BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (159 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P46187 Sigma-E factor regulatory protein rseC n=137 Tax... 317 5e-86 UniRef50_B4F050 Sigma-E factor regulatory protein n=12 Tax=Enter... 159 4e-38 UniRef50_D0ZCZ8 SoxR reducing system protein n=2 Tax=Edwardsiell... 139 4e-32 UniRef50_C6CNL7 Positive regulator of sigma E, RseC/MucC n=8 Tax... 125 5e-28 UniRef50_Q57126 Putative uncharacterized protein Y1293 n=4 Tax=P... 99 4e-20 UniRef50_P44060 Uncharacterized protein HI0850 n=21 Tax=Haemophi... 98 7e-20 UniRef50_Q0I574 Possible positive sigma-E factor regulatory prot... 88 1e-16 UniRef50_A6VKY4 Positive regulator of sigma E, RseC/MucC n=3 Tax... 81 1e-14 UniRef50_D0I4M3 Sigma factor RpoE regulatory protein RseC n=1 Ta... 80 2e-14 UniRef50_A6FDN4 Putative uncharacterized protein n=1 Tax=Moritel... 80 2e-14 UniRef50_Q7VM35 Possible sigma-E factor regulatory protein n=1 T... 78 1e-13 UniRef50_C4LBZ5 Positive regulator of sigma E, RseC/MucC n=1 Tax... 77 2e-13 UniRef50_Q07YZ3 Positive regulator of sigma(E), RseC/MucC n=3 Ta... 74 1e-12 UniRef50_Q15R30 Positive regulator of sigma E, RseC/MucC n=1 Tax... 70 2e-11 UniRef50_Q2SL37 Sigma factor algU negative regulatory protein Mu... 69 4e-11 UniRef50_A4BBJ3 Positive regulator for alginate biosynthesis Muc... 69 4e-11 UniRef50_Q47WP1 Sigma-E factor regulatory protein RseC n=1 Tax=C... 69 5e-11 UniRef50_B8F3K6 Sigma-E factor regulatory protein n=7 Tax=Pasteu... 69 5e-11 UniRef50_Q5E311 Sigma-E factor regulatory protein RseC n=38 Tax=... 69 6e-11 UniRef50_Q2BJ04 Positive regulator for alginate biosynthesis Muc... 69 7e-11 UniRef50_C5S2D5 Sigma-E factor regulatory protein n=2 Tax=Actino... 68 1e-10 UniRef50_A6VUA3 Positive regulator of sigma E, RseC/MucC n=2 Tax... 67 1e-10 UniRef50_A0KGE9 Sigma-E factor regulatory protein RseC n=2 Tax=A... 67 3e-10 UniRef50_C5SBU1 Positive regulator of sigma E, RseC/MucC n=1 Tax... 66 5e-10 UniRef50_Q0A8Z6 Positive regulator of sigma E, RseC/MucC n=1 Tax... 65 7e-10 UniRef50_B5JX05 Positive regulator of sigma E, RseC/MucC n=1 Tax... 65 8e-10 UniRef50_C7RA51 Positive regulator of sigma E, RseC/MucC n=1 Tax... 65 1e-09 UniRef50_A1U2W9 Positive regulator of sigma E, RseC/MucC n=2 Tax... 64 1e-09 UniRef50_Q1N1C0 Sigma factor algU negative regulatory protein Mu... 64 1e-09 UniRef50_Q3IDL5 Putative regulator of sigma E (Sigma 24) factor ... 63 3e-09 UniRef50_Q12KH8 Positive regulator of sigma(E), RseC/MucC n=15 T... 63 4e-09 UniRef50_B4RVA9 Sigma-E factor regulatory protein RseC n=1 Tax=A... 63 4e-09 UniRef50_B8GPK5 Positive regulator of sigma E, RseC/MucC n=1 Tax... 62 4e-09 UniRef50_Q31HP7 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 62 5e-09 UniRef50_Q0VP14 AlgM protein n=2 Tax=Alcanivorax RepID=Q0VP14_ALCBS 62 6e-09 UniRef50_UPI0001AEB8D2 sigma-E factor regulatory protein RseC n=... 61 1e-08 UniRef50_A0Y589 Putative regulator of sigma E (Sigma 24) factor ... 59 5e-08 UniRef50_B7UYX7 Positive regulator for alginate biosynthesis Muc... 58 1e-07 UniRef50_C0N4S0 Positive regulator of sigma(E), RseC/MucC superf... 57 2e-07 UniRef50_UPI0000E11529 positive regulator of sigma E, RseC/MucC ... 57 2e-07 UniRef50_C5BRN1 Positive regulator for alginate biosynthesis Muc... 57 3e-07 UniRef50_C6P606 Positive regulator of sigma E, RseC/MucC n=1 Tax... 55 6e-07 UniRef50_B6BUJ9 Positive regulator of sigma(E), RseC/MucC superf... 55 8e-07 UniRef50_A0YCK5 Positive regulator for alginate biosynthesis Muc... 54 2e-06 UniRef50_B9ZJG2 Positive regulator of sigma E, RseC/MucC n=1 Tax... 54 2e-06 UniRef50_C1DQR8 Positive regulator for alginate biosynthesis Muc... 53 3e-06 UniRef50_Q1ZCS1 RNA polymerase sigma-70 factor n=1 Tax=Psychromo... 53 3e-06 UniRef50_A1SR27 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 52 8e-06 UniRef50_C7RTN3 Positive regulator of sigma E, RseC/MucC n=1 Tax... 52 8e-06 UniRef50_Q2W409 Positive regulator of sigma E activity n=2 Tax=M... 51 9e-06 UniRef50_Q47FZ1 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 51 1e-05 UniRef50_B3PJ98 Positive regulator for alginate biosynthesis Muc... 50 3e-05 UniRef50_D0KYN1 Positive regulator of sigma E, RseC/MucC n=1 Tax... 49 4e-05 UniRef50_A4A3V0 Positive regulator of sigma(E), RseC/MucC n=2 Ta... 49 4e-05 UniRef50_Q5R103 Positive regulator of sigma E activity n=2 Tax=I... 49 7e-05 UniRef50_Q47EG3 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 48 1e-04 UniRef50_A0Z443 Sigma factor algU negative regulatory protein Mu... 47 2e-04 UniRef50_Q1YS34 Positive regulator for alginate biosynthesis Muc... 47 2e-04 UniRef50_Q608M2 Sigma factor regulator MucC n=1 Tax=Methylococcu... 47 2e-04 UniRef50_C6WX93 Positive regulator of sigma E, RseC/MucC n=1 Tax... 46 3e-04 UniRef50_Q21IH1 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 46 4e-04 UniRef50_A6TQP8 Positive regulator of sigma E, RseC/MucC n=1 Tax... 46 5e-04 UniRef50_A3JFQ7 Sigma factor algU negative regulatory protein Mu... 45 5e-04 UniRef50_C5V4B5 Positive regulator of sigma E, RseC/MucC n=1 Tax... 45 0.001 UniRef50_B7RX57 Positive regulator of sigma(E), RseC/MucC superf... 44 0.001 UniRef50_C6P3S2 Positive regulator of sigma E, RseC/MucC n=1 Tax... 44 0.003 UniRef50_Q3SH44 Putative positive regulator of sigma E activity ... 43 0.003 UniRef50_UPI0000E87B72 hypothetical protein MB2181_02975 n=1 Tax... 43 0.004 UniRef50_A1S3X8 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 43 0.004 UniRef50_A1AWA8 Positive regulator of sigma E, RseC/MucC n=3 Tax... 42 0.007 UniRef50_B1KI54 Positive regulator of sigma E, RseC/MucC n=4 Tax... 42 0.008 UniRef50_C1D7K9 Positive regulator of sigma E, RseC/MucC n=1 Tax... 41 0.011 UniRef50_C5JB30 Positive regulator of sigma E activity n=1 Tax=u... 41 0.013 UniRef50_B8CXR4 Positive regulator of sigma E, RseC/MucC n=1 Tax... 41 0.016 UniRef50_C4ZKS2 Positive regulator of sigma E, RseC/MucC n=1 Tax... 40 0.027 UniRef50_A9BGN6 Positive regulator of sigma E, RseC/MucC n=1 Tax... 40 0.028 UniRef50_A1K5Z5 Putative sigma-E factor regulatory protein RseC ... 40 0.031 UniRef50_B0MTP2 Putative uncharacterized protein n=1 Tax=Alistip... 39 0.048 UniRef50_B0KB45 Positive regulator of sigma E, RseC/MucC n=10 Ta... 39 0.075 >UniRef50_P46187 Sigma-E factor regulatory protein rseC n=137 Tax=Enterobacteriaceae RepID=RSEC_ECOLI Length = 159 Score = 317 bits (813), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 159/159 (100%), Positives = 159/159 (100%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV Sbjct: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI Sbjct: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ 159 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ Sbjct: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ 159 >UniRef50_B4F050 Sigma-E factor regulatory protein n=12 Tax=Enterobacteriaceae RepID=B4F050_PROMH Length = 154 Score = 159 bits (401), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 72/151 (47%), Positives = 109/151 (72%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+KEWATVV WQ G+AL+ + C SC +RA CGS +LNK+GP+T H + +P ++PLV Sbjct: 1 MVKEWATVVHWQQGRALLRYGSSSGCGSCQARAACGSYLLNKIGPETVHQLELPVEQPLV 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 GQKVE+GI E SLL SA+LVY++PL+GLF++A + L +S++A C ++GG+ GFL+ Sbjct: 61 VGQKVEVGIPENSLLRSAMLVYLTPLLGLFIVAGIASLWLSSELAIFCSGLVGGVLGFLL 120 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFE 151 A+ +R ++ ++PIIL + LPP ++ + Sbjct: 121 AKNIARWWSKDEGFEPIILQIGLPPNELQVQ 151 >UniRef50_D0ZCZ8 SoxR reducing system protein n=2 Tax=Edwardsiella RepID=D0ZCZ8_EDWTE Length = 158 Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 104/156 (66%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++EWATV+SW+ G+AL+ C+ A CS C +R GCGS L +LGPQT H + + +PL Sbjct: 1 MMREWATVISWRQGEALLQCEAHAGCSGCRARQGCGSAALAELGPQTRHQLRLAVSQPLQ 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 PGQ+VE+G+ E S+L SALLVY++PLVGL QL SD A+ A+ GG+ GF + Sbjct: 61 PGQRVEIGLQEASVLRSALLVYITPLVGLLGGGGAGQLWLGSDGASALCALAGGVLGFTL 120 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSED 156 AR ++R+ A +QP++L VALP +R T+ + Sbjct: 121 ARRWARRMAQGEAYQPVLLQVALPSSQLRSITNPPN 156 >UniRef50_C6CNL7 Positive regulator of sigma E, RseC/MucC n=8 Tax=Enterobacteriaceae RepID=C6CNL7_DICZE Length = 156 Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/155 (47%), Positives = 103/155 (66%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MIKEWATVVSWQ G A++ C+ ++ C SC SR+ CG+ +LN++G TH + VP +PL+ Sbjct: 1 MIKEWATVVSWQAGIAVLHCEQRSGCQSCQSRSSCGTGLLNQIGGAATHQLTVPYAQPLL 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 PGQ+VE+G+AE SLL SA+LVY+ PL+GL L A+L Q S+ A + GA G F + Sbjct: 61 PGQRVEVGLAESSLLRSAMLVYLLPLLGLMLGAALMQYWLNSEPATVAGAFAGVALSFAV 120 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSE 155 + S K +QP+IL V+LP L+R + + E Sbjct: 121 VKRLSAKIGNNQRYQPVILQVSLPENLLRTDMTPE 155 >UniRef50_Q57126 Putative uncharacterized protein Y1293 n=4 Tax=Photobacterium RepID=Q57126_PHOPR Length = 165 Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 5/150 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++ ATV++ + G VSC + SC CASR CG+ ++ K P H + + D+PL Sbjct: 1 MMRTLATVIAVEQGSVTVSCQQQTSCGHCASRDNCGTGIVTKAIPGRAHQVTLATDKPLT 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF-----ASDVAALCGAILGGI 115 G+ VE+G++E S+LSSALLVY+ PL+ L L A + Q F S++ + +++ Sbjct: 61 IGEIVEIGLSEKSMLSSALLVYIVPLLFLVLGAVVGQWWFVDLAGTSELGVIITSMVSAA 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALPP 145 G L+AR Y+++ ++++P ++ V P Sbjct: 121 IGLLLARQYAKRLDGNSDYEPSLIRVLGQP 150 >UniRef50_P44060 Uncharacterized protein HI0850 n=21 Tax=Haemophilus influenzae RepID=Y850_HAEIN Length = 144 Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 53/144 (36%), Positives = 86/144 (59%), Gaps = 5/144 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKL-GPQTTHTIVVPCDEPL 59 M++E A V+S++NG A V C +++C CA++ CG+ L++L G + H V PL Sbjct: 1 MLRESAVVISYENGIAKVKCQSQSACGQCAAKNSCGTSSLSELNGKRGEHIFNVETLMPL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGG-- 117 GQ VE+G+ E S+L SALL+Y+ PL+ L ++ L + SD L ++ G+ Sbjct: 61 REGQIVEIGLEEKSMLLSALLMYVVPLLTLLIVTMLSD--YISDNEILRAILIFGLTALS 118 Query: 118 FLIARGYSRKFAARAEWQPIILSV 141 F++ + YSRK + E+QP++L V Sbjct: 119 FILVKSYSRKLGQQTEFQPVLLRV 142 >UniRef50_Q0I574 Possible positive sigma-E factor regulatory protein n=5 Tax=Pasteurellaceae RepID=Q0I574_HAES1 Length = 167 Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 85/147 (57%), Gaps = 11/147 (7%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKL-GPQTTHTIVVPCDEPL 59 M+ E A V+++ G+A V C K +CS C ++ CG+ L++L G H +V PL Sbjct: 24 MLTERAIVIAYHQGKATVKCQSKNACSQCTAKNTCGTSALSELTGKSPEHIFIVNSLIPL 83 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLF---LIAS-LF-QLLFASDVAALCGAILGG 114 GQ VELG+ E SL+S+ALL+Y+ PL+ L LIA+ +F Q L+ + C A+ Sbjct: 84 KIGQIVELGLQESSLISTALLLYIIPLMTLLSATLIANQIFSQELWGAIFILFCTAL--- 140 Query: 115 IGGFLIARGYSRKFAARAEWQPIILSV 141 F++ YS+K+ + +QPI+L + Sbjct: 141 --SFVLIHSYSKKWQHKKAFQPILLRI 165 >UniRef50_A6VKY4 Positive regulator of sigma E, RseC/MucC n=3 Tax=Pasteurellaceae RepID=A6VKY4_ACTSZ Length = 144 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 1/142 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKL-GPQTTHTIVVPCDEPL 59 M+ E A VV + +G+A V C K++C +C +R CG+ L L G Q H V P+ Sbjct: 1 MMTETAVVVYYDDGKATVKCQTKSACGNCTARNACGTAALAGLTGEQGEHLFAVETLTPV 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 GQ VE+G+ E SL++SA +Y PLV L + + + +++ F+ Sbjct: 61 KRGQLVEIGLPERSLMASAFWLYAVPLVTLLIATFVGEAWLPNELIRTIFIFFLTALSFI 120 Query: 120 IARGYSRKFAARAEWQPIILSV 141 I + ++RK A ++ +QP++L + Sbjct: 121 IVKIFTRKAARKSAFQPVLLRI 142 >UniRef50_D0I4M3 Sigma factor RpoE regulatory protein RseC n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I4M3_VIBHO Length = 164 Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 4/145 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI A V +G V C K SC SCAS+ CG+ +++ P I VP ++ + Sbjct: 1 MITALAEVTGSGDGYLTVRCQQKTSCGSCASKNTCGTGIVSNALPGKVMDIRVPSEKAIA 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLV----GLFLIASLFQLLFASDVAALCGAILGGIG 116 G VE+G+ E ++L SA++VY+ PLV G FL L L+ A + + ++L G+ Sbjct: 61 AGTLVEIGLEEQTILKSAVVVYILPLVFAVSGAFLGQILADLMAAGEGVIILSSLLAGVL 120 Query: 117 GFLIARGYSRKFAARAEWQPIILSV 141 G ++AR +SRK P +L V Sbjct: 121 GVVVARCFSRKLEQEIGTTPKLLRV 145 >UniRef50_A6FDN4 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FDN4_9GAMM Length = 173 Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 5/146 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E A V S Q V C+ +++C+ C + CG+ ++ K P TH V +V Sbjct: 15 MIIETAIVKSVIGDQVSVQCESQSACNHCHASDNCGTGMVAKAFPHRTHRFTVTKTADVV 74 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-----FASDVAALCGAILGGI 115 G K+E+G+ E +L++SA+LVY+ PL + L L Q L F + + A +GG Sbjct: 75 AGDKIEIGLREKNLVTSAMLVYLLPLATILLSLGLGQYLSQVFQFEGEGLVILAAFVGGY 134 Query: 116 GGFLIARGYSRKFAARAEWQPIILSV 141 GF R S F R +++P +L V Sbjct: 135 IGFSCTRKLSVIFDQRFDFKPKMLGV 160 >UniRef50_Q7VM35 Possible sigma-E factor regulatory protein n=1 Tax=Haemophilus ducreyi RepID=Q7VM35_HAEDU Length = 142 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 3/140 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+ E ATVV +QNG+ALV C VK +C +C ++A CG+++L+ L + + + PLV Sbjct: 1 MMVETATVVQYQNGKALVRCSVKTACGNCGAKADCGTQLLSSLVKERVPHFELSVNMPLV 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASD-VAALCGAILGGIGGFL 119 G V++G+ E +LL S +Y+ PL+ L A F LFA++ V I + F Sbjct: 61 AGDMVKIGLPEQTLLWSIFWIYVVPLMVLIGSAVGFTQLFANELVVVFMMFICTSMTFFS 120 Query: 120 IARGYSRKFAARAEWQPIIL 139 I + +K ++ PI L Sbjct: 121 IKKIIDKK--QLSQLNPIFL 138 >UniRef50_C4LBZ5 Positive regulator of sigma E, RseC/MucC n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBZ5_TOLAT Length = 153 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 4/147 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCG-SRVLNKLGPQTTHTIVVPCDEPL 59 MI+ ATVV+ + G V ++C C ++ C S ++ H I + C PL Sbjct: 1 MIEAIATVVATRAGYVSVEYQRASACGHCHHQSSCAISSGMDDGQGHGDHIIDIACILPL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQL--LFASDVAALCGAILGGIGG 117 GQ+V +GI E LL ALLVY+ PL + L A + Q + + A+ GA+LGG G Sbjct: 61 EIGQQVRVGIPENGLLKGALLVYILPLFFIMLGAGIGQAFSVAGEEWPAIAGAVLGGYVG 120 Query: 118 FLIARGYSRKFAARAEWQPIILSVALP 144 F++ R S + AE++P+IL V +P Sbjct: 121 FMLMRLRSARL-TNAEYKPVILGVTIP 146 >UniRef50_Q07YZ3 Positive regulator of sigma(E), RseC/MucC n=3 Tax=Shewanella RepID=Q07YZ3_SHEFN Length = 168 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 79/145 (54%), Gaps = 7/145 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++E A VV +Q G V ++K++C+ CAS CG+ + K T +P ++P Sbjct: 13 MMEEIARVVDYQQGWVTVEVELKSACNHCASSENCGTSTIAKAFSVHTQRFSLPSEKPCH 72 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-----SDVAALCGAILGGI 115 G +++G+ E ++ +A LVY+ PL+GLFL A + +L A ++ A+ LG + Sbjct: 73 SGDLLKIGLPESVIIKAAALVYLLPLIGLFLSAMIGHMLAAGIGLSTNGFAMAFGALGAL 132 Query: 116 GGFLIARGYSRKFAARAEWQPIILS 140 + I + ++ + A A P+I++ Sbjct: 133 VAWFIGKHFATELEAHA--TPVIIA 155 >UniRef50_Q15R30 Positive regulator of sigma E, RseC/MucC n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15R30_PSEA6 Length = 167 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 86/160 (53%), Gaps = 11/160 (6%) Query: 1 MIKEWATVVSWQNGQAL----VSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD 56 MI+E TV+ Q ++ VK++C SC ++ CG+ V+ + + +PC+ Sbjct: 1 MIEEVGTVIDVQMRHEHQFIKIATQVKSTCGSCHAKDNCGTGVIARALANKRDALWLPCE 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS-----DVAALCGAI 111 E + GQ V+LGI E LLS++LLVYM PL+ + ++A+ LL +S + + ++ Sbjct: 61 ESVAVGQDVKLGIPESMLLSASLLVYMLPLLTMIVVATTSTLLLSSYSIEGEGWVILSSM 120 Query: 112 LGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFE 151 + + FL + Y + + +++P +L+V LP R + Sbjct: 121 VAAVVSFLGVKRYISG-STKTQFEPHLLAV-LPSLKTRVD 158 >UniRef50_Q2SL37 Sigma factor algU negative regulatory protein MucC n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SL37_HAHCH Length = 144 Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 1/140 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E VV+ + + V ++ C SC++R GCGSR+LN++ + I V + Sbjct: 1 MILETGKVVAVGDHEVWVRTIRESVCQSCSARKGCGSRLLNQMSNGASTQIKVAKTFDVE 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQ-LLFASDVAALCGAILGGIGGFL 119 G +VE+G+AE +LL+++LLVY++PLV + ++A + + LL D+ + G GF+ Sbjct: 61 VGDEVEIGVAEQALLNASLLVYLTPLVAMMILAGVSRSLLHWPDLGVALAGLSGLGLGFV 120 Query: 120 IARGYSRKFAARAEWQPIIL 139 + S + + + P +L Sbjct: 121 FVKILSSRLSCNPTYHPQLL 140 >UniRef50_A4BBJ3 Positive regulator for alginate biosynthesis MucC n=1 Tax=Reinekea blandensis MED297 RepID=A4BBJ3_9GAMM Length = 162 Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 5/135 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLG----PQTTHTIVVPCD 56 +I+E VV + +V+ ++C SC +R GCG VL + G Q+ + +P D Sbjct: 5 LIQETGQVVRVDGDEVIVAVVRTSACQSCKARQGCGQAVLAEWGSAEHQQSKNHFRIPLD 64 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILG-GI 115 L PG VELG+ E ++ A+LVY+ PLV F++ + + S++ L G +LG G+ Sbjct: 65 RSLKPGDLVELGMPEDTVSRVAMLVYLLPLVVAFVVLLISSAMGLSELWQLVGLVLGFGV 124 Query: 116 GGFLIARGYSRKFAA 130 G + R +K +A Sbjct: 125 GVAIARRASQQKVSA 139 >UniRef50_Q47WP1 Sigma-E factor regulatory protein RseC n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47WP1_COLP3 Length = 159 Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 10/159 (6%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD---- 56 MIKE A VV+ + GQ V+ +K++CS CA CGS + K PQ T+ +P D Sbjct: 1 MIKELANVVAIEAGQVTVTSQIKSTCSGCAQVDTCGSGQIAKALPQAKLTLTLPYDISVT 60 Query: 57 -EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDV-----AALCGA 110 PL G V L + E +LSSA VY+ PL+GL ++L Q L + AL Sbjct: 61 GVPLKEGDCVVLALPEKHILSSAGQVYLLPLLGLITFSALGQWLLKQQILPHELFALGLG 120 Query: 111 ILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVR 149 ++GG G+ A+ ++ QP I+ V P +V+ Sbjct: 121 LIGGYLGYRFAKFQQKQGKQSENLQPKIIEVLPSPNIVK 159 >UniRef50_B8F3K6 Sigma-E factor regulatory protein n=7 Tax=Pasteurellaceae RepID=B8F3K6_HAEPS Length = 142 Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 12/145 (8%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLN-----KLGPQTTHTIVVPC 55 M+ E ATV+ +QNG A V C K+SC SC +++ CGS+ L+ K PQ + + Sbjct: 1 MMIEQATVIQYQNGIARVQCQAKSSCGSCVAQSHCGSKALSALAGEKFAPQFDLVVAM-- 58 Query: 56 DEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAI-LGG 114 PL G KV++G+AE SLL +Y PL + L + ++ G + Sbjct: 59 --PLQVGDKVKIGLAERSLLEGVFWLYAVPLFVIVLSTLVLSQWLNHELWVAAGVLCTTA 116 Query: 115 IGGFLIARGYSRKFAARAEWQPIIL 139 + F+I R ++K ++A++ P+ L Sbjct: 117 VTFFMIKRAVAQK--SQAQFIPVFL 139 >UniRef50_Q5E311 Sigma-E factor regulatory protein RseC n=38 Tax=Vibrionaceae RepID=Q5E311_VIBF1 Length = 161 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 5/150 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+ ATV+ Q +V C K SC+ C+S+ CG+ +++K P H ++ L Sbjct: 1 MMTALATVLEVQEDIVVVGCQQKTSCNHCSSKDSCGTGIVSKALPGKVHHWAFHTEKKLS 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-----SDVAALCGAILGGI 115 GQ VE+G+ E +LL SA +VY++PL+ L A L + + ++ + ++L + Sbjct: 61 VGQLVEIGLPEKNLLQSAAIVYLTPLLFLLFGALLSEWFLSPMIGLGELTTIVVSVLFAL 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALPP 145 GG+ +A+ S + E Q +L V P Sbjct: 121 GGYQLAKRLSHHIEQKTEQQVSLLRVLGEP 150 >UniRef50_Q2BJ04 Positive regulator for alginate biosynthesis MucC n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ04_9GAMM Length = 144 Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 2/143 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVV--PCDEP 58 MI+E VV V +++C+SCA+R GCG ++L G V P D Sbjct: 1 MIEEQGKVVEIDATGVWVETVRQSACASCAARNGCGQKLLASAGQGKRFIFRVNNPDDII 60 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF 118 + V LGI EG+ L + L +Y+ PL+ LF+ A + LF +++A + + L F Sbjct: 61 VHENDDVLLGIEEGAFLRATLFMYLIPLLALFVGAVIGNYLFVNEIATIVFSFLALTLSF 120 Query: 119 LIARGYSRKFAARAEWQPIILSV 141 + R S+ +QP+++ V Sbjct: 121 VFVRYGSQPLFRSYRYQPVLMKV 143 >UniRef50_C5S2D5 Sigma-E factor regulatory protein n=2 Tax=Actinobacillus minor RepID=C5S2D5_9PAST Length = 149 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 1/123 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKL-GPQTTHTIVVPCDEPL 59 MI E A V+S+Q+G A V C K +C CA++ CGS+ L+ L G + + + +E L Sbjct: 1 MIIENAMVLSYQDGIAQVQCYAKQACGGCAAQKNCGSKALSGLAGEKLAQVLEIKVNEDL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G+ ++LGI E +LL S VY PL+ L L A + +++ G I FL Sbjct: 61 SAGEMIQLGIPEMTLLKSVFWVYCIPLMILILSAVVLSQFIINELWLAFGMIFFTACSFL 120 Query: 120 IAR 122 + + Sbjct: 121 MVK 123 >UniRef50_A6VUA3 Positive regulator of sigma E, RseC/MucC n=2 Tax=Marinomonas RepID=A6VUA3_MARMS Length = 155 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 80/143 (55%), Gaps = 4/143 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E V+S ++G A V +SC+SC +R GCG + ++ +++ + + +PL Sbjct: 1 MIEETGRVLSIEDGFANVETIRTSSCTSCRARHGCGHHAIAQV--SSSNRMRMRAIDPLS 58 Query: 61 P--GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF 118 GQ V +GI E +LL +++ +Y+ PL+GL A + L A+ +I+G +GG Sbjct: 59 VEVGQSVVVGIPEDTLLQASVWMYLIPLLGLVGGAVIPSLWGGESGIAVIFSIIGFVGGL 118 Query: 119 LIARGYSRKFAARAEWQPIILSV 141 L+AR S++ ++ P IL + Sbjct: 119 LLARNKSKQEMNNLDYYPKILRI 141 >UniRef50_A0KGE9 Sigma-E factor regulatory protein RseC n=2 Tax=Aeromonas RepID=A0KGE9_AERHH Length = 153 Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 6/149 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M +E ATVV+ A V C+ +++CS C ++ CG+ + K P + V + Sbjct: 1 MSEELATVVAIDGQHAWVECERRSACSGCHQQSNCGTGTVAKAFPLQAQRLRVALTIEVS 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIAS-----LFQLLFASDVAALCGAILGGI 115 GQ+V LGI + S+L A LVY+ PL L A L LL A + + +LGG+ Sbjct: 61 VGQQVRLGIPQASILQGAALVYVLPLFCLLAGALLGQLWLAPLLSAGEGVTILSCLLGGL 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALP 144 GF + R +S + A + P +L V LP Sbjct: 121 IGFSLVRYFSNRLDQGA-YGPRMLGVVLP 148 >UniRef50_C5SBU1 Positive regulator of sigma E, RseC/MucC n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBU1_CHRVI Length = 166 Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 6/143 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E +++ QA V+ + +++C C+ CG+ +L ++ + H + + P+ Sbjct: 1 MIEERGRIIALVGDQARVTAERRSACGQCSVNNACGTSLLERVFGR--HPVELLARNPIG 58 Query: 61 P--GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS--DVAALCGAILGGIG 116 G +V +G++E LL +A Y+ P++ L L A+L + + DVA++ GA++G Sbjct: 59 AQVGDEVVVGLSEQGLLRTAAAAYLVPILALILGATLGERFGGAYPDVASVLGALIGLAL 118 Query: 117 GFLIARGYSRKFAARAEWQPIIL 139 F RGYS R E QP+IL Sbjct: 119 AFWWLRGYSVTLTRRPERQPVIL 141 >UniRef50_Q0A8Z6 Positive regulator of sigma E, RseC/MucC n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8Z6_ALHEH Length = 147 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 5/144 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI++ ATV++ V +++CS CA+++GCG+ L + P + V + Sbjct: 1 MIEQQATVMARDGDHVWVEAHRQSTCSGCAAQSGCGTGALGRWLPGAVTRLRVADPLGVR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-----SDVAALCGAILGGI 115 PG++V + +AEG++L +++VY+ PL+GL A + L A DV AL G + G + Sbjct: 61 PGEQVVIAVAEGAVLRGSVMVYLVPLLGLLGGALAGEQLSAWLSHTGDVLALMGGVSGLL 120 Query: 116 GGFLIARGYSRKFAARAEWQPIIL 139 GF +AR R QP+++ Sbjct: 121 LGFALARRVGADRGHRHRMQPVLV 144 >UniRef50_B5JX05 Positive regulator of sigma E, RseC/MucC n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JX05_9GAMM Length = 156 Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 7/145 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNK-LGPQTTHTIVVPCDEPL 59 MI+E ATV + ++ A V +C SC+++ GCG+ L K +G Q T + Sbjct: 1 MIEEQATVTAVEDDYAWVQTQRSTACDSCSAQKGCGTSTLGKVIGRQYTQVRALNSSGAQ 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIG--- 116 V G +V +G+AE LL S+L VY+ P+ + + L A + +L A+ G+G Sbjct: 61 V-GDEVMVGLAEDMLLKSSLAVYLVPIALMLMGGVLGDYWSAGN--SLYAALASGLGLAF 117 Query: 117 GFLIARGYSRKFAARAEWQPIILSV 141 GF+ + +S K + +QP++L V Sbjct: 118 GFVWIQWFSHKISHNERFQPVVLRV 142 >UniRef50_C7RA51 Positive regulator of sigma E, RseC/MucC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA51_KANKD Length = 163 Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 16/158 (10%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNK-------LGPQTTHTIVV 53 M+ E VV+ + V + CSSC + CGS +++K + P H Sbjct: 6 MLTELGHVVAKEKDTVWVQTQSRTGCSSCQVNSVCGSGIVSKAFSHKVFITPLKNHINAN 65 Query: 54 PCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA--SDVAALCGAI 111 DE VE+GI E ++ ++ +VY+ PL+ + + ++Q L S+++++ A+ Sbjct: 66 IDDE-------VEVGIPEDLVVRASFMVYLVPLISMIIALLVWQFLLTNPSELSSILAAV 118 Query: 112 LGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVR 149 G GF+I YSR A + + +P++L + P V+ Sbjct: 119 AGLAIGFVITHFYSRSAAEKGQTEPVLLRIVKRPIAVK 156 >UniRef50_A1U2W9 Positive regulator of sigma E, RseC/MucC n=2 Tax=Marinobacter RepID=A1U2W9_MARAV Length = 149 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 7/148 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E VV+ Q V ++C SC++R+GCG R L + + ++V Sbjct: 1 MITETGKVVALVGDQVWVQTIRTSACQSCSARSGCGQRALAAVSGGRANQVLVDNSVGAR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA--SDVAALCGAILG-GIGG 117 G +V +G+ E SLL+++L++Y PLV L ++AS+ +A SD+ A+ GA+ G G+G Sbjct: 61 VGDEVVIGLDEQSLLNASLIIYGLPLV-LMVLASVMAHNWAAGSDLGAIAGAVAGLGVGF 119 Query: 118 FLIARGYSRKFAARAEWQPIILSVALPP 145 +L+ R + A +QP +L + P Sbjct: 120 WLVQR---WQAGAGDRYQPRLLRIKTIP 144 >UniRef50_Q1N1C0 Sigma factor algU negative regulatory protein MucC n=1 Tax=Bermanella marisrubri RepID=Q1N1C0_9GAMM Length = 155 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 1/143 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V+ + V +++C SC ++ GCG +L K+G + + D L Sbjct: 1 MIEETAKVIRVDDNWVWVRAIAQSACGSCQAQKGCGHSLLAKVGQRQIDIQLPRQDYELS 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 V +G+ E ++L S+LL+Y PL+ + ++A L ++ ++ A + A L I GF Sbjct: 61 VNDDVIIGVPEQAVLRSSLLMYGVPLLLMLVVAGLASVMSLAEGAVILLAFLALISGFFY 120 Query: 121 ARGYSRKFAARAEWQPIILSVAL 143 +S A EW P I+ AL Sbjct: 121 VSRWSNT-ARIEEWHPRIIRKAL 142 >UniRef50_Q3IDL5 Putative regulator of sigma E (Sigma 24) factor n=2 Tax=Pseudoalteromonas RepID=Q3IDL5_PSEHT Length = 149 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 10/148 (6%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI++ VV+ A + K +C C R CGS+V +KL T D P+V Sbjct: 1 MIEQTLKVVALSGHIAHLEAQQKQACEGCNGR--CGSQVFSKLFGSAKKTFPYKFDTPVV 58 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPL---VGLFLIASLFQLLFASDVAALCGAILGGIGG 117 GQK+ L + + ++ A VYM PL +G L+A+ +LL ++ + A LGG G Sbjct: 59 VGQKITLSLDDSHVVKHAFTVYMLPLFLSLGFALVAA--ELLLVTEGWQILAAALGGGIG 116 Query: 118 FLIARGYSRKFAARAEWQPI-ILSVALP 144 FL+A+ + + F R + + I I ++LP Sbjct: 117 FLMAKMWVKSF--RHDIKVIKIHPISLP 142 >UniRef50_Q12KH8 Positive regulator of sigma(E), RseC/MucC n=15 Tax=Shewanella RepID=Q12KH8_SHEDO Length = 177 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 9/147 (6%) Query: 1 MIKEWATVVSWQ-NGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 +++E +V++ G V ++K++C+ C++ CG+ + K T +PC+ Sbjct: 16 LLEEVGRIVAYDAKGWVRVEVELKSACNHCSNSDNCGTSAVAKAFSVKTQQFSLPCETQY 75 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL------FASDVAALCGAILG 113 G V+LG+ LL +A LVY+ PL+GLF+ A + Q+L SD+ A+ + G Sbjct: 76 PIGDLVKLGLPASVLLKAAALVYLLPLIGLFVGALIGQVLGQNLLSVDSDLPAITLGVAG 135 Query: 114 GIGGFLIARGYSRKFAARAEWQPIILS 140 +L+ + ++ + A QP+I++ Sbjct: 136 AFSAWLLGKRFAHQLEQGA--QPVIMA 160 >UniRef50_B4RVA9 Sigma-E factor regulatory protein RseC n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RVA9_ALTMD Length = 148 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E ATVV+ V +K++C++C +++ CG+ V+++ T + + P+ Sbjct: 1 MIRETATVVAIDGDSVTVEAAIKSTCNACEAQSDCGTGVISRAIAPKTQQLTLRTPMPVR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASD--VAALCGAILGGIGGF 118 GQKV +GI E +LS++ +Y+ PLV + + L + V L + + + Sbjct: 61 IGQKVTVGIPEAGILSASAWLYLLPLVAFIAAYAGAETLLSQSGVVHELWAMVPSAVITY 120 Query: 119 LIAR--GYSRKFAARAEWQPIILSVA 142 + R Y + A++QP++LS A Sbjct: 121 AVYRLIAYKLRRIEGAKYQPVLLSTA 146 >UniRef50_B8GPK5 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPK5_THISH Length = 157 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 10/145 (6%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKL-GPQTTHTIVV-PCDEP 58 MI+E A V+S + G A V +++C SCA+ GCG+ V+ K+ G + + + P Sbjct: 1 MIEEQARVISVEQGHAWVETQRRSTCGSCAANKGCGTSVIAKMVGNRRSRVRAIDPVGVR 60 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF 118 L G +V +GI E +L+ +L VY PL+ L + A L + L+ + A +L G+ G Sbjct: 61 L--GDEVVVGIEEAALVRGSLAVYTVPLITLLVGALLARWLWPA--AGEPVVVLSGLAGL 116 Query: 119 LIARGYSRKFAARA----EWQPIIL 139 + R FA R +QP+IL Sbjct: 117 AAGLVWLRLFAGRVSSDPRYQPVIL 141 >UniRef50_Q31HP7 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HP7_THICR Length = 167 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 4/121 (3%) Query: 12 QNGQALVSCDVKASCSSCASRAGCGSRVLNKL-GPQTTHTIVVPCDEPLVPGQKVELGIA 70 ++G A VS + CS C ++ CG+ VL +L P++T I V G +V L + Sbjct: 32 EDGMAYVSTQRETGCSGCQTQKSCGTSVLAQLFSPKSTAPIQVINTLEAKEGDEVILSMD 91 Query: 71 EGSLLSSALLVYMSPLVGLFLIASLFQLLFAS--DVAALCG-AILGGIGGFLIARGYSRK 127 E L+ +L+ Y PL+GLF+ A LF++ AS V + G AI+GG+ G L+ G ++K Sbjct: 92 ESQLIKHSLMGYGLPLLGLFIGAILFKIAIASFFQVPSQDGVAIVGGVIGLLLGWGITKK 151 Query: 128 F 128 + Sbjct: 152 Y 152 >UniRef50_Q0VP14 AlgM protein n=2 Tax=Alcanivorax RepID=Q0VP14_ALCBS Length = 156 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 9/147 (6%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++E VV+ + G V ++C +C ++AGCG ++N+ + VP + Sbjct: 1 MLEEQGIVVAVEPGAIWVETVRASTCGACKAKAGCGHHLINEQQSGQRARLRVPSQDSHQ 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASL-----FQLLFASDVAALCGAILGGI 115 G V + + EG+L+ AL VY PLV LF A L +++ AS V + G L Sbjct: 61 VGDTVNVALPEGALMRGALWVYGLPLVLLFAGALLGSALPIEMVDASAVLGMAGLFL--- 117 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVA 142 GF I R SR+ +QP ++ A Sbjct: 118 -GFAINRVMSRRAGHTQAYQPRVVPAA 143 >UniRef50_UPI0001AEB8D2 sigma-E factor regulatory protein RseC n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEB8D2 Length = 153 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 78/145 (53%), Gaps = 8/145 (5%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNK-LGPQTTH-TIVVPCDEP 58 MI+E ATVV+ V +K++C++C +++ CG+ V+++ L P+T T+ P P Sbjct: 1 MIRETATVVAVNGDTVTVEAAIKSTCNACQAQSDCGTGVISRALAPKTQQLTLRTPM--P 58 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASD--VAALCGAILGGIG 116 + GQ+V +GI E +LS++ +Y+ PL+ S+ L +S+ L + G+ Sbjct: 59 VRVGQEVTVGIPEAGVLSASAWLYLLPLIAFIGAYSVSISLLSSNGFTHELWAMLPSGLV 118 Query: 117 GFLIAR--GYSRKFAARAEWQPIIL 139 F + Y + R ++QP++L Sbjct: 119 TFFAYKLIAYKLRRVERTKYQPVLL 143 >UniRef50_A0Y589 Putative regulator of sigma E (Sigma 24) factor n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y589_9GAMM Length = 149 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI++ TVV+ A + + K +C+ C R CGS+V +KL T+ + P+ Sbjct: 1 MIEQTLTVVALSGHTAHLEAEQKQACAGCNGR--CGSQVFSKLFGTAKKTLPYKFESPVE 58 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPL-VGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 GQK+ L + + ++ A VYM PL + L + +LL + + A +GG+ GF Sbjct: 59 IGQKITLSLDDSHMVKHAFAVYMLPLFLSLVFALATSELLLMGEGWQIFAAAVGGVLGFY 118 Query: 120 IAR 122 IA+ Sbjct: 119 IAK 121 >UniRef50_B7UYX7 Positive regulator for alginate biosynthesis MucC n=8 Tax=Pseudomonas RepID=B7UYX7_PSEA8 Length = 151 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 1/140 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVP-CDEPL 59 MI+E VV+ + G V +++CSSC++ AGCG ++ +LG V D L Sbjct: 1 MIEEQGRVVATEPGAVWVETVRRSTCSSCSANAGCGQGLMQRLGVGAGRARVRALSDLSL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G V LGI E LL +++L Y+ PL+G F+ A L + + + G + +L Sbjct: 61 RVGDAVVLGIHEDLLLRASVLFYLFPLLGFFVAALLATRAGLVEPLIIVSGLAGLLAAWL 120 Query: 120 IARGYSRKFAARAEWQPIIL 139 + R ++R+ A QP++L Sbjct: 121 LVRRHARRHADDPASQPVVL 140 >UniRef50_C0N4S0 Positive regulator of sigma(E), RseC/MucC superfamily n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N4S0_9GAMM Length = 141 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 69/122 (56%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI++ ATV+S Q V + +++C C +R GCG+ +L K Q I V + L Sbjct: 1 MIEQKATVISRDIHQVWVEAERQSTCGQCQARKGCGTGLLAKHVGQRFSRIAVKTSQDLR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 GQ+V + I E +LLS A+++Y+ PL+ +F+ A+L ++ + ++ + + G + GF Sbjct: 61 VGQQVMVTIPEQALLSGAVMMYLLPLLLMFVTAALARIANSGELVEIIAGLSGLVAGFYF 120 Query: 121 AR 122 + Sbjct: 121 VK 122 >UniRef50_UPI0000E11529 positive regulator of sigma E, RseC/MucC n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E11529 Length = 167 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 5/111 (4%) Query: 18 VSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSS 77 VS +K +C SC + + C + V+ K DE + GQ+VELGI E L+ Sbjct: 23 VSTAIKTTCGSCQAESNCSTSVVAKFFTPKAEAFKFTVDETVSVGQQVELGITENRLVQV 82 Query: 78 ALLVYMSPLVGLFLIASL-FQLL----FASDVAALCGAILGGIGGFLIARG 123 + +Y+ P++ + +L +LL F ++ AL ++ IG F I G Sbjct: 83 SFYLYLLPIMVFVITTALSIELLADTAFGHELVALLVGLMSTIGTFFIISG 133 >UniRef50_C5BRN1 Positive regulator for alginate biosynthesis MucC n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BRN1_TERTT Length = 155 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 1/123 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDE-PL 59 MI E V++ ++ V ++C +C +R GCG R+L T + +P + L Sbjct: 1 MITENGKVLAVEDHNVWVETLKTSTCGACRARHGCGQRMLAASDDYTRVRVALPAEYGNL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 PG +V LGI E S L L Y PLV + + + F + + AI G I G Sbjct: 61 QPGDEVTLGIDESSFLKGVFLAYGLPLVAMLVAVASAAQFFTEEWVLMLAAITGLITGGA 120 Query: 120 IAR 122 + R Sbjct: 121 VVR 123 >UniRef50_C6P606 Positive regulator of sigma E, RseC/MucC n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P606_9PROT Length = 145 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 45/87 (51%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI A VV+ NG+ +V ++ C C SR+ CG L K I V CD + Sbjct: 1 MIVTTARVVAADNGRTMVEPSNESGCGGCKSRSVCGVSGLGKYFSGNRKAIEVQCDASVT 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLV 87 G +++L ++EG +L + LL Y+ P V Sbjct: 61 AGDELQLSMSEGDMLKAGLLAYLLPSV 87 >UniRef50_B6BUJ9 Positive regulator of sigma(E), RseC/MucC superfamily n=1 Tax=beta proteobacterium KB13 RepID=B6BUJ9_9PROT Length = 139 Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 1/109 (0%) Query: 26 CSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSP 85 C C GCG+ + KL + I + +E G VE+ E LL +L++Y P Sbjct: 25 CGLCGQTQGCGNSLWGKLLNHKKNKIQINTEEKFTKGDIVEMHYDEKKLLRISLIIYFIP 84 Query: 86 LVGLFLIASLFQLLFASDV-AALCGAILGGIGGFLIARGYSRKFAARAE 133 L+ + + +L Q +F +++ ++ ILG G L++R + + A + Sbjct: 85 LLSVLIFLALAQYIFGNNIPISIFSLILGFFVGLLLSRYFVQSMNAELD 133 >UniRef50_A0YCK5 Positive regulator for alginate biosynthesis MucC n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCK5_9GAMM Length = 160 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 4/143 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVV----PCD 56 M+KE + + + V + +C+SC+++ GCG +L K+G +H + V Sbjct: 1 MMKETGRIAAIEPDCLWVETIRQTTCNSCSAQKGCGHGILGKIGSGKSHYVRVLLGGSSP 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIG 116 E V +++ I E SL++ A++VY+ P++ + A + D G+++G I Sbjct: 61 EQFVVDDDIDIVIPESSLVAGAMVVYLVPIITMLTAAITVSQWQSGDFWVFSGSVVGFIA 120 Query: 117 GFLIARGYSRKFAARAEWQPIIL 139 G + R ++ +QP++L Sbjct: 121 GLGLVRWHALNNRNNQNYQPVVL 143 >UniRef50_B9ZJG2 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJG2_9GAMM Length = 151 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 8 VVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVEL 67 ++S + A V + +++C SC++R GCGS VL+++ + + + L G +V + Sbjct: 1 MLSAEAHSARVRIERQSTCGSCSARTGCGSGVLSEVLGRKAVEVTIGHPGQLRAGDRVVI 60 Query: 68 GIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRK 127 GI + +L+S AL +Y+ PL+GL + L L+ A + +L G GF++ G R Sbjct: 61 GIRDQALVSGALAMYLLPLLGLVAVPGL--LMLAWPLLGEGWLMLAGAAGFVLGLGGVRY 118 Query: 128 FAAR--AEWQPIILSVALPPGLVRFE 151 + + P+ L G+VR + Sbjct: 119 WMRHRAPDLAPVFLRREPDAGVVRAQ 144 >UniRef50_C1DQR8 Positive regulator for alginate biosynthesis MucC n=2 Tax=Azotobacter vinelandii RepID=C1DQR8_AZOVD Length = 156 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 2/145 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKL-GPQTTHTIVVPCDEPL 59 MI+E VV+ + + +A+C C + GCG + L P+ I PL Sbjct: 1 MIEEPGRVVAIEREAVWIEALDEAACPGCTASVGCGRWSFDWLETPRRRRRIRALSVMPL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G V +GI E LL S L +Y+ PL+GLF+ Q L + + LG + + Sbjct: 61 RVGDAVVVGIREDFLLRSTLAIYLLPLLGLFVCTIAIQQLGFGESLMIPAGFLGFVSVWA 120 Query: 120 IARGYSRKFAARAEWQPIILSVALP 144 + R SR+ QP++L ALP Sbjct: 121 MVRRISRRQMNDPTLQPVVLR-ALP 144 >UniRef50_Q1ZCS1 RNA polymerase sigma-70 factor n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZCS1_9GAMM Length = 149 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 9/145 (6%) Query: 1 MIKEWATVVSWQNGQ----ALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD 56 MI+E ++ + A+V C +++C +C CG V+ K + T+ V Sbjct: 1 MIQESGKIIEIKEVDHKKVAIVECISRSACGTCHQSNVCGVGVVAKTFSEKTNHFSVTYK 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIAS--LFQLLFASDVAALCGAILGG 114 E + V+L I+ L +A VY+ PL LF I S + Q LF D +A+ + Sbjct: 61 EGMQIDTMVDLQISNADLFKTASFVYLLPL--LFFIGSALIAQYLFLLDESAIILISVTF 118 Query: 115 IG-GFLIARGYSRKFAARAEWQPII 138 +G GF+ R SR+ ++ ++ +I Sbjct: 119 MGLGFVFMRFISRRLFSKKQYIEVI 143 >UniRef50_A1SR27 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SR27_PSYIN Length = 149 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 5/121 (4%) Query: 23 KASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVY 82 K++CSSC + CG V++K +P + + + VEL I+ L+ SA+LVY Sbjct: 27 KSACSSCQNNDTCGVGVVSKTFSDKALQFTIPYAKEMEVDKFVELNISNNDLIKSAMLVY 86 Query: 83 MSPLVGLFLIASLF---QLLFASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPIIL 139 + PL LF I S Q ++ + AI GF+I ++K + +I Sbjct: 87 LVPL--LFFITSALIAKQFNITNEAIIILIAISWAAAGFVITHFVTKKLYPQKSINQLIS 144 Query: 140 S 140 S Sbjct: 145 S 145 >UniRef50_C7RTN3 Positive regulator of sigma E, RseC/MucC n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RTN3_9PROT Length = 138 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/111 (40%), Positives = 55/111 (49%), Gaps = 6/111 (5%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M W TV + +GQA + D C C GCG L L T T+ V E V Sbjct: 1 MNDAWGTVTAVDDGQATIRMD-DGGCGRCRESGGCGGNNLGHLLCATPRTLRVANPERCV 59 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAI 111 GQ+V +G+ +GSL SSAL Y PL+GLF+ A L S VA GAI Sbjct: 60 VGQRVRVGVVDGSLGSSALHAYAVPLLGLFVGA-----LGGSAVAGEIGAI 105 >UniRef50_Q2W409 Positive regulator of sigma E activity n=2 Tax=Magnetospirillum RepID=Q2W409_MAGSA Length = 180 Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 66/145 (45%), Gaps = 2/145 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGC--GSRVLNKLGPQTTHTIVVPCDEP 58 M++ +A VV+ G+A + SC C S C G ++ + Q +P D Sbjct: 23 MVEGFARVVAISGGKAWAEPEQAPSCGGCHSAGLCSIGKQIGDPSARQMAKRFALPGDLG 82 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF 118 L G+KV +GI E +L AL Y PL+ L + L Q L SD A GA+ G + G Sbjct: 83 LTVGEKVVVGIREDTLTKGALTAYGLPLLTLLIGGILGQELGHSDGMAALGAVGGMVIGL 142 Query: 119 LIARGYSRKFAARAEWQPIILSVAL 143 L AR + +AR P L A Sbjct: 143 LGARFIAGILSARGVLTPRYLRRAF 167 >UniRef50_Q47FZ1 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Dechloromonas aromatica RCB RepID=Q47FZ1_DECAR Length = 180 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 46/83 (55%) Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G++V +G++E +LLS++L Y PL+ S+ Q ++ D+ + G G G L+A Sbjct: 91 GERVVVGVSERALLSASLTAYGVPLLFALTAGSVIQAVYGEDLTTMLGMAGGLFLGLLVA 150 Query: 122 RGYSRKFAARAEWQPIILSVALP 144 R +R+ AAR + P L A P Sbjct: 151 RLNARRLAARGDLAPRFLRRARP 173 >UniRef50_B3PJ98 Positive regulator for alginate biosynthesis MucC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJ98_CELJU Length = 158 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 7/149 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVV-----PC 55 MI E +VS + V ++ C +C + GCG ++ K G ++ V+ P Sbjct: 1 MILETGKIVSIEPEGVWVETIQRSVCGTCKAEKGCGQSLMAKWGANPSYLWVLLEGRDPA 60 Query: 56 DEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGI 115 + G +++GI E ++ ++LL Y+ PL+ + L A Q+LFASD+A+ GA+ G + Sbjct: 61 HYRI--GDDIQIGIPEDVVVKASLLAYVMPLLLIVLGAVGGQVLFASDLASGLGALGGLV 118 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALP 144 G L R ++ + + QP+++ P Sbjct: 119 LGGLFLRWHAVRSRYDSRLQPVLVDERKP 147 >UniRef50_D0KYN1 Positive regulator of sigma E, RseC/MucC n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYN1_HALNC Length = 183 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 6/122 (4%) Query: 18 VSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSS 77 + ++ C SC+SR GCG ++ K + H + V D P+ G V+L + +L+ + Sbjct: 55 IETQRQSGCQSCSSRGGCGVGIMQKALNRRQHRVRVHTDLPVKVGDHVQLLLPAAALVQA 114 Query: 78 ALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGG-FLIAR---GYSR--KFAAR 131 ++L+Y+ PL+GL + A + Q L A+D A+ GA++G LIAR G SR ++A R Sbjct: 115 SVLMYLLPLLGLIVGAMIGQSLLATDAGAIGGAVVGFAAVLLLIARQQNGLSRNGRYAPR 174 Query: 132 AE 133 E Sbjct: 175 IE 176 >UniRef50_A4A3V0 Positive regulator of sigma(E), RseC/MucC n=2 Tax=unclassified Gammaproteobacteria RepID=A4A3V0_9GAMM Length = 155 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 5/107 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIV---VPCDE 57 M+ E A VV+ + V ++SC SCA+RAGCG +LN + ++ +P D+ Sbjct: 1 MLTESARVVAVEETAVWVETLRQSSCGSCAARAGCGHGMLNSARAGVSKGLLKAALPADK 60 Query: 58 PLVPG--QKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS 102 L VE+ + E L +A L+Y PL+ + L A L +AS Sbjct: 61 TLEVSLHDTVEISVPEQGFLRAAWLLYAMPLLTMLLAAGLADHFWAS 107 >UniRef50_Q5R103 Positive regulator of sigma E activity n=2 Tax=Idiomarina RepID=Q5R103_IDILO Length = 147 Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 43/81 (53%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +KE A V + + V+ +K +CS CA + CG+ +L+K+ V ++ P Sbjct: 1 MKEVAEVTAVDGNRVTVTTQLKTACSGCAQVSNCGAGILSKVFADRNAQFTVVTEQTFSP 60 Query: 62 GQKVELGIAEGSLLSSALLVY 82 G +V+L + E ++ ALL+Y Sbjct: 61 GDQVQLEVPETAVTRFALLLY 81 >UniRef50_Q47EG3 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Dechloromonas aromatica RCB RepID=Q47EG3_DECAR Length = 147 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 12/140 (8%) Query: 6 ATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKL---GPQTTHTIVVPCDEPLVP- 61 A V + + ALV + + C C + GCG + L ++ GP+T D + Sbjct: 13 AVVRAREGASALVEVE-QGGCGRCHEKGGCGGQHLTQMFCAGPKTYQV-----DNAIGAD 66 Query: 62 -GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G V + +A GS+ +A L Y PL+G + ++ FA D A+ GA G I FL Sbjct: 67 IGDHVTIAVAAGSVRHTANLAYGVPLIGC-IGGAVIGASFAGDGGAVLGAASGLILSFLY 125 Query: 121 ARGYSRKFAARAEWQPIILS 140 R S+ A + +P I+S Sbjct: 126 IRFRSQANAGNSTERPHIIS 145 >UniRef50_A0Z443 Sigma factor algU negative regulatory protein MucC n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z443_9GAMM Length = 159 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 12/148 (8%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHT-IVVPCDEPL 59 M++E VV+ ++ V + C CA+RAGCG ++++ T H +V + Sbjct: 1 MLREIGRVVAVESASVWVETIPSSLCGKCAARAGCGQGIVSR---TTGHRGLVEALETST 57 Query: 60 VPGQ------KVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILG 113 V Q +VE+ + E ++L +LLVY++PL LF I ++ + A + +LG Sbjct: 58 VRAQDCRVDDEVEIELPESAVLKGSLLVYLAPL--LFGITAVLIAQPYGEFATVIAFLLG 115 Query: 114 GIGGFLIARGYSRKFAARAEWQPIILSV 141 GF+ R ++ R ++P + SV Sbjct: 116 LGAGFVAVRVATQWVLPRQSFEPRLSSV 143 >UniRef50_Q1YS34 Positive regulator for alginate biosynthesis MucC n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS34_9GAMM Length = 152 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E +V+ + V K++C C + GCG + L+KL +T V+ + Sbjct: 1 MILENGIIVAVEADGLWVETIQKSACEVCVAEKGCGQKFLSKLAGKTVSIRVLRNKKSSA 60 Query: 61 P---GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGG 117 GQ V +GI E ++ ++LLVY+ P+ A LF SD+ A+ GA+ G + G Sbjct: 61 EYSVGQSVTIGIPEDIIVMASLLVYLLPIFAAIGGAWLFS---GSDLQAVGGALGGLLLG 117 Query: 118 FLIARGYSRKFAARAEWQPIILSVALPPGLVRFE 151 L+ +S K + P+++ + P ++ F+ Sbjct: 118 GLMVNLHSVKQRDDMRFNPVLIEEPVQPSILNFQ 151 >UniRef50_Q608M2 Sigma factor regulator MucC n=1 Tax=Methylococcus capsulatus RepID=Q608M2_METCA Length = 146 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 2/106 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V + V K++C SCA GC + ++ +L + + + + Sbjct: 1 MIEEEAIVTQVEEHAIWVEKFRKSACGSCA--GGCSTSLVARLLGGKPLRLRIATEARVA 58 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAA 106 PG +V +G+ EG+LL+ + +Y+ PL L A L +LL A ++A Sbjct: 59 PGDRVIIGVEEGALLAGSFRMYLFPLFSLIGGALLGKLLAAQGLSA 104 >UniRef50_C6WX93 Positive regulator of sigma E, RseC/MucC n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WX93_METML Length = 156 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 9/148 (6%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V+ Q G + + + +CS C R GCG+ K+ + T + Sbjct: 1 MIEEHAVVIRCQQGAVELEIERRTACSICGQRRGCGNATWGKMLGHKSQTFLAENGINAQ 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF-- 118 G V +GI E L S L+Y+ PL+ L + L + LF + + + A+ G GF Sbjct: 61 VGDSVVVGIDERMALRSVFLLYVLPLLSLIFFSVLAEALFNNQLYVVLAAVFGLCIGFFW 120 Query: 119 ----LIARGYSRKFAARAEWQPIILSVA 142 L+ RG S A +Q ++L A Sbjct: 121 VKWYLMGRGRS---AGVNSYQAVVLRYA 145 >UniRef50_Q21IH1 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IH1_SACD2 Length = 156 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 16/127 (12%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+ E A VV+ ++ V +++C+ C ++ GCG ++L G + T+V Sbjct: 1 MLSETAKVVAVESDGLWVETHQQSACNQCRAKNGCGQKLL--AGGPSNATLVKAIFNAAS 58 Query: 61 P------GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA--SD----VAALC 108 P G V +GI E +L++ A + Y+ PL LF++A++ F SD + AL Sbjct: 59 PSEIWTVGDNVVIGIEERALINGAFMAYVLPL--LFMVAAVVAGSFVGLSDPVLALVALA 116 Query: 109 GAILGGI 115 G +LGG+ Sbjct: 117 GVLLGGL 123 >UniRef50_A6TQP8 Positive regulator of sigma E, RseC/MucC n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TQP8_ALKMQ Length = 141 Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 17/145 (11%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +K+ TVVS + A V +ASC C + C K+G + V + Sbjct: 1 MKQCGTVVSLEGKMAKVLMQRQASCGDCTA---C------KMGQEEMKLEVKALNNANAQ 51 Query: 62 -GQKVELGIAEGSLLSSALLVYMSPL----VGLFLIASLFQLLFASDVAALCGAILGGI- 115 GQ+VE+ + ++L++A +VYM PL +G+F ++ L + L A G I Sbjct: 52 VGQRVEIDMEHQNVLAAAFIVYMIPLFALMMGIFAGNAMLSALGVENYRDLLTAFAGFIF 111 Query: 116 --GGFLIARGYSRKFAARAEWQPII 138 F++ + KF ++ PII Sbjct: 112 MATSFMVIKIRENKFKTNKDFTPII 136 >UniRef50_A3JFQ7 Sigma factor algU negative regulatory protein MucC n=1 Tax=Marinobacter sp. ELB17 RepID=A3JFQ7_9ALTE Length = 149 Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 7/144 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E VV+ V +++C SC++R+GCG RVL + + V Sbjct: 1 MITESGRVVAVSGSTVWVQTIRQSACQSCSARSGCGQRVLAAASGGRANQVQVLNTLHAG 60 Query: 61 PGQKVELGIAEGSLLSSA---LLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGG 117 G V LGIAE +LL ++ + + +V + AS QL+ SD A+ A LG G Sbjct: 61 VGDDVTLGIAEQALLQASLLVYALPLLLMVAASMAAS--QLVPGSDGVAILAAGLGLGAG 118 Query: 118 FLIARGYSRKFAARAEWQPIILSV 141 F +AR + R+ ++QP ++ V Sbjct: 119 FFVARLWQRRMP--GDYQPHLMKV 140 >UniRef50_C5V4B5 Positive regulator of sigma E, RseC/MucC n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4B5_9PROT Length = 141 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 2/123 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++ A VV + G LV D + CS C + GCGS + +L V Sbjct: 1 MLETRAVVVRKEAGVTLVRADGASGCSVCEGK-GCGSSKVTQLFCNKPREFQVENRINAA 59 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF-ASDVAALCGAILGGIGGFL 119 G +V + +G++L LVY+ PL +F A+L + D GA+ G + GF Sbjct: 60 VGDEVIVATVDGTVLRGISLVYLLPLALMFAAATLASVWSGGQDGYVAAGALSGVVAGFA 119 Query: 120 IAR 122 IA+ Sbjct: 120 IAK 122 >UniRef50_B7RX57 Positive regulator of sigma(E), RseC/MucC superfamily n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX57_9GAMM Length = 158 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 10/149 (6%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTI------VVP 54 M+ E VV+ + V K +C SCA++ GCG +LN++ I + P Sbjct: 1 MLLETGRVVAVETDAVWVETIRKTTCGSCAAQKGCGHGLLNRISEGHRSLIRALPGGINP 60 Query: 55 CDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS--DVAALCGAIL 112 D + +V + I E +L +++VY+ PL+ + A+L L ++ D+ + GA+ Sbjct: 61 QDCRV--DDEVSISIPEAVILRGSMVVYILPLLLMLASAALGAKLLSTNVDLGSALGAVA 118 Query: 113 GGIGGFLIARGYSRKFAARAEWQPIILSV 141 G GF++ R ++ + QP ++ V Sbjct: 119 GITLGFVLVRVHAHRHRDDKNLQPTLVKV 147 >UniRef50_C6P3S2 Positive regulator of sigma E, RseC/MucC n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3S2_9PROT Length = 147 Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 7/128 (5%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLG-PQTTHTIVVPCDEPL 59 M++ A V+ A V C C S GCGS L KL V Sbjct: 1 MLEMRAIVIHVHGDSASVKPLGTGGCGHCDSEGGCGSGTLTKLFCSNKPRLFNVSNAARA 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLI-----ASLFQLLFASDVAALCGAILGG 114 + G +VE+ I +G+LL A+ +Y+ P+V L L+ + L D A+ GA+ G Sbjct: 61 MEGDEVEVTIPDGALLRGAMKMYVVPMV-LLLVGGAAGSGLATATVGHDAYAVVGALFGL 119 Query: 115 IGGFLIAR 122 GF+ A+ Sbjct: 120 AIGFIYAK 127 >UniRef50_Q3SH44 Putative positive regulator of sigma E activity n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SH44_THIDA Length = 144 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 49 HTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALC 108 +V CD L PG +V +GIA G++L SA+ Y L + A L Q L D AA+ Sbjct: 48 RQFLVDCDLSLSPGDRVIVGIARGTVLRSAIRAYGLALALMLGGALLGQALHPGDAAAVV 107 Query: 109 GAILG-GIGGFLIARGYS-RKFAARAEWQPII 138 G +LG +GG + + R R E P++ Sbjct: 108 GLVLGAALGGLFVRNARAPRPAVLRREPSPLL 139 >UniRef50_UPI0000E87B72 hypothetical protein MB2181_02975 n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87B72 Length = 143 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 6/145 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V+ ++ Q V C C GCG+ + K+ + + + + + Sbjct: 1 MIEEQAVVIFKEDDQVSVEIMRTKPCGLCGKTQGCGNSIWGKIFSHKRNKLSIKNNIGVK 60 Query: 61 PGQKVELGIAEG----SLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIG 116 G +V L I E S L L + +G+ + ++ Q SD+ L GAI G + Sbjct: 61 VGDRVMLTIEENYLLRSSLLLYGLPLLFLFIGMVFMDTITQK--NSDLWVLVGAIFGMLS 118 Query: 117 GFLIARGYSRKFAARAEWQPIILSV 141 G ++ + +RK R + +I + Sbjct: 119 GLILVKFLARKNHDRLYKEAMITKI 143 >UniRef50_A1S3X8 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Shewanella amazonensis SB2B RepID=A1S3X8_SHEAM Length = 159 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 8/146 (5%) Query: 1 MIKEWATVVSWQ-NGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 M++E A VV + +G V +VK +C CA+ CG+ + T + E Sbjct: 1 MMEELARVVRVETSGWVTVEVEVKTACGHCAASENCGTGAIASAFAGKTQQFSIKSAETF 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQ-----LLFASDVAALCGAILGG 114 G+ + LG+ E +LL +A LVY+ PLVGL L A + L F S+ A+L ++LG Sbjct: 61 ENGELIRLGLPESALLKAAALVYLLPLVGLLLGALGGKMAGSVLSFGSETASLVFSLLGA 120 Query: 115 IGGFLIARGYSRKFAARAEWQPIILS 140 I +L + ++ + QP+IL+ Sbjct: 121 IVAWLWGKRLAKNLERQT--QPVILA 144 >UniRef50_A1AWA8 Positive regulator of sigma E, RseC/MucC n=3 Tax=Gammaproteobacteria RepID=A1AWA8_RUTMC Length = 125 Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +KE V+ N + + C SC + +GCG+ +L Q + P + Sbjct: 1 MKEQFEVIEIDNEIMTLKVNQTGGCHSCEASSGCGTGILANYFNQYS-VFNKPYQNGVSV 59 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASL 95 G V L I+ L A ++Y++P++ LFL A++ Sbjct: 60 GDFVTLEISSSELFLRAFMLYIAPILTLFLGAAI 93 >UniRef50_B1KI54 Positive regulator of sigma E, RseC/MucC n=4 Tax=Shewanella RepID=B1KI54_SHEWM Length = 151 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 13/149 (8%) Query: 1 MIKEWATVV-SWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 M++E A V+ S G V VK +C+ C + CG+ ++K +P D Sbjct: 1 MMEEMAKVLESDGKGWVTVEVQVKNACNHCDNSESCGTSAVSKAFSPKVQRFSIPSDRQY 60 Query: 60 VPGQKVELGIAEGSLLSSA---LLVYMSPLVGLFLIASLFQLLF---ASDVAALCGAILG 113 G+ ++LG+ E LL +A L+ + L +AS +F + D + AI G Sbjct: 61 QAGELLKLGLPESVLLKAAALVYLLPLLGLFFGVAVASFITFMFNLTSGDFVVIPFAIAG 120 Query: 114 GIGGFLIARGYSRKFAARAE--WQPIILS 140 + A+G +K A R E QP+I+S Sbjct: 121 AL--LFWAKG--KKMAKRMEDDTQPVIIS 145 >UniRef50_C1D7K9 Positive regulator of sigma E, RseC/MucC n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D7K9_LARHH Length = 151 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 9/156 (5%) Query: 1 MIKEWATVVSWQ-NGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 MI+ A V+S A V SC+ C GC S +++L V Sbjct: 1 MIETEARVLSLDGESHAWVETRPHGSCALCEGGGGCKSVAISRLFATGQQRYRVANPVGA 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIG--- 116 G V + + E LL SAL +Y+ P++ LF A L + S+ A++ +LGG Sbjct: 61 AAGDWVIVAVHEQVLLKSALAMYLLPVLALFAGAVLGA--YWSEPASV---LLGGTAFAV 115 Query: 117 GFLIARGYSRKFAARAEWQPIILSVALPPGLVRFET 152 LI R + + R++++P I+ V P R T Sbjct: 116 MLLILRRMTANYTHRSDFEPAIIRVGSPRSGCRNRT 151 >UniRef50_C5JB30 Positive regulator of sigma E activity n=1 Tax=uncultured bacterium RepID=C5JB30_9BACT Length = 168 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 5/148 (3%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP--L 59 ++ +A VVS + G A + + +SC C S CG++ + P + L Sbjct: 17 LEGFARVVSLEGGTAWLEPEGMSSCGGCKSSGLCGTKGFFG---SSMDGRRFPLENKVGL 73 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G++V +G E SL+ +AL+ Y PL+ + + A + Q + SDV A+ GA+LG G L Sbjct: 74 TVGERVVVGTYEDSLMRAALVAYAVPLLVMLVAAVVGQAMTGSDVVAVGGAVLGLGLGIL 133 Query: 120 IARGYSRKFAARAEWQPIILSVALPPGL 147 +AR + + + R + P L A GL Sbjct: 134 LARLRAGRLSRRGDLTPRFLRRAYNEGL 161 >UniRef50_B8CXR4 Positive regulator of sigma E, RseC/MucC n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXR4_HALOH Length = 143 Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 15/143 (10%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL-- 59 ++E V+ + + V +++CS C + G G I V D + Sbjct: 1 MEELGKVIKTEGDKLTVKIIRRSACSKCGHKCGLA-------GAHEVDEIEVEVDNTVGA 53 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLV----GLFLIASLFQLL-FA-SDVAALCGAILG 113 GQ V+L + E L+ +++LVY+ P++ G F+ SL + L F S+ A + G+I+ Sbjct: 54 KEGQVVKLEMGEQPLVVASMLVYLLPIISLIAGYFITFSLVKALGFKPSEAAGVIGSIIF 113 Query: 114 GIGGFLIARGYSRKFAARAEWQP 136 I F + + + + ++ P Sbjct: 114 FILSFYLLKVVDKFLSFNRKYHP 136 >UniRef50_C4ZKS2 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thauera sp. MZ1T RepID=C4ZKS2_THASP Length = 155 Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 2/131 (1%) Query: 6 ATVVSWQNGQALVSCDVK-ASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQK 64 A ++ +NGQA V K C C GCGS ++ + +P D G Sbjct: 5 ARILRIENGQAWVKLSGKQGGCGRCDEPGGCGSVQISHVFGMPRDEFSIPADARFAAGDA 64 Query: 65 VELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGY 124 V + I +G+ L +AL+ Y + L + A+ LL G + GG+ G +A Sbjct: 65 VVIRIPDGAPLRAALVSYGLGTLLLLVGAAFGSLLGGVQHGDAWG-LAGGVAGLALAWVV 123 Query: 125 SRKFAARAEWQ 135 +R + W+ Sbjct: 124 NRMLSRSRNWR 134 >UniRef50_A9BGN6 Positive regulator of sigma E, RseC/MucC n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGN6_PETMO Length = 151 Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 14/144 (9%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGC----GSRVLNKLGPQTTHTIVVPCDE 57 ++E V+ + C SCA + GC G+ LN L + + V Sbjct: 1 MREVMDVIDKDESYVYLRTTRTQECESCAMKGGCTLLGGANELN-LKAKNIEKVDVK--- 56 Query: 58 PLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILG-GIG 116 G KV + + E ++ + L Y PL+ I S+ L SD+ + ILG GI Sbjct: 57 ---KGDKVVVELPEVPVVKLSFLAYGIPLIVFLSIVSILYTLGFSDIFSFLAGILGLGIT 113 Query: 117 GFLIARGYSRKFAARAEWQPIILS 140 FLI + Y RK + + P+IL Sbjct: 114 YFLIHQ-YDRK-KLKDRYLPVILQ 135 >UniRef50_A1K5Z5 Putative sigma-E factor regulatory protein RseC n=1 Tax=Azoarcus sp. BH72 RepID=A1K5Z5_AZOSB Length = 146 Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 36/77 (46%) Query: 6 ATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKV 65 A VV+ + G A V C C GC S L++ + +P D PG +V Sbjct: 5 AEVVAVRGGSAWVKVTRTGGCGRCDEPGGCRSFSLDQAFGRRDALFRLPNDIDARPGDRV 64 Query: 66 ELGIAEGSLLSSALLVY 82 ++ IAEG+ L +AL Y Sbjct: 65 DVLIAEGAPLRAALRSY 81 >UniRef50_B0MTP2 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MTP2_9BACT Length = 136 Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 8/106 (7%) Query: 18 VSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSS 77 V +C SC +R CG L + G + I P PG +V + I + + Sbjct: 20 VEITAHGACGSCKAREACG---LGQTGQKIVE-IRTPAAATYRPGDRVTVAITRRTGAVA 75 Query: 78 ALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARG 123 LL Y+ P V L + ++ LL A D A A+L G+G ++ G Sbjct: 76 VLLAYVVPFVVLIGVVAVCYLLGAGDGA----AVLAGLGSVVLYYG 117 >UniRef50_B0KB45 Positive regulator of sigma E, RseC/MucC n=10 Tax=Thermoanaerobacter RepID=B0KB45_THEP3 Length = 146 Score = 38.5 bits (88), Expect = 0.075, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 10/91 (10%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSC-ASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 +KE A VVS + QA V ++CS C A +G + L T+ V Sbjct: 1 MKERAIVVSKRGNQAEVEVIRTSACSKCRACSSGSNKQTLKVWAENETNAEV-------- 52 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFL 91 GQ VE+ + +LLS+ ++Y+ PL G L Sbjct: 53 -GQIVEIEMESRALLSATFILYVIPLAGFIL 82 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P46187 Sigma-E factor regulatory protein rseC n=137 Tax... 200 1e-50 UniRef50_B4F050 Sigma-E factor regulatory protein n=12 Tax=Enter... 174 1e-42 UniRef50_Q2BJ04 Positive regulator for alginate biosynthesis Muc... 164 1e-39 UniRef50_C7RA51 Positive regulator of sigma E, RseC/MucC n=1 Tax... 163 2e-39 UniRef50_Q57126 Putative uncharacterized protein Y1293 n=4 Tax=P... 162 4e-39 UniRef50_D0ZCZ8 SoxR reducing system protein n=2 Tax=Edwardsiell... 159 2e-38 UniRef50_B5JX05 Positive regulator of sigma E, RseC/MucC n=1 Tax... 159 3e-38 UniRef50_B8GPK5 Positive regulator of sigma E, RseC/MucC n=1 Tax... 158 5e-38 UniRef50_A6VUA3 Positive regulator of sigma E, RseC/MucC n=2 Tax... 158 7e-38 UniRef50_A6FDN4 Putative uncharacterized protein n=1 Tax=Moritel... 153 1e-36 UniRef50_Q1N1C0 Sigma factor algU negative regulatory protein Mu... 153 2e-36 UniRef50_C6CNL7 Positive regulator of sigma E, RseC/MucC n=8 Tax... 151 6e-36 UniRef50_A6VKY4 Positive regulator of sigma E, RseC/MucC n=3 Tax... 150 9e-36 UniRef50_Q0I574 Possible positive sigma-E factor regulatory prot... 150 9e-36 UniRef50_P44060 Uncharacterized protein HI0850 n=21 Tax=Haemophi... 147 1e-34 UniRef50_A0KGE9 Sigma-E factor regulatory protein RseC n=2 Tax=A... 145 3e-34 UniRef50_A1U2W9 Positive regulator of sigma E, RseC/MucC n=2 Tax... 145 5e-34 UniRef50_UPI0001AEB8D2 sigma-E factor regulatory protein RseC n=... 142 3e-33 UniRef50_Q0VP14 AlgM protein n=2 Tax=Alcanivorax RepID=Q0VP14_ALCBS 142 3e-33 UniRef50_C5SBU1 Positive regulator of sigma E, RseC/MucC n=1 Tax... 142 5e-33 UniRef50_C4LBZ5 Positive regulator of sigma E, RseC/MucC n=1 Tax... 141 8e-33 UniRef50_Q07YZ3 Positive regulator of sigma(E), RseC/MucC n=3 Ta... 140 1e-32 UniRef50_A0YCK5 Positive regulator for alginate biosynthesis Muc... 140 2e-32 UniRef50_Q2SL37 Sigma factor algU negative regulatory protein Mu... 140 2e-32 UniRef50_Q15R30 Positive regulator of sigma E, RseC/MucC n=1 Tax... 138 6e-32 UniRef50_Q12KH8 Positive regulator of sigma(E), RseC/MucC n=15 T... 137 1e-31 UniRef50_B7UYX7 Positive regulator for alginate biosynthesis Muc... 137 1e-31 UniRef50_B3PJ98 Positive regulator for alginate biosynthesis Muc... 137 2e-31 UniRef50_C5BRN1 Positive regulator for alginate biosynthesis Muc... 137 2e-31 UniRef50_B4RVA9 Sigma-E factor regulatory protein RseC n=1 Tax=A... 135 3e-31 UniRef50_Q0A8Z6 Positive regulator of sigma E, RseC/MucC n=1 Tax... 133 1e-30 UniRef50_C1DQR8 Positive regulator for alginate biosynthesis Muc... 133 1e-30 UniRef50_D0I4M3 Sigma factor RpoE regulatory protein RseC n=1 Ta... 133 2e-30 UniRef50_B7RX57 Positive regulator of sigma(E), RseC/MucC superf... 133 2e-30 UniRef50_Q3IDL5 Putative regulator of sigma E (Sigma 24) factor ... 132 5e-30 UniRef50_Q1ZCS1 RNA polymerase sigma-70 factor n=1 Tax=Psychromo... 132 5e-30 UniRef50_Q5E311 Sigma-E factor regulatory protein RseC n=38 Tax=... 131 7e-30 UniRef50_Q1YS34 Positive regulator for alginate biosynthesis Muc... 131 9e-30 UniRef50_Q7VM35 Possible sigma-E factor regulatory protein n=1 T... 131 1e-29 UniRef50_Q47WP1 Sigma-E factor regulatory protein RseC n=1 Tax=C... 130 1e-29 UniRef50_A4BBJ3 Positive regulator for alginate biosynthesis Muc... 128 5e-29 UniRef50_A1SR27 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 128 6e-29 UniRef50_A0Y589 Putative regulator of sigma E (Sigma 24) factor ... 127 9e-29 UniRef50_A0Z443 Sigma factor algU negative regulatory protein Mu... 126 2e-28 UniRef50_C5S2D5 Sigma-E factor regulatory protein n=2 Tax=Actino... 125 4e-28 UniRef50_B8F3K6 Sigma-E factor regulatory protein n=7 Tax=Pasteu... 125 5e-28 UniRef50_B9ZJG2 Positive regulator of sigma E, RseC/MucC n=1 Tax... 124 1e-27 UniRef50_C0N4S0 Positive regulator of sigma(E), RseC/MucC superf... 123 2e-27 UniRef50_A3JFQ7 Sigma factor algU negative regulatory protein Mu... 121 7e-27 UniRef50_C6WX93 Positive regulator of sigma E, RseC/MucC n=1 Tax... 119 3e-26 UniRef50_D0KYN1 Positive regulator of sigma E, RseC/MucC n=1 Tax... 117 2e-25 UniRef50_Q2W409 Positive regulator of sigma E activity n=2 Tax=M... 116 2e-25 UniRef50_Q21IH1 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 116 2e-25 UniRef50_B6BUJ9 Positive regulator of sigma(E), RseC/MucC superf... 116 3e-25 UniRef50_Q31HP7 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 115 5e-25 UniRef50_Q608M2 Sigma factor regulator MucC n=1 Tax=Methylococcu... 115 6e-25 UniRef50_C5V4B5 Positive regulator of sigma E, RseC/MucC n=1 Tax... 113 1e-24 UniRef50_A4A3V0 Positive regulator of sigma(E), RseC/MucC n=2 Ta... 113 1e-24 UniRef50_Q47EG3 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 109 2e-23 UniRef50_UPI0000E11529 positive regulator of sigma E, RseC/MucC ... 109 3e-23 UniRef50_C6P606 Positive regulator of sigma E, RseC/MucC n=1 Tax... 106 3e-22 UniRef50_Q47FZ1 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 103 2e-21 UniRef50_Q5R103 Positive regulator of sigma E activity n=2 Tax=I... 101 5e-21 UniRef50_A6TQP8 Positive regulator of sigma E, RseC/MucC n=1 Tax... 100 2e-20 UniRef50_C7RTN3 Positive regulator of sigma E, RseC/MucC n=1 Tax... 87 2e-16 Sequences not found previously or not previously below threshold: UniRef50_C1D7K9 Positive regulator of sigma E, RseC/MucC n=1 Tax... 113 2e-24 UniRef50_B8KRG3 Positive regulator of sigma E, RseC/MucC n=1 Tax... 110 1e-23 UniRef50_C5JB30 Positive regulator of sigma E activity n=1 Tax=u... 109 2e-23 UniRef50_C6P3S2 Positive regulator of sigma E, RseC/MucC n=1 Tax... 104 1e-21 UniRef50_B1KI54 Positive regulator of sigma E, RseC/MucC n=4 Tax... 103 1e-21 UniRef50_A1S3X8 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 103 2e-21 UniRef50_A8ZW82 Positive regulator of sigma E, RseC/MucC n=1 Tax... 101 1e-20 UniRef50_UPI0000E87B72 hypothetical protein MB2181_02975 n=1 Tax... 98 8e-20 UniRef50_A0L8I7 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 96 3e-19 UniRef50_A1AWA8 Positive regulator of sigma E, RseC/MucC n=3 Tax... 95 8e-19 UniRef50_C8WDZ8 Positive regulator of sigma E, RseC/MucC n=5 Tax... 95 8e-19 UniRef50_Q3J8D0 Positive regulator of sigma(E), RseC/MucC n=2 Ta... 91 9e-18 UniRef50_B8CXR4 Positive regulator of sigma E, RseC/MucC n=1 Tax... 91 1e-17 UniRef50_C5CGF6 Positive regulator of sigma E, RseC/MucC n=1 Tax... 89 3e-17 UniRef50_A8MGM3 Positive regulator of sigma E, RseC/MucC n=1 Tax... 89 4e-17 UniRef50_C6PD09 Positive regulator of sigma E, RseC/MucC n=1 Tax... 89 5e-17 UniRef50_C4ZKS2 Positive regulator of sigma E, RseC/MucC n=1 Tax... 89 7e-17 UniRef50_A1HP18 Positive regulator of sigma E, RseC/MucC n=2 Tax... 87 2e-16 UniRef50_B9Z3B2 Positive regulator of sigma E, RseC/MucC n=1 Tax... 85 8e-16 UniRef50_Q3A3J1 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 85 9e-16 UniRef50_B2A247 Positive regulator of sigma E, RseC/MucC n=1 Tax... 85 9e-16 UniRef50_B0KB45 Positive regulator of sigma E, RseC/MucC n=10 Ta... 84 1e-15 UniRef50_C0GG18 Positive regulator of sigma E, RseC/MucC n=1 Tax... 84 2e-15 UniRef50_A6TT71 Positive regulator of sigma E, RseC/MucC n=2 Tax... 81 1e-14 UniRef50_Q0F133 Positive regulator for alginate biosynthesis Muc... 81 1e-14 UniRef50_B8FIP7 Positive regulator of sigma E, RseC/MucC n=1 Tax... 80 2e-14 UniRef50_A1K5Z5 Putative sigma-E factor regulatory protein RseC ... 80 3e-14 UniRef50_C1SHU9 Positive regulator of sigma E activity n=1 Tax=D... 78 7e-14 UniRef50_B7VK82 Sigma-E factor regulatory protein RseC n=17 Tax=... 78 9e-14 UniRef50_B0S1N4 Putative uncharacterized protein n=2 Tax=Finegol... 77 2e-13 UniRef50_D2C475 Positive regulator of sigma E, RseC/MucC n=5 Tax... 77 2e-13 UniRef50_B0MTP2 Putative uncharacterized protein n=1 Tax=Alistip... 76 4e-13 UniRef50_C9XNA0 Putative regulator of the sigma(E) factor n=6 Ta... 76 4e-13 UniRef50_A5N7M4 Predicted sigma factor n=3 Tax=Clostridium RepID... 76 4e-13 UniRef50_B9K8X8 Positive regulator of sigma E, RseC/MucC n=1 Tax... 75 7e-13 UniRef50_A8F5Q6 Positive regulator of sigma E, RseC/MucC n=1 Tax... 74 1e-12 UniRef50_C3KTB5 Sigma-E factor regulator, RseC/MucC family n=9 T... 73 2e-12 UniRef50_B0VG53 Putative uncharacterized protein n=1 Tax=Candida... 73 3e-12 UniRef50_A9BGN6 Positive regulator of sigma E, RseC/MucC n=1 Tax... 72 5e-12 UniRef50_C7RQJ9 Positive regulator of sigma E, RseC/MucC n=1 Tax... 72 6e-12 UniRef50_A1K2X1 Hypothetical sigma-E factor regulatory protein n... 72 8e-12 UniRef50_B7IFW0 Positive regulator of sigma(E), RseC/MucC superf... 72 8e-12 UniRef50_C3WAC7 Predicted protein n=1 Tax=Fusobacterium mortifer... 72 9e-12 UniRef50_D1VS59 Positive regulator of sigma E, RseC/MucC n=1 Tax... 71 9e-12 UniRef50_C8X3U0 Positive regulator of sigma E, RseC/MucC n=1 Tax... 70 2e-11 UniRef50_Q5P0C6 Putative uncharacterized protein rseC n=1 Tax=Ar... 70 2e-11 UniRef50_A6LJM2 Positive regulator of sigma E, RseC/MucC n=1 Tax... 69 5e-11 UniRef50_Q5P540 Putative uncharacterized protein n=1 Tax=Aromato... 68 6e-11 UniRef50_A5TTG9 Putative uncharacterized protein n=13 Tax=Fusoba... 68 9e-11 UniRef50_A0Q1V3 Positive regulator of sigma(E), RseC/MucC superf... 68 1e-10 UniRef50_A7HN74 Positive regulator of sigma E, RseC/MucC n=1 Tax... 68 1e-10 UniRef50_Q47FX5 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 67 2e-10 UniRef50_Q52718 Nitrogen fixation protein rnfF n=8 Tax=Rhodobact... 67 2e-10 UniRef50_C0QGD3 RseC n=1 Tax=Desulfobacterium autotrophicum HRM2... 67 2e-10 UniRef50_A8SN65 Putative uncharacterized protein n=1 Tax=Parvimo... 67 3e-10 UniRef50_Q893Q4 Putative uncharacterized protein n=1 Tax=Clostri... 66 3e-10 UniRef50_A4WXF8 Ferredoxin n=1 Tax=Rhodobacter sphaeroides ATCC ... 66 4e-10 UniRef50_B5YEQ6 Positive regulator of sigma(E), RseC/MucC superf... 65 6e-10 UniRef50_C2CFQ3 Putative uncharacterized protein n=2 Tax=Anaeroc... 65 8e-10 UniRef50_A1WTS2 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 65 9e-10 UniRef50_C7RHI1 Positive regulator of sigma E, RseC/MucC n=1 Tax... 64 1e-09 UniRef50_D1PFH5 Positive regulator of sigma(E), RseC/MucC superf... 64 1e-09 UniRef50_C0QLI1 SigE n=1 Tax=Desulfobacterium autotrophicum HRM2... 64 2e-09 UniRef50_Q3SH44 Putative positive regulator of sigma E activity ... 62 5e-09 UniRef50_C0QX76 Putative positive regulator of sigma E, RseC/Muc... 62 9e-09 UniRef50_C8WYR6 Positive regulator of sigma E, RseC/MucC n=1 Tax... 61 1e-08 UniRef50_B3QTB7 Positive regulator of sigma E, RseC/MucC n=1 Tax... 59 5e-08 UniRef50_Q8AA49 Positive regulator of sigma(E) n=29 Tax=Bacteroi... 58 7e-08 UniRef50_A6L9C9 Putative uncharacterized protein n=6 Tax=Bactero... 58 7e-08 UniRef50_A4SEA5 Putative uncharacterized protein n=1 Tax=Chlorob... 50 2e-05 UniRef50_A5EW01 Putative uncharacterized protein n=1 Tax=Dichelo... 48 1e-04 UniRef50_B4S8E6 Positive regulator of sigma E, RseC/MucC n=2 Tax... 45 6e-04 UniRef50_C0WDT2 Putative uncharacterized protein n=1 Tax=Acidami... 45 0.001 UniRef50_Q3B3R6 Putative uncharacterized protein n=1 Tax=Chlorob... 44 0.001 UniRef50_D2RM84 Putative uncharacterized protein n=1 Tax=Acidami... 44 0.002 UniRef50_B2RLD4 Putative uncharacterized protein n=2 Tax=Porphyr... 43 0.003 UniRef50_B3EIX5 Positive regulator of sigma(E) RseC/MucC n=1 Tax... 43 0.003 UniRef50_D1PYB9 Putative uncharacterized protein n=1 Tax=Prevote... 43 0.004 UniRef50_A4AT37 Ferredoxin n=1 Tax=Flavobacteriales bacterium HT... 43 0.004 UniRef50_Q67R13 Putative uncharacterized protein n=1 Tax=Symbiob... 41 0.011 UniRef50_C3JD66 Positive regulator of sigma(E), RseC/MucC family... 39 0.055 UniRef50_C9P1L6 Putative uncharacterized protein n=1 Tax=Vibrio ... 39 0.065 UniRef50_C2MBZ9 Putative uncharacterized protein n=1 Tax=Porphyr... 38 0.074 UniRef50_D0LYM0 SNARE associated Golgi protein-like protein n=1 ... 38 0.077 >UniRef50_P46187 Sigma-E factor regulatory protein rseC n=137 Tax=Enterobacteriaceae RepID=RSEC_ECOLI Length = 159 Score = 200 bits (509), Expect = 1e-50, Method: Composition-based stats. Identities = 159/159 (100%), Positives = 159/159 (100%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV Sbjct: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI Sbjct: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ 159 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ Sbjct: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ 159 >UniRef50_B4F050 Sigma-E factor regulatory protein n=12 Tax=Enterobacteriaceae RepID=B4F050_PROMH Length = 154 Score = 174 bits (441), Expect = 1e-42, Method: Composition-based stats. Identities = 72/151 (47%), Positives = 109/151 (72%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+KEWATVV WQ G+AL+ + C SC +RA CGS +LNK+GP+T H + +P ++PLV Sbjct: 1 MVKEWATVVHWQQGRALLRYGSSSGCGSCQARAACGSYLLNKIGPETVHQLELPVEQPLV 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 GQKVE+GI E SLL SA+LVY++PL+GLF++A + L +S++A C ++GG+ GFL+ Sbjct: 61 VGQKVEVGIPENSLLRSAMLVYLTPLLGLFIVAGIASLWLSSELAIFCSGLVGGVLGFLL 120 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFE 151 A+ +R ++ ++PIIL + LPP ++ + Sbjct: 121 AKNIARWWSKDEGFEPIILQIGLPPNELQVQ 151 >UniRef50_Q2BJ04 Positive regulator for alginate biosynthesis MucC n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ04_9GAMM Length = 144 Score = 164 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 2/143 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVV--PCDEP 58 MI+E VV V +++C+SCA+R GCG ++L G V P D Sbjct: 1 MIEEQGKVVEIDATGVWVETVRQSACASCAARNGCGQKLLASAGQGKRFIFRVNNPDDII 60 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF 118 + V LGI EG+ L + L +Y+ PL+ LF+ A + LF +++A + + L F Sbjct: 61 VHENDDVLLGIEEGAFLRATLFMYLIPLLALFVGAVIGNYLFVNEIATIVFSFLALTLSF 120 Query: 119 LIARGYSRKFAARAEWQPIILSV 141 + R S+ +QP+++ V Sbjct: 121 VFVRYGSQPLFRSYRYQPVLMKV 143 >UniRef50_C7RA51 Positive regulator of sigma E, RseC/MucC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA51_KANKD Length = 163 Score = 163 bits (412), Expect = 2e-39, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 2/158 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+ E VV+ + V + CSSC + CGS +++K + Sbjct: 6 MLTELGHVVAKEKDTVWVQTQSRTGCSSCQVNSVCGSGIVSKAFSHKVFITPLKNHINAN 65 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA--SDVAALCGAILGGIGGF 118 +VE+GI E ++ ++ +VY+ PL+ + + ++Q L S+++++ A+ G GF Sbjct: 66 IDDEVEVGIPEDLVVRASFMVYLVPLISMIIALLVWQFLLTNPSELSSILAAVAGLAIGF 125 Query: 119 LIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSED 156 +I YSR A + + +P++L + P V+ ++ D Sbjct: 126 VITHFYSRSAAEKGQTEPVLLRIVKRPIAVKQIETTLD 163 >UniRef50_Q57126 Putative uncharacterized protein Y1293 n=4 Tax=Photobacterium RepID=Q57126_PHOPR Length = 165 Score = 162 bits (409), Expect = 4e-39, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 5/150 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++ ATV++ + G VSC + SC CASR CG+ ++ K P H + + D+PL Sbjct: 1 MMRTLATVIAVEQGSVTVSCQQQTSCGHCASRDNCGTGIVTKAIPGRAHQVTLATDKPLT 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF-----ASDVAALCGAILGGI 115 G+ VE+G++E S+LSSALLVY+ PL+ L L A + Q F S++ + +++ Sbjct: 61 IGEIVEIGLSEKSMLSSALLVYIVPLLFLVLGAVVGQWWFVDLAGTSELGVIITSMVSAA 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALPP 145 G L+AR Y+++ ++++P ++ V P Sbjct: 121 IGLLLARQYAKRLDGNSDYEPSLIRVLGQP 150 >UniRef50_D0ZCZ8 SoxR reducing system protein n=2 Tax=Edwardsiella RepID=D0ZCZ8_EDWTE Length = 158 Score = 159 bits (403), Expect = 2e-38, Method: Composition-based stats. Identities = 73/156 (46%), Positives = 104/156 (66%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++EWATV+SW+ G+AL+ C+ A CS C +R GCGS L +LGPQT H + + +PL Sbjct: 1 MMREWATVISWRQGEALLQCEAHAGCSGCRARQGCGSAALAELGPQTRHQLRLAVSQPLQ 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 PGQ+VE+G+ E S+L SALLVY++PLVGL QL SD A+ A+ GG+ GF + Sbjct: 61 PGQRVEIGLQEASVLRSALLVYITPLVGLLGGGGAGQLWLGSDGASALCALAGGVLGFTL 120 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSED 156 AR ++R+ A +QP++L VALP +R T+ + Sbjct: 121 ARRWARRMAQGEAYQPVLLQVALPSSQLRSITNPPN 156 >UniRef50_B5JX05 Positive regulator of sigma E, RseC/MucC n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JX05_9GAMM Length = 156 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 1/144 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E ATV + ++ A V +C SC+++ GCG+ L K+ + + Sbjct: 1 MIEEQATVTAVEDDYAWVQTQRSTACDSCSAQKGCGTSTLGKVIGRQYTQVRALNSSGAQ 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASD-VAALCGAILGGIGGFL 119 G +V +G+AE LL S+L VY+ P+ + + L A + + A + LG GF+ Sbjct: 61 VGDEVMVGLAEDMLLKSSLAVYLVPIALMLMGGVLGDYWSAGNSLYAALASGLGLAFGFV 120 Query: 120 IARGYSRKFAARAEWQPIILSVAL 143 + +S K + +QP++L V + Sbjct: 121 WIQWFSHKISHNERFQPVVLRVLV 144 >UniRef50_B8GPK5 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPK5_THISH Length = 157 Score = 158 bits (400), Expect = 5e-38, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 2/144 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V+S + G A V +++C SCA+ GCG+ V+ K+ + + Sbjct: 1 MIEEQARVISVEQGHAWVETQRRSTCGSCAANKGCGTSVIAKMVGNRRSRVRAIDPVGVR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF--ASDVAALCGAILGGIGGF 118 G +V +GI E +L+ +L VY PL+ L + A L + L+ A + + + G G Sbjct: 61 LGDEVVVGIEEAALVRGSLAVYTVPLITLLVGALLARWLWPAAGEPVVVLSGLAGLAAGL 120 Query: 119 LIARGYSRKFAARAEWQPIILSVA 142 + R ++ + ++ +QP+IL Sbjct: 121 VWLRLFAGRVSSDPRYQPVILRRL 144 >UniRef50_A6VUA3 Positive regulator of sigma E, RseC/MucC n=2 Tax=Marinomonas RepID=A6VUA3_MARMS Length = 155 Score = 158 bits (399), Expect = 7e-38, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 74/141 (52%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E V+S ++G A V +SC+SC +R GCG + ++ + + Sbjct: 1 MIEETGRVLSIEDGFANVETIRTSSCTSCRARHGCGHHAIAQVSSSNRMRMRAIDPLSVE 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 GQ V +GI E +LL +++ +Y+ PL+GL A + L A+ +I+G +GG L+ Sbjct: 61 VGQSVVVGIPEDTLLQASVWMYLIPLLGLVGGAVIPSLWGGESGIAVIFSIIGFVGGLLL 120 Query: 121 ARGYSRKFAARAEWQPIILSV 141 AR S++ ++ P IL + Sbjct: 121 ARNKSKQEMNNLDYYPKILRI 141 >UniRef50_A6FDN4 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FDN4_9GAMM Length = 173 Score = 153 bits (388), Expect = 1e-36, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 5/153 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E A V S Q V C+ +++C+ C + CG+ ++ K P TH V +V Sbjct: 15 MIIETAIVKSVIGDQVSVQCESQSACNHCHASDNCGTGMVAKAFPHRTHRFTVTKTADVV 74 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-----FASDVAALCGAILGGI 115 G K+E+G+ E +L++SA+LVY+ PL + L L Q L F + + A +GG Sbjct: 75 AGDKIEIGLREKNLVTSAMLVYLLPLATILLSLGLGQYLSQVFQFEGEGLVILAAFVGGY 134 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALPPGLV 148 GF R S F R +++P +L V ++ Sbjct: 135 IGFSCTRKLSVIFDQRFDFKPKMLGVVAQSEVI 167 >UniRef50_Q1N1C0 Sigma factor algU negative regulatory protein MucC n=1 Tax=Bermanella marisrubri RepID=Q1N1C0_9GAMM Length = 155 Score = 153 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 1/143 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V+ + V +++C SC ++ GCG +L K+G + + D L Sbjct: 1 MIEETAKVIRVDDNWVWVRAIAQSACGSCQAQKGCGHSLLAKVGQRQIDIQLPRQDYELS 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 V +G+ E ++L S+LL+Y PL+ + ++A L ++ ++ A + A L I GF Sbjct: 61 VNDDVIIGVPEQAVLRSSLLMYGVPLLLMLVVAGLASVMSLAEGAVILLAFLALISGFFY 120 Query: 121 ARGYSRKFAARAEWQPIILSVAL 143 +S A EW P I+ AL Sbjct: 121 VSRWSNT-ARIEEWHPRIIRKAL 142 >UniRef50_C6CNL7 Positive regulator of sigma E, RseC/MucC n=8 Tax=Enterobacteriaceae RepID=C6CNL7_DICZE Length = 156 Score = 151 bits (382), Expect = 6e-36, Method: Composition-based stats. Identities = 73/155 (47%), Positives = 103/155 (66%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MIKEWATVVSWQ G A++ C+ ++ C SC SR+ CG+ +LN++G TH + VP +PL+ Sbjct: 1 MIKEWATVVSWQAGIAVLHCEQRSGCQSCQSRSSCGTGLLNQIGGAATHQLTVPYAQPLL 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 PGQ+VE+G+AE SLL SA+LVY+ PL+GL L A+L Q S+ A + GA G F + Sbjct: 61 PGQRVEVGLAESSLLRSAMLVYLLPLLGLMLGAALMQYWLNSEPATVAGAFAGVALSFAV 120 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSE 155 + S K +QP+IL V+LP L+R + + E Sbjct: 121 VKRLSAKIGNNQRYQPVILQVSLPENLLRTDMTPE 155 >UniRef50_A6VKY4 Positive regulator of sigma E, RseC/MucC n=3 Tax=Pasteurellaceae RepID=A6VKY4_ACTSZ Length = 144 Score = 150 bits (380), Expect = 9e-36, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 1/142 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKL-GPQTTHTIVVPCDEPL 59 M+ E A VV + +G+A V C K++C +C +R CG+ L L G Q H V P+ Sbjct: 1 MMTETAVVVYYDDGKATVKCQTKSACGNCTARNACGTAALAGLTGEQGEHLFAVETLTPV 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 GQ VE+G+ E SL++SA +Y PLV L + + + +++ F+ Sbjct: 61 KRGQLVEIGLPERSLMASAFWLYAVPLVTLLIATFVGEAWLPNELIRTIFIFFLTALSFI 120 Query: 120 IARGYSRKFAARAEWQPIILSV 141 I + ++RK A ++ +QP++L + Sbjct: 121 IVKIFTRKAARKSAFQPVLLRI 142 >UniRef50_Q0I574 Possible positive sigma-E factor regulatory protein n=5 Tax=Pasteurellaceae RepID=Q0I574_HAES1 Length = 167 Score = 150 bits (380), Expect = 9e-36, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 1/142 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTT-HTIVVPCDEPL 59 M+ E A V+++ G+A V C K +CS C ++ CG+ L++L ++ H +V PL Sbjct: 24 MLTERAIVIAYHQGKATVKCQSKNACSQCTAKNTCGTSALSELTGKSPEHIFIVNSLIPL 83 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 GQ VELG+ E SL+S+ALL+Y+ PL+ L + +F+ ++ + F+ Sbjct: 84 KIGQIVELGLQESSLISTALLLYIIPLMTLLSATLIANQIFSQELWGAIFILFCTALSFV 143 Query: 120 IARGYSRKFAARAEWQPIILSV 141 + YS+K+ + +QPI+L + Sbjct: 144 LIHSYSKKWQHKKAFQPILLRI 165 >UniRef50_P44060 Uncharacterized protein HI0850 n=21 Tax=Haemophilus influenzae RepID=Y850_HAEIN Length = 144 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 82/143 (57%), Gaps = 1/143 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKL-GPQTTHTIVVPCDEPL 59 M++E A V+S++NG A V C +++C CA++ CG+ L++L G + H V PL Sbjct: 1 MLRESAVVISYENGIAKVKCQSQSACGQCAAKNSCGTSSLSELNGKRGEHIFNVETLMPL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 GQ VE+G+ E S+L SALL+Y+ PL+ L ++ L + +++ F+ Sbjct: 61 REGQIVEIGLEEKSMLLSALLMYVVPLLTLLIVTMLSDYISDNEILRAILIFGLTALSFI 120 Query: 120 IARGYSRKFAARAEWQPIILSVA 142 + + YSRK + E+QP++L V Sbjct: 121 LVKSYSRKLGQQTEFQPVLLRVL 143 >UniRef50_A0KGE9 Sigma-E factor regulatory protein RseC n=2 Tax=Aeromonas RepID=A0KGE9_AERHH Length = 153 Score = 145 bits (367), Expect = 3e-34, Method: Composition-based stats. Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 6/149 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M +E ATVV+ A V C+ +++CS C ++ CG+ + K P + V + Sbjct: 1 MSEELATVVAIDGQHAWVECERRSACSGCHQQSNCGTGTVAKAFPLQAQRLRVALTIEVS 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLV-----GLFLIASLFQLLFASDVAALCGAILGGI 115 GQ+V LGI + S+L A LVY+ PL L L LL A + + +LGG+ Sbjct: 61 VGQQVRLGIPQASILQGAALVYVLPLFCLLAGALLGQLWLAPLLSAGEGVTILSCLLGGL 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALP 144 GF + R +S + A + P +L V LP Sbjct: 121 IGFSLVRYFSNRLDQGA-YGPRMLGVVLP 148 >UniRef50_A1U2W9 Positive regulator of sigma E, RseC/MucC n=2 Tax=Marinobacter RepID=A1U2W9_MARAV Length = 149 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E VV+ Q V ++C SC++R+GCG R L + + ++V Sbjct: 1 MITETGKVVALVGDQVWVQTIRTSACQSCSARSGCGQRALAAVSGGRANQVLVDNSVGAR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-FASDVAALCGAILGGIGGFL 119 G +V +G+ E SLL+++L++Y PLV + L + + SD+ A+ GA+ G GF Sbjct: 61 VGDEVVIGLDEQSLLNASLIIYGLPLVLMVLASVMAHNWAAGSDLGAIAGAVAGLGVGFW 120 Query: 120 IARGYSRKFAARAEWQPIILSVALPPG 146 + + + + A +QP +L + P Sbjct: 121 LVQRW--QAGAGDRYQPRLLRIKTIPS 145 >UniRef50_UPI0001AEB8D2 sigma-E factor regulatory protein RseC n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEB8D2 Length = 153 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 4/143 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E ATVV+ V +K++C++C +++ CG+ V+++ T + + P+ Sbjct: 1 MIRETATVVAVNGDTVTVEAAIKSTCNACQAQSDCGTGVISRALAPKTQQLTLRTPMPVR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAA--LCGAILGGIGGF 118 GQ+V +GI E +LS++ +Y+ PL+ S+ L +S+ L + G+ F Sbjct: 61 VGQEVTVGIPEAGVLSASAWLYLLPLIAFIGAYSVSISLLSSNGFTHELWAMLPSGLVTF 120 Query: 119 LIARGYSRKFAA--RAEWQPIIL 139 + + K R ++QP++L Sbjct: 121 FAYKLIAYKLRRVERTKYQPVLL 143 >UniRef50_Q0VP14 AlgM protein n=2 Tax=Alcanivorax RepID=Q0VP14_ALCBS Length = 156 Score = 142 bits (358), Expect = 3e-33, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 1/143 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++E VV+ + G V ++C +C ++AGCG ++N+ + VP + Sbjct: 1 MLEEQGIVVAVEPGAIWVETVRASTCGACKAKAGCGHHLINEQQSGQRARLRVPSQDSHQ 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDV-AALCGAILGGIGGFL 119 G V + + EG+L+ AL VY PLV LF A L L V A+ + G GF Sbjct: 61 VGDTVNVALPEGALMRGALWVYGLPLVLLFAGALLGSALPIEMVDASAVLGMAGLFLGFA 120 Query: 120 IARGYSRKFAARAEWQPIILSVA 142 I R SR+ +QP ++ A Sbjct: 121 INRVMSRRAGHTQAYQPRVVPAA 143 >UniRef50_C5SBU1 Positive regulator of sigma E, RseC/MucC n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBU1_CHRVI Length = 166 Score = 142 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 2/144 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E +++ QA V+ + +++C C+ CG+ +L ++ + ++ Sbjct: 1 MIEERGRIIALVGDQARVTAERRSACGQCSVNNACGTSLLERVFGRHPVELLARNPIGAQ 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS--DVAALCGAILGGIGGF 118 G +V +G++E LL +A Y+ P++ L L A+L + + DVA++ GA++G F Sbjct: 61 VGDEVVVGLSEQGLLRTAAAAYLVPILALILGATLGERFGGAYPDVASVLGALIGLALAF 120 Query: 119 LIARGYSRKFAARAEWQPIILSVA 142 RGYS R E QP+IL Sbjct: 121 WWLRGYSVTLTRRPERQPVILRRL 144 >UniRef50_C4LBZ5 Positive regulator of sigma E, RseC/MucC n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBZ5_TOLAT Length = 153 Score = 141 bits (355), Expect = 8e-33, Method: Composition-based stats. Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 4/147 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCG-SRVLNKLGPQTTHTIVVPCDEPL 59 MI+ ATVV+ + G V ++C C ++ C S ++ H I + C PL Sbjct: 1 MIEAIATVVATRAGYVSVEYQRASACGHCHHQSSCAISSGMDDGQGHGDHIIDIACILPL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF--ASDVAALCGAILGGIGG 117 GQ+V +GI E LL ALLVY+ PL + L A + Q + A+ GA+LGG G Sbjct: 61 EIGQQVRVGIPENGLLKGALLVYILPLFFIMLGAGIGQAFSVAGEEWPAIAGAVLGGYVG 120 Query: 118 FLIARGYSRKFAARAEWQPIILSVALP 144 F++ R S + AE++P+IL V +P Sbjct: 121 FMLMRLRSARL-TNAEYKPVILGVTIP 146 >UniRef50_Q07YZ3 Positive regulator of sigma(E), RseC/MucC n=3 Tax=Shewanella RepID=Q07YZ3_SHEFN Length = 168 Score = 140 bits (353), Expect = 1e-32, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 7/150 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++E A VV +Q G V ++K++C+ CAS CG+ + K T +P ++P Sbjct: 13 MMEEIARVVDYQQGWVTVEVELKSACNHCASSENCGTSTIAKAFSVHTQRFSLPSEKPCH 72 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS-----DVAALCGAILGGI 115 G +++G+ E ++ +A LVY+ PL+GLFL A + +L A + A+ LG + Sbjct: 73 SGDLLKIGLPESVIIKAAALVYLLPLIGLFLSAMIGHMLAAGIGLSTNGFAMAFGALGAL 132 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALPP 145 + I + ++ + A A P+I++ Sbjct: 133 VAWFIGKHFATELEAHA--TPVIIAYLGQE 160 >UniRef50_A0YCK5 Positive regulator for alginate biosynthesis MucC n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCK5_9GAMM Length = 160 Score = 140 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 4/143 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVV----PCD 56 M+KE + + + V + +C+SC+++ GCG +L K+G +H + V Sbjct: 1 MMKETGRIAAIEPDCLWVETIRQTTCNSCSAQKGCGHGILGKIGSGKSHYVRVLLGGSSP 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIG 116 E V +++ I E SL++ A++VY+ P++ + A + D G+++G I Sbjct: 61 EQFVVDDDIDIVIPESSLVAGAMVVYLVPIITMLTAAITVSQWQSGDFWVFSGSVVGFIA 120 Query: 117 GFLIARGYSRKFAARAEWQPIIL 139 G + R ++ +QP++L Sbjct: 121 GLGLVRWHALNNRNNQNYQPVVL 143 >UniRef50_Q2SL37 Sigma factor algU negative regulatory protein MucC n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SL37_HAHCH Length = 144 Score = 140 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 77/141 (54%), Gaps = 1/141 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E VV+ + + V ++ C SC++R GCGSR+LN++ + I V + Sbjct: 1 MILETGKVVAVGDHEVWVRTIRESVCQSCSARKGCGSRLLNQMSNGASTQIKVAKTFDVE 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLF-QLLFASDVAALCGAILGGIGGFL 119 G +VE+G+AE +LL+++LLVY++PLV + ++A + LL D+ + G GF+ Sbjct: 61 VGDEVEIGVAEQALLNASLLVYLTPLVAMMILAGVSRSLLHWPDLGVALAGLSGLGLGFV 120 Query: 120 IARGYSRKFAARAEWQPIILS 140 + S + + + P +L Sbjct: 121 FVKILSSRLSCNPTYHPQLLR 141 >UniRef50_Q15R30 Positive regulator of sigma E, RseC/MucC n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15R30_PSEA6 Length = 167 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 86/160 (53%), Gaps = 11/160 (6%) Query: 1 MIKEWATVVSWQNGQ----ALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD 56 MI+E TV+ Q ++ VK++C SC ++ CG+ V+ + + +PC+ Sbjct: 1 MIEEVGTVIDVQMRHEHQFIKIATQVKSTCGSCHAKDNCGTGVIARALANKRDALWLPCE 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS-----DVAALCGAI 111 E + GQ V+LGI E LLS++LLVYM PL+ + ++A+ LL +S + + ++ Sbjct: 61 ESVAVGQDVKLGIPESMLLSASLLVYMLPLLTMIVVATTSTLLLSSYSIEGEGWVILSSM 120 Query: 112 LGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFE 151 + + FL + Y + + +++P +L+V LP R + Sbjct: 121 VAAVVSFLGVKRYI-SGSTKTQFEPHLLAV-LPSLKTRVD 158 >UniRef50_Q12KH8 Positive regulator of sigma(E), RseC/MucC n=15 Tax=Shewanella RepID=Q12KH8_SHEDO Length = 177 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 9/159 (5%) Query: 1 MIKEWATVVSWQN-GQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 +++E +V++ G V ++K++C+ C++ CG+ + K T +PC+ Sbjct: 16 LLEEVGRIVAYDAKGWVRVEVELKSACNHCSNSDNCGTSAVAKAFSVKTQQFSLPCETQY 75 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF------ASDVAALCGAILG 113 G V+LG+ LL +A LVY+ PL+GLF+ A + Q+L SD+ A+ + G Sbjct: 76 PIGDLVKLGLPASVLLKAAALVYLLPLIGLFVGALIGQVLGQNLLSVDSDLPAITLGVAG 135 Query: 114 GIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFET 152 +L+ + ++ + A QP+I++ + T Sbjct: 136 AFSAWLLGKRFAHQLEQGA--QPVIMAHLGREIGLNVST 172 >UniRef50_B7UYX7 Positive regulator for alginate biosynthesis MucC n=8 Tax=Pseudomonas RepID=B7UYX7_PSEA8 Length = 151 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 1/144 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLG-PQTTHTIVVPCDEPL 59 MI+E VV+ + G V +++CSSC++ AGCG ++ +LG + D L Sbjct: 1 MIEEQGRVVATEPGAVWVETVRRSTCSSCSANAGCGQGLMQRLGVGAGRARVRALSDLSL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G V LGI E LL +++L Y+ PL+G F+ A L + + + G + +L Sbjct: 61 RVGDAVVLGIHEDLLLRASVLFYLFPLLGFFVAALLATRAGLVEPLIIVSGLAGLLAAWL 120 Query: 120 IARGYSRKFAARAEWQPIILSVAL 143 + R ++R+ A QP++L + Sbjct: 121 LVRRHARRHADDPASQPVVLRALI 144 >UniRef50_B3PJ98 Positive regulator for alginate biosynthesis MucC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJ98_CELJU Length = 158 Score = 137 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVV---PCDE 57 MI E +VS + V ++ C +C + GCG ++ K G ++ V+ Sbjct: 1 MILETGKIVSIEPEGVWVETIQRSVCGTCKAEKGCGQSLMAKWGANPSYLWVLLEGRDPA 60 Query: 58 PLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGG 117 G +++GI E ++ ++LL Y+ PL+ + L A Q+LFASD+A+ GA+ G + G Sbjct: 61 HYRIGDDIQIGIPEDVVVKASLLAYVMPLLLIVLGAVGGQVLFASDLASGLGALGGLVLG 120 Query: 118 FLIARGYSRKFAARAEWQPIILSVALP 144 L R ++ + + QP+++ P Sbjct: 121 GLFLRWHAVRSRYDSRLQPVLVDERKP 147 >UniRef50_C5BRN1 Positive regulator for alginate biosynthesis MucC n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BRN1_TERTT Length = 155 Score = 137 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 1/143 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDE-PL 59 MI E V++ ++ V ++C +C +R GCG R+L T + +P + L Sbjct: 1 MITENGKVLAVEDHNVWVETLKTSTCGACRARHGCGQRMLAASDDYTRVRVALPAEYGNL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 PG +V LGI E S L L Y PLV + + + F + + AI G I G Sbjct: 61 QPGDEVTLGIDESSFLKGVFLAYGLPLVAMLVAVASAAQFFTEEWVLMLAAITGLITGGA 120 Query: 120 IARGYSRKFAARAEWQPIILSVA 142 + R + A ++ ++S A Sbjct: 121 VVRLTASNMALNQCFRARLISRA 143 >UniRef50_B4RVA9 Sigma-E factor regulatory protein RseC n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RVA9_ALTMD Length = 148 Score = 135 bits (341), Expect = 3e-31, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E ATVV+ V +K++C++C +++ CG+ V+++ T + + P+ Sbjct: 1 MIRETATVVAIDGDSVTVEAAIKSTCNACEAQSDCGTGVISRAIAPKTQQLTLRTPMPVR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAA--LCGAILGGIGGF 118 GQKV +GI E +LS++ +Y+ PLV + + L + L + + + Sbjct: 61 IGQKVTVGIPEAGILSASAWLYLLPLVAFIAAYAGAETLLSQSGVVHELWAMVPSAVITY 120 Query: 119 LIARGYSRKFAA--RAEWQPIILSVA 142 + R + K A++QP++LS A Sbjct: 121 AVYRLIAYKLRRIEGAKYQPVLLSTA 146 >UniRef50_Q0A8Z6 Positive regulator of sigma E, RseC/MucC n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8Z6_ALHEH Length = 147 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 5/146 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI++ ATV++ V +++CS CA+++GCG+ L + P + V + Sbjct: 1 MIEQQATVMARDGDHVWVEAHRQSTCSGCAAQSGCGTGALGRWLPGAVTRLRVADPLGVR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-----SDVAALCGAILGGI 115 PG++V + +AEG++L +++VY+ PL+GL A + L A DV AL G + G + Sbjct: 61 PGEQVVIAVAEGAVLRGSVMVYLVPLLGLLGGALAGEQLSAWLSHTGDVLALMGGVSGLL 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSV 141 GF +AR R QP+++ Sbjct: 121 LGFALARRVGADRGHRHRMQPVLVRR 146 >UniRef50_C1DQR8 Positive regulator for alginate biosynthesis MucC n=2 Tax=Azotobacter vinelandii RepID=C1DQR8_AZOVD Length = 156 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 1/144 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKL-GPQTTHTIVVPCDEPL 59 MI+E VV+ + + +A+C C + GCG + L P+ I PL Sbjct: 1 MIEEPGRVVAIEREAVWIEALDEAACPGCTASVGCGRWSFDWLETPRRRRRIRALSVMPL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G V +GI E LL S L +Y+ PL+GLF+ Q L + + LG + + Sbjct: 61 RVGDAVVVGIREDFLLRSTLAIYLLPLLGLFVCTIAIQQLGFGESLMIPAGFLGFVSVWA 120 Query: 120 IARGYSRKFAARAEWQPIILSVAL 143 + R SR+ QP++L Sbjct: 121 MVRRISRRQMNDPTLQPVVLRALP 144 >UniRef50_D0I4M3 Sigma factor RpoE regulatory protein RseC n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I4M3_VIBHO Length = 164 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 4/147 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI A V +G V C K SC SCAS+ CG+ +++ P I VP ++ + Sbjct: 1 MITALAEVTGSGDGYLTVRCQQKTSCGSCASKNTCGTGIVSNALPGKVMDIRVPSEKAIA 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLV----GLFLIASLFQLLFASDVAALCGAILGGIG 116 G VE+G+ E ++L SA++VY+ PLV G FL L L+ A + + ++L G+ Sbjct: 61 AGTLVEIGLEEQTILKSAVVVYILPLVFAVSGAFLGQILADLMAAGEGVIILSSLLAGVL 120 Query: 117 GFLIARGYSRKFAARAEWQPIILSVAL 143 G ++AR +SRK P +L V Sbjct: 121 GVVVARCFSRKLEQEIGTTPKLLRVLG 147 >UniRef50_B7RX57 Positive regulator of sigma(E), RseC/MucC superfamily n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX57_9GAMM Length = 158 Score = 133 bits (334), Expect = 2e-30, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 6/148 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVV----PCD 56 M+ E VV+ + V K +C SCA++ GCG +LN++ I Sbjct: 1 MLLETGRVVAVETDAVWVETIRKTTCGSCAAQKGCGHGLLNRISEGHRSLIRALPGGINP 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS--DVAALCGAILGG 114 + +V + I E +L +++VY+ PL+ + A+L L ++ D+ + GA+ G Sbjct: 61 QDCRVDDEVSISIPEAVILRGSMVVYILPLLLMLASAALGAKLLSTNVDLGSALGAVAGI 120 Query: 115 IGGFLIARGYSRKFAARAEWQPIILSVA 142 GF++ R ++ + QP ++ V Sbjct: 121 TLGFVLVRVHAHRHRDDKNLQPTLVKVL 148 >UniRef50_Q3IDL5 Putative regulator of sigma E (Sigma 24) factor n=2 Tax=Pseudoalteromonas RepID=Q3IDL5_PSEHT Length = 149 Score = 132 bits (331), Expect = 5e-30, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 4/145 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI++ VV+ A + K +C C R CGS+V +KL T D P+V Sbjct: 1 MIEQTLKVVALSGHIAHLEAQQKQACEGCNGR--CGSQVFSKLFGSAKKTFPYKFDTPVV 58 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASL-FQLLFASDVAALCGAILGGIGGFL 119 GQK+ L + + ++ A VYM PL A + +LL ++ + A LGG GFL Sbjct: 59 VGQKITLSLDDSHVVKHAFTVYMLPLFLSLGFALVAAELLLVTEGWQILAAALGGGIGFL 118 Query: 120 IARGYSRKFAARAEWQPIILSVALP 144 +A+ + + F + I ++LP Sbjct: 119 MAKMWVKSFRHDIKVI-KIHPISLP 142 >UniRef50_Q1ZCS1 RNA polymerase sigma-70 factor n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZCS1_9GAMM Length = 149 Score = 132 bits (331), Expect = 5e-30, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 5/149 (3%) Query: 1 MIKEWATVVSWQN----GQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD 56 MI+E ++ + A+V C +++C +C CG V+ K + T+ V Sbjct: 1 MIQESGKIIEIKEVDHKKVAIVECISRSACGTCHQSNVCGVGVVAKTFSEKTNHFSVTYK 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF-ASDVAALCGAILGGI 115 E + V+L I+ L +A VY+ PL+ A + Q LF + A + ++ Sbjct: 61 EGMQIDTMVDLQISNADLFKTASFVYLLPLLFFIGSALIAQYLFLLDESAIILISVTFMG 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALP 144 GF+ R SR+ ++ ++ +I ++ Sbjct: 121 LGFVFMRFISRRLFSKKQYIEVITPISAQ 149 >UniRef50_Q5E311 Sigma-E factor regulatory protein RseC n=38 Tax=Vibrionaceae RepID=Q5E311_VIBF1 Length = 161 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 8/164 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+ ATV+ Q +V C K SC+ C+S+ CG+ +++K P H ++ L Sbjct: 1 MMTALATVLEVQEDIVVVGCQQKTSCNHCSSKDSCGTGIVSKALPGKVHHWAFHTEKKLS 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-----SDVAALCGAILGGI 115 GQ VE+G+ E +LL SA +VY++PL+ L A L + + ++ + ++L + Sbjct: 61 VGQLVEIGLPEKNLLQSAAIVYLTPLLFLLFGALLSEWFLSPMIGLGELTTIVVSVLFAL 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ 159 GG+ +A+ S + E Q +L V P +T+ +A++ Sbjct: 121 GGYQLAKRLSHHIEQKTEQQVSLLRVLGEPV---SDTNLGNAAR 161 >UniRef50_Q1YS34 Positive regulator for alginate biosynthesis MucC n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS34_9GAMM Length = 152 Score = 131 bits (329), Expect = 9e-30, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP-- 58 MI E +V+ + V K++C C + GCG + L+KL +T V+ + Sbjct: 1 MILENGIIVAVEADGLWVETIQKSACEVCVAEKGCGQKFLSKLAGKTVSIRVLRNKKSSA 60 Query: 59 -LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGG 117 GQ V +GI E ++ ++LLVY+ P+ A LF SD+ A+ GA+ G + G Sbjct: 61 EYSVGQSVTIGIPEDIIVMASLLVYLLPIFAAIGGAWLFS---GSDLQAVGGALGGLLLG 117 Query: 118 FLIARGYSRKFAARAEWQPIILSVALPPGLVRFE 151 L+ +S K + P+++ + P ++ F+ Sbjct: 118 GLMVNLHSVKQRDDMRFNPVLIEEPVQPSILNFQ 151 >UniRef50_Q7VM35 Possible sigma-E factor regulatory protein n=1 Tax=Haemophilus ducreyi RepID=Q7VM35_HAEDU Length = 142 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+ E ATVV +QNG+ALV C VK +C +C ++A CG+++L+ L + + + PLV Sbjct: 1 MMVETATVVQYQNGKALVRCSVKTACGNCGAKADCGTQLLSSLVKERVPHFELSVNMPLV 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAIL-GGIGGFL 119 G V++G+ E +LL S +Y+ PL+ L A F LFA+++ + + + F Sbjct: 61 AGDMVKIGLPEQTLLWSIFWIYVVPLMVLIGSAVGFTQLFANELVVVFMMFICTSMTFFS 120 Query: 120 IARGYSRKFAARAEWQPIILSVA 142 I + +K ++ PI L Sbjct: 121 IKKIIDKK--QLSQLNPIFLGRV 141 >UniRef50_Q47WP1 Sigma-E factor regulatory protein RseC n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47WP1_COLP3 Length = 159 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 10/159 (6%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDE--- 57 MIKE A VV+ + GQ V+ +K++CS CA CGS + K PQ T+ +P D Sbjct: 1 MIKELANVVAIEAGQVTVTSQIKSTCSGCAQVDTCGSGQIAKALPQAKLTLTLPYDISVT 60 Query: 58 --PLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-----FASDVAALCGA 110 PL G V L + E +LSSA VY+ PL+GL ++L Q L ++ AL Sbjct: 61 GVPLKEGDCVVLALPEKHILSSAGQVYLLPLLGLITFSALGQWLLKQQILPHELFALGLG 120 Query: 111 ILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVR 149 ++GG G+ A+ ++ QP I+ V P +V+ Sbjct: 121 LIGGYLGYRFAKFQQKQGKQSENLQPKIIEVLPSPNIVK 159 >UniRef50_A4BBJ3 Positive regulator for alginate biosynthesis MucC n=1 Tax=Reinekea blandensis MED297 RepID=A4BBJ3_9GAMM Length = 162 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 6/144 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLG----PQTTHTIVVPCD 56 +I+E VV + +V+ ++C SC +R GCG VL + G Q+ + +P D Sbjct: 5 LIQETGQVVRVDGDEVIVAVVRTSACQSCKARQGCGQAVLAEWGSAEHQQSKNHFRIPLD 64 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIG 116 L PG VELG+ E ++ A+LVY+ PLV F++ + + S++ L G +LG Sbjct: 65 RSLKPGDLVELGMPEDTVSRVAMLVYLLPLVVAFVVLLISSAMGLSELWQLVGLVLGFGV 124 Query: 117 GFLIARGYSRKFAARAEWQPIILS 140 G IAR S++ + P IL Sbjct: 125 GVAIARRASQQ--KVSALTPQILR 146 >UniRef50_A1SR27 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SR27_PSYIN Length = 149 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 5/149 (3%) Query: 1 MIKEWATVVSWQNGQ----ALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD 56 M+ E +++ + + A + K++CSSC + CG V++K +P Sbjct: 1 MVAEKGKIIAIEKSEGKTLAHIEYISKSACSSCQNNDTCGVGVVSKTFSDKALQFTIPYA 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLF-QLLFASDVAALCGAILGGI 115 + + + VEL I+ L+ SA+LVY+ PL+ A + Q ++ + AI Sbjct: 61 KEMEVDKFVELNISNNDLIKSAMLVYLVPLLFFITSALIAKQFNITNEAIIILIAISWAA 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALP 144 GF+I ++K + +I S + Sbjct: 121 AGFVITHFVTKKLYPQKSINQLISSKTIQ 149 >UniRef50_A0Y589 Putative regulator of sigma E (Sigma 24) factor n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y589_9GAMM Length = 149 Score = 127 bits (320), Expect = 9e-29, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 4/145 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI++ TVV+ A + + K +C+ C R CGS+V +KL T+ + P+ Sbjct: 1 MIEQTLTVVALSGHTAHLEAEQKQACAGCNGR--CGSQVFSKLFGTAKKTLPYKFESPVE 58 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPL-VGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 GQK+ L + + ++ A VYM PL + L + +LL + + A +GG+ GF Sbjct: 59 IGQKITLSLDDSHMVKHAFAVYMLPLFLSLVFALATSELLLMGEGWQIFAAAVGGVLGFY 118 Query: 120 IARGYSRKFAARAEWQPIILSVALP 144 IA+ + + I +++P Sbjct: 119 IAKTRVKSLRHDIKV-VKIHPISIP 142 >UniRef50_A0Z443 Sigma factor algU negative regulatory protein MucC n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z443_9GAMM Length = 159 Score = 126 bits (316), Expect = 2e-28, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 6/146 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD---- 56 M++E VV+ ++ V + C CA+RAGCG ++++ + Sbjct: 1 MLREIGRVVAVESASVWVETIPSSLCGKCAARAGCGQGIVSRTTGHRGLVEALETSTVRA 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIG 116 + +VE+ + E ++L +LLVY++PL LF I ++ + A + +LG Sbjct: 61 QDCRVDDEVEIELPESAVLKGSLLVYLAPL--LFGITAVLIAQPYGEFATVIAFLLGLGA 118 Query: 117 GFLIARGYSRKFAARAEWQPIILSVA 142 GF+ R ++ R ++P + SV Sbjct: 119 GFVAVRVATQWVLPRQSFEPRLSSVV 144 >UniRef50_C5S2D5 Sigma-E factor regulatory protein n=2 Tax=Actinobacillus minor RepID=C5S2D5_9PAST Length = 149 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQT-THTIVVPCDEPL 59 MI E A V+S+Q+G A V C K +C CA++ CGS+ L+ L + + + +E L Sbjct: 1 MIIENAMVLSYQDGIAQVQCYAKQACGGCAAQKNCGSKALSGLAGEKLAQVLEIKVNEDL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G+ ++LGI E +LL S VY PL+ L L A + +++ G I FL Sbjct: 61 SAGEMIQLGIPEMTLLKSVFWVYCIPLMILILSAVVLSQFIINELWLAFGMIFFTACSFL 120 Query: 120 IARGYSRKFAARAEWQPIIL 139 + + E PI L Sbjct: 121 MVKKIIA-HQQLTELTPIFL 139 >UniRef50_B8F3K6 Sigma-E factor regulatory protein n=7 Tax=Pasteurellaceae RepID=B8F3K6_HAEPS Length = 142 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 2/140 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQT-THTIVVPCDEPL 59 M+ E ATV+ +QNG A V C K+SC SC +++ CGS+ L+ L + + PL Sbjct: 1 MMIEQATVIQYQNGIARVQCQAKSSCGSCVAQSHCGSKALSALAGEKFAPQFDLVVAMPL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G KV++G+AE SLL +Y PL + L + ++ G + F Sbjct: 61 QVGDKVKIGLAERSLLEGVFWLYAVPLFVIVLSTLVLSQWLNHELWVAAGVLCTTAVTFF 120 Query: 120 IARGYSRKFAARAEWQPIIL 139 + + + ++A++ P+ L Sbjct: 121 MIKR-AVAQKSQAQFIPVFL 139 >UniRef50_B9ZJG2 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJG2_9GAMM Length = 151 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 4/149 (2%) Query: 8 VVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVEL 67 ++S + A V + +++C SC++R GCGS VL+++ + + + L G +V + Sbjct: 1 MLSAEAHSARVRIERQSTCGSCSARTGCGSGVLSEVLGRKAVEVTIGHPGQLRAGDRVVI 60 Query: 68 GIAEGSLLSSALLVYMSPLVGLFL--IASLFQLLFASDVAALCGAILGGIGGFLIARGYS 125 GI + +L+S AL +Y+ PL+GL + + + G + G R + Sbjct: 61 GIRDQALVSGALAMYLLPLLGLVAVPGLLMLAWPLLGEGWLMLAGAAGFVLGLGGVRYWM 120 Query: 126 RKFAARAEWQPIILSVALPPGLVRFETSS 154 R A + P+ L G+VR + Sbjct: 121 RHRA--PDLAPVFLRREPDAGVVRAQGRP 147 >UniRef50_C0N4S0 Positive regulator of sigma(E), RseC/MucC superfamily n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N4S0_9GAMM Length = 141 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 70/126 (55%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI++ ATV+S Q V + +++C C +R GCG+ +L K Q I V + L Sbjct: 1 MIEQKATVISRDIHQVWVEAERQSTCGQCQARKGCGTGLLAKHVGQRFSRIAVKTSQDLR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 GQ+V + I E +LLS A+++Y+ PL+ +F+ A+L ++ + ++ + + G + GF Sbjct: 61 VGQQVMVTIPEQALLSGAVMMYLLPLLLMFVTAALARIANSGELVEIIAGLSGLVAGFYF 120 Query: 121 ARGYSR 126 + + Sbjct: 121 VKSRLK 126 >UniRef50_A3JFQ7 Sigma factor algU negative regulatory protein MucC n=1 Tax=Marinobacter sp. ELB17 RepID=A3JFQ7_9ALTE Length = 149 Score = 121 bits (304), Expect = 7e-27, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 3/142 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E VV+ V +++C SC++R+GCG RVL + + V Sbjct: 1 MITESGRVVAVSGSTVWVQTIRQSACQSCSARSGCGQRVLAAASGGRANQVQVLNTLHAG 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLF-QLLFASDVAALCGAILGGIGGFL 119 G V LGIAE +LL ++LLVY PL+ + + QL+ SD A+ A LG GF Sbjct: 61 VGDDVTLGIAEQALLQASLLVYALPLLLMVAASMAASQLVPGSDGVAILAAGLGLGAGFF 120 Query: 120 IARGYSRKFAARAEWQPIILSV 141 +AR + R+ ++QP ++ V Sbjct: 121 VARLWQRRMP--GDYQPHLMKV 140 >UniRef50_C6WX93 Positive regulator of sigma E, RseC/MucC n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WX93_METML Length = 156 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 3/145 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V+ Q G + + + +CS C R GCG+ K+ + T + Sbjct: 1 MIEEHAVVIRCQQGAVELEIERRTACSICGQRRGCGNATWGKMLGHKSQTFLAENGINAQ 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G V +GI E L S L+Y+ PL+ L + L + LF + + + A+ G GF Sbjct: 61 VGDSVVVGIDERMALRSVFLLYVLPLLSLIFFSVLAEALFNNQLYVVLAAVFGLCIGFFW 120 Query: 121 ARGY---SRKFAARAEWQPIILSVA 142 + Y + A +Q ++L A Sbjct: 121 VKWYLMGRGRSAGVNSYQAVVLRYA 145 >UniRef50_D0KYN1 Positive regulator of sigma E, RseC/MucC n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYN1_HALNC Length = 183 Score = 117 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 70/144 (48%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 I+E VV+ + ++ C SC+SR GCG ++ K + H + V D P+ Sbjct: 39 IQEEGVVVAVAADGVWIETQRQSGCQSCSSRGGCGVGIMQKALNRRQHRVRVHTDLPVKV 98 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G V+L + +L+ +++L+Y+ PL+GL + A + Q L A+D A+ GA++G L+ Sbjct: 99 GDHVQLLLPAAALVQASVLMYLLPLLGLIVGAMIGQSLLATDAGAIGGAVVGFAAVLLLI 158 Query: 122 RGYSRKFAARAEWQPIILSVALPP 145 + + P I V Sbjct: 159 ARQQNGLSRNGRYAPRIERVLFKS 182 >UniRef50_Q2W409 Positive regulator of sigma E activity n=2 Tax=Magnetospirillum RepID=Q2W409_MAGSA Length = 180 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 2/146 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGC--GSRVLNKLGPQTTHTIVVPCDEP 58 M++ +A VV+ G+A + SC C S C G ++ + Q +P D Sbjct: 23 MVEGFARVVAISGGKAWAEPEQAPSCGGCHSAGLCSIGKQIGDPSARQMAKRFALPGDLG 82 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF 118 L G+KV +GI E +L AL Y PL+ L + L Q L SD A GA+ G + G Sbjct: 83 LTVGEKVVVGIREDTLTKGALTAYGLPLLTLLIGGILGQELGHSDGMAALGAVGGMVIGL 142 Query: 119 LIARGYSRKFAARAEWQPIILSVALP 144 L AR + +AR P L A Sbjct: 143 LGARFIAGILSARGVLTPRYLRRAFE 168 >UniRef50_Q21IH1 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IH1_SACD2 Length = 156 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 14/154 (9%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+ E A VV+ ++ V +++C+ C ++ GCG ++L G + T+V Sbjct: 1 MLSETAKVVAVESDGLWVETHQQSACNQCRAKNGCGQKLLA--GGPSNATLVKAIFNAAS 58 Query: 61 ------PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGG 114 G V +GI E +L++ A + Y+ PL+ + + SD A+ G Sbjct: 59 PSEIWTVGDNVVIGIEERALINGAFMAYVLPLLFMVAAVVAGSFVGLSDPVLALVALAGV 118 Query: 115 IGGFLIARGYSRKF------AARAEWQPIILSVA 142 + G LI + ++ + +Q ++++ A Sbjct: 119 LLGGLIVHLHGKRQLSTINSGGESCYQAVVMAKA 152 >UniRef50_B6BUJ9 Positive regulator of sigma(E), RseC/MucC superfamily n=1 Tax=beta proteobacterium KB13 RepID=B6BUJ9_9PROT Length = 139 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 1/135 (0%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 + + VV + V C C GCG+ + KL + I + +E Sbjct: 1 MSDKGIVVDVFMNKISVESYRDKPCGLCGQTQGCGNSLWGKLLNHKKNKIQINTEEKFTK 60 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDV-AALCGAILGGIGGFLI 120 G VE+ E LL +L++Y PL+ + + +L Q +F +++ ++ ILG G L+ Sbjct: 61 GDIVEMHYDEKKLLRISLIIYFIPLLSVLIFLALAQYIFGNNIPISIFSLILGFFVGLLL 120 Query: 121 ARGYSRKFAARAEWQ 135 +R + + A + Sbjct: 121 SRYFVQSMNAELDIT 135 >UniRef50_Q31HP7 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HP7_THICR Length = 167 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLG-PQTTHTIVVPCDEPLV 60 + V ++G A VS + CS C ++ CG+ VL +L P++T I V Sbjct: 22 LLAQGRVEKVEDGMAYVSTQRETGCSGCQTQKSCGTSVLAQLFSPKSTAPIQVINTLEAK 81 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQ-------LLFASDVAALCGAILG 113 G +V L + E L+ +L+ Y PL+GLF+ A LF+ + + D A+ G ++G Sbjct: 82 EGDEVILSMDESQLIKHSLMGYGLPLLGLFIGAILFKIAIASFFQVPSQDGVAIVGGVIG 141 Query: 114 GIGGFLIARGYSR 126 + G+ I + Y R Sbjct: 142 LLLGWGITKKYYR 154 >UniRef50_Q608M2 Sigma factor regulator MucC n=1 Tax=Methylococcus capsulatus RepID=Q608M2_METCA Length = 146 Score = 115 bits (287), Expect = 6e-25, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 6/145 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V + V K++C SCA GC + ++ +L + + + + Sbjct: 1 MIEEEAIVTQVEEHAIWVEKFRKSACGSCA--GGCSTSLVARLLGGKPLRLRIATEARVA 58 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVA--ALCGAILGGIGGF 118 PG +V +G+ EG+LL+ + +Y+ PL L A L +LL A ++ A G+I GG+ G Sbjct: 59 PGDRVIIGVEEGALLAGSFRMYLFPLFSLIGGALLGKLLAAQGLSATAEAGSIAGGLVGL 118 Query: 119 LIARGYSRKFA--ARAEWQPIILSV 141 + + R P+ + Sbjct: 119 GLTLVLLKYCPSLQRQNLHPVFIRR 143 >UniRef50_C5V4B5 Positive regulator of sigma E, RseC/MucC n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4B5_9PROT Length = 141 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++ A VV + G LV D + CS C + GCGS + +L V Sbjct: 1 MLETRAVVVRKEAGVTLVRADGASGCSVCEGK-GCGSSKVTQLFCNKPREFQVENRINAA 59 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS-DVAALCGAILGGIGGFL 119 G +V + +G++L LVY+ PL +F A+L + D GA+ G + GF Sbjct: 60 VGDEVIVATVDGTVLRGISLVYLLPLALMFAAATLASVWSGGQDGYVAAGALSGVVAGFA 119 Query: 120 IARGYSRKFAARAEWQPII 138 IA+ S + + + + + Sbjct: 120 IAKWISIRPSRQQPYITRL 138 >UniRef50_A4A3V0 Positive regulator of sigma(E), RseC/MucC n=2 Tax=unclassified Gammaproteobacteria RepID=A4A3V0_9GAMM Length = 155 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 13/155 (8%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTI---VVPCDE 57 M+ E A VV+ + V ++SC SCA+RAGCG +LN + + +P D+ Sbjct: 1 MLTESARVVAVEETAVWVETLRQSSCGSCAARAGCGHGMLNSARAGVSKGLLKAALPADK 60 Query: 58 PLVPG--QKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGA----- 110 L VE+ + E L +A L+Y PL+ + L A L +AS + Sbjct: 61 TLEVSLHDTVEISVPEQGFLRAAWLLYAMPLLTMLLAAGLADHFWASSGLSQAAMDLRVT 120 Query: 111 ---ILGGIGGFLIARGYSRKFAARAEWQPIILSVA 142 G G L+ R SR+ +A + QP + V+ Sbjct: 121 VAAASGLGAGLLLLRFLSRRMSADPDLQPRVTGVS 155 >UniRef50_C1D7K9 Positive regulator of sigma E, RseC/MucC n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D7K9_LARHH Length = 151 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 3/153 (1%) Query: 1 MIKEWATVVSWQNG-QALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 MI+ A V+S A V SC+ C GC S +++L V Sbjct: 1 MIETEARVLSLDGESHAWVETRPHGSCALCEGGGGCKSVAISRLFATGQQRYRVANPVGA 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G V + + E LL SAL +Y+ P++ LF A L S+ A++ L Sbjct: 61 AAGDWVIVAVHEQVLLKSALAMYLLPVLALFAGAVLGAYW--SEPASVLLGGTAFAVMLL 118 Query: 120 IARGYSRKFAARAEWQPIILSVALPPGLVRFET 152 I R + + R++++P I+ V P R T Sbjct: 119 ILRRMTANYTHRSDFEPAIIRVGSPRSGCRNRT 151 >UniRef50_B8KRG3 Positive regulator of sigma E, RseC/MucC n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KRG3_9GAMM Length = 145 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 6/137 (4%) Query: 12 QNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD----EPLVPGQKVEL 67 + V ++C CA+RAGCG L + + + +V++ Sbjct: 2 ETDAVWVETVRSSACGRCAARAGCGHGALASISASKGLIRALTGEHVQASACAIDDEVDI 61 Query: 68 GIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRK 127 + E ++L + LVY+ PLV + + + L ++ A G + G GFL+ R Sbjct: 62 ELPEQAVLYGSFLVYLVPLVLAIVGTIIGEQL--GELGAAAGFVAGIAAGFLLIRWLPTL 119 Query: 128 FAARAEWQPIILSVALP 144 A ++P + +V P Sbjct: 120 TRRWAYFEPRVAAVRRP 136 >UniRef50_Q47EG3 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Dechloromonas aromatica RCB RepID=Q47EG3_DECAR Length = 147 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 2/138 (1%) Query: 5 WATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQK 64 A V + + ALV + + C C + GCG + L ++ T V G Sbjct: 12 RAVVRAREGASALVEVE-QGGCGRCHEKGGCGGQHLTQMFCAGPKTYQVDNAIGADIGDH 70 Query: 65 VELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGY 124 V + +A GS+ +A L Y PL+G A + FA D A+ GA G I FL R Sbjct: 71 VTIAVAAGSVRHTANLAYGVPLIGCIGGAVIG-ASFAGDGGAVLGAASGLILSFLYIRFR 129 Query: 125 SRKFAARAEWQPIILSVA 142 S+ A + +P I+S + Sbjct: 130 SQANAGNSTERPHIISRS 147 >UniRef50_C5JB30 Positive regulator of sigma E activity n=1 Tax=uncultured bacterium RepID=C5JB30_9BACT Length = 168 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGS-RVLNKLGPQTTHTIVVPCDEPLV 60 ++ +A VVS + G A + + +SC C S CG+ + L Sbjct: 17 LEGFARVVSLEGGTAWLEPEGMSSCGGCKSSGLCGTKGFFGSSMDGR--RFPLENKVGLT 74 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G++V +G E SL+ +AL+ Y PL+ + + A + Q + SDV A+ GA+LG G L+ Sbjct: 75 VGERVVVGTYEDSLMRAALVAYAVPLLVMLVAAVVGQAMTGSDVVAVGGAVLGLGLGILL 134 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGL 147 AR + + + R + P L A GL Sbjct: 135 ARLRAGRLSRRGDLTPRFLRRAYNEGL 161 >UniRef50_UPI0000E11529 positive regulator of sigma E, RseC/MucC n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E11529 Length = 167 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 12/161 (7%) Query: 1 MIKEWATVVSW-----QNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPC 55 MI E + + VS +K +C SC + + C + V+ K Sbjct: 1 MIIEQGIITDITHNAHKEQVIEVSTAIKTTCGSCQAESNCSTSVVAKFFTPKAEAFKFTV 60 Query: 56 DEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-----FASDVAALCGA 110 DE + GQ+VELGI E L+ + +Y+ P++ + +L L F ++ AL Sbjct: 61 DETVSVGQQVELGITENRLVQVSFYLYLLPIMVFVITTALSIELLADTAFGHELVALLVG 120 Query: 111 ILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFE 151 ++ IG F I G + A + + P ++ + + Sbjct: 121 LMSTIGTFFIISGKLK--ADQQQSTPALIKILPMKSQFPVQ 159 >UniRef50_C6P606 Positive regulator of sigma E, RseC/MucC n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P606_9PROT Length = 145 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI A VV+ NG+ +V ++ C C SR+ CG L K I V CD + Sbjct: 1 MIVTTARVVAADNGRTMVEPSNESGCGGCKSRSVCGVSGLGKYFSGNRKAIEVQCDASVT 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASD 103 G +++L ++EG +L + LL Y+ P V A + D Sbjct: 61 AGDELQLSMSEGDMLKAGLLAYLLPSVMALAGAGIASAYGWGD 103 >UniRef50_C6P3S2 Positive regulator of sigma E, RseC/MucC n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3S2_9PROT Length = 147 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGP-QTTHTIVVPCDEPL 59 M++ A V+ A V C C S GCGS L KL V Sbjct: 1 MLEMRAIVIHVHGDSASVKPLGTGGCGHCDSEGGCGSGTLTKLFCSNKPRLFNVSNAARA 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF----ASDVAALCGAILGGI 115 + G +VE+ I +G+LL A+ +Y+ P+V L + + L D A+ GA+ G Sbjct: 61 MEGDEVEVTIPDGALLRGAMKMYVVPMVLLLVGGAAGSGLATATVGHDAYAVVGALFGLA 120 Query: 116 GGFLIARG 123 GF+ A+ Sbjct: 121 IGFIYAKL 128 >UniRef50_B1KI54 Positive regulator of sigma E, RseC/MucC n=4 Tax=Shewanella RepID=B1KI54_SHEWM Length = 151 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 9/147 (6%) Query: 1 MIKEWATVVSWQN-GQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 M++E A V+ G V VK +C+ C + CG+ ++K +P D Sbjct: 1 MMEEMAKVLESDGKGWVTVEVQVKNACNHCDNSESCGTSAVSKAFSPKVQRFSIPSDRQY 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQL------LFASDVAALCGAILG 113 G+ ++LG+ E LL +A LVY+ PL+GLF ++ L + D + AI G Sbjct: 61 QAGELLKLGLPESVLLKAAALVYLLPLLGLFFGVAVASFITFMFNLTSGDFVVIPFAIAG 120 Query: 114 GIGGFLIARGYSRKFAARAEWQPIILS 140 + + + +++ + QP+I+S Sbjct: 121 ALLFWAKGKKMAKRMED--DTQPVIIS 145 >UniRef50_A1S3X8 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Shewanella amazonensis SB2B RepID=A1S3X8_SHEAM Length = 159 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 8/149 (5%) Query: 1 MIKEWATVVSWQ-NGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 M++E A VV + +G V +VK +C CA+ CG+ + T + E Sbjct: 1 MMEELARVVRVETSGWVTVEVEVKTACGHCAASENCGTGAIASAFAGKTQQFSIKSAETF 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQ-----LLFASDVAALCGAILGG 114 G+ + LG+ E +LL +A LVY+ PLVGL L A + L F S+ A+L ++LG Sbjct: 61 ENGELIRLGLPESALLKAAALVYLLPLVGLLLGALGGKMAGSVLSFGSETASLVFSLLGA 120 Query: 115 IGGFLIARGYSRKFAARAEWQPIILSVAL 143 I +L + ++ + QP+IL+ Sbjct: 121 IVAWLWGKRLAKNLERQT--QPVILARLG 147 >UniRef50_Q47FZ1 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Dechloromonas aromatica RCB RepID=Q47FZ1_DECAR Length = 180 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 9/152 (5%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCAS--------RAGCGSRVLNKLGPQTTHTIVV 53 ++ A VV Q + + SC CAS R G + + Sbjct: 22 VEGIARVVRVTGDQVWLEPEQTTSCGHCASSASCGASAREAAGIGTVTSRLQARRFMLDN 81 Query: 54 P-CDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAIL 112 P G++V +G++E +LLS++L Y PL+ S+ Q ++ D+ + G Sbjct: 82 PEGSSGFHEGERVVVGVSERALLSASLTAYGVPLLFALTAGSVIQAVYGEDLTTMLGMAG 141 Query: 113 GGIGGFLIARGYSRKFAARAEWQPIILSVALP 144 G G L+AR +R+ AAR + P L A P Sbjct: 142 GLFLGLLVARLNARRLAARGDLAPRFLRRARP 173 >UniRef50_Q5R103 Positive regulator of sigma E activity n=2 Tax=Idiomarina RepID=Q5R103_IDILO Length = 147 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 1/127 (0%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +KE A V + + V+ +K +CS CA + CG+ +L+K+ V ++ P Sbjct: 1 MKEVAEVTAVDGNRVTVTTQLKTACSGCAQVSNCGAGILSKVFADRNAQFTVVTEQTFSP 60 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-SDVAALCGAILGGIGGFLI 120 G +V+L + E ++ ALL+Y P++ L L+A L + + + + G F Sbjct: 61 GDQVQLEVPETAVTRFALLLYGLPILTLLLLAVLLENTGTLPEGFVILLSFAGFAFTFWG 120 Query: 121 ARGYSRK 127 + + RK Sbjct: 121 LKRWFRK 127 >UniRef50_A8ZW82 Positive regulator of sigma E, RseC/MucC n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZW82_DESOH Length = 152 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 12/150 (8%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M E V+ A + A+C C S+ C + +G + Sbjct: 1 MATEEGIVIRTSGTSAWIRTQRAAACEHCQSKDSCKT-----MGGGNDMEVEAANRVEAR 55 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF-- 118 G +V + A SL+ + L+YM P++ L A + L + ++ ++L + GF Sbjct: 56 TGDRVVVSFATASLIKATFLIYMFPILCLMAGAGIGVRLSQTVFPSVDQSVLSAVIGFGA 115 Query: 119 -----LIARGYSRKFAARAEWQPIILSVAL 143 + R + A +++P+I+ V Sbjct: 116 FVLAVVFVRIRGNRMAKEDQYKPVIIRVLK 145 >UniRef50_A6TQP8 Positive regulator of sigma E, RseC/MucC n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TQP8_ALKMQ Length = 141 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 17/149 (11%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVP-CDEPLV 60 +K+ TVVS + A V +ASC C + C K+G + V + Sbjct: 1 MKQCGTVVSLEGKMAKVLMQRQASCGDCTA---C------KMGQEEMKLEVKALNNANAQ 51 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPL----VGLFLIASLFQLLFASDVAALCGAILGGI- 115 GQ+VE+ + ++L++A +VYM PL +G+F ++ L + L A G I Sbjct: 52 VGQRVEIDMEHQNVLAAAFIVYMIPLFALMMGIFAGNAMLSALGVENYRDLLTAFAGFIF 111 Query: 116 --GGFLIARGYSRKFAARAEWQPIILSVA 142 F++ + KF ++ PII + Sbjct: 112 MATSFMVIKIRENKFKTNKDFTPIISEIV 140 >UniRef50_UPI0000E87B72 hypothetical protein MB2181_02975 n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87B72 Length = 143 Score = 98.1 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 2/133 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V+ ++ Q V C C GCG+ + K+ + + + + + Sbjct: 1 MIEEQAVVIFKEDDQVSVEIMRTKPCGLCGKTQGCGNSIWGKIFSHKRNKLSIKNNIGVK 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF--ASDVAALCGAILGGIGGF 118 G +V L I E LL S+LL+Y PL+ LF+ + SD+ L GAI G + G Sbjct: 61 VGDRVMLTIEENYLLRSSLLLYGLPLLFLFIGMVFMDTITQKNSDLWVLVGAIFGMLSGL 120 Query: 119 LIARGYSRKFAAR 131 ++ + +RK R Sbjct: 121 ILVKFLARKNHDR 133 >UniRef50_A0L8I7 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8I7_MAGSM Length = 159 Score = 96.2 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 10/152 (6%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++E VV + A+++ K++C +C C + L+ + + Sbjct: 1 MMQEQGKVVELEGAFAIIATQRKSACGNCGGETSCNT--LSGGLGKKPVLFRAYNEAQAK 58 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLF--------LIASLFQLLFASDVAALCGAIL 112 G V L I EG+ LS++ L Y P++ L + L L +++ +L Sbjct: 59 IGDNVVLEIREGAFLSASFLAYGMPMIALIVTGLVVRSIALGLGLELESAEGLGALSGLL 118 Query: 113 GGIGGFLIARGYSRKFAARAEWQPIILSVALP 144 G FL R + + E P++ S+ P Sbjct: 119 ALGGTFLFLRRFYAGQDIKPENMPVVRSILHP 150 >UniRef50_A1AWA8 Positive regulator of sigma E, RseC/MucC n=3 Tax=Gammaproteobacteria RepID=A1AWA8_RUTMC Length = 125 Score = 94.7 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 2/124 (1%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +KE V+ N + + C SC + +GCG+ +L Q + P + Sbjct: 1 MKEQFEVIEIDNEIMTLKVNQTGGCHSCEASSGCGTGILANYFNQYS-VFNKPYQNGVSV 59 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-SDVAALCGAILGGIGGFLI 120 G V L I+ L A ++Y++P++ LFL A++ F + + + +G I Sbjct: 60 GDFVTLEISSSELFLRAFMLYIAPILTLFLGAAIGMAFFPQQEFWHILFSGIGLIVMLFS 119 Query: 121 ARGY 124 R + Sbjct: 120 CRWF 123 >UniRef50_C8WDZ8 Positive regulator of sigma E, RseC/MucC n=5 Tax=Zymomonas mobilis RepID=C8WDZ8_ZYMMN Length = 166 Score = 94.7 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++ A VV+ + D+ + C+ C+ AGC L K P + +P D + Sbjct: 24 LESCAKVVAVDKDIVWLEPDIASGCAGCSHSAGC-LSALTKKTPAESRRFSLPNDHDFIL 82 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-----SDVAALCGAILGGIG 116 G++V + + L+ +AL Y PL+ L + A + + +A+L G +G Sbjct: 83 GEQVIVATSAHLLVKTALFSYGMPLLTLLVFAIFAKYSLGFGDGLAALASLLGLAVGFAC 142 Query: 117 GFLIARGYSRKFAARAEW 134 +L R ++++ ++ Sbjct: 143 VWLGNRYFTKRSGNSLQF 160 >UniRef50_Q3J8D0 Positive regulator of sigma(E), RseC/MucC n=2 Tax=Nitrosococcus oceani RepID=Q3J8D0_NITOC Length = 146 Score = 91.2 bits (225), Expect = 9e-18, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 54/144 (37%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++ A V+ A V + + SC C GCG+ + K + Sbjct: 1 MVEASAQVIVKSETYAWVEAERRTSCHGCTLSQGCGTGSIAKYLMIKPIMVKASNPVGAE 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G +V +G+ E + L + L+YM PL+ + L A L L +L G+GG Sbjct: 61 AGDRVIVGLPEKAFLQGSFLLYMVPLLAMLLGAGLGGTLAPHFGGNEGLEVLLGLGGLAG 120 Query: 121 ARGYSRKFAARAEWQPIILSVALP 144 R + +P IL Sbjct: 121 GLLGVRYMRMGPDLEPKILRTVGR 144 >UniRef50_B8CXR4 Positive regulator of sigma E, RseC/MucC n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXR4_HALOH Length = 143 Score = 90.8 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 63/147 (42%), Gaps = 11/147 (7%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++E V+ + + V +++CS C + CG L + V Sbjct: 1 MEELGKVIKTEGDKLTVKIIRRSACSKCGHK--CG---LAGAHEVDEIEVEVDNTVGAKE 55 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIA----SLFQLLF--ASDVAALCGAILGGI 115 GQ V+L + E L+ +++LVY+ P++ L SL + L S+ A + G+I+ I Sbjct: 56 GQVVKLEMGEQPLVVASMLVYLLPIISLIAGYFITFSLVKALGFKPSEAAGVIGSIIFFI 115 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVA 142 F + + + + ++ P + + Sbjct: 116 LSFYLLKVVDKFLSFNRKYHPRVSEIV 142 >UniRef50_C5CGF6 Positive regulator of sigma E, RseC/MucC n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGF6_KOSOT Length = 147 Score = 89.3 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 4/145 (2%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 + E A V + A+++ + +C+ CA++ C N +T + + P Sbjct: 1 MTEQAIVKKVEQEYAILTKSREEACAMCAAKNMCSVS--NSTTGKTMTIRAMKNGIDVKP 58 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G VE+ + S A L+Y PL+ + L S+ A+ +L G +L+ Sbjct: 59 GDIVEIEVPNFSATKLAFLLYGLPLIAFIITMMGLVSLGISEGFAVIVGLLAVAGVYLLL 118 Query: 122 RGYSRKFAARAEWQPIILSVALPPG 146 Y +K R + P IL Sbjct: 119 SIYDKK--NREKLMPRILRKVGKSN 141 >UniRef50_A8MGM3 Positive regulator of sigma E, RseC/MucC n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MGM3_ALKOO Length = 142 Score = 88.9 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 17/149 (11%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTH-TIVVPCDEPLV 60 +++ ++S +A VS +++C C GC + G + Sbjct: 1 MRQCGVIISIDGERAKVSLQKQSACGDC---KGC------RWGEDNMKMEVEAINRIKAK 51 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF-------ASDVAALCGAILG 113 G +VE+ + ++L++A + Y+ PL+ L L L ++ +V A ++ Sbjct: 52 VGDRVEIDMEHQNVLAAAFIAYVIPLITLILGVILGSMILDKIDIVQNKEVGAGIFGLVL 111 Query: 114 GIGGFLIARGYSRKFAARAEWQPIILSVA 142 + I R F ++ PII ++ Sbjct: 112 TAISYGIIRLKENSFKQNQQFIPIITGIS 140 >UniRef50_C6PD09 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PD09_CLOTS Length = 137 Score = 88.9 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 17/147 (11%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 + E V + ++G+A V C C + C +G + V + L Sbjct: 1 MTEKGCVANIKDGKAKVELLRNDMCGKCHA---C------DMGSNNRMMVEVDAIDELKV 51 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLV----GLFLIASLFQLLFASDVAALCGAILGGI-- 115 G V L I E S+L + +++Y PL+ G+F ++ + + + + AI G + Sbjct: 52 GDNVLLEIRETSMLKATMIMYGIPLLFFFVGVFAGYAVAHIFGIDNFSQMIEAISGLLFT 111 Query: 116 -GGFLIARGYSRKFAARAEWQPIILSV 141 F+ + YS+K E++P+I + Sbjct: 112 AISFIGIKYYSKKVI-NKEYKPVIKKI 137 >UniRef50_C4ZKS2 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thauera sp. MZ1T RepID=C4ZKS2_THASP Length = 155 Score = 88.5 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 4/137 (2%) Query: 2 IKEWATVVSWQNGQALVSCD-VKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 ++ A ++ +NGQA V + C C GCGS ++ + +P D Sbjct: 1 MEARARILRIENGQAWVKLSGKQGGCGRCDEPGGCGSVQISHVFGMPRDEFSIPADARFA 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA---SDVAALCGAILGGIGG 117 G V + I +G+ L +AL+ Y + L + A+ LL D L G + G Sbjct: 61 AGDAVVIRIPDGAPLRAALVSYGLGTLLLLVGAAFGSLLGGVQHGDAWGLAGGVAGLALA 120 Query: 118 FLIARGYSRKFAARAEW 134 +++ R SR R Sbjct: 121 WVVNRMLSRSRNWRNSL 137 >UniRef50_C7RTN3 Positive regulator of sigma E, RseC/MucC n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RTN3_9PROT Length = 138 Score = 87.0 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 2/138 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M W TV + +GQA + D C C GCG L L T T+ V E V Sbjct: 1 MNDAWGTVTAVDDGQATIRMD-DGGCGRCRESGGCGGNNLGHLLCATPRTLRVANPERCV 59 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 GQ+V +G+ +GSL SSAL Y PL+GLF+ A + A ++ A+ G++ G +GG+ Sbjct: 60 VGQRVRVGVVDGSLGSSALHAYAVPLLGLFVGALGGSAV-AGEIGAIGGSLGGLLGGWWG 118 Query: 121 ARGYSRKFAARAEWQPII 138 R + ++P I Sbjct: 119 LRRAHLRSRDDPRFRPSI 136 >UniRef50_A1HP18 Positive regulator of sigma E, RseC/MucC n=2 Tax=Clostridiales RepID=A1HP18_9FIRM Length = 139 Score = 86.6 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 16/145 (11%) Query: 3 KEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPG 62 ++ V+ A V C +C + C + PG Sbjct: 4 EQEGIVIELAGDMARVKTSRHNDCENCGA---C--------PGNAAIVVEASNAIGARPG 52 Query: 63 QKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDV-----AALCGAILGGIGG 117 Q+V L + E ++L +A +VY+ PL+ LF+ A+ L + G L Sbjct: 53 QRVALQVPEVNMLKAAFIVYVLPLLALFMGAATGHYLAGGLGLPALWLQIGGGGLAFGAS 112 Query: 118 FLIARGYSRKFAARAEWQPIILSVA 142 R R+ + A+ QPII + Sbjct: 113 LAYIRYVDRRAKSNAKMQPIITRIL 137 >UniRef50_B9Z3B2 Positive regulator of sigma E, RseC/MucC n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z3B2_9NEIS Length = 155 Score = 85.0 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 2/148 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++ A V++ + ALV +SC C AGC + L+++ T + V Sbjct: 1 MVETQARVLATEQAFALVEPRPHSSCRRCDPVAGCRALSLSRIIGSTDRRVRVHNPLGAE 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G V + + + +A LVY+ P GL + S AS+ +L + G Sbjct: 61 AGDWVLVTVPRQHVSMAAFLVYLVPPAGLGVGLSFGA--GASEPVSLLAGAALFVIGLYA 118 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLV 148 AR R+ QP I ++ L+ Sbjct: 119 ARRELRRRRRSPLLQPTITAIYPSEPLM 146 >UniRef50_Q3A3J1 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A3J1_PELCD Length = 156 Score = 84.7 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 14/151 (9%) Query: 1 MIKEWATVVSWQN-GQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 M++E TVV + A+V C C+ CA+ C + + Sbjct: 1 MMQETGTVVELRGCHVAMVLCRKSTFCAGCAAMGLCHVG-----DDGRSMLVETHNVLGA 55 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-------SDVAALCGAIL 112 V G KV L G L ++ L+Y+ PL+ L A L +++ A ++ A + Sbjct: 56 VVGDKVRLASRAGQFLLASFLLYVVPLLALIGGAVLGEIIGAFYTLRIDPNLLAAIFGLS 115 Query: 113 GGIGGFLIARGYSRKFAARAEWQPIILSVAL 143 +G F I R SR R + P I+ + Sbjct: 116 FLVGSFFIIRIGSRAI-PRGTFMPEIIEILP 145 >UniRef50_B2A247 Positive regulator of sigma E, RseC/MucC n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A247_NATTJ Length = 151 Score = 84.7 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 55/144 (38%), Gaps = 14/144 (9%) Query: 4 EWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQ 63 + V+ ++ V + ++C +C + C + T + + G Sbjct: 10 QVGKVIERKDNYVTVEIERHSACKNCGA---CDFG----MSGNKTSELELENTVNAEVGD 62 Query: 64 KVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-----SDVAALCGAILGGIGGF 118 +V + + ++ ++ L+Y+ PL L L L ++ A ++ L IL + Sbjct: 63 EVVVDMEGKDIVLASFLIYLFPLFSLVLGLFLGNMVAAEINGDENLIGLAFGILFMGFSY 122 Query: 119 LIARGYSRKF--AARAEWQPIILS 140 + Y K + +++P IL Sbjct: 123 TGLKMYDNKVKTSQPQKFKPKILK 146 >UniRef50_B0KB45 Positive regulator of sigma E, RseC/MucC n=10 Tax=Thermoanaerobacter RepID=B0KB45_THEP3 Length = 146 Score = 84.3 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 14/147 (9%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +KE A VVS + QA V ++CS C + C S + T + + Sbjct: 1 MKERAIVVSKRGNQAEVEVIRTSACSKCRA---CSSG-----SNKQTLKVWAENETNAEV 52 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF------ASDVAALCGAILGGI 115 GQ VE+ + +LLS+ ++Y+ PL G L L L ++ + +L I Sbjct: 53 GQIVEIEMESRALLSATFILYVIPLAGFILGVILGLKLADILNIMWKELFSFLIGLLFII 112 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVA 142 F +R F + I++V Sbjct: 113 LVFAGIYANNRFFEKSRMFTARIVNVL 139 >UniRef50_C0GG18 Positive regulator of sigma E, RseC/MucC n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GG18_9FIRM Length = 149 Score = 83.5 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +++ TVV ++ A+V+ +CS C GCG V + + I V Sbjct: 1 MEQVGTVVDVKDDIAIVAVRRHETCSKC---GGCGVAV----SGRGDNYIEAQNVVNAVV 53 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAA----LCGAILGGIGG 117 GQ V++ ++L ++ +VY+ P++ L L L Q++ + I+ +G Sbjct: 54 GQTVKVATDTSNVLKASFVVYIVPMLFLLLGIWLGQVIDGEFGVMARFDIVLGIIFLVGS 113 Query: 118 FLIARGYSRKFAARAEWQPII 138 +L+ RGY +K AA + +I Sbjct: 114 YLVVRGYDKKMAAGEKPASVI 134 >UniRef50_A6TT71 Positive regulator of sigma E, RseC/MucC n=2 Tax=Alkaliphilus RepID=A6TT71_ALKMQ Length = 142 Score = 80.8 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 18/141 (12%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCS-SCAS-RAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 +++ V G A + ++C SCAS + GC T + + Sbjct: 1 MEKIGVVKEVGEGIATIEIQRVSACGESCASCKGGC---------TPTATYVKATNEVGA 51 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-------FASDVAALCGAIL 112 GQ V+L + +L +A LVYM PL+G+ L + ++ + + Sbjct: 52 QVGQYVKLNMENKKVLKAAFLVYMVPLIGMIFGIGLGIWIGELLSYEGMEELIGIGVGFI 111 Query: 113 GGIGGFLIARGYSRKFAARAE 133 I + ++ + E Sbjct: 112 FLILAYFGINRIDKRIRDKNE 132 >UniRef50_Q0F133 Positive regulator for alginate biosynthesis MucC n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F133_9PROT Length = 158 Score = 80.8 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +++ +VV+ + Q LV ++C CA ++ C + + + V Sbjct: 1 MEQQVSVVAIEGDQVLVQGRRASACGKCAGQSSC--STMGSWV-ERVAELRVQNTLHARV 57 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVA 105 G +V L + + LL + +Y P++ + +L + L Sbjct: 58 GDQVLLDVPDSLLLKVSFQLYALPMLAFVFVGALIRALAVHMGW 101 >UniRef50_B8FIP7 Positive regulator of sigma E, RseC/MucC n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIP7_DESAA Length = 159 Score = 80.0 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 10/138 (7%) Query: 17 LVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLS 76 V C C +R GC +G V G +V++ +++ + L Sbjct: 17 RVKSHRNECCDHCEARDGCRV-----MGGGKDMFFEVENSLNAQMGDQVKVRVSDKAFLK 71 Query: 77 SALLVYMSPLVGLFLIA----SLFQLLFASDVAALCGAILGGIG-GFLIARGYSRKFAAR 131 + LVY+ P++ A +L + L A A G +G F + R + + Sbjct: 72 AIFLVYVIPMIAFIGGAFWGNTLGEPLGMDPSATAALAAFGLMGVVFAVVRVIGNRLGQK 131 Query: 132 AEWQPIILSVALPPGLVR 149 A ++P ++ + G V+ Sbjct: 132 AGYKPRMVCITARAGDVQ 149 >UniRef50_A1K5Z5 Putative sigma-E factor regulatory protein RseC n=1 Tax=Azoarcus sp. BH72 RepID=A1K5Z5_AZOSB Length = 146 Score = 79.6 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 38/83 (45%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++ A VV+ + G A V C C GC S L++ + +P D P Sbjct: 1 MRAPAEVVAVRGGSAWVKVTRTGGCGRCDEPGGCRSFSLDQAFGRRDALFRLPNDIDARP 60 Query: 62 GQKVELGIAEGSLLSSALLVYMS 84 G +V++ IAEG+ L +AL Y Sbjct: 61 GDRVDVLIAEGAPLRAALRSYGL 83 >UniRef50_C1SHU9 Positive regulator of sigma E activity n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHU9_9BACT Length = 133 Score = 78.5 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 7/124 (5%) Query: 1 MIKEWATVVSW-QNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 ++K A V+ + G A V ++C++C ++ C L T + L Sbjct: 3 LLKHKAVVLDVDEAGTATVEVARGSACAACGEKSSC------TLTDDTNIKLKFKDSANL 56 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G VE+GI + S S +VY+ PL+ + L A + + + + I I FL Sbjct: 57 KTGDVVEIGIEKNSFYKSLFVVYIVPLILMLLTAVISDSMTKNQLLTAGATISVIIIYFL 116 Query: 120 IARG 123 R Sbjct: 117 YLRL 120 >UniRef50_B7VK82 Sigma-E factor regulatory protein RseC n=17 Tax=Vibrionales RepID=B7VK82_VIBSL Length = 156 Score = 78.1 bits (191), Expect = 9e-14, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%) Query: 1 MIKEWATVVSWQNGQ----ALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD 56 M+ ATV S + +SC+ + SCSSC+S+ CG+ ++ K + + Sbjct: 1 MMTALATVSSVEQKGKQYFVQLSCEQQTSCSSCSSQKSCGTGIVTKAVGNKSLFWQLKTQ 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIAS-----LFQLLFASDVAALCGAI 111 + GQ VE+G E SLL SA +VY+ PL L + A L LL + + A Sbjct: 61 SLVKAGQIVEIGFPEKSLLQSAAIVYLIPLFMLMVGAGFGQLLLQPLLQGGEGIVILTAA 120 Query: 112 LGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGL 147 L GG +A+ ++ +++ + +++ + + Sbjct: 121 LFTAGGIGLAKRLAKPMEDKSKQEVVLIRILGKSLI 156 >UniRef50_B0S1N4 Putative uncharacterized protein n=2 Tax=Finegoldia magna RepID=B0S1N4_FINM2 Length = 142 Score = 77.3 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 19/139 (13%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSS--CASRAGCGSRVLNKLGPQTTHTIVVPCDEP 58 M KE V+ ++ +A V K +C C+ +GC T I Sbjct: 1 MAKE-GMVIKTESTKASVLITRKGACGGEGCSKCSGC---------EHQTQVIECANYIS 50 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS------DVAALCGAIL 112 G +V++ + S+L L+Y+ PL FLIA + ++A+ ++ Sbjct: 51 AKVGDRVQISGDDSSMLKYTALLYLVPL-TFFLIALISSYSILENKIGNFELASFGIGLV 109 Query: 113 GGIGGFLIARGYSRKFAAR 131 G + G++I + +KF + Sbjct: 110 GLLIGYIIVKFIDKKFVDK 128 >UniRef50_D2C475 Positive regulator of sigma E, RseC/MucC n=5 Tax=Thermotogaceae RepID=D2C475_THENR Length = 126 Score = 76.6 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 12/133 (9%) Query: 8 VVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVEL 67 V ++G+ +V+ ++C SC ++ C L + C E L PG +V + Sbjct: 3 VREVKDGKVVVAKARTSACGSCPAKNIC-------LSDNEIKLEIDWCGEDLKPGDEVVV 55 Query: 68 GIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRK 127 I E L + LVY PLV + L D A+ + + R R+ Sbjct: 56 DIPEYDPLKVSTLVYFLPLVIFAVTVITGYLFRLKDWVTFVLALGSVFAYYSLFRF--RR 113 Query: 128 FAARAEWQPIILS 140 + P IL Sbjct: 114 KDRKP---PRILR 123 >UniRef50_B0MTP2 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MTP2_9BACT Length = 136 Score = 76.2 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 4/134 (2%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 I+ V + V +C SC +R CG Q I P P Sbjct: 4 IEHSGVVKRVDAERVCVEITAHGACGSCKAREACGLGQ----TGQKIVEIRTPAAATYRP 59 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G +V + I + + LL Y+ P V L + ++ LL A D AA+ + + + I Sbjct: 60 GDRVTVAITRRTGAVAVLLAYVVPFVVLIGVVAVCYLLGAGDGAAVLAGLGSVVLYYGIL 119 Query: 122 RGYSRKFAARAEWQ 135 RK + Sbjct: 120 WLLRRKIDNAIHFT 133 >UniRef50_C9XNA0 Putative regulator of the sigma(E) factor n=6 Tax=Clostridium RepID=C9XNA0_CLODC Length = 146 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 13/141 (9%) Query: 11 WQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIA 70 + A + ++C A CG + V G VE+ + Sbjct: 11 VDDRTAKLKMQRHSAC------AACGKCATTNSAESKEILVEVDNTIGAKVGDHVEVSMD 64 Query: 71 EGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGG-------FLIARG 123 ++L +A++ Y+ PL+ L + + + + G+ G +L + Sbjct: 65 NMNVLKAAVMAYIIPLIALLVGTIGTYYILGAIGMTTGVEAISGLVGICLTIICYLYLKK 124 Query: 124 YSRKFAARAEWQPIILSVALP 144 +KF E+ P+I + + Sbjct: 125 NDKKFRDSREFIPVITRILID 145 >UniRef50_A5N7M4 Predicted sigma factor n=3 Tax=Clostridium RepID=A5N7M4_CLOK5 Length = 137 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 17/148 (11%) Query: 1 MIKEW-ATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 M KE V+ G A V C +C + C + Sbjct: 1 MKKESEGIVIETTEGFARVKASRHGDCKNCGA---C--------PGDNATVLDAKNPIGA 49 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVA-----ALCGAILGG 114 G+ V L + E +++ +A +VY+ P++ +FL + +F + + G I+ Sbjct: 50 KAGEHVILEMREQNMIRAAFVVYIMPIISIFLGVLVGTWIFNAVGYYEMAFKVVGGIVFF 109 Query: 115 IGGFLIARGYSRKFAARAEWQPIILSVA 142 + + + + + A +P+I V Sbjct: 110 VISLVYIKVFDKATAKNDASKPVIKKVL 137 >UniRef50_B9K8X8 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8X8_THENN Length = 131 Score = 75.0 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 12/142 (8%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E V + + +V+ ++C SC +++ C S + E L Sbjct: 1 MI-ERMFVKEVKENKVVVTKARTSACGSCPAKSICVSG------NEINLEAEWNEKEQLK 53 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 PG +V + I E + + +VY PLV + L D A+ G + + Sbjct: 54 PGDEVIVDIPEYDPMKVSAIVYFVPLVIFAAVVITGYSLNWKDWLTFFSALGGVFVYYSL 113 Query: 121 ARGYSRKFAARAEWQPIILSVA 142 R + P I+ A Sbjct: 114 LRFRKKDKKP-----PRIIGKA 130 >UniRef50_A8F5Q6 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thermotoga lettingae TMO RepID=A8F5Q6_THELT Length = 135 Score = 74.3 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 15/145 (10%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP-- 58 M +E V + ++ + + C C + C + I + + Sbjct: 1 MARETMVVTQVKESTVILEKERTSMCGKCPANMFC---------TGESQKIRLEVQKAGF 51 Query: 59 -LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGG 117 L G KV + + +A+LVY P + +F+ + + + +++ L + Sbjct: 52 DLKTGDKVIVETPATGSIKTAMLVYTLPTI-IFVGSLITTISLLNEIEGLLISTAAVAAY 110 Query: 118 FLIARGYSRKFAARAEWQPIILSVA 142 + R Y KF R +++P I+ + Sbjct: 111 YFFLRFYDTKF--RKKFRPRIIEIL 133 >UniRef50_C3KTB5 Sigma-E factor regulator, RseC/MucC family n=9 Tax=Clostridium botulinum RepID=C3KTB5_CLOB6 Length = 145 Score = 73.5 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 17/149 (11%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCS-SCAS-RAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 +KE + S ++G A V K+ C +CA ++ CGS+ + + + Sbjct: 4 MKEVGYIKSVKDGYASVIFKRKSGCGDNCAGCKSNCGSKSIAT---------DIKDTLGV 54 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS------DVAALCGAILG 113 G VE+ +A S + Y PL+ L + L+F + ++ A ++ Sbjct: 55 SVGDMVEIDMATKSFFAMTFWTYTFPLIMLVIGLVSSLLIFKNLGIKQYELLATAVGLVF 114 Query: 114 GIGGFLIARGYSRKFAARAEWQPIILSVA 142 + + +K + + + + Sbjct: 115 LSISYSVLSHMDKKLGKKQSYTLKMTRIL 143 >UniRef50_B0VG53 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG53_9BACT Length = 136 Score = 73.1 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 8/130 (6%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 I++ V + +V + C+SC + C + D PL Sbjct: 6 IEDSGIVKKVEGNSVIVEIERGGGCNSCKMQGFC-------FKKNEPAEFEIVTDIPLQV 58 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 +V+L I+ +LL++ PL+ LFL + L F +++ ++ F I Sbjct: 59 NDRVQLDISPLGRTLVSLLIFGVPLLFLFLGFLIASLWF-TEIVSILIGFTAMALSFRII 117 Query: 122 RGYSRKFAAR 131 R K+ R Sbjct: 118 RFIDTKYGKR 127 >UniRef50_A9BGN6 Positive regulator of sigma E, RseC/MucC n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGN6_PETMO Length = 151 Score = 72.3 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 8/141 (5%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++E V+ + C SCA + GC LG + E + Sbjct: 1 MREVMDVIDKDESYVYLRTTRTQECESCAMKGGC-----TLLGGANELNLKAKNIEKVDV 55 Query: 62 --GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G KV + + E ++ + L Y PL+ I S+ L SD+ + ILG + Sbjct: 56 KKGDKVVVELPEVPVVKLSFLAYGIPLIVFLSIVSILYTLGFSDIFSFLAGILGLGITYF 115 Query: 120 IARGYSRKFAARAEWQPIILS 140 + Y RK + P+IL Sbjct: 116 LIHQYDRKKLKD-RYLPVILQ 135 >UniRef50_C7RQJ9 Positive regulator of sigma E, RseC/MucC n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RQJ9_9PROT Length = 145 Score = 71.9 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 11/135 (8%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++ VV + A V V +SC C +RA CGS ++ + V Sbjct: 6 LEARGRVVDVRGDVAEVRIAVASSCHGCRARAVCGSGA--------ERSVRITAPANAVV 57 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G V L + + + + Y+ P V L L A+L FA D AA GA G G + Sbjct: 58 GDPVVLKLEQTNFTLGMTIGYLLPAVTLLLGAALLS--FAGDAAAALGAASGLTTGLFLV 115 Query: 122 RGYSRKFAARAEWQP 136 R R+ A QP Sbjct: 116 RLLHRRLFAD-RVQP 129 >UniRef50_A1K2X1 Hypothetical sigma-E factor regulatory protein n=1 Tax=Azoarcus sp. BH72 RepID=A1K2X1_AZOSB Length = 135 Score = 71.6 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 12/137 (8%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+ VV+ ++ Q +V + ++C SC + CGS +T +V+ Sbjct: 1 MMSRSGRVVAVKDDQLVVRFEGASACGSCRANKVCGSG--------STTDLVLDGGCGSR 52 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G +V++ + G+ + + Y+ P+ G ++ D+ + G G + Sbjct: 53 VGDQVDVDVDAGTAFRALAVAYLLPVAGFLAGMAVASAGGLGDLGVAGISFAGMGLGLIA 112 Query: 121 ARGYSRKFAARAEWQPI 137 SR+ QP+ Sbjct: 113 ----SRRLGRHPSLQPV 125 >UniRef50_B7IFW0 Positive regulator of sigma(E), RseC/MucC superfamily n=1 Tax=Thermosipho africanus TCF52B RepID=B7IFW0_THEAB Length = 135 Score = 71.6 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 14/140 (10%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +KE T+ + + CSSCA C + + +L + + P Sbjct: 1 MKELFTIAKVDEKYIYLE-RDTSGCSSCAISGSCNVKSVEQLKVEKDNKFEY------FP 53 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G V L + L A L+Y P++ L L SL L SD + +L G F I Sbjct: 54 GDFVILDLKYRPALL-AFLLYGLPVILLVLGVSLGTYLKLSDYFSFLIGLLFMSGAFAIF 112 Query: 122 RGYSRKFAARAEWQPIILSV 141 R + ++ ++P I+ V Sbjct: 113 RIWDKR------YKPKIVDV 126 >UniRef50_C3WAC7 Predicted protein n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAC7_FUSMR Length = 151 Score = 71.6 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 10/126 (7%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 + V + +V +CS C +GC +K G D Sbjct: 1 MLNKGIVKKIDGNKIIVKLYKDTACSHC---SGC--SGDSKYG----KDFEFTTDMKAEI 51 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-SDVAALCGAILGGIGGFLI 120 G V I+ G ++ +A + Y+ P V + + L + L S+ ++ + + + F + Sbjct: 52 GDTVTFEISAGKVIKAASIAYVFPAVAMIVGYFLGEKLLGLSENQSIITSFIALVLSFGV 111 Query: 121 ARGYSR 126 Y + Sbjct: 112 LYFYDK 117 >UniRef50_D1VS59 Positive regulator of sigma E, RseC/MucC n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS59_9FIRM Length = 142 Score = 71.2 bits (173), Expect = 9e-12, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 20/142 (14%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCS----SCASRAGCGSRVLNKLGPQTTHTIVVPCDE 57 +++ V S +G V ++ C SC + C T + V Sbjct: 1 MEKLGIVKSIVDGYMYVEVSRESPCGVSCASCHA--ACAES--------KTEIVKVNNLI 50 Query: 58 PLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS------DVAALCGAI 111 G VE+ I ++L LLVY PL+ LF+ + + DV + + Sbjct: 51 DAKEGDVVEVHINSRNVLGYFLLVYGLPLLFLFIGTCISYYFLSKTNLKNYDVYSFLIGL 110 Query: 112 LGGIGGFLIARGYSRKFAARAE 133 + + + Y +K + + Sbjct: 111 VFMLTAYKFISLYDKKHMSVRD 132 >UniRef50_C8X3U0 Positive regulator of sigma E, RseC/MucC n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3U0_DESRD Length = 151 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 10/144 (6%) Query: 1 MIKEW--ATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP 58 M +E VV+ + A V +C SC C S + T+ + Sbjct: 1 MREEQTQGVVVAVEGNMATVKLPKPQACGSCGGEGSCCSGLTA----SGDVTVRATNEPG 56 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQL---LFASDVAALCGAILGGI 115 G+ V++ + + S + ++Y+ PL + L A L L +++A+ +++ Sbjct: 57 ARLGEVVDVLLVQESSSKAVSILYLFPLAAMVLGAILGSWLHPLGDPEISAVVLSLVCLG 116 Query: 116 GGFLIARGYSRKFAARAEWQPIIL 139 F + S + R E P I+ Sbjct: 117 AAFGLIGWRSSRTRDR-EIPPRII 139 >UniRef50_Q5P0C6 Putative uncharacterized protein rseC n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P0C6_AZOSE Length = 140 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 40/117 (34%), Gaps = 3/117 (2%) Query: 21 DVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALL 80 D C C GC S L +P G V L I + + L ALL Sbjct: 5 DRPGGCGRCDEPGGCRSTGLAYALKAPDKVFRLPNRIGAEAGDAVRLRIDDAAPLRGALL 64 Query: 81 VYMSPLVGLFLIASLFQLLFA---SDVAALCGAILGGIGGFLIARGYSRKFAARAEW 134 Y +V L A+L L A D+ AL G + G + R R R + Sbjct: 65 GYGLGVVLLIAGAALGTGLAAEGQGDLFALTGGLGGLAAAVGLNRFVLRSSRLREAF 121 >UniRef50_A6LJM2 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LJM2_THEM4 Length = 132 Score = 68.9 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 16/141 (11%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++E + + + DV ++C SCA C + ++ L + P Sbjct: 1 MRELFRISKIDDKYLYLERDV-SACGSCALSGKCSVQSVSTLKVEKDKRF------DYFP 53 Query: 62 GQKVELGIAEG-SLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G V L + + L A ++Y P++ L + L L SD+ + + FLI Sbjct: 54 GDFVVLDLKYRPAFL--AFMLYGLPIIMLVVGIGLGVYLKLSDIYSFLIGLGFMSVSFLI 111 Query: 121 ARGYSRKFAARAEWQPIILSV 141 + +K ++PIIL V Sbjct: 112 NKVLDKK------FKPIILDV 126 >UniRef50_Q5P540 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P540_AZOSE Length = 176 Score = 68.5 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 10/154 (6%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVL-----NKLGPQTTHTIVVPC 55 +++ A VV A + + A C SCA+ CGS + P Sbjct: 16 LLEGTARVVRITGAVAWLEPEPSAGCGSCAAARSCGSATFALASGAGTFSRRMAARRFPV 75 Query: 56 DEP-----LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGA 110 D L G +V +G+ E +L ++AL Y PL + + + +SDVA Sbjct: 76 DTGADGPCLEVGDRVVVGVGEDALATAALTAYALPLAIMLAAGATAEFAASSDVATFGAM 135 Query: 111 ILGGIGGFLIARGYSRKFAARAEWQPIILSVALP 144 G + G IAR + + AA P L A Sbjct: 136 AGGLLLGLAIARRLASRLAATGSTVPRFLRHAGR 169 >UniRef50_A5TTG9 Putative uncharacterized protein n=13 Tax=Fusobacterium RepID=A5TTG9_FUSNP Length = 151 Score = 68.1 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 39/82 (47%) Query: 51 IVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGA 110 ++ + G V L I+E ++ +A + Y+ P + + L + L S++ ++ G+ Sbjct: 41 FEFKINQKVELGDLVTLEISERDVVKAAFIAYIFPPIFMILGYIVADHLGFSEMKSIIGS 100 Query: 111 ILGGIGGFLIARGYSRKFAARA 132 LG GF+ Y R FA + Sbjct: 101 FLGLGLGFIFLAIYDRFFAKKT 122 >UniRef50_A0Q1V3 Positive regulator of sigma(E), RseC/MucC superfamily n=3 Tax=Clostridium RepID=A0Q1V3_CLONN Length = 141 Score = 67.7 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 53/149 (35%), Gaps = 15/149 (10%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIV-VPCDEPLV 60 + E + S A V K+ C C + K + Sbjct: 1 MTEVGYITSVNGNYASVVFKRKSGCG-----DNCAT---CKAACSAASITTEIENTAGAK 52 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS------DVAALCGAILGG 114 G KV++ + + + LVY+ PLV + ++ +F+ ++ + I+ Sbjct: 53 VGDKVKVEMEQKTFNKMLALVYVFPLVMMICGIAIGIKVFSQAGYSNYEMLSFLVGIVAL 112 Query: 115 IGGFLIARGYSRKFAARAEWQPIILSVAL 143 + + I +++K A ++ + I+ + Sbjct: 113 VISYTILHFFNKKTAKKSNYSLKIVEILK 141 >UniRef50_A7HN74 Positive regulator of sigma E, RseC/MucC n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HN74_FERNB Length = 150 Score = 67.7 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 5/130 (3%) Query: 2 IKEWATVVSWQNGQALVS-CDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 +KE V + + ++ +A+CS+CA C + K +I P++ Sbjct: 1 MKELMQVRNVDDRYVYLTLMVNEATCSACALSGTCSVKGNEKDIKIQKKSIKSEL-LPIL 59 Query: 61 PGQKVELGIA-EGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 PG V + + ++L +L+VY PL+G L L+ SD+ + I GFL Sbjct: 60 PGDIVVVDLKYNEAVL--SLIVYGIPLLGFITGVLLSYLMKFSDIISFAVGIGFAGAGFL 117 Query: 120 IARGYSRKFA 129 + R + +K+ Sbjct: 118 LTRLFDKKYK 127 >UniRef50_Q47FX5 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Dechloromonas aromatica RCB RepID=Q47FX5_DECAR Length = 155 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 3/123 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+ W V NG+A V + A V T+ +P + L Sbjct: 5 MIEHWGMVRRIDNGRATVVVETTACGICGHGGHC---GVGKSADGGLATTLDLPATDGLK 61 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G V +G+ E L +ALL Y+ P++ + + D A GA G + L+ Sbjct: 62 EGDFVNVGLPESGLSLAALLGYLFPVLATLVGTLAGVMTGGGDSAMALGAAAGFVASLLV 121 Query: 121 ARG 123 AR Sbjct: 122 ARI 124 >UniRef50_Q52718 Nitrogen fixation protein rnfF n=8 Tax=Rhodobacteraceae RepID=RNFF_RHOCA Length = 523 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 57/118 (48%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++E VV+ + +V+ D ++C++CA GCG+R L + TI P + P Sbjct: 16 LRERLRVVAVRGESLVVAADRASACAACAEAKGCGTRALMSMHRTDLMTIARPAGLIVAP 75 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G +VE+ ++ +LL+ A L Y+ P + + +L SD A + + FL Sbjct: 76 GDEVEVAMSGNNLLAGAGLAYLLPALAFVVALALASGAGLSDGGAALVGGVVLMFSFL 133 >UniRef50_C0QGD3 RseC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QGD3_DESAH Length = 152 Score = 66.6 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 12/147 (8%) Query: 5 WATVVSWQ-NGQALVSCDVKASCSSC-ASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPG 62 V + + G A V + K C C ++ C S +LN V G Sbjct: 5 IGIVKATEPGGYAQVMTERKNVCGECYHNKIVCYSCLLN-----PKVIGRVANPVGARVG 59 Query: 63 QKVELGIAEGSLLSSALLVYMSPLVGLFLIAS----LFQLLFASDVAALCG-AILGGIGG 117 V++ I+ L ++A + Y+ P+ L L + + L S+ G + G G Sbjct: 60 DTVKIHISAQKLYTAAGMFYLLPVFTLLLGILLGIYVSETLGVSETTTAIGCSFAGLAVG 119 Query: 118 FLIARGYSRKFAARAEWQPIILSVALP 144 L R +P+I S+ P Sbjct: 120 ILFVTVLGRTTKISKMLEPVISSIVRP 146 >UniRef50_A8SN65 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SN65_9FIRM Length = 141 Score = 66.6 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 15/135 (11%) Query: 2 IKEWATVVSW-QNGQALVSCDVKASC-SSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 +++ + + V + C +C + GC P T IV+ + Sbjct: 1 MEQVGYITKILPEDKCKVLISRISGCKGTCKTCGGC---------PTPTMHIVMKKTLDV 51 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS----DVAALCGAILGGI 115 G V++G+ +L ++ +Y P++ L L + F + D+ I Sbjct: 52 SVGDYVKIGVDSSVVLKYSIFLYGFPILMFILSILLINIAFPNLKGIDLIGFVVGIFTMF 111 Query: 116 GGFLIARGYSRKFAA 130 FLI + K+A Sbjct: 112 LAFLIIKFVDNKYAH 126 >UniRef50_Q893Q4 Putative uncharacterized protein n=1 Tax=Clostridium tetani RepID=Q893Q4_CLOTE Length = 147 Score = 66.2 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 44/150 (29%), Gaps = 11/150 (7%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSS-CAS-RAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 + + V +A + +SC CA+ GC + + Sbjct: 4 MNQVGYVTKVDGEKAHIIFKRTSSCGDKCANCSGGC---------EIPPLVLDIENTLFA 54 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 PG V + + + Y PL+ + L ++ + ++ A + + Sbjct: 55 EPGDAVAVNMEDNIFFKLTFFAYALPLILMLLGVAIAYITTKNETIAAFTGLGFLAISYG 114 Query: 120 IARGYSRKFAARAEWQPIILSVALPPGLVR 149 I R + ++ + + R Sbjct: 115 ILRIVNNNHVKNQSKSVTMMKILSEEEITR 144 >UniRef50_A4WXF8 Ferredoxin n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WXF8_RHOS5 Length = 164 Score = 65.8 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 43/105 (40%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++E V++ + ++ D A CS CA R CG+ L + P + Sbjct: 14 LRERLKVLAVAGDRLELAADRAAGCSCCAMRRTCGAAELAAAARPERIEVARPPGLIVAQ 73 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAA 106 G +VE+ + L+ A L Y+ P + + A L SD+ Sbjct: 74 GDEVEVTLPASRFLTVAGLAYLLPTLAVVGTAGAGMALQLSDLWV 118 >UniRef50_B5YEQ6 Positive regulator of sigma(E), RseC/MucC superfamily n=2 Tax=Dictyoglomus RepID=B5YEQ6_DICT6 Length = 136 Score = 65.4 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 15/141 (10%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +KE V+ + +C SC L K+ + T+ + Sbjct: 1 MKEIGQVIEKNGKILKIKFSSSEACHSCG---------LCKV-DEDNLTLNAIDECNANL 50 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLF-----QLLFASDVAALCGAILGGIG 116 G V + + + L+Y+ PL+ L L + F + +L + Sbjct: 51 GDFVVVEVERKDFFQATFLIYLFPLIAFILGVILGYLTGERYNFDPQLLGFIIGLLFTLM 110 Query: 117 GFLIARGYSRKFAARAEWQPI 137 + + R ++ + + ++ P+ Sbjct: 111 SYPLIRLIYKRLSKKQKFIPV 131 >UniRef50_C2CFQ3 Putative uncharacterized protein n=2 Tax=Anaerococcus RepID=C2CFQ3_9FIRM Length = 138 Score = 65.0 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 13/121 (10%) Query: 6 ATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKV 65 V+ NG V +C +CA+R C + T I V E + G KV Sbjct: 8 GIVLENDNGNLTVQIFRNGACGACAARGTC--------AEKKTTEIQVFSYEDIKKGDKV 59 Query: 66 ELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-----SDVAALCGAILGGIGGFLI 120 + + + VY+ P+V + + A + + S++ L ++ Sbjct: 60 IIEGSSSEVTKLTAFVYIFPVVMMLVGAIIPNVFLKNTGMDSNLLTLIFVLIFLTISVFF 119 Query: 121 A 121 Sbjct: 120 I 120 >UniRef50_A1WTS2 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTS2_HALHL Length = 148 Score = 64.6 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 3/133 (2%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++ A V+ + QA V D +C +C +R CG+++L++ + V Sbjct: 5 LEREAVVIETRGDQARVHADRPTACGACKARGACGAQLLDRHRGARG--VWVRNAIGARE 62 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASD-VAALCGAILGGIGGFLI 120 G+ V + + G+LL AL VY+ PL GL A L + + A +G + G L Sbjct: 63 GEAVVVSVPTGALLGGALAVYLLPLAGLLGGALLADAGLGAGTPGTVASAAVGLVAGLLG 122 Query: 121 ARGYSRKFAARAE 133 AR ++ + Sbjct: 123 ARSLLQRRESATR 135 >UniRef50_C7RHI1 Positive regulator of sigma E, RseC/MucC n=1 Tax=Anaerococcus prevotii DSM 20548 RepID=C7RHI1_ANAPD Length = 138 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 13/131 (9%) Query: 6 ATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKV 65 V+ G V +C +CA++ C + T I + E L G V Sbjct: 8 GIVIDNNKGNLKVQIFRNGACGACAAKGSC--------AEKKTTEIELFSYEDLKRGDHV 59 Query: 66 ELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS-----DVAALCGAILGGIGGFLI 120 + + + VY+ P+V + + A + + + ++ L + + Sbjct: 60 IIEGSSSEVSKLTATVYIVPVVMMLVGALIPNIFLKNTSMDINLLTLISVAIFFAISIIF 119 Query: 121 ARGYSRKFAAR 131 + + R Sbjct: 120 MKKLDKNVKNR 130 >UniRef50_D1PFH5 Positive regulator of sigma(E), RseC/MucC superfamily n=1 Tax=Prevotella copri DSM 18205 RepID=D1PFH5_9BACT Length = 137 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 8/135 (5%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP--L 59 IK V S + G + ++CS+C A C I V E Sbjct: 5 IKHSGIVESVEEGCVCIRIVQSSACSACKVAAHC------TASESKEKMIEVSTSEASLY 58 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G V + ++ Y+ PL+ + + S+ AA A+ I ++ Sbjct: 59 HKGDSVVVTADSAVGFRASFYGYLLPLILMVIALVGVLKATHSEGAAALSALGILIPYYV 118 Query: 120 IARGYSRKFAARAEW 134 + + K + + Sbjct: 119 VLYLFRNKLKNKLSF 133 >UniRef50_C0QLI1 SigE n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLI1_DESAH Length = 110 Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 9/111 (8%) Query: 50 TIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-----SDV 104 + V G +V +G LL + ++Y+ P++ L A+ + L + Sbjct: 4 IVQVNNTINAKKGDRVVIGFKTAPLLKMSFMLYVFPIILLIAGAATGETLAPRFEMDPSM 63 Query: 105 AALCGAILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSE 155 ++ I F+I R + + E++P ++ + R + + Sbjct: 64 TSVLAGIFSFALAFVIIRKTGDRVSKNREFKPFLVRI----DRTRTIETPQ 110 >UniRef50_Q3SH44 Putative positive regulator of sigma E activity n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SH44_THIDA Length = 144 Score = 62.3 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 8/147 (5%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+++ A +V V + S GC SR + +L +V CD L Sbjct: 1 MLEQTAEIVKTAPEGVWVRAV-EPSGCGSCGGQGCSSRRIAELFQCKPRQFLVDCDLSLS 59 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 PG +V +GIA G++L SA+ Y L + A L Q L D AA+ G +LG G L Sbjct: 60 PGDRVIVGIARGTVLRSAIRAYGLALALMLGGALLGQALHPGDAAAVVGLVLGAALGGLF 119 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGL 147 R +P +L P L Sbjct: 120 VR-------NARAPRPAVLRREPSPLL 139 >UniRef50_C0QX76 Putative positive regulator of sigma E, RseC/MucC n=3 Tax=Brachyspira RepID=C0QX76_BRAHW Length = 140 Score = 61.5 bits (148), Expect = 9e-09, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 16/142 (11%) Query: 1 MIKEWATVVS-WQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 M +E+A V+ + N A V ASC C C S + + Sbjct: 1 MKREFALVLETYDNNVAKVELQRSASCDGCT---ICNSG--------KPVVLRAFNNINA 49 Query: 60 VPGQKVELGIAEGSLLSSA-LLVYMSPLVGLFLIASLFQLLF-ASDVAALCGAILGGIGG 117 G V + + E L VY+ PL+ L + + + S++ G I I Sbjct: 50 NKGDSVVIEVEE--LKRGTNFFVYVIPLICLIAGYFIGEYISKLSNIEHNLGPIFAFIVF 107 Query: 118 FLIARGYSRKFAARAEWQPIIL 139 F+ RK + I+ Sbjct: 108 FIYVILGLRKLKKDNKIIANII 129 >UniRef50_C8WYR6 Positive regulator of sigma E, RseC/MucC n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WYR6_DESRD Length = 125 Score = 61.2 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 4/114 (3%) Query: 45 PQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLF---QLLFA 101 G +V++ + ++Y PL+ L A + L + Sbjct: 9 GTQKMAFSAHDAFQAQVGDEVDVAFEATGRKLAMAVLYGVPLLAFLLGAIIGNELALFGS 68 Query: 102 SDVAALCGAILGGIGGFLIARGYSR-KFAARAEWQPIILSVALPPGLVRFETSS 154 +D++ + ++ + F+ R YSR + + AE++P+++ P + + Sbjct: 69 ADLSGVVLSLTATLAAFIGIRWYSRNRLESDAEYRPVVIERYPSPPKTTEDEAP 122 >UniRef50_B3QTB7 Positive regulator of sigma E, RseC/MucC n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTB7_CHLT3 Length = 132 Score = 58.8 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 16/126 (12%) Query: 6 ATVVSWQNGQALVS--CDVKAS-----CSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP 58 V+ + + + CD K + C +C + K + I+ Sbjct: 3 GRVLKVIDDKVELRLFCDAKKASMDGHCGACQAL---------KTENNNSDIIIAQNTIN 53 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF 118 G +VELG+ E + L SA ++ M PL + + L S A++ +L + Sbjct: 54 AKIGDEVELGLKEHAELKSATILLMVPLAIFIVALGVANGLHLSVWASVLIGVLTLGITY 113 Query: 119 LIARGY 124 + Sbjct: 114 ASVKLI 119 >UniRef50_Q8AA49 Positive regulator of sigma(E) n=29 Tax=Bacteroides RepID=Q8AA49_BACTN Length = 141 Score = 58.5 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 10/137 (7%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVP--CDEPL 59 IK V + Q V ++C++C+++ C S I + Sbjct: 6 IKHLGIVENIQGSHLSVRIVQTSACAACSAKGHCSSA------DSKDKIIDITDVTAASY 59 Query: 60 VPGQKVELGIAEGSL-LSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF 118 G++V + I E S+ + + L ++ P V L + + L +++ A ++ I + Sbjct: 60 QVGERVMV-IGETSMGMMAVTLAFIIPFVLLIVSLFAWMALIGNELYAALLSLAVLIPYY 118 Query: 119 LIARGYSRKFAARAEWQ 135 + + + Sbjct: 119 FVLWLNKTRMKQHFSFT 135 >UniRef50_A6L9C9 Putative uncharacterized protein n=6 Tax=Bacteroidales RepID=A6L9C9_PARD8 Length = 138 Score = 58.5 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 7/103 (6%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDE-PLV 60 I V V +++CS C +++ C + I VP Sbjct: 5 INHTGFVEKIDGDTVFVRITQQSACSGCHAQSMC------SASEKKDKIIEVPDRSGRFH 58 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASD 103 + V + L + LL ++ PLV + + L + Sbjct: 59 VNEVVIICGQNSMGLQAVLLAFVIPLVIVVGAIVIGTNLQWDE 101 >UniRef50_A4SEA5 Putative uncharacterized protein n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SEA5_PROVI Length = 143 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%) Query: 6 ATVVS--WQNGQALV-----SCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP 58 ATVVS + LV C C + G G T++ Sbjct: 3 ATVVSTKVKGKAELVILCEDEALKGPHCGFCTAARG-------SKGKAPKETVLARNTCG 55 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF 118 G +V++ +A + L +AL++++ P++ L L + ++ I F Sbjct: 56 AKRGDRVQVSLAGHAELKAALILFIIPMLIFMSALILTSSLQLPLWQSFGVSLASLIITF 115 Query: 119 LIARGYSRKFAARAEWQPIILSVALPPGLVR 149 L+ + + + +I VA P +R Sbjct: 116 LMIKAG---LGEKTYY--VIDQVAPQPKPLR 141 >UniRef50_A5EW01 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EW01_DICNV Length = 154 Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 7 TVVSWQNGQALVSCDVKAS-CSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKV 65 +++ ++ + + C C CG + + G ++ +P G Sbjct: 10 KIIAQNEHYLTINMLGENAQCLHCTQNCACGKQEMWFTGAIFPASLTLPRQPETSWGDYG 69 Query: 66 ELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYS 125 L I+ L A+ Y PL F++ + ++ AIL G L+++ + Sbjct: 70 MLCISRRILSLLAIYTYGLPLFLFFVVLFMGT--PFAEYVTFFAAILSSAGAVLLSKNHR 127 Query: 126 RKFAARA 132 + R Sbjct: 128 QCLLQRH 134 >UniRef50_B4S8E6 Positive regulator of sigma E, RseC/MucC n=2 Tax=Chlorobiaceae RepID=B4S8E6_PROA2 Length = 131 Score = 45.4 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 5/91 (5%) Query: 6 ATVVSWQNGQALVSCDVKASCSSCASRAG-CGSRVLNKLGPQTTHTIVVPCDEPLVPGQK 64 A V+ +A + CS +S + CG+ + + Q T++ G Sbjct: 3 AKVIKTYAEKADIQFI----CSDSSSESVHCGACSMGQTPSQNPETVLAENPVGAKTGDI 58 Query: 65 VELGIAEGSLLSSALLVYMSPLVGLFLIASL 95 VE G+ E + +A L+++ PLV + + Sbjct: 59 VEYGLKEHGEVKAATLLFIVPLVTFMIALGI 89 >UniRef50_C0WDT2 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDT2_9FIRM Length = 141 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 45/142 (31%), Gaps = 27/142 (19%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M + V + +A V + L K + + Sbjct: 1 MERYIGIVTAVSGQRAKVRIER----------------GLKK--GEKPRILDCWNTCEAK 42 Query: 61 PGQKVELGIAEGSL--LSSALLVYMSPLVGLFLIASLFQLL-----FASDVAALCGAILG 113 G VE+ E +L +V PL+ L A + + F V GAI+ Sbjct: 43 KGTYVEV--EEQTLGERQGKWIVRGIPLLTLLAGAIFGRAVSRYLPFDLGVTMFIGAIVW 100 Query: 114 GIGGFLIARGYSRKFAARAEWQ 135 G+ GF AR + R +R Q Sbjct: 101 GLLGFQYARTFKRDVTSRRGKQ 122 >UniRef50_Q3B3R6 Putative uncharacterized protein n=1 Tax=Chlorobium luteolum DSM 273 RepID=Q3B3R6_PELLD Length = 140 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 18/148 (12%) Query: 6 ATVVSWQNGQALV------SCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 V + + G A + C C++ G G TI+ D Sbjct: 3 GRVHAVRKGLAEIMVVCEDEALKGPHCGFCSASGG-------GAGKAKNETILARNDAGA 55 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G VEL I E + L +AL++++ PL L + L A G L Sbjct: 56 TAGTIVELSIGEHAELKAALILFVIPLSTFILALIAAAAVQLP----LLQAAGTGGAVLL 111 Query: 120 IARGYSRKFAARAEWQPIILSVALPPGL 147 + + + ++ V P Sbjct: 112 LTLVVLKAVLRNKTYH-RVVRVVPKPLK 138 >UniRef50_D2RM84 Putative uncharacterized protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM84_ACIFE Length = 145 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 30/136 (22%) Query: 6 ATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKV 65 V++ +A V + + G Q + G +V Sbjct: 9 GKVIAVSKQRAKVKIEQRP-------------------GEQRPKMLDCWNACEAKRGTRV 49 Query: 66 ELG---IAEGSLLSSALLVYMSPLVGLFLIASLFQLL---FASDVA--ALCGAILGGIGG 117 +G + E + ++VY P++ A+ + L F++ V + ++ G Sbjct: 50 IVGKQSLDEK---KAQMIVYGIPVLTAVAGAAFGRALAHFFSAPVWQVVVLSTLVWLALG 106 Query: 118 FLIARGYSRKFAARAE 133 + AR + + + E Sbjct: 107 LVYARNFKKSVRTKVE 122 >UniRef50_B2RLD4 Putative uncharacterized protein n=2 Tax=Porphyromonas gingivalis RepID=B2RLD4_PORG3 Length = 127 Score = 43.4 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 8/126 (6%) Query: 12 QNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP-LVPGQKVELGIA 70 + + V K++C+ C + C S I V P + G +V L Sbjct: 2 EADKITVCVQQKSACAGCHAAGYCSS------TDCKDRYITVMGPAPDIREGDRVLLEGH 55 Query: 71 EGSLLSSALLVYMSP-LVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFA 129 + +L ++ P ++ L ++ +L + + ++ +LI R ++ K + Sbjct: 56 SAMGRLAVVLSFIVPLILLLLMLVLTISILRLDEGMSTLISLGALGVYYLILRLFNGKLS 115 Query: 130 ARAEWQ 135 R + Sbjct: 116 RRLVFT 121 >UniRef50_B3EIX5 Positive regulator of sigma(E) RseC/MucC n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EIX5_CHLL2 Length = 130 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 10/85 (11%) Query: 26 CSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSP 85 C +C + G+R+ + T++ G V + I E L +AL++++ P Sbjct: 29 CGACNA----GNRL------KGRETVLADNAIGAAVGDFVAVAIKEHGELKAALMLFIIP 78 Query: 86 LVGLFLIASLFQLLFASDVAALCGA 110 L+ ++ + + Sbjct: 79 LLSFLSALAVANACTLNLWLSFLCG 103 >UniRef50_D1PYB9 Putative uncharacterized protein n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PYB9_9BACT Length = 136 Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 10/103 (9%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPC--DEPL 59 I + ++G +V + C+SC C T + + Sbjct: 5 ITHPGIIEQIEDGHLIVRIVQGSGCASCKMAGHC------HASESTEKLVDIYNVDTTKY 58 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS 102 G+ + + + + + PL L L A++F + + Sbjct: 59 HVGENIVITADMKTGYRAVAWGFGVPL--LILTATIFGIWAVT 99 >UniRef50_A4AT37 Ferredoxin n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4AT37_9FLAO Length = 151 Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 8/140 (5%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++ + N + V+ +C C ++A CG V + L Sbjct: 16 MVEHDGVISKISNNKITVALKGNINCDGCKAKAVCG-----AADSNGKEIEVDNVSQQLD 70 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 + V + + + + + L Y+ P + L L L F + A A+ + +LI Sbjct: 71 LNEDVTVLLKKNLAIKAVFLAYILPFIFLLLTLLLASNYF-EEWFAGLLALAILLPYYLI 129 Query: 121 ARGYSRKFAARAEWQPIILS 140 Y+ + + + E++ IL Sbjct: 130 I--YALRGSFKKEFKVSILK 147 >UniRef50_Q67R13 Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67R13_SYMTH Length = 132 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 7/83 (8%) Query: 26 CSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSP 85 CS+C+ R CG+ ++V PL PG+ + + S + L Y+ P Sbjct: 8 CSACSHR--CGAH-----SSGGGRYLLVESSTPLKPGRAIVVEAPLPSPARAVALAYLLP 60 Query: 86 LVGLFLIASLFQLLFASDVAALC 108 L G + F + Sbjct: 61 LAGFMAGLFIGNAAFDGAPLPVL 83 >UniRef50_C3JD66 Positive regulator of sigma(E), RseC/MucC family n=2 Tax=Bacteria RepID=C3JD66_9PORP Length = 142 Score = 38.8 bits (89), Expect = 0.055, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 16/34 (47%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGC 35 ++ A V + + +V+ ++CS C + C Sbjct: 6 LEHRAVVSAVYADRVVVTITQSSACSGCHAAKAC 39 >UniRef50_C9P1L6 Putative uncharacterized protein n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P1L6_VIBME Length = 58 Score = 38.8 bits (89), Expect = 0.065, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%) Query: 96 FQLLFASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGL 147 LL AS+ + A+L G +IA+ +S + + Q I+L V P Sbjct: 7 APLLGASEGIVIACALLFMGLGVVIAKYFSTQLENDSSQQVILLRVLGEPIA 58 >UniRef50_C2MBZ9 Putative uncharacterized protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MBZ9_9PORP Length = 106 Score = 38.4 bits (88), Expect = 0.074, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 9/111 (8%) Query: 27 SSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPL 86 C + ++L T +P D L G +V L + + + LL + P Sbjct: 3 GHCHASE-------SRLETITLDRSQLPSDIAL--GDQVSLEMRSSLGMRAVLLTMVVPT 53 Query: 87 VGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPI 137 + + + L L +A + A+ L+ +F + Sbjct: 54 LLIIAVTILLSYLEVGTLAQILIALGVAAAYMLLLWLLRDRFERTFTFTVR 104 >UniRef50_D0LYM0 SNARE associated Golgi protein-like protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYM0_HALO1 Length = 224 Score = 38.4 bits (88), Expect = 0.077, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 8/75 (10%) Query: 77 SALLVYMSP--------LVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKF 128 +A++ Y+ P L G LI S + A + G+++G + F + + R+ Sbjct: 27 AAMIEYLVPPFPGDTITLFGAVLITSQEWSFWGVFGAVMAGSVVGSMAAFYAGKWWRRRS 86 Query: 129 AARAEWQPIILSVAL 143 A + P + + Sbjct: 87 AEKHRPHPKLERLVG 101 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P46187 Sigma-E factor regulatory protein rseC n=137 Tax... 167 1e-40 UniRef50_B5JX05 Positive regulator of sigma E, RseC/MucC n=1 Tax... 158 7e-38 UniRef50_B8GPK5 Positive regulator of sigma E, RseC/MucC n=1 Tax... 157 1e-37 UniRef50_C7RA51 Positive regulator of sigma E, RseC/MucC n=1 Tax... 157 1e-37 UniRef50_B4F050 Sigma-E factor regulatory protein n=12 Tax=Enter... 155 3e-37 UniRef50_Q2BJ04 Positive regulator for alginate biosynthesis Muc... 154 7e-37 UniRef50_A6VUA3 Positive regulator of sigma E, RseC/MucC n=2 Tax... 151 6e-36 UniRef50_Q57126 Putative uncharacterized protein Y1293 n=4 Tax=P... 151 6e-36 UniRef50_D0ZCZ8 SoxR reducing system protein n=2 Tax=Edwardsiell... 147 1e-34 UniRef50_C5SBU1 Positive regulator of sigma E, RseC/MucC n=1 Tax... 146 2e-34 UniRef50_Q1N1C0 Sigma factor algU negative regulatory protein Mu... 145 4e-34 UniRef50_A6FDN4 Putative uncharacterized protein n=1 Tax=Moritel... 143 2e-33 UniRef50_Q0I574 Possible positive sigma-E factor regulatory prot... 142 3e-33 UniRef50_Q0VP14 AlgM protein n=2 Tax=Alcanivorax RepID=Q0VP14_ALCBS 142 3e-33 UniRef50_A6VKY4 Positive regulator of sigma E, RseC/MucC n=3 Tax... 141 5e-33 UniRef50_A1U2W9 Positive regulator of sigma E, RseC/MucC n=2 Tax... 141 6e-33 UniRef50_P44060 Uncharacterized protein HI0850 n=21 Tax=Haemophi... 140 1e-32 UniRef50_C6CNL7 Positive regulator of sigma E, RseC/MucC n=8 Tax... 136 2e-31 UniRef50_Q12KH8 Positive regulator of sigma(E), RseC/MucC n=15 T... 135 5e-31 UniRef50_Q07YZ3 Positive regulator of sigma(E), RseC/MucC n=3 Ta... 135 6e-31 UniRef50_C5BRN1 Positive regulator for alginate biosynthesis Muc... 134 8e-31 UniRef50_A0KGE9 Sigma-E factor regulatory protein RseC n=2 Tax=A... 134 1e-30 UniRef50_C4LBZ5 Positive regulator of sigma E, RseC/MucC n=1 Tax... 134 1e-30 UniRef50_UPI0001AEB8D2 sigma-E factor regulatory protein RseC n=... 132 3e-30 UniRef50_Q1ZCS1 RNA polymerase sigma-70 factor n=1 Tax=Psychromo... 131 6e-30 UniRef50_Q2SL37 Sigma factor algU negative regulatory protein Mu... 130 1e-29 UniRef50_C1D7K9 Positive regulator of sigma E, RseC/MucC n=1 Tax... 130 2e-29 UniRef50_Q15R30 Positive regulator of sigma E, RseC/MucC n=1 Tax... 129 3e-29 UniRef50_A0YCK5 Positive regulator for alginate biosynthesis Muc... 128 5e-29 UniRef50_B7UYX7 Positive regulator for alginate biosynthesis Muc... 128 7e-29 UniRef50_Q5E311 Sigma-E factor regulatory protein RseC n=38 Tax=... 127 1e-28 UniRef50_B3PJ98 Positive regulator for alginate biosynthesis Muc... 125 5e-28 UniRef50_A4BBJ3 Positive regulator for alginate biosynthesis Muc... 125 6e-28 UniRef50_B4RVA9 Sigma-E factor regulatory protein RseC n=1 Tax=A... 124 1e-27 UniRef50_D0I4M3 Sigma factor RpoE regulatory protein RseC n=1 Ta... 123 1e-27 UniRef50_Q0A8Z6 Positive regulator of sigma E, RseC/MucC n=1 Tax... 123 2e-27 UniRef50_C1DQR8 Positive regulator for alginate biosynthesis Muc... 123 2e-27 UniRef50_Q47WP1 Sigma-E factor regulatory protein RseC n=1 Tax=C... 121 6e-27 UniRef50_B9ZJG2 Positive regulator of sigma E, RseC/MucC n=1 Tax... 121 6e-27 UniRef50_A0Z443 Sigma factor algU negative regulatory protein Mu... 121 8e-27 UniRef50_A1SR27 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 120 2e-26 UniRef50_Q7VM35 Possible sigma-E factor regulatory protein n=1 T... 120 2e-26 UniRef50_B7RX57 Positive regulator of sigma(E), RseC/MucC superf... 120 2e-26 UniRef50_B8F3K6 Sigma-E factor regulatory protein n=7 Tax=Pasteu... 119 4e-26 UniRef50_C5S2D5 Sigma-E factor regulatory protein n=2 Tax=Actino... 118 5e-26 UniRef50_Q3IDL5 Putative regulator of sigma E (Sigma 24) factor ... 118 8e-26 UniRef50_B2A247 Positive regulator of sigma E, RseC/MucC n=1 Tax... 117 1e-25 UniRef50_Q31HP7 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 117 1e-25 UniRef50_A8ZW82 Positive regulator of sigma E, RseC/MucC n=1 Tax... 117 1e-25 UniRef50_Q21IH1 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 116 2e-25 UniRef50_C5CGF6 Positive regulator of sigma E, RseC/MucC n=1 Tax... 116 2e-25 UniRef50_B8CXR4 Positive regulator of sigma E, RseC/MucC n=1 Tax... 116 3e-25 UniRef50_Q47EG3 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 115 4e-25 UniRef50_C6P3S2 Positive regulator of sigma E, RseC/MucC n=1 Tax... 115 4e-25 UniRef50_Q1YS34 Positive regulator for alginate biosynthesis Muc... 115 5e-25 UniRef50_A0Y589 Putative regulator of sigma E (Sigma 24) factor ... 115 5e-25 UniRef50_B0KB45 Positive regulator of sigma E, RseC/MucC n=10 Ta... 113 1e-24 UniRef50_C5V4B5 Positive regulator of sigma E, RseC/MucC n=1 Tax... 113 1e-24 UniRef50_B6BUJ9 Positive regulator of sigma(E), RseC/MucC superf... 113 1e-24 UniRef50_Q2W409 Positive regulator of sigma E activity n=2 Tax=M... 113 2e-24 UniRef50_Q608M2 Sigma factor regulator MucC n=1 Tax=Methylococcu... 113 2e-24 UniRef50_A8MGM3 Positive regulator of sigma E, RseC/MucC n=1 Tax... 113 2e-24 UniRef50_C6WX93 Positive regulator of sigma E, RseC/MucC n=1 Tax... 113 3e-24 UniRef50_C5JB30 Positive regulator of sigma E activity n=1 Tax=u... 113 3e-24 UniRef50_A0L8I7 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 112 3e-24 UniRef50_A1AWA8 Positive regulator of sigma E, RseC/MucC n=3 Tax... 112 3e-24 UniRef50_C0N4S0 Positive regulator of sigma(E), RseC/MucC superf... 111 6e-24 UniRef50_A6TQP8 Positive regulator of sigma E, RseC/MucC n=1 Tax... 111 1e-23 UniRef50_B8KRG3 Positive regulator of sigma E, RseC/MucC n=1 Tax... 110 1e-23 UniRef50_UPI0000E11529 positive regulator of sigma E, RseC/MucC ... 110 2e-23 UniRef50_D0KYN1 Positive regulator of sigma E, RseC/MucC n=1 Tax... 110 2e-23 UniRef50_B9K8X8 Positive regulator of sigma E, RseC/MucC n=1 Tax... 110 2e-23 UniRef50_A3JFQ7 Sigma factor algU negative regulatory protein Mu... 109 3e-23 UniRef50_Q47FZ1 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 109 4e-23 UniRef50_B9Z3B2 Positive regulator of sigma E, RseC/MucC n=1 Tax... 108 8e-23 UniRef50_C6PD09 Positive regulator of sigma E, RseC/MucC n=1 Tax... 108 9e-23 UniRef50_B7IFW0 Positive regulator of sigma(E), RseC/MucC superf... 107 1e-22 UniRef50_A1HP18 Positive regulator of sigma E, RseC/MucC n=2 Tax... 107 1e-22 UniRef50_Q893Q4 Putative uncharacterized protein n=1 Tax=Clostri... 106 2e-22 UniRef50_A4A3V0 Positive regulator of sigma(E), RseC/MucC n=2 Ta... 106 2e-22 UniRef50_C9XNA0 Putative regulator of the sigma(E) factor n=6 Ta... 106 2e-22 UniRef50_A6LJM2 Positive regulator of sigma E, RseC/MucC n=1 Tax... 105 4e-22 UniRef50_D2C475 Positive regulator of sigma E, RseC/MucC n=5 Tax... 104 7e-22 UniRef50_Q3A3J1 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 104 1e-21 UniRef50_A9BGN6 Positive regulator of sigma E, RseC/MucC n=1 Tax... 103 1e-21 UniRef50_A0Q1V3 Positive regulator of sigma(E), RseC/MucC superf... 103 2e-21 UniRef50_UPI0000E87B72 hypothetical protein MB2181_02975 n=1 Tax... 103 2e-21 UniRef50_C3KTB5 Sigma-E factor regulator, RseC/MucC family n=9 T... 103 3e-21 UniRef50_C6P606 Positive regulator of sigma E, RseC/MucC n=1 Tax... 102 4e-21 UniRef50_Q3J8D0 Positive regulator of sigma(E), RseC/MucC n=2 Ta... 102 4e-21 UniRef50_A6TT71 Positive regulator of sigma E, RseC/MucC n=2 Tax... 102 5e-21 UniRef50_B8FIP7 Positive regulator of sigma E, RseC/MucC n=1 Tax... 102 5e-21 UniRef50_A1S3X8 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 101 5e-21 UniRef50_Q5R103 Positive regulator of sigma E activity n=2 Tax=I... 101 5e-21 UniRef50_B5YEQ6 Positive regulator of sigma(E), RseC/MucC superf... 101 6e-21 UniRef50_C0GG18 Positive regulator of sigma E, RseC/MucC n=1 Tax... 101 8e-21 UniRef50_C8WDZ8 Positive regulator of sigma E, RseC/MucC n=5 Tax... 101 8e-21 UniRef50_A5N7M4 Predicted sigma factor n=3 Tax=Clostridium RepID... 101 1e-20 UniRef50_B0MTP2 Putative uncharacterized protein n=1 Tax=Alistip... 100 1e-20 UniRef50_D1VS59 Positive regulator of sigma E, RseC/MucC n=1 Tax... 99 2e-20 UniRef50_B1KI54 Positive regulator of sigma E, RseC/MucC n=4 Tax... 100 3e-20 UniRef50_A8F5Q6 Positive regulator of sigma E, RseC/MucC n=1 Tax... 99 4e-20 UniRef50_C8X3U0 Positive regulator of sigma E, RseC/MucC n=1 Tax... 98 1e-19 UniRef50_B0S1N4 Putative uncharacterized protein n=2 Tax=Finegol... 98 1e-19 UniRef50_C4ZKS2 Positive regulator of sigma E, RseC/MucC n=1 Tax... 98 1e-19 UniRef50_C1SHU9 Positive regulator of sigma E activity n=1 Tax=D... 97 2e-19 UniRef50_C3WAC7 Predicted protein n=1 Tax=Fusobacterium mortifer... 97 2e-19 UniRef50_A7HN74 Positive regulator of sigma E, RseC/MucC n=1 Tax... 94 1e-18 UniRef50_A1K5Z5 Putative sigma-E factor regulatory protein RseC ... 93 2e-18 UniRef50_B0VG53 Putative uncharacterized protein n=1 Tax=Candida... 93 3e-18 UniRef50_Q5P0C6 Putative uncharacterized protein rseC n=1 Tax=Ar... 91 1e-17 UniRef50_C7RHI1 Positive regulator of sigma E, RseC/MucC n=1 Tax... 91 1e-17 UniRef50_Q8AA49 Positive regulator of sigma(E) n=29 Tax=Bacteroi... 90 3e-17 UniRef50_D1PFH5 Positive regulator of sigma(E), RseC/MucC superf... 89 5e-17 UniRef50_Q0F133 Positive regulator for alginate biosynthesis Muc... 88 8e-17 UniRef50_C0QX76 Putative positive regulator of sigma E, RseC/Muc... 88 1e-16 UniRef50_C8WYR6 Positive regulator of sigma E, RseC/MucC n=1 Tax... 87 1e-16 UniRef50_C0QLI1 SigE n=1 Tax=Desulfobacterium autotrophicum HRM2... 87 2e-16 UniRef50_B7VK82 Sigma-E factor regulatory protein RseC n=17 Tax=... 87 2e-16 UniRef50_B3QTB7 Positive regulator of sigma E, RseC/MucC n=1 Tax... 86 4e-16 UniRef50_A8SN65 Putative uncharacterized protein n=1 Tax=Parvimo... 86 4e-16 UniRef50_Q47FX5 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 85 5e-16 UniRef50_C2CFQ3 Putative uncharacterized protein n=2 Tax=Anaeroc... 85 1e-15 UniRef50_C7RTN3 Positive regulator of sigma E, RseC/MucC n=1 Tax... 85 1e-15 UniRef50_A6L9C9 Putative uncharacterized protein n=6 Tax=Bactero... 84 1e-15 UniRef50_A5TTG9 Putative uncharacterized protein n=13 Tax=Fusoba... 84 2e-15 UniRef50_C0QGD3 RseC n=1 Tax=Desulfobacterium autotrophicum HRM2... 83 2e-15 UniRef50_C7RQJ9 Positive regulator of sigma E, RseC/MucC n=1 Tax... 83 3e-15 UniRef50_A5EW01 Putative uncharacterized protein n=1 Tax=Dichelo... 81 1e-14 UniRef50_A1K2X1 Hypothetical sigma-E factor regulatory protein n... 81 1e-14 UniRef50_A4WXF8 Ferredoxin n=1 Tax=Rhodobacter sphaeroides ATCC ... 79 5e-14 UniRef50_Q52718 Nitrogen fixation protein rnfF n=8 Tax=Rhodobact... 78 8e-14 UniRef50_A4SEA5 Putative uncharacterized protein n=1 Tax=Chlorob... 76 3e-13 UniRef50_C0WDT2 Putative uncharacterized protein n=1 Tax=Acidami... 76 3e-13 UniRef50_D2RM84 Putative uncharacterized protein n=1 Tax=Acidami... 72 6e-12 UniRef50_A1WTS2 Positive regulator of sigma(E), RseC/MucC n=1 Ta... 72 7e-12 UniRef50_B4S8E6 Positive regulator of sigma E, RseC/MucC n=2 Tax... 71 2e-11 UniRef50_Q5P540 Putative uncharacterized protein n=1 Tax=Aromato... 68 1e-10 UniRef50_Q3SH44 Putative positive regulator of sigma E activity ... 67 2e-10 UniRef50_Q3B3R6 Putative uncharacterized protein n=1 Tax=Chlorob... 62 5e-09 Sequences not found previously or not previously below threshold: UniRef50_D1PYB9 Putative uncharacterized protein n=1 Tax=Prevote... 67 2e-10 UniRef50_B6W855 Putative uncharacterized protein n=2 Tax=Anaeroc... 62 6e-09 UniRef50_A4AT37 Ferredoxin n=1 Tax=Flavobacteriales bacterium HT... 60 2e-08 UniRef50_B3EIX5 Positive regulator of sigma(E) RseC/MucC n=1 Tax... 60 3e-08 UniRef50_B2RLD4 Putative uncharacterized protein n=2 Tax=Porphyr... 58 7e-08 UniRef50_C3JD66 Positive regulator of sigma(E), RseC/MucC family... 53 3e-06 UniRef50_Q1K1M4 Putative uncharacterized protein n=1 Tax=Desulfu... 47 2e-04 UniRef50_C2MBZ9 Putative uncharacterized protein n=1 Tax=Porphyr... 47 2e-04 UniRef50_Q67R13 Putative uncharacterized protein n=1 Tax=Symbiob... 46 5e-04 UniRef50_C6Q1N1 Putative uncharacterized protein n=1 Tax=Clostri... 45 6e-04 UniRef50_Q73MH4 Putative uncharacterized protein n=1 Tax=Trepone... 41 0.009 UniRef50_C9P1L6 Putative uncharacterized protein n=1 Tax=Vibrio ... 40 0.023 UniRef50_A5N0Y3 Putative uncharacterized protein n=2 Tax=Clostri... 40 0.023 UniRef50_D0LYM0 SNARE associated Golgi protein-like protein n=1 ... 40 0.024 UniRef50_B3T2S0 Putative amino acid permease n=3 Tax=environment... 40 0.037 >UniRef50_P46187 Sigma-E factor regulatory protein rseC n=137 Tax=Enterobacteriaceae RepID=RSEC_ECOLI Length = 159 Score = 167 bits (422), Expect = 1e-40, Method: Composition-based stats. Identities = 159/159 (100%), Positives = 159/159 (100%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV Sbjct: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI Sbjct: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ 159 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ Sbjct: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ 159 >UniRef50_B5JX05 Positive regulator of sigma E, RseC/MucC n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JX05_9GAMM Length = 156 Score = 158 bits (399), Expect = 7e-38, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 1/143 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E ATV + ++ A V +C SC+++ GCG+ L K+ + + Sbjct: 1 MIEEQATVTAVEDDYAWVQTQRSTACDSCSAQKGCGTSTLGKVIGRQYTQVRALNSSGAQ 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASD-VAALCGAILGGIGGFL 119 G +V +G+AE LL S+L VY+ P+ + + L A + + A + LG GF+ Sbjct: 61 VGDEVMVGLAEDMLLKSSLAVYLVPIALMLMGGVLGDYWSAGNSLYAALASGLGLAFGFV 120 Query: 120 IARGYSRKFAARAEWQPIILSVA 142 + +S K + +QP++L V Sbjct: 121 WIQWFSHKISHNERFQPVVLRVL 143 >UniRef50_B8GPK5 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPK5_THISH Length = 157 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 2/146 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V+S + G A V +++C SCA+ GCG+ V+ K+ + + Sbjct: 1 MIEEQARVISVEQGHAWVETQRRSTCGSCAANKGCGTSVIAKMVGNRRSRVRAIDPVGVR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF--ASDVAALCGAILGGIGGF 118 G +V +GI E +L+ +L VY PL+ L + A L + L+ A + + + G G Sbjct: 61 LGDEVVVGIEEAALVRGSLAVYTVPLITLLVGALLARWLWPAAGEPVVVLSGLAGLAAGL 120 Query: 119 LIARGYSRKFAARAEWQPIILSVALP 144 + R ++ + ++ +QP+IL Sbjct: 121 VWLRLFAGRVSSDPRYQPVILRRLHS 146 >UniRef50_C7RA51 Positive regulator of sigma E, RseC/MucC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA51_KANKD Length = 163 Score = 157 bits (396), Expect = 1e-37, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 2/158 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+ E VV+ + V + CSSC + CGS +++K + Sbjct: 6 MLTELGHVVAKEKDTVWVQTQSRTGCSSCQVNSVCGSGIVSKAFSHKVFITPLKNHINAN 65 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF--ASDVAALCGAILGGIGGF 118 +VE+GI E ++ ++ +VY+ PL+ + + ++Q L S+++++ A+ G GF Sbjct: 66 IDDEVEVGIPEDLVVRASFMVYLVPLISMIIALLVWQFLLTNPSELSSILAAVAGLAIGF 125 Query: 119 LIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSED 156 +I YSR A + + +P++L + P V+ ++ D Sbjct: 126 VITHFYSRSAAEKGQTEPVLLRIVKRPIAVKQIETTLD 163 >UniRef50_B4F050 Sigma-E factor regulatory protein n=12 Tax=Enterobacteriaceae RepID=B4F050_PROMH Length = 154 Score = 155 bits (393), Expect = 3e-37, Method: Composition-based stats. Identities = 72/151 (47%), Positives = 109/151 (72%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+KEWATVV WQ G+AL+ + C SC +RA CGS +LNK+GP+T H + +P ++PLV Sbjct: 1 MVKEWATVVHWQQGRALLRYGSSSGCGSCQARAACGSYLLNKIGPETVHQLELPVEQPLV 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 GQKVE+GI E SLL SA+LVY++PL+GLF++A + L +S++A C ++GG+ GFL+ Sbjct: 61 VGQKVEVGIPENSLLRSAMLVYLTPLLGLFIVAGIASLWLSSELAIFCSGLVGGVLGFLL 120 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFE 151 A+ +R ++ ++PIIL + LPP ++ + Sbjct: 121 AKNIARWWSKDEGFEPIILQIGLPPNELQVQ 151 >UniRef50_Q2BJ04 Positive regulator for alginate biosynthesis MucC n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ04_9GAMM Length = 144 Score = 154 bits (390), Expect = 7e-37, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 2/143 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP-- 58 MI+E VV V +++C+SCA+R GCG ++L G V + Sbjct: 1 MIEEQGKVVEIDATGVWVETVRQSACASCAARNGCGQKLLASAGQGKRFIFRVNNPDDII 60 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF 118 + V LGI EG+ L + L +Y+ PL+ LF+ A + LF +++A + + L F Sbjct: 61 VHENDDVLLGIEEGAFLRATLFMYLIPLLALFVGAVIGNYLFVNEIATIVFSFLALTLSF 120 Query: 119 LIARGYSRKFAARAEWQPIILSV 141 + R S+ +QP+++ V Sbjct: 121 VFVRYGSQPLFRSYRYQPVLMKV 143 >UniRef50_A6VUA3 Positive regulator of sigma E, RseC/MucC n=2 Tax=Marinomonas RepID=A6VUA3_MARMS Length = 155 Score = 151 bits (383), Expect = 6e-36, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 74/141 (52%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E V+S ++G A V +SC+SC +R GCG + ++ + + Sbjct: 1 MIEETGRVLSIEDGFANVETIRTSSCTSCRARHGCGHHAIAQVSSSNRMRMRAIDPLSVE 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 GQ V +GI E +LL +++ +Y+ PL+GL A + L A+ +I+G +GG L+ Sbjct: 61 VGQSVVVGIPEDTLLQASVWMYLIPLLGLVGGAVIPSLWGGESGIAVIFSIIGFVGGLLL 120 Query: 121 ARGYSRKFAARAEWQPIILSV 141 AR S++ ++ P IL + Sbjct: 121 ARNKSKQEMNNLDYYPKILRI 141 >UniRef50_Q57126 Putative uncharacterized protein Y1293 n=4 Tax=Photobacterium RepID=Q57126_PHOPR Length = 165 Score = 151 bits (382), Expect = 6e-36, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 5/151 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++ ATV++ + G VSC + SC CASR CG+ ++ K P H + + D+PL Sbjct: 1 MMRTLATVIAVEQGSVTVSCQQQTSCGHCASRDNCGTGIVTKAIPGRAHQVTLATDKPLT 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF-----ASDVAALCGAILGGI 115 G+ VE+G++E S+LSSALLVY+ PL+ L L A + Q F S++ + +++ Sbjct: 61 IGEIVEIGLSEKSMLSSALLVYIVPLLFLVLGAVVGQWWFVDLAGTSELGVIITSMVSAA 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALPPG 146 G L+AR Y+++ ++++P ++ V P Sbjct: 121 IGLLLARQYAKRLDGNSDYEPSLIRVLGQPL 151 >UniRef50_D0ZCZ8 SoxR reducing system protein n=2 Tax=Edwardsiella RepID=D0ZCZ8_EDWTE Length = 158 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 73/156 (46%), Positives = 104/156 (66%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++EWATV+SW+ G+AL+ C+ A CS C +R GCGS L +LGPQT H + + +PL Sbjct: 1 MMREWATVISWRQGEALLQCEAHAGCSGCRARQGCGSAALAELGPQTRHQLRLAVSQPLQ 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 PGQ+VE+G+ E S+L SALLVY++PLVGL QL SD A+ A+ GG+ GF + Sbjct: 61 PGQRVEIGLQEASVLRSALLVYITPLVGLLGGGGAGQLWLGSDGASALCALAGGVLGFTL 120 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSED 156 AR ++R+ A +QP++L VALP +R T+ + Sbjct: 121 ARRWARRMAQGEAYQPVLLQVALPSSQLRSITNPPN 156 >UniRef50_C5SBU1 Positive regulator of sigma E, RseC/MucC n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBU1_CHRVI Length = 166 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 2/144 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E +++ QA V+ + +++C C+ CG+ +L ++ + ++ Sbjct: 1 MIEERGRIIALVGDQARVTAERRSACGQCSVNNACGTSLLERVFGRHPVELLARNPIGAQ 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA--SDVAALCGAILGGIGGF 118 G +V +G++E LL +A Y+ P++ L L A+L + DVA++ GA++G F Sbjct: 61 VGDEVVVGLSEQGLLRTAAAAYLVPILALILGATLGERFGGAYPDVASVLGALIGLALAF 120 Query: 119 LIARGYSRKFAARAEWQPIILSVA 142 RGYS R E QP+IL Sbjct: 121 WWLRGYSVTLTRRPERQPVILRRL 144 >UniRef50_Q1N1C0 Sigma factor algU negative regulatory protein MucC n=1 Tax=Bermanella marisrubri RepID=Q1N1C0_9GAMM Length = 155 Score = 145 bits (366), Expect = 4e-34, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 1/148 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V+ + V +++C SC ++ GCG +L K+G + + D L Sbjct: 1 MIEETAKVIRVDDNWVWVRAIAQSACGSCQAQKGCGHSLLAKVGQRQIDIQLPRQDYELS 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 V +G+ E ++L S+LL+Y PL+ + ++A L ++ ++ A + A L I GF Sbjct: 61 VNDDVIIGVPEQAVLRSSLLMYGVPLLLMLVVAGLASVMSLAEGAVILLAFLALISGFFY 120 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLV 148 +S A EW P I+ AL + Sbjct: 121 VSRWSN-TARIEEWHPRIIRKALNQETL 147 >UniRef50_A6FDN4 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FDN4_9GAMM Length = 173 Score = 143 bits (360), Expect = 2e-33, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 5/153 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E A V S Q V C+ +++C+ C + CG+ ++ K P TH V +V Sbjct: 15 MIIETAIVKSVIGDQVSVQCESQSACNHCHASDNCGTGMVAKAFPHRTHRFTVTKTADVV 74 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-----FASDVAALCGAILGGI 115 G K+E+G+ E +L++SA+LVY+ PL + L L Q L F + + A +GG Sbjct: 75 AGDKIEIGLREKNLVTSAMLVYLLPLATILLSLGLGQYLSQVFQFEGEGLVILAAFVGGY 134 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALPPGLV 148 GF R S F R +++P +L V ++ Sbjct: 135 IGFSCTRKLSVIFDQRFDFKPKMLGVVAQSEVI 167 >UniRef50_Q0I574 Possible positive sigma-E factor regulatory protein n=5 Tax=Pasteurellaceae RepID=Q0I574_HAES1 Length = 167 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 1/142 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTT-HTIVVPCDEPL 59 M+ E A V+++ G+A V C K +CS C ++ CG+ L++L ++ H +V PL Sbjct: 24 MLTERAIVIAYHQGKATVKCQSKNACSQCTAKNTCGTSALSELTGKSPEHIFIVNSLIPL 83 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 GQ VELG+ E SL+S+ALL+Y+ PL+ L + +F+ ++ + F+ Sbjct: 84 KIGQIVELGLQESSLISTALLLYIIPLMTLLSATLIANQIFSQELWGAIFILFCTALSFV 143 Query: 120 IARGYSRKFAARAEWQPIILSV 141 + YS+K+ + +QPI+L + Sbjct: 144 LIHSYSKKWQHKKAFQPILLRI 165 >UniRef50_Q0VP14 AlgM protein n=2 Tax=Alcanivorax RepID=Q0VP14_ALCBS Length = 156 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 1/143 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++E VV+ + G V ++C +C ++AGCG ++N+ + VP + Sbjct: 1 MLEEQGIVVAVEPGAIWVETVRASTCGACKAKAGCGHHLINEQQSGQRARLRVPSQDSHQ 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDV-AALCGAILGGIGGFL 119 G V + + EG+L+ AL VY PLV LF A L L V A+ + G GF Sbjct: 61 VGDTVNVALPEGALMRGALWVYGLPLVLLFAGALLGSALPIEMVDASAVLGMAGLFLGFA 120 Query: 120 IARGYSRKFAARAEWQPIILSVA 142 I R SR+ +QP ++ A Sbjct: 121 INRVMSRRAGHTQAYQPRVVPAA 143 >UniRef50_A6VKY4 Positive regulator of sigma E, RseC/MucC n=3 Tax=Pasteurellaceae RepID=A6VKY4_ACTSZ Length = 144 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 1/144 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQT-THTIVVPCDEPL 59 M+ E A VV + +G+A V C K++C +C +R CG+ L L + H V P+ Sbjct: 1 MMTETAVVVYYDDGKATVKCQTKSACGNCTARNACGTAALAGLTGEQGEHLFAVETLTPV 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 GQ VE+G+ E SL++SA +Y PLV L + + + +++ F+ Sbjct: 61 KRGQLVEIGLPERSLMASAFWLYAVPLVTLLIATFVGEAWLPNELIRTIFIFFLTALSFI 120 Query: 120 IARGYSRKFAARAEWQPIILSVAL 143 I + ++RK A ++ +QP++L + Sbjct: 121 IVKIFTRKAARKSAFQPVLLRIIG 144 >UniRef50_A1U2W9 Positive regulator of sigma E, RseC/MucC n=2 Tax=Marinobacter RepID=A1U2W9_MARAV Length = 149 Score = 141 bits (356), Expect = 6e-33, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 3/149 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E VV+ Q V ++C SC++R+GCG R L + + ++V Sbjct: 1 MITETGKVVALVGDQVWVQTIRTSACQSCSARSGCGQRALAAVSGGRANQVLVDNSVGAR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-FASDVAALCGAILGGIGGFL 119 G +V +G+ E SLL+++L++Y PLV + L + + SD+ A+ GA+ G GF Sbjct: 61 VGDEVVIGLDEQSLLNASLIIYGLPLVLMVLASVMAHNWAAGSDLGAIAGAVAGLGVGFW 120 Query: 120 IARGYSRKFAARAEWQPIILSVALPPGLV 148 + + + + A +QP +L + P Sbjct: 121 LVQRW--QAGAGDRYQPRLLRIKTIPSST 147 >UniRef50_P44060 Uncharacterized protein HI0850 n=21 Tax=Haemophilus influenzae RepID=Y850_HAEIN Length = 144 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 81/143 (56%), Gaps = 1/143 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQT-THTIVVPCDEPL 59 M++E A V+S++NG A V C +++C CA++ CG+ L++L + H V PL Sbjct: 1 MLRESAVVISYENGIAKVKCQSQSACGQCAAKNSCGTSSLSELNGKRGEHIFNVETLMPL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 GQ VE+G+ E S+L SALL+Y+ PL+ L ++ L + +++ F+ Sbjct: 61 REGQIVEIGLEEKSMLLSALLMYVVPLLTLLIVTMLSDYISDNEILRAILIFGLTALSFI 120 Query: 120 IARGYSRKFAARAEWQPIILSVA 142 + + YSRK + E+QP++L V Sbjct: 121 LVKSYSRKLGQQTEFQPVLLRVL 143 >UniRef50_C6CNL7 Positive regulator of sigma E, RseC/MucC n=8 Tax=Enterobacteriaceae RepID=C6CNL7_DICZE Length = 156 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 73/155 (47%), Positives = 103/155 (66%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MIKEWATVVSWQ G A++ C+ ++ C SC SR+ CG+ +LN++G TH + VP +PL+ Sbjct: 1 MIKEWATVVSWQAGIAVLHCEQRSGCQSCQSRSSCGTGLLNQIGGAATHQLTVPYAQPLL 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 PGQ+VE+G+AE SLL SA+LVY+ PL+GL L A+L Q S+ A + GA G F + Sbjct: 61 PGQRVEVGLAESSLLRSAMLVYLLPLLGLMLGAALMQYWLNSEPATVAGAFAGVALSFAV 120 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLVRFETSSE 155 + S K +QP+IL V+LP L+R + + E Sbjct: 121 VKRLSAKIGNNQRYQPVILQVSLPENLLRTDMTPE 155 >UniRef50_Q12KH8 Positive regulator of sigma(E), RseC/MucC n=15 Tax=Shewanella RepID=Q12KH8_SHEDO Length = 177 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 9/159 (5%) Query: 1 MIKEWATVVSWQN-GQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 +++E +V++ G V ++K++C+ C++ CG+ + K T +PC+ Sbjct: 16 LLEEVGRIVAYDAKGWVRVEVELKSACNHCSNSDNCGTSAVAKAFSVKTQQFSLPCETQY 75 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF------ASDVAALCGAILG 113 G V+LG+ LL +A LVY+ PL+GLF+ A + Q+L SD+ A+ + G Sbjct: 76 PIGDLVKLGLPASVLLKAAALVYLLPLIGLFVGALIGQVLGQNLLSVDSDLPAITLGVAG 135 Query: 114 GIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFET 152 +L+ + ++ + A QP+I++ + T Sbjct: 136 AFSAWLLGKRFAHQLEQGA--QPVIMAHLGREIGLNVST 172 >UniRef50_Q07YZ3 Positive regulator of sigma(E), RseC/MucC n=3 Tax=Shewanella RepID=Q07YZ3_SHEFN Length = 168 Score = 135 bits (339), Expect = 6e-31, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 7/153 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++E A VV +Q G V ++K++C+ CAS CG+ + K T +P ++P Sbjct: 13 MMEEIARVVDYQQGWVTVEVELKSACNHCASSENCGTSTIAKAFSVHTQRFSLPSEKPCH 72 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS-----DVAALCGAILGGI 115 G +++G+ E ++ +A LVY+ PL+GLFL A + +L A + A+ LG + Sbjct: 73 SGDLLKIGLPESVIIKAAALVYLLPLIGLFLSAMIGHMLAAGIGLSTNGFAMAFGALGAL 132 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALPPGLV 148 + I + ++ + A A P+I++ + Sbjct: 133 VAWFIGKHFATELEAHA--TPVIIAYLGQEVGI 163 >UniRef50_C5BRN1 Positive regulator for alginate biosynthesis MucC n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BRN1_TERTT Length = 155 Score = 134 bits (338), Expect = 8e-31, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 1/143 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP-L 59 MI E V++ ++ V ++C +C +R GCG R+L T + +P + L Sbjct: 1 MITENGKVLAVEDHNVWVETLKTSTCGACRARHGCGQRMLAASDDYTRVRVALPAEYGNL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 PG +V LGI E S L L Y PLV + + + F + + AI G I G Sbjct: 61 QPGDEVTLGIDESSFLKGVFLAYGLPLVAMLVAVASAAQFFTEEWVLMLAAITGLITGGA 120 Query: 120 IARGYSRKFAARAEWQPIILSVA 142 + R + A ++ ++S A Sbjct: 121 VVRLTASNMALNQCFRARLISRA 143 >UniRef50_A0KGE9 Sigma-E factor regulatory protein RseC n=2 Tax=Aeromonas RepID=A0KGE9_AERHH Length = 153 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 6/149 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M +E ATVV+ A V C+ +++CS C ++ CG+ + K P + V + Sbjct: 1 MSEELATVVAIDGQHAWVECERRSACSGCHQQSNCGTGTVAKAFPLQAQRLRVALTIEVS 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLV-----GLFLIASLFQLLFASDVAALCGAILGGI 115 GQ+V LGI + S+L A LVY+ PL L L LL A + + +LGG+ Sbjct: 61 VGQQVRLGIPQASILQGAALVYVLPLFCLLAGALLGQLWLAPLLSAGEGVTILSCLLGGL 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALP 144 GF + R +S + + P +L V LP Sbjct: 121 IGFSLVRYFSNRLDQ-GAYGPRMLGVVLP 148 >UniRef50_C4LBZ5 Positive regulator of sigma E, RseC/MucC n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBZ5_TOLAT Length = 153 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 4/147 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCG-SRVLNKLGPQTTHTIVVPCDEPL 59 MI+ ATVV+ + G V ++C C ++ C S ++ H I + C PL Sbjct: 1 MIEAIATVVATRAGYVSVEYQRASACGHCHHQSSCAISSGMDDGQGHGDHIIDIACILPL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL--FASDVAALCGAILGGIGG 117 GQ+V +GI E LL ALLVY+ PL + L A + Q + A+ GA+LGG G Sbjct: 61 EIGQQVRVGIPENGLLKGALLVYILPLFFIMLGAGIGQAFSVAGEEWPAIAGAVLGGYVG 120 Query: 118 FLIARGYSRKFAARAEWQPIILSVALP 144 F++ R S + AE++P+IL V +P Sbjct: 121 FMLMRLRSARLT-NAEYKPVILGVTIP 146 >UniRef50_UPI0001AEB8D2 sigma-E factor regulatory protein RseC n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEB8D2 Length = 153 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 4/144 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E ATVV+ V +K++C++C +++ CG+ V+++ T + + P+ Sbjct: 1 MIRETATVVAVNGDTVTVEAAIKSTCNACQAQSDCGTGVISRALAPKTQQLTLRTPMPVR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAA--LCGAILGGIGGF 118 GQ+V +GI E +LS++ +Y+ PL+ S+ L +S+ L + G+ F Sbjct: 61 VGQEVTVGIPEAGVLSASAWLYLLPLIAFIGAYSVSISLLSSNGFTHELWAMLPSGLVTF 120 Query: 119 LIARGYSRKFAA--RAEWQPIILS 140 + + K R ++QP++L Sbjct: 121 FAYKLIAYKLRRVERTKYQPVLLG 144 >UniRef50_Q1ZCS1 RNA polymerase sigma-70 factor n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZCS1_9GAMM Length = 149 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 5/149 (3%) Query: 1 MIKEWATVVSWQN----GQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD 56 MI+E ++ + A+V C +++C +C CG V+ K + T+ V Sbjct: 1 MIQESGKIIEIKEVDHKKVAIVECISRSACGTCHQSNVCGVGVVAKTFSEKTNHFSVTYK 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF-ASDVAALCGAILGGI 115 E + V+L I+ L +A VY+ PL+ A + Q LF + A + ++ Sbjct: 61 EGMQIDTMVDLQISNADLFKTASFVYLLPLLFFIGSALIAQYLFLLDESAIILISVTFMG 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALP 144 GF+ R SR+ ++ ++ +I ++ Sbjct: 121 LGFVFMRFISRRLFSKKQYIEVITPISAQ 149 >UniRef50_Q2SL37 Sigma factor algU negative regulatory protein MucC n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SL37_HAHCH Length = 144 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 1/143 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E VV+ + + V ++ C SC++R GCGSR+LN++ + I V + Sbjct: 1 MILETGKVVAVGDHEVWVRTIRESVCQSCSARKGCGSRLLNQMSNGASTQIKVAKTFDVE 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLF-QLLFASDVAALCGAILGGIGGFL 119 G +VE+G+AE +LL+++LLVY++PLV + ++A + LL D+ + G GF+ Sbjct: 61 VGDEVEIGVAEQALLNASLLVYLTPLVAMMILAGVSRSLLHWPDLGVALAGLSGLGLGFV 120 Query: 120 IARGYSRKFAARAEWQPIILSVA 142 + S + + + P +L Sbjct: 121 FVKILSSRLSCNPTYHPQLLRKL 143 >UniRef50_C1D7K9 Positive regulator of sigma E, RseC/MucC n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D7K9_LARHH Length = 151 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 3/153 (1%) Query: 1 MIKEWATVVSWQNG-QALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 MI+ A V+S A V SC+ C GC S +++L V Sbjct: 1 MIETEARVLSLDGESHAWVETRPHGSCALCEGGGGCKSVAISRLFATGQQRYRVANPVGA 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G V + + E LL SAL +Y+ P++ LF A L S+ A++ L Sbjct: 61 AAGDWVIVAVHEQVLLKSALAMYLLPVLALFAGAVLGAYW--SEPASVLLGGTAFAVMLL 118 Query: 120 IARGYSRKFAARAEWQPIILSVALPPGLVRFET 152 I R + + R++++P I+ V P R T Sbjct: 119 ILRRMTANYTHRSDFEPAIIRVGSPRSGCRNRT 151 >UniRef50_Q15R30 Positive regulator of sigma E, RseC/MucC n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15R30_PSEA6 Length = 167 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 86/160 (53%), Gaps = 11/160 (6%) Query: 1 MIKEWATVVSW----QNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD 56 MI+E TV+ ++ ++ VK++C SC ++ CG+ V+ + + +PC+ Sbjct: 1 MIEEVGTVIDVQMRHEHQFIKIATQVKSTCGSCHAKDNCGTGVIARALANKRDALWLPCE 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS-----DVAALCGAI 111 E + GQ V+LGI E LLS++LLVYM PL+ + ++A+ LL +S + + ++ Sbjct: 61 ESVAVGQDVKLGIPESMLLSASLLVYMLPLLTMIVVATTSTLLLSSYSIEGEGWVILSSM 120 Query: 112 LGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFE 151 + + FL + Y + + +++P +L+V P R + Sbjct: 121 VAAVVSFLGVKRYI-SGSTKTQFEPHLLAVL-PSLKTRVD 158 >UniRef50_A0YCK5 Positive regulator for alginate biosynthesis MucC n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCK5_9GAMM Length = 160 Score = 128 bits (322), Expect = 5e-29, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 4/143 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVV----PCD 56 M+KE + + + V + +C+SC+++ GCG +L K+G +H + V Sbjct: 1 MMKETGRIAAIEPDCLWVETIRQTTCNSCSAQKGCGHGILGKIGSGKSHYVRVLLGGSSP 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIG 116 E V +++ I E SL++ A++VY+ P++ + A + D G+++G I Sbjct: 61 EQFVVDDDIDIVIPESSLVAGAMVVYLVPIITMLTAAITVSQWQSGDFWVFSGSVVGFIA 120 Query: 117 GFLIARGYSRKFAARAEWQPIIL 139 G + R ++ +QP++L Sbjct: 121 GLGLVRWHALNNRNNQNYQPVVL 143 >UniRef50_B7UYX7 Positive regulator for alginate biosynthesis MucC n=8 Tax=Pseudomonas RepID=B7UYX7_PSEA8 Length = 151 Score = 128 bits (321), Expect = 7e-29, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 1/145 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLG-PQTTHTIVVPCDEPL 59 MI+E VV+ + G V +++CSSC++ AGCG ++ +LG + D L Sbjct: 1 MIEEQGRVVATEPGAVWVETVRRSTCSSCSANAGCGQGLMQRLGVGAGRARVRALSDLSL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G V LGI E LL +++L Y+ PL+G F+ A L + + + G + +L Sbjct: 61 RVGDAVVLGIHEDLLLRASVLFYLFPLLGFFVAALLATRAGLVEPLIIVSGLAGLLAAWL 120 Query: 120 IARGYSRKFAARAEWQPIILSVALP 144 + R ++R+ A QP++L + Sbjct: 121 LVRRHARRHADDPASQPVVLRALIS 145 >UniRef50_Q5E311 Sigma-E factor regulatory protein RseC n=38 Tax=Vibrionaceae RepID=Q5E311_VIBF1 Length = 161 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 8/164 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+ ATV+ Q +V C K SC+ C+S+ CG+ +++K P H ++ L Sbjct: 1 MMTALATVLEVQEDIVVVGCQQKTSCNHCSSKDSCGTGIVSKALPGKVHHWAFHTEKKLS 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-----FASDVAALCGAILGGI 115 GQ VE+G+ E +LL SA +VY++PL+ L A L + ++ + ++L + Sbjct: 61 VGQLVEIGLPEKNLLQSAAIVYLTPLLFLLFGALLSEWFLSPMIGLGELTTIVVSVLFAL 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ 159 GG+ +A+ S + E Q +L V P +T+ +A++ Sbjct: 121 GGYQLAKRLSHHIEQKTEQQVSLLRVLGEPV---SDTNLGNAAR 161 >UniRef50_B3PJ98 Positive regulator for alginate biosynthesis MucC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJ98_CELJU Length = 158 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVV---PCDE 57 MI E +VS + V ++ C +C + GCG ++ K G ++ V+ Sbjct: 1 MILETGKIVSIEPEGVWVETIQRSVCGTCKAEKGCGQSLMAKWGANPSYLWVLLEGRDPA 60 Query: 58 PLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGG 117 G +++GI E ++ ++LL Y+ PL+ + L A Q+LFASD+A+ GA+ G + G Sbjct: 61 HYRIGDDIQIGIPEDVVVKASLLAYVMPLLLIVLGAVGGQVLFASDLASGLGALGGLVLG 120 Query: 118 FLIARGYSRKFAARAEWQPIILSVALP 144 L R ++ + + QP+++ P Sbjct: 121 GLFLRWHAVRSRYDSRLQPVLVDERKP 147 >UniRef50_A4BBJ3 Positive regulator for alginate biosynthesis MucC n=1 Tax=Reinekea blandensis MED297 RepID=A4BBJ3_9GAMM Length = 162 Score = 125 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 6/144 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGP----QTTHTIVVPCD 56 +I+E VV + +V+ ++C SC +R GCG VL + G Q+ + +P D Sbjct: 5 LIQETGQVVRVDGDEVIVAVVRTSACQSCKARQGCGQAVLAEWGSAEHQQSKNHFRIPLD 64 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIG 116 L PG VELG+ E ++ A+LVY+ PLV F++ + + S++ L G +LG Sbjct: 65 RSLKPGDLVELGMPEDTVSRVAMLVYLLPLVVAFVVLLISSAMGLSELWQLVGLVLGFGV 124 Query: 117 GFLIARGYSRKFAARAEWQPIILS 140 G IAR S++ + P IL Sbjct: 125 GVAIARRASQQ--KVSALTPQILR 146 >UniRef50_B4RVA9 Sigma-E factor regulatory protein RseC n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RVA9_ALTMD Length = 148 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E ATVV+ V +K++C++C +++ CG+ V+++ T + + P+ Sbjct: 1 MIRETATVVAIDGDSVTVEAAIKSTCNACEAQSDCGTGVISRAIAPKTQQLTLRTPMPVR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAA--LCGAILGGIGGF 118 GQKV +GI E +LS++ +Y+ PLV + + L + L + + + Sbjct: 61 IGQKVTVGIPEAGILSASAWLYLLPLVAFIAAYAGAETLLSQSGVVHELWAMVPSAVITY 120 Query: 119 LIARGYSRKFAA--RAEWQPIILSVA 142 + R + K A++QP++LS A Sbjct: 121 AVYRLIAYKLRRIEGAKYQPVLLSTA 146 >UniRef50_D0I4M3 Sigma factor RpoE regulatory protein RseC n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I4M3_VIBHO Length = 164 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 4/147 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI A V +G V C K SC SCAS+ CG+ +++ P I VP ++ + Sbjct: 1 MITALAEVTGSGDGYLTVRCQQKTSCGSCASKNTCGTGIVSNALPGKVMDIRVPSEKAIA 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL----FASDVAALCGAILGGIG 116 G VE+G+ E ++L SA++VY+ PLV A L Q+L A + + ++L G+ Sbjct: 61 AGTLVEIGLEEQTILKSAVVVYILPLVFAVSGAFLGQILADLMAAGEGVIILSSLLAGVL 120 Query: 117 GFLIARGYSRKFAARAEWQPIILSVAL 143 G ++AR +SRK P +L V Sbjct: 121 GVVVARCFSRKLEQEIGTTPKLLRVLG 147 >UniRef50_Q0A8Z6 Positive regulator of sigma E, RseC/MucC n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8Z6_ALHEH Length = 147 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 5/146 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI++ ATV++ V +++CS CA+++GCG+ L + P + V + Sbjct: 1 MIEQQATVMARDGDHVWVEAHRQSTCSGCAAQSGCGTGALGRWLPGAVTRLRVADPLGVR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-----SDVAALCGAILGGI 115 PG++V + +AEG++L +++VY+ PL+GL A + L A DV AL G + G + Sbjct: 61 PGEQVVIAVAEGAVLRGSVMVYLVPLLGLLGGALAGEQLSAWLSHTGDVLALMGGVSGLL 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSV 141 GF +AR R QP+++ Sbjct: 121 LGFALARRVGADRGHRHRMQPVLVRR 146 >UniRef50_C1DQR8 Positive regulator for alginate biosynthesis MucC n=2 Tax=Azotobacter vinelandii RepID=C1DQR8_AZOVD Length = 156 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 1/154 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKL-GPQTTHTIVVPCDEPL 59 MI+E VV+ + + +A+C C + GCG + L P+ I PL Sbjct: 1 MIEEPGRVVAIEREAVWIEALDEAACPGCTASVGCGRWSFDWLETPRRRRRIRALSVMPL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G V +GI E LL S L +Y+ PL+GLF+ Q L + + LG + + Sbjct: 61 RVGDAVVVGIREDFLLRSTLAIYLLPLLGLFVCTIAIQQLGFGESLMIPAGFLGFVSVWA 120 Query: 120 IARGYSRKFAARAEWQPIILSVALPPGLVRFETS 153 + R SR+ QP++L + + Sbjct: 121 MVRRISRRQMNDPTLQPVVLRALPGASEGQVRQA 154 >UniRef50_Q47WP1 Sigma-E factor regulatory protein RseC n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47WP1_COLP3 Length = 159 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 10/159 (6%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDE--- 57 MIKE A VV+ + GQ V+ +K++CS CA CGS + K PQ T+ +P D Sbjct: 1 MIKELANVVAIEAGQVTVTSQIKSTCSGCAQVDTCGSGQIAKALPQAKLTLTLPYDISVT 60 Query: 58 --PLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-----FASDVAALCGA 110 PL G V L + E +LSSA VY+ PL+GL ++L Q L ++ AL Sbjct: 61 GVPLKEGDCVVLALPEKHILSSAGQVYLLPLLGLITFSALGQWLLKQQILPHELFALGLG 120 Query: 111 ILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVR 149 ++GG G+ A+ ++ QP I+ V P +V+ Sbjct: 121 LIGGYLGYRFAKFQQKQGKQSENLQPKIIEVLPSPNIVK 159 >UniRef50_B9ZJG2 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJG2_9GAMM Length = 151 Score = 121 bits (304), Expect = 6e-27, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 4/148 (2%) Query: 9 VSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELG 68 +S + A V + +++C SC++R GCGS VL+++ + + + L G +V +G Sbjct: 2 LSAEAHSARVRIERQSTCGSCSARTGCGSGVLSEVLGRKAVEVTIGHPGQLRAGDRVVIG 61 Query: 69 IAEGSLLSSALLVYMSPLVGLFL--IASLFQLLFASDVAALCGAILGGIGGFLIARGYSR 126 I + +L+S AL +Y+ PL+GL + + + G + G R + R Sbjct: 62 IRDQALVSGALAMYLLPLLGLVAVPGLLMLAWPLLGEGWLMLAGAAGFVLGLGGVRYWMR 121 Query: 127 KFAARAEWQPIILSVALPPGLVRFETSS 154 + P+ L G+VR + Sbjct: 122 H--RAPDLAPVFLRREPDAGVVRAQGRP 147 >UniRef50_A0Z443 Sigma factor algU negative regulatory protein MucC n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z443_9GAMM Length = 159 Score = 121 bits (304), Expect = 8e-27, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 6/152 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPC----D 56 M++E VV+ ++ V + C CA+RAGCG ++++ + Sbjct: 1 MLREIGRVVAVESASVWVETIPSSLCGKCAARAGCGQGIVSRTTGHRGLVEALETSTVRA 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIG 116 + +VE+ + E ++L +LLVY++PL+ + Q + A + +LG Sbjct: 61 QDCRVDDEVEIELPESAVLKGSLLVYLAPLLFGITAVLIAQ--PYGEFATVIAFLLGLGA 118 Query: 117 GFLIARGYSRKFAARAEWQPIILSVALPPGLV 148 GF+ R ++ R ++P + SV + Sbjct: 119 GFVAVRVATQWVLPRQSFEPRLSSVVHAQPIT 150 >UniRef50_A1SR27 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SR27_PSYIN Length = 149 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 5/149 (3%) Query: 1 MIKEWATVVSWQNGQ----ALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD 56 M+ E +++ + + A + K++CSSC + CG V++K +P Sbjct: 1 MVAEKGKIIAIEKSEGKTLAHIEYISKSACSSCQNNDTCGVGVVSKTFSDKALQFTIPYA 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-FASDVAALCGAILGGI 115 + + + VEL I+ L+ SA+LVY+ PL+ A + + ++ + AI Sbjct: 61 KEMEVDKFVELNISNNDLIKSAMLVYLVPLLFFITSALIAKQFNITNEAIIILIAISWAA 120 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVALP 144 GF+I ++K + +I S + Sbjct: 121 AGFVITHFVTKKLYPQKSINQLISSKTIQ 149 >UniRef50_Q7VM35 Possible sigma-E factor regulatory protein n=1 Tax=Haemophilus ducreyi RepID=Q7VM35_HAEDU Length = 142 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 1/142 (0%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+ E ATVV +QNG+ALV C VK +C +C ++A CG+++L+ L + + + PLV Sbjct: 1 MMVETATVVQYQNGKALVRCSVKTACGNCGAKADCGTQLLSSLVKERVPHFELSVNMPLV 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G V++G+ E +LL S +Y+ PL+ L A F LFA+++ + + F Sbjct: 61 AGDMVKIGLPEQTLLWSIFWIYVVPLMVLIGSAVGFTQLFANELVVVFMMFICTSMTFFS 120 Query: 121 ARGYSRKFAARAEWQPIILSVA 142 + K ++ PI L Sbjct: 121 IKKIIDK-KQLSQLNPIFLGRV 141 >UniRef50_B7RX57 Positive regulator of sigma(E), RseC/MucC superfamily n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX57_9GAMM Length = 158 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 6/148 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVV----PCD 56 M+ E VV+ + V K +C SCA++ GCG +LN++ I Sbjct: 1 MLLETGRVVAVETDAVWVETIRKTTCGSCAAQKGCGHGLLNRISEGHRSLIRALPGGINP 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS--DVAALCGAILGG 114 + +V + I E +L +++VY+ PL+ + A+L L ++ D+ + GA+ G Sbjct: 61 QDCRVDDEVSISIPEAVILRGSMVVYILPLLLMLASAALGAKLLSTNVDLGSALGAVAGI 120 Query: 115 IGGFLIARGYSRKFAARAEWQPIILSVA 142 GF++ R ++ + QP ++ V Sbjct: 121 TLGFVLVRVHAHRHRDDKNLQPTLVKVL 148 >UniRef50_B8F3K6 Sigma-E factor regulatory protein n=7 Tax=Pasteurellaceae RepID=B8F3K6_HAEPS Length = 142 Score = 119 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 2/143 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQT-THTIVVPCDEPL 59 M+ E ATV+ +QNG A V C K+SC SC +++ CGS+ L+ L + + PL Sbjct: 1 MMIEQATVIQYQNGIARVQCQAKSSCGSCVAQSHCGSKALSALAGEKFAPQFDLVVAMPL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G KV++G+AE SLL +Y PL + L + ++ G + F Sbjct: 61 QVGDKVKIGLAERSLLEGVFWLYAVPLFVIVLSTLVLSQWLNHELWVAAGVLCTTAVTFF 120 Query: 120 IARGYSRKFAARAEWQPIILSVA 142 + + + ++A++ P+ L Sbjct: 121 MIKR-AVAQKSQAQFIPVFLGKV 142 >UniRef50_C5S2D5 Sigma-E factor regulatory protein n=2 Tax=Actinobacillus minor RepID=C5S2D5_9PAST Length = 149 Score = 118 bits (296), Expect = 5e-26, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 2/145 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQT-THTIVVPCDEPL 59 MI E A V+S+Q+G A V C K +C CA++ CGS+ L+ L + + + +E L Sbjct: 1 MIIENAMVLSYQDGIAQVQCYAKQACGGCAAQKNCGSKALSGLAGEKLAQVLEIKVNEDL 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G+ ++LGI E +LL S VY PL+ L L A + +++ G I FL Sbjct: 61 SAGEMIQLGIPEMTLLKSVFWVYCIPLMILILSAVVLSQFIINELWLAFGMIFFTACSFL 120 Query: 120 IARGYSRKFAARAEWQPIILSVALP 144 + + E PI L Sbjct: 121 MVKKII-AHQQLTELTPIFLGKVRE 144 >UniRef50_Q3IDL5 Putative regulator of sigma E (Sigma 24) factor n=2 Tax=Pseudoalteromonas RepID=Q3IDL5_PSEHT Length = 149 Score = 118 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 4/145 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI++ VV+ A + K +C C R CGS+V +KL T D P+V Sbjct: 1 MIEQTLKVVALSGHIAHLEAQQKQACEGCNGR--CGSQVFSKLFGSAKKTFPYKFDTPVV 58 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASL-FQLLFASDVAALCGAILGGIGGFL 119 GQK+ L + + ++ A VYM PL A + +LL ++ + A LGG GFL Sbjct: 59 VGQKITLSLDDSHVVKHAFTVYMLPLFLSLGFALVAAELLLVTEGWQILAAALGGGIGFL 118 Query: 120 IARGYSRKFAARAEWQPIILSVALP 144 +A+ + + F + I ++LP Sbjct: 119 MAKMWVKSFRHDIKVI-KIHPISLP 142 >UniRef50_B2A247 Positive regulator of sigma E, RseC/MucC n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A247_NATTJ Length = 151 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 14/146 (9%) Query: 4 EWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQ 63 + V+ ++ V + ++C +C + C + T + + G Sbjct: 10 QVGKVIERKDNYVTVEIERHSACKNCGA---CDFG----MSGNKTSELELENTVNAEVGD 62 Query: 64 KVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-----FASDVAALCGAILGGIGGF 118 +V + + ++ ++ L+Y+ PL L L L ++ ++ L IL + Sbjct: 63 EVVVDMEGKDIVLASFLIYLFPLFSLVLGLFLGNMVAAEINGDENLIGLAFGILFMGFSY 122 Query: 119 LIARGYSRKFA--ARAEWQPIILSVA 142 + Y K +++P IL Sbjct: 123 TGLKMYDNKVKTSQPQKFKPKILKKL 148 >UniRef50_Q31HP7 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HP7_THICR Length = 167 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 8/133 (6%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHT-IVVPCDEPLV 60 + V ++G A VS + CS C ++ CG+ VL +L + I V Sbjct: 22 LLAQGRVEKVEDGMAYVSTQRETGCSGCQTQKSCGTSVLAQLFSPKSTAPIQVINTLEAK 81 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQ-------LLFASDVAALCGAILG 113 G +V L + E L+ +L+ Y PL+GLF+ A LF+ + + D A+ G ++G Sbjct: 82 EGDEVILSMDESQLIKHSLMGYGLPLLGLFIGAILFKIAIASFFQVPSQDGVAIVGGVIG 141 Query: 114 GIGGFLIARGYSR 126 + G+ I + Y R Sbjct: 142 LLLGWGITKKYYR 154 >UniRef50_A8ZW82 Positive regulator of sigma E, RseC/MucC n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZW82_DESOH Length = 152 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 12/153 (7%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M E V+ A + A+C C S+ C + +G + Sbjct: 1 MATEEGIVIRTSGTSAWIRTQRAAACEHCQSKDSCKT-----MGGGNDMEVEAANRVEAR 55 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF-------ASDVAALCGAILG 113 G +V + A SL+ + L+YM P++ L A + L V + Sbjct: 56 TGDRVVVSFATASLIKATFLIYMFPILCLMAGAGIGVRLSQTVFPSVDQSVLSAVIGFGA 115 Query: 114 GIGGFLIARGYSRKFAARAEWQPIILSVALPPG 146 + + R + A +++P+I+ V Sbjct: 116 FVLAVVFVRIRGNRMAKEDQYKPVIIRVLKNRP 148 >UniRef50_Q21IH1 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IH1_SACD2 Length = 156 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 10/154 (6%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+ E A VV+ ++ V +++C+ C ++ GCG ++L T + Sbjct: 1 MLSETAKVVAVESDGLWVETHQQSACNQCRAKNGCGQKLLAGGPSNATLVKAIFNAASPS 60 Query: 61 ----PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIG 116 G V +GI E +L++ A + Y+ PL+ + + SD A+ G + Sbjct: 61 EIWTVGDNVVIGIEERALINGAFMAYVLPLLFMVAAVVAGSFVGLSDPVLALVALAGVLL 120 Query: 117 GFLIARGYSRKF------AARAEWQPIILSVALP 144 G LI + ++ + +Q ++++ A Sbjct: 121 GGLIVHLHGKRQLSTINSGGESCYQAVVMAKAAS 154 >UniRef50_C5CGF6 Positive regulator of sigma E, RseC/MucC n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGF6_KOSOT Length = 147 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 4/147 (2%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 + E A V + A+++ + +C+ CA++ C N +T + + P Sbjct: 1 MTEQAIVKKVEQEYAILTKSREEACAMCAAKNMCSVS--NSTTGKTMTIRAMKNGIDVKP 58 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G VE+ + S A L+Y PL+ + L S+ A+ +L G +L+ Sbjct: 59 GDIVEIEVPNFSATKLAFLLYGLPLIAFIITMMGLVSLGISEGFAVIVGLLAVAGVYLLL 118 Query: 122 RGYSRKFAARAEWQPIILSVALPPGLV 148 Y +K R + P IL Sbjct: 119 SIYDKK--NREKLMPRILRKVGKSNGF 143 >UniRef50_B8CXR4 Positive regulator of sigma E, RseC/MucC n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXR4_HALOH Length = 143 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 11/147 (7%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++E V+ + + V +++CS C + CG L + V Sbjct: 1 MEELGKVIKTEGDKLTVKIIRRSACSKCGHK--CG---LAGAHEVDEIEVEVDNTVGAKE 55 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASL------FQLLFASDVAALCGAILGGI 115 GQ V+L + E L+ +++LVY+ P++ L + S+ A + G+I+ I Sbjct: 56 GQVVKLEMGEQPLVVASMLVYLLPIISLIAGYFITFSLVKALGFKPSEAAGVIGSIIFFI 115 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVA 142 F + + + + ++ P + + Sbjct: 116 LSFYLLKVVDKFLSFNRKYHPRVSEIV 142 >UniRef50_Q47EG3 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Dechloromonas aromatica RCB RepID=Q47EG3_DECAR Length = 147 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 2/138 (1%) Query: 5 WATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQK 64 A V + + ALV + C C + GCG + L ++ T V G Sbjct: 12 RAVVRAREGASALVEVEQ-GGCGRCHEKGGCGGQHLTQMFCAGPKTYQVDNAIGADIGDH 70 Query: 65 VELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGY 124 V + +A GS+ +A L Y PL+G A + FA D A+ GA G I FL R Sbjct: 71 VTIAVAAGSVRHTANLAYGVPLIGCIGGAVIG-ASFAGDGGAVLGAASGLILSFLYIRFR 129 Query: 125 SRKFAARAEWQPIILSVA 142 S+ A + +P I+S + Sbjct: 130 SQANAGNSTERPHIISRS 147 >UniRef50_C6P3S2 Positive regulator of sigma E, RseC/MucC n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3S2_9PROT Length = 147 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGP-QTTHTIVVPCDEPL 59 M++ A V+ A V C C S GCGS L KL V Sbjct: 1 MLEMRAIVIHVHGDSASVKPLGTGGCGHCDSEGGCGSGTLTKLFCSNKPRLFNVSNAARA 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF----ASDVAALCGAILGGI 115 + G +VE+ I +G+LL A+ +Y+ P+V L + + L D A+ GA+ G Sbjct: 61 MEGDEVEVTIPDGALLRGAMKMYVVPMVLLLVGGAAGSGLATATVGHDAYAVVGALFGLA 120 Query: 116 GGFLIARG 123 GF+ A+ Sbjct: 121 IGFIYAKL 128 >UniRef50_Q1YS34 Positive regulator for alginate biosynthesis MucC n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS34_9GAMM Length = 152 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPC---DE 57 MI E +V+ + V K++C C + GCG + L+KL +T V+ Sbjct: 1 MILENGIIVAVEADGLWVETIQKSACEVCVAEKGCGQKFLSKLAGKTVSIRVLRNKKSSA 60 Query: 58 PLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGG 117 GQ V +GI E ++ ++LLVY+ P+ A L SD+ A+ GA+ G + G Sbjct: 61 EYSVGQSVTIGIPEDIIVMASLLVYLLPIFAAIGGAWL---FSGSDLQAVGGALGGLLLG 117 Query: 118 FLIARGYSRKFAARAEWQPIILSVALPPGLVRFE 151 L+ +S K + P+++ + P ++ F+ Sbjct: 118 GLMVNLHSVKQRDDMRFNPVLIEEPVQPSILNFQ 151 >UniRef50_A0Y589 Putative regulator of sigma E (Sigma 24) factor n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y589_9GAMM Length = 149 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 4/145 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI++ TVV+ A + + K +C+ C R CGS+V +KL T+ + P+ Sbjct: 1 MIEQTLTVVALSGHTAHLEAEQKQACAGCNGR--CGSQVFSKLFGTAKKTLPYKFESPVE 58 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPL-VGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 GQK+ L + + ++ A VYM PL + L + +LL + + A +GG+ GF Sbjct: 59 IGQKITLSLDDSHMVKHAFAVYMLPLFLSLVFALATSELLLMGEGWQIFAAAVGGVLGFY 118 Query: 120 IARGYSRKFAARAEWQPIILSVALP 144 IA+ + + I +++P Sbjct: 119 IAKTRVKSLRHDIKV-VKIHPISIP 142 >UniRef50_B0KB45 Positive regulator of sigma E, RseC/MucC n=10 Tax=Thermoanaerobacter RepID=B0KB45_THEP3 Length = 146 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 14/147 (9%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +KE A VVS + QA V ++CS C + C S + T + + Sbjct: 1 MKERAIVVSKRGNQAEVEVIRTSACSKCRA---CSSGS-----NKQTLKVWAENETNAEV 52 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF------ASDVAALCGAILGGI 115 GQ VE+ + +LLS+ ++Y+ PL G L L L ++ + +L I Sbjct: 53 GQIVEIEMESRALLSATFILYVIPLAGFILGVILGLKLADILNIMWKELFSFLIGLLFII 112 Query: 116 GGFLIARGYSRKFAARAEWQPIILSVA 142 F +R F + I++V Sbjct: 113 LVFAGIYANNRFFEKSRMFTARIVNVL 139 >UniRef50_C5V4B5 Positive regulator of sigma E, RseC/MucC n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4B5_9PROT Length = 141 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++ A VV + G LV D + CS C + GCGS + +L V Sbjct: 1 MLETRAVVVRKEAGVTLVRADGASGCSVCEGK-GCGSSKVTQLFCNKPREFQVENRINAA 59 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS-DVAALCGAILGGIGGFL 119 G +V + +G++L LVY+ PL +F A+L + D GA+ G + GF Sbjct: 60 VGDEVIVATVDGTVLRGISLVYLLPLALMFAAATLASVWSGGQDGYVAAGALSGVVAGFA 119 Query: 120 IARGYSRKFAARAEWQPII 138 IA+ S + + + + + Sbjct: 120 IAKWISIRPSRQQPYITRL 138 >UniRef50_B6BUJ9 Positive regulator of sigma(E), RseC/MucC superfamily n=1 Tax=beta proteobacterium KB13 RepID=B6BUJ9_9PROT Length = 139 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 1/135 (0%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 + + VV + V C C GCG+ + KL + I + +E Sbjct: 1 MSDKGIVVDVFMNKISVESYRDKPCGLCGQTQGCGNSLWGKLLNHKKNKIQINTEEKFTK 60 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDV-AALCGAILGGIGGFLI 120 G VE+ E LL +L++Y PL+ + + +L Q +F +++ ++ ILG G L+ Sbjct: 61 GDIVEMHYDEKKLLRISLIIYFIPLLSVLIFLALAQYIFGNNIPISIFSLILGFFVGLLL 120 Query: 121 ARGYSRKFAARAEWQ 135 +R + + A + Sbjct: 121 SRYFVQSMNAELDIT 135 >UniRef50_Q2W409 Positive regulator of sigma E activity n=2 Tax=Magnetospirillum RepID=Q2W409_MAGSA Length = 180 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 2/146 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGC--GSRVLNKLGPQTTHTIVVPCDEP 58 M++ +A VV+ G+A + SC C S C G ++ + Q +P D Sbjct: 23 MVEGFARVVAISGGKAWAEPEQAPSCGGCHSAGLCSIGKQIGDPSARQMAKRFALPGDLG 82 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF 118 L G+KV +GI E +L AL Y PL+ L + L Q L SD A GA+ G + G Sbjct: 83 LTVGEKVVVGIREDTLTKGALTAYGLPLLTLLIGGILGQELGHSDGMAALGAVGGMVIGL 142 Query: 119 LIARGYSRKFAARAEWQPIILSVALP 144 L AR + +AR P L A Sbjct: 143 LGARFIAGILSARGVLTPRYLRRAFE 168 >UniRef50_Q608M2 Sigma factor regulator MucC n=1 Tax=Methylococcus capsulatus RepID=Q608M2_METCA Length = 146 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 6/148 (4%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V + V K++C SCA GC + ++ +L + + + + Sbjct: 1 MIEEEAIVTQVEEHAIWVEKFRKSACGSCA--GGCSTSLVARLLGGKPLRLRIATEARVA 58 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAAL--CGAILGGIGGF 118 PG +V +G+ EG+LL+ + +Y+ PL L A L +LL A ++A G+I GG+ G Sbjct: 59 PGDRVIIGVEEGALLAGSFRMYLFPLFSLIGGALLGKLLAAQGLSATAEAGSIAGGLVGL 118 Query: 119 LIARGYSRK--FAARAEWQPIILSVALP 144 + + R P+ + Sbjct: 119 GLTLVLLKYCPSLQRQNLHPVFIRRISR 146 >UniRef50_A8MGM3 Positive regulator of sigma E, RseC/MucC n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MGM3_ALKOO Length = 142 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 15/150 (10%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +++ ++S +A VS +++C C GC + Sbjct: 1 MRQCGVIISIDGERAKVSLQKQSACGDC---KGCRWGE-----DNMKMEVEAINRIKAKV 52 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF-------ASDVAALCGAILGG 114 G +VE+ + ++L++A + Y+ PL+ L L L ++ +V A ++ Sbjct: 53 GDRVEIDMEHQNVLAAAFIAYVIPLITLILGVILGSMILDKIDIVQNKEVGAGIFGLVLT 112 Query: 115 IGGFLIARGYSRKFAARAEWQPIILSVALP 144 + I R F ++ PII ++ Sbjct: 113 AISYGIIRLKENSFKQNQQFIPIITGISHE 142 >UniRef50_C6WX93 Positive regulator of sigma E, RseC/MucC n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WX93_METML Length = 156 Score = 113 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 3/145 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V+ Q G + + + +CS C R GCG+ K+ + T + Sbjct: 1 MIEEHAVVIRCQQGAVELEIERRTACSICGQRRGCGNATWGKMLGHKSQTFLAENGINAQ 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G V +GI E L S L+Y+ PL+ L + L + LF + + + A+ G GF Sbjct: 61 VGDSVVVGIDERMALRSVFLLYVLPLLSLIFFSVLAEALFNNQLYVVLAAVFGLCIGFFW 120 Query: 121 ARGY---SRKFAARAEWQPIILSVA 142 + Y + A +Q ++L A Sbjct: 121 VKWYLMGRGRSAGVNSYQAVVLRYA 145 >UniRef50_C5JB30 Positive regulator of sigma E activity n=1 Tax=uncultured bacterium RepID=C5JB30_9BACT Length = 168 Score = 113 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 1/146 (0%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++ +A VVS + G A + + +SC C S CG++ + L Sbjct: 17 LEGFARVVSLEGGTAWLEPEGMSSCGGCKSSGLCGTKGFFGSSMDGR-RFPLENKVGLTV 75 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G++V +G E SL+ +AL+ Y PL+ + + A + Q + SDV A+ GA+LG G L+A Sbjct: 76 GERVVVGTYEDSLMRAALVAYAVPLLVMLVAAVVGQAMTGSDVVAVGGAVLGLGLGILLA 135 Query: 122 RGYSRKFAARAEWQPIILSVALPPGL 147 R + + + R + P L A GL Sbjct: 136 RLRAGRLSRRGDLTPRFLRRAYNEGL 161 >UniRef50_A0L8I7 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8I7_MAGSM Length = 159 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 10/152 (6%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++E VV + A+++ K++C +C C + L+ + + Sbjct: 1 MMQEQGKVVELEGAFAIIATQRKSACGNCGGETSCNT--LSGGLGKKPVLFRAYNEAQAK 58 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFL--------IASLFQLLFASDVAALCGAIL 112 G V L I EG+ LS++ L Y P++ L + L L +++ +L Sbjct: 59 IGDNVVLEIREGAFLSASFLAYGMPMIALIVTGLVVRSIALGLGLELESAEGLGALSGLL 118 Query: 113 GGIGGFLIARGYSRKFAARAEWQPIILSVALP 144 G FL R + + E P++ S+ P Sbjct: 119 ALGGTFLFLRRFYAGQDIKPENMPVVRSILHP 150 >UniRef50_A1AWA8 Positive regulator of sigma E, RseC/MucC n=3 Tax=Gammaproteobacteria RepID=A1AWA8_RUTMC Length = 125 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 2/126 (1%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +KE V+ N + + C SC + +GCG+ +L Q + P + Sbjct: 1 MKEQFEVIEIDNEIMTLKVNQTGGCHSCEASSGCGTGILANYFNQYS-VFNKPYQNGVSV 59 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-SDVAALCGAILGGIGGFLI 120 G V L I+ L A ++Y++P++ LFL A++ F + + + +G I Sbjct: 60 GDFVTLEISSSELFLRAFMLYIAPILTLFLGAAIGMAFFPQQEFWHILFSGIGLIVMLFS 119 Query: 121 ARGYSR 126 R + + Sbjct: 120 CRWFFK 125 >UniRef50_C0N4S0 Positive regulator of sigma(E), RseC/MucC superfamily n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N4S0_9GAMM Length = 141 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 70/127 (55%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI++ ATV+S Q V + +++C C +R GCG+ +L K Q I V + L Sbjct: 1 MIEQKATVISRDIHQVWVEAERQSTCGQCQARKGCGTGLLAKHVGQRFSRIAVKTSQDLR 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 GQ+V + I E +LLS A+++Y+ PL+ +F+ A+L ++ + ++ + + G + GF Sbjct: 61 VGQQVMVTIPEQALLSGAVMMYLLPLLLMFVTAALARIANSGELVEIIAGLSGLVAGFYF 120 Query: 121 ARGYSRK 127 + + Sbjct: 121 VKSRLKN 127 >UniRef50_A6TQP8 Positive regulator of sigma E, RseC/MucC n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TQP8_ALKMQ Length = 141 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 15/148 (10%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +K+ TVVS + A V +ASC C + C + + + Sbjct: 1 MKQCGTVVSLEGKMAKVLMQRQASCGDCTA---CKMGQ-----EEMKLEVKALNNANAQV 52 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS-------DVAALCGAILGG 114 GQ+VE+ + ++L++A +VYM PL L + + ++ D+ + Sbjct: 53 GQRVEIDMEHQNVLAAAFIVYMIPLFALMMGIFAGNAMLSALGVENYRDLLTAFAGFIFM 112 Query: 115 IGGFLIARGYSRKFAARAEWQPIILSVA 142 F++ + KF ++ PII + Sbjct: 113 ATSFMVIKIRENKFKTNKDFTPIISEIV 140 >UniRef50_B8KRG3 Positive regulator of sigma E, RseC/MucC n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KRG3_9GAMM Length = 145 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 6/137 (4%) Query: 12 QNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD----EPLVPGQKVEL 67 + V ++C CA+RAGCG L + + + +V++ Sbjct: 2 ETDAVWVETVRSSACGRCAARAGCGHGALASISASKGLIRALTGEHVQASACAIDDEVDI 61 Query: 68 GIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRK 127 + E ++L + LVY+ PLV + + + L ++ A G + G GFL+ R Sbjct: 62 ELPEQAVLYGSFLVYLVPLVLAIVGTIIGEQL--GELGAAAGFVAGIAAGFLLIRWLPTL 119 Query: 128 FAARAEWQPIILSVALP 144 A ++P + +V P Sbjct: 120 TRRWAYFEPRVAAVRRP 136 >UniRef50_UPI0000E11529 positive regulator of sigma E, RseC/MucC n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E11529 Length = 167 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 12/161 (7%) Query: 1 MIKEWATVVSW-----QNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPC 55 MI E + + VS +K +C SC + + C + V+ K Sbjct: 1 MIIEQGIITDITHNAHKEQVIEVSTAIKTTCGSCQAESNCSTSVVAKFFTPKAEAFKFTV 60 Query: 56 DEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-----FASDVAALCGA 110 DE + GQ+VELGI E L+ + +Y+ P++ + +L L F ++ AL Sbjct: 61 DETVSVGQQVELGITENRLVQVSFYLYLLPIMVFVITTALSIELLADTAFGHELVALLVG 120 Query: 111 ILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFE 151 ++ IG F I G + A + + P ++ + + Sbjct: 121 LMSTIGTFFIISGKLK--ADQQQSTPALIKILPMKSQFPVQ 159 >UniRef50_D0KYN1 Positive regulator of sigma E, RseC/MucC n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYN1_HALNC Length = 183 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 70/144 (48%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 I+E VV+ + ++ C SC+SR GCG ++ K + H + V D P+ Sbjct: 39 IQEEGVVVAVAADGVWIETQRQSGCQSCSSRGGCGVGIMQKALNRRQHRVRVHTDLPVKV 98 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G V+L + +L+ +++L+Y+ PL+GL + A + Q L A+D A+ GA++G L+ Sbjct: 99 GDHVQLLLPAAALVQASVLMYLLPLLGLIVGAMIGQSLLATDAGAIGGAVVGFAAVLLLI 158 Query: 122 RGYSRKFAARAEWQPIILSVALPP 145 + + P I V Sbjct: 159 ARQQNGLSRNGRYAPRIERVLFKS 182 >UniRef50_B9K8X8 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8X8_THENN Length = 131 Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 11/141 (7%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 + E V + + +V+ ++C SC +++ C S + E L P Sbjct: 1 MIERMFVKEVKENKVVVTKARTSACGSCPAKSICVSG------NEINLEAEWNEKEQLKP 54 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G +V + I E + + +VY PLV + L D A+ G + + Sbjct: 55 GDEVIVDIPEYDPMKVSAIVYFVPLVIFAAVVITGYSLNWKDWLTFFSALGGVFVYYSLL 114 Query: 122 RGYSRKFAARAEWQPIILSVA 142 R + P I+ A Sbjct: 115 RFRKKDKKP-----PRIIGKA 130 >UniRef50_A3JFQ7 Sigma factor algU negative regulatory protein MucC n=1 Tax=Marinobacter sp. ELB17 RepID=A3JFQ7_9ALTE Length = 149 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 3/142 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI E VV+ V +++C SC++R+GCG RVL + + V Sbjct: 1 MITESGRVVAVSGSTVWVQTIRQSACQSCSARSGCGQRVLAAASGGRANQVQVLNTLHAG 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-FASDVAALCGAILGGIGGFL 119 G V LGIAE +LL ++LLVY PL+ + + L SD A+ A LG GF Sbjct: 61 VGDDVTLGIAEQALLQASLLVYALPLLLMVAASMAASQLVPGSDGVAILAAGLGLGAGFF 120 Query: 120 IARGYSRKFAARAEWQPIILSV 141 +AR + R+ ++QP ++ V Sbjct: 121 VARLWQRRMP--GDYQPHLMKV 140 >UniRef50_Q47FZ1 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Dechloromonas aromatica RCB RepID=Q47FZ1_DECAR Length = 180 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 9/159 (5%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCAS--------RAGCGSRVLNKLGPQTTHTIVV 53 ++ A VV Q + + SC CAS R G + + Sbjct: 22 VEGIARVVRVTGDQVWLEPEQTTSCGHCASSASCGASAREAAGIGTVTSRLQARRFMLDN 81 Query: 54 P-CDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAIL 112 P G++V +G++E +LLS++L Y PL+ S+ Q ++ D+ + G Sbjct: 82 PEGSSGFHEGERVVVGVSERALLSASLTAYGVPLLFALTAGSVIQAVYGEDLTTMLGMAG 141 Query: 113 GGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFE 151 G G L+AR +R+ AAR + P L A P + Sbjct: 142 GLFLGLLVARLNARRLAARGDLAPRFLRRARPDETCGTD 180 >UniRef50_B9Z3B2 Positive regulator of sigma E, RseC/MucC n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z3B2_9NEIS Length = 155 Score = 108 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 2/148 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++ A V++ + ALV +SC C AGC + L+++ T + V Sbjct: 1 MVETQARVLATEQAFALVEPRPHSSCRRCDPVAGCRALSLSRIIGSTDRRVRVHNPLGAE 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G V + + + +A LVY+ P GL + S AS+ +L + G Sbjct: 61 AGDWVLVTVPRQHVSMAAFLVYLVPPAGLGVGLSFGA--GASEPVSLLAGAALFVIGLYA 118 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGLV 148 AR R+ QP I ++ L+ Sbjct: 119 ARRELRRRRRSPLLQPTITAIYPSEPLM 146 >UniRef50_C6PD09 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PD09_CLOTS Length = 137 Score = 108 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 17/147 (11%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 + E V + ++G+A V C C + +G + V + L Sbjct: 1 MTEKGCVANIKDGKAKVELLRNDMCGKCHACD---------MGSNNRMMVEVDAIDELKV 51 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF-------ASDVAALCGAILGG 114 G V L I E S+L + +++Y PL+ F+ + S + +L Sbjct: 52 GDNVLLEIRETSMLKATMIMYGIPLLFFFVGVFAGYAVAHIFGIDNFSQMIEAISGLLFT 111 Query: 115 IGGFLIARGYSRKFAARAEWQPIILSV 141 F+ + YS+K + E++P+I + Sbjct: 112 AISFIGIKYYSKKVINK-EYKPVIKKI 137 >UniRef50_B7IFW0 Positive regulator of sigma(E), RseC/MucC superfamily n=1 Tax=Thermosipho africanus TCF52B RepID=B7IFW0_THEAB Length = 135 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 14/140 (10%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +KE T+ + D + CSSCA C + + +L + + P Sbjct: 1 MKELFTIAKVDEKYIYLERD-TSGCSSCAISGSCNVKSVEQLKVEKDNKFE------YFP 53 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G V L + L A L+Y P++ L L SL L SD + +L G F I Sbjct: 54 GDFVILDLKYRPALL-AFLLYGLPVILLVLGVSLGTYLKLSDYFSFLIGLLFMSGAFAIF 112 Query: 122 RGYSRKFAARAEWQPIILSV 141 R + ++ ++P I+ V Sbjct: 113 RIWDKR------YKPKIVDV 126 >UniRef50_A1HP18 Positive regulator of sigma E, RseC/MucC n=2 Tax=Clostridiales RepID=A1HP18_9FIRM Length = 139 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 16/145 (11%) Query: 3 KEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPG 62 ++ V+ A V C +C + C + PG Sbjct: 4 EQEGIVIELAGDMARVKTSRHNDCENCGA---C--------PGNAAIVVEASNAIGARPG 52 Query: 63 QKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS-----DVAALCGAILGGIGG 117 Q+V L + E ++L +A +VY+ PL+ LF+ A+ L + G L Sbjct: 53 QRVALQVPEVNMLKAAFIVYVLPLLALFMGAATGHYLAGGLGLPALWLQIGGGGLAFGAS 112 Query: 118 FLIARGYSRKFAARAEWQPIILSVA 142 R R+ + A+ QPII + Sbjct: 113 LAYIRYVDRRAKSNAKMQPIITRIL 137 >UniRef50_Q893Q4 Putative uncharacterized protein n=1 Tax=Clostridium tetani RepID=Q893Q4_CLOTE Length = 147 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 44/150 (29%), Gaps = 11/150 (7%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCS-SCAS-RAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 + + V +A + +SC CA+ GC + + Sbjct: 4 MNQVGYVTKVDGEKAHIIFKRTSSCGDKCANCSGGC---------EIPPLVLDIENTLFA 54 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 PG V + + + Y PL+ + L ++ + ++ A + + Sbjct: 55 EPGDAVAVNMEDNIFFKLTFFAYALPLILMLLGVAIAYITTKNETIAAFTGLGFLAISYG 114 Query: 120 IARGYSRKFAARAEWQPIILSVALPPGLVR 149 I R + ++ + + R Sbjct: 115 ILRIVNNNHVKNQSKSVTMMKILSEEEITR 144 >UniRef50_A4A3V0 Positive regulator of sigma(E), RseC/MucC n=2 Tax=unclassified Gammaproteobacteria RepID=A4A3V0_9GAMM Length = 155 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 13/155 (8%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTH-----TIVVPC 55 M+ E A VV+ + V ++SC SCA+RAGCG +LN + + Sbjct: 1 MLTESARVVAVEETAVWVETLRQSSCGSCAARAGCGHGMLNSARAGVSKGLLKAALPADK 60 Query: 56 DEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS--------DVAAL 107 + VE+ + E L +A L+Y PL+ + L A L +AS D+ Sbjct: 61 TLEVSLHDTVEISVPEQGFLRAAWLLYAMPLLTMLLAAGLADHFWASSGLSQAAMDLRVT 120 Query: 108 CGAILGGIGGFLIARGYSRKFAARAEWQPIILSVA 142 A G G L+ R SR+ +A + QP + V+ Sbjct: 121 VAAASGLGAGLLLLRFLSRRMSADPDLQPRVTGVS 155 >UniRef50_C9XNA0 Putative regulator of the sigma(E) factor n=6 Tax=Clostridium RepID=C9XNA0_CLODC Length = 146 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 14/151 (9%) Query: 2 IKEWATVVS-WQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 + + ++ + A + ++C A CG + V Sbjct: 1 MNQQGFIMEIVDDRTAKLKMQRHSAC------AACGKCATTNSAESKEILVEVDNTIGAK 54 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS-------DVAALCGAILG 113 G VE+ + ++L +A++ Y+ PL+ L + + + + + I Sbjct: 55 VGDHVEVSMDNMNVLKAAVMAYIIPLIALLVGTIGTYYILGAIGMTTGVEAISGLVGICL 114 Query: 114 GIGGFLIARGYSRKFAARAEWQPIILSVALP 144 I +L + +KF E+ P+I + + Sbjct: 115 TIICYLYLKKNDKKFRDSREFIPVITRILID 145 >UniRef50_A6LJM2 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LJM2_THEM4 Length = 132 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 14/140 (10%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++E + + + DV ++C SCA C + ++ L + P Sbjct: 1 MRELFRISKIDDKYLYLERDV-SACGSCALSGKCSVQSVSTLKVEKDKRF------DYFP 53 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G V L + A ++Y P++ L + L L SD+ + + FLI Sbjct: 54 GDFVVLDLKYRPAFL-AFMLYGLPIIMLVVGIGLGVYLKLSDIYSFLIGLGFMSVSFLIN 112 Query: 122 RGYSRKFAARAEWQPIILSV 141 + +K ++PIIL V Sbjct: 113 KVLDKK------FKPIILDV 126 >UniRef50_D2C475 Positive regulator of sigma E, RseC/MucC n=5 Tax=Thermotogaceae RepID=D2C475_THENR Length = 126 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 12/137 (8%) Query: 6 ATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKV 65 V ++G+ +V+ ++C SC ++ C L + C E L PG +V Sbjct: 1 MYVREVKDGKVVVAKARTSACGSCPAKNIC-------LSDNEIKLEIDWCGEDLKPGDEV 53 Query: 66 ELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYS 125 + I E L + LVY PLV + L D A+ + + R Sbjct: 54 VVDIPEYDPLKVSTLVYFLPLVIFAVTVITGYLFRLKDWVTFVLALGSVFAYYSLFRFRR 113 Query: 126 RKFAARAEWQPIILSVA 142 + P IL Sbjct: 114 KDRKP-----PRILRKV 125 >UniRef50_Q3A3J1 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A3J1_PELCD Length = 156 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 14/154 (9%) Query: 1 MIKEWATVVSWQN-GQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 M++E TVV + A+V C C+ CA+ C + + Sbjct: 1 MMQETGTVVELRGCHVAMVLCRKSTFCAGCAAMGLCHVG-----DDGRSMLVETHNVLGA 55 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-------SDVAALCGAIL 112 V G KV L G L ++ L+Y+ PL+ L A L +++ A ++ A + Sbjct: 56 VVGDKVRLASRAGQFLLASFLLYVVPLLALIGGAVLGEIIGAFYTLRIDPNLLAAIFGLS 115 Query: 113 GGIGGFLIARGYSRKFAARAEWQPIILSVALPPG 146 +G F I R SR R + P I+ + Sbjct: 116 FLVGSFFIIRIGSRAI-PRGTFMPEIIEILPGEE 148 >UniRef50_A9BGN6 Positive regulator of sigma E, RseC/MucC n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGN6_PETMO Length = 151 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 4/151 (2%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++E V+ + C SCA + GC I + Sbjct: 1 MREVMDVIDKDESYVYLRTTRTQECESCAMKGGCTLLGGANELNLKAKNIE---KVDVKK 57 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G KV + + E ++ + L Y PL+ I S+ L SD+ + ILG + + Sbjct: 58 GDKVVVELPEVPVVKLSFLAYGIPLIVFLSIVSILYTLGFSDIFSFLAGILGLGITYFLI 117 Query: 122 RGYSRKFAARAEWQPIILSVALPPGLVRFET 152 Y RK + P+IL ++ Sbjct: 118 HQYDRKKLKD-RYLPVILQKLEKKIDLKLHE 147 >UniRef50_A0Q1V3 Positive regulator of sigma(E), RseC/MucC superfamily n=3 Tax=Clostridium RepID=A0Q1V3_CLONN Length = 141 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 59/150 (39%), Gaps = 17/150 (11%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCS-SCAS-RAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 + E + S A V K+ C +CA+ +A C + + + Sbjct: 1 MTEVGYITSVNGNYASVVFKRKSGCGDNCATCKAACSAASITT---------EIENTAGA 51 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS------DVAALCGAILG 113 G KV++ + + + LVY+ PLV + ++ +F+ ++ + I+ Sbjct: 52 KVGDKVKVEMEQKTFNKMLALVYVFPLVMMICGIAIGIKVFSQAGYSNYEMLSFLVGIVA 111 Query: 114 GIGGFLIARGYSRKFAARAEWQPIILSVAL 143 + + I +++K A ++ + I+ + Sbjct: 112 LVISYTILHFFNKKTAKKSNYSLKIVEILK 141 >UniRef50_UPI0000E87B72 hypothetical protein MB2181_02975 n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87B72 Length = 143 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 2/143 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+E A V+ ++ Q V C C GCG+ + K+ + + + + + Sbjct: 1 MIEEQAVVIFKEDDQVSVEIMRTKPCGLCGKTQGCGNSIWGKIFSHKRNKLSIKNNIGVK 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF--ASDVAALCGAILGGIGGF 118 G +V L I E LL S+LL+Y PL+ LF+ + SD+ L GAI G + G Sbjct: 61 VGDRVMLTIEENYLLRSSLLLYGLPLLFLFIGMVFMDTITQKNSDLWVLVGAIFGMLSGL 120 Query: 119 LIARGYSRKFAARAEWQPIILSV 141 ++ + +RK R + +I + Sbjct: 121 ILVKFLARKNHDRLYKEAMITKI 143 >UniRef50_C3KTB5 Sigma-E factor regulator, RseC/MucC family n=9 Tax=Clostridium botulinum RepID=C3KTB5_CLOB6 Length = 145 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 17/149 (11%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCS-SCAS-RAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 +KE + S ++G A V K+ C +CA ++ CGS+ + + + Sbjct: 4 MKEVGYIKSVKDGYASVIFKRKSGCGDNCAGCKSNCGSKSIAT---------DIKDTLGV 54 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS------DVAALCGAILG 113 G VE+ +A S + Y PL+ L + L+F + ++ A ++ Sbjct: 55 SVGDMVEIDMATKSFFAMTFWTYTFPLIMLVIGLVSSLLIFKNLGIKQYELLATAVGLVF 114 Query: 114 GIGGFLIARGYSRKFAARAEWQPIILSVA 142 + + +K + + + + Sbjct: 115 LSISYSVLSHMDKKLGKKQSYTLKMTRIL 143 >UniRef50_C6P606 Positive regulator of sigma E, RseC/MucC n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P606_9PROT Length = 145 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI A VV+ NG+ +V ++ C C SR+ CG L K I V CD + Sbjct: 1 MIVTTARVVAADNGRTMVEPSNESGCGGCKSRSVCGVSGLGKYFSGNRKAIEVQCDASVT 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASD 103 G +++L ++EG +L + LL Y+ P V A + D Sbjct: 61 AGDELQLSMSEGDMLKAGLLAYLLPSVMALAGAGIASAYGWGD 103 >UniRef50_Q3J8D0 Positive regulator of sigma(E), RseC/MucC n=2 Tax=Nitrosococcus oceani RepID=Q3J8D0_NITOC Length = 146 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 54/144 (37%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M++ A V+ A V + + SC C GCG+ + K + Sbjct: 1 MVEASAQVIVKSETYAWVEAERRTSCHGCTLSQGCGTGSIAKYLMIKPIMVKASNPVGAE 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G +V +G+ E + L + L+YM PL+ + L A L L +L G+GG Sbjct: 61 AGDRVIVGLPEKAFLQGSFLLYMVPLLAMLLGAGLGGTLAPHFGGNEGLEVLLGLGGLAG 120 Query: 121 ARGYSRKFAARAEWQPIILSVALP 144 R + +P IL Sbjct: 121 GLLGVRYMRMGPDLEPKILRTVGR 144 >UniRef50_A6TT71 Positive regulator of sigma E, RseC/MucC n=2 Tax=Alkaliphilus RepID=A6TT71_ALKMQ Length = 142 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 18/149 (12%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCS-SCAS-RAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 +++ V G A + ++C SCAS + GC T + + Sbjct: 1 MEKIGVVKEVGEGIATIEIQRVSACGESCASCKGGC---------TPTATYVKATNEVGA 51 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-------FASDVAALCGAIL 112 GQ V+L + +L +A LVYM PL+G+ L + ++ + + Sbjct: 52 QVGQYVKLNMENKKVLKAAFLVYMVPLIGMIFGIGLGIWIGELLSYEGMEELIGIGVGFI 111 Query: 113 GGIGGFLIARGYSRKFAARAEWQPIILSV 141 I + ++ + E + I SV Sbjct: 112 FLILAYFGINRIDKRIRDKNEMRIEITSV 140 >UniRef50_B8FIP7 Positive regulator of sigma E, RseC/MucC n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIP7_DESAA Length = 159 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 10/138 (7%) Query: 18 VSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSS 77 V C C +R GC +G V G +V++ +++ + L + Sbjct: 18 VKSHRNECCDHCEARDGCRV-----MGGGKDMFFEVENSLNAQMGDQVKVRVSDKAFLKA 72 Query: 78 ALLVYMSPLVGLFLIASLFQLLF-----ASDVAALCGAILGGIGGFLIARGYSRKFAARA 132 LVY+ P++ A L A A F + R + +A Sbjct: 73 IFLVYVIPMIAFIGGAFWGNTLGEPLGMDPSATAALAAFGLMGVVFAVVRVIGNRLGQKA 132 Query: 133 EWQPIILSVALPPGLVRF 150 ++P ++ + G V+ Sbjct: 133 GYKPRMVCITARAGDVQE 150 >UniRef50_A1S3X8 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Shewanella amazonensis SB2B RepID=A1S3X8_SHEAM Length = 159 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 8/152 (5%) Query: 1 MIKEWATVVSWQ-NGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 M++E A VV + +G V +VK +C CA+ CG+ + T + E Sbjct: 1 MMEELARVVRVETSGWVTVEVEVKTACGHCAASENCGTGAIASAFAGKTQQFSIKSAETF 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLI-----ASLFQLLFASDVAALCGAILGG 114 G+ + LG+ E +LL +A LVY+ PLVGL L + L F S+ A+L ++LG Sbjct: 61 ENGELIRLGLPESALLKAAALVYLLPLVGLLLGALGGKMAGSVLSFGSETASLVFSLLGA 120 Query: 115 IGGFLIARGYSRKFAARAEWQPIILSVALPPG 146 I +L + ++ + QP+IL+ Sbjct: 121 IVAWLWGKRLAKNLERQT--QPVILARLGKAL 150 >UniRef50_Q5R103 Positive regulator of sigma E activity n=2 Tax=Idiomarina RepID=Q5R103_IDILO Length = 147 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 1/127 (0%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +KE A V + + V+ +K +CS CA + CG+ +L+K+ V ++ P Sbjct: 1 MKEVAEVTAVDGNRVTVTTQLKTACSGCAQVSNCGAGILSKVFADRNAQFTVVTEQTFSP 60 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF-ASDVAALCGAILGGIGGFLI 120 G +V+L + E ++ ALL+Y P++ L L+A L + + + + G F Sbjct: 61 GDQVQLEVPETAVTRFALLLYGLPILTLLLLAVLLENTGTLPEGFVILLSFAGFAFTFWG 120 Query: 121 ARGYSRK 127 + + RK Sbjct: 121 LKRWFRK 127 >UniRef50_B5YEQ6 Positive regulator of sigma(E), RseC/MucC superfamily n=2 Tax=Dictyoglomus RepID=B5YEQ6_DICT6 Length = 136 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 46/146 (31%), Gaps = 15/146 (10%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +KE V+ + +C SC C + T+ + Sbjct: 1 MKEIGQVIEKNGKILKIKFSSSEACHSC---GLCKV-------DEDNLTLNAIDECNANL 50 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQ-----LLFASDVAALCGAILGGIG 116 G V + + + L+Y+ PL+ L L F + +L + Sbjct: 51 GDFVVVEVERKDFFQATFLIYLFPLIAFILGVILGYLTGERYNFDPQLLGFIIGLLFTLM 110 Query: 117 GFLIARGYSRKFAARAEWQPIILSVA 142 + + R ++ + + ++ P+ + Sbjct: 111 SYPLIRLIYKRLSKKQKFIPVAKKIV 136 >UniRef50_C0GG18 Positive regulator of sigma E, RseC/MucC n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GG18_9FIRM Length = 149 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +++ TVV ++ A+V+ +CS C GCG V + + I V Sbjct: 1 MEQVGTVVDVKDDIAIVAVRRHETCSKC---GGCGVAV----SGRGDNYIEAQNVVNAVV 53 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAA----LCGAILGGIGG 117 GQ V++ ++L ++ +VY+ P++ L L L Q++ + I+ +G Sbjct: 54 GQTVKVATDTSNVLKASFVVYIVPMLFLLLGIWLGQVIDGEFGVMARFDIVLGIIFLVGS 113 Query: 118 FLIARGYSRKFAARAEWQPII 138 +L+ RGY +K AA + +I Sbjct: 114 YLVVRGYDKKMAAGEKPASVI 134 >UniRef50_C8WDZ8 Positive regulator of sigma E, RseC/MucC n=5 Tax=Zymomonas mobilis RepID=C8WDZ8_ZYMMN Length = 166 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 6/138 (4%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++ A VV+ + D+ + C+ C+ AGC L K P + +P D + Sbjct: 24 LESCAKVVAVDKDIVWLEPDIASGCAGCSHSAGC-LSALTKKTPAESRRFSLPNDHDFIL 82 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQL-LFASD----VAALCGAILGGIG 116 G++V + + L+ +AL Y PL+ L + A + L D +A+L G +G Sbjct: 83 GEQVIVATSAHLLVKTALFSYGMPLLTLLVFAIFAKYSLGFGDGLAALASLLGLAVGFAC 142 Query: 117 GFLIARGYSRKFAARAEW 134 +L R ++++ ++ Sbjct: 143 VWLGNRYFTKRSGNSLQF 160 >UniRef50_A5N7M4 Predicted sigma factor n=3 Tax=Clostridium RepID=A5N7M4_CLOK5 Length = 137 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 17/148 (11%) Query: 1 MIKEW-ATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 M KE V+ G A V C +C + C + Sbjct: 1 MKKESEGIVIETTEGFARVKASRHGDCKNCGA---C--------PGDNATVLDAKNPIGA 49 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVA-----ALCGAILGG 114 G+ V L + E +++ +A +VY+ P++ +FL + +F + + G I+ Sbjct: 50 KAGEHVILEMREQNMIRAAFVVYIMPIISIFLGVLVGTWIFNAVGYYEMAFKVVGGIVFF 109 Query: 115 IGGFLIARGYSRKFAARAEWQPIILSVA 142 + + + + + A +P+I V Sbjct: 110 VISLVYIKVFDKATAKNDASKPVIKKVL 137 >UniRef50_B0MTP2 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MTP2_9BACT Length = 136 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 4/134 (2%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 I+ V + V +C SC +R CG Q I P P Sbjct: 4 IEHSGVVKRVDAERVCVEITAHGACGSCKAREACGLGQ----TGQKIVEIRTPAAATYRP 59 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G +V + I + + LL Y+ P V L + ++ LL A D AA+ + + + I Sbjct: 60 GDRVTVAITRRTGAVAVLLAYVVPFVVLIGVVAVCYLLGAGDGAAVLAGLGSVVLYYGIL 119 Query: 122 RGYSRKFAARAEWQ 135 RK + Sbjct: 120 WLLRRKIDNAIHFT 133 >UniRef50_D1VS59 Positive regulator of sigma E, RseC/MucC n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS59_9FIRM Length = 142 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 14/139 (10%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCS-SCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 +++ V S +G V ++ C SCAS T + V Sbjct: 1 MEKLGIVKSIVDGYMYVEVSRESPCGVSCASCH-------AACAESKTEIVKVNNLIDAK 53 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS------DVAALCGAILGG 114 G VE+ I ++L LLVY PL+ LF+ + + DV + ++ Sbjct: 54 EGDVVEVHINSRNVLGYFLLVYGLPLLFLFIGTCISYYFLSKTNLKNYDVYSFLIGLVFM 113 Query: 115 IGGFLIARGYSRKFAARAE 133 + + Y +K + + Sbjct: 114 LTAYKFISLYDKKHMSVRD 132 >UniRef50_B1KI54 Positive regulator of sigma E, RseC/MucC n=4 Tax=Shewanella RepID=B1KI54_SHEWM Length = 151 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 9/150 (6%) Query: 1 MIKEWATVVSWQN-GQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 M++E A V+ G V VK +C+ C + CG+ ++K +P D Sbjct: 1 MMEEMAKVLESDGKGWVTVEVQVKNACNHCDNSESCGTSAVSKAFSPKVQRFSIPSDRQY 60 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQL------LFASDVAALCGAILG 113 G+ ++LG+ E LL +A LVY+ PL+GLF ++ L + D + AI G Sbjct: 61 QAGELLKLGLPESVLLKAAALVYLLPLLGLFFGVAVASFITFMFNLTSGDFVVIPFAIAG 120 Query: 114 GIGGFLIARGYSRKFAARAEWQPIILSVAL 143 + + + +++ QP+I+S Sbjct: 121 ALLFWAKGKKMAKRMEDDT--QPVIISHLG 148 >UniRef50_A8F5Q6 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thermotoga lettingae TMO RepID=A8F5Q6_THELT Length = 135 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 11/144 (7%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVV-PCDEPL 59 M +E V + ++ + + C C + C G + V L Sbjct: 1 MARETMVVTQVKESTVILEKERTSMCGKCPANMFC-------TGESQKIRLEVQKAGFDL 53 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G KV + + +A+LVY P + + + + + +++ L + + Sbjct: 54 KTGDKVIVETPATGSIKTAMLVYTLPTIIF-VGSLITTISLLNEIEGLLISTAAVAAYYF 112 Query: 120 IARGYSRKFAARAEWQPIILSVAL 143 R Y KF + ++P I+ + Sbjct: 113 FLRFYDTKFRKK--FRPRIIEILR 134 >UniRef50_C8X3U0 Positive regulator of sigma E, RseC/MucC n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3U0_DESRD Length = 151 Score = 97.7 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 10/144 (6%) Query: 1 MIKEW--ATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP 58 M +E VV+ + A V +C SC C S + T+ + Sbjct: 1 MREEQTQGVVVAVEGNMATVKLPKPQACGSCGGEGSCCSGLTAS----GDVTVRATNEPG 56 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQL---LFASDVAALCGAILGGI 115 G+ V++ + + S + ++Y+ PL + L A L L +++A+ +++ Sbjct: 57 ARLGEVVDVLLVQESSSKAVSILYLFPLAAMVLGAILGSWLHPLGDPEISAVVLSLVCLG 116 Query: 116 GGFLIARGYSRKFAARAEWQPIIL 139 F + S + R E P I+ Sbjct: 117 AAFGLIGWRSSRTRDR-EIPPRII 139 >UniRef50_B0S1N4 Putative uncharacterized protein n=2 Tax=Finegoldia magna RepID=B0S1N4_FINM2 Length = 142 Score = 97.7 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 17/138 (12%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSS--CASRAGCGSRVLNKLGPQTTHTIVVPCDEP 58 M KE V+ ++ +A V K +C C+ +GC T I Sbjct: 1 MAKE-GMVIKTESTKASVLITRKGACGGEGCSKCSGC---------EHQTQVIECANYIS 50 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS-----DVAALCGAILG 113 G +V++ + S+L L+Y+ PL + + + ++A+ ++G Sbjct: 51 AKVGDRVQISGDDSSMLKYTALLYLVPLTFFLIALISSYSILENKIGNFELASFGIGLVG 110 Query: 114 GIGGFLIARGYSRKFAAR 131 + G++I + +KF + Sbjct: 111 LLIGYIIVKFIDKKFVDK 128 >UniRef50_C4ZKS2 Positive regulator of sigma E, RseC/MucC n=1 Tax=Thauera sp. MZ1T RepID=C4ZKS2_THASP Length = 155 Score = 97.7 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 4/137 (2%) Query: 2 IKEWATVVSWQNGQALVSCD-VKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 ++ A ++ +NGQA V + C C GCGS ++ + +P D Sbjct: 1 MEARARILRIENGQAWVKLSGKQGGCGRCDEPGGCGSVQISHVFGMPRDEFSIPADARFA 60 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA---SDVAALCGAILGGIGG 117 G V + I +G+ L +AL+ Y + L + A+ LL D L G + G Sbjct: 61 AGDAVVIRIPDGAPLRAALVSYGLGTLLLLVGAAFGSLLGGVQHGDAWGLAGGVAGLALA 120 Query: 118 FLIARGYSRKFAARAEW 134 +++ R SR R Sbjct: 121 WVVNRMLSRSRNWRNSL 137 >UniRef50_C1SHU9 Positive regulator of sigma E activity n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHU9_9BACT Length = 133 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 7/133 (5%) Query: 1 MIKEWATVVSWQN-GQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 ++K A V+ G A V ++C++C ++ C L T + L Sbjct: 3 LLKHKAVVLDVDEAGTATVEVARGSACAACGEKSSC------TLTDDTNIKLKFKDSANL 56 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G VE+GI + S S +VY+ PL+ + L A + + + + I I FL Sbjct: 57 KTGDVVEIGIEKNSFYKSLFVVYIVPLILMLLTAVISDSMTKNQLLTAGATISVIIIYFL 116 Query: 120 IARGYSRKFAARA 132 R ++ Sbjct: 117 YLRLKHNGQDKQS 129 >UniRef50_C3WAC7 Predicted protein n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAC7_FUSMR Length = 151 Score = 96.5 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 10/133 (7%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 + V + +V +CS C+ +G + D Sbjct: 1 MLNKGIVKKIDGNKIIVKLYKDTACSHCSGCSG---------DSKYGKDFEFTTDMKAEI 51 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQ-LLFASDVAALCGAILGGIGGFLI 120 G V I+ G ++ +A + Y+ P V + + L + LL S+ ++ + + + F + Sbjct: 52 GDTVTFEISAGKVIKAASIAYVFPAVAMIVGYFLGEKLLGLSENQSIITSFIALVLSFGV 111 Query: 121 ARGYSRKFAARAE 133 Y + + Sbjct: 112 LYFYDKLVVKKRT 124 >UniRef50_A7HN74 Positive regulator of sigma E, RseC/MucC n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HN74_FERNB Length = 150 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Query: 2 IKEWATVVSWQNGQALVS-CDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 +KE V + + ++ +A+CS+CA C + K +I P++ Sbjct: 1 MKELMQVRNVDDRYVYLTLMVNEATCSACALSGTCSVKGNEKDIKIQKKSIKSE-LLPIL 59 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 PG V + + + +L+VY PL+G L L+ SD+ + I GFL+ Sbjct: 60 PGDIVVVDLKYNEAVL-SLIVYGIPLLGFITGVLLSYLMKFSDIISFAVGIGFAGAGFLL 118 Query: 121 ARGYSRKFA 129 R + +K+ Sbjct: 119 TRLFDKKYK 127 >UniRef50_A1K5Z5 Putative sigma-E factor regulatory protein RseC n=1 Tax=Azoarcus sp. BH72 RepID=A1K5Z5_AZOSB Length = 146 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 38/83 (45%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++ A VV+ + G A V C C GC S L++ + +P D P Sbjct: 1 MRAPAEVVAVRGGSAWVKVTRTGGCGRCDEPGGCRSFSLDQAFGRRDALFRLPNDIDARP 60 Query: 62 GQKVELGIAEGSLLSSALLVYMS 84 G +V++ IAEG+ L +AL Y Sbjct: 61 GDRVDVLIAEGAPLRAALRSYGL 83 >UniRef50_B0VG53 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG53_9BACT Length = 136 Score = 92.7 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 8/133 (6%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 I++ V + +V + C+SC + C + D PL Sbjct: 6 IEDSGIVKKVEGNSVIVEIERGGGCNSCKMQGFC-------FKKNEPAEFEIVTDIPLQV 58 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 +V+L I+ +LL++ PL+ LFL + L F +++ ++ F I Sbjct: 59 NDRVQLDISPLGRTLVSLLIFGVPLLFLFLGFLIASLWF-TEIVSILIGFTAMALSFRII 117 Query: 122 RGYSRKFAARAEW 134 R K+ R + Sbjct: 118 RFIDTKYGKRLKI 130 >UniRef50_Q5P0C6 Putative uncharacterized protein rseC n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P0C6_AZOSE Length = 140 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 40/117 (34%), Gaps = 3/117 (2%) Query: 21 DVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALL 80 D C C GC S L +P G V L I + + L ALL Sbjct: 5 DRPGGCGRCDEPGGCRSTGLAYALKAPDKVFRLPNRIGAEAGDAVRLRIDDAAPLRGALL 64 Query: 81 VYMSPLVGLFLIASLFQLLFA---SDVAALCGAILGGIGGFLIARGYSRKFAARAEW 134 Y +V L A+L L A D+ AL G + G + R R R + Sbjct: 65 GYGLGVVLLIAGAALGTGLAAEGQGDLFALTGGLGGLAAAVGLNRFVLRSSRLREAF 121 >UniRef50_C7RHI1 Positive regulator of sigma E, RseC/MucC n=1 Tax=Anaerococcus prevotii DSM 20548 RepID=C7RHI1_ANAPD Length = 138 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 47/141 (33%), Gaps = 13/141 (9%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +++ V+ G V +C +CA++ C + T I + E L Sbjct: 4 VRKEGIVIDNNKGNLKVQIFRNGACGACAAKGSC--------AEKKTTEIELFSYEDLKR 55 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS-----DVAALCGAILGGIG 116 G V + + + VY+ P+V + + A + + + ++ L + Sbjct: 56 GDHVIIEGSSSEVSKLTATVYIVPVVMMLVGALIPNIFLKNTSMDINLLTLISVAIFFAI 115 Query: 117 GFLIARGYSRKFAARAEWQPI 137 + + + R + Sbjct: 116 SIIFMKKLDKNVKNRNMMRVR 136 >UniRef50_Q8AA49 Positive regulator of sigma(E) n=29 Tax=Bacteroides RepID=Q8AA49_BACTN Length = 141 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 8/136 (5%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVP--CDEPL 59 IK V + Q V ++C++C+++ C S I + Sbjct: 6 IKHLGIVENIQGSHLSVRIVQTSACAACSAKGHCSSA------DSKDKIIDITDVTAASY 59 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G++V + + + L ++ P V L + + L +++ A ++ I + Sbjct: 60 QVGERVMVIGETSMGMMAVTLAFIIPFVLLIVSLFAWMALIGNELYAALLSLAVLIPYYF 119 Query: 120 IARGYSRKFAARAEWQ 135 + + + Sbjct: 120 VLWLNKTRMKQHFSFT 135 >UniRef50_D1PFH5 Positive regulator of sigma(E), RseC/MucC superfamily n=1 Tax=Prevotella copri DSM 18205 RepID=D1PFH5_9BACT Length = 137 Score = 88.8 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 8/135 (5%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP--L 59 IK V S + G + ++CS+C A C I V E Sbjct: 5 IKHSGIVESVEEGCVCIRIVQSSACSACKVAAHC------TASESKEKMIEVSTSEASLY 58 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G V + ++ Y+ PL+ + + S+ AA A+ I ++ Sbjct: 59 HKGDSVVVTADSAVGFRASFYGYLLPLILMVIALVGVLKATHSEGAAALSALGILIPYYV 118 Query: 120 IARGYSRKFAARAEW 134 + + K + + Sbjct: 119 VLYLFRNKLKNKLSF 133 >UniRef50_Q0F133 Positive regulator for alginate biosynthesis MucC n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F133_9PROT Length = 158 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +++ +VV+ + Q LV ++C CA ++ C + + + V Sbjct: 1 MEQQVSVVAIEGDQVLVQGRRASACGKCAGQSSCSTMGSW---VERVAELRVQNTLHARV 57 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVA 105 G +V L + + LL + +Y P++ + +L + L Sbjct: 58 GDQVLLDVPDSLLLKVSFQLYALPMLAFVFVGALIRALAVHMGW 101 >UniRef50_C0QX76 Putative positive regulator of sigma E, RseC/MucC n=3 Tax=Brachyspira RepID=C0QX76_BRAHW Length = 140 Score = 87.7 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 16/142 (11%) Query: 1 MIKEWATVVS-WQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 M +E+A V+ + N A V ASC C C S + + Sbjct: 1 MKREFALVLETYDNNVAKVELQRSASCDGCT---ICNSG--------KPVVLRAFNNINA 49 Query: 60 VPGQKVELGIAEGSLLSSA-LLVYMSPLVGLFLIASLFQLLF-ASDVAALCGAILGGIGG 117 G V + + E L VY+ PL+ L + + + S++ G I I Sbjct: 50 NKGDSVVIEVEE--LKRGTNFFVYVIPLICLIAGYFIGEYISKLSNIEHNLGPIFAFIVF 107 Query: 118 FLIARGYSRKFAARAEWQPIIL 139 F+ RK + I+ Sbjct: 108 FIYVILGLRKLKKDNKIIANII 129 >UniRef50_C8WYR6 Positive regulator of sigma E, RseC/MucC n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WYR6_DESRD Length = 125 Score = 87.3 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 4/114 (3%) Query: 45 PQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQ---LLFA 101 G +V++ + ++Y PL+ L A + L + Sbjct: 9 GTQKMAFSAHDAFQAQVGDEVDVAFEATGRKLAMAVLYGVPLLAFLLGAIIGNELALFGS 68 Query: 102 SDVAALCGAILGGIGGFLIARGYSR-KFAARAEWQPIILSVALPPGLVRFETSS 154 +D++ + ++ + F+ R YSR + + AE++P+++ P + + Sbjct: 69 ADLSGVVLSLTATLAAFIGIRWYSRNRLESDAEYRPVVIERYPSPPKTTEDEAP 122 >UniRef50_C0QLI1 SigE n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLI1_DESAH Length = 110 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 9/112 (8%) Query: 49 HTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFA-----SD 103 + V G +V +G LL + ++Y+ P++ L A+ + L Sbjct: 3 MIVQVNNTINAKKGDRVVIGFKTAPLLKMSFMLYVFPIILLIAGAATGETLAPRFEMDPS 62 Query: 104 VAALCGAILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSE 155 + ++ I F+I R + + E++P ++ + R + + Sbjct: 63 MTSVLAGIFSFALAFVIIRKTGDRVSKNREFKPFLVRI----DRTRTIETPQ 110 >UniRef50_B7VK82 Sigma-E factor regulatory protein RseC n=17 Tax=Vibrionales RepID=B7VK82_VIBSL Length = 156 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Query: 1 MIKEWATVVSWQNG----QALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCD 56 M+ ATV S + +SC+ + SCSSC+S+ CG+ ++ K + + Sbjct: 1 MMTALATVSSVEQKGKQYFVQLSCEQQTSCSSCSSQKSCGTGIVTKAVGNKSLFWQLKTQ 60 Query: 57 EPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASL-----FQLLFASDVAALCGAI 111 + GQ VE+G E SLL SA +VY+ PL L + A LL + + A Sbjct: 61 SLVKAGQIVEIGFPEKSLLQSAAIVYLIPLFMLMVGAGFGQLLLQPLLQGGEGIVILTAA 120 Query: 112 LGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGL 147 L GG +A+ ++ +++ + +++ + + Sbjct: 121 LFTAGGIGLAKRLAKPMEDKSKQEVVLIRILGKSLI 156 >UniRef50_B3QTB7 Positive regulator of sigma E, RseC/MucC n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTB7_CHLT3 Length = 132 Score = 86.1 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 6/125 (4%) Query: 5 WATVVSWQNGQALVS--CDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPG 62 V+ + + + CD K + + CG+ K + I+ G Sbjct: 2 KGRVLKVIDDKVELRLFCDAKKA----SMDGHCGACQALKTENNNSDIIIAQNTINAKIG 57 Query: 63 QKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIAR 122 +VELG+ E + L SA ++ M PL + + L S A++ +L + + Sbjct: 58 DEVELGLKEHAELKSATILLMVPLAIFIVALGVANGLHLSVWASVLIGVLTLGITYASVK 117 Query: 123 GYSRK 127 + Sbjct: 118 LIYKN 122 >UniRef50_A8SN65 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SN65_9FIRM Length = 141 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 15/135 (11%) Query: 2 IKEWATVVSW-QNGQALVSCDVKASC-SSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 +++ + + V + C +C + GC P T IV+ + Sbjct: 1 MEQVGYITKILPEDKCKVLISRISGCKGTCKTCGGC---------PTPTMHIVMKKTLDV 51 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS----DVAALCGAILGGI 115 G V++G+ +L ++ +Y P++ L L + F + D+ I Sbjct: 52 SVGDYVKIGVDSSVVLKYSIFLYGFPILMFILSILLINIAFPNLKGIDLIGFVVGIFTMF 111 Query: 116 GGFLIARGYSRKFAA 130 FLI + K+A Sbjct: 112 LAFLIIKFVDNKYAH 126 >UniRef50_Q47FX5 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Dechloromonas aromatica RCB RepID=Q47FX5_DECAR Length = 155 Score = 85.4 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 3/124 (2%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 MI+ W V NG+A V + A G V T+ +P + L Sbjct: 5 MIEHWGMVRRIDNGRATVVVETTAC---GICGHGGHCGVGKSADGGLATTLDLPATDGLK 61 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G V +G+ E L +ALL Y+ P++ + + D A GA G + L+ Sbjct: 62 EGDFVNVGLPESGLSLAALLGYLFPVLATLVGTLAGVMTGGGDSAMALGAAAGFVASLLV 121 Query: 121 ARGY 124 AR Sbjct: 122 ARIL 125 >UniRef50_C2CFQ3 Putative uncharacterized protein n=2 Tax=Anaerococcus RepID=C2CFQ3_9FIRM Length = 138 Score = 84.6 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 13/125 (10%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 +++ V+ NG V +C +CA+R C + T I V E + Sbjct: 4 VRKEGIVLENDNGNLTVQIFRNGACGACAARGTC--------AEKKTTEIQVFSYEDIKK 55 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF-----ASDVAALCGAILGGIG 116 G KV + + + VY+ P+V + + A + + S++ L ++ Sbjct: 56 GDKVIIEGSSSEVTKLTAFVYIFPVVMMLVGAIIPNVFLKNTGMDSNLLTLIFVLIFLTI 115 Query: 117 GFLIA 121 Sbjct: 116 SVFFI 120 >UniRef50_C7RTN3 Positive regulator of sigma E, RseC/MucC n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RTN3_9PROT Length = 138 Score = 84.6 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 2/138 (1%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M W TV + +GQA + D C C GCG L L T T+ V E V Sbjct: 1 MNDAWGTVTAVDDGQATIRMD-DGGCGRCRESGGCGGNNLGHLLCATPRTLRVANPERCV 59 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 GQ+V +G+ +GSL SSAL Y PL+GLF+ A + A ++ A+ G++ G +GG+ Sbjct: 60 VGQRVRVGVVDGSLGSSALHAYAVPLLGLFVGALGGSAV-AGEIGAIGGSLGGLLGGWWG 118 Query: 121 ARGYSRKFAARAEWQPII 138 R + ++P I Sbjct: 119 LRRAHLRSRDDPRFRPSI 136 >UniRef50_A6L9C9 Putative uncharacterized protein n=6 Tax=Bacteroidales RepID=A6L9C9_PARD8 Length = 138 Score = 83.8 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 7/135 (5%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP-LV 60 I V V +++CS C +++ C + I VP Sbjct: 5 INHTGFVEKIDGDTVFVRITQQSACSGCHAQSMC------SASEKKDKIIEVPDRSGRFH 58 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 + V + L + LL ++ PLV + + L + + + + + I Sbjct: 59 VNEVVIICGQNSMGLQAVLLAFVIPLVIVVGAIVIGTNLQWDETTSGLTGLSLLLPYYCI 118 Query: 121 ARGYSRKFAARAEWQ 135 K R + Sbjct: 119 LYLMRDKLKRRFIFT 133 >UniRef50_A5TTG9 Putative uncharacterized protein n=13 Tax=Fusobacterium RepID=A5TTG9_FUSNP Length = 151 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 9/131 (6%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 + + V + + NK+G ++ + Sbjct: 1 MVNKGIITKINGDTVAVRLYKSS-----SCSHCSCCSETNKMGSN----FEFKINQKVEL 51 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G V L I+E ++ +A + Y+ P + + L + L S++ ++ G+ LG GF+ Sbjct: 52 GDLVTLEISERDVVKAAFIAYIFPPIFMILGYIVADHLGFSEMKSIIGSFLGLGLGFIFL 111 Query: 122 RGYSRKFAARA 132 Y R FA + Sbjct: 112 AIYDRFFAKKT 122 >UniRef50_C0QGD3 RseC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QGD3_DESAH Length = 152 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 12/147 (8%) Query: 5 WATVVSWQ-NGQALVSCDVKASCSSC-ASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPG 62 V + + G A V + K C C ++ C S +L V G Sbjct: 5 IGIVKATEPGGYAQVMTERKNVCGECYHNKIVCYSCLL-----NPKVIGRVANPVGARVG 59 Query: 63 QKVELGIAEGSLLSSALLVYMSPLVGLFLIAS----LFQLLFASDVAALCG-AILGGIGG 117 V++ I+ L ++A + Y+ P+ L L + + L S+ G + G G Sbjct: 60 DTVKIHISAQKLYTAAGMFYLLPVFTLLLGILLGIYVSETLGVSETTTAIGCSFAGLAVG 119 Query: 118 FLIARGYSRKFAARAEWQPIILSVALP 144 L R +P+I S+ P Sbjct: 120 ILFVTVLGRTTKISKMLEPVISSIVRP 146 >UniRef50_C7RQJ9 Positive regulator of sigma E, RseC/MucC n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RQJ9_9PROT Length = 145 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 10/131 (7%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++ VV + A V V +SC C +RA CGS ++ + V Sbjct: 6 LEARGRVVDVRGDVAEVRIAVASSCHGCRARAVCGSGA--------ERSVRITAPANAVV 57 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIA 121 G V L + + + + Y+ P V L L A+L FA D AA GA G G + Sbjct: 58 GDPVVLKLEQTNFTLGMTIGYLLPAVTLLLGAALLS--FAGDAAAALGAASGLTTGLFLV 115 Query: 122 RGYSRKFAARA 132 R R+ A Sbjct: 116 RLLHRRLFADR 126 >UniRef50_A5EW01 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EW01_DICNV Length = 154 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 3/127 (2%) Query: 7 TVVSWQNGQALVSCDVKAS-CSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKV 65 +++ ++ + + C C CG + + G ++ +P G Sbjct: 10 KIIAQNEHYLTINMLGENAQCLHCTQNCACGKQEMWFTGAIFPASLTLPRQPETSWGDYG 69 Query: 66 ELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYS 125 L I+ L A+ Y PL F++ + ++ AIL G L+++ + Sbjct: 70 MLCISRRILSLLAIYTYGLPLFLFFVVLFMGT--PFAEYVTFFAAILSSAGAVLLSKNHR 127 Query: 126 RKFAARA 132 + R Sbjct: 128 QCLLQRH 134 >UniRef50_A1K2X1 Hypothetical sigma-E factor regulatory protein n=1 Tax=Azoarcus sp. BH72 RepID=A1K2X1_AZOSB Length = 135 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 12/137 (8%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+ VV+ ++ Q +V + ++C SC + CGS T +V+ Sbjct: 1 MMSRSGRVVAVKDDQLVVRFEGASACGSCRANKVCGSGS--------TTDLVLDGGCGSR 52 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G +V++ + G+ + + Y+ P+ G ++ D+ + G G + Sbjct: 53 VGDQVDVDVDAGTAFRALAVAYLLPVAGFLAGMAVASAGGLGDLGVAGISFAGMGLGLIA 112 Query: 121 ARGYSRKFAARAEWQPI 137 SR+ QP+ Sbjct: 113 ----SRRLGRHPSLQPV 125 >UniRef50_A4WXF8 Ferredoxin n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WXF8_RHOS5 Length = 164 Score = 78.8 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 43/105 (40%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++E V++ + ++ D A CS CA R CG+ L + P + Sbjct: 14 LRERLKVLAVAGDRLELAADRAAGCSCCAMRRTCGAAELAAAARPERIEVARPPGLIVAQ 73 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAA 106 G +VE+ + L+ A L Y+ P + + A L SD+ Sbjct: 74 GDEVEVTLPASRFLTVAGLAYLLPTLAVVGTAGAGMALQLSDLWV 118 >UniRef50_Q52718 Nitrogen fixation protein rnfF n=8 Tax=Rhodobacteraceae RepID=RNFF_RHOCA Length = 523 Score = 78.0 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 57/118 (48%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++E VV+ + +V+ D ++C++CA GCG+R L + TI P + P Sbjct: 16 LRERLRVVAVRGESLVVAADRASACAACAEAKGCGTRALMSMHRTDLMTIARPAGLIVAP 75 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G +VE+ ++ +LL+ A L Y+ P + + +L SD A + + FL Sbjct: 76 GDEVEVAMSGNNLLAGAGLAYLLPALAFVVALALASGAGLSDGGAALVGGVVLMFSFL 133 >UniRef50_A4SEA5 Putative uncharacterized protein n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SEA5_PROVI Length = 143 Score = 76.5 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 19/151 (12%) Query: 6 ATVVSWQ-NGQALV------SCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP 58 ATVVS + G+A + C C + G G T++ Sbjct: 3 ATVVSTKVKGKAELVILCEDEALKGPHCGFCTAARG-------SKGKAPKETVLARNTCG 55 Query: 59 LVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGF 118 G +V++ +A + L +AL++++ P++ L L + ++ I F Sbjct: 56 AKRGDRVQVSLAGHAELKAALILFIIPMLIFMSALILTSSLQLPLWQSFGVSLASLIITF 115 Query: 119 LIARGYSRKFAARAEWQPIILSVALPPGLVR 149 L+ + + + +I VA P +R Sbjct: 116 LMIKAG---LGEKTYY--VIDQVAPQPKPLR 141 >UniRef50_C0WDT2 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDT2_9FIRM Length = 141 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 23/140 (16%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M + V + +A V + + + Sbjct: 1 MERYIGIVTAVSGQRAKVRIER------------------GLKKGEKPRILDCWNTCEAK 42 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL-----FASDVAALCGAILGGI 115 G VE+ +V PL+ L A + + F V GAI+ G+ Sbjct: 43 KGTYVEVEEQTLGERQGKWIVRGIPLLTLLAGAIFGRAVSRYLPFDLGVTMFIGAIVWGL 102 Query: 116 GGFLIARGYSRKFAARAEWQ 135 GF AR + R +R Q Sbjct: 103 LGFQYARTFKRDVTSRRGKQ 122 >UniRef50_D2RM84 Putative uncharacterized protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM84_ACIFE Length = 145 Score = 71.9 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 42/134 (31%), Gaps = 24/134 (17%) Query: 5 WATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQK 64 V++ +A V + + Q + G + Sbjct: 8 VGKVIAVSKQRAKVKIEQRPG-------------------EQRPKMLDCWNACEAKRGTR 48 Query: 65 VELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLL---FASDVA--ALCGAILGGIGGFL 119 V +G + ++VY P++ A+ + L F++ V + ++ G + Sbjct: 49 VIVGKQSLDEKKAQMIVYGIPVLTAVAGAAFGRALAHFFSAPVWQVVVLSTLVWLALGLV 108 Query: 120 IARGYSRKFAARAE 133 AR + + + E Sbjct: 109 YARNFKKSVRTKVE 122 >UniRef50_A1WTS2 Positive regulator of sigma(E), RseC/MucC n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTS2_HALHL Length = 148 Score = 71.9 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 3/133 (2%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 ++ A V+ + QA V D +C +C +R CG+++L++ + V Sbjct: 5 LEREAVVIETRGDQARVHADRPTACGACKARGACGAQLLDRHRGARG--VWVRNAIGARE 62 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASD-VAALCGAILGGIGGFLI 120 G+ V + + G+LL AL VY+ PL GL A L + + A +G + G L Sbjct: 63 GEAVVVSVPTGALLGGALAVYLLPLAGLLGGALLADAGLGAGTPGTVASAAVGLVAGLLG 122 Query: 121 ARGYSRKFAARAE 133 AR ++ + Sbjct: 123 ARSLLQRRESATR 135 >UniRef50_B4S8E6 Positive regulator of sigma E, RseC/MucC n=2 Tax=Chlorobiaceae RepID=B4S8E6_PROA2 Length = 131 Score = 70.7 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 5/103 (4%) Query: 6 ATVVSWQNGQALVSCDVKASCSSCASRA-GCGSRVLNKLGPQTTHTIVVPCDEPLVPGQK 64 A V+ +A + CS +S + CG+ + + Q T++ G Sbjct: 3 AKVIKTYAEKADIQFI----CSDSSSESVHCGACSMGQTPSQNPETVLAENPVGAKTGDI 58 Query: 65 VELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAAL 107 VE G+ E + +A L+++ PLV + + + + Sbjct: 59 VEYGLKEHGEVKAATLLFIVPLVTFMIALGITGSMGFEIWQSF 101 >UniRef50_Q5P540 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P540_AZOSE Length = 176 Score = 68.0 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 10/154 (6%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVL-----NKLGPQTTHTIVVPC 55 +++ A VV A + + A C SCA+ CGS + P Sbjct: 16 LLEGTARVVRITGAVAWLEPEPSAGCGSCAAARSCGSATFALASGAGTFSRRMAARRFPV 75 Query: 56 DEPL-----VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGA 110 D G +V +G+ E +L ++AL Y PL + + + +SDVA Sbjct: 76 DTGADGPCLEVGDRVVVGVGEDALATAALTAYALPLAIMLAAGATAEFAASSDVATFGAM 135 Query: 111 ILGGIGGFLIARGYSRKFAARAEWQPIILSVALP 144 G + G IAR + + AA P L A Sbjct: 136 AGGLLLGLAIARRLASRLAATGSTVPRFLRHAGR 169 >UniRef50_D1PYB9 Putative uncharacterized protein n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PYB9_9BACT Length = 136 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 8/135 (5%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPC--DEPL 59 I + ++G +V + C+SC C T + + Sbjct: 5 ITHPGIIEQIEDGHLIVRIVQGSGCASCKMAGHC------HASESTEKLVDIYNVDTTKY 58 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G+ + + + + + PL+ L + A++ A + I + Sbjct: 59 HVGENIVITADMKTGYRAVAWGFGVPLLILTATIFGIWAVTANEAWAALAGLAALIPYYA 118 Query: 120 IARGYSRKFAARAEW 134 KF + Sbjct: 119 FLYLIRNKFRDEFSF 133 >UniRef50_Q3SH44 Putative positive regulator of sigma E activity n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SH44_THIDA Length = 144 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 8/147 (5%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLV 60 M+++ A +V V + S GC SR + +L +V CD L Sbjct: 1 MLEQTAEIVKTAPEGVWVRAV-EPSGCGSCGGQGCSSRRIAELFQCKPRQFLVDCDLSLS 59 Query: 61 PGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 PG +V +GIA G++L SA+ Y L + A L Q L D AA+ G +LG G L Sbjct: 60 PGDRVIVGIARGTVLRSAIRAYGLALALMLGGALLGQALHPGDAAAVVGLVLGAALGGLF 119 Query: 121 ARGYSRKFAARAEWQPIILSVALPPGL 147 R +P +L P L Sbjct: 120 VR-------NARAPRPAVLRREPSPLL 139 >UniRef50_Q3B3R6 Putative uncharacterized protein n=1 Tax=Chlorobium luteolum DSM 273 RepID=Q3B3R6_PELLD Length = 140 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 18/148 (12%) Query: 6 ATVVSWQNGQALV------SCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPL 59 V + + G A + C C++ G G TI+ D Sbjct: 3 GRVHAVRKGLAEIMVVCEDEALKGPHCGFCSASGG-------GAGKAKNETILARNDAGA 55 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G VEL I E + L +AL++++ PL L + L A G L Sbjct: 56 TAGTIVELSIGEHAELKAALILFVIPLSTFILALIAAAAVQLP----LLQAAGTGGAVLL 111 Query: 120 IARGYSRKFAARAEWQPIILSVALPPGL 147 + + + ++ V P Sbjct: 112 LTLVVLKAVLRNKTYH-RVVRVVPKPLK 138 >UniRef50_B6W855 Putative uncharacterized protein n=2 Tax=Anaerococcus RepID=B6W855_9FIRM Length = 137 Score = 61.9 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 14/136 (10%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 I + VV NG V + +GCGS +E L P Sbjct: 4 ISKKGIVVENLNGNVKVMIQKE---------SGCGSCSSCGGCEIKPSYYTAFTNENLNP 54 Query: 62 GQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF-----ASDVAALCGAILGGIG 116 G V L ++ + Y+ P+ + A L +F +++ + + + Sbjct: 55 GDFVYLDSDIKTVNRLSYFTYLFPVFMMITGAVLANTIFKNTIQDNNLLTVLFIFIFLVL 114 Query: 117 GFLIARGYSRKFAARA 132 L+ R + + + Sbjct: 115 SILVLRFMDKGYENKE 130 >UniRef50_A4AT37 Ferredoxin n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4AT37_9FLAO Length = 151 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 10/141 (7%) Query: 1 MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPC-DEPL 59 M++ + N + V+ +C C ++A CG I V + L Sbjct: 16 MVEHDGVISKISNNKITVALKGNINCDGCKAKAVCG------AADSNGKEIEVDNVSQQL 69 Query: 60 VPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 + V + + + + + L Y+ P + L L L F + A A+ + +L Sbjct: 70 DLNEDVTVLLKKNLAIKAVFLAYILPFIFLLLTLLLASNYF-EEWFAGLLALAILLPYYL 128 Query: 120 IARGYSRKFAARAEWQPIILS 140 I Y+ + + + E++ IL Sbjct: 129 II--YALRGSFKKEFKVSILK 147 >UniRef50_B3EIX5 Positive regulator of sigma(E) RseC/MucC n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EIX5_CHLL2 Length = 130 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 6/106 (5%) Query: 6 ATVVSWQNGQALVSCDVKASCSSCASRA-GCGSRVLNKLGPQTTHTIVVPCDEPLVPGQK 64 A V+ NG+A +S C+ A + CG+ + G Sbjct: 3 AEVLKSHNGKAEISIV----CTDDAEKGLHCGACNAGNRLKGRETVL-ADNAIGAAVGDF 57 Query: 65 VELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAALCGA 110 V + I E L +AL++++ PL+ ++ + + Sbjct: 58 VAVAIKEHGELKAALMLFIIPLLSFLSALAVANACTLNLWLSFLCG 103 >UniRef50_B2RLD4 Putative uncharacterized protein n=2 Tax=Porphyromonas gingivalis RepID=B2RLD4_PORG3 Length = 127 Score = 58.4 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 8/126 (6%) Query: 12 QNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP-LVPGQKVELGIA 70 + + V K++C+ C + C S I V P + G +V L Sbjct: 2 EADKITVCVQQKSACAGCHAAGYCSS------TDCKDRYITVMGPAPDIREGDRVLLEGH 55 Query: 71 EGSLLSSALLVYMSP-LVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFA 129 + +L ++ P ++ L ++ +L + + ++ +LI R ++ K + Sbjct: 56 SAMGRLAVVLSFIVPLILLLLMLVLTISILRLDEGMSTLISLGALGVYYLILRLFNGKLS 115 Query: 130 ARAEWQ 135 R + Sbjct: 116 RRLVFT 121 >UniRef50_C3JD66 Positive regulator of sigma(E), RseC/MucC family n=2 Tax=Bacteria RepID=C3JD66_9PORP Length = 142 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 8/135 (5%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEP-LV 60 ++ A V + + +V+ ++CS C + C I + Sbjct: 6 LEHRAVVSAVYADRVVVTITQSSACSGCHAAKAC------TAADHKERPITIYRPMGEYK 59 Query: 61 PGQKVELGIAEGSLLSSALLVY-MSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFL 119 G+ V L ++ ++ + + ++ L + +L SD+ A + G +L Sbjct: 60 IGEPVLLKGRYAMGNTAVVISFVVPLVLLLVVALLAVHVLHLSDLYAALCTLGGVGVYYL 119 Query: 120 IARGYSRKFAARAEW 134 I + + + + + Sbjct: 120 ILSFFRKSLSKKFVF 134 >UniRef50_Q1K1M4 Putative uncharacterized protein n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K1M4_DESAC Length = 181 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 38/121 (31%), Gaps = 5/121 (4%) Query: 2 IKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVP 61 + E V+ + + V ++ S + G ++ Sbjct: 22 LSETGVVIELREKRLAVVAREQSD----GCSGCGASGGCCQSGGNGQRRLLADNQPYARV 77 Query: 62 GQKVELGIAEGSLLS-SALLVYMSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLI 120 G V + I + L+ S +Y+ + L L ++ + + + A+L + G Sbjct: 78 GDTVRVEIETTAGLADSQNFLYIIAFIMLALGLAVGYFIASLLPVGIPAALLALMIGGAF 137 Query: 121 A 121 Sbjct: 138 M 138 >UniRef50_C2MBZ9 Putative uncharacterized protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MBZ9_9PORP Length = 106 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 9/111 (8%) Query: 27 SSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPL 86 C + ++L T +P D L G +V L + + + LL + P Sbjct: 3 GHCHASE-------SRLETITLDRSQLPSDIAL--GDQVSLEMRSSLGMRAVLLTMVVPT 53 Query: 87 VGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPI 137 + + + L L +A + A+ L+ +F + Sbjct: 54 LLIIAVTILLSYLEVGTLAQILIALGVAAAYMLLLWLLRDRFERTFTFTVR 104 >UniRef50_Q67R13 Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67R13_SYMTH Length = 132 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 7/83 (8%) Query: 26 CSSCASRAGCGSRVLNKLGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSP 85 CS+C+ R G S + ++V PL PG+ + + S + L Y+ P Sbjct: 8 CSACSHRCGAHSSGGGRY-------LLVESSTPLKPGRAIVVEAPLPSPARAVALAYLLP 60 Query: 86 LVGLFLIASLFQLLFASDVAALC 108 L G + F + Sbjct: 61 LAGFMAGLFIGNAAFDGAPLPVL 83 >UniRef50_C6Q1N1 Putative uncharacterized protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q1N1_9CLOT Length = 104 Score = 45.3 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 73 SLLSSALLVYMSPLVGLFLIASLFQLLFASD-----VAALCGAILGGIGGFLIARGYSRK 127 ++L +A +++M P++ +FL L + S + G ++G I +I + + + Sbjct: 30 NMLLAAFMMFMLPIMLVFLGVFLGGYIGKSMETSIRTFQIGGGVVGFILAVIIIKLFDKS 89 Query: 128 FAARAE 133 + Sbjct: 90 AVIDKD 95 >UniRef50_Q73MH4 Putative uncharacterized protein n=1 Tax=Treponema denticola RepID=Q73MH4_TREDE Length = 153 Score = 41.4 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 5/115 (4%) Query: 28 SCASRAGCGSRVLNK-----LGPQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVY 82 SCA+ GCG NK T + L G V + I E L Sbjct: 36 SCATCGGCGFAGKNKERGLLAVSGNKITALNNSGRNLKKGDFVIVEINENQTRIQTLSSV 95 Query: 83 MSPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPI 137 + P++ F+ + L+F ++ AA+ G LG + G +A K RA Q I Sbjct: 96 IIPILLAFVFSLSSYLIFYTEKAAVGGLFLGLLTGTALAFLLKNKMGDRALPQVI 150 >UniRef50_C9P1L6 Putative uncharacterized protein n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P1L6_VIBME Length = 58 Score = 40.3 bits (93), Expect = 0.023, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%) Query: 93 ASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPIILSVALPP 145 LL AS+ + A+L G +IA+ +S + + Q I+L V P Sbjct: 4 LWFAPLLGASEGIVIACALLFMGLGVVIAKYFSTQLENDSSQQVILLRVLGEP 56 >UniRef50_A5N0Y3 Putative uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=A5N0Y3_CLOK5 Length = 87 Score = 40.3 bits (93), Expect = 0.023, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 70 AEGSLLSSALLVYMSPLVGLFLIASLFQLLFASDVAA-----LCGAILGGIGGFLIARGY 124 ++L +A ++++ P++ +FL L L + + G I+ + + + + Sbjct: 10 KSTNMLIAAFMLFIFPIMLVFLGVFLGGYLGKLMEGSIRTYEIIGGIIALVLAVVFVKLF 69 Query: 125 SRKFAARAE 133 + E Sbjct: 70 DKSTVVDKE 78 >UniRef50_D0LYM0 SNARE associated Golgi protein-like protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYM0_HALO1 Length = 224 Score = 39.9 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 8/79 (10%) Query: 74 LLSSALLVYMSP-----LVGLFLIASLFQL---LFASDVAALCGAILGGIGGFLIARGYS 125 L +A++ Y+ P + LF + + A + G+++G + F + + Sbjct: 24 LALAAMIEYLVPPFPGDTITLFGAVLITSQEWSFWGVFGAVMAGSVVGSMAAFYAGKWWR 83 Query: 126 RKFAARAEWQPIILSVALP 144 R+ A + P + + Sbjct: 84 RRSAEKHRPHPKLERLVGK 102 >UniRef50_B3T2S0 Putative amino acid permease n=3 Tax=environmental samples RepID=B3T2S0_9ARCH Length = 787 Score = 39.5 bits (91), Expect = 0.037, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%) Query: 80 LVYM--------SPLVGLFLIASLFQLLFASDVAALCGAILGGIGGFLIARGYSRKFAAR 131 LVY P++G +++ L L S + A++ GFLI R Y+ K Sbjct: 399 LVYGFKTPFFPAIPIIGFAVVSILAVYLLFSQPLSWVIALVWIGAGFLIYRFYTSKREKH 458 Query: 132 A 132 A Sbjct: 459 A 459 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.148 0.424 Lambda K H 0.267 0.0459 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 864,643,917 Number of Sequences: 3077464 Number of extensions: 27216595 Number of successful extensions: 154865 Number of sequences better than 1.0e-01: 162 Number of HSP's better than 0.1 without gapping: 342 Number of HSP's successfully gapped in prelim test: 63 Number of HSP's that attempted gapping in prelim test: 154141 Number of HSP's gapped (non-prelim): 413 length of query: 159 length of database: 1,040,396,356 effective HSP length: 118 effective length of query: 41 effective length of database: 677,255,604 effective search space: 27767479764 effective search space used: 27767479764 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 88 (38.3 bits)