKLQAAGIHTQEDLAELSVEELITIGNTT 478 Query: 475 DEKAGALIMAARNICWF 491 +A ALI+ AR WF Sbjct: 479 QNEAAALILKARE-PWF 494 >UniRef50_Q9KA74 Transcription elongation protein nusA n=309 Tax=Bacteria RepID=NUSA_BACHD Length = 382 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 138/372 (37%), Positives = 230/372 (61%), Gaps = 4/372 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E + + + EK + +E I EA+E+AL + K+ + Q +VRV ++R++G F Sbjct: 1 MNSEFMDALTTLEKEKGISKEVIIEAIEAALISGYKRNFNQAQNVRVDVNRENGSIRVFA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 R VV+EV EI+L+ A+ + + + D VE ++ F RI QTAKQV+ Q+VRE Sbjct: 61 RKEVVEEVFDARLEISLDEAKGINPNYEVDDVVEIEVTPKDFGRIAAQTAKQVVTQRVRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER ++ F + E +I+TG+V++ + I +DLG EA++ + +P E++R DR++ Sbjct: 121 AERGIIYADFIDREEDIMTGIVQRQDNRFIYVDLGK-VEALLPLSEQMPNESYRHNDRIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V +G Q+ ++R+ P +L LF +EVPEI + +E+K+ AR+ G R+KI+V Sbjct: 180 AYITKVEKTTKGPQIMISRTHPGLLKRLFELEVPEIYDGTVELKSVAREAGDRSKISVHA 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 + +DPVGACVG +G+RVQ + EL GE+IDIV W ++P ++V NA++P+ V + V+E Sbjct: 240 ENPEVDPVGACVGPKGSRVQTIVNELKGEKIDIVRWSEDPVEYVANALSPSKVVKVNVNE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 ++ T + V L+ AIG+ GQN RLA++L+GW++++ + + Q E AA Sbjct: 300 EEKTTQVIVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSESEAQELGLLEDEAASH--- 356 Query: 361 KYLDIDEDFATV 372 + L +D++ A Sbjct: 357 ETLALDQETADQ 368 >UniRef50_C6C0D5 NusA antitermination factor n=7 Tax=Deltaproteobacteria RepID=C6C0D5_DESAD Length = 456 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 146/439 (33%), Positives = 255/439 (58%), Gaps = 6/439 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M E+ ++ +S ++ + R+ + + LE A+ ++ +KY +D+ V + +G+ + ++ Sbjct: 1 MGSELKKAIDQISKDRGIDRDLLIDTLEEAVRSSVARKYGDAMDIEVNFNEDAGEIEVYQ 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V +EV EITLE A+ D ++ + D + +++ RI Q+AKQVI+Q++R+ Sbjct: 61 FKVVAEEVEDEISEITLEEAKEHDPNVQIDDEMGFKLKVEDLGRIAAQSAKQVIIQRMRD 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ ++ D+F+ EI++G++++ +R ++LG EAV+ + + +PRE ++ GDRV+ Sbjct: 121 AEQEIIYDEFKNRMHEIVSGIIQRRDRTGWIINLGR-TEAVLPKGEQIPRERYKRGDRVQ 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V+ E+RG Q+ V+RS P+ + LF+ EVPE+ + ++I ARDPG RAK+AV + Sbjct: 180 AFIIDVQKESRGPQITVSRSHPDYMTALFKREVPEVDDATVKIMGVARDPGLRAKVAVNS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D+ +DPVGACVG+RG+R+Q + EL GERIDIV+W + A + NA++PA + I VDE Sbjct: 240 LDRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWSQDIAMYAQNALSPAVITRIAVDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 ++ T+++ V L AIGR GQNV+LAS+L GW+++V T E +AA Sbjct: 300 EEKTLEVVVPDDQLTVAIGRKGQNVKLASRLLGWKIDVFTES-----RYGEMNAASKGLD 354 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420 + + E + GF T+ ++A + L+ I G+ V ++ A+ Sbjct: 355 QLASVAEIPVDNFLSAGFETVSQVANASEEILMSISGMTPSKVSDMKSAIMLLGIGDAED 414 Query: 421 QEESLGDNKPADDLLNLEG 439 E P + +E Sbjct: 415 AVEETETEAPVEAEAQVEE 433 >UniRef50_Q01W32 NusA antitermination factor n=3 Tax=Bacteria RepID=Q01W32_SOLUE Length = 542 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 142/435 (32%), Positives = 243/435 (55%), Gaps = 7/435 (1%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 I +E +S EK + + + +A++ A+ A +K Y D +D K+G + V Sbjct: 26 IFQSIEILSKEKGIDPQIVLDAVKDAMLIAARKHYRSTEDYVADMDPKTGAIKLYAVKKV 85 Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 V+ V P+ E+TL AR D + +G V + RI+ QTAKQVI QKVREAER Sbjct: 86 VEAVEDPSHEMTLAEARRIDSTAEVGGEVRIPKNTDALGRISAQTAKQVIFQKVREAERE 145 Query: 125 MVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLY 184 V +++ GE++ +K+V + LDLG EA + +++ E + GDRVR ++ Sbjct: 146 TVFNEYSGRTGELVNCTIKRVEGPDYILDLGK-TEAKLPKKEQSRLEGYSVGDRVRCIIK 204 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 244 V ++G + V+R+ PE+++ LF EVPEI + + I+ AR+ G R KIAV++ D+ Sbjct: 205 LVDKSSKGPGVLVSRAAPELVMRLFEQEVPEIYDGTVAIRGCAREAGERTKIAVQSRDRD 264 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKH 303 +D VGACVGM+G RVQ++ EL GE+IDI+ + ++ F +A++PA V+ I V+D + Sbjct: 265 VDSVGACVGMKGMRVQSIIRELRGEKIDIIEYSEDSVVFATHALSPAKVSRITVIDPLEK 324 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHA-----AIDT 358 M++ V+ L+ AIG+ GQNVRLA++L GW++++ + ++ + + +++ A A + Sbjct: 325 HMEVIVDDSQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVESQMAALVAPGAPVS 384 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418 + E+ A L+E G +T+E+L + +EL + G+ +VE ++ + Sbjct: 385 VLIDYGMAEEMAVKLLENGVATIEKLGAMTPEELEVLPGIGPESVEGIQTAVVAYYSQFE 444 Query: 419 QAQEESLGDNKPADD 433 E+ + Sbjct: 445 DPASENAVSETAGSE 459 >UniRef50_Q6MMS7 N utilization substance protein A n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMS7_BDEBA Length = 462 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 152/434 (35%), Positives = 253/434 (58%), Gaps = 8/434 (1%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++ V++ V +K + ++ + +A+ + A +KKY ++ + +G+ + F Sbjct: 7 SDLSKVIDQVGKDKGIDKQVVIDAITQGMLVAARKKYGTYREIEAAYNEDTGEVELFEFK 66 Query: 63 LVV--DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV ++ EI L+ A+ D ++ L D + ++E+ RI QTAKQ+I+QKVR+ Sbjct: 67 EVVPREKYIDEEVEIPLDEAQKLDPNVQLDDSIGIKMEASDLGRIAAQTAKQIIMQKVRD 126 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER ++ ++F E +GEI +G+ ++V + I +DLG EA I + +P E ++PGDR++ Sbjct: 127 AERNIIFNEFEERKGEIASGIARRVEKGAIVVDLGR-TEAYIPPREQIPGEQYKPGDRIQ 185 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 G L VR RG Q+ ++R+ L++LF +EVPEI + V+EI AAAR+PG RAKIAV++ Sbjct: 186 GYLSEVRQTTRGPQIIMSRADERYLMKLFEMEVPEIYDGVVEIMAAAREPGQRAKIAVRS 245 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D +DPVGACVGM+G+RVQ + EL GE+IDIV WD++ +F NA+APA+++ + +D+ Sbjct: 246 KDNSVDPVGACVGMKGSRVQNIVQELRGEKIDIVPWDEDITRFACNALAPAEISRVFLDD 305 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 M+I V L+ AIG+ GQNVRLA++L+ W+L++++ ++ +I Sbjct: 306 ANREMEIVVPDSQLSLAIGKRGQNVRLAAKLTTWKLDIISESSAASR----TAESIFNLM 361 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGL-DEPTVEALRERAKNALATIAQ 419 + E A + + GF + + +A ++EL+ I G D E L + AK +A Sbjct: 362 LIPGMSETMAQNIFQSGFGSFQAVATAAVEELMTIPGYDDPDKAEKLSKEAKGLVAKYES 421 Query: 420 AQEESLGDNKPADD 433 A D Sbjct: 422 EGVPVPTAPSVAKD 435 >UniRef50_C9KKC1 Transcription termination factor NusA n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKC1_9FIRM Length = 378 Score = 433 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 140/349 (40%), Positives = 224/349 (64%), Gaps = 1/349 (0%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 +E L ++ + EK + E +FEA+E+AL +A K+ + +VRV + R++G + + Sbjct: 12 GQEFLTTLKELGKEKGIDEEVLFEAIEAALISAYKRNFGSAQNVRVTLSRETGHYHVYAI 71 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VV++ EI+L AR +GD +E ++ F RI QTAKQV+VQ++REA Sbjct: 72 KTVVEDPEDEITEISLAQARTIKPDYEVGDVIEIEVTPANFGRIAAQTAKQVVVQRIREA 131 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER ++ ++F EG+I+TG+V++V N+ +DLG EAV+ + +P E + GDR++ Sbjct: 132 ERGIIYEEFMSREGDILTGLVERVENHNVYIDLGK-TEAVLTPAEQIPTETYAHGDRIKA 190 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + V+ +G Q+ V+R+ P +L LF +EVPEI E ++EIK+ AR+PG+R+KIAV + Sbjct: 191 YVVEVKKTNKGPQIVVSRTHPGLLKRLFELEVPEIQEGIVEIKSVAREPGNRSKIAVYSK 250 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D+ +DPVG+CVG RG RVQ++ ELG E+IDIV W DNPA+F+ NA++PA V S+ V+E Sbjct: 251 DENVDPVGSCVGHRGLRVQSIVDELGSEKIDIVKWSDNPAKFIANALSPAKVVSVAVNET 310 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA 350 + + V L+ AIG+ GQN RLA++L+GW++++ + + Sbjct: 311 EKVSRVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQAADEELD 359 >UniRef50_Q1MQY9 Transcription elongation factor n=2 Tax=Desulfovibrionaceae RepID=Q1MQY9_LAWIP Length = 440 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 145/436 (33%), Positives = 260/436 (59%), Gaps = 6/436 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E+ ++ +S +K L R+ + + LE A+ T+ ++Y +DV V + +G+ + ++ Sbjct: 1 MNLELKKALDQISKDKGLDRDMLVDTLEDAVRTSVIRRYGDNLDVEVSYNDDTGEIEVYQ 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +VV+EVT P ++++ A+ D S L D + +++ RI Q+AKQVI+Q++R+ Sbjct: 61 FKIVVEEVTDPITQLSITEAKTHDPSAQLDDEMGFRLKVEDLGRIAAQSAKQVIIQRMRD 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ ++ +++++ GEI++G+V++ ++ ++LG EA++ +++ +P+E+++ GDRV+ Sbjct: 121 AEQEIIYEEYKDRIGEIVSGIVQRRDKGGWIINLGR-TEALLPKDEQIPKEHYKRGDRVQ 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 G++ VR E RG Q+ ++R+ + + LFR EVPE+ + ++I ARDPGSRAK+ V + Sbjct: 180 GLIIDVRKEGRGPQVIISRAHRDYMAALFRREVPEVDDGTVQIMGVARDPGSRAKVTVLS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ++ +DPVGACVG+RG+R+Q + EL GERIDIV+W + NA+APA ++ I VDE Sbjct: 240 RERDVDPVGACVGVRGSRIQNIVQELHGERIDIVIWSPEITTYARNALAPAIISRITVDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 ++ +++ V L AIGR GQNV+LA++L GW++++ T E++A Sbjct: 300 TENLLEVTVPDDQLTSAIGRKGQNVKLAAKLLGWKIDIFTET-----RYNESNAVGRGLE 354 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420 + + E L+ G +TLE++ +EL+E G+ E V LR T Sbjct: 355 QVASVAEISIETLLHSGLNTLEQINETSDEELIEKLGISESQVNDLRAAVNFLSTTATVD 414 Query: 421 QEESLGDNKPADDLLN 436 + + + N Sbjct: 415 SNKKKKEVEAEQAKDN 430 >UniRef50_D1U699 NusA antitermination factor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U699_9DELT Length = 466 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 143/405 (35%), Positives = 246/405 (60%), Gaps = 6/405 (1%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 E+ ++ +S ++ + R+ + + LE A+ +A +K+ + +D+ V + SG+ + F Sbjct: 2 SELKKAIDQISKDRGIDRDLLIDTLEEAVRSAVARKHGETMDIEVAFNEDSGEIEVFEFK 61 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 +VV EV P EI+LE AR D + L D + + RI Q+AKQVI+Q++R+AE Sbjct: 62 VVVAEVHDPISEISLENAREHDPNAQLDDEMGFPVRIEDLGRIAAQSAKQVIIQRMRDAE 121 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 + ++ +++++ GEI +G+V++ +R ++LG EA++ +++ +PRE ++ GDRV+ Sbjct: 122 QEIIFEEYKDRLGEITSGIVQRRDRTGWIINLGR-TEALLPKDEQIPRERYKRGDRVQAY 180 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND 242 + V E+RG Q+ V+RS P+ +IELF+ EVPE+ + ++I ARDPG RAK+AV + D Sbjct: 181 IIDVLKESRGPQVVVSRSHPDYMIELFKREVPEVADGTVKIMGVARDPGLRAKVAVMSRD 240 Query: 243 KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK 302 + +DPVGACVG+RG+R+Q V E+ GERIDIV+W + A + +A++PA + I VD+++ Sbjct: 241 RDVDPVGACVGIRGSRIQNVVQEMKGERIDIVVWSPDIAMYAQHALSPAVITRITVDDEE 300 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKY 362 +++ L AIGR GQNV+LA++L GW++++ T E +A+ + Sbjct: 301 EALEVVCPDDQLTLAIGRKGQNVKLAAKLLGWKIDIFTES-----RYGELNASRKGMDQV 355 Query: 363 LDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALR 407 + E GF +LE + +ELL I GL + + +R Sbjct: 356 ASVAEIPMESFFNAGFESLESIVRATNEELLAINGLTKSKIGDIR 400 >UniRef50_B9XFC0 NusA antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XFC0_9BACT Length = 425 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 141/401 (35%), Positives = 237/401 (59%), Gaps = 1/401 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN + L V+E EK + R+ + A+E +L +A KK ++R ID KSGD F Sbjct: 1 MNADFLTVLEFWEREKGISRQVLISAVEESLLSAAKKAVGPARELRCIIDPKSGDIKAFA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + +V ++V I+L A+ LG+ VE ++ F RI +Q AKQ ++Q +R Sbjct: 61 KLIVSEKVVSKHDHISLPDAKKIKPDAQLGEEVEVEVTPAGFGRIASQYAKQSLMQHIRR 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ ++ +F++ G+II+GVV++ +R ++S+DLG EA++ + +P E ++ G+R+R Sbjct: 121 AEKQLIFTEFKDRVGDIISGVVRRFDRSDVSVDLGKY-EALLPNRERVPTEEYQIGERIR 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + +V G ++ ++R+ P +I+LF++EV EI + IEIK AR+PG R K+AV T Sbjct: 180 CYVKAVENGPHGPEIILSRADPRFVIKLFQLEVSEINDGTIEIKGIAREPGFRTKLAVYT 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D+++DPVGACVG+RG RV+ + EL E++DI+ W+ N F+ NA+APA + + VDE Sbjct: 240 RDEKVDPVGACVGLRGQRVKNIVRELNNEKVDIIRWEPNIKGFLTNALAPAQLKTFEVDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + I V L+ AIG+ GQN RL+S+L+GW++++ + + + A+ T Sbjct: 300 ANKRVKIVVGEDQLSLAIGKRGQNARLSSKLTGWQVDIEPEVVHRMGFEEKVAEAVKTLA 359 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEP 401 I ++ A LV +G + LE+L + +L I + + Sbjct: 360 AIPGITQEQADTLVHQGLTRLEDLLQADISDLSGIPQIGDQ 400 >UniRef50_B8J1Y6 NusA antitermination factor n=5 Tax=Desulfovibrionales RepID=B8J1Y6_DESDA Length = 449 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 152/430 (35%), Positives = 266/430 (61%), Gaps = 9/430 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E+ ++ +S +K L R + + LE A+ T+ +++ +++DV V + ++GD + ++ Sbjct: 1 MNLELKKAIDQISKDKGLDRNMLIDTLEDAVRTSVLRRFSEDMDVEVSYNDETGDIEVYQ 60 Query: 61 RWLVVDE--VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118 +V+ + V P +I L AR D S+ + D + +++ RI Q+AKQVI+Q++ Sbjct: 61 FKIVMADGDVANPDTQIELAEAREHDPSVQVDDEMGFRVKVEDLGRIAAQSAKQVIIQRM 120 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 R+AE+ ++ +++++ GEI++G+V++ ++ ++LG EA++ RE+ +PRE+++ GDR Sbjct: 121 RDAEQEIIYEEYKDRVGEIVSGIVQRRDKGGWVVNLGR-TEAILPREEQIPREHYKRGDR 179 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 V+ ++ VR E RG Q+ ++R+ + + LFR EVPE+ + V++I ARDPGSRAK+AV Sbjct: 180 VQALIIEVRQEGRGPQVVISRAHRDYMAALFRREVPEVDDGVVQIMGVARDPGSRAKVAV 239 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 + ++ +DPVGACVG+RG+R+Q + EL GERIDIV+W + A + NA+APA V+ IVV Sbjct: 240 LSRERDVDPVGACVGVRGSRIQNIVQELHGERIDIVVWSADIATYARNALAPALVSRIVV 299 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 DE+++ +++ V L AIGR GQNV+LA++L GW++++ T EA+A Sbjct: 300 DEEENLLEVIVPDDQLTNAIGRKGQNVKLAARLLGWKVDIFTET-----RYNEANAIGHG 354 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418 + + E L+ G+S+L++L +EL + + + LR A N LA + Sbjct: 355 LEQVASVAEVSIEALLGAGYSSLDQLRQATDQELSDKLTISASRIADLRS-AINFLAPVV 413 Query: 419 QAQEESLGDN 428 + ES Sbjct: 414 EETPESSAVE 423 >UniRef50_D1AUG3 Transcription elongation factor n=5 Tax=Anaplasma RepID=D1AUG3_ANACI Length = 524 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 167/504 (33%), Positives = 285/504 (56%), Gaps = 20/504 (3%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N E++ V V+ +K L E + +A+E AL ++ KY + ++ IDRK+G R+ Sbjct: 18 NLELIRVARDVAEQKGLNLEMVVDAIEQALELVSRSKYG-DCKIKASIDRKTGVISISRQ 76 Query: 62 WLVVDEVTQPTKE--------------ITLEAARYEDESLNLGDYVEDQIESVTFDRITT 107 LVV++ E I + A + + + +GD + + + V D + Sbjct: 77 ALVVNDDMSFDGEQYGIPSGEVNKYKLIKISDAVADGKDVKVGDILLEPLPPVDVDYNSA 136 Query: 108 QTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM 167 + AKQ + Q + ER ++F++ G+++ GVVK+V +N+ +DL N +E + + Sbjct: 137 KVAKQKVAQLILIQERKRQYEEFKDRVGDLVYGVVKRVEYNNVVVDL-NGSEGYLPVYNT 195 Query: 168 LPRENFRPGDRVRGVLYSVRPEA-RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 + E FRP DRV+ + VR E G Q+F++R + LF+ E+PE+ + ++ IKA Sbjct: 196 IRGEVFRPNDRVKAHVEEVRQEELSGPQIFLSRVSKRFMELLFKQEIPEVYDGIVSIKAL 255 Query: 227 ARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVIN 286 ARDPGSR+K+AV ++DK +DPVGAC+G RG R+Q + +EL GE+ID+VL+ + A+FV++ Sbjct: 256 ARDPGSRSKVAVFSSDKNVDPVGACIGARGVRIQNIVSELHGEKIDVVLYSSDLAKFVVS 315 Query: 287 AMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA 346 A+APA+V +++DED +++ V ++ AIGR GQN+RLAS+L GWE++V+ + Sbjct: 316 AIAPAEVVKVIIDEDVEKIELVVPENQVSLAIGRYGQNIRLASELVGWEIDVIGDETEST 375 Query: 347 KHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEAL 406 + E + F LD++E +LV EGFST+E+L V + E+ I+G +E L Sbjct: 376 RKAKELSSGAKVFVDGLDVEEIIGQLLVSEGFSTIEDLDKVDVAEITAIDGFNEEIAVEL 435 Query: 407 RERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDD 466 ++RA L + E L ++++L L ++ + KL G+ +ED+A D+ Sbjct: 436 KKRAAEYLVRRREEALEILKSMSVSEEVLELPYLEIEDVVKLCEGGIRNVEDIASMCTDE 495 Query: 467 LAD---IEGLTDEKAGALIMAARN 487 D L+ E+ ++I+ +R Sbjct: 496 FYDTVPKARLSKEQVDSIILESRR 519 >UniRef50_A6TRL0 NusA antitermination factor n=5 Tax=Firmicutes RepID=A6TRL0_ALKMQ Length = 346 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 131/347 (37%), Positives = 222/347 (63%), Gaps = 1/347 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+ E + +E + +K + R+ +F+ALE+AL ++ K+ + ++VRV++ R +GD + Sbjct: 1 MSLEFIEALEQIEKDKGISRDVLFDALEAALISSYKRNFGSAVNVRVEMLRDTGDVHVYS 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + VV+ V EI ++ A+ D + L D VE Q+ F RI QTAKQV+VQ++RE Sbjct: 61 QKKVVEVVEDDLLEINIDEAKEIDPNYALDDIVEKQVTPRNFGRIAAQTAKQVVVQRIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER +V ++F E EIITG V +V + N+ ++LG EA++ + +P E + DR++ Sbjct: 121 AERGIVYEEFINRESEIITGTVSRVAKGNVYINLGK-TEAILGPNEQIPNEVYNHADRIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V+ +G Q+ V+R+ P ++ LF +EVPEI + V+E+K+ +R+ GSR KIAV + Sbjct: 180 TYIVEVKNTTKGPQIHVSRTHPGLVKRLFELEVPEIHDGVVEVKSISREAGSRTKIAVFS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D+ +DPVGACVG +G+RVQ + EL GE+IDI+ + + P +F+ N+++PA V + V+ Sbjct: 240 IDENVDPVGACVGPKGSRVQMIVDELKGEKIDIIKYSEEPKEFISNSLSPAKVLNARVNP 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK 347 + T + V L+ AIG+ GQN RLA++L+GW++++ + ++ Sbjct: 300 EDKTARVIVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVKTD 346 >UniRef50_D2L1U7 NusA antitermination factor n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1U7_9DELT Length = 496 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 142/410 (34%), Positives = 248/410 (60%), Gaps = 8/410 (1%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+ ++ +S ++ + R+ + + LE A+ ++ +KY + +DV V + + G+ + ++ + Sbjct: 3 ELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQFKV 62 Query: 64 VVDEVTQ--PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VV++ P EI L AR D ++ L D + ++ RI Q+AKQVI+Q++R+A Sbjct: 63 VVEDDDVADPAAEICLADARAIDPNVALEDEMGFKLTVEDLGRIAAQSAKQVIIQRMRDA 122 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E+ ++ +++++ +GEII+G++++ +R ++LG EA++ +E+ +PRE ++ GDRV+ Sbjct: 123 EQEIIYEEYKDRKGEIISGIIQRRDRSGWIINLGR-TEALLPKEEQIPRERYKRGDRVQA 181 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + V P RG Q+ V+R+ + + LF EVPE+ + ++I ARDPGSRAK+AV + Sbjct: 182 YIIEVLPSGRGPQIIVSRTHADYMKALFAREVPEVSDGTVKIVGVARDPGSRAKVAVISK 241 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D+ +DPVGACVG+RG+R+Q + EL GERIDIV+W+ A + NA++PA V I VDED Sbjct: 242 DRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIATYAANALSPARVTRISVDED 301 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 +++ V L AIGR GQNV+LA++L GW++++ T + E +A+ + Sbjct: 302 DKALEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIFTESRFR-----EVNASKKFLEQ 356 Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 411 + E ++ GF ++E+LA P + + I G+ LR K Sbjct: 357 LASVAEIPVDNIISAGFESMEQLADAPDEAIDAISGMTPSKRNDLRAALK 406 >UniRef50_B3WER8 Transcription elongation protein NusA (Transcription termination-antitermination factor NusA) n=78 Tax=Firmicutes RepID=B3WER8_LACCB Length = 417 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 138/373 (36%), Positives = 229/373 (61%), Gaps = 3/373 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE++ ++A+ EK + +E + EALE+AL +A K+ Y Q +V V+ D K GD + Sbjct: 1 MSKEMIQALDALEQEKGVKKEVVIEALEAALVSAYKRNYNQAQNVDVEFDPKQGDIHIYA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V DEV E++L+ A +++ +GD ++ ++ F RI QTAKQVI+Q+VRE Sbjct: 61 VKEVTDEVFDSRLEVSLKEALAINKAYEIGDQIKFEVTPKDFGRIAAQTAKQVIMQRVRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER++V D++ ++E EI+ GVV++ + I ++LG EAV+ R+D +P E + DR++ Sbjct: 121 AERSIVYDEYSQYEDEILQGVVERRDNRFIYVNLGK-IEAVLGRQDQMPNEKYEAHDRIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V ++G Q+FV+R+ P ++ LF EVPEI + +EI AR+ G R KIAV++ Sbjct: 180 VYVTKVENTSKGPQVFVSRTHPGLVKRLFEQEVPEIFDGTVEIVNIAREAGDRTKIAVRS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 + +D VG VG RGARVQAV EL GE +D+V W+++PA ++ NA+ PA V ++ ++ Sbjct: 240 TNDAVDAVGTTVGPRGARVQAVVNELSGENMDVVQWEEDPADYIANALNPAQVIAVQFND 299 Query: 301 D--KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 + + + V L+ AIG+ GQN RLA++L+G+++++ +++ E A Sbjct: 300 EANDRSATVIVPDYQLSLAIGKKGQNARLAAKLTGYKIDIKPESEVEFVDDDELPEAEAE 359 Query: 359 FTKYLDIDEDFAT 371 + + D AT Sbjct: 360 AAAETNDNADAAT 372 >UniRef50_A0Q8F4 Transcription elongation factor n=17 Tax=Francisella RepID=A0Q8F4_FRATN Length = 489 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 205/500 (41%), Positives = 330/500 (66%), Gaps = 19/500 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE+L V+E V+NEK + ++ +FEA+E ALA TKK+ ++ +++ V+IDR +GDF R Sbjct: 1 MSKELLLVLETVANEKDISKDLLFEAMEEALAIITKKELDEHMNIEVKIDRVTGDFKADR 60 Query: 61 RWLVV---DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 W +V +++ +KE+ + A+ + ++ GD + + +E + RI AKQ++++K Sbjct: 61 VWHIVSEDEDLIDYSKELYEDVAQEKGYNVKAGDVIREPVEVKEYGRIAATMAKQILMKK 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 ++ ER ++ G+I+ G +K+ + + +DLGNNAE ++ ++D++ RE +R GD Sbjct: 121 IKNFEREKSARFYQNKIGDIVYGEIKRATYEILVVDLGNNAEGILPKKDLIARERYRVGD 180 Query: 178 RVRGVLYSVRPEARGAQ--LFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 ++R + +V + G + ++RS ML LF++EVPE+ EE+I I R+PG R+K Sbjct: 181 KIRACVEAVESDESGKPNTIMLSRSSNTMLKALFKLEVPEVEEELINIVNVVREPGFRSK 240 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAP---AD 292 + VK+ND+RIDP GACVG+RG+R+ ++ +EL GE++D++LW+++ Q+ IN+++P AD Sbjct: 241 VTVKSNDQRIDPCGACVGVRGSRIHSIMSELNGEKVDVILWNEDMVQYAINSLSPVDAAD 300 Query: 293 VASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 352 + + VDE+ ++MDI V+ +L++AIG+NG NVRLAS L GW++NV++ + + K + Sbjct: 301 ILEVNVDEETNSMDIVVKQESLSKAIGKNGVNVRLASSLIGWKINVLSDAEQEEKQMSIV 360 Query: 353 HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 412 F + LDID DFA VL+EEG TLE+LAY+ ELLEIEG DE V+ L+ERAK Sbjct: 361 EK----FVEALDIDHDFALVLIEEGIETLEDLAYLDRAELLEIEGFDEEIVDELQERAKA 416 Query: 413 ALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEG 472 + + A LG KPA DLL+++G+ DLA +LA + T+EDLAE +D+L DI Sbjct: 417 VILSQA------LGGKKPAQDLLDMQGMSLDLAEQLAQNNIVTMEDLAELSVDELLDIVD 470 Query: 473 LTDEKAGALIMAARNICWFG 492 + +E+A LIM AR WF Sbjct: 471 MDEEQATNLIMQAR-APWFE 489 >UniRef50_Q5GS98 Transcription elongation factor, NusA n=13 Tax=Rickettsiales RepID=Q5GS98_WOLTR Length = 520 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 161/498 (32%), Positives = 273/498 (54%), Gaps = 15/498 (3%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N +I+ +S +K L E I +ALESA+ +KY + V V IDR +G+ ++R Sbjct: 21 NLDIIKTAGEISLQKGLDFEVIMKALESAIEAVAYQKYGSKSKVVVNIDRSTGEVISYRE 80 Query: 62 WLVVDEVTQPTKE-----ITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQ 116 VVD+ + ITL A+ E +GD + +++ S+ D + + A+Q I Q Sbjct: 81 LKVVDDEPNGEEHNGYGSITLTQAKLIKEDAKVGDTI-NELLSLNTDLASARIAQQRIAQ 139 Query: 117 KVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPG 176 ++ E ++F++ GEI G+VK+V ++ +D+ N A + +++ E FR G Sbjct: 140 VIKYEELKKQYEEFKDKVGEIRYGIVKQVEYSDLIIDI-NGTRAYLPLRNLIGGELFREG 198 Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 D+++ + +V+ G Q+ ++R+ L L E+PEI + ++ +K ARD GSR+K+ Sbjct: 199 DKIKAYIQTVKRSDDGRQIILSRASEGFLEALLSQEIPEIADGLVTVKGIARDAGSRSKV 258 Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296 AV + DK IDPVGACVG++G R++A+ EL GE+ID+V + + QFVI A+ PA+V+ + Sbjct: 259 AVFSPDKNIDPVGACVGVKGERIKAIIHELNGEKIDVVHYFSDLGQFVIKAITPAEVSKV 318 Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356 ++DE ++ +++ V L+ AIG+ GQNVRLAS+L GW++ +++ + E Sbjct: 319 IIDESENCVELIVAEDQLSLAIGKKGQNVRLASELIGWKIEILSTQQESERRNRELSQCS 378 Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 416 F + L+++E +LV EGFS++E+++ +KEL IEG +E LR RA L Sbjct: 379 ALFAEALNLEEIMGQLLVTEGFSSVEDISNASIKELASIEGFNEDIASELRNRANRYLKA 438 Query: 417 IAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLT-- 474 + E L D++NL + D L+ G+ TLE++A+ + I + Sbjct: 439 ENDRKIEELKSLGMESDVINLP-LSIDDKIALSEHGIKTLENIADLSSYEFCSILSSSAS 497 Query: 475 -----DEKAGALIMAARN 487 ++IM AR Sbjct: 498 DKENLKNTVNSIIMEARK 515 >UniRef50_A9AV46 NusA antitermination factor n=11 Tax=Bacteria RepID=A9AV46_HERA2 Length = 444 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 139/442 (31%), Positives = 242/442 (54%), Gaps = 12/442 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQE---IDVRVQIDRKSGDFD 57 M + A + ++ E+ +PRE + + +E AL +A ++ +DV+++++ +G Sbjct: 1 MKSDFYAAISQIAAERGIPRESVQDVVEQALISAYRRYLGSNPPPVDVKIELEPNTGRIR 60 Query: 58 TFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 + VVDEV EI +E AR + +G+ V + F RI QTAKQV++Q+ Sbjct: 61 VYAEKQVVDEVMDDRFEIDIEDARNVRADVEIGETVYVESTPDDFGRIAAQTAKQVVLQR 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 ++E ER + ++ + EGEI+T V++ + N+ L++G AEA++ +++ + +N+R G Sbjct: 121 IKEVERDHIYGEYFDREGEIVTATVQRTAKGNVILEVGR-AEAILPQKEQISHDNYRHGQ 179 Query: 178 RVRGVLYSVRPE-ARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 R++ L R + RG +L +R+ +++ LF +EVPEI +EIK+ AR+PG R+K+ Sbjct: 180 RLKVYLMEARRDDPRGPRLVASRTHKDLIKRLFEMEVPEIYNGTVEIKSIAREPGLRSKV 239 Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296 AV + IDPVG+CVGMRG R+Q + EL GE+ID+V W + F+ NA++PA V + Sbjct: 240 AVHARQEGIDPVGSCVGMRGIRIQNIVNELNGEKIDVVQWGADMRVFIANALSPAQVVEV 299 Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356 +DE + T + V L+ AIG+ GQNVRLA++L GW +++ + L + +A A A Sbjct: 300 HLDEGEKTATVVVPDKQLSLAIGKEGQNVRLAAKLVGWRIDIKSASSLLEEERAAAEARE 359 Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKE--LLEIEGLDEPTVEALRERAKN-- 412 ++ + + +T VE ++ L ++ L +E + E LR A+ Sbjct: 360 AAASEQMLQEAALSTAKVETRKVRVDSLVTYQGRQYGPLPVELIGEEVA--LRAAAQKLN 417 Query: 413 -ALATIAQAQEESLGDNKPADD 433 A + +D+ Sbjct: 418 IYFNDKLIASYIIDDEAGDSDE 439 >UniRef50_C4XIM5 Transcription elongation protein NusA n=4 Tax=Desulfovibrio RepID=C4XIM5_DESMR Length = 463 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 143/432 (33%), Positives = 258/432 (59%), Gaps = 9/432 (2%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+ ++ +S ++ + R+ + + LE A+ ++ +KY + +DV V + + G+ + ++ + Sbjct: 3 ELKKAIDQISKDRGIDRDLLVDTLEEAVRSSVIRKYGENLDVEVSYNDEQGEIEVYQFKV 62 Query: 64 VVDEVTQ--PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VV++ P EI L A+ D ++ L D + ++ RI Q+AKQVI+Q++R+A Sbjct: 63 VVEDDDVADPAAEICLSDAKAIDPNVALEDEMGFKLAVEDLGRIAAQSAKQVIIQRMRDA 122 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E+ ++ +++++ +GEII+G++++ +R ++LG EA++ +E+ +PRE ++ GDRV+ Sbjct: 123 EQEIIYEEYKDRKGEIISGIIQRRDRAGWIINLGR-TEALLPKEEQIPRERYKRGDRVQA 181 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + V P RG Q+ V+R+ + + LF EVPE+ + ++I A ARDPGSRAK+AV + Sbjct: 182 FIIEVLPSGRGPQIIVSRTHGDYMKALFAREVPEVSDGTVKIVAVARDPGSRAKVAVISK 241 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D+ +DPVGACVG+RG+R+Q + EL GERIDIV+W+ A + NA++P+ V I VDED Sbjct: 242 DRDVDPVGACVGIRGSRIQNIVQELRGERIDIVVWNPEIASYAANALSPSRVTRISVDED 301 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 + ++++ V L AIGR GQNV+LA++L GW+++++T + EA+A+ + Sbjct: 302 EKSLEVVVTDDQLNLAIGRKGQNVKLAAKLLGWKIDIVTESRFR-----EANASKKFLEQ 356 Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421 + E ++ GF ++E+LA + + I G+ + LR K + + Sbjct: 357 LASVAEIHVDNIIAAGFVSMEQLAEADDEAIDAIVGMTPSKRDDLRAALK-LMGAFDKPA 415 Query: 422 EESLGDNKPADD 433 D +D Sbjct: 416 PADDEDAPTDED 427 >UniRef50_Q044C0 Transcription elongation factor n=45 Tax=Bacilli RepID=Q044C0_LACGA Length = 423 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 140/407 (34%), Positives = 232/407 (57%), Gaps = 3/407 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE++ + EK + +E I +A+++AL A KK Y Q +V V D K G+F Sbjct: 18 MSKEMVEAFATLEKEKGIKQEIIVDAIKAALVAAYKKNYNQAQNVEVVFDEKKGNFKVNA 77 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVDEV E++L+ A + + +GD + ++ F R+ QTAKQVI+Q++RE Sbjct: 78 IKTVVDEVQDSRLEVSLKDALEINRAYEVGDEIRFEVTPKDFGRLAAQTAKQVIMQRLRE 137 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER ++ ++ +++ EI+TG V++ + + + +GN EAV+ D LP EN+ P D+VR Sbjct: 138 AEREHIISEYSQYKDEIVTGTVERRDNRFVYVKIGN-VEAVMTHNDQLPGENYNPQDKVR 196 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 ++ V +++GAQ+ V+R+ P+++ LF EVPE+ + +EI + AR+ G R KIAVK+ Sbjct: 197 VLVTRVGSDSKGAQITVSRTAPDLVKRLFEQEVPEVYDGTVEIVSIAREAGDRTKIAVKS 256 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV-- 298 ND IDPVG VG +G RVQ + ELGGE ID+V +++NP+ F+ NA+ PA+V ++ Sbjct: 257 NDPDIDPVGTLVGPKGTRVQNIVNELGGENIDVVKYEENPSDFIANALNPAEVIAVQFSG 316 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 D+D + V L+ AIG+ GQNVRLA++L+G+++++ ++ D Sbjct: 317 DDDDKNALVIVPDYQLSLAIGKRGQNVRLAARLTGYKIDIKPESQVEFVDSEGDDVETDQ 376 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEA 405 ++ + AT E + +++ D E Sbjct: 377 DIDDSNVSNEEATESTAEQLEEDSSEDFPNGEDVDSALDDDADKDEE 423 >UniRef50_C1F696 Transcription termination factor NusA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F696_ACIC5 Length = 548 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 149/443 (33%), Positives = 246/443 (55%), Gaps = 10/443 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M + +EA+S +K + E + A+E A+A AT+K Y+ + ++R ++DR++G+ + Sbjct: 1 MASVLYQSIEALSRDKGIDPEVVVGAVEDAIALATRKYYKTQENMRAELDRETGEIRAYI 60 Query: 61 RWLVVDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 VV+ + P +ITLE AR + +G + + RI Q AKQVI QK Sbjct: 61 YKAVVETPELIEDPLNQITLEEARQLAPGVEVGGEIRFYKPTDVLGRIAAQMAKQVIFQK 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 VREAER V +++ GE++T VK+V ++ DLG AEA + + + E F G+ Sbjct: 121 VREAERDTVFNEYAHRVGEVLTATVKRVEMQDVIFDLGK-AEARMPKREQSRLEQFSVGE 179 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 RVR VL V A+G Q+ V+R+ PE++ LF+ EVPEI + + I+A AR+ G R KIA Sbjct: 180 RVRVVLLRVDRAAKGPQVIVSRAAPELVTSLFQGEVPEIYDNTVTIRAIAREAGERTKIA 239 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V + DK +DPVGACVGM+G RVQ++ EL GE+IDI+ + + F A+ PA V+ + Sbjct: 240 VMSRDKDVDPVGACVGMKGMRVQSIIRELRGEKIDIIEFSEEVTTFAERALQPAKVSRVS 299 Query: 298 VDE-DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA---- 352 + + + +++ V+ L+ AIG+ GQNVRLA++L GW++++ + ++ + + + + Sbjct: 300 IADLSEKHLEVIVDDTQLSLAIGKKGQNVRLAAKLLGWKIDIKSEEEKRQEVEQQMGGFA 359 Query: 353 -HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 411 + ++ E LV G +T+E LA + ++L EI G+ E T+E + + Sbjct: 360 QGGTATAIEEVKELGESIIQKLVAAGITTVESLADMTPEQLEEIPGIGEKTLEKISTAVR 419 Query: 412 NALATIAQAQEESLGDNKPADDL 434 + +E L Sbjct: 420 HYFGQYEPGEERPAVPEAEQAKL 442 >UniRef50_B5JHK3 Transcription termination factor NusA n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHK3_9BACT Length = 419 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 147/421 (34%), Positives = 247/421 (58%), Gaps = 2/421 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+ EIL+V+E + EK + RE + A+ +A+ A K ++++ ID + G + + Sbjct: 1 MSSEILSVLEYMEKEKGIGREDMISAIVTAIKNAAAKGVNAGQELKITIDPRHGKMNAWA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVD V+ P EI+LE AR D+ LN+GD E +I+ RI QTA+Q I+Q++R+ Sbjct: 61 LLDVVDSVSDPKTEISLEKARQIDDELNIGDVFEKEIDPAYLGRIAAQTARQAIMQRLRQ 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + D F++ G+I++G+V++ R ++ +DLG AEA++ D +P E++ PG+R+R Sbjct: 121 FEKERIYDDFKDQVGDIVSGIVRRRERGDLIVDLGK-AEAMMPSRDQVPGEDYSPGERIR 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +L + RG +L +TRS P+ ++ LF +EV EI + ++I+A +R+PG R KIAV + Sbjct: 180 CLLLKIEATNRGPELILTRSNPKFVLRLFDLEVTEIADGTVKIEAFSREPGYRTKIAVTS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 +D ++DPVGACVG RGARV+++ ELGGE+IDI+ + ++P + + A+ PA ++++DE Sbjct: 240 SDPKVDPVGACVGARGARVKSIVRELGGEKIDIIRYFEDPKEMALEALKPAIPRNVIMDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + I V +LA AIGR GQN RL S+L GW++++M + + + A Sbjct: 300 RSRRISIEVSEDDLAIAIGRKGQNARLTSKLVGWKIDIMKEEVKVVSMETKQAEAAQGLN 359 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420 + ID A LV G + E V +L+E+ G + + + + + Sbjct: 360 QIEGIDSATAERLVNNGLISPELFLDVEEDDLVEM-GFSAEEAADIIAKVTTFIQSQNIS 418 Query: 421 Q 421 Sbjct: 419 S 419 >UniRef50_B3DXW5 Transcription elongation factor n=2 Tax=Verrucomicrobia RepID=B3DXW5_METI4 Length = 441 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 138/412 (33%), Positives = 238/412 (57%), Gaps = 3/412 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN+E+LA++E + EK + R+ EA++SAL A KK D+RV+I K+G + Sbjct: 24 MNQEVLAIMEYMEKEKGINRQVFIEAMQSALLAAAKKSIGPARDLRVEIHPKTGRINVRA 83 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + VV++V +I+L+ AR D ++N+GD VE ++ F RI Q KQ I Q ++ Sbjct: 84 KLEVVEKVQNSHDQISLKRAREIDPNVNIGDLVEVEVTPKDFGRIAAQVFKQTINQALKG 143 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 ER MV+ +F++ I++G ++++ R +I +DLG E ++ ++ +P E + G+R++ Sbjct: 144 IERKMVLSEFKDRINNIVSGTIRRIERSDIIIDLGRY-EGIMPFKERVPTEEYVVGERIK 202 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + SV G + ++RS P ++ L +EV E+ ++++E+KA AR+PG R KIAV + Sbjct: 203 AYVLSVDDTPHGPMIILSRSHPNFILRLLELEVSEVADKIVEVKAIAREPGFRTKIAVWS 262 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ++ +IDPVG+CVG+RGARV+ + EL E+ID+ W N + I A+ PA V + VD+ Sbjct: 263 SNPKIDPVGSCVGVRGARVKNIVRELHSEKIDLFKWSPNVEELAIEALKPAKVKKVEVDQ 322 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDL-QAKHQAEAHAAIDTF 359 H + + V+ N + A+G+ G+N LAS++ GW+++++ + A + Sbjct: 323 QNHRVKVTVDEENYSIALGKKGKNAWLASKIVGWDIDIVKEPSFVVDNFTQKITKAAEEM 382 Query: 360 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLE-IEGLDEPTVEALRERA 410 L ID+ A +V GF E +A ++L+ + LD + L+E A Sbjct: 383 ASSLAIDQSVAEQIVRAGFINPEAVAESEEEDLMSALPELDPQLIHRLKEAA 434 >UniRef50_D1N2Z3 NusA antitermination factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2Z3_9BACT Length = 414 Score = 406 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 145/414 (35%), Positives = 233/414 (56%), Gaps = 6/414 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M E+L ++E + E+ + R+ + +ALESA+ TA +K +++V+ID +G + Sbjct: 1 MANELLTILEYIEQERGISRDSLIKALESAILTAARKSIHPASELKVKIDPVTGQIQAWA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV+E ++ + AR + LG+ VE ++ F RI QTA+Q IVQ++R+ Sbjct: 61 TLEVVEENP-TCDQLVIARARERFPDVQLGEKVEWEVTPRNFGRIAAQTARQAIVQQLRK 119 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ V ++F + G+II+G V++ NI +D AE ++ ++ + E + PGD +R Sbjct: 120 AEKENVQEEFADRIGQIISGTVRRFEAGNIIIDFQK-AEGIMPSKEKIHDEQYMPGDIIR 178 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +L V G L V+RS PE + LF E+ EI + V++I AR+ G R KI+V + Sbjct: 179 ALLLRVDINTAGPSLIVSRSCPEFVTRLFEREIAEIHDGVVKIMGIAREAGKRTKISVMS 238 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D R+DPVGACVGMRG RV+ ++ ELG ERIDIV +D + ++ NA+ PA V S+ V+E Sbjct: 239 TDPRVDPVGACVGMRGQRVRNITNELGNERIDIVPYDADIRKYATNALLPAKVQSVEVNE 298 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK----HQAEAHAAI 356 KH + + V A G+ QNVRL S+L GW +N+ ++ A+ + A Sbjct: 299 AKHELIVRVTDEQSKLAFGKKAQNVRLCSKLIGWNINIRNEEERGAEAGHSIGEQLKIAA 358 Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 410 + + + E A +LV G+ T++ + + LLEIEG+D ++ ER Sbjct: 359 QKLAEAIGVSEATAGLLVNNGYVTVDGVKAADPEALLEIEGIDTAEMQNALERL 412 >UniRef50_B2KC94 NusA antitermination factor n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KC94_ELUMP Length = 463 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 148/457 (32%), Positives = 248/457 (54%), Gaps = 27/457 (5%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 KE++ +E++ EK + R+ I + +E AL +A +K + + +I+ + GD F+ Sbjct: 6 KELMMALESLEREKNIKRDDIIKTIEDALVSALRKNLGKTAQISAKINPEEGDIKAFQVL 65 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 +V+ V P EI+LE A+ D+ +G + + +E F RI Q AKQV++QKVR E Sbjct: 66 NIVEIVANPEMEISLEQAKAMDDRSEVGGTITNVLEVEDFSRIAAQIAKQVLIQKVRGIE 125 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 R +F+ EGE+ITG V++ + +I +DLG EA++ + + RE + G R++ + Sbjct: 126 RENTYKEFKPREGEVITGSVRRFSDRDIVVDLGK-VEAILPYSEQIKRERYSNGSRIKAI 184 Query: 183 LYSV-------------------------RPEARGAQLFVTRSKPEMLIELFRIEVPEIG 217 + V RG + ++R+ P L +LF++EVPEIG Sbjct: 185 ITKVLSQQDLLTIGEDPVLGRYKSAAFKMDKGQRGPYVILSRTSPAFLEDLFKVEVPEIG 244 Query: 218 EEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWD 277 E ++EIKA RDPG RAK+ V++ D ++DP+G CVGMRG R++A+ EL GERID++ + Sbjct: 245 EGIVEIKAIQRDPGFRAKVVVRSYDNKVDPIGTCVGMRGIRIRAIMNELSGERIDLIPYS 304 Query: 278 DNPAQFVINAMAPADVASI-VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWEL 336 ++ ++N++APA S+ ++ ++ I V LA AIG++ QN++LAS+L+GWEL Sbjct: 305 EDVTTMIMNSIAPARANSVKIISAEEKKALIIVPDDQLAIAIGKDWQNIKLASKLTGWEL 364 Query: 337 NVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIE 396 V + + QA I A LV+ GFS++E++A + + L ++ Sbjct: 365 EVKSESQKLQEGQATVDNLESLLASVEGIGPKTAETLVKAGFSSVEKIAALEPEHLATVQ 424 Query: 397 GLDEPTVEALRERAKNALATIAQAQEESLGDNKPADD 433 G+ E + + E AK L T + + N + Sbjct: 425 GIGEKSAAKIIEGAKKYLETQGEEVLQEEAVNDDNQE 461 >UniRef50_UPI0001C3544A transcription elongation factor NusA n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3544A Length = 401 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 132/352 (37%), Positives = 221/352 (62%), Gaps = 1/352 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKE+L + + E + ++ + EA+E++L TA K + + +V+V ++ ++ DF + Sbjct: 1 MNKELLEALNILEKENNISKDTLLEAIENSLLTACKNHFGKADNVKVSMNHETCDFSVYA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV+EV P +I+L A+ D ++GD V+ I+S F RI TQ AK VI+QK+RE Sbjct: 61 EKEVVEEVEDPLLQISLAEAKMTDPKYDIGDIVQCPIDSKKFGRIATQNAKNVILQKIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 R + + + E E++TG+V++ N+S++LG +A++ +M+ E F+ +R++ Sbjct: 121 EGRKALYNDWYCQEKEVVTGIVQRYLGKNVSINLGK-VDAILNETEMVKGEVFKATERIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V+ +G ++ V+R+ P+++ LF EV E+ + +EIKA AR+ GSR KIAVK+ Sbjct: 180 VYVLEVKDTPKGPRISVSRTHPDLVKRLFESEVAEVKDGTVEIKAIAREAGSRTKIAVKS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ND+ +DPVGACVG+ GARV ++ EL GE+IDI+ WDDNPA + NA++PA V +V DE Sbjct: 240 NDQNVDPVGACVGLNGARVNSIVNELRGEKIDIINWDDNPAYLIENALSPAKVICVVADE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 352 + + V L+ AIG+ GQN RLA++L+G+++++ + + E Sbjct: 300 ESREAQVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAREMGLFEE 351 >UniRef50_D1B5D7 NusA antitermination factor n=3 Tax=Synergistaceae RepID=D1B5D7_THEAS Length = 369 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 125/344 (36%), Positives = 213/344 (61%), Gaps = 2/344 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 + +E ++ + EK L + I +LE+AL +A +K +V V ID ++G+ Sbjct: 3 LGREFGKALKQLEAEKGLSLDVISSSLEAALVSAYRKFKGGNQNVEVFIDFENGEIFLSE 62 Query: 61 RWLVVDEVTQPTKEITLEAARYED-ESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 VV EVT P EI++E A + GD + ++ F RI QTA+QVI+Q+++ Sbjct: 63 VKQVVREVTCPDTEISVEEAHRMGFGDVEEGDVIRIEVFPENFGRIAAQTARQVIIQRLK 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 +AER ++ ++F + G+++ G + KV D I + L + EA++ RE+ + E +R GDR Sbjct: 123 DAERQIIFEEFADRTGDLVQGTIFKVEGDQILVRLNDRTEAILPREERVLGEAYRVGDRY 182 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 + L VR +G ++ V+R+ P +L +LF +EVPEI + +IEIK R+ G R+K+AV+ Sbjct: 183 KFFLLDVRQTTKGPRIVVSRTHPGLLRKLFELEVPEIRDGIIEIKNVVREAGGRSKVAVQ 242 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV-V 298 + D +DPVGACVG +G R+++V ELGGER+D+++W +P +V NA++PA V + + Sbjct: 243 SLDSNVDPVGACVGPKGTRIKSVMDELGGERVDVIVWSSDPIAYVKNALSPAKVVKVEPL 302 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 + + + + V L+ AIG+ GQNVRLA++L+GW++++ ++ Sbjct: 303 LDQERALRVFVRPDQLSLAIGKAGQNVRLAARLTGWKIDIKVLE 346 >UniRef50_B1ZX42 NusA antitermination factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZX42_OPITP Length = 408 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 146/410 (35%), Positives = 240/410 (58%), Gaps = 5/410 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+ EIL+V+E + EK +PR + + +AL TA +K +++++I+ K+G + Sbjct: 1 MSSEILSVLEYMEKEKGIPRADMIATIANALKTAAQKGVNSGQELKIEINAKNGQLHAWC 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVD V+ P EI +E A+ +G+ +E +I+ T RI QTA+Q ++Q++R+ Sbjct: 61 LLKVVDSVSNPKTEIHVERAQALKPGAIIGEIIEKEIDPSTLGRIAAQTARQAVMQRLRQ 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + D F++ G I+TG V++ R+++ +DLG AEAV+ ++ +P E ++PG+R+R Sbjct: 121 FEKDRIFDDFKDQVGNIVTGTVRRRERNDLYIDLGK-AEAVMPAKEQVPGEEYQPGERIR 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +L ++ RG ++ +TR P+ + LF +EV EI + ++I+A AR+PG R KIAV + Sbjct: 180 CLLLNIESTPRGPEIILTRGSPKFVRRLFELEVTEIADGTVKIEAFAREPGYRTKIAVIS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D ++DPVGACVG RGARV+ + EL GE+IDI+ + +P + +I AM PA I +DE Sbjct: 240 TDPKVDPVGACVGARGARVKTIVRELNGEKIDIIRYFASPREMIIEAMKPAVPREITLDE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 H + + V +LA AIGR GQN RL S+L GW L++ ++ +A AI + Sbjct: 300 KNHRILLKVATDDLAIAIGRKGQNARLTSRLIGWRLDI---EEFRAVGDDPRGNAIASLV 356 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 410 K +D A LV+ G ++ V +L++ G E + R Sbjct: 357 KAFALDATVAGRLVDMGINSPAAFEGVEANDLVD-AGFTEAEATDIIGRV 405 >UniRef50_A6NTX6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A6NTX6_9BACE Length = 400 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 128/384 (33%), Positives = 217/384 (56%), Gaps = 6/384 (1%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKY-EQEIDVRVQIDRKSGDFDTFR 60 KE A + + EK +P+ + E + AL +A K+ + ++ V+ D + G+ + Sbjct: 16 GKEFFAAIGMIEQEKGIPKGYMLEKITQALISAYKRDHEGAGDNIMVEADEEKGEVRMYV 75 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + VV+ V P E++L AR + LGD V ++++ F RI QTA+QVI+Q +RE Sbjct: 76 KKDVVETVDNPYTEVSLADARQRLPHIRLGDVVRVEVKTKDFGRIAAQTARQVIIQGMRE 135 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNR--DNISLDLGNNAEA---VILREDMLPRENFRP 175 AER M+ D+F E E++TGVV +++ + SL +G+ EA + + + E FR Sbjct: 136 AERGMIYDEFSSKEHELLTGVVTRIDPRSGSASLRIGSGNEATDAFLAAGEQVRGETFRE 195 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 GDR++ + VR +G Q+ ++R+ P ++ LF +EVPEI + +E+K+ AR+ GSR K Sbjct: 196 GDRLKVYVVEVRRSTKGPQVLISRTHPGLVKRLFELEVPEIFDGTVEVKSIAREAGSRTK 255 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 +AV + D +DP+GACVG RG RV + EL GE++DI+ + ++PA++V A++PADV S Sbjct: 256 LAVWSADPNVDPIGACVGPRGQRVNNIVEELKGEKVDIIKYSEDPAEYVAAALSPADVIS 315 Query: 296 IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA 355 + +D + + V L+ AIG+ GQN RLA++L+G+++++ + E Sbjct: 316 VTTLDDGKSCRVVVPDDQLSLAIGKEGQNARLAAKLTGFKIDIKPASNPGGDEADELDEV 375 Query: 356 IDTFTKYLDIDEDFATVLVEEGFS 379 + + A +E Sbjct: 376 LVDDVADEADETADAAETADESLD 399 >UniRef50_B5YJX4 Transcription termination factor NusA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJX4_THEYD Length = 365 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 134/361 (37%), Positives = 222/361 (61%), Gaps = 1/361 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M KE+ +VE + EK + ++ + E LE+AL +A +KKY + ++++I+ ++ D + F Sbjct: 1 MGKELKFLVEQIMREKGITKDAVIELLETALISAIRKKYGNKSSIKIKIEPQTFDINIFE 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV+EV EI++E + + +GD VE + F RI QTAK V+ QK+RE Sbjct: 61 IKKVVEEVKDSASEISIEEVKQKYIDKGIGDTVEVPLSIQDFGRIAVQTAKHVLFQKIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 ER+ + ++F++ G I++G V + + N + +G AEA++ +++LP++N + GD V+ Sbjct: 121 IERSQIFEEFKDKVGNIVSGTVLRKEKGNFYILVGK-AEAILPDKEVLPQDNLKRGDIVK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 ++ V+ + + ++R+ P ++ LF +EVPEI + ++EIK ARDPG R KIA + Sbjct: 180 AYIFEVKQTPKEPIIKLSRTHPNFVVGLFTLEVPEIQDGIVEIKTIARDPGERTKIAASS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D +DPVGACVGM+G RVQAV EL GERIDI+ + D+ + F+ A+ PA V + ++E Sbjct: 240 KDPSVDPVGACVGMKGTRVQAVVRELKGERIDIIPYSDDMSFFIAKALTPATVLKVGINE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 ++ T + VE L+ AIG+ GQNVRLAS+L+GW ++V++ + E A Sbjct: 300 NEKTAVVVVENDQLSLAIGKKGQNVRLASRLTGWSIDVLSESEYNQMKHKETERAFKETN 359 Query: 361 K 361 + Sbjct: 360 Q 360 >UniRef50_B5YEH2 Transcription termination factor NusA n=2 Tax=Dictyoglomus RepID=B5YEH2_DICT6 Length = 364 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 129/344 (37%), Positives = 205/344 (59%), Gaps = 1/344 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 + ++ V+E + EK L + + EAL AL +A KK Y RV+I+ + F Sbjct: 3 LGEDFWVVLEQIITEKKLDKNVVLEALRKALLSAFKKAYGTSKGARVEINFNKQEISIFV 62 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV++V EI+LE A+ LGD +E +IE F RI Q AKQVI+Q ++E Sbjct: 63 VKKVVEKVNDNISEISLEEAKSLKPDAKLGDEIEIEIEPQEFGRIAVQVAKQVIMQSLKE 122 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER ++ ++++ EGE++ G V ++ + N+ + + EAV+ ++ +P E + G R+R Sbjct: 123 AERRILYEKYKAKEGELVNGTVVRIEKGNVYVRFPD-IEAVLPVKEQIPGEEYWIGRRLR 181 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 L VR + + ++RS P L LF +EVPEI E +EI + AR+PG R+K+AV + Sbjct: 182 AYLLEVRKTTKDPLVILSRSHPGFLKRLFELEVPEIREGTVEIVSIAREPGMRSKVAVYS 241 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 + +DP+GACVG +G R+Q + EL GE+IDIVLW +PA+FV +++PA S+ + E Sbjct: 242 HLPEVDPIGACVGYKGVRIQNIINELNGEKIDIVLWSKDPAEFVARSLSPAKPISVEIRE 301 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDL 344 ++H + V + AIG++GQNVRLA +L+ W ++V T + Sbjct: 302 EEHKAIVIVPPDQFSLAIGKDGQNVRLAVKLTSWRIDVRTPEQY 345 >UniRef50_C3RL60 Transcription termination-antitermination factor n=6 Tax=Bacteria RepID=C3RL60_9MOLU Length = 443 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 119/378 (31%), Positives = 216/378 (57%), Gaps = 5/378 (1%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKY-EQEIDVRVQIDRKSGDFDTFR 60 +K+ + + + EK + ++ E L+ ++ A KK Y + +VRV+I+ K+G F F Sbjct: 3 SKKFMDALNLLIEEKGIEKDVFLEMLKESIGKAYKKNYLNPDANVRVEINEKTGKFRLFE 62 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVD++ E++LE A+ + + +GD VE + + R+ KQ+ QK+RE Sbjct: 63 LRTVVDDLDDEDIELSLEEAQAINPNYQIGDVVETEADIEHIGRLAAIQTKQLFRQKIRE 122 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + ++F + + +IITG+V +V +++G A + +P E G ++ Sbjct: 123 TEKETLYNEFADKKDDIITGIVDRVEDKFAIVNIGK-TGAFLASNQQIPGEKLNEGQHLK 181 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V +G + V+R++P + LF +EVPE+ + +EIKA +R+PG R+K+AV T Sbjct: 182 VYVSDVDRGTKGTHIVVSRTEPSFVKRLFELEVPEVYDGTVEIKAVSREPGERSKVAVYT 241 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 +++ IDP+G+CVG +G+RV+ V EL GE IDI+LW +P F+ NA++P+DV + ++E Sbjct: 242 SNENIDPIGSCVGPKGSRVKNVVDELNGEMIDIILWSSDPVVFISNALSPSDVKWVSINE 301 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + H+ + V L+ AIG+ GQN RLA +L+GW++++ +V + + +T Sbjct: 302 ENHSALVVVPDDQLSLAIGKRGQNARLAVRLTGWKIDIKSVSEAVELGLIDLQTVNNTEE 361 Query: 361 KYL---DIDEDFATVLVE 375 +E+FA +++ Sbjct: 362 SSPVDASFEEEFAQEMLD 379 >UniRef50_B2UQQ4 NusA antitermination factor n=2 Tax=Verrucomicrobiaceae RepID=B2UQQ4_AKKM8 Length = 431 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 147/432 (34%), Positives = 240/432 (55%), Gaps = 17/432 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKY---EQEIDVRVQIDRKSGDFD 57 M +I A+++ EK L REKI ALESA +A +K +R +I+ G Sbjct: 1 MTNDIKALIDYYEREKGLSREKILLALESAFLSAYRKMVPGSGSINYLRAEINVDKGKVR 60 Query: 58 TFRRWLVV--DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 F VV +E + +I L A D++ L D + I F RI QTA+Q ++ Sbjct: 61 IFADLEVVPDEEYSDKFNQIPLSLAVKLDKNAVLHDLLPTNITPKGFGRIAVQTARQTML 120 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRP 175 QK+ +AE+ M+ D+F++ G+++TG +++ + +I +DLG E V+ + +P E++ Sbjct: 121 QKLLDAEKEMLYDEFKDRAGDLVTGTIRRFEKGDIFVDLGK-FEGVMTSRERVPNEDYSV 179 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 GDR+R + VR EARG ++ ++RS P ++ LF EV EIG++ +EI AR+ G R K Sbjct: 180 GDRMRFYVVEVRTEARGPEVILSRSHPNLVRRLFESEVVEIGDQTVEIHGIAREAGYRTK 239 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 +AV ++D ++DPVGACVGMRGARV+ + EL E++DI+ W ++P FV A++P + Sbjct: 240 VAVISHDDKVDPVGACVGMRGARVKNIVRELNNEKVDILEWTEDPVTFVREALSPVEPRE 299 Query: 296 IVVDEDKHTMDIAVEAG-NLAQAIGRNGQNVRLASQLSGWELNVMTVDD----------L 344 I VDE+ + + V+ +L++AIGR GQN RL S+L GW++ V D Sbjct: 300 ITVDEEARKIFVIVQDDKDLSKAIGRRGQNARLTSRLMGWDVQVRVFDVQEAEKRQSQAA 359 Query: 345 QAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVE 404 + + AA T ++ L+I E+ A LV G + L L ++ E G+ Sbjct: 360 AEEVMRQCQAAAKTLSEQLEIPEETAMGLVTMGGTDLVALTGFEASDIAESMGIPAEEAA 419 Query: 405 ALRERAKNALAT 416 + ++A++ ++ Sbjct: 420 QILDKARDLISQ 431 >UniRef50_Q2GDP1 N utilization substance protein A n=2 Tax=Neorickettsia RepID=Q2GDP1_NEOSM Length = 537 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 160/529 (30%), Positives = 263/529 (49%), Gaps = 40/529 (7%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N +I+ + +V+ ++ L + +F A+ LA K+ + + V+ID+KSG+ +R Sbjct: 10 NLQIVESINSVAEKEGLSPDTLFRAIGIELAHEIGKRQYGDHRIFVEIDKKSGEILVSKR 69 Query: 62 WLVVD-----------EVTQPTKE-----------------ITLEAARYEDESLN--LGD 91 LVV+ EVT + I L AR + S+ GD Sbjct: 70 LLVVEDSDKARMLEQMEVTTEESDDLPSSFRAEEKVHYDGVIDLSTARLKYPSIEHKAGD 129 Query: 92 YVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNR---- 147 + + + S + I + K + + + R ++ GEI+TG+VKK Sbjct: 130 IITEHLPSFSSGYIIARVMKAKLERLITSLVREKQYHCYKGRVGEIVTGIVKKSIDFKTG 189 Query: 148 -DNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLI 206 +I +D+ E ++ ++ E+FRPG+RV+ V+ V Q+ ++RS + Sbjct: 190 SRSIIVDI-AGVEGLLPYSSLVKGESFRPGERVKCVIQKVEYSVVKPQILLSRSSGSFVA 248 Query: 207 ELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTEL 266 +LF +VPEI + V+EI+ ARD GSR+K+AV ++D+ IDPVGAC+GM G+R+ AV EL Sbjct: 249 QLFSQQVPEIYDRVVEIRKVARDAGSRSKVAVFSSDRNIDPVGACIGMGGSRINAVVNEL 308 Query: 267 GGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVR 326 GE+IDIV + ++ A F+ NA+ P I V+E+ +++ V +++ IGR GQNV Sbjct: 309 HGEKIDIVEYSNDTATFLANALKPIRPVKITVNEETKKIELVVPDESVSLVIGRGGQNVY 368 Query: 327 LASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAY 386 L S L G+ + V++ + K E + F + L+++E A +LV EGFST+EE+A Sbjct: 369 LLSSLLGYRVEVLSDAEFSKKKMEEFISGTARFVEALNVEEVIAQLLVTEGFSTVEEIAD 428 Query: 387 VPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAF 446 L IEG D+ E +R RA + + K ++L L D L Sbjct: 429 CNTSRLAFIEGFDKDIAEEIRSRAVEYVNEQPKRVRALAEKYKANPNMLALSSFDTGLLE 488 Query: 447 KLAARGVCTLEDLAEQGIDDLADIE---GLTDEKAGALIMAARN-ICWF 491 L + G+ LE +AE D+L ++ G LI+ +R + W Sbjct: 489 VLFSSGLTDLEKVAELSCDELREVIGDNGFGVPLLEQLIIRSRKTLGWL 537 >UniRef50_P48514 Transcription elongation protein nusA n=8 Tax=Deinococci RepID=NUSA_THET8 Length = 387 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 223/388 (57%), Gaps = 12/388 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKY----------EQEIDVRVQID 50 MN+E + ++ ++ E+ + E+I EA + AL A K+ + +V V ID Sbjct: 1 MNREFVEAMQHLALERGVSVEEILEAFKEALRKAYIKRQKGYKKEEIDQGKGPEVDVYID 60 Query: 51 RKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTA 110 SG + VV++V P KEI L A D + +GD +E I R+ Q Sbjct: 61 PNSGRIEMVEVRRVVEKVEDPDKEIALAEALQYDPEVQVGDEMEFPINPEELSRMAIQDL 120 Query: 111 KQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVN-RDNISLDLGNNAEAVILREDMLP 169 +Q++ Q+++E+ER + +++++ EG+++TGVV +V+ R N+ ++LG EA + R + +P Sbjct: 121 RQILTQRLKESERNRIYNEYKDKEGQVLTGVVTRVDNRGNVFVELGRG-EAYLPRSEQIP 179 Query: 170 RENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARD 229 E + PG R++ L V A+G L V+R+ ++L L + EVPEI E ++EIKA AR+ Sbjct: 180 TEKYHPGQRIKVYLKKVDKSAKGPSLLVSRAHEKLLEHLLKQEVPEIAEGIVEIKAIARE 239 Query: 230 PGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMA 289 PG R+K+AV +++ +DP+GAC+G +G R+QAVS ELG E++DI+LW +P +F+ NA++ Sbjct: 240 PGRRSKVAVTSHNPNVDPIGACIGHKGQRIQAVSAELGREKVDIILWSKDPKEFIRNALS 299 Query: 290 PADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQ 349 PA V SI +D + + V + AIG GQNVRLAS+L+G++++ + Sbjct: 300 PAQVGSIELDPEAKKARVKVTKDQHSLAIGTGGQNVRLASKLTGYDIHFEEAEISDLDEA 359 Query: 350 AEAHAAIDTFTKYLDIDEDFATVLVEEG 377 A + + E+F + + G Sbjct: 360 LRRAAEEEAEARERKAREEFEKLFRDLG 387 >UniRef50_C1SH20 Transcription termination factor NusA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SH20_9BACT Length = 460 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 144/426 (33%), Positives = 237/426 (55%), Gaps = 10/426 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE+ VV+ + EK + RE + EALE ++ A +K + ++ V +D G + Sbjct: 1 MSKELTKVVDEIGREKGIARELLQEALEESIFAAVARKIGKLLEPDVFVDIDKGTIEILL 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V + V EI ++ A E+ LGD + R AKQ + +K+R+ Sbjct: 61 PKEVCESVDDKWTEIHIDNADEFKENPQLGDVIMVPATLEELGRQAALVAKQKLFEKLRD 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ +V+DQF++ GEI+ GVV K +RDN+ +++G EAV+ + +M+ + F GD VR Sbjct: 121 AEKQVVLDQFQDRIGEIVNGVVLKTDRDNLIINIGK-TEAVLPKREMIGGDFFNRGDYVR 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +L +R QL ++R+ PE + +LF E+PE+ E +I++KA +R+PG RAK+AV T Sbjct: 180 ALLLDIRIIKGWPQLILSRTHPEFMKKLFETEIPEVFEGIIDVKAVSREPGDRAKVAVYT 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 + IDPVGAC+G++G R+ A+S EL GE+ID++ W + +FV NA++PA+V + E Sbjct: 240 TNSSIDPVGACIGLKGVRINAISNELRGEKIDVIEWSPDSIKFVCNAISPAEVVLTNIFE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 D+ T++I V L+ AIG+ GQNVRLA++L+ W L+V+ + + Sbjct: 300 DEETIEIVVPDDQLSLAIGKKGQNVRLAAKLTEWRLDVLKESEYAEIRKERMQDQEQDLK 359 Query: 361 K---------YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 411 + +D D L+E G+ +E+L+ KE+ + +E +L A Sbjct: 360 EFYEMYNLDNLEGLDADTMHSLIEAGYDDIEKLSNADFKEVAQELECEEEKAVSLINMAL 419 Query: 412 NALATI 417 + LA Sbjct: 420 DYLANK 425 >UniRef50_C1A8N6 Transcription elongation protein NusA n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8N6_GEMAT Length = 438 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 154/422 (36%), Positives = 238/422 (56%), Gaps = 11/422 (2%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 + +IL + +SN K + RE++ L+ + A KK+ + V+ID G+ Sbjct: 4 SADILTALRELSNLKQITREELHGLLQDGIHAALAKKHGANVQAEVEIDEARGEIRIVLL 63 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VVDEVT ++E+T+E AR+ D +GD +E ++ + F R Q AKQ I+Q+VRE Sbjct: 64 KTVVDEVTDESREVTVEEARFMDPEFQVGDVMEIPVDFMEFGRTAVQAAKQRIIQRVREG 123 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGN--NAEAVILREDMLPRENFRPGDRV 179 ER + D+F G++++G V+++ R + + L AEA+I + RE++ G+ V Sbjct: 124 ERTRIRDEFAGRVGDLLSGEVQQIERGKLVVMLNKFREAEAIIPYREQNHREHYHQGEPV 183 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R VL V +G +L ++RS + LF++EVPEI + ++EIKAAAR+ GSR KIAV Sbjct: 184 RAVLKRVEDTPKGPRLILSRSDALFVQALFKLEVPEIQQGIVEIKAAAREVGSRTKIAVT 243 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 + D+ +DPVGACVG++GARVQAV ELGGERIDIV W +P +F A+APA VA + D Sbjct: 244 SRDEAVDPVGACVGLKGARVQAVVNELGGERIDIVPWSPDPERFAKLALAPARVARVFSD 303 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKH---------QA 350 T+ V+ L+ AIGRNGQNVRLAS+L+GW++++ + + K Sbjct: 304 AASRTIQAVVDEDQLSLAIGRNGQNVRLASELTGWKIDLYSSREWLEKGGEAPLFAPLPE 363 Query: 351 EAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 410 E A + ++ VL E G+ TL ++ + +LL + G+ + + Sbjct: 364 ETEEADVPLNEIEGLETATVAVLAEAGYRTLNDILDLDRDDLLRLPGIAPEEADRIMAII 423 Query: 411 KN 412 Sbjct: 424 DE 425 >UniRef50_UPI0001C31DB6 NusA antitermination factor n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31DB6 Length = 503 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 135/435 (31%), Positives = 224/435 (51%), Gaps = 31/435 (7%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KEIL V ++ EK + EK+ ALE AL +A KK+ +V++DR+ GDF + Sbjct: 1 MSKEILDAVRGLAAEKNISSEKLMVALEDALLSAYKKQPGAAPYAQVEMDRELGDFTVWE 60 Query: 61 RWLVVDEVTQ----PTKEITLEAARYEDES-----------------LNLGDYVE-DQIE 98 + +++ +EI D D +E + Sbjct: 61 LK-IPEDLEDQLITEQEEIIAAEFSGVDPETGEARELPEPELDFEKLAEYEDQIERVDVT 119 Query: 99 SVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNA 158 F RI QTAKQVI+Q++REAER M+ +++R+ GE+ITG+V++ + + L Sbjct: 120 PEDFGRIAAQTAKQVILQRIREAERDMMFEEYRDRVGELITGIVQQSDSRYTLVQLRERV 179 Query: 159 EAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE 218 EA++ + + + E + R++ V+ V +G + V+R PE++ LF +EVPEI + Sbjct: 180 EALLPKSEQVDGERYDHSQRIKAVIKDVSASTKGPSIIVSRRDPELIKALFELEVPEIAD 239 Query: 219 EVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDD 278 ++EI AR+PG R+KIAV ++ +DPVGACVG RG+RV+ V +EL GE+IDI+ ++D Sbjct: 240 GLVEITNVAREPGYRSKIAVVSHADGVDPVGACVGPRGSRVRMVVSELRGEKIDIIPYND 299 Query: 279 NPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV 338 PA+FV A++PA V ++VD+D + V L+ AIGR GQN RLA++L+GW +++ Sbjct: 300 EPARFVAKALSPARVREVLVDDDGKQATVIVPDDQLSLAIGREGQNARLAARLTGWRIDI 359 Query: 339 MTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEE--------GFSTLEELAYVPMK 390 + + ++ + + G T + L+ + Sbjct: 360 RSETEFASEEAEGGYEEEEVQGGRCAAITLNGRRCPNAALPGSRYCGLETHQALSEIDSD 419 Query: 391 ELLEIEGLDEPTVEA 405 E+ + G + Sbjct: 420 EVAALSGGGTAVADD 434 >UniRef50_D1PLN7 Transcription termination factor NusA n=2 Tax=Clostridiales RepID=D1PLN7_9FIRM Length = 357 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 121/353 (34%), Positives = 203/353 (57%), Gaps = 4/353 (1%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYE-QEIDVRVQIDRKSGDFDTFR 60 N E + A+ E+ LP + + E +++A+ A KK YE ++ +V V ID + G F Sbjct: 5 NNEFFDALAALEKERGLPEDYLIEKIKAAIVIAVKKDYEVEDDNVVVDIDPEIGAFRASL 64 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V+EV P +++LE A+ +S +G + Q+++ F RI QTAK VI Q +RE Sbjct: 65 LRDIVEEVENPHTQVSLEEAQKVRKSYKVGQRMVTQLKTKEFGRIAAQTAKHVIRQGLRE 124 Query: 121 AERAMVVDQFREHEGEIITGVVKKVN--RDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 ER + + + E+IT V ++ R N+ LDLG AV+ R + +P E F G+ Sbjct: 125 GERNLQCSEMQSRAHELITATVVSIDPERGNVVLDLGKGGSAVLPRNEQVPGETFHEGET 184 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 V+ + V RG ++ ++R+ P ++ +F +EVPEI + +EIKA AR+ G+R K+AV Sbjct: 185 VQVYVVDVLATDRGPRVTISRTHPGLVKRMFELEVPEIYDGTVEIKAIAREAGARTKLAV 244 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 + + +DPVGAC+G RGARV+ + ELGGE+ID++ W ++ +F+ A++PA V + + Sbjct: 245 WSKNPDVDPVGACIGARGARVEKIVQELGGEKIDVIRWSEDITEFISAALSPAKVVKVEL 304 Query: 299 DE-DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA 350 + + + V L+ AIG GQNVRL + L+G+ +++ + + Sbjct: 305 LPGETKSCRVTVPDHQLSLAIGNKGQNVRLCAHLTGYNIDIRPESGYYGEDEE 357 >UniRef50_B2S4C9 N utilization substance protein A n=4 Tax=Treponema RepID=B2S4C9_TREPS Length = 485 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 133/468 (28%), Positives = 232/468 (49%), Gaps = 25/468 (5%) Query: 9 VEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEV 68 + + EK L + F+ +E L A K ++ + + V + + R VV+EV Sbjct: 9 IRKYAQEKGLDEDFAFKIVEQTLKAAYKTTFKTDENAVVTFGEE--RVCIYARKRVVEEV 66 Query: 69 TQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVD 128 E+ L A D + +L V ++ES F R + Q A Q I + RE ++ + Sbjct: 67 YDRVSEVDLSTALELDPTTSLDSEVLVELESEDFKRGSVQAAVQRITELSREIQKDALYA 126 Query: 129 QFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRP 188 +++ EGEII G ++ ++I +DLG E ++ + LP++++R DR++ ++ VR Sbjct: 127 EYKSKEGEIIVGYYQRARNEHIYVDLGK-VEGLMPKSHQLPQDDYRQNDRIKSLVREVRK 185 Query: 189 EARGA--QLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRID 246 + + QL ++R+ + EL +EVPEI + ++E+ R+PG R KIAV + +D Sbjct: 186 HPKSSVVQLILSRTDSAFVKELLAVEVPEIYDGIVEVAKIVREPGYRTKIAVTSRRDDVD 245 Query: 247 PVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV-DEDKHTM 305 PVGACVG RG R++ V EL E+ID++ + +P F+ NA++PA+V ++VV DE+K + Sbjct: 246 PVGACVGPRGIRIRMVIKELNDEKIDVLEYSPDPVIFIKNALSPAEVLNVVVLDEEKRSA 305 Query: 306 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKH------------QAEAH 353 V L+ AIG+ G NVRLA++L W ++V T + + Sbjct: 306 LAIVAESQLSIAIGKQGLNVRLANRLVDWNIDVKTESQFEEMDVYTDTRRAAENLFDNDY 365 Query: 354 AAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA 413 F+ Y+ + +L + G ++ L + + L +EG+DE V+ L + Sbjct: 366 QEESEFSSYVGFTPELIKILQDNGIQDVQTLVDLGEEGLRALEGMDEAHVQELLAAIEEN 425 Query: 414 LATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAE 461 + + +E S+ + G D D A + GV D++E Sbjct: 426 FEVVEEGEEASVTSSPGT-------GGDEDQALQCPECGVRITTDMSE 466 >UniRef50_D1KAN2 Transcription elongation factor n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KAN2_9GAMM Length = 390 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 198/397 (49%), Positives = 277/397 (69%), Gaps = 8/397 (2%) Query: 97 IESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGN 156 +E+ F RI Q KQVI+QKVREAER ++VD + + GE+I VK+V+R N+ +D+G Sbjct: 1 METEEFGRIAAQIFKQVIIQKVREAEREVIVDDYTKRVGEVIIVTVKRVDRGNVYVDMG- 59 Query: 157 NAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEI 216 + +I + D++P E+ R DR+R + V+ RGAQ+F++R+ PEM+I+LF +EVPEI Sbjct: 60 GVDGMISKFDLIPNESTRKNDRLRAYIKDVKSTPRGAQIFLSRTAPEMMIQLFEMEVPEI 119 Query: 217 GEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLW 276 E VIEI ARDPG R+K+AVK+ DKR+DP+G+C+GMRG+RVQAVS EL GER+DI+LW Sbjct: 120 SEGVIEIMGGARDPGLRSKLAVKSKDKRLDPIGSCIGMRGSRVQAVSNELNGERVDIILW 179 Query: 277 DDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWEL 336 D++PAQFVINAMAPA+V+SIVVDEDK++MDIAVE LA AIGR GQN++LAS+L+GW+L Sbjct: 180 DEDPAQFVINAMAPAEVSSIVVDEDKNSMDIAVEDDQLALAIGRGGQNIKLASRLTGWKL 239 Query: 337 NVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIE 396 NVM++++ + K E + L +D + A VL+EEGF +++E+A L IE Sbjct: 240 NVMSINESEDKQAEENQKVSGKLAEQLGVDSEVAGVLIEEGFGSIDEVADADADALESIE 299 Query: 397 GLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTL 456 D VE L+ERA +A A LGD + ++ L+ +EG+D DL L + T+ Sbjct: 300 EFDVSMVEELQERASDAQLVQA------LGDAESSEVLMGVEGMDEDLVQALIEAEIATV 353 Query: 457 EDLAEQGIDDLADIEGLTDEKAGALIMAAR-NICWFG 492 +DLAE ID+L DI+ + EKA ++IM AR N WF Sbjct: 354 DDLAELSIDELLDIQEMDKEKASSMIMTARENEGWFD 390 >UniRef50_C1TMK5 Transcription termination factor NusA n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMK5_9BACT Length = 366 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 214/363 (58%), Gaps = 4/363 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 + + + + ++ E+ L + I ++E+ALA+A KK E+ ++ V+ID ++GD Sbjct: 3 LGSDFIRALMQLTEERNLSQSIILGSIEAALASAYKKYKEKNLEPEVKIDGETGDISIME 62 Query: 61 RWLVVDEVTQPTKEITLEAARYED-ESLNLGDYVEDQIE--SVTFDRITTQTAKQVIVQK 117 VVDEV E+T E A L GD V+ ++E +F RI QTA+QVI+Q+ Sbjct: 63 IRRVVDEVKNSDAELTSEEAAALGFPGLVEGDVVKTEVEIAPESFGRIAAQTARQVIIQR 122 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGD 177 +++AER ++ ++F E G+++ GVV K D I + + EA++ RE+ + E + G Sbjct: 123 LKDAEREIIFNEFSERVGDMVNGVVFKAENDQILVRISERTEAMLPREERINGETYELGS 182 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 R++ L VR RG ++ V+R+ P +L L +E+PEI + V+EI R+ G+RAK+A Sbjct: 183 RMKFYLLDVRQTTRGPRIVVSRTHPGLLRRLMELEIPEIRDGVVEIHGIVREAGARAKVA 242 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V T D +DPVGACVG G+R++ +S EL GE+ID+V+W D+P Q++ N ++PA V + Sbjct: 243 VTTLDPNVDPVGACVGNGGSRIKTISNELNGEKIDVVIWSDDPLQYIRNTLSPAKVVRVE 302 Query: 298 -VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356 + E + + + L+ AIG+ GQNVRLA++L+GW++++ ++ + Sbjct: 303 PILEQEKSAKVFARPDQLSLAIGKAGQNVRLAARLTGWKVDINPLEAPEKDSMPTLQDLF 362 Query: 357 DTF 359 + Sbjct: 363 EDI 365 >UniRef50_A8F3W1 NusA antitermination factor n=12 Tax=Thermotogaceae RepID=A8F3W1_THELT Length = 344 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 120/342 (35%), Positives = 208/342 (60%), Gaps = 2/342 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN +L ++ + EK + +++I E LE AL +A KK + +V V+IDR +GD F+ Sbjct: 1 MNLGLLDALDQLEEEKGISKDEIIEILEKALVSAYKKNFGTAKNVDVKIDRMTGDIQLFQ 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + VV+EV P ++++E AR D G + +I F RI QTAKQV++Q++RE Sbjct: 61 VFDVVEEVEDPLTQMSVEEARKADPLAESGKKIFKKISVKNFGRIAAQTAKQVLIQRIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + + G +IT V +V D + +G E + + + + E+ G+ ++ Sbjct: 121 LEKERQYEHYSTLAGSVITVEVIRVTSDWADIRVGK-IETRLPKREWISGESISAGELIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + SV + +G ++ V+R+ PE + L ++E+PEI ++++IKA R+PG R K+AV + Sbjct: 180 VYVQSVVKDKKGPKIMVSRAVPEFVAGLLKLEIPEIENDIVQIKAIVREPGVRTKVAVVS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 + ++DPVGAC+G G+R+ A+ EL GE++DI W D+P Q ++NA+APA V S+ + + Sbjct: 240 TNPQVDPVGACIGEGGSRISAILRELKGEKVDIFRWTDDPRQLIVNALAPASVTSVEILD 299 Query: 301 -DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 ++ + + V L+ AIG+ GQN RLA++L+GW++++ V Sbjct: 300 FERKAVRVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPV 341 >UniRef50_B2GBN4 Transcription termination-antitermination factor NusA n=10 Tax=Lactobacillus RepID=B2GBN4_LACF3 Length = 408 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 132/388 (34%), Positives = 225/388 (57%), Gaps = 24/388 (6%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKY-EQEIDVRVQIDRKSGDFDTFRRW 62 E+L ++ + EK + +E I EAL+ ALA A +K Y + +V V+I ++G+F + Sbjct: 9 ELLDAMDILEKEKGIKKEVIIEALKDALANAYQKNYEDNAANVEVEISDRTGEFKVYAAK 68 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 VV+EVT +EI+L A + LGD ++++ F R+ QTAK V++QK+R+ E Sbjct: 69 TVVEEVTNDVEEISLADALRVNRGYELGDIFKEEVTPRNFGRLAAQTAKSVVLQKLRDEE 128 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 R ++ D++ + + +++ G V + + I ++LG+ EA + + D +P E++R DR++ Sbjct: 129 RNIIFDKYNKLKDDLVEGEVSREDERYIYVNLGDGVEAAMNKHDQMPNEHYRVHDRIQVY 188 Query: 183 LYSVRPEA--RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V ++ RG +FV+R+ P++L LF EVPEI + ++E+K R+ G RAK+AV + Sbjct: 189 VTRVNDKSGARGPLVFVSRTSPDLLKRLFEKEVPEIQQGIVEVKGIVREAGDRAKVAVFS 248 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 D+ +DPVG CVG RG RVQA+ +LGGE IDIV +++ P +F+ NA+ PA+V ++ DE Sbjct: 249 RDENVDPVGTCVGPRGTRVQAIVNQLGGENIDIVKYEEAPEEFIRNALNPAEVEGVLFDE 308 Query: 301 DK---------------------HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 + + V L+ AIG+ GQNVRLA+QL+G+++++ Sbjct: 309 NNGEVDEPASVDENGREHEERIHRGCTVIVPDDQLSLAIGKRGQNVRLAAQLTGYKIDIK 368 Query: 340 TVDDLQAKHQAEAHAAIDTFTKYLDIDE 367 + A +A+ A + + E Sbjct: 369 SSSQAAALEEAQPEPAAEVVEQPTQAPE 396 >UniRef50_B1GZN5 Transcription antitermination factor NusA n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZN5_UNCTG Length = 418 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 138/414 (33%), Positives = 246/414 (59%), Gaps = 2/414 (0%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+L +E + +K + +E I +E+AL +A KK + ++V +++ + G+ + Sbjct: 6 ELLIALEQIEKDKKIKKEDILVVIENALVSAYKKHVGKNVNVEAKVNPELGEMTASVVKV 65 Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 VV +V P EI ++ A+ D+S+ +G V +++ F RI QTAKQVIVQK+RE+ER Sbjct: 66 VVKDVVNPLLEICVQDAKKFDQSVEIGTEVRIPLDTRDFSRIAAQTAKQVIVQKIRESER 125 Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 + D+ +E G+I G + ++ N+ +DLG EA++ + + +E F G ++ V+ Sbjct: 126 DSLFDEMKEKIGQIANGAIYRITNRNLIVDLGK-TEAILPSSEQVFKEKFSVGQYIKAVI 184 Query: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 V +G+ + ++R+ E++ LF +EVPEI E+++EI R+PG R KI V +++ Sbjct: 185 IKVEKSVKGSGVVLSRTSIELVKRLFELEVPEIYEKIVEIVNVVREPGVRTKITVLSHNP 244 Query: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDK 302 ++DPVGACVG++GARV+ + EL GERID+V + +PA+++ +AM+PA + S+ + E++ Sbjct: 245 KVDPVGACVGVKGARVKPIIDELRGERIDLVSYSVDPAKYIASAMSPAKIVSVTTISEEE 304 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKY 362 ++ V L AIG+NG NVRLA++L+GW ++V + + + + F K Sbjct: 305 KKAEVLVTDDMLFLAIGKNGHNVRLAAKLTGWHIDVKSEGQKKQEGNERIEKQAEVFEKL 364 Query: 363 LDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 416 E +LV+ G + +E+L+ + + L+ + G+ T E + E AKN++ Sbjct: 365 EGFSERIIKMLVKAGITDVEKLSLLTTEYLITLPGIGHKTAEKIIEVAKNSIRK 418 >UniRef50_C2ES49 Transcription termination factor NusA n=1 Tax=Lactobacillus vaginalis ATCC 49540 RepID=C2ES49_9LACO Length = 410 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 125/401 (31%), Positives = 212/401 (52%), Gaps = 47/401 (11%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N E++A ++ + EK + +E + EALE AL A K+ Y E +V V D +G+ + Sbjct: 7 NTEMIAALDYLEKEKGIKKEIVIEALEQALELAYKQNYG-EKNVEVDFDGVTGNIKVYAV 65 Query: 62 WLVVDEV----TQPTKEITLEAARYE--DESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 + D + ++L AR + ++GD + +++ F RI QTAKQV++ Sbjct: 66 KTITDNEDLVEEDDNEYMSLADARKLPHGQGYDVGDEIREEVTPRDFGRIAAQTAKQVVM 125 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRP 175 Q++RE ER ++ ++++ +E EIITG V + ++ +DLG+ E + D +P E++ Sbjct: 126 QRLREEERKIIYNKYKTYENEIITGEVSREDKRFTWVDLGDGVEGAMGYRDKMPNEHYHI 185 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 DR++ + V + G Q+FV+R+ PE+L LF EVPEI + + I+ AR+ G RAK Sbjct: 186 HDRIQVYVSKVNDDRHGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREAGDRAK 245 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 +AV +ND +DPVG CVG RG+RVQA+ EL GE +DIV + +PAQF+ NA+ PA+V Sbjct: 246 VAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKDPAQFIANALNPAEVLD 305 Query: 296 IVVDE----------------------------------------DKHTMDIAVEAGNLA 315 ++ +E ++ + + V L+ Sbjct: 306 VIFNEPEAPVTEEQPEENSTDDSVTETSDTSTEAESTEEEPVATTEERSCTVVVPDSQLS 365 Query: 316 QAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356 AIG+ GQN RLA++L+ +++++ +++ Sbjct: 366 LAIGKRGQNARLAARLTKYKIDIKPASEMEDNTDTLEEETD 406 >UniRef50_A8SMZ8 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMZ8_9FIRM Length = 378 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 224/347 (64%), Gaps = 1/347 (0%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 + L ++ + EK + +E IF++LE AL + +K + + +V++ I+R +G + F Sbjct: 13 DFLRALDEIEREKGVSKEIIFDSLEKALLKSYEKNFGEYENVKININRTTGKVELFAIKT 72 Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 VV+ V EI+L+ A+ +LGD V +++++ F R+ QTA+ +++QK+++AER Sbjct: 73 VVEVVEDNITEISLDDAKAISTKYSLGDEVSIKLKTMDFGRVAAQTARNIVIQKIKDAER 132 Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183 ++ + F++ E E+I+G +++++R+N+ ++LG EA++ + + E +R G+R++ + Sbjct: 133 EVIYNDFQDKERELISGQIQRIDRNNLFINLGK-LEAIVTPPEQIKSEVYRVGERLKFYV 191 Query: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243 V+ +GAQ+ ++RS +++LF +EVPEI + +EI++ AR+PGSR KIAV + + Sbjct: 192 KEVKNTPKGAQVLLSRSDVNFVLKLFELEVPEILDGTVEIQSIAREPGSRTKIAVFSKND 251 Query: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303 +DPVGACVG + +RV ++ EL GE+IDI+++ N +++ N+++P++V ++ +E ++ Sbjct: 252 DVDPVGACVGYKRSRVSSIIKELKGEKIDIIVYSKNVKEYLSNSLSPSEVIAVFTNESEN 311 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA 350 I V L+ AIG+ GQN RLA++L+ W +++ ++ + + Sbjct: 312 RARIIVPDSQLSLAIGKEGQNARLAAKLTNWRIDIKGLEKYKEDIEN 358 >UniRef50_Q3Z7U1 N utilization substance protein A n=5 Tax=Dehalococcoides RepID=Q3Z7U1_DEHE1 Length = 491 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 127/371 (34%), Positives = 213/371 (57%), Gaps = 3/371 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKK-YEQEIDVRVQIDRKSGDFDTF 59 M + L + +S EK LP+E + +ESAL +A +K+ + ++ V+ID+ +G Sbjct: 1 MKSDFLLAITQLSAEKNLPKEVVLATVESALVSAYRKESFAPNQNIAVKIDQLTGKVKVM 60 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 LVV++VT +E+ L A+ +GD + + RI QTAKQVI+Q++ Sbjct: 61 AEKLVVEKVTDSRQEMRLLEAKRLKADAKIGDLMMVEDTPADAGRIAAQTAKQVILQRLH 120 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 EAE + D++ G+ + GVV+++ I++D+G EA++ + E +R G R+ Sbjct: 121 EAENTAIFDEYASKAGDTLVGVVQRIEPKQITVDIGR-VEAIMPASEQAYGERYRAGQRI 179 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 + + V A+G + V+RS P ++ LF +EVPE+ +++EIKA AR+ GSR+K+AV Sbjct: 180 KVYVVDVAKTAKGPAVIVSRSHPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVG 239 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 IDPVG CVG+RG R+Q + +EL GE+ID+V WD A F+ N+++PA V ++++ Sbjct: 240 ALQPGIDPVGCCVGLRGIRIQNIVSELNGEKIDVVAWDSEIANFIANSLSPAQVTKVILN 299 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTF 359 E + + + + L+ IG+ GQNVRLA +L+GW +++ + D + + E A Sbjct: 300 EAEKSAIVVIPDRQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEEVERAEET-ARKQGE 358 Query: 360 TKYLDIDEDFA 370 T+ I E Sbjct: 359 TEKPAITEKVI 369 >UniRef50_C7RGN8 NusA antitermination factor n=7 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RGN8_ANAPD Length = 433 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 122/367 (33%), Positives = 223/367 (60%), Gaps = 1/367 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN + + ++ + EK L + I +AL+ AL + +K Y+ E +V V ID ++G + F Sbjct: 1 MNNDFMLALDELCKEKNLDKATILDALQKALIKSYQKNYDNEENVDVIIDEETGQIEVFA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVDEV EI+L+ A E+ S +LGD ++ F R+ QTA+ +++QK+R+ Sbjct: 61 LKEVVDEVDDTITEISLKDALEENSSYHLGDIARIKLTPKNFGRVAAQTARNIVIQKIRD 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 A+R + ++ E E+ITG +++ ++ N+ ++L + E V+ ++ +P E + +++ Sbjct: 121 AQRDSLYGEYIERANEMITGTIQRQDKYNVYVNL-DKIEGVVPIKEQVPTEEYPANAKMK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 ++ VR ++ Q+ ++RS +++ LF +EVPEI + +IEI + AR+ GSR K+AV + Sbjct: 180 FLIKEVRNSSKEPQIVLSRSSQDLITRLFELEVPEITDGIIEIYSLAREAGSRTKMAVFS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ND+ ID VGAC+G +G RV ++ EL GE+IDI+ +D + F+ NA++PAD+ ++V+E Sbjct: 240 NDEGIDAVGACIGFKGIRVNSIVEELQGEKIDIINFDKDIKVFISNALSPADIIEVLVNE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + V + L+ AIG+ GQN RLA++L+GW++++ + ++ ++ Q E + Sbjct: 300 KSKKSLVVVSSDQLSLAIGKEGQNARLAARLTGWKIDIKSSEEYESLSQEEIDEILGLNE 359 Query: 361 KYLDIDE 367 + E Sbjct: 360 IDEEASE 366 >UniRef50_D2R7W7 NusA antitermination factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7W7_9PLAN Length = 404 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 139/423 (32%), Positives = 236/423 (55%), Gaps = 37/423 (8%) Query: 1 MN-KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTF 59 MN ++L +V+++ EK + ++ +F+A+E+AL +A KK Y D+ + IDR +G Sbjct: 1 MNPADMLRIVDSLHREKNIDKDVVFQAIEAALVSAAKKHYGDAADITINIDRNTGALS-- 58 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 + + D RI QTAKQVI+QK+R Sbjct: 59 ----------------GIADGQALDPE-------------EISGRIGAQTAKQVIIQKIR 89 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 EAER ++ ++ + G++I GVV + + LG EA++ R + +P E P +RV Sbjct: 90 EAERDSLLGEYGDQIGQLINGVVTRSEGAATIVSLG-TIEAILPRSEQIPGETHHPNERV 148 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R +++ V+P+ ++ ++R++P+ + LF E+PEI + VI + A AR+P R+K+AV Sbjct: 149 RAIVFEVKPQGSRVKVVLSRTRPQFVQRLFEQEIPEIADGVISVNAIAREPAHRSKVAVS 208 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 + D+R+D VGACVG+RG R++ + EL GERIDIV W D+ + ++ PA+V +++ Sbjct: 209 STDQRVDCVGACVGVRGNRIKNIVDELSGERIDIVRWSDDAETLIRASLQPAEVDQVLLC 268 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTF 359 + + V L+ AIGR GQNVRLAS+L GW++ +MT D+L+ + A+ F Sbjct: 269 DMIGRAIVLVREDQLSLAIGRKGQNVRLASKLCGWDIEIMTNDELEQ----QIDRAVGGF 324 Query: 360 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQ 419 +K + E+ A LVE+G+ + ++L+ + L+E+ GL E VE + +A+ + Sbjct: 325 SKIEGVTEELAQRLVEQGYLSYDDLSVIEPDALMEMGGLTEEQVEEIVNQAETLATDAER 384 Query: 420 AQE 422 A + Sbjct: 385 AAD 387 >UniRef50_B0B9K5 N utilization substance protein A n=16 Tax=Chlamydiales RepID=B0B9K5_CHLT2 Length = 434 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 131/434 (30%), Positives = 219/434 (50%), Gaps = 8/434 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNK+++A+ + + EK + R I A+ESAL A KK + +V V I+ ++GD + F Sbjct: 1 MNKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFC 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V++ P+KEI L+ AR D +G Y++ S F RI A+Q+I QK+R Sbjct: 61 EKQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRH 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER ++ +++R + EII+GVVK R + E ++ E + GD++ Sbjct: 121 AERDVIYEEYRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIY 180 Query: 181 GVLYSV-RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 +LY V E GA++ ++RS PE + +LF EVPE+ E +EI AR+ G R K+AV+ Sbjct: 181 ALLYEVQESENGGAEVILSRSHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVR 240 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 ++D + D VGA VGMRG+R++ + EL E+ID+V + + + N + P ++ I + Sbjct: 241 SSDPQTDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAIL 300 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA-------KHQAEA 352 ED + I V+ + A IG+ G N RL SQ+ G+EL V + + + Sbjct: 301 EDDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRMSEYNKLLEIQRLQLAEFE 360 Query: 353 HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 412 +D + I+ L G+ T+ ++ EL + G+ + E+ Sbjct: 361 DPRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVSK 420 Query: 413 ALATIAQAQEESLG 426 + + Sbjct: 421 YGEGKVDEKPQVED 434 >UniRef50_D2QL25 NusA antitermination factor n=14 Tax=Bacteria RepID=D2QL25_9SPHI Length = 414 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 118/414 (28%), Positives = 223/414 (53%), Gaps = 8/414 (1%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 ++ + K + R + LE T +KKY + + V I+ +SGD + +R + Sbjct: 6 LIESFADFARSKNIDRPTMIAILEDVFRTMIRKKYGTDENFDVIINAESGDLEMWRTREI 65 Query: 65 VDEVTQPT---KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VD+ ++ +I L AR + +G+ V ++++ F R QTA+Q ++QK+++ Sbjct: 66 VDDNSEDIWDYDKIPLAEARKIQDDFEVGEQVAEEVKLDDFGRRVVQTARQTLIQKIKDM 125 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E+ ++ ++++ G+++T V ++ + I L G + E + R + + ++ +R G+ V+ Sbjct: 126 EKELLYQKYKDQVGDLVTAEVYQLLKHEIILVDGESNELSLPRTEQISKDRYRKGEPVKA 185 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 V+ V ++ ++R+ P L LF IEVPEI + +I I+ R+PG RAK+AV++ Sbjct: 186 VISRVDMLNGTPKIVLSRTSPVFLERLFEIEVPEIYDGLISIRKIVREPGERAKVAVESY 245 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D RIDPVGACVGM+G+R+ + ELG E ID++ + +N + A++PA ++S+ +D + Sbjct: 246 DDRIDPVGACVGMKGSRIHGIVRELGNENIDVINYTENLELLISRALSPAKISSMQIDRE 305 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 + + ++ ++ AIG+ GQN++LA +L E++V ++ E +D Sbjct: 306 TKRVSVFLKPDQVSLAIGKGGQNIKLAGRLVDMEIDVFRDNE-----GQEDDEDVDLMEF 360 Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALA 415 +IDE L + G T + + + +EL+ L+E TVE + K Sbjct: 361 SDEIDEWMIQELRKVGLDTAKSVLALNKEELVRRTDLEEDTVEEILNILKQEFE 414 >UniRef50_A3CQ21 N utilization substance protein A, putative n=42 Tax=Streptococcus RepID=A3CQ21_STRSV Length = 420 Score = 366 bits (939), Expect = 1e-99, Method: Composition-based stats. Identities = 129/421 (30%), Positives = 228/421 (54%), Gaps = 19/421 (4%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+KE+L + +K + +E I +A+ +L +A +++Y Q ++ D KSGDF + Sbjct: 3 MSKEMLEAFRILEEDKGIKKEDIIDAVTESLRSAYRRRYGQADSAAIEFDEKSGDFRVYT 62 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VVDEV EI+L+ A + LGD ++ + F R+ Q+AKQ I++K+R+ Sbjct: 63 VREVVDEVFDSRLEISLKDALAISSAYELGDKIKFEEAPAEFGRVAAQSAKQTIMEKMRK 122 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 RA+ + ++EHE EI++G V++ + I ++LG + EA + ++D +P E F DR+ Sbjct: 123 QTRAITYNTYKEHENEIMSGTVERFDNRFIYVNLG-SIEAQLSKQDQIPGEVFASHDRIE 181 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +Y V RG +FV+RS PEM+ L E+PE+ + +EI + +R+ G R K+AV++ Sbjct: 182 VFVYKVEDNPRGVNVFVSRSHPEMIKRLMEQEIPEVYDGTVEIMSVSREAGDRTKVAVRS 241 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGG--------------ERIDIVLWDDNPAQFVIN 286 ++ +D +G VG GA ++ ++++ E ID++ W +PA+F+ N Sbjct: 242 HNPNVDAIGTIVGRGGANIKKITSKFHPAKYDPKSGRMVPTEENIDVIEWVADPAEFIYN 301 Query: 287 AMAPADVASIVVDEDK-HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ 345 A+APA+V ++ +E+ + V L+ AIGR GQNVRLA+ L+G+ +++ + + + Sbjct: 302 AIAPAEVDQVIFNEEDNKRALVVVPDNKLSLAIGRRGQNVRLAAHLTGFRIDIKSATEFE 361 Query: 346 AKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEA 405 A+ + +I D A + E + + + +LE GL E E Sbjct: 362 E--MEAANELGGFAQEAEEILADAAILETEVSGAEATDFDAAAEETVLETAGL-ESEAEE 418 Query: 406 L 406 L Sbjct: 419 L 419 >UniRef50_D1BJ68 Transcription termination factor NusA n=5 Tax=Actinomycetales RepID=D1BJ68_SANKS Length = 365 Score = 365 bits (937), Expect = 3e-99, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 203/365 (55%), Gaps = 8/365 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+ ++ + + + E+ + + + A+E ALA A ++ + RV+IDRKSG + Sbjct: 1 MDIDM-SALRLLEREREISLDVLVSAIEQALALAYQRTPGAQRTARVEIDRKSGHVTVWA 59 Query: 61 RWLV-VDEVTQPTKEITLEAARYEDESLNLGDYV-----EDQIESVTFDRITTQTAKQVI 114 R + +E +P +A ED+ V E F RI T TA+QVI Sbjct: 60 REDIETEEPVEPRYSDGDDADGTEDDEAPTTRVVRTLGPEFDDTPTDFGRIATSTARQVI 119 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 174 +Q++R+AE V+ QFR+ EGE+++G++++ + L EAV+ + +P E + Sbjct: 120 MQRLRDAEDDQVLGQFRDKEGELVSGIIQQGRDPRVVLVDVGGTEAVLGAHEQVPTEKYT 179 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 G+R+R + V +G Q+ ++R+ P ++ +LF +EVPE+ + +EI A AR+ G R Sbjct: 180 HGERLRSYVLDVSRGMKGPQISLSRTHPNLVRKLFEMEVPEVADGSVEIVAIAREAGHRT 239 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 K+AV+ ++ GAC+G G+RV+AV EL E+IDIV W+D+PA FV +A++PA V Sbjct: 240 KMAVRARVSGLNAKGACIGPMGSRVRAVMAELHDEKIDIVDWNDDPAAFVASALSPATVI 299 Query: 295 SI-VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAH 353 S+ VVD D + V L+ AIG+ GQN RLA++L+GW +++ + + Sbjct: 300 SVTVVDADARAARVIVPDFQLSLAIGKEGQNARLAAKLTGWRIDIRSDGGGAEGSDDAST 359 Query: 354 AAIDT 358 + D Sbjct: 360 TSSDP 364 >UniRef50_Q1AW56 NusA antitermination factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AW56_RUBXD Length = 381 Score = 361 bits (926), Expect = 5e-98, Method: Composition-based stats. Identities = 111/346 (32%), Positives = 185/346 (53%), Gaps = 35/346 (10%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN +L+ + + EK +P E + LE +L A +++ V +DR++GD + Sbjct: 1 MNTALLSALHEIETEKGIPFETVKRVLEESLLAAYREREGAVEGAEVVLDRETGDLRVMK 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFD--RITTQTAKQVIVQKV 118 + I FD RI +Q +Q++ Sbjct: 61 D--------------------------------GEDITPEDFDFTRIAASLMRQNFMQRL 88 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 E +V ++ E G+++TG+V++ +R +DLG EA++ + +P E + G R Sbjct: 89 NEVHNQQLVKEYGERIGDVVTGIVQQAHRRMTIIDLGR-VEALLPASEQVPGERYENGQR 147 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 ++ L ++ RG + V+R +L LF +EVPEI + ++EIKA AR+ G R+K+AV Sbjct: 148 LKVYLLDIKEAGRGPSIIVSRRHEGLLRGLFELEVPEIYDGLVEIKAVAREAGLRSKVAV 207 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 +N+ IDPVGACVG RG+RV+AV +EL E+IDI+ WD +PA+F+ A++PA V + + Sbjct: 208 WSNEPGIDPVGACVGPRGSRVRAVVSELRNEKIDIIQWDPDPARFIAKALSPARVREVYL 267 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDL 344 DE++ ++ V L+ AIGR GQN RLA +L+ W++++ Sbjct: 268 DEEEKQAEVIVPDDQLSLAIGREGQNARLAVKLTDWKIDIKPESQA 313 >UniRef50_B0SH17 Transcription elongation factor n=6 Tax=Leptospira RepID=B0SH17_LEPBA Length = 466 Score = 360 bits (925), Expect = 6e-98, Method: Composition-based stats. Identities = 121/455 (26%), Positives = 222/455 (48%), Gaps = 41/455 (9%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYE----QEIDVRVQI-DRKSGDFDTF 59 + ++ +K+L RE + + +L A +KK + +V+ + Sbjct: 12 LFEAIQQFCQDKSLDRELVLGVIRDSLLAAYRKKVGLEAETDDRCQVEFGSDNKNEIIIS 71 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 VV E T E++LE A+ D + +G + + R+ + AKQ++ Q++R Sbjct: 72 VLRDVVAEKTINPLEVSLEDAQKIDPKIEVGSQIRVFEKPQDLSRVLSSQAKQMVFQRLR 131 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 + E+ ++ +++ EGE+ G ++ +D +S+DLG E ++L++D P E +R GDR+ Sbjct: 132 DMEKELLYQEYKSKEGELTHGYFQRWKKDIMSIDLGK-VEGIMLKKDQNPGEKYRQGDRL 190 Query: 180 RGVLYSVRPEARGAQ--LFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 + ++ V R + ++R+ + + +LF +E+PE+ + ++EI+ AR P R K+ Sbjct: 191 KAIISRVELRPREPMPVITLSRASGDFVKKLFEMEIPEVYDGIVEIRDVARIPSYRTKVV 250 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V T+ +DPVGACVGM+G R+QA+ ELG ERIDIVL D P+ F+ NA++PA + Sbjct: 251 VTTSKSDVDPVGACVGMKGVRIQAIVRELGNERIDIVLHSDEPSIFIANAISPAKPVEVH 310 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK---------- 347 VD + + V +L+ AIG NG NV+L SQLSG+++++ TV + Sbjct: 311 VDRKRGDALVIVPDESLSLAIGINGSNVKLVSQLSGFKIDIKTVSQYNQELASPEAREKL 370 Query: 348 -----------------------HQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEEL 384 + E + ++ + +L G +E L Sbjct: 371 DRLFNAQQEAMEESEDGYNQSGQDEEEEDSGFTPLSEIPGLTPRIVGLLEAGGIKNVETL 430 Query: 385 AYVPMKELLEIEGLDEPTVEALRERAKNALATIAQ 419 +EL +I G+ + T E + + ++ + + Sbjct: 431 LEFSQEELSKISGIGKTTAEQILRLLRESIEWVEE 465 >UniRef50_Q2S1N6 N utilization substance protein A n=5 Tax=cellular organisms RepID=Q2S1N6_SALRD Length = 546 Score = 360 bits (924), Expect = 7e-98, Method: Composition-based stats. Identities = 121/420 (28%), Positives = 219/420 (52%), Gaps = 13/420 (3%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 ++++++ ++ K + R+ + +E +K+Y + + + K GD Sbjct: 3 SEDLISSFGEIARSKDMDRDTLQIIVEDVFRAMLRKRYGSDEAFEIIFNPKQGDIQILHI 62 Query: 62 WLVVD--EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 VV EV P EI A+ D+ +GD V ++ F R TA+Q Q++R Sbjct: 63 QEVVGDWEVEDPVTEIKESEAKKIDDGFAVGDEVAGGLDVSEFGRRAVMTARQTFRQRIR 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 + E+ V ++ E G+I+ G + +V R L + + E V+ R++ +P +++R G+ + Sbjct: 123 DIEKEQVYQEYTELIGDIVVGEIYQVRRHETLL-MHEDTELVLPRDEQIPGDHYRKGNML 181 Query: 180 RGVLYSVRPEAR-GAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 R V+ VR +A Q+ V+R+ P + LF +EVPE+ + ++EIK AR PG RAK+AV Sbjct: 182 RTVVKEVRRDAGSDPQVVVSRTSPVFMERLFEVEVPEVHDGIVEIKKVARIPGDRAKVAV 241 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 +++D+++DPVGACVG++G R+ AV EL E ID++ W D+P + + A++PA+ ++ + Sbjct: 242 ESHDEKVDPVGACVGVKGVRINAVVRELSDENIDVMQWSDDPQELIARALSPAEPTNVSL 301 Query: 299 DEDKH--TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356 ++D+ + V A ++QAIG+ G N++LASQL+G+E++V I Sbjct: 302 NQDEDPPRARVEVPADEVSQAIGKRGVNIKLASQLTGYEIDVYRE-------IPADEEDI 354 Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 416 D ++ E+ L G T + + + L LD T + + E + Sbjct: 355 DIEQFGDELTEETIGKLKRIGCDTGKAVLELSADALARRADLDRDTAKQVLEIIETEFEK 414 >UniRef50_A6CF45 Transcription elongation factor NusA n=3 Tax=Planctomycetaceae RepID=A6CF45_9PLAN Length = 494 Score = 359 bits (923), Expect = 9e-98, Method: Composition-based stats. Identities = 137/409 (33%), Positives = 226/409 (55%), Gaps = 33/409 (8%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 KE+L +V+A+ +K++ +E +F +E A+ +A ++ + + ++ V IDR +G+ Sbjct: 3 GKEVLRIVDAIQRDKSIDKEIVFGGIEQAILSAARRHFGDDHELSVDIDRDTGEPTVLCD 62 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 GD + I R+ QTAKQV++QK+REA Sbjct: 63 ----------------------------GDKLGKDILGEILGRVAAQTAKQVMIQKIREA 94 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER V D++ E + + ++G V +V + ++LG E ++ R + +P E+FR DRVR Sbjct: 95 ERDTVFDEYMEMQYQSVSGTVSRVEGGAVLVNLGK-IEGILPRGEQIPGESFRVNDRVRA 153 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 V+ VR ++ ++R+ P+M+ LF +E+PE+ + +I++++ AR+ G R+K+AV Sbjct: 154 VVLDVRKAGSRVKVILSRTHPDMVRRLFELEIPEVADRIIDVRSLAREAGYRSKVAVSCI 213 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D ID VGACVGMRGAR++ + EL GERIDIV W+D+ V N++ PA+V +++ Sbjct: 214 DSSIDCVGACVGMRGARIKNIVDELAGERIDIVRWNDSLQVLVPNSLQPAEVEDVILCPM 273 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361 + + V L AIGR GQNVRLAS+L GW++ VMT +L + A F+ Sbjct: 274 LGRVIVLVRDDQLPLAIGRKGQNVRLASKLVGWDIEVMTQTELDEQLDKTVEA----FSS 329 Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 410 + E+ A LV +GF + +L+ + +L E+ GL E + E A Sbjct: 330 IPGVSEELAESLVSQGFFSYYDLSVIEPDQLAELGGLTAEQCEQIVEVA 378 >UniRef50_Q7URQ7 N utilization substance protein A n=1 Tax=Rhodopirellula baltica RepID=Q7URQ7_RHOBA Length = 498 Score = 356 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 144/435 (33%), Positives = 245/435 (56%), Gaps = 39/435 (8%) Query: 1 MN-KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTF 59 MN ++IL V+++ +K + E +F+A+ESAL +A KK+Y +E DV V I R +G Sbjct: 1 MNPQDILRYVDSLHRDKNIDPELLFQAIESALQSAAKKQYGEESDVIVSISRDNGAIAAT 60 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 + + RI QTAKQVI+QKVR Sbjct: 61 LA--------------------------------GEPLGDDQIGRIGAQTAKQVIIQKVR 88 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 EAER ++ ++R+ GEI++G++ + + +++LGN EA++ R + +P E+ +RV Sbjct: 89 EAERDALMLEYRDQIGEIVSGMIGRADGGVATVNLGN-VEAILPRSEQIPGESLHANERV 147 Query: 180 RGVLYSVRPEA-RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 R +++ VRP ++ ++R++P+ + LF E+PE+ + VI IK+ +R+PG R+K+AV Sbjct: 148 RAIVFEVRPSGGNRVRVVLSRTRPQFVQRLFEQEIPELNDGVIAIKSISREPGYRSKVAV 207 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 + D++IDP+ CVG RG+R++AV EL GE ID+V +D +P + NA+ PA+V +++ Sbjct: 208 SSEDQQIDPISVCVGYRGSRIKAVREELAGEHIDVVRYDSDPEVLIPNALQPAEVDQVLL 267 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358 + + V+ L+ AIGR GQNVRLAS+L GW++ +MT A+ + + A+ Sbjct: 268 CDMIGRAIVLVQEDQLSLAIGRRGQNVRLASKLCGWDIEIMT----NAELEEQIERAVGG 323 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418 F++ I E+ A LVE+G+ + ++L+ + +E+ GL E V+ + E A+ Sbjct: 324 FSQIPGITEEIAQALVEQGYLSYDDLSVIEPDLFMEMSGLSEADVDRIVETAEAKAEEAE 383 Query: 419 QAQEESLGDNKPADD 433 QA E + + Sbjct: 384 QAAAEERRVRRDQER 398 >UniRef50_UPI00016C59C1 transcription elongation factor NusA n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C59C1 Length = 497 Score = 355 bits (911), Expect = 3e-96, Method: Composition-based stats. Identities = 133/435 (30%), Positives = 222/435 (51%), Gaps = 37/435 (8%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 IL +V+ + E+ + ++ IF+ + SA+ A ++ ++ E V V ID +G Sbjct: 13 ILELVDKLHEERKIAKDVIFKGISSAIQVAAERHFQVEEGVFVSIDEATGHIV------- 65 Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 GD +++ +T RI Q+AKQ+I+QK+REAE Sbjct: 66 ----------------------AKYGD---QELDPITLGRIAAQSAKQMIIQKIREAESD 100 Query: 125 MVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLY 184 V +F + E++ G V +V+ + LG +EA++ R + +P E G+RV+ ++ Sbjct: 101 TVFTEFTGKKYELLVGTVTRVDAGTAIVSLGK-SEALLPRSEQIPGETHHVGERVKAIIM 159 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 244 VR + ++ ++R+ PE + LF E+PEI E +I+I+A AR+ G R+K+AV + D + Sbjct: 160 EVRKQGNRVKIVLSRAHPEFVKALFEEEIPEIDERIIDIRAVAREAGYRSKVAVTSIDMK 219 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHT 304 +D VGACVG+RG+R++ V EL GERIDIV W+D + NA+ PA ++ + Sbjct: 220 VDAVGACVGVRGSRIKNVIEELNGERIDIVRWNDALQVLIPNALQPAQISDVFTYPKLGR 279 Query: 305 MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLD 364 + V L+ AIGR GQNVRLAS+L GW++ +MT D+L A F + Sbjct: 280 AIVLVTDDQLSLAIGRRGQNVRLASKLVGWDIEIMTHDELAEA----LERAERWFGQLPH 335 Query: 365 IDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEES 424 + L+EEGF + ++ + L E GL + + + A+ + ++ EE Sbjct: 336 ASPELTNALIEEGFLSYNDITMTDDEGLAEFTGLTQEAADEVVMYAEEYADVMERSVEEE 395 Query: 425 LGDNKPADDLLNLEG 439 + A L+ Sbjct: 396 RRQAELAAKEARLQE 410 >UniRef50_A4E6U9 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6U9_9ACTN Length = 415 Score = 355 bits (911), Expect = 3e-96, Method: Composition-based stats. Identities = 115/399 (28%), Positives = 192/399 (48%), Gaps = 38/399 (9%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++++ + + EK + + + + LE +LA + + E +V IDR +G +R Sbjct: 4 SDMMSALMELCQEKHIDQLYLIDRLEQSLAKSYAEILHLEWGAKVTIDRTTGKIYVYRLE 63 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 + D + + E + RI Q AK I VR + Sbjct: 64 PIDDSMDEEGNFTEFEE---------------IDVTPKNTSRIAAQHAKAEINAIVRNSA 108 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVIL----------REDMLPREN 172 R + ++F G++I+G V + D + + EA + R + E Sbjct: 109 REQIYEEFSGRIGDLISGTVLQSTPDFTIVKIREGVEAELPHFDQRRYENERNERPMGER 168 Query: 173 FRPGDRVRGVLYSVRP----------EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIE 222 + ++ V+ VR E + ++R+ PE++ LF EVPEI E ++ Sbjct: 169 YLHNQHIKAVIIDVRDPNSNLQPVRGEHSRPPIVISRTHPELMRRLFEQEVPEIYEGTVQ 228 Query: 223 IKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQ 282 IK+ AR+PG R+K+AV + D R+DPVGACVG +G+RV+AV EL GER+D++LWD +PA Sbjct: 229 IKSIAREPGQRSKVAVHSLDDRLDPVGACVGPKGSRVRAVVGELRGERVDVILWDADPAV 288 Query: 283 FVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 +V NA++PA V +++DE+K + V L+ AIG+ GQN RLA++L+GW +++ + Sbjct: 289 YVANALSPAKVTRVLIDEEKAYAGVIVPDDQLSLAIGKEGQNARLAARLTGWHIDIKSET 348 Query: 343 ---DLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGF 378 D+ A D D D + E+G Sbjct: 349 LAADILKNVPVHEEPAADLIGDEEDEDVRRCEYVSEDGI 387 >UniRef50_C1QB15 Transcription termination factor NusA n=2 Tax=Brachyspira RepID=C1QB15_9SPIR Length = 498 Score = 354 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 131/459 (28%), Positives = 238/459 (51%), Gaps = 39/459 (8%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M + + ++ +S+EK + E + E + S + A KKKY +I+ + D K+ ++ Sbjct: 1 MFENVGTYLQQLSDEKDISVELLKEVIASTMELALKKKYGNDINFHIHFDNKNNP-TVYK 59 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIE-SVTFDRITTQTAKQVIVQKVR 119 VV+EV KEI+LE A+ D+ +NLGD V ++ F RI + AK QK+ Sbjct: 60 GANVVEEVRDKNKEISLEEAKKLDQDINLGDEVLILVDQVEAFGRIESMVAKTTFFQKIS 119 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 + E+ ++ ++F+ E +++ G ++ ++ I ++LG E + ++D PRE++ GDR+ Sbjct: 120 DLEKNIIYNEFKRRENQLVNGYFQREHKGTIYINLGK-TEGELQKKDQSPREHYTVGDRI 178 Query: 180 RGVLYSV-----RPEARGA--QLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 232 R +Y V + ++ +TR+K + + +LF +E+PEI + IEIK R PG Sbjct: 179 RAYIYKVQGGKDDRTGKEIPTKILLTRTKADFIKKLFELEIPEIADGTIEIKNVVRQPGL 238 Query: 233 RAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPAD 292 + K+AV +N +DP+GAC+G +G R+Q++ E+ GE+ID+V W + +++ A+ PA Sbjct: 239 KIKVAVVSNKPEVDPIGACIGQKGIRIQSIIKEIEGEKIDVVKWSKDIREYIAEAITPAK 298 Query: 293 VASIVV-DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA----- 346 I++ D +K I + L+ A+G++G NV+LASQL+G+ ++ T D++ Sbjct: 299 PIRIIITDPEKKEAMIIIPDEQLSLALGKSGYNVKLASQLTGYYFDIKTETDIKENPELL 358 Query: 347 -----------KHQAEAHAA------------IDTFTKYLDIDEDFATVLVEEGFSTLEE 383 E + IDE L++ G +++EE Sbjct: 359 KDIVPLNQIFSDTAEETENSSEAEAAEAAEVFESNLYSLQGIDESIIKTLIDNGINSIEE 418 Query: 384 LAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQE 422 L + +E++E LD+ TV+ L K+ + + E Sbjct: 419 LYNLSAEEIMEKTNLDKDTVDNLMLVMKDVVEIVESEDE 457 >UniRef50_C6JIH8 Transcription elongation factor NusA n=2 Tax=Fusobacterium RepID=C6JIH8_FUSVA Length = 361 Score = 354 bits (908), Expect = 6e-96, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 210/355 (59%), Gaps = 2/355 (0%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 K L ++ + EK + +E + +E AL A KK + +E +V V+I+R++GD + Sbjct: 7 KVFLEALDELEREKGISKESLLLTVEQALLAAYKKNHGEEENVEVEINRETGDVKLYEVK 66 Query: 63 LVVD--EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV+ ++ EI+L+ A+ + +GD V +I F R Q KQ+++QKVRE Sbjct: 67 TVVETEDLYDAAIEISLDDAQEIKKRAKVGDIVRIEINCEEFRRNAIQNGKQIVIQKVRE 126 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER + D+F+E E +II G++++++ + EA++ + P + +R G+R++ Sbjct: 127 AERQYIYDRFKEKENDIINGIIRRIDEKKNIFVEFDGIEAILPTTEQSPADTYRVGERLK 186 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 L V + ++ ++R +L +LF +E+PEI +IEIKA AR+ GSRAK+AV + Sbjct: 187 VFLAEVEKTNKFPKIVISRKHEGLLKKLFELEIPEITSGLIEIKAVAREAGSRAKVAVYS 246 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 +D ID VGAC+G +G R++ + EL GE+IDIV+W ++ +FV ++PA V S+ V E Sbjct: 247 SDPNIDTVGACIGQKGLRIKNIVNELNGEKIDIVIWKESVEEFVSAVLSPAKVKSVEVIE 306 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA 355 D++T + V+ L+ AIG+NGQN RLA++L+G +++ T + + + Sbjct: 307 DENTARVIVDNSQLSLAIGKNGQNARLAAKLTGMRVDIKTENSSKDDSLEGEQSE 361 >UniRef50_Q0H8S9 NusA n=2 Tax=Spiroplasma RepID=Q0H8S9_SPIKU Length = 483 Score = 353 bits (907), Expect = 8e-96, Method: Composition-based stats. Identities = 119/448 (26%), Positives = 226/448 (50%), Gaps = 3/448 (0%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 ++L+ ++ + +EK + R+ I ++++ + A +K ++ E + V+I +K+G + Sbjct: 16 GAKLLSTIDEIVSEKQISRDLILDSIKEGIRKAYEKHFDPEATIIVEIHQKTGQIKVEKE 75 Query: 62 WLVVDEVTQPTKEITLEAARY-EDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 VV +V EI L A+ E + + D V +Q+ S F R+ Q+I Q+++E Sbjct: 76 LTVVKKVEDDLLEIGLNEAKEKYGEQITIDDKVYEQVNSEEFSRLAIFQVGQIIKQQIKE 135 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AE+ + D++ +G ++TGVV + +++ A I R++++ E+F G + Sbjct: 136 AEKDSIFDEYIIQKGHLMTGVVIAAEEKYLLVEVERTF-AYIPRKNLIFSEHFEVGQPIT 194 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V Q+ +R+ + L L E+PEI E+VIE+KA ARDPG R+KIAV + Sbjct: 195 FLAEDVVKSKNAGQIIGSRTSNDFLYSLLEREIPEIFEQVIEVKAIARDPGRRSKIAVYS 254 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 ++ IDP+GACVG +G+R+ V+ EL E+IDI +++DN QF+IN+++P V SI ++ Sbjct: 255 TNENIDPIGACVGSKGSRINKVTAELQDEKIDICIYNDNSQQFIINSLSPVKVISITTND 314 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 ++ D+ V L+ AIG+ G + +L ++L+ W+LN+M+ + K T Sbjct: 315 EEKEADVVVPDEQLSLAIGKGGSSAKLVAKLTKWKLNIMSYSEALTKQVEILWNGNLTTD 374 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEA-LRERAKNALATIAQ 419 + + + + + + E E ++E E + +N Sbjct: 375 ELSALKVKLKDKIKPKAIVETNTVDITAGLPVEEFEIIEEQMAEETMILDEENYHVDDLT 434 Query: 420 AQEESLGDNKPADDLLNLEGVDRDLAFK 447 + +N+ + NL + + Sbjct: 435 ESTPKVLENEIQEIEDNLSYFESEQFEN 462 >UniRef50_C7H125 Transcription termination factor NusA n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H125_9FIRM Length = 367 Score = 353 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 125/363 (34%), Positives = 206/363 (56%), Gaps = 2/363 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKEI+ + + E + ++++ + ++ ++ A K Y ++ VQID +G Sbjct: 1 MNKEIIEALGQIEKETGIAKDELIDMMKESVLHAFHKNYGEDSRAEVQIDEDTGGTYVIV 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 +V EV P E++L+ + DE G V+ +++ F RI QTAKQV +QK++E Sbjct: 61 SKDIVLEVENPETEVSLDEMKAIDERYEEGGVVQYTVDASKFGRIAAQTAKQVFLQKIKE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + +F+ EGEIITG V +V I + L N A+I + + E + GDR++ Sbjct: 121 REKQKIFSEFKGREGEIITGKVSRVTMRAIHVAL-NTTTAIIPLAEQIQGETYEVGDRIK 179 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + +V RG Q+ ++R P+ + ELF+ EVPEI ++I AR+ G+R KIAV + Sbjct: 180 ACIKTVEDRQRGPQIVLSRRSPQFVEELFKREVPEIENGTVKIMGIAREAGNRTKIAVYS 239 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 +++ +D VGAC+G+RG R+ A+ +LG E++D+VLW+++P +FV A+ PA I++ E Sbjct: 240 DNEELDAVGACIGVRGTRIGAILDDLGYEKVDVVLWNEDPVKFVKEAIKPAFPDRIILLE 299 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + + + V L+ AIGR GQNVRLAS+L ++V T D L+ ID Sbjct: 300 EDK-VIVIVADDELSLAIGRKGQNVRLASKLCKMSIDVKTKDGLKEMIDNGEITGIDFEE 358 Query: 361 KYL 363 + Sbjct: 359 EEE 361 >UniRef50_C0QTL7 Transcription termination factor NusA n=2 Tax=Hydrogenothermaceae RepID=C0QTL7_PERMH Length = 374 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 134/374 (35%), Positives = 214/374 (57%), Gaps = 20/374 (5%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M ++ V+EAV+ EK +P E I +AL + A KK+Y + +V+V D+++ + Sbjct: 1 MAVKLKNVIEAVAKEKNVPEEIIEKALIDGITAAVKKEYGYKDNVQVIFDKEADELKVLL 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + V V P ++I+LE A+ D +G YV + RI AK+VI KV Sbjct: 61 KKRVTPFVENPKRDISLEEAKKIDPKAEVGSYVFVPLNLEELGRIALNAAKEVITHKVAR 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ ++ +F+E EG+I+TG V++ +I +DLG EAV+ E+ + +E +R GDR+R Sbjct: 121 VEKNILFKEFKELEGKIVTGTVRRFEDGDIIVDLGR-IEAVLPEEEQIKKEKYRVGDRIR 179 Query: 181 GVLYSVRPEAR-------------------GAQLFVTRSKPEMLIELFRIEVPEIGEEVI 221 ++ V + + ++R+ P L +L IEVPEI E I Sbjct: 180 ALILKVIKDGSYPVYERGKVKRVIKPIDRDKPLVILSRTHPNFLRKLIEIEVPEIQEGEI 239 Query: 222 EIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPA 281 EIKA AR+PG RAK+AV T DK IDPVG VG++G+R+Q VS EL GE+ID++ WD +PA Sbjct: 240 EIKAIAREPGERAKVAVWTEDKNIDPVGVVVGLKGSRIQNVSAELSGEKIDVIEWDPDPA 299 Query: 282 QFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 QF++ A++P+ + ED+ +++AV L+ AIG+ G N +LA +L+GW +++++ Sbjct: 300 QFILRALSPSHPKKWRLLEDEKRIEVAVPKNELSLAIGKGGINAKLAHKLTGWHIDILSE 359 Query: 342 DDLQAKHQAEAHAA 355 +D + Q A Sbjct: 360 EDFERIQQLPRKTA 373 >UniRef50_D2MPS9 Transcription termination factor NusA n=3 Tax=Erysipelotrichaceae RepID=D2MPS9_9FIRM Length = 569 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 144/475 (30%), Positives = 250/475 (52%), Gaps = 15/475 (3%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYE-QEIDVRVQIDRKSGDFDTFRR 61 K+ LA + V E+++P+ I EAL+ A+A A KK E +IDV +I+ K D F+ Sbjct: 6 KKWLAALTDVEEERSIPQSVILEALKEAMAKAYKKNEELPDIDVVAEINEKKKSIDLFQN 65 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 ++VV EV E++LE AR D++ +GD V +E + R AK V+ QK+REA Sbjct: 66 YVVVTEVEDDELEMSLEQARQLDKNAQVGDTVRRPVEIESMTRAAAMLAKNVMRQKIREA 125 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E+ V +++ E++ G ++ + ++LG A++L + +P E R R++ Sbjct: 126 EKEAVYNEYIGQLNEMVFGTIESIKDKFTLVNLGKTT-ALMLSGEQIPNERLRENQRIKV 184 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 V+ V E +GAQ+ V+R ++ LF EVPEI + V+EIKA AR+ G R K+AV ++ Sbjct: 185 VITEVNKEGKGAQVLVSRGTAMLVRRLFEAEVPEIFQGVVEIKAIAREAGERTKMAVLSH 244 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 +DP+GAC+G RG+RVQ + EL GE++DI W ++ V NA++PA++ +++ +ED Sbjct: 245 HPEVDPIGACIGPRGSRVQEIIKELKGEKVDIFEWSEDITSLVQNALSPAEIETVIPNED 304 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT---VDDLQAKHQAEAHAAIDT 358 ++ + V L+ AIG+ G+N RLA +L+ ++++ T +++ ++A A + Sbjct: 305 G-SLMVIVAEDQLSLAIGKRGKNARLAVKLTNRKIDIKTRAELEEAGVDYEALMEKAKER 363 Query: 359 FTKYLDIDEDFAT--------VLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 410 K ++ A + + TLE+L +EL E E E E + + Sbjct: 364 KEKLQIEAQERARKAALEAAKLAESKRLETLEKLRAENSEEL-EQEFFPEEMQEVVDDGL 422 Query: 411 KNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGID 465 + I + E + K ++++ E + + LE+LA + Sbjct: 423 VEEVDHIEETSSEVREEEKVEEEIMVEEKPIETKKEEKKSSKHANLEELANKATY 477 >UniRef50_Q04GN3 Transcription elongation factor n=18 Tax=Lactobacillales RepID=Q04GN3_OENOB Length = 473 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 115/382 (30%), Positives = 210/382 (54%), Gaps = 8/382 (2%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 +E+ + ++A+ EK + +E +L+ L TA KK +E E +V V +D + +F+ + Sbjct: 7 RELFSALQALQAEKGISQEDAITSLKDTLVTAYKKNFEGETNVEVDVDPEKQEFNLLQIK 66 Query: 63 LVVDEVT--QPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V+ + P EI L+ AR + + GD ++ +I F R+ Q+ K Q +RE Sbjct: 67 EVIPDGDMIDPYSEIYLKDAREINSAYEAGDQIKFEINPRDFGRLAAQSGKNKSTQTIRE 126 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 E+ + ++ E EI++ V + ++ + + + + EA + +D +P E ++ GD ++ Sbjct: 127 KEKEAIHARYEGFEHEIVSARVAREDQRFLWVTMPDGQEAAMGDKDRIPGETYKTGDPIK 186 Query: 181 GVLYSVRPE-ARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 ++ V RG Q++V+R+ PE++ LF EVPE+ + + I++ AR+ G R+K+AV+ Sbjct: 187 VLINRVEDSATRGPQIYVSRTSPELVKRLFEQEVPEVYDGTVVIESIAREAGDRSKVAVR 246 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 T D +DP+G VG RG+RVQAV EL GE +DIV W ++ AQ++ NA+ PA+V ++ Sbjct: 247 TTDSNLDPIGTLVGTRGSRVQAVVNELHGENMDIVEWVEDEAQYIANALNPAEVVDVIFS 306 Query: 300 ED-KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK----HQAEAHA 354 D + + + V L+ AIG+ GQN RLA++L+ +++++ + + E A Sbjct: 307 PDNDNEVTVIVPDYQLSLAIGKRGQNARLAAKLTKFKIDIKSETQAENDPQLQAILEESA 366 Query: 355 AIDTFTKYLDIDEDFATVLVEE 376 D ++ L +E Sbjct: 367 KYAEEEDQSDETDETDEALEDE 388 >UniRef50_C7LXY2 NusA antitermination factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LXY2_ACIFD Length = 330 Score = 352 bits (903), Expect = 2e-95, Method: Composition-based stats. Identities = 122/350 (34%), Positives = 192/350 (54%), Gaps = 25/350 (7%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N E++ +E ++ EK L E + E+L +ALA A K++ + V+ID SG Sbjct: 5 NPEVMDALEVIAREKGLSVETLLESLANALAAAYKRRPGAAEEAYVEIDPASGTIRVIC- 63 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 + DE+ + E + F RI Q AKQV++QK+REA Sbjct: 64 -------------------QELDENGTV--VREWEDTPRDFGRIAAQAAKQVMLQKIREA 102 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 ER +++ EG+++TG+V +++ LDLG EA++ + E + R++ Sbjct: 103 EREQKYEEYAGREGDVVTGIVSQIDPRFTLLDLGK-IEAIMPHSESPSNERYSVNQRLKA 161 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + VR +G Q+ V+R+ P ++ LF +EVPEI V+E+KA AR+PG R KIAV +N Sbjct: 162 YIVEVRRSIKGPQIVVSRTHPGLVRRLFEVEVPEIASGVVEVKAIAREPGHRTKIAVWSN 221 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301 D+ +DPVGACVG RG+RV V EL GE++DIV + ++ A+FV A+ PA S V + Sbjct: 222 DRSVDPVGACVGARGSRVHTVVNELLGEKVDIVPFSEDLAEFVERAIVPAHALSATV--E 279 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAE 351 + V L+ AIGR GQN RLA++L+G L + +++ + + + Sbjct: 280 GRDALVVVPDDQLSLAIGREGQNARLAARLTGTHLEIRPQSEVEGRQEGQ 329 >UniRef50_C7NH16 Transcription termination factor NusA n=55 Tax=Actinobacteria (class) RepID=C7NH16_KYTSD Length = 357 Score = 350 bits (899), Expect = 7e-95, Method: Composition-based stats. Identities = 112/348 (32%), Positives = 191/348 (54%), Gaps = 20/348 (5%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M ++ AV+ V E+ +P + + ALE+AL A + + + RV++DR+SG + Sbjct: 1 MKIDM-AVLREVEREREIPLDVLVPALETALLQAYQHEAGGRRNARVELDRRSGQVVVWA 59 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 R LE + D F RI T +QVI Q++R+ Sbjct: 60 R----------EDAPVLEDGTRGEAGPEFDDT------PEDFGRIGAFTVRQVIRQRLRD 103 Query: 121 AERAMVVDQFREHEGEIITGVVKK-VNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 E V+ F+ EG+I+ GV+++ + I +DLG E ++ + +P E+++ GDR+ Sbjct: 104 LEDEAVLGDFKGKEGDIVAGVIQQSNDPHAIHVDLG-TVEGLLGTSEQVPLEDYKHGDRI 162 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R + + +G + ++R+ P ++ +LF +EVPE+ + + I++ AR+ G R+K+AV+ Sbjct: 163 RCYVIHAKRGMKGPLIGLSRTHPNLVRKLFALEVPEVADGTVRIESIAREAGHRSKMAVR 222 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VV 298 ++ G+C+G G RV+AV EL GE+IDIV +DD+P +FV A++PA V S+ VV Sbjct: 223 ATQPGVNAKGSCIGPMGGRVRAVMNELQGEKIDIVDYDDDPRKFVAAALSPAKVTSVTVV 282 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA 346 DE + + V A L+ AIG+ GQN RLA++L+GW +++ Sbjct: 283 DEKTRSARVTVPAHQLSLAIGKEGQNARLAARLTGWRIDIQPDHTADE 330 >UniRef50_B8DW42 N utilization substance-like protein n=11 Tax=Bifidobacterium RepID=B8DW42_BIFA0 Length = 358 Score = 348 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 194/361 (53%), Gaps = 16/361 (4%) Query: 9 VEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEV 68 + A++ E+ + E + AL AL A K RV++D ++G F + R + E Sbjct: 8 IHALAQEQGIDAETVDAALSEALRLAYLKMPHAAKYARVELDPRAGSFTIWARDEIPQEP 67 Query: 69 TQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVD 128 T+ + LG+ +D F R+ TA+QVI Q R+AE V Sbjct: 68 TEDNPH----------PAPELGEEYDD--TPHDFGRLAASTARQVIQQLFRKAEDDRVFG 115 Query: 129 QFREHEGEIITGVVKK--VNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSV 186 F G++ITGVV++ + N+ + +G+ EA++ R + +P E +R G+R+R + +V Sbjct: 116 AFSGQRGKLITGVVQQDVKDPANVHVAVGD-VEALLPRREQVPGERYRHGERIRVYVTTV 174 Query: 187 RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRID 246 +G ++ V+RS PE++ LF EVPE+ + I A AR+ G+R KIAV+ N I+ Sbjct: 175 ARGLKGPEIIVSRSHPELVRRLFEREVPELASGAVSIMAIAREAGARTKIAVRANTPGIN 234 Query: 247 PVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKHTM 305 P GA +G G+RV+AV LG E+IDI+ W NPA+F+ A++PA V+ + V+ E T Sbjct: 235 PKGALIGPGGSRVRAVMENLGSEKIDIIDWSANPAEFIAAALSPAVVSDVQVISEKNQTA 294 Query: 306 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDI 365 + L+ AIG+ GQN RLA++L+GW++ + + AK + +A A D Sbjct: 295 IAFINDEQLSLAIGKEGQNARLAAKLTGWKIGIESNSAHAAKLREQAAKAADGTQSGNAE 354 Query: 366 D 366 + Sbjct: 355 E 355 >UniRef50_C6X2U0 Transcription termination protein NusA n=2 Tax=Flavobacteriaceae RepID=C6X2U0_FLAB3 Length = 415 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 114/417 (27%), Positives = 211/417 (50%), Gaps = 6/417 (1%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 ++ EK++ + + +E +L T +K+++ + V ++ GDF F Sbjct: 3 GLALIEAFGDFKEEKSISKIDLMAIIEDSLKTLLRKRFDSDDHFDVIVNPDKGDFQIFLN 62 Query: 62 WLVVDEV--TQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 +V++ EI + A+ D + +G+ +I R + T KQ++ K++ Sbjct: 63 KTIVEDDMSEDDDLEIEISEAKKIDPTFEVGEEFTIEIPIEGLGRRSILTLKQILATKLQ 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 E A++ ++FR+ GEI+ G V + ++ L + E ++ +E+ +P + F+ G+ + Sbjct: 123 EHNNAVLYEEFRDKIGEIVVGEVHHIRHKHVILLDDEDNEFILPKENQIPSDFFKKGENI 182 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R ++ SV + Q+ V+R+ P+ L +L +E+PEI + I +K R PG +AKIAV Sbjct: 183 RTIVESVDFKGSKPQIIVSRTAPKFLEKLLELEIPEIQDGTIILKKVVRIPGEKAKIAVD 242 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 D RIDPVGACVG++G+R+ V EL E ID++ W NP V A+ V I ++ Sbjct: 243 AYDDRIDPVGACVGVKGSRIHGVVRELKNENIDVIQWSKNPEIMVKRALGNVTVNKIEIN 302 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTF 359 E+ + +++ IG+ GQN+RLAS LSG+E++V + + A Sbjct: 303 EETKYAMVYTPVEEISRVIGKQGQNIRLASWLSGYEIDVHRESAEDDDVELKEFAG---- 358 Query: 360 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 416 + DI++ + G +T + + + LL++ L+E T+E +++ K Sbjct: 359 SDAGDIEQWIIDEFNKVGLTTAKSVLDKDTEALLKMVDLEEETIEEVKQILKEEFED 415 >UniRef50_C8W720 NusA antitermination factor n=9 Tax=Coriobacteriaceae RepID=C8W720_ATOPD Length = 413 Score = 346 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 106/362 (29%), Positives = 178/362 (49%), Gaps = 35/362 (9%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M E++ + + EK + + + LE +LA + + RV IDR +G + Sbjct: 1 MASEMMEALMLLCQEKHIDELYLLDRLEQSLAKSYADVLHLDFGARVTIDRATGRVYVYE 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + + + + + RI Q AK I VR Sbjct: 61 LVPKGEPDEETGEYTEFDE---------------VDVTPPDTSRIAAQHAKAEIKTLVRN 105 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVIL----------REDMLPR 170 A RA + D+FR G+IITG V + D + + EA + R++ Sbjct: 106 AARAQIYDEFRGRVGDIITGTVLQSTPDFTIIKIREGVEAELPHFDQRRFPDERDERPAG 165 Query: 171 ENFRPGDRVRGVLYSVRP----------EARGAQLFVTRSKPEMLIELFRIEVPEIGEEV 220 E + R++ ++ VR E + + V+R+ P+++ LF +EVPE+ + V Sbjct: 166 ERYLHNQRIKAIIVDVRDPNATQPAVRGERQRPPIVVSRTHPDLIRRLFELEVPEVYDGV 225 Query: 221 IEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNP 280 + I++ AR+ G R+KIAV + D+R+DPVGACVG +G+RV+ V +EL GER+D+V W D+ Sbjct: 226 VSIRSIAREAGVRSKIAVSSVDERLDPVGACVGPKGSRVRTVVSELRGERVDVVPWFDDA 285 Query: 281 AQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 A+ V +A++PA V+ ++VD + V L+ AIG+ GQN RLA++L+G +++ Sbjct: 286 ARCVASALSPARVSRVIVDGATGHATVIVPDDQLSLAIGKEGQNARLAARLTGLHIDIKN 345 Query: 341 VD 342 Sbjct: 346 ES 347 >UniRef50_B0MQX1 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQX1_9FIRM Length = 370 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 188/347 (54%), Gaps = 5/347 (1%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 E+ + ++ EK + + E +++AL A KK+Y + +++ ID G FD + Sbjct: 8 ELFEALTLLAKEKGIDPAVLIEKIQTALVIAIKKEYPRSENIKFDIDIAKGKFDVAIQKE 67 Query: 64 VVDEVTQPTKEITLEAARYE-DESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 V EV +I++E A+ L GD V ++++ F RI QTAKQVI Q ++E E Sbjct: 68 VAAEVEDDANQISMEEAKTHTRRKLEYGDIVAIKLDTQHFGRIAAQTAKQVIKQGLKEIE 127 Query: 123 RAMVVDQFREHEGEIITGVVKKVNR--DNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 R +V Q+ + E +T V K N +++L N E + R + +P E RPGD V+ Sbjct: 128 REQLVAQWGGLQDEAVTVTVLKTEPRTGNATVNL-NGNEVPLFRSEQIPGEVLRPGDMVK 186 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V L ++R E++ LF EVPEI + +EIKA +R+ GSR+K+AV + Sbjct: 187 VYVSGVSATDHRPMLKISRVNKELVKRLFESEVPEIYDGTVEIKAISREAGSRSKVAVIS 246 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV-D 299 N+ +D +GAC+G R+ V ELGGE++D+V + + P +F+ A+ P+DV + + D Sbjct: 247 NNPDVDALGACIGPGRQRISKVCAELGGEKMDVVFYSEKPEEFIAQALKPSDVIRVEIPD 306 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA 346 + V L+ AIG GQN +LA++L+G+++++ Sbjct: 307 PEVKACTAIVPDNQLSLAIGNKGQNAKLAAKLTGFKIDIRPESGFYE 353 >UniRef50_B2J957 NusA antitermination factor n=8 Tax=Cyanobacteria RepID=B2J957_NOSP7 Length = 425 Score = 343 bits (881), Expect = 7e-93, Method: Composition-based stats. Identities = 124/415 (29%), Positives = 212/415 (51%), Gaps = 28/415 (6%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATAT----------KKKYEQE--IDVRVQIDRK 52 + ++E++S E+ LPR + A+ AL +K+++++ + V++D Sbjct: 9 LKELIESISRERNLPRLAVQSAIREALLKGYERYRRAQNLERKQFDEDYFENFEVELDID 68 Query: 53 SGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESV--TFDRITTQTA 110 F +V+EV +I+L+ + LGD V + F R+ Sbjct: 69 GEGFRVLSTKTIVEEVNNTDHQISLDEVQQVAPEAQLGDSVVLDVTPDQGEFGRMAAMQT 128 Query: 111 KQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNN-----AEAVILRE 165 KQV+ QK+R+ +R MV ++F++ EG ++ V + R ++ L + + EA + + Sbjct: 129 KQVLAQKLRDQQRQMVQEEFQDLEGTVLQARVLRFERQSVVLAVSSGFGQPEVEAELPKR 188 Query: 166 DMLPRENFRPGDRVRGVLYSVRP-EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIK 224 + LP +N+R + L V + RG QL V+R+ +++ LF EVPEI +EV+ I Sbjct: 189 EQLPNDNYRANATFKVYLKKVSQGQQRGPQLLVSRADAGLVVYLFANEVPEIEDEVVRIV 248 Query: 225 AAARDP-------GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWD 277 A AR+ G R KIAV T D+ +DPVGAC+G RG+R+Q V EL GE+ID++ W Sbjct: 249 AVAREANPPSRYVGPRTKIAVDTLDRDVDPVGACIGARGSRIQVVVNELRGEKIDVIRWS 308 Query: 278 DNPAQFVINAMAPADVASIVV-DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWEL 336 +PA ++ NA++PA V + + D + + V L+ AIG+ GQNVRLA++L+GW++ Sbjct: 309 PDPATYIANALSPARVDEVRLMDPESRQTHVLVAEDQLSLAIGKEGQNVRLAARLTGWKI 368 Query: 337 NVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKE 391 ++ + E A+ + + D + L +E LEE + Sbjct: 369 DIKDKAKYDYAGEDEKFTAVRAKYQTEEDDLELDEELEDENQDELEEEDSFDNND 423 >UniRef50_B1CB56 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CB56_9FIRM Length = 394 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 221/366 (60%), Gaps = 22/366 (6%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 K+ + ++ ++ K + +E+I A+E AL A KK +D+ V I+R SG D F Sbjct: 14 KDFIEALDEINKTKGIDKEEIIVAVEQALVAAYKKDTRTNVDLVVNINRVSGAIDAFYSK 73 Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE 122 +V+EV +EI+L A D+S LG + I+ F RI TQ AKQ+I+QK++E+E Sbjct: 74 QIVEEVEDEDREISLHEALVLDKSAVLGASMVTHIDPKGFGRIATQNAKQLIIQKLKESE 133 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDN----------------ISLDLGNNAEAVILRED 166 R ++ + F + + E++TGV+++ I +DLG AE ++ ++ Sbjct: 134 RNIISNTFMKKKDEMVTGVIQREEYKEMRKMVHGEPIKEQNRIIHIDLGK-AEGIMNSQN 192 Query: 167 MLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 + E++ PG R++ + V +G Q+ ++R+ P ++ LF EV EI + ++EIK+ Sbjct: 193 QVRSEHYHPGMRLKVYVSDVILTPKGPQIILSRTHPGLIRRLFEEEVAEISDGIVEIKSI 252 Query: 227 ARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVIN 286 +R+ GSR+K+AV T D +IDPVG C+G +G R+Q V E+G E+IDI+ + ++P +++ N Sbjct: 253 SREAGSRSKMAVYTADDQIDPVGTCIGPKGFRIQNVLNEIGDEKIDIIKYSEDPVEYIKN 312 Query: 287 AMAPADVASIVV-----DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 A+APADV + + ++ K++ + V+ L+ AIG++GQNVRLA++L+GW++++ + Sbjct: 313 ALAPADVLRVDILQTEEEDGKNSAAVVVDDSQLSLAIGKDGQNVRLAARLTGWKIDIKSK 372 Query: 342 DDLQAK 347 +Q + Sbjct: 373 SSVQEE 378 >UniRef50_B2V8D7 NusA antitermination factor n=2 Tax=Sulfurihydrogenibium RepID=B2V8D7_SULSY Length = 371 Score = 340 bits (873), Expect = 7e-92, Method: Composition-based stats. Identities = 133/368 (36%), Positives = 221/368 (60%), Gaps = 20/368 (5%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKY--EQEIDVRVQIDRKSGDFDT 58 M+ ++ V+E +S EK +P + I +AL + TA KK++ ++ V++ D++ + Sbjct: 1 MSVKLKNVIETISREKNIPEDVIEKALRDGILTAVKKEFKLREKDAVKIIFDKEKDELKV 60 Query: 59 FRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118 + V V TKEI LE A+ D + + G YV + RI AK+VI +KV Sbjct: 61 LIKKKVTPFVEDETKEIALEEAKNYDPNADYGKYVYVPLNLEDIGRIALSVAKEVIAKKV 120 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 + ER ++ +F+++EG+IITG V++ D+I +DLG EA++ +E+ +P+E ++ GDR Sbjct: 121 SKVERDILYREFKDYEGKIITGTVRRFEGDDIIVDLGR-IEAILPKEEQIPKEKYKIGDR 179 Query: 179 VRGVLYSVRPEA------RG-----------AQLFVTRSKPEMLIELFRIEVPEIGEEVI 221 +R ++ V E +G + ++R+ P L +L IEVPEI E I Sbjct: 180 IRALVLKVSKENTYPIIEKGKLKRVIKVFEPPMVILSRTHPNFLKKLLEIEVPEIAEGEI 239 Query: 222 EIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPA 281 E+KA AR+PG RAK+AV + DK IDPVG VG++G+R+ VS+EL GE+ID++ WD++PA Sbjct: 240 EVKAVAREPGERAKVAVYSKDKNIDPVGVVVGLKGSRILNVSSELSGEKIDVIEWDEDPA 299 Query: 282 QFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 +F+I A+APA + + ++IAV L+ AIG+NG N +LA +L+GW +++++ Sbjct: 300 KFIIRALAPARAKKYRLLPREKRIEIAVPREELSLAIGKNGINAKLAHKLTGWHIDILSE 359 Query: 342 DDLQAKHQ 349 +D + + Sbjct: 360 EDFERIQK 367 >UniRef50_D0J8H0 Transcription elongation factor NusA n=36 Tax=Bacteroidetes RepID=D0J8H0_BLASP Length = 419 Score = 340 bits (872), Expect = 9e-92, Method: Composition-based stats. Identities = 111/418 (26%), Positives = 211/418 (50%), Gaps = 10/418 (2%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 N+ ++ +EK + R + LE ++ +KKY+ + + ++ GD + +R Sbjct: 3 NEALIDSFSVFKDEKNIDRASLMAILEESIRCVLRKKYDSSKNYDIIVNPDQGDLEIWRN 62 Query: 62 WLVVDE--VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 +VV + V KEI L AR + +G+ V +++E + R + +Q ++ K+ Sbjct: 63 RIVVQDGTVKDVNKEIELSTARKIEIDFEIGEEVTEKVELKSLGRRAILSLRQNLLSKIN 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 E + + +F+ GEII V + I + E V+ +++ +P + FR GD V Sbjct: 123 EYDNTNIYKKFKNKIGEIINVEVYHILPKQIIMRDEEQNEMVLPKQEQIPNDFFRKGDPV 182 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R ++ V + +TR L ELF++E+PE+ E +I +K AR PG +AK++V Sbjct: 183 RALVKRVDWKDNKPLAILTRKDDSFLEELFKLEIPEVSEGLITVKKVARIPGEKAKVSVD 242 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 + D RIDP+GACVGM+G+R+ + EL E ID++ + N ++ A++PA V+ + V+ Sbjct: 243 SYDDRIDPIGACVGMKGSRIHPIVRELKNENIDVINYTTNIQLYITRALSPAKVSMMEVN 302 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTF 359 E+ +++ V+ +++AIGR GQN+RLASQL+G+++++ ++ Sbjct: 303 EEHKYVNVYVKLEEISKAIGRGGQNIRLASQLTGYKIHIF--------RDFPYEDDVELT 354 Query: 360 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATI 417 +I+ + + G +T + + +L + L+E + + K Sbjct: 355 EFSDEIEPEVLERFHKVGLTTAKSVLNYRNNDLSKRTNLEEKIINKVVSILKKEFEEE 412 >UniRef50_UPI0001C373AB NusA antitermination factor n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373AB Length = 416 Score = 340 bits (872), Expect = 9e-92, Method: Composition-based stats. Identities = 102/342 (29%), Positives = 187/342 (54%), Gaps = 3/342 (0%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKY-EQEIDVRVQIDRKSGDFDTFR 60 N +E++ E ++ + + E ++SA+ A K+ Y E +RV+ID K+ F+ F Sbjct: 4 NNAFFKALESLGEENSVETDLLIEKVKSAMLKAAKRAYPHSEDRIRVEIDPKTKKFEMFI 63 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 ++D+ E+ ++ AR D + +G + +I+ R+ +AKQ I +RE Sbjct: 64 VQDIIDDYPIDENEVNIDVARTIDPNAIVGGTILKEIDISKLGRMAALSAKQSIKGDLRE 123 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRD-NISLDLGNNAEAVILREDMLPRENFRPGDRV 179 R ++ +F + E E IT V +V + E + R + +P E G V Sbjct: 124 INREQMLGKFEQKEHECITAKVSQVEPGRGTVTVVYEGTELYLFRNEQIPGETLEEGQSV 183 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 + + + + + + ++R+ +++ LF +EVPEI + +E+K+ +R+ GSR KIAV Sbjct: 184 KVYITGIIGKNKKPVVKISRTHKDLVKRLFELEVPEIYDGTVEVKSISREAGSRTKIAVW 243 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS-IVV 298 + D +D VGAC+G + +R+ A+ EL GE+IDI+ W + +F+ A+APA+V IV Sbjct: 244 SKDPNVDAVGACIGAKRSRITAIVNELNGEKIDIIPWSEKTEEFIARALAPAEVLKTIVT 303 Query: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 E+++T + V L+ AIG GQN +LA++L+G+++++ Sbjct: 304 SEEENTCTVIVPNNQLSLAIGNKGQNAKLAAKLTGFKIDIKP 345 >UniRef50_A6DKQ2 Transcription elongation factor NusA n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DKQ2_9BACT Length = 413 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 124/417 (29%), Positives = 235/417 (56%), Gaps = 6/417 (1%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E++A+VE + EKA+ + +F+ +E A+A+ +K+ +E +++V+I+R++GD Sbjct: 1 MNSELVAMVEYLEQEKAIDKAILFDLIEDAMASVYEKEVGEESEIKVEINRRTGDVTIIA 60 Query: 61 RWLVVDEVTQPTKEITLEAA-RYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 ++ +EV EI L +A + + + +GD V+ ++ RI Q +Q I+Q++R Sbjct: 61 DVVIAEEVFDKRHEIDLASAQKEYGDEVAIGDTVKWTLQQDQMSRIAAQNTRQAIMQRLR 120 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 E+ VV+++ + GE+I+G V+ ++ + +D G A+ + + D +PRE F GD + Sbjct: 121 TFEKERVVEEYSDMVGELISGTVRHFEKNELIVDFGR-AQGGLGKMDRVPRERFDNGDHI 179 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 +L + G + ++R+ +++ +LF EV EI ++EIKA AR G R KIAV Sbjct: 180 TALLKEIDERKSGPSIVLSRTDAKLVTKLFEREVTEITNGLVEIKAVARKAGFRTKIAVA 239 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 + +DPVGAC+G+RG+RV+ + EL E++DI+ + ++ ++V A P + + +D Sbjct: 240 S--DSLDPVGACIGIRGSRVKTICQELNNEKLDIIGYSEDEEEYVREAFKPNPIEEVEID 297 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNV-MTVDDLQAKHQAEAHAAIDT 358 +D + + V + +GR+G+N+RL +L W++ V V D + A T Sbjct: 298 QDGRLIKLLVSEESYKSIVGRDGENIRLTEELMDWDIEVEKYVYDTEITFDEHIQEAYQT 357 Query: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALA 415 K ++DE A ++++ G+ +LE ++ +L+E G++ + E AK+ L Sbjct: 358 MMKLPNMDEGKARMMIDGGYLSLEGVSEASTDDLVE-AGIEADHATEIIEYAKSRLQ 413 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 76/188 (40%), Gaps = 14/188 (7%) Query: 304 TMDIAVEAGNL---AQAIGRNGQNVR-LASQLSGWELNVMTVDDLQAKHQAEAHAAIDTF 359 IAV + +L IG G V+ + +L+ +L+++ + + ++ EA Sbjct: 233 RTKIAVASDSLDPVGACIGIRGSRVKTICQELNNEKLDIIGYSEDEEEYVREAFKPNPIE 292 Query: 360 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQ 419 +D D +LV E + + + + + E L + +E + + Sbjct: 293 EVEIDQDGRLIKLLVSE--ESYKSIVGRDGENIRLTEELMDWDIE-----VEKYVYDTEI 345 Query: 420 AQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAG 479 +E + + ++ L +D A + G +LE ++E DDL + G+ + A Sbjct: 346 TFDEHIQEA--YQTMMKLPNMDEGKARMMIDGGYLSLEGVSEASTDDLVE-AGIEADHAT 402 Query: 480 ALIMAARN 487 +I A++ Sbjct: 403 EIIEYAKS 410 >UniRef50_C4Z5N4 N utilization substance protein A n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z5N4_EUBE2 Length = 381 Score = 335 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 136/382 (35%), Positives = 223/382 (58%), Gaps = 15/382 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKE++ ++A+ E + +E +F A+E +L K ++++ + RV++DR++GDF + Sbjct: 1 MNKELIMALDALEKENGIDKEIMFAAIEKSLMDEYKAEFDKADNGRVELDRRTGDFHIYS 60 Query: 61 RWLVVDEVTQPTK------------EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQ 108 VV+EV P +I LE AR LGD + +++S F R + Sbjct: 61 DRTVVEEVIVPENRENKKEKYVSGTDIALEDARKIKPDCQLGDVITVEVKSEEFSRKAAK 120 Query: 109 TAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKV-NRDNISLDLGNNAEAVILREDM 167 AK IVQ +RE E+ + +++ E E+ITG+V++V + ++++DLG + V+ +D Sbjct: 121 NAKNTIVQTIREQEKNALYNEYHSKEKELITGIVQRVADNGDLTIDLGR-LQTVLKADDK 179 Query: 168 LPRENFRPGDRVRGVLYSV-RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 + F PGDR++ + V E G + V+R E++ +LF EV EI + V+EI Sbjct: 180 FKDKKFVPGDRIKLYVVDVINREKGGPVVRVSRKSQELVKKLFEEEVTEIKDGVVEIMGI 239 Query: 227 ARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVIN 286 AR+ GSR K+AV+ N +DPVGACVG+ GARV+A+ ELG E+IDI+ WD N AQ ++N Sbjct: 240 AREAGSRTKMAVRANVANVDPVGACVGINGARVKAIVNELGNEQIDIIEWDSNSAQLIVN 299 Query: 287 AMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA 346 A++PA V S V D+++ I V L+ AIG+ GQNVRLA++L+G+ +++ + + + Sbjct: 300 ALSPAKVVSAVADDEEKKAKIVVSEQQLSLAIGKQGQNVRLAAKLTGYGIDIKSEAEPEE 359 Query: 347 KHQAEAHAAIDTFTKYLDIDED 368 + E L +DE+ Sbjct: 360 HTEEENLEEEYVEPSELSLDEE 381 >UniRef50_Q1Q1G4 Strongly similar to transcription elongation protein NusA n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1G4_9BACT Length = 357 Score = 334 bits (857), Expect = 4e-90, Method: Composition-based stats. Identities = 127/358 (35%), Positives = 212/358 (59%), Gaps = 34/358 (9%) Query: 1 MNKE-ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTF 59 M+KE +L +V+++ +K + +E +F+ +E+AL TA KK + + V +QIDRK+G+ Sbjct: 1 MDKENLLRLVDSLHRDKEIAKEVVFQGIEAALITAAKKHFRSQEAVSIQIDRKTGEIVAM 60 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 GD +I+ RIT QTAKQVI+QK+R Sbjct: 61 E-----------------------------GDR---KIDPSELGRITAQTAKQVIIQKIR 88 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 EAER ++ + F + +G I++G V++ + ++LG E V+ + + E++ G+RV Sbjct: 89 EAERDVIFEDFCKRKGVIVSGKVQRFEGATMIVNLGK-TEGVLQKSEQTANEHYTIGERV 147 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 R V+ V+ ++ ++R+ P+ + +LF +EVPEI E IEIKA AR+ G R+KIAV Sbjct: 148 RAVILDVKKVGTRVKITLSRTHPDFVRKLFELEVPEIAENTIEIKALAREAGQRSKIAVA 207 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 ++D+ +D VGACVGMRG+R++ + EL GE+IDI+ W + P + NA+ PA+V+ I++ Sbjct: 208 SSDENVDCVGACVGMRGSRIKNIVDELNGEKIDIIRWSEEPELLLPNALKPAEVSGIILS 267 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 357 + T I V L+ AIG+ GQNVRLAS+L+ W ++++T + + + +A+ + Sbjct: 268 PENRTATIVVPNDQLSLAIGKRGQNVRLASRLTEWNIDIITDAEFEKRQKADDLELAE 325 >UniRef50_C9RKT3 NusA antitermination factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKT3_FIBSS Length = 407 Score = 334 bits (856), Expect = 5e-90, Method: Composition-based stats. Identities = 136/366 (37%), Positives = 200/366 (54%), Gaps = 15/366 (4%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 +L V++ V +K++ I +AL+ AL +A +K E + V ID ++ + F Sbjct: 8 NLLDVLKEVVEDKSVDDSVILDALKKALISAARKYLHIEKKINVDIDMETNEVHVFLNVE 67 Query: 64 VVDEVTQPTKEIT-------------LEAARYEDESLNLGDYVEDQIESVTFDRITTQTA 110 VVD+ +T ++ AR +E GD + ++ + +F R QTA Sbjct: 68 VVDDYPDYDPNMTAEEVAEMDEGYMLVDEARDFNEDAQAGDSLYMELPTSSFGRQAIQTA 127 Query: 111 KQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR 170 KQ++ Q +R AE ++D +R G II G V ++ + N+ +DLGN EA + + +P Sbjct: 128 KQLLTQHIRSAECQRIMDIYRSRIGTIINGTVLRLEQRNVIVDLGNKIEAELPAREQIPH 187 Query: 171 ENFRPGDRVRGVLYSVRPEAR-GAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARD 229 E G V+ V+ V + GAQ+ ++RS + L L R EVPEI E +EIKA ARD Sbjct: 188 ERLTQGASVKAVIARVEESTKSGAQVILSRSNADFLKALLRQEVPEIYEGTVEIKAVARD 247 Query: 230 -PGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM 288 RAKIAV + D++IDPVGACVGM+GARVQ + ELG ERIDIV WD+N FV ++ Sbjct: 248 SKNRRAKIAVYSRDEKIDPVGACVGMKGARVQTIVRELGNERIDIVHWDENFDVFVQRSL 307 Query: 289 APADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKH 348 APA V + D + I V+ NLAQAIG+ GQNV LA +L +L+V + Sbjct: 308 APASVLKMFPVPDTDRIVIIVDDENLAQAIGKGGQNVELAGRLVDRKLDVHGEQEWSQMD 367 Query: 349 QAEAHA 354 + + Sbjct: 368 EEAKNN 373 >UniRef50_D1AL29 NusA antitermination factor n=10 Tax=Fusobacteriaceae RepID=D1AL29_SEBTE Length = 358 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 127/350 (36%), Positives = 210/350 (60%), Gaps = 2/350 (0%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 L ++ + EK + +E++ EA+E+AL A KK Y ++ + V+I+ +G+ F R + Sbjct: 9 FLEALDELEKEKGIKKEELLEAVETALLAAYKKNYGEKENAEVKINHDTGEVKVFSRKEI 68 Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 VDEV P EI+L+ A+ + +G VE +I + F R Q AKQ+++QKVRE E+ Sbjct: 69 VDEVENPEYEISLDDAKNFKKRAKVGGVVELEINAEDFKRNAIQNAKQIVIQKVRECEKQ 128 Query: 125 MVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLY 184 + + F+E E I+TG+V+KV+ N EA+I +++ + F+ GDRV+ + Sbjct: 129 NIYNNFKEKENSIVTGIVRKVDEKGSLYIDINGLEAIIPEKELSDTDVFKQGDRVKVYIG 188 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 244 V + + F++R EM+ +LF +E+PEI + VI IK+ AR+ GSR K+A+ ++D Sbjct: 189 KVEEGTKFTKTFISRKSEEMIRKLFDLEIPEIEDGVIVIKSVAREAGSRTKVAIYSDDPN 248 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED--K 302 +D GAC+G G R+Q++ EL GE+IDIVLW+++ FV NA+ PA+V S+ + ED + Sbjct: 249 LDVKGACIGKGGMRIQSIIDELKGEKIDIVLWNEDIRYFVKNALNPAEVISVEIIEDNGE 308 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 352 + V + L+ AIG+ GQN RLA++L G ++++ T + E Sbjct: 309 EVAKVEVASDQLSLAIGKKGQNSRLAAKLCGIKIDIFTSELPDDSEPEEE 358 >UniRef50_B0VFB8 Transcription elongation factor NusA n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFB8_9BACT Length = 411 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 108/412 (26%), Positives = 226/412 (54%), Gaps = 4/412 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M+ +L + ++ K L ++ I + A+ + +K+ E E ++V ID +G Sbjct: 1 MSANMLDALNKLAAIKQLNKDTIQTIILEAVTSTLQKRLEPEAGLQVYIDELAGCVKVKF 60 Query: 61 RWLVVDEVTQPTKEITLEAARY-EDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 + LVV+ + +I+L AR ++ LG+Y+E + F+ +T +++I K+R Sbjct: 61 KSLVVER-EEGLGQISLIDARNDYYHNVQLGEYIEKTMTLSEFEPKIVKTVQKIIQDKIR 119 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 + E + + F + + I+TG +K ++ + + +A++ ++ + E +R GD + Sbjct: 120 QLEEEKIQNDFNKQKHTIVTGKIKAIDDYGGYIIDTGHVDALLPVDEQIENEFYRVGDNI 179 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVK 239 + + ++R + G + ++R+ PE + +LF E+P I I+I+ R+PG R K+ ++ Sbjct: 180 KAYVVNIRTQKDGVVIILSRTNPEFVKKLFEAEIPAIFSGEIKIRKIVREPGIRTKVELE 239 Query: 240 TNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299 D ++DP+ ACVG +G R+ ++ EL GE+IDIVL D+P + + NA+ + +++ Sbjct: 240 AEDPKVDPIVACVGPKGTRIDSLRKELHGEQIDIVLHSDDPEKMIENALGVEGIKRVII- 298 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTF 359 E H+ + ++ + AIG+ G+NV+LA++L G ++++ T+ + + K E + Sbjct: 299 ERNHSASVILDEADKLMAIGKQGKNVKLAAKLVGMKIDIYTMAEFEEKMAKER-RTVSHI 357 Query: 360 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 411 T+ + A L + G+++++++ ++EL +EG+ + T E L+E AK Sbjct: 358 TELDGVTPKIAETLKQAGYTSVQDIYTASLEELCNLEGMGQKTAERLKEAAK 409 >UniRef50_D2NNU7 Transcription elongation factor n=12 Tax=Actinobacteridae RepID=D2NNU7_9MICC Length = 365 Score = 331 bits (848), Expect = 5e-89, Method: Composition-based stats. Identities = 118/380 (31%), Positives = 198/380 (52%), Gaps = 27/380 (7%) Query: 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV 65 L + A++ +++L E++F +E+AL A K+ R ID +G+F Sbjct: 9 LGALRALAKQRSLVMEELFTLVENALLLAYMKQPGAIKGSRAVIDHTTGEFVIL------ 62 Query: 66 DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM 125 A DE D +D F RI T +QV+ Q++R+AE A Sbjct: 63 --------------APELDEDNQKIDEFDD--TPNNFGRIAAATVRQVLSQRLRDAEDAS 106 Query: 126 VVDQFREHEGEIITGVVKK-VNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLY 184 V+ +F++ EG +++GV+++ N + +DLG EAV+ + +P E + G R+R L Sbjct: 107 VLGEFKDREGTLVSGVIQQGNNPRMVQVDLG-TVEAVLPSNEQVPGEKYPHGSRLRAYLV 165 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 244 R +G + V+RS P +++ LF EVPEI E ++ I + AR+ G R+KIAV + Sbjct: 166 EARRGPKGPSIVVSRSHPNLVLRLFEHEVPEISEGLVAINSIAREAGHRSKIAVSAKNPT 225 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV-DEDKH 303 I+ GAC+G GARV+AV+ EL E+IDIV + +PA F+ A++PA V +++ + ++ Sbjct: 226 INAKGACIGDMGARVRAVAAELNDEKIDIVDYSTDPATFIAAALSPAKVTEVIIANPREY 285 Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363 + V L+ AIGR GQN RLA++L+GW +++++ E AA + L Sbjct: 286 SARAVVPDDQLSLAIGREGQNARLAAKLTGWRIDILSESKYAQVRAEEEVAAR--VARSL 343 Query: 364 DIDEDFATVLVEEGFSTLEE 383 + + E + ++ Sbjct: 344 AEEASAEKAIEEATEESAQD 363 >UniRef50_P0A5M3 Transcription elongation protein nusA n=50 Tax=Actinomycetales RepID=NUSA_MYCBO Length = 347 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 120/347 (34%), Positives = 197/347 (56%), Gaps = 31/347 (8%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN ++ A + A+ ++ + ++ E ++SAL TA + + D R++IDRK+G Sbjct: 1 MNIDM-AALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVI- 58 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 AR DE+ NL +D F RI TA+QV++Q+ R+ Sbjct: 59 -------------------ARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRD 97 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDN----ISLDLGNNA---EAVILREDMLPRENF 173 AE +F EGEI+ GV+++ +R N + + +G E VI + +P E++ Sbjct: 98 AENERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESY 157 Query: 174 RPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSR 233 G+R+R + V AR + ++R+ P ++ +LF +EVPEI + +EI A AR+ G R Sbjct: 158 EHGNRLRCYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHR 217 Query: 234 AKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADV 293 +KIAV++N ++ GAC+G G RV+ V +EL GE+IDI+ +DD+PA+FV NA++PA V Sbjct: 218 SKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKV 277 Query: 294 ASI-VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 S+ V+D+ + V L+ AIG+ GQN RLA++L+GW +++ Sbjct: 278 VSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIR 324 >UniRef50_B3SFF1 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SFF1_TRIAD Length = 348 Score = 328 bits (841), Expect = 4e-88, Method: Composition-based stats. Identities = 138/342 (40%), Positives = 217/342 (63%), Gaps = 12/342 (3%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 EIL V EAV+ +K + +E I EALE A+A A K+KY I V+ I+R G+ + +R Sbjct: 8 GNEILHVAEAVARDKGISKESIIEALEEAMAIAAKRKYGANIKVKAHINRNLGNIELYRE 67 Query: 62 WLVV----------DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAK 111 LVV DE + K I + A+ D +N GD ++ + + R+ +AK Sbjct: 68 VLVVKDGFISDNTRDENNEEVKTIEISKAQETDPDINEGDVIKQILPPLEIGRLNAISAK 127 Query: 112 QVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRE 171 Q+I+ KV+E E+ V ++++ GE++ GVV+K+ + LG +AEA++ ++ L + Sbjct: 128 QIIINKVKELEKDKVFEEYKNRVGEVLNGVVEKIETGGYIVKLG-SAEAILKKDQTLKTD 186 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 ++ GDR+R L + E+ G L ++R+ + +I+LF+ EVPEI + +IE+K ARDPG Sbjct: 187 FYKLGDRIRACLAKLDKESNGPILILSRTHKDFVIQLFKQEVPEIYDRIIEVKNIARDPG 246 Query: 232 SRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM-AP 290 SR KIAV ++D IDPVG+CVGMRG RVQA+ EL GE+IDIV W D+PA FV+N++ + Sbjct: 247 SRTKIAVYSSDPSIDPVGSCVGMRGVRVQAIIKELKGEKIDIVKWSDDPATFVVNSLGSS 306 Query: 291 ADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLS 332 V+ +++DE+++ ++I V + +QAIGR GQN++L S+L Sbjct: 307 IRVSKVIIDEEQNKIEIIVPEEDQSQAIGRRGQNIKLISELV 348 >UniRef50_B7K5I0 NusA antitermination factor n=9 Tax=Cyanobacteria RepID=B7K5I0_CYAP8 Length = 412 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 122/390 (31%), Positives = 211/390 (54%), Gaps = 28/390 (7%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKK----------YEQE--IDVRVQIDRKSGD 55 ++E +S LP+ + EAL AL ++ + ++ + V++D + Sbjct: 12 MIEEISQLHNLPKSAVQEALREALLKGYERYRRSQNLERQAFHEDYFDNFEVELDTEEEG 71 Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIES--VTFDRITTQTAKQV 113 F +V+ V I+LE + LGD V + F R+ KQV Sbjct: 72 FRILSTKKIVEAVENTDHFISLEEVQEVASEAQLGDEVVLDVTPNQKDFGRMAAIQTKQV 131 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNN-----AEAVILREDML 168 ++QK+R+ +R ++ ++F E EG ++ V + R + + + + EAV+ + + L Sbjct: 132 LLQKLRDQQRKLIQEEFNEIEGTVLNARVLRFERQDAIVAVQSTFGQPEVEAVLPKREQL 191 Query: 169 PRENFRPGDRVRGVLYSVRPEA-RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAA 227 P +N+R + +L VR + RG QL V+RS ++++LF +EVPEI EE++ I A + Sbjct: 192 PNDNYRANATFKVLLKKVREGSHRGPQLIVSRSAAGLVVDLFTVEVPEIEEEIVRIVAVS 251 Query: 228 RDP-------GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNP 280 R+ G R KIAV T ++ +DPVGAC+G RG+R+QAV EL GE+ID++ W +P Sbjct: 252 REANPPSRHVGPRTKIAVDTLERDVDPVGACIGARGSRIQAVVNELRGEKIDVIRWSPDP 311 Query: 281 AQFVINAMAPADVASIV-VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 A ++ NA++PA V +++ ++ D+ + V L+ AIG+ GQNVRLA++L+GW++++ Sbjct: 312 ATYIANALSPARVDNVILINPDERHALVLVAEDQLSLAIGKEGQNVRLAARLTGWKIDIK 371 Query: 340 TVDDLQAKHQAEAHAAIDTFTKYLDIDEDF 369 QA+ + + HA T L+ D + Sbjct: 372 DTATYQAEVEQKKHAQNQTAIDPLEEDPNL 401 >UniRef50_Q0I7K4 Transcription termination factor NusA n=43 Tax=cellular organisms RepID=Q0I7K4_SYNS3 Length = 501 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 125/432 (28%), Positives = 209/432 (48%), Gaps = 33/432 (7%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKK------------YEQE--IDVRVQID 50 + ++E +S EK L + + AL AL ++ +++E + V +D Sbjct: 9 LSNLIEDISEEKKLAPQVVEAALREALLKGYERYRRTLYLGISEDPFDEEYFSNFDVALD 68 Query: 51 RKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESV--TFDRITTQ 108 + ++VDEV +I L E GD V + F R+ Sbjct: 69 LDEEGYRVLASKIIVDEVESEDHQIALAEVMQVAEDAQAGDTVVLDVTPEKEDFGRMAAA 128 Query: 109 TAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNN-----AEAVIL 163 T KQV+ QK+R+ +R M+ ++F + E ++T V + R +I + + + EA + Sbjct: 129 TTKQVLAQKLRDQQRRMIQEEFADLEDPVLTARVIRFERQSIIMAVSSGLGRPEVEAELP 188 Query: 164 REDMLPRENFRPGDRVRGVLYSVRPEAR-GAQLFVTRSKPEMLIELFRIEVPEIGEEVIE 222 R D LP +N+R + L V R G QLFV+R+ +++ LF EVPEI E + Sbjct: 189 RRDQLPNDNYRANATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVR 248 Query: 223 IKAAARDP-------GSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVL 275 I A AR+ G R K+AV + ++ +DPVGAC+G RG+R+Q V EL GE+ID++ Sbjct: 249 IVAVAREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELRGEKIDVIR 308 Query: 276 WDDNPAQFVINAMAPADVASIV-VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW 334 W +P+Q++ N+++PA V + VD + + V L+ AIGR GQNVRLA++L+GW Sbjct: 309 WSQDPSQYIANSLSPARVEVVRLVDPEGQHAHVLVPPDQLSLAIGREGQNVRLAARLTGW 368 Query: 335 ELNVMTVDDLQAKHQAE-AHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELL 393 ++++ + + I + + + L E + EE ++EL Sbjct: 369 KIDIKNSTEYDQTAEDAVVSELISQREEEEALQREAEERLAIEQAARAEE--DARLRELY 426 Query: 394 EIEGLDEPTVEA 405 + +E E Sbjct: 427 PLPEDEEGYTED 438 >UniRef50_Q2SSE3 Transcription elongation protein nusA, putative n=4 Tax=Mollicutes RepID=Q2SSE3_MYCCT Length = 558 Score = 320 bits (820), Expect = 8e-86, Method: Composition-based stats. Identities = 109/451 (24%), Positives = 212/451 (47%), Gaps = 10/451 (2%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 E+L ++ + EK + +E I L+ L A ++ Y+ + +++ I+ K+G + Sbjct: 4 GTELLESIKLIEKEKGISKESIINGLKEGLQKAYERFYDTDAIIKIDINEKTGSITMHQE 63 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIES-VTFDRITTQTAKQVIVQKVRE 120 VV+E+ EITL+ A+ ++ + +GD + IE F R+ +Q+ QK+RE Sbjct: 64 LKVVEELDDDWLEITLQKAKLQNPNAQIGDIIYKPIEFSEEFSRMVVNQVRQIFQQKIRE 123 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AERA + +QF EGE++ V +NR+N + N A + + + E F+ + + Sbjct: 124 AERARIYEQFISLEGEVVQAKVVGMNRENNYVLDINGTTAYLWKNKTINNEIFQINEIID 183 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 + V E++ +Q+ ++R+ P L +L EVPE+ ++EIK +R+PG R+K+AV T Sbjct: 184 VYIEVVEKESKLSQIAISRTAPAFLTKLIEREVPEVRMGIVEIKGVSREPGKRSKVAVVT 243 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 +++ ++P+GA +G+ G R+ +S L GE+ID++ W D+ ++INAM P V SI Sbjct: 244 HNQNVEPIGAIIGVGGNRINRISDILKGEKIDVIRWSDDQITYLINAMTPVKVISINKIG 303 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 D+ DI V L+ AIG+ G +L + L ++N+ + ++ T Sbjct: 304 DE--YDIVVPDSQLSLAIGKQGITAKLIASLLKNKINIFSYSIALKENMDILWNGDTTKQ 361 Query: 361 KYLDID-------EDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA 413 + +V + + ++ + + + Sbjct: 362 EVETNSYIPKTKISKKEEKIVNTIIKKPIKKKEENIIDVDALIAFQAEVEQEQDAKIYEE 421 Query: 414 LATIAQAQEESLGDNKPADDLLNLEGVDRDL 444 + + +K + ++ D ++ Sbjct: 422 INQELADDKVQPDSDKVKAIVNVIKNSDDEI 452 >UniRef50_O51740 Transcription elongation protein nusA n=21 Tax=Borrelia RepID=NUSA_BORBU Length = 482 Score = 316 bits (811), Expect = 9e-85, Method: Composition-based stats. Identities = 111/430 (25%), Positives = 219/430 (50%), Gaps = 16/430 (3%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDE 67 ++ ++N++ + + I + ++ ++ A KK + + ++ D +GD + + +V E Sbjct: 8 MIVNIANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKE 67 Query: 68 VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVV 127 V EI + E++ GDY +I FDR++ Q AKQ ++ E ++ Sbjct: 68 VKDSLLEILEKDISK--ENIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEIL 125 Query: 128 DQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVR 187 +F+ +++ G V++ ++ ++LGN + +I ++ PRE + D++R ++Y+V+ Sbjct: 126 SEFKSKLNKVVIGYVQQNRNGDLYVNLGN-TDGIIPKKYQSPREVYNLNDKIRVLVYNVK 184 Query: 188 PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDP 247 G ++ ++R+ P+ + EL +E+PEI E +I+I RDPG R K+AV + + IDP Sbjct: 185 KGKNGIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDP 244 Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDEDKHTMD 306 VG C+G +G R+Q++ EL GE+IDI+ + + +F+ +++ P+ + + ++DED H Sbjct: 245 VGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKAL 304 Query: 307 IAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDID 366 + V L+ AIG+ GQNVRLA++L W ++V T D Sbjct: 305 VVVSDDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEM----FD 360 Query: 367 EDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLG 426 + V+ EE F + +++ ++ LD + L + + + QA E L Sbjct: 361 KVMQDVVEEEQFEEISKISD--------LKLLDPSVISNLSKEGFDDINNFLQADEGVLF 412 Query: 427 DNKPADDLLN 436 + + + Sbjct: 413 NLGVSYEKQE 422 >UniRef50_C7NAM6 NusA antitermination factor n=6 Tax=Fusobacteriaceae RepID=C7NAM6_LEPBD Length = 414 Score = 316 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 130/390 (33%), Positives = 216/390 (55%), Gaps = 10/390 (2%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 L ++ + EK + +E++ E +E+AL A KK Y ++ +V+V I+R SGD F + L+ Sbjct: 9 FLEALDELEKEKGILKEELLETIETALLAAYKKNYGEKDNVKVTINRNSGDVKVFSQRLI 68 Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 V+ V P +EI+LE A + LGD ++ +I + +F R Q AKQ++VQKVRE E+ Sbjct: 69 VENVENPDEEISLEDAISVKKRAKLGDILDLEINAESFKRNAIQNAKQIVVQKVRECEKR 128 Query: 125 MVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLY 184 + ++F+E E I++ V+K + N EA++ +++ P +NF +RV+ + Sbjct: 129 NIFNKFKEIENSIVSANVRKTDEKGNLYIDINGLEAIVPFKELSPTDNFVQNERVKIYVG 188 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKR 244 +V + + FV+R E+L L +EVPEI E++IEIK AR+ GSRAK+AV + D+ Sbjct: 189 NVEESTKFTKTFVSRKSEELLRGLLELEVPEIEEKIIEIKNIAREAGSRAKVAVYSEDEN 248 Query: 245 IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV----DE 300 +D GAC+G G R+Q + EL GE+IDIVLW+++ +FV NA+ PA+V + + +E Sbjct: 249 LDVKGACIGRNGMRIQNIIDELRGEKIDIVLWNEDIREFVKNALNPAEVLLVEIVEGEEE 308 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360 + + V L+ AIG+ GQN RLA++L G ++++ T Sbjct: 309 NTKIAKVLVAENQLSLAIGKKGQNSRLAARLCGVKIDIHTEP------FEIEQNDEYELE 362 Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMK 390 + + L E F ++ + Sbjct: 363 EETAFHNSVESDLEESEFENIDNADEAEIS 392 >UniRef50_D1AY66 NusA antitermination factor n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AY66_STRM9 Length = 362 Score = 310 bits (795), Expect = 8e-83, Method: Composition-based stats. Identities = 100/340 (29%), Positives = 186/340 (54%), Gaps = 5/340 (1%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 L +E + EK + + + E L++ L A KK + + ++ ++ID+ +GD F L+ Sbjct: 9 FLDAIEELEKEKGIQKGDLLERLKTGLLAAYKKDFNDQENLEIEIDQITGDVKMFCEKLI 68 Query: 65 VDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 +D+ V T EI A+ + + +GDY++ ++ + F+R Q AK +I+Q +RE Sbjct: 69 IDDEVKVYNETTEIPFSKAKNHRKRIKVGDYLKIELNADEFNRNAIQRAKSIIIQYIREQ 128 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181 E+ ++ Q E +I+ +V+++ + N + +I + ++ + + GDR+ Sbjct: 129 EKELICKQLTAIEHQIVNVIVRRIEENGSLYVGMNGLDLIIPQRELSSLDKVQVGDRLVA 188 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241 + SV R ++ +TR +++ +LF EVPEI +I IK AR+ G +AK+A+ + Sbjct: 189 YIRSVDTNGRFPKVDITRIDDKLIHKLFEREVPEIASGIIVIKNIAREVGVKAKVAIYSE 248 Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV--D 299 D ID G+C+G G R+ + EL GE+I++V W+ + FV NA+ PA++ S+ + + Sbjct: 249 DPNIDLKGSCIGKDGVRINNIINELNGEKIELVEWNADQRIFVKNALYPAEIFSVEIVRN 308 Query: 300 EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 ED+ + V+ L AIG+ G N +LA +L +N+ Sbjct: 309 EDEIVAKVEVDPSQLTLAIGKKGVNSKLAGKLCKLRVNIE 348 >UniRef50_A6DBC4 Transcription elongation factor NusA n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBC4_9PROT Length = 356 Score = 307 bits (788), Expect = 4e-82, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 187/354 (52%), Gaps = 9/354 (2%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++I ++ V+NEK L E++ EA + ++ KK D+ V ++ + ++ + Sbjct: 2 EKIQDLLSLVANEKGLDFEEVKEAFKRSIIKTAKKILG---DIDVDVEMEDKKLKIYQNF 58 Query: 63 LVVDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 VV++ + +P K + L+ AR DE+ +GD + +++ R ++ +++ Sbjct: 59 TVVNDDRALNEPEKYLYLDEARDFDENAQIGDKLRAELDLSKLGRSGAMALQREFEREIT 118 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRD-NISLDLGNNAEAVILREDMLPRENFRPGDR 178 + + I++G V KV+ D N ++L + V+ R + + E F+ GD Sbjct: 119 RLLENEIYRKLISKLNTIVSGEVIKVDNDENTYVEL-DGVRGVLPRRNRIKGEKFKVGDV 177 Query: 179 VRGVLYSVR-PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 ++ +L V +G + ++R+ P+ L +L VPE+ + +I+I +AR PG R+K+A Sbjct: 178 LKALLKYVHFDNKKGITIELSRTSPKFLEKLIENAVPEVRDGLIKIHTSARIPGVRSKVA 237 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V + + +IDP+G +G G R+ A+S EL GE ID++ + P FV A++PA V S+ Sbjct: 238 VSSLNPKIDPIGTIIGKNGVRINAISNELAGENIDVIEYSPQPEIFVARALSPAIVKSVK 297 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAE 351 +DE + V+ A+AIG+NG N+ LAS L+ +++ + + + + E Sbjct: 298 IDEKNGIAYVDVDPSEKAKAIGKNGVNITLASMLTKYKIELKSQEKSTDTSKLE 351 >UniRef50_A9NF09 Transcription termination factor n=16 Tax=Acholeplasmataceae RepID=A9NF09_ACHLI Length = 358 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 92/354 (25%), Positives = 186/354 (52%), Gaps = 8/354 (2%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 ++K +E V+ + L +E++F A E L A KK+ + RV+ + + + Sbjct: 2 ISKAFFQNIEEVAEDNDLNKEQVFHAFEQGLIAACKKQLGVQT-CRVEFKEEKHELLIYG 60 Query: 61 RWLVVDE------VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 ++ V+ E + + + LE A+ +S G+ +E +IE F ++ K Sbjct: 61 QYYVLPEGELNLELDKKYTFLKLEDAKALKKSAKAGEILEVKIEPSEFSYNASRDLKHRF 120 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR 174 + + + ++ + ++ + E++T V + +D +++ + ++ +++ LP + F Sbjct: 121 NEVLNQIKKENIYQGLKDLQYEMVTARVLEEEKDFYRIEINKDVITMLPKKEALPTDKFH 180 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 GDR++ + V + +G +++V+R+ ++ L VPEI + IE+ ARDPG R+ Sbjct: 181 VGDRIKVYVTDVEMKTKGPKIYVSRTHVALVTRLLEEYVPEIKDGTIEVLGIARDPGDRS 240 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA 294 K+ +K+N++ +D +GA VG G R++ +S L GE+ID+ W DN + + N++ PA V Sbjct: 241 KVGLKSNNENVDVIGATVGEGGVRIKEISKFLSGEKIDLFRWSDNEQELIGNSLQPAPVV 300 Query: 295 SIV-VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK 347 ++ V+ + + V L+ AIG+ GQNV+LA Q SGW +++ + + Sbjct: 301 AVTRVNPKEKSALAIVPDAQLSLAIGKLGQNVKLAVQASGWSIDIKSETTAAEE 354 >UniRef50_B9L7T5 Transcription termination factor NusA n=1 Tax=Nautilia profundicola AmH RepID=B9L7T5_NAUPA Length = 357 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 187/353 (52%), Gaps = 9/353 (2%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 +++L ++ V+NEK L +++ EA + ++ KK D+ V++D ++G+ ++ + Sbjct: 2 EKVLDLLSLVANEKGLDFDEVKEAFKRSIIKTAKKVLG---DIDVEVDIENGELKIYQIF 58 Query: 63 LVVDE---VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 V ++ + +P K L+ AR D + +GD ++ +++ R ++ +++ Sbjct: 59 EVRNDDVALEEPEKYFYLDEAREFDPNAQIGDKLKVELDLGKLGRSGAMALQREFEREIT 118 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVN-RDNISLDLGNNAEAVILREDMLPRENFRPGDR 178 + + I++G V KV+ +N ++L + V+ + + E F GD Sbjct: 119 RLLENEIYRKLISKLNTIVSGEVVKVDSEENTWVEL-EGVKGVLPMRNRIKGEKFEVGDV 177 Query: 179 VRGVLYSVR-PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 ++ +L V RG + ++R+ P+ L +L VPE+ + +I+I +AR PG R+K+A Sbjct: 178 MKALLKYVHFDTNRGITIELSRTNPKFLEKLIESAVPEVRDGIIKIHTSARIPGVRSKVA 237 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V + + +++P+G +G G R+ +VS EL GE ID++ + P F+ A++PA V ++ Sbjct: 238 VSSLNPKVEPIGTIIGKNGVRINSVSNELNGENIDVIEYSPKPEIFIARALSPAIVKNVQ 297 Query: 298 VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA 350 VDEDK + V+ A+AIG+NG N+ LA L+ +++ + ++ Sbjct: 298 VDEDKALAVVEVDPDQKAKAIGKNGINITLAGMLTKYKIELKDAEEKSKDTSK 350 >UniRef50_A7I0Q5 Transcription termination factor NusA n=2 Tax=Campylobacter RepID=A7I0Q5_CAMHC Length = 366 Score = 300 bits (769), Expect = 6e-80, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 184/367 (50%), Gaps = 9/367 (2%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++I ++E+++NEK L ++ E ++ A KK + ++ QID S F++ Sbjct: 2 EKITDIIESIANEKGLEEAEVSEKVKIAFIQTAKKIFGEDFVYESQIDPVSKKIKLFQKV 61 Query: 63 LVV------DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQ 116 VV + ITL+ A+ D ++ +GD + I R +Q + Sbjct: 62 SVVANDFVLKDGLNEQNFITLDKAKKIDPTIEIGDEISYDINLEKIGRTASQILFNELNY 121 Query: 117 KVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPG 176 ++ ++ + E GE++ G V V+R+ + ++ +A + ++ + E F G Sbjct: 122 HIQRLLEEKILKHYNEKIGELVHGSVTGVDREQTTYVEVDDIKAYLPMKNRIKDEKFEVG 181 Query: 177 DRVRGVLYSV-RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 D + V+ V + +G ++ ++R+ P+ L L + EVPEI + + +KA AR PG RAK Sbjct: 182 DIINAVIRHVFIDKNQGIKIELSRTSPKFLEALLKAEVPEIKDGSVILKACARIPGKRAK 241 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 IA+ IDPVGA VG +G R+ AVS EL E ID++ W + P V AM+PA S Sbjct: 242 IALSAISPNIDPVGATVGTKGVRINAVSAELKKENIDVIEWSNQPEILVARAMSPAIANS 301 Query: 296 IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAA 355 + + ED + + ++AIG++G N+RLAS L+G ++ ++ + + ++ Sbjct: 302 VKISED--KAIVYINPAQKSKAIGKSGLNIRLASMLTGLQIELVETGESKKTNEEAMQDL 359 Query: 356 IDTFTKY 362 + F Sbjct: 360 KNLFGDL 366 >UniRef50_Q8EWU2 N-utilization substance protein A n=1 Tax=Mycoplasma penetrans RepID=Q8EWU2_MYCPE Length = 597 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 108/455 (23%), Positives = 217/455 (47%), Gaps = 32/455 (7%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 K L ++ ++ EK +E I L++AL + K+ ++D+ V +D F + Sbjct: 4 KSFLENLDKIAKEKDTSKENIVNILKTALEKSYLKE-NPDLDIEVVVDLNKESIKLFEKR 62 Query: 63 LVV---DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 +VV ++ KEI + A+ +S LGD V ++ F+R T Q++ + Sbjct: 63 VVVDKSEDEIDDDKEINISEAQELKKSYKLGDTVSTEVNIDKFERRITSHFAQILTHNLN 122 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV 179 + + V +++++ G II V+KV+ + ++LG + + V+LR + +P E +PG Sbjct: 123 DISNSKVYEEWKDKVGNIIRAEVEKVDNRLVEVNLG-STKGVVLRSEQIPGEELQPGQSY 181 Query: 180 RGVLYSVR-PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 ++ V+ + +G + ++R+ +L L + E+ EI + +IEIK +R G + K+A+ Sbjct: 182 LFLIKEVKSQQTKGWPIILSRADEGLLRYLLKTEISEISDGIIEIKRISRIVGYKTKVAI 241 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298 + +D VG VG +G R++ +S+ L ERID++L+D++P QF++NA P + + + Sbjct: 242 LSRVPGVDAVGTAVGPKGERIKKISSTLNNERIDVILYDEDPKQFLVNACHPEKIVGVEI 301 Query: 299 DEDK-----HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAH 353 +D+ + I +L + IG+NG NVRL S+L+GW +++++ Sbjct: 302 TDDEDIPGSKIVTIVCPEESLIKLIGKNGINVRLLSKLTGWSIDIISEKLAIEDKIEFED 361 Query: 354 -------AAIDTFTKYLDIDEDFATVLVE------------EGFSTLEELA-YVPMKEL- 392 +++ + A GFS+ + + + + Sbjct: 362 VSQLVSSKTRQPRSQFGGYRLNNANNKKSTSNKPGSKPNFYSGFSSDDSIETDFDIDQYK 421 Query: 393 LEIEGLDEPTVEALRERAKNALATIAQAQEESLGD 427 E++ + + VE L N+ + + Q E + Sbjct: 422 AELDSITDDDVEQLLNTNTNSSSRKNKKQIEDDEE 456 >UniRef50_B1VGB9 N utilization substance protein A n=2 Tax=Corynebacterium RepID=B1VGB9_CORU7 Length = 332 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 106/355 (29%), Positives = 186/355 (52%), Gaps = 32/355 (9%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN + LA + A+ ++ +P +++ A+ + L A + + +V VQID SG ++ Sbjct: 1 MNID-LATLRAIERQEGVPVDELIHAIANGLKEAYRNQSAFAGEVDVQIDPTSGAVAIYQ 59 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 DE N+ +++ FDR T ++ I +++ Sbjct: 60 V--------------------ERDEEGNVTGRLDE--TPENFDRTTALAMREAIRRRIGG 97 Query: 121 AERAMVVDQFREHEGEIITGVVKK----VNRDNISLDLG---NNAEAVILREDMLPRENF 173 A D++ I++GVV + R + +G + + IL + +P E Sbjct: 98 ARVQQRYDEYSSIRHTIVSGVVTRDARANERGITVVHIGTEADGIDGQILPAEHIPGEVL 157 Query: 174 RPGDRVRGVLYSV-RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 232 + G RV+ + V + R Q+ ++R+ PE++ LF +EVPE+ + +EI + AR+ G Sbjct: 158 KHGTRVKAFVTDVIKHADRNVQISLSRTHPELVRGLFELEVPEVADGSVEIMSIAREAGH 217 Query: 233 RAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPAD 292 R KIAV+ K ++ GAC+G RG RV A+ ELGGE+IDI+ + D+PAQ+V NA++P+ Sbjct: 218 RTKIAVRATIKGLNAKGACIGPRGQRVSAIMAELGGEKIDIIDYSDDPAQYVGNALSPSK 277 Query: 293 -VASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA 346 V+S V+D ++ + V L+ AIGR GQNVRLA++L+ W++++ + + Sbjct: 278 YVSSTVIDAEQQIARVVVPDYQLSLAIGREGQNVRLAARLTCWKIDIKSDAEQGE 332 >UniRef50_A6QCD2 Transcription termination factor NusA n=17 Tax=Epsilonproteobacteria RepID=A6QCD2_SULNB Length = 387 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 113/385 (29%), Positives = 195/385 (50%), Gaps = 19/385 (4%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++IL +++A+++EK + RE EA + AL KK + V ID + + + Sbjct: 2 EKILDIIDAIAHEKNISREHALEAFKEALVNTAKKLTSFTSNFEVTIDNDTKTYSVQKVI 61 Query: 63 LVVDEVTQ----------------PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRIT 106 +V + + + L A+ DESL +GD + ++ + R Sbjct: 62 TIVADDDEQLFVEVGKEDNKEMIPSDAVMPLSEAKEFDESLEIGDKLTEEFVLEDYGRTA 121 Query: 107 TQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVN-RDNISLDLGNNAEAVILRE 165 + + + ++ + +++RE G ++ G V +++ DN +++G + ++ Sbjct: 122 SANLFRELEYHIQRRIEQDLFEKYREKVGTVMLGTVNRIDADDNTHVEIGE-LKGILTLR 180 Query: 166 DMLPRENFRPGDRVRGVLYSVRPEAR-GAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIK 224 + + E F+ GD +R +L V + + G L +TR+ P+ L L EVPEI + V+EI Sbjct: 181 NRIKGEKFKRGDTIRALLRYVSVDPQYGLFLELTRTSPKFLEALMASEVPEIADGVVEIV 240 Query: 225 AAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFV 284 AAR PG RAKIA+KT +DP+GA VG++G R+ AVS EL GE ID + + P F+ Sbjct: 241 NAARIPGERAKIALKTEQMNVDPIGAAVGVKGVRINAVSEELNGENIDCIEYSPIPEIFI 300 Query: 285 INAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDL 344 A++PA SI VD+D+ + + A+AIG++G N+RLAS L+G+ + + V+ + Sbjct: 301 TRALSPAITQSIKVDQDEKKAVVNITGDQKAKAIGKSGINIRLASMLTGYTIELNEVEGV 360 Query: 345 QAKHQAEAHAAIDTFTKYLDIDEDF 369 + A TK ED Sbjct: 361 TERQPESAAGGEAEKTKDTSALEDL 385 >UniRef50_A8ERE7 Transcription termination factor NusA n=15 Tax=Epsilonproteobacteria RepID=A8ERE7_ARCB4 Length = 391 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 101/388 (26%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 +I+ ++++++ EK L + + +L+ AL ++ + + IDR + + F++ Sbjct: 3 KIIDILDSIAYEKGLKIDDVENSLKEALIKTAQRMVDTTLIFDANIDRANKKLELFQKIE 62 Query: 64 VVDEVTQ---------------PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQ 108 VV + P I+LE A+ + L++GD++ ++E R Sbjct: 63 VVSKDDDRLKEGSLTKEGTPINPENYISLEEAKEINSDLDIGDFMSYELEFENMGRNAAT 122 Query: 109 TAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNR-DNISLDLGNNAEAVILREDM 167 +++ +V +++E G+ ++G V ++++ DN +++G + ++ R+ Sbjct: 123 ILLSNFEFRLQRFVEENIVGKYKEKVGKTVSGTVTRIDKSDNTYIEIGE-IKGILQRKSR 181 Query: 168 LPRENFRPGDRVRGVLYSVR-PEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 + E F+ GD V+ V+ SV + G + ++R+ P+ L L +EVPE+ ++ I I+A+ Sbjct: 182 IKGEFFKVGDVVKAVVKSVNIDKTNGLLVEISRTSPKFLENLLVLEVPELKDKKIAIEAS 241 Query: 227 ARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVIN 286 AR PG+R+KIA+ T D +IDP+GA VG++G R+ +VS +L GE ID V + + P F+ Sbjct: 242 ARIPGTRSKIALSTIDAQIDPIGAVVGVKGVRIGSVSKQLNGENIDCVEYSEIPEIFISR 301 Query: 287 AMAPADVASIVV-----DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 A++PA V S+ + + +K + + + ++AIG+ G N+RLAS L+ +++ ++ + Sbjct: 302 ALSPAIVHSVKIEKNPENGEKGKAVVTIPSDQKSKAIGKAGLNIRLASMLTKYDIELIEI 361 Query: 342 DDLQAKHQAEAHAAIDTFTKYLDIDEDF 369 E + +D T E Sbjct: 362 GSKTPTLNNETNVQVDEKTTDTASLEAL 389 >UniRef50_Q7VGP8 Transcription termination factor NusA n=1 Tax=Helicobacter hepaticus RepID=Q7VGP8_HELHP Length = 375 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 99/373 (26%), Positives = 186/373 (49%), Gaps = 12/373 (3%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++IL +++ ++ +K L + + E ++ L +++ D V+ D K F R Sbjct: 2 EKILDIIDLIAYDKGLESQAVLEIVKEGLIKIAQEEINPHYDYFVEQDAKERTLKLFYRM 61 Query: 63 LVVDEVTQPTKE-----ITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 V + ++E + L A+ +++GD V+ +++ R + Sbjct: 62 KVCADEQDLSEENLGTFLPLSQAKGLG-DVSIGDEVDCELQLDAMSRGAINKLFLNLEYN 120 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNR-DNISLDLGNNAEAVILREDMLPRENFRPG 176 ++ + ++ FR G+I+ G V ++ N +++ + A++ +++ + ENF+ G Sbjct: 121 LQRSIENQILQNFRAMVGKIVNGQVVGIDDSGNTFIEI-ESIRAILPQKNRIKGENFKVG 179 Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 D VR +L V G Q+ ++R+ P+ L EL +EVPEI + + I +AR PG RAK+ Sbjct: 180 DCVRAILKFVGINRNGLQVELSRTTPKFLEELLAMEVPEIKDNEVIIHKSARIPGDRAKV 239 Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296 AV +N RIDP+G CVG++G R+ AVS EL E ID V + FV A+ PA V S+ Sbjct: 240 AVYSNSARIDPIGCCVGVKGVRINAVSKELANENIDCVEYHSTLEIFVAKALTPAQVVSV 299 Query: 297 VVDE----DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 352 ++E ++ + +++ ++AIG+NG N+RLAS L ++ + + + + Sbjct: 300 KIEEAQEGERKKAIVQIKSEQKSKAIGKNGVNIRLASMLCECDIELQEITESKPLENENT 359 Query: 353 HAAIDTFTKYLDI 365 A + Sbjct: 360 PAEKTGIDALSSL 372 >UniRef50_C3XEZ2 Transcription termination factor NusA n=2 Tax=Helicobacter RepID=C3XEZ2_9HELI Length = 384 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 109/375 (29%), Positives = 198/375 (52%), Gaps = 11/375 (2%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++IL +VE +++E LP++++ A++ ++ KK+ + + V D + + ++ Sbjct: 2 EKILDIVEMIASENGLPQDQVVLAIKDSMVKMAKKEINENANFVVIEDWSAKELRLVQKM 61 Query: 63 LVVDEV----TQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118 +V D+ + I L AR E++N GD +E QI +R I ++ Sbjct: 62 IVCDDSSFSKDLESTHIPLNEARSLVENVNTGDELEYQINLEGMNRNAVNNIFHDITYQI 121 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNR-DNISLDLGNNAEAVILREDMLPRENFRPGD 177 ++ ++ F + G I+ G V V+ N S+++G A++ ++ + E F+ G Sbjct: 122 QKLNEQEILKAFEKDIGHIVIGQVVHVDDEGNTSIEIGE-TRAILSLKNRIKGEKFKVGQ 180 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 VR +L SVR G ++ ++R+ P++L EL +EVPEI + + I AR PG +AK+A Sbjct: 181 PVRSILKSVRITKNGVKIELSRTTPKLLEELLMLEVPEIKDGEVSIYKIARIPGEKAKVA 240 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 + TN+ +IDP+G+ VG RG R+ AVS EL GE ID + + P FV +++PA V S+ Sbjct: 241 LYTNNPKIDPIGSAVGARGVRINAVSKELHGENIDCIEYSSVPEIFVAKSLSPAQVISVK 300 Query: 298 V-----DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEA 352 + +E+K + + ++AIG+ G N+RLAS L+G++ + V D ++ Sbjct: 301 LQKADTEEEKPKAIVQIAKSQKSKAIGKAGVNIRLASMLTGYDFELQEVADKPSEQITTK 360 Query: 353 HAAIDTFTKYLDIDE 367 + K L ++ Sbjct: 361 DSTEKDEDKKLGLEA 375 >UniRef50_D1J8W2 Transcription elongation protein NusA n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8W2_MYCHP Length = 546 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 104/462 (22%), Positives = 204/462 (44%), Gaps = 31/462 (6%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 KEI + +S K + + ++ EA ++ + + Y++E D+ D+++ +F Sbjct: 23 KEIYKQIYNLSQIKKIDQAEVVEAFKNTVTKLITETYDEEADLEFIFDQENDNFAIINHN 82 Query: 63 LVVDEVTQPTK-----------EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAK 111 VV V P EI L A+ D ++ +GD + +I F + Sbjct: 83 KVV--VGDPITSEEKDRLTRCIEIPLSDAKKIDPNVEIGDSLSQEINFEYFSKKDYNKIL 140 Query: 112 QVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRE--DMLP 169 Q ++ ER M +++ G + VN+ ++L+L + A + + Sbjct: 141 ANFSQDIKNLERKMTCEKYASEVGNSTKAKIVSVNKGKVNLELRDGTLAFMPSNFVNQRI 200 Query: 170 RENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARD 229 PGD + V+ V+ E AQ+ V+ + +L +LF IE+PEI + +I I AR Sbjct: 201 ISKLNPGDWIDVVIEEVKEENSNAQIIVSSVESRLLQKLFEIEIPEISQGLISIVNIARI 260 Query: 230 PGSRAKIAVKTND---KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVIN 286 PG RAK+++K ++ + ++ +GA +G R+ +S +L GE+ID+VL+ D+ +++ N Sbjct: 261 PGERAKVSIKKSNDAPETMEEIGAIMGRDSERISTISRKLNGEKIDVVLYSDDIKEYIKN 320 Query: 287 AMAPADVASIVVDEDKH---TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDD 343 A++PA V ++ K+ + ++ V AIG+ GQNV LAS+L +L++++ + Sbjct: 321 ALSPAKVIDLIEVPSKNSYPSFNVIVPTIQHTLAIGKKGQNVSLASELVKAKLDILSQEQ 380 Query: 344 LQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPM-------KELLEIE 396 + + + +++ E + F + + + I+ Sbjct: 381 ADERGIEYNFENGNITKEEIELLES--GKKLHHSFKHPKTIGNKNATNKFNTFENSFNID 438 Query: 397 GLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLE 438 DE +R +A+ + + D L L Sbjct: 439 EFDEDLA-EMRRKAQQNDNIFERQMFSNSLDEDLERTLSELN 479 >UniRef50_Q83N21 N utilization substance protein A n=2 Tax=Tropheryma whipplei RepID=Q83N21_TROWT Length = 319 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 98/341 (28%), Positives = 175/341 (51%), Gaps = 32/341 (9%) Query: 6 LAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID--VRVQIDRKSGDFDTFRRWL 63 L+V+ AV E+ + + + E A+ A + E V+ +++RK+G+ D + Sbjct: 7 LSVLRAVEREQRVAFDDLVRIAEQAVVMAYLRHTGLEDADLVKAKLNRKTGEIDLRVKHD 66 Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 GD++ +S F R+ AK+VI K+R Sbjct: 67 --------------------------GDFI--PYKSDAFSRMAATAAKRVITSKMRTLSD 98 Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNI-SLDLGNNAEAVILREDMLPRENFRPGDRVRGV 182 +++ G +++GV+ + N + L EA++ E+ +P E + G V+ Sbjct: 99 DSTFARYKTKIGTVLSGVISQSTSQNFRMVSLDRRTEAILRPEEQIPGEEYPHGKMVKVY 158 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTND 242 + V RG+ ++V+R+ P ++ LF EVPEI +EI A +R+ G R K++V++N Sbjct: 159 VTDVTLGPRGSNVYVSRTHPGLINGLFLQEVPEIASGTVEIVAVSREAGHRTKVSVRSNS 218 Query: 243 KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI-VVDED 301 K VGACVG G RV+AV++E+ E+IDI+ + D+ Q+V NA++PA A + V+D Sbjct: 219 KSTSAVGACVGEYGCRVRAVTSEICNEKIDIISYSDDLGQYVANAISPATAADVFVLDSR 278 Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 + + + V + AIG+ GQN RLA++L+G ++++ + Sbjct: 279 QKVVRVYVSKEEYSLAIGKEGQNARLAARLTGAKIDIRIDE 319 >UniRef50_P75591 Transcription elongation protein nusA n=2 Tax=Mycoplasma RepID=NUSA_MYCPN Length = 540 Score = 287 bits (734), Expect = 9e-76, Method: Composition-based stats. Identities = 102/443 (23%), Positives = 196/443 (44%), Gaps = 18/443 (4%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 +L +++ V+ K L + + L++ALA KK ++V V ID G + + V Sbjct: 12 LLQLIKNVAETKNLAIDDVVLCLKTALAQTYKKHLN-YVNVEVNIDFNKGLMQIEQLFDV 70 Query: 65 VD---EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121 VD E E+ L A+ + +L +G + + + QK+ E Sbjct: 71 VDDNNEDYDDFLEMPLSEAKKLNPNLEVGGVLRKPVSLKDIKGDLISKMVLLFNQKINET 130 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRD------NISLDLGNNAEAVILREDMLPRENFRP 175 V+ F G++I V+ ++ + ++L + + + ++ E Sbjct: 131 AFKTVMSDFINEVGQVIEARVEDIDTNKDGGLKGYIVNL-ETTKGYMPKRELSKGEKLDI 189 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAK 235 G + V+ ++ ++ + ++RS +L L PEI IEIK R PG+++K Sbjct: 190 GKKYLFVIKEIQKQSSMWPITLSRSDSRLLEFLLNSNTPEIANGTIEIKKMERSPGTKSK 249 Query: 236 IAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS 295 +AV + D +DP+ A +G +G R++ +S E GE IDIV+W+++ +F++NA+ PA+V Sbjct: 250 VAVISKDPVVDPIAAILGPKGERIRGISEEFNGEIIDIVIWNEDKLKFLVNAVLPAEVVG 309 Query: 296 IVV---DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW-ELNVMTVDDLQAKHQAE 351 + DE +++I V A +A G G N+RL S L+GW ++V T D + Sbjct: 310 YNILQDDERDTSIEIVVPANQIANVFGFKGINIRLISNLTGWSSVDVYTEKDAAEQGIEF 369 Query: 352 AHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 411 + + + + ++LA + + +D+ + L ++A Sbjct: 370 TRVNFQPQGIFG--IKKRRDKISNNPRNNNQQLASDKVFYTSKANVVDDEIIVDLAKQA- 426 Query: 412 NALATIAQAQEESLGDNKPADDL 434 A QE + + + +L Sbjct: 427 EAKRVKQIKQEATKPELQLQQEL 449 >UniRef50_Q3B1Z7 NusA antitermination factor n=12 Tax=Chlorobiaceae RepID=Q3B1Z7_PELLD Length = 553 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 118/410 (28%), Positives = 202/410 (49%), Gaps = 29/410 (7%) Query: 22 KIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAAR 81 I + L+ + +K Y+ E++ + I+ + GDF+ + +V+EV EI+LE R Sbjct: 43 DIADLLKDIIQKQLRKDYDPEVEANIFINPERGDFEVYILKKIVEEVDIAPIEISLEEIR 102 Query: 82 YEDESLNLGDYVED-QIESVT-FDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIIT 139 DESL +GDY E+ I+ R + Q KQ + +KVR+ ER +V ++ E GE+I Sbjct: 103 RIDESLEVGDYYEEGPIKLDDYLTRKSIQIIKQSVQKKVRDLERMVVYEECLEKVGEVIA 162 Query: 140 GVVKKVNRDNISLDLG----NNAEAVILREDMLPRENFRPGDRVRGVLYSVRPE------ 189 V +V + + + E V+ + +M+ ++N R R++ + ++ E Sbjct: 163 AEVYQVRSNEVIFTYNTSKDHRVELVLPKSEMMKKDNPRRTPRMKLYVKNIERERVKVRL 222 Query: 190 -----------ARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238 G ++ V+R L +LF EVPEI + +I IK AR PG RAK+AV Sbjct: 223 DDGTMEEKEKADGGMKVIVSRVDDRFLYKLFEQEVPEILDGLIVIKGIARVPGERAKVAV 282 Query: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVA--SI 296 ++ RIDPVGA VG RG R+Q++ EL E ID++ + D P ++ A+ PA + ++ Sbjct: 283 ESTSARIDPVGATVGYRGKRIQSIVKELNNENIDVIYYSDEPQVYISRALQPAKIDPLTV 342 Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356 D + ++ + AIG+NG N+ LA +L+G+E++V E I Sbjct: 343 HADMKTRKARVMLKPDQIKYAIGKNGNNIHLAEKLTGYEIDVYRD---VIDRSMEDPTDI 399 Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEAL 406 D + +D L++ G T ++ ++E+ + L E + Sbjct: 400 DIIEFREEFGDDMIYQLLDAGLDTAKKALKAGVEEIEQAL-LGPQRQEEV 448 >UniRef50_Q6KIE0 N-utilization substance protein a n=1 Tax=Mycoplasma mobile RepID=Q6KIE0_MYCMO Length = 514 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 101/373 (27%), Positives = 188/373 (50%), Gaps = 22/373 (5%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDR-KSGD--FDTF 59 K+ +V + + L ++++ + L +A+ ++ + + I++ ++G+ + Sbjct: 15 KDFFELVGSRA---DLSQKEVMDTLLNAITLIFNNDFDPNAKLDLVIEKSETGESKIKLY 71 Query: 60 RRWLVVDEVTQPTKE----ITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 +V + +E + +E A+ + SL + +D+I +F + V Sbjct: 72 ILNKLVTDYDVEEEEKYYSMNVENAKKINPSLEVNMTFKDEIPFESFSPSIFKKIYNVFT 131 Query: 116 QKVREAERAMVVDQFREHEGEIIT----GVVKKVNRDNISLDLGNN---AEAVILREDML 168 Q ++E + ++ ++ +G+II G+ NR +SL L N EA + + Sbjct: 132 QSMKEFSKEYLISKYGNLKGQIIRMKIEGINITNNRRMVSLKLENENGSIEAFMPDKLQN 191 Query: 169 PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAAR 228 P GD V + V+P++RG ++ V+ + E+L +L +E+PEI I I A R Sbjct: 192 PNIEMVIGDYVEVYVEDVKPDSRGLRVIVSNTSNEILKKLLELEIPEIASGNIVINAIKR 251 Query: 229 DPGSRAKIAVKTN---DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVI 285 PG R+KIAV IDP+GA VG +G+R+ +S LGGE+ID++L+D N +F+I Sbjct: 252 IPGIRSKIAVSKTSFAPDGIDPMGAIVGQKGSRINKISDRLGGEKIDVILFDTNLEKFII 311 Query: 286 NAMAPADVASIVV--DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDD 343 N+++PA VA I DE + + V + +AIG+ GQNV+LA+ L+ L++++V Sbjct: 312 NSISPASVAHISKINDEANNHFLVVVPDLDNTKAIGKAGQNVKLAAGLTETRLDILSVTQ 371 Query: 344 LQAKHQAEAHAAI 356 + K + Sbjct: 372 AKEKGIELLNNGN 384 >UniRef50_Q9ZJA6 Transcription elongation protein nusA n=16 Tax=Helicobacter RepID=NUSA_HELPJ Length = 395 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 92/367 (25%), Positives = 182/367 (49%), Gaps = 30/367 (8%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++I ++E ++ EK LP+E I + ++ L + + + V ++ + Sbjct: 2 EKISDLIECIAYEKNLPKEMISKVIQGCLLKMAQNELDPLARYLVV--EENKQLQLIQLV 59 Query: 63 LVVDE-----VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 V+++ V P+K I+L A+ D S+ + D + + + + + + + Sbjct: 60 EVLEDDDERLVNDPSKYISLSKAKEMDPSVKIKDELSYSLSLESMKQGAINRLFKDLQYQ 119 Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRD-NISLDLGNNAEAVILREDMLPRENFRPG 176 + +A + F++ ++ G V V+ + N +++ + V+ + E+F+ G Sbjct: 120 LEKALEDSHFEAFQKRLNSVLMGQVILVDHNQNTFIEIEQQFQGVLSMRHRIKGESFKIG 179 Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 D ++ VL V+ +G L ++R+ P+ML L +EVPEI ++ IEI AR PG+RAK+ Sbjct: 180 DSIKAVLTQVKRTKKGLLLELSRTTPKMLEALLELEVPEIKDKEIEIIHCARIPGNRAKV 239 Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296 + +++ RIDP+GA VG++G R+ A+S EL E ID + + + P ++ A+APA + S+ Sbjct: 240 SFFSHNSRIDPIGAAVGVKGVRINAISNELNKENIDCIEYSNVPEIYITLALAPAKILSV 299 Query: 297 VV----------DEDK------------HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW 334 + +E + + + ++AIG+ G NV LAS L+G+ Sbjct: 300 EIKKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSKAIGKGGVNVCLASMLTGY 359 Query: 335 ELNVMTV 341 + T+ Sbjct: 360 HIEFETI 366 >UniRef50_B3PNC2 Transcription elongation factor NusA n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PNC2_MYCA5 Length = 524 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 109/478 (22%), Positives = 201/478 (42%), Gaps = 24/478 (5%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR-R 61 KEI + +S K L ++ E + A+ Y+++ ++ D ++ +F Sbjct: 13 KEIFKAINDLSKLKNLNTNEVIELFKDAVKKVIM-SYDEDAELEFVFDEENNEFIVINHT 71 Query: 62 WLVVDEVTQPTK--------EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV 113 VV + E+ L A+ + GD + + I TF + Q Sbjct: 72 KYVVQDPITAEDKDMLCRCIEVPLSIAKELKSTAKEGDVISETINFETFQKKDYIRILQS 131 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRE--DMLPRE 171 Q +RE E+ ++V + G+I+ V I +L + A + + Sbjct: 132 FNQSIRELEKKVIVGVYSLKIGQIVRAKVATPTTRGIFFELEDGTPAYMPSNANNRKLTA 191 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 N +PGD + + +V + Q+ V+ + +++ +L EVPEI +I+I AR PG Sbjct: 192 NLQPGDSIDVYIDNVGDADKNVQVLVSTVESKLIDKLLYKEVPEIANGLIDIVKIARIPG 251 Query: 232 SRAKIAVKTNDK---RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM 288 RAKIA+ N+K ++ VG+ +G G+R+ V +L GER+D++ + + F+ NA+ Sbjct: 252 ERAKIAISANEKTPIGVEVVGSVLGENGSRINNVIQQLKGERLDVIEYSADIKTFIKNAI 311 Query: 289 APADVASIVVDEDKHTM-----DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDD 343 +PA V IV +++K + V + AIG+ GQNV LAS L +L++ + D Sbjct: 312 SPAKVIDIVENKEKWQANYPAYIVVVPNQHNTLAIGKRGQNVVLASDLVRAKLDIFSQDQ 371 Query: 344 LQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTV 403 + LD + + T ++ A ++ + E E Sbjct: 372 ADLAKIEYDINNGNITQAELDELAQGKRLQSQFRRRTRQDTASRDTIDMADFEKEMEEIK 431 Query: 404 EALRER---AKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLED 458 + + ++ SL K +L +LE + D KL ++ +E+ Sbjct: 432 ARMTSYESFERQLFNQDVSNEDISLAFEKAQAELASLEK-EIDEDDKLYSKQPENVEE 488 >UniRef50_B5ZBC7 Transcription termination factor NusA n=15 Tax=Ureaplasma RepID=B5ZBC7_UREU1 Length = 458 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 101/464 (21%), Positives = 199/464 (42%), Gaps = 40/464 (8%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 +KE + + + + + E + ++ A + + I+ K G + FR Sbjct: 7 SKEFIEYFKDTAKQNEIELEVLSSIIKEAFEKTYLRT-HPGENFETNINLKEGTINCFRN 65 Query: 62 WLVVDEVT----------QPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAK 111 +VV+ EI L+ AR + + +GD ++ I F I Sbjct: 66 LVVVENEKAHNEDLETCLDDAVEILLDDARKINANAQIGDTIKQYISIDDFKSIEVGQIG 125 Query: 112 QVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDN---------ISLDLGNNAEAVI 162 ++ QK+ E V D ++ ++I V ++N + + LD + Sbjct: 126 SLLRQKITEIHNKRVADFWKPSLMKMIRAKVAEINYNKQRNEITGVKVELDDQWKTLGYL 185 Query: 163 LREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIE 222 R+D + E F+ G+ ++ V+ ++R + ++R++PE++ E+ + EV +I IE Sbjct: 186 SRKDRIGDEKFKVGETYDFIIKEVKEQSRLWPVLLSRTEPELVEEILKREVVDIKNGNIE 245 Query: 223 IKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQ 282 IK AR G + K+AV TN I+PV VG +G + ++S +L ERID++ + D+ Sbjct: 246 IKKIARIAGFKTKVAVSTNLLNIEPVAVVVGNKGLTITSISKQLNNERIDVIRYADDKRI 305 Query: 283 FVINAMAPADVASIVVDE---DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVM 339 F+ NA+ + ++V E D+ + V +L IGR G N+RL ++++ W ++V Sbjct: 306 FIANAIGLDKLKGLLVQENESDQRSAIAIVSKEDLPSVIGRGGANIRLIAKITEWNIDVK 365 Query: 340 TVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLD 399 T++ ++ ++ + ++ + + L I+ + Sbjct: 366 TIEQAFEENVV--------------YEKFDEKIYRSWNIESINKKNVTNDEMLALIDNMQ 411 Query: 400 EPTVEALRERAKNALATIAQAQEESLGD--NKPADDLLNLEGVD 441 + VE E+ K+ L + S D + L LEG + Sbjct: 412 DEKVEK-TEQVKDQLKQQEKQTIVSNNDDSENDDEQLEYLEGFE 454 >UniRef50_Q7NBZ6 NusA-homolog n=1 Tax=Mycoplasma gallisepticum RepID=Q7NBZ6_MYCGA Length = 625 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 103/446 (23%), Positives = 188/446 (42%), Gaps = 25/446 (5%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 NK L ++ V+ K + +++I L+ A+ A K+ + + + V ID G F+ Sbjct: 6 NKSFLEAIQTVAETKNISKKEISTILKDAIIRACAKE-DPDQRIDVMIDFDMGLLKIFKL 64 Query: 62 WLVV-----DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQ 116 + V+ +E EI L+ A + ++ +GD + F R+ Q Q Sbjct: 65 YKVIDDSVSEEEFDEINEIHLKDALATNPTIKVGDDFLKSLSIGDFSRVVATNISQYFRQ 124 Query: 117 KVREAERAMVVDQFREHEGEIITGVVKKVNRDN--ISLDLGNNAEAVILREDMLPRENFR 174 K+ E V ++ +I+ G V+K + + ++LG A + D +P E + Sbjct: 125 KLSELVNKQAVSEWTPKLNKIVRGTVEKDENNPNVLLVNLG-GIYAYYYKRDWVPNEELQ 183 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 VL ++ +++ L V+RS + + +PEI E ++EIKA R G + Sbjct: 184 NDVEYDFVLTQIKEQSKSWPLIVSRSDALYVKHVLTENIPEIKEGIVEIKAIQRVAGQKT 243 Query: 235 KIAVKTNDKRIDPVGACVGMRGARVQAVSTEL---------GGERIDIVLWDDNPAQFVI 285 K+AV +N+ IDPV +G G R+++++ L E ID+ W+D+ + + Sbjct: 244 KVAVLSNNPDIDPVTLILGDGGIRIKSIAANLIEHSSGVKVSNEVIDVFHWNDDVFKLIA 303 Query: 286 NAMAPADVASIVV---DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 NA P D+ + V E ++DI VE L IGR G NVRL S ++GW ++ + Sbjct: 304 NACYPVDIIGVDVLEDSERDKSVDIIVEDQYLPFLIGRAGINVRLLSYMTGWSIDFKSQS 363 Query: 343 DLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPT 402 + + +D+ F ++ + V L+ + T Sbjct: 364 AAIEDNINVVPLNYSPVDNAVLVDQ-FKRNSRRTKIASKQSFKKVET---LQTPLIAYST 419 Query: 403 VEALRERAKNALATIAQAQEESLGDN 428 + K I + +E + Sbjct: 420 AVEGDDDIKVDFQKIYEEAKEQRYEM 445 >UniRef50_Q4A7E0 N-utilization substance protein A n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4A7E0_MYCH7 Length = 614 Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats. Identities = 75/368 (20%), Positives = 161/368 (43%), Gaps = 19/368 (5%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLV 64 I+ ++ V+ L E + + + A+ KK + + ++++ D + F F + Sbjct: 20 IIQAIQDVAKNSELNLEAVIDIFQEAIEFVITKKIDPDAQIKIEADLEQLSFKVFNTNGI 79 Query: 65 V------------DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQ 112 V ++V I L A+ D + + D +I +F+ Sbjct: 80 VVEENYFDDLTDEEKVNDLVSFILLSKAKETDPEIQVDDIFSIEINLESFEHWLFMAIMH 139 Query: 113 VIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPREN 172 QK+ E R V +++ + ++ V ++ ++ + + +N Sbjct: 140 AFKQKISEIVRNNVYNKYLSLKNNVVLATVTNKIAAGYIFEIDDDKVSAFMPSHYASGQN 199 Query: 173 FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 232 + G + V+ +V + +Q+ ++ +++ + +PE+ + +EI + AR PG Sbjct: 200 LKIGTKHEVVIENVSKNTKQSQVVISSKSVQLVKKKIIDAIPELQSKFLEITSIARIPGE 259 Query: 233 RAKIAVKTND----KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM 288 R K+A++ + I +G+ VG G+RV A+S EL GE+I+++ +DDN +F++NAM Sbjct: 260 RCKVAIRRTEDAEADNISEIGSIVGATGSRVLAISQELQGEKIEVIKYDDNIVKFIVNAM 319 Query: 289 APADVASI---VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ 345 +P+ V + + I V + AIG+NG NV+L + L+ ++ ++ Sbjct: 320 SPSKVICVKEFKIGHKLRRFIIVVPDFQHSLAIGKNGSNVKLVADLTRCQVQIIPYSSAL 379 Query: 346 AKHQAEAH 353 + Sbjct: 380 KDQNFKIE 387 >UniRef50_C4XE33 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XE33_MYCFE Length = 538 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 102/518 (19%), Positives = 224/518 (43%), Gaps = 48/518 (9%) Query: 8 VVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVD- 66 ++ EK L E++ + K + ++ ++D++ + F V Sbjct: 23 LIGYFEKEK-LHIEEVIKIFSEETTRIINKILDPNAEIVFELDKEKQEVHIFNNKTCVTK 81 Query: 67 ------EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQ-------V 113 ++ + + A+ + D ++ +I+ D+ AK+ Sbjct: 82 DEELLLDLENQISFVGYKEAKVRMPKVKEDDEIKWEIDLGVLDKSKNPEAKKSLKIINSS 141 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVN-RDNISLDL-GNNAEAVILREDMLPRE 171 I Q ++ ++ MV +Q+ G+ + V+ N + ++ + +N A + + + Sbjct: 142 IAQAIKTLQKKMVFEQYSSKIGQTVKVVLNSKNSNGSWNVQIVNSNVNAYLPAGLISTKR 201 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 PG V+ V E + +Q+ V+ P+++ + + +PEI E +IE+ R PG Sbjct: 202 KANPGQYFDVVIEKVSEETKLSQIEVSLDSPKIVWNILQNNIPEIAEGLIEVVDVVRQPG 261 Query: 232 SRAKIAVKT---NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAM 288 R K+AVK + ID G+ +G G+R+ +S +L GE+ID++L+D++ ++V N++ Sbjct: 262 ERVKVAVKLAEGANPDIDVRGSIIGENGSRIDLLSQKLDGEKIDVILYDEDIKKYVANSI 321 Query: 289 APADVASIVV-DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK 347 +P +++ DE ++ + V +L AIG+ G N LAS L+ +L+++++ D +A+ Sbjct: 322 SPIQAVDVILKDERENKYLVIVVPEHLTPAIGKRGVNAYLASSLTKVKLDIISITDAKAQ 381 Query: 348 HQAEAHAAIDTFTKYLD----------------IDEDFATVLVEEGFSTL------EELA 385 + T + + ++ A + + F ++ +++A Sbjct: 382 GIIFDETLVPTISATIKKEGPKIRYQKSNNNRRFNKKPANNIFAQSFDSIDVSNFDQDIA 441 Query: 386 YVPMKELLEIEGLDEPTV--EALRERAKNALATIAQ-AQEESLGDNKPADDLLNLEGVDR 442 + E ++ L E E L ++ ++ A + +++ KP + D Sbjct: 442 AFELHEQDRLDSLQEDDSNFEELVKKIESEYAVENEVENIKNVEVTKPVAQDNKISASDY 501 Query: 443 DLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGA 480 A ++A V +DL GIDD D+ + ++ Sbjct: 502 KKAKEVAKDFVVD-DDLKNFGIDDF-DLSDIDFDEEEN 537 >UniRef50_B5Y929 Transcription termination factor NusA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y929_COPPD Length = 343 Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 94/344 (27%), Positives = 174/344 (50%), Gaps = 23/344 (6%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYE---QEIDVRVQIDRKSGDFDTF 59 K + + ++++ L ++I EAL+ AL +A +K+ + + + ++I+ Sbjct: 11 KALNEYIRQIASDLDLTPQEIIEALKDALVSAIRKELDIPKEAVGSAIKIEENGSSLKFL 70 Query: 60 RRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVR 119 V K I + A + D++E + R++ QTA+ + ++ Sbjct: 71 VNKDFV-------KTIPEDEA--------VSDWIEFPL--SNLSRVSIQTAENTLKNRMN 113 Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRD-NISLDLGNNAEAVILREDMLPRENFRPGDR 178 E + + + + GE++T V + + + + E V+ + LP + + PGD Sbjct: 114 EKSKEKAIKRIAQFSGEVVTARVIRRDPKTKLIYMDVDGVECVLEPSEQLPTDRYAPGDS 173 Query: 179 VRGVLYSVRPEA-RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIA 237 +R ++ + G + ++RS P++L LF +EVPE+ + V+ I AR PG R+K+A Sbjct: 174 LRCLVLGAKNIPMYGQGVALSRSSPDLLKLLFTLEVPEVADGVVRIMGIARKPGRRSKVA 233 Query: 238 VKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297 V + D R+DP GAC+G +G R+QA+S L E+ID+V WD +PA+ + N ++P V + Sbjct: 234 VMSIDPRLDPQGACIGYKGQRIQAISRSLANEKIDVVRWDTDPAKLIANVLSPGKVDKVE 293 Query: 298 V-DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 V D + N+ +G +G+NV LA QL+GW ++V Sbjct: 294 VLDPKNKRALVYTTPDNIKVVVGEDGENVELAEQLTGWTIDVRE 337 >UniRef50_Q4A579 N-utilization substance protein A n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A579_MYCS5 Length = 560 Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats. Identities = 81/361 (22%), Positives = 162/361 (44%), Gaps = 16/361 (4%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 +K+ ++ + S K + ++ + + +K + E +V +D + + + Sbjct: 16 SKKWFLLLNSFSKNKEISNDEFIAMSQEVINHIINRKLDPEAEVVFSVDNEKEEILLLNK 75 Query: 62 W-LVVDEVTQPTK-------EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV 113 VV++ I L A+ +++ +GD + IE +FD+ + Sbjct: 76 NTEVVEDSEAAMYDELLGISYIGLSKAKEVNKNAKVGDLISYPIEFNSFDQKNLVAMRNG 135 Query: 114 IVQKVREAERAMVVDQFREHEG-EIITGVVKKVNRDNISLDLGNNAEAVILREDMLPREN 172 + E + + ++ G +++ + K L L + A + + ++ Sbjct: 136 FSAAIAEKAKNRLFAKYHPLIGSKLMVQIASKHENGGFFLKLEDGTSAYLPKNSIIKSVE 195 Query: 173 FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGS 232 PG + L SV +A+G L VT + PE + ++ E+PEI + I+ R PG Sbjct: 196 LNPGQKFDVFLNSVNIDAKGLYLEVTMTSPEQVRDVLFREIPEIANGDLIIRNIQRIPGE 255 Query: 233 RAKIAVKTNDKR-----IDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINA 287 R+K+ V N ++ D +GA G + R+ VS L E+ID++ + +NP F+ NA Sbjct: 256 RSKVVVSLNPEKQSAHTHDLLGAMFGNKAQRINDVSKSLNNEKIDVIRFAENPKDFIRNA 315 Query: 288 MAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAK 347 M+P V +V K + V +++ AIG NG NV LAS+++ +++V++ + + Sbjct: 316 MSPCPVVDVVKS--KKGFYVIVRPEDVSLAIGSNGVNVSLASKVTNNKIDVLSTEQAFQE 373 Query: 348 H 348 Sbjct: 374 K 374 >UniRef50_B4U6H2 NusA antitermination factor n=3 Tax=Aquificaceae RepID=B4U6H2_HYDS0 Length = 322 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 184/346 (53%), Gaps = 29/346 (8%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 M K I ++E V+ EK +P + + AL++A+A +K+ + I ++ ID Sbjct: 1 MVKNIKKLIENVAKEKDIPAKIVEIALKNAIAYGIRKE--KHIRGKIYIDFA-------- 50 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 D+ T I+ D I + +RI AK+ ++++ Sbjct: 51 -----DDDTITAYIISGREKTKLD------------ISTEDLNRIAAYAAKEEFLKELEN 93 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER ++ EG I+ G+V+++ +D ++ +A + R + + +E+F+ DRV+ Sbjct: 94 AERERGFLEYVSQEGNIVHGIVREITKDQTAIVDLGPIDAELPRREQISKESFKKNDRVK 153 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 +L+SV+ E L ++R+ P+ L L E+PE+ +++I + AR+PG +AK+ V T Sbjct: 154 ALLFSVQKERGRPVLLLSRTHPKFLRRLLEAEIPEVATGLVKIISVAREPGEKAKVVVDT 213 Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300 DK+IDPVG +G++G+++ +S EL GE ID+V + + +F+ N PA + + E Sbjct: 214 EDKKIDPVGVVIGIKGSKINPISKELAGEHIDVVRYSKDKKKFLENLFFPAKILDVR--E 271 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA 346 + +++AV+ ++ AIG+ G N +LA ++ G ++VM+ +D Sbjct: 272 SDNQIEVAVDKDQISLAIGKRGINTKLAYKILGKHIDVMSKEDFDK 317 >UniRef50_D2SDW8 NusA domain protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SDW8_9ACTO Length = 524 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 130/248 (52%), Gaps = 28/248 (11%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN ++ ++AV EK +P + + EA+E+AL TA + VRV +DRK+G+ Sbjct: 1 MNIDV-TALKAVEREKGIPADTVIEAIETALVTAYRHADGASKHVRVHVDRKTGEVAVL- 58 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 A+ + E F RI TAKQVIVQ++R+ Sbjct: 59 -------------------AQELGPDGEV--VREWDDTPSDFGRIAASTAKQVIVQRLRD 97 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDN----ISLDLGNNAEAVILREDMLPRENFRPG 176 AE ++ EG+I++G+V+ R N + +D+G EAV+ + +P E++ G Sbjct: 98 AEHEQTFGEYAGKEGDIVSGIVQADQRRNASGTVLVDIGK-VEAVLPAAEQVPGESYPHG 156 Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 R+R + SV RG Q+ V+R+ P ++ +LF +EVPEI + +EI A AR+ G R+KI Sbjct: 157 SRLRAYVVSVARTYRGPQVTVSRTHPNLVRKLFALEVPEIADGSVEIVAVAREAGHRSKI 216 Query: 237 AVKTNDKR 244 AV+T+ R Sbjct: 217 AVRTSVPR 224 >UniRef50_C7LKE4 Transcription elongation factor NusA n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKE4_SULMS Length = 342 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 174/324 (53%), Gaps = 2/324 (0%) Query: 24 FEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV--DEVTQPTKEITLEAAR 81 ++ + KKKY + + ++ + K+G+ + +R +V + + K+I + A Sbjct: 19 MSIIKKSFIFFLKKKYGKLKNYKIFFNYKNGEIEIWRDLKIVSDEIIKNFNKQIEISKAI 78 Query: 82 YEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGV 141 ++L +GD ++++IE + + K+ + K ++ +R + ++ GEII Sbjct: 79 KIKKNLKIGDSLKEKIEYQQLGKKFLFSLKKDLFYKFKKFDRKNQLQILKKKIGEIIYAK 138 Query: 142 VKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSK 201 V + DNI N + ++L+E+ +P E F+ G+ ++ V+ LF++R Sbjct: 139 VDYIINDNIFFKNNENNKMILLKEEQIPNEKFKKGNSFFLLIKKVKFIKNKIYLFLSRKD 198 Query: 202 PEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQA 261 L +L +E+PEI +I IK R G R+KIA+K+ +K IDP+G CVG++G++++ Sbjct: 199 KNFLKKLLELEIPEISNGLIIIKKIVRIAGERSKIAIKSKNKTIDPIGTCVGLKGSKLKN 258 Query: 262 VSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRN 321 + E+ E IDI+ + N ++ +++PA VA I +D K I+V + + +AIG Sbjct: 259 IIKEINNEIIDIINYSSNIELYLTRSISPAKVAMIKIDRKKKLAFISVNSEEIKKAIGNK 318 Query: 322 GQNVRLASQLSGWELNVMTVDDLQ 345 N+RLAS+L+G+++ ++ + Sbjct: 319 KTNLRLASKLTGYKIYILNIKKKN 342 >UniRef50_C5J6Y1 N-utilization substance protein A n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6Y1_MYCCR Length = 623 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 163/373 (43%), Gaps = 24/373 (6%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW-L 63 IL ++ ++ + + + E ++ KK + E ++ ++ D F + Sbjct: 20 ILESLKEIAQQNQTTIDIVLETFSKSIEKVINKKIDPEAELELETDFDKFIFKVYNINGE 79 Query: 64 VVDEVTQPT-----------KEITLEAARYED----ESLNLGDYVEDQIESVTFDRITTQ 108 +V++ I++ A + E L +G+ V+ +I+ TFD+ Q Sbjct: 80 IVEDTYFDNLDDLAKHEASFSFISISDAIAKKIAKPEDLQVGNRVKIEIDITTFDKSIFQ 139 Query: 109 TAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML 168 +A Q Q E R + D++ + +I + +L + A + Sbjct: 140 SAIQNFKQTNSEINRQRIYDKYLPLKNTVILAKITNKIHSGYIFELVEDKVAAFMPSHYS 199 Query: 169 PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAAR 228 + + GD + V+ V ++ +Q+ V+ +++ +PE+ +EI + AR Sbjct: 200 IGQKLKVGDILEVVIEDVNKSSKQSQIIVSSKSIQLVKNKIINAIPELQTNNLEIVSIAR 259 Query: 229 DPGSRAKIAVKTND----KRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFV 284 PG + K+AVK + I +GA +G +G R++++S +L GE+I+IV +D+N FV Sbjct: 260 IPGEKCKVAVKKTNLPGSDHISELGAIIGEKGVRIESISQDLDGEQIEIVKYDENILTFV 319 Query: 285 INAMAPADVASI---VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSG-WELNVMT 340 NA+APA V + ++ + V AIG+ G NV+LA+ L+ +L ++ Sbjct: 320 ANAIAPARVVCVKEFKINNKNKHYTVVVPDFQHTLAIGKKGSNVQLATDLTRIKKLEIIP 379 Query: 341 VDDLQAKHQAEAH 353 + E Sbjct: 380 YSRALKDDKFEIE 392 >UniRef50_A5IZE0 Transcription elongation protein NusA n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IZE0_MYCAP Length = 544 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 87/478 (18%), Positives = 198/478 (41%), Gaps = 45/478 (9%) Query: 13 SNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVV------- 65 EK L + + + +K + E ++ +ID ++ + + +V Sbjct: 25 EKEK-LELSVLADIFSEEVTRIVQKNIDPEANIVFEIDEENKEVHVYNTEAIVVDDSEFD 83 Query: 66 -----DEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQ-------TAKQV 113 D+V+ + L A+ N+ D ++ +I+ + + T + Sbjct: 84 DLSEADKVSLMLYNVPLSVAKKVKNDANVDDTIKIEIDLLALSKSTNPVVQKTPKIIESS 143 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVN-RDNISLDL-GNNAEAVILREDMLPRE 171 I+Q +++ ++++V ++ E GE + +N + + ++ + + A + + + Sbjct: 144 ILQAIKKLQKSIVYTKYLEKIGETVKVTFISMNSKGSWNVQIVDDGVIAHLPANYVSAKR 203 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 PG V+ V + + +Q+ V+ P+++ ++ +PEI +IEI R PG Sbjct: 204 VINPGSYGDVVIERVEKDTKLSQITVSLDSPKLIEKILYNNIPEISSGLIEIVNVQRIPG 263 Query: 232 SRAKIAVKTN--DKRIDPVGACVGMRGARVQAVSTELG-------GERIDIVLWDDNPAQ 282 R K K + ++ +D GA +G +R+ + +E+ E+ D++++ + + Sbjct: 264 ERTKAVFKASAGNEHLDVYGAIIGQDSSRINLIISEMNQGVNQADKEKFDVIVYTSDKKE 323 Query: 283 FVINAMAPADVASIV-VDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 F+ M P V IV +E +++ + L+ AIG+ G N LAS++S L+++TV Sbjct: 324 FIRRCMLPGQVVDIVPKNESQNSFYVITIKAGLSAAIGKKGANTMLASKVSHSNLDIITV 383 Query: 342 DDLQAKH-------QAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLE 394 ++ + K+ AE ++++F +Y + T + L Sbjct: 384 EEAKQKNIPFDESKIAEVEESLNSFRRYGATKKAPTRAFNNNRRKTNSYFENLD----LS 439 Query: 395 IEGLDEPTVE--ALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAA 450 +EG D+ + + + + +E + N+E +R + KL Sbjct: 440 LEGFDKDILAFREQEQAFFDESNSQNMEFDELIQQYNSESVKENIESDERSIDEKLNE 497 >UniRef50_Q0EZ71 Transcription elongation factor NusA n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ71_9PROT Length = 235 Score = 235 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 100/236 (42%), Positives = 144/236 (61%), Gaps = 2/236 (0%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN E+L V +AV+ EK++ RE + EA+E AL TA ++ Y ++V +IDR +G+ F Sbjct: 1 MNVEMLQVADAVAREKSVDRELVLEAMEQALKTAARRTY-PGLNVEAEIDRDTGEIRLFH 59 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 + V+EV E+T+E A+ + LG + + RI QTAKQVI QK+RE Sbjct: 60 VRVAVEEVEDQDNELTVEEAQALRDDAVLGSEFRTALAPIELGRIAAQTAKQVINQKIRE 119 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180 AER V+ ++ GE+ITG+VK+V R N+ +DLG EAV+ RED+LPRE FR GDRVR Sbjct: 120 AERERVIAEYEPRVGELITGIVKRVERGNVYVDLGRG-EAVMYREDLLPRETFRQGDRVR 178 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236 L VR + +G +FV+RS M++ LF EVPEI + + I+ P A++ Sbjct: 179 AYLREVRNQPKGPVVFVSRSDAGMVLRLFEQEVPEIEDGTVTIQRLPVIPARAARL 234 >UniRef50_Q98R07 N-UTILIZATION SUBSTANCE PROTEIN A n=1 Tax=Mycoplasma pulmonis RepID=Q98R07_MYCPU Length = 550 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 83/457 (18%), Positives = 181/457 (39%), Gaps = 25/457 (5%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 + +E +S +K L + + + A K ++ + D+ + D + + + Sbjct: 29 DFFLSLENLSRDKKLKISTVKQIFQEAFFQVIKNDFDPDADLEIVYDDEKKEVTFYNNNA 88 Query: 64 VV-----DEVTQP-------TKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAK 111 +V +E + L AR E + +GD V+ QI+ + Sbjct: 89 IVIEDALEEADDDYSAEEMLVSFVRLSDARKEKSDVQIGDIVKKQIKHDELKLNEVKKIF 148 Query: 112 QVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNIS--LDLGNNAEAVILREDMLP 169 + Q + + + V+D + G+ I +++ + + + +++ Sbjct: 149 SIFQQNLAKEAKQSVLDFYSSKIGQKIQVKIEEFKNRGFFGSVVGDMETKVFLPNKEINK 208 Query: 170 RENFRPGDRVRGVLYSVRPEARGAQ---LFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 G ++ E + L V+ + P +I + + EI I IK Sbjct: 209 NSKIALGKKIDVYFIEFAKEFQNKSETLLIVSLNSPLEVINVLKETFEEIANGSIIIKKI 268 Query: 227 ARDPGSRAKIAVKTN---DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQF 283 AR G R KIAV+ + + ++ +G +G G R + +S +L E+ID V++ ++ +F Sbjct: 269 ARKAGIRTKIAVEKSHLASEGLNIIGTLIGQSGDRNKIISEKLNNEKIDFVIYKEDLQEF 328 Query: 284 VINAMAPADVASIV-VDEDKH--TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMT 340 ++ ++ PA+V SI V + H ++ V ++ AIG+ G N L+S+LS +N+ T Sbjct: 329 IVESLKPANVISIERVVPETHIPAFNVVVPNSQMSVAIGKAGMNTILSSELSQSRINIET 388 Query: 341 VDDLQAKHQAEAHAAIDTFTKYLDIDE-DFATVLVEEGFSTLEELAYVPMKELLEIEGLD 399 +D + K + + +I++ + V FST A Sbjct: 389 LDKAKEKGWSILWNGNVKEHELEEIEKHSWQNKKVISQFSTRRSKARRQNDFSNYANDFG 448 Query: 400 EP-TVEALRERAKNALATIAQAQEESLGDNKPADDLL 435 + ++ ++ ++ A + + + + D+ Sbjct: 449 KGFNIDEFKKDFEDFEAYFEENNLVASDEMDTSLDMA 485 >UniRef50_C1E6R5 Predicted protein n=2 Tax=Micromonas RepID=C1E6R5_9CHLO Length = 897 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 151/387 (39%), Gaps = 56/387 (14%) Query: 3 KEILAVVEAVSNEKA---LPREKIFEALESALATATKK-KYEQ-------EIDVRVQIDR 51 I+ + ++ K EA+ A+ A +K +Y DV V I+ Sbjct: 305 SAIVTALRDLATSKDGFESDPRVHLEAVSRAIDRAYRKLRYSAFAEMDPRGRDVCVDINV 364 Query: 52 KSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTF------DRI 105 G A+ G VE + + R Sbjct: 365 AEGTVAVL--------------------AQRIGR----GGTVEWETDDTDAFLEAYGKRH 400 Query: 106 TTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVK-KVNRDNISLDLGNNAEAVILR 164 + + +++ E A+ D +R G+++ V + R L L + A A + Sbjct: 401 MIRKIAHMYTEELNEQVSAVAADSYRAKRGQMVECTVVAEGRRGEYLLRLDDGAMACLPE 460 Query: 165 EDMLPRENFRPGDRVRGVLYSVRPEA----RGAQLFVTRSKPEMLIELFRIEVPEIGEEV 220 E+ +P + + G+RV ++ V R A + V+ + +L E+ EVPE+ Sbjct: 461 EESIPGKKYSQGERVCALVMEVEDRTWAADRRAPVIVSTAIAGLLAEVLAAEVPEVARGD 520 Query: 221 IEIKAAARDPGSRAKIAVKT---NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWD 277 + IK+ AR G +K+AV +K DPV ACVG+ +R++A+ LGGE I+ W Sbjct: 521 VVIKSVARVSGKMSKVAVARQEGAEKVFDPVLACVGVENSRLRAIRERLGGEVCQILTWS 580 Query: 278 DNPAQFVINAMAPADVASIVVDEDK-------HTMDIAVEAGNLAQAIGRNGQNVRLASQ 330 DN V A+ PA V +V E+ V + A+AIG G NV+LA+ Sbjct: 581 DNREDMVAEALFPAAVHRVVKAEEDDMDGRALDKFIAYVSRFDEAKAIGAGGVNVKLAAA 640 Query: 331 LSGWELNVMTVDDLQAKHQAEAHAAID 357 L+G + + ++ + Sbjct: 641 LTGCFILIERHEEGGGAGGGWGDQRAN 667 >UniRef50_A4RY26 Predicted protein n=2 Tax=Ostreococcus RepID=A4RY26_OSTLU Length = 710 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 80/390 (20%), Positives = 151/390 (38%), Gaps = 55/390 (14%) Query: 9 VEAVSNEK-------ALPREKIFEAL-------ESALATATKKKYEQEIDVRVQIDRKSG 54 + A++ EK L E I A+ + T +K+ IDV V ID + G Sbjct: 216 LRALAKEKEGYEADVGLHLEAIARAIDRGYRDMRGSALTVLQKEVRARIDVSVDIDVQRG 275 Query: 55 DFDTFRRWL----VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTA 110 F + + V+ TK T R ++ L Y+ ++I++ R+ T Sbjct: 276 RFAVLVQVVGRGGTVEREYDDTKFFTFNV-RRQNRMRTLIRYMSEEIKT-GVARLAT--- 330 Query: 111 KQVIVQKVREAERAMVVDQFREHEGEIITGVVK-KVNRDNISLDLGNNAEAVILREDMLP 169 + F G ++ G ++ + + +D+ A VI E+ L Sbjct: 331 -----------------EDFVGQIGNVVDGTLRFRTETGSWMMDIKGGAAGVIPPEEQLL 373 Query: 170 REN---FRPGDRVRGVLYSVRPE----ARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIE 222 N + GD + + V + ++ + P ++ + R EVPE+ IE Sbjct: 374 TYNDLPLKQGDELSCFVLDVDQNLFTGREQTPVVLSMTIPALVGAIIREEVPEVARGEIE 433 Query: 223 IKAAARDPGSRAKIAVKTNDKRI---DPVGACVGMRGARVQAVSTELGGERIDIVLWDDN 279 IK+ AR G K+AV + + V C+G + ++ + GGE + + W D+ Sbjct: 434 IKSIARMAGKVTKVAVALREGSTSWSNAVETCLGEDQSILRRIRERCGGEVVHFLPWSDD 493 Query: 280 PAQFVINAMAPADVASIVVD----EDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWE 335 PA+ + +++ PA+V + K V+ +L +AIG G NV+L + L+ Sbjct: 494 PAELIKSSLFPAEVLRVEESFPDGTQKRKFTAYVKEVDLRRAIGAGGNNVKLCASLTNAF 553 Query: 336 LNVMTVDDLQAKHQAEAHAAIDTFTKYLDI 365 + + + + + + Sbjct: 554 IVIEVDETAGNTQRRGSFNDDLDDSYDSGF 583 >UniRef50_Q96T48 Transcription termination-antitermination factor (Fragment) n=34 Tax=cellular organisms RepID=Q96T48_HUMAN Length = 172 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 1/170 (0%) Query: 143 KKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 +V + + L +N E ++ + + +P + +R G+ +R V+ V E ++ ++R+ P Sbjct: 1 YQVWKREVLLVDDDNNELILPKSEQIPADQYRKGETIRAVIERVDNENNNPKIILSRTSP 60 Query: 203 EMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAV 262 L L EVPEI + +I IK AR PG RAKIAV++ D+RIDPVGACVG+RG+RV + Sbjct: 61 TFLERLLEQEVPEIADGLIAIKKVARMPGERAKIAVESFDERIDPVGACVGVRGSRVHGI 120 Query: 263 STELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAG 312 EL E ID+V W N + + + + ++SI DE+ + Sbjct: 121 VRELCNENIDVVHWTAN-TKLLSSVLKSCPISSIAPDEETECDVYMLPKS 169 >UniRef50_A5ZWL2 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZWL2_9FIRM Length = 162 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 87/145 (60%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MNKE++ ++ + EK + ++ + A+E +L A K + + +V V I+ ++ DF + Sbjct: 1 MNKELMEALDILEKEKNISKDTLLGAIEQSLIQACKNHFGKADNVHVTINPETCDFSVYA 60 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 V + V P EI+L A+ + + LGD ++ +I S F RI TQ AK VI+QK+RE Sbjct: 61 EREVKEFVDDPALEISLVDAQKINTNAELGDMIKVEIHSKEFGRIATQNAKNVILQKIRE 120 Query: 121 AERAMVVDQFREHEGEIITGVVKKV 145 ER ++ DQ+ E E++TG+V++V Sbjct: 121 EERKVLYDQYYGMEKEVVTGIVQRV 145 >UniRef50_Q6MZ96 Possible nucleic acid binding protein n=3 Tax=Mycobacterium RepID=Q6MZ96_MYCUA Length = 182 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 3/145 (2%) Query: 201 KPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQ 260 P + VPE+ +++++I A AR PG RAK+AV++ I+PV C+G G R+ Sbjct: 30 SPNPIPAALSARVPELAQQLVDIVAIARIPGVRAKVAVRSRVAGINPVSVCIGWGGLRIA 89 Query: 261 AVSTELGGERIDIVLWDDNPAQFVINAM-AP--ADVASIVVDEDKHTMDIAVEAGNLAQA 317 V LGGERI +V + +PA +VIN + P A+ +E + + VEA + + Sbjct: 90 DVEKGLGGERIHVVAYHVDPATYVINVLGCPGTGTGAAAAAEERSRRIRVRVEAHDYPRT 149 Query: 318 IGRNGQNVRLASQLSGWELNVMTVD 342 +G+ GQNVRLAS+L+G ++ ++ Sbjct: 150 VGKAGQNVRLASKLTGQKIEILVEK 174 >UniRef50_B9PBC3 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9PBC3_POPTR Length = 274 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 80/181 (44%), Positives = 119/181 (65%), Gaps = 4/181 (2%) Query: 305 MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLD 364 MD+ V+ NLA +IGR+GQNVRLAS+L+GW++N+MT ++ K E+ F LD Sbjct: 1 MDVVVDEENLAVSIGRSGQNVRLASELTGWQINIMTQEESAQKQAEESEVVRKLFMAKLD 60 Query: 365 IDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEES 424 +DE+ A +L+EEGFS+LEE+AYVP+ E++EIE DE TV LR RA++AL T+ A+EE Sbjct: 61 VDEEVADILIEEGFSSLEEVAYVPISEMMEIEAFDEDTVNELRNRARDALLTMELAREEK 120 Query: 425 LGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMA 484 + + + DL +L+G+ +L KLA + T +DLAE +D+LA G+ +I Sbjct: 121 VEE--VSQDLRSLDGLTPELIGKLAEGNIHTRDDLAELAVDELA--AGVGKATPDDVITE 176 Query: 485 A 485 + Sbjct: 177 S 177 >UniRef50_UPI00019018E3 transcription elongation factor NusA n=2 Tax=Mycobacterium tuberculosis RepID=UPI00019018E3 Length = 166 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 30/177 (16%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60 MN ++ A + A+ ++ + ++ E ++SAL TA + + D R++IDRK+G Sbjct: 1 MNIDM-AALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVI- 58 Query: 61 RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120 AR DE+ NL +D F RI TA+QV++Q+ R+ Sbjct: 59 -------------------ARETDEAGNLISEWDD--TPEGFGRIAATTARQVMLQRFRD 97 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDN----ISLDLGNNA---EAVILREDMLPR 170 AE +F EGEI+ GV+++ +R N + + +G E VI + +P Sbjct: 98 AENERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPPPEPVPG 154 >UniRef50_UPI0000D54FAD transcription elongation factor NusA n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54FAD Length = 187 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 93/177 (52%), Gaps = 7/177 (3%) Query: 320 RNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFS 379 + GQNV+LAS L+ E++++T ++ + Q E + LD+++ A +LV +G++ Sbjct: 4 KKGQNVKLASNLTSLEIDILTEEEESERRQLEFKEKSVLLAETLDVEDVIAQLLVTDGYT 63 Query: 380 TLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEG 439 T+E +A ++ L +IEG D + + +R+K+ + ++ ++ + + + L NL G Sbjct: 64 TVESVAAESLENLEKIEGFDSTLAQEIIDRSKSFIQDKEESDKKLIEEKINDEKLKNLNG 123 Query: 440 VDRDLAFKLAARGVCTLEDLAEQGIDDLADIE-------GLTDEKAGALIMAARNIC 489 ++ + KLA + + D A+ +L D E L ++ A +IM AR+ Sbjct: 124 MNNSILAKLAKSNILNVNDFADLATFELIDKEEGILKELDLDEDIANNMIMEARSFW 180 >UniRef50_D0PA07 Transcription elongation factor NusA n=4 Tax=Rhizobiales RepID=D0PA07_BRUSU Length = 174 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 18/153 (11%) Query: 360 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQ 419 + L++DE VL EGF+++EELAYV E+ I+G DE T +++RA+ L I Sbjct: 1 MEALNVDEMVGQVLASEGFASVEELAYVDAGEISSIDGFDEDTAGEIQDRAREYLERIEA 60 Query: 420 AQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDL------------ 467 Q+ + AD+L L G+ + + GV T+ED A +DDL Sbjct: 61 EQDARRKELGVADELRELPGMTTAMLVAVGEDGVKTMEDFAGYAVDDLVGWRERKDGDTI 120 Query: 468 -----ADIEGLTDEKAGALIMAAR-NICWFGDE 494 L+ A +++AAR W +E Sbjct: 121 NHSGVLTPFDLSRVDAEQMVLAARLKAGWITEE 153 >UniRef50_Q2FPJ7 NusA family KH domain protein n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FPJ7_METHJ Length = 142 Score = 93.8 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE--DKHTM 305 +G +G +G ++ S G+RI+ V + D+PAQF+ N PA V + + + Sbjct: 45 MGYAIGKKGVNIKKASESF-GKRIEAVEYSDDPAQFIRNCFHPAQVKEVQFSDYHGEQIA 103 Query: 306 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 + + + +AIG+ G+N+ L+ E ++ + Sbjct: 104 HVVIRDEDRGRAIGKAGKNLNRTKMLALREHDIQNI 139 >UniRef50_B1L737 NusA family KH domain protein n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L737_KORCO Length = 158 Score = 91.9 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 248 VGACVGMRGARVQAVSTELGGE---RIDIVLWDDNPAQFVINAMAPADVASIVV--DEDK 302 +G VG G +++A+ L G+ I++V +DD+P F+ N ++PA V + + +D Sbjct: 49 LGRAVGRGGRKLKAMKRFLKGDLDYDIEVVEFDDSPEGFIANLLSPARVQKVKIVHQDDG 108 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ 345 T V + + AIGRNG+ ++ L+ ++ V Sbjct: 109 ITAIAYVLDEDKSLAIGRNGRRIKRTRLLAKRWYDIDNVKIAT 151 >UniRef50_D1YXX1 NusA protein homolog n=9 Tax=Euryarchaeota RepID=D1YXX1_METPS Length = 147 Score = 91.9 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHT--M 305 +G +G G + V ++ G ++++ ++++P +F+ N PA V +IV+ Sbjct: 47 MGLAIGKNGNNINRVKKQI-GRHVEVIEYNEDPKEFIKNLFQPATVKNIVISTKGERTLA 105 Query: 306 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 + V + AIG+NG+N+ L+ V V Sbjct: 106 IVDVATKDKGLAIGKNGRNINKVKLLAQRHHTVDDV 141 Score = 42.9 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 41/105 (39%), Gaps = 3/105 (2%) Query: 274 VLWDDNPAQFVI--NAMAPADVASIVVDEDKHTMDI-AVEAGNLAQAIGRNGQNVRLASQ 330 V + +++ ++ A ++ E + + + V++G++ AIG+NG N+ + Sbjct: 4 VSFTTETMRYIALFESLTGAHAKDCLILEGEDSRIVFVVKSGDMGLAIGKNGNNINRVKK 63 Query: 331 LSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVE 375 G + V+ ++ + + + +V+ Sbjct: 64 QIGRHVEVIEYNEDPKEFIKNLFQPATVKNIVISTKGERTLAIVD 108 >UniRef50_A8MB79 NusA family KH domain protein n=6 Tax=Thermoproteaceae RepID=A8MB79_CALMQ Length = 148 Score = 88.4 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 250 ACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE---DKHTMD 306 VG G V+ + L G+ ++IV + D+P + + NA+ PA V +I +++ + Sbjct: 52 LAVGKGGINVKKLKN-LLGKDVEIVEYGDDPEELLRNALYPAKVVNITINKLPNNGKVAI 110 Query: 307 IAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 I VE G A+G+ +N++ A+ L+ ++ V Sbjct: 111 IRVEEGEKGIALGKYHRNLKRAALLAKRYFDIDNVK 146 >UniRef50_A2SQE3 NusA family KH domain protein n=4 Tax=Methanomicrobiales RepID=A2SQE3_METLZ Length = 157 Score = 88.4 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 7/104 (6%) Query: 245 IDP--VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK 302 I+P +G +G +GA ++ S G+++++V ++ + QF+ N P V ++ +ED+ Sbjct: 41 INPGEMGLAIGKKGASIKKASDAF-GKKVEVVEYNPDKVQFIRNCFLPVHVQTVTFEEDE 99 Query: 303 H----TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 I V + AIG+ G+N+ A +L+ + ++ V+ Sbjct: 100 EENTEVAYIEVADTDRGLAIGKEGRNIIKAKKLAFRQFDIANVE 143 >UniRef50_O27128 Transcription termination factor NusA n=6 Tax=Euryarchaeota RepID=O27128_METTH Length = 143 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 4/97 (4%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED---KHT 304 +G +G +G+ V V L + ++++ ++P +F+ N MAPA V SI + + + Sbjct: 45 MGLAIGKKGSTVAKVQKAL-DKGVEVIEHSNDPVEFIKNLMAPAKVRSIRILQKENGEKI 103 Query: 305 MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 + + N AIGR GQN+ A L+ + N+ + Sbjct: 104 ATVETDPKNKRIAIGRGGQNIERARLLARRQHNISNI 140 >UniRef50_P15739 NusA protein homolog n=9 Tax=Halobacteriaceae RepID=NUSA_HALSA Length = 139 Score = 87.6 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHT-MD 306 +GA +G G+RV A+ LG + +V FV NA++PA V ++ V E+ T Sbjct: 43 MGAAIGDGGSRVDALEATLGRSVV-LVEDAPTAEGFVANALSPAAVYNVTVSENDTTVAY 101 Query: 307 IAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 V + AIG +G N+ A +L+ ++ + Sbjct: 102 AEVAHEDKGVAIGADGTNIETAKELAARHFDIDDIQ 137 >UniRef50_D2RUW3 NusA family KH domain protein n=2 Tax=Halobacteriaceae RepID=D2RUW3_9EURY Length = 146 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE-DKHTMD 306 + +G G V+ + G+ + +V D+P FV NA++PA V ++ + E D Sbjct: 50 MSEAIGPEGRTVRQYEERV-GKPVRLVEDADDPEAFVANALSPAAVYNVTISENDDTVAY 108 Query: 307 IAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 + V + AIG NG+ + A L+ + V Sbjct: 109 VEVADEDRGVAIGSNGRTIEAARTLAQRHFGIDDVQ 144 >UniRef50_C6SA73 N utilization substance protein A n=1 Tax=Neisseria meningitidis alpha153 RepID=C6SA73_NEIME Length = 136 Score = 86.8 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 37/88 (42%), Positives = 61/88 (69%), Gaps = 3/88 (3%) Query: 1 MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYE-QEIDVRVQIDRKSGDFDTF 59 M++E+L + EA+++EK + E +F+ALE AL+TA KKK + + +DVRVQI+R +G++ TF Sbjct: 6 MSREMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHMDVRVQINRDTGEYQTF 65 Query: 60 RRWLVV--DEVTQPTKEITLEAARYEDE 85 RRWL+V ++ T P E ++ + Sbjct: 66 RRWLIVADEDYTYPDVEKPSRKSKRKFP 93 >UniRef50_P11523 NusA protein homolog n=15 Tax=Thermoprotei RepID=NUSA_SULAC Length = 143 Score = 85.3 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 5/101 (4%) Query: 245 IDP--VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV--DE 300 I+P +G +G G V+ + +L + ++IV + +N V N M+PA V +I V Sbjct: 41 INPESMGVAIGKNGLNVRKL-EKLINKSVEIVGYQENLEDLVKNLMSPARVKTIKVVQSN 99 Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 K T+ I VE + AIG+NG+NV A + L++ +V Sbjct: 100 SKKTVYITVEPQDKGIAIGKNGRNVERAKLILKRYLDIDSV 140 >UniRef50_Q2LU20 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU20_SYNAS Length = 250 Score = 84.5 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 32/203 (15%) Query: 90 GDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITG-VVKKVNRD 148 GD I + R + ++ + + + D R+ G ++ G +VK VN Sbjct: 61 GDLQVRSIPLSSIGRHAIKRIRRDLSLSLAKIRVLRDYDLSRDLVGRVVEGMIVKAVNHG 120 Query: 149 NISLDLG-------NNAEAVILREDMLPREN--FRPGDRVRGVLYSV----RPEARGAQL 195 ++S+ L N P+E +RPGD + + V ++ Sbjct: 121 SLSIRLQANGSCNPGNLVGSCPYRFQTPKERGTYRPGDVLSFQVLKVSPVMENGMPRLEI 180 Query: 196 FVTRSKPEMLIELFRIEV---PEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACV 252 + R+ ++ L V P + ++ + R G+ +++ V T D Sbjct: 181 TLGRNGRGLVEGLIMKRVWENPSCRD--VKARCVKRIAGAYSEV-VSTAPVSRDA----- 232 Query: 253 GMRGARVQAVSTELGGERIDIVL 275 +++VS EL E I +V Sbjct: 233 ------IKSVSDELK-EYIRVVR 248 >UniRef50_A9A465 NusA family KH domain protein n=6 Tax=Thaumarchaeota RepID=A9A465_NITMS Length = 154 Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 49/105 (46%), Gaps = 4/105 (3%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD---EDKHT 304 +G +G G ++++ + +++V +D++PA+F+ N + V+ + ++ + Sbjct: 47 MGLAIGKGGMHIKSLQN-IVKRNVELVEFDEDPAKFLSNLLNSKLVSEVKINTRADGTKQ 105 Query: 305 MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQ 349 + V+ +GR G+N A L+ ++ +V + Q Sbjct: 106 AIVMVDPRKKGIVVGREGRNAEKARMLAKRYFDITSVLINSPERQ 150 >UniRef50_A1RWW2 NusA family KH domain protein n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RWW2_THEPD Length = 149 Score = 82.6 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 3/99 (3%) Query: 250 ACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIA- 308 VG G++++ + EL + +++V + FV + PA V + V E+ + + Sbjct: 51 LAVGKNGSKIRMI-KELLRKDVEVVEDGSSLEDFVKSVFFPARVVEVKVREENNRKVVIA 109 Query: 309 -VEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQA 346 V L AIGRNG+NV+ A L V + Sbjct: 110 VVPPDQLGLAIGRNGRNVQRAKILLKRYYGADEVRVQRQ 148 >UniRef50_D1CBU2 RNA binding S1 domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU2_THET1 Length = 431 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 15/166 (9%) Query: 69 TQPTKEITL----EAARYEDESLN-LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 P+ +I+ A + E N +G ++ ++ V R ++++ Q+ +E + Sbjct: 191 FIPSSQISFLVSSNDADRQSELANLVGRTLQAKVIEVNRKRNRLILSERIATQERKETSK 250 Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGD 177 ++++ EG+I+ G V + +D+G A+ +I ++ P E +PGD Sbjct: 251 ERLIEEL--REGQIVKGRVTSLADFGAFVDIG-GADGLIHLSEISWGRINHPSEVLKPGD 307 Query: 178 RVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRI-EVPEIGEEVIE 222 V ++ ++ E + L + R++PE +V +I E + Sbjct: 308 EVDVMVLNIDREHKKIALSMKRTQPEPWATAMERYDVGQIVEGEVT 353 Score = 48.3 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 10/93 (10%) Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDML-----PRENFRPGDRVRGVLYSVRPE 189 EI+ GVV + ++ +D+G +E ++ ++ +E+ PG + + + + Sbjct: 79 NEIVDGVVMGFDNGDLIVDVGGKSEGIVPASELTTLSEEEKESLEPGQPIVVSVLNASED 138 Query: 190 ARGAQLFVT--RSKPEMLIELF--RIEVPEIGE 218 G ++ ++ R++ E L ++E EI + Sbjct: 139 NEG-RIVLSVDRARAERLWRELQQKLETGEIVD 170 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 53/125 (42%), Gaps = 7/125 (5%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 EI+ + E L GD V+ + ++ + + +++ + A ++++ Sbjct: 289 SEISWGRINHPSEVLKPGDEVDVMVLNIDREHKKIALS----MKRTQPEPWATAMERYD- 343 Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARG 192 G+I+ G V ++ + + L + E ++ + L + GD++R + + + R Sbjct: 344 -VGQIVEGEVTQIAPFGVFVRLEDGIEGLVHMSE-LGDTKVQVGDKLRLRVIKMDTQRRR 401 Query: 193 AQLFV 197 L V Sbjct: 402 IGLSV 406 >UniRef50_A2ST95 NusA family KH domain protein n=5 Tax=Methanomicrobiales RepID=A2ST95_METLZ Length = 151 Score = 79.9 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDI 307 +G +G G ++ +S L G+RI++V +D++ F+ N PA+VAS+ + I Sbjct: 48 MGIAIGKGGDNIKKMSRVL-GKRIEMVEFDEDREVFIANMFKPAEVASVSYGGRDEPVMI 106 Query: 308 AVEAG-NLAQAIGRNGQNVRLASQLSGW 334 V + AIG+ G + A L Sbjct: 107 TVPERGDFGLAIGKGGSTIEKARILVRR 134 >UniRef50_D1JEK5 Putative NusA protein homolog n=1 Tax=uncultured archaeon RepID=D1JEK5_9ARCH Length = 139 Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 4/97 (4%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH---T 304 +G +G G+ + V + + I++V + +F+ N PA++ S+ + D + Sbjct: 41 MGLAIGKGGSNITKVKNMVR-KDIEVVEHSTDAKEFIENLFRPAEIKSVELLTDDNGKSC 99 Query: 305 MDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 +AV AIG+NG+ ++ L L + V Sbjct: 100 AYVAVLTKQKGIAIGKNGERIKKVKLLVKRNLGIDDV 136 Score = 42.9 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 30/71 (42%) Query: 284 VINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDD 343 + ++ A V VV+ + + + + V+ G++ AIG+ G N+ + ++ V+ Sbjct: 11 IFESLTGAGVKDCVVNSEANKVILVVKKGDMGLAIGKGGSNITKVKNMVRKDIEVVEHST 70 Query: 344 LQAKHQAEAHA 354 + Sbjct: 71 DAKEFIENLFR 81 >UniRef50_UPI0001BCE222 transcription elongation factor NusA n=1 Tax=Campylobacter fetus subsp. venerealis str. Azul-94 RepID=UPI0001BCE222 Length = 124 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 3/108 (2%) Query: 3 KEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRW 62 ++I ++E+++NE L E + E + A A K+ Y E + +D + +++ Sbjct: 2 EKISDIIESIANEICLNFEDVKERIIRAFVNAAKRLYGYECEYEASLDPNTKAIHLYQKI 61 Query: 63 LVVDEVT---QPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITT 107 LVV++ I+L+ A D +L +GD + ++ R Sbjct: 62 LVVEDSDERLDEEHFISLKKAHELDATLEIGDSLNYELNIDELGRTGA 109 >UniRef50_B5YEY5 Ribosomal protein S1, putative n=2 Tax=Dictyoglomus RepID=B5YEY5_DICT6 Length = 552 Score = 78.8 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 74/174 (42%), Gaps = 23/174 (13%) Query: 35 TKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVE 94 K+KY + ++ +I + SG L+ P EI+ + SL +GD V+ Sbjct: 272 FKEKYPEGSIIKAEIIKISGGIVVKVDNLI---GYVPMSEISWGRPQDVKNSLKVGDKVK 328 Query: 95 DQIESVTFDRITTQTAKQVIVQKVREAE---RAMVVDQFREHEGEIITGVVKKVNRDNIS 151 ++ SV Q I +++ E ++ + GEI++G V + I Sbjct: 329 AKVLSVD-------DLNQKIFLSIKQVEPNPWEVIDQNY--KIGEIVSGKVTNITDFGIF 379 Query: 152 LDLGNNAEAVILRE----DMLPR--ENFRPGDRVRGVLYSVRPEARGAQLFVTR 199 +++ E +I R+ + + + F+PGD + + + E + +L ++R Sbjct: 380 IEIKPGLEGLIPRKLISWERISNISDIFKPGDFIEAKIIEIDKENK--KLTLSR 431 Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 62/165 (37%), Gaps = 17/165 (10%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 DF F E P K I+ E + GD++E +I + + +++ + Sbjct: 375 DFGIFIEIKPGLEGLIPRKLISWERISNISDIFKPGDFIEAKIIEIDKENKKLTLSRRDL 434 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPREN-- 172 + + + +++ EG+ I G + + +D ++L E + + E Sbjct: 435 L----KDPWEDIDEKY--REGQNIKGRIIEKLKDGYIVELEPGIEGFLPYT-QINFEKEN 487 Query: 173 ----FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEV 213 F+ + V + V+ R ++ ++ ++ E E+ Sbjct: 488 EIQGFKENEEVEAKI--VKINPRFRRITLS--IKALIKEKLDQEM 528 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 96/216 (44%), Gaps = 19/216 (8%) Query: 19 PREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLE 78 ++ + + L A + + V I+ F V E P KEI + Sbjct: 86 NKKAVENKIWEELLWAYENNQPIQGKV---INYNGRGFILEINNEV--EGFIPAKEIDVP 140 Query: 79 AARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEII 138 + + +E +I+ + ++ + + ++++ +E ER+ + ++ + +I+ Sbjct: 141 PIKP--PKYYINRRIEGKIKRINPEKNQLIISARELLEQKQEEERSNLWEKIKNS--QIV 196 Query: 139 TGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARG 192 G + KV+ D +++DLG ++ ++++ R + GD V+ + S+ +R Sbjct: 197 RGRIIKVDEDKLTVDLGLGIIGIVEKDEISWFPIKNIRRYYNTGDIVKARVLSLDENSRT 256 Query: 193 AQLFVTRSKPEMLIELFRIEVPE---IGEEVIEIKA 225 AQL + +++P LF+ + PE I E+I+I Sbjct: 257 AQLSIKQAQPNP-WSLFKEKYPEGSIIKAEIIKISG 291 >UniRef50_C7NTX6 NusA family KH domain protein n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NTX6_HALUD Length = 142 Score = 78.0 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 3/97 (3%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED--KHTM 305 VG +G G V + L G + +V P FV NA+APA V + ++E + Sbjct: 45 VGKAIGRDGETVARIEDRL-GRDVTLVEDAPTPEGFVANALAPAAVYDVTIEERDGERVA 103 Query: 306 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVD 342 V+ + AIG G+ + LA +L+G + + Sbjct: 104 FADVDEADTGAAIGTEGRTIELARRLAGRHFEIDDIQ 140 >UniRef50_P29157 NusA protein homolog n=12 Tax=Euryarchaeota RepID=NUSA_THECE Length = 145 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAP--ADVASIVVDED---K 302 +G +G +GA V+ V +G E I+++ +NP +F+ N V + + E K Sbjct: 45 MGLALGKKGANVKRVQNMIGKE-IEVIEHSENPEEFLRNIYKSLGVKVKRVHITEKRDGK 103 Query: 303 HTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 + + +AIGR GQN+ L +L + V Sbjct: 104 RVALLDIGPREKPRAIGRGGQNINLVKELMERHHGIQDV 142 Score = 47.9 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 277 DDNPAQFVI--NAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW 334 + + +F+ +M A V ++D+ ++ + ++ G + A+G+ G NV+ + G Sbjct: 6 NTDQIKFIALFESMTGATVLDCLIDDRRNRLIFVIKKGEMGLALGKKGANVKRVQNMIGK 65 Query: 335 ELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDED 368 E+ V+ + + + ++ K + I E Sbjct: 66 EIEVIEHSENPEEFLRNIYKSLGVKVKRVHITEK 99 >UniRef50_B5IGJ7 NusA family KH domain protein n=1 Tax=Aciduliprofundum boonei T469 RepID=B5IGJ7_9EURY Length = 141 Score = 74.5 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 255 RGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD--EDKHTMDIAVEAG 312 G+++Q V L + + +V + + F N V +I V+ +++ ++ + V+ Sbjct: 51 NGSKIQTVRN-LIKKNVMVVEYSPDIVVFTKNIFHRFHVKNIKVENVDNQFSITVFVDPR 109 Query: 313 NLAQAIGRNGQNVRLASQLSGWELNVMTV 341 + A+AIG+ G+N++LA ++ + ++ Sbjct: 110 DKARAIGKEGRNLKLAKEIISRHFPLKSI 138 >UniRef50_P14026 NusA protein homolog n=8 Tax=Methanococcales RepID=NUSA_METVS Length = 173 Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 56/137 (40%), Gaps = 8/137 (5%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDI 307 +GA +G G V+ + + G++ID++ + ++ QF+ N AP ++ + V + + + + Sbjct: 43 IGAAIGKGGENVKNATDKF-GKKIDLIEYSEDLKQFIKNIFAPIELEDVWVKKFGNDLVV 101 Query: 308 AVE--AGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYLDI 365 V IG G+N+ A ++G V + + + + K +I Sbjct: 102 YVRVHPRLRRAIIGDKGKNIDRAVDIAGRLAGVKNIKVVAGLRKDADNR-----PKKDEI 156 Query: 366 DEDFATVLVEEGFSTLE 382 E A + Sbjct: 157 PEKAAESSENVQAEENQ 173 >UniRef50_B1LBI3 RNA binding S1 domain protein n=5 Tax=Thermotogaceae RepID=B1LBI3_THESQ Length = 543 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 16/176 (9%) Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARY-EDESLNLGDYVEDQ-IESVTFDRITTQTAKQV 113 F F R E P E+ R +E ++ GD V+ + I +R T + K Sbjct: 285 FGFFVRLEPGVEGLVPRSEVFWGNTRKSLEEVVSAGDLVKVEVINVDKENRKLTLSYK-- 342 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML----- 168 K + + D++ ++TG V + + ++L E + ++ Sbjct: 343 ---KAKGDPWENIEDRYN--VNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRID 397 Query: 169 -PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELF-RIEVPEIGEEVIE 222 P E + G++V+ + + E R L + R++ +E I I+ Sbjct: 398 EPGEILKIGEKVKVKILKIDKENRKITLSIKRTQENPWERALKELETDSIVSGTIK 453 Score = 56.0 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 119 REAERAMVVDQFREHE-GEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRE 171 R + + + F E + G+I+ G VK ++ + +++ I R ++ P + Sbjct: 169 RALQDKKIEEFFSEKKVGDIVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTRISPED 228 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIE-VPEIGEEVI 221 +PG + + + E + L + R P+ ++ V ++ + Sbjct: 229 IVKPGQNITAKIIELDKEKKNVILSLKRLMPDPWEKVEEKYPVGKVVNGEV 279 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 40/94 (42%), Gaps = 7/94 (7%) Query: 123 RAMVVDQFRE---HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR-ENFRPGDR 178 ++ Q+ G+I+ GVV D + +D G +E + +++ + ++ G+ Sbjct: 7 NDEILSQYEPEEFRRGQIVKGVVIGKEDDGVVVDFGGKSEGFVPVNELIKSLDEYKVGEN 66 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIE 212 + + ++ E R ++ +P + L + Sbjct: 67 LTLQILNLNYEERS---ILSERRPVLRKTLEELR 97 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 62/165 (37%), Gaps = 12/165 (7%) Query: 63 LVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQI-ESVTFDRITTQTAKQVIVQKVREA 121 +VVD + + + + +G+ + QI +R + V+ + + E Sbjct: 37 VVVDFGGKSEGFVPVNELIKSLDEYKVGENLTLQILNLNYEERSILSERRPVLRKTLEEL 96 Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR-VR 180 + ++ + + V + ++ L A + L R N ++ + Sbjct: 97 RKD--YEEKKP-----VKARVVSQTKGGYNVLLKGVVSAFLPGSHSLLRRNDPIPEKEIE 149 Query: 181 GVLYSVRPEARGAQLFVTRS--KPEMLIELF-RIEVPEIGEEVIE 222 ++ + RG ++ V+R + + + E F +V +I E ++ Sbjct: 150 VIILEMVQTKRGPRIVVSRRALQDKKIEEFFSEKKVGDIVEGTVK 194 Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 15/148 (10%) Query: 69 TQPTKEITLEAARYEDESLNLGDYVEDQI-ESVTFDRITTQTAKQVIVQKVREAERAMVV 127 P E++ + ++ + G + +I E + + K+++ + E Sbjct: 212 FIPRSELSYDTRISPEDIVKPGQNITAKIIELDKEKKNVILSLKRLMPDPWEKVEEKY-- 269 Query: 128 DQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRED-------MLPRENFRPGDRVR 180 G+++ G V ++ + L E ++ R + E GD V+ Sbjct: 270 -----PVGKVVNGEVISIHPFGFFVRLEPGVEGLVPRSEVFWGNTRKSLEEVVSAGDLVK 324 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIEL 208 + +V E R L ++K + + Sbjct: 325 VEVINVDKENRKLTLSYKKAKGDPWENI 352 >UniRef50_D1XBA7 RNA binding S1 domain protein n=2 Tax=Streptomyces RepID=D1XBA7_9ACTO Length = 158 Score = 72.6 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 16/135 (11%) Query: 77 LEAARYEDES--LNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHE 134 L R++D S + +G V + T A+ + KV E + R Sbjct: 23 LSWHRFDDPSDVVQVGQRVSCEFMGSD-----THNAEARLSLKVLELDPLQAFAD-RTVV 76 Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRP 188 G+ G V+ V + +DLG+ ++ ++ P E+F G+++ V+ + Sbjct: 77 GQGFRGTVETVAPIGVFVDLGDGIVGLVPSREIDGRPAAGPTEDFEVGEQIAVVVAEIEL 136 Query: 189 EARGAQLFVTRSKPE 203 R ++F++RS Sbjct: 137 PTR--RVFLSRSGSN 149 >UniRef50_Q58447 NusA protein homolog n=4 Tax=Methanocaldococcus RepID=NUSA_METJA Length = 183 Score = 72.2 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 3/117 (2%) Query: 248 VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH--TM 305 VGA +G G V+ + G+++DI+ + D+ +F+ N AP + + V Sbjct: 44 VGAAIGKGGENVKTAEEKF-GKKVDIIEYSDDWRKFIRNIFAPIQLDDVWVKRVGKDVVA 102 Query: 306 DIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKY 362 I + G G+N+ A ++ + + + + + A K Sbjct: 103 FIKINPKVRRAVFGEKGKNLERALKILKRHTKITKIKVIVENQKFKRKRAKRPVVKD 159 >UniRef50_Q9YAU4 NusA protein homolog n=1 Tax=Aeropyrum pernix RepID=Q9YAU4_AERPE Length = 144 Score = 71.8 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 249 GACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK--HTMD 306 G +G G ++ + L G+ I++V + + + V N + SI V E + Sbjct: 48 GRAIGRGGRLIKLLREAL-GKNIEVVEYSSDLERIVKNLFPGVKIESINVRERNGVKQVV 106 Query: 307 IAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTV 341 I V + AIG+ G+NV+ A + V V Sbjct: 107 IKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEKV 141 >UniRef50_A1HTW2 Hydroxymethylbutenyl pyrophosphate reductase n=4 Tax=Veillonellaceae RepID=A1HTW2_9FIRM Length = 655 Score = 70.7 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 23/144 (15%) Query: 105 ITTQTAKQVI---VQKVREAERAMVVDQFREH--EGEIITGVVKKVNRDNISLDLGNNAE 159 I AKQ I +KV E E+ ++ EG+I+TG V ++ + +DLG + Sbjct: 428 IEIDQAKQKIVLSRRKVLEQEQQRRAEELFSRLAEGQIVTGTVSRIADFGVFVDLG-GVD 486 Query: 160 AVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEV 213 +I D+ P E GD V+ + V P+A+ L + R + + ++ Sbjct: 487 GLIHISDLSWHRVKNPTEVVNIGDEVQVFVQKVDPKAKRISLSLKRVQRDPWYDVVE--- 543 Query: 214 PEIGEEVIEIKAAARDPGSRAKIA 237 + E A G K+A Sbjct: 544 -----GLREGMTVA---GKVTKLA 559 Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 15/150 (10%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 DF F VD + +++ + E +N+GD V+ ++ V AK+ I Sbjct: 475 DFGVFVDLGGVDGL-IHISDLSWHRVKNPTEVVNIGDEVQVFVQKVD------PKAKR-I 526 Query: 115 VQKVREAERAMVVDQFRE-HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------ 167 ++ +R D EG + G V K+ + +++ E ++ ++ Sbjct: 527 SLSLKRVQRDPWYDVVEGLREGMTVAGKVTKLAKFGAFVEVKPGVEGLVHLSELADRRVA 586 Query: 168 LPRENFRPGDRVRGVLYSVRPEARGAQLFV 197 +E G V + + E + L + Sbjct: 587 SAQEVVEVGQTVTVKILGIDKENKRISLSI 616 Score = 47.9 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 110 AKQVIVQKVREAERAMVVDQFREHE-GEIITGVVKKVNRDNISLDLGNNAEAVILREDM- 167 + + K++E + ++ + E G I+ G V V +D + +D+G+ E VI ++ Sbjct: 264 IIEEVYSKMQEFD-QLLDQDMKPLEPGVILKGRVVGVRKDEVFVDIGHKGEGVIPLTELA 322 Query: 168 -----LPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIE 222 + GD + + + + + +++ K + ++ +++ E + Sbjct: 323 YPVPENASDVVSEGDEIDVYVLAPEGDDG--PVKLSKVKADNIVAWEKLQAAAQANETVT 380 Query: 223 IKAAARDPG 231 K A G Sbjct: 381 GKVTAVVKG 389 >UniRef50_Q2RIU7 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RIU7_MOOTA Length = 736 Score = 70.3 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 9/102 (8%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSV 186 G ++ G V ++ + + +D+G +E VI ++ P E GD + ++ Sbjct: 363 RRGNVVAGTVVQITDNEVMVDVGGKSEGVIPLNELSHRNVTDPHEVVAVGDTINVMVLRP 422 Query: 187 RPEARGAQLFVTRSKPEMLIELFRIEV---PEIGEEVIEIKA 225 E L R+ + E + EI EVIE+ Sbjct: 423 ENEEGHPVLSKRRADRRVAWEKLEEHLASGEEIQGEVIEVVK 464 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 56/148 (37%), Gaps = 14/148 (9%) Query: 83 EDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVV 142 ED + LG + ++ + + +++ I+++ E E+ G++ G+V Sbjct: 488 EDLNAYLGQTLRLRVIELDRSKNKVVLSRKAILEE--EYEKQRQATWNSLEVGQVRKGIV 545 Query: 143 KKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLF 196 +++ +DLG + ++ ++ PR+ G + + + E ++ Sbjct: 546 RRLTNFGAFVDLG-GVDGLLHVSEISWGRVEHPRDALSEGQEIEVKILGIDREEG--KVS 602 Query: 197 VTRSK--PEMLIELFRIE-VPEIGEEVI 221 + R + P V I E I Sbjct: 603 LGRKQLLPNPWDTAAERYPVGTIVEGKI 630 >UniRef50_Q2S1M7 Ribosomal protein S1, putative n=2 Tax=Rhodothermaceae RepID=Q2S1M7_SALRD Length = 871 Score = 69.9 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 27/195 (13%) Query: 59 FRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQ-- 116 F ++ + V + ++++ + + ++ D + + +R Sbjct: 100 FVSRILEEAVEEASQDLPMPSGDEASVDVSEFDEPTETVSPDELERTEEAQGFTGETYGE 159 Query: 117 --KVREAERAM-------VVDQFRE---------HEGEIITGVVKKVNRDNISLDLGNNA 158 + E E V DQFR+ E +I+ G V +VN D + +D+G + Sbjct: 160 TVSLDELETEEQAPADTSVYDQFRDVVDETSIDVREQDIVEGRVLRVNEDYVVIDIGYKS 219 Query: 159 EAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE 218 + ++ R++ E PGD V L R E R QL +++ + + + V EI E Sbjct: 220 DGIVSRDE-FGEEEIHPGDTVEVYLE--RKEDRDGQLVLSKEQADKVRRW--QRVEEIYE 274 Query: 219 E--VIEIKAAARDPG 231 VIE R G Sbjct: 275 NEEVIEGTIIRRIKG 289 Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 45/111 (40%), Gaps = 9/111 (8%) Query: 92 YVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNIS 151 ++ ++E V D + + ++++R+ + +++ EG+++ G V + Sbjct: 408 ELDQELEVVVLDYEEERQRISLGLKQLRDHPWDQIGNKYD--EGDVVEGKVVSITNYGAF 465 Query: 152 LDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYSVRPEARGAQL 195 +++ E ++ +M P + G V + ++ E R L Sbjct: 466 VEIEKGIEGLVHISEMSWTRHIEHPSQMVSLGQVVDVKILNIDQEERKISL 516 >UniRef50_D1CF08 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CF08_THET1 Length = 785 Score = 69.5 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 58/137 (42%), Gaps = 9/137 (6%) Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRE-RAKNALA 415 D + L + +L G T ++L + +ELL+++G+ + +E ++ + +A Sbjct: 159 DNSLENLQLSPRIRGILRRAGIFTADQLYRLTDEELLKLKGIGKAALEEIKAVKLGDADN 218 Query: 416 TIAQAQEESLGDN-------KPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLA 468 + +E+ D+ ++ ++ + + +L G+ T+ D+ + L Sbjct: 219 KRSIEEEKQRLDDAGIKIPGGISEHPISKLPLSMSIIHRLELAGIKTIGDITGENFSRLQ 278 Query: 469 DIEGLTDEKAGALIMAA 485 +I + A I+ A Sbjct: 279 EIPRIGKVTAKR-ILEA 294 >UniRef50_UPI00017435B0 LytB protein n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00017435B0 Length = 413 Score = 68.7 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 66/166 (39%), Gaps = 22/166 (13%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 D+ F EV E + + + E + +GD VE ++ I ++ + Sbjct: 252 DYGIFVELEKGIEVFIHKNEFSWD--KREHKEYKVGDEVEFKV-------IVIDKIEKKL 302 Query: 115 VQKVREAER---AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML--- 168 +++ E+ V +++ +G I+ + ++ + + L + ++ + ++ Sbjct: 303 SGSIKQLEKSPWKEVTEKY--KKGNIVNTEIVEIQENFALVKLTDRFNGIVPKRELTEDF 360 Query: 169 ---PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRI 211 E F GD+V V+ + + + + ++ K + + E + Sbjct: 361 LKDISEKFSVGDKVEAVITDINEKRK--SIALSLKKVQEMEEKKEL 404 Score = 41.4 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 49/132 (37%), Gaps = 15/132 (11%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM-VVDQFR 131 E++ + E +GD V +I + K + +++ + + Sbjct: 13 SEVSWDQVDNLHERYKIGDEVTAKIIEKDVE-------KNRLKLSIKQLSEDPWIAFENS 65 Query: 132 EHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYS 185 + G+++ VVK V I + + + + ++ +N++ GD+ + Sbjct: 66 HNVGDVVEAVVKDVLDFGIVVTV-DGNSGFVHVSELAWHNGSKELKNYKAGDKFSAKIIQ 124 Query: 186 VRPEARGAQLFV 197 + E + +L V Sbjct: 125 IENEKKNVKLSV 136 >UniRef50_C7NE91 RNA binding S1 domain protein n=3 Tax=Leptotrichia RepID=C7NE91_LEPBD Length = 600 Score = 68.0 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 16/150 (10%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVT-FDRITTQTAKQV 113 D+ F EV E + + + E + +GD VE ++ V D+ + + KQ+ Sbjct: 439 DYGIFVELEKGIEVFIHRNEFSWD--KREHKKYKVGDEVEFKVIIVDKLDKKLSGSIKQL 496 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML----- 168 +EA +G +I + ++ + + + L + ++ + ++ Sbjct: 497 EKSPWKEATEQC-------KKGNVINTEIVEIQENFVLVKLTDRFNGIVPKRELSEEFLK 549 Query: 169 -PRENFRPGDRVRGVLYSVRPEARGAQLFV 197 E F GD+V+ V+ + + + L V Sbjct: 550 DISEKFSIGDKVQAVITDINEKRKSIALSV 579 Score = 44.1 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 79/246 (32%), Gaps = 23/246 (9%) Query: 4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 + A + + NEK + + + E+ K+KY + I + DF Sbjct: 304 KFSAKIIQIENEKKNVKLSVKQLSENP-WNTVKEKYHIGDIIEKPI-TEVFDFGLLISLE 361 Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQI-ESVTFDRITTQTAKQVIVQKVREAE 122 + +++ + GD ++ +I + T +AK ++ + E Sbjct: 362 KDIDGLLHVSDLSYKRESNLTSKYKAGDLIKFKIVDFNDEKNRITLSAKALLDDRWEVLE 421 Query: 123 RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML--PRE--NFRPGDR 178 D TG V V I ++L E I R + RE ++ GD Sbjct: 422 ETYDFD-------NTFTGKVMNVQDYGIFVELEKGIEVFIHRNEFSWDKREHKKYKVGDE 474 Query: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRI---------EVPEIGEEVIEIKAAARD 229 V + V + + + + E E+ EI E + +K R Sbjct: 475 VEFKVIIVDKLDKKLSGSIKQLEKSPWKEATEQCKKGNVINTEIVEIQENFVLVKLTDRF 534 Query: 230 PGSRAK 235 G K Sbjct: 535 NGIVPK 540 Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 12/111 (10%) Query: 120 EAERAMVVDQFREHE---GEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPG 176 E E ++++ + E G+++ GV+ + D LDL E I ++ ++F G Sbjct: 3 EREFEVLLEDYLPEEKKSGDVVEGVITRKELDYGFLDLNAKKEGRIYAHEV---QDFEIG 59 Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVI--EIKA 225 D++ + + + V++ + EL V +I I +IK Sbjct: 60 DKIEVKVLREDDDN----IIVSKFMLDKAKELASFNVDDIVTGEISRKIKG 106 >UniRef50_B9L032 30S ribosomal protein S1 n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L032_THERP Length = 443 Score = 66.0 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 8/140 (5%) Query: 93 VEDQIESVTFDRITTQTAKQVIVQKV-REAERAMVVDQFREHEGEIITGVVKKVNRDNIS 151 V QI+ V F R + + ++ R D G+++ G V V+R+ I Sbjct: 2 VGQQIDEVHFGRQGLGSIPVMDDAEIFRRLLDDPSYDYRLFRYGDVVEGEVMHVDREKIL 61 Query: 152 LDLGNNAEAVILRED---MLPRE--NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLI 206 +D+G E V+ + + P E RPGDRV + +A A L + R++ E Sbjct: 62 VDIGGKCEGVVPSREFQTLSPEELGRLRPGDRVLVFVLQPEDQAGQAILSIDRARQEKTW 121 Query: 207 ELFRIEVPEIGEEVIEIKAA 226 EV E VIE + Sbjct: 122 RRL-QEVFE-AGGVIEAEVV 139 Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 78 EAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEI 137 E ++ D + +G ++ +I + R +++ VQ+ R+A +A +++ EGE Sbjct: 170 EVSKQADMARMVGQRLKLKIIEINRHRNRLILSERQAVQEQRDAMKAQLIETL--REGET 227 Query: 138 ITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEAR 191 G V + + +D+G A+ ++ ++ P E R GD V ++ SV PE R Sbjct: 228 RRGRVTSIADFGVFVDIG-GADGLVHLSEISWTRVKHPSEVLRVGDEVDVMVLSVNPEQR 286 Query: 192 GAQLFVTRSKPEMLIELFRI-EVPEIGEEVIE 222 L + R++PE +++ +V ++ I Sbjct: 287 KIALSIRRTQPEPWMQVASQFQVGQVVRGTIT 318 Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 18/137 (13%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA---MVVDQ 129 EI+ ++ E L +GD V+ + ++ ++ I +R + V Q Sbjct: 254 SEISWTRVKHPSEVLRVGDEVDVMV-------LSVNPEQRKIALSIRRTQPEPWMQVASQ 306 Query: 130 FREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVL 183 F G+++ G + ++ L E +I ++ P E + GD V + Sbjct: 307 F--QVGQVVRGTITQLASFGAFARLQEGVEGLIHVSELAGWRVEHPNEVLQEGDDVIVRV 364 Query: 184 YSVRPEARGAQLFVTRS 200 + P R L + R+ Sbjct: 365 IRIDPARRRIGLSLRRA 381 >UniRef50_B5Y9T3 Ribosomal protein S1 n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y9T3_COPPD Length = 559 Score = 66.0 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 11/141 (7%) Query: 89 LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEG-EIITGVVKKVNR 147 +G + +I V R ++ Q + E ++ + + +I+ G V ++ Sbjct: 150 VGRSLRVKILRVNRKRNQIILTQR---QVLEEEQKERAEKAWLRLKDSDIVRGHVSRITD 206 Query: 148 DNISLDLGNNAEAVILREDM----LPR--ENFRPGDRVRGVLYSVRPEARGAQLFVTRSK 201 + I +DLG+ E + ++++ + + FR GD VR + SV E + L + + Sbjct: 207 EGIFVDLGDGIEGFVPKDELDWRPIKNIAKVFRRGDVVRAKVLSVDEEKKEMVLSIRLAT 266 Query: 202 PEMLIELFRIE-VPEIGEEVI 221 P V ++ + Sbjct: 267 PNPWQLFAEKHNVGDVVSGRV 287 Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 14/150 (9%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTF-DRITTQTAKQV 113 DF F E P + ++ + + +E +N+GD VE + + DR T + + Sbjct: 377 DFGVFVELAPGIEGLVPRRYVSWKRFKDINEVVNIGDQVEVVVLGINIVDRKITLSMRDT 436 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML----- 168 E + + G+++ G V + + +++ + E I + Sbjct: 437 RPDPWEEVVKNI-------QPGQLVRGKVVTIIPQGVFVEIADGVEGFIHISQLSIRRVD 489 Query: 169 -PRENFRPGDRVRGVLYSVRPEARGAQLFV 197 PR+ GD + + + E R L V Sbjct: 490 DPRDAVSEGDEIVAKVIGIDEERRRISLSV 519 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 54/147 (36%), Gaps = 12/147 (8%) Query: 71 PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 P +E++ + ++ +GD+V+ +I Q + + + + V F Sbjct: 307 PAQEVSWKRGAKVEDLYKIGDHVKAKILRFD---PEAQDLILSVKEALGD-PWENVERDF 362 Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLY 184 G G V + + ++L E ++ R + E GD+V V+ Sbjct: 363 P--VGSKAEGTVVNITDFGVFVELAPGIEGLVPRRYVSWKRFKDINEVVNIGDQVEVVVL 420 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRI 211 + R L + ++P+ E+ + Sbjct: 421 GINIVDRKITLSMRDTRPDPWEEVVKN 447 >UniRef50_B0VFT2 Putative Ribosomal protein S1 n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFT2_9BACT Length = 503 Score = 65.7 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 51/116 (43%), Gaps = 14/116 (12%) Query: 112 QVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML--- 168 ++++RE ER + G+I+ G V ++ +DLG E ++ ++ Sbjct: 185 HRQLEEMREQERKETALA-KLKVGDIVKGKVLRMTTFGAFIDLG-GIEGLMHVSEISWQH 242 Query: 169 ---PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVI 221 P++ + G + + + +G ++ ++R +L + F + + E+ E I Sbjct: 243 IVRPQDELKKGQEIEVKILDI----KGEKIALSRKV--LLEDPFEVAMKELHEGDI 292 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 64/162 (39%), Gaps = 24/162 (14%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 EI+ + + L G +E +I + ++I + + E + + + Sbjct: 236 SEISWQHIVRPQDELKKGQEIEVKILDIKGEKIALS------RKVLLEDPFEVAMKELH- 288 Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYS 185 EG+II V +++ +L E +I +M PR+ + GD V+ + Sbjct: 289 -EGDIINCRVLRLHNFGAFAELKPGVEGLIPISEMSRNRNISHPRDIVKEGDWVQVQILR 347 Query: 186 VRPEARGAQLFVTRSKPE-----MLIELFRIEVPEIGEEVIE 222 + + ++ ++ E + E+ ++E P E ++E Sbjct: 348 IDEDTH--KISLSLKALEADPWDKIDEIIQLETP--FEGIVE 385 >UniRef50_C7NV64 Ribosomal protein L32e n=2 Tax=Halobacteriaceae RepID=C7NV64_HALUD Length = 335 Score = 64.9 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 51/155 (32%), Gaps = 26/155 (16%) Query: 353 HAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 412 T I E+ A L E GF T+++L L E+ G+ ++ + Sbjct: 3 DEEPTELTDVSGIGEETAGALRESGFETIDDLREADEDALTEVTGIGNALAARIKADVGD 62 Query: 413 A--------------------------LATIAQAQEESLGDNKPADDLLNLEGVDRDLAF 446 A E D DDL ++ GV A Sbjct: 63 VEVDEDAEAEIEESEESTADSDADASDDAADEADAEPEEDDAAAYDDLTDISGVGEGTAE 122 Query: 447 KLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGAL 481 L G T+ED+A DL ++EG+ + A + Sbjct: 123 NLREAGFETVEDVARAEQSDLTEVEGIGNALAARI 157 >UniRef50_A9B766 RNA binding S1 domain protein n=6 Tax=Chloroflexi (class) RepID=A9B766_HERA2 Length = 397 Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 56/123 (45%), Gaps = 9/123 (7%) Query: 89 LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD 148 +G + ++ V DR +++ +Q+ R++++ +++ G ++TG V ++ Sbjct: 166 VGQNIPLKVIEVDRDRNRLVLSERAAMQRWRQSQKERLLETLEP--GAVVTGRVNQLTPF 223 Query: 149 NISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 +DLG A+ + ++ PRE +PG V+ + V + L + R +P Sbjct: 224 GAFIDLG-GADGLAHISELSWQRVNHPREVLQPGQEVQVYVLEVDRDRERIGLSLRRLQP 282 Query: 203 EML 205 + Sbjct: 283 DPW 285 Score = 48.3 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%) Query: 127 VDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRED--MLPRE---NFRPGDRVRG 181 D R G++ G+V +V I +D+G E VI +D LP E + GD ++ Sbjct: 21 YDYQRPERGQLREGIVMRVEDSQILVDIGAKHEGVIPNQDLRRLPPELVSGIKNGDTLQV 80 Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFR 210 + PE++ +L ++ + ++ + Sbjct: 81 YVME--PESKEGELVLSLNMVQVERDWQE 107 >UniRef50_Q1IY12 RNA binding S1 n=9 Tax=Deinococci RepID=Q1IY12_DEIGD Length = 587 Score = 64.1 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 13/129 (10%) Query: 87 LNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVN 146 + +GD V+ Q+ V R + + + Q V+++ G+ + G V + Sbjct: 291 VKVGDKVQVQVIDVDEGRERINLSMKSLTQD----PWEGAVEKYH--IGQRVRGKVTNLT 344 Query: 147 RDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYSVRPEARGAQLFVTR 199 ++L E ++ +M P E + GD V V+ + P+ R L + + Sbjct: 345 NFGAFVELEPGLEGLVHVSEMSWTKRVRHPNEVLKEGDEVEAVILRIDPKERRISLGIRQ 404 Query: 200 SKPEMLIEL 208 + + L Sbjct: 405 TTDDPWSAL 413 Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 14/88 (15%) Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPREN---------FRPGDRVRGVLYS 185 G+I+ G V + ++ I++D+G E +I + E ++PGD++ + Sbjct: 72 GDIVDGTVVFIGQEGIAVDVGAKVEGIIPLN-QIGDEPVTLEQAQQMYKPGDQIEAYVVR 130 Query: 186 VRPEARGAQLFVT--RSKPEMLIELFRI 211 V Q+ ++ R+ + + Sbjct: 131 VDLANN--QIVLSKKRADQDKGWRVLER 156 Score = 46.4 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 68/192 (35%), Gaps = 20/192 (10%) Query: 36 KKKYEQEIDVRV-----QIDRKSGDFDTFRRWL--VVDEVTQPTKEITLEAA---RYEDE 85 KK+ +Q+ RV + D ++ + + + +V +V + R D Sbjct: 142 KKRADQDKGWRVLERMQEQD-EAFEVEVLEKVRGGLVAQVEGIRAFLPASQVDTRRVNDL 200 Query: 86 SLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKV 145 +G + ++ + R + + I++ + R + + G G V ++ Sbjct: 201 DPYVGKPLMVKLIELNRKRNRVIISHRAILEAQKAKAREQTIGKLVP--GAQFEGEVVEI 258 Query: 146 NRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTR 199 + ++LG + ++ R ++ PR+ + GD+V+ + V L + Sbjct: 259 TDFGVFVNLG-GIDGLVHRSELTYGRFNHPRDVVKVGDKVQVQVIDVDEGRERINLSMKS 317 Query: 200 SKPEMLIELFRI 211 + Sbjct: 318 LTQDPWEGAVEK 329 Score = 43.3 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 21/157 (13%) Query: 56 FDTFRRWLVVDEVTQPTKEITL-EAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 F F E E++ + R+ +E L GD VE I + ++ I Sbjct: 346 FGAFVELEPGLEGLVHVSEMSWTKRVRHPNEVLKEGDEVEAVILRIDPK-------ERRI 398 Query: 115 VQKVREAERA---MVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM---- 167 +R+ + D++ G + G + + + +++ E +I ++ Sbjct: 399 SLGIRQTTDDPWSALPDRYPP--GTPVKGKITGMTDFGVFMEIEEGIEGLIHISELDTQR 456 Query: 168 --LPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 P + F+ GD + V+ ++ P + A ++R + Sbjct: 457 VNNPADLFKKGDEIEAVILNIDPVEQRA--SLSRRRA 491 >UniRef50_C0GDV0 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDV0_9FIRM Length = 678 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 10/99 (10%) Query: 120 EAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRED------MLPRENF 173 E + +F G+++TG V +V+ D + +D+G +E V+ R++ + + Sbjct: 293 EVSLDQEIKEFSA--GDVVTGTVVQVSDDEVLVDIGYKSEGVLPRQEVILEGDQMLADVM 350 Query: 174 RPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIE 212 G V + V + ++ ++R E + +E Sbjct: 351 ENGQEVEVAVKKVDDQEG--RIILSRKAIERKQKWAELE 387 Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 88/235 (37%), Gaps = 31/235 (13%) Query: 5 ILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDF-DTFRRWL 63 I V+ + NEK ++ A E K++ D +G + Sbjct: 269 IKEVIGKMENEKNTELQEEQTATEEVSLDQEIKEFSAG-------DVVTGTVVQVSDDEV 321 Query: 64 VVD-----EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118 +VD E P +E+ LE + + + G VE ++ V +++ I +K Sbjct: 322 LVDIGYKSEGVLPRQEVILEGDQMLADVMENGQEVEVAVKKVDDQEGRIILSRKAIERKQ 381 Query: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRED----MLPRENFR 174 + AE ++ G I++G VK+ + ++LG +A + +P N Sbjct: 382 KWAELEKAFEE-----GTILSGKVKEAVPAGLVVELGGGYDAFMPGSLVDVRYIPDFNEF 436 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIE-------LFRIEVPEIGEEVIE 222 G + + +RPE +L ++R + L +E +I + ++ Sbjct: 437 QGQEISFKIIEMRPEKE--KLILSRKQVLEEEAAVQKDKVLAELEPGQIIKGTVK 489 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 55/125 (44%), Gaps = 9/125 (7%) Query: 90 GDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDN 149 G + +I + ++ +++ ++++ ++ V+ + G+II G VK++ Sbjct: 438 GQEISFKIIEMRPEKEKLILSRKQVLEEEAAVQKDKVLAELEP--GQIIKGTVKRLTNFG 495 Query: 150 ISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPE 203 +D+G + ++ ++ P E GD + + V PE L + +++P+ Sbjct: 496 AFVDVG-GIDGLVHISEISWHRIDNPGEVLSVGDEIEVKVIEVIPERERIGLSLRQAQPD 554 Query: 204 MLIEL 208 E+ Sbjct: 555 PWTEV 559 Score = 49.1 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 18/144 (12%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA---MVVDQ 129 EI+ E L++GD +E ++ I ++ I +R+A+ V + Sbjct: 510 SEISWHRIDNPGEVLSVGDEIEVKV-------IEVIPERERIGLSLRQAQPDPWTEVGQK 562 Query: 130 FREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVL 183 F G+++ G V ++ ++L E ++ + P E + GD V+ + Sbjct: 563 FSA--GDVVEGKVTRIVDFGAFVELIPGVEGLVHISQLANYHVKQPSEVVQQGDVVKVKI 620 Query: 184 YSVRPEARGAQLFVTRSKPEMLIE 207 + + + L + + P E Sbjct: 621 LDINTDGKRVSLSMRDAAPRPKKE 644 >UniRef50_A8F7S1 RNA binding S1 domain protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F7S1_THELT Length = 539 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 22/125 (17%) Query: 120 EAERAMVVDQFREHE----GEIITGVVKKVNR-DNISLDLGNNAEAVILREDMLPR-ENF 173 E E+ ++ + G ++ VV ++N + IS+D G E +I + +++ E + Sbjct: 4 EHEKMENFQEYLDFVETNPGSVVEAVVTRINPAEGISVDFGGKGEGIIQQNELIHSIEKY 63 Query: 174 RPGDRVRGVLYSVRPE-------ARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAA 226 G +++ + + E + + R L + + ++P ++ K Sbjct: 64 SVGQKIKAQILKINDEEGYALLSEKRPYI---REMRNTLRKAYESKIP------VKGKIV 114 Query: 227 ARDPG 231 PG Sbjct: 115 QTIPG 119 Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 56/128 (43%), Gaps = 12/128 (9%) Query: 87 LNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVN 146 +G V+ ++ + ++ + + K + VV ++ EG++++G + ++ Sbjct: 319 FKIGQIVQAEVIEIDPEKHRIALSYK----KAKGDPWEEVVQKYN--EGDVVSGKIVRIL 372 Query: 147 RDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRS 200 + ++L + + + ++ P + F+ DR+ + S+ + R +L V + Sbjct: 373 PAGVIVELEDGVSGFVPKSELSWNKVKDPTDLFKEKDRLNVKILSIDKQKRRMRLSVKQL 432 Query: 201 KPEMLIEL 208 P+ E+ Sbjct: 433 TPDPWDEV 440 Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 47/113 (41%), Gaps = 10/113 (8%) Query: 119 REAERAMVVDQFRE--HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPR 170 R+A + +F G+ I G V+ + ++ +D + +A + R +M P Sbjct: 171 RKALLERLKKEFFNTHKVGDEIEGTVESIRMNHAIIDF-DGIKAFLPRSEMSHDPSVSPD 229 Query: 171 ENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIE-VPEIGEEVIE 222 + + D+++ + + P + + +P+ +++ V + + ++ Sbjct: 230 DILKKNDQIKVKIIEINPARSSITVSLKALEPDPWLKVSERYSVGTVVQGTVK 282 >UniRef50_P46836 30S ribosomal protein S1 n=166 Tax=Actinobacteria (class) RepID=RS1_MYCLE Length = 481 Score = 63.0 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 10/99 (10%) Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRP 188 G+I+ G + KV+RD + LD+G E VI ++ P E GD V ++ + Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLT--K 93 Query: 189 EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAA 227 E + +L +++ + + + + E+ +K Sbjct: 94 EDKEGRLILSKKRAQYERAW--GTIEALKEKDEAVKGIV 130 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 14/142 (9%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDR-ITTQTAKQVIVQKVREAERAMVVDQFR 131 E++ + + E + +G+ V ++ V DR + + K R R Sbjct: 238 SELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHA----- 292 Query: 132 EHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRPGDRVRGVLYS 185 G+I+ G V K+ + + E ++ ++ +P + GD + Sbjct: 293 --IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVID 350 Query: 186 VRPEARGAQLFVTRSKPEMLIE 207 + E R L + ++ + + E Sbjct: 351 IDLERRRISLSLKQANEDYIEE 372 Score = 42.2 bits (98), Expect = 0.041, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 76/208 (36%), Gaps = 31/208 (14%) Query: 19 PREKIFEALESALATATKKKYEQEIDVR---VQIDRKSGDFDTFRRWLVVDEVTQPTKEI 75 E A++ + K + V V++DR + E P +E+ Sbjct: 18 SSEDFLAAIDKTI-----KYFNDGDIVEGTIVKVDRD----EVLLDIGYKTEGVIPAREL 68 Query: 76 TLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEG 135 +++ +E +++GD VE + + + + ++ +K + ERA + + + Sbjct: 69 SIKHDVDPNEVVSVGDEVEALVLTKE-----DKEGRLILSKKRAQYERAWGTIEALKEKD 123 Query: 136 EIITGVVKKVNRDNISLDLGNNAEAVILRE--DMLPRENFRP--GDRVRGVLYSVRPEAR 191 E + G+V +V + + LD+G + +M + +P G + + + Sbjct: 124 EAVKGIVIEVVKGGLILDIG--LRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRN 181 Query: 192 GAQLFVTRSKPEMLIELFRIEVPEIGEE 219 + ++R E+ E Sbjct: 182 N--VVLSR------RAWLEQTQSEVRSE 201 >UniRef50_B1I3Y7 Hydroxymethylbutenyl pyrophosphate reductase n=3 Tax=Clostridiales RepID=B1I3Y7_DESAP Length = 677 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 46/103 (44%), Gaps = 10/103 (9%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRPGDRVRGVLYSV 186 G+I+ GV+ +V +D + +D+G +E V+ ++ P E + GD + + V Sbjct: 319 RSGDIVRGVIVQVGQDEVLVDVGAKSEGVVPLRELSCYDVSSPDEVVQVGDEIDVWV--V 376 Query: 187 RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARD 229 + E ++ +++ + + + + + ++ R+ Sbjct: 377 KAEDNEGRIILSKGRADAVKAW--DTLDKAFHGGETVRGVVRE 417 Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 53/129 (41%), Gaps = 9/129 (6%) Query: 89 LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD 148 +G + +I + R +++V++++ E R EG+++ GVV+++ + Sbjct: 450 VGREISARIIELNKARKKVILSRKVLLEE--EYSRKRKETLETTQEGDVVKGVVRRLTQF 507 Query: 149 NISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 +D+G + ++ ++ P E + GD + + + E L + + P Sbjct: 508 GAFVDIG-GLDGLLHISEISWHRINHPSEVLKVGDELEVQVLRIDRENEKVSLSLKQVLP 566 Query: 203 EMLIELFRI 211 ++ Sbjct: 567 NPWEQVVEN 575 Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 12/131 (9%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 EI+ + E L +GD +E Q+ + + + Q + VV+ + Sbjct: 523 SEISWHRINHPSEVLKVGDELEVQVLRID---RENEKVSLSLKQVLPN-PWEQVVENYP- 577 Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSV 186 G +++ V ++ ++L E ++ + P + G ++ + SV Sbjct: 578 -VGSVVSARVVRLVPFGAFVELEPGVEGLVHISHLADWHVAKPEDVIAEGQQINVKVLSV 636 Query: 187 RPEARGAQLFV 197 E + +L + Sbjct: 637 DDENKRIRLSL 647 Score = 43.7 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 20/170 (11%) Query: 67 EVTQPTKEITLEAARYEDESLNLGDYVEDQI--ESVTFDRITTQTAKQVIVQKVREAERA 124 E P +E++ DE + +GD ++ + RI + V+ Sbjct: 345 EGVVPLRELSCYDVSSPDEVVQVGDEIDVWVVKAEDNEGRIILSKGRADAVK-----AWD 399 Query: 125 MVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR--ENFR--PGDRVR 180 + F GE + GVV++V + + +DLG + + + E+ G + Sbjct: 400 TLDKAFHG--GETVRGVVREVVKGGLLVDLG--VRSFLPASQVERGYVEDLSQYVGREIS 455 Query: 181 GVLYSVRPEARGAQLFVTRSK--PEMLIELFRIEVPEIGEEVIEIKAAAR 228 + + + ++ ++R E + + E + +K R Sbjct: 456 ARIIELNKARK--KVILSRKVLLEEEYSRKRKETLETTQEGDV-VKGVVR 502 >UniRef50_A4J3N5 Hydroxymethylbutenyl pyrophosphate reductase n=3 Tax=Clostridia RepID=A4J3N5_DESRM Length = 672 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 14/107 (13%) Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRPGDRVRGVLY 184 GE++ G+V +V D + +D+ +E VI R++M +E + GD + V+ Sbjct: 294 SPQAGELVKGIVVQVGMDEVLVDIRAKSEGVIPRKEMAFYGVDNLQEIVKVGDEIECVV- 352 Query: 185 SVRPEARGAQLFVT--RSKPEMLIELFRIEVPEIGEEVIEIKAAARD 229 ++ E ++ ++ R+ E + + + I IK R+ Sbjct: 353 -IKAEDNEGKIILSKERADAEKAWDGLEEA---MEQGTI-IKGVVRE 394 Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 52/123 (42%), Gaps = 9/123 (7%) Query: 89 LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD 148 L E ++ + R +++ ++++ +R ++ EG+I+ G+V+++ Sbjct: 427 LNQEFEVRVIEMNKQRKKVVVSRKAVLEEQNARKREELLASL--QEGQIVKGIVRRITNF 484 Query: 149 NISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 +DLG + ++ +M P+E + GD + ++ V + L + + P Sbjct: 485 GAFVDLG-GLDGLLHISEMSWHRINHPQEVVKVGDELEVMVLKVDTQNEKISLGLKQVLP 543 Query: 203 EML 205 Sbjct: 544 NPW 546 Score = 43.3 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 64/168 (38%), Gaps = 16/168 (9%) Query: 67 EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMV 126 E P KE+ E + +GD +E + + K ++ ++ +AE+A Sbjct: 322 EGVIPRKEMAFYGVDNLQEIVKVGDEIECVVI-----KAEDNEGKIILSKERADAEKAWD 376 Query: 127 VDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRE--DMLPRENFRP--GDRVRGV 182 + +G II GVV++V + + +D+G A + + E+ Sbjct: 377 GLEEAMEQGTIIKGVVREVVKGGMLVDVG--VRAFLPASLVERGYVEDLSKYLNQEFEVR 434 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIE--VPEIGEEVIEIKAAAR 228 + + + + ++ V+R + E + + E I +K R Sbjct: 435 VIEMNKQRK--KVVVSRKAVLEEQNARKREELLASLQEGQI-VKGIVR 479 >UniRef50_D1C7V0 RNA binding S1 domain protein n=2 Tax=Chloroflexi RepID=D1C7V0_SPHTD Length = 459 Score = 62.2 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 63/149 (42%), Gaps = 10/149 (6%) Query: 81 RYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITG 140 + D + +G + +I + R +++ +Q+ R+ + ++++ EGE G Sbjct: 176 KQADMARLIGSKLSLKIIEINRHRNRLILSERQAIQERRDVMKERLIEELT--EGETRRG 233 Query: 141 VVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQ 194 V + +D+G A+ ++ ++ P E + G+ V + + E + Sbjct: 234 RVTSITDFGAFVDIG-GADGLVHLSELSWSRVKHPSEVLKVGEEVDVYVLGINAEEKKIA 292 Query: 195 LFVTRSKPEMLIEL-FRIEVPEIGEEVIE 222 L + R++PE + + EV ++ + Sbjct: 293 LSIKRTQPEPWSRVAMKYEVGQLVLGTVT 321 Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 7/95 (7%) Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDML-----PRENFRPGDRVRGVLYSVRPE 189 G++I G + V+RD + +D+G+ +E +I + R GD V + + Sbjct: 48 GDVIEGQIMHVDRDELLVDIGSKSEGIIPAREFSTLTDEERAALSVGDHVLVFVVQAENQ 107 Query: 190 ARGAQLFVTRSKPEMLIELFRI--EVPEIGEEVIE 222 A L + R++ E + E EI E + Sbjct: 108 EGQAVLSIDRARQEKSWRRLQEIYEAGEIIEAEVT 142 >UniRef50_Q5SJ64 DNA polymerase beta family (X family) n=4 Tax=Thermus RepID=Q5SJ64_THET8 Length = 575 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 4/103 (3%) Query: 381 LEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGV 440 +EE+A + L+E+ G+ E + E + + + +E S + +++ + GV Sbjct: 44 IEEIAEKGKEALMELPGVGPDLAEKILEFLRT--GKVRKHEELSRKVPRGVLEVMEVPGV 101 Query: 441 DRDLAFKLAAR-GVCTLEDL-AEQGIDDLADIEGLTDEKAGAL 481 A L G+ +LE L A DL ++G ++A + Sbjct: 102 GPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERI 144 >UniRef50_A9AV75 RNA binding S1 domain protein n=5 Tax=Chloroflexi (class) RepID=A9AV75_HERA2 Length = 415 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 81 RYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITG 140 + D + +G + +I + R +++ VQ+VR++ + ++++ G + TG Sbjct: 182 KQSDMAKLVGQTLPLKIIEINRSRNRLILSERQAVQEVRDSRKDQLLEKLEP--GAVRTG 239 Query: 141 VVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQ 194 V + +D+G A+ ++ ++ P E + GD V + SV + + Sbjct: 240 RVTSLCDFGAFVDIG-GADGLVHLSELSWSRVKHPEEVLKVGDAVSVYILSVDEDKKRIA 298 Query: 195 LFVTRSKPEML 205 L + R++ E Sbjct: 299 LSIKRTQAEPW 309 Score = 54.5 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 12/129 (9%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 E++ ++ +E L +GD V I SV D+ + +++ + V D++ Sbjct: 263 SELSWSRVKHPEEVLKVGDAVSVYILSVDEDKKRIALS----IKRTQAEPWTTVTDRY-- 316 Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSV 186 G+ ++GVV ++ + L + E +I +M PR+ GD V + + Sbjct: 317 QIGQSVSGVVTQLTAFGAFVRLEDGIEGLIHISEMSDERIQHPRDVINEGDSVSARIIRI 376 Query: 187 RPEARGAQL 195 P + L Sbjct: 377 DPTRKRIGL 385 Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 5/100 (5%) Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLP-----REN 172 + E R D G+ + G + +V+RD + +D+G+ +E V+ +M R Sbjct: 37 LEEYLRDPAHDYRNLKYGDSVDGTIVRVDRDEVLVDIGSKSEGVVPGREMTSLSSEERAE 96 Query: 173 FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIE 212 + GD + + L + +++ E ++ Sbjct: 97 LKVGDVLLVTVVQTEDAEGRIVLSIDKARQEKSWRALQVN 136 >UniRef50_C5A6V0 RecJ-like phosphoesterase, containing RNA binding S1 and OB-fold nucleic acid binding domain n=5 Tax=Thermococcus RepID=C5A6V0_THEGJ Length = 804 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 4/109 (3%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGA 193 G + G + +V R + + L + +I R+D+L ++PG+ + + VRP+ R Sbjct: 195 IGNVYKGTIDRVERFGVFVKLNPHVVGLIKRKDLLGGREYKPGEEILVQVLDVRPDKREI 254 Query: 194 QLFVT-RSKPEMLIELFRIEVPEIGE--EVIEIKAAARDPGSRAKIAVK 239 L + + + + V I E + + K R G +I V Sbjct: 255 DLIESALKNYKTVTVRKELPVTPIAELSKDMAGKTV-RIQGRVTQIQVT 302 >UniRef50_A4QP01 Pdcd11 protein n=4 Tax=Clupeocephala RepID=A4QP01_DANRE Length = 932 Score = 60.7 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 13/88 (14%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRPGDRVRGVLYSV 186 G+I+ G V + + + + +G + +I R + P + F PG +V+ + SV Sbjct: 440 KVGQIVEGTVIDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLSV 499 Query: 187 RPEARGAQLFVTRSKPEMLIELFRIEVP 214 + + L +TR L +P Sbjct: 500 EAQKK--LLILTRK-----KALVESTLP 520 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 138 ITGVVKKVNRDNISLDLG-NNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLF 196 ++G V+ V +D+G ++A + ++ +++ G V ++ V+ R + Sbjct: 185 LSGCVESVEDHGYLVDIGIGGSKAFLPKKSTSSKQDLYVGQYVLVLIEDVKDSGR--VVR 242 Query: 197 VTRSKPEMLIELFR 210 ++++ ++ Sbjct: 243 LSQNPQALVKACAE 256 >UniRef50_Q30ZT8 SSU ribosomal protein S1P n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30ZT8_DESDG Length = 482 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 21/217 (9%) Query: 18 LPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITL 77 + R + EA + K + V V I R + F F E E+ Sbjct: 175 VSRRVLLEAQQEESRKEYMKTLNEGDVVDVCITRLTN-FGAFAELAPGVEGLIHISELGW 233 Query: 78 EAARYEDESLNLGDYVEDQ---IESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHE 134 + DE++ GD + + IES +AKQV+ E V D+ Sbjct: 234 ARVQSADEAVTQGDTLRAKVLKIESTAKGLRIALSAKQVM-----EDPWNTVADRLAA-- 286 Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYSVR 187 G ++ G V + +++ E ++ +M + PGD V + + Sbjct: 287 GTVVEGKVVRCTPFGAFVEVLPGIEGLVHISEMSWTRRILKAEDVVIPGDTVSVKIKDID 346 Query: 188 PEARGAQLFVTRSKPEMLIELFRIEVP--EIGEEVIE 222 R L + ++ + P E+ +E Sbjct: 347 SAKRRISLSLREAEGDPWDGAAEKFAPGTEV-TGTVE 382 Score = 46.0 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 18/150 (12%) Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARYEDESLNL-GDYVEDQIESVTFDRITTQTAKQVI 114 F F L E E++ + E + + GD V +I+ + +AK+ I Sbjct: 300 FGAFVEVLPGIEGLVHISEMSWTRRILKAEDVVIPGDTVSVKIKDID-------SAKRRI 352 Query: 115 VQKVREAE---RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML--P 169 +REAE ++F G +TG V+K + + +++ ++ + + P Sbjct: 353 SLSLREAEGDPWDGAAEKFAP--GTEVTGTVEKCAKFGMFVNIAPGITGLLPQSRISAAP 410 Query: 170 RENF---RPGDRVRGVLYSVRPEARGAQLF 196 + +PGD V + + P R L Sbjct: 411 KSGLAGCKPGDTVTLAVMEINPAERKVTLT 440 >UniRef50_D1B5G8 RNA binding S1 domain protein n=3 Tax=Synergistaceae RepID=D1B5G8_THEAS Length = 504 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 7/103 (6%) Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR---ENF---RPGDRVRGVLYSVRP 188 G ++ G V D +D+G E + R + R E + GDR+R + +V Sbjct: 35 GSVVEGTVVDAREDGWLVDVGYKCEGFLPRREWSHRAIVEKVGEPQVGDRIRVQVTNVGQ 94 Query: 189 EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 AQL ++R + E +E +VIE++ + G Sbjct: 95 GE-EAQLNLSRWRCEFDERWNALEEKLAQSDVIEVEGIRKVKG 136 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 13/149 (8%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 DF F E +++ ++ E L G VE I V DR + + Sbjct: 308 DFGAFVEIEPGVEGLIHIGDLSWSRVKHPKEVLKKGQEVEVVILEVDGDRRRIGLGLKQL 367 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------ 168 A V +++ + +++T V ++ +++ + E +I + Sbjct: 368 NDP-----WANVSEKYS--KDQVVTVKVVRLADFGAFVEIEDGVEGLIHISQLSRQRVEK 420 Query: 169 PRENFRPGDRVRGVLYSVRPEARGAQLFV 197 P + R G V+ + V P + +L + Sbjct: 421 PSDVLREGQEVQAKILEVNPSEKRIRLSL 449 Score = 45.6 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 18/134 (13%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAM---VVDQ 129 E++ + + + GD V+ ++ I + +++A+ V + Sbjct: 240 TELSWQRGAKAKDLVQKGDKVKVKV-------IGIDRENNRVSLSLKQAQEDPWVGVTSR 292 Query: 130 FREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVL 183 + G+ GVV + +++ E +I D+ P+E + G V V+ Sbjct: 293 WT--VGQRTKGVVTNLADFGAFVEIEPGVEGLIHIGDLSWSRVKHPKEVLKKGQEVEVVI 350 Query: 184 YSVRPEARGAQLFV 197 V + R L + Sbjct: 351 LEVDGDRRRIGLGL 364 Score = 44.5 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 57/136 (41%), Gaps = 13/136 (9%) Query: 78 EAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE--HEG 135 E R + + +G ++ + +++ I+ + E A + ++F HEG Sbjct: 156 EEGRGINPANLVGKTFPVKLVEKDRRKRRLVLSRRSIL----DEEMASLREEFYANVHEG 211 Query: 136 EIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPE 189 +I+ G V + + ++LG E ++ ++ ++ + GD+V+ + + E Sbjct: 212 DILEGEVSSITSFGVFVNLGAM-EGLVHITELSWQRGAKAKDLVQKGDKVKVKVIGIDRE 270 Query: 190 ARGAQLFVTRSKPEML 205 L + +++ + Sbjct: 271 NNRVSLSLKQAQEDPW 286 >UniRef50_B6AR90 Ribosomal protein S1 n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AR90_9BACT Length = 591 Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 25/201 (12%) Query: 12 VSNEKALPREKIFEALESALATATKKKYEQEIDVR-VQIDRKSGDFDTFRRWLVVDEVTQ 70 +S EKA R K+++A+E ++ + + I R G V + Sbjct: 109 LSKEKA-DRMKVWDAIEE--------QFNRSDVIEGRIISRIKGGMTV----DVGLKAFL 155 Query: 71 PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 P +I L R D +G ++ +I + R +++V++++ R+ + + +D Sbjct: 156 PGSQIDLRPVRDMDRL--IGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDAL 213 Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLY 184 EGEI+ G+VK + +DLG + ++ DM P+E GD+V V+ Sbjct: 214 --KEGEILEGIVKNITDYGAFIDLG-GIDGLLHITDMSWGRVTNPQEFMNVGDKVNVVVL 270 Query: 185 SVRPEARGAQLFVTRSKPEML 205 E L + + P+ Sbjct: 271 KHDKETGRVSLGLKQLTPDPW 291 Score = 51.4 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 4/103 (3%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPREN--FRPGDRVRGVLYSVRPEAR 191 EG ++ G V ++ + + +D+G +E I + + E + D + L Sbjct: 46 EGSVVEGRVIEIYPNEVVVDIGYKSEGHISKSEFSEEEIQALKVDDIIHVYLEEREDVNG 105 Query: 192 GAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 L ++ + + + +VIE + +R G Sbjct: 106 NLVLSKEKADRMKVWDAIEEQFN--RSDVIEGRIISRIKGGMT 146 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 16/132 (12%) Query: 73 KEITLE-AARYEDESLNLGDYVEDQI-ESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 E++ ++ + +++GD +E Q+ + +R + KQ+ + E Sbjct: 331 TEMSWNHEVKHPSKIMSVGDTIEVQVLKIDEKNRKISLGLKQLGPNPWDDVETKY----- 385 Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVL 183 G +++G +K + + L + +I DM P E F+ G +V V+ Sbjct: 386 --PVGAVVSGKIKSLTDFGAFVGLDEGIDGLIHISDMSWTKHVRHPSEVFKKGQKVEVVV 443 Query: 184 YSVRPEARGAQL 195 + E + L Sbjct: 444 LKIEKERQRLSL 455 >UniRef50_Q67NT8 30S ribosomal protein S1 n=1 Tax=Symbiobacterium thermophilum RepID=Q67NT8_SYMTH Length = 441 Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 10/101 (9%) Query: 132 EHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR-------ENFRPGDRVRGVLY 184 G+I+ G V +V+ D+I +D+G +E +I ++ R + GD V+ V+ Sbjct: 53 PKPGDIVRGQVVRVSDDSIMVDVGYKSEGIIPLNELSHRPLRSAHDAGLKVGDEVQVVVL 112 Query: 185 SVR-PEARGAQLFVTRSKPEMLIELFRI--EVPEIGEEVIE 222 SV G ++ R+ ++ E E+ E + Sbjct: 113 SVDTKGEGGLRISKRRADEQLAWAEVERKFEAGEVIEAEVT 153 Score = 51.4 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 18/144 (12%) Query: 89 LGDYVEDQI-ESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE--HEGEIITGVVKKV 145 +G + +I E + + KQV+ EAER ++F EG+++ G VK + Sbjct: 187 VGQKIRVKIIELDPYKGRVILSRKQVL-----EAERTAARERFWSTVQEGDVLEGTVKSI 241 Query: 146 NRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTR 199 +DLG + ++ +M P + G+R++ + + E L + + Sbjct: 242 TDFGAFIDLG-GVDGLLHISEMSYGRIKHPSQVVSEGERIKVKVLRLDREKGKVSLGLKQ 300 Query: 200 SKPEMLIELFRIEVPE--IGEEVI 221 P+ + + PE I E + Sbjct: 301 VLPDP-WDSVEEKYPEGAIVEGTV 323 Score = 48.3 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 53/131 (40%), Gaps = 12/131 (9%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 E++ ++ + ++ G+ ++ ++ + ++ + Q + + V +++ Sbjct: 260 SEMSYGRIKHPSQVVSEGERIKVKVLRLDREKGKVSLG---LKQVLPD-PWDSVEEKYP- 314 Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRPGDRVRGVLYSV 186 EG I+ G V ++ ++L + +I M P E GD V+ + +V Sbjct: 315 -EGAIVEGTVARLTTFGAFVELEPGVDGLIHISQMADRRINNPGEVVSIGDVVKVKVINV 373 Query: 187 RPEARGAQLFV 197 + R L + Sbjct: 374 DAQNRRISLSL 384 Score = 44.1 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 15/152 (9%) Query: 67 EVTQPTKEITLEAAR-YEDESLNLGDYVEDQIESVTF-DRITTQTAKQVIVQKVREAERA 124 E P E++ R D L +GD V+ + SV + +K+ +++ AE Sbjct: 80 EGIIPLNELSHRPLRSAHDAGLKVGDEVQVVVLSVDTKGEGGLRISKRRADEQLAWAEVE 139 Query: 125 MVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR----PGDRVR 180 + GE+I V + + + +DLG A + + G ++R Sbjct: 140 RKFEA-----GEVIEAEVTEAVKGGLVVDLG--LRAFLPASQVDRGYVADLSKFVGQKIR 192 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIE 212 + + + ++ ++R + E Sbjct: 193 VKI--IELDPYKGRVILSRKQVLEAERTAARE 222 >UniRef50_UPI0001C3232B RNA binding S1 domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3232B Length = 529 Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 8/85 (9%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVR 187 EG+++TG V ++++D + +D+G +E VI ++ P++ G+ V ++ + Sbjct: 40 EGDVVTGHVVRIDKDEVLVDIGYKSEGVIPSNELSIRKSVDPKDEVEMGEEVDALVLT-- 97 Query: 188 PEARGAQLFVTRSKPEMLIELFRIE 212 E + +L +++ + RIE Sbjct: 98 KEDQDGRLILSKKRARFEKAWRRIE 122 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 12/139 (8%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 E++ + E L++GD V ++ + DR Q + Q +E VVD + Sbjct: 243 SELSWSHVNHPSEILSIGDTVSVKVLDIDRDR---QRISLGLKQT-QEDPWQRVVDTYN- 297 Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRPGDRVRGVLYSV 186 G+ + G V KV +++ + E ++ ++ PRE +P D V+ + + Sbjct: 298 -VGDELEGRVTKVVTFGAFVEILDGVEGLVHISELAQHHVENPREIIQPNDEVKVKILEI 356 Query: 187 RPEARGAQLFVTRSKPEML 205 E R L + R + ++L Sbjct: 357 DSERRRLSLSIKRVEGQIL 375 Score = 44.5 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 54/126 (42%), Gaps = 9/126 (7%) Query: 89 LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD 148 LG +E ++ + R +++ ++++ R +R ++D+ + G I+ G + + Sbjct: 170 LGQTIECRVIELNRSRNNVVLSRRAVLEEQRREDRERILDRLQP--GMIVEGTISNIVDF 227 Query: 149 NISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 +DL + + +I ++ P E GD V + + + + L + +++ Sbjct: 228 GAFVDL-DGIDGLIHISELSWSHVNHPSEILSIGDTVSVKVLDIDRDRQRISLGLKQTQE 286 Query: 203 EMLIEL 208 + + Sbjct: 287 DPWQRV 292 >UniRef50_D1N749 Ribosomal protein S1 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N749_9BACT Length = 607 Score = 59.1 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 31/82 (37%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGA 193 +G+I+ G + D +D+G AE + + L + GD++ L + Sbjct: 64 KGKIVEGKIVAKRPDGALVDIGYKAEGFVPASEFLKFDEANIGDKIDVYLEEIENRNNMP 123 Query: 194 QLFVTRSKPEMLIELFRIEVPE 215 ++ + ++ E E Sbjct: 124 EISLEKAYSIKAWNRITTEYGE 145 Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 54/135 (40%), Gaps = 9/135 (6%) Query: 77 LEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGE 136 L+ + +G + +I + DR +++ ++++ + +R+ ++ + E Sbjct: 177 LDVGPVHNMDDYIGKEFDVKIIKINLDRRNIVVSRRELLEETLKDQRSKLLGEM--KVDE 234 Query: 137 IITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEA 190 + GVVK + +DLG + ++ D+ P E + G+ + V+ + E Sbjct: 235 LRKGVVKNITDFGAFIDLG-GVDGLLHITDISWGRISHPSEVLKVGEEIEVVIIGIDKEK 293 Query: 191 RGAQLFVTRSKPEML 205 L + + Sbjct: 294 ERVSLGLKQKTRNPW 308 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 13/146 (8%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 +I+ + E L +G+ +E I + + + QK R VV ++ Sbjct: 262 TDISWGRISHPSEVLKVGEEIEVVIIGID---KEKERVSLGLKQKTRN-PWDDVVSKYP- 316 Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYS 185 +G I G V + +++ E +I +M + G+ V V+ Sbjct: 317 -KGSKINGKVVNIMPYGAFVEIETGVEGLIHVSEMSWTKRVSKASDVLSIGEEVEAVVLD 375 Query: 186 VRPEARGAQLFVTRSKPEMLIELFRI 211 + ++R L + + + L Sbjct: 376 IDRDSRKISLGLRQKERNPWEVLAEK 401 Score = 44.1 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 14/150 (9%) Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARYEDESL-NLGDYVEDQIESVTFDRITTQTAKQVI 114 + F E E++ + + ++G+ VE + + D ++ + Sbjct: 331 YGAFVEIETGVEGLIHVSEMSWTKRVSKASDVLSIGEEVEAVVLDIDRD---SRKISLGL 387 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------ 168 QK R ++ +++ G ITG V+ + +++ N+ + +I DM Sbjct: 388 RQKERN-PWEVLAEKYP--VGRRITGKVRNMTSYGAFVEIENDIDGMIHVSDMSWTRKIN 444 Query: 169 -PRENFRPGDRVRGVLYSVRPEARGAQLFV 197 P E +PG V ++ + PE + L + Sbjct: 445 NPNEVLKPGQEVEAIILDINPEQQRISLGL 474 Score = 41.0 bits (95), Expect = 0.093, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 59/169 (34%), Gaps = 20/169 (11%) Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 VD + + DE N+GD ++ +E + +R ++ Sbjct: 82 VDIGYKAEGFVPASEFLKFDE-ANIGDKIDVYLEEIE-NRNNMPEISLEKAYSIK--AWN 137 Query: 125 MVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR----PGDRVR 180 + ++ EG ++ G ++ + I +D+ A + + G Sbjct: 138 RITTEYG--EGHVVKGFMRHRVKGGIMVDV-EGFPAFLPGSQLDVGPVHNMDDYIGKEFD 194 Query: 181 GVLYSVRPEARGAQLFVTR------SKPEMLIELF-RIEVPEIGEEVIE 222 + + + R + V+R + + +L ++V E+ + V++ Sbjct: 195 VKIIKINLDRRN--IVVSRRELLEETLKDQRSKLLGEMKVDELRKGVVK 241 >UniRef50_B8J034 RNA binding S1 domain protein n=2 Tax=Desulfovibrio RepID=B8J034_DESDA Length = 489 Score = 58.3 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 14/217 (6%) Query: 18 LPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITL 77 + R + + A +K V +I R + F F E E++ Sbjct: 178 VSRRALLDRERQEQLEALLEKLGVGDTVEGKISRFA-PFGAFMELDTAVEGMIHLSELSW 236 Query: 78 EAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE-RAMVVDQFREHEGE 136 DE+++LGD V ++ + + + + +K E + V + G Sbjct: 237 SRVGAPDEAVSLGDTVRAKVL--SISKSDKGQVRIALSRKQAEGDPWQDVTQRLEN--GA 292 Query: 137 IITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYSVRPE 189 ++ G V ++ +++ E ++ ++ P E + GD V + + + Sbjct: 293 VVQGKVVRLAPFGAFVEILPGIEGLVHISELSWTKRVNKPEEILQVGDIVAVKIKEINAD 352 Query: 190 ARGAQLFVTRSKPEMLIELFRIEVP-EIGEEVIEIKA 225 +R L + ++ + + + P I + ++E ++ Sbjct: 353 SRRISLSLRDAEGDPWQDAAQQFAPGSIVQGIVEGRS 389 Score = 58.3 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 17/143 (11%) Query: 71 PTKEITLEAARYEDESLNLGDYVEDQ-IESVTFDRITTQTAKQVIVQKVREAERAMVVDQ 129 P +I L +A ED G ++ I R + + ++ + ER ++ Sbjct: 142 PGSQIGLASA--EDAETLTGRTLQFLVIRVENRGRNIVVSRRALL-----DRERQEQLEA 194 Query: 130 FREH--EGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRG 181 E G+ + G + + ++L E +I ++ P E GD VR Sbjct: 195 LLEKLGVGDTVEGKISRFAPFGAFMELDTAVEGMIHLSELSWSRVGAPDEAVSLGDTVRA 254 Query: 182 VLYSVRPEARG-AQLFVTRSKPE 203 + S+ +G ++ ++R + E Sbjct: 255 KVLSISKSDKGQVRIALSRKQAE 277 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 7/83 (8%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML---PRENFRPGDRVRGVLYSVRPE 189 G+ +TG V + D++ +D+G + ++ R+D+L +E PG+ V + V + Sbjct: 33 QAGQKVTGTVIAITGDSVFVDVGIKVDGIMERKDILDADGKETTAPGEPVEAWVIGVSAQ 92 Query: 190 ARGAQLFVTRSKPEMLIELFRIE 212 ++ ++RS + Sbjct: 93 ----EIRLSRSMSGSGVAALEEA 111 >UniRef50_Q027A8 SSU ribosomal protein S1P n=2 Tax=Acidobacteria RepID=Q027A8_SOLUE Length = 572 Score = 58.3 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 19/133 (14%) Query: 75 ITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE---RAMVVDQFR 131 I+ + LN+GD VE +I V AK+ I +++ + +V D++ Sbjct: 245 ISWGRVNKPADVLNVGDKVEAKILKVD-------PAKKRISLGLKQLQPHPWDLVADKY- 296 Query: 132 EHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLY 184 GE +TG V +V ++L E ++ +M P + +PGD+V V+ Sbjct: 297 -KVGERVTGSVTRVTDFGAFVELEKGIEGLVHLSEMSWSKKIRRPADMVKPGDQVEVVVL 355 Query: 185 SVRPEARGAQLFV 197 V R L + Sbjct: 356 GVNAADRRISLGL 368 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 9/115 (7%) Query: 89 LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD 148 +G + +I + ++ ++++ A + Q EGEI+ G ++ + Sbjct: 170 VGQEIRCRIIKLDVADEDLVVDRRAVLEEEERASKEQRYSQ--VKEGEIVHGTIRSLTDY 227 Query: 149 NISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFV 197 +D+G +A++ D+ P + GD+V + V P + L + Sbjct: 228 GAFVDIG-GVDALLHVADISWGRVNKPADVLNVGDKVEAKILKVDPAKKRISLGL 281 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 20/191 (10%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEA-ARYEDESLNLGDYVEDQIESVTF-DRITTQTAKQ 112 DF F E E++ R + + GD VE + V DR + KQ Sbjct: 311 DFGAFVELEKGIEGLVHLSEMSWSKKIRRPADMVKPGDQVEVVVLGVNAADRRISLGLKQ 370 Query: 113 VIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML---- 168 + +A + + G +I G V + + + + E ++ D+ Sbjct: 371 ALGDPWADAAQKLA-------VGTVIEGPVTSIQKFGAFVQVAEGVEGMVHVGDISAEKR 423 Query: 169 ---PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKA 225 P++ + G V+ + + E R +L +++ + E E + Sbjct: 424 INHPQDVVKVGQVVKAQVLELDVEKRRLRL----GMKQLIPTSLDEYIAEHKEGDVVTGR 479 Query: 226 AARDPGSRAKI 236 RAK+ Sbjct: 480 MTDVSSGRAKV 490 >UniRef50_C8WX93 RNA binding S1 domain protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WX93_ALIAD Length = 385 Score = 58.3 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 9/123 (7%) Query: 90 GDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDN 149 G + ++ V + +++ ++++ EA + ++ + G++I G V+++ Sbjct: 147 GQKLRAKVIEVDPQKNKLILSRRAVLEEESEARARKLFEELKP--GDVIEGTVQRLTDFG 204 Query: 150 ISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPE 203 +D+G A+ ++ ++ P E R GDRV+ + V PEA L + + PE Sbjct: 205 AFVDVG-GADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAALPE 263 Query: 204 MLI 206 Sbjct: 264 PWE 266 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 7/114 (6%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSV 186 EG+++TG V V+ +++ L + E I +++ P + G V + V Sbjct: 15 REGDVVTGEVTAVDDHGVTVALPHGYEGHISPQELSAVPGTHPSDVVSVGSTVTAQVLKV 74 Query: 187 RPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240 E+ L R++ E + + +EI+ + G A + V+ Sbjct: 75 DMESGHVTLSKRRAEQASAWERMQQLLESGEPIEVEIRDVVK-GGLVADVGVRA 127 >UniRef50_C1DT56 Ribosomal protein S01 n=3 Tax=Sulfurihydrogenibium RepID=C1DT56_SULAA Length = 573 Score = 58.0 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 66/148 (44%), Gaps = 17/148 (11%) Query: 71 PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 P EI+ + +R +E L +GD VE + + K ++ K+ E D+F Sbjct: 213 PKSEISWDKSRKVEEVLKVGDEVEVVV-------KEIKDKKPILSLKLLEGNP---WDKF 262 Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLP------RENFRPGDRVRGVLY 184 ++ G+++ +K +N+ + +DLG E I ++ ++N + GD V ++ Sbjct: 263 DKNIGDVVEVKIKDINKGGLVVDLG-LLEGFIPNSEISHFDYVKAKKNLKVGDTVVAKIF 321 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIE 212 + E +L + +++ L + + Sbjct: 322 EIDKEKGKVKLSIKQAQENPLEKFLKEN 349 Score = 45.6 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 32/83 (38%), Gaps = 10/83 (12%) Query: 124 AMVVDQF--REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRP 175 + F + G+++ G VKK+ +D+ + E I ++ +P + Sbjct: 423 DDAFNDFVSKHKVGDVVKGKVKKLIEKGAFVDITDEIEGFIPVSEISKERIKIPSDKLSL 482 Query: 176 GDRVRGVLYSVRPEARGAQLFVT 198 V + + + + ++ ++ Sbjct: 483 HQEVEAKIIKIDTQNK--KITLS 503 >UniRef50_D1Y3S9 30S ribosomal protein S1 n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3S9_9BACT Length = 518 Score = 57.6 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 7/103 (6%) Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDMLP------RENFRPGDRVRGVLYSVRP 188 G++I G V + +D+G E + + + GD++ + S + Sbjct: 33 GKVIEGTVVEKTDGGWLVDVGYKCEGFLPEREWTHHILVDDKPAPEIGDKIEVQVTS-KR 91 Query: 189 EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 + AQL V+R + E +E ++I +K + G Sbjct: 92 DGEEAQLLVSRWRCEFDRRWAELESKVKANDIITVKGIRKVKG 134 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 20/175 (11%) Query: 32 ATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVT--QPTKEITLEAARYEDESLNL 89 +A ++K+ E++V +D TF ++ V + E++ + + E+ Sbjct: 195 LSAKREKFYSEVNVGDVLDGTVSSVTTFGLFVNVGPLDGLVHVSEVSWQRSSKSRETYKK 254 Query: 90 GDYVEDQIESVTFDRITTQTAKQVIVQKVREAE---RAMVVDQFREHEGEIITGVVKKVN 146 GD V+ ++ I I +R+A+ V++++ + + GVV V Sbjct: 255 GDAVKVKV-------IGIDKENNKISLSIRQAQGNPWDTVMERW--QKDQQTKGVVTNVT 305 Query: 147 RDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQL 195 +++ E +I D+ PRE G V ++ + PE + L Sbjct: 306 DFGAFVEVEPGIEGLIHIGDLSWSRIKHPREVLHKGQEVETIVLEIDPEKKRMSL 360 Score = 45.6 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 54/140 (38%), Gaps = 9/140 (6%) Query: 78 EAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEI 137 E R + G+ + ++ + + +++ ++ + A+R + G++ Sbjct: 154 EEGRGVNPGRFEGEEFQVRLLEMDKRKRRLVLSRRSLLDEDLSAKREKFYSEVN--VGDV 211 Query: 138 ITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEAR 191 + G V V + +++G + ++ ++ RE ++ GD V+ + + E Sbjct: 212 LDGTVSSVTTFGLFVNVGP-LDGLVHVSEVSWQRSSKSRETYKKGDAVKVKVIGIDKENN 270 Query: 192 GAQLFVTRSKPEMLIELFRI 211 L + +++ + Sbjct: 271 KISLSIRQAQGNPWDTVMER 290 Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 13/150 (8%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 DF F E +++ ++ E L+ G VE + + ++ + + Sbjct: 306 DFGAFVEVEPGIEGLIHIGDLSWSRIKHPREVLHKGQEVETIVLEIDPEKKRMSLGYKQL 365 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------ 168 + E +G+ IT V ++ +++ E +I + Sbjct: 366 HDPWKGIEERYT-------KGQDITVKVVRLADFGAFVEIEKGVEGLIHISQLSTHRVEK 418 Query: 169 PRENFRPGDRVRGVLYSVRPEARGAQLFVT 198 P + + G V + V P R +L ++ Sbjct: 419 PGDVLQEGQEVTARVLEVNPAERRIRLSIS 448 >UniRef50_C4XQS6 30S ribosomal protein S1 n=3 Tax=Desulfovibrio RepID=C4XQS6_DESMR Length = 576 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 6/119 (5%) Query: 120 EAERAMVVDQFREHE-GEIITGVVKKVNRDNISLDLGNNAEAVILREDML--PRE-NFRP 175 +A + + F + E G I GVV ++ ++++ +D+ +E I + + E + Sbjct: 21 DALENYLNEDFGDLEEGSITPGVVVRIGKEHVLVDVNFKSEGQIPVSEFMDALGELEVKV 80 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 GD++ + V + ++R + + + ++E + ++VI K R G Sbjct: 81 GDQIDVYV--VSKNESEGTIIMSRERAKRMQLFDKLEEIQEKDDVISGKIVRRIKGGYT 137 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 67/159 (42%), Gaps = 16/159 (10%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 +++ + ++ E ++LGD +E ++ S D+ Q + Q + + + ++ Sbjct: 237 TDMSWKRIKHPKELVHLGDELELKVLSFDQDK---QKVSLGMKQLIAD-PWENIAGKYP- 291 Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYS 185 E ++G V + ++L E ++ +M P + GD V V+ S Sbjct: 292 -EDTRMSGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLS 350 Query: 186 VRPEARGAQLFVTRSKPEMLIELFRIEVPE--IGEEVIE 222 V P+ + L + + +P ++ + PE I E ++ Sbjct: 351 VDPDKKRISLGMKQVRPNP-WDIVAEKYPEGTILEGSVK 388 Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 13/150 (8%) Query: 55 DFDTFRRWLVVDEVTQPTKEITL-EAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV 113 +F F + +I+ + R+ E GD V ++ +V + Sbjct: 392 EFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVD---KENEKFTLG 448 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML----- 168 I Q + E V D + G ++ G V + + +++ E ++ ++ Sbjct: 449 IKQ-LSEDPWTRVPDTYP--VGAMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRKKVK 505 Query: 169 -PRENFRPGDRVRGVLYSVRPEARGAQLFV 197 P E ++ GD + + V + R L + Sbjct: 506 TPAEIYKEGDEIEAKVIHVSADERRLGLSI 535 Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 14/144 (9%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEAARYE-DESLNLGDYVEDQIESVTFDRITTQTAKQV 113 D+ F E E++ + +++GD VE + SV D+ Sbjct: 305 DYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLG--- 361 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML----- 168 +++VR +V +++ EG I+ G VK + I + + + + +I D+ Sbjct: 362 -MKQVRPNPWDIVAEKYP--EGTILEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKV 418 Query: 169 --PRENFRPGDRVRGVLYSVRPEA 190 P E F+ GD V + +V E Sbjct: 419 RHPGEMFKSGDIVMAKVLTVDKEN 442 Score = 48.3 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 67/187 (35%), Gaps = 33/187 (17%) Query: 27 LESALATATKKKYEQEIDVRVQIDRKSGDF------DTFRRWLVVDEVTQPTKEITLEAA 80 E AL + + D + G + ++VD + +I + Sbjct: 19 FEDALENYLNEDFG---------DLEEGSITPGVVVRIGKEHVLVDVNFKSEGQIPVSEF 69 Query: 81 RY--EDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE--HEGE 136 + + +GD ++ + S T +++ A+R + D+ E + + Sbjct: 70 MDALGELEVKVGDQIDVYVVSKNESEGTIIMSRER-------AKRMQLFDKLEEIQEKDD 122 Query: 137 IITGVVKKVNRDNISLDLGNNAEAVILREDM----LPRENFRPGDRVRGVLYSVRPEARG 192 +I+G + + + ++DLG EA + + +P + G + + R Sbjct: 123 VISGKIVRRIKGGYTVDLG-GVEAFLPGSHVDLRPVPDMDALVGQEFEFRVLKINR--RR 179 Query: 193 AQLFVTR 199 + + V+R Sbjct: 180 SNVIVSR 186 >UniRef50_B8FI70 Ribosomal protein S1 n=14 Tax=Proteobacteria RepID=B8FI70_DESAA Length = 616 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 7/111 (6%) Query: 126 VVDQFREH--EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRE---NFRPGDRVR 180 + ++ + EGE++TG + ++++D + +D+G +E +I + + + GD V Sbjct: 60 LYEESFKRFEEGEVVTGKIIQIDKDYVLVDIGYKSEGLIPIREFIEPDGTVAAEIGDEVE 119 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPG 231 ++ + E G + V++ K + I+V E ++E R G Sbjct: 120 VMVERLDSEDEG--VMVSKEKASKIKVWEEIKVAYEEEGIVEGTITHRVKG 168 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 13/130 (10%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 +I+ ++ E +G + ++ + +R +++++E D++ Sbjct: 270 TDISWGRVKHPSELFGVGQTITVKVLDLDLERERVSLG----MKQLKEDPWTTASDRYP- 324 Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYS 185 GE ++G V + ++L E +I +M P + GD + V+ Sbjct: 325 -VGERVSGKVVSLTDYGAFVELEEGIEGLIHVSEMSWTRKIRHPSKVVSVGDDLEAVVLD 383 Query: 186 VRPEARGAQL 195 ++P R L Sbjct: 384 IKPSNRRVSL 393 Score = 41.8 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 18/122 (14%) Query: 87 LNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE---RAMVVDQFREHEGEIITGVVK 143 GD V + + + + +++ E + +++ G + G++ Sbjct: 458 YKKGDEVRAIVLHIDRE-------NERFSLGIKQLEPDPWETISERY--QVGTKVNGLIT 508 Query: 144 KVNRDNISLDLGNNAEAVILREDMLPREN------FRPGDRVRGVLYSVRPEARGAQLFV 197 V I ++L E ++ ++ + F GD V V+ ++ P+ R L + Sbjct: 509 SVTDFGIFVELEEGIEGLVHVSEVAKEKVKTPVGQFNVGDTVETVVVNINPKERRIGLSI 568 Query: 198 TR 199 R Sbjct: 569 KR 570 Score = 41.4 bits (96), Expect = 0.076, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 63/166 (37%), Gaps = 16/166 (9%) Query: 55 DFDTFRRWLVVDEVTQPTKEITL-EAARYEDESLNLGDYVE-DQIESVTFDRITTQTAKQ 112 D+ F E E++ R+ + +++GD +E ++ +R + KQ Sbjct: 338 DYGAFVELEEGIEGLIHVSEMSWTRKIRHPSKVVSVGDDLEAVVLDIKPSNRRVSLGMKQ 397 Query: 113 VIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML---- 168 V ++ +++ G I G +K + + + + + ++ D+ Sbjct: 398 VAPNP-----WDVIGEKYP--IGTTIEGRIKNITDFGMFIGIDEGIDGLVHISDISWTKR 450 Query: 169 ---PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRI 211 P + ++ GD VR ++ + E L + + +P+ + Sbjct: 451 INHPGDVYKKGDEVRAIVLHIDRENERFSLGIKQLEPDPWETISER 496 >UniRef50_B8JIP9 Programmed cell death 11 n=5 Tax=Clupeocephala RepID=B8JIP9_DANRE Length = 1816 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 13/88 (14%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRPGDRVRGVLYSV 186 G+I+ G V + + + + +G + +I R + P + F PG +V+ + V Sbjct: 443 KVGQIVEGTVTDLQKHGVYVRIGEHIRGMIPRIHLADVTLKNPEKKFYPGLKVKCRVLLV 502 Query: 187 RPEARGAQLFVTRSKPEMLIELFRIEVP 214 + + L +TR L +P Sbjct: 503 EAQKK--LLILTRK-----KALVESTLP 523 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 50/137 (36%), Gaps = 7/137 (5%) Query: 72 TKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFR 131 + LE + LG + + S+ + + K I K + ++ Sbjct: 126 DTDDGLEEVVPLSKLFTLGMLIRCVVSSLDSAKEGHISLKLSINPK----DVNKALNSVA 181 Query: 132 EHEGEIITGVVKKVNRDNISLDLG-NNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEA 190 ++G V+ V +D+G +A + ++ +++ G V ++ V+ Sbjct: 182 LKPAMTLSGCVESVEDHGYLVDIGIGGTKAFLPKKSTSSKQDLYVGQYVLVLIEDVKDSG 241 Query: 191 RGAQLFVTRSKPEMLIE 207 R + ++++ ++ Sbjct: 242 R--VVRLSQNPQALVKA 256 >UniRef50_A5V0B5 RNA binding S1 domain protein n=3 Tax=Chloroflexaceae RepID=A5V0B5_ROSS1 Length = 514 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 15/148 (10%) Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 F F V + E+ ++ + +G ++ V A I Sbjct: 254 FGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVD-------AAGARIS 306 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR----- 170 +R A+R + Q +G+I+ G + + +D+G + ++ ++ Sbjct: 307 LSLRRAQRGQKLQQLE--KGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNTHVARV 364 Query: 171 -ENFRPGDRVRGVLYSVRPEARGAQLFV 197 + + GDRV+ + V P+++ L + Sbjct: 365 EDVVKVGDRVQVRVLDVDPQSKRISLSL 392 Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 68/183 (37%), Gaps = 23/183 (12%) Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTF-DRITTQTAKQVI 114 + F V + E++ + + +GD V+ +++SV R + T + Sbjct: 155 YGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRRISLTMRT-- 212 Query: 115 VQKVREAER---------AMVVDQFRE-HEGEIITGVVKKVNRDNISLDLGNNAEAVILR 164 K R AE + ++ G+ + G V + + +D+G + ++ Sbjct: 213 --KERSAEPRSGRGKKKPEVDYEKLAALRVGDNVEGTVTGMAPFGVFVDIGVGKDGLVHV 270 Query: 165 EDMLPR------ENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE 218 ++ + + G + V GA++ ++ + + +L ++E +I E Sbjct: 271 SELAEGRVEKAEDVVQVGQTYTFKVLEVDAA--GARISLSLRRAQRGQKLQQLEKGQILE 328 Query: 219 EVI 221 I Sbjct: 329 GTI 331 >UniRef50_Q1MQB8 Ribosomal protein S1 n=2 Tax=Desulfovibrionaceae RepID=Q1MQB8_LAWIP Length = 574 Score = 56.8 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRE---NFRPGDRVRGVLYSVRPEA 190 EG I+ G + +++ DN+ +D+ +E I + + + GD++ + VR Sbjct: 35 EGTIVKGEIVRIDDDNVLVDVNFKSEGQIPTIEFQNTDGNITAKVGDKIDVFV--VRKNE 92 Query: 191 RGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 + + ++ K + + ++E + +I+ + R G Sbjct: 93 QEGTIILSFEKAKRMQLFDQLEDLQEKNGIIKGRIVRRIKGGYT 136 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 80/220 (36%), Gaps = 30/220 (13%) Query: 12 VSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQP 71 + E+ R+ + + + K K E V V + G Sbjct: 189 LEEERDSKRQDLLQTISEGQVVVGKVKNVTEYGVFVDLGGLDGLLHI------------- 235 Query: 72 TKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFR 131 +++ + R+ E +NLG +E ++ S Q + Q V + + ++F Sbjct: 236 -TDMSWKRIRHPREMVNLGQELELKVLSFD---KENQKVSLGLKQLVPD-PWQDITERFP 290 Query: 132 EHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLY 184 E + G V + + ++L + E ++ +M P + GD V V+ Sbjct: 291 ETSHHV--GKVTNLVDYGVFVELESGVEGLVHISEMSWTRKLRHPSQMVHQGDEVEVVIL 348 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVPE--IGEEVIE 222 + + + L + + KP EL + PE I E V++ Sbjct: 349 GIDQDKKRISLGMKQVKPNP-WELVGEKYPEGTILEGVVK 387 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 14/144 (9%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEAARYE-DESLNLGDYVEDQIESVTFDRITTQTAKQV 113 D+ F E E++ + ++ GD VE I + D+ Sbjct: 304 DYGVFVELESGVEGLVHISEMSWTRKLRHPSQMVHQGDEVEVVILGIDQDKKRISLG--- 360 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML----- 168 +++V+ +V +++ EG I+ GVVK + + + + + + +I D+ Sbjct: 361 -MKQVKPNPWELVGEKYP--EGTILEGVVKNITEFGMFIGIEDGIDGLIHVSDISWTKKV 417 Query: 169 --PRENFRPGDRVRGVLYSVRPEA 190 P E F+ GD V+ + +V E Sbjct: 418 RHPNELFKVGDTVQAKVLTVDQEN 441 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 58/150 (38%), Gaps = 13/150 (8%) Query: 55 DFDTFRRWLVVDEVTQPTKEITL-EAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV 113 +F F + +I+ + R+ +E +GD V+ ++ +V + Sbjct: 391 EFGMFIGIEDGIDGLIHVSDISWTKKVRHPNELFKVGDTVQAKVLTVD---QENEKFTLG 447 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------ 167 I Q + E + + G I+ G++ + + +++ E ++ ++ Sbjct: 448 IKQ-LTEDPWSNAPSVYP--VGGIVKGIITNITDFGLFVEVEEGIEGLVHVSELSSKKIK 504 Query: 168 LPRENFRPGDRVRGVLYSVRPEARGAQLFV 197 P E ++ G+ ++ + V E R L + Sbjct: 505 SPSEIYKDGEEIQAKIIHVSAEERRLGLSI 534 Score = 45.2 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 60/138 (43%), Gaps = 10/138 (7%) Query: 84 DESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVK 143 D + + E ++ + R +++V++++ R+++R ++ EG+++ G VK Sbjct: 158 DMDMLVNQEYEFRVLKINRRRSNVIVSRRVLLEEERDSKRQDLLQTIS--EGQVVVGKVK 215 Query: 144 KVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFV 197 V + +DLG + ++ DM PRE G + + S E + L + Sbjct: 216 NVTEYGVFVDLG-GLDGLLHITDMSWKRIRHPREMVNLGQELELKVLSFDKENQKVSLGL 274 Query: 198 TRSKPEMLIELFRIEVPE 215 + P+ ++ PE Sbjct: 275 KQLVPDPWQDITER-FPE 291 >UniRef50_B5IRN8 DHH family n=4 Tax=Thermococcaceae RepID=B5IRN8_9EURY Length = 742 Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 10/101 (9%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGA 193 G I GV+ +V R + + L + +I R+D+L + ++PG + + VRPE R Sbjct: 132 IGRIYKGVIDRVERFGVFVKLNPHVVGLIKRKDLLGGKEYKPGMEILVQVLDVRPEKREI 191 Query: 194 QLFVTRSKPEMLIELFRIEVP---------EIGEEVIEIKA 225 + + + + R E+P E+ + + I+ Sbjct: 192 DFIES-ALRQYKEVIVRKELPVTPIEQLSEELAGKTVRIRG 231 >UniRef50_D1ZWZ1 Whole genome shotgun sequence assembly, contig_1889 n=1 Tax=Sordaria macrospora RepID=D1ZWZ1_SORMA Length = 150 Score = 56.4 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 3/94 (3%) Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM-LPREN--FRPGDRVR 180 + EG ++ G V + D +D+G +E + + P + + GD V Sbjct: 14 DDMFGASESFEGRVVIGTVTGIENDLAVIDVGLKSEGRVPLREFAAPGQKADLKVGDEVE 73 Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVP 214 + V A L R++ E + P Sbjct: 74 VYVDRVENANGEAMLSRDRARREAAWDKLEPNSP 107 >UniRef50_A5N6D1 30S ribosomal protein S1 n=2 Tax=Clostridium kluyveri RepID=A5N6D1_CLOK5 Length = 314 Score = 56.0 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 66/155 (42%), Gaps = 13/155 (8%) Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 F F V+ + E++ + + E +++GD ++ + ++ DR + + Sbjct: 133 FGVFVDLGGVEGLV-HISELSWKKIKDPSEVVSVGDKLKVYVLNLNQDRNRISLS----I 187 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------P 169 ++ + + +++ +I+ G+V KV +++ E ++ ++ P Sbjct: 188 KRTLNSPWENIGKKYKS--NDIVDGIVSKVINIGAFIEIEPGIEGLVHISEISQEHITTP 245 Query: 170 RENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEM 204 E R GD+V+ + ++ +A L + ++ + Sbjct: 246 EEVLRVGDKVKVKILNIDEKASRISLSIKEAQDKF 280 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 7/81 (8%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVR 187 +G+ I G V ++ + +DLG E ++ ++ P E GD+++ + ++ Sbjct: 119 KGDKIEGRVSRITNFGVFVDLG-GVEGLVHISELSWKKIKDPSEVVSVGDKLKVYVLNLN 177 Query: 188 PEARGAQLFVTRSKPEMLIEL 208 + L + R+ + Sbjct: 178 QDRNRISLSIKRTLNSPWENI 198 >UniRef50_D2L2R4 RNA binding S1 domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L2R4_9DELT Length = 507 Score = 56.0 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 10/132 (7%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 E++ A +++++LG V ++ S D+ I Q + V ++F Sbjct: 233 SELSWSRAEKAEDAVDLGQAVTVKVLSFDRDKKGRPRISLSIKQAGPD-PWDTVGEKFAA 291 Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYS 185 G+ + G V ++ +++ E +I +M P + PG+ V + Sbjct: 292 --GDRVEGKVTRLADFGAFVEIAPGIEGLIHVSEMSHVRRIAKPSDVVSPGETVTVAVKD 349 Query: 186 VRPEARGAQLFV 197 V R L + Sbjct: 350 VDLSKRRISLSL 361 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 54/137 (39%), Gaps = 15/137 (10%) Query: 71 PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 P +I L A ++ +++G I + D +++ K++E ERA +F Sbjct: 143 PVSQIDL--AFTDNPEVHVGQTYTFLITTFERDGKNIVVSRR----KLQEQERAESELRF 196 Query: 131 REHE--GEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGV 182 E G++I VV + +++ E ++ ++ + G V Sbjct: 197 LESVNPGDVIPAVVTRFAAFGAFVEVAPGLEGLVHLSELSWSRAEKAEDAVDLGQAVTVK 256 Query: 183 LYSVRPEARG-AQLFVT 198 + S + +G ++ ++ Sbjct: 257 VLSFDRDKKGRPRISLS 273 Score = 42.5 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 18/115 (15%) Query: 90 GDYVEDQIESVTFDRITTQTAKQVIVQKVREAE---RAMVVDQFREHEGEIITGVVKKVN 146 G+ V ++ V K+ I ++E A V D F G + G V+ Sbjct: 340 GETVTVAVKDVDLS-------KRRISLSLKEVAGDPWAAVSDTFA--IGSTVEGTVENRQ 390 Query: 147 RDNISLDLGNNAEAVILRE------DMLPRENFRPGDRVRGVLYSVRPEARGAQL 195 + + ++L ++ + P E GD V V+ + E R L Sbjct: 391 QYGLFINLAPGVTGLLPASKLRDALEPAPYEKVSSGDTVSVVVSEIDTEKRKMTL 445 >UniRef50_C1FAB9 Ribosomal protein S1 n=2 Tax=Bacteria RepID=C1FAB9_ACIC5 Length = 637 Score = 55.6 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 16/167 (9%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEAARYE-DESLNLGDYVEDQIESVT-FDRITTQTAKQ 112 D+ +F E E+T + L GD VE + SV DR + KQ Sbjct: 372 DYGSFVELEQGIEGLVHVSEMTWSKRMKHPSKMLKPGDEVETVVLSVNPTDRRISLGMKQ 431 Query: 113 VIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML---- 168 +++ + D++ G + G V+ + +++ + + ++ ++ Sbjct: 432 -----LQDNPWETLGDKYPT--GATVEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKR 484 Query: 169 ---PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIE 212 P E + G++VR V+ V PE R L + + +P++ F Sbjct: 485 VKHPSEVLKKGEKVRAVVLGVEPENRRLSLGIKQLQPDVWETFFEQH 531 Score = 45.6 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 9/116 (7%) Query: 86 SLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKV 145 +G +E ++ + R +++ I+++ + A+R+ ++ EG I+TG VK + Sbjct: 228 DAYIGQPIEVRVIKLNKKRGNVVVSRKEILEEEQTAKRSETLEHLE--EGSILTGTVKNL 285 Query: 146 NRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQL 195 +D+G + ++ DM PR+ GD ++ + + + L Sbjct: 286 TDYGAFVDMG-GIDGLLHITDMSWGRLTHPRDLVNVGDEIQVKVLKFDRDKQRVSL 340 Score = 42.2 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 22/163 (13%) Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARYED--ESLNLGDYVEDQIESVTFDRITTQTAKQV 113 + +VVD + I L+ + + GD VE IE + + ++ Sbjct: 114 IKLTDKHVVVDVGLKSEGLIPLDQVLDHNQQPKVQPGDTVEVVIEREEAEGGFLLSYEKA 173 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRE--DMLPRE 171 + +V + ++ +TG+V + +++D+G +A + ++ P Sbjct: 174 LRLRVWDTIEKAANEK------TPVTGIVAGRVKGGLTVDIG--IKAFLPGSQLEIRPVR 225 Query: 172 NFR--PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIE 212 N G + + ++ + + V+R E+ E Sbjct: 226 NLDAYIGQPIEVRV--IKLNKKRGNVVVSR------KEILEEE 260 Score = 42.2 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 13/116 (11%) Query: 87 LNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVN 146 +N+GD ++ ++ D+ Q Q + +++ G + G V V Sbjct: 318 VNVGDEIQVKVLKFDRDK---QRVSLGFKQ-LTPDPWLDATERYP--VGARVRGRVLSVT 371 Query: 147 RDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYSVRPEARGAQL 195 ++L E ++ +M P + +PGD V V+ SV P R L Sbjct: 372 DYGSFVELEQGIEGLVHVSEMTWSKRMKHPSKMLKPGDEVETVVLSVNPTDRRISL 427 >UniRef50_B3TCT6 Putative S1 RNA binding domain protein n=2 Tax=root RepID=B3TCT6_9BACT Length = 571 Score = 55.6 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 9/110 (8%) Query: 109 TAKQVIVQKVREAERAMVVDQFREH---EGEIITGVVKKVNRDNISLDLGNNAEAVILRE 165 T KQ + +E E+ ++ + EGEI TGVV KV ++ I +DLG +E I E Sbjct: 4 TIKQYKSKSHKEFEK-LLSQDWGNRKFKEGEITTGVVSKVGKNFIFVDLGLKSEGAIPVE 62 Query: 166 DMLPR---ENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIE 212 + + G ++ +L + + + ++R K ++E Sbjct: 63 EFKLTKEIDKIEIGSKIEVLLEKIENKTGN--VVISREKARKAHSWKKME 110 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 56/133 (42%), Gaps = 11/133 (8%) Query: 71 PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 P +I L+ + D + + E ++ R +++ I++K+ +R ++ + Sbjct: 143 PGSQIDLKPLKNFDHLMKVPQTFEC-VKLDK-RRGNIVLSRRAILEKILVRDRDKIISKL 200 Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLY 184 EG+I++G +K + +DL N +A++ D+ P + G ++ + Sbjct: 201 --KEGDIVSGTIKNLTEWGAFVDL-NGVDALLHITDISWRRINKPADLLSIGQSIKAKII 257 Query: 185 SVRPEARGAQLFV 197 + + L V Sbjct: 258 KIEEGTKKISLGV 270 Score = 42.5 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 20/152 (13%) Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 VV +T I+++ + D ++ D + ES Q K I++ +E E+ Sbjct: 381 VVKNITDYGLFISVKDS-ELDGMIHYKDLNWSEKESELEKYKKNQLIKFKILEINQEKEK 439 Query: 124 AMV---------VDQFREH-EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRE-- 171 + F +++T +V + D I + GN ++++ L +E Sbjct: 440 IRLGIKQLTQDPFKFFMNKKISDVVTAIVVSSSNDGIHVYAGNKDLLLLIKRSQLAKEPE 499 Query: 172 -----NFRPGDRVRGVLYSVRPEARGAQLFVT 198 + GDRV ++ + E R ++ ++ Sbjct: 500 NQRPSRWARGDRVDCMIIELDKENR--KVVLS 529 >UniRef50_C6JH83 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C6JH83_9FIRM Length = 302 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 8/101 (7%) Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLP---- 169 + + +++ E + + EG+I+TG V V+ + +DL AE +I ED Sbjct: 1 MAESMKDYETELEASFKKIEEGDILTGTVISVDEKEVVVDLKYYAEGIIPAEDYSREPGF 60 Query: 170 --RENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIEL 208 +E GD V + VR + + ++R++ ++ Sbjct: 61 SLKEQVNVGDEVSATV--VRKDDGNGNILLSRTEAADVLAW 99 >UniRef50_D1VSI0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSI0_9FIRM Length = 725 Score = 55.3 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 7/95 (7%) Query: 124 AMVVDQFRE-HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPG 176 + + F+ +GEI+TG V V + + ++LG ++ +I +E++ P + ++ G Sbjct: 279 EAIDNSFKRIKKGEIVTGEVLYVTDNEVMVNLGYRSDGIISKEELSKNTDAKPSDLYKQG 338 Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRI 211 D + + + L R + + + Sbjct: 339 DEIEVFVLKMDDGDGNVVLSARRVEDMKVWDEIEE 373 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 56/126 (44%), Gaps = 11/126 (8%) Query: 89 LGDYVEDQI-ESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNR 147 +GD + +I + R + K V+++++ E R+ + + G++I G V+++ Sbjct: 421 VGDDFQCEIIDFDKRKRRIVLSRKNVLMRELEEK-RSQIFESLH--IGDVIEGTVQRLTN 477 Query: 148 DNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSK 201 +D+G + ++ ++ P E GD+V+ + S+ E L + ++ Sbjct: 478 FGAFVDIG-GIDGLVHISELSWNRVKHPSEVVSAGDKVKVQVLSLDEEKDRIALGLKQTT 536 Query: 202 PEMLIE 207 + + Sbjct: 537 EKPWDK 542 >UniRef50_C3XIZ7 30s ribosomal protein s1 n=6 Tax=Campylobacterales RepID=C3XIZ7_9HELI Length = 562 Score = 54.9 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 15/133 (11%) Query: 73 KEITLEAARYEDESLNLGDYVED-QIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFR 131 EI+ ++ +GD V+ +E + + + + +E + + Sbjct: 232 TEISHRGPVNPEKHYKVGDKVQVKPLEYNEEKNRLSLSIRALFDDPWKEIKDEI------ 285 Query: 132 EHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLY 184 G +I V + +DLGN+ E + +M P + + G+ + + Sbjct: 286 -KVGYVIRVTVSNIEDYGAFVDLGNDVEGFLHISEMSWDKNIKQPSDCLKVGEEINVEVI 344 Query: 185 SVRPEARGAQLFV 197 + P+ R ++ + Sbjct: 345 EIDPDNRRLRVSL 357 Score = 43.7 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 9/126 (7%) Query: 77 LEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGE 136 + ++ + +GD +E +I+ + ++ +V E+ ++ + Sbjct: 408 WDKSKKCADEFKVGDSIEVKIDKIDTANEKISLNRRYLV----ESPSEQFAKKYA--IDD 461 Query: 137 IITGVVKKVNRDNISLDL-GNNAEAVILREDM--LPRENFRPGDRVRGVLYSVRPEARGA 193 I+G V + + + + N +A+I ED+ + R++ + GD ++G L V +A Sbjct: 462 EISGQVIDIKDFGVFIKVENENIDALIRNEDLGNIARDSIKVGDTIKGALVQVDRKANRV 521 Query: 194 QLFVTR 199 +L V R Sbjct: 522 RLSVRR 527 >UniRef50_C7RHT6 Hydroxymethylbutenyl pyrophosphate reductase n=8 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RHT6_ANAPD Length = 686 Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 26/216 (12%) Query: 20 REKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEA 79 +E+ +LE +L K+ + + V+ D F + E+T E Sbjct: 279 KEEFMNSLEDSLKKIYPKEIVKGTVIDVKDDE------VFVDIQFRADGIIKLDEMTEEE 332 Query: 80 ARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHE--GEI 137 A+ S N+GD ++ + I + + R E V E E+ Sbjct: 333 AKDPKNSFNVGDEIDVFV-------IKLDDGEGNVSLSTRRVEGMKVWKDLAEKAENDEL 385 Query: 138 ITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR-----PGDRVRGVLYSVRPEARG 192 + GVV N+ +++++ + + + G+ + S+ Sbjct: 386 VHGVVSGFNKGGLTVNV-EGINGFVPAS-QIATYFVKNFKKFVGEEWDLKIISIDERKN- 442 Query: 193 AQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAAR 228 +L ++R E++ + E+ E + AR Sbjct: 443 -RLVLSRK--EVVEDELDGLWEELEEGQVVTGKVAR 475 Score = 48.3 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 68/209 (32%), Gaps = 49/209 (23%) Query: 31 LATATKKKYEQEIDVRV-QIDRKSGDFDTFRRWLVVDEVTQPTKE--------------- 74 KK +E D+++ ID + R VV++ E Sbjct: 418 FVKNFKKFVGEEWDLKIISIDERKNRL-VLSRKEVVEDELDGLWEELEEGQVVTGKVARL 476 Query: 75 --------------------ITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVI 114 I + + LN+GD +E +I + ++ ++ + Sbjct: 477 TDFGAFVEVNGLDGLLHVSDIAWSRVEHPSDVLNVGDEIEVKILKLNQEKNRISLGRKQL 536 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------ 168 ++K EA G+++TG V + +++ + E ++ ++ Sbjct: 537 LEKPFEAFVNQ------HEVGDVVTGKVVNLLDFGAFVEVADGVEGLVHVSEISWEHVEK 590 Query: 169 PRENFRPGDRVRGVLYSVRPEARGAQLFV 197 P + GD + + S+ + L + Sbjct: 591 PSDELNVGDEIEVKIISIDTDEEKVGLSI 619 Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 50/133 (37%), Gaps = 17/133 (12%) Query: 101 TFDRITTQTAKQVIVQKVREAERAMVVDQFREHE-GEIITGVVKKVNRDNISLDLGNNAE 159 I+ K +V +E + + E E G+++TG V ++ +++ N + Sbjct: 431 DLKIISIDERKNRLVLSRKEVVEDELDGLWEELEEGQVVTGKVARLTDFGAFVEV-NGLD 489 Query: 160 AVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRI-- 211 ++ D+ P + GD + + + E ++ + ++L + F Sbjct: 490 GLLHVSDIAWSRVEHPSDVLNVGDEIEVKILKLNQEKNR----ISLGRKQLLEKPFEAFV 545 Query: 212 ---EVPEIGEEVI 221 EV ++ + Sbjct: 546 NQHEVGDVVTGKV 558 >UniRef50_C0GUF0 RNA binding S1 domain protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUF0_9DELT Length = 476 Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 12/155 (7%) Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIV 115 + F E E++ + +E +++GD V + + + Sbjct: 210 YGVFVEVAPGLEGLVHISEMSWSRSLAPEEIVSVGDTVSVHLLGIEEKDKGQVRIGLSMK 269 Query: 116 QKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------- 168 Q + + + F G ++ GVV +V +++ E ++ +M Sbjct: 270 QAQAD-PWESITENFEP--GSVVEGVVTRVAPFGAFVEISPGLEGLVHVSEMSYLKRVSK 326 Query: 169 PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPE 203 P E +PG +VR + + R ++ ++ + Sbjct: 327 PEEEVQPGQKVRVKVKGIDSLER--RISLSMRDAQ 359 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 42/95 (44%), Gaps = 9/95 (9%) Query: 118 VREAERAMVVDQFRE--HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------P 169 +++ E+A + +F G+++ G V +V + +++ E ++ +M P Sbjct: 178 LKDKEQAESLHEFSRNYKPGDVLQGTVTRVEPYGVFVEVAPGLEGLVHISEMSWSRSLAP 237 Query: 170 RENFRPGDRVRGVLYSVRPEARG-AQLFVTRSKPE 203 E GD V L + + +G ++ ++ + + Sbjct: 238 EEIVSVGDTVSVHLLGIEEKDKGQVRIGLSMKQAQ 272 Score = 45.6 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 18/132 (13%) Query: 73 KEIT-LEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE---RAMVVD 128 E++ L+ +E + G V +++ + + ++ I +R+A+ V Sbjct: 316 SEMSYLKRVSKPEEEVQPGQKVRVKVKGID-------SLERRISLSMRDAQGDPWEGVST 368 Query: 129 QFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILRE--DMLPRENF---RPGDRVRGVL 183 ++ +G ++ G ++K + + L ++ R + +PGDRV + Sbjct: 369 RYE--KGTLVEGKMEKQEDFGMLVALEPGVVGLVPRSILHQNQDSSLTNKKPGDRVNVAV 426 Query: 184 YSVRPEARGAQL 195 SV R L Sbjct: 427 ESVDEANRRISL 438 >UniRef50_A7HME7 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HME7_FERNB Length = 854 Score = 54.1 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 55/136 (40%), Gaps = 11/136 (8%) Query: 103 DRITTQTAKQVIVQKVREAERAMVVDQFREH----EGEIITGVVKKVNRDNISLDLGNNA 158 R + Q+V E ++ + G+I+ G+V ++ +++DLG Sbjct: 287 GRELYMEDLNNLKQEVLEESFEQLLKEHENMNQVGRGKIVEGIVTEITPTGLTIDLGGKV 346 Query: 159 EAVILREDMLPR-ENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIG 217 V+ E++ ++ G++++ + + E A ++ KP + ++ E+ + Sbjct: 347 TGVVPLEELFKELNEYKVGEQIKVRVEKINEEDGTA--ILSAKKP--MEKIIFDEIQKAK 402 Query: 218 EE--VIEIKAAARDPG 231 E + K R G Sbjct: 403 ENGKPVSGKIIERIKG 418 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 16/165 (9%) Query: 69 TQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVD 128 P EI+ + ++L +G ++ I+ + +R + + ++ V Sbjct: 514 FIPNSEISYNTSIKAKDALTVGKIMKFLIKEINPERKRILLSLKALLPD----PWENVAK 569 Query: 129 QFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRPGDRVRGV 182 ++ G+ +TGVV V + + + E + E++ E D V+ Sbjct: 570 KY--QIGQTVTGVVTSVKPFGFFVKIEDGVEGFVPIEEVFWGRKGNINEVVSINDFVKVQ 627 Query: 183 LYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAA 227 + + PE R +L + ++ + + E I A Sbjct: 628 ILEINPEKRQMKLSYKSVIGDPWEKIAKK----LSEGDISEGKVA 668 Score = 46.0 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 14/159 (8%) Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQI-ESVTFDRITTQTAKQVI 114 F F + E P +E+ +E +++ D+V+ QI E R + K VI Sbjct: 587 FGFFVKIEDGVEGFVPIEEVFWGRKGNINEVVSINDFVKVQILEINPEKRQMKLSYKSVI 646 Query: 115 VQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------ 168 + + + EG+I G V KV + + +++ A ++ Sbjct: 647 GDPWEKIAKKL-------SEGDISEGKVAKVLPNGVIIEIEPEVTAFCNISEVSWNFVDN 699 Query: 169 PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIE 207 + + G+ V+ + + PE + ++ + ++KP Sbjct: 700 IEDVIKEGESVKFQVLKIDPENKKIRVSIRKAKPNPWKA 738 Score = 42.2 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 68/155 (43%), Gaps = 15/155 (9%) Query: 75 ITLEAARYEDESLNLGDYVEDQIE-SVTFDRITTQTAKQVIVQKVREAERAMVVDQFREH 133 + LE E +G+ ++ ++E D +AK+ + ++ D+ ++ Sbjct: 350 VPLEELFKELNEYKVGEQIKVRVEKINEEDGTAILSAKKPM--------EKIIFDEIQKA 401 Query: 134 E--GEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR-PGDRVRGVLYSVRPEA 190 + G+ ++G + + + + L N EA + + RE+ P ++++ + S Sbjct: 402 KENGKPVSGKIIERIKGGYRVILENVVEAFLPGSESNIREDEEIPREKMQFAVISYETRG 461 Query: 191 RGAQLFVTRSK--PEMLIELFRIEVP-EIGEEVIE 222 R + V+R K +++ E F P ++ E ++E Sbjct: 462 RKTNIVVSRKKLFQKLIDEFFSNRKPGDVVEGIVE 496 >UniRef50_B8G2Q3 Hydroxymethylbutenyl pyrophosphate reductase n=2 Tax=Desulfitobacterium hafniense RepID=B8G2Q3_DESHD Length = 661 Score = 53.7 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 16/122 (13%) Query: 119 REAERAMVVDQFRE-----HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML----- 168 +E M ++ + E H G ++TG V K+N D + +DLG +E VI +++ Sbjct: 277 KETHEMMNMEDWAEGMQNLHRGALVTGTVVKINHDEVFVDLGWKSEGVIALKELTVASDL 336 Query: 169 -PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP----EMLIELFRIEVPEIGEEVIEI 223 + GD++ V+ V E L R+ + L EL + EI +V ++ Sbjct: 337 QTSDIVAIGDQISAVVLRVENEEGNPVLSKRRADEMAAVDKLKELAESK-EEIQGKVADV 395 Query: 224 KA 225 Sbjct: 396 VK 397 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 74/195 (37%), Gaps = 28/195 (14%) Query: 10 EAVSNEKALPREKIFEALESA-LATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEV 68 E + E+A +E + L+ + + K+ + V I G Sbjct: 451 EILQEEQAAKKEHLLATLQEGDVVSGVVKRL-AQFGAFVDIGGVDGLLHV---------- 499 Query: 69 TQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVD 128 +I ++ E +N+GD VE QI V ++ +++++ + + Sbjct: 500 ----SDIAYTRIKHPSEYVNVGDEVEVQILKVDKEQGKISLG----LKQLKPSPWESAPE 551 Query: 129 QFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR------ENFRPGDRVRGV 182 ++ G ++TG V ++ + L + +A+I + + + + GD V+ Sbjct: 552 KYA--LGSLVTGKVVRIAPFGAFVQLEDGIDALIHISQLSEKRVNKVEDVVKVGDMVQAK 609 Query: 183 LYSVRPEARGAQLFV 197 + +PE + L + Sbjct: 610 VIECKPEEKRISLSI 624 >UniRef50_Q1IHI9 SSU ribosomal protein S1P n=6 Tax=Bacteria RepID=Q1IHI9_ACIBL Length = 609 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 73/180 (40%), Gaps = 23/180 (12%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEAARYEDES--LNLGDYVEDQIESVTFDRITTQTAKQ 112 D+ F E E+T R + S +N+GD V+ + + ++ Sbjct: 341 DYGAFIELEQGIEGLVHVSEMTWSK-RMKHPSKIVNVGDQVDAVV-------LNVNPQER 392 Query: 113 VIVQKVREAE---RAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML- 168 I +++ E + ++F G ++ G V+ + +++ + + ++ ++ Sbjct: 393 RISLGLKQLETNPWESLHEKFP--VGGVVEGKVRNLTDFGAFIEIEDGIDGLVHVSNLSW 450 Query: 169 ------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIE-VPEIGEEVI 221 P E + GD+V+ V+ ++ P+ R L V + +P++ F V +I + Sbjct: 451 TKRVKHPSEVLKKGDKVKAVVLAIEPDNRRLSLGVKQLQPDVWETFFETHRVGDIIHGKV 510 Score = 43.3 bits (101), Expect = 0.019, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 18/146 (12%) Query: 87 LNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREH-EGEIITGVVKKV 145 + +GD ++ ++ FDR KQ + ++ +D + G + G V V Sbjct: 287 VQVGDQIQVKVL--KFDRD-----KQRVSLGFKQLTPDPWLDASERYPIGARVHGRVISV 339 Query: 146 NRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYSVRPEARGAQLFVT 198 ++L E ++ +M P + GD+V V+ +V P+ R L + Sbjct: 340 TDYGAFIELEQGIEGLVHVSEMTWSKRMKHPSKIVNVGDQVDAVVLNVNPQERRISLGLK 399 Query: 199 RSKPEMLIELFRIEVPEIGEEVIEIK 224 + + L P V+E K Sbjct: 400 QLETNPWESLHEK-FP--VGGVVEGK 422 Score = 42.9 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 69/168 (41%), Gaps = 15/168 (8%) Query: 35 TKKKYEQEIDVRVQ-IDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYV 93 +K Y + ++ + IDR G ++ P ++ L R D G + Sbjct: 150 IEKAYNDKSSIKARAIDRIKGGLTV---DIMGARAFLPGSQVDLRPVRNLD--ALKGHEL 204 Query: 94 EDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLD 153 E +I + R +++ I+++ + +++ ++ E ++TG VK + +D Sbjct: 205 EVRIIKLNKKRGNIVVSRKQILEEEQNDKKSKTLEHLN--EDAVLTGTVKNLTDYGAFVD 262 Query: 154 LGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQL 195 LG + ++ DM PR+ + GD+++ + + + L Sbjct: 263 LG-GIDGLLHITDMSWGRLTHPRDLVQVGDQIQVKVLKFDRDKQRVSL 309 >UniRef50_B0SDD9 30S Ribosomal protein S1 n=6 Tax=Leptospira RepID=B0SDD9_LEPBA Length = 385 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 55/146 (37%), Gaps = 15/146 (10%) Query: 71 PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 P E T + +G+ + +I ++ + I V++ + Sbjct: 217 PQSEATYKKNPDLTTEFRVGETLRAKILTLDWS-------TNKISLSVKDFLSDPWSGKL 269 Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILRED-----MLP-RENFRPGDRVRGVLY 184 E +I++G V+ + + + LG + ++ ++ P F+PG ++ + Sbjct: 270 PFKESDIVSGTVESIKPFGLFVRLGEDFSGLVPNKESGVPQRTPLNTVFQPGQKLEVFVL 329 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFR 210 + PE R Q+ ++ +K + Sbjct: 330 EINPEKR--QIALSITKAAEAKDRME 353 Score = 43.3 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 64/143 (44%), Gaps = 17/143 (11%) Query: 90 GDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDN 149 G ++ I + + +++ I K RE ++ ++ D+ G ++ VK +++ Sbjct: 147 GKRIKFIISELGKKQNKILLSQKKIADKERETKKQLLRDEL--KVGMFVSCNVKSIHKFG 204 Query: 150 ISLDLGNNAEAVILREDMLPREN------FRPGDRVRGVLYSVRPEARGAQLFVTRSKPE 203 + +D+ + +A++ + + ++N FR G+ +R + ++ ++ S + Sbjct: 205 LIVDM-DGLDALVPQSEATYKKNPDLTTEFRVGETLRAKILTLDWSTNK----ISLSVKD 259 Query: 204 MLIELFRIEVP----EIGEEVIE 222 L + + ++P +I +E Sbjct: 260 FLSDPWSGKLPFKESDIVSGTVE 282 >UniRef50_B7IE33 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Thermosipho africanus TCF52B RepID=B7IE33_THEAB Length = 811 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 43/108 (39%), Gaps = 9/108 (8%) Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR------ENFRP 175 ++ ++ EG+II G+VKK+ + + + + ++ ++ + Sbjct: 442 QKEKFFNE--RKEGDIIEGIVKKIEKFGAFVRIFEGIDGLLPNSEVSYDTSLKVEDVLSE 499 Query: 176 GDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRI-EVPEIGEEVIE 222 G V+ + + E R L + P+ + + +V +I ++ Sbjct: 500 GQSVKLYIKKIDKENRKILLSLKELMPDPWQNVTKKYKVGDIVSGKVK 547 Score = 51.4 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 47/133 (35%), Gaps = 14/133 (10%) Query: 82 YEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK-VREAERAMVVDQFREHEGEIITG 140 + +++GD V+ I+ + K + K V + +++ G ITG Sbjct: 578 KISDIVSVGDIVKVMIKEID-----PNNKKMRLSYKEVEGDPWENIEEKYP--VGNTITG 630 Query: 141 VVKKVNRDNISLDLGNNAEAVILREDMLPR------ENFRPGDRVRGVLYSVRPEARGAQ 194 V + + +++ ++ + G +V+ V+ + E R + Sbjct: 631 TVSFILDKGVIVEIERGISGFCPISEISWNYISSVKDVLNEGQKVKAVITELDKENRKMR 690 Query: 195 LFVTRSKPEMLIE 207 L + R + + Sbjct: 691 LSIKRVQENPWKK 703 Score = 44.9 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 54/132 (40%), Gaps = 14/132 (10%) Query: 71 PTKEITLEAARYEDESLNLGDYVEDQIE-SVTFDRITTQTAKQVIVQKVREAERAMVVDQ 129 P E++ + + ++ L+ G V+ I+ +R + K+++ + + Sbjct: 481 PNSEVSYDTSLKVEDVLSEGQSVKLYIKKIDKENRKILLSLKELMPDPWQNVTKKY---- 536 Query: 130 FREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVL 183 G+I++G VK + ++L + ++ +D+ + GD V+ ++ Sbjct: 537 ---KVGDIVSGKVKNILSYGFYVNLEPGVDGLVHIDDIFWGRRGKISDIVSVGDIVKVMI 593 Query: 184 YSVRPEARGAQL 195 + P + +L Sbjct: 594 KEIDPNNKKMRL 605 >UniRef50_D0LJ72 Ribosomal protein S1 n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJ72_HALO1 Length = 608 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 11/150 (7%) Query: 71 PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 P ++ L R D +G + ++ R +++V+++K R A + ++ Sbjct: 143 PGSQVDLRPVRNLD--AFIGQSYKFKVIKFNKKRGNIVLSRRVLLEKERAALKESTLE-- 198 Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLY 184 R EG+ + G+VK + +DLG + ++ DM P E F+ GD VR + Sbjct: 199 RLKEGQEVEGIVKNLTEYGAFIDLG-GIDGLLHITDMSWGRVNHPSELFQVGDHVRVKVL 257 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIEVP 214 + L + + + + +P Sbjct: 258 KFNADTERVSLGLKQISEDPWSKAQEKYIP 287 Score = 47.6 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 10/155 (6%) Query: 55 DFDTFRRWLVVDEVTQPTKEITLEA-ARYEDESLNLGDYVEDQIESVTFDRITTQTAKQV 113 DF F + +++ ++ E GD VE + ++ Sbjct: 387 DFGIFVEIEEGIDGLVHVSDMSWTQRVKHPSEMFQKGDEVEAVLLNIDTADGEKPKISLG 446 Query: 114 IVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML----- 168 I Q + + F G+I+ V KV +++ E ++ ++ Sbjct: 447 IKQ-LNTDPWDRIPFDFPP--GKIVDAKVLKVLDFGAFVEIEKGIEGLVHVSEISDEHVD 503 Query: 169 -PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 PR+ PG ++ + SV P+ R L V + Sbjct: 504 DPRKVLTPGQELKVQILSVDPQERKIGLSVKSANR 538 Score = 45.2 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 11/96 (11%) Query: 112 QVIVQKVREAERAMVVDQFREHE--GEIITGVVKKVNRDNISLDLGNNAEAVILREDML- 168 I +++ E +Q E G ++ G V+ + I +++ + ++ DM Sbjct: 351 NRISLGMKQLEPNP-YEQLNEKYPPGTVVKGKVRNIADFGIFVEIEEGIDGLVHVSDMSW 409 Query: 169 ------PRENFRPGDRVRGVLYSVRPEAR-GAQLFV 197 P E F+ GD V VL ++ ++ + Sbjct: 410 TQRVKHPSEMFQKGDEVEAVLLNIDTADGEKPKISL 445 >UniRef50_Q9ZKF6 30S ribosomal protein S1 n=44 Tax=Epsilonproteobacteria RepID=RS1_HELPJ Length = 552 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 15/133 (11%) Query: 73 KEITLEAARYEDESLNLGDYVEDQ-IESVTFDRITTQTAKQVIVQKVREAERAMVVDQFR 131 EI+ + ++ GD V + I R + + K I E + + Sbjct: 229 SEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEIQDKL------ 282 Query: 132 EHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLY 184 G I VV + + +D+GN+ E + ++ P G + + Sbjct: 283 -KPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPSHYLSVGQEIDVKII 341 Query: 185 SVRPEARGAQLFV 197 + P+ R ++ + Sbjct: 342 DIDPKNRRLRVSL 354 Score = 41.8 bits (97), Expect = 0.058, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 77 LEAARYEDESLNLGDYVEDQI-ESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEG 135 + + + +GD ++ +I + D+ + +AK ++ E + + Sbjct: 405 WDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSPTEEFAQ-------KHKTD 457 Query: 136 EIITGVVKKVNRDNISLDLGNNAEAVILREDMLP--RENFRPGDRVRGVLYSVRPEARGA 193 +I G V + + + + + +I ED+ P ++ + G + V+ ++ Sbjct: 458 SVIQGKVVSIKDFGVFIH-ADGIDVLIKNEDLNPLKKDEIKIGQEITCVVVAIEKSNNKV 516 Query: 194 QLFVTRSKPEMLIELFRIE 212 R+ L E Sbjct: 517 -----RASVHRLERKKEKE 530 Score = 41.8 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 8/122 (6%) Query: 109 TAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML 168 + K+ I Q+ +A+ + + + E II G + N+ ++ E + R Sbjct: 93 SYKKAISQQKIQAKIEELGENY---ENAIIEGKIVGKNKGGYIVE-SQGVEYFLSRSHSS 148 Query: 169 -PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEV-PEIGEEVIEIKAA 226 + G R++ + V E + ++R + + + ++E+ E+ E + Sbjct: 149 LKNDANHIGKRIKACIIRVDKENH--SINISRKRFFEVNDKRQLEISKELLEATEPVLGV 206 Query: 227 AR 228 R Sbjct: 207 VR 208 Score = 41.8 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 35/76 (46%), Gaps = 9/76 (11%) Query: 129 QFREHEGEIITGVVKKVNRDNISLDLGNNAEAVI------LREDMLPRENFRPGDRVRGV 182 + + G+I+ G V + L+LG + ++ +D +++++ GD ++ Sbjct: 366 ESKHQVGDIVEGKVATLTDFGAFLNLG-GVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVK 424 Query: 183 LYSVRPEARGAQLFVT 198 + + + + ++ ++ Sbjct: 425 ILKINKKDK--KISLS 438 >UniRef50_A9BGS2 RNA binding S1 domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGS2_PETMO Length = 532 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 51/131 (38%), Gaps = 9/131 (6%) Query: 100 VTFDRITTQTAKQVIVQKVREAERAMVVDQFRE-HEGEIITGVVKKVNRDNISLDLGNNA 158 ++ ++ K ++V +++ + F E EG +I GVV+ + + L ++ Sbjct: 145 EKMAKVISKNGKNIVV-SIKDYAEEKISQTFNEYEEGMVIDGVVEDIKNFGAFVRLNDHL 203 Query: 159 EAVILREDMLPREN------FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIE 212 +I ++ E + G +V+ ++ + E + L + R K + Sbjct: 204 NGLIPASEVSWDEKISIKDYLKVGQKVKALIIKLDREKKRISLSLKRLKENPWKTVDEKY 263 Query: 213 -VPEIGEEVIE 222 + I + + Sbjct: 264 PIGSIVQGTVT 274 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 51/131 (38%), Gaps = 12/131 (9%) Query: 71 PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQF 130 P E++ + + L +G V+ I + ++ + +++++E V +++ Sbjct: 208 PASEVSWDEKISIKDYLKVGQKVKALIIKLDREKKRISLS----LKRLKENPWKTVDEKY 263 Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPREN------FRPGDRVRGVLY 184 G I+ G V K+ ++ + E ++ ++ GD V+ + Sbjct: 264 P--IGSIVQGTVTKILPFGFTVKIDEGLEGLVHETEIFWGRKGRISDLVNVGDDVQVKIL 321 Query: 185 SVRPEARGAQL 195 ++ E + L Sbjct: 322 NIDKENKKINL 332 >UniRef50_Q8KTS5 Ribosomal protein S1 n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTS5_TREPR Length = 518 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 19/133 (14%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE---RAMVVDQ 129 +I+ R+ + L++GD + ++ FDR K + +++ A ++ + Sbjct: 221 TDISWRRIRHPSQVLSVGDRITVKVL--KFDRT-----KTRVSLGLKQLHPDPWAGIIGR 273 Query: 130 FREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDM-------LPRENFRPGDRVRGV 182 + G + G V + + +++ E ++ +M + +FR G V Sbjct: 274 YPA--GSRVRGRVTNIADYGLFVEIERGIEGLLHVSEMHQKSKGTISLRHFRVGQYVNVT 331 Query: 183 LYSVRPEARGAQL 195 + V R L Sbjct: 332 VLDVSKTRRRISL 344 Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 50/133 (37%), Gaps = 9/133 (6%) Query: 83 EDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVV 142 +D G + + + R +++ ++++ + R ++ + G+++ GV+ Sbjct: 142 KDAERYEGRRLRFHVIKLDRKRGNVVLSRRSVIERRQAENRNRLLASLGD--GDVVQGVI 199 Query: 143 KKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLF 196 K + +DLG + ++ D+ P + GDR+ + L Sbjct: 200 KNITDYGAFIDLG-GLDGLLHITDISWRRIRHPSQVLSVGDRITVKVLKFDRTKTRVSLG 258 Query: 197 VTRSKPEMLIELF 209 + + P+ + Sbjct: 259 LKQLHPDPWAGII 271 >UniRef50_C1SLB2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SSU ribosomal protein S1P n=2 Tax=Bacteria RepID=C1SLB2_9BACT Length = 848 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLP-RE-NFRPGDRVRGVLYSVRP 188 + + I+ G V ++N +++ +++G E V+ + + E + GD V + + Sbjct: 310 QPEKNSIVQGTVAQINENDVLVNIGFKTEGVVPSAEFMKDGEITIKVGDEVDVLFLGI-- 367 Query: 189 EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIK 224 G + ++R E + +E E +EIK Sbjct: 368 AGGGGYVKLSRKAIEKEADWIEVEKALEEETPVEIK 403 Score = 49.5 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 69/168 (41%), Gaps = 18/168 (10%) Query: 55 DFDTFRRWLVVDEVTQPTKEITL-EAARYEDESLNLGDYVEDQIESVTFDRITTQT-AKQ 112 DF F + + K+I+ + DE GD +E ++ + ++ KQ Sbjct: 666 DFGIFVDFGEFLDGLIRKKDISWTDEPENLDELYKEGDEIEAKVLKIDAEKERISLGVKQ 725 Query: 113 VIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML---- 168 + RE + + G+++ V V+++ + ++L + I ++ Sbjct: 726 LETNPWREIGKLL-------PNGKVVEVKVLAVSKEGLEVELPRDLIGFIPDNELDVEKV 778 Query: 169 -PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPE 215 P + F GD ++ V++ R +AR ++ ++ + + + EV E Sbjct: 779 DPTDKFAVGDTIKAVVF--RNDAREKKILLS--IRRYMQDSEKREVKE 822 Score = 45.2 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 79/209 (37%), Gaps = 32/209 (15%) Query: 6 LAVVEAVSNEKALPREKIFE--ALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63 L +++++ EK +I E L+ ++ T K Y ++ G D F R Sbjct: 465 LQMIQSIEKEKKEFFSQIEEGQILKGSVKTI--KHYGAFMNF--------GAVDGFLRK- 513 Query: 64 VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123 I ++ ++ + GD +E +I ++ F+ + +V +++++E Sbjct: 514 ---------NNIAWGVVKHPNQYIEEGDELEVKILNIDFE----EEKLEVGLKQMQEDPW 560 Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML----PRENFRPGDRV 179 D++ EG + G V +++ + I E++ R P D V Sbjct: 561 DSAYDKYP--EGGTVAGTVVARKNKGFVMEIEQGIDGFIPLEEISWLKNARIAIEPKDAV 618 Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIEL 208 G + + E + + + + + L Sbjct: 619 EGKIIGIDDEKKKLIVSLKSIQENPWVTL 647 Score = 41.4 bits (96), Expect = 0.073, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 19/173 (10%) Query: 33 TATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDY 92 +A K E + RK+ F + + P +EI+ + ++ D Sbjct: 562 SAYDKYPEGGTVAGTVVARKNKGFVMEIEQGI--DGFIPLEEISWL--KNARIAIEPKDA 617 Query: 93 VEDQIE-SVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNIS 151 VE +I + + K + E V + + EG I G +K + I Sbjct: 618 VEGKIIGIDDEKKKLIVSLKSI-------QENPWVTLKTKHPEGSAIKGTIKSITDFGIF 670 Query: 152 LDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYSVRPEARGAQLFV 197 +D G + +I ++D+ E ++ GD + + + E L V Sbjct: 671 VDFGEFLDGLIRKKDISWTDEPENLDELYKEGDEIEAKVLKIDAEKERISLGV 723 >UniRef50_Q7X2Y7 Putative 30S ribosomal protein S1 (Fragment) n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X2Y7_9BACT Length = 318 Score = 53.3 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 17/149 (11%) Query: 87 LNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVN 146 +N GD VE ++ SV + + Q +++ + +++ G + G V+ + Sbjct: 13 VNPGDTVEVEVLSVDPK---ARRISLGMKQ-IQDNPWQTLHERY--QVGTRVHGRVRNLT 66 Query: 147 RDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYSVRPEARGAQLFVTR 199 +++ + + ++ D+ P E + G + V+ S+ E R L + Sbjct: 67 DFGAFIEIEDGVDGLVHVSDISWSRRIKHPSEVLKKGQEIDAVITSIDAENRRLSLSIKD 126 Query: 200 SKPEMLIELFRIEVPEIGEEVIEIKAAAR 228 +P P + AR Sbjct: 127 LEPNAWDRFLTEHKP----GDVVRGKIAR 151 >UniRef50_B5YH71 30S ribosomal protein S1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH71_THEYD Length = 534 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 6/98 (6%) Query: 115 VQKVREAERAMVVDQFREHE--GEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRE- 171 Q + E + + H GEII G + V D + +D+G E +I + E Sbjct: 3 NQLSEKQELESLYEGSLSHIERGEIIKGKIMGVRNDGVIVDVGYKFEGIIPLNEFSEEEL 62 Query: 172 -NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIEL 208 N + D + + + + ++R + + Sbjct: 63 KNIKEADEIEVFIEKIDDAQG--IISLSRDRALKIKGW 98 Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARG 192 GEI V K + +D+ E ++ ++ + GD ++ ++ V E R Sbjct: 462 KIGEIYNAKVIKKTEHGLFVDIEGIVEGLVYNSEIDKNRTVKEGDEIKVIVVKVDKEKR- 520 Query: 193 AQLFVTRSKPE 203 ++ ++ K + Sbjct: 521 -KIGLSMKKID 530 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 18/186 (9%) Query: 37 KKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQ 96 KKY + VR ++ R DF F E E+ A ++ + +++ + Sbjct: 285 KKYHPGMKVRGKVTRVE-DFGLFVELEEGVEGLVHVSELDWIAPKHPTYYAEVDEWINVK 343 Query: 97 IESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGN 156 + + + Q ++ +V ++ G+ I+G VK + I + L Sbjct: 344 VLDID---RENRKISLSFKQ-LKPKPWEVVAKKY--KVGDRISGKVKTITDFGIFVRLPE 397 Query: 157 NAEAVILREDML-------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELF 209 + +I D+ P + F+ G +V V+ S+ PE ++ ++ + + Sbjct: 398 GVDGLIHISDISWTKHIDHPSQIFKKGQKVDAVILSLEPEKEK----LSLGIKQLSEDPW 453 Query: 210 RIEVPE 215 E+PE Sbjct: 454 IKEIPE 459 >UniRef50_A6TRF8 RNA binding S1 domain protein n=2 Tax=Alkaliphilus RepID=A6TRF8_ALKMQ Length = 383 Score = 53.0 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 25/162 (15%) Query: 110 AKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML- 168 + + + E E++++ R GE++TG V +V+ I++++G A+ ++ R+++ Sbjct: 1 MSHDMEELMEEIEKSLI----RPKRGEVVTGKVIQVSDKGITVNIGYKADGIVPRDEISN 56 Query: 169 -----PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIE----------LFRIEV 213 P++ + D + + L R + E L +V Sbjct: 57 DPTITPQDVAKADDEISVYIIKTDDGEGNVLLSTKRVEHTKGWEDLEKIHDTESLVESKV 116 Query: 214 PEIGEEVIEIKAAARDPGSRAKI-AVKTNDKRIDPVGACVGM 254 E + + A AR G R I A + +D+ +D + VG Sbjct: 117 VESVKGGVI--AIAR--GIRCFIPASQLSDRYVDDLKTFVGK 154 Score = 42.5 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 72/209 (34%), Gaps = 30/209 (14%) Query: 2 NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 NK +L+ E + E + +F LE + + K V I G Sbjct: 168 NKAVLSRKEVLQQENKEKKADVFAKLEKGMQIRGEVKRLTNFGAFVDIGGIDGLVHI--- 224 Query: 62 WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQ-IESVTFDRITTQTAKQVIVQKVRE 120 E++ + E +++ D VE + I+ + + KQ + Sbjct: 225 -----------SELSWGRVKNPSEVVSVEDQVEVKVIDFDETTGKVSLSIKQT-----QP 268 Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFR 174 ++ D+F G+I+ G V ++ ++L + ++ + P E Sbjct: 269 EPWTLIADKF--KAGDILEGKVVRLVDFGAFVELMPGLDGLVHISQISEAHIAKPSEELH 326 Query: 175 PGDRVRGVLYSVRPEARGAQLFVTRSKPE 203 G V + + + + ++ ++ + + Sbjct: 327 VGQNVNVKVLDINIDGK--RISLSMTAAQ 353 Score = 41.0 bits (95), Expect = 0.093, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 49/123 (39%), Gaps = 9/123 (7%) Query: 89 LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD 148 +G ++ + + +++ ++Q+ + ++A V + +G I G VK++ Sbjct: 152 VGKSFNAKVIEIDRQKNKAVLSRKEVLQQENKEKKADVFAKLE--KGMQIRGEVKRLTNF 209 Query: 149 NISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 +D+G + ++ ++ P E D+V + L + +++P Sbjct: 210 GAFVDIG-GIDGLVHISELSWGRVKNPSEVVSVEDQVEVKVIDFDETTGKVSLSIKQTQP 268 Query: 203 EML 205 E Sbjct: 269 EPW 271 >UniRef50_Q3YRK4 SSU ribosomal protein S1P n=21 Tax=Rickettsiales RepID=Q3YRK4_EHRCJ Length = 567 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 52/110 (47%), Gaps = 12/110 (10%) Query: 122 ERAMVVDQFRE---HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFR---P 175 E + +F + EG+II G + +++ +++D G +E+++ ++ ++++ Sbjct: 44 EFQNALKEFIDDSVKEGQIIEGTIVCIDKGYVTIDSGLKSESIVSLKEFELGDDYQNIGI 103 Query: 176 GDRVRGVLYSVRPEARGAQLFVTR--SKPEMLIELFRI--EVPEIGEEVI 221 G +V+ L + E R + ++R + + L + E E E VI Sbjct: 104 GSKVKLYLEKI--EGRNGSVVLSREKAIRDELWQKLEEAAERKEDVEGVI 151 >UniRef50_B3WE79 30S Ribosomal protein S1 n=52 Tax=Firmicutes RepID=B3WE79_LACCB Length = 439 Score = 52.2 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 50/129 (38%), Gaps = 9/129 (6%) Query: 90 GDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDN 149 G +E +I + + + IV+ + R + + + G+ + G V ++ Sbjct: 160 GKELEFKIIEIEPSENRLILSHRAIVEASKAEARKEIFAKIQP--GDTVEGKVARLTNFG 217 Query: 150 ISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPE 203 +DLG + ++ ++ P + + G ++ + +V P+ L + + P+ Sbjct: 218 AFVDLG-GVDGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQ 276 Query: 204 MLIELFRIE 212 ++ Sbjct: 277 PWDDIEEKA 285 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 14/132 (10%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQ-TAKQVIVQKVREAERAMVVDQFR 131 EI+ + + L +G ++ ++ +V DR + K + Q + E Sbjct: 232 SEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAPA---- 287 Query: 132 EHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYS 185 G ++TG VK++ +++ E ++ + P + + G V+ + S Sbjct: 288 ---GSVLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLS 344 Query: 186 VRPEARGAQLFV 197 V P+A L + Sbjct: 345 VDPDAHRLALSI 356 >UniRef50_Q0TNG2 Ribosomal protein S1 family n=9 Tax=Clostridium perfringens RepID=Q0TNG2_CLOP1 Length = 378 Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 15/132 (11%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDR-ITTQTAKQVIVQKVREAERAMVVDQFR 131 +++ +E +++GD VE + V DR + K VI E Sbjct: 224 SDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRERIALSLKDVIKNPWETLE--------G 275 Query: 132 EHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYS 185 G++++G V + +++ E ++ ++ P + G V+ + + Sbjct: 276 LKVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILN 335 Query: 186 VRPEARGAQLFV 197 + E + L + Sbjct: 336 IDDENKKMSLSI 347 Score = 49.9 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 9/140 (6%) Query: 89 LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD 148 +G +E ++ + +++VI +++R E+ + EGE G V ++ + Sbjct: 151 VGKTLEVRVIEFNKENRKVVVSRRVIDEEIRNNEKKALWS--SIKEGEKRKGKVTRLAKF 208 Query: 149 NISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 +D+G E ++ DM P E GD V + V + L + Sbjct: 209 GAFVDIG-GVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDRERIALSLKDVIK 267 Query: 203 EMLIELFRIEVPEIGEEVIE 222 L ++V ++ + Sbjct: 268 NPWETLEGLKVGDVVSGKVT 287 Score = 48.7 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 66/180 (36%), Gaps = 35/180 (19%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPG-----DRVRGVLYSVRP 188 +GEI+ G V V D I +++G+ A+ V+ R ++ +NF D + ++ S Sbjct: 21 KGEIVKGKVISVKNDEIIVNIGHFADGVVPRNEISNDKNFDINSINVDDDIFVMVLSGDD 80 Query: 189 EARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPV 248 L R+ + + + E + +K + Sbjct: 81 GEGNVLLSKKRADAIKVWDDLKEAFEEEKSIKVSLKEVVK-------------------- 120 Query: 249 GACVGM-RGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDI 307 G VG G RV +++ G RI +N + V + +V I +++ + + Sbjct: 121 GGIVGDFNGLRVFMPASQCAGRRI------ENLEELVGKTL---EVRVIEFNKENRKVVV 171 >UniRef50_D2R4L6 Ribosomal protein S1 n=7 Tax=Planctomycetales RepID=D2R4L6_9PLAN Length = 600 Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 64/173 (36%), Gaps = 21/173 (12%) Query: 65 VDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA 124 VD + I L+ +E +G V IE + D ++ R+A++ Sbjct: 61 VDIGFKSEGSIPLDEWEEGEEPPQVGQLVRVLIEDLE-DETAAPEDGGMVRISKRKAKKL 119 Query: 125 MVVDQFREH--EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRV--- 179 + + EG+++TG V + + + +D+ + + R GD + Sbjct: 120 DAWKEMMDRIKEGQVVTGTVSRKIKGGLLVDI-EGVNVFLPASQVDIRRPADIGDYIGRT 178 Query: 180 -RGVLYSVRPEARGAQLFVTRSKPEMLIE---------LFRIEVPEIGEEVIE 222 + + + R + V+R ++ L +E+ ++ + V++ Sbjct: 179 VQCEVLKIDEARRN--IVVSR--RSLIERQREEDREALLKELEIGQVRKGVVK 227 Score = 51.4 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 36/75 (48%), Gaps = 8/75 (10%) Query: 135 GEIITGVVKKVNRDNISLDLGNNAEAVILREDM------LPRENFRPGDRVRGVLYSVRP 188 G++++G V K+ + + L + E ++ ++ P + + GD++ + V Sbjct: 479 GQVVSGAVTKITNFGVFVGLEDGLEGLLHISELADHKVENPEDVVKVGDKIDVKILRVDI 538 Query: 189 EARGAQLFVTRSKPE 203 + R ++ ++R + E Sbjct: 539 DER--KIGLSRKRVE 551 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 6/100 (6%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPREN-FRPGDRVRGVLYSVRPEARG 192 +I+ G V +V + +D+G +E I ++ E + G VR ++ + E Sbjct: 43 VNKIVEGRVLRVADGMVLVDIGFKSEGSIPLDEWEEGEEPPQVGQLVRVLIEDLEDETAA 102 Query: 193 AQ----LFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAAR 228 + + +++ K + L + + I E + +R Sbjct: 103 PEDGGMVRISKRKAKKLDAWKEM-MDRIKEGQVVTGTVSR 141 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 13/120 (10%) Query: 85 ESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKK 144 E +N+GD + I V Q + Q +E V +++ I+ G V+ Sbjct: 347 ELVNIGDEISVVILGVD---KDGQQLSLGMKQT-QENPWTRVAEKYP--VDTIVEGKVRN 400 Query: 145 VNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYSVRPEARGAQLFV 197 + ++L + ++ DM P E G VR + SV E R L + Sbjct: 401 LTNYGAFVELEEGIDGLLHVSDMSWTRKISHPSEMLEKGQPVRCKILSVDQERRRIALGL 460 Score = 45.2 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 8/96 (8%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYSV 186 G ++ G V V + L E ++ +M P E GD + V+ V Sbjct: 303 VGTVVKGSVVNVMSYGAFVKLEPGIEGLVHISEMSWTRRVNHPSELVNIGDEISVVILGV 362 Query: 187 RPEARGAQLFVTRSKPEMLIELFRIE-VPEIGEEVI 221 + + L + +++ + V I E + Sbjct: 363 DKDGQQLSLGMKQTQENPWTRVAEKYPVDTIVEGKV 398 >UniRef50_A9KLR6 Hydroxymethylbutenyl pyrophosphate reductase n=58 Tax=Bacteria RepID=A9KLR6_CLOPH Length = 643 Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 66/170 (38%), Gaps = 31/170 (18%) Query: 57 DTFRRWLV----VDEVTQPTKEITLEAARYEDESLNLGDYVE----------DQIESVTF 102 + F V V V + ++ AR + D E + F Sbjct: 385 EAFNNKEVLKAKVAAVLDGGLSVIVDEARIFIPASLASDTYEKNLDKFKDQEIEFVISEF 444 Query: 103 D---RITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAE 159 + R KQ++V K +E +A+ + G+++ G VK V +DLG A+ Sbjct: 445 NPKRRRIIGDRKQLLVAKKQELSKALFA---KIKVGDVVEGTVKNVTDFGAFIDLG-GAD 500 Query: 160 AVILREDM------LPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPE 203 ++ +M P++ F+ GD V+ + + +G ++ ++ PE Sbjct: 501 GLLHISEMSWGRIESPKKVFKVGDTVKAFIKDI----QGEKIALSLKFPE 546 Score = 45.2 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 16/132 (12%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAE-RAMVVDQFR 131 E++ + +GD V+ I Q K + K E A +++ Sbjct: 506 SEMSWGRIESPKKVFKVGDTVKAFI-------KDIQGEKIALSLKFPEQNPWANASEKYA 558 Query: 132 EHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYS 185 G ++TG V ++ ++L +A++ + P + + G V + Sbjct: 559 --VGNVVTGRVARMTEFGAFVELEPGVDALLHVSQISKEHIEKPADALKIGQEVTAKVVD 616 Query: 186 VRPEARGAQLFV 197 + + L + Sbjct: 617 FNNDEKKISLSI 628 Score = 43.7 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 8/113 (7%) Query: 108 QTAKQVIVQKVREAERAMVVDQFREHE--GEIITGVVKKVNRDNISLDLGNNAEAVILRE 165 + + ++ E ++++ GE++ G V +V D I L++G A+ ++ R Sbjct: 274 NNIIKEVHTRMAEMSFEQLLEESLVTIHNGEVVDGTVIRVKEDEIVLNIGYKADGILTRN 333 Query: 166 DML--PRENFR----PGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIE 212 + P + R GD + + V L R E + Sbjct: 334 EYTNQPNVDLRTVANEGDTMTVKVLKVNDGEGQVLLTYKRLAAEKGSKRLEEA 386 >UniRef50_A4SGB6 SSU ribosomal protein S1P n=12 Tax=Chlorobiaceae RepID=A4SGB6_PROVI Length = 602 Score = 51.8 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 46/101 (45%), Gaps = 2/101 (1%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGA 193 + EI+ G + ++ ++++D+G +E ++ + + + GD V L ++ + Sbjct: 59 QDEIVKGRIVSISNKDVTIDVGYKSEGIVSLLEFRDEDEIQVGDDVEVYLENIED--KMG 116 Query: 194 QLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRA 234 QL +++ K ++L +I + +I K R G Sbjct: 117 QLILSKKKADVLRIWDKIYDSIENDTIISGKIINRVKGGMT 157 Score = 43.7 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 7/88 (7%) Query: 134 EGEIITGVVKKVNRDNISLDLGNNAEAVILREDML-------PRENFRPGDRVRGVLYSV 186 G G V + +++ E ++ +M P + G V V+ ++ Sbjct: 312 VGSKAQGRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNI 371 Query: 187 RPEARGAQLFVTRSKPEMLIELFRIEVP 214 + L + R + I L V Sbjct: 372 DKDHTKLSLSMKRVNEDPWIALSEKYVE 399 >UniRef50_A6DP56 30S ribosomal protein S1 n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DP56_9BACT Length = 463 Score = 51.4 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 20/179 (11%) Query: 25 EALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYED 84 +AL A +K E V I+ + G + L + P ++ +R D Sbjct: 100 DALNETFEAAYSEKIPVEGKV---IEERKGGYTV---NLSGNMAFCPYSQM---DSRPGD 150 Query: 85 ESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKK 144 SL LG I + DR +++ ++ + E +R + ++ EG+ I GV+++ Sbjct: 151 ASLYLGQTFSFLITKID-DRGAV-VSRRDYLKILAEKQREKLQEELV--EGDEIEGVIRR 206 Query: 145 VNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFV 197 + R +DLG + ++ ++ E GD+V + ++ E L + Sbjct: 207 IERFGFFVDLG-GVDGLVPASEVSWKRNVDLNEFVSVGDQVSCKILALDWEKGRITLSL 264 Score = 45.2 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 7/69 (10%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML--PRE-NFRPGDRVRGVLYSVRPE 189 GE + G + +++ +I +D G E +I ++L E + GD + + + Sbjct: 30 KSGEAVKGKITLIDKSSIFVDFGARCEGIIPLGEVLDNKGELELKVGDEIEAWVLN---- 85 Query: 190 ARGAQLFVT 198 RG ++ +T Sbjct: 86 DRGGEISLT 94 >UniRef50_C7H149 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H149_9FIRM Length = 703 Score = 51.4 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 8/88 (9%) Query: 131 REHEGEIITGVVKKVNRDNISLDLGNNAEAVILRED------MLPRENFRPGDRVRGVLY 184 GEI+ GV+ +N I ++LG + +I + R+ F GD ++ + Sbjct: 318 SPKTGEIVEGVIDAINDKEIVVNLGCKKDGIIPNSEVALEEGQTIRDLFSVGDEIQAKVL 377 Query: 185 SVRPEARGAQLFVTRSKPEMLIELFRIE 212 + ++R K E + +E Sbjct: 378 KTDDGDG--SILLSRRKMEASVHWAELE 403 >UniRef50_A8YV34 30S ribosomal protein S1 n=29 Tax=Lactobacillus RepID=A8YV34_LACH4 Length = 403 Score = 51.4 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 55/141 (39%), Gaps = 17/141 (12%) Query: 89 LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREH--EGEIITGVVKKVN 146 +G ++ +I + ++ + + ++ E ER D+ G++I G V ++ Sbjct: 154 IGKTMKLKITEIDPNKNRLILSHKDLI----EEEREEAFDKVASQLVVGDVIEGKVSRLT 209 Query: 147 RDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRS 200 +D+G + ++ ++ P + + G V+ + + + L + ++ Sbjct: 210 NFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQT 268 Query: 201 KPEMLIELFRIEVPEIGEEVI 221 +P F ++ E + Sbjct: 269 EPSP----FEQATADLNEGDV 285 Score = 43.7 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 14/132 (10%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 EI+ + + L G V+ ++ + DR I +++ E + + Sbjct: 227 SEISYKHVDKPSDVLKAGQDVKVKVIGIDDDR-------HRISLSIKQTEPSPFEQATAD 279 Query: 133 H-EGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYS 185 EG++ G VK + +++ + + ++ ++ P + + V+ + + Sbjct: 280 LNEGDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVDQTVKVKVLN 339 Query: 186 VRPEARGAQLFV 197 + P R L + Sbjct: 340 IDPSDRRISLSI 351 >UniRef50_B9MRX3 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MRX3_ANATD Length = 663 Score = 51.0 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 47/94 (50%), Gaps = 8/94 (8%) Query: 118 VREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR------E 171 +++ ER + GE++ G + KV D + +D+G AE +I +++++ + Sbjct: 288 LKDFERLIDRSFLTVQRGEVVNGRIIKVEEDYLLVDIGYKAEGIIYKDEVIKNGNVNLKD 347 Query: 172 NFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEML 205 F+ G+ + V+ ++ + +++ + ++L Sbjct: 348 LFKIGEVIEAVV--IKESDEEGNVVLSKYRADIL 379 Score = 42.5 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 61/169 (36%), Gaps = 22/169 (13%) Query: 56 FDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQI-ESVTFDRITTQTAKQVI 114 + + +V + + + + ++ ++G E +I + +I + K ++ Sbjct: 399 VKSIKEKSIVCDFRGTNVYVPISQWGEDVQTSDIGKIFEIEITDVSKEKKIAFGSRKSLL 458 Query: 115 VQKVREAERAMVVDQFREHEGEI-----ITGVVKKVNRDNISLDLGNNAEAVILREDMLP 169 Q RE ER F + + G V ++ I ++ N + ++ Sbjct: 459 KQ--REEER------FIKQINSLDFSREYEGTVVEIREKGIVVNF-ENLRGFVPASEIGY 509 Query: 170 REN-------FRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRI 211 + F G++V+ + + + L V +++ + I+ + Sbjct: 510 LKKGAGIKKLFELGEKVKVKILDIDKNKKQIYLSVKKTQDDEWIKKIKN 558 >UniRef50_A3ZTD7 30S ribosomal protein S1 n=2 Tax=Bacteria RepID=A3ZTD7_9PLAN Length = 536 Score = 51.0 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 87/259 (33%), Gaps = 41/259 (15%) Query: 64 VVDEVTQPTKEITLEAARYEDESLNL------------GDYVEDQIESVTFDRITTQTAK 111 VVD V + E + AR + + G ++ + +R + Sbjct: 248 VVDGVNKGGLECAVGQARGFIPASQIAPHHVTNMEDYLGQKLQCLVTEANPERRNLVLSA 307 Query: 112 QVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML--- 168 + + +K +E R + G++ G V ++ +D+G + ++ + Sbjct: 308 RAVAEKAKEDSRKETMVTL--QVGQMRDGTVTRLQDFGAFVDIG-GVDGLVHVSQISWDR 364 Query: 169 ---PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKA 225 P + G VR + + PE L + + ++ E I Sbjct: 365 VKHPSDALSEGQAVRVKVTKIDPETGKIGLSIRDTLENPWQKVAE----EFSVGAI---- 416 Query: 226 AARDPGSRAKI----AVKTNDKRIDPVGACVGMRGARVQAVSTELG-GERIDIVLWDDNP 280 G KI A I+ + + RV + + L GE++++ + + + Sbjct: 417 ---INGKVTKIMDFGAFVEIAPGIEGLVHVSEVSHTRVSRIESVLKAGEKVEVKVVNIDK 473 Query: 281 AQ----FVINAMAPADVAS 295 + I A++PA + Sbjct: 474 EKRRIGLSIKALSPAPASK 492 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 63/166 (37%), Gaps = 15/166 (9%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 +I+ + ++ ++L+ G V ++ + T I + E V ++F Sbjct: 358 SQISWDRVKHPSDALSEGQAVRVKVTKID---PETGKIGLSIRDTL-ENPWQKVAEEFS- 412 Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRE------NFRPGDRVRGVLYSV 186 G II G V K+ +++ E ++ ++ + G++V + ++ Sbjct: 413 -VGAIINGKVTKIMDFGAFVEIAPGIEGLVHVSEVSHTRVSRIESVLKAGEKVEVKVVNI 471 Query: 187 RPEARGAQLF---VTRSKPEMLIELFRIEVPEIGEEVIEIKAAARD 229 E R L ++ + + E PE + +++K A + Sbjct: 472 DKEKRRIGLSIKALSPAPASKSGGKKKDEEPEDLDRALKVKPTASE 517 >UniRef50_B4D0J0 Amino acid adenylation domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0J0_9BACT Length = 619 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 39/98 (39%) Query: 20 REKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEA 79 RE + AL A AT + D ID S + ++ VV+ V EI E Sbjct: 147 REAMLAALRKAARGATGELVGAARDSGAGIDPTSDEVKLSAKFRVVETVENEENEIGFEL 206 Query: 80 ARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQK 117 A + +G+ +E + F R+ A + + ++ Sbjct: 207 ATTLKADIQVGEDLELLLSPQEFGRVLGLIAAEAMKRR 244 >UniRef50_Q5JET4 Pko radA intein n=2 Tax=Euryarchaeota RepID=RADA_PYRKO Length = 836 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 3/114 (2%) Query: 342 DDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEP 401 + Q++ I + A L E G+ T+E +A EL EI G+ E Sbjct: 25 SLSSSDKQSKPEKKISALEDLPGVGPATAEKLREAGYDTIEAIAVASPLELKEIAGISEG 84 Query: 402 TVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCT 455 + + A+ A + + KL G+ T Sbjct: 85 AALKIIQAAREA---ANIGTFMRADEYMKRRTTIGKISTGSKALDKLLGGGIET 135 Score = 48.3 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%) Query: 420 AQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAG 479 + ++ K L +L GV A KL G T+E +A +L +I G+++ A Sbjct: 28 SSDKQSKPEKKISALEDLPGVGPATAEKLREAGYDTIEAIAVASPLELKEIAGISEGAAL 87 Query: 480 ALIMAARNI 488 +I AAR Sbjct: 88 KIIQAAREA 96 >UniRef50_B8CWY2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWY2_HALOH Length = 678 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 8/98 (8%) Query: 133 HEGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSV 186 +G+ + G V ++ + + +D+G E +I ++ P E G+ + ++ ++ Sbjct: 304 KKGQQVKGKVVEIGDNGVYVDVGYKTEGLIPLRELSHRDFEDPHEIVEEGEEIDVIVLTL 363 Query: 187 RPEARGAQLFVTRSKPEMLIE--LFRIEVPEIGEEVIE 222 E L R+ E E L E EI E + Sbjct: 364 EDEEGNMVLSKKRADFEKAWERILKAYENDEIIEAEVT 401 Score = 46.8 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 57/141 (40%), Gaps = 10/141 (7%) Query: 89 LGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRD 148 +G + ++ V D+ + + ++++ RE ++ +++ EG+++ G V K+ Sbjct: 435 VGKTLRLKVIEVERDKNNVVLSAKKVLEEEREKQKEKTLEEL--QEGQVVKGKVTKIVDF 492 Query: 149 NISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKP 202 +DLG E ++ +M P E G + + +V E L + + P Sbjct: 493 GAFVDLG-GIEGLLHISEMSWGRIEHPSEVLEEGQEIEVKVLAVNKEEERISLGLKQLLP 551 Query: 203 EMLIELFRIEVP-EIGEEVIE 222 + E + E+ I Sbjct: 552 DPWEEFAKKHYEGEVVSGTIT 572 Score = 45.2 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 54/133 (40%), Gaps = 16/133 (12%) Query: 73 KEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRE 132 E++ + E L G +E ++ + ++ I +++ ++F + Sbjct: 508 SEMSWGRIEHPSEVLEEGQEIEVKV-------LAVNKEEERISLGLKQLLPDP-WEEFAK 559 Query: 133 H--EGEIITGVVKKVNRDNISLDLGNNAEAVILREDML------PRENFRPGDRVRGVLY 184 EGE+++G + K+ +++ N E +I + P E G+ ++ + Sbjct: 560 KHYEGEVVSGTITKIVDFGAFMEIENGIEGLIHISQLSHRHVKTPDEVVSVGEEIKAEII 619 Query: 185 SVRPEARGAQLFV 197 ++ PE + L + Sbjct: 620 NIDPEQKRVGLSI 632 >UniRef50_C6P7Z4 RNA binding S1 domain protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P7Z4_CLOTS Length = 362 Score = 50.6 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 57/133 (42%), Gaps = 15/133 (11%) Query: 67 EVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERA-- 124 + P EI+ + ++ L++G+ V+ +E + K+ + +R+ Sbjct: 212 DGLIPLSEISWVRNKNINDILHIGEKVDAYVERID---------KEKVTLSLRKLIPDPW 262 Query: 125 -MVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR-ENFRPGDRVRGV 182 + +F G++I G + + I +D+ + E ++ + D+L + +R G+ + Sbjct: 263 TTISAKF--KVGDVILGKIVNITTFGIFVDISDGVEGLVHKSDLLKNIKEYRIGENISVE 320 Query: 183 LYSVRPEARGAQL 195 + ++ + L Sbjct: 321 ILNIDTNNKKMSL 333 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.153 0.413 Lambda K H 0.267 0.0470 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,164,757,466 Number of Sequences: 3077464 Number of extensions: 166383632 Number of successful extensions: 543443 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 713 Number of HSP's successfully gapped in prelim test: 958 Number of HSP's that attempted gapping in prelim test: 535426 Number of HSP's gapped (non-prelim): 5875 length of query: 495 length of database: 1,040,396,356 effective HSP length: 133 effective length of query: 362 effective length of database: 631,093,644 effective search space: 228455899128 effective search space used: 228455899128 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 96 (41.4 bits)