BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (330 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P18471 Protein traU n=44 Tax=root RepID=TRAU_ECOLI 689 0.0 UniRef50_B6ICG0 TraU protein n=11 Tax=Gammaproteobacteria RepID=... 457 e-127 UniRef50_D0Z581 IncF plasmid conjugative transfer pilus assembly... 376 e-103 UniRef50_A9L6J8 TraU family protein n=14 Tax=Gammaproteobacteria... 362 8e-99 UniRef50_Q5ZTS6 TraU n=3 Tax=Legionella RepID=Q5ZTS6_LEGPH 347 4e-94 UniRef50_A8QYQ7 TraU protein n=2 Tax=Legionellaceae RepID=A8QYQ7... 345 1e-93 UniRef50_Q4LC37 TraU protein n=2 Tax=Sodalis glossinidius RepID=... 343 3e-93 UniRef50_A5VGR9 TraU family protein n=18 Tax=Alphaproteobacteria... 306 6e-82 UniRef50_C4Z005 Sex pilus assembly n=1 Tax=Rickettsia endosymbio... 278 2e-73 UniRef50_Q3IUV9 TraU n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID... 278 3e-73 UniRef50_C4YVM8 Conjugal DNA transfer protein TraU n=3 Tax=Ricke... 272 1e-71 UniRef50_A8F1T8 Conjugal DNA transfer protein TraU n=17 Tax=Rick... 270 4e-71 UniRef50_B2I3Z5 TraU family protein n=14 Tax=Proteobacteria RepI... 263 5e-69 UniRef50_Q1MY35 TraU n=1 Tax=Bermanella marisrubri RepID=Q1MY35_... 258 2e-67 UniRef50_A5KZG2 Putative uncharacterized protein n=1 Tax=Vibrion... 234 4e-60 UniRef50_Q0F372 Putative uncharacterized protein n=1 Tax=Maripro... 229 1e-58 UniRef50_Q6MB91 Putative F pilus assembly protein traU n=2 Tax=P... 226 7e-58 UniRef50_C5F1U6 Trau protein n=2 Tax=Helicobacter pullorum MIT 9... 224 4e-57 UniRef50_Q4HP78 Trau protein n=1 Tax=Campylobacter upsaliensis R... 222 2e-56 UniRef50_B4RLR4 TraU n=10 Tax=Neisseria RepID=B4RLR4_NEIG2 219 9e-56 UniRef50_Q2LU05 Conjugal DNA transfer protein n=1 Tax=Syntrophus... 214 5e-54 UniRef50_A1AKL4 TraU family protein n=3 Tax=Desulfuromonadales R... 213 8e-54 UniRef50_B0RKU6 TraU family protein n=2 Tax=Yersinia RepID=B0RKU... 195 2e-48 UniRef50_A2SNI5 Conjugal DNA transfer protein n=3 Tax=Burkholder... 176 1e-42 UniRef50_B3CR07 Putative conjugative transfer protein TraU n=1 T... 175 3e-42 UniRef50_Q19NQ7 TrhU n=9 Tax=Enterobacteriaceae RepID=Q19NQ7_ECOK1 172 2e-41 UniRef50_Q5NX39 Sex pilus assembly and synthesis protein n=1 Tax... 171 3e-41 UniRef50_C4NVV3 TraU n=27 Tax=Gammaproteobacteria RepID=C4NVV3_E... 167 5e-40 UniRef50_A9AU19 TraU family protein n=1 Tax=Burkholderia multivo... 163 7e-39 UniRef50_Q8L271 Pilus biogenesis protein n=2 Tax=Enterobacteriac... 163 1e-38 UniRef50_B7XGS0 Putative pilus assembly protein n=2 Tax=Pseudomo... 160 8e-38 UniRef50_C1SHD7 TraU protein n=1 Tax=Denitrovibrio acetiphilus D... 155 2e-36 UniRef50_Q1NGS7 Conjugal DNA transfer protein n=1 Tax=Sphingomon... 146 9e-34 UniRef50_A0L2Z2 TraU family protein n=1 Tax=Shewanella sp. ANA-3... 136 8e-31 UniRef50_B3SF21 Putative uncharacterized protein (Fragment) n=1 ... 108 3e-22 UniRef50_B7J844 Conjugal transfer protein TraU, putative n=1 Tax... 105 2e-21 UniRef50_Q2G6B7 Putative uncharacterized protein n=4 Tax=Sphingo... 103 9e-21 UniRef50_B7LWZ0 Protein traU n=1 Tax=Escherichia coli 55989 RepI... 96 2e-18 UniRef50_C0QUV2 Putative TraU n=1 Tax=Persephonella marina EX-H1... 82 3e-14 >UniRef50_P18471 Protein traU n=44 Tax=root RepID=TRAU_ECOLI Length = 330 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/330 (100%), Positives = 330/330 (100%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT Sbjct: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA 120 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA Sbjct: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA 120 Query: 121 KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL 180 KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL Sbjct: 121 KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL 180 Query: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL Sbjct: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS Sbjct: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 Query: 301 VTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 VTRWETGKNPPNTKKNFGYLMWRKRNCVFL Sbjct: 301 VTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 >UniRef50_B6ICG0 TraU protein n=11 Tax=Gammaproteobacteria RepID=B6ICG0_ECOSE Length = 332 Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust. Identities = 212/325 (65%), Positives = 258/325 (79%), Gaps = 3/325 (0%) Query: 7 LLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMP 66 L+ L L AG+V A D C+G FVNPI+DICW CIFP+S+G + V G PDT NPSMP Sbjct: 10 LIALGLCAGNVLAEDKDKMCDGNFVNPISDICWECIFPMSIGDVSVFDGDAPDTDNPSMP 69 Query: 67 IQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLG-FSLPAFGKTAQGTAKKDEK 125 +QICP P + RIG+AIGYWEP ALTDVTRSP CMVNLG F++P GK G A ++++ Sbjct: 70 LQICPLVP-IGYRIGMAIGYWEPFALTDVTRSPYCMVNLGGFNIPV-GKVGAGNAGQEDR 127 Query: 126 QVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAV 185 V G FYHVHWYKYPLTYWLNII S+ CL+ GD+DI YLSE+DPTW D +L+ IL+PEA+ Sbjct: 128 PVAGGFYHVHWYKYPLTYWLNIIMSIACLQRGDLDIGYLSELDPTWDDDALSLILSPEAL 187 Query: 186 IFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSER 245 + ANPIAQGACAADAI + P++ LFWCAGS GS+YPF G++S+E SP QSS+L+SER Sbjct: 188 VVANPIAQGACAADAIKTVKGKPINALFWCAGSHGSLYPFTGFISDEFSPQQSSVLLSER 247 Query: 246 MAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWE 305 MAFKLHRQGMI+ +IG++ VC EY SPI+PK+R+RYQMVNM+PD+ CHPFGR+V WE Sbjct: 248 MAFKLHRQGMILNSIGEDQKVCKEYYSPIMPKDRFRYQMVNMHPDTKACHPFGRTVMAWE 307 Query: 306 TGKNPPNTKKNFGYLMWRKRNCVFL 330 G PNTKKN+GYL+WRKRNCVFL Sbjct: 308 AGHASPNTKKNYGYLIWRKRNCVFL 332 >UniRef50_D0Z581 IncF plasmid conjugative transfer pilus assembly protein TraU n=3 Tax=Gammaproteobacteria RepID=D0Z581_LISDA Length = 346 Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust. Identities = 172/334 (51%), Positives = 231/334 (69%), Gaps = 5/334 (1%) Query: 2 KRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTA 61 K LW+L L A+++ AC RF+NPITDICW CIFP++LGS+ + + PDT Sbjct: 13 KPLLWVLGFSLLMASNAASASGPACRARFMNPITDICWECIFPITLGSVPLIPSRHPDTP 72 Query: 62 NPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKT---AQG 118 NPS+PI CP PPP+F ++GL IGYWEP A+TDVTR P CMVNLGFSL Q Sbjct: 73 NPSLPISFCPKPPPIFMQVGLNIGYWEPYAITDVTRVPFCMVNLGFSLGGGMSQQIGGQN 132 Query: 119 TAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTT 178 + KK +GAFY HWYKYPL YWL I+ S C+ + D+ YL+E+DP W D L+ Sbjct: 133 SYKKPGDSSSGAFYQAHWYKYPLIYWLQILQSSACMAMDNFDVGYLTELDPFWDDDELSF 192 Query: 179 ILNPEAVIFANPIAQGACAADAI--ASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPL 236 ILNPEA++F NPIAQ AC A+A+ +++F +P+D LFWC GSQGS YP G +P+ Sbjct: 193 ILNPEAILFGNPIAQLACVAEAVKTSTSFFLPIDALFWCMGSQGSAYPLTGNTGYRDTPM 252 Query: 237 QSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHP 296 QS++L++ER+ +KLHRQG++ E++G + AVC ++P PILPK R+RYQ+ N+ P+ C+P Sbjct: 253 QSAVLMAERLNYKLHRQGIVWESLGVDGAVCVQHPMPILPKSRYRYQLSNVIPNPFNCYP 312 Query: 297 FGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 +G + WE+G + P T NFG++ WRKRNCVFL Sbjct: 313 YGTTTAIWESGHDNPVTGDNFGFVQWRKRNCVFL 346 >UniRef50_A9L6J8 TraU family protein n=14 Tax=Gammaproteobacteria RepID=A9L6J8_SHEB9 Length = 337 Score = 362 bits (930), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 165/330 (50%), Positives = 224/330 (67%), Gaps = 5/330 (1%) Query: 6 WLLMLFLFAGHVPA-ASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPS 64 WL+ L L G +P+ A+A +AC G FVNP+TDICWSCIFP+++GS+ + G +PDT NP Sbjct: 8 WLVALSLLMGLIPSQANAQAACTGTFVNPMTDICWSCIFPMTIGSVPIIPGSLPDTRNPV 67 Query: 65 MPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQG--TAKK 122 PI CP PPP+F +IGL IGYWEP L DVTR P CMVN+G L G + Sbjct: 68 SPISFCPKPPPIFMQIGLNIGYWEPDTLVDVTRVPYCMVNMGMKLDMSNSPQIGGRVTSR 127 Query: 123 DEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNP 182 D +GAFYH HWYKYP+ YWL I+ S C+ + DIAYL+EIDP W D L+ ILNP Sbjct: 128 DNDASDGAFYHGHWYKYPVIYWLQIMQSAACMATDNFDIAYLTEIDPLWDDDELSFILNP 187 Query: 183 EAVIFANPIAQGACAADAIASAFN--MPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 EA++F N ++Q ACA +A+A++ N +P D LFWC GSQGS YP G + +P+Q+ Sbjct: 188 EAILFGNLVSQLACATEAVATSTNSILPFDFLFWCMGSQGSAYPLTGTTNYRDTPIQAGT 247 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 L+ ER+ +KLHRQG++ E+ G++ A+C + P P++PK R+RYQM N PD+ HP+ + Sbjct: 248 LILERLNYKLHRQGIVWESHGEDGAICYQTPMPLMPKSRYRYQMTNTIPDALWAHPYTTT 307 Query: 301 VTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 WE+G + P + NFG++ ++KRNCVFL Sbjct: 308 TVIWESGHDNPVSGDNFGFINFKKRNCVFL 337 >UniRef50_Q5ZTS6 TraU n=3 Tax=Legionella RepID=Q5ZTS6_LEGPH Length = 331 Score = 347 bits (889), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 168/333 (50%), Positives = 220/333 (66%), Gaps = 14/333 (4%) Query: 3 RRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIK-VSQGKVPDTA 61 + ++L+ FL +G A S C GRFVNPITD+CWSC+FP SLG VS +PDT Sbjct: 2 KAFFILIAFLASGLTQAGS----CHGRFVNPITDVCWSCLFPFSLGQANLVSSNHLPDTK 57 Query: 62 NPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKT-AQGTA 120 NP +P+ CP P R+GL +GYWEP+ L DVTR+P C+VNLG FGK +G Sbjct: 58 NPKLPVCECPGNP--IPRLGLTMGYWEPVNLVDVTRTPFCLVNLGGISLNFGKYYRKGAV 115 Query: 121 KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL 180 + D N +FYHVHWYK+PL YWLN++T C+E GD DIAY SE+D W D L ++ Sbjct: 116 ETDSNLSNQSFYHVHWYKFPLMYWLNVLTDGICVEKGDFDIAYPSELDVMWNDDELGFVI 175 Query: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 NPEAV+F + AQ ACAAD+ + +D LFWCAG+QGSMYP G V +Q+S+ Sbjct: 176 NPEAVLFGSLPAQAACAADSSTALLGSAIDKLFWCAGAQGSMYPLTGHVQEHVGGVQASV 235 Query: 241 LVSERMAFKLHRQGMIMETIGKNN------AVCNEYPSPILPKERWRYQMVNMYPDSGQC 294 L+SERM FKLHRQG++ +T+G ++ ++C+ + SPILPK R+RYQMVN P + C Sbjct: 236 LLSERMNFKLHRQGLLEDTVGLDDSTSSAKSICHTHYSPILPKSRYRYQMVNPLPTTNAC 295 Query: 295 HPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNC 327 +P GR+ T WE G P ++FGYL+WRKRNC Sbjct: 296 YPLGRATTLWEAGHEYPFKGEDFGYLIWRKRNC 328 >UniRef50_A8QYQ7 TraU protein n=2 Tax=Legionellaceae RepID=A8QYQ7_9GAMM Length = 329 Score = 345 bits (885), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 164/330 (49%), Positives = 225/330 (68%), Gaps = 8/330 (2%) Query: 3 RRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTAN 62 R ++ +LF+F+ P S C G FVNPI D+CW C+FPLS+G+IKV +PDT N Sbjct: 6 RVFFVAILFVFS--YPGWSKQ--CTGHFVNPIRDVCWRCLFPLSIGNIKVVNSSLPDTDN 61 Query: 63 PSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFG-KTAQGTAK 121 S PI +CP+P L R+GL IG+WEP+ALTDVT +P C+VNLG G K ++G Sbjct: 62 ASSPIGVCPSPMGL--RVGLNIGFWEPVALTDVTDTPYCLVNLGGIKLNLGLKQSRGGRH 119 Query: 122 KDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILN 181 AF+HVHWYKYPL WLN+ITS+GC++GGD DIAYL+E+DPTW DS ++ +L+ Sbjct: 120 VVGNGQQRAFFHVHWYKYPLMSWLNLITSMGCMQGGDFDIAYLTELDPTWQDSEMSFVLS 179 Query: 182 PEAVIFANPIAQGACAADAIASAFNM-PLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 PE+V+F NP+A +CAADA++S P+D LFWCAGSQG+ YP G V SP+Q++L Sbjct: 180 PESVLFGNPVAASSCAADALSSTLTKKPIDSLFWCAGSQGTHYPLTGHVHAPISPVQTAL 239 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 L++ERM +K+HR+ ++ ++ + A+C E+ PK R+RY++VN D C+P G S Sbjct: 240 LLTERMNYKMHRELLLSDSSAASGAICKEHHYSATPKSRYRYEIVNQVADGKHCYPGGLS 299 Query: 301 VTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 WE GK P+T +G+L+WRKRNC FL Sbjct: 300 TLAWEFGKIKPHTPDQYGFLVWRKRNCTFL 329 >UniRef50_Q4LC37 TraU protein n=2 Tax=Sodalis glossinidius RepID=Q4LC37_SODGL Length = 256 Score = 343 bits (881), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 175/287 (60%), Positives = 195/287 (67%), Gaps = 60/287 (20%) Query: 18 PAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPLF 77 P A AD+AC+GRFVN ITDICW C+FP+S+GS++V +G VPDT NP PIQ CP PP LF Sbjct: 27 PTAGADAACQGRFVNLITDICWRCLFPISIGSVQVGKGDVPDTGNPGSPIQFCPMPPLLF 86 Query: 78 RRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNGAFYHVHWY 137 +RIGLAIGYWEPMA+TDVTR+P Sbjct: 87 QRIGLAIGYWEPMAMTDVTRTP-------------------------------------- 108 Query: 138 KYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACA 197 GCLE GDMDIAYLSE+DPTW DSSLTTILNPEAVIFANPIAQG CA Sbjct: 109 --------------GCLELGDMDIAYLSELDPTWVDSSLTTILNPEAVIFANPIAQGVCA 154 Query: 198 ADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIM 257 ADAIAS F++PLDVLFWCAGSQGSMYPFNGWVS E SPLQSS+LV+ RMAFKLHRQG I Sbjct: 155 ADAIASGFHLPLDVLFWCAGSQGSMYPFNGWVSKEISPLQSSVLVTARMAFKLHRQGQIW 214 Query: 258 ETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRW 304 ETIGK+ VC ++PSPI+PK RWRYQMV C P RW Sbjct: 215 ETIGKDREVCYKFPSPIMPKARWRYQMV--------CTPTAPVAIRW 253 >UniRef50_A5VGR9 TraU family protein n=18 Tax=Alphaproteobacteria RepID=A5VGR9_SPHWW Length = 340 Score = 306 bits (784), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 160/332 (48%), Positives = 207/332 (62%), Gaps = 14/332 (4%) Query: 7 LLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMP 66 L+ L LFA PA +A C G+FVNPITD+CWSC+FPLS+G +K+ PDT+NP+ P Sbjct: 15 LVTLMLFA--APAQAAGPTCNGKFVNPITDVCWSCLFPLSVGGLKIWPSGRPDTSNPASP 72 Query: 67 IQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFG-----KTAQGTAK 121 + C P P RIG+A+G+WEP L DVT P C NLG A G G + Sbjct: 73 VCACADPLP---RIGIAVGFWEPARLADVTMKPWCFPNLGGIRIAPGFDIGQGYLAGPSM 129 Query: 122 KDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILN 181 + + A +HVHWY YPL YW+ I+T C E DIAY++EIDP W D +LTT++N Sbjct: 130 VGGRSQSTAKWHVHWYVYPLLYWMEILTDFVCFEQASFDIAYMTEIDPLWQDDALTTLIN 189 Query: 182 PEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLL 241 PEA+IFANPIAQ ACA D IA N+PLD LFWCAG QGSMYP NG V +QSS L Sbjct: 190 PEAIIFANPIAQAACAGDCIAGTVNLPLDPLFWCAGCQGSMYPLNGNVPASIGHVQSSRL 249 Query: 242 VSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPD-SGQ--CHPFG 298 R A+K+HR+ + T+G + +C +Y PI+ K+++R+QMVN P SG+ C G Sbjct: 250 AVSRFAYKMHREALAWGTMG-SKGLCKKYLMPIMRKQQYRFQMVNPIPTVSGRFACSAIG 308 Query: 299 RSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 S + G+ P ++ GYL+WRKRNC L Sbjct: 309 ASTMPPDAGRAYPAGGEDMGYLVWRKRNCCVL 340 >UniRef50_C4Z005 Sex pilus assembly n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4Z005_9RICK Length = 361 Score = 278 bits (710), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/344 (42%), Positives = 211/344 (61%), Gaps = 24/344 (6%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVP-- 58 + + L +L++ LF + SA+ C+GRFVNPITDICWSCI P+S+GSI + +G P Sbjct: 22 LTKSLIILIMALFMPF--SVSANITCQGRFVNPITDICWSCILPISIGSINIGKGAAPKK 79 Query: 59 -DTANPSMPIQICPA---PPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLG-FSLPAFG 113 DT NPS PI +C P P G++IG+WEP+ L DVTR+P C+ NLG SL + Sbjct: 80 RDTKNPSSPICMCTKDNIPTP-----GISIGFWEPVRLVDVTRTPYCLTNLGGVSLGSDN 134 Query: 114 K--TAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTW 171 K ++ + D+ + +FYHVH+Y YPL YWL +IT CLE G D+AY+SE D TW Sbjct: 135 KRISSFNRSYADKSYKHDSFYHVHYYAYPLIYWLELITDFACLEKGSFDVAYMSEFDVTW 194 Query: 172 TDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSN 231 D L ++LNPEA++F NPIAQ AC+ D A++ +P+D +FWC G G++YPF+G ++ Sbjct: 195 NDPKLQSLLNPEAILFGNPIAQAACSMDCAAASLKLPIDSMFWCGGCLGNLYPFSGANAD 254 Query: 232 ESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAV----CNEYPSPILPKERWRYQMVNM 287 +QSS L++ R+ K HR G T ++ V C + + + K +++ QMVN Sbjct: 255 HEGGVQSSSLLTLRVLAKQHRLGFADVTSTSSSKVNGPLCRKSKNLKIKKSQYKLQMVNP 314 Query: 288 YPDSG----QCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNC 327 +G C P G + T + + K P ++FGY++WRK+NC Sbjct: 315 KATTGGKDIGCWPVGLTDTLYSSFKEYPYKGQDFGYVIWRKKNC 358 >UniRef50_Q3IUV9 TraU n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IUV9_RHOS4 Length = 328 Score = 278 bits (710), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 151/338 (44%), Positives = 205/338 (60%), Gaps = 18/338 (5%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 MK + + L L G A+ A C +F+NPIT++CW CIFP+S+GSIKV K PDT Sbjct: 1 MKGLFFAMALALGIGASGASFAK--CNAKFLNPITEVCWDCIFPISIGSIKVLN-KRPDT 57 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGF----SLPAFGKTA 116 NPS+P+ +CP PP R+GLAIG WEP LTDV GC VN+GF L + GK++ Sbjct: 58 KNPSLPVCLCPGTPP---RVGLAIGLWEPARLTDVANEAGCFVNMGFKADLGLFSIGKSS 114 Query: 117 QGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSL 176 ++ D+ G+ + H+Y YPL WL + CLE DIAY+SE DP W DS L Sbjct: 115 VTSSDGDQ---TGSKWQAHYYYYPLISWLGTVVDGLCLETTAFDIAYISEFDPLWQDSEL 171 Query: 177 TTILNPEAVIFANPIAQGACAADAI-ASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSP 235 TILNPEAV+FANPIAQ ACAAD + +SA +P+D LFWC G QG MYP G + Sbjct: 172 NTILNPEAVLFANPIAQAACAADCVRSSAGGLPMDSLFWCNGCQGGMYPMQGDSNAHYGG 231 Query: 236 LQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVN-MYPDSGQ- 293 +Q+S V+ +M + HR G+ T G ++A+C +PI+ K ++R+Q+ SG+ Sbjct: 232 IQASETVTAKMLARQHRLGLARRTSG-SSALCTTATAPIIKKSQYRFQVTRPRAAVSGRY 290 Query: 294 -CHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 C P G S ++ + P ++FG+L+WRKRNC L Sbjct: 291 ACGPLGSSTQLVDSMRQFPYKGESFGWLIWRKRNCCAL 328 >UniRef50_C4YVM8 Conjugal DNA transfer protein TraU n=3 Tax=Rickettsieae RepID=C4YVM8_9RICK Length = 331 Score = 272 bits (695), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 133/322 (41%), Positives = 195/322 (60%), Gaps = 7/322 (2%) Query: 7 LLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMP 66 ++++ +F+ + A SA C GRFVNPITD+CW C+FP+++ +K++ + DT + Sbjct: 13 IILIIVFSLNRTAQSAVD-CVGRFVNPITDVCWKCLFPITIAGVKIAGSPMADTPSARNL 71 Query: 67 IQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQ 126 + CP P G+ IG+WEP+ L DVT+SP CMV+LG + G ++Q K D++ Sbjct: 72 LCFCPRPGIAVPVPGIPIGFWEPVRLVDVTKSPMCMVSLGGI--SLGTSSQRGIKDDKE- 128 Query: 127 VNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVI 186 AFYHVHWY YP+ YWL I+ CLE +D+AYL+E DP W D + + ILNPE+++ Sbjct: 129 -GTAFYHVHWYIYPVIYWLEILLDFMCLEMASVDVAYLTEFDPLWGDDAKSAILNPESLL 187 Query: 187 FANPIAQGACAADAIA-SAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSER 245 FAN AQ C AD I+ S + D +FWCAG QGS+YPF G + + +S L+ + Sbjct: 188 FANIAAQSVCIADCISLSTGQLSNDAMFWCAGCQGSIYPFTGTTPYHNGGVGTSTLIVSK 247 Query: 246 MAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWE 305 KLHRQ M+ G +C +YP PI+ K ++R QM P+ C G + W+ Sbjct: 248 FMAKLHRQLMLWGYYG-TEGLCGKYPMPIIQKSQYRLQMTYPIPEVSSCKKIGETEVTWQ 306 Query: 306 TGKNPPNTKKNFGYLMWRKRNC 327 +G+ P ++FGYL+WRKR+C Sbjct: 307 SGREFPIKGEDFGYLIWRKRDC 328 >UniRef50_A8F1T8 Conjugal DNA transfer protein TraU n=17 Tax=Rickettsieae RepID=A8F1T8_RICM5 Length = 326 Score = 270 bits (691), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 129/307 (42%), Positives = 184/307 (59%), Gaps = 6/307 (1%) Query: 25 ACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRIGLAI 84 C GRFVNPITD+CW C+FP+++G +K+ + DT NP + CP P G+ I Sbjct: 25 GCVGRFVNPITDVCWKCLFPITIGGVKIVSSSMADTNNPRQIVCFCPKPSIPMPVPGIPI 84 Query: 85 GYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYW 144 G+WEP+ L DVT+SP CMV+LG G + Q K D + +FYHVHWY YP+ YW Sbjct: 85 GFWEPVRLVDVTKSPMCMVSLGGI--NLGTSMQKGVKDDIE--GSSFYHVHWYIYPVIYW 140 Query: 145 LNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASA 204 L I+ CLE +DI YL+E DP W D S ILNPE+++F + AQ AC AD I+S+ Sbjct: 141 LEILLDFACLEMSQVDITYLTEFDPLWGDDSKAAILNPESLLFGSIAAQSACIADCISSS 200 Query: 205 F-NMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKN 263 N+ D +FWC G QGS+YPF G S+ + + +S L+ + KLHR+ ++ +G + Sbjct: 201 SGNLSNDRVFWCCGCQGSLYPFTGTTSSHNGGVGTSALIVAKFMAKLHRELLLWGYMG-S 259 Query: 264 NAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWR 323 + +C +YP PI+ K ++R QM P+ C G + W+ + P ++FGYL+WR Sbjct: 260 SGLCGKYPMPIIKKSQYRLQMTYPIPEVHSCKKIGETEISWQGAREFPVKGEDFGYLIWR 319 Query: 324 KRNCVFL 330 KR+C Sbjct: 320 KRSCCLF 326 >UniRef50_B2I3Z5 TraU family protein n=14 Tax=Proteobacteria RepID=B2I3Z5_ACIBC Length = 347 Score = 263 bits (673), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 136/344 (39%), Positives = 197/344 (57%), Gaps = 21/344 (6%) Query: 1 MKRRLWLLMLFLFAGHVPAASADS--------ACEGRFVNPITDICWSCIFPLSLGSIKV 52 MK+ +L L +F AA + S C G F NPI+DICWSCIFP+S+G + + Sbjct: 1 MKKFFTILFLLIFTNLSFAADSGSNNNGSKSLRCPGEFANPISDICWSCIFPISMGGMPL 60 Query: 53 SQGKVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAF 112 +G D +NPS C A P ++ +G+ G+WEP+ DVTR+P CMV+LG L Sbjct: 61 WKGGQEDNSNPSQLFCSC-AIPRIY--LGIQTGFWEPVRRVDVTRTPYCMVSLGTELDVG 117 Query: 113 GKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWT 172 + +G + + +FY HWY P+ WL +I C E G DI Y++E+DP W Sbjct: 118 VEAPEGEVRLHDDNNRHSFYQAHWYTDPIMMWLEVIYEHPCTETGYFDIGYMTELDPMWN 177 Query: 173 DSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNE 232 D L+ IL+PEA +F NP+ Q ACA D + ++ + LFWCAG GS+YP NG V Sbjct: 178 DDELSAILSPEAALFTNPLTQAACAGDCVLASAGFGSNGLFWCAGCNGSIYPLNGNVGAH 237 Query: 233 SSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYP--- 289 S +Q+S L+++R+A K+HRQ + T G+ +C YP PI+ K ++YQM +YP Sbjct: 238 VSHIQASSLIAQRLAAKMHRQFLTWGTNGE-AGLCGVYPQPIMDKTAYKYQM--LYPVAQ 294 Query: 290 ----DSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 + C PFGR+ + W GK+ P T ++F Y ++RK+NC Sbjct: 295 TKKINGKCCQPFGRTTSVWGAGKSWPVTGEHFSYELFRKKNCCL 338 >UniRef50_Q1MY35 TraU n=1 Tax=Bermanella marisrubri RepID=Q1MY35_9GAMM Length = 334 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 195/336 (58%), Gaps = 14/336 (4%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 M + + L+ +F G +++ C G+F NP+TDICW C+FP+ +G V+ G+VP Sbjct: 1 MLKNILLISVFTIVGLFSSSAFSVVCPGKFPNPVTDICWKCMFPIFIGPAGVTNGEVPTG 60 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLG------FSLPAF-G 113 P P+ CPAPPP+F R G+ I +WEP + +V RSP C +LG FSL A G Sbjct: 61 EVPP-PVCTCPAPPPVFIRFGVGISFWEPARMAEVVRSPMCSPSLGGTKLGEFSLNATQG 119 Query: 114 KTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWL-NIITSLGCLEGGDMDIAYLSEIDPTWT 172 ++G+ D+ N AFYHVHW+ YPL W+ + IT C+ +D+ +SE+DPTW+ Sbjct: 120 SNSKGSTDVDD---NMAFYHVHWFTYPLLSWVGSAITQGACMSTETLDLTAMSELDPTWS 176 Query: 173 DSSLTTILNPEAVIFANPIA-QGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSN 231 D LT LNPEAV+FANPI+ A AS N LD LFWC+GS G +YP G +S Sbjct: 177 DDELTFFLNPEAVLFANPISIAACAADAVSASVSNFGLDPLFWCSGSAGPVYPLTGQISG 236 Query: 232 ESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDS 291 S + SS L R A+KLHR G+ M+T A+C P PI+ K +++ MV P+ Sbjct: 237 NFSAVDSSALEVHRFAYKLHRAGLAMDT-STYAAMCMPIPQPIIRKRQYKQNMVYPVPNP 295 Query: 292 GQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNC 327 FG++ T W GK P +++ YL+WRKR C Sbjct: 296 AWGTGFGQTSTIWGVGKEFPYRGEDYAYLIWRKRMC 331 >UniRef50_A5KZG2 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZG2_9GAMM Length = 233 Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 108/233 (46%), Positives = 149/233 (63%), Gaps = 4/233 (1%) Query: 102 MVNLGFSLPAFGKTAQGTAKKDE--KQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDM 159 MVN+G L G A+ D K AFY VHWYKYP+ YWL ++ S C+ + Sbjct: 1 MVNMGMQLSNDNSQKIGGAQHDSSAKTSGNAFYQVHWYKYPVIYWLQLMQSAACMATDNF 60 Query: 160 DIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFN--MPLDVLFWCAG 217 D+AYL+E+DP W D ++ ILNPEA++F +PI Q +C +A+A+ +P D LFWC G Sbjct: 61 DVAYLTELDPFWDDDEMSFILNPEAILFGHPITQLSCITEAMATTTGRVLPFDALFWCLG 120 Query: 218 SQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPK 277 SQGS+YP G + + Q L+ ER FK+HRQG++ ET G++ AVC ++P PILPK Sbjct: 121 SQGSVYPLTGNSAYSHTGPQVGTLMLERFNFKMHRQGVVWETRGEDGAVCYQWPEPILPK 180 Query: 278 ERWRYQMVNMYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 R+RYQ+ D+ C+P+G + + WE GK+ P T NFG++ WRKRNCVFL Sbjct: 181 SRYRYQLSAPIGDAAHCYPYGTTSSLWEQGKDNPTTGGNFGFVNWRKRNCVFL 233 >UniRef50_Q0F372 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F372_9PROT Length = 333 Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 135/330 (40%), Positives = 194/330 (58%), Gaps = 10/330 (3%) Query: 6 WLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQG--KVPDTANP 63 +LL+ + H P A++AC GRF++PI DI W +FP+ +G V++ +PDT Sbjct: 3 FLLVAGIVLSHAPGI-ANAACSGRFIDPIADINWKNLFPIRIGGYVVAKAPPSLPDTRRD 61 Query: 64 SMPIQIC--PAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLG-FSL-PAFGKTA-QG 118 S +C P P + RIG+ I +WEP+ L +V R P C +LG L + G T G Sbjct: 62 SGKKLLCHCPLSVPPYVRIGIPIAFWEPLRLGEVVRKPLCFPSLGGLDLGSSIGMTLPHG 121 Query: 119 TAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTT 178 K D+ +FYHVHW PL + LNIIT + CL+ DI Y++E+DP W+D L Sbjct: 122 ARKADKDGGKASFYHVHWLANPLLFILNIITDVVCLQKESFDILYVTELDPLWSDDELAL 181 Query: 179 ILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQS 238 ILNPEA++F NPIAQ ACAAD A+ ++PL+ LFWCAG QG +YPF G V++ + + Sbjct: 182 ILNPEALLFGNPIAQAACAADCAAATADLPLNPLFWCAGCQGGLYPFTGTVTDHVGGVMA 241 Query: 239 SLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMV-NMYPDSGQCHPF 297 SLL+ ER K+HR+ ++ + C YP PI+ K+++RYQ+V + + PF Sbjct: 242 SLLLVERFQAKMHRE-LLADFSSARVGQCQPYPFPIVVKDQYRYQLVLPIRQSTVPSLPF 300 Query: 298 GRSVTRWETGKNPPNTKKNFGYLMWRKRNC 327 GR+ T GK P ++F + WRKR+C Sbjct: 301 GRTETIVSPGKEFPVKGEDFVWQSWRKRDC 330 >UniRef50_Q6MB91 Putative F pilus assembly protein traU n=2 Tax=Parachlamydiaceae RepID=Q6MB91_PARUW Length = 311 Score = 226 bits (577), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 176/302 (58%), Gaps = 9/302 (2%) Query: 31 VNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPM 90 +NP TD+CW C+FPL++ + V+ G PD + + I C PP R+G+ + +WEP+ Sbjct: 1 MNPFTDVCWECVFPLTVSGVSVTPGH-PDLSKSNKRICTCAGVPP---RVGIPLTFWEPL 56 Query: 91 ALTDVTRSPGCMVNLG-FSLPAFGKTAQGTAKK-DEKQVNGAFYHVHWYKYPLTYWLNII 148 L DVTR +V LG S+ + +GT + + YHVHWY +PL LN++ Sbjct: 57 NLVDVTRHAYRLVGLGGVSVGSDSIKNRGTVSVLGDGPAQTSVYHVHWYHFPLLSLLNLL 116 Query: 149 TSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMP 208 T C+E GD+D+ YLSE+DP W D +L I+NPEA +F +P+AQ +C AD ++ N P Sbjct: 117 TDFICVEQGDVDLPYLSELDPLWNDDTLALIVNPEAALFNSPLAQVSCIADCSMASLNHP 176 Query: 209 LDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCN 268 +D LFWCAG +GS+YP G V++ SP+Q+S L+ +R+ KLHR M + C Sbjct: 177 IDELFWCAGCEGSLYPLTGVVAHHLSPIQASYLLVQRLIAKLHR--MFLLKGYDKGEFCE 234 Query: 269 EYPSPILPKERWRYQMVNMYPD-SGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNC 327 PIL K ++ ++ P SG CH G+S W GK+ P ++F YL+W K++C Sbjct: 235 AQMMPILKKTLYKTHLIYPIPQTSGLCHALGKSDLLWGIGKSFPIQGEDFVYLIWSKKHC 294 Query: 328 VF 329 Sbjct: 295 CL 296 >UniRef50_C5F1U6 Trau protein n=2 Tax=Helicobacter pullorum MIT 98-5489 RepID=C5F1U6_9HELI Length = 334 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 121/300 (40%), Positives = 175/300 (58%), Gaps = 15/300 (5%) Query: 37 ICWSCIFPLSLGSIKVSQGKVPD-TANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDV 95 +CW CIFP+S+ I V QG +PD S PI +CPAPPPLF RIG+ IGYWEP D+ Sbjct: 44 MCWECIFPISIAGIPVIQGHMPDPLGTVSTPICLCPAPPPLFIRIGIPIGYWEPSRSIDI 103 Query: 96 TRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLE 155 T+ C +G ++ T +GT K + + ++ F+H H+Y YP+ + I CL Sbjct: 104 TKDAYCFAGMGINM-GISSTQRGT-KGNAESLSRTFFHSHYYIYPVFELIGIFVDTMCLR 161 Query: 156 G-GDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFW 214 G +DIAY++E+DP W D L +++PEA++F NPI AC AD++++ N+ LD LFW Sbjct: 162 GVQGIDIAYMTEVDPLWNDDQLGALISPEALLFGNPITNLACIADSVSAQANISLDPLFW 221 Query: 215 CAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPI 274 C GS G+ YP G +N + ++ S V+ M +KLHR+ +I+ +A+C E+P PI Sbjct: 222 CKGSWGNAYPLTG-NTNTKNYVEDSASVAASMIYKLHRE-LILWNGATASALCGEHPMPI 279 Query: 275 LPKERWRYQMVNMYPDSGQCHP----FGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 K +R Q+ MYP HP G+S W KNP NF YL+++K +C L Sbjct: 280 WLKNAYRMQL--MYPIP---HPTATGIGQSGIIWTPAKNPQMIGDNFNYLLFKKVDCCAL 334 >UniRef50_Q4HP78 Trau protein n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HP78_CAMUP Length = 333 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 125/314 (39%), Positives = 187/314 (59%), Gaps = 16/314 (5%) Query: 22 ADSACE---GRFVNPITDICWSCIFPLSLGSIKVSQGKVPD-TANPSMPIQICPAPPPLF 77 A++ C + +N + +CWSCIFPLS+ I+V+ G +PD + PI ICPAPPPLF Sbjct: 25 AEAVCTPNPAQIINTLGSLCWSCIFPLSVAGIQVAHGPMPDPQGSVGSPICICPAPPPLF 84 Query: 78 RRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNGAFYHVHWY 137 RIG+ IGY+EP + D + P C + LGF +P +GT K D FY H+Y Sbjct: 85 IRIGIPIGYFEPNRMIDSVKDPYCFMGLGFGIPELVGAGKGT-KGDGNDRTRVFYQSHYY 143 Query: 138 KYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACA 197 YP+ L+I+T C+ G +DIAY++E+DP W D LT ++NPEA++F NPI+ +C Sbjct: 144 IYPVIEILSILTDFICMSIGGIDIAYMTEVDPLWQDDELTALINPEALLFGNPISNLSCM 203 Query: 198 ADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIM 257 AD+++S N+ LD LFWC GS G+ YP +G ++ ++ + V+ M +KLHR+ ++ Sbjct: 204 ADSVSSMANVTLDPLFWCKGSWGNAYPLSGNTGSKDY-VEDAASVAAGMIYKLHRELILW 262 Query: 258 ETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTR----WETGKNPPNT 313 E+ G+ +C E+P PI K +R Q+ P HP G S+ + W KN P+ Sbjct: 263 ESAGQ-LGLCGEFPMPIWRKSSYRLQITAPIP-----HPMGMSIGQSGILWSFAKNLPSL 316 Query: 314 KKNFGYLMWRKRNC 327 NF +L+++KR C Sbjct: 317 GDNFSFLLFKKREC 330 >UniRef50_B4RLR4 TraU n=10 Tax=Neisseria RepID=B4RLR4_NEIG2 Length = 372 Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 118/330 (35%), Positives = 180/330 (54%), Gaps = 34/330 (10%) Query: 26 CEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQ-ICPAPPPLFRRIGLAI 84 C+G+ +NPI DICWSC+FP+ +G K++ N S P C P R G+ + Sbjct: 40 CQGKMLNPINDICWSCMFPIKIGG-KINLNMDNQEDNGSSPNNWFCSCTHP--SRSGVTV 96 Query: 85 GYWEPMALTDVTRSPGCMVNLG-FSLP-AFGKTAQGTAKKD------------------- 123 +WEP L +V R+P CMV+LG SL TA+ T K D Sbjct: 97 SFWEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRGRNE 156 Query: 124 EKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPE 183 + + AFY VHWYK P+ +WL + C+E G +DI +++E+DPTW SL P+ Sbjct: 157 QHDQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQAPD 216 Query: 184 AVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVS 243 + +FAN +AQ ACAAD + +A P + L+WCAG G++YP +GW+S S +Q++ L++ Sbjct: 217 SALFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAKLMA 276 Query: 244 ERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQ------CHPF 297 R+ K+HR + T G+ +A+C +P++ K+ Y+M YP + + C P Sbjct: 277 ARIQTKMHRDLVAWRTSGR-DALCGYKLNPVMDKQ--NYKMAMTYPVAARKFRGRCCEPI 333 Query: 298 GRSVTRWETGKNPPNTKKNFGYLMWRKRNC 327 GRS ++GK P F + ++RKR+C Sbjct: 334 GRSTLVRDSGKAFPYKGNQFAFQLFRKRDC 363 >UniRef50_Q2LU05 Conjugal DNA transfer protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU05_SYNAS Length = 339 Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 124/329 (37%), Positives = 186/329 (56%), Gaps = 18/329 (5%) Query: 6 WLLMLFLFAGHVPAASADSACE-GRFVNPITDICWSCIFPLSLGSIKVSQG----KVPDT 60 + ++L LF A A + C G +NP+TD+CW CIFP+S+ I++ G VPD Sbjct: 19 FFVLLILFH----AVGAQAVCRSGIPLNPVTDLCWQCIFPVSIAGIEIIPGPVENNVPDL 74 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGK-TAQGT 119 + MP+ CPAPPPLF RIG+ + +WEP + + P C +LGF L A G G+ Sbjct: 75 SG--MPVCACPAPPPLFIRIGIPVSFWEPARYVETVKDPYCFPSLGFGLTAAGGFLGGGS 132 Query: 120 AKKDEKQVN-GAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTT 178 ++ V+ F H++ YP+ + ++T C+E D+AYL+E+DP W + L Sbjct: 133 QEQGNASVDTSTFAQAHYFIYPVWSIMELLTDFACIEHSGFDVAYLTEVDPLWQNDILAF 192 Query: 179 ILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQS 238 IL PE+++F NPIAQ AC AD++++ + LFWC GS GS YP G V N+ + L + Sbjct: 193 ILEPESILFGNPIAQTACIADSVSTNAGFSMSPLFWCIGSGGSAYPLTGHV-NDDNELMA 251 Query: 239 SLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFG 298 + ++ RM +KL R+G++ +T +C P+PI K WR + D CHPFG Sbjct: 252 NSTIAARMVYKLAREGLVCDTALN---LCACVPTPIWVKHNWRMHVAKPVRDF-MCHPFG 307 Query: 299 RSVTRWETGKNPPNTKKNFGYLMWRKRNC 327 R+ W KNPP NF + ++R+R+C Sbjct: 308 RTGLIWGALKNPPLVGDNFVWQLFRRRSC 336 >UniRef50_A1AKL4 TraU family protein n=3 Tax=Desulfuromonadales RepID=A1AKL4_PELPD Length = 340 Score = 213 bits (542), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 123/330 (37%), Positives = 175/330 (53%), Gaps = 17/330 (5%) Query: 7 LLMLFLFAGHVPAASADS-ACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSM 65 L MLFL A P A S AC G+ +NP+TDICW C+FP+ +GS G P N + Sbjct: 12 LAMLFLLA---PLAYGGSGACRGKMLNPVTDICWQCMFPVKIGSATFGNGDEPAPGNITS 68 Query: 66 PIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSL--PAFGKTAQGTAKKD 123 P+ +CP + +GL+ +WE L + R P C LG + P G + + Sbjct: 69 PVCVCPDSKGILV-LGLSTAFWEHARLIETVREPFCFPALGTGMTNPKPGFYSGENRNAE 127 Query: 124 EKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPE 183 N AF H++ +P L + C E D+AY++E+DP W D SL+ I+NPE Sbjct: 128 YGDSNLAFQQAHYFHFPAWSILKLFMDFPCSENKAFDLAYMTEVDPLWNDDSLSFIINPE 187 Query: 184 AVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVS 243 A++F NP++Q AC AD++A+ P+D LFWC GS GS YP +G + E++PL + ++ Sbjct: 188 ALLFGNPVSQLACVADSVAATVTQPVDPLFWCMGSWGSFYPLSGSMV-ENNPLNVNAGLA 246 Query: 244 ERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSG-QCHPFGRSVT 302 RM FKL R+ ++ +T G N +PIL K +R QM P G C P GR Sbjct: 247 ARMLFKLGRETLLFDT-GINQCASGGVVTPILVKSNYRLQMAR--PVRGNDCIPIGRPSL 303 Query: 303 RWETGKNPP-----NTKKNFGYLMWRKRNC 327 W KNPP N+ NF + + R+R C Sbjct: 304 VWGAAKNPPFGTANNSPDNFLWSLTRRRVC 333 >UniRef50_B0RKU6 TraU family protein n=2 Tax=Yersinia RepID=B0RKU6_YEREN Length = 527 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 109/310 (35%), Positives = 178/310 (57%), Gaps = 17/310 (5%) Query: 22 ADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICP-APPPLFRRI 80 A + C+ F+NPITDI WSCIFP+ + ++V G+ + +N P+ +C A P+ I Sbjct: 226 AHATCKSSFINPITDISWSCIFPMRIAGVQVVGGE-ENPSNSQSPVCVCKGAALPM---I 281 Query: 81 GLAIGYWEPMALTDVTRSPGCMVNLG--FSLPAFGKTAQGTAKKDEKQVNGAFYHVHWYK 138 GL +WEP + D P CM+ LG S P G + G + + + F H++ Sbjct: 282 GLKTSFWEPKRIIDTVSDPYCMMPLGTQLSKPVPGTLSGGYVETNTSK--RVFQQAHYFI 339 Query: 139 YPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAA 198 +P LN+ + CL+ D+A ++EI P W + +L+ I+NPEA++FANP+A AC+A Sbjct: 340 FPAWKILNMFYDIPCLDDEGFDVAMMTEILPQWNNEALSLIINPEALLFANPVATIACSA 399 Query: 199 DAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIME 258 DAIA + MPL+ LFWC GS G++YP +G +++ + ++++ ++ R F + R G++ Sbjct: 400 DAIAGTYGMPLNALFWCMGSWGNVYPLSGSITS-TDFVEANAGIAARSIFTMGRLGLLWN 458 Query: 259 TIGKNNAVCNEYPSPILPKERWRYQMVNMYPD-SGQCHPFGRSVTRWETGKNPPNTKKNF 317 T ++ C +PI K+R++ Q+ M P + C P GR W GK+ P K NF Sbjct: 459 T---SDDGCYRELAPIWKKDRFKLQL--MRPTRANACLPIGREGLLWTGGKHDP-LKDNF 512 Query: 318 GYLMWRKRNC 327 ++M+ K++C Sbjct: 513 MWMMFEKKDC 522 >UniRef50_A2SNI5 Conjugal DNA transfer protein n=3 Tax=Burkholderiales RepID=A2SNI5_METPP Length = 353 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 159/317 (50%), Gaps = 21/317 (6%) Query: 26 CEGRFVNPITDICWSCIFPLSL-GSIKVSQGKVPDTANPS-MPIQICPAPPPLFRRIGLA 83 C+G F N ITD+CWSC FPL L G D A+ + C +PP +G+ Sbjct: 37 CQGSFPNLITDVCWSCTFPLKLFGQAAFDSAGGEDYASSDKTSVCTCKSPP----TVGIP 92 Query: 84 IGYWEPMALTDVTRSPGCM-------VNLGFSLPAFGKTAQGTAKKDEKQVNGAFYHVHW 136 +WE +TDVT +PGC VN+G + A+G + Q +F V+ Sbjct: 93 TSFWELNQMTDVTTTPGCFPMLGGAKVNVGVNADAYGHNGN-NEQGGMAQARESFRQVNL 151 Query: 137 YKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGAC 196 Y P Y + + C++ +DI ++S DPT D L IL P A F + +A GA Sbjct: 152 YINPAMYIMGAVLDNSCMDNRGIDIPWVSFADPTHNDEELANILTPYAFPFGSMVAIGAM 211 Query: 197 AADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMI 256 +ADA+A+ P+ +FW AGS G MYP G S QS+ L + R+ KLH G Sbjct: 212 SADAVAATAGFPIPEIFWAAGSFGPMYPLTGTNQAHLSNEQSARLQTTRVLAKLHAAGTQ 271 Query: 257 METIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQ-----CHPFGRSVTRWETGKNPP 311 G N+A+C+ YP I+ K +++ Q + P + + C P GR+ E+G P Sbjct: 272 WAAAG-NDAMCSYYPQIIMDKRQYKLQRLYPRPQTEKINGKCCDPIGRTTILTESGTEAP 330 Query: 312 -NTKKNFGYLMWRKRNC 327 +T ++FGY ++RKR+C Sbjct: 331 LSTFRDFGYAIFRKRDC 347 >UniRef50_B3CR07 Putative conjugative transfer protein TraU n=1 Tax=Orientia tsutsugamushi str. Ikeda RepID=B3CR07_ORITI Length = 193 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 88/182 (48%), Positives = 115/182 (63%), Gaps = 6/182 (3%) Query: 22 ADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRIG 81 A + C GRFVNPITD+CW C+FP+++ KV +PDT I +CP P G Sbjct: 15 AAAGCVGRFVNPITDVCWKCLFPITIAGFKVVSSSMPDTNPSGRLICLCPKPGIPVPVPG 74 Query: 82 LAIGYWEPMALTDVTRSPGCMVNLG-FSLPAFGKTAQGTAKKDEKQVNGAFYHVHWYKYP 140 + +G+WE + L DVT+SP CMV+LG FS FG AQ KDE + AFYH+HWY YP Sbjct: 75 IPVGFWELVRLVDVTKSPMCMVSLGGFS---FGSAAQ-KGMKDEAE-GSAFYHIHWYVYP 129 Query: 141 LTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADA 200 + YWL I+ CLE +DIAYL+E DP W+D + +TILNPE ++F N A AC AD Sbjct: 130 VIYWLKILLDFICLEMAAVDIAYLTEFDPLWSDDAKSTILNPETLLFQNVAAYQACIADC 189 Query: 201 IA 202 ++ Sbjct: 190 MS 191 >UniRef50_Q19NQ7 TrhU n=9 Tax=Enterobacteriaceae RepID=Q19NQ7_ECOK1 Length = 386 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 104/320 (32%), Positives = 163/320 (50%), Gaps = 17/320 (5%) Query: 17 VPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPL 76 VP A SA G + I +ICWSCIFP+ + I G P+ A PS P C + Sbjct: 67 VPGAMCQSA--GVWQGLIKNICWSCIFPMRIMGI----GAAPEGAAPSRPGCYCTDQNGV 120 Query: 77 FRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDE--KQVNGAFYHV 134 IG + +++P+ + +V +SP C L ++ + G + ++ FY V Sbjct: 121 -PEIGWQLSFFQPVKIVEVVKSPWCSPFLEGTMLQKSQFDIGKSNTNQPMTATEAGFYDV 179 Query: 135 HWYKYPLTYWLNIITSLGCLEGG--DMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIA 192 H +++P+ L ++ C D + Y+SE+DP W LT +LNPEAV+FANPIA Sbjct: 180 HLWEFPIMTMLKLLIIGECTAEPYIDASLTYISEVDPMWESDLLTLVLNPEAVVFANPIA 239 Query: 193 QGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHR 252 CAAD +A ++CAG G++YP G + +++S L+++R+ KLHR Sbjct: 240 SMVCAADCVAVTAGKDNLAAYFCAGCDGNLYPLTGHIYANDDAVRTSSLITQRLLTKLHR 299 Query: 253 QGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQ---CHPFGRSVTRWET--G 307 QGM+M T+G +A+C + P+ ++R M+ P++ CH G SV W T G Sbjct: 300 QGMLMRTMGA-DAMCEKTWEYFTPRSQYRLSMLFPTPEAKGPDCCHRLGDSVHDWSTLKG 358 Query: 308 KNPPNTKKNFGYLMWRKRNC 327 N+ Y++WR +C Sbjct: 359 GRKKIGNDNYVYMLWRYNDC 378 >UniRef50_Q5NX39 Sex pilus assembly and synthesis protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX39_AZOSE Length = 351 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/346 (30%), Positives = 162/346 (46%), Gaps = 22/346 (6%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKV-SQGKVPD 59 M +RL L+ F+ A P S C G+F NP+TDICWSC+FP+ + + V S G+ Sbjct: 1 MIKRLLPLIAFVLALLTPLPSFAQTCPGKFPNPLTDICWSCMFPIRIFNANVLSMGQEDA 60 Query: 60 TANPSMPIQIC--PAPPPLFRRIGLAIGYWEPMALTDVTRSPGC-------MVNLGFSLP 110 S + C +F G+ + +WE +V P C +++ F Sbjct: 61 LTRDSSLLCSCLDKGGSTVF---GVPVEFWEQSRFAEVVNEPYCYPMLGGMQLDISFRGL 117 Query: 111 AFGKTAQGTAKKDEKQV-----NGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLS 165 G T + T D Q +F ++++Y P + + + C+E + D+AY S Sbjct: 118 IGGTTEEITTATDYDQGAIRSGEKSFRNINYYVSPFMFIMQTVMDNDCMEKLNFDLAYTS 177 Query: 166 EIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPF 225 +DP W D L I+ P FA+ AQ ACA D A+A P+ LFWCAG G YP Sbjct: 178 NLDPMWDDPELAGIITPYMYAFADTAAQNACAVDCGAAAVGFPISSLFWCAGCNGGTYPL 237 Query: 226 NGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMV 285 G ++ S Q+ L+++R+ K+H GMI T G + YP ++ K ++ Sbjct: 238 TGDNTSHLSAEQTGRLLTQRLLAKMHASGMIWATHGSDAMCRVGYPMLMMDKRAYKVSRT 297 Query: 286 NMYPD---SGQ-CHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNC 327 P +G+ C P GR E G P K+ GY ++RKR+C Sbjct: 298 FYIPQRKVAGRCCDPLGRMTDLAEIGAEVPVYGKDMGYTIFRKRHC 343 >UniRef50_C4NVV3 TraU n=27 Tax=Gammaproteobacteria RepID=C4NVV3_ECOLX Length = 335 Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 173/335 (51%), Gaps = 11/335 (3%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFV---NPITDICWSCIFPLSLGSIKVSQG-- 55 M +++ +M V + SAD C+ V ITDICWSCIFP+ + + +S G Sbjct: 1 MMQKILRIMAVSAVFWVGSVSADPGCQNAEVIGGKLITDICWSCIFPIKVAGVPISGGGG 60 Query: 56 KVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKT 115 P A S P+ +C + R G+ WEP L + R PGC L F +T Sbjct: 61 SFPSEA-VSNPLCMCEDNLGV-PRPGVTTSMWEPARLVEFQRVPGCSSVLNGVRFPFDRT 118 Query: 116 AQGTAKKDEKQVNG-AFYHVHWYKYPLTYWLNIITSLGCLEGG--DMDIAYLSEIDPTWT 172 QG + +F H H+Y +PL L++ C G D+DI Y+SE+DPTW Sbjct: 119 NQGHHGMGDMDGGDGSFMHYHYYAFPLLVMLDLFIKQTCNADGYMDLDIMYMSELDPTWN 178 Query: 173 DSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNE 232 + L NPEA ANPIA AC ADA++S PL LFWCAGS G++YPF+G + Sbjct: 179 NDELAFFTNPEAAAVANPIAAAACTADAVSSTAGKPLKQLFWCAGSWGTLYPFSGNQNGG 238 Query: 233 SSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSG 292 ++ S L+S R+ LHR+G+ +T+G + A+C SP LPK ++++ +++ P++ Sbjct: 239 KGVIRDSSLLSTRVLAALHRRGLAWKTMG-SEAMCRGVISPTLPKTQYKFTLLHPVPETN 297 Query: 293 QCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNC 327 H G S W + P ++ Y +WR +C Sbjct: 298 SSHVIGESTLTWGLARTIPAIGQDPIYTIWRWNDC 332 >UniRef50_A9AU19 TraU family protein n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AU19_BURM1 Length = 337 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 110/340 (32%), Positives = 175/340 (51%), Gaps = 27/340 (7%) Query: 4 RLW--LLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSL--GSIKVS-QGKVP 58 RLW +++ +G+ A+A + C G F N ITD+C+ CIFP+S+ G I + G Sbjct: 2 RLWASVVLALCLSGN---ANAQALCNGSFPNLITDVCYDCIFPISIMGGFINMGVSGDDY 58 Query: 59 DTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLG-------FSLPA 111 DT P+ +C +G + +WEP + D T PGCM LG ++ Sbjct: 59 DTGASHFPVCVCANN----LAVGTPVSFWEPRYMVDTTTKPGCMPLLGGIDIKTPYNAAE 114 Query: 112 FGKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTW 171 +G A K+ AF V+ Y P+ L ++ + CL+ D+ +LS DPTW Sbjct: 115 YGAENVTNAAISGKR-KAAFMQVNEYVNPIMSALGVVVNNPCLDNRSFDVPFLSWADPTW 173 Query: 172 TDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSN 231 D +L+ +L P A FA + A DAI++ F P+++LFW AG+ G MYP NG V+ Sbjct: 174 NDDALSLMLTPYAYPFAGIPSIAAELPDAISATFGFPMEILFWVAGAWGPMYPLNGNVAI 233 Query: 232 ESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAV--CNEY--PSPILPKERWRYQMVNM 287 ++P Q S L+ R+ KLH G T N+A+ C P ++ K +++ V Sbjct: 234 ANTPEQVSHLMIARLFAKLHAAGAAQATA-GNDALQSCGALGVPQLVMDKRQYKTNRVFP 292 Query: 288 YPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNC 327 +PD+ +C P GR + E G P K++GY+++++++C Sbjct: 293 FPDN-KCTPIGRPLAFQEIGAARPQ-DKDYGYIIFQRKDC 330 >UniRef50_Q8L271 Pilus biogenesis protein n=2 Tax=Enterobacteriaceae RepID=Q8L271_PROVU Length = 358 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 101/306 (33%), Positives = 155/306 (50%), Gaps = 17/306 (5%) Query: 34 ITDICWSCIFPLSLGSIKVS-QGKVPDTANPSMPIQICPAPPPL-FRRIGLAIGYWEPMA 91 TD+CWSCIFP+ + + G VP+ A +C L G+ WEP Sbjct: 54 FTDVCWSCIFPIKVAGATIGPSGSVPNDAATG---SVCACADGLGVYHPGIMSALWEPRR 110 Query: 92 LTDVTRSPGCMVNLGFSLPAFGKTAQ-GT---AKKDEKQVNG-AFYHVHWYKYPLTYWLN 146 ++TR+PGCM +LG + G Q GT + KDE+Q +FY+ H Y PL L+ Sbjct: 111 FIELTRTPGCMSSLGGAKLNLGSELQYGTQTDSAKDERQRAAISFYNAHMYAMPLLRMLD 170 Query: 147 IITSLGCLEG--GDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIAS- 203 + C D DI +EIDPTW +S+L NPE+ AN +AQ AC +A A Sbjct: 171 LYLPGSCNADPYSDFDIISFTEIDPTWNNSALAFFQNPESAAVANIVAQQACTVEAAAQF 230 Query: 204 AFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKN 263 A P L+WCAGS G YP G V +P +SL + ++A + HR+G+ ++G N Sbjct: 231 AGAQPQSALWWCAGSWGGQYPLTGSVRTMDTPRTTSLAATRQLAVE-HRRGLAYRSVG-N 288 Query: 264 NAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWETG--KNPPNTKKNFGYLM 321 + C P +PK++++ M P++ + H G S +W+ G + P ++ Y++ Sbjct: 289 DVACRAKIYPTIPKQQYKMNMFYPTPETKKGHNIGESPYKWQGGSFRYPTGMGQDSVYMI 348 Query: 322 WRKRNC 327 ++ +C Sbjct: 349 FQWTDC 354 >UniRef50_B7XGS0 Putative pilus assembly protein n=2 Tax=Pseudomonas RepID=B7XGS0_PSEPU Length = 350 Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 105/341 (30%), Positives = 163/341 (47%), Gaps = 28/341 (8%) Query: 10 LFLFAG--HVPAASADSACEGRFV---------NPITDICWSCIFPLSLGSIKVSQGKVP 58 L + AG +P +AD+A G + TDICW+C+FP+ + ++++ G P Sbjct: 11 LLMIAGMFSLPGIAADTASSGEVMCEDSGLFGPKLFTDICWACLFPIRVSGVQITPGTAP 70 Query: 59 DTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLG-FSLPAFGKTAQ 117 A M IC + G+ WEP + + R PGC LG +LP K + Sbjct: 71 AKAT-KMVFCICQEGSSSIYKPGIITAMWEPARMVETVRKPGCSPTLGGVTLPLGNKRSY 129 Query: 118 GTAKKDEK----QVNGAFYHVHWYKYPLTYWLNIITSLGCLEGG--DMDIAYLSEIDPTW 171 G ++D Q G+FYH H Y +PL L++ T C G D+DI +EIDPTW Sbjct: 130 GRLRQDNSTQTGQAAGSFYHAHLYAFPLLQILDLYTPTKCNPDGYLDLDIISFTEIDPTW 189 Query: 172 TDSSLTTILNPE-AVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVS 230 + +L +PE A + A A+ +A PL+ L+WC G+ GS+YPF G V+ Sbjct: 190 NNGTLAFFQHPESAAVANPIAIAACAAESALVTARKEPLESLWWCTGTWGSIYPFAG-VT 248 Query: 231 NESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPD 290 +++ L++ R+ + HR+G+ T+G N VC P +PK +Y++ +P Sbjct: 249 VAQDANRTTALLAARVIAQQHRRGLARRTMGDEN-VCKAGIYPTIPKS--QYKVTQFWPK 305 Query: 291 SGQCHP--FGRSVTRWETG--KNPPNTKKNFGYLMWRKRNC 327 S G WE G ++ P T + Y+ WR +C Sbjct: 306 SQNSRAMWLGEPPQTWEGGPSRHVPGTGNDAMYMFWRWTDC 346 >UniRef50_C1SHD7 TraU protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHD7_9BACT Length = 333 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 107/340 (31%), Positives = 170/340 (50%), Gaps = 33/340 (9%) Query: 7 LLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVP--DTANPS 64 L+++FL + A SA + C G ++PIT + W+C P+S+G I + P D A+ S Sbjct: 5 LIIIFLLS----ANSAFALCAGPMLDPITRVRWNCFLPISIGGIPIGTSGNPLADMADRS 60 Query: 65 M----PIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLP--AFGKTAQG 118 M P+ +C P P RIG+ +GY EP+ + + + P C LGF + A+G +G Sbjct: 61 MGTQSPVCLCMDPLP---RIGITLGYREPIRIIESVKDPFCFPTLGFGMSSSAWGSGVKG 117 Query: 119 TAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEG--------GDMDIAYLSEIDPT 170 K K F + H + + + I T L C++ G + IAY+SE D T Sbjct: 118 RNSKPAKD----FTNTHMFIFLPFTMMEIFTDLICMQTDSKYTGVLGGLSIAYMSEFDIT 173 Query: 171 WTDSSLTTILNPEAVIFANPIAQGACAA-DAIASAFNMPLDVLFWCAGSQGSMYPFNGWV 229 +L PE V+FANP+A AC D+IAS + L+WCAG+ S++P + Sbjct: 174 KRSDQAALLLTPEVVLFANPLAIMACQIPDSIASLAEYTIPPLYWCAGNH-SVFPTSNNT 232 Query: 230 SNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYP 289 + S+ ++S + + ++ F +HR + + G +C+ YP PI K ++R Q P Sbjct: 233 MSMSNFTEASEVNASKLIFSMHRTLQLWGSFGA-QGLCSYYPMPIWNKMQYRLQTAMPVP 291 Query: 290 DSGQCHPFGRSVTRWETGKNPPN--TKKNFGYLMWRKRNC 327 D+ C G+ W NPP N +++WRKR+C Sbjct: 292 DN-FCRRLGQPSIVWNRFLNPPGAPNNDNMVFILWRKRDC 330 >UniRef50_Q1NGS7 Conjugal DNA transfer protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGS7_9SPHN Length = 324 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 105/321 (32%), Positives = 160/321 (49%), Gaps = 19/321 (5%) Query: 15 GHVPAASADSACE-GRFVNPITDICWSCIFPLSLGSIKVSQ----GKVPDTANPSMPIQI 69 G PA + S CE G NPIT + W+CIFP+++G ++V K D + S P+ Sbjct: 8 GSTPAHA--SKCEAGTIFNPITKVRWNCIFPITIGGVRVGTFDKLDKELDAQSASKPLCA 65 Query: 70 CPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKK--DEKQV 127 C + G+ + +W P + DV PGCM+ +G L G QG+ D Sbjct: 66 CRKGATFW--FGVKVSFWSPNRMIDVVTEPGCMMAVGADLLPTGGRLQGSQSSIADGTNS 123 Query: 128 NGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIF 187 F +H+Y P+ L++ T L C + D+A ++E+ PTW +L I+ PEA++F Sbjct: 124 QKLFAQMHYYISPVWKMLDMFTDLPCTQDDGFDVAMITEVLPTWQSGTLGAIIQPEAILF 183 Query: 188 ANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMA 247 NP A AC AD+ A+A +D LFWC GS G+ YP G + S +++ ++ R Sbjct: 184 GNPAAGLACMADSAAAAAGKVIDPLFWCMGSWGATYPVAGDIHFGDS-VEAWAGLAARGT 242 Query: 248 FKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYP-DSGQCHPFGRSVTRWET 306 F + R G + TI + C+ PI K R++ Q+ M P G+C GR W + Sbjct: 243 FMMGRLGAL--TISSADG-CSFKAQPIWTKSRYKLQI--MEPVKGGKCVNIGRPGALWSS 297 Query: 307 GKNPPNTKKNFGYLMWRKRNC 327 GK+ P K N ++ + K C Sbjct: 298 GKHAPG-KDNAQFMSFEKVIC 317 >UniRef50_A0L2Z2 TraU family protein n=1 Tax=Shewanella sp. ANA-3 RepID=A0L2Z2_SHESA Length = 359 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 148/290 (51%), Gaps = 19/290 (6%) Query: 23 DSAC--EGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPL-FRR 79 DS C G F N I CWSC P +L VP AN S ++C L Sbjct: 3 DSVCPDAGYFSNLINSFCWSCTLPFNLAGF---SDNVPKGANSS---RLCSCSDALGVPE 56 Query: 80 IGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQV--NGAFYHVHWY 137 +G+++GYW P L +V+ +P C LG +L T +G A + Q +F H ++ Sbjct: 57 LGVSLGYWSPDHLVEVSATPWCSPTLGGTLLQNDMTMRGRASNPDTQSAETVSFLHYNYI 116 Query: 138 KYPLTYWLNIITSLGCLEGG---DMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQG 194 P+ L + C D+DIAY+S +D T+ +S+L+ + P+A+ ANP+ + Sbjct: 117 INPVFKMLGLFLLPECDTSPGYFDLDIAYMSILDVTYENSALSFLFTPDAIPIANPVGRA 176 Query: 195 ACAADAIASAFNMPLDVLFW-CAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQ 253 C AD + +A + + W CAG G +YP G++ ++ ++++ L++ R LHR+ Sbjct: 177 ICVADGMITASSGSANEALWFCAGLDGPLYPLTGFIGADNDFIRNTQLITTRSLAALHRR 236 Query: 254 GMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTR 303 G+ +T GK A+CN SP++PK +++ M MYP S + +P S + Sbjct: 237 GLARKTYGK-EAMCNAEYSPMIPKAQYKISM--MYP-SPEANPAAASAVK 282 >UniRef50_B3SF21 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SF21_TRIAD Length = 152 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 50/107 (46%), Positives = 67/107 (62%) Query: 153 CLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVL 212 C+E +DIAY+SE DP W + L ILNPEA +F NPIAQ AC D I + D+L Sbjct: 46 CMEQMSIDIAYMSEFDPLWGNDKLNVILNPEAALFGNPIAQTACIFDCIKATTGFSSDML 105 Query: 213 FWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMET 259 F CAG GS+YPF G + + +Q+S L+ ER+ +LHR G+ +T Sbjct: 106 FHCAGCNGSLYPFGGSIEHTQGGVQASTLIVERLLARLHRVGLAWDT 152 >UniRef50_B7J844 Conjugal transfer protein TraU, putative n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J844_ACIF2 Length = 416 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 97/397 (24%), Positives = 159/397 (40%), Gaps = 78/397 (19%) Query: 7 LLMLFLFAGHVPAASADSAC--EGRFVNPITDICWSCIFPLSLGSIKVSQGK--VPDTAN 62 L++ F A + C G F I +CWS +FPL + + G VP+ A+ Sbjct: 14 LVLTFAVPALATGAQVATLCPDAGVFNELIGGVCWSALFPLRIAGMTWFGGNSGVPNGAS 73 Query: 63 PSMPIQICPAPPPL-FRRIGLAIGYWEPMALTDVTRSPGCMVNLG-------------FS 108 + + L +G+ IGYW+P L + P C LG ++ Sbjct: 74 SGFMCECGGSWSHLQLPTVGVQIGYWQPTMLMEAVSHPFCSPVLGGVSLQPDSTVGSQWT 133 Query: 109 LPAFGKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEG-GDMDIAYLSEI 167 G G + ++ N F++VH + +PL + + C G M++ +SE+ Sbjct: 134 GSWGGNVGTGVSTGNK---NSTFFNVHLWTFPLITMMQLANIPDCNTGYSGMNLMLMSEV 190 Query: 168 DPTWTDSSLTTILNPEAVIFANPIA-QGACAADAIASAFNMPLDVLFWCAGSQGSMYPFN 226 PTW D L+ + +PE +++ NPI GA A S P+D +W AG G +YP Sbjct: 191 FPTWNDDLLSFLASPEELLYDNPIGLLGATEECAQESLGAQPIDDEYWTAGCWGLLYPMV 250 Query: 227 GWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMV- 285 G + P+Q+S + RM R G + T+G N+ +C + +LPK ++R+Q++ Sbjct: 251 GSNLGGNDPIQASNIDVARMIAMGFRLGFLERTMG-NSTLCGPRRTYVLPKAQYRFQILF 309 Query: 286 -----NMYPD-----------------------------------------------SGQ 293 N P+ SG+ Sbjct: 310 PNDETNQEPNASVTAPNVSAQPSGGSMPPANYVTPAASNQGTLPQNGGVNIQAPPTQSGE 369 Query: 294 C-HPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 C H G++ +W P T N+ YL+W+ NC Sbjct: 370 CTHWMGQTPFQWGEWDTQPATGGNYVYLVWQWTNCCL 406 >UniRef50_Q2G6B7 Putative uncharacterized protein n=4 Tax=Sphingomonadales RepID=Q2G6B7_NOVAD Length = 371 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 53/121 (43%), Positives = 72/121 (59%), Gaps = 15/121 (12%) Query: 26 CEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRIGLAIG 85 C G+FVNPITDICWSC+FP+S+G +K+ PD +NP++P+ +C P G+A+G Sbjct: 37 CTGKFVNPITDICWSCLFPISIGGLKIWPSSRPDPSNPALPVCLCGLRP------GIAMG 90 Query: 86 YWEPMALTDVTRSPGCMVNL-------GFSLPAFGKTAQGTAKKDEKQVNGAFYHVHWYK 138 +WEP+ L DV+ P C VNL GF + F A +A Q N +HVHWY Sbjct: 91 FWEPVRLADVSMKPWCFVNLGGMKLDPGFDI-GFKSMAGPSAVGGATQYNSQ-WHVHWYA 148 Query: 139 Y 139 Y Sbjct: 149 Y 149 >UniRef50_B7LWZ0 Protein traU n=1 Tax=Escherichia coli 55989 RepID=B7LWZ0_ECO55 Length = 71 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/69 (84%), Positives = 59/69 (85%), Gaps = 4/69 (5%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGK---- 56 MKRRLWLLMLFL AGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQG Sbjct: 1 MKRRLWLLMLFLLAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGMGAEF 60 Query: 57 VPDTANPSM 65 VP PS+ Sbjct: 61 VPSCTYPSV 69 >UniRef50_C0QUV2 Putative TraU n=1 Tax=Persephonella marina EX-H1 RepID=C0QUV2_PERMH Length = 324 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 126/281 (44%), Gaps = 43/281 (15%) Query: 79 RIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQ--GTAKKDEKQV--NGAFYHV 134 ++G+ + EP+A + N + FG T KKD + GA + Sbjct: 48 KVGVKLQLAEPIAFIETP-------NKAWDFICFGSTRDKFSVQKKDGTNLGKKGAKTNA 100 Query: 135 HWYKYPLTYWLNI-ITSLGCLEGGDMDI--AYLSEIDPTWTDSSLTTILNPEAVIFANPI 191 H+ KYP+ LNI +L + + DI LSEI+P D L I P ++FANPI Sbjct: 101 HYIKYPVFGVLNITFDNLCTMHDLEFDIIPTGLSEINPLLWDDELAMIAQPWKLLFANPI 160 Query: 192 AQGACAADAIASAFNMPLDV---------LFWCAGSQGSMYPFNGWVSNESSPLQSSL-- 240 AQ C AD ++S+ P +V LF+CAG G++ P + S ++S+L Sbjct: 161 AQVLCLADCVSSSVVFPSNVDTFETVRNGLFYCAGCWGAIQPNTTTTRGKDSVVESALTA 220 Query: 241 -----LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSP----ILPK-----ERWRYQMVN 286 L+ E + K++++ + +G + + +P P PK + +Y + Sbjct: 221 VKLIDLLHESLQLKVYKE---VSGLGWASNFSSGFPIPSDVACQPKFFPVIVKSQYWLNL 277 Query: 287 MYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNC 327 YP + P G +W K P+ ++N + +WR RNC Sbjct: 278 SYPVAWDAIPIGDFPPKWSWFKKYPSKEENI-WTIWRIRNC 317 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P18471 Protein traU n=44 Tax=root RepID=TRAU_ECOLI 508 e-142 UniRef50_B6ICG0 TraU protein n=11 Tax=Gammaproteobacteria RepID=... 452 e-125 UniRef50_Q5ZTS6 TraU n=3 Tax=Legionella RepID=Q5ZTS6_LEGPH 449 e-125 UniRef50_D0Z581 IncF plasmid conjugative transfer pilus assembly... 449 e-125 UniRef50_A9L6J8 TraU family protein n=14 Tax=Gammaproteobacteria... 447 e-124 UniRef50_C4YVM8 Conjugal DNA transfer protein TraU n=3 Tax=Ricke... 426 e-118 UniRef50_A5VGR9 TraU family protein n=18 Tax=Alphaproteobacteria... 426 e-118 UniRef50_A8F1T8 Conjugal DNA transfer protein TraU n=17 Tax=Rick... 422 e-117 UniRef50_B2I3Z5 TraU family protein n=14 Tax=Proteobacteria RepI... 421 e-116 UniRef50_A8QYQ7 TraU protein n=2 Tax=Legionellaceae RepID=A8QYQ7... 415 e-114 UniRef50_C4Z005 Sex pilus assembly n=1 Tax=Rickettsia endosymbio... 411 e-113 UniRef50_Q3IUV9 TraU n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID... 390 e-107 UniRef50_Q1MY35 TraU n=1 Tax=Bermanella marisrubri RepID=Q1MY35_... 381 e-104 UniRef50_Q0F372 Putative uncharacterized protein n=1 Tax=Maripro... 375 e-102 UniRef50_B4RLR4 TraU n=10 Tax=Neisseria RepID=B4RLR4_NEIG2 371 e-101 UniRef50_Q5NX39 Sex pilus assembly and synthesis protein n=1 Tax... 370 e-101 UniRef50_B0RKU6 TraU family protein n=2 Tax=Yersinia RepID=B0RKU... 368 e-100 UniRef50_A1AKL4 TraU family protein n=3 Tax=Desulfuromonadales R... 368 e-100 UniRef50_Q4HP78 Trau protein n=1 Tax=Campylobacter upsaliensis R... 359 1e-97 UniRef50_Q2LU05 Conjugal DNA transfer protein n=1 Tax=Syntrophus... 358 2e-97 UniRef50_Q6MB91 Putative F pilus assembly protein traU n=2 Tax=P... 357 3e-97 UniRef50_C5F1U6 Trau protein n=2 Tax=Helicobacter pullorum MIT 9... 357 3e-97 UniRef50_A2SNI5 Conjugal DNA transfer protein n=3 Tax=Burkholder... 344 3e-93 UniRef50_C4NVV3 TraU n=27 Tax=Gammaproteobacteria RepID=C4NVV3_E... 338 2e-91 UniRef50_Q19NQ7 TrhU n=9 Tax=Enterobacteriaceae RepID=Q19NQ7_ECOK1 336 5e-91 UniRef50_Q8L271 Pilus biogenesis protein n=2 Tax=Enterobacteriac... 321 2e-86 UniRef50_C1SHD7 TraU protein n=1 Tax=Denitrovibrio acetiphilus D... 318 2e-85 UniRef50_A9AU19 TraU family protein n=1 Tax=Burkholderia multivo... 316 5e-85 UniRef50_A5KZG2 Putative uncharacterized protein n=1 Tax=Vibrion... 306 9e-82 UniRef50_Q1NGS7 Conjugal DNA transfer protein n=1 Tax=Sphingomon... 305 1e-81 UniRef50_B7XGS0 Putative pilus assembly protein n=2 Tax=Pseudomo... 304 3e-81 UniRef50_Q4LC37 TraU protein n=2 Tax=Sodalis glossinidius RepID=... 298 2e-79 UniRef50_A0L2Z2 TraU family protein n=1 Tax=Shewanella sp. ANA-3... 291 2e-77 UniRef50_B7J844 Conjugal transfer protein TraU, putative n=1 Tax... 281 3e-74 UniRef50_B3CR07 Putative conjugative transfer protein TraU n=1 T... 242 2e-62 UniRef50_C0QUV2 Putative TraU n=1 Tax=Persephonella marina EX-H1... 214 4e-54 UniRef50_B3SF21 Putative uncharacterized protein (Fragment) n=1 ... 164 5e-39 UniRef50_Q2G6B7 Putative uncharacterized protein n=4 Tax=Sphingo... 152 2e-35 UniRef50_B7LWZ0 Protein traU n=1 Tax=Escherichia coli 55989 RepI... 79 2e-13 Sequences not found previously or not previously below threshold: UniRef50_A2UW00 Putative uncharacterized protein n=1 Tax=Shewane... 49 2e-04 UniRef50_A1TQT3 Putative uncharacterized protein n=2 Tax=Comamon... 42 0.023 UniRef50_Q3JDC6 Putative uncharacterized protein n=2 Tax=Nitroso... 42 0.045 UniRef50_C4X2G1 Putative uncharacterized protein n=11 Tax=Proteo... 41 0.048 UniRef50_Q5P8L2 Putative uncharacterized protein n=1 Tax=Aromato... 41 0.077 UniRef50_A4A4E6 Secreted protein containing DUF1527 n=1 Tax=Cong... 40 0.096 >UniRef50_P18471 Protein traU n=44 Tax=root RepID=TRAU_ECOLI Length = 330 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 330/330 (100%), Positives = 330/330 (100%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT Sbjct: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA 120 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA Sbjct: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA 120 Query: 121 KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL 180 KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL Sbjct: 121 KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL 180 Query: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL Sbjct: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS Sbjct: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 Query: 301 VTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 VTRWETGKNPPNTKKNFGYLMWRKRNCVFL Sbjct: 301 VTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 >UniRef50_B6ICG0 TraU protein n=11 Tax=Gammaproteobacteria RepID=B6ICG0_ECOSE Length = 332 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 210/324 (64%), Positives = 254/324 (78%), Gaps = 1/324 (0%) Query: 7 LLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMP 66 L+ L L AG+V A D C+G FVNPI+DICW CIFP+S+G + V G PDT NPSMP Sbjct: 10 LIALGLCAGNVLAEDKDKMCDGNFVNPISDICWECIFPMSIGDVSVFDGDAPDTDNPSMP 69 Query: 67 IQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQ 126 +QICP P + RIG+AIGYWEP ALTDVTRSP CMVNLG GK G A ++++ Sbjct: 70 LQICPLVP-IGYRIGMAIGYWEPFALTDVTRSPYCMVNLGGFNIPVGKVGAGNAGQEDRP 128 Query: 127 VNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVI 186 V G FYHVHWYKYPLTYWLNII S+ CL+ GD+DI YLSE+DPTW D +L+ IL+PEA++ Sbjct: 129 VAGGFYHVHWYKYPLTYWLNIIMSIACLQRGDLDIGYLSELDPTWDDDALSLILSPEALV 188 Query: 187 FANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERM 246 ANPIAQGACAADAI + P++ LFWCAGS GS+YPF G++S+E SP QSS+L+SERM Sbjct: 189 VANPIAQGACAADAIKTVKGKPINALFWCAGSHGSLYPFTGFISDEFSPQQSSVLLSERM 248 Query: 247 AFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWET 306 AFKLHRQGMI+ +IG++ VC EY SPI+PK+R+RYQMVNM+PD+ CHPFGR+V WE Sbjct: 249 AFKLHRQGMILNSIGEDQKVCKEYYSPIMPKDRFRYQMVNMHPDTKACHPFGRTVMAWEA 308 Query: 307 GKNPPNTKKNFGYLMWRKRNCVFL 330 G PNTKKN+GYL+WRKRNCVFL Sbjct: 309 GHASPNTKKNYGYLIWRKRNCVFL 332 >UniRef50_Q5ZTS6 TraU n=3 Tax=Legionella RepID=Q5ZTS6_LEGPH Length = 331 Score = 449 bits (1156), Expect = e-125, Method: Composition-based stats. Identities = 168/337 (49%), Positives = 220/337 (65%), Gaps = 14/337 (4%) Query: 2 KRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIK-VSQGKVPDT 60 + ++L+ FL +G A S C GRFVNPITD+CWSC+FP SLG VS +PDT Sbjct: 1 MKAFFILIAFLASGLTQAGS----CHGRFVNPITDVCWSCLFPFSLGQANLVSSNHLPDT 56 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKT-AQGT 119 NP +P+ CP P R+GL +GYWEP+ L DVTR+P C+VNLG FGK +G Sbjct: 57 KNPKLPVCECPGNP--IPRLGLTMGYWEPVNLVDVTRTPFCLVNLGGISLNFGKYYRKGA 114 Query: 120 AKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTI 179 + D N +FYHVHWYK+PL YWLN++T C+E GD DIAY SE+D W D L + Sbjct: 115 VETDSNLSNQSFYHVHWYKFPLMYWLNVLTDGICVEKGDFDIAYPSELDVMWNDDELGFV 174 Query: 180 LNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSS 239 +NPEAV+F + AQ ACAAD+ + +D LFWCAG+QGSMYP G V +Q+S Sbjct: 175 INPEAVLFGSLPAQAACAADSSTALLGSAIDKLFWCAGAQGSMYPLTGHVQEHVGGVQAS 234 Query: 240 LLVSERMAFKLHRQGMIMETIGKNN------AVCNEYPSPILPKERWRYQMVNMYPDSGQ 293 +L+SERM FKLHRQG++ +T+G ++ ++C+ + SPILPK R+RYQMVN P + Sbjct: 235 VLLSERMNFKLHRQGLLEDTVGLDDSTSSAKSICHTHYSPILPKSRYRYQMVNPLPTTNA 294 Query: 294 CHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 C+P GR+ T WE G P ++FGYL+WRKRNC Sbjct: 295 CYPLGRATTLWEAGHEYPFKGEDFGYLIWRKRNCCAF 331 >UniRef50_D0Z581 IncF plasmid conjugative transfer pilus assembly protein TraU n=3 Tax=Gammaproteobacteria RepID=D0Z581_LISDA Length = 346 Score = 449 bits (1155), Expect = e-125, Method: Composition-based stats. Identities = 171/334 (51%), Positives = 228/334 (68%), Gaps = 5/334 (1%) Query: 2 KRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTA 61 K LW+L L A+++ AC RF+NPITDICW CIFP++LGS+ + + PDT Sbjct: 13 KPLLWVLGFSLLMASNAASASGPACRARFMNPITDICWECIFPITLGSVPLIPSRHPDTP 72 Query: 62 NPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA- 120 NPS+PI CP PPP+F ++GL IGYWEP A+TDVTR P CMVNLGFSL G Sbjct: 73 NPSLPISFCPKPPPIFMQVGLNIGYWEPYAITDVTRVPFCMVNLGFSLGGGMSQQIGGQN 132 Query: 121 --KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTT 178 KK +GAFY HWYKYPL YWL I+ S C+ + D+ YL+E+DP W D L+ Sbjct: 133 SYKKPGDSSSGAFYQAHWYKYPLIYWLQILQSSACMAMDNFDVGYLTELDPFWDDDELSF 192 Query: 179 ILNPEAVIFANPIAQGACAADAIASAFNM--PLDVLFWCAGSQGSMYPFNGWVSNESSPL 236 ILNPEA++F NPIAQ AC A+A+ ++ + P+D LFWC GSQGS YP G +P+ Sbjct: 193 ILNPEAILFGNPIAQLACVAEAVKTSTSFFLPIDALFWCMGSQGSAYPLTGNTGYRDTPM 252 Query: 237 QSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHP 296 QS++L++ER+ +KLHRQG++ E++G + AVC ++P PILPK R+RYQ+ N+ P+ C+P Sbjct: 253 QSAVLMAERLNYKLHRQGIVWESLGVDGAVCVQHPMPILPKSRYRYQLSNVIPNPFNCYP 312 Query: 297 FGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 +G + WE+G + P T NFG++ WRKRNCVFL Sbjct: 313 YGTTTAIWESGHDNPVTGDNFGFVQWRKRNCVFL 346 >UniRef50_A9L6J8 TraU family protein n=14 Tax=Gammaproteobacteria RepID=A9L6J8_SHEB9 Length = 337 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 165/334 (49%), Positives = 225/334 (67%), Gaps = 5/334 (1%) Query: 2 KRRLWLLMLFLFAGHVPA-ASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 + WL+ L L G +P+ A+A +AC G FVNP+TDICWSCIFP+++GS+ + G +PDT Sbjct: 4 IKLAWLVALSLLMGLIPSQANAQAACTGTFVNPMTDICWSCIFPMTIGSVPIIPGSLPDT 63 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGT- 119 NP PI CP PPP+F +IGL IGYWEP L DVTR P CMVN+G L G Sbjct: 64 RNPVSPISFCPKPPPIFMQIGLNIGYWEPDTLVDVTRVPYCMVNMGMKLDMSNSPQIGGR 123 Query: 120 -AKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTT 178 +D +GAFYH HWYKYP+ YWL I+ S C+ + DIAYL+EIDP W D L+ Sbjct: 124 VTSRDNDASDGAFYHGHWYKYPVIYWLQIMQSAACMATDNFDIAYLTEIDPLWDDDELSF 183 Query: 179 ILNPEAVIFANPIAQGACAADAIASAFN--MPLDVLFWCAGSQGSMYPFNGWVSNESSPL 236 ILNPEA++F N ++Q ACA +A+A++ N +P D LFWC GSQGS YP G + +P+ Sbjct: 184 ILNPEAILFGNLVSQLACATEAVATSTNSILPFDFLFWCMGSQGSAYPLTGTTNYRDTPI 243 Query: 237 QSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHP 296 Q+ L+ ER+ +KLHRQG++ E+ G++ A+C + P P++PK R+RYQM N PD+ HP Sbjct: 244 QAGTLILERLNYKLHRQGIVWESHGEDGAICYQTPMPLMPKSRYRYQMTNTIPDALWAHP 303 Query: 297 FGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 + + WE+G + P + NFG++ ++KRNCVFL Sbjct: 304 YTTTTVIWESGHDNPVSGDNFGFINFKKRNCVFL 337 >UniRef50_C4YVM8 Conjugal DNA transfer protein TraU n=3 Tax=Rickettsieae RepID=C4YVM8_9RICK Length = 331 Score = 426 bits (1096), Expect = e-118, Method: Composition-based stats. Identities = 129/324 (39%), Positives = 188/324 (58%), Gaps = 7/324 (2%) Query: 7 LLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMP 66 ++++ +F+ + A SA C GRFVNPITD+CW C+FP+++ +K++ + DT + Sbjct: 13 IILIIVFSLNRTAQSAVD-CVGRFVNPITDVCWKCLFPITIAGVKIAGSPMADTPSARNL 71 Query: 67 IQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQ 126 + CP P G+ IG+WEP+ L DVT+SP CMV+LG + + Sbjct: 72 LCFCPRPGIAVPVPGIPIGFWEPVRLVDVTKSPMCMVSLGGISLGTSSQRGIK----DDK 127 Query: 127 VNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVI 186 AFYHVHWY YP+ YWL I+ CLE +D+AYL+E DP W D + + ILNPE+++ Sbjct: 128 EGTAFYHVHWYIYPVIYWLEILLDFMCLEMASVDVAYLTEFDPLWGDDAKSAILNPESLL 187 Query: 187 FANPIAQGACAADAIA-SAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSER 245 FAN AQ C AD I+ S + D +FWCAG QGS+YPF G + + +S L+ + Sbjct: 188 FANIAAQSVCIADCISLSTGQLSNDAMFWCAGCQGSIYPFTGTTPYHNGGVGTSTLIVSK 247 Query: 246 MAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWE 305 KLHRQ M+ G +C +YP PI+ K ++R QM P+ C G + W+ Sbjct: 248 FMAKLHRQLMLWGYYGT-EGLCGKYPMPIIQKSQYRLQMTYPIPEVSSCKKIGETEVTWQ 306 Query: 306 TGKNPPNTKKNFGYLMWRKRNCVF 329 +G+ P ++FGYL+WRKR+C Sbjct: 307 SGREFPIKGEDFGYLIWRKRDCCL 330 >UniRef50_A5VGR9 TraU family protein n=18 Tax=Alphaproteobacteria RepID=A5VGR9_SPHWW Length = 340 Score = 426 bits (1095), Expect = e-118, Method: Composition-based stats. Identities = 155/331 (46%), Positives = 202/331 (61%), Gaps = 12/331 (3%) Query: 8 LMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPI 67 L++ L PA +A C G+FVNPITD+CWSC+FPLS+G +K+ PDT+NP+ P+ Sbjct: 14 LLVTLMLFAAPAQAAGPTCNGKFVNPITDVCWSCLFPLSVGGLKIWPSGRPDTSNPASPV 73 Query: 68 QICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFG-----KTAQGTAKK 122 C P P RIG+A+G+WEP L DVT P C NLG A G G + Sbjct: 74 CACADPLP---RIGIAVGFWEPARLADVTMKPWCFPNLGGIRIAPGFDIGQGYLAGPSMV 130 Query: 123 DEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNP 182 + + A +HVHWY YPL YW+ I+T C E DIAY++EIDP W D +LTT++NP Sbjct: 131 GGRSQSTAKWHVHWYVYPLLYWMEILTDFVCFEQASFDIAYMTEIDPLWQDDALTTLINP 190 Query: 183 EAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLV 242 EA+IFANPIAQ ACA D IA N+PLD LFWCAG QGSMYP NG V +QSS L Sbjct: 191 EAIIFANPIAQAACAGDCIAGTVNLPLDPLFWCAGCQGSMYPLNGNVPASIGHVQSSRLA 250 Query: 243 SERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQ---CHPFGR 299 R A+K+HR+ + T+G + +C +Y PI+ K+++R+QMVN P C G Sbjct: 251 VSRFAYKMHREALAWGTMG-SKGLCKKYLMPIMRKQQYRFQMVNPIPTVSGRFACSAIGA 309 Query: 300 SVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 S + G+ P ++ GYL+WRKRNC L Sbjct: 310 STMPPDAGRAYPAGGEDMGYLVWRKRNCCVL 340 >UniRef50_A8F1T8 Conjugal DNA transfer protein TraU n=17 Tax=Rickettsieae RepID=A8F1T8_RICM5 Length = 326 Score = 422 bits (1086), Expect = e-117, Method: Composition-based stats. Identities = 128/307 (41%), Positives = 183/307 (59%), Gaps = 6/307 (1%) Query: 25 ACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRIGLAI 84 C GRFVNPITD+CW C+FP+++G +K+ + DT NP + CP P G+ I Sbjct: 25 GCVGRFVNPITDVCWKCLFPITIGGVKIVSSSMADTNNPRQIVCFCPKPSIPMPVPGIPI 84 Query: 85 GYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYW 144 G+WEP+ L DVT+SP CMV+LG G + Q K D + +FYHVHWY YP+ YW Sbjct: 85 GFWEPVRLVDVTKSPMCMVSLGGI--NLGTSMQKGVKDDIE--GSSFYHVHWYIYPVIYW 140 Query: 145 LNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASA 204 L I+ CLE +DI YL+E DP W D S ILNPE+++F + AQ AC AD I+S+ Sbjct: 141 LEILLDFACLEMSQVDITYLTEFDPLWGDDSKAAILNPESLLFGSIAAQSACIADCISSS 200 Query: 205 FN-MPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKN 263 + D +FWC G QGS+YPF G S+ + + +S L+ + KLHR+ ++ +G + Sbjct: 201 SGNLSNDRVFWCCGCQGSLYPFTGTTSSHNGGVGTSALIVAKFMAKLHRELLLWGYMG-S 259 Query: 264 NAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWR 323 + +C +YP PI+ K ++R QM P+ C G + W+ + P ++FGYL+WR Sbjct: 260 SGLCGKYPMPIIKKSQYRLQMTYPIPEVHSCKKIGETEISWQGAREFPVKGEDFGYLIWR 319 Query: 324 KRNCVFL 330 KR+C Sbjct: 320 KRSCCLF 326 >UniRef50_B2I3Z5 TraU family protein n=14 Tax=Proteobacteria RepID=B2I3Z5_ACIBC Length = 347 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 133/342 (38%), Positives = 193/342 (56%), Gaps = 17/342 (4%) Query: 1 MKRRLWLLMLFLFAGHVPAASADS--------ACEGRFVNPITDICWSCIFPLSLGSIKV 52 MK+ +L L +F AA + S C G F NPI+DICWSCIFP+S+G + + Sbjct: 1 MKKFFTILFLLIFTNLSFAADSGSNNNGSKSLRCPGEFANPISDICWSCIFPISMGGMPL 60 Query: 53 SQGKVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAF 112 +G D +NPS C P +G+ G+WEP+ DVTR+P CMV+LG L Sbjct: 61 WKGGQEDNSNPSQLFCSCAIP---RIYLGIQTGFWEPVRRVDVTRTPYCMVSLGTELDVG 117 Query: 113 GKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWT 172 + +G + + +FY HWY P+ WL +I C E G DI Y++E+DP W Sbjct: 118 VEAPEGEVRLHDDNNRHSFYQAHWYTDPIMMWLEVIYEHPCTETGYFDIGYMTELDPMWN 177 Query: 173 DSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNE 232 D L+ IL+PEA +F NP+ Q ACA D + ++ + LFWCAG GS+YP NG V Sbjct: 178 DDELSAILSPEAALFTNPLTQAACAGDCVLASAGFGSNGLFWCAGCNGSIYPLNGNVGAH 237 Query: 233 SSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSG 292 S +Q+S L+++R+A K+HRQ + T G+ +C YP PI+ K ++YQM+ + Sbjct: 238 VSHIQASSLIAQRLAAKMHRQFLTWGTNGEA-GLCGVYPQPIMDKTAYKYQMLYPVAQTK 296 Query: 293 Q-----CHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 + C PFGR+ + W GK+ P T ++F Y ++RK+NC Sbjct: 297 KINGKCCQPFGRTTSVWGAGKSWPVTGEHFSYELFRKKNCCL 338 >UniRef50_A8QYQ7 TraU protein n=2 Tax=Legionellaceae RepID=A8QYQ7_9GAMM Length = 329 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 164/330 (49%), Positives = 225/330 (68%), Gaps = 8/330 (2%) Query: 3 RRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTAN 62 R ++ +LF+F+ P S C G FVNPI D+CW C+FPLS+G+IKV +PDT N Sbjct: 6 RVFFVAILFVFS--YPGWSKQ--CTGHFVNPIRDVCWRCLFPLSIGNIKVVNSSLPDTDN 61 Query: 63 PSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFG-KTAQGTAK 121 S PI +CP+P L R+GL IG+WEP+ALTDVT +P C+VNLG G K ++G Sbjct: 62 ASSPIGVCPSPMGL--RVGLNIGFWEPVALTDVTDTPYCLVNLGGIKLNLGLKQSRGGRH 119 Query: 122 KDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILN 181 AF+HVHWYKYPL WLN+ITS+GC++GGD DIAYL+E+DPTW DS ++ +L+ Sbjct: 120 VVGNGQQRAFFHVHWYKYPLMSWLNLITSMGCMQGGDFDIAYLTELDPTWQDSEMSFVLS 179 Query: 182 PEAVIFANPIAQGACAADAIASA-FNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 PE+V+F NP+A +CAADA++S P+D LFWCAGSQG+ YP G V SP+Q++L Sbjct: 180 PESVLFGNPVAASSCAADALSSTLTKKPIDSLFWCAGSQGTHYPLTGHVHAPISPVQTAL 239 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 L++ERM +K+HR+ ++ ++ + A+C E+ PK R+RY++VN D C+P G S Sbjct: 240 LLTERMNYKMHRELLLSDSSAASGAICKEHHYSATPKSRYRYEIVNQVADGKHCYPGGLS 299 Query: 301 VTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 WE GK P+T +G+L+WRKRNC FL Sbjct: 300 TLAWEFGKIKPHTPDQYGFLVWRKRNCTFL 329 >UniRef50_C4Z005 Sex pilus assembly n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4Z005_9RICK Length = 361 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 139/342 (40%), Positives = 205/342 (59%), Gaps = 18/342 (5%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVP-- 58 + + L +L++ LF + SA+ C+GRFVNPITDICWSCI P+S+GSI + +G P Sbjct: 22 LTKSLIILIMALFMPF--SVSANITCQGRFVNPITDICWSCILPISIGSINIGKGAAPKK 79 Query: 59 -DTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGK--- 114 DT NPS PI +C G++IG+WEP+ L DVTR+P C+ NLG Sbjct: 80 RDTKNPSSPICMCTKDN--IPTPGISIGFWEPVRLVDVTRTPYCLTNLGGVSLGSDNKRI 137 Query: 115 TAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDS 174 ++ + D+ + +FYHVH+Y YPL YWL +IT CLE G D+AY+SE D TW D Sbjct: 138 SSFNRSYADKSYKHDSFYHVHYYAYPLIYWLELITDFACLEKGSFDVAYMSEFDVTWNDP 197 Query: 175 SLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESS 234 L ++LNPEA++F NPIAQ AC+ D A++ +P+D +FWC G G++YPF+G ++ Sbjct: 198 KLQSLLNPEAILFGNPIAQAACSMDCAAASLKLPIDSMFWCGGCLGNLYPFSGANADHEG 257 Query: 235 PLQSSLLVSERMAFKLHRQGMIMETIGKNNA----VCNEYPSPILPKERWRYQMVNMYPD 290 +QSS L++ R+ K HR G T ++ +C + + + K +++ QMVN Sbjct: 258 GVQSSSLLTLRVLAKQHRLGFADVTSTSSSKVNGPLCRKSKNLKIKKSQYKLQMVNPKAT 317 Query: 291 SG----QCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCV 328 +G C P G + T + + K P ++FGY++WRK+NC Sbjct: 318 TGGKDIGCWPVGLTDTLYSSFKEYPYKGQDFGYVIWRKKNCC 359 >UniRef50_Q3IUV9 TraU n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IUV9_RHOS4 Length = 328 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 149/338 (44%), Positives = 202/338 (59%), Gaps = 18/338 (5%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 MK + + L L G A+ A C +F+NPIT++CW CIFP+S+GSIKV K PDT Sbjct: 1 MKGLFFAMALALGIGASGASFAK--CNAKFLNPITEVCWDCIFPISIGSIKVLN-KRPDT 57 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGF----SLPAFGKTA 116 NPS+P+ +CP PP R+GLAIG WEP LTDV GC VN+GF L + GK++ Sbjct: 58 KNPSLPVCLCPGTPP---RVGLAIGLWEPARLTDVANEAGCFVNMGFKADLGLFSIGKSS 114 Query: 117 QGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSL 176 ++ D+ G+ + H+Y YPL WL + CLE DIAY+SE DP W DS L Sbjct: 115 VTSSDGDQT---GSKWQAHYYYYPLISWLGTVVDGLCLETTAFDIAYISEFDPLWQDSEL 171 Query: 177 TTILNPEAVIFANPIAQGACAADAI-ASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSP 235 TILNPEAV+FANPIAQ ACAAD + +SA +P+D LFWC G QG MYP G + Sbjct: 172 NTILNPEAVLFANPIAQAACAADCVRSSAGGLPMDSLFWCNGCQGGMYPMQGDSNAHYGG 231 Query: 236 LQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQ-- 293 +Q+S V+ +M + HR G+ T G ++A+C +PI+ K ++R+Q+ Sbjct: 232 IQASETVTAKMLARQHRLGLARRTSG-SSALCTTATAPIIKKSQYRFQVTRPRAAVSGRY 290 Query: 294 -CHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 C P G S ++ + P ++FG+L+WRKRNC L Sbjct: 291 ACGPLGSSTQLVDSMRQFPYKGESFGWLIWRKRNCCAL 328 >UniRef50_Q1MY35 TraU n=1 Tax=Bermanella marisrubri RepID=Q1MY35_9GAMM Length = 334 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 140/339 (41%), Positives = 197/339 (58%), Gaps = 14/339 (4%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 M + + L+ +F G +++ C G+F NP+TDICW C+FP+ +G V+ G+VP Sbjct: 1 MLKNILLISVFTIVGLFSSSAFSVVCPGKFPNPVTDICWKCMFPIFIGPAGVTNGEVPTG 60 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAF-------G 113 P P+ CPAPPP+F R G+ I +WEP + +V RSP C +LG + G Sbjct: 61 EVPP-PVCTCPAPPPVFIRFGVGISFWEPARMAEVVRSPMCSPSLGGTKLGEFSLNATQG 119 Query: 114 KTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLN-IITSLGCLEGGDMDIAYLSEIDPTWT 172 ++G+ D+ N AFYHVHW+ YPL W+ IT C+ +D+ +SE+DPTW+ Sbjct: 120 SNSKGSTDVDD---NMAFYHVHWFTYPLLSWVGSAITQGACMSTETLDLTAMSELDPTWS 176 Query: 173 DSSLTTILNPEAVIFANPIAQGACAADAIA-SAFNMPLDVLFWCAGSQGSMYPFNGWVSN 231 D LT LNPEAV+FANPI+ ACAADA++ S N LD LFWC+GS G +YP G +S Sbjct: 177 DDELTFFLNPEAVLFANPISIAACAADAVSASVSNFGLDPLFWCSGSAGPVYPLTGQISG 236 Query: 232 ESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDS 291 S + SS L R A+KLHR G+ M+T A+C P PI+ K +++ MV P+ Sbjct: 237 NFSAVDSSALEVHRFAYKLHRAGLAMDTS-TYAAMCMPIPQPIIRKRQYKQNMVYPVPNP 295 Query: 292 GQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 FG++ T W GK P +++ YL+WRKR C Sbjct: 296 AWGTGFGQTSTIWGVGKEFPYRGEDYAYLIWRKRMCCAF 334 >UniRef50_Q0F372 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F372_9PROT Length = 333 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 133/333 (39%), Positives = 188/333 (56%), Gaps = 10/333 (3%) Query: 6 WLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQG--KVPDTANP 63 +LL+ + H P A++AC GRF++PI DI W +FP+ +G V++ +PDT Sbjct: 3 FLLVAGIVLSHAPGI-ANAACSGRFIDPIADINWKNLFPIRIGGYVVAKAPPSLPDTRRD 61 Query: 64 S--MPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGF---SLPAFGKTAQG 118 S + CP P + RIG+ I +WEP+ L +V R P C +LG G Sbjct: 62 SGKKLLCHCPLSVPPYVRIGIPIAFWEPLRLGEVVRKPLCFPSLGGLDLGSSIGMTLPHG 121 Query: 119 TAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTT 178 K D+ +FYHVHW PL + LNIIT + CL+ DI Y++E+DP W+D L Sbjct: 122 ARKADKDGGKASFYHVHWLANPLLFILNIITDVVCLQKESFDILYVTELDPLWSDDELAL 181 Query: 179 ILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQS 238 ILNPEA++F NPIAQ ACAAD A+ ++PL+ LFWCAG QG +YPF G V++ + + Sbjct: 182 ILNPEALLFGNPIAQAACAADCAAATADLPLNPLFWCAGCQGGLYPFTGTVTDHVGGVMA 241 Query: 239 SLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSG-QCHPF 297 SLL+ ER K+HR+ + + C YP PI+ K+++RYQ+V S PF Sbjct: 242 SLLLVERFQAKMHRELLA-DFSSARVGQCQPYPFPIVVKDQYRYQLVLPIRQSTVPSLPF 300 Query: 298 GRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 GR+ T GK P ++F + WRKR+C Sbjct: 301 GRTETIVSPGKEFPVKGEDFVWQSWRKRDCCAF 333 >UniRef50_B4RLR4 TraU n=10 Tax=Neisseria RepID=B4RLR4_NEIG2 Length = 372 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 113/332 (34%), Positives = 174/332 (52%), Gaps = 34/332 (10%) Query: 25 ACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMP---IQICPAPPPLFRRIG 81 C+G+ +NPI DICWSC+FP+ +G K++ N S P C P R G Sbjct: 39 TCQGKMLNPINDICWSCMFPIKIGG-KINLNMDNQEDNGSSPNNWFCSCTHPS----RSG 93 Query: 82 LAIGYWEPMALTDVTRSPGCMVNLGFSLP--AFGKTAQGTAKKD---------------- 123 + + +WEP L +V R+P CMV+LG TA+ T K D Sbjct: 94 VTVSFWEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRG 153 Query: 124 ---EKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL 180 + + AFY VHWYK P+ +WL + C+E G +DI +++E+DPTW SL Sbjct: 154 RNEQHDQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQ 213 Query: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 P++ +FAN +AQ ACAAD + +A P + L+WCAG G++YP +GW+S S +Q++ Sbjct: 214 APDSALFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAK 273 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSG----QCHP 296 L++ R+ K+HR + T G+ +A+C +P++ K+ ++ M C P Sbjct: 274 LMAARIQTKMHRDLVAWRTSGR-DALCGYKLNPVMDKQNYKMAMTYPVAARKFRGRCCEP 332 Query: 297 FGRSVTRWETGKNPPNTKKNFGYLMWRKRNCV 328 GRS ++GK P F + ++RKR+C Sbjct: 333 IGRSTLVRDSGKAFPYKGNQFAFQLFRKRDCC 364 >UniRef50_Q5NX39 Sex pilus assembly and synthesis protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX39_AZOSE Length = 351 Score = 370 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 106/345 (30%), Positives = 155/345 (44%), Gaps = 18/345 (5%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQ-GKVPD 59 M +RL L+ F+ A P S C G+F NP+TDICWSC+FP+ + + V G+ Sbjct: 1 MIKRLLPLIAFVLALLTPLPSFAQTCPGKFPNPLTDICWSCMFPIRIFNANVLSMGQEDA 60 Query: 60 TANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLG-------FSLPAF 112 S + C G+ + +WE +V P C LG F Sbjct: 61 LTRDSSLLCSCLDKGGSTV-FGVPVEFWEQSRFAEVVNEPYCYPMLGGMQLDISFRGLIG 119 Query: 113 GKTAQGTAKKDEKQV-----NGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEI 167 G T + T D Q +F ++++Y P + + + C+E + D+AY S + Sbjct: 120 GTTEEITTATDYDQGAIRSGEKSFRNINYYVSPFMFIMQTVMDNDCMEKLNFDLAYTSNL 179 Query: 168 DPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNG 227 DP W D L I+ P FA+ AQ ACA D A+A P+ LFWCAG G YP G Sbjct: 180 DPMWDDPELAGIITPYMYAFADTAAQNACAVDCGAAAVGFPISSLFWCAGCNGGTYPLTG 239 Query: 228 WVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNM 287 ++ S Q+ L+++R+ K+H GMI T G + YP ++ K ++ Sbjct: 240 DNTSHLSAEQTGRLLTQRLLAKMHASGMIWATHGSDAMCRVGYPMLMMDKRAYKVSRTFY 299 Query: 288 YPDSG----QCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCV 328 P C P GR E G P K+ GY ++RKR+C Sbjct: 300 IPQRKVAGRCCDPLGRMTDLAEIGAEVPVYGKDMGYTIFRKRHCC 344 >UniRef50_B0RKU6 TraU family protein n=2 Tax=Yersinia RepID=B0RKU6_YEREN Length = 527 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 107/330 (32%), Positives = 178/330 (53%), Gaps = 15/330 (4%) Query: 2 KRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTA 61 K+ W ++ + V + A + C+ F+NPITDI WSCIFP+ + ++V G + + Sbjct: 208 KKLAWSVVGSVMDFLV--SPAHATCKSSFINPITDISWSCIFPMRIAGVQVV-GGEENPS 264 Query: 62 NPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSL--PAFGKTAQGT 119 N P+ +C IGL +WEP + D P CM+ LG L P G + G Sbjct: 265 NSQSPVCVCKGAA--LPMIGLKTSFWEPKRIIDTVSDPYCMMPLGTQLSKPVPGTLSGGY 322 Query: 120 AKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTI 179 + + F H++ +P LN+ + CL+ D+A ++EI P W + +L+ I Sbjct: 323 VETN--TSKRVFQQAHYFIFPAWKILNMFYDIPCLDDEGFDVAMMTEILPQWNNEALSLI 380 Query: 180 LNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSS 239 +NPEA++FANP+A AC+ADAIA + MPL+ LFWC GS G++YP +G +++ ++++ Sbjct: 381 INPEALLFANPVATIACSADAIAGTYGMPLNALFWCMGSWGNVYPLSGSITSTD-FVEAN 439 Query: 240 LLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGR 299 ++ R F + R G++ T ++ C +PI K+R++ Q++ + C P GR Sbjct: 440 AGIAARSIFTMGRLGLLWNT---SDDGCYRELAPIWKKDRFKLQLMRPT-RANACLPIGR 495 Query: 300 SVTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 W GK+ P NF ++M+ K++C Sbjct: 496 EGLLWTGGKHDPLK-DNFMWMMFEKKDCCI 524 >UniRef50_A1AKL4 TraU family protein n=3 Tax=Desulfuromonadales RepID=A1AKL4_PELPD Length = 340 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 119/332 (35%), Positives = 171/332 (51%), Gaps = 13/332 (3%) Query: 5 LWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPS 64 L MLFL A S AC G+ +NP+TDICW C+FP+ +GS G P N + Sbjct: 10 FTLAMLFLLAPLAYGGSG--ACRGKMLNPVTDICWQCMFPVKIGSATFGNGDEPAPGNIT 67 Query: 65 MPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSL--PAFGKTAQGTAKK 122 P+ +CP + +GL+ +WE L + R P C LG + P G + Sbjct: 68 SPVCVCPDSKGILV-LGLSTAFWEHARLIETVREPFCFPALGTGMTNPKPGFYSGENRNA 126 Query: 123 DEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNP 182 + N AF H++ +P L + C E D+AY++E+DP W D SL+ I+NP Sbjct: 127 EYGDSNLAFQQAHYFHFPAWSILKLFMDFPCSENKAFDLAYMTEVDPLWNDDSLSFIINP 186 Query: 183 EAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLV 242 EA++F NP++Q AC AD++A+ P+D LFWC GS GS YP +G + E++PL + + Sbjct: 187 EALLFGNPVSQLACVADSVAATVTQPVDPLFWCMGSWGSFYPLSGSM-VENNPLNVNAGL 245 Query: 243 SERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVT 302 + RM FKL R+ ++ +T G N +PIL K +R QM C P GR Sbjct: 246 AARMLFKLGRETLLFDT-GINQCASGGVVTPILVKSNYRLQMARPV-RGNDCIPIGRPSL 303 Query: 303 RWETGKNPP-----NTKKNFGYLMWRKRNCVF 329 W KNPP N+ NF + + R+R C Sbjct: 304 VWGAAKNPPFGTANNSPDNFLWSLTRRRVCCV 335 >UniRef50_Q4HP78 Trau protein n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HP78_CAMUP Length = 333 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 127/334 (38%), Positives = 189/334 (56%), Gaps = 9/334 (2%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSAC---EGRFVNPITDICWSCIFPLSLGSIKVSQGKV 57 +K L F P A++ C + +N + +CWSCIFPLS+ I+V+ G + Sbjct: 5 LKLSLIAFASFSIISFFP-QKAEAVCTPNPAQIINTLGSLCWSCIFPLSVAGIQVAHGPM 63 Query: 58 PDT-ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTA 116 PD + PI ICPAPPPLF RIG+ IGY+EP + D + P C + LGF +P Sbjct: 64 PDPQGSVGSPICICPAPPPLFIRIGIPIGYFEPNRMIDSVKDPYCFMGLGFGIPELVGAG 123 Query: 117 QGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSL 176 +GT K D FY H+Y YP+ L+I+T C+ G +DIAY++E+DP W D L Sbjct: 124 KGT-KGDGNDRTRVFYQSHYYIYPVIEILSILTDFICMSIGGIDIAYMTEVDPLWQDDEL 182 Query: 177 TTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPL 236 T ++NPEA++F NPI+ +C AD+++S N+ LD LFWC GS G+ YP +G ++ + Sbjct: 183 TALINPEALLFGNPISNLSCMADSVSSMANVTLDPLFWCKGSWGNAYPLSGNTGSKD-YV 241 Query: 237 QSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHP 296 + + V+ M +KLHR+ ++ E+ G+ +C E+P PI K +R Q+ P Sbjct: 242 EDAASVAAGMIYKLHRELILWESAGQL-GLCGEFPMPIWRKSSYRLQITAPIPHP-MGMS 299 Query: 297 FGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 G+S W KN P+ NF +L+++KR C Sbjct: 300 IGQSGILWSFAKNLPSLGDNFSFLLFKKRECCMF 333 >UniRef50_Q2LU05 Conjugal DNA transfer protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU05_SYNAS Length = 339 Score = 358 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 119/326 (36%), Positives = 178/326 (54%), Gaps = 10/326 (3%) Query: 10 LFLFAGHVPAASADSACE-GRFVNPITDICWSCIFPLSLGSIKVSQGKVPD--TANPSMP 66 F+ A A + C G +NP+TD+CW CIFP+S+ I++ G V + MP Sbjct: 19 FFVLLILFHAVGAQAVCRSGIPLNPVTDLCWQCIFPVSIAGIEIIPGPVENNVPDLSGMP 78 Query: 67 IQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQ 126 + CPAPPPLF RIG+ + +WEP + + P C +LGF L A G G +++ Sbjct: 79 VCACPAPPPLFIRIGIPVSFWEPARYVETVKDPYCFPSLGFGLTAAGGFLGGGSQEQGNA 138 Query: 127 V--NGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEA 184 F H++ YP+ + ++T C+E D+AYL+E+DP W + L IL PE+ Sbjct: 139 SVDTSTFAQAHYFIYPVWSIMELLTDFACIEHSGFDVAYLTEVDPLWQNDILAFILEPES 198 Query: 185 VIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSE 244 ++F NPIAQ AC AD++++ + LFWC GS GS YP G V N+ + L ++ ++ Sbjct: 199 ILFGNPIAQTACIADSVSTNAGFSMSPLFWCIGSGGSAYPLTGHV-NDDNELMANSTIAA 257 Query: 245 RMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRW 304 RM +KL R+G++ +T +C P+PI K WR + D CHPFGR+ W Sbjct: 258 RMVYKLAREGLVCDT---ALNLCACVPTPIWVKHNWRMHVAKPVRDF-MCHPFGRTGLIW 313 Query: 305 ETGKNPPNTKKNFGYLMWRKRNCVFL 330 KNPP NF + ++R+R+C Sbjct: 314 GALKNPPLVGDNFVWQLFRRRSCCAF 339 >UniRef50_Q6MB91 Putative F pilus assembly protein traU n=2 Tax=Parachlamydiaceae RepID=Q6MB91_PARUW Length = 311 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 117/302 (38%), Positives = 176/302 (58%), Gaps = 9/302 (2%) Query: 31 VNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPM 90 +NP TD+CW C+FPL++ + V+ G PD + + I C PP R+G+ + +WEP+ Sbjct: 1 MNPFTDVCWECVFPLTVSGVSVTPGH-PDLSKSNKRICTCAGVPP---RVGIPLTFWEPL 56 Query: 91 ALTDVTRSPGCMVNLGF-SLPAFGKTAQGTAKK-DEKQVNGAFYHVHWYKYPLTYWLNII 148 L DVTR +V LG S+ + +GT + + YHVHWY +PL LN++ Sbjct: 57 NLVDVTRHAYRLVGLGGVSVGSDSIKNRGTVSVLGDGPAQTSVYHVHWYHFPLLSLLNLL 116 Query: 149 TSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMP 208 T C+E GD+D+ YLSE+DP W D +L I+NPEA +F +P+AQ +C AD ++ N P Sbjct: 117 TDFICVEQGDVDLPYLSELDPLWNDDTLALIVNPEAALFNSPLAQVSCIADCSMASLNHP 176 Query: 209 LDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCN 268 +D LFWCAG +GS+YP G V++ SP+Q+S L+ +R+ KLHR ++ C Sbjct: 177 IDELFWCAGCEGSLYPLTGVVAHHLSPIQASYLLVQRLIAKLHRMFLLKGY--DKGEFCE 234 Query: 269 EYPSPILPKERWRYQMVNMYPDS-GQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNC 327 PIL K ++ ++ P + G CH G+S W GK+ P ++F YL+W K++C Sbjct: 235 AQMMPILKKTLYKTHLIYPIPQTSGLCHALGKSDLLWGIGKSFPIQGEDFVYLIWSKKHC 294 Query: 328 VF 329 Sbjct: 295 CL 296 >UniRef50_C5F1U6 Trau protein n=2 Tax=Helicobacter pullorum MIT 98-5489 RepID=C5F1U6_9HELI Length = 334 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 117/330 (35%), Positives = 181/330 (54%), Gaps = 10/330 (3%) Query: 6 WLLMLFLFAGHVPAASADSAC---EGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT-A 61 + + + L G + A++ C + + +CW CIFP+S+ I V QG +PD Sbjct: 10 FGVSMALSIGLLLPPKAEAICNVNPAQIAETMFSMCWECIFPISIAGIPVIQGHMPDPLG 69 Query: 62 NPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAK 121 S PI +CPAPPPLF RIG+ IGYWEP D+T+ C +G ++ + Q K Sbjct: 70 TVSTPICLCPAPPPLFIRIGIPIGYWEPSRSIDITKDAYCFAGMGINMGI--SSTQRGTK 127 Query: 122 KDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEG-GDMDIAYLSEIDPTWTDSSLTTIL 180 + + ++ F+H H+Y YP+ + I CL G +DIAY++E+DP W D L ++ Sbjct: 128 GNAESLSRTFFHSHYYIYPVFELIGIFVDTMCLRGVQGIDIAYMTEVDPLWNDDQLGALI 187 Query: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 +PEA++F NPI AC AD++++ N+ LD LFWC GS G+ YP G + ++ ++ S Sbjct: 188 SPEALLFGNPITNLACIADSVSAQANISLDPLFWCKGSWGNAYPLTGNTNTKN-YVEDSA 246 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 V+ M +KLHR+ ++ +A+C E+P PI K +R Q++ P G+S Sbjct: 247 SVAASMIYKLHRELILWNGA-TASALCGEHPMPIWLKNAYRMQLMYPIPHP-TATGIGQS 304 Query: 301 VTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 W KNP NF YL+++K +C L Sbjct: 305 GIIWTPAKNPQMIGDNFNYLLFKKVDCCAL 334 >UniRef50_A2SNI5 Conjugal DNA transfer protein n=3 Tax=Burkholderiales RepID=A2SNI5_METPP Length = 353 Score = 344 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 106/318 (33%), Positives = 154/318 (48%), Gaps = 19/318 (5%) Query: 25 ACEGRFVNPITDICWSCIFPLSL-GSIKVSQGKVPDTANP-SMPIQICPAPPPLFRRIGL 82 C+G F N ITD+CWSC FPL L G D A+ + C +PP +G+ Sbjct: 36 MCQGSFPNLITDVCWSCTFPLKLFGQAAFDSAGGEDYASSDKTSVCTCKSPPT----VGI 91 Query: 83 AIGYWEPMALTDVTRSPGCMVNLGFSLPAFG------KTAQGTAKKDEKQVNGAFYHVHW 136 +WE +TDVT +PGC LG + G + Q +F V+ Sbjct: 92 PTSFWELNQMTDVTTTPGCFPMLGGAKVNVGVNADAYGHNGNNEQGGMAQARESFRQVNL 151 Query: 137 YKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGAC 196 Y P Y + + C++ +DI ++S DPT D L IL P A F + +A GA Sbjct: 152 YINPAMYIMGAVLDNSCMDNRGIDIPWVSFADPTHNDEELANILTPYAFPFGSMVAIGAM 211 Query: 197 AADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMI 256 +ADA+A+ P+ +FW AGS G MYP G S QS+ L + R+ KLH G Sbjct: 212 SADAVAATAGFPIPEIFWAAGSFGPMYPLTGTNQAHLSNEQSARLQTTRVLAKLHAAGTQ 271 Query: 257 METIGKNNAVCNEYPSPILPKERWRYQMVNMYPDS-----GQCHPFGRSVTRWETGKNPP 311 G N+A+C+ YP I+ K +++ Q + P + C P GR+ E+G P Sbjct: 272 WAAAG-NDAMCSYYPQIIMDKRQYKLQRLYPRPQTEKINGKCCDPIGRTTILTESGTEAP 330 Query: 312 -NTKKNFGYLMWRKRNCV 328 +T ++FGY ++RKR+C Sbjct: 331 LSTFRDFGYAIFRKRDCC 348 >UniRef50_C4NVV3 TraU n=27 Tax=Gammaproteobacteria RepID=C4NVV3_ECOLX Length = 335 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 116/336 (34%), Positives = 172/336 (51%), Gaps = 11/336 (3%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFV---NPITDICWSCIFPLSLGSIKV--SQG 55 M +++ +M V + SAD C+ V ITDICWSCIFP+ + + + G Sbjct: 1 MMQKILRIMAVSAVFWVGSVSADPGCQNAEVIGGKLITDICWSCIFPIKVAGVPISGGGG 60 Query: 56 KVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKT 115 P A S P+ +C + R G+ WEP L + R PGC L F +T Sbjct: 61 SFPSEA-VSNPLCMCEDNLGV-PRPGVTTSMWEPARLVEFQRVPGCSSVLNGVRFPFDRT 118 Query: 116 AQGTAKKDEKQVNG-AFYHVHWYKYPLTYWLNIITSLGCLEGG--DMDIAYLSEIDPTWT 172 QG + +F H H+Y +PL L++ C G D+DI Y+SE+DPTW Sbjct: 119 NQGHHGMGDMDGGDGSFMHYHYYAFPLLVMLDLFIKQTCNADGYMDLDIMYMSELDPTWN 178 Query: 173 DSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNE 232 + L NPEA ANPIA AC ADA++S PL LFWCAGS G++YPF+G + Sbjct: 179 NDELAFFTNPEAAAVANPIAAAACTADAVSSTAGKPLKQLFWCAGSWGTLYPFSGNQNGG 238 Query: 233 SSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSG 292 ++ S L+S R+ LHR+G+ +T+G + A+C SP LPK ++++ +++ P++ Sbjct: 239 KGVIRDSSLLSTRVLAALHRRGLAWKTMG-SEAMCRGVISPTLPKTQYKFTLLHPVPETN 297 Query: 293 QCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCV 328 H G S W + P ++ Y +WR +C Sbjct: 298 SSHVIGESTLTWGLARTIPAIGQDPIYTIWRWNDCC 333 >UniRef50_Q19NQ7 TrhU n=9 Tax=Enterobacteriaceae RepID=Q19NQ7_ECOK1 Length = 386 Score = 336 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 106/338 (31%), Positives = 166/338 (49%), Gaps = 17/338 (5%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 M M VP A SA G + I +ICWSCIFP+ + I G P+ Sbjct: 51 MLSLSIPGMAMAADAGVPGAMCQSA--GVWQGLIKNICWSCIFPMRIMGI----GAAPEG 104 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA 120 A PS P C + IG + +++P+ + +V +SP C L ++ + G + Sbjct: 105 AAPSRPGCYCTDQNGV-PEIGWQLSFFQPVKIVEVVKSPWCSPFLEGTMLQKSQFDIGKS 163 Query: 121 KKDE--KQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMD--IAYLSEIDPTWTDSSL 176 ++ FY VH +++P+ L ++ C +D + Y+SE+DP W L Sbjct: 164 NTNQPMTATEAGFYDVHLWEFPIMTMLKLLIIGECTAEPYIDASLTYISEVDPMWESDLL 223 Query: 177 TTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPL 236 T +LNPEAV+FANPIA CAAD +A ++CAG G++YP G + + Sbjct: 224 TLVLNPEAVVFANPIASMVCAADCVAVTAGKDNLAAYFCAGCDGNLYPLTGHIYANDDAV 283 Query: 237 QSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSG---Q 293 ++S L+++R+ KLHRQGM+M T+G +A+C + P+ ++R M+ P++ Sbjct: 284 RTSSLITQRLLTKLHRQGMLMRTMGA-DAMCEKTWEYFTPRSQYRLSMLFPTPEAKGPDC 342 Query: 294 CHPFGRSVTRWET--GKNPPNTKKNFGYLMWRKRNCVF 329 CH G SV W T G N+ Y++WR +C Sbjct: 343 CHRLGDSVHDWSTLKGGRKKIGNDNYVYMLWRYNDCCV 380 >UniRef50_Q8L271 Pilus biogenesis protein n=2 Tax=Enterobacteriaceae RepID=Q8L271_PROVU Length = 358 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 94/308 (30%), Positives = 149/308 (48%), Gaps = 15/308 (4%) Query: 32 NPITDICWSCIFPLSLGSIKVSQ-GKVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPM 90 TD+CWSCIFP+ + + G VP+ A + C ++ G+ WEP Sbjct: 52 KLFTDVCWSCIFPIKVAGATIGPSGSVPNDAATGS-VCACADGLGVY-HPGIMSALWEPR 109 Query: 91 ALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNG-----AFYHVHWYKYPLTYWL 145 ++TR+PGCM +LG + G Q + D + +FY+ H Y PL L Sbjct: 110 RFIELTRTPGCMSSLGGAKLNLGSELQYGTQTDSAKDERQRAAISFYNAHMYAMPLLRML 169 Query: 146 NIITSLGCLEGG--DMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIAS 203 ++ C D DI +EIDPTW +S+L NPE+ AN +AQ AC +A A Sbjct: 170 DLYLPGSCNADPYSDFDIISFTEIDPTWNNSALAFFQNPESAAVANIVAQQACTVEAAAQ 229 Query: 204 -AFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGK 262 A P L+WCAGS G YP G V +P +++ L + R HR+G+ ++G Sbjct: 230 FAGAQPQSALWWCAGSWGGQYPLTGSVRTMDTP-RTTSLAATRQLAVEHRRGLAYRSVG- 287 Query: 263 NNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWETG--KNPPNTKKNFGYL 320 N+ C P +PK++++ M P++ + H G S +W+ G + P ++ Y+ Sbjct: 288 NDVACRAKIYPTIPKQQYKMNMFYPTPETKKGHNIGESPYKWQGGSFRYPTGMGQDSVYM 347 Query: 321 MWRKRNCV 328 +++ +C Sbjct: 348 IFQWTDCC 355 >UniRef50_C1SHD7 TraU protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHD7_9BACT Length = 333 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 108/349 (30%), Positives = 170/349 (48%), Gaps = 35/349 (10%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVP-- 58 MK+ L ++ L A SA + C G ++PIT + W+C P+S+G I + P Sbjct: 1 MKKILIIIFLL------SANSAFALCAGPMLDPITRVRWNCFLPISIGGIPIGTSGNPLA 54 Query: 59 DTANPSM----PIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSL--PAF 112 D A+ SM P+ +C P P RIG+ +GY EP+ + + + P C LGF + A+ Sbjct: 55 DMADRSMGTQSPVCLCMDPLP---RIGITLGYREPIRIIESVKDPFCFPTLGFGMSSSAW 111 Query: 113 GKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEG--------GDMDIAYL 164 G +G K K F + H + + + I T L C++ G + IAY+ Sbjct: 112 GSGVKGRNSKPAKD----FTNTHMFIFLPFTMMEIFTDLICMQTDSKYTGVLGGLSIAYM 167 Query: 165 SEIDPTWTDSSLTTILNPEAVIFANPIAQGAC-AADAIASAFNMPLDVLFWCAGSQGSMY 223 SE D T +L PE V+FANP+A AC D+IAS + L+WCAG+ S++ Sbjct: 168 SEFDITKRSDQAALLLTPEVVLFANPLAIMACQIPDSIASLAEYTIPPLYWCAGNH-SVF 226 Query: 224 PFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQ 283 P + + S+ ++S + + ++ F +HR + + G +C+ YP PI K ++R Q Sbjct: 227 PTSNNTMSMSNFTEASEVNASKLIFSMHRTLQLWGSFGA-QGLCSYYPMPIWNKMQYRLQ 285 Query: 284 MVNMYPDSGQCHPFGRSVTRWETGKNPPN--TKKNFGYLMWRKRNCVFL 330 PD+ C G+ W NPP N +++WRKR+C Sbjct: 286 TAMPVPDN-FCRRLGQPSIVWNRFLNPPGAPNNDNMVFILWRKRDCCAF 333 >UniRef50_A9AU19 TraU family protein n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AU19_BURM1 Length = 337 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 106/342 (30%), Positives = 170/342 (49%), Gaps = 27/342 (7%) Query: 4 RLW--LLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKV---SQGKVP 58 RLW +++ +G+ A+A + C G F N ITD+C+ CIFP+S+ + G Sbjct: 2 RLWASVVLALCLSGN---ANAQALCNGSFPNLITDVCYDCIFPISIMGGFINMGVSGDDY 58 Query: 59 DTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGF-------SLPA 111 DT P+ +C +G + +WEP + D T PGCM LG + Sbjct: 59 DTGASHFPVCVCANNLA----VGTPVSFWEPRYMVDTTTKPGCMPLLGGIDIKTPYNAAE 114 Query: 112 FGKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTW 171 +G A K AF V+ Y P+ L ++ + CL+ D+ +LS DPTW Sbjct: 115 YGAENVTNAAISGK-RKAAFMQVNEYVNPIMSALGVVVNNPCLDNRSFDVPFLSWADPTW 173 Query: 172 TDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSN 231 D +L+ +L P A FA + A DAI++ F P+++LFW AG+ G MYP NG V+ Sbjct: 174 NDDALSLMLTPYAYPFAGIPSIAAELPDAISATFGFPMEILFWVAGAWGPMYPLNGNVAI 233 Query: 232 ESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAV--CN--EYPSPILPKERWRYQMVNM 287 ++P Q S L+ R+ KLH + N+A+ C P ++ K +++ V Sbjct: 234 ANTPEQVSHLMIARLFAKLH-AAGAAQATAGNDALQSCGALGVPQLVMDKRQYKTNRVFP 292 Query: 288 YPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 +PD+ +C P GR + E G P K++GY+++++++C Sbjct: 293 FPDN-KCTPIGRPLAFQEIGAARP-QDKDYGYIIFQRKDCCA 332 >UniRef50_A5KZG2 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZG2_9GAMM Length = 233 Score = 306 bits (783), Expect = 9e-82, Method: Composition-based stats. Identities = 108/233 (46%), Positives = 149/233 (63%), Gaps = 4/233 (1%) Query: 102 MVNLGFSLPAFGKTAQGTAKKD--EKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDM 159 MVN+G L G A+ D K AFY VHWYKYP+ YWL ++ S C+ + Sbjct: 1 MVNMGMQLSNDNSQKIGGAQHDSSAKTSGNAFYQVHWYKYPVIYWLQLMQSAACMATDNF 60 Query: 160 DIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFN--MPLDVLFWCAG 217 D+AYL+E+DP W D ++ ILNPEA++F +PI Q +C +A+A+ +P D LFWC G Sbjct: 61 DVAYLTELDPFWDDDEMSFILNPEAILFGHPITQLSCITEAMATTTGRVLPFDALFWCLG 120 Query: 218 SQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPK 277 SQGS+YP G + + Q L+ ER FK+HRQG++ ET G++ AVC ++P PILPK Sbjct: 121 SQGSVYPLTGNSAYSHTGPQVGTLMLERFNFKMHRQGVVWETRGEDGAVCYQWPEPILPK 180 Query: 278 ERWRYQMVNMYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 R+RYQ+ D+ C+P+G + + WE GK+ P T NFG++ WRKRNCVFL Sbjct: 181 SRYRYQLSAPIGDAAHCYPYGTTSSLWEQGKDNPTTGGNFGFVNWRKRNCVFL 233 >UniRef50_Q1NGS7 Conjugal DNA transfer protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGS7_9SPHN Length = 324 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 102/329 (31%), Positives = 160/329 (48%), Gaps = 17/329 (5%) Query: 8 LMLFLFAGHVPAASADSACE-GRFVNPITDICWSCIFPLSLGSIKVSQ----GKVPDTAN 62 ++ G PA + S CE G NPIT + W+CIFP+++G ++V K D + Sbjct: 1 MLSLASIGSTPAHA--SKCEAGTIFNPITKVRWNCIFPITIGGVRVGTFDKLDKELDAQS 58 Query: 63 PSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAK- 121 S P+ C + G+ + +W P + DV PGCM+ +G L G QG+ Sbjct: 59 ASKPLCACRKGATFW--FGVKVSFWSPNRMIDVVTEPGCMMAVGADLLPTGGRLQGSQSS 116 Query: 122 -KDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL 180 D F +H+Y P+ L++ T L C + D+A ++E+ PTW +L I+ Sbjct: 117 IADGTNSQKLFAQMHYYISPVWKMLDMFTDLPCTQDDGFDVAMITEVLPTWQSGTLGAII 176 Query: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 PEA++F NP A AC AD+ A+A +D LFWC GS G+ YP G + S +++ Sbjct: 177 QPEAILFGNPAAGLACMADSAAAAAGKVIDPLFWCMGSWGATYPVAGDIHFGDS-VEAWA 235 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 ++ R F + R G + TI + C+ PI K R++ Q++ G+C GR Sbjct: 236 GLAARGTFMMGRLGAL--TISSADG-CSFKAQPIWTKSRYKLQIMEPV-KGGKCVNIGRP 291 Query: 301 VTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 W +GK+ P N ++ + K C Sbjct: 292 GALWSSGKHAPGK-DNAQFMSFEKVICCA 319 >UniRef50_B7XGS0 Putative pilus assembly protein n=2 Tax=Pseudomonas RepID=B7XGS0_PSEPU Length = 350 Score = 304 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 99/340 (29%), Positives = 159/340 (46%), Gaps = 22/340 (6%) Query: 8 LMLFLFAGHVPAASADSACEGRF---------VNPITDICWSCIFPLSLGSIKVSQGKVP 58 L++ +P +AD+A G TDICW+C+FP+ + ++++ G P Sbjct: 11 LLMIAGMFSLPGIAADTASSGEVMCEDSGLFGPKLFTDICWACLFPIRVSGVQITPGTAP 70 Query: 59 DTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGF-SLPAFGKTAQ 117 A M IC + G+ WEP + + R PGC LG +LP K + Sbjct: 71 AKAT-KMVFCICQEGSSSIYKPGIITAMWEPARMVETVRKPGCSPTLGGVTLPLGNKRSY 129 Query: 118 GTAKKDEK----QVNGAFYHVHWYKYPLTYWLNIITSLGCLEGG--DMDIAYLSEIDPTW 171 G ++D Q G+FYH H Y +PL L++ T C G D+DI +EIDPTW Sbjct: 130 GRLRQDNSTQTGQAAGSFYHAHLYAFPLLQILDLYTPTKCNPDGYLDLDIISFTEIDPTW 189 Query: 172 TDSSLTTILNPE-AVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVS 230 + +L +PE A + A A+ +A PL+ L+WC G+ GS+YPF G V+ Sbjct: 190 NNGTLAFFQHPESAAVANPIAIAACAAESALVTARKEPLESLWWCTGTWGSIYPFAG-VT 248 Query: 231 NESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPD 290 +++ L++ R+ + HR+G+ T+G + VC P +PK +++ Sbjct: 249 VAQDANRTTALLAARVIAQQHRRGLARRTMG-DENVCKAGIYPTIPKSQYKVTQFWPKSQ 307 Query: 291 SGQCHPFGRSVTRWETG--KNPPNTKKNFGYLMWRKRNCV 328 + + G WE G ++ P T + Y+ WR +C Sbjct: 308 NSRAMWLGEPPQTWEGGPSRHVPGTGNDAMYMFWRWTDCC 347 >UniRef50_Q4LC37 TraU protein n=2 Tax=Sodalis glossinidius RepID=Q4LC37_SODGL Length = 256 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 173/307 (56%), Positives = 196/307 (63%), Gaps = 60/307 (19%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 MK L +L+L G P A AD+AC+GRFVN ITDICW C+FP+S+GS++V +G VPDT Sbjct: 10 MKAWLSVLVLLAGLGLSPTAGADAACQGRFVNLITDICWRCLFPISIGSVQVGKGDVPDT 69 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA 120 NP PIQ CP PP LF+RIGLAIGYWEP Sbjct: 70 GNPGSPIQFCPMPPLLFQRIGLAIGYWEP------------------------------- 98 Query: 121 KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL 180 ++ + GCLE GDMDIAYLSE+DPTW DSSLTTIL Sbjct: 99 ---------------------MAMTDVTRTPGCLELGDMDIAYLSELDPTWVDSSLTTIL 137 Query: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 NPEAVIFANPIAQG CAADAIAS F++PLDVLFWCAGSQGSMYPFNGWVS E SPLQSS+ Sbjct: 138 NPEAVIFANPIAQGVCAADAIASGFHLPLDVLFWCAGSQGSMYPFNGWVSKEISPLQSSV 197 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 LV+ RMAFKLHRQG I ETIGK+ VC ++PSPI+PK RWRYQMV C P Sbjct: 198 LVTARMAFKLHRQGQIWETIGKDREVCYKFPSPIMPKARWRYQMV--------CTPTAPV 249 Query: 301 VTRWETG 307 RW Sbjct: 250 AIRWGAA 256 >UniRef50_A0L2Z2 TraU family protein n=1 Tax=Shewanella sp. ANA-3 RepID=A0L2Z2_SHESA Length = 359 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 96/360 (26%), Positives = 160/360 (44%), Gaps = 59/360 (16%) Query: 23 DSACE--GRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRI 80 DS C G F N I CWSC P +L VP AN S + C + + Sbjct: 3 DSVCPDAGYFSNLINSFCWSCTLPFNLAGF---SDNVPKGANSSR-LCSCSDALGV-PEL 57 Query: 81 GLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNG--AFYHVHWYK 138 G+++GYW P L +V+ +P C LG +L T +G A + Q +F H ++ Sbjct: 58 GVSLGYWSPDHLVEVSATPWCSPTLGGTLLQNDMTMRGRASNPDTQSAETVSFLHYNYII 117 Query: 139 YPLTYWLNIITSLGCLEGG---DMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGA 195 P+ L + C D+DIAY+S +D T+ +S+L+ + P+A+ ANP+ + Sbjct: 118 NPVFKMLGLFLLPECDTSPGYFDLDIAYMSILDVTYENSALSFLFTPDAIPIANPVGRAI 177 Query: 196 CAADA-IASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQG 254 C AD I ++ + L++CAG G +YP G++ ++ ++++ L++ R LHR+G Sbjct: 178 CVADGMITASSGSANEALWFCAGLDGPLYPLTGFIGADNDFIRNTQLITTRSLAALHRRG 237 Query: 255 MIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSG---------------------- 292 + +T GK A+CN SP++PK +++ M+ P++ Sbjct: 238 LARKTYGK-EAMCNAEYSPMIPKAQYKISMMYPSPEANPAAASAVKPTKAFNIEDLQNPE 296 Query: 293 ---------------------QCHPFGRSVTRWETGKNPPNTKKN--FGYLMWRKRNCVF 329 CHP G W +G+ P K+ Y ++R +C Sbjct: 297 TGDYDNSEDKNKSTLDGSWDECCHPLGWPTIWWGSGRKSPGNGKDQHAVYSIFRYTDCCV 356 >UniRef50_B7J844 Conjugal transfer protein TraU, putative n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J844_ACIF2 Length = 416 Score = 281 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 94/394 (23%), Positives = 152/394 (38%), Gaps = 72/394 (18%) Query: 7 LLMLFLFAGHVPAASADSACE--GRFVNPITDICWSCIFPLSLGSIKVSQGK--VPDTAN 62 L++ F A + C G F I +CWS +FPL + + G VP+ A+ Sbjct: 14 LVLTFAVPALATGAQVATLCPDAGVFNELIGGVCWSALFPLRIAGMTWFGGNSGVPNGAS 73 Query: 63 PSMPIQICPAPPPL-FRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQG--- 118 + + L +G+ IGYW+P L + P C LG T Sbjct: 74 SGFMCECGGSWSHLQLPTVGVQIGYWQPTMLMEAVSHPFCSPVLGGVSLQPDSTVGSQWT 133 Query: 119 -------TAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEG-GDMDIAYLSEIDPT 170 N F++VH + +PL + + C G M++ +SE+ PT Sbjct: 134 GSWGGNVGTGVSTGNKNSTFFNVHLWTFPLITMMQLANIPDCNTGYSGMNLMLMSEVFPT 193 Query: 171 WTDSSLTTILNPEAVIFANPIAQ-GACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWV 229 W D L+ + +PE +++ NPI GA A S P+D +W AG G +YP G Sbjct: 194 WNDDLLSFLASPEELLYDNPIGLLGATEECAQESLGAQPIDDEYWTAGCWGLLYPMVGSN 253 Query: 230 SNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNM-- 287 + P+Q+S + RM R G + T+G N+ +C + +LPK ++R+Q++ Sbjct: 254 LGGNDPIQASNIDVARMIAMGFRLGFLERTMG-NSTLCGPRRTYVLPKAQYRFQILFPND 312 Query: 288 ----YPDS-----------------------------------------------GQC-H 295 P++ G+C H Sbjct: 313 ETNQEPNASVTAPNVSAQPSGGSMPPANYVTPAASNQGTLPQNGGVNIQAPPTQSGECTH 372 Query: 296 PFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 G++ +W P T N+ YL+W+ NC Sbjct: 373 WMGQTPFQWGEWDTQPATGGNYVYLVWQWTNCCL 406 >UniRef50_B3CR07 Putative conjugative transfer protein TraU n=1 Tax=Orientia tsutsugamushi str. Ikeda RepID=B3CR07_ORITI Length = 193 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 117/195 (60%), Gaps = 4/195 (2%) Query: 8 LMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPI 67 ++ + A A + C GRFVNPITD+CW C+FP+++ KV +PDT I Sbjct: 1 MLAIVMAITANNCYAAAGCVGRFVNPITDVCWKCLFPITIAGFKVVSSSMPDTNPSGRLI 60 Query: 68 QICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQV 127 +CP P G+ +G+WE + L DVT+SP CMV+LG +FG AQ K ++ Sbjct: 61 CLCPKPGIPVPVPGIPVGFWELVRLVDVTKSPMCMVSLGG--FSFGSAAQKGMK--DEAE 116 Query: 128 NGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIF 187 AFYH+HWY YP+ YWL I+ CLE +DIAYL+E DP W+D + +TILNPE ++F Sbjct: 117 GSAFYHIHWYVYPVIYWLKILLDFICLEMAAVDIAYLTEFDPLWSDDAKSTILNPETLLF 176 Query: 188 ANPIAQGACAADAIA 202 N A AC AD ++ Sbjct: 177 QNVAAYQACIADCMS 191 >UniRef50_C0QUV2 Putative TraU n=1 Tax=Persephonella marina EX-H1 RepID=C0QUV2_PERMH Length = 324 Score = 214 bits (544), Expect = 4e-54, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 141/345 (40%), Gaps = 55/345 (15%) Query: 12 LFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICP 71 L + + +A C +NPI+ + WS F ++ +C Sbjct: 3 LISSFSISLAATPPC----INPISTVDWS-FFADTIEF---------------KGTCVCS 42 Query: 72 APPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNGAF 131 + ++G+ + EP+A + + G + F + + GA Sbjct: 43 TSGAI--KVGVKLQLAEPIAFIETPNKAWDFICFGSTRDKFSVQKKDGTNLGK---KGAK 97 Query: 132 YHVHWYKYPLTYWLNIITSLGC-LEGGDMDI--AYLSEIDPTWTDSSLTTILNPEAVIFA 188 + H+ KYP+ LNI C + + DI LSEI+P D L I P ++FA Sbjct: 98 TNAHYIKYPVFGVLNITFDNLCTMHDLEFDIIPTGLSEINPLLWDDELAMIAQPWKLLFA 157 Query: 189 NPIAQGACAADAIASAFNMPLDV---------LFWCAGSQGSMYPFNGWVSNESSPLQSS 239 NPIAQ C AD ++S+ P +V LF+CAG G++ P + S ++S+ Sbjct: 158 NPIAQVLCLADCVSSSVVFPSNVDTFETVRNGLFYCAGCWGAIQPNTTTTRGKDSVVESA 217 Query: 240 L-------LVSERMAFKLHRQ--GMIMETIGK------NNAVCNEYPSPILPKERWRYQM 284 L L+ E + K++++ G+ + ++ C P++ K ++ + Sbjct: 218 LTAVKLIDLLHESLQLKVYKEVSGLGWASNFSSGFPIPSDVACQPKFFPVIVKSQY--WL 275 Query: 285 VNMYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 YP + P G +W K P+ ++N + +WR RNC Sbjct: 276 NLSYPVAWDAIPIGDFPPKWSWFKKYPSKEENI-WTIWRIRNCCL 319 >UniRef50_B3SF21 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SF21_TRIAD Length = 152 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 50/114 (43%), Positives = 69/114 (60%) Query: 146 NIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAF 205 ++ C+E +DIAY+SE DP W + L ILNPEA +F NPIAQ AC D I + Sbjct: 39 ELLADFICMEQMSIDIAYMSEFDPLWGNDKLNVILNPEAALFGNPIAQTACIFDCIKATT 98 Query: 206 NMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMET 259 D+LF CAG GS+YPF G + + +Q+S L+ ER+ +LHR G+ +T Sbjct: 99 GFSSDMLFHCAGCNGSLYPFGGSIEHTQGGVQASTLIVERLLARLHRVGLAWDT 152 >UniRef50_Q2G6B7 Putative uncharacterized protein n=4 Tax=Sphingomonadales RepID=Q2G6B7_NOVAD Length = 371 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 11/119 (9%) Query: 26 CEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRIGLAIG 85 C G+FVNPITDICWSC+FP+S+G +K+ PD +NP++P+ +C R G+A+G Sbjct: 37 CTGKFVNPITDICWSCLFPISIGGLKIWPSSRPDPSNPALPVCLCG------LRPGIAMG 90 Query: 86 YWEPMALTDVTRSPGCMVNLGFSLPAFG-----KTAQGTAKKDEKQVNGAFYHVHWYKY 139 +WEP+ L DV+ P C VNLG G K+ G + + +HVHWY Y Sbjct: 91 FWEPVRLADVSMKPWCFVNLGGMKLDPGFDIGFKSMAGPSAVGGATQYNSQWHVHWYAY 149 >UniRef50_B7LWZ0 Protein traU n=1 Tax=Escherichia coli 55989 RepID=B7LWZ0_ECO55 Length = 71 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 58/68 (85%), Positives = 58/68 (85%), Gaps = 4/68 (5%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGK---- 56 MKRRLWLLMLFL AGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQG Sbjct: 1 MKRRLWLLMLFLLAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGMGAEF 60 Query: 57 VPDTANPS 64 VP PS Sbjct: 61 VPSCTYPS 68 >UniRef50_A2UW00 Putative uncharacterized protein n=1 Tax=Shewanella putrefaciens 200 RepID=A2UW00_SHEPU Length = 337 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 92/294 (31%), Gaps = 71/294 (24%) Query: 72 APPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKK--------- 122 P + R + ++ P ALT+V L L G+A Sbjct: 65 NWPVVSIRYSTLVEFYSPDALTEVYHKQSNTPLLSGKLQNSVSNTLGSATAGSLGGLPLK 124 Query: 123 --DEKQVNGAFYHVHWYKYPLTYWLNIITSLG------CLEGGD-MDIAYLSEIDPTWTD 173 + F H P+ N + C + + Y S++D W + Sbjct: 125 LENNSSSTEGFRSAHLMGNPMLSLHNSVLGGVLGNVGYCESPVNPLQTYYHSDLD--WFE 182 Query: 174 SSLTTILNPEAVI-FANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNE 232 I EA++ F N + + D A GS+YP GW +N Sbjct: 183 WRAGFI---EALLYFPNMLKR---VYDGSAM---------------WGSLYPRVGWGTNN 221 Query: 233 SSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRY---------- 282 SSP S+ + S R + ++ + + +P E R+ Sbjct: 222 SSPFISAAITSLR----------AANIVSGYDSFSSNHIQVPMPDENPRFYYPPNTKPKV 271 Query: 283 -------QMVNMYPDSGQCHPFGRSVTRWETGKNPPN-TKKNFGYLMWRKRNCV 328 + + P + C S E G N P +N+ +++WRK C Sbjct: 272 DIENGKWKALWPAP-TDSCSVLPISGITSEIGTNEPYVQNRNYVFMLWRKYTCC 324 >UniRef50_A1TQT3 Putative uncharacterized protein n=2 Tax=Comamonadaceae RepID=A1TQT3_ACIAC Length = 431 Score = 42.3 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 6/113 (5%) Query: 218 SQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPK 277 + G +P G + P+++S +++ER+ ++R +Y K Sbjct: 312 TWGPTFPRTGEIIQAH-PVKASAVLAERVKSIIYRSAQPHIYAKVELQGTKDYVYFNEDK 370 Query: 278 ERWRYQMVNMYPDSGQCHPFG--RSVTRWETGKNPPNTKKNFGYLMWRKRNCV 328 +W QM++ C FG S++ G ++ + + +W+ C Sbjct: 371 AQW--QMLHPN-VWTSCEQFGTNDSLSLTSWGDAQTDSADGYSWNLWKHYVCC 420 >UniRef50_Q3JDC6 Putative uncharacterized protein n=2 Tax=Nitrosococcus oceani RepID=Q3JDC6_NITOC Length = 340 Score = 41.5 bits (96), Expect = 0.045, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 14/125 (11%) Query: 214 WCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGM----IMETIGKNNAVCNE 269 W + G +YP GW + P +++ + ++R R G + T G ++ Sbjct: 203 WPLQTWGGVYPRTGWTTQSEEP-KAAAINAQRAGDIATRTGQPHIYVPITGGSSSGQRVW 261 Query: 270 YPSPIL--PKERWRYQMVNMYPDSGQCHPFGRSVTR----WETGKNPPNTKKNFGYLMWR 323 P P++ +QM+ ++ C FG + W +G+ + ++ + +WR Sbjct: 262 PPGPLVEDDPATGEWQMLLPKSEA-TCKVFGTNDLASLSGWGSGRVD--AQGDYVWNLWR 318 Query: 324 KRNCV 328 +C Sbjct: 319 PYSCC 323 >UniRef50_C4X2G1 Putative uncharacterized protein n=11 Tax=Proteobacteria RepID=C4X2G1_KLEPN Length = 371 Score = 41.1 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 9/115 (7%) Query: 219 QGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGM--IMETIGKNNAVCNEYPSPIL- 275 G++YP G +S +++ ++++R+A + R G I + ++ PSPI+ Sbjct: 249 WGNIYPRAGAISQTHDY-KAAAVIAQRVADLVTRTGQPHIYTPLAASSRAGYWPPSPIIE 307 Query: 276 -PKERWRYQMVNMYPDSGQCH-PFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCV 328 + R+QM+ + P G + + + + + +WR C Sbjct: 308 GDSDNHRWQMLTPKKSAACSVFPDGSATDTY---ADKLAEDGAYAWTLWRPYKCC 359 >UniRef50_Q5P8L2 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P8L2_AZOSE Length = 334 Score = 40.7 bits (94), Expect = 0.077, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 18/128 (14%) Query: 214 WCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQG-------MIMETIGKNNAV 266 W A + G++YP G V + ++ + ++S+R+A + R G + G + Sbjct: 197 WPANTWGNVYPRTGEVVQQH-EVKGAAVLSQRIADFVTRSGQPHVYVPVSSGKRGVRDGQ 255 Query: 267 CNEYPSPILPKER----WRYQMVNMYPDSGQCHPFG--RSVTRWETGKNPPNTKKNFGYL 320 P P + W+ + CH FG +++ G ++ Y Sbjct: 256 LVWDPPPAMETNLLGGLWQMNVAVPT----GCHVFGLNDTLSPVSYGDAKTTQSGSYAYT 311 Query: 321 MWRKRNCV 328 +WR C Sbjct: 312 LWRPYACC 319 >UniRef50_A4A4E6 Secreted protein containing DUF1527 n=1 Tax=Congregibacter litoralis KT71 RepID=A4A4E6_9GAMM Length = 341 Score = 40.4 bits (93), Expect = 0.096, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 14/125 (11%) Query: 214 WCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQG------MIMETIGKNNAVC 267 W + G +YP GW + P +++ + ++R + R G I + + + Sbjct: 203 WPLQTWGGVYPRTGWTTQAEEP-KAAAINAQRAGDIVTRNGQPHIYDQIEPSSSSDQRIW 261 Query: 268 NEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTR----WETGKNPPNTKKNFGYLMWR 323 + P +QM+ +S C FG + W G+ + ++ + +WR Sbjct: 262 SPGPLVEDDPATGEWQMLLPKAES-SCAVFGTNDLASANGWGGGRVD--EEGDYAWNLWR 318 Query: 324 KRNCV 328 C Sbjct: 319 PYQCC 323 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P18471 Protein traU n=44 Tax=root RepID=TRAU_ECOLI 481 e-134 UniRef50_Q5ZTS6 TraU n=3 Tax=Legionella RepID=Q5ZTS6_LEGPH 445 e-124 UniRef50_B6ICG0 TraU protein n=11 Tax=Gammaproteobacteria RepID=... 440 e-122 UniRef50_A9L6J8 TraU family protein n=14 Tax=Gammaproteobacteria... 436 e-121 UniRef50_D0Z581 IncF plasmid conjugative transfer pilus assembly... 435 e-121 UniRef50_C4YVM8 Conjugal DNA transfer protein TraU n=3 Tax=Ricke... 424 e-117 UniRef50_A5VGR9 TraU family protein n=18 Tax=Alphaproteobacteria... 424 e-117 UniRef50_A8F1T8 Conjugal DNA transfer protein TraU n=17 Tax=Rick... 419 e-116 UniRef50_B2I3Z5 TraU family protein n=14 Tax=Proteobacteria RepI... 419 e-116 UniRef50_C4Z005 Sex pilus assembly n=1 Tax=Rickettsia endosymbio... 408 e-112 UniRef50_A8QYQ7 TraU protein n=2 Tax=Legionellaceae RepID=A8QYQ7... 407 e-112 UniRef50_Q3IUV9 TraU n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID... 386 e-106 UniRef50_B0RKU6 TraU family protein n=2 Tax=Yersinia RepID=B0RKU... 379 e-104 UniRef50_Q1MY35 TraU n=1 Tax=Bermanella marisrubri RepID=Q1MY35_... 378 e-103 UniRef50_Q0F372 Putative uncharacterized protein n=1 Tax=Maripro... 374 e-102 UniRef50_B4RLR4 TraU n=10 Tax=Neisseria RepID=B4RLR4_NEIG2 374 e-102 UniRef50_Q5NX39 Sex pilus assembly and synthesis protein n=1 Tax... 368 e-100 UniRef50_C5F1U6 Trau protein n=2 Tax=Helicobacter pullorum MIT 9... 368 e-100 UniRef50_A1AKL4 TraU family protein n=3 Tax=Desulfuromonadales R... 367 e-100 UniRef50_Q4HP78 Trau protein n=1 Tax=Campylobacter upsaliensis R... 365 e-100 UniRef50_Q2LU05 Conjugal DNA transfer protein n=1 Tax=Syntrophus... 362 1e-98 UniRef50_Q6MB91 Putative F pilus assembly protein traU n=2 Tax=P... 355 2e-96 UniRef50_A2SNI5 Conjugal DNA transfer protein n=3 Tax=Burkholder... 346 9e-94 UniRef50_Q19NQ7 TrhU n=9 Tax=Enterobacteriaceae RepID=Q19NQ7_ECOK1 344 3e-93 UniRef50_C4NVV3 TraU n=27 Tax=Gammaproteobacteria RepID=C4NVV3_E... 339 7e-92 UniRef50_Q8L271 Pilus biogenesis protein n=2 Tax=Enterobacteriac... 329 7e-89 UniRef50_A9AU19 TraU family protein n=1 Tax=Burkholderia multivo... 319 7e-86 UniRef50_C1SHD7 TraU protein n=1 Tax=Denitrovibrio acetiphilus D... 314 2e-84 UniRef50_B7XGS0 Putative pilus assembly protein n=2 Tax=Pseudomo... 312 1e-83 UniRef50_Q1NGS7 Conjugal DNA transfer protein n=1 Tax=Sphingomon... 306 9e-82 UniRef50_A0L2Z2 TraU family protein n=1 Tax=Shewanella sp. ANA-3... 303 8e-81 UniRef50_A5KZG2 Putative uncharacterized protein n=1 Tax=Vibrion... 301 2e-80 UniRef50_Q4LC37 TraU protein n=2 Tax=Sodalis glossinidius RepID=... 298 2e-79 UniRef50_B7J844 Conjugal transfer protein TraU, putative n=1 Tax... 275 1e-72 UniRef50_B3CR07 Putative conjugative transfer protein TraU n=1 T... 242 8e-63 UniRef50_C0QUV2 Putative TraU n=1 Tax=Persephonella marina EX-H1... 239 7e-62 UniRef50_B3SF21 Putative uncharacterized protein (Fragment) n=1 ... 163 1e-38 UniRef50_A2UW00 Putative uncharacterized protein n=1 Tax=Shewane... 158 3e-37 UniRef50_Q2G6B7 Putative uncharacterized protein n=4 Tax=Sphingo... 155 2e-36 UniRef50_B7LWZ0 Protein traU n=1 Tax=Escherichia coli 55989 RepI... 74 9e-12 Sequences not found previously or not previously below threshold: UniRef50_A4A4E6 Secreted protein containing DUF1527 n=1 Tax=Cong... 50 1e-04 UniRef50_Q3JDC6 Putative uncharacterized protein n=2 Tax=Nitroso... 49 2e-04 UniRef50_Q1ZJS4 Putative uncharacterized protein n=1 Tax=Photoba... 49 2e-04 UniRef50_C4X2G1 Putative uncharacterized protein n=11 Tax=Proteo... 48 4e-04 UniRef50_B0UVG6 Putative uncharacterized protein n=9 Tax=Pasteur... 47 0.001 UniRef50_A1TQT3 Putative uncharacterized protein n=2 Tax=Comamon... 46 0.002 UniRef50_Q5P8L2 Putative uncharacterized protein n=1 Tax=Aromato... 45 0.005 UniRef50_D0FVV8 Conserved uncharacterized protein n=21 Tax=Enter... 43 0.015 UniRef50_A9IG24 Putative uncharacterized protein n=62 Tax=Proteo... 41 0.076 >UniRef50_P18471 Protein traU n=44 Tax=root RepID=TRAU_ECOLI Length = 330 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 330/330 (100%), Positives = 330/330 (100%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT Sbjct: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA 120 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA Sbjct: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA 120 Query: 121 KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL 180 KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL Sbjct: 121 KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL 180 Query: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL Sbjct: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS Sbjct: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 Query: 301 VTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 VTRWETGKNPPNTKKNFGYLMWRKRNCVFL Sbjct: 301 VTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 >UniRef50_Q5ZTS6 TraU n=3 Tax=Legionella RepID=Q5ZTS6_LEGPH Length = 331 Score = 445 bits (1145), Expect = e-124, Method: Composition-based stats. Identities = 168/337 (49%), Positives = 220/337 (65%), Gaps = 14/337 (4%) Query: 2 KRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIK-VSQGKVPDT 60 + ++L+ FL +G A S C GRFVNPITD+CWSC+FP SLG VS +PDT Sbjct: 1 MKAFFILIAFLASGLTQAGS----CHGRFVNPITDVCWSCLFPFSLGQANLVSSNHLPDT 56 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKT-AQGT 119 NP +P+ CP P R+GL +GYWEP+ L DVTR+P C+VNLG FGK +G Sbjct: 57 KNPKLPVCECPGNP--IPRLGLTMGYWEPVNLVDVTRTPFCLVNLGGISLNFGKYYRKGA 114 Query: 120 AKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTI 179 + D N +FYHVHWYK+PL YWLN++T C+E GD DIAY SE+D W D L + Sbjct: 115 VETDSNLSNQSFYHVHWYKFPLMYWLNVLTDGICVEKGDFDIAYPSELDVMWNDDELGFV 174 Query: 180 LNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSS 239 +NPEAV+F + AQ ACAAD+ + +D LFWCAG+QGSMYP G V +Q+S Sbjct: 175 INPEAVLFGSLPAQAACAADSSTALLGSAIDKLFWCAGAQGSMYPLTGHVQEHVGGVQAS 234 Query: 240 LLVSERMAFKLHRQGMIMETIGKNN------AVCNEYPSPILPKERWRYQMVNMYPDSGQ 293 +L+SERM FKLHRQG++ +T+G ++ ++C+ + SPILPK R+RYQMVN P + Sbjct: 235 VLLSERMNFKLHRQGLLEDTVGLDDSTSSAKSICHTHYSPILPKSRYRYQMVNPLPTTNA 294 Query: 294 CHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 C+P GR+ T WE G P ++FGYL+WRKRNC Sbjct: 295 CYPLGRATTLWEAGHEYPFKGEDFGYLIWRKRNCCAF 331 >UniRef50_B6ICG0 TraU protein n=11 Tax=Gammaproteobacteria RepID=B6ICG0_ECOSE Length = 332 Score = 440 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 210/324 (64%), Positives = 254/324 (78%), Gaps = 1/324 (0%) Query: 7 LLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMP 66 L+ L L AG+V A D C+G FVNPI+DICW CIFP+S+G + V G PDT NPSMP Sbjct: 10 LIALGLCAGNVLAEDKDKMCDGNFVNPISDICWECIFPMSIGDVSVFDGDAPDTDNPSMP 69 Query: 67 IQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQ 126 +QICP P + RIG+AIGYWEP ALTDVTRSP CMVNLG GK G A ++++ Sbjct: 70 LQICPLVP-IGYRIGMAIGYWEPFALTDVTRSPYCMVNLGGFNIPVGKVGAGNAGQEDRP 128 Query: 127 VNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVI 186 V G FYHVHWYKYPLTYWLNII S+ CL+ GD+DI YLSE+DPTW D +L+ IL+PEA++ Sbjct: 129 VAGGFYHVHWYKYPLTYWLNIIMSIACLQRGDLDIGYLSELDPTWDDDALSLILSPEALV 188 Query: 187 FANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERM 246 ANPIAQGACAADAI + P++ LFWCAGS GS+YPF G++S+E SP QSS+L+SERM Sbjct: 189 VANPIAQGACAADAIKTVKGKPINALFWCAGSHGSLYPFTGFISDEFSPQQSSVLLSERM 248 Query: 247 AFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWET 306 AFKLHRQGMI+ +IG++ VC EY SPI+PK+R+RYQMVNM+PD+ CHPFGR+V WE Sbjct: 249 AFKLHRQGMILNSIGEDQKVCKEYYSPIMPKDRFRYQMVNMHPDTKACHPFGRTVMAWEA 308 Query: 307 GKNPPNTKKNFGYLMWRKRNCVFL 330 G PNTKKN+GYL+WRKRNCVFL Sbjct: 309 GHASPNTKKNYGYLIWRKRNCVFL 332 >UniRef50_A9L6J8 TraU family protein n=14 Tax=Gammaproteobacteria RepID=A9L6J8_SHEB9 Length = 337 Score = 436 bits (1122), Expect = e-121, Method: Composition-based stats. Identities = 164/334 (49%), Positives = 224/334 (67%), Gaps = 5/334 (1%) Query: 2 KRRLWLLMLFLFAGHVPAAS-ADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 + WL+ L L G +P+ + A +AC G FVNP+TDICWSCIFP+++GS+ + G +PDT Sbjct: 4 IKLAWLVALSLLMGLIPSQANAQAACTGTFVNPMTDICWSCIFPMTIGSVPIIPGSLPDT 63 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGT- 119 NP PI CP PPP+F +IGL IGYWEP L DVTR P CMVN+G L G Sbjct: 64 RNPVSPISFCPKPPPIFMQIGLNIGYWEPDTLVDVTRVPYCMVNMGMKLDMSNSPQIGGR 123 Query: 120 -AKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTT 178 +D +GAFYH HWYKYP+ YWL I+ S C+ + DIAYL+EIDP W D L+ Sbjct: 124 VTSRDNDASDGAFYHGHWYKYPVIYWLQIMQSAACMATDNFDIAYLTEIDPLWDDDELSF 183 Query: 179 ILNPEAVIFANPIAQGACAADAIASAFN--MPLDVLFWCAGSQGSMYPFNGWVSNESSPL 236 ILNPEA++F N ++Q ACA +A+A++ N +P D LFWC GSQGS YP G + +P+ Sbjct: 184 ILNPEAILFGNLVSQLACATEAVATSTNSILPFDFLFWCMGSQGSAYPLTGTTNYRDTPI 243 Query: 237 QSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHP 296 Q+ L+ ER+ +KLHRQG++ E+ G++ A+C + P P++PK R+RYQM N PD+ HP Sbjct: 244 QAGTLILERLNYKLHRQGIVWESHGEDGAICYQTPMPLMPKSRYRYQMTNTIPDALWAHP 303 Query: 297 FGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 + + WE+G + P + NFG++ ++KRNCVFL Sbjct: 304 YTTTTVIWESGHDNPVSGDNFGFINFKKRNCVFL 337 >UniRef50_D0Z581 IncF plasmid conjugative transfer pilus assembly protein TraU n=3 Tax=Gammaproteobacteria RepID=D0Z581_LISDA Length = 346 Score = 435 bits (1119), Expect = e-121, Method: Composition-based stats. Identities = 171/334 (51%), Positives = 228/334 (68%), Gaps = 5/334 (1%) Query: 2 KRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTA 61 K LW+L L A+++ AC RF+NPITDICW CIFP++LGS+ + + PDT Sbjct: 13 KPLLWVLGFSLLMASNAASASGPACRARFMNPITDICWECIFPITLGSVPLIPSRHPDTP 72 Query: 62 NPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA- 120 NPS+PI CP PPP+F ++GL IGYWEP A+TDVTR P CMVNLGFSL G Sbjct: 73 NPSLPISFCPKPPPIFMQVGLNIGYWEPYAITDVTRVPFCMVNLGFSLGGGMSQQIGGQN 132 Query: 121 --KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTT 178 KK +GAFY HWYKYPL YWL I+ S C+ + D+ YL+E+DP W D L+ Sbjct: 133 SYKKPGDSSSGAFYQAHWYKYPLIYWLQILQSSACMAMDNFDVGYLTELDPFWDDDELSF 192 Query: 179 ILNPEAVIFANPIAQGACAADAIASAFNM--PLDVLFWCAGSQGSMYPFNGWVSNESSPL 236 ILNPEA++F NPIAQ AC A+A+ ++ + P+D LFWC GSQGS YP G +P+ Sbjct: 193 ILNPEAILFGNPIAQLACVAEAVKTSTSFFLPIDALFWCMGSQGSAYPLTGNTGYRDTPM 252 Query: 237 QSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHP 296 QS++L++ER+ +KLHRQG++ E++G + AVC ++P PILPK R+RYQ+ N+ P+ C+P Sbjct: 253 QSAVLMAERLNYKLHRQGIVWESLGVDGAVCVQHPMPILPKSRYRYQLSNVIPNPFNCYP 312 Query: 297 FGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 +G + WE+G + P T NFG++ WRKRNCVFL Sbjct: 313 YGTTTAIWESGHDNPVTGDNFGFVQWRKRNCVFL 346 >UniRef50_C4YVM8 Conjugal DNA transfer protein TraU n=3 Tax=Rickettsieae RepID=C4YVM8_9RICK Length = 331 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 129/325 (39%), Positives = 188/325 (57%), Gaps = 7/325 (2%) Query: 6 WLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSM 65 ++++ +F+ + A SA C GRFVNPITD+CW C+FP+++ +K++ + DT + Sbjct: 12 TIILIIVFSLNRTAQSAVD-CVGRFVNPITDVCWKCLFPITIAGVKIAGSPMADTPSARN 70 Query: 66 PIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEK 125 + CP P G+ IG+WEP+ L DVT+SP CMV+LG + Sbjct: 71 LLCFCPRPGIAVPVPGIPIGFWEPVRLVDVTKSPMCMVSLGGISLGTSSQRGIK----DD 126 Query: 126 QVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAV 185 + AFYHVHWY YP+ YWL I+ CLE +D+AYL+E DP W D + + ILNPE++ Sbjct: 127 KEGTAFYHVHWYIYPVIYWLEILLDFMCLEMASVDVAYLTEFDPLWGDDAKSAILNPESL 186 Query: 186 IFANPIAQGACAADAIA-SAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSE 244 +FAN AQ C AD I+ S + D +FWCAG QGS+YPF G + + +S L+ Sbjct: 187 LFANIAAQSVCIADCISLSTGQLSNDAMFWCAGCQGSIYPFTGTTPYHNGGVGTSTLIVS 246 Query: 245 RMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRW 304 + KLHRQ M+ G +C +YP PI+ K ++R QM P+ C G + W Sbjct: 247 KFMAKLHRQLMLWGYYGT-EGLCGKYPMPIIQKSQYRLQMTYPIPEVSSCKKIGETEVTW 305 Query: 305 ETGKNPPNTKKNFGYLMWRKRNCVF 329 ++G+ P ++FGYL+WRKR+C Sbjct: 306 QSGREFPIKGEDFGYLIWRKRDCCL 330 >UniRef50_A5VGR9 TraU family protein n=18 Tax=Alphaproteobacteria RepID=A5VGR9_SPHWW Length = 340 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 155/334 (46%), Positives = 202/334 (60%), Gaps = 12/334 (3%) Query: 5 LWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPS 64 L++ L PA +A C G+FVNPITD+CWSC+FPLS+G +K+ PDT+NP+ Sbjct: 11 ALSLLVTLMLFAAPAQAAGPTCNGKFVNPITDVCWSCLFPLSVGGLKIWPSGRPDTSNPA 70 Query: 65 MPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFG-----KTAQGT 119 P+ C P P RIG+A+G+WEP L DVT P C NLG A G G Sbjct: 71 SPVCACADPLP---RIGIAVGFWEPARLADVTMKPWCFPNLGGIRIAPGFDIGQGYLAGP 127 Query: 120 AKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTI 179 + + + A +HVHWY YPL YW+ I+T C E DIAY++EIDP W D +LTT+ Sbjct: 128 SMVGGRSQSTAKWHVHWYVYPLLYWMEILTDFVCFEQASFDIAYMTEIDPLWQDDALTTL 187 Query: 180 LNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSS 239 +NPEA+IFANPIAQ ACA D IA N+PLD LFWCAG QGSMYP NG V +QSS Sbjct: 188 INPEAIIFANPIAQAACAGDCIAGTVNLPLDPLFWCAGCQGSMYPLNGNVPASIGHVQSS 247 Query: 240 LLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQ---CHP 296 L R A+K+HR+ + T+G + +C +Y PI+ K+++R+QMVN P C Sbjct: 248 RLAVSRFAYKMHREALAWGTMG-SKGLCKKYLMPIMRKQQYRFQMVNPIPTVSGRFACSA 306 Query: 297 FGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 G S + G+ P ++ GYL+WRKRNC L Sbjct: 307 IGASTMPPDAGRAYPAGGEDMGYLVWRKRNCCVL 340 >UniRef50_A8F1T8 Conjugal DNA transfer protein TraU n=17 Tax=Rickettsieae RepID=A8F1T8_RICM5 Length = 326 Score = 419 bits (1077), Expect = e-116, Method: Composition-based stats. Identities = 127/307 (41%), Positives = 181/307 (58%), Gaps = 6/307 (1%) Query: 25 ACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRIGLAI 84 C GRFVNPITD+CW C+FP+++G +K+ + DT NP + CP P G+ I Sbjct: 25 GCVGRFVNPITDVCWKCLFPITIGGVKIVSSSMADTNNPRQIVCFCPKPSIPMPVPGIPI 84 Query: 85 GYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYW 144 G+WEP+ L DVT+SP CMV+LG G + Q K + +FYHVHWY YP+ YW Sbjct: 85 GFWEPVRLVDVTKSPMCMVSLGGI--NLGTSMQKGVK--DDIEGSSFYHVHWYIYPVIYW 140 Query: 145 LNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASA 204 L I+ CLE +DI YL+E DP W D S ILNPE+++F + AQ AC AD I+S+ Sbjct: 141 LEILLDFACLEMSQVDITYLTEFDPLWGDDSKAAILNPESLLFGSIAAQSACIADCISSS 200 Query: 205 FN-MPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKN 263 + D +FWC G QGS+YPF G S+ + + +S L+ + KLHR+ ++ +G + Sbjct: 201 SGNLSNDRVFWCCGCQGSLYPFTGTTSSHNGGVGTSALIVAKFMAKLHRELLLWGYMGSS 260 Query: 264 NAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWR 323 +C +YP PI+ K ++R QM P+ C G + W+ + P ++FGYL+WR Sbjct: 261 -GLCGKYPMPIIKKSQYRLQMTYPIPEVHSCKKIGETEISWQGAREFPVKGEDFGYLIWR 319 Query: 324 KRNCVFL 330 KR+C Sbjct: 320 KRSCCLF 326 >UniRef50_B2I3Z5 TraU family protein n=14 Tax=Proteobacteria RepID=B2I3Z5_ACIBC Length = 347 Score = 419 bits (1077), Expect = e-116, Method: Composition-based stats. Identities = 133/342 (38%), Positives = 192/342 (56%), Gaps = 17/342 (4%) Query: 1 MKRRLWLLMLFLFAGHVPAASADS--------ACEGRFVNPITDICWSCIFPLSLGSIKV 52 MK+ +L L +F AA + S C G F NPI+DICWSCIFP+S+G + + Sbjct: 1 MKKFFTILFLLIFTNLSFAADSGSNNNGSKSLRCPGEFANPISDICWSCIFPISMGGMPL 60 Query: 53 SQGKVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAF 112 +G D +NPS C P +G+ G+WEP+ DVTR+P CMV+LG L Sbjct: 61 WKGGQEDNSNPSQLFCSCAIP---RIYLGIQTGFWEPVRRVDVTRTPYCMVSLGTELDVG 117 Query: 113 GKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWT 172 + +G + + +FY HWY P+ WL +I C E G DI Y++E+DP W Sbjct: 118 VEAPEGEVRLHDDNNRHSFYQAHWYTDPIMMWLEVIYEHPCTETGYFDIGYMTELDPMWN 177 Query: 173 DSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNE 232 D L+ IL+PEA +F NP+ Q ACA D + ++ + LFWCAG GS+YP NG V Sbjct: 178 DDELSAILSPEAALFTNPLTQAACAGDCVLASAGFGSNGLFWCAGCNGSIYPLNGNVGAH 237 Query: 233 SSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDS- 291 S +Q+S L+++R+A K+HRQ + T G+ +C YP PI+ K ++YQM+ + Sbjct: 238 VSHIQASSLIAQRLAAKMHRQFLTWGTNGEA-GLCGVYPQPIMDKTAYKYQMLYPVAQTK 296 Query: 292 ----GQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 C PFGR+ + W GK+ P T ++F Y ++RK+NC Sbjct: 297 KINGKCCQPFGRTTSVWGAGKSWPVTGEHFSYELFRKKNCCL 338 >UniRef50_C4Z005 Sex pilus assembly n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4Z005_9RICK Length = 361 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 139/342 (40%), Positives = 205/342 (59%), Gaps = 18/342 (5%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVP-- 58 + + L +L++ LF + SA+ C+GRFVNPITDICWSCI P+S+GSI + +G P Sbjct: 22 LTKSLIILIMALFMPF--SVSANITCQGRFVNPITDICWSCILPISIGSINIGKGAAPKK 79 Query: 59 -DTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGK--- 114 DT NPS PI +C G++IG+WEP+ L DVTR+P C+ NLG Sbjct: 80 RDTKNPSSPICMCTKDN--IPTPGISIGFWEPVRLVDVTRTPYCLTNLGGVSLGSDNKRI 137 Query: 115 TAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDS 174 ++ + D+ + +FYHVH+Y YPL YWL +IT CLE G D+AY+SE D TW D Sbjct: 138 SSFNRSYADKSYKHDSFYHVHYYAYPLIYWLELITDFACLEKGSFDVAYMSEFDVTWNDP 197 Query: 175 SLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESS 234 L ++LNPEA++F NPIAQ AC+ D A++ +P+D +FWC G G++YPF+G ++ Sbjct: 198 KLQSLLNPEAILFGNPIAQAACSMDCAAASLKLPIDSMFWCGGCLGNLYPFSGANADHEG 257 Query: 235 PLQSSLLVSERMAFKLHRQGMIMETIGKNNA----VCNEYPSPILPKERWRYQMVNMYPD 290 +QSS L++ R+ K HR G T ++ +C + + + K +++ QMVN Sbjct: 258 GVQSSSLLTLRVLAKQHRLGFADVTSTSSSKVNGPLCRKSKNLKIKKSQYKLQMVNPKAT 317 Query: 291 SG----QCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCV 328 +G C P G + T + + K P ++FGY++WRK+NC Sbjct: 318 TGGKDIGCWPVGLTDTLYSSFKEYPYKGQDFGYVIWRKKNCC 359 >UniRef50_A8QYQ7 TraU protein n=2 Tax=Legionellaceae RepID=A8QYQ7_9GAMM Length = 329 Score = 407 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 162/325 (49%), Positives = 219/325 (67%), Gaps = 6/325 (1%) Query: 8 LMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPI 67 + LF P S C G FVNPI D+CW C+FPLS+G+IKV +PDT N S PI Sbjct: 9 FVAILFVFSYPGWSKQ--CTGHFVNPIRDVCWRCLFPLSIGNIKVVNSSLPDTDNASSPI 66 Query: 68 QICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFG-KTAQGTAKKDEKQ 126 +CP+P L R+GL IG+WEP+ALTDVT +P C+VNLG G K ++G Sbjct: 67 GVCPSPMGL--RVGLNIGFWEPVALTDVTDTPYCLVNLGGIKLNLGLKQSRGGRHVVGNG 124 Query: 127 VNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVI 186 AF+HVHWYKYPL WLN+ITS+GC++GGD DIAYL+E+DPTW DS ++ +L+PE+V+ Sbjct: 125 QQRAFFHVHWYKYPLMSWLNLITSMGCMQGGDFDIAYLTELDPTWQDSEMSFVLSPESVL 184 Query: 187 FANPIAQGACAADAIASA-FNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSER 245 F NP+A +CAADA++S P+D LFWCAGSQG+ YP G V SP+Q++LL++ER Sbjct: 185 FGNPVAASSCAADALSSTLTKKPIDSLFWCAGSQGTHYPLTGHVHAPISPVQTALLLTER 244 Query: 246 MAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWE 305 M +K+HR+ ++ ++ + A+C E+ PK R+RY++VN D C+P G S WE Sbjct: 245 MNYKMHRELLLSDSSAASGAICKEHHYSATPKSRYRYEIVNQVADGKHCYPGGLSTLAWE 304 Query: 306 TGKNPPNTKKNFGYLMWRKRNCVFL 330 GK P+T +G+L+WRKRNC FL Sbjct: 305 FGKIKPHTPDQYGFLVWRKRNCTFL 329 >UniRef50_Q3IUV9 TraU n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IUV9_RHOS4 Length = 328 Score = 386 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 145/335 (43%), Positives = 194/335 (57%), Gaps = 12/335 (3%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 MK + + L L G A+ A C +F+NPIT++CW CIFP+S+GSIKV K PDT Sbjct: 1 MKGLFFAMALALGIGASGASFAK--CNAKFLNPITEVCWDCIFPISIGSIKVLN-KRPDT 57 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSL-PAFGKTAQGT 119 NPS+P+ +CP PP R+GLAIG WEP LTDV GC VN+GF + + Sbjct: 58 KNPSLPVCLCPGTPP---RVGLAIGLWEPARLTDVANEAGCFVNMGFKADLGLFSIGKSS 114 Query: 120 AKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTI 179 + G+ + H+Y YPL WL + CLE DIAY+SE DP W DS L TI Sbjct: 115 VTSSDGDQTGSKWQAHYYYYPLISWLGTVVDGLCLETTAFDIAYISEFDPLWQDSELNTI 174 Query: 180 LNPEAVIFANPIAQGACAADAI-ASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQS 238 LNPEAV+FANPIAQ ACAAD + +SA +P+D LFWC G QG MYP G + +Q+ Sbjct: 175 LNPEAVLFANPIAQAACAADCVRSSAGGLPMDSLFWCNGCQGGMYPMQGDSNAHYGGIQA 234 Query: 239 SLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQ---CH 295 S V+ +M + HR G+ T G + A+C +PI+ K ++R+Q+ C Sbjct: 235 SETVTAKMLARQHRLGLARRTSGSS-ALCTTATAPIIKKSQYRFQVTRPRAAVSGRYACG 293 Query: 296 PFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 P G S ++ + P ++FG+L+WRKRNC L Sbjct: 294 PLGSSTQLVDSMRQFPYKGESFGWLIWRKRNCCAL 328 >UniRef50_B0RKU6 TraU family protein n=2 Tax=Yersinia RepID=B0RKU6_YEREN Length = 527 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 173/328 (52%), Gaps = 11/328 (3%) Query: 2 KRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTA 61 K+ W ++ + V + A + C+ F+NPITDI WSCIFP+ + ++V G + + Sbjct: 208 KKLAWSVVGSVMDFLV--SPAHATCKSSFINPITDISWSCIFPMRIAGVQVV-GGEENPS 264 Query: 62 NPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAK 121 N P+ +C IGL +WEP + D P CM+ LG L Sbjct: 265 NSQSPVCVCK--GAALPMIGLKTSFWEPKRIIDTVSDPYCMMPLGTQLSKPVPGTLSGGY 322 Query: 122 KDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILN 181 + F H++ +P LN+ + CL+ D+A ++EI P W + +L+ I+N Sbjct: 323 VETNTSKRVFQQAHYFIFPAWKILNMFYDIPCLDDEGFDVAMMTEILPQWNNEALSLIIN 382 Query: 182 PEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLL 241 PEA++FANP+A AC+ADAIA + MPL+ LFWC GS G++YP +G +++ ++++ Sbjct: 383 PEALLFANPVATIACSADAIAGTYGMPLNALFWCMGSWGNVYPLSGSITSTD-FVEANAG 441 Query: 242 VSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSV 301 ++ R F + R G++ T ++ C +PI K+R++ Q++ + C P GR Sbjct: 442 IAARSIFTMGRLGLLWNT---SDDGCYRELAPIWKKDRFKLQLMRPT-RANACLPIGREG 497 Query: 302 TRWETGKNPPNTKKNFGYLMWRKRNCVF 329 W GK+ P NF ++M+ K++C Sbjct: 498 LLWTGGKHDPLK-DNFMWMMFEKKDCCI 524 >UniRef50_Q1MY35 TraU n=1 Tax=Bermanella marisrubri RepID=Q1MY35_9GAMM Length = 334 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 140/339 (41%), Positives = 197/339 (58%), Gaps = 14/339 (4%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 M + + L+ +F G +++ C G+F NP+TDICW C+FP+ +G V+ G+VP Sbjct: 1 MLKNILLISVFTIVGLFSSSAFSVVCPGKFPNPVTDICWKCMFPIFIGPAGVTNGEVPTG 60 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAF-------G 113 P P+ CPAPPP+F R G+ I +WEP + +V RSP C +LG + G Sbjct: 61 EVPP-PVCTCPAPPPVFIRFGVGISFWEPARMAEVVRSPMCSPSLGGTKLGEFSLNATQG 119 Query: 114 KTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLN-IITSLGCLEGGDMDIAYLSEIDPTWT 172 ++G+ D+ N AFYHVHW+ YPL W+ IT C+ +D+ +SE+DPTW+ Sbjct: 120 SNSKGSTDVDD---NMAFYHVHWFTYPLLSWVGSAITQGACMSTETLDLTAMSELDPTWS 176 Query: 173 DSSLTTILNPEAVIFANPIAQGACAADAIA-SAFNMPLDVLFWCAGSQGSMYPFNGWVSN 231 D LT LNPEAV+FANPI+ ACAADA++ S N LD LFWC+GS G +YP G +S Sbjct: 177 DDELTFFLNPEAVLFANPISIAACAADAVSASVSNFGLDPLFWCSGSAGPVYPLTGQISG 236 Query: 232 ESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDS 291 S + SS L R A+KLHR G+ M+T A+C P PI+ K +++ MV P+ Sbjct: 237 NFSAVDSSALEVHRFAYKLHRAGLAMDT-STYAAMCMPIPQPIIRKRQYKQNMVYPVPNP 295 Query: 292 GQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 FG++ T W GK P +++ YL+WRKR C Sbjct: 296 AWGTGFGQTSTIWGVGKEFPYRGEDYAYLIWRKRMCCAF 334 >UniRef50_Q0F372 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F372_9PROT Length = 333 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 132/335 (39%), Positives = 188/335 (56%), Gaps = 10/335 (2%) Query: 4 RLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQG--KVPDTA 61 +LL+ + H P A++AC GRF++PI DI W +FP+ +G V++ +PDT Sbjct: 1 MAFLLVAGIVLSHAPGI-ANAACSGRFIDPIADINWKNLFPIRIGGYVVAKAPPSLPDTR 59 Query: 62 NPS--MPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGF---SLPAFGKTA 116 S + CP P + RIG+ I +WEP+ L +V R P C +LG Sbjct: 60 RDSGKKLLCHCPLSVPPYVRIGIPIAFWEPLRLGEVVRKPLCFPSLGGLDLGSSIGMTLP 119 Query: 117 QGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSL 176 G K D+ +FYHVHW PL + LNIIT + CL+ DI Y++E+DP W+D L Sbjct: 120 HGARKADKDGGKASFYHVHWLANPLLFILNIITDVVCLQKESFDILYVTELDPLWSDDEL 179 Query: 177 TTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPL 236 ILNPEA++F NPIAQ ACAAD A+ ++PL+ LFWCAG QG +YPF G V++ + Sbjct: 180 ALILNPEALLFGNPIAQAACAADCAAATADLPLNPLFWCAGCQGGLYPFTGTVTDHVGGV 239 Query: 237 QSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPD-SGQCH 295 +SLL+ ER K+HR+ + + C YP PI+ K+++RYQ+V + Sbjct: 240 MASLLLVERFQAKMHRELLA-DFSSARVGQCQPYPFPIVVKDQYRYQLVLPIRQSTVPSL 298 Query: 296 PFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 PFGR+ T GK P ++F + WRKR+C Sbjct: 299 PFGRTETIVSPGKEFPVKGEDFVWQSWRKRDCCAF 333 >UniRef50_B4RLR4 TraU n=10 Tax=Neisseria RepID=B4RLR4_NEIG2 Length = 372 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 109/332 (32%), Positives = 172/332 (51%), Gaps = 34/332 (10%) Query: 25 ACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMP---IQICPAPPPLFRRIG 81 C+G+ +NPI DICWSC+FP+ +G K++ N S P C P R G Sbjct: 39 TCQGKMLNPINDICWSCMFPIKIGG-KINLNMDNQEDNGSSPNNWFCSCTHPS----RSG 93 Query: 82 LAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKT---------------------AQGTA 120 + + +WEP L +V R+P CMV+LG K + Sbjct: 94 VTVSFWEPTHLVEVVRTPFCMVSLGGISLKNQKADTAETTGKADVSNKIQNLFGGSHKRG 153 Query: 121 KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL 180 + ++ + AFY VHWYK P+ +WL + C+E G +DI +++E+DPTW SL Sbjct: 154 RNEQHDQHNAFYQVHWYKNPVVFWLEALLDNDCMEKGTLDIGWMTELDPTWKYPSLAVYQ 213 Query: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 P++ +FAN +AQ ACAAD + +A P + L+WCAG G++YP +GW+S S +Q++ Sbjct: 214 APDSALFANVVAQAACAADCVKAAAGFPFNKLYWCAGCHGTIYPLSGWMSGHFSEVQAAK 273 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSG----QCHP 296 L++ R+ K+HR + T G+ +A+C +P++ K+ ++ M C P Sbjct: 274 LMAARIQTKMHRDLVAWRTSGR-DALCGYKLNPVMDKQNYKMAMTYPVAARKFRGRCCEP 332 Query: 297 FGRSVTRWETGKNPPNTKKNFGYLMWRKRNCV 328 GRS ++GK P F + ++RKR+C Sbjct: 333 IGRSTLVRDSGKAFPYKGNQFAFQLFRKRDCC 364 >UniRef50_Q5NX39 Sex pilus assembly and synthesis protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX39_AZOSE Length = 351 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 105/345 (30%), Positives = 154/345 (44%), Gaps = 18/345 (5%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQ-GKVPD 59 M +RL L+ F+ A P S C G+F NP+TDICWSC+FP+ + + V G+ Sbjct: 1 MIKRLLPLIAFVLALLTPLPSFAQTCPGKFPNPLTDICWSCMFPIRIFNANVLSMGQEDA 60 Query: 60 TANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFS-------LPAF 112 S + C G+ + +WE +V P C LG Sbjct: 61 LTRDSSLLCSCLDKGGSTV-FGVPVEFWEQSRFAEVVNEPYCYPMLGGMQLDISFRGLIG 119 Query: 113 GKTAQGTAKKDEKQV-----NGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEI 167 G T + T D Q +F ++++Y P + + + C+E + D+AY S + Sbjct: 120 GTTEEITTATDYDQGAIRSGEKSFRNINYYVSPFMFIMQTVMDNDCMEKLNFDLAYTSNL 179 Query: 168 DPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNG 227 DP W D L I+ P FA+ AQ ACA D A+A P+ LFWCAG G YP G Sbjct: 180 DPMWDDPELAGIITPYMYAFADTAAQNACAVDCGAAAVGFPISSLFWCAGCNGGTYPLTG 239 Query: 228 WVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNM 287 ++ S Q+ L+++R+ K+H GMI T G + YP ++ K ++ Sbjct: 240 DNTSHLSAEQTGRLLTQRLLAKMHASGMIWATHGSDAMCRVGYPMLMMDKRAYKVSRTFY 299 Query: 288 YPDSG----QCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCV 328 P C P GR E G P K+ GY ++RKR+C Sbjct: 300 IPQRKVAGRCCDPLGRMTDLAEIGAEVPVYGKDMGYTIFRKRHCC 344 >UniRef50_C5F1U6 Trau protein n=2 Tax=Helicobacter pullorum MIT 98-5489 RepID=C5F1U6_9HELI Length = 334 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 118/334 (35%), Positives = 182/334 (54%), Gaps = 10/334 (2%) Query: 2 KRRLWLLMLFLFAGHVPAASADSAC---EGRFVNPITDICWSCIFPLSLGSIKVSQGKVP 58 K + + + L G + A++ C + + +CW CIFP+S+ I V QG +P Sbjct: 6 KILGFGVSMALSIGLLLPPKAEAICNVNPAQIAETMFSMCWECIFPISIAGIPVIQGHMP 65 Query: 59 DT-ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQ 117 D S PI +CPAPPPLF RIG+ IGYWEP D+T+ C +G ++ + Q Sbjct: 66 DPLGTVSTPICLCPAPPPLFIRIGIPIGYWEPSRSIDITKDAYCFAGMGINMGI--SSTQ 123 Query: 118 GTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGG-DMDIAYLSEIDPTWTDSSL 176 K + + ++ F+H H+Y YP+ + I CL G +DIAY++E+DP W D L Sbjct: 124 RGTKGNAESLSRTFFHSHYYIYPVFELIGIFVDTMCLRGVQGIDIAYMTEVDPLWNDDQL 183 Query: 177 TTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPL 236 +++PEA++F NPI AC AD++++ N+ LD LFWC GS G+ YP G + ++ + Sbjct: 184 GALISPEALLFGNPITNLACIADSVSAQANISLDPLFWCKGSWGNAYPLTGNTNTKN-YV 242 Query: 237 QSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHP 296 + S V+ M +KLHR+ ++ +A+C E+P PI K +R Q++ P Sbjct: 243 EDSASVAASMIYKLHRELILWNG-ATASALCGEHPMPIWLKNAYRMQLMYPIPHPT-ATG 300 Query: 297 FGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 G+S W KNP NF YL+++K +C L Sbjct: 301 IGQSGIIWTPAKNPQMIGDNFNYLLFKKVDCCAL 334 >UniRef50_A1AKL4 TraU family protein n=3 Tax=Desulfuromonadales RepID=A1AKL4_PELPD Length = 340 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 119/335 (35%), Positives = 171/335 (51%), Gaps = 13/335 (3%) Query: 2 KRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTA 61 L MLFL A S AC G+ +NP+TDICW C+FP+ +GS G P Sbjct: 7 ISIFTLAMLFLLAPLAYGGSG--ACRGKMLNPVTDICWQCMFPVKIGSATFGNGDEPAPG 64 Query: 62 NPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSL--PAFGKTAQGT 119 N + P+ +CP + +GL+ +WE L + R P C LG + P G + Sbjct: 65 NITSPVCVCPDSKGILV-LGLSTAFWEHARLIETVREPFCFPALGTGMTNPKPGFYSGEN 123 Query: 120 AKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTI 179 + N AF H++ +P L + C E D+AY++E+DP W D SL+ I Sbjct: 124 RNAEYGDSNLAFQQAHYFHFPAWSILKLFMDFPCSENKAFDLAYMTEVDPLWNDDSLSFI 183 Query: 180 LNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSS 239 +NPEA++F NP++Q AC AD++A+ P+D LFWC GS GS YP +G + E++PL + Sbjct: 184 INPEALLFGNPVSQLACVADSVAATVTQPVDPLFWCMGSWGSFYPLSGSM-VENNPLNVN 242 Query: 240 LLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGR 299 ++ RM FKL R+ ++ +T G N +PIL K +R QM C P GR Sbjct: 243 AGLAARMLFKLGRETLLFDT-GINQCASGGVVTPILVKSNYRLQMARPV-RGNDCIPIGR 300 Query: 300 SVTRWETGKNPP-----NTKKNFGYLMWRKRNCVF 329 W KNPP N+ NF + + R+R C Sbjct: 301 PSLVWGAAKNPPFGTANNSPDNFLWSLTRRRVCCV 335 >UniRef50_Q4HP78 Trau protein n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HP78_CAMUP Length = 333 Score = 365 bits (938), Expect = e-100, Method: Composition-based stats. Identities = 126/334 (37%), Positives = 188/334 (56%), Gaps = 9/334 (2%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSAC---EGRFVNPITDICWSCIFPLSLGSIKVSQGKV 57 +K L F P A++ C + +N + +CWSCIFPLS+ I+V+ G + Sbjct: 5 LKLSLIAFASFSIISFFP-QKAEAVCTPNPAQIINTLGSLCWSCIFPLSVAGIQVAHGPM 63 Query: 58 PDT-ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTA 116 PD + PI ICPAPPPLF RIG+ IGY+EP + D + P C + LGF +P Sbjct: 64 PDPQGSVGSPICICPAPPPLFIRIGIPIGYFEPNRMIDSVKDPYCFMGLGFGIPELVGAG 123 Query: 117 QGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSL 176 +G K D FY H+Y YP+ L+I+T C+ G +DIAY++E+DP W D L Sbjct: 124 KG-TKGDGNDRTRVFYQSHYYIYPVIEILSILTDFICMSIGGIDIAYMTEVDPLWQDDEL 182 Query: 177 TTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPL 236 T ++NPEA++F NPI+ +C AD+++S N+ LD LFWC GS G+ YP +G ++ + Sbjct: 183 TALINPEALLFGNPISNLSCMADSVSSMANVTLDPLFWCKGSWGNAYPLSGNTGSKD-YV 241 Query: 237 QSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHP 296 + + V+ M +KLHR+ ++ E+ G+ +C E+P PI K +R Q+ P Sbjct: 242 EDAASVAAGMIYKLHRELILWESAGQL-GLCGEFPMPIWRKSSYRLQITAPIPHP-MGMS 299 Query: 297 FGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 G+S W KN P+ NF +L+++KR C Sbjct: 300 IGQSGILWSFAKNLPSLGDNFSFLLFKKRECCMF 333 >UniRef50_Q2LU05 Conjugal DNA transfer protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU05_SYNAS Length = 339 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 119/326 (36%), Positives = 178/326 (54%), Gaps = 10/326 (3%) Query: 10 LFLFAGHVPAASADSACE-GRFVNPITDICWSCIFPLSLGSIKVSQGKVPD--TANPSMP 66 F+ A A + C G +NP+TD+CW CIFP+S+ I++ G V + MP Sbjct: 19 FFVLLILFHAVGAQAVCRSGIPLNPVTDLCWQCIFPVSIAGIEIIPGPVENNVPDLSGMP 78 Query: 67 IQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQ 126 + CPAPPPLF RIG+ + +WEP + + P C +LGF L A G G +++ Sbjct: 79 VCACPAPPPLFIRIGIPVSFWEPARYVETVKDPYCFPSLGFGLTAAGGFLGGGSQEQGNA 138 Query: 127 V--NGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEA 184 F H++ YP+ + ++T C+E D+AYL+E+DP W + L IL PE+ Sbjct: 139 SVDTSTFAQAHYFIYPVWSIMELLTDFACIEHSGFDVAYLTEVDPLWQNDILAFILEPES 198 Query: 185 VIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSE 244 ++F NPIAQ AC AD++++ + LFWC GS GS YP G V N+ + L ++ ++ Sbjct: 199 ILFGNPIAQTACIADSVSTNAGFSMSPLFWCIGSGGSAYPLTGHV-NDDNELMANSTIAA 257 Query: 245 RMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRW 304 RM +KL R+G++ +T +C P+PI K WR + D CHPFGR+ W Sbjct: 258 RMVYKLAREGLVCDT---ALNLCACVPTPIWVKHNWRMHVAKPVRDF-MCHPFGRTGLIW 313 Query: 305 ETGKNPPNTKKNFGYLMWRKRNCVFL 330 KNPP NF + ++R+R+C Sbjct: 314 GALKNPPLVGDNFVWQLFRRRSCCAF 339 >UniRef50_Q6MB91 Putative F pilus assembly protein traU n=2 Tax=Parachlamydiaceae RepID=Q6MB91_PARUW Length = 311 Score = 355 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 115/302 (38%), Positives = 172/302 (56%), Gaps = 9/302 (2%) Query: 31 VNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPM 90 +NP TD+CW C+FPL++ + V+ G PD + + I C PP R+G+ + +WEP+ Sbjct: 1 MNPFTDVCWECVFPLTVSGVSVTPGH-PDLSKSNKRICTCAGVPP---RVGIPLTFWEPL 56 Query: 91 ALTDVTRSPGCMVNLGFSLPAFGK-TAQGTAKK-DEKQVNGAFYHVHWYKYPLTYWLNII 148 L DVTR +V LG +GT + + YHVHWY +PL LN++ Sbjct: 57 NLVDVTRHAYRLVGLGGVSVGSDSIKNRGTVSVLGDGPAQTSVYHVHWYHFPLLSLLNLL 116 Query: 149 TSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMP 208 T C+E GD+D+ YLSE+DP W D +L I+NPEA +F +P+AQ +C AD ++ N P Sbjct: 117 TDFICVEQGDVDLPYLSELDPLWNDDTLALIVNPEAALFNSPLAQVSCIADCSMASLNHP 176 Query: 209 LDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCN 268 +D LFWCAG +GS+YP G V++ SP+Q+S L+ +R+ KLHR ++ C Sbjct: 177 IDELFWCAGCEGSLYPLTGVVAHHLSPIQASYLLVQRLIAKLHRMFLLKGY--DKGEFCE 234 Query: 269 EYPSPILPKERWRYQMVNMYPDSGQ-CHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNC 327 PIL K ++ ++ P + CH G+S W GK+ P ++F YL+W K++C Sbjct: 235 AQMMPILKKTLYKTHLIYPIPQTSGLCHALGKSDLLWGIGKSFPIQGEDFVYLIWSKKHC 294 Query: 328 VF 329 Sbjct: 295 CL 296 >UniRef50_A2SNI5 Conjugal DNA transfer protein n=3 Tax=Burkholderiales RepID=A2SNI5_METPP Length = 353 Score = 346 bits (887), Expect = 9e-94, Method: Composition-based stats. Identities = 106/318 (33%), Positives = 154/318 (48%), Gaps = 19/318 (5%) Query: 25 ACEGRFVNPITDICWSCIFPLSL-GSIKVSQGKVPDTANP-SMPIQICPAPPPLFRRIGL 82 C+G F N ITD+CWSC FPL L G D A+ + C +PP +G+ Sbjct: 36 MCQGSFPNLITDVCWSCTFPLKLFGQAAFDSAGGEDYASSDKTSVCTCKSPPT----VGI 91 Query: 83 AIGYWEPMALTDVTRSPGCMVNLGFSLPAFG------KTAQGTAKKDEKQVNGAFYHVHW 136 +WE +TDVT +PGC LG + G + Q +F V+ Sbjct: 92 PTSFWELNQMTDVTTTPGCFPMLGGAKVNVGVNADAYGHNGNNEQGGMAQARESFRQVNL 151 Query: 137 YKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGAC 196 Y P Y + + C++ +DI ++S DPT D L IL P A F + +A GA Sbjct: 152 YINPAMYIMGAVLDNSCMDNRGIDIPWVSFADPTHNDEELANILTPYAFPFGSMVAIGAM 211 Query: 197 AADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMI 256 +ADA+A+ P+ +FW AGS G MYP G S QS+ L + R+ KLH G Sbjct: 212 SADAVAATAGFPIPEIFWAAGSFGPMYPLTGTNQAHLSNEQSARLQTTRVLAKLHAAGTQ 271 Query: 257 METIGKNNAVCNEYPSPILPKERWRYQMVNMYPDS-----GQCHPFGRSVTRWETGKNPP 311 G N+A+C+ YP I+ K +++ Q + P + C P GR+ E+G P Sbjct: 272 WAAAG-NDAMCSYYPQIIMDKRQYKLQRLYPRPQTEKINGKCCDPIGRTTILTESGTEAP 330 Query: 312 -NTKKNFGYLMWRKRNCV 328 +T ++FGY ++RKR+C Sbjct: 331 LSTFRDFGYAIFRKRDCC 348 >UniRef50_Q19NQ7 TrhU n=9 Tax=Enterobacteriaceae RepID=Q19NQ7_ECOK1 Length = 386 Score = 344 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 106/338 (31%), Positives = 166/338 (49%), Gaps = 17/338 (5%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 M M VP A SA G + I +ICWSCIFP+ + I G P+ Sbjct: 51 MLSLSIPGMAMAADAGVPGAMCQSA--GVWQGLIKNICWSCIFPMRIMGI----GAAPEG 104 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA 120 A PS P C + IG + +++P+ + +V +SP C L ++ + G + Sbjct: 105 AAPSRPGCYCTDQNGV-PEIGWQLSFFQPVKIVEVVKSPWCSPFLEGTMLQKSQFDIGKS 163 Query: 121 KKDE--KQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMD--IAYLSEIDPTWTDSSL 176 ++ FY VH +++P+ L ++ C +D + Y+SE+DP W L Sbjct: 164 NTNQPMTATEAGFYDVHLWEFPIMTMLKLLIIGECTAEPYIDASLTYISEVDPMWESDLL 223 Query: 177 TTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPL 236 T +LNPEAV+FANPIA CAAD +A ++CAG G++YP G + + Sbjct: 224 TLVLNPEAVVFANPIASMVCAADCVAVTAGKDNLAAYFCAGCDGNLYPLTGHIYANDDAV 283 Query: 237 QSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSG---Q 293 ++S L+++R+ KLHRQGM+M T+G +A+C + P+ ++R M+ P++ Sbjct: 284 RTSSLITQRLLTKLHRQGMLMRTMGA-DAMCEKTWEYFTPRSQYRLSMLFPTPEAKGPDC 342 Query: 294 CHPFGRSVTRWET--GKNPPNTKKNFGYLMWRKRNCVF 329 CH G SV W T G N+ Y++WR +C Sbjct: 343 CHRLGDSVHDWSTLKGGRKKIGNDNYVYMLWRYNDCCV 380 >UniRef50_C4NVV3 TraU n=27 Tax=Gammaproteobacteria RepID=C4NVV3_ECOLX Length = 335 Score = 339 bits (870), Expect = 7e-92, Method: Composition-based stats. Identities = 115/335 (34%), Positives = 172/335 (51%), Gaps = 9/335 (2%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFV---NPITDICWSCIFPLSLGSIKVSQGKV 57 M +++ +M V + SAD C+ V ITDICWSCIFP+ + + +S G Sbjct: 1 MMQKILRIMAVSAVFWVGSVSADPGCQNAEVIGGKLITDICWSCIFPIKVAGVPISGGGG 60 Query: 58 PDTA-NPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTA 116 + S P+ +C + R G+ WEP L + R PGC L F +T Sbjct: 61 SFPSEAVSNPLCMCEDNLGV-PRPGVTTSMWEPARLVEFQRVPGCSSVLNGVRFPFDRTN 119 Query: 117 QGTAKKDEKQVNG-AFYHVHWYKYPLTYWLNIITSLGCLEGG--DMDIAYLSEIDPTWTD 173 QG + +F H H+Y +PL L++ C G D+DI Y+SE+DPTW + Sbjct: 120 QGHHGMGDMDGGDGSFMHYHYYAFPLLVMLDLFIKQTCNADGYMDLDIMYMSELDPTWNN 179 Query: 174 SSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNES 233 L NPEA ANPIA AC ADA++S PL LFWCAGS G++YPF+G + Sbjct: 180 DELAFFTNPEAAAVANPIAAAACTADAVSSTAGKPLKQLFWCAGSWGTLYPFSGNQNGGK 239 Query: 234 SPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQ 293 ++ S L+S R+ LHR+G+ +T+G + A+C SP LPK ++++ +++ P++ Sbjct: 240 GVIRDSSLLSTRVLAALHRRGLAWKTMG-SEAMCRGVISPTLPKTQYKFTLLHPVPETNS 298 Query: 294 CHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCV 328 H G S W + P ++ Y +WR +C Sbjct: 299 SHVIGESTLTWGLARTIPAIGQDPIYTIWRWNDCC 333 >UniRef50_Q8L271 Pilus biogenesis protein n=2 Tax=Enterobacteriaceae RepID=Q8L271_PROVU Length = 358 Score = 329 bits (844), Expect = 7e-89, Method: Composition-based stats. Identities = 93/308 (30%), Positives = 148/308 (48%), Gaps = 15/308 (4%) Query: 32 NPITDICWSCIFPLSLGSIKVSQ-GKVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPM 90 TD+CWSCIFP+ + + G VP+ A + C ++ G+ WEP Sbjct: 52 KLFTDVCWSCIFPIKVAGATIGPSGSVPNDAATGS-VCACADGLGVY-HPGIMSALWEPR 109 Query: 91 ALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNG-----AFYHVHWYKYPLTYWL 145 ++TR+PGCM +LG + G Q + D + +FY+ H Y PL L Sbjct: 110 RFIELTRTPGCMSSLGGAKLNLGSELQYGTQTDSAKDERQRAAISFYNAHMYAMPLLRML 169 Query: 146 NIITSLGCLEGG--DMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIAS 203 ++ C D DI +EIDPTW +S+L NPE+ AN +AQ AC +A A Sbjct: 170 DLYLPGSCNADPYSDFDIISFTEIDPTWNNSALAFFQNPESAAVANIVAQQACTVEAAAQ 229 Query: 204 AFN-MPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGK 262 P L+WCAGS G YP G V +P +++ L + R HR+G+ ++G Sbjct: 230 FAGAQPQSALWWCAGSWGGQYPLTGSVRTMDTP-RTTSLAATRQLAVEHRRGLAYRSVG- 287 Query: 263 NNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWETG--KNPPNTKKNFGYL 320 N+ C P +PK++++ M P++ + H G S +W+ G + P ++ Y+ Sbjct: 288 NDVACRAKIYPTIPKQQYKMNMFYPTPETKKGHNIGESPYKWQGGSFRYPTGMGQDSVYM 347 Query: 321 MWRKRNCV 328 +++ +C Sbjct: 348 IFQWTDCC 355 >UniRef50_A9AU19 TraU family protein n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AU19_BURM1 Length = 337 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 104/343 (30%), Positives = 168/343 (48%), Gaps = 25/343 (7%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKV---SQGKV 57 M+ +++ +G+ A+A + C G F N ITD+C+ CIFP+S+ + G Sbjct: 1 MRLWASVVLALCLSGN---ANAQALCNGSFPNLITDVCYDCIFPISIMGGFINMGVSGDD 57 Query: 58 PDTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGF-------SLP 110 DT P+ +C +G + +WEP + D T PGCM LG + Sbjct: 58 YDTGASHFPVCVCANNLA----VGTPVSFWEPRYMVDTTTKPGCMPLLGGIDIKTPYNAA 113 Query: 111 AFGKTAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPT 170 +G A K AF V+ Y P+ L ++ + CL+ D+ +LS DPT Sbjct: 114 EYGAENVTNAAISGK-RKAAFMQVNEYVNPIMSALGVVVNNPCLDNRSFDVPFLSWADPT 172 Query: 171 WTDSSLTTILNPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVS 230 W D +L+ +L P A FA + A DAI++ F P+++LFW AG+ G MYP NG V+ Sbjct: 173 WNDDALSLMLTPYAYPFAGIPSIAAELPDAISATFGFPMEILFWVAGAWGPMYPLNGNVA 232 Query: 231 NESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAV--CN--EYPSPILPKERWRYQMVN 286 ++P Q S L+ R+ KLH + N+A+ C P ++ K +++ V Sbjct: 233 IANTPEQVSHLMIARLFAKLH-AAGAAQATAGNDALQSCGALGVPQLVMDKRQYKTNRVF 291 Query: 287 MYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 +PD+ C P GR + E G P K++GY+++++++C Sbjct: 292 PFPDNK-CTPIGRPLAFQEIGAARP-QDKDYGYIIFQRKDCCA 332 >UniRef50_C1SHD7 TraU protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHD7_9BACT Length = 333 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 104/347 (29%), Positives = 164/347 (47%), Gaps = 31/347 (8%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVP-- 58 MK+ L ++ L A SA + C G ++PIT + W+C P+S+G I + P Sbjct: 1 MKKILIIIFLL------SANSAFALCAGPMLDPITRVRWNCFLPISIGGIPIGTSGNPLA 54 Query: 59 DTANPSM----PIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGK 114 D A+ SM P+ +C P P RIG+ +GY EP+ + + + P C LGF + Sbjct: 55 DMADRSMGTQSPVCLCMDPLP---RIGITLGYREPIRIIESVKDPFCFPTLGFGM--SSS 109 Query: 115 TAQGTAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEG--------GDMDIAYLSE 166 K + F + H + + + I T L C++ G + IAY+SE Sbjct: 110 AWGSGVKGRNSKPAKDFTNTHMFIFLPFTMMEIFTDLICMQTDSKYTGVLGGLSIAYMSE 169 Query: 167 IDPTWTDSSLTTILNPEAVIFANPIAQGAC-AADAIASAFNMPLDVLFWCAGSQGSMYPF 225 D T +L PE V+FANP+A AC D+IAS + L+WCAG+ S++P Sbjct: 170 FDITKRSDQAALLLTPEVVLFANPLAIMACQIPDSIASLAEYTIPPLYWCAGNH-SVFPT 228 Query: 226 NGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMV 285 + + S+ ++S + + ++ F +HR + + G +C+ YP PI K ++R Q Sbjct: 229 SNNTMSMSNFTEASEVNASKLIFSMHRTLQLWGSFGA-QGLCSYYPMPIWNKMQYRLQTA 287 Query: 286 NMYPDSGQCHPFGRSVTRWETGKNPPN--TKKNFGYLMWRKRNCVFL 330 PD C G+ W NPP N +++WRKR+C Sbjct: 288 MPVPD-NFCRRLGQPSIVWNRFLNPPGAPNNDNMVFILWRKRDCCAF 333 >UniRef50_B7XGS0 Putative pilus assembly protein n=2 Tax=Pseudomonas RepID=B7XGS0_PSEPU Length = 350 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 98/346 (28%), Positives = 157/346 (45%), Gaps = 22/346 (6%) Query: 2 KRRLWLLMLFLFAGHVPAASADSACEGRF---------VNPITDICWSCIFPLSLGSIKV 52 K L++ +P +AD+A G TDICW+C+FP+ + +++ Sbjct: 5 KVIAAALLMIAGMFSLPGIAADTASSGEVMCEDSGLFGPKLFTDICWACLFPIRVSGVQI 64 Query: 53 SQGKVPDTANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAF 112 + G P A M IC + G+ WEP + + R PGC LG Sbjct: 65 TPGTAPAKAT-KMVFCICQEGSSSIYKPGIITAMWEPARMVETVRKPGCSPTLGGVTLPL 123 Query: 113 G-KTAQGTAKKDEKQVN----GAFYHVHWYKYPLTYWLNIITSLGCLEGG--DMDIAYLS 165 G K + G ++D G+FYH H Y +PL L++ T C G D+DI + Sbjct: 124 GNKRSYGRLRQDNSTQTGQAAGSFYHAHLYAFPLLQILDLYTPTKCNPDGYLDLDIISFT 183 Query: 166 EIDPTWTDSSLTTILNPE-AVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYP 224 EIDPTW + +L +PE A + A A+ +A PL+ L+WC G+ GS+YP Sbjct: 184 EIDPTWNNGTLAFFQHPESAAVANPIAIAACAAESALVTARKEPLESLWWCTGTWGSIYP 243 Query: 225 FNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQM 284 F G V+ +++ L++ R+ + HR+G+ T+G + VC P +PK +++ Sbjct: 244 FAG-VTVAQDANRTTALLAARVIAQQHRRGLARRTMG-DENVCKAGIYPTIPKSQYKVTQ 301 Query: 285 VNMYPDSGQCHPFGRSVTRWETG--KNPPNTKKNFGYLMWRKRNCV 328 + + G WE G ++ P T + Y+ WR +C Sbjct: 302 FWPKSQNSRAMWLGEPPQTWEGGPSRHVPGTGNDAMYMFWRWTDCC 347 >UniRef50_Q1NGS7 Conjugal DNA transfer protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGS7_9SPHN Length = 324 Score = 306 bits (783), Expect = 9e-82, Method: Composition-based stats. Identities = 102/329 (31%), Positives = 160/329 (48%), Gaps = 17/329 (5%) Query: 8 LMLFLFAGHVPAASADSACE-GRFVNPITDICWSCIFPLSLGSIKVSQ----GKVPDTAN 62 ++ G PA + S CE G NPIT + W+CIFP+++G ++V K D + Sbjct: 1 MLSLASIGSTPAHA--SKCEAGTIFNPITKVRWNCIFPITIGGVRVGTFDKLDKELDAQS 58 Query: 63 PSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAK- 121 S P+ C + G+ + +W P + DV PGCM+ +G L G QG+ Sbjct: 59 ASKPLCACRKGATFW--FGVKVSFWSPNRMIDVVTEPGCMMAVGADLLPTGGRLQGSQSS 116 Query: 122 -KDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL 180 D F +H+Y P+ L++ T L C + D+A ++E+ PTW +L I+ Sbjct: 117 IADGTNSQKLFAQMHYYISPVWKMLDMFTDLPCTQDDGFDVAMITEVLPTWQSGTLGAII 176 Query: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 PEA++F NP A AC AD+ A+A +D LFWC GS G+ YP G + S +++ Sbjct: 177 QPEAILFGNPAAGLACMADSAAAAAGKVIDPLFWCMGSWGATYPVAGDIHFGDS-VEAWA 235 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 ++ R F + R G + TI + C+ PI K R++ Q++ G+C GR Sbjct: 236 GLAARGTFMMGRLGAL--TISSADG-CSFKAQPIWTKSRYKLQIMEPV-KGGKCVNIGRP 291 Query: 301 VTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 W +GK+ P N ++ + K C Sbjct: 292 GALWSSGKHAPGK-DNAQFMSFEKVICCA 319 >UniRef50_A0L2Z2 TraU family protein n=1 Tax=Shewanella sp. ANA-3 RepID=A0L2Z2_SHESA Length = 359 Score = 303 bits (775), Expect = 8e-81, Method: Composition-based stats. Identities = 96/360 (26%), Positives = 160/360 (44%), Gaps = 59/360 (16%) Query: 23 DSACE--GRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQICPAPPPLFRRI 80 DS C G F N I CWSC P +L VP AN S + C + + Sbjct: 3 DSVCPDAGYFSNLINSFCWSCTLPFNLAGF---SDNVPKGANSSR-LCSCSDALGV-PEL 57 Query: 81 GLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNG--AFYHVHWYK 138 G+++GYW P L +V+ +P C LG +L T +G A + Q +F H ++ Sbjct: 58 GVSLGYWSPDHLVEVSATPWCSPTLGGTLLQNDMTMRGRASNPDTQSAETVSFLHYNYII 117 Query: 139 YPLTYWLNIITSLGCLEGG---DMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGA 195 P+ L + C D+DIAY+S +D T+ +S+L+ + P+A+ ANP+ + Sbjct: 118 NPVFKMLGLFLLPECDTSPGYFDLDIAYMSILDVTYENSALSFLFTPDAIPIANPVGRAI 177 Query: 196 CAADA-IASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQG 254 C AD I ++ + L++CAG G +YP G++ ++ ++++ L++ R LHR+G Sbjct: 178 CVADGMITASSGSANEALWFCAGLDGPLYPLTGFIGADNDFIRNTQLITTRSLAALHRRG 237 Query: 255 MIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSG---------------------- 292 + +T GK A+CN SP++PK +++ M+ P++ Sbjct: 238 LARKTYGK-EAMCNAEYSPMIPKAQYKISMMYPSPEANPAAASAVKPTKAFNIEDLQNPE 296 Query: 293 ---------------------QCHPFGRSVTRWETGKNPPNTKKN--FGYLMWRKRNCVF 329 CHP G W +G+ P K+ Y ++R +C Sbjct: 297 TGDYDNSEDKNKSTLDGSWDECCHPLGWPTIWWGSGRKSPGNGKDQHAVYSIFRYTDCCV 356 >UniRef50_A5KZG2 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZG2_9GAMM Length = 233 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 108/233 (46%), Positives = 149/233 (63%), Gaps = 4/233 (1%) Query: 102 MVNLGFSLPAFGKTAQGTAKKD--EKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDM 159 MVN+G L G A+ D K AFY VHWYKYP+ YWL ++ S C+ + Sbjct: 1 MVNMGMQLSNDNSQKIGGAQHDSSAKTSGNAFYQVHWYKYPVIYWLQLMQSAACMATDNF 60 Query: 160 DIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAFN--MPLDVLFWCAG 217 D+AYL+E+DP W D ++ ILNPEA++F +PI Q +C +A+A+ +P D LFWC G Sbjct: 61 DVAYLTELDPFWDDDEMSFILNPEAILFGHPITQLSCITEAMATTTGRVLPFDALFWCLG 120 Query: 218 SQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPK 277 SQGS+YP G + + Q L+ ER FK+HRQG++ ET G++ AVC ++P PILPK Sbjct: 121 SQGSVYPLTGNSAYSHTGPQVGTLMLERFNFKMHRQGVVWETRGEDGAVCYQWPEPILPK 180 Query: 278 ERWRYQMVNMYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVFL 330 R+RYQ+ D+ C+P+G + + WE GK+ P T NFG++ WRKRNCVFL Sbjct: 181 SRYRYQLSAPIGDAAHCYPYGTTSSLWEQGKDNPTTGGNFGFVNWRKRNCVFL 233 >UniRef50_Q4LC37 TraU protein n=2 Tax=Sodalis glossinidius RepID=Q4LC37_SODGL Length = 256 Score = 298 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 173/307 (56%), Positives = 196/307 (63%), Gaps = 60/307 (19%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDT 60 MK L +L+L G P A AD+AC+GRFVN ITDICW C+FP+S+GS++V +G VPDT Sbjct: 10 MKAWLSVLVLLAGLGLSPTAGADAACQGRFVNLITDICWRCLFPISIGSVQVGKGDVPDT 69 Query: 61 ANPSMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA 120 NP PIQ CP PP LF+RIGLAIGYWEP Sbjct: 70 GNPGSPIQFCPMPPLLFQRIGLAIGYWEP------------------------------- 98 Query: 121 KKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTIL 180 ++ + GCLE GDMDIAYLSE+DPTW DSSLTTIL Sbjct: 99 ---------------------MAMTDVTRTPGCLELGDMDIAYLSELDPTWVDSSLTTIL 137 Query: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 NPEAVIFANPIAQG CAADAIAS F++PLDVLFWCAGSQGSMYPFNGWVS E SPLQSS+ Sbjct: 138 NPEAVIFANPIAQGVCAADAIASGFHLPLDVLFWCAGSQGSMYPFNGWVSKEISPLQSSV 197 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYPDSGQCHPFGRS 300 LV+ RMAFKLHRQG I ETIGK+ VC ++PSPI+PK RWRYQMV C P Sbjct: 198 LVTARMAFKLHRQGQIWETIGKDREVCYKFPSPIMPKARWRYQMV--------CTPTAPV 249 Query: 301 VTRWETG 307 RW Sbjct: 250 AIRWGAA 256 >UniRef50_B7J844 Conjugal transfer protein TraU, putative n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J844_ACIF2 Length = 416 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 91/394 (23%), Positives = 148/394 (37%), Gaps = 72/394 (18%) Query: 7 LLMLFLFAGHVPAASADSACE--GRFVNPITDICWSCIFPLSLGSIKVSQG--KVPDTAN 62 L++ F A + C G F I +CWS +FPL + + G VP+ A+ Sbjct: 14 LVLTFAVPALATGAQVATLCPDAGVFNELIGGVCWSALFPLRIAGMTWFGGNSGVPNGAS 73 Query: 63 PSMPIQICPAPPPL-FRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQG--- 118 + + L +G+ IGYW+P L + P C LG T Sbjct: 74 SGFMCECGGSWSHLQLPTVGVQIGYWQPTMLMEAVSHPFCSPVLGGVSLQPDSTVGSQWT 133 Query: 119 -------TAKKDEKQVNGAFYHVHWYKYPLTYWLNIITSLGCLEG-GDMDIAYLSEIDPT 170 N F++VH + +PL + + C G M++ +SE+ PT Sbjct: 134 GSWGGNVGTGVSTGNKNSTFFNVHLWTFPLITMMQLANIPDCNTGYSGMNLMLMSEVFPT 193 Query: 171 WTDSSLTTILNPEAVIFANPIAQ-GACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWV 229 W D L+ + +PE +++ NPI GA A S P+D +W AG G +YP G Sbjct: 194 WNDDLLSFLASPEELLYDNPIGLLGATEECAQESLGAQPIDDEYWTAGCWGLLYPMVGSN 253 Query: 230 SNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWRYQMVNMYP 289 + P+Q+S + RM R G + T+G N+ +C + +LPK ++R+Q++ Sbjct: 254 LGGNDPIQASNIDVARMIAMGFRLGFLERTMG-NSTLCGPRRTYVLPKAQYRFQILFPND 312 Query: 290 DSG------------QCHPFG--------------------------------------- 298 ++ P G Sbjct: 313 ETNQEPNASVTAPNVSAQPSGGSMPPANYVTPAASNQGTLPQNGGVNIQAPPTQSGECTH 372 Query: 299 ---RSVTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 ++ +W P T N+ YL+W+ NC Sbjct: 373 WMGQTPFQWGEWDTQPATGGNYVYLVWQWTNCCL 406 >UniRef50_B3CR07 Putative conjugative transfer protein TraU n=1 Tax=Orientia tsutsugamushi str. Ikeda RepID=B3CR07_ORITI Length = 193 Score = 242 bits (619), Expect = 8e-63, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 117/195 (60%), Gaps = 4/195 (2%) Query: 8 LMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPI 67 ++ + A A + C GRFVNPITD+CW C+FP+++ KV +PDT I Sbjct: 1 MLAIVMAITANNCYAAAGCVGRFVNPITDVCWKCLFPITIAGFKVVSSSMPDTNPSGRLI 60 Query: 68 QICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQV 127 +CP P G+ +G+WE + L DVT+SP CMV+LG +FG AQ K ++ Sbjct: 61 CLCPKPGIPVPVPGIPVGFWELVRLVDVTKSPMCMVSLGG--FSFGSAAQKGMK--DEAE 116 Query: 128 NGAFYHVHWYKYPLTYWLNIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIF 187 AFYH+HWY YP+ YWL I+ CLE +DIAYL+E DP W+D + +TILNPE ++F Sbjct: 117 GSAFYHIHWYVYPVIYWLKILLDFICLEMAAVDIAYLTEFDPLWSDDAKSTILNPETLLF 176 Query: 188 ANPIAQGACAADAIA 202 N A AC AD ++ Sbjct: 177 QNVAAYQACIADCMS 191 >UniRef50_C0QUV2 Putative TraU n=1 Tax=Persephonella marina EX-H1 RepID=C0QUV2_PERMH Length = 324 Score = 239 bits (611), Expect = 7e-62, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 140/347 (40%), Gaps = 55/347 (15%) Query: 10 LFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANPSMPIQI 69 + L + + +A C +NPI+ + WS F ++ + Sbjct: 1 MTLISSFSISLAATPPC----INPISTVDWS-FFADTIEF---------------KGTCV 40 Query: 70 CPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNG 129 C + ++G+ + EP+A + + G + F + + G Sbjct: 41 CSTSGAI--KVGVKLQLAEPIAFIETPNKAWDFICFGSTRDKFSVQKKDGTNLGK---KG 95 Query: 130 AFYHVHWYKYPLTYWLNIITSLGC-LEGGDMDI--AYLSEIDPTWTDSSLTTILNPEAVI 186 A + H+ KYP+ LNI C + + DI LSEI+P D L I P ++ Sbjct: 96 AKTNAHYIKYPVFGVLNITFDNLCTMHDLEFDIIPTGLSEINPLLWDDELAMIAQPWKLL 155 Query: 187 FANPIAQGACAADAIASAFNMPLDV---------LFWCAGSQGSMYPFNGWVSNESSPLQ 237 FANPIAQ C AD ++S+ P +V LF+CAG G++ P + S ++ Sbjct: 156 FANPIAQVLCLADCVSSSVVFPSNVDTFETVRNGLFYCAGCWGAIQPNTTTTRGKDSVVE 215 Query: 238 SSL-------LVSERMAFKLHRQ--GMIMETIGK------NNAVCNEYPSPILPKERWRY 282 S+L L+ E + K++++ G+ + ++ C P++ K ++ Sbjct: 216 SALTAVKLIDLLHESLQLKVYKEVSGLGWASNFSSGFPIPSDVACQPKFFPVIVKSQYWL 275 Query: 283 QMVNMYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 + + P G +W K P+ ++N + +WR RNC Sbjct: 276 NLSYPV--AWDAIPIGDFPPKWSWFKKYPSKEEN-IWTIWRIRNCCL 319 >UniRef50_B3SF21 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SF21_TRIAD Length = 152 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 50/114 (43%), Positives = 69/114 (60%) Query: 146 NIITSLGCLEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQGACAADAIASAF 205 ++ C+E +DIAY+SE DP W + L ILNPEA +F NPIAQ AC D I + Sbjct: 39 ELLADFICMEQMSIDIAYMSEFDPLWGNDKLNVILNPEAALFGNPIAQTACIFDCIKATT 98 Query: 206 NMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMET 259 D+LF CAG GS+YPF G + + +Q+S L+ ER+ +LHR G+ +T Sbjct: 99 GFSSDMLFHCAGCNGSLYPFGGSIEHTQGGVQASTLIVERLLARLHRVGLAWDT 152 >UniRef50_A2UW00 Putative uncharacterized protein n=1 Tax=Shewanella putrefaciens 200 RepID=A2UW00_SHEPU Length = 337 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 95/305 (31%), Gaps = 75/305 (24%) Query: 65 MPIQIC----PAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTA 120 P +C P + R + ++ P ALT+V L L G+A Sbjct: 54 KPTGMCIWLYVNWPVVSIRYSTLVEFYSPDALTEVYHKQSNTPLLSGKLQNSVSNTLGSA 113 Query: 121 KK-----------DEKQVNGAFYHVHWYKYPLTYWLNIITSLG------CLEGGD-MDIA 162 + F H P+ N + C + + Sbjct: 114 TAGSLGGLPLKLENNSSSTEGFRSAHLMGNPMLSLHNSVLGGVLGNVGYCESPVNPLQTY 173 Query: 163 YLSEIDPTWTDSSLTTILNPEAVI-FANPIAQGACAADAIASAFNMPLDVLFWCAGSQGS 221 Y S++D W + I EA++ F N + + D A GS Sbjct: 174 YHSDLD--WFEWRAGFI---EALLYFPNMLKR---VYDGSAM---------------WGS 210 Query: 222 MYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKERWR 281 +YP GW +N SSP S+ + S R + ++ + + +P E R Sbjct: 211 LYPRVGWGTNNSSPFISAAITSLR----------AANIVSGYDSFSSNHIQVPMPDENPR 260 Query: 282 Y-----------------QMVNMYPDSGQCHPFGRSVTRWETGKNPPN-TKKNFGYLMWR 323 + + + P + C S E G N P +N+ +++WR Sbjct: 261 FYYPPNTKPKVDIENGKWKALWPAP-TDSCSVLPISGITSEIGTNEPYVQNRNYVFMLWR 319 Query: 324 KRNCV 328 K C Sbjct: 320 KYTCC 324 >UniRef50_Q2G6B7 Putative uncharacterized protein n=4 Tax=Sphingomonadales RepID=Q2G6B7_NOVAD Length = 371 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 11/141 (7%) Query: 4 RLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGKVPDTANP 63 L + + + AA+ C G+FVNPITDICWSC+FP+S+G +K+ PD +NP Sbjct: 15 LLLTSLSVVSSAPAQAAAGPGRCTGKFVNPITDICWSCLFPISIGGLKIWPSSRPDPSNP 74 Query: 64 SMPIQICPAPPPLFRRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFG-----KTAQG 118 ++P+ +C R G+A+G+WEP+ L DV+ P C VNLG G K+ G Sbjct: 75 ALPVCLCG------LRPGIAMGFWEPVRLADVSMKPWCFVNLGGMKLDPGFDIGFKSMAG 128 Query: 119 TAKKDEKQVNGAFYHVHWYKY 139 + + +HVHWY Y Sbjct: 129 PSAVGGATQYNSQWHVHWYAY 149 >UniRef50_B7LWZ0 Protein traU n=1 Tax=Escherichia coli 55989 RepID=B7LWZ0_ECO55 Length = 71 Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 58/68 (85%), Positives = 58/68 (85%), Gaps = 4/68 (5%) Query: 1 MKRRLWLLMLFLFAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGK---- 56 MKRRLWLLMLFL AGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQG Sbjct: 1 MKRRLWLLMLFLLAGHVPAASADSACEGRFVNPITDICWSCIFPLSLGSIKVSQGMGAEF 60 Query: 57 VPDTANPS 64 VP PS Sbjct: 61 VPSCTYPS 68 >UniRef50_A4A4E6 Secreted protein containing DUF1527 n=1 Tax=Congregibacter litoralis KT71 RepID=A4A4E6_9GAMM Length = 341 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 14/125 (11%) Query: 214 WCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQG------MIMETIGKNNAVC 267 W + G +YP GW + P +++ + ++R + R G I + + + Sbjct: 203 WPLQTWGGVYPRTGWTTQAEEP-KAAAINAQRAGDIVTRNGQPHIYDQIEPSSSSDQRIW 261 Query: 268 NEYPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTR----WETGKNPPNTKKNFGYLMWR 323 + P +QM+ + C FG + W G+ + ++ + +WR Sbjct: 262 SPGPLVEDDPATGEWQMLLPKAE-SSCAVFGTNDLASANGWGGGRVD--EEGDYAWNLWR 318 Query: 324 KRNCV 328 C Sbjct: 319 PYQCC 323 >UniRef50_Q3JDC6 Putative uncharacterized protein n=2 Tax=Nitrosococcus oceani RepID=Q3JDC6_NITOC Length = 340 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 14/125 (11%) Query: 214 WCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGM----IMETIGKNNAVCNE 269 W + G +YP GW + P +++ + ++R R G + T G ++ Sbjct: 203 WPLQTWGGVYPRTGWTTQSEEP-KAAAINAQRAGDIATRTGQPHIYVPITGGSSSGQRVW 261 Query: 270 YPSPILPK--ERWRYQMVNMYPDSGQCHPFGRSVTR----WETGKNPPNTKKNFGYLMWR 323 P P++ +QM+ ++ C FG + W +G+ + ++ + +WR Sbjct: 262 PPGPLVEDDPATGEWQMLLPKSEAT-CKVFGTNDLASLSGWGSGRVD--AQGDYVWNLWR 318 Query: 324 KRNCV 328 +C Sbjct: 319 PYSCC 323 >UniRef50_Q1ZJS4 Putative uncharacterized protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZJS4_PHOAS Length = 355 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 16/120 (13%) Query: 219 QGSMYPFNGWVSNESSPLQSSLLVSERMA------FKLHRQGMIMETIGKN---NAVCNE 269 G +YP G + +S+ ++ R+A LH + T G N + + + Sbjct: 231 WGDLYPRIGTAYQRDNS-KSAGTIASRVANIISSPQSLHIAQKLPITSGNNRTFDMLPGK 289 Query: 270 YPSPILPKERWRYQMVNMYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCVF 329 P + + +Q +C F K + +N+ + +WR+ C Sbjct: 290 EIRPNDERTAY-FQQNFPKDSDKKCRVFPHQKL-----KRIQSDTQNYVWTLWRRYKCCA 343 >UniRef50_C4X2G1 Putative uncharacterized protein n=11 Tax=Proteobacteria RepID=C4X2G1_KLEPN Length = 371 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 7/114 (6%) Query: 219 QGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGM--IMETIGKNNAVCNEYPSPIL- 275 G++YP G +S +++ ++++R+A + R G I + ++ PSPI+ Sbjct: 249 WGNIYPRAGAISQTHDY-KAAAVIAQRVADLVTRTGQPHIYTPLAASSRAGYWPPSPIIE 307 Query: 276 -PKERWRYQMVNMYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCV 328 + R+QM+ S C F +T + + + +WR C Sbjct: 308 GDSDNHRWQMLTPK-KSAACSVFPDGSAT-DTYADKLAEDGAYAWTLWRPYKCC 359 >UniRef50_B0UVG6 Putative uncharacterized protein n=9 Tax=Pasteurellaceae RepID=B0UVG6_HAES2 Length = 313 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 81/263 (30%), Gaps = 40/263 (15%) Query: 78 RRIGLAIGYWEPMALTDVTRSPGCMVNLGFSLPAFGKTAQGTAKKDEKQVNGAFYHVHWY 137 R I ++ P + G G + F + + Sbjct: 64 VRTSTKIKHYLPEMVVSSYNHDGQTPWTELQALNPGVKGGEYRSPQRQYSQLTFKNADAF 123 Query: 138 KYPLTYWLNII--TSLGC-LEGGDMDIAYLSEIDPTWTDSSLTTILNPEAVIFANPIAQG 194 +P ++ T C + +LS +D ++ + PEA+ + + Sbjct: 124 GHPQGAIGQLLGNTGYYCKTQTTPFMPYFLSGLDFFAWRENMPEMFYPEALTPG--MREV 181 Query: 195 ACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMA------F 248 D S G++YP +GWV+ ++S + +R+A Sbjct: 182 GRVGD------------------SWGNIYPRSGWVTQAHDY-KASATIVQRVADIVSRTA 222 Query: 249 KLHRQGMIMETIGKNNAVCNEYPSPILPKER---WRYQMVNMYPDSGQCHPFGRSVTRWE 305 + H +T G E+P + + + ++Q++ S C F Sbjct: 223 QPHIYFPAAKTGGA-----GEWPPGPVEEGQARTHKWQILYPQ-MSNTCSVFPNGGQTDT 276 Query: 306 TGKNPPNTKKNFGYLMWRKRNCV 328 N ++ + +WR +C Sbjct: 277 YSSQISNQG-DYAWALWRPYSCC 298 >UniRef50_A1TQT3 Putative uncharacterized protein n=2 Tax=Comamonadaceae RepID=A1TQT3_ACIAC Length = 431 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 6/113 (5%) Query: 218 SQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPK 277 + G +P G + P+++S +++ER+ ++R +Y K Sbjct: 312 TWGPTFPRTGEIIQAH-PVKASAVLAERVKSIIYRSAQPHIYAKVELQGTKDYVYFNEDK 370 Query: 278 ERWRYQMVNMYPDSGQCHPFG--RSVTRWETGKNPPNTKKNFGYLMWRKRNCV 328 +W QM++ + C FG S++ G ++ + + +W+ C Sbjct: 371 AQW--QMLHPNVWT-SCEQFGTNDSLSLTSWGDAQTDSADGYSWNLWKHYVCC 420 >UniRef50_Q5P8L2 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P8L2_AZOSE Length = 334 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 18/128 (14%) Query: 214 WCAGSQGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQG-------MIMETIGKNNAV 266 W A + G++YP G V + ++ + ++S+R+A + R G + G + Sbjct: 197 WPANTWGNVYPRTGEV-VQQHEVKGAAVLSQRIADFVTRSGQPHVYVPVSSGKRGVRDGQ 255 Query: 267 CNEYPSPILPKER----WRYQMVNMYPDSGQCHPFG--RSVTRWETGKNPPNTKKNFGYL 320 P P + W+ + CH FG +++ G ++ Y Sbjct: 256 LVWDPPPAMETNLLGGLWQMNVAVPT----GCHVFGLNDTLSPVSYGDAKTTQSGSYAYT 311 Query: 321 MWRKRNCV 328 +WR C Sbjct: 312 LWRPYACC 319 >UniRef50_D0FVV8 Conserved uncharacterized protein n=21 Tax=Enterobacteriaceae RepID=D0FVV8_ERWPY Length = 323 Score = 43.1 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 34/213 (15%) Query: 123 DEKQVNGAFYHVHWYKYPLTYWLNIITSL-GCLEGGDMDIAYL-SEIDPTWTDSSLTTIL 180 + N FY+ Y +P T + + C I Y S +D + + + Sbjct: 124 GMRSQNLHFYYAGAYGHPATKIIGGMVPGYSCDSAATPFIPYFVSALDALAWRTGVPESV 183 Query: 181 NPEAVIFANPIAQGACAADAIASAFNMPLDVLFWCAGSQGSMYPFNGWVSNESSPLQSSL 240 PEA+I + P + G++YP +G+V+ +S+ Sbjct: 184 YPEALIPG------------QREVGSTPSGNM------WGNVYPRSGFVTQTDGY-KSAA 224 Query: 241 LVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPILPKE-----RWRYQMVNMYPDSGQCH 295 +V +R+A + RQG + Y P E ++Q ++ S C Sbjct: 225 VVVQRVADIITRQGQLHVYNPLVGQRSAGYWPPGAVSENSGSKNHKWQRLSPR-LSQSCA 283 Query: 296 PFGRSVTRWETGKNPPNTKKNFGYLMWRKRNCV 328 F N+ + +W+ +C Sbjct: 284 VFPDVG-------GQIAQNGNYAWALWQPYSCC 309 >UniRef50_A9IG24 Putative uncharacterized protein n=62 Tax=Proteobacteria RepID=A9IG24_BORPD Length = 355 Score = 40.8 bits (94), Expect = 0.076, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 36/126 (28%) Query: 219 QGSMYPFNGWVSNESSPLQSSLLVSERMAFKLHRQGMIMETIGKNNAVCNEYPSPIL--P 276 G++YP G++ ++ ++++R + R+G + P+L P Sbjct: 236 WGNVYPRGGFLHQTDDH-KTGAVIAQRAGDVVTRRGQL------------HVYQPLLANP 282 Query: 277 KERW--------------RYQMVNMYPDSGQCHPFGRSVTRWETGKNPPNTKKNFGYLMW 322 ++ + ++Q + S C F RS + + + ++ + +W Sbjct: 283 RDGYWPAGALMEGDASTGKWQELTPV-LSSSCSVFPRSGSLTQA------QQGDYAWALW 335 Query: 323 RKRNCV 328 R C Sbjct: 336 RPYACC 341 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.139 0.475 Lambda K H 0.267 0.0425 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,250,679,817 Number of Sequences: 3077464 Number of extensions: 96002493 Number of successful extensions: 206952 Number of sequences better than 1.0e-01: 50 Number of HSP's better than 0.1 without gapping: 117 Number of HSP's successfully gapped in prelim test: 20 Number of HSP's that attempted gapping in prelim test: 206348 Number of HSP's gapped (non-prelim): 154 length of query: 330 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 201 effective length of database: 643,403,500 effective search space: 129324103500 effective search space used: 129324103500 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 93 (40.4 bits)