BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (1170 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P08956 Type I restriction enzyme EcoKI R protein n=52 T... 2428 0.0 UniRef50_A4VH90 Type I restriction-modification system, R subuni... 859 0.0 UniRef50_Q2P0A6 Type I restriction-modification system R subunit... 833 0.0 UniRef50_B5W466 Type III restriction protein res subunit n=2 Tax... 805 0.0 UniRef50_B2J091 Type III restriction enzyme, res subunit n=1 Tax... 788 0.0 UniRef50_Q7UK96 Type I restriction enzyme EcoKI R protein n=3 Ta... 784 0.0 UniRef50_C3MF99 Putative restriction endonuclease type I with R ... 781 0.0 UniRef50_B6R0S4 Type III restriction enzyme, res subunit family ... 771 0.0 UniRef50_A6TLK4 Type III restriction protein, res subunit n=3 Ta... 770 0.0 UniRef50_B2A6M4 Type III restriction protein res subunit n=5 Tax... 769 0.0 UniRef50_Q210K0 Type III restriction enzyme, res subunit n=4 Tax... 767 0.0 UniRef50_B0QS40 Type III restriction enzyme, res subunit n=1 Tax... 760 0.0 UniRef50_C6CZ63 Type III restriction protein res subunit n=3 Tax... 759 0.0 UniRef50_C4KDM8 Type III restriction protein res subunit n=4 Tax... 748 0.0 UniRef50_C6JN68 Type I restriction enzyme EcoKI subunit R n=4 Ta... 698 0.0 UniRef50_C7GDQ4 Type I restriction-modification system, R subuni... 687 0.0 UniRef50_C3WJB8 Type III restriction protein n=2 Tax=Fusobacteri... 662 0.0 UniRef50_Q26D94 Type I restriction-modification system, R subuni... 656 0.0 UniRef50_A8YW16 Type I restriction modification system n=1 Tax=L... 619 e-175 UniRef50_C0XBA4 Type I restriction enzyme EcoKI subunit R n=6 Ta... 617 e-174 UniRef50_A7I737 Type III restriction enzyme, res subunit n=5 Tax... 317 2e-84 UniRef50_A1BGJ2 Type III restriction enzyme, res subunit n=21 Ta... 238 1e-60 UniRef50_UPI0001B4DA31 type III restriction enzyme, res subunit ... 229 4e-58 UniRef50_Q0W4T5 Type I restriction modification system, restrict... 207 2e-51 UniRef50_C3QTD9 Type I restriction enzyme EcoKI R protein n=3 Ta... 205 7e-51 UniRef50_C6Q0A8 Type III restriction protein res subunit n=1 Tax... 205 8e-51 UniRef50_B5YGZ8 Type I site-specific deoxyribonuclease n=6 Tax=B... 203 4e-50 UniRef50_A6W081 Type III restriction protein res subunit n=3 Tax... 200 4e-49 UniRef50_C7D879 Type I restriction enzyme, R protein n=1 Tax=Tha... 199 4e-49 UniRef50_D0SUQ0 Predicted protein n=5 Tax=Moraxellaceae RepID=D0... 198 9e-49 UniRef50_A0KWT8 Type III restriction enzyme, res subunit n=7 Tax... 198 1e-48 UniRef50_UPI000050FFCE type III restriction enzyme, res subunit ... 196 6e-48 UniRef50_D1C5W5 Type III restriction protein res subunit n=1 Tax... 192 5e-47 UniRef50_C7P6A6 Type I site-specific deoxyribonuclease n=1 Tax=M... 192 8e-47 UniRef50_B9M295 Type III restriction protein res subunit n=2 Tax... 191 2e-46 UniRef50_C4LDI1 Type III restriction protein res subunit n=4 Tax... 190 2e-46 UniRef50_B7RYA9 Type III restriction enzyme, res subunit family ... 189 4e-46 UniRef50_Q21ZK0 Type III restriction enzyme, res subunit n=17 Ta... 188 9e-46 UniRef50_C0VSE4 Type I site-specific deoxyribonuclease n=2 Tax=C... 188 9e-46 UniRef50_Q0AZK4 Type I restriction-modification system R subunit... 187 1e-45 UniRef50_C6A4W6 Type III restriction enzyme, res subunit n=1 Tax... 185 1e-44 UniRef50_Q04L29 Type I restriction-modification system, R subuni... 184 1e-44 UniRef50_B4RYU7 Type I site-specific restriction-modification sy... 184 2e-44 UniRef50_D1W5U0 DEAD/DEAH box helicase n=1 Tax=Prevotella buccal... 184 2e-44 UniRef50_Q7VGA4 Putative uncharacterized protein n=1 Tax=Helicob... 183 3e-44 UniRef50_A6L7V1 Type I restriction enzyme EcoKI R protein n=11 T... 182 7e-44 UniRef50_Q0ATD1 Type III restriction enzyme, res subunit n=4 Tax... 182 7e-44 UniRef50_A2TPW6 Type I restriction enzyme, R protein n=1 Tax=Dok... 181 1e-43 UniRef50_C6LMG2 Type I restriction-modification system, R subuni... 181 1e-43 UniRef50_B0URP6 Type III restriction protein res subunit n=7 Tax... 181 1e-43 UniRef50_B5Y627 Type I restriction-modification system, R subuni... 177 2e-42 UniRef50_C8W942 Type III restriction protein res subunit n=5 Tax... 177 2e-42 UniRef50_C4XDR7 Putative uncharacterized protein n=1 Tax=Mycopla... 174 1e-41 UniRef50_Q73J29 Type I restriction-modification system, R subuni... 174 2e-41 UniRef50_D1XTB5 Type III restriction protein res subunit n=2 Tax... 174 2e-41 UniRef50_B3CDF9 Putative uncharacterized protein n=1 Tax=Bactero... 174 2e-41 UniRef50_Q112D5 Type III restriction enzyme, res subunit n=1 Tax... 172 8e-41 UniRef50_A6DQ75 Type I restriction-modification system R subunit... 171 1e-40 UniRef50_Q1GLF8 Type I restriction-modification system restricti... 171 1e-40 UniRef50_A4T8B3 Type III restriction enzyme, res subunit n=6 Tax... 170 3e-40 UniRef50_A8ZY57 Type III restriction protein res subunit n=1 Tax... 170 3e-40 UniRef50_B8CZR6 EcoEI R domain protein n=5 Tax=Firmicutes RepID=... 169 4e-40 UniRef50_C3NN84 Type III restriction protein res subunit n=1 Tax... 169 6e-40 UniRef50_Q167L8 Type I restriction enzyme subunit, putative n=11... 168 1e-39 UniRef50_C9KLJ8 Type I restriction-modification system, R subuni... 166 5e-39 UniRef50_B8ECU5 Type III restriction protein res subunit n=5 Tax... 166 5e-39 UniRef50_Q043T1 Type I site-specific restriction-modification sy... 166 8e-39 UniRef50_D2LA91 Type I site-specific deoxyribonuclease n=1 Tax=D... 164 2e-38 UniRef50_C0E6A8 Putative uncharacterized protein n=1 Tax=Coryneb... 163 4e-38 UniRef50_Q5NWL0 Type I restriction-modification system (Restrict... 163 4e-38 UniRef50_Q07736 Type I restriction enzyme EcoAI R protein n=63 T... 163 4e-38 UniRef50_B5FA21 Type I restriction-modification system, R subuni... 163 4e-38 UniRef50_B1VEN8 Type I restriction-modification system, restrict... 162 6e-38 UniRef50_C4ZF20 Type I restriction-modification system R subunit... 162 6e-38 UniRef50_B0JHV9 Type III restriction enzyme res subunit n=4 Tax=... 162 9e-38 UniRef50_UPI000196AC3A hypothetical protein CATMIT_00264 n=1 Tax... 161 1e-37 UniRef50_A5GB17 Type III restriction enzyme, res subunit n=1 Tax... 161 1e-37 UniRef50_Q47281 Type I restriction enzyme EcoEI R protein n=45 T... 161 2e-37 UniRef50_A5TW30 Type I site-specific deoxyribonuclease restricti... 160 2e-37 UniRef50_C2CJE8 Type I site-specific deoxyribonuclease n=5 Tax=F... 159 6e-37 UniRef50_C9RRX7 Type I site-specific deoxyribonuclease n=1 Tax=F... 159 8e-37 UniRef50_C2CT05 Type I site-specific deoxyribonuclease n=3 Tax=C... 159 9e-37 UniRef50_C6BRN4 Type I site-specific deoxyribonuclease n=2 Tax=P... 158 1e-36 UniRef50_Q7MPU7 Type I site-specific restriction-modification sy... 157 2e-36 UniRef50_C9MRT3 Type I restriction-modification system, R subuni... 157 3e-36 UniRef50_A5UR94 Type III restriction enzyme, res subunit n=5 Tax... 157 3e-36 UniRef50_D0KYE6 Type I site-specific deoxyribonuclease n=2 Tax=P... 156 5e-36 UniRef50_B9MGJ1 EcoEI R domain protein n=4 Tax=Proteobacteria Re... 155 7e-36 UniRef50_A8ZXE8 Type III restriction protein res subunit n=9 Tax... 154 2e-35 UniRef50_B1Y673 EcoEI R domain protein n=12 Tax=Bacteria RepID=B... 154 2e-35 UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax... 152 6e-35 UniRef50_A4FZ35 Type III restriction enzyme, res subunit n=1 Tax... 150 2e-34 UniRef50_Q4HNM6 Type I restriction-modification system, R subuni... 150 3e-34 UniRef50_B2IMB0 Type I restriction-modification system, R subuni... 150 4e-34 UniRef50_B6ALE7 Putative DEAD/DEAH box helicase n=1 Tax=Leptospi... 149 9e-34 UniRef50_A3CUH7 Type III restriction enzyme, res subunit n=3 Tax... 147 3e-33 UniRef50_B7JWD2 EcoEI R domain protein n=2 Tax=Bacteria RepID=B7... 146 5e-33 UniRef50_UPI0001BC3736 type I restriction-modification system, R... 145 1e-32 UniRef50_Q8EUU6 Type I restriction-modification system R subunit... 144 1e-32 UniRef50_B3H2F8 Type I restriction enzyme R protein n=2 Tax=Acti... 144 2e-32 UniRef50_A1SRA3 Type III restriction enzyme, res subunit n=4 Tax... 144 3e-32 UniRef50_C8PRL3 Type I restriction-modification system, R subuni... 143 3e-32 UniRef50_B5H9V0 Type III restriction enzyme n=1 Tax=Streptomyces... 138 1e-30 UniRef50_B5GJX6 Type I site-specific deoxyribonuclease protein R... 137 3e-30 UniRef50_A0Q726 Type I restriction-modification system, subunit ... 135 1e-29 UniRef50_A5KNP7 Putative uncharacterized protein n=1 Tax=Ruminoc... 134 2e-29 UniRef50_C4WKW0 Type I restriction enzyme EcoEI R protein n=2 Ta... 129 5e-28 UniRef50_C2RWF5 Type III restriction protein res subunit n=1 Tax... 126 5e-27 UniRef50_A3RQ88 Type I restriction-modification system restricti... 122 9e-26 UniRef50_B3EE95 Type III restriction protein res subunit n=4 Tax... 117 2e-24 UniRef50_C9LYN5 Type I restriction-modification system R subunit... 107 2e-21 UniRef50_C2CPV5 Restriction modification enzyme r subunit protei... 106 6e-21 UniRef50_B2AZI6 Predicted CDS Pa_3_4550 n=6 Tax=Leotiomyceta Rep... 92 1e-16 UniRef50_C9M6T4 DNA/RNA helicase n=1 Tax=Jonquetella anthropi E3... 91 4e-16 UniRef50_C6HZP0 Type III restriction enzyme, res subunit n=1 Tax... 88 3e-15 UniRef50_A5UL17 Helicase n=3 Tax=Methanobrevibacter smithii RepI... 87 5e-15 UniRef50_D2MPK0 DEAD/DEAH box helicase n=2 Tax=Firmicutes RepID=... 86 6e-15 UniRef50_A5DU02 Putative uncharacterized protein n=1 Tax=Loddero... 86 9e-15 UniRef50_B1YI12 Type III restriction protein res subunit n=1 Tax... 85 2e-14 UniRef50_P33919 Uncharacterized protein yejH n=254 Tax=Proteobac... 85 2e-14 UniRef50_A3Z7D3 Putative ATP-dependent helicase n=3 Tax=Chroococ... 85 2e-14 UniRef50_A4SC93 Type III restriction enzyme, res subunit n=1 Tax... 84 3e-14 UniRef50_Q6C2M8 YALI0F06534p n=1 Tax=Yarrowia lipolytica RepID=Q... 84 4e-14 UniRef50_B3CKZ8 Putative carboxylic ester hydrolase n=1 Tax=Prop... 84 4e-14 UniRef50_C0XQJ4 Possible helicase n=2 Tax=Corynebacterium RepID=... 83 5e-14 UniRef50_B6H0F8 Pc12g06640 protein n=12 Tax=Leotiomyceta RepID=B... 83 5e-14 UniRef50_D1BPC6 Type III restriction protein res subunit n=2 Tax... 83 7e-14 UniRef50_B0SD57 DNA or RNA helicase of superfamily II n=5 Tax=Ba... 82 2e-13 UniRef50_B0CPP8 Predicted protein n=4 Tax=Agaricomycetes RepID=B... 82 2e-13 UniRef50_C6R8F6 Type III restriction enzyme, res subunit n=5 Tax... 81 3e-13 UniRef50_Q5KCW6 DEAD box family helicase, putative n=1 Tax=Filob... 81 3e-13 UniRef50_C5DHE1 KLTH0E03630p n=2 Tax=Saccharomycetaceae RepID=C5... 80 6e-13 UniRef50_Q1QZA7 Type III restriction enzyme, res subunit n=5 Tax... 80 7e-13 UniRef50_B8I140 Type III restriction protein res subunit n=16 Ta... 79 1e-12 UniRef50_Q06683 Putative ATP-dependent helicase IRC3 n=6 Tax=Sac... 78 2e-12 UniRef50_B5IP85 Type III restriction enzyme, res subunit n=1 Tax... 77 3e-12 UniRef50_A1SJ00 Type III restriction enzyme, res subunit n=3 Tax... 77 3e-12 UniRef50_A4CPV8 Putative helicase n=1 Tax=Robiginitalea biformat... 77 6e-12 UniRef50_Q1WS72 DNA/RNA helicase, DEAD/DEAH box family n=14 Tax=... 76 8e-12 UniRef50_B1IDR5 Restriction/helicase domain protein n=19 Tax=cel... 76 9e-12 UniRef50_Q6FK44 Similar to uniprot|Q06683 Saccharomyces cerevisi... 75 1e-11 UniRef50_B5CWI1 Putative uncharacterized protein n=1 Tax=Bactero... 75 1e-11 UniRef50_D1BZV1 Type III restriction protein res subunit n=1 Tax... 75 1e-11 UniRef50_C1XZ08 DNA/RNA helicase, superfamily II n=1 Tax=Meiothe... 75 1e-11 UniRef50_A6LX80 Type III restriction protein, res subunit n=15 T... 75 2e-11 UniRef50_B9ZK35 Type III restriction protein res subunit n=1 Tax... 75 2e-11 UniRef50_B6QJS8 DEAD/DEAH box helicase, putative n=1 Tax=Penicil... 74 2e-11 UniRef50_B8HYS8 Putative uncharacterized protein n=1 Tax=Cyanoth... 74 3e-11 UniRef50_A7HHG6 Type III restriction protein res subunit n=8 Tax... 74 4e-11 UniRef50_C5DW03 ZYRO0D10802p n=1 Tax=Zygosaccharomyces rouxii Re... 74 5e-11 UniRef50_Q0AY89 DNA or RNA helicases of superfamily II-like prot... 74 5e-11 UniRef50_B0G2L1 Putative uncharacterized protein n=1 Tax=Dorea f... 73 6e-11 UniRef50_C8P3G7 Helicase n=1 Tax=Erysipelothrix rhusiopathiae AT... 73 7e-11 UniRef50_A9GJE0 Putative helicase n=1 Tax=Sorangium cellulosum '... 72 1e-10 UniRef50_D0DSQ0 Phage DEAD box family helicase n=2 Tax=Lactobaci... 72 1e-10 UniRef50_B4D2R4 Type III restriction protein res subunit n=1 Tax... 72 1e-10 UniRef50_A4XFJ4 Type III restriction enzyme, res subunit n=1 Tax... 72 1e-10 UniRef50_Q6CMW9 KLLA0E17095p n=2 Tax=cellular organisms RepID=Q6... 72 1e-10 UniRef50_A7HMW9 Type III restriction protein res subunit n=1 Tax... 72 2e-10 UniRef50_C7N5J4 DNA/RNA helicase, superfamily II n=1 Tax=Slackia... 71 2e-10 UniRef50_Q027W9 Type III restriction enzyme, res subunit n=1 Tax... 71 2e-10 UniRef50_D1N7I0 Helicase domain protein n=1 Tax=Victivallis vade... 71 2e-10 UniRef50_A4QW28 Putative uncharacterized protein n=2 Tax=Sordari... 71 2e-10 UniRef50_B8MIT3 DEAD/DEAH box helicase, putative n=1 Tax=Talarom... 71 2e-10 UniRef50_C6R1X3 Helicase n=1 Tax=Rothia mucilaginosa ATCC 25296 ... 71 3e-10 UniRef50_A1SY30 Type III restriction enzyme, res subunit n=3 Tax... 71 3e-10 UniRef50_A5KTC5 Type I site-specific deoxyribonuclease n=2 Tax=c... 70 4e-10 UniRef50_A0LI77 Type III restriction enzyme, res subunit n=6 Tax... 70 5e-10 UniRef50_C5NW00 DNA repair helicase Rad25 n=1 Tax=Gemella haemol... 70 5e-10 UniRef50_Q2NIB5 Predicted helicase n=2 Tax=Methanosphaera stadtm... 69 8e-10 UniRef50_Q6BK09 DEHA2F25828p n=5 Tax=Saccharomycetaceae RepID=Q6... 69 8e-10 UniRef50_UPI0001972F9F hypothetical protein ClM62_08351 n=1 Tax=... 69 1e-09 UniRef50_C4L054 Type III restriction protein res subunit n=70 Ta... 69 1e-09 UniRef50_B0NL99 Putative uncharacterized protein n=3 Tax=Bacteri... 69 1e-09 UniRef50_Q8YK43 All8075 protein n=1 Tax=Nostoc sp. PCC 7120 RepI... 69 1e-09 UniRef50_C7GA84 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=C... 69 1e-09 UniRef50_Q03EF5 DNA or RNA helicase of superfamily II n=1 Tax=Pe... 68 2e-09 UniRef50_C4R463 Putative uncharacterized protein n=1 Tax=Pichia ... 68 2e-09 UniRef50_Q12MF5 Type III restriction enzyme, res subunit n=21 Ta... 68 2e-09 UniRef50_C6I028 Putative helicase n=1 Tax=Leptospirillum ferrodi... 68 2e-09 UniRef50_Q6M621 Predicted HKD family nuclease n=5 Tax=Corynebact... 67 3e-09 UniRef50_C8X332 Type III restriction protein res subunit n=1 Tax... 67 4e-09 UniRef50_B1YFS4 Type III restriction protein res subunit n=1 Tax... 67 5e-09 UniRef50_C5VVF7 Type I restriction-modification system, restrict... 67 5e-09 UniRef50_Q4P241 Putative uncharacterized protein n=1 Tax=Ustilag... 67 5e-09 UniRef50_A3EQ89 Putative helicase n=1 Tax=Leptospirillum rubarum... 67 5e-09 UniRef50_Q1PKZ5 DNA repair helicase rad25 n=2 Tax=cellular organ... 67 6e-09 UniRef50_D2LJT9 Type III restriction protein res subunit n=1 Tax... 67 6e-09 UniRef50_B3RW31 Putative uncharacterized protein n=1 Tax=Trichop... 66 8e-09 UniRef50_C0GPL2 Type III restriction protein res subunit n=1 Tax... 65 1e-08 UniRef50_B1XZH6 Type III restriction protein res subunit n=2 Tax... 65 1e-08 UniRef50_A0JTK4 Type III restriction enzyme, res subunit n=17 Ta... 65 1e-08 UniRef50_C8WYC9 Type III restriction protein res subunit n=2 Tax... 65 1e-08 UniRef50_Q5FLU2 Phage related helicase n=3 Tax=Lactobacillus aci... 65 2e-08 UniRef50_C2E648 Helicase n=4 Tax=Lactobacillus RepID=C2E648_LACJO 64 3e-08 UniRef50_C2CPV6 Type I restriction-modification system, restrict... 64 3e-08 UniRef50_A4IPV6 DNA/RNA helicase n=15 Tax=Bacillaceae RepID=A4IP... 64 4e-08 UniRef50_A9UTX7 Predicted protein n=1 Tax=Monosiga brevicollis R... 64 4e-08 UniRef50_B0URL0 ATP-dependent exoDNAse (Exonuclease V) alpha sub... 64 4e-08 UniRef50_B9CN59 DNA/RNA helicase n=1 Tax=Atopobium rimae ATCC 49... 64 5e-08 UniRef50_C0VZ55 ATP-dependent helicase n=1 Tax=Actinomyces coleo... 62 2e-07 UniRef50_Q14JJ7 DNA/RNA helicase n=18 Tax=Francisella RepID=Q14J... 62 2e-07 UniRef50_Q7UED5 Putative helicase n=2 Tax=Planctomycetaceae RepI... 61 2e-07 UniRef50_Q31QB2 DEAD/DEAH box helicase-like n=2 Tax=Synechococcu... 61 3e-07 UniRef50_A4VXB4 Type I site-specific restriction-modification sy... 61 3e-07 UniRef50_A5F3B5 Helicase-related protein n=24 Tax=Gammaproteobac... 61 3e-07 UniRef50_C6E151 Type III restriction protein res subunit n=3 Tax... 61 3e-07 UniRef50_B0TQK0 Type III restriction protein res subunit n=22 Ta... 61 3e-07 UniRef50_Q759H6 ADR302Wp n=1 Tax=Eremothecium gossypii RepID=Q75... 60 4e-07 UniRef50_A5KRT5 Putative uncharacterized protein n=1 Tax=candida... 60 5e-07 UniRef50_B1BM47 Type III restriction enzyme, res subunit family ... 60 5e-07 UniRef50_C6MBL3 Type III restriction protein res subunit n=3 Tax... 60 7e-07 UniRef50_Q4A127 Type-1 restriction enzyme R protein n=77 Tax=cel... 60 7e-07 UniRef50_Q59PU6 Putative uncharacterized protein n=1 Tax=Candida... 59 1e-06 UniRef50_C0QBM3 RecQ1 n=2 Tax=Desulfobacterium autotrophicum HRM... 59 1e-06 UniRef50_B9W8D3 Putative uncharacterized protein n=4 Tax=Candida... 59 1e-06 UniRef50_Q6F1F2 DNA repair DNA/RNA helicase n=3 Tax=Entomoplasma... 59 1e-06 UniRef50_A0RVA6 Superfamily II helicase n=1 Tax=Cenarchaeum symb... 59 1e-06 UniRef50_B9ZQ48 Type III restriction protein res subunit n=1 Tax... 59 2e-06 UniRef50_D2Q5U4 DNA/RNA helicase (DEAD/DEAH box family) n=7 Tax=... 58 2e-06 UniRef50_Q3ADU9 Type I restriction-modification system, R subuni... 58 2e-06 UniRef50_Q1ZDQ8 ATP-dependent exoDNAse (Exonuclease V), alpha su... 58 3e-06 UniRef50_D0XHM4 Putative uncharacterized protein n=1 Tax=Vibrio ... 58 3e-06 UniRef50_A9G978 Putative uncharacterized protein n=2 Tax=Myxococ... 57 3e-06 UniRef50_C7NM10 Type I restriction enzyme R protein n=1 Tax=Kyto... 57 3e-06 UniRef50_C8Q076 Type III restriction enzyme, res subunit n=1 Tax... 57 3e-06 UniRef50_UPI0001C16ACF TPR repeat protein n=2 Tax=Nostocaceae Re... 57 4e-06 UniRef50_A1CDN6 DEAD/DEAH box helicase, putative n=2 Tax=Aspergi... 57 5e-06 UniRef50_C1GNS0 GPI inositol-deacylase n=2 Tax=Leotiomyceta RepI... 57 5e-06 UniRef50_A7FVD5 Restriction/helicase domain protein n=10 Tax=Bac... 57 6e-06 UniRef50_Q1NR12 Type III restriction enzyme, res subunit n=1 Tax... 57 7e-06 UniRef50_A1SXM9 Type III restriction enzyme, res subunit n=4 Tax... 56 7e-06 UniRef50_A3N1J8 Type I restriction enzyme, R subunit n=4 Tax=Bac... 56 7e-06 UniRef50_B7GLJ0 Type I site-specific restriction-modification sy... 55 1e-05 UniRef50_C5B0S1 Putative uncharacterized protein n=1 Tax=Methylo... 55 2e-05 UniRef50_A3VWG4 DNA/RNA helicase n=1 Tax=Roseovarius sp. 217 Rep... 55 2e-05 UniRef50_C3DG05 Putative uncharacterized protein n=1 Tax=Bacillu... 55 2e-05 UniRef50_C4XFR4 Putative uncharacterized protein n=1 Tax=Mycopla... 55 2e-05 UniRef50_Q2NH26 Putative type I restriction-modification system,... 54 3e-05 UniRef50_D2SCI9 Type III restriction protein res subunit n=2 Tax... 54 3e-05 UniRef50_C9B3B0 Type I restriction enzyme n=1 Tax=Enterococcus f... 54 3e-05 UniRef50_A7FML4 Type I site-specific deoxyribonuclease, HsdR fam... 54 3e-05 UniRef50_A0YWD0 Putative helicase n=1 Tax=Lyngbya sp. PCC 8106 R... 54 4e-05 UniRef50_B8D1X7 Type I site-specific deoxyribonuclease, HsdR fam... 54 4e-05 UniRef50_A6EW89 Helicase-related protein n=3 Tax=Gammaproteobact... 54 5e-05 UniRef50_C2PS26 Type I restriction enzyme, endonuclease subunit ... 54 5e-05 UniRef50_Q1NXV3 Helicase-like:Peptidase S24, S26A and S26B:Type ... 54 6e-05 UniRef50_A8ZTH8 Type III restriction protein res subunit n=1 Tax... 53 6e-05 UniRef50_D2P9I1 Type I restriction enzyme, R subunit n=17 Tax=Ba... 53 6e-05 UniRef50_UPI000197676D type I site-specific deoxyribonuclease Hs... 53 7e-05 >UniRef50_P08956 Type I restriction enzyme EcoKI R protein n=52 Tax=Gammaproteobacteria RepID=T1RK_ECOLI Length = 1170 Score = 2428 bits (6292), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1170/1170 (100%), Positives = 1170/1170 (100%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE 60 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE Sbjct: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE 60 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR Sbjct: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG Sbjct: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL Sbjct: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV Sbjct: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE Sbjct: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL Sbjct: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT Sbjct: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED 540 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED Sbjct: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED 540 Query: 541 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV Sbjct: 541 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 Query: 601 SAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 SAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN Sbjct: 601 SAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 Query: 661 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD 720 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD Sbjct: 661 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD 720 Query: 721 PTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITR 780 PTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITR Sbjct: 721 PTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITR 780 Query: 781 FNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK 840 FNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK Sbjct: 781 FNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK 840 Query: 841 IFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLV 900 IFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLV Sbjct: 841 IFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLV 900 Query: 901 AKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNK 960 AKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNK Sbjct: 901 AKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNK 960 Query: 961 LPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPN 1020 LPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPN Sbjct: 961 LPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPN 1020 Query: 1021 AQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRA 1080 AQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRA Sbjct: 1021 AQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRA 1080 Query: 1081 AVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRR 1140 AVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRR Sbjct: 1081 AVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRR 1140 Query: 1141 GGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 GGKAMLQRTFDDNLDTLLGKFSDYIWDELA Sbjct: 1141 GGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 >UniRef50_A4VH90 Type I restriction-modification system, R subunit n=2 Tax=Gammaproteobacteria RepID=A4VH90_PSEU5 Length = 1157 Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/1191 (41%), Positives = 710/1191 (59%), Gaps = 63/1191 (5%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP-PC 59 M SNF FL+ + +A AE + DPNTTLIK+R GEA A+ L I Sbjct: 1 MAVSSNFAFLQEHDPVFLQLANTAEQVFASDPNTTLIKLRQLGEALAQDLASRAGIEFDA 60 Query: 60 ENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYY 119 Q DLL +L + +D NI S+FH LR GN+A HE+ +A L++ LA+WY+ Sbjct: 61 TTQSDLLYKLSREIQLDQNIRSLFHTLRVEGNRATHEFRTQHREAMDGLKVARALAIWYH 120 Query: 120 RLVTKD-YDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 + K+ + F FV P H LK Q+E+ + +++ E+E QQ L L Sbjct: 121 QSFGKNAHAFKPGPFVTPTDPSAPLHD----LKNQIERLKTQLSESSQELEDNQQ-LAEL 175 Query: 179 NGY----IAILEGKQQETEAQTQARLAALEAQLAEKNAELAK-QTEQERK--------AY 225 + A+L +Q + E++ +LAA E A L K +TE ER+ Sbjct: 176 HKREAEEYAVL-AEQMDAESRGHKQLAA------EHEAALHKLRTEHERRIKALQLQLLT 228 Query: 226 HKEITDQAIKRTL------NLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNK 279 + Q + RT+ +LSE+ +R LID QL AGW+ADS L +SKGARPE G NK Sbjct: 229 QPQAAQQVMHRTMQATSSFDLSEDLTRILIDQQLIDAGWEADSLDLTYSKGARPEKGKNK 288 Query: 280 AIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFL 339 AIAEWPT + + ADYVLF GL PIA+VEAKR I++ R+ ++ RY++ F+ Sbjct: 289 AIAEWPT----SSPKACADYVLFAGLTPIAIVEAKRKRINIADRIPQAERYAREFNLS-- 342 Query: 340 RETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRD 399 +EH P + SW D G F++PF ++ NGR + + +SG W+RD Sbjct: 343 ----VEHQQPS----LLAGQTQSWSDGQGGH-FRVPFAFACNGRPFIKQLAEQSGTWFRD 393 Query: 400 VRDTRNMSKALPEWHRPEELLEMLG-SEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEK 458 +R N + L ++H+P++LL++L S+ + + A+ G + L LR YQE AV+ VE+ Sbjct: 394 LRSPANTRRPLQDFHKPDDLLDLLKRSQTDAEAKLKAE--GFTYLKLRDYQEKAVQTVEQ 451 Query: 459 AIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTR 518 A+ Q++ LLAMATGTGKTRT I +M+R ++++RFKRILFLVDR +LG+QA+ +F DT Sbjct: 452 ALANNQRDCLLAMATGTGKTRTIIGLMYRFLKAERFKRILFLVDRSALGQQAIDSFNDTT 511 Query: 519 INGD-TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAH 577 + + T I+DIK L D E T++ VATVQ++V R +SD P PV +DCI+VDEAH Sbjct: 512 LEQNHTLAQIYDIKELGDMAAEAETRVQVATVQAMVSRIFRSDTPPPVGEFDCIIVDEAH 571 Query: 578 RGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYT 637 RGY LD+E TEGEL R Y+S YRR+LDHFDA +I LTATPA HT +IFG+PV+ Y+ Sbjct: 572 RGYTLDQEMTEGELAVRDHSQYLSQYRRVLDHFDACRIGLTATPAKHTSEIFGKPVFTYS 631 Query: 638 YRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVA 696 YR AV D +L+D +PPI+ T+ +Q G+ KGE V I+ Q GEV LED+ F + Sbjct: 632 YREAVADDWLVDHEPPIRYETQLSQHGIRFEKGESVSVINTQTGEVDVAELEDELTFNIE 691 Query: 697 DFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLE 756 FNR ++ PAF++ +C+EL LDP G +KT++FCV AHA+ V L AFK Y + Sbjct: 692 SFNRRVITPAFDKVICDELAKELDPFGEEKTMIFCVNQAHAERVKNLLDEAFKTAYGEQY 751 Query: 757 HDAIIK-ITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVR 815 ++A ++ ITG +D KV+ +I R+ E PNI +TVDLLTTG+D+P ICN+VF+R+VR Sbjct: 752 NEAAVRIITGQSD----KVEQLIRRYKNEPNPNIAITVDLLTTGIDVPKICNLVFMRRVR 807 Query: 816 SRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEI 875 SRILYEQMKGRATR C ++ KT F+I+D VD+Y++LE+VDTM+P+V P + L+ LV+E+ Sbjct: 808 SRILYEQMKGRATRRCDDIGKTVFRIYDPVDLYASLEAVDTMKPLVKNPNISLEQLVSEL 867 Query: 876 TDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAA 935 ++ + S H+H+ L QR++ + + ++E ++LDEL QDA Sbjct: 868 ASGASHDAPGSQDDS--SHAHDVLDQLSQRVMRILRKAQHKAENKPSLKQKLDEL-QDAW 924 Query: 936 GVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVK 995 GV + L E GP +A + I +L + + + N P+ DE++ + Sbjct: 925 GVEPAKLHTHLHELGPQQAANFVRQHSQLINQLAAVSALLGSEN-YPLISTHSDELMVRE 983 Query: 996 SLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEES 1055 YG P D+LE+F + + N AL V+NRP+DLTR+ L E++ D+ F E+ Sbjct: 984 QNYGQNQKPADYLESFHEFIHKQLNQSAALGVVVNRPKDLTREQLREVRLLLDQHGFSEA 1043 Query: 1056 SLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLD 1115 SL+ AW+ N++IAA +IG+IR+AA+G+AL PF++RV A+ +I W+ Q WL+ Sbjct: 1044 SLKSAWRNQTNQEIAASIIGYIRQAAIGEALLPFDQRVAQAMQKIYALQPWTPVQRKWLE 1103 Query: 1116 RLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 RLA+ L +VV+D F GG L R NLD +L +D +W Sbjct: 1104 RLAKQLVHEVVIDPQQVNDA-FRNDGGLKALDRNLGGNLDRVLEALNDNLW 1153 >UniRef50_Q2P0A6 Type I restriction-modification system R subunit n=10 Tax=Proteobacteria RepID=Q2P0A6_XANOM Length = 1183 Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/1178 (40%), Positives = 699/1178 (59%), Gaps = 41/1178 (3%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE--NQ 62 SNF FL+ + + +A AE + DPNTTLIK+R F EA A+ L I + Q Sbjct: 31 SNFSFLQEHDPVFFKLASMAEQVFASDPNTTLIKLRQFAEALAQDLAGRAGILHDQRTTQ 90 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 DL+ +L + +D I +FH LR GN+A H + +A L++ LAVWY+R Sbjct: 91 ADLIYQLARELRLDRRIQELFHVLRVEGNKATHGFTTQHREAMDGLKVARDLAVWYHRAF 150 Query: 123 TKDY-DFPVPVFVLPERGENLY---HQEVLTLKQQLE--QQVREKAQTQAEVEAQQQKLV 176 ++ DF FV P+ EV LK +L+ +Q +++Q AE+++ + KL Sbjct: 151 GRNAADFKAGAFVPPKDPAAPLRDVQAEVHRLKAELDTARQQHDQSQALAELKSSEAKLN 210 Query: 177 ALNGYIAILEGKQQETEA-QTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITD--QA 233 A +E + Q A Q + L L ++ A L +Q + R+A +++ D Q Sbjct: 211 AELAEAMDIEARAQSALAVQREQELHRLRQDFEQRIASL-QQPDTARQAATQQVADATQQ 269 Query: 234 IKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGN 293 T +LSE+ +R LID QLR+AGW+ADS L +KG RPE G N AIAEWPT K N Sbjct: 270 ASNTFDLSEDLTRILIDQQLREAGWEADSLDLTHAKGTRPEKGRNLAIAEWPT-KVPRAN 328 Query: 294 QGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 ADYVLF GL P+AVVEAKR I++ R+ ++ RY++ F +R L Y P Sbjct: 329 ---ADYVLFAGLTPVAVVEAKRKQINIADRIPQAERYARDF---AMRGELAPAY-PATTA 381 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEW 413 A W D G F++P ++ NGR + + +SGIW+RD+R N+ + L ++ Sbjct: 382 IA------GWADGQGGH-FQVPLAFACNGRPFVKQLAEQSGIWFRDLRSPANLRRPLQKF 434 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 H PE++ ++L + + + A GM+ L LR YQ+ A++AVE A+ G + LLAMAT Sbjct: 435 HTPEDIADLLTRDRDQAERDLAQE-GMAYLNLRDYQQRAIQAVEGALASGARNCLLAMAT 493 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI-NGDTFNSIFDIKG 532 GTGKTRT I +++RL++++RF RILFLVDR +LG QA +D ++ T I+++ G Sbjct: 494 GTGKTRTMIGLIYRLLKAERFHRILFLVDRSALGTQATETMQDMQLEQNQTLAQIYNLDG 553 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQ 592 L D D T++ VATVQ++V+R QSD+P P+ +DCIVVDEAHRGY LD+E T+GEL Sbjct: 554 LDDTRTADETRVQVATVQAMVRRIFQSDDPPPIGTFDCIVVDEAHRGYTLDQEMTDGELA 613 Query: 593 FRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDP 652 R Y+S YRR+LD+FDA +I LTATPA HT +IFG+P+Y Y+YR AV D +LID +P Sbjct: 614 VRDHAQYLSQYRRVLDYFDACRIGLTATPAKHTTEIFGKPIYTYSYREAVADDWLIDHEP 673 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVADFNRGLVIPAFNRAV 711 PI+ T + G++ +GE+V I+ Q G+V LED+ DF + FNR ++ F+R V Sbjct: 674 PIRYTTALGKNGIHFDRGERVSVINTQTGDVDTADLEDELDFNIESFNRRVITANFDRVV 733 Query: 712 CNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK-ITGDADKD 770 C +L LDP G +KTL+FCV HA+ V +L AFK+ + + A + ITG +D Sbjct: 734 CEQLAIELDPDGEEKTLIFCVNQPHAERVKHQLDEAFKQVHGNYYNQASVAVITGKSD-- 791 Query: 771 ARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL 830 KV +I + ER P I +TVDLLTTG+D+P I N+VF+R+VRSRILYEQMKGRATR Sbjct: 792 --KVDQLIRNYKNERFPTIAITVDLLTTGIDVPRIANLVFMRRVRSRILYEQMKGRATRR 849 Query: 831 CPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRS 890 C ++ KT F+IFD VD+Y+ LE VDTMRP+V P + ++ LV+E+ +Y ++G S Sbjct: 850 CDDIGKTVFRIFDPVDLYAALEDVDTMRPLVKDPNISIEQLVHELGQQRSYDAPGSNGGS 909 Query: 891 FAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKG 950 A+ + +QL ++ R++ A + R+E +L EL + A GV + L + G Sbjct: 910 HADDALDQLSQRIMRVLRKA---QHRAEQRPDLRDKLSEL-ETAWGVAPAVLHTHLHKLG 965 Query: 951 PHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEA 1010 +A + P + +L + + + P+ + D ++ YG + P D+L++ Sbjct: 966 ARNAASFLREHPRLVEQLADVGVLLGT-DRYPVISEHTDTLLERAQNYGVNEAPADYLDS 1024 Query: 1011 FDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIA 1070 F++ ++ N AL ++NRPRDLTR L E++ D+ + E+ LR AW+++ +++A Sbjct: 1025 FNAFIREQINQSAALSVIVNRPRDLTRAQLREVRLLLDQHGYSEAHLRGAWRDSTQQEVA 1084 Query: 1071 ARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDD 1130 A +IG+IRRAA+G+AL PFE+RVD A+ I + W+ Q WL RLAQ L +VVLD D Sbjct: 1085 ASIIGYIRRAALGEALVPFEQRVDKAMQGIYAQRSWTPVQRRWLKRLAQQLIHEVVLDRD 1144 Query: 1131 VFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDE 1168 + NF GG L R D LD +LG +++WD+ Sbjct: 1145 TVQR-NFSGDGGALQLDRLLDGRLDQILGDLGEHLWDQ 1181 >UniRef50_B5W466 Type III restriction protein res subunit n=2 Tax=Bacteria RepID=B5W466_SPIMA Length = 1128 Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/1189 (39%), Positives = 686/1189 (57%), Gaps = 97/1189 (8%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEA----TAKHLGLLLNIPPCE 60 +NFEFL+ + + AE + DDP T LIK+R F E TA G ++ E Sbjct: 6 ANFEFLRSHDLQLVRLGALAERYFRDDPGTCLIKLRQFAEVLAQLTAAKTGQFVSTE--E 63 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 Q DLL+ L + + +FH++R GN+A HEY D A L++ +LA+W++R Sbjct: 64 AQADLLKRLKFQRVISPEVADLFHQIRIAGNRATHEYIGDHRSALTMLKMARQLAIWFHR 123 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQ---EVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 + + F FV P ++ + E+ L+ LE+ R +A+ +A + A++Q Sbjct: 124 TFSGNTSFRAGAFVPPPNPTDVTAELAAELERLRIALEE-TRSEAE-RARLAAEEQARAV 181 Query: 178 LNGYIAILEGKQQETEAQT----------QARLAALEAQLAEKNAELAKQTEQERKAYHK 227 L+ E +QE E ++ QAR +ALE QLA A +KQ ++ A Sbjct: 182 LSAE----EKARQEAENRSLWEQLAVESEQAR-SALEVQLATLQAA-SKQLPAQQTAAII 235 Query: 228 EITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTG 287 + D+A ++L E+E+R +ID QL+ AGW AD++ LR KG RP G N AIAEWPT Sbjct: 236 SLADRAAT-VIDLDEDETRAIIDQQLQDAGWLADTQNLRHDKGVRPVKGKNMAIAEWPTA 294 Query: 288 KDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHY 347 G ADY LFVG I +EAKR +V A ++++ RY++ F G + + Sbjct: 295 N------GIADYALFVGTSCIGFIEAKRRRKNVSAAIDQAERYARGFQAG-------DGF 341 Query: 348 SPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMS 407 +P D S F+ PF ++TNGR Y ++T+SGIW+RDVR N Sbjct: 342 AP--------------IDGSPWGEFQFPFVFATNGRPYLKQIETESGIWFRDVRQPTNRR 387 Query: 408 KALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEI 467 +AL W+ PE L +LG + + + P LR YQ+ A+ AVE A+ ++E+ Sbjct: 388 RALVGWYTPEGLAALLGMDRETAHAHLKTQPYRFGFPLRPYQQRAIAAVEMALESDRREM 447 Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI-NGDTFNS 526 L+AMATGTGKT+ AIA+++RL+ ++RF+R+ F+VDR +LG QA G F T++ F Sbjct: 448 LVAMATGTGKTKLAIALLYRLLTAKRFRRVCFVVDRSALGSQAAGEFRTTKVVTAKAFGD 507 Query: 527 IFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM---PVARYDCIVVDEAHRGYILD 583 IF ++GL D PE TK+H+ T+Q LVKR L + EP P+ +YD +++DE HRGY+LD Sbjct: 508 IFGLQGLEDITPESETKVHICTIQGLVKRVLYASEPRTVPPIDQYDLLLIDECHRGYLLD 567 Query: 584 KEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVI 643 +E ++ EL FRSQ DY+S YRR+L+HFDAVKI LTATPALHTVQIFGEPV+ Y YR AVI Sbjct: 568 REMSDAELSFRSQDDYISKYRRVLEHFDAVKIGLTATPALHTVQIFGEPVFTYAYREAVI 627 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERI-SPQGEVINDTLEDDQDFEVADFNRGL 702 DGFLID +PP+QI T ++ G+ GE ++ I SP G + DD +FEV +FN+ + Sbjct: 628 DGFLIDHEPPVQITTTLSRSGIQFRAGEALDAIYSPTGHLQRIYAPDDLNFEVEEFNKKV 687 Query: 703 VIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 + FN+AV EL ++DP KTL+F V +AHAD+VV++++ A Y ++E A+ K Sbjct: 688 ITIPFNKAVAKELAKHIDPNLPGKTLIFAVNDAHADIVVDQVKQAMADYYGEIEDAAVRK 747 Query: 763 ITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 ITG D KV +I + + +P I VTVDLLTTG+D+P I N+VFLR+V SRILYEQ Sbjct: 748 ITGSVD----KVGDLIRSYRNDAMPQIAVTVDLLTTGIDVPKITNLVFLRRVNSRILYEQ 803 Query: 823 MKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYK 882 M GRATR CPE++K +F+IFD VD+Y+ L+++ M+PVVV P + L+ L +E + Sbjct: 804 MLGRATRQCPEIDKETFRIFDAVDLYAKLQTLTEMKPVVVNPAISLEQLFDEFA-----Q 858 Query: 883 ITEADGRSFAEHSHEQLVAKLQRIIG-LATFNRDRSETIDKQVRRLDELCQDAAGVNFNG 941 +TEAD R+ +Q++ KL+R +G LA RDR E G Sbjct: 859 VTEADHRAVI---RDQILVKLRRKLGRLADQARDRYEA--------------DIGETPEE 901 Query: 942 FASRLREKG-PHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDID---DEVVSVKSL 997 R R P + V ++ PG I R+ D N L I DEVV+V Sbjct: 902 TLERFRTSPLPELAGWVSDR-PG-IGRI----LDWNPEGGEGSLLPISHHPDEVVAVTRG 955 Query: 998 YGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSL 1057 YG P DFL++F + V+ + N AL V+ RPR+LTR L EL+ D+ + E++L Sbjct: 956 YGSGQKPDDFLDSFTAYVRDNVNQLAALTVVLQRPRELTRAQLRELRLELDKMGYSETNL 1015 Query: 1058 RKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRL 1117 R+AW+E +NEDIAA +I IR+AA+GD L P++ERV A+ RI + W+ Q WL R+ Sbjct: 1016 RQAWQEAKNEDIAASIIDFIRQAALGDPLIPYDERVKAAMKRILAKRAWTDPQRKWLKRI 1075 Query: 1118 AQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 + + + ++D F GG L R F+ L+ +LG ++ +W Sbjct: 1076 GEQVAREFIVDRAALDQEPFGNDGGFNRLNRIFEGQLEAILGDINEELW 1124 >UniRef50_B2J091 Type III restriction enzyme, res subunit n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J091_NOSP7 Length = 1105 Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/1182 (40%), Positives = 677/1182 (57%), Gaps = 95/1182 (8%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPC- 59 M NF FL + + AE + DDPNT LIK+R FGE A+ + + Sbjct: 1 MPESLNFSFLAVHDQQLVRLGALAERYFADDPNTCLIKLRQFGELLAQLAAANIGLYEVA 60 Query: 60 -ENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 E Q DLL L + + +FH+LR+IGNQA HE + A L+ L +W+ Sbjct: 61 DERQIDLLNRLRDRGLIKGEVDRLFHELRKIGNQATHELSGNHRTALSGLKYALALGIWF 120 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQ---AEVEAQQQKL 175 +R +F F+ P + E TLK +L + +R++AQ AE EAQ++ Sbjct: 121 HRAFGGGCNFDPGAFIPPPDPKI----ETETLKAELAR-LRDEAQRHLVIAETEAQRRTS 175 Query: 176 VALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITD-QAI 234 E QE +A+ Q L L E A+ Q++ + + IT Q Sbjct: 176 A---------EDLAQEAQAKVQEVLQ----HLVEIQAQAQNQSQH---SIQQTITQAQVA 219 Query: 235 KRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 + + L E E+R LID QLR AGW+ADS+ L + RP+ G N AIAE+PT Sbjct: 220 ESGVRLDERETRRLIDIQLRAAGWEADSEELTYQNSIRPQKGRNLAIAEYPTAN------ 273 Query: 295 GFADYVLFVGLKPIAVVEAKRNNIDVP-ARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 G ADY LF GL+ + VVEAKR + DV LN++ RYS+ F L E LL Sbjct: 274 GRADYALFCGLQIVGVVEAKRQSKDVSEGALNQAKRYSEGFQ--VLGEELLAG------- 324 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEW 413 WQ+ +K+PF ++TN R Y ++TKSGIW+ D+R N+ L W Sbjct: 325 -------GPWQN------YKVPFVFATNARPYLQQLQTKSGIWFCDLRRPTNLRVCLATW 371 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 H P+ LL+ L + + N L LR YQ A++AVE A+ + Q+ +LLAMAT Sbjct: 372 HSPQGLLDALAQDIDQANTRLTQEGFNYGLELRDYQIRAIQAVESALAREQRILLLAMAT 431 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI-NGDTFNSIFDIKG 532 GTGKT+T IA+++RL++++RF+RILFLVDR +LGEQ AF+D+R+ N +F IF+IK Sbjct: 432 GTGKTKTCIALVYRLLKTKRFRRILFLVDRTALGEQTSNAFKDSRMENLQSFADIFEIKD 491 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVA---RYDCIVVDEAHRGYILDKEQTEG 589 L + + TK+H+ATVQ +VKR L + V +YDCIVVDE HRGY+LD+E ++ Sbjct: 492 LKEIELDRDTKVHIATVQGMVKRVLYPSDSASVITPDQYDCIVVDECHRGYLLDRELSDR 551 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLID 649 EL+FR DYVS YRR+L+HFDAVKI LTATPALHT QIFGEPVY Y+YR AVIDG+LID Sbjct: 552 ELEFRDFNDYVSKYRRVLEHFDAVKIGLTATPALHTTQIFGEPVYIYSYREAVIDGWLID 611 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVADFNRGLVIPAFN 708 + P +I T+ ++EG+ + GEQ+E +PQ G++ D+ EV FNR ++ FN Sbjct: 612 HEVPFKIRTKLSEEGMVWNPGEQMEFFNPQTGQLDLVHAPDEVKIEVEQFNRKVITEDFN 671 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDAD 768 R VC L ++DP+ +KTL+FC T+ HAD+VV +L+ AF+ Y +E DAI+KIT +AD Sbjct: 672 RVVCEALAQHIDPSLPEKTLIFCATDGHADIVVNQLKQAFQSIYGSVEDDAIVKITRNAD 731 Query: 769 KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 K +I +F E P + VTVDLLTTG+DIP+ICN+VF+R+V SRILYEQM GRAT Sbjct: 732 KPLE----LIRKFRNEVNPKVAVTVDLLTTGIDIPAICNLVFIRRVNSRILYEQMLGRAT 787 Query: 829 RLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADG 888 RLC E+NK F+IFD V +Y + V +M+PVVV P + LV E+ ET K +A Sbjct: 788 RLCNEINKEVFRIFDAVRLYEAIAPVSSMKPVVVNPNISFTQLVEEL---ETVKNPDA-- 842 Query: 889 RSFAEHSHEQLVAKLQRI-IGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLR 947 E QL+ K+QR L+ N+++ E I AG+ + S L+ Sbjct: 843 ---LETVINQLLVKIQRKRRHLSPNNQEQLEAI--------------AGMPLSNMVSHLK 885 Query: 948 EKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDID-DEVVSVKSLYGDYDTPQD 1006 + P E + + IA++ D+ + P+ + DE+V ++ YG+ + P+D Sbjct: 886 QSTPQQVREWWEQRKA-IAQI----LDLRDGGTVPMLISRHADELVGIERGYGNAERPED 940 Query: 1007 FLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRN 1066 +L++F + + + N PAL V RPR+LTR L EL+ + E +L+ AW+E N Sbjct: 941 YLDSFRAFLLENMNKIPALIVVTQRPRELTRAQLKELRIGLYTAGYTEINLKTAWREITN 1000 Query: 1067 EDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVV 1126 EDIAA +IG IR+A +GDAL P+ ERVD A+ +I W+ Q WL+R+ + +K + + Sbjct: 1001 EDIAASIIGFIRQATLGDALIPYTERVDRAMKKILASQLWTPPQRKWLERIGKQMKAETI 1060 Query: 1127 LDDDVFKTGNFHRRGGK-AMLQRTFDDNLDTLLGKFSDYIWD 1167 +D + G F +GG L + FD +L+ ++ + IWD Sbjct: 1061 VDREALDKGEFKTQGGGFERLNKVFDGDLENIVIQIHKNIWD 1102 >UniRef50_Q7UK96 Type I restriction enzyme EcoKI R protein n=3 Tax=Bacteria RepID=Q7UK96_RHOBA Length = 1138 Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/1188 (39%), Positives = 668/1188 (56%), Gaps = 87/1188 (7%) Query: 3 NKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQ 62 + NF FL+G A A AE DDPNT L+K+R E A+ + L I +Q Sbjct: 10 HPGNFWFLEGYQPVLLAHALRAERYVFDDPNTALVKLRQLAEFFAREVAAELGIA-TGSQ 68 Query: 63 HDLL---RELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYY 119 D + R L ++ + V +R+ GN A H + DA CL+L +LA+W++ Sbjct: 69 EDFVNVERRLRDSGILNQQLRDVMRTVRQKGNSAAHSLAGERRDALHCLKLVRQLAIWFH 128 Query: 120 RLVTKDYDFPVPVFVLPE---RGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLV 176 + V +F FV P +G+ +E+ L++ +E+Q E +AE E + + Sbjct: 129 KTVRGANNFHAGPFVPPADPAQGDEQLSEELARLRETVEKQQAELDAAKAESEKLGEVVR 188 Query: 177 ALNGYIAILEGKQQ-------ETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEI 229 + +G +Q ETE Q R+ E L+E A+ A+Q+ + R+ + Sbjct: 189 DRQSAYELAKGNEQAAMELAAETEETLQQRIEDYERLLSETAAKNAEQSAEAREDIIE-- 246 Query: 230 TDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKD 289 Q + ++L E ++R LID QLR AGW+AD+ LR++ G RP+ G N AIAE PT Sbjct: 247 ASQKAAQEISLDEFDTRKLIDQQLRDAGWEADTSELRYANGIRPQKGRNMAIAEVPT--- 303 Query: 290 ETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSP 349 + G ADYVLF GL PIA VEAKR + + +++++RYSK F S Sbjct: 304 ---DDGIADYVLFTGLTPIATVEAKRKRRNARSAIDQAHRYSKSF-----------RMSS 349 Query: 350 DEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKA 409 D V P W + + +PF +STNG + + +SGIW+RDVR N +A Sbjct: 350 DYVQPGGP-----WGE------YSVPFVFSTNGTPFHRQLIDQSGIWFRDVRVETNHPRA 398 Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILL 469 L W+ PE L ++L + N P L LRYYQ DA+ AVEKAI K Q EILL Sbjct: 399 LTGWYTPEGLQDLLKLDIPAANAKLETEP-RDYLPLRYYQRDAIEAVEKAIAKDQTEILL 457 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI-NGDTFNSIF 528 AMATGTGKTRTAI +++RLI++ RF RILF+VDRRSLGEQA AF+D ++ +F I+ Sbjct: 458 AMATGTGKTRTAICLLYRLIKASRFNRILFVVDRRSLGEQAFDAFKDVKLEQNQSFPEIY 517 Query: 529 DIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD---EPMPVARYDCIVVDEAHRGYILDKE 585 D+K L D P+ TK+H+ T+QS+VKR + D EP PV +YDCIV+DE HRGY LD++ Sbjct: 518 DVKELGDVKPDRETKLHLCTIQSMVKRVVDQDSNSEPYPVDQYDCIVIDECHRGYTLDRD 577 Query: 586 QTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDG 645 +E EL +R QLDYVS YRR+LDHFDAV+I LTATPALHT +IFG PVY+Y+YR AVID Sbjct: 578 MSEEELGYRDQLDYVSKYRRVLDHFDAVRIGLTATPALHTTEIFGSPVYQYSYRQAVIDN 637 Query: 646 FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND-TLEDDQDFEVADFNRGLVI 704 L+D +PP I+T ++ G++ GE V+ + I D T D+ D E+ FNR + Sbjct: 638 NLVDHEPPFIILTELSESGMHWDAGETVKYFDTVTKSIADETTPDEIDIEIDGFNRLAIT 697 Query: 705 PAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT 764 +FN+ VC+ L +D T KTL+FCV + HADMVV L AA ++++ HD + KIT Sbjct: 698 ESFNQVVCDVLAQQIDHTQPGKTLIFCVRDTHADMVVRLLTAAIEQRHGPQPHDTVKKIT 757 Query: 765 GDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMK 824 GD ++ + ++ RF E +P VVTVDLLTTG+D+P I N+VFLR+ +SRIL++QM Sbjct: 758 GDIERTSEAIR----RFKNEPIPKYVVTVDLLTTGIDVPEITNVVFLRRTKSRILFDQMI 813 Query: 825 GRATRLCPEV-----NKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSE 879 GRATRLC ++ +K F I+D V +Y L+ M+PVV +P + LV E+ S Sbjct: 814 GRATRLCKDLFFDGEDKEYFHIYDAVGVYEALQDHTDMKPVVAKPFTMFKKLV-ELFQSS 872 Query: 880 TYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQ-VRRLDELCQDAAGVN 938 + AD R +QLVAKL+R ++ +I+K + + L D Sbjct: 873 SDPDAHADIR-------QQLVAKLRR----------KTPSINKNWLDTFELLAGDTPEAI 915 Query: 939 FNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLY 998 + +AS + W I L++ K D + I + D +V ++ Y Sbjct: 916 SDLWASSSDAELQQW----LTDHASLITELDQRKAD-----GSIIISEHADALVGIERGY 966 Query: 999 GDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLR 1058 G P+D+LE+F + PAL V RPRDLTRK L ELQ ++ F E++++ Sbjct: 967 GGNQKPEDYLESFRQFLVEHKTDIPALILVTTRPRDLTRKDLKELQLQLEQHGFNETAIK 1026 Query: 1059 KAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLA 1118 A K+T N+DIAA ++G +R A + + L P+EERVD A+ I W +Q WL+R+ Sbjct: 1027 SAVKDTTNQDIAASILGFVRHAMLNEPLLPYEERVDEAMRSILTSQKWQPQQRKWLERIG 1086 Query: 1119 QALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 + +KE VV+D D+F+ G F GG + + FD L+ ++ IW Sbjct: 1087 KQIKENVVIDRDLFEVGAFQDHGGFVKIDKVFDGRLNEVMQSIITSIW 1134 >UniRef50_C3MF99 Putative restriction endonuclease type I with R subunit / type III with Res subunit n=1 Tax=Rhizobium sp. NGR234 RepID=C3MF99_RHISN Length = 1140 Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/1182 (38%), Positives = 669/1182 (56%), Gaps = 75/1182 (6%) Query: 6 NFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNI--PPC-ENQ 62 NF+ LK ++ + AE + DD NT+LIK R FGE K + L + P E Sbjct: 8 NFDHLKSLSPELQRLGTLAERFFADDANTSLIKSRQFGEYMVKEIAALSGVYDPAARETT 67 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 HDLLR L + + +FH +R+ GN+A H +A L+ L VWY R Sbjct: 68 HDLLRRLATQQILPREVADIFHAVRKSGNEATHNLAGSPTEALAALKFCRALGVWYRRTY 127 Query: 123 TKDYDFPVPVFVLPERGENL---YHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALN 179 +D +F FV P+ ++ E+ TL++Q+ + + A + + + K A Sbjct: 128 GRDPNFRPGPFVPPKASADIDQATQAELATLRRQVREAEAQLAAAHSSAD-ELAKARAAA 186 Query: 180 GYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRT-- 237 +A QT + A +A+L+ K AEL K + + + E ++ Sbjct: 187 DELARQAAADNAVWEQTAVEMEANQAELSRKLAELQKAAQAQPQQLQMEFKQAGLQAASR 246 Query: 238 LNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 L L E ++R LIDAQL AGW+ADS L + GARPE G N AIAEWP G A Sbjct: 247 LELDERQTRRLIDAQLVDAGWEADSDRLSYQLGARPEEGRNLAIAEWPAAG------GRA 300 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY LF+GL + ++EAKR ++DVP+ L ++ RY++ P+ H Sbjct: 301 DYGLFIGLTCVGIIEAKRESVDVPSTLQQAERYARTI-----------ALPPENSHPG-- 347 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 W F++PF ++TNGR + +TKSGIW+ D+R N + L W P+ Sbjct: 348 ---GLWNHGLADP-FRVPFVFTTNGRPFVRQWQTKSGIWFCDLRRDTNHPRPLTTWFSPK 403 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 +LL++L ++ Q A++ + +R YQEDA+ A+E A+V GQ++IL++MATGTGK Sbjct: 404 DLLDILATDLDAAAQGLAED-SFGKGRMRPYQEDAIAAIENAVVAGQRDILVSMATGTGK 462 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDIKGLTDK 536 TRT+IA+M+RL++ +RF+RILFLVDR++LG+Q A E T I G F I+ + GL K Sbjct: 463 TRTSIALMYRLLKHKRFRRILFLVDRKALGKQTSDALETTEIEGMLNFAQIYKVAGLEKK 522 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVAR-----YDCIVVDEAHRGYILDKEQTEGEL 591 PED ++ VATVQSL+ R L +EP P R +DCI+VDEAHRGY LD E E ++ Sbjct: 523 VPEDEDQVQVATVQSLIARIL--NEPDPAKRPTPGTFDCIIVDEAHRGYTLDAELRESDV 580 Query: 592 QFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQD 651 FR+ DY SAYR+ILD+FDAVK+ALTATPALHT +IFG PV+ Y YR AV++G+L D Sbjct: 581 GFRNLDDYQSAYRQILDYFDAVKVALTATPALHTREIFGHPVFHYGYRQAVVEGYLNDHL 640 Query: 652 PPIQIITRNAQEGVYLSKGEQVE---RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 PP +I T ++ G++ GE+VE R + Q ++ E D++VADFN+ + AFN Sbjct: 641 PPKRITTALSEAGIHFEGGEEVEIIDRTTGQIDLFELPDEVSLDYDVADFNKRVYSEAFN 700 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ--LEHDAIIKITGD 766 R VC + + P+ KTL+F +AHAD +V L +++Y + H ++KITG+ Sbjct: 701 RMVCRAIATEIPPSKPGKTLIFAARDAHADDLVRLLVEELQEEYGNDAVPHGMVMKITGN 760 Query: 767 ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 DK +I +F + P VVTVDLLTTG+D+P+ICN+VF+R+V+SRILY+QM GR Sbjct: 761 VDK----ADDLILKFKNDPHPKYVVTVDLLTTGIDVPTICNLVFVRRVKSRILYDQMIGR 816 Query: 827 ATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEA 886 ATRLCPE+ K F+IFD VD+Y+ L+ + MRPVVV+P + L LV ++ +ET E Sbjct: 817 ATRLCPEIGKEHFRIFDAVDLYAELQEMTDMRPVVVKPDISLGQLVTDLDKAET----EE 872 Query: 887 DGRSFAEHSHEQLVAKLQRIIGLA--TFNRDRSETIDKQVRRLDELCQDAAGVNFNGFAS 944 D A ++ A R+ +F R ET + V+RL L S Sbjct: 873 DKSWVAGQVIVRMRAMANRMDAETRESFERHTGETPENAVQRLATLS-----------GS 921 Query: 945 RLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTP 1004 L++ W P I LE+ + ND + +DE++ ++ ++G TP Sbjct: 922 ELQD----W----LKSHPRVIELLERRPIRTGSGNDGVVISTHEDELLRIEEIFGKNTTP 973 Query: 1005 QDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKET 1064 +D++ F+ ++ + N PAL AV RPRDLTRK L EL D +++ E+ LR A+ + Sbjct: 974 EDYITGFERFIRENMNQVPALIAVTQRPRDLTRKELSELAGLLDEKNYSEAMLRAAYGKV 1033 Query: 1065 RNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEK 1124 RN DIAA +IG +R+AA+GD L P+ RV++A+ +I+ W+ +Q WL R+ +ALK+K Sbjct: 1034 RNADIAAHIIGFVRQAAIGDPLIPYATRVENAIGKIEASRPWTQKQKEWLRRIGRALKDK 1093 Query: 1125 VVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 V D + G F +GG + + FD LD +L F++ IW Sbjct: 1094 PVADPTLLDQGVFADKGGFKRISQEFDGELDDVLHAFNEAIW 1135 >UniRef50_B6R0S4 Type III restriction enzyme, res subunit family n=5 Tax=Alphaproteobacteria RepID=B6R0S4_9RHOB Length = 1131 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/1190 (38%), Positives = 675/1190 (56%), Gaps = 88/1190 (7%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE 60 MM++SNF LK +N + AE + D NT LIK R + E K + E Sbjct: 1 MMSQSNFLHLKALNSDLCRLGMVAEQVFSLDANTCLIKTRQYTEFMVKDVAARAAAYRAE 60 Query: 61 NQHD---LLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVW 117 ++ LL L + + + +FH +R+ GN A H + A L+ L VW Sbjct: 61 DKETAFALLNRLSRDGILPKQVADIFHAVRKPGNDAAHGVEGTSSQALTSLKFCMVLGVW 120 Query: 118 YYRLVTKDYDFPVPVFVLPERGENLYHQ---EVLTLKQQ---LEQQVREKAQTQAE--VE 169 Y R D +F P F++P+ + L + E+ K+Q E ++++ A++ E E Sbjct: 121 YQRSYGPDVNFEPPPFIVPKAPKVLSVELAAEIADYKEQSKLFEDRLKKLAKSDEERAAE 180 Query: 170 AQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEI 229 Q + A ++ + ++Q +E LE +A+ AE +QTEQ+ + Sbjct: 181 LDQVRQEAERAVRSLSDLEKQNSE---------LEKAIAKLQAEAEEQTEQQLQKLKTLA 231 Query: 230 TDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKD 289 + A K L L+E ++R LID QL+ AGW+AD+ LR+S GARPE G N+AIAEWPT Sbjct: 232 QNAAAK--LELNENDTRKLIDRQLQDAGWEADTSILRYSSGARPEKGRNQAIAEWPT--- 286 Query: 290 ETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSP 349 G DY LFVGL+ + V+EAKR + DVP+ L ++ Y+ H Sbjct: 287 ---EGGRVDYALFVGLECVGVIEAKRQSADVPSVLQQADEYA--------------HKIK 329 Query: 350 DEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKA 409 E + + + WQ + +++PF +++NGR + KTKSGIW+RDVR N + A Sbjct: 330 LEAKQLL--IDAPWQH-GLDEPYRVPFIFASNGRPFVRQFKTKSGIWFRDVRLHTNHANA 386 Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILL 469 LP W P++L L + ++ N A+ + LR YQE+A+ AVEK I G++ +L+ Sbjct: 387 LPSWFSPDDLAGKLKQDTEQANNALAEE-AFGQTSLRPYQEEAIDAVEKEIAGGKRSVLV 445 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIF 528 AMATGTGKTRT IA+M+RL++++RFKRILFLVDR +LG+Q A T G F+ I+ Sbjct: 446 AMATGTGKTRTCIALMYRLLKTKRFKRILFLVDRTALGDQTTDALNTTEFEGFYKFSQIY 505 Query: 529 DIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP---MPVARYDCIVVDEAHRGYILDKE 585 ++ GL K P+D+T+IHVATVQSLV R +++P + YDCIV+DEAHRGY LD + Sbjct: 506 NVAGLDQKLPDDATQIHVATVQSLVARINNTEDPKERLTPGMYDCIVIDEAHRGYTLDAD 565 Query: 586 QTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFG--EPVYRYTYRTAVI 643 EGE +R Y SAYR +L +FDAVKI LTATPALHT+QIF +P Y Y YR AV+ Sbjct: 566 LKEGEENYRDVSAYESAYRNVLSYFDAVKIGLTATPALHTLQIFDCEKPSYSYGYRQAVV 625 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFE--VADFNR 700 +GFLID PP +I T A+ G+ + GE VE + GEV L D+ + E +A FNR Sbjct: 626 EGFLIDHLPPKRITTALAEAGITFNGGEDVEIVDRHTGEVTLHNLPDEVELEYDLAKFNR 685 Query: 701 GLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAI 760 + FNR VC + N + P KTL+F T+ HAD +V L+ +++Y L +D + Sbjct: 686 RVYSENFNRIVCQTIANEIAPDAPGKTLIFAATDTHADDIVRLLKEELREEYGDLHNDMV 745 Query: 761 IKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 +KITG R + +I +F + LP VVTVDLLTTGVDIP + N+VF+R+V+SRILY Sbjct: 746 MKITGSV----RDAKGLIKKFRNDPLPKYVVTVDLLTTGVDIPVLANLVFVRRVKSRILY 801 Query: 821 EQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSET 880 +QM GRATRLCPE+ K +F+IFD VD+Y+ L+ + MRPVVV+P + L L+ ++ Sbjct: 802 DQMIGRATRLCPEIGKQNFRIFDAVDLYAELQQMSDMRPVVVKPNMPLVELIADLD---- 857 Query: 881 YKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFN 940 + A+ ++ Q+V K++ + +R+DE ++A Sbjct: 858 -RAPNAEEENWVAG---QVVVKMRAL-----------------AKRMDEAGREALDSAMG 896 Query: 941 GFA-SRLREKGPHWSAEV---FNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKS 996 G A + + + AEV +K P + L + + L + +D+++ ++ Sbjct: 897 GDADTVINDLSRKTGAEVKDWLSKHPRALENLVRALAKKDPLKNGVAISYHEDQLLHIRE 956 Query: 997 LYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESS 1056 ++GD TP+ ++E+F+ V+ + N+ PA+ AV +PR+LTRK L +L D HF E+ Sbjct: 957 VFGDNATPESYIESFEEFVRENMNSIPAMVAVTQKPRNLTRKELTDLAAQLDEAHFSEAM 1016 Query: 1057 LRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDR 1116 LR A+ RN DIAA +IG++R+AA+GD L P+ RV++A+ +I G DW S Q+ WL R Sbjct: 1017 LRAAYGRARNADIAAHIIGYVRQAALGDPLVPYASRVENAIEKIIGSRDWKSNQIQWLRR 1076 Query: 1117 LAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 + +ALK+K V D + G F +GG + + FD L +L + ++ IW Sbjct: 1077 IGRALKDKPVADPSLLNQGVFQDKGGFKRISKEFDGKLGDVLEEINEAIW 1126 >UniRef50_A6TLK4 Type III restriction protein, res subunit n=3 Tax=Clostridiaceae RepID=A6TLK4_ALKMQ Length = 1086 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/1181 (38%), Positives = 674/1181 (57%), Gaps = 117/1181 (9%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE--N 61 KSNFEFL + AE+ D N++LIK+ +FGE + L + P E N Sbjct: 2 KSNFEFLNKTFPVLANLGSTAESYLYSDANSSLIKLGLFGETIVNLMLKLDQMEPPEYDN 61 Query: 62 QH-DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 H + ++ L K + NI + + LR N+AVH ++ D + L +G LA+W+ + Sbjct: 62 THANRIKLLKKEGLISQNIDDIIYSLRIARNKAVHSGYDSFEDCVILLEMGHNLAIWFMQ 121 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 D+ + FVLPE QA+ EA Sbjct: 122 -TYGDWQYAPAEFVLPEDNSQ-----------------------QADFEA---------- 147 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 +L+ K++ T E L +K ++ E+ ++A + + L Sbjct: 148 ---LLKEKEELIAVLT-------EKVLKQKPSKTLSSKERLKRA-------ASASEMMKL 190 Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 SE+E+R+LIDAQLRK GW+ D+ LR+SKG RP+ G N AIAEWPT G+ G+ADYV Sbjct: 191 SEKETRYLIDAQLRKVGWEVDTVNLRYSKGTRPQKGKNIAIAEWPTNS-SVGDHGYADYV 249 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LF+GLK + ++EAKR +D+P+ L+ +C D Y+ + E Sbjct: 250 LFIGLKLVGIIEAKRMFLDIPSVLD-----YQCKD-----------YAKNIKDEHAEYMI 293 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 SW + +K P ++TNGR+Y ++TKSGIW+ DVR N+ KA W P+ +L Sbjct: 294 DSWGE------YKAPLLFATNGRKYLKQLETKSGIWFLDVRKPANIPKAQQGWMSPDGIL 347 Query: 421 EMLGSEPQKQNQWFADNP-----GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 E+L + + N + P L LR YQ DA+ A EKAI++G+Q LL+MATGT Sbjct: 348 ELLEKDIEAANASLEELPYDLLRDKDGLNLREYQIDAIEAAEKAIIEGKQTALLSMATGT 407 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLT 534 GKTRT + M++R +++ RFKRILFLVDR +LGEQA F++ ++ T + I++IK L Sbjct: 408 GKTRTVLGMIYRFLKTGRFKRILFLVDRSALGEQAQDVFKEVKLEDLMTLDEIYNIKNLE 467 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQS-DEPMP-VARYDCIVVDEAHRGYILDKEQTEGELQ 592 D+ + TKI VATVQSLVKR L + DE MP + YD IV+DEAHRGYILDKE E E+ Sbjct: 468 DRMIDKETKIQVATVQSLVKRILDNQDETMPSIIDYDLIVIDEAHRGYILDKEMDEDEIL 527 Query: 593 FRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDP 652 +R+Q DY+S YR ++++FD+VKIALTATPALHT +IFG+PVY YTYR AV++G+L+D D Sbjct: 528 YRNQDDYISKYRAVIEYFDSVKIALTATPALHTSEIFGKPVYNYTYREAVVEGYLVDHDA 587 Query: 653 PIQIITRNAQEGVYLSKGEQVERISP-QGEVIN-DTLEDDQDFEVADFNRGLVIPAFNRA 710 P I+T+ ++EG+ KGE V P GE++N D LED+ F+V FNR ++ +FNR Sbjct: 588 PHTIVTKLSKEGINYEKGETVAIYDPVTGEIMNSDELEDELKFDVEKFNRQVITESFNRT 647 Query: 711 VCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD-ADK 769 V E++ LDP G KTL++ V ++HAD++V+ L+ F+ +++DAI+KITG Sbjct: 648 VLIEISKELDPEGEGKTLIYAVDDSHADLIVKILKEIFEPY--GVDNDAIMKITGSVGGG 705 Query: 770 DARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 + +KV + RF E+ PNI VTVDLLTTG+D+P I +VF+R+V+SRIL+EQM GRATR Sbjct: 706 NKKKVLEAVKRFKNEKYPNIAVTVDLLTTGIDVPEITTLVFMRRVKSRILFEQMMGRATR 765 Query: 830 LCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVN--EITDSETYKITEAD 887 LCPE+ KT F+I+D + +Y +L+ V+TM+PVV P + L+ E+ +E + D Sbjct: 766 LCPEIGKTHFEIYDPIGVYESLQPVNTMKPVVANPSTSFEDLLTGLEVLPTEKQIKNQID 825 Query: 888 GRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLR 947 ++AKLQR + RS +K + +L + G + F +++ Sbjct: 826 ----------MIIAKLQR--------KKRSMN-EKTMAHFIDL---SGGQDPTEFIGKIK 863 Query: 948 EKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDF 1007 + E K + LK N+ A + D +DE++S YG+ P+D+ Sbjct: 864 GMSAEDAKEHIIKNKKL---FDMLKEGTNDPRRAVVISDKEDELLSHTRGYGEGKKPEDY 920 Query: 1008 LEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNE 1067 LE F + + + N AL V RP++LTR L L+ DR F E L AWKE +N+ Sbjct: 921 LEEFKTFITNNFNKIVALNIVCTRPKELTRDSLKSLKLELDRHMFTEQQLNTAWKEVKNQ 980 Query: 1068 DIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVL 1127 DIAA +I IR+ A+G L EER+ +A+ R+K +D++ +L W++R+ + L + +L Sbjct: 981 DIAADIISFIRQQAIGSTLLSHEERIKNAVDRLKKNHDFNKMELGWIERIEKNLLLESIL 1040 Query: 1128 DDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDE 1168 D F+TG+F GG + + F + LD ++ + ++Y++D+ Sbjct: 1041 DQATFETGSFKTAGGYNKINKIFKNQLDDIIQELNEYLYDD 1081 >UniRef50_B2A6M4 Type III restriction protein res subunit n=5 Tax=Firmicutes RepID=B2A6M4_NATTJ Length = 1082 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1182 (37%), Positives = 686/1182 (58%), Gaps = 121/1182 (10%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCEN 61 M KSNF+FL G + AE N DPNTT+IK+RMF E K + + N+ E+ Sbjct: 1 MQKSNFDFLTGDWSILSELGEIAEKNLHTDPNTTIIKLRMFAETLVKFIFAVENLEEPED 60 Query: 62 QHDLLRE--LGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYY 119 Q + R L K + D++L +FH +R+IGN+A H + +++DA+ LR+ FR++VW+ Sbjct: 61 QKQVSRLAILKKEDLLTDDLLDLFHTIRKIGNKAAHAGYGNIDDAKTLLRMAFRISVWFM 120 Query: 120 RLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALN 179 ++ + +DF P +V PE K E +E+ + + + ++K+ L Sbjct: 121 QVYGR-WDFEPPAYVEPE-------------KIDFESLEKERERLEKIASSYEKKVKKLE 166 Query: 180 GYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLN 239 + L K A ++ E ++ERK +++ L Sbjct: 167 NELNSLRSK-------------------ASRDDE-----KKERKTKARQLGT-----GLE 197 Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 L+E E+R +ID +LR GW+AD++T+R+SKG RPE G N AIAEWP G DY Sbjct: 198 LTEAETRTIIDDKLRAVGWEADTETIRYSKGIRPEKGRNLAIAEWPV------KNGSVDY 251 Query: 300 VLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 LFVG++ I ++EAKR + ++ + + ++ +YSK Y Sbjct: 252 ALFVGMQFIGIIEAKRKSKNIQSDIEQAKQYSKRI------------------------Y 287 Query: 360 ETSWQDTSGK-QRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 + ++ SG +K+PF ++TNGR Y ++ KSGIW+ D R N + L +W+ PE Sbjct: 288 QVENEEISGPWNGYKVPFLFATNGRPYLKQLEHKSGIWFLDARKKTNHPRPLKDWYSPEG 347 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 L ++ ++ + + P + LGLRYYQE+A++A+EK + +G+Q +L+AMATGTGKT Sbjct: 348 LTDLSKKNIEEATKELKEEP-LDYLGLRYYQEEAIKAIEKGLEEGRQSLLIAMATGTGKT 406 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLTDKF 537 R AI +++RL++S+RFKR+LFLVDR +LG+QA AF+D+++ ++F IF+++ L Sbjct: 407 RMAIGLIYRLVKSRRFKRVLFLVDRNALGKQAENAFKDSKLESFNSFTEIFELQSLKAPN 466 Query: 538 PEDSTKIHVATVQSLVKRTL----QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 P TK+H++TVQ +++R + D+P V +YDCIVVDEAHRGY LD E E EL F Sbjct: 467 PNPETKVHISTVQGMMRRIYYNDPEKDKPT-VDQYDCIVVDEAHRGYTLDSEMEELELYF 525 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPP 653 R DYVS YR++LD+FDAV+I LTATPALHTV+IFG P+Y Y+YR AV+DG+LID +PP Sbjct: 526 RDHNDYVSKYRQVLDYFDAVRIGLTATPALHTVEIFGSPIYTYSYREAVVDGYLIDHEPP 585 Query: 654 IQIITRNAQEGVYLSKGEQVERI-SPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC 712 QI T+ +EG+ GE+V+ + G++ + +ED+ + +V+ FN+ ++ +FNR V Sbjct: 586 YQINTKLKKEGINWQVGEEVDVYDAKSGDIKKEVMEDEVEIDVSQFNKQVITESFNRTVI 645 Query: 713 NELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDAR 772 EL NY+ P KTL+F + HAD +V L+ + KY +E +A++KITG + Sbjct: 646 KELVNYIHPELEGKTLIFAANDDHADTIVRILKEELENKYGPIEDNAVMKITGSLKNPLQ 705 Query: 773 KVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 ++ F ERLPNIVVTVDLLTTGVD+P IC++VF+R+VRSRILYEQM GRATR C Sbjct: 706 AIKL----FQNERLPNIVVTVDLLTTGVDVPPICSLVFMRRVRSRILYEQMLGRATRRCD 761 Query: 833 EVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFA 892 E++K F IFD V+IY L+ M+PVV +P V ++ LVNE+ +I D + Sbjct: 762 EIDKDHFNIFDAVEIYEALKPYTDMKPVVKKPNVPVKQLVNELE-----QINSTDKQ--- 813 Query: 893 EHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPH 952 ++ +Q+ AK+QR ++ +E + + L G + + ++ Sbjct: 814 KNHIDQIKAKIQRK------SKHWTEEEKENFKAL------TGGKTVDEYIDWMKNSE-- 859 Query: 953 WSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDID---DEVVSVKSLYGDYDTPQDFLE 1009 + E+ N+L + E + I+ + P + I DE +S YG+ + P+D+LE Sbjct: 860 -TEEIVNEL----QKSESIVNYIDENRERPQYQYISNHKDEHLSTTRGYGNAEKPEDYLE 914 Query: 1010 AFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDI 1069 F ++ + N PAL+ V RP++LTR+ L +L+ D+Q + E +L+ AW++ +NEDI Sbjct: 915 GFKQFIEENINHIPALKVVCQRPKELTREDLRKLKIELDQQGYNEKNLQAAWRDAKNEDI 974 Query: 1070 AARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDD 1129 AA +I IR+ VGDAL EERV +A+ RI W Q WL+R+ + L E+ VL Sbjct: 975 AADIISFIRQLTVGDALVSHEERVKNAMKRIYRMKAWPPVQKKWLERIEKQLLEEKVLGP 1034 Query: 1130 D---VFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDE 1168 D F+ F R GG L + FD +D ++ K ++ ++++ Sbjct: 1035 DPEEAFEVQPFKRHGGYKQLNKIFDGQIDMIVEKINEELFNQ 1076 >UniRef50_Q210K0 Type III restriction enzyme, res subunit n=4 Tax=Bacteria RepID=Q210K0_RHOPB Length = 1126 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/1192 (38%), Positives = 659/1192 (55%), Gaps = 96/1192 (8%) Query: 1 MMNKSNFEFLKGVNDFTYA-IACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPC 59 M + +NF FL G +D A + AE+ + DDP T++ K+R F E +K + Sbjct: 1 MRSSANFGFL-GDHDVRLAQLGALAESYFRDDPTTSIFKLRQFAELMSKLIAARHAAYRD 59 Query: 60 ENQ--HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVW 117 E + + LR L + VFH LR+ GN+A H+ +DA L+L +L +W Sbjct: 60 ERESFEETLRRLSFERIIPKEAADVFHALRKSGNRAAHDIAGTQSDALTALKLARQLGIW 119 Query: 118 YYRLVTKDYDFPVPVFVLPER---GENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQ--- 171 ++R K D FV P +E+ L ++L + A Q E E Sbjct: 120 FHRTYGKQPDIAFGAFVPPPEPIDATVALREEIAALGRRLTESEDAAAGAQREAEEHARA 179 Query: 172 ----QQKLVALNGYIAILEGKQQETE---AQTQARLAALEAQLAEKN--AELAKQTEQER 222 +Q+L AI E Q+ E A+ ARLAAL+A +AE A++ + ++ Sbjct: 180 RETLEQRLAREAEERAIWEKLAQDIENEKAEIAARLAALQA-VAEHTPAADILQLVQRAE 238 Query: 223 KAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIA 282 A K ++L E +R LID QLR AGW AD+K LR+S+G RP G N AIA Sbjct: 239 VASSK----------IDLDEATTRALIDQQLRDAGWDADTKALRYSEGVRPSKGRNLAIA 288 Query: 283 EWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRET 342 EWPT + G ADY LF+GL + VVEAKR +V A ++++ RYS Sbjct: 289 EWPT------SSGPADYALFIGLTLVGVVEAKRKRKNVSAAIDQAERYSVGL-------- 334 Query: 343 LLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRD 402 D P W D K+PF ++ NGR Y ++T+SGIW+RD R Sbjct: 335 ---AARADFTFAGGP-----WTD------HKVPFVFAANGRSYLKQLETESGIWFRDTRR 380 Query: 403 TRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVK 462 N +AL W P L +L + P LR YQ+ A+ A+EK + Sbjct: 381 AANHRRALVSWLTPSGLSGLLEVDQDAATDALKTLPFDFGFPLRDYQQAAITAIEKGLEA 440 Query: 463 GQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI-NG 521 ++ +LLAMATGTGKT+ AIAM++RL+ ++RF+R+ F+VDR +LG QA G F T+I +G Sbjct: 441 ERRSMLLAMATGTGKTKLAIAMLYRLLTTKRFRRVCFVVDRSALGIQAAGEFTTTKIVSG 500 Query: 522 DTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL---QSDEPMPVARYDCIVVDEAHR 578 F IF +K L D PE TK+H+ T+Q LVKR L + E PV +YD IV+DE HR Sbjct: 501 KAFADIFGLKKLEDVTPETETKVHICTIQGLVKRVLYAADTSEAPPVDQYDLIVIDECHR 560 Query: 579 GYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTY 638 GY+LD+E ++ EL FR Q DY+S YRR+L++FDAVKI LTATPALHT +IFGEP+++Y+Y Sbjct: 561 GYLLDREMSDAELSFRGQDDYISKYRRVLEYFDAVKIGLTATPALHTTEIFGEPIFKYSY 620 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVAD 697 R AVI+G LID +PP++I T A+ G+ K EQ+E ++ + GEV D+ FEV Sbjct: 621 RDAVIEGHLIDHEPPVRIETALARAGIVFEKDEQLELLNTRTGEVDLAHAPDEIRFEVEQ 680 Query: 698 FNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEH 757 FN+ +V P FNRAV EL ++DP KTL+F T+AHAD+VV +++ AF Y +++ Sbjct: 681 FNKQVVTPDFNRAVAEELAKHIDPALPGKTLIFAATDAHADIVVAKIKDAFAAAYGEIDD 740 Query: 758 DAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 A+ KITG D +VQ +I F E P IVVTVDLLTTG+D+PSI N+VFLR+V SR Sbjct: 741 AAVKKITGSVD----RVQKLIRSFRNEANPKIVVTVDLLTTGIDVPSITNLVFLRRVNSR 796 Query: 818 ILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITD 877 ILYEQM GRATR CP++ K F+IFD VD+Y L+++ M+PVVV P + + LV E+ + Sbjct: 797 ILYEQMIGRATRQCPDIGKEVFRIFDAVDLYPHLQNLTDMKPVVVNPSISFEQLVKELVE 856 Query: 878 SETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGV 937 +E + + E +Q KL+R + K + AAG Sbjct: 857 AEQH--------AHRESIRDQFAVKLRR-------------RLKKLPEEARARFEAAAGE 895 Query: 938 NFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDID---DEVVSV 994 RL E GP A+ + L D + D P F+ I D+VV+V Sbjct: 896 TPEQTLKRLLENGPTEFAKWLSSHSAIGPIL-----DWQSDGDTPRFMPISHHPDQVVAV 950 Query: 995 KSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEE 1054 YG+ P+DFL+ F + V+ + N AL+ V+ RPRDLTR GL +L+ D + F E Sbjct: 951 TRGYGEASKPEDFLDGFSAFVRDNVNTIAALKLVVQRPRDLTRAGLQDLRRALDLKGFSE 1010 Query: 1055 SSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWL 1114 ++LR+AW + +N+DIAA +IG +R+AA+GD L P+ +RV A+ ++ W+ Q WL Sbjct: 1011 ANLRRAWADAKNQDIAASIIGFVRQAALGDPLTPYGDRVRVAMQKVMASRAWTEPQKRWL 1070 Query: 1115 DRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 R+ + + +++V+D F GG L + F L+ +L ++ +W Sbjct: 1071 TRIGEQITKEIVVDRSTIDREPFIADGGFTRLNKVFGGELEAVLAGINEEMW 1122 >UniRef50_B0QS40 Type III restriction enzyme, res subunit n=1 Tax=Haemophilus parasuis 29755 RepID=B0QS40_HAEPR Length = 1121 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/1189 (38%), Positives = 683/1189 (57%), Gaps = 91/1189 (7%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCEN-- 61 ++NF FL+ + A E + +DPNT++ K+R FGE AK + + + EN Sbjct: 2 ETNFSFLQAFPTLFKQVQFA-ERYFSEDPNTSMYKLRQFGEFLAKQIAVRFRLALPENIT 60 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRL 121 Q+D L+ L K +D ILS+FH L+ GN+AVHE D A + ++L++W+ R Sbjct: 61 QNDRLKAL-KECRLDREILSMFHFLKNAGNEAVHEGIEDSQKAITAMIAAWQLSIWFVRT 119 Query: 122 VTKDYDFPVPVFVLPE------RGENLY-HQEVLTLKQQLEQQVREKAQTQAEVEAQQQK 174 + PV P+ ENL + E T QQ EQQ+ VEA Q + Sbjct: 120 FGDNMANFEPVPFCPDYLQAVRNNENLAKYTENPTASQQEEQQL---------VEANQAE 170 Query: 175 LVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAI 234 + A++ ++ ++E + QA A E + A Q + K Y + D+ Sbjct: 171 IQAISTALS------NQSEEEKQAFDVAREKR--------AAQAFERLKNYELRLLDEKQ 216 Query: 235 KRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 R L +ID LR+AGW+ADS+ L + KG RPE G AIAE+P GKD Sbjct: 217 TRLL---------MIDPMLREAGWEADSENLDYRKGVRPEKGRYLAIAEYPVGKDR---- 263 Query: 295 GFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 ADYVLF GL P+A+VEAK+ N++V +++ ++ RY+K F+ + E L + Sbjct: 264 --ADYVLFCGLVPVAIVEAKKANVNVASKVAQAERYAKQFE---ITENLTAPW------- 311 Query: 355 AVPEYETSW-QDTSGKQ--RFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALP 411 + + +W D S F +PF YS NG+ Y SG W+RDVR N+ +AL Sbjct: 312 VLAKRTVAWASDESANDGLHFYVPFVYSCNGKPYLKQQLELSGTWFRDVRQPSNLKRALQ 371 Query: 412 EWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 ++H P+ LLEML + ++ Q + P LGLR YQE A++AVE+ + +G++E+LLAM Sbjct: 372 QFHTPDVLLEMLKKDEEQATQKLENEP-FDFLGLRPYQEKAIQAVEQNLSEGKREMLLAM 430 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSI--F 528 ATGTGKTRT ++ R +++ RF+RILFLVDR +L EQA F + + T N++ F Sbjct: 431 ATGTGKTRTITGLIHRFLKTDRFRRILFLVDRTALAEQAEDTFGGMNVEPNQTLNTLYNF 490 Query: 529 DIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTE 588 + G+ + PE TK+ VATVQSLVK+ S E + ++DCI+VDEAHRGY LD+E T+ Sbjct: 491 AVNGVVE--PE--TKVKVATVQSLVKQIFYSGEAPAIDQFDCIIVDEAHRGYTLDQEMTD 546 Query: 589 GELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLI 648 GEL+F+ Y+S YRR+LD+FDAVKI LTATPALHT +IFGEPV+ Y+Y+ AVID +L+ Sbjct: 547 GELEFQDNEQYLSTYRRVLDYFDAVKIGLTATPALHTKEIFGEPVFVYSYKEAVIDDYLV 606 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERI-SPQGEVINDTLEDDQDFEVADFNRGLVIPAF 707 D +PPI+I T+ Q+G++ +GEQ+E I + GEV+ L D+Q+F+V FNR ++ +F Sbjct: 607 DHEPPIEIKTKLNQDGIHFERGEQLEFIDTSTGEVVLSELADEQNFDVESFNRTVLNDSF 666 Query: 708 NRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYP-QLEHDAIIKITGD 766 N+ VC L +YLDP GS+KTL+FC T+ HAD + L FK+KY + +++ KITG Sbjct: 667 NQVVCEVLLDYLDPFGSEKTLIFCATDLHADKIKGILDTLFKQKYGDEYNTNSVAKITGQ 726 Query: 767 ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 ADK T+I F ER PNI +TVDLL+TG+D+P ICN+VFLR+V+SR+LYEQMKGR Sbjct: 727 ADKP----NTLIKYFKNERYPNIAITVDLLSTGIDVPEICNLVFLRRVKSRVLYEQMKGR 782 Query: 827 ATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEA 886 ATR C + K+ F I+D V + + SVDTM+P+V + LV E+ KI Sbjct: 783 ATRKCEALGKSVFHIYDAVGLCRAMASVDTMKPIVKNVHQPISQLVEEL--QAVGKIENN 840 Query: 887 DGRSFAEHSH---EQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFA 943 EH EQ+ K+ R++ A D+ Q++ + + GV N Sbjct: 841 TNPLANEHQQALLEQISQKIMRLLRKA----DKMAEKSPQMKENLAILEQEWGVKPNLLH 896 Query: 944 SRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDT 1003 L + G + + F K + +L+ + + P+ +DEV + +YG ++ Sbjct: 897 KHLLKIGVQGAVQFFEKHRNILTEFNRLQAMLPS-ERMPVISTHEDEVREITPIYGKGES 955 Query: 1004 PQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKE 1063 D+L+ F +Q+ N A+Q +INRPR+LTR+ L +++ D Q F ++ L KA + Sbjct: 956 ADDYLQEFMVYIQQHSNDNVAIQVIINRPRNLTRQQLKDIELALDAQGFSKAKLNKAMGQ 1015 Query: 1064 TRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKE 1123 N I A ++ HIRRAA+GD+L PFE+RVDHA+ ++ + + Q WL+R+A+ LK+ Sbjct: 1016 KTNRQITAGIVAHIRRAAIGDSLVPFEQRVDHAIEKLCQTHSFKPNQQKWLERIAKQLKQ 1075 Query: 1124 KVVLDDDVFKTGNFHR--RGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 D++ +G + ++ F + LD LL + ++ +W+++ Sbjct: 1076 N---HDEILDRSRLTELFQGQFSGIRAEFGETLDELLAELNEGLWEKMG 1121 >UniRef50_C6CZ63 Type III restriction protein res subunit n=3 Tax=Bacillales RepID=C6CZ63_PAESJ Length = 1083 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/1168 (39%), Positives = 665/1168 (56%), Gaps = 117/1168 (10%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE--NQ 62 NFEFL + + AE N DPNT+LIK+RMFGE K++ + + + Q Sbjct: 3 GNFEFLHDRWEILSDLGEMAERNLFIDPNTSLIKLRMFGETLTKYICAMEEMDETKELTQ 62 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEY-HNDLNDAQMCLRLGFRLAVWYYRL 121 D L +L + + D+I+ H LR+IGN+AVHE + +AQ L FRL+VW+ + Sbjct: 63 VDRLSQLKRDDLISDDIVDYLHTLRKIGNKAVHESGYGSTREAQASTLLAFRLSVWFMQ- 121 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 V D++F P ++ P ++ EV QL+Q R + A++ QQ+L AL Sbjct: 122 VYGDWNFQAPDYIEPVEQQDSAGNEV-----QLDQLARAYEEKMAKL---QQELAAL--- 170 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 +QQ+T T +++K H + + QA L+ Sbjct: 171 ------RQQQTNV-----------------------THEDKKKRHSK-SKQA-GSAFALT 199 Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 E E+R +ID +LR+AGW+ DS+TLR+ G RPE G N AIAEW GFADY L Sbjct: 200 EAETRLIIDEKLRQAGWEVDSQTLRYGLGTRPEKGRNLAIAEWAL------KTGFADYAL 253 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 F GL+ + +VEAKR + +V A + ++ +Y+ ++ H DE+ Sbjct: 254 FCGLELVGIVEAKRISKNVEADIAQAKKYAM---------QVVRH--GDEIIHG------ 296 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 W + +++PF +STNGR Y +K SGIW+ D R N + L W+ P+ L + Sbjct: 297 PWGN------YQVPFLFSTNGRPYLEQLKHMSGIWFLDARKPTNHPRPLQAWYSPQGLKD 350 Query: 422 MLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTA 481 +L + ++ + D + L LR YQEDA+ +VE AI +GQ+ ILLAMATGTGKTR A Sbjct: 351 LLKQDTEQAAKDLQDET-LDYLKLRPYQEDAILSVEGAIDEGQRSILLAMATGTGKTRMA 409 Query: 482 IAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLTDKFPED 540 I +++RLI+ RFKRILFLVDR +LG QA AF+D+++ +F IF+++ L DK P Sbjct: 410 IGLIYRLIKHNRFKRILFLVDRSALGRQAEAAFKDSKLESYHSFTEIFELQTLDDKKPNP 469 Query: 541 STKIHVATVQSLVKRTL--QSDEP-MP-VARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 TK+ +ATVQ +VKR +SDE +P V +YDC++VDEAHRGY LDKE +E EL+FR Sbjct: 470 ETKVQIATVQGMVKRIFYNESDEAEIPSVDQYDCVIVDEAHRGYTLDKEMSELELEFRDH 529 Query: 597 LDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQI 656 DYVS YR++LD+FDA +I LTATPALHTV+IFG PV+ Y+YR AVIDG+LID +PP+Q Sbjct: 530 EDYVSKYRKVLDYFDAFRIGLTATPALHTVEIFGRPVFNYSYREAVIDGYLIDHEPPMQF 589 Query: 657 ITRNAQEGVYLSKGEQVERIS-PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNEL 715 T+ + G+ GE+V G V + L+D+ + EV FN+ ++ FNR + EL Sbjct: 590 ETQLKKHGIKWQVGEEVAVYDISSGNVEKELLQDEINLEVTQFNKTVITENFNRVILEEL 649 Query: 716 TNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQ 775 T Y+DP KTL+F T+ HADMVV + +K Y ++ +A++KITG KD Sbjct: 650 TKYIDPESEGKTLIFAATDDHADMVVRIFKEELEKAYGAVDDNAVLKITGSI-KDPLHT- 707 Query: 776 TMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN 835 I F ERLP+IVVTVDLLTTG+DIPSI N+VFLR+VRSRILYEQM GRATR C E+ Sbjct: 708 --IKLFKNERLPSIVVTVDLLTTGIDIPSITNLVFLRRVRSRILYEQMLGRATRRCDEIG 765 Query: 836 KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHS 895 K F I+D V IY TL+ M+PVV +P V L L +E+ E E G+ Sbjct: 766 KDHFMIYDAVGIYETLKPYTDMKPVVTKPTVSLDVLTSELAQLE----DEGQGKP----H 817 Query: 896 HEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP-HWS 954 +Q++AK+QR + R+ T D+ + G++ F L+ S Sbjct: 818 KDQIIAKMQR--------KKRTWTQKDH----DDFKALSGGMSIEKFIDDLKSMSVLQAS 865 Query: 955 AEVFNKLPGFIARLEKLKTDINNLNDAPIFL-DIDDEVVSVKSLYGDYDTPQDFLEAFDS 1013 A++ K P +A + D N I++ + +D+++S YG+ D P+D+LE F + Sbjct: 866 ADLQTKKP-LVAYI-----DENRGRGHRIYISEHEDKLISTSRGYGNADKPEDYLEGFHA 919 Query: 1014 LVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARL 1073 + + N PAL + RP DLTR L L+ D++ + E L+ AW++ +NEDIAA + Sbjct: 920 FITENLNLIPALTIICTRPNDLTRDELRRLRVELDQKGYSEKMLQAAWRDAKNEDIAADI 979 Query: 1074 IGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLD---DD 1130 I IR+ A+GD L EER++ A+ +I WS Q WL R+ + L ++ VLD + Sbjct: 980 ISFIRQQALGDPLISHEERIEGAMKKIYDMKVWSKVQKDWLKRIEKQLLQESVLDPNPEK 1039 Query: 1131 VFKTGNFHRRGGKAMLQRTFDDNLDTLL 1158 F+ F +GG L + FD +DT++ Sbjct: 1040 AFEVEPFKSKGGYKQLNKIFDGEMDTIV 1067 >UniRef50_C4KDM8 Type III restriction protein res subunit n=4 Tax=Proteobacteria RepID=C4KDM8_THASP Length = 1137 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/1184 (39%), Positives = 646/1184 (54%), Gaps = 84/1184 (7%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNI--PPCENQ 62 SNF LK + + AE + DDPNT L+K+R E A+ + I P E Q Sbjct: 7 SNFGHLKVHDQQLVRLGMLAERYFSDDPNTCLLKLRQLTELLAQLAASKVGIYTSPDEKQ 66 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 DLLR L V + ++F ++R+ GN A H D A + LRL ++L VW++R Sbjct: 67 VDLLRRLQDKGIVPREVGALFAEVRKAGNDANHCLSGDHRTALLGLRLSWQLGVWFHRTF 126 Query: 123 TKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYI 182 KD F F P N E LK +L+ E +Q +A + Q L + I Sbjct: 127 -KDPAFKSGPFQPPAPPAN----ESAELKTELDALRAELSQYRAAQKDAAQALDQIQVQI 181 Query: 183 AILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR-TLNLS 241 E E AA L A+ + K + + +S Sbjct: 182 RQAEDDSAVWETMAAEAEAAKAELLQRLEVLQAQAAAAPPQVIAKFVAAADSAAAVIQIS 241 Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 E ++R LID QL AGW DS + F++G RP+ G N AIAEWPT ETG ADY L Sbjct: 242 EGDTRRLIDQQLALAGWTVDSARITFARGIRPQRGQNLAIAEWPT---ETGP---ADYAL 295 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 F+ L P+A+VEAKR NIDV A L ++ RYS+ F PE E Sbjct: 296 FIDLMPVAIVEAKRKNIDVSAALQQAKRYSRGF-------------------RVSPEVEL 336 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 + F++PF +S+NGR Y + +SG+W+ D+R N+ AL W+ PE L Sbjct: 337 PLSNFGANAEFRVPFVFSSNGRPYLRQLAERSGVWFCDLRRPANLGHALDGWYTPEGLNA 396 Query: 422 MLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTA 481 +L + + + A+ P LR YQ+ A+ A E +I GQ+ ILLAMATGTGKT+T Sbjct: 397 LLQRDDDRAHTELANAPFDFGFPLRPYQQRAILATEASIRDGQRAILLAMATGTGKTKTC 456 Query: 482 IAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLTDKFPED 540 IA+++RL++++RF+RILFLVDR +LGEQA AF+DTR+ TF IF IK L + P+D Sbjct: 457 IALIYRLLKAKRFRRILFLVDRSALGEQAANAFKDTRMERLQTFADIFGIKELEVQAPDD 516 Query: 541 STKIHVATVQSLVKRTLQSDE---PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 T +H+ATVQ +V+R L + P P+ +YDCI+VDE HRGY+LD+E ++ EL FR Sbjct: 517 DTAVHLATVQGMVQRVLYPSDGTPPPPIDQYDCIIVDECHRGYLLDRELSDTELSFRGYD 576 Query: 598 DYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQII 657 DYVS YRR+LD+FDAVK+ LTATPALHT QIFG PV+ Y YR AV+DG+L+D +PPIQ+ Sbjct: 577 DYVSKYRRVLDYFDAVKVGLTATPALHTTQIFGTPVFAYGYREAVVDGYLVDYEPPIQVH 636 Query: 658 TRNAQEGVYLSKGEQVERISPQGEVIN-DTLEDDQDFEVADFNRGLVIPAFNRAVCNELT 716 T + +G+ GE+V+ + + I D+ +V DFNR ++ FN VC L Sbjct: 637 TLLSGQGIAWKAGEEVKVYNTARQQIELFKTPDEIKLKVDDFNRKVITRPFNEVVCTYLA 696 Query: 717 NYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQT 776 LDP +KTL+FCV+++HADMVV+ L+ AF +Y +E DA+IKITG ADK + Sbjct: 697 QELDPASRRKTLIFCVSDSHADMVVDLLKKAFAAQYGAVEDDAVIKITGAADKPLQ---- 752 Query: 777 MITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN- 835 +I R+ ERLPN+ VTVDLLTTGVD+P ICN+VFLR+V SRIL++QM GRATRLC Sbjct: 753 LIRRYKNERLPNVAVTVDLLTTGVDVPEICNLVFLRQVNSRILFDQMLGRATRLCNFGGT 812 Query: 836 --KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAE 893 K +F++FD V I+ + + M+PVVV PK+ L E+ + TE Sbjct: 813 DVKDAFRVFDAVRIFEAIGDMTAMKPVVVNPKITFTQLSQELATLKDESATEL------- 865 Query: 894 HSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHW 953 +Q +AKLQ + DK + + AG++ F +L+ Sbjct: 866 -VRDQFLAKLQ---------AKKRHLTDKNRQDFEA----KAGMSVQAFVQKLK------ 905 Query: 954 SAEVFNKLPGFIARLEKLKTDINNLNDAP---IFL-DIDDEVVSVKSLYGDYDTPQDFLE 1009 A + + + +L ++ +D P +F+ + D + YG P D++ Sbjct: 906 -AMPLADVAAWFVQNPELGELLDRRSDGPEREMFISEHTDAFDRAERGYGKGKKPDDYIR 964 Query: 1010 AFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDI 1069 AF ++ N PAL V+ RPR+LTR L EL D+ F E+SL AW+E N+DI Sbjct: 965 AFSEFIKTQGNQIPALVTVLTRPRELTRAQLRELVLALDQAGFTETSLASAWRELTNQDI 1024 Query: 1070 AARLIGHIRRAAVGDALKPFEERVDHALTRIKGE----NDWSSEQLSWLDRLAQALKEKV 1125 AAR++G+IR+AA+GDAL P+ ERVD AL + WS+ Q WL R+A K V Sbjct: 1025 AARIVGYIRQAAIGDALVPYVERVDRALQHLLAHPPAGKPWSTPQRDWLKRIAAQTKANV 1084 Query: 1126 VLDDDVFKTGN--FHRRGGK-AMLQRTFDDNLDTLLGKFSDYIW 1166 ++D + F R GG L + F+ L +L F+D +W Sbjct: 1085 LVDRSAIDDPDLIFKREGGGFNRLDKVFNGQLQPVLDAFNDALW 1128 >UniRef50_C6JN68 Type I restriction enzyme EcoKI subunit R n=4 Tax=Fusobacterium RepID=C6JN68_FUSVA Length = 1088 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1176 (36%), Positives = 643/1176 (54%), Gaps = 108/1176 (9%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL--LNIPPCENQ 62 +NF+FLK + I AE DPNT +IK+R GE AK + + LN P +Q Sbjct: 3 TNFQFLKKDWNILAKIGEMAEYTLHKDPNTAIIKIRQLGEYIAKSMLKVEKLNEPESGSQ 62 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 D ++ L + ++I ++ +R+ GN AVH + ++A+ L L +L W+ + Sbjct: 63 LDRIKILKTYDLIPEDIENILQLIRKKGNTAVHNMSGNESEAETLLSLVVKLCGWFNEIY 122 Query: 123 TKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYI 182 DY F + V+ K + + + +KL++ Sbjct: 123 GSDYSFN-------------------------SESVQYKKPERVDYKEAYEKLLS----- 152 Query: 183 AILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSE 242 K QE + + + +L+ +T +ER K K+++ L+E Sbjct: 153 -----KVQEEKKKFDELVP----------EQLSFRTSEERIKLIKN------KKSVELTE 191 Query: 243 EESRFLIDAQLRKAGWQADSKTLRF-SKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 EE+R LID QLR AGW+AD+ L + S PE AIAEWP K E G G+ DY L Sbjct: 192 EETRALIDQQLRDAGWEADTIKLNYKSNKTMPEKSRFMAIAEWPCIK-EDGKNGYVDYAL 250 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 F G +EAKR +DV L R S+ + G + +P+ Sbjct: 251 FYGNTLYGTLEAKRKKVDVGNALK---RESRMYSKGVI----------------IPDGIK 291 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 + +K PF +S+NGR Y + KSGIW+ D R +N KAL ++ P +L E Sbjct: 292 LCDEAPFLGEYKAPFMFSSNGRAYNKELIDKSGIWFLDGRRQKNAPKALKGFYSPRDLKE 351 Query: 422 MLGSEPQKQNQWFADNP-----GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 +L + N+ D P S LGLR YQ +AV+AVE+A++KGQ ++LL MATGTG Sbjct: 352 LLAKDEMLANKLLQDEPMEYLKSKSGLGLRNYQIEAVKAVEEALIKGQNKVLLTMATGTG 411 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDIKGLTD 535 KTRTA+A+++RL++S+++ RILF+VDR SLGEQA F++ +++ + I+DIKGL D Sbjct: 412 KTRTALAILYRLLKSKKYNRILFVVDRASLGEQAKDTFDNVKVDQQLKISEIYDIKGLKD 471 Query: 536 KFPEDSTKIHVATVQSLVKRTLQS-DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 K PED+TKIHVATVQ L+KR L S D+ + V +YDCIV+DEAHRGYILD+ TE E F Sbjct: 472 KKPEDTTKIHVATVQGLIKRVLYSNDDAITVGQYDCIVIDEAHRGYILDRIPTEEEAFFN 531 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPI 654 + +Y S YR ++D+F+A KIALTATPA+HT +IFGEPVY+Y+YR AV+DG L+D +PP Sbjct: 532 DEKEYQSKYRSVIDYFEADKIALTATPAVHTYEIFGEPVYQYSYRQAVLDGNLVDFEPPY 591 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGE---VINDTLEDDQDFEVADFNRGLVIPAFNRAV 711 +IITR + +G++ KG +++ + + VI D L+D+ DF+V FN ++ FNRAV Sbjct: 592 RIITRLSSDGIHFEKGSEIKVFDSETQEIKVIKD-LKDELDFDVDKFNTKVITEGFNRAV 650 Query: 712 CNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKK-KYPQLEHDAIIKITGDADKD 770 C+ L NY++P G +KTLVF T+ HADM+V LR F K + + +D I KITG Sbjct: 651 CSALVNYINPEGPEKTLVFAATDEHADMLVRILREEFDKLEMYSMNNDMIEKITG----S 706 Query: 771 ARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL 830 + V +I +F E P I VTVDLLTTG+D+P ICN+VFLRKVRSRILYEQM GRATRL Sbjct: 707 VKDVDKLIKKFKNENYPTIAVTVDLLTTGIDVPKICNLVFLRKVRSRILYEQMIGRATRL 766 Query: 831 CPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRS 890 C E+NK FKI+D VDIYS L+ M+PVV PK+ L+ L+ ++ KI D Sbjct: 767 CEEINKEYFKIYDAVDIYSDLKDYTDMKPVVADPKINLKKLLGDLD-----KIDGNDKN- 820 Query: 891 FAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKG 950 + ++++ ++QR NR + D ++ + + + + L+ Sbjct: 821 -IGYLLDEVIGRIQR-----KKNRIKKAGSD-HLKTFSGYMRGEEISDIDEYIDYLKNTP 873 Query: 951 PHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEA 1010 E K F+ L+ LK + + DE+ +K +G + P+D+LE Sbjct: 874 KEKIYETLMKEKKFLLHLDGLKI----AEKEKVIYEHTDEIKYIKQDFGKAERPEDYLEG 929 Query: 1011 FDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIA 1070 F + S + A++ + P+D + L E+ + D + + +++L A+K+ +NEDI Sbjct: 930 FRKYILNSSDKIEAIKILKKSPQDFKKTDLEEITKILDLEGYSKANLNAAYKQVKNEDIL 989 Query: 1071 ARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDD 1130 A ++ I+ A G + EE+++ + +IK +WS +Q + L+R+ L+ L + Sbjct: 990 ADMLTFIKNAIYGSPIIDREEKINDVMIKIKRLKNWSPKQKTILERIESLLRSDGYLTKE 1049 Query: 1131 VFKTGNFHRR-GGKAMLQRTFDDNLDTLLGKFSDYI 1165 F+ G GG + + + + LD +L S I Sbjct: 1050 DFEGGILKETYGGYSKVDKNLEGMLDEILNVISKEI 1085 >UniRef50_C7GDQ4 Type I restriction-modification system, R subunit n=5 Tax=Bacteria RepID=C7GDQ4_9FIRM Length = 1091 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1186 (34%), Positives = 659/1186 (55%), Gaps = 122/1186 (10%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL--LNIPPCEN 61 KSNF+FL+ C AE DPN+ L+K+ M GE+ + + +P Sbjct: 2 KSNFDFLQSEFPVLSTFGCLAEKYCFSDPNSCLMKLGMIGESIVNLMFTYDRIQLPYDNT 61 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRL 121 + L + + ++ + H LR+ N+AVHE + +++ ++ L + + L W+ + Sbjct: 62 AVTRIDNLQREGLLTRDLTDILHALRKARNKAVHENYESVSECKILLEMAYSLCEWFMQ- 120 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 D+++ FV+P+ L H++V + TQ E A+++++ L Sbjct: 121 TYGDWNYQHHDFVMPK----LEHKKV--------------SVTQEEKAAEEKQVEELT-- 160 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 KQ E +A ++ E Q ++ ++A Q + S Sbjct: 161 ------KQAEQKASMADAISKSERQ--KRAGKMASQRPK--------------------S 192 Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 E E+R++ID QLR+ GW+AD++ LR+SKG RP G N AIAEWPT G G DY L Sbjct: 193 EAETRYIIDEQLRQVGWEADTENLRYSKGTRPAKGHNMAIAEWPTNS-TLGQSGRVDYAL 251 Query: 302 FVGLKPIAVVEAKRNNIDVPARLN-ESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 FV K I V+EAK + D+P+ ++ + Y P + + +Y+ Sbjct: 252 FVDTKLIGVIEAKAIHKDIPSVIDYQGKEY------------------PRNIRKEDSKYK 293 Query: 361 TS-WQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 W + +K+PF ++TNGR Y ++TKSGIW+ D+R+ N AL W P + Sbjct: 294 IGEWGE------YKVPFTFATNGRPYLKQLETKSGIWFLDLRNPVNNPTALHGWMSPMGM 347 Query: 420 LEMLGSEPQKQNQW-------FADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMA 472 +E+L PQ+ N F +P + L LR YQ +A++A E+++++G++ ILLAMA Sbjct: 348 IELLEKNPQEGNSALKALPYDFLTDP--NGLNLREYQLNAIKAAEQSVIEGKKNILLAMA 405 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIK 531 TGTGKTRT + M++R +++ RFKRILFLVDR SLGEQA F++ ++ T + I++IK Sbjct: 406 TGTGKTRTVLGMIYRFLKTNRFKRILFLVDRTSLGEQAADVFKEVKLEDLMTLDEIYNIK 465 Query: 532 GLTDKFPEDSTKIHVATVQSLVKRTLQSD-EPMP-VARYDCIVVDEAHRGYILDKEQTEG 589 G +K + T+I VATVQS+VKR L +D E MP V YD +++DEAHRGYILDKE + Sbjct: 466 GFEEKNIDKETRIQVATVQSMVKRILYNDGEIMPAVTDYDLVIIDEAHRGYILDKEMGDT 525 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLID 649 E+ +R Q DY S YR ++++FDAVKIALTATPAL T +IFG+PV++YTYR AVI+G+L+D Sbjct: 526 EILYRDQRDYQSKYRSVIEYFDAVKIALTATPALQTTEIFGQPVFKYTYREAVIEGYLVD 585 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISP-QGEVIN-DTLEDDQDFEVADFNRGLVIPAF 707 D P + T+ + G++ G+ V P GE+ N + L D+ DF+V FNR ++ F Sbjct: 586 HDAPHHLETKLSTGGIHYKSGDTVMIYDPVTGEITNSELLVDELDFDVEQFNRQVITENF 645 Query: 708 NRAVCNELTNYLDPTGSQ---KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT 764 N+ V +E+ +DP + KTL++ V + HADM+V LR + K + ++AI+KIT Sbjct: 646 NKTVLSEIARDIDPENPEEQGKTLIYAVDDQHADMIVSILRDIYSKY--GVSNEAIMKIT 703 Query: 765 GD-ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQM 823 G + +KVQ I F E P+I VTVDLLTTG+D+P I +VF+R+V+SRIL+EQM Sbjct: 704 GSVGGGNPKKVQEAIKCFKNENYPSIAVTVDLLTTGIDVPEITTLVFMRRVKSRILFEQM 763 Query: 824 KGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKI 883 GRATRLCP+++KT F+I+D V +Y +L V+TM+PVVV P L++ +++ K Sbjct: 764 LGRATRLCPKIHKTHFEIYDPVGVYDSLNDVNTMKPVVVNPTTSFTQLLDGLSEINDDKQ 823 Query: 884 TEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFA 943 T E Q++AKLQR R+ S + +D G + + Sbjct: 824 T--------EQQITQIIAKLQRK------KRNMSP------KMMDYFISMTDGKDPSQLI 863 Query: 944 SRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDT 1003 + + + ++ K +++ K N + + D +DE+ YG+ + Sbjct: 864 MEIEKSDVQEAKKLLFKYRDVFKMMQETKA---NGSRPVVVSDAEDELTEHSRGYGNAEK 920 Query: 1004 PQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKE 1063 P+D+L AF +Q + N AL + RP+DLTRK L +L+ DR+ F L A E Sbjct: 921 PEDYLNAFSRYIQSNQNKIAALNIICTRPKDLTRKDLKDLRLTLDREGFTTQQLNTAIYE 980 Query: 1064 TRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKE 1123 NE+I A +I IRR A+G L E R+ A+ +++ ++++S ++ SW+ R+ + L Sbjct: 981 LTNEEIMADIISLIRRYAIGSTLISHEARIHRAVEKLRKKHNFSKQEQSWISRIEKYLLG 1040 Query: 1124 KVVLDDDVF-KTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDE 1168 + +++ VF + + GG + + F +NL++++ + ++Y++D+ Sbjct: 1041 ESIMNVKVFDEDSRYASYGGFNKINKVFQNNLESIVLELNEYLYDD 1086 >UniRef50_C3WJB8 Type III restriction protein n=2 Tax=Fusobacterium RepID=C3WJB8_9FUSO Length = 1085 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1169 (34%), Positives = 631/1169 (53%), Gaps = 119/1169 (10%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQH- 63 SNF FL+ I AE DPNT ++K+R FGE + + N C+ Sbjct: 3 SNFNFLQNDWQGLAKIGEMAEYILYKDPNTAIMKLRQFGEELINTMIKIENFS-CDKTTL 61 Query: 64 --DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRL 121 D + L + + D+I ++ H LR+ GN+A H + D A+ L L +L W+ + Sbjct: 62 AVDKILILKRAGLIPDDIDNILHSLRKKGNKAAHGAYGDEKTAETLLSLAVKLGAWFQEI 121 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 D F H E + K+ + E + QKLV Sbjct: 122 YGTDMSF---------------HSETIEYKKP----------ENIDYEKEYQKLV----- 151 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 E + Q L ++ N L + E +KA K KR + + Sbjct: 152 ---------ERTDEIQKELEDIKT-----NPHLTTR-EDRKKAISK-------KREIEFT 189 Query: 242 EEESRFLIDAQLRKAGWQADSKTLRF-SKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 EEE+R +ID QL +AGW+ D+K L + + PE N AIAEWP K E G +GFADY Sbjct: 190 EEETRLIIDKQLAEAGWEVDTKVLNYKTNKTLPEKKKNLAIAEWPCIK-ENGRKGFADYA 248 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYR-YSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 LF+G K ++EAKR N D+PA LN R YSK +E + ++ E P Sbjct: 249 LFLGEKLYGILEAKRLNTDIPAALNADSRIYSKG----------VEIFENAQLCEGSPFG 298 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 E +K PF +S+NGR Y + KSGIW+ D R N+ K L ++ P++L Sbjct: 299 E-----------YKAPFLFSSNGRGYNKDLPEKSGIWFLDARKESNLPKVLKGFYSPKDL 347 Query: 420 LEMLGSEPQKQNQWFADNP-----GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 E+L + + NQ + LGLRYYQ+DA+++VE++++ G++++LL MATG Sbjct: 348 KELLEKDDELANQKLKEESFEYLESKFGLGLRYYQKDAIKSVEESLISGKKKVLLTMATG 407 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDIKGL 533 TGKTRTA+ +++RL+++ +FKRILF+VDR LGEQA F+D +I + I+ +KGL Sbjct: 408 TGKTRTALGLIYRLLKTNKFKRILFVVDRTLLGEQAKETFDDVKIEQLLSLGGIYGVKGL 467 Query: 534 TDKFPEDSTKIHVATVQSLVKRTL----QSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 DK + ++H+ATVQSL+KR L + E + V YDCI+VDEAHRGYILD+ E Sbjct: 468 NDKSTDKDERVHIATVQSLIKRILYPNTEEKEKLTVGEYDCIIVDEAHRGYILDRNMKEE 527 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLID 649 + F + D+ S Y+ ++D+FDAVKIALTATPALHT +IFGEPVY Y+ AVIDG+L+D Sbjct: 528 QKDFFDEKDFESKYKAVIDYFDAVKIALTATPALHTQEIFGEPVYSYSCSQAVIDGYLVD 587 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN--DTLEDDQDFEVADFNRGLVIPAF 707 +PP +IIT+ ++EG++ KG V+ + + + + L D+ DF++ FN+ ++ +F Sbjct: 588 VEPPYEIITKLSEEGIHYQKGAMVKVYDVEAQKVKEREVLADELDFDIEKFNKSVITESF 647 Query: 708 NRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDA 767 NR VC+ L +Y++P G +KTL+F ++ HADMVV LR ++K Q D I++ Sbjct: 648 NREVCSALVDYINPEGPEKTLIFTASDEHADMVVRILREEYQK---QAMFDMNIEMIAKM 704 Query: 768 DKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 + V ++ +F E P I VTVDLLTTGVD+P I N+VFLRKV+SRILY QM GRA Sbjct: 705 TGYVKDVDHLVKKFKNEAYPTIGVTVDLLTTGVDVPRITNLVFLRKVKSRILYHQMLGRA 764 Query: 828 TRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEAD 887 TR C E++KTS+K+FD Y ++ M PVV P+++++ L+ DS + + + Sbjct: 765 TRKCDEIDKTSYKVFDAARNYVDMKDFSDMNPVVNNPQIDMEKLL----DSYSKDVPDES 820 Query: 888 GRSFAEHSHEQLVAKLQRIIG-LATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRL 946 + F EQ++A+LQR + ++ E I+ ++ R +E + N + + + Sbjct: 821 KKYFI----EQVIARLQRKKKRIKDLGENKFE-INSKIYRKNEDIK-----NIDDYIEYI 870 Query: 947 REKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQD 1006 + P + K F+ L+ I N I + +DEV +V+ +YG + P+D Sbjct: 871 KNINP----DDMEKEEDFLIFLD----SIQNPKKDRIISEHEDEVRTVRQIYGKNEKPED 922 Query: 1007 FLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRN 1066 +LE F+ ++ + + AL+ + P+ RK L EL+ D ++E+ L A+ + N Sbjct: 923 YLENFEKYIRENQDKVEALKLLKENPKLFKRKDLKELRYILDENGYKETELNSAYGKVEN 982 Query: 1067 EDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVV 1126 +I A ++ +I++ G + EE++ RIK +W+ QL ++++ L+E Sbjct: 983 VNITADILSYIKKVLKGSTILDKEEKIQDIEKRIKRLKNWNPIQLKIIEKIISQLRENSY 1042 Query: 1127 LDDDVFKTGNFHRR-GGKAMLQRTFDDNL 1154 L ++ F +G F GG + + +D L Sbjct: 1043 LTEEDFSSGIFKDNFGGYNKINQKLEDKL 1071 >UniRef50_Q26D94 Type I restriction-modification system, R subunit n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26D94_9BACT Length = 1070 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1183 (34%), Positives = 622/1183 (52%), Gaps = 137/1183 (11%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE-NQH 63 S+F FLK + IA +E DP+++L K R+ E ++ + + Q Sbjct: 2 SHFNFLKDDYPTLFVIAELSEQLIHVDPSSSLSKTRLLAEKMSQLIWDFEQMGDFNGTQL 61 Query: 64 DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLVT 123 D L L + + I +FH +R+ GNQA H + A+ L+ F+L+ W+Y Sbjct: 62 DRLNRLAYSNILPEVIEGIFHTIRKSGNQASHYGTGSFDQAKFILKKTFKLSKWFYETYE 121 Query: 124 KDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIA 183 D+ +P + LP + H+ Sbjct: 122 NDF-LELPAYELPVVVDERAHE-------------------------------------- 142 Query: 184 ILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEE 243 L+G+ E Q Q A +E + K + +++ + A R ++L+E Sbjct: 143 -LQGQLDFLEQQLQDYKAKIEKLNSSKEVQETRKSRSNKSA-----------RNIDLNEH 190 Query: 244 ESR-FLIDAQLRKAGWQADSKTLRF-SKGARPEPGVNKAIAEWPT-GKDETGNQGFADYV 300 ++R LID L+KAGW+ D+ L + + PE G N AIAEW GK +ADY Sbjct: 191 DTRILLIDPALKKAGWEVDTDLLNYKTHKTLPEKGRNMAIAEWYCDGK-------WADYA 243 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LFVG +VEAKR D+ L +S Y++ + E L Sbjct: 244 LFVGTTLYGIVEAKRYRSDISTDLRQSKIYAERVTDAQDIERL----------------- 286 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 +W +K+PF +STNGRE+ +KTKSGIWY D+R N + AL W P+ L+ Sbjct: 287 GNWHG------YKVPFLFSTNGREFLEQLKTKSGIWYLDIRKKDNHAAALKGWFSPQGLV 340 Query: 421 EMLGSEPQKQNQ--------WFADNPGMSELGLRYYQEDAVRAVEKAIVK--GQQEILLA 470 E+ + + N + AD G+S LR YQ DA++ VEK I++ +Q LL Sbjct: 341 ELYERDIDESNDRLEKSDYDYLADKTGLS---LRDYQIDAIKKVEKKIIERPEEQRSLLV 397 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI-NGDTFNSIFD 529 MATGTGKTRT I + +RLI+S RFKRILFL DRR L QA+G ++D +I N +TF ++ Sbjct: 398 MATGTGKTRTVIGLSYRLIKSDRFKRILFLTDRRMLATQAIGNYQDNKIENLNTFADVYQ 457 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 ++ L D P+ T++H ATVQS+VKR +++P+P+ YDCI++DEAHRGY LDKE E Sbjct: 458 LEELKDTTPDGETRLHFATVQSMVKRLFYNEDPLPIDSYDCIIIDEAHRGYNLDKEIDED 517 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLID 649 +L F+ Q DYVS Y++++++F+A I LTATPALHT QIFGEPV+ Y+YR AV+DG LID Sbjct: 518 DLSFKDQDDYVSQYKKVIEYFNAYIIGLTATPALHTTQIFGEPVFSYSYRQAVLDGHLID 577 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND--TLEDDQDFEVADFNRGLVIPAF 707 +PP I T+ EG+ KGE+ + +P+ I + L+D+ FE+ FN+ ++ F Sbjct: 578 YEPPYNIKTKLNSEGIVWKKGERPKAYNPETGKIEELAALDDELKFEIDQFNKLVITEPF 637 Query: 708 NRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDA 767 NRAV +L +DP +KTL+F + HAD++V+ + F ++E I KITG Sbjct: 638 NRAVIKQLVQIIDPESEEKTLIFAARDEHADLIVKIFKEEFDAIGCRVEQGTIEKITG-- 695 Query: 768 DKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 + Q + T+F E+ P I VTVDLLTTG+D+P I N+VFLR+VRSRILYEQM GRA Sbjct: 696 --KSYNPQELTTQFKNEKFPTIAVTVDLLTTGIDVPKITNLVFLRRVRSRILYEQMVGRA 753 Query: 828 TRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEAD 887 TR C E+NK FKI+D V +Y LE +RP V P++ Q L E + D Sbjct: 754 TRKCDEINKEVFKIYDAVRLYEALEDFIQIRP-VSDPRISFQQLAQE--------MEHID 804 Query: 888 GRSFAEHSHEQLVAKLQ-RIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRL 946 A+ ++++AK Q + + +R+ + Q + DEL + A+ + Sbjct: 805 NDDRAQRQMQKIIAKFQVKKRQIEKVDRNEELQYNAQGKTADELLNIFKNAQGSEVATII 864 Query: 947 REKGPHWS--AEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTP 1004 E G W + F + PG + D +DE ++++ +G+ P Sbjct: 865 EEYGSLWKFLDQKFTR-PGM-----------------QMVADQEDEFIAMEQKFGEAQKP 906 Query: 1005 QDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKET 1064 D++E+F+ + N A++ ++ P L R L EL+ D+ F E L AW+++ Sbjct: 907 GDYIESFNHYIATHRNKVLAIKTILTSPNSLDRTSLKELKMMLDQDGFNERYLNAAWRQS 966 Query: 1065 RNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRL-AQALKE 1123 +NEDIAA ++ +IR AA+G+AL E+R+ A ++K ++++ QL WL R AQ L E Sbjct: 967 KNEDIAADIVSYIRTAALGEALVAHEDRIKSAFAKVKQSKNFNALQLKWLTRFEAQMLAE 1026 Query: 1124 KVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 V+ +D+ K F GG + + F + ++ ++ +++++ Sbjct: 1027 TVLTKEDLDKEP-FKSDGGFKRINKQFQEEVEQVIDSINNHLY 1068 >UniRef50_A8YW16 Type I restriction modification system n=1 Tax=Lactobacillus helveticus DPC 4571 RepID=A8YW16_LACH4 Length = 1070 Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust. Identities = 411/1178 (34%), Positives = 619/1178 (52%), Gaps = 172/1178 (14%) Query: 20 IACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE-NQH---DLLRELGKIAFV 75 +A +AE+ DP ++L FGE + + L + E NQ D +R G Sbjct: 17 LASSAESLIFSDPRSSLTVFGTFGEQLTREIMHLDGLGDWELNQKARIDKMRYSGN--GY 74 Query: 76 DDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLA-------VWYYRLVTKDYDF 128 D +L ++RR N A H D Q G L VW + L + + Sbjct: 75 PDAVLLALDEIRRKRNGATH-------DNQFIATKGAALKIDQKAYLVWKWFLESFSLN- 126 Query: 129 PVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGK 188 VP +V P N+ + +K LE+++++ + + ++ Sbjct: 127 DVPEYVTPVDQRNILKSQADKIKA-LEEKIKQLQENRPQIT------------------- 166 Query: 189 QQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFL 248 A+ + R + Q A+K+ L+EEE+R L Sbjct: 167 ---ISAEERTRRRKVNVQFAKKHP---------------------------LNEEETRQL 196 Query: 249 IDAQLRKAGWQADSKTLR-FSKGARPEPGVNKAIAEW--PTGKDETGNQGFADYVLFVGL 305 ID+QLR AGW+AD+ L + P+ G + AIAEW P G+ ADY LF GL Sbjct: 197 IDSQLRNAGWEADTPRLNNWKHQTEPQKGHSMAIAEWVLPNGQR-------ADYALFKGL 249 Query: 306 KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP---EYETS 362 +VEAKR + D+ ++ + Y+K VP +Y Sbjct: 250 DFYGIVEAKRWDQDIAGQMAQPKEYAK----------------------EVPFRSDYHLI 287 Query: 363 WQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL-LE 421 Q+ +K+PF Y+ NGR Y K KSGIW+ D R+ + + AL E+H PE+L L+ Sbjct: 288 GQEMGD---YKVPFIYAANGRPYLEQYKEKSGIWFWDARNPKENAYALEEFHTPEDLALK 344 Query: 422 MLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTA 481 + + N+ AD+ + R YQ DA++++E AI G++ ILLAMATGTGKTRTA Sbjct: 345 LTAKNKDEANKDLADDEDYPQFAARPYQLDAIQSLENAIKDGKKRILLAMATGTGKTRTA 404 Query: 482 IAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDS 541 I++M+RL++ +R +RIL+LVDR SLG Q A +D +I + +SI+ +K L+DK P+ S Sbjct: 405 ISLMYRLLKHKRARRILYLVDRNSLGRQTANAIKDNKIGTMSISSIYGLKELSDKVPDAS 464 Query: 542 TKIHVATVQSLVKRTLQSD---EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLD 598 TKI +ATVQ ++KR +D E V +YD I+VDEAHRGY D+ ++ E + Q + Sbjct: 465 TKIQIATVQGMIKRLFFNDDNSEKPSVGQYDFIIVDEAHRGYAEDRGLSDQEYENYDQEE 524 Query: 599 YVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIIT 658 YVS YRR++D+FDA I +TATPAL T +IFG PVY Y+Y+ AV+DG+L+D D P+ I T Sbjct: 525 YVSQYRRVVDYFDATAIGMTATPALQTTEIFGNPVYSYSYQQAVLDGYLVDHDAPVIIQT 584 Query: 659 RNAQEGVYLSKGEQVERISPQGEVIN-DTLEDDQDFEVADFNRGLVIPAFNRAVCNELT- 716 + A+EG++ KG +V+ + + I+ + L D+ +F++ DFN ++ P+FN+ VC+EL Sbjct: 585 KLAKEGIHFKKGAEVDVFNQDEKTIDKEKLPDNMNFDIKDFNHRVITPSFNKVVCDELVR 644 Query: 717 NYLDPT--GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV 774 NYLDPT KTL+F T+ HADMVV+ L+ AFK ++ DAI KITG R Sbjct: 645 NYLDPTDRDGGKTLIFAATDEHADMVVDLLKKAFKDDGRPVDDDAIEKITG----SIRHP 700 Query: 775 QTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV 834 I F E PNIVVTVDLLTTGVD+P+I NIVFLR+V+SRILYEQM GRATRLCPE+ Sbjct: 701 NQEIRNFKNEDYPNIVVTVDLLTTGVDVPAITNIVFLRRVQSRILYEQMLGRATRLCPEI 760 Query: 835 NKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEH 894 +K F+IFD V IY + V M+PVV P + ++ + D AE Sbjct: 761 HKDKFRIFDAVGIYDAMNKVTNMKPVVQNPGHNVNYFLHH----------KEDYFEIAED 810 Query: 895 SHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQD-----AAGVNFNGFASRLREK 949 SH+ V D + ++++++RLD+ ++ A + + +A +L + Sbjct: 811 SHQYQV--------------DMAGAVERKIKRLDDQGRNKFERLAEIPSVDEWAGKLSKM 856 Query: 950 GPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDT-PQDFL 1008 A+ + P F E+L D + + DEV+ YG + P+D++ Sbjct: 857 S---KADFMKQWPKF----EQL--DQVHPAKKQFISNEQDEVIGTTRGYGQGNNKPEDYI 907 Query: 1009 EAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNED 1068 ++F+ V+ + N PALQ V RP+DLT L +++ ++ F+E+ L+ AWK T++E Sbjct: 908 DSFNKFVKENVNVIPALQIVATRPKDLTFDELKDIKLKLEQNGFKENDLQSAWKTTKHEQ 967 Query: 1069 IAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVL- 1127 A +I IR+AA G L + R+ +A+ ++ G DW+ Q WL R+ L VL Sbjct: 968 TTADIISFIRQAASGSKLVDHDVRIHNAMQKVYGMADWNIMQKKWLKRIENQLLSSTVLG 1027 Query: 1128 -------DDDVFKTGNFHRRGGKAMLQRTFDDNLDTLL 1158 DD+ + F R+GG +++ F D ++ Sbjct: 1028 PDAEHAFDDNFY----FKRQGGYKQIKKIFPKYADQII 1061 >UniRef50_C0XBA4 Type I restriction enzyme EcoKI subunit R n=6 Tax=Bacilli RepID=C0XBA4_9LACO Length = 1086 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 373/987 (37%), Positives = 559/987 (56%), Gaps = 86/987 (8%) Query: 190 QETEAQTQARLAALEAQLAEKNA-ELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFL 248 Q +AQ LEA L +N E++K+ ++R+ + L+E E+R L Sbjct: 159 QVQQAQIDQLKKELEAALNSQNPLEVSKEIREQRRKVSVNFA-----KKHQLTEAETRQL 213 Query: 249 IDAQLRKAGWQADSKTLRFSK-GARPEPGVNKAIAEW--PTGKDETGNQGFADYVLFVGL 305 ID QL++AGW+AD++ L K P+ G N AIAEW P G+ ADY LF GL Sbjct: 214 IDKQLQEAGWEADTEKLNNWKFKTEPKKGHNMAIAEWVLPNGQR-------ADYALFKGL 266 Query: 306 KPIAVVEAKRNNIDVPARLNESYRYSK--CFDNGFLRETLLEHYSPDEVHEAVPEYETSW 363 + +VEAK+ + D+ ++ + YS+ F + +L L+++ D Sbjct: 267 EFYGIVEAKKWDQDIAGQMAQPKEYSREVPFRSDYL---LVDNQMGD------------- 310 Query: 364 QDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL-LEM 422 +K+PF Y+ NGR Y K KSGIW+ D R+ + + AL E+H PE+L L++ Sbjct: 311 --------YKVPFIYTANGRPYLKQYKEKSGIWFWDARNPKENAYALEEFHHPEDLALKL 362 Query: 423 LGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAI 482 P + NQ D+ + R YQ +A++++E+AI G++ ILLAMATGTGKTRTAI Sbjct: 363 TAQNPDEANQDLVDDQDFPKFANRDYQVEAIKSIEEAIKDGKKRILLAMATGTGKTRTAI 422 Query: 483 AMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDST 542 A+M+RL++ +R +RIL+LVDR SLG+Q A +D +I + ++I+ +K L DK P+ ST Sbjct: 423 ALMYRLLKHKRARRILYLVDRNSLGQQTADAIKDNKIGNLSISNIYGVKELKDKLPDAST 482 Query: 543 KIHVATVQSLVKRTLQSD---EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDY 599 KI +ATVQ ++KR +D E V +YD I+VDEAHRGY D+E ++ E +F Q DY Sbjct: 483 KIQIATVQGMIKRLFYNDSNEEKPSVGQYDFIIVDEAHRGYAEDRELSDKEYKFYDQNDY 542 Query: 600 VSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITR 659 VS YRR++D+FDA I +TATPAL T IFG+PVY Y+Y+ AV+D +L+D D P I T+ Sbjct: 543 VSQYRRVVDYFDATAIGMTATPALQTTDIFGQPVYSYSYQQAVLDNYLVDHDAPTIIKTK 602 Query: 660 NAQEGVYLSKGEQVERISPQGEVI-NDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT-N 717 +QEG++ KG + + E I ++ L D+ +FEV DFN+ ++ +FNR VC+ L N Sbjct: 603 LSQEGIHFKKGAGINLFDQESESIRSEKLPDNMNFEVKDFNKRVITESFNRVVCDYLAQN 662 Query: 718 YLDPTGSQ--KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQ 775 L+P + KTL+F T+AHADMVV L+ AFKK +E DAI KITG R Sbjct: 663 CLNPNDPELGKTLIFAATDAHADMVVRLLKEAFKKAGNPVEDDAIEKITG----SIRHPN 718 Query: 776 TMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN 835 I F E+ PNI VTVDLLTTG+D+P I N+VFLR+V+SRILYEQM GRATRLCP ++ Sbjct: 719 NEIKLFKNEKHPNIAVTVDLLTTGIDVPEITNLVFLRRVQSRILYEQMLGRATRLCPGIH 778 Query: 836 KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHS 895 K+ F I+D V IY + V M+PVV ++ V + + I++ +E Sbjct: 779 KSVFNIYDAVGIYDAMNKVTNMKPVVKNVTHDVHYFVKR---KDEFGISD-----ISEQY 830 Query: 896 HEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSA 955 L A + R I + + ++ +D+ +D ++ F + + + Sbjct: 831 QIDLAAAVDRKIKRMNDTKRKDFERLTEIASIDQWARDLIHLDRKEFLDQWK------NI 884 Query: 956 EVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDT-PQDFLEAFDSL 1014 E +KL G T ++DAP DE + + YG+ ++ P+D++E+F+ Sbjct: 885 EQLDKLQG--------NTQKQYISDAP------DEYLGTERGYGEENSNPEDYIESFNKF 930 Query: 1015 VQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLI 1074 V+ N PALQ V RP+DLT L +++ +++ F+E L+ AWK A +I Sbjct: 931 VKEHVNTIPALQIVATRPKDLTYDELKKIKLELEKKGFKEHDLQSAWKSANQVQTTADII 990 Query: 1075 GHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLD---DDV 1131 IR+AA+G L + R+ +A+ ++ G DW+ Q SWL ++ L VL + Sbjct: 991 SFIRQAALGSKLVDHDVRIHNAMQKVYGMADWNMVQKSWLKKIENQLISSTVLGPNAETA 1050 Query: 1132 FKTGNFHRRGGKAMLQRTFDDNLDTLL 1158 F + F R+GG +++ F DN D ++ Sbjct: 1051 FSSNFFKRQGGYKQMRKIFSDNADQII 1077 >UniRef50_A7I737 Type III restriction enzyme, res subunit n=5 Tax=cellular organisms RepID=A7I737_METB6 Length = 893 Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 294/988 (29%), Positives = 456/988 (46%), Gaps = 181/988 (18%) Query: 249 IDAQLRKAGW-----QADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFV 303 ID QLR AGW QA R+S+ A+ E+PT G ADY L + Sbjct: 14 IDPQLRAAGWTIAPYQAGMDLSRYSR---------YALEEFPT------TNGPADYALCL 58 Query: 304 GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSW 363 K +AV+EAK+ + L ++ RY++ SP Sbjct: 59 DGKIVAVIEAKKLTLGPQNVLTQAERYAQGISG-----------SP-------------- 93 Query: 364 QDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEML 423 + SG F++PF YSTNG IWY D+R++ N S + +H P+ L E L Sbjct: 94 FNYSG---FRVPFIYSTNG----------EIIWYHDLRNSLNRSSTVSHFHTPDALAERL 140 Query: 424 GSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIA 483 + + Q + + + +R YQ +A A+E+AI ++++L+AMATGTGKT T + Sbjct: 141 KDKFESSCQHLFEWENVHPM-IRPYQAEANAAIEQAIRDRKRQMLVAMATGTGKTYTMVN 199 Query: 484 MMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRIN-GDTFNSIFDI------------ 530 FRL++S KRILFLVDRR+L QA+ AF G F+ +++ Sbjct: 200 ETFRLMESGVAKRILFLVDRRALAAQAVKAFASFEARPGLKFDKSYEVYSQRFFREDFEE 259 Query: 531 ------KGLTDKF---PEDSTK-IHVATVQSLVKRTL-------QSDEP---------MP 564 K L + P+ ++V T+Q + SDEP +P Sbjct: 260 EEKFDPKVLPSNYLLEPKPGLAFVYVCTIQRMTINLFGRNAVFGSSDEPIDEDAEQMDIP 319 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH 624 + +D I+ DE HRGY ++ S +R+ LDHFDA+KI LTATPA H Sbjct: 320 IHAFDLIIADECHRGYTAAEQ---------------SVWRKTLDHFDAIKIGLTATPAAH 364 Query: 625 TVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERI-SPQGEVI 683 T+ F E VY+Y Y AV +GFL+D D + + + G++L GEQV I + G Sbjct: 365 TMAYFREIVYKYDYARAVREGFLVDYD-AVALDSNVRMNGIFLQAGEQVGVIDASSGAQS 423 Query: 684 NDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-----KTLVFCVTN---- 734 D +ED++ F+ + R + P NR + +E+ Y + + K L+F V + Sbjct: 424 FDNMEDERQFDTTEVERSITSPDSNRKILSEIRKYAEEHEQRFGRFPKILIFAVNDLSHT 483 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAII-KITGDADKDARKVQTMITRFNKERLPNIVVTV 793 +HAD +V+ R F K D+ + KITG D+ + ++ F +P +VVTV Sbjct: 484 SHADQLVDIARDVFGKG------DSFVQKITGKVDRPLQHIR----EFRNRPMPAVVVTV 533 Query: 794 DLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR---LCPEVNKTSFKIFDC-----V 845 D+L+TGVDIP + IVFLR V+SRIL+EQM GR TR CP +K+ F +FDC + Sbjct: 534 DMLSTGVDIPDLEFIVFLRPVKSRILFEQMLGRGTRRGERCP--DKSHFVVFDCFGGTLL 591 Query: 846 DIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQR 905 D + + T P P+ E +++V I D D R +++ LV +LQR Sbjct: 592 DYFRQATGI-TAEP----PEKETRSIVQVIKDV-------WDNRD-RDYNIRVLVRRLQR 638 Query: 906 IIG-LATFNRD--RSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLP 962 I ++ RD + ++R A G +F G + LR ++ P Sbjct: 639 IDKEMSGHARDLFAAYVPLGDLKRYASDLTHALGQDFTGTMTLLRNPA---CQDLLLHYP 695 Query: 963 GFIARLEK-LKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNA 1021 R E+ L N++ I D G P+D+L AF + V+ +P Sbjct: 696 ----RPERSLLVAYENVDTVSSRYLIRDSA-------GHEYKPEDYLTAFSTFVKENPEH 744 Query: 1022 QPALQAVINRPRDLTRKGLVELQEWF--DRQHFEESSLRKAWKETRNEDIAARLIGHIRR 1079 A++ +++RP+D L EL++ R F +L+ A K N+ + +I ++ Sbjct: 745 IEAIRILLDRPKDWGTDALSELKQKLAATRYRFTVENLQMAHKVRYNKAL-VDIISMVKH 803 Query: 1080 AAV-GDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKT-GNF 1137 AA + L E+R+ ++ + EQ WLD++ + L + + D F + F Sbjct: 804 AAREEEPLCTAEQRIHRVFDKMSLATSLTPEQQQWLDKIREHLIANLSISKDDFDSIPIF 863 Query: 1138 HRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 GG R FD L L+ ++++ I Sbjct: 864 ANVGGWGKANRVFDGQLPDLIRQWNEAI 891 >UniRef50_A1BGJ2 Type III restriction enzyme, res subunit n=21 Tax=cellular organisms RepID=A1BGJ2_CHLPD Length = 931 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 269/1025 (26%), Positives = 455/1025 (44%), Gaps = 197/1025 (19%) Query: 237 TLNLSEEE-SRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIA--EWPTGKDETGN 293 +LN + E+ +R +ID QLR AGW K R + V+ IA +PT + G Sbjct: 6 SLNQTPEQIARDVIDVQLRLAGWAVQEKN-------RIDWQVSSGIAVRHYPT---QDGL 55 Query: 294 QGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGF-LRETLLEHYSPDEV 352 + ADYVLFV +P+ V+EAK+ +E + + + F E+ L+H + D Sbjct: 56 E--ADYVLFVDRRPVGVIEAKKE--------DEGHHLTVVEEQSFGYAESKLKHLNND-- 103 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 +PF Y + G R T D RD + S+ + Sbjct: 104 --------------------PLPFVYESTGTLTRFT----------DYRDPKPRSRPVFT 133 Query: 413 WHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMA 472 +HRPE E LG E + + + D PG++ LR Q A+ +E + G+ L+ MA Sbjct: 134 FHRPETFREWLGQERSLRERLY-DIPGLNPAALRECQTMAINNLESSFRDGRPRALIQMA 192 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDT--FNSIFDI 530 TG+GKT AI ++RL++ KRILFLVD R+LGEQA F N D F ++++ Sbjct: 193 TGSGKTFAAITFIYRLLKHADAKRILFLVDTRNLGEQAEQEFRAYTPNDDNRKFVELYNV 252 Query: 531 KGLTDKFPEDSTKIHVATVQSL------------------VKRTLQSDEPMPVAR----- 567 + L +++ + T+Q L +++ Q EP+PVA Sbjct: 253 QRLQSSSIAGDSQVCITTIQRLYSILKGEELDASLEEQNPAEKSWQPKEPVPVAYNAKVP 312 Query: 568 ---YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH 624 +D IV+DE HR + ++++LD+FDA I LTATP Sbjct: 313 IEFFDFIVIDECHRS-------------------IYNLWKQVLDYFDAFLIGLTATPDKR 353 Query: 625 TVQIFGEP-VYRYTYRTAVIDGFLIDQDP-PIQI-ITRNA---QEGVYLSKGEQVERISP 678 T F E V Y++ AV DG + D I+ ITRN + ++ K E++ R Sbjct: 354 TFGFFNENIVSEYSHERAVADGVNVGYDVYTIETEITRNGSRIRAREFIDKREKLSRRKR 413 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL-----DPTGSQKTLVFCVT 733 + LEDD + + +R +V P+ R V + L T KTLVF T Sbjct: 414 W-----EQLEDDVVYTSSQLDRDVVNPSQIRNVIRAFRDALPVLFPGRTEVPKTLVFAKT 468 Query: 734 NAHADMVVEELRAAFKKKYPQLEHDAII-KITGDADKDARKVQTMITRFNKERLPNIVVT 792 ++HAD +++ +R F E +A KIT A+ D + +++ RF E P I VT Sbjct: 469 DSHADDIIQIIREEFN------EGNAFCNKITYKAEDDPK---SLLARFRNEYNPRIAVT 519 Query: 793 VDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR---------LCPEVN--KTSFKI 841 VD++ TG D+ + ++F+R VRS +EQMKGR TR + P V KT F I Sbjct: 520 VDMIATGTDVKPLECLLFMRDVRSSNYFEQMKGRGTRTLSFDDLKKVTPSVTSAKTHFVI 579 Query: 842 FDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEIT----DSETY------------KITE 885 D V + +L++ RP+ +P L+ L+ +T D + Y +ITE Sbjct: 580 IDAVGVTKSLKT--DSRPLERKPTASLKELLEAVTFGAQDEDLYTSLANRLARLDKQITE 637 Query: 886 ADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASR 945 + +F + + + + ++ R + L +++ D +I+++ R ++ G + +G + Sbjct: 638 QERAAFIDKTGGKSINQVVREL-LDSWDPD---SINRKAREMNPEAVQEMGESPSGETTM 693 Query: 946 LREKGP----HWSAEVFN-KLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD 1000 E+ H + FN L FI + ++ I + + D+V + Sbjct: 694 FLEQAQQALLHEARLTFNGSLNEFIDTVRRVHEQIIDTVNL-------DQVTRSEWAAES 746 Query: 1001 YDTPQDFLEAFDSLVQRSPNAQPALQAVINRP---RDLTRKGLVELQEWF--DRQHFEES 1055 + + + F + ++ + AL N+P R+LT + + E+ + DR Sbjct: 747 GEKAAELIGEFKAYLEAHKDEITALGIFYNQPYRRRELTFRMIREVLDRLKADRPMLAPM 806 Query: 1056 SLRKAWKET--------RNEDIAARLIGHIRR-AAVGDALKPFEERVDH-----ALTRIK 1101 + A+++ +NE IA L+ IRR + L ++ VD +R Sbjct: 807 RIWHAYEQIEKVNGSSPKNELIA--LVALIRRVTGIDPVLTVYDRTVDANFKQWVFSRHS 864 Query: 1102 GEND-WSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGK 1160 D ++ EQ++WL + + + + ++ D F GG+ + + F D +D ++ + Sbjct: 865 DAGDKFTEEQMNWLRMIKEHIASSIHMEQDDLDLTPFDAYGGRGRMWQLFGDRMDGIIDE 924 Query: 1161 FSDYI 1165 ++ + Sbjct: 925 LNEAL 929 >UniRef50_UPI0001B4DA31 type III restriction enzyme, res subunit n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B4DA31 Length = 1196 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 259/946 (27%), Positives = 393/946 (41%), Gaps = 202/946 (21%) Query: 3 NKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP-PCEN 61 SNF L + C+AE+ DP+ ++K R+FGE +HL LL + P Sbjct: 23 GSSNFGHLLRHEPLLVTLGCSAESYVHSDPHAAMVKARLFGEVMTRHLVTLLGLTVPGSR 82 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRL 121 Q D + L + + + + F +R GN+A HEY+ ++ +A + L FRL W +R Sbjct: 83 QVDRINALVRADVLVPQVKAWFEAVRTTGNKAAHEYYANVREALQSVELCFRLGDWLHRS 142 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKL----VA 177 + + D VF+ P E + +++LEQ + E++A ++KL ++ Sbjct: 143 LDQS-DTTHRVFLAPAPPSAPPAPESVADQRELEQ-------LRTELDAYRRKLEEARLS 194 Query: 178 LNGYIAILEGKQQETEAQTQARLAA---------LEAQLAEKNAELAKQTEQERKAYHKE 228 +G + LE +Q E A L A+L+EK EL + R A Sbjct: 195 YDGKQSRLEREQAAREQAEAELARAEAERAALHDLIAELSEKITELTAPAMESRSAARP- 253 Query: 229 ITDQAIKR-----------TLNLSEEESRFLIDAQLRKAGW--QADSKTLRFSKGARPEP 275 D A +R +SE + R +D L KAGW Q DS F+ Sbjct: 254 -LDGASRRDEFIAHAQKAARPPMSEAQVRAELDRILEKAGWVVQDDSAKNLFA------- 305 Query: 276 GVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFD 335 G A+ E T G ADY+L+V + + V+EAKR D+ A + ++ RY+ Sbjct: 306 GKGVAVREVSTAV------GRADYLLYVDQRLVGVIEAKREGADLEAAMEQAARYA---- 355 Query: 336 NGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGI 395 G R L ++W R +PF Y +G R Sbjct: 356 TGLTRSQQL----------------SAW-------RASLPFRYVADGNTVR--------- 383 Query: 396 WYRDVRDTRNMSKALPEWHRPEEL---LEMLGSEP---------QKQNQWFADNPGMSEL 443 + + D ++ + HRP+ + +E ++P ++ Q F D Sbjct: 384 -FHNALDPSPRTREVFAVHRPDTIARWIEEAETDPTAPTLRARMRRLPQTFLDAKD---- 438 Query: 444 GLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDR 503 LR QE A+ +E ++ K L+ MATG GKT T ++ +RL++ KRILFLVDR Sbjct: 439 -LRPAQEKAINGLELSLAKDDPRALIQMATGAGKTYTVVSESYRLLKHAGAKRILFLVDR 497 Query: 504 RSLGEQALGAFE--DTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQ----SLVKRTL 557 +LG QA FE DT +G F ++ ++ L S + V+TVQ +L R + Sbjct: 498 NNLGSQAATEFENFDTPDDGRKFTELYVVQRLAGDTVLGSAHVVVSTVQRLWLALTGRPV 557 Query: 558 QS--------------DEPMPVA--------RYDCIVVDEAHRGYILDKEQTEGELQFRS 595 S DEP+ V +D IVVDE HR Sbjct: 558 PSADSEDEALDRYDLIDEPVQVGYNPDLAPESFDLIVVDECHRSIY-------------- 603 Query: 596 QLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEP-VYRYTYRTAVIDGFLIDQDPPI 654 +R +L++FDA + LTATP T F + V Y Y AV D +D D Sbjct: 604 -----GKWRAVLEYFDAHLVGLTATPVKQTFGFFFQNLVSEYPYEQAVADRVNVDFD-VF 657 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGEVIN-----DTLEDDQDFEVADFNR--------G 701 +I T + G + E + P E LE+D +++ + R Sbjct: 658 RIRTELGENGGTIP----AETVVPMRERKTRRERYQELEEDLEWKASQLGRQVISKGQLK 713 Query: 702 LVIPAFNRAVCNELTNYLDPTG----------SQKTLVFCVTNAHADMVVEELRAAFKKK 751 LV+ F + T+ P G + KTL+F V + HAD +V+ +R F + Sbjct: 714 LVVETFREHL---FTDIFPPVGEGEAQRSRTTAPKTLIFAVDDNHADEIVDMVRQVFGEC 770 Query: 752 YPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFL 811 D KIT A + A +I F I VTVD++ TG DIP + + FL Sbjct: 771 -----DDFCRKITHAAKRPAE----LIKAFRNSPELRIAVTVDMIATGTDIPPLECVFFL 821 Query: 812 RKVRSRILYEQMKGRATR---------LCPEVN-KTSFKIFDCVDI 847 R V+S +EQMKGR +R + P+ K F I D V + Sbjct: 822 RDVKSWAYFEQMKGRGSRTVDPAEFQAVTPDAEVKERFVIVDAVGV 867 >UniRef50_Q0W4T5 Type I restriction modification system, restriction subunit n=2 Tax=cellular organisms RepID=Q0W4T5_UNCMA Length = 922 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 243/1011 (24%), Positives = 433/1011 (42%), Gaps = 187/1011 (18%) Query: 242 EEESRFLIDAQLRKAGWQA-DSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E E+R ID L AGW+ D L G PG+ A+ E+ T + G ADY+ Sbjct: 10 EREARKNIDRLLEAAGWKVQDHDKLDLGAG----PGI--AVREF------TLDNGEADYL 57 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LFV K + V+EAK + ++ +Y NG + + + + +P Sbjct: 58 LFVDRKAVGVIEAKPEGTTLSGVAEQTQKYL----NG-IPKCIGQVKNP----------- 101 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 PF Y + G E ++RD+RD S+++ +HRPE + Sbjct: 102 --------------PFAYESTGVE----------TYFRDMRDPDARSRSIFAFHRPETIR 137 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 E L E +++ + P + GLR Q +A+ +EK+ + + L+ MATG+GKT T Sbjct: 138 EWLSDEETLRSR-LKNLPPLRTEGLRDCQTEAITKLEKSFAESRPRALIQMATGSGKTFT 196 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFED--TRINGDTFNSIFDIKGLTDKFP 538 +++ ++RLI+ K+ILFLVDR +LG Q L F+ T +G F +++++ LT Sbjct: 197 SVSFIYRLIKHAHAKKILFLVDRSNLGRQTLREFQQYTTPDDGRKFTDLYNVQHLTSNSI 256 Query: 539 EDSTKIHVATVQSLVK---------------------------RTLQSDEPMPVARYDCI 571 + +K+ + T+Q L + + + +P+ +D I Sbjct: 257 DPVSKVCITTIQRLYSMLRGEAEFEEGNEERSGFDTGVTDERPKEVAYNPNIPIEEFDFI 316 Query: 572 VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGE 631 VVDE HR +R+ L +FDA + LTATP+ T+ F + Sbjct: 317 VVDECHRS-------------------IYHVWRQALLYFDAFIVGLTATPSKQTIGFFNK 357 Query: 632 P-VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP-QGEVINDTLED 689 V Y + AV DG + + +I T ++G + GE V++ S + ++ L++ Sbjct: 358 NLVMEYNHERAVADGVNVGYE-VYRIKTEITEKGSKIEAGEYVDKRSKLTRQKRHEMLDE 416 Query: 690 DQDFEVADFNRGLVIPAFNRAVC----NELTNYLDPTGSQ--KTLVFCVTNAHADMVVEE 743 + ++ +R +V P R V + L + P + KTLVF ++HA+ +V Sbjct: 417 ELVYDPNRLDRDVVAPDQIRTVIRTFRDRLFTEIFPGRKEVPKTLVFAKDDSHAEDIVNI 476 Query: 744 LRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIP 803 +R F + + TG+ K + ++ F P I VTVD+++TG DI Sbjct: 477 IREEFAAGN-EFCKKITYRTTGE------KPEELLQSFRNSYYPRIAVTVDMISTGTDIK 529 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEVN----------KTSFKIFDCVDIYSTLES 853 + ++F+R VRS + +EQMKGR TR + KT F I D V + + Sbjct: 530 PLECLIFMRNVRSGVYFEQMKGRGTRTISPTDLKAVSSDAHHKTHFVIVDAVGVCER-DK 588 Query: 854 VDTMRPVVVRPKVELQTLVNEIT----DSETY-----KITEADGRSFAEHSHEQL----- 899 D+ RP+ + V + L+ I D +T ++T D R E +++ Sbjct: 589 TDS-RPLERKKSVAFKDLLYSIAVGKRDEDTITSLISRLTRLD-REIGEKERKEIENVSG 646 Query: 900 VAKLQRIIG--LATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEV 957 +L+ II + + D E KQ+ + D ++ + +E + + Sbjct: 647 GVQLKTIINKLVDAIDADSQEARAKQMFKTDSPTREQ--------LEKAKEALTDEACKP 698 Query: 958 FNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQR 1017 F+K P L ++KT + D D ++S G + + + +F ++ Sbjct: 699 FDK-PALRDTLVEVKTRSEQIIDEGSI----DNLISAGFDDGAKEKARAVVTSFKEFIEA 753 Query: 1018 SPNAQPALQAVINRP---RDLTRKGLVELQE--------------WFDRQHFEESSLRKA 1060 + + ALQ + ++P R L K + +L E W + E S ++ A Sbjct: 754 NKDELTALQIIYSQPYAKRHLAFKDIKDLAEAIQKPPRNLTPERVWQAYEILERSKVKGA 813 Query: 1061 WKETRNEDIAARLIGHIR-RAAVGDALKPFEERVDHALTRIKGEND-----WSSEQLSWL 1114 + + +I +R D L+PF E VD + E + +++EQ+ WL Sbjct: 814 GAQK----LLTNIISLVRFTEGQSDVLEPFPETVDSRFRKWVEEQEKLGRKFTAEQMEWL 869 Query: 1115 DRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 + + + + + + + + F ++GG R F L+ +L + ++ + Sbjct: 870 NMIKEHIGASLEISVEDLELTPFDQKGGPVRAYRVFGSELNWMLEELNEVL 920 >UniRef50_C3QTD9 Type I restriction enzyme EcoKI R protein n=3 Tax=Bacteroidales RepID=C3QTD9_9BACE Length = 905 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 179/637 (28%), Positives = 296/637 (46%), Gaps = 139/637 (21%) Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 EE++R +ID L AGW+ + P V+ E K GN+ ADY+L Sbjct: 4 EEKARIIIDRMLNDAGWEVVDRN-------HYSPEVSAIAVEEGLLK---GNRE-ADYLL 52 Query: 302 FVGLKPIAVVEAKRNNIDVPARL--NESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 F+ K + V+EAK+ ++ + + + +++ +Y++ VP + Sbjct: 53 FLNGKAVGVLEAKKESVSIYSEIVADQAEKYTR----------------------GVPHW 90 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 +W + +P Y +NGRE + +RD R+ + +L + H P+E+ Sbjct: 91 CQAWMN-------PLPLVYLSNGRE----------LLFRDTREVDSEYISLNKIHSPKEI 133 Query: 420 LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTR 479 +++LG + FA P + GLR Q +A+ +E + G L+ +ATG GKT Sbjct: 134 VKLLGLKDD-----FAGLPTLKRKGLRDCQYEAITKLENSFRSGHDRALMVLATGAGKTY 188 Query: 480 TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI--NGDTFNSIFDIKGL-TDK 536 TA +RL+ KR+LFLVDR +LG+QA G F R+ NGD FN+IF ++ L T K Sbjct: 189 TACLAAYRLLAFTSMKRVLFLVDRNNLGKQAEGEFGTFRLTENGDPFNTIFGVERLKTAK 248 Query: 537 FPEDSTKIHVATVQSL-------------------VKRTLQSDEP----MPVARYDCIVV 573 P D+ + +AT+Q L V T + P +P +D I++ Sbjct: 249 IPNDANVV-IATIQRLFSLLSGDDFIDDDNEADYVVDGTRNMNLPVHPNLPPDYFDLIII 307 Query: 574 DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-IALTATPALHTVQIFGEP 632 DE HR ++R +L++F + K I LTATPA+ T+ F Sbjct: 308 DECHRS-------------------IYGSWRSVLEYFSSAKMIGLTATPAVETLAFFNNN 348 Query: 633 -VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP-QGEVINDTLEDD 690 + YT +++DG +D +I T+ ++G + +G+ V +I+ G+ N ++ Sbjct: 349 LIVNYTLEKSIVDGVNVDYR-VFRIKTQVTEDGGAIREGDIVRKITRYTGKTENIETQET 407 Query: 691 QDFEVADFNRGLVIPA--------FNRAVCNELTNYLDPTGS------QKTLVFCVTNAH 736 + + NR ++ PA + +V E+ N DP KTL+F + +AH Sbjct: 408 TTYTRRELNRSIINPAQIKLILETYRDSVYTEMFN--DPQREPNFDYLPKTLIFALNDAH 465 Query: 737 ADMVVEELRAAFKKKYPQLEHDAII-KIT---GDADKDARKVQTMITRFNKERLPNIVVT 792 A +V+ + F + E D + KIT GD+++ +I F ++ I VT Sbjct: 466 ASNIVKIAKEVFGR-----EDDTFVQKITYSAGDSNE-------LIRHFRNDKDFRIAVT 513 Query: 793 VDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 V L+ TG D+ + ++F+R V S LY QMKGR R Sbjct: 514 VTLVATGTDVKPLEVVMFMRDVESDSLYTQMKGRGVR 550 >UniRef50_C6Q0A8 Type III restriction protein res subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q0A8_9CLOT Length = 1102 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 240/906 (26%), Positives = 383/906 (42%), Gaps = 205/906 (22%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPP--CENQ 62 SNF FL + AE+ D N T++KMRMFGE + L I Q Sbjct: 2 SNFSFLNKKWTILAKLGTQAESYLNTDNNATMLKMRMFGEKIIDLMLAALRIETDRFATQ 61 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 D ++ L + ++ I +F +RR GN+A H+ + + DA CL +++A W+Y V Sbjct: 62 DDKIKLL-RTTNINKAIPDLFDIVRRFGNKANHDGYENKKDALECLISMYKVAAWFYIRV 120 Query: 123 TKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYI 182 TKD F +P+ + K+ + Y Sbjct: 121 TKDDSIRPLTFKIPK------------------------------ATVPKAKVYDIEAYA 150 Query: 183 AILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSE 242 E ++E + QA + E+ +L QTE+++K ++ ++ TL L+E Sbjct: 151 EEKEKIKEEHIKEVQA--------VKEEAPKLV-QTEEDKK------IEKEVETTLELNE 195 Query: 243 EESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGNQGFADYV 300 E+R LID L AGW ++K E P E G G+ADYV Sbjct: 196 AETRRKLIDIMLNDAGWNVNNK--------------ESVKIELPLENHKEKGKTGYADYV 241 Query: 301 LF-VGLKPIAVVEAKRNNID-VPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 LF KP+AVVEAK+ ++D + R +AV E Sbjct: 242 LFDKKGKPLAVVEAKKTSVDAIVGR-----------------------------QQAV-E 271 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 Y S + GK+ P + TNG E I+ D D + + + ++ E+ Sbjct: 272 YAGSIERLYGKR----PIVFYTNGYE----------IYMWD--DMHSEPRQVWGFYTLED 315 Query: 419 LLEMLGSEPQKQ--NQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 L E+ K+ N+ D + R YQ + ++ V + GQ++ LL MATGTG Sbjct: 316 LEELFFKHKYKKDLNKVNID----KNIAGRPYQIEGIKRVYERYQNGQRKALLVMATGTG 371 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK 536 KTRT IA+ L+++ KR+LFL DR L +QA + + ++F + F + ++ + Sbjct: 372 KTRTVIALTKGLMEASWAKRVLFLADRDELVKQA-------KEDKNSFKT-FMPEQISCR 423 Query: 537 FPEDST-----KIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGEL 591 F ++ ++ +T Q++V + V +D I+ DE+HR Sbjct: 424 FTGKNSDNREATLYFSTYQTMVNYYRE----FSVGFFDLIICDESHRSV----------- 468 Query: 592 QFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVI 643 YR IL++FD+ + LTATP +T +F G+P + ++ A Sbjct: 469 --------YKVYRDILEYFDSHIVGLTATPVNFIERNTFSLFSCEDGDPTFNFSVEDA-- 518 Query: 644 DGFLIDQDPPIQIITRNAQEGV-YLSKG--------EQVERISPQG----EVINDTLEDD 690 + PP I R +L KG EQ +++ +G E+ D E + Sbjct: 519 ----WNHVPPYLIEPRVIDATTDFLRKGIKYNEMTEEQRQQVDEEGYDGQEINYDKKELE 574 Query: 691 QDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKK 750 + D NR ++ R + + D G KT++F HA++ L + F + Sbjct: 575 KKITNKDTNRYIL-----RTLMEQGIKVGDYIG--KTIIFAKNKKHANL----LDSLFNE 623 Query: 751 KYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVF 810 YPQ + K+T + + +I F + P I ++VDLL TG+DIP I N+VF Sbjct: 624 LYPQYKG----KLTAVIYSEIKDKSVLIENFKDKDFPRIAISVDLLDTGIDIPEIVNLVF 679 Query: 811 LRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFDCVDIYSTLESVDTMRPVVVRPK 865 + V S++ + QM GR TR C + +K F IFDC + E M P PK Sbjct: 680 AKPVYSKVKFWQMIGRGTRRCDNLFGEGQDKKEFAIFDCYKNFEFFE----MHPKGYEPK 735 Query: 866 VELQTL 871 + +L Sbjct: 736 PQKTSL 741 >UniRef50_B5YGZ8 Type I site-specific deoxyribonuclease n=6 Tax=Bacteria RepID=B5YGZ8_THEYD Length = 916 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 248/1027 (24%), Positives = 443/1027 (43%), Gaps = 219/1027 (21%) Query: 242 EEESRFLIDAQLRKAGWQA-DSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E+++R ID L KAGW D + + S GV A+ E+P ++G ADY+ Sbjct: 4 EQQARERIDNLLEKAGWVVQDYRRVNLSDSL----GV--AVREFPL------SEGIADYL 51 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LFV P+ V+EAK + ++ +Y N +LE Sbjct: 52 LFVNRVPVGVIEAKPEGTTLSGVAEQTAKYILNPTNNL--PIILE--------------- 94 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 +PF Y + G E ++R+++D S+ + +H+P+ LL Sbjct: 95 ------------TLPFAYESTGTE----------TFFRNLKDPEPRSRRVFAFHQPKTLL 132 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 E + + + P + GLR Q +A++ +EK++ + + L+ MA+G GKT T Sbjct: 133 EWFNEKDTLRGR-LKKMPPLYTQGLRECQIEAIKNLEKSLSEDRPRALIQMASGGGKTFT 191 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFED--TRINGDTFNSIFDIKGLTDKFP 538 A++ ++RLI+ +R+LFLVDR +LG Q F+ T +G F +++I+ LT Sbjct: 192 AVSFIYRLIKFANARRVLFLVDRSNLGRQTRNEFQQYITPDDGRKFTELYNIQHLTSNTI 251 Query: 539 EDSTKIHVATVQ---SLVKRTLQ---------------SDEP--------MPVARYDCIV 572 + +++ + T+Q S++K + +DEP +P+ +D IV Sbjct: 252 DPVSRVCITTIQRLYSMLKGETEFSPELEEFSGFEYPSADEPKEISYNPQIPIETFDFIV 311 Query: 573 VDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEP 632 DE HR +R++L++FDA I LTATP+ T+ F + Sbjct: 312 TDECHRS-------------------IYHIWRQVLEYFDAYIIGLTATPSKQTLGFFNQN 352 Query: 633 -VYRYTYRTAVIDGFLIDQDP---PIQIITRNA--QEGVYLSKGEQVERISPQGEVINDT 686 V Y++ AV DG + D +I + + + G Y+ K +++ R ++ + Sbjct: 353 LVMEYSHERAVADGVNVGYDVYRIKTEITEKGSKVEAGFYVDKRDKLTR-----QLRWEQ 407 Query: 687 LEDDQDFEVADFNRGLVIPAFNRAVCN----ELTNYLDP--TGSQKTLVFCVTNAHADMV 740 L++D ++ + +R +V P R + +L L P T KTL+F ++HA+ + Sbjct: 408 LDEDLEYTPSQLDRDIVAPDQIRTIIKTFKEKLFTELFPGRTEVPKTLIFAKDDSHAEDI 467 Query: 741 VEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGV 800 V +R F K +D KIT K + +I F P I VTVD+++TG Sbjct: 468 VHIVREEFGKG-----NDFCKKITYRT--TGEKPEDLIVSFRNSYNPRIAVTVDMISTGT 520 Query: 801 DIPSICNIVFLRKVRSRILYEQMKGRATR-LCPE---------VNKTSFKIFDCVDIYST 850 DI + ++F+R V+SR+ +EQMKGR TR + P+ ++KT F I D V + Sbjct: 521 DIRPLECLIFMRDVKSRVYFEQMKGRGTRVISPDDLQAVTPDALHKTHFIIVDAVGVCEN 580 Query: 851 LESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLA 910 + D+ RP+ + + L++ + A G E + LVA+L ++ Sbjct: 581 -DKTDS-RPLERKRSIPFDKLIHSV----------ALGNR-DEDTLSSLVARLSKL---- 623 Query: 911 TFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRL-----REKGPHWSAEVFNKLPGFI 965 DR E +K R ++ L A G +RL +K + E+FN Sbjct: 624 ----DR-ELNEKDRREIEAL---AGGRKIKEIINRLIDAIDPDKKIEKAKEIFNTDN--- 672 Query: 966 ARLEKLKTDINNLNDAP-----------IFLDI---DDEVVSVKS-----LYGDYDTPQD 1006 E++K + NL D I + I +++++ S L G D+ ++ Sbjct: 673 PSNEQIKNALENLVDEACKPFDNPDLREILITIKKRNEQIIDTISKDRVILAGFDDSAKE 732 Query: 1007 ----FLEAFDSLVQRSPNAQPALQAVINRP---RDLTRKGLVELQE-------------- 1045 ++ F ++ + + A++ + +P R +T + + L + Sbjct: 733 KAKTIIDTFKRFIEENKDELIAIELLYKKPYGRRHITYEEIKRLADAIQKPPYYLTTELV 792 Query: 1046 WFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDA--LKPFEERVDHALT----- 1098 W + E S ++KA + DI + L R +G L+PF E V+ + Sbjct: 793 WKAYEQLERSKVKKAGPQRLLTDIISLL-----RFTLGSTEFLEPFPEIVEERFSDWLRE 847 Query: 1099 RIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLL 1158 + + ++ EQL WL + + ++ + F F+ +GG F D +L Sbjct: 848 QQRSGKTFTPEQLEWLTMIKDHIATSCSIELEDFDYAPFYEKGGLMRFHYLFGTESDIIL 907 Query: 1159 GKFSDYI 1165 + ++ + Sbjct: 908 EELNEVL 914 >UniRef50_A6W081 Type III restriction protein res subunit n=3 Tax=Gammaproteobacteria RepID=A6W081_MARMS Length = 1133 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 238/899 (26%), Positives = 384/899 (42%), Gaps = 218/899 (24%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP--P 58 M NFEFL+ N+ +A AE DP + L ++R F E K + +P P Sbjct: 6 FMKSQNFEFLRPENEALANLAGLAEAVLFIDPGSALTRLRAFAEELTKAIYKEERLPRLP 65 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 + ++R+ V ++ + LR GN+ H DL A M L + +LA + Sbjct: 66 ESTLNTMVRDTVFQNCVTKPLVHQLNYLRTQGNETAHGGEGDLRTALMALGIAHQLACY- 124 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKL--V 176 L K Y +++KA A V+ + + + Sbjct: 125 --LAIKYY-------------------------------MKKKASIPAFVDIKDNRADAI 151 Query: 177 ALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERK---------AYHK 227 AL+G I + + E Q +L N EL +Q E+ER AY Sbjct: 152 ALSGSI-----NKYKEELDKQKKL----------NDELLEQIEKERTKNLKYLDAPAYPD 196 Query: 228 EIT----DQAIKRTLNLSEEESR-FLIDAQLRKAGWQ-ADSKTLRFSKGARPEPGVNKAI 281 ++ QAI +L +E ++R LID+ L +AGW +D + + V A Sbjct: 197 QLKRQQESQAIADSLQWNEAKTRELLIDSMLVQAGWNVSDPENVGIE--------VEVAF 248 Query: 282 AEWPTGKDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLR 340 P+GK G+ DYVL+ KP+AVVEAKR Sbjct: 249 PNNPSGK------GYVDYVLWGSDGKPLAVVEAKR------------------------- 277 Query: 341 ETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDV 400 S + +A E + D+ KQ + P + TNG E + IW D Sbjct: 278 -------SSNSSDQAGREQARLYADSLEKQFGQRPVIFYTNGYE--------TFIW-DDA 321 Query: 401 RDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI 460 + N + + ++ + L ++ + NQ +NP ++ + R YQ +A+++V Sbjct: 322 Q--YNAPRIVYGFYSKDSLDYLIYQRQYRDNQLEQNNPNLN-IADRLYQINAIKSVAHTF 378 Query: 461 VKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRIN 520 + +++ L+ ATGTGKTR +IA+ ++ + KR+LFL DR+ L QA AF++ + Sbjct: 379 QEQRRKALIIQATGTGKTRVSIALADLMLNAGWAKRVLFLCDRKELRTQASEAFKNN-LP 437 Query: 521 GDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGY 580 + I G T+K E++ +I+V+T ++ R Q D V +D I+ DE+HR Sbjct: 438 SEPRCEI----GETNKIDENA-RIYVSTYPGMMNRFAQLD----VGFFDLIIADESHRS- 487 Query: 581 ILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFG----EP 632 + YR I D+FDA+++ LTATP + +T +FG +P Sbjct: 488 ------------------IYNRYRDIFDYFDALQVGLTATPVKFISRNTFDMFGCETTDP 529 Query: 633 VYRYTYRTAVIDGFLIDQDPPI-------QIITRNAQEGVYLSKGEQVERISPQGEVIND 685 Y++ + A I+ +PP + T ++G++ + ++ +D Sbjct: 530 TYQFGLKEA------IEHEPPYLVDFKVKDVTTEFLRDGIHYN------------DLTDD 571 Query: 686 ---TLEDDQDFEVA--------DFNRGLVIPAFNRAVCNELTNY--LDPTGS--QKTLVF 730 LEDD F+ A D R + ++ + L NY D T S KT+VF Sbjct: 572 QKRQLEDDLGFDEAQNASYQGKDIGRKIFSEKTDQEILENLMNYGIKDETNSLVGKTIVF 631 Query: 731 CVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNK-ERLPNI 789 HA E L F K YPQ + K+ V+++I F K + I Sbjct: 632 ANNQKHA----EHLEKLFCKLYPQYGN----KVCKVIHNKVSHVESLIKEFKKGDNEFRI 683 Query: 790 VVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFD 843 ++VD+L TG+D+P + N+VF + V+S + + QM GR TRLC + +KT F IFD Sbjct: 684 AISVDMLDTGIDVPEVVNLVFAKTVKSSVKFWQMIGRGTRLCKNLFGKGKDKTEFLIFD 742 >UniRef50_C7D879 Type I restriction enzyme, R protein n=1 Tax=Thalassiobium sp. R2A62 RepID=C7D879_9RHOB Length = 1131 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 224/800 (28%), Positives = 342/800 (42%), Gaps = 187/800 (23%) Query: 90 GNQAVHEYHNDLN--DAQMCLRLGFRLAVWYYR-LVTKDYDFPVPVFVLPERGENLYHQE 146 GN+A H+ L DA +R F + W R T P F L Sbjct: 90 GNRAAHDSGKPLTAKDAAATVRELFHVCYWIARTYATGPKPDPALTFDL----------- 138 Query: 147 VLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQ 206 +LE+ + A T A+++ + + A N A E E ++ L A+EA+ Sbjct: 139 -----AKLEKSLTISASTVAQIQNIEADVKAANKRAADAE----EARKSSEDGLKAVEAE 189 Query: 207 LAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESR-FLIDAQLRKAGWQADSKTL 265 LA+ AE+A +QAI + E E+R ID L +AGW D Sbjct: 190 LAQLRAEVAATKN----------ANQAIPDDHDYGEAETRDAFIDLLLHEAGWPLDQTRD 239 Query: 266 RFSKGARPEPGVNKAIAEWPT-GKDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPAR 323 R E+P G GF DYVL+ KP+AV+EAKR D Sbjct: 240 R----------------EFPVKGMPNQSGDGFVDYVLWGDDGKPLAVIEAKRTKKDSRTG 283 Query: 324 LNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGR 383 ++ Y+ C + + R P ++TNG Sbjct: 284 QQQAKLYADCLEAQYGRR---------------------------------PVMFTTNGY 310 Query: 384 EYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSE- 442 E+ W D D + + + + + EL E+L ++ N D+ + E Sbjct: 311 EH----------WLWD--DAQYPPRPVSGFLKKAEL-ELL--HQRRGNVKPLDDVKIDED 355 Query: 443 LGLRYYQEDAVRAVEKAIVK-GQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLV 501 + R+YQ+ A+R V +A K Q++ LL MATG+GKTRT IA++ +L+++ R KR+LFL Sbjct: 356 IAGRFYQQRAIRRVGEAFEKHAQRKALLVMATGSGKTRTVIALIDQLMRANRVKRVLFLA 415 Query: 502 DRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVA-----TVQSLVKRT 556 DR +L +QA GAF+ T ++ ++ + D D + V T+ L+++ Sbjct: 416 DRIALVKQAHGAFK-THLSATPSANLLERH---DPKKNDHSGARVCMSTYPTMMGLIEQM 471 Query: 557 LQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIA 616 + +D IV+DEAHR +R YR I ++FD + + Sbjct: 472 KGGQKQFGPGHFDMIVIDEAHRSV------------YRK-------YRAIFEYFDCLLVG 512 Query: 617 LTATPALH----TVQIFGE----PVYRYTYRTAVIDGFLIDQDPP--IQIITRNAQEGVY 666 LTATP T +FG P Y AV DGFL+ PP I + + +EG+ Sbjct: 513 LTATPREEIDKDTYSLFGLEKGIPTDSYDLDDAVSDGFLV---PPKTISVPLKFQREGIA 569 Query: 667 ---LSKGEQVERISPQGEVINDTLEDDQDFEVAD------FNRGLVIPAFNRAVCNELTN 717 LS EQ E D LE D++ V D N+ L FN +++ Sbjct: 570 YDQLSDDEQEEW---------DALEWDEEGNVPDRVESGELNKWL----FNEDTVDKVLE 616 Query: 718 YLDPTGSQ--------KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADK 769 +L G + KT++F N HA +++ F YP + + I D Sbjct: 617 HLMRNGIKVDGGDRLGKTIIFAKGNKHAQFIIDR----FNANYPHYKGEFAKLI----DY 668 Query: 770 DARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 Q++I F+ K++ P+I V+VD+L TG+D+P + N+VF + VRS+ + QM GR T Sbjct: 669 SVTYTQSLIDDFSEKDKAPHIAVSVDMLDTGIDVPEVVNLVFFKVVRSKTKFWQMVGRGT 728 Query: 829 RLCPEV-----NKTSFKIFD 843 RLCP + +K F IFD Sbjct: 729 RLCPNLFGPDEDKDEFVIFD 748 >UniRef50_D0SUQ0 Predicted protein n=5 Tax=Moraxellaceae RepID=D0SUQ0_ACILW Length = 1147 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 225/809 (27%), Positives = 352/809 (43%), Gaps = 187/809 (23%) Query: 86 LRRIGNQAVH-EYHNDLNDAQMCLRLG--FRLAVWYYRLV-TKDYDFPVPVFVLPERGEN 141 +R +GN AVH + L + + F + VW+ R + D V P+ N Sbjct: 86 IRMVGNSAVHGKKFKQLTTEETVKHISHLFLIYVWFERTYGSPTKDRSQAVLFNPKLIPN 145 Query: 142 L-YHQEVLTLKQQLEQQVR----EKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQT 196 Q V K+QL+Q+V+ E A+ + ++QKL+ L+ A LE +++ Sbjct: 146 ADTTQPVTANKEQLQQEVKAFDKEFAEQHKALREREQKLLELS---ASLEEREK------ 196 Query: 197 QARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFL-IDAQLRK 255 LA ++A LA+K +Q EQ + A K ++ + E+E+R L ID L + Sbjct: 197 --LLANIDADLAQKR----QQVEQAKLANSK------VQDHTDYKEDETRKLKIDLLLEE 244 Query: 256 AGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLF--VGLKPIAVVEA 313 AGW+ AR E V TG T +G DYVL+ GL P+A+VEA Sbjct: 245 AGWE-------IGVTAREEVPV--------TGMPSTSGKGSVDYVLYDANGL-PLALVEA 288 Query: 314 KRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFK 373 KR ++D ++ Y+ C + +Q + Sbjct: 289 KRTSVDPEVGQQQAKLYADCLE---------------------------------QQTGQ 315 Query: 374 IPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQW 433 P + TNG R IW DV+ + + ++ EL ++ E +K N Sbjct: 316 RPVIFYTNGYRTR--------IW-NDVQG--GPPRLVHGFYTQAELKRLI--ERRKNNPD 362 Query: 434 FADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQR 493 P + + RYYQ A++A+ A + ++ LL MATGTGKTRTAIA++ L+++ Sbjct: 363 LGSFPINANIVERYYQTRAIKAMLAAFQRKERAGLLIMATGTGKTRTAIALVDVLMKANV 422 Query: 494 FKRILFLVDRRSLGEQALGAF-------------EDTRINGDTFNSIFD-IKGLTDKFPE 539 +++LFL DR SL QA AF E NG + S + + GL D+ Sbjct: 423 VQKVLFLADRTSLVVQATNAFKANLPDSAPVNLVESKTQNGRVYLSTYQTMMGLIDEMNA 482 Query: 540 DSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDY 599 D T+ + +D I+VDEAHR Q GE Sbjct: 483 DGTRKY------------------GTGMFDLIIVDEAHRSVY----QKFGE--------- 511 Query: 600 VSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFLIDQD 651 I +FD++ + LTATP T +F G P Y A+ DG+L+ Sbjct: 512 ------IFKYFDSLLVGLTATPRDEVDRDTYALFGLESGVPTDYYDLNQAIADGYLV--- 562 Query: 652 PP--IQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 PP + + +EGV + + E++ E+ D + + + N+ L FN Sbjct: 563 PPKAYSVPLKFMREGVKYDELSEEEKLH-WDELDWDGGDAPDEVTASKINKEL----FNT 617 Query: 710 AVCNELTNYLDPTGSQ--------KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 +++ +L G + KT++F V HA+ + E F K YP + Sbjct: 618 GTVDKMLQHLMENGIKVEGGDMLGKTIIFAVNQNHANFIAER----FDKNYPHYDGKFAR 673 Query: 762 KITGDADKDARKVQTMITRFNKERL--PNIVVTVDLLTTGVDIPSICNIVFLRKVRSRIL 819 IT + Q++I F+K+ L P I ++VD+L TG+D+P + N+VF + VRS++ Sbjct: 674 VIT----HSTKYAQSLIDSFSKKDLADPQIAISVDMLDTGIDVPEVVNLVFFKAVRSKVK 729 Query: 820 YEQMKGRATRLC-----PEVNKTSFKIFD 843 + QM GR TRLC PE++K F IFD Sbjct: 730 FTQMIGRGTRLCKDLFAPEMDKKEFYIFD 758 >UniRef50_A0KWT8 Type III restriction enzyme, res subunit n=7 Tax=Gammaproteobacteria RepID=A0KWT8_SHESA Length = 1138 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 228/885 (25%), Positives = 375/885 (42%), Gaps = 181/885 (20%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP--P 58 M NFEFL+ AE DP + LIK+R + E + LN+P P Sbjct: 1 MKQSMNFEFLRKNWPELADFGAYAEEYAFSDPQSALIKLRSYSEYIVNFIYQKLNLPCLP 60 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 + H+ L + +L FH ++ +GN+A HE NDA ++ +L W+ Sbjct: 61 KASFHEKLVGEDFVQLASSAVLDKFHLIKTLGNKAAHENKGASNDALFAVKQSHQLGTWF 120 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLT---LKQQLEQQVREKAQTQAEVEAQQQKL 175 Y VP F+ E E E LT LK++LEQ Q AE+E Q Sbjct: 121 YCSYHNLQACTVPAFI--ELSE-----EFLTTSKLKKKLEQSDALYQQAMAELERQ---- 169 Query: 176 VALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITD-QAI 234 RL + A K A K T + T+ Q + Sbjct: 170 -----------------------RLVNEQMFAAAKQATAVKDT----PVFEAFATNSQLL 202 Query: 235 KRTLNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGN 293 +LN +E E+R +LID +LR GW+ + + G + PT TG Sbjct: 203 SSSLNFNEAETRKYLIDMELRDIGWEVSK-----DNKSTDQVGQEVEVKHQPTN---TG- 253 Query: 294 QGFADYVLFV--GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDE 351 G+ DYVL+ GL P+AVVEAK+ + D ++ Y+ + + + ++ + + + Sbjct: 254 IGYVDYVLWDDDGL-PLAVVEAKKTSKDARIGKKQAKDYADALEKHYGQRPVIFYTNGHD 312 Query: 352 VHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALP 411 ++ W D G KI YS + ++ L Sbjct: 313 IY--------IWDDAQGYPPRKIYGFYSKSSLQH------------------------LV 340 Query: 412 EWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 ++ R E+ + D +E+ R YQ + + V + +++ L+ Sbjct: 341 KFQRIEK-------------KKLTDVAIDTEVAGRRYQLETISRVHETFELKRRKALVVQ 387 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD-I 530 ATGTGKTR +IA+ L+ ++ KRILFL DR+ L +QA AF F + + Sbjct: 388 ATGTGKTRVSIALAKSLMDAKWVKRILFLCDRKELRKQADKAFVQ-------FLGVKPYV 440 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 G +DK +D+ ++ +AT ++ E V +D I+ DE+HR Sbjct: 441 VGKSDKKYKDTARVFIATYPGMMGIY----EDFDVGYFDLIIADESHRSI---------- 486 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFG----EPVYRYTYRTAV 642 + + + +FD +++ LTATP + T +F EP Y A+ Sbjct: 487 ---------YNVFGNLFKYFDCLQVGLTATPVEMVSRSTCNLFDCDYKEPTANYPLEKAI 537 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKG--------EQVERISPQGEVINDTLEDDQDFE 694 +G L+ P +I+T + ++ +G EQ+ + QGE N+ +FE Sbjct: 538 GEGHLV----PFEIVTMTTK---FMREGMNQRSLSDEQIAELEAQGEDPNEF-----EFE 585 Query: 695 VADFNRGLVIPAFNRAVC-NELTNYLDPTGSQ---KTLVFCVTNAHADMVVEELRAAFKK 750 A+ + ++ NR + N + N + +Q K+++F HA + L+ F + Sbjct: 586 SAEIDNAVLNKDTNRKILRNLMENGIKDKDNQLIGKSIIFARKINHARL----LKELFDE 641 Query: 751 KYPQLEHDAIIKITGDADK-DARKVQTMITRFNKER---LPN---IVVTVDLLTTGVDIP 803 YP+L I + + +A Q IT K + LP+ + ++VD+L TG+D+P Sbjct: 642 MYPELSQGFCEVIHSEEPRAEALIDQFKITEEEKAKDSSLPDPITLAISVDMLDTGIDVP 701 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFD 843 S+ N+VF + V+S++ + QM GR TRLC ++ +KT F IFD Sbjct: 702 SVVNLVFAKPVKSKVKFWQMIGRGTRLCEDLFGKGKHKTRFLIFD 746 >UniRef50_UPI000050FFCE type III restriction enzyme, res subunit n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FFCE Length = 1135 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 238/896 (26%), Positives = 371/896 (41%), Gaps = 165/896 (18%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQHD 64 +NFEF++ + + AE+ DP + I R E HL +LN+P + D Sbjct: 2 TNFEFIRAEWPTIFTDSARAESYVFSDPRSACIYSRRSIERLVIHLYTILNLP-TPYKDD 60 Query: 65 LLRELGKIAFVDDNILSVFHKL---RRIGNQAVHEYHND----LNDAQMCLRLGFRLAVW 117 L + F + + KL R++GN AVH ND ++ A L + + +W Sbjct: 61 LSARINDPKFKAATGIGIHQKLTFLRKLGNNAVH---NDTPVPVDAAIRALSELYLVIIW 117 Query: 118 YYRLVTKDYDFPVPVFV-----LPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQ 172 ++ D VP + +R L E+ L + +QQ E A Q ++ Sbjct: 118 AAFHHSRIPD-SVPAGTQFDPKIAKRAAPLSPAELAKLVDKFKQQDEELAAAQKQL---- 172 Query: 173 QKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQ 232 E A A++AA A + EL +Q + + + Q Sbjct: 173 -----------------AEISADVDAQIAAATADKDSQIEELQRQVAAAQSSKVTTLDSQ 215 Query: 233 AIKRTLNLSEEESRF-LIDAQLRKAGWQADSKTLR-FSKGARPEPGVNKAIAEWPTGKDE 290 K E+ +R LID L AGW D +R F P P Sbjct: 216 EWK------EDRTRTDLIDVDLELAGWNLDEPNVREFRISGLPTPS-------------- 255 Query: 291 TGNQGFADYVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSP 349 G+ADYVL+ KP+AVVEAKR + V A ++ Y+ + F R ++ +S Sbjct: 256 --GVGYADYVLWGTDGKPLAVVEAKRTSASVEAGRRQAEMYADGIEKAFGRRPVI-FFSN 312 Query: 350 DEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKA 409 + H+ W DT G +I Y+ + E +T VR Sbjct: 313 GDRHQL-------WDDTGGYPPREIHGFYTRDELELLIQRRTTR------VR-------- 351 Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILL 469 P S++ R YQ + V + Q+E LL Sbjct: 352 ------------------------LEGRPVNSDIVNRGYQRQIIAQVGRDFDDRQREALL 387 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 MATG+GKTRTAIA++ +L+++ KR+LFL DRR+L +QA G F N T N Sbjct: 388 VMATGSGKTRTAIALVDQLMKANWVKRVLFLADRRALVKQAAGEFTAHLPNVTTVN---- 443 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM-PVARYDCIVVDEAHRGYILDKEQTE 588 + TDK S ++ V+T +++ + D+ + +D +++DEAHR Sbjct: 444 LLDTTDK-DNASGRVFVSTYPTMMGLIDKGDDTVFGPGYFDLVIIDEAHRSV-------- 494 Query: 589 GELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRT 640 +R Y+ I D FD++ + LTATP +T +F G P YT Sbjct: 495 ----YRK-------YKAIFDWFDSLLLGLTATPKDEIDRNTFNLFHIENGVPTGAYTLEQ 543 Query: 641 AVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS-PQGEVINDTLEDDQDFEVAD-- 697 A+ D +L + I + T+ +EG++ + ++ R + E + T+ DD + Sbjct: 544 AIRDKYLTEPR-EINLGTKFLEEGIHYADLDEEARTDWDELEWEDGTIPDDVHATALNNY 602 Query: 698 -FNRGLVIPAFNRAVCNEL-TNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQL 755 FN V ++ + + L D G K+++F HAD + + F YP Sbjct: 603 LFNADTVDIVIDKLMSDGLKIESGDKLG--KSIIFAQNQRHADFIQQR----FDIHYPAH 656 Query: 756 EHDAIIKITGDADKDARKVQTMITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKV 814 IT D Q +I +F + + P I ++VD+L TG+DIP I N+V +KV Sbjct: 657 AGKFARVITHQTD----SAQDLIEKFKDPNQHPQIAISVDMLDTGIDIPEILNLVLFKKV 712 Query: 815 RSRILYEQMKGRATRLCPEV-----NKTSFKIFD-CVDIYSTLESVDTMRPVVVRP 864 RS+ + QM GR TRL P++ +KT F +FD C + E D P V P Sbjct: 713 RSKSKFWQMIGRGTRLSPDIFGPGHDKTEFYVFDFCANFEYFNEQFDKAEPRQVLP 768 >UniRef50_D1C5W5 Type III restriction protein res subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5W5_SPHTD Length = 947 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 199/706 (28%), Positives = 300/706 (42%), Gaps = 150/706 (21%) Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 E +R IDA L KAGW + AR GV A+ E P G ADY+L Sbjct: 5 ETRARADIDAALDKAGWAVQDRYAVNLAAAR---GV--AVREVPLKP----GHGVADYLL 55 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 FV + V+EAKR + ++ +Y +P+Y Sbjct: 56 FVDGLAVGVIEAKRVGTTLTGVEPQTAKYGA----------------------GLPDY-- 91 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 DT K +PF Y + E R T +G+ D S+ + +HRPE L Sbjct: 92 --LDTLVK---PLPFLYQSTSIETRFT----NGL------DPEPRSRRVFSFHRPETLAA 136 Query: 422 MLGSEPQKQNQWFADNPGMSELGLRY-----------------------YQEDAVRAVEK 458 + P Q + +E RY QE AVR +E+ Sbjct: 137 WISGTPPAQAAVASPILRAAEDPARYQAVTTLRARLQKMPRLDPGRLWPAQEQAVRNLER 196 Query: 459 AIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTR 518 ++ + L+ M G+GKT TAI ++RLI+ +RILFLVDR +LG QA F D Sbjct: 197 SLADDRPRALIQMTMGSGKTYTAITAIYRLIKYADAQRILFLVDRANLGTQAKKEF-DAY 255 Query: 519 INGD---TFNSIFDIKGLTDKFPEDSTKIHVATVQ---SLVKRTLQSD------------ 560 + D TF +++++ L + + ++ + T+Q S++K + D Sbjct: 256 VPPDDRRTFTQLYNVQHLKTNRIDPTARVVITTIQRLYSILKGEPELDPSLEEGSHFDTA 315 Query: 561 -----EPMPVA--------RYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRIL 607 EP+PV +D IV+DE HR + +R++L Sbjct: 316 SGLVPEPVPVVYNPDVPIETFDFIVIDECHRS-------------------IYNLWRQVL 356 Query: 608 DHFDAVKIALTATPALHTVQIFGEP-VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVY 666 ++FDA I LTATP+ T F + V Y+Y AV DG +D D +I TR + G Sbjct: 357 EYFDAYLIGLTATPSKQTFGFFNQNLVMEYSYPQAVADGVNVDHD-IYRIRTRITESGST 415 Query: 667 LSKGEQVERISPQGEVIN-DTLEDDQDFEVADFNRGLVIPAFNRAVC----NELTNYLDP 721 + G VE+ + L++D ++ AD +R +V P R V + L + P Sbjct: 416 IEAGMYVEKRDRLTRAARWEQLDEDLAYDAADLDRAVVAPDQIRTVIRTFRDRLFTEIFP 475 Query: 722 TGSQ--KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMIT 779 S KTL++ +AHA+ +V+ +R F K +D KIT + + +I Sbjct: 476 GRSHVPKTLIYAKDDAHAEEIVQIVREEFGKG-----NDFCQKIT--YKTTGVRPEDLIQ 528 Query: 780 RFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN---- 835 F P I VTVD++ TG DI I ++F+R V+SR +EQMKGR R+ E Sbjct: 529 SFRISYNPRIAVTVDMIATGTDIKPIEIVMFMRAVKSRTFFEQMKGRGVRVIDETEFKAV 588 Query: 836 ------KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEI 875 KT F + DCV + + S P+ P V +TL+ + Sbjct: 589 TPDAERKTRFVLIDCVGVTERMLSDSP--PLERAPTVSFETLLQRV 632 >UniRef50_C7P6A6 Type I site-specific deoxyribonuclease n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P6A6_METFA Length = 816 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 180/601 (29%), Positives = 287/601 (47%), Gaps = 137/601 (22%) Query: 296 FADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 FAD VL V + VVE KR D+PA D G P + A Sbjct: 54 FADIVLKVNNIIVGVVEVKRE--DIPA------------DKGL----------PQAIDYA 89 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 +R +P Y+TNG+E I+ R + T + L Sbjct: 90 --------------KRLDVPIAYTTNGKEI--------IIYDRRIPKTERVDNFL----S 123 Query: 416 PEELLEML----GSEPQKQNQW---FADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEIL 468 P+EL ++ G E + + + ++P LR YQE A++ V +A++KGQ+ IL Sbjct: 124 PKELYQIYKEWKGLEDKNLSPLEYPYYNDPTKK---LRSYQETAIKRVIEAMLKGQKRIL 180 Query: 469 LAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIF 528 L MATGTGKT T+ ++++LI+S R+LFL DR L +QA A+E + G F Sbjct: 181 LTMATGTGKTFTSFQIVWKLIKSGFISRVLFLTDRIFLRDQAYEAYEPFK--GARF---- 234 Query: 529 DIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTE 588 K + KF ++ +I+ +T Q+L +P +D I++DE HR Sbjct: 235 --KIESGKFNKNR-QIYFSTYQTLYTDNFYKQ--IPEDFFDLIIIDECHR---------- 279 Query: 589 GELQFRSQLDYVSAYRR---ILDHF-DAVKIALTATP----ALHTVQIFGEPVYRYTYRT 640 S Y R I++HF DA + +TATP + + FGEPV+ Y+ Sbjct: 280 ------------SRYGRWGEIVEHFKDAYHLGMTATPRREDNIDVYEYFGEPVFEYSLAQ 327 Query: 641 AVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQV---ERISPQGEVINDTLEDDQDFEV-A 696 A+ DG+L+ +I+T EG+ +S+ E++ + I+P E+ +DF + + Sbjct: 328 AIEDGYLVPYK-IYKILTNIDIEGLDISQAEEIIYDDEINP---------ENLKDFYLPS 377 Query: 697 DFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQL 755 +F R + +P R +C +L N ++ T + KT++FCV HA++V K QL Sbjct: 378 EFERTISLPDRTRKMCEKLLNIMNKTDKKAKTIIFCVDTEHAEIV--------KNTINQL 429 Query: 756 EHDA--IIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 ++ +KI + D I R ++ P + TVDLL+TGVDIP + NIVF+R Sbjct: 430 TNNENFAVKIVHEDKNDLE-----IFRDSESNYPIVATTVDLLSTGVDIPDVKNIVFMRP 484 Query: 814 VRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVN 873 + SR+L++Q+ GR +RL NK F+I D + ++ D +P PK++++ + Sbjct: 485 ISSRVLFKQIIGRGSRLAN--NKGFFRIIDFTNATRLIDEWDIPKP----PKLKVEEIPE 538 Query: 874 E 874 E Sbjct: 539 E 539 >UniRef50_B9M295 Type III restriction protein res subunit n=2 Tax=Proteobacteria RepID=B9M295_GEOSF Length = 908 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 172/601 (28%), Positives = 266/601 (44%), Gaps = 123/601 (20%) Query: 248 LIDAQLRKAGWQADSKTLR---FSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFV- 303 +ID QL +AGW S+ + + A +P +W G GFADY L Sbjct: 12 MIDQQLARAGWGVKSRAVVEEFLIRVAEDDP-------KW------HGQHGFADYALLGR 58 Query: 304 GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSW 363 KPIA+VEAKR D A ++ Y+ + F + Sbjct: 59 DGKPIAIVEAKRTGRDALAGKRQAADYADQIKSQFSHD---------------------- 96 Query: 364 QDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEML 423 PF + TNG+E W RD R ++ + LE L Sbjct: 97 -----------PFIFLTNGKEIH--------FWDRDRYPPRKIAGFYTR-----DDLERL 132 Query: 424 GSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIA 483 + +K Q D + R YQ +A+R V + + +++ LL MATGTGKTRT IA Sbjct: 133 QHQ-RKYAQPLHDITISPTIAGRDYQNEAIRRVTEGVDAAKRKFLLVMATGTGKTRTTIA 191 Query: 484 MMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTK 543 ++ L++++R +R+LFL DRR L QA+ F+ N S+ I+G + Sbjct: 192 LVDTLLRAKRVQRVLFLADRRELVRQAMAEFKSHLPN----ESLARIEGGETS----GAR 243 Query: 544 IHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAY 603 I AT S+ +Q + V YD I+ DE+HR Y Sbjct: 244 IQFATYPSM----MQVYSRLSVGYYDLIIADESHRS-------------------IYQRY 280 Query: 604 RRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFLIDQ---DP 652 + I DHFDA+++ LTATP +T +F G P Y Y+Y A+ D L++ D Sbjct: 281 KAIFDHFDAIQLGLTATPTDYIDHNTFALFDCGDGTPSYYYSYEQAIADNNLVNYRVLDA 340 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC 712 R Q +Q+ R QG + D+ +FE +D + ++ A N A+ Sbjct: 341 QTNFQLRGIQGDTLPEPLKQMAR--DQGVEL-----DELNFEGSDIEKSIINQATNDAMV 393 Query: 713 NELTNYL--DPTG-SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADK 769 E + D G K+++F V++AHA + E +F + YP+L+ + ++ D Sbjct: 394 REFMDKSRKDIRGLPHKSIIFAVSHAHAKRLYE----SFNRLYPELQRQGMAEMI---DS 446 Query: 770 DARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 + + F + +P + ++VD+L TGVDIP+I N+VF + V S++ + QM GR TR Sbjct: 447 HMERADATLDDFKFKSMPRVAISVDMLDTGVDIPAIQNLVFAKPVFSKVKFWQMIGRGTR 506 Query: 830 L 830 L Sbjct: 507 L 507 >UniRef50_C4LDI1 Type III restriction protein res subunit n=4 Tax=Gammaproteobacteria RepID=C4LDI1_TOLAT Length = 1123 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 238/887 (26%), Positives = 369/887 (41%), Gaps = 200/887 (22%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL--LNIPP 58 M NFE ++G N+ I AE DP + + ++R F E K + + L PP Sbjct: 1 MATSLNFELIRGHNEKLANIGMLAEQILYLDPGSAITRLRGFAEEVTKEIYEIDCLPKPP 60 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCL----RLGFRL 114 N DLL+ + + + + H LR+ GN H L+ A L +LG + Sbjct: 61 TANFMDLLKNDAFVNITESRLRDLLHFLRKEGNDTAHGGDGSLDKAFAALGVAHQLGQYM 120 Query: 115 AVWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQK 174 A+ YY D + P + NL +++LE+ + E +A+Q++ Sbjct: 121 AINYYGFFQSD----LSALSYPPKPGNLN-----IAQKELEKLLEEN-------QAKQEQ 164 Query: 175 LVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAI 234 L E E + +AR Q AE AE K + Q Sbjct: 165 L-------------SHELEMERKAR------QHAEATAE---------KLQAARVRSQQT 196 Query: 235 KRTLNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEP-GVNKAIAEWPTGKDETG 292 +L E ++R LID QL AGW PE G+ + PT T Sbjct: 197 ANSLAWDENQTRKMLIDTQLAAAGWDLSD----------PEQVGLEIEVLHQPT----TS 242 Query: 293 NQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDE 351 G+ADYVL+ P+AV+EAKR+ RET+ Sbjct: 243 GIGYADYVLWGDDGNPLAVIEAKRS-----------------------RETM-------- 271 Query: 352 VHEAVPEYETSWQDTSGKQ-RFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTR--NMSK 408 + E + + KQ +P + TNG E IW DT+ N + Sbjct: 272 --QKGREQARYYAEGLAKQFNCPMPIVFYTNGYEI--------CIW-----DTKQYNAYR 316 Query: 409 ALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEIL 468 + ++ + L+ + K+ NP S G R YQ +A+++V +++ L Sbjct: 317 QVFGFYSKDSLMFLHYQHQHKEKNLEVLNPDPSIAG-RPYQIEAIKSVTNRFQNQRRQTL 375 Query: 469 LAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAF------EDTRINGD 522 + ATGTGKTR +IA++ L++++ KR+LFL DR+ L QA AF E + G+ Sbjct: 376 IVQATGTGKTRVSIALVALLLKARWVKRVLFLCDRKELRRQADDAFKLHLASEPRCVVGE 435 Query: 523 TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYIL 582 + N I + S +I VAT ++ R Q D V +D I+ DE+HR I Sbjct: 436 S-NRI-----------DQSARIFVATYPGMMNRFSQLD----VGFFDLIIADESHRS-IY 478 Query: 583 DKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVY 634 +K YR I D+FDA+++ LTATP A +T +F G+P + Sbjct: 479 NK------------------YRDIFDYFDALQVGLTATPVKFIARNTFDLFGCENGDPTF 520 Query: 635 RYTYRTAVIDGFLIDQDP----PIQIITRNAQEGVYLSKGEQVERISP-QGEVINDTLED 689 + A I +P P ++ + +L G + ++P Q E + + L Sbjct: 521 NFDLAEA------IAHEPRYLNPFRVKEFTTE---FLRDGIHYKDLTPEQREQLEEDLGA 571 Query: 690 DQDFEVADFNRGLVIPAFNRAV-CNELTNYL-----DPTGS--QKTLVFCVTNAHADMVV 741 ++ V + + F+ + C L N + D T S KT++F + HA Sbjct: 572 EEAQNVHFKGKEIGKKIFSASTDCQILENLMTNGIKDATQSLVGKTIIFAQSQEHA---- 627 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVD 801 E L + F K YPQ I D+ ++ + N R I ++VD+L TG+D Sbjct: 628 EHLESMFVKLYPQYGTKVCKVIHNKVDRPEARIDEFKSPDNPFR---IAISVDMLDTGID 684 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLC-----PEVNKTSFKIFD 843 +P + N+VF R V+S + + QM GR TRLC P +K F IFD Sbjct: 685 VPEVVNLVFARPVKSWVKFWQMIGRGTRLCENLFGPGKDKEEFLIFD 731 >UniRef50_B7RYA9 Type III restriction enzyme, res subunit family n=2 Tax=Gammaproteobacteria RepID=B7RYA9_9GAMM Length = 1165 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 216/879 (24%), Positives = 361/879 (41%), Gaps = 170/879 (19%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLN--IPPC 59 M NFE L+ + AE DDP + LIK+R F E K +G++ PC Sbjct: 7 MTSQNFEMLRPHWPDLANLGGHAEKYVFDDPQSALIKLRCFAE---KLVGIIYREWSLPC 63 Query: 60 ENQHDLLRELGKIAF---VDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAV 116 + L AF VD I+ H +R+ GN+A HE + L+ LA Sbjct: 64 YPNDKFIDRLENNAFASVVDTAIIDKLHAIRKEGNKAAHEGKFGKGSSLWLLKESHILAS 123 Query: 117 WYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLV 176 W + K + FV P+ E L ++ LK++L + Q AE+EA QQ Sbjct: 124 WLLLSMKKGDKADLKPFVEPQPAEKLSAKKAEALKKRLTEHQARFDQAMAELEASQQA-- 181 Query: 177 ALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR 236 E + + A+L +Q ++ A HK+ + A K Sbjct: 182 ---------------------------EQEAQAEAAKLKQQLDKATAAQHKQANEVA-KN 213 Query: 237 TLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG 295 L L+E ++R LID +L GW D + ++ + E V+ G+ G Sbjct: 214 LLELNEAQTRRRLIDTELHSRGWDIDLVNGKDTEEVKFEVEVD--------GQPTRTGIG 265 Query: 296 FADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 + DYVL+ KP+AVVEAKR + ++ Y+ + + ++ + + +++ Sbjct: 266 YCDYVLYDDNGKPLAVVEAKRTRENAEKGRQQAKLYADALEKAHGQRPVIFYTNGHDIY- 324 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREY----RATMKTKSGIWYRDVRDTRNMSKAL 410 W D K+ Y + +Y RAT K +G Sbjct: 325 -------IWDDAQKATPRKLYSFYGKDSLQYMVRQRATRKDLTG---------------- 361 Query: 411 PEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 P +++ R YQ +++ V + + ++ LL Sbjct: 362 --------------------------TPIDTDIAGRMYQIESITRVCERFIANHRKALLV 395 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDI 530 ATGTGKTR AIA+ R+I + KR+LFL DR+ L +QA A+ + + I Sbjct: 396 QATGTGKTRVAIALTKRMIDAGWAKRVLFLCDRKELRKQAGKAY------NEFLSEPLYI 449 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 G + K + +++++T ++ R ++ +P +D I+ DE+HR Sbjct: 450 VGKSKKADRATAQLYISTYPGMM-RIMEDFDP---GYFDLIIADESHRS----------- 494 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFG----EPVYRYTYRTAV 642 + + I ++DA+++ LTATP + T Q+FG P Y AV Sbjct: 495 --------IYNVFGDIFKYYDALQLGLTATPVEMISRSTSQLFGCEYKMPTANYPLEQAV 546 Query: 643 IDGFLIDQDPPIQIITRNAQ---EGV--YLSKGEQVERISPQGEVINDTLEDDQDFEVAD 697 DG L+ P ++++ Q EG+ + EQ+ + +G N+ DF A Sbjct: 547 ADGHLV----PFKVVSHTTQFLREGIQGHSLSDEQIAELEERGIDPNEL-----DFNAAS 597 Query: 698 FNRGLVIPAFNRAVCNELTN----YLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYP 753 ++ + NRA+ L D K+++F HAD++ E F + YP Sbjct: 598 LDKAVYNKDTNRAILRNLMECGQRLADGQTLGKSIIFARNIQHADLMAE----LFAEMYP 653 Query: 754 QLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 + + I ++ + K+ I ++VD+L TG+D+P N+VF + Sbjct: 654 EYGGNFCRVIHSKFERAEELIDDFKATGGKDSEITIAISVDMLDTGIDVPEALNLVFAKP 713 Query: 814 VRSRILYEQMKGRATRLCPEV---------NKTSFKIFD 843 V+S++ + QM GR TRL P + +K+ F IFD Sbjct: 714 VKSKVKFWQMIGRGTRLRPNLYGPATDGSDDKSKFLIFD 752 >UniRef50_Q21ZK0 Type III restriction enzyme, res subunit n=17 Tax=cellular organisms RepID=Q21ZK0_RHOFD Length = 1138 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 227/885 (25%), Positives = 352/885 (39%), Gaps = 193/885 (21%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHL---GLLLNIPPCEN 61 SNF FL+ Y A AE D T+ R E L L +P ++ Sbjct: 2 SNFAFLQSEWSTLYGAAIKAEGMANTDARTSCFYARRTLELAVDWLYKHDPALRLPYQDH 61 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLN-DAQMCLRLGFRLAVWYYR 120 L+ E A D + + ++ +GN AVH L DA R F W R Sbjct: 62 LSALIHEPSFKATAGDAVFTKAKLIKDLGNLAVHSTRKILPVDAVTATRELFHFCYWLAR 121 Query: 121 LVTK------DYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQK 174 + D F VP + T+ Q V + + +AE++A+ +K Sbjct: 122 TYGQRARPAPDLRF-VPALIPSASA-------TATVPDPAPQSVDQLQKLEAELQARDEK 173 Query: 175 LVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAI 234 L L L K AAL+ +L KQ ++ A K T Q Sbjct: 174 LTVL------LSNK------------AALDDEL--------KQLREQVAAAKKANTAQPD 207 Query: 235 KRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 +E +F ID L++AGWQ ++K P N+ + Sbjct: 208 THDYCETETRDKF-IDLLLKEAGWQLNAKNFEIEVSGMPN---NQGV------------- 250 Query: 295 GFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 G+ DYVL+ +P+ +VEAKR D ++ Y+ C + Sbjct: 251 GYVDYVLWGDDGRPLGLVEAKRTRRDAKVGQQQAKLYADCLQAQY--------------- 295 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEW 413 QR P + +NG E+ W D D + + + Sbjct: 296 ---------------DQR---PIIFYSNGYEH----------WIWD--DASYPPRPVQGF 325 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI-VKGQQEILLAMA 472 + +EL ++ ++ AD ++ RYYQ AVR + + ++ Q++ LL MA Sbjct: 326 FKKQELELLIQRRTNRKK--LADAVINDDIVNRYYQHRAVRRIGETFELENQRKALLVMA 383 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSI----F 528 TG GKTR +A+ L + KRILFL DR +L +QA+ AF+ + N + Sbjct: 384 TGGGKTRVVVALSDVLTRCNWAKRILFLADRVALVKQAVNAFKTHLPDSSPVNLVSERHA 443 Query: 529 DIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTE 588 D + +P T+ L+ V +D I++DEAHR Sbjct: 444 DGRVFVSTYP---------TMMGLIDDAADGQRRFGVGHFDLIIIDEAHRSV-------- 486 Query: 589 GELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRT 640 YR I D+FDA+ + LTATP +T +F G P Y Sbjct: 487 -----------YQKYRAIFDYFDAMLVGLTATPKDEIDHNTYSLFDLESGVPTDVYGLDE 535 Query: 641 AVIDGFLIDQDPP--IQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVAD- 697 AV +G+L+ PP I + + +EG+ + + +S + + D LE D+D V D Sbjct: 536 AVAEGYLV---PPRSISVPLKFQREGI------KYKDLSEEEKEQWDALEWDEDGNVPDA 586 Query: 698 -----FNRGLVIPAFNRAVCNELTNYLDPTGSQ--------KTLVFCVTNAHADMVVEEL 744 N+ L FN +++ L G + KT++F NAHAD + + Sbjct: 587 VDSAALNKWL----FNTDTVDKVLENLMSQGEKVAGGDRLGKTIIFAKNNAHADFIADR- 641 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIP 803 F YP + +T + Q++I F+ KE +P+I ++VD+L TG+D+P Sbjct: 642 ---FNVNYPHYKGAFARVVTYKTEY----AQSLIDEFSMKEGMPHIAISVDMLDTGIDVP 694 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLC-----PEVNKTSFKIFD 843 + N+VF + +RS+ + QM GR TRLC P NK F +FD Sbjct: 695 EVVNLVFFKIIRSKTKFWQMIGRGTRLCLDLYGPGQNKQFFNVFD 739 >UniRef50_C0VSE4 Type I site-specific deoxyribonuclease n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSE4_9CORY Length = 1195 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 234/903 (25%), Positives = 382/903 (42%), Gaps = 188/903 (20%) Query: 21 ACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQH--DLLRELGKIAFVDDN 78 A E N +P + R E +H+ L I + DLL + A+ + Sbjct: 28 AIRVERNALGNPAMATMFARPILERLVRHIWRLRKIGDFHGRKLIDLLTDPRFEAYTTEQ 87 Query: 79 ILSVFHKLRRIGNQAVHEYHNDLND-AQMCLRLGFRLAVWYYRL------------VTKD 125 I + H +R GN A H + A + F + W D Sbjct: 88 IRAKLHAIRLAGNDASHGARRITPEQAVRVTQQLFDVLAWAVATHSPHPELQPTTPFNND 147 Query: 126 YDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAIL 185 Y P P+R + EV L ++L + RE +E + ++L ++ Sbjct: 148 YLRPPAGTPAPKRASD---AEVKKLAEELAGKDRE-------LEGKDKELAEQALLLSKA 197 Query: 186 EGKQQ---ETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL---- 238 E ++Q E A+ +AR A +A+ AE+ A L K+ E+E +E+ Q + + Sbjct: 198 EQEKQDQAEAHARERARFEA-KAKSAEEQAALTKKLEEEIAKLREELVAQQARLAVPQKQ 256 Query: 239 ----NLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGN 293 +SE ++R LID QL +AG+ S L V + P + Sbjct: 257 VLPPTVSEAQTRKDLIDPQLERAGFAFGSSIL-----------VEYPVTGMPLSAENHTG 305 Query: 294 QGFADYVLFVGL--KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDE 351 QG+ DYVL VG + +A+VEAK++ + A + ++ Y+ C Sbjct: 306 QGYVDYVL-VGPDGRKLALVEAKKSAQSMNAGVEQARLYADCL----------------- 347 Query: 352 VHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYR----ATMKTKSGIWYRDVRDTRNMS 407 E+ET + P + TNG + A +G Y R+ Sbjct: 348 ------EHETGLR----------PVIFLTNGYHIQLVDDAASLPGTGRGY-GAREVEGFP 390 Query: 408 KALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI-VKGQQE 466 A ++L M+ + A P +++ R YQ + +R V +A +G++ Sbjct: 391 TA-------DQLRTMIARRAGRLP--LASEPVDAKIAGRDYQLEMIRNVTEAFDSEGRRR 441 Query: 467 ILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNS 526 LL MATGTGKTR A+A+ L +Q R+LFL DR++L QA AF+ + N Sbjct: 442 ALLVMATGTGKTRVAMALAKLLRGAQWVGRVLFLADRKALVAQACDAFKISYPECAPVNL 501 Query: 527 IFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY-----DCIVVDEAHRGYI 581 + D ++ +++ +T Q+++ L SD+ A++ D I++DEAHR Sbjct: 502 LEDA--------DEVGEVYFSTYQTMMG--LISDDGTSEAKFRPFDFDLIIIDEAHR--- 548 Query: 582 LDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA--LH--TVQIFG----EPV 633 + +R +RRIL++FD+ + LTATP +H T +F EP Sbjct: 549 --------SIYYR--------FRRILEYFDSYVVGLTATPKADIHHDTFALFHIDGREPT 592 Query: 634 YRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVI---------- 683 Y+ A+ DG+L+ PP+ Q+ ++L G + +SP+ +V Sbjct: 593 GNYSLEAAIKDGYLV---PPVPF----KQDSLFLRAGVSYDDLSPEQKVAWDNQDWGTDE 645 Query: 684 -NDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-------KTLVFCVTNA 735 D L + NR L +NR ++ L G + +T++F T Sbjct: 646 DGDALPPPDGVSPGEINRIL----YNRDTIRKVVGNLIECGHKVDGDRLGETIIFARTQH 701 Query: 736 HADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVD 794 HAD+++EE+ K +P D IT R + I RF K + I ++VD Sbjct: 702 HADLILEEI----NKHFPAFGGDGAAVIT----HSTRYAEAAIKRFKKIDGDLRIAISVD 753 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFD-C--VD 846 +L TG+D+P + N+VF + V S + QM GR TRLCP + +K +F IFD C V+ Sbjct: 754 MLDTGIDVPEVVNLVFFKPVYSPTKFWQMVGRGTRLCPNLFGPGRDKENFYIFDYCGNVE 813 Query: 847 IYS 849 ++S Sbjct: 814 MFS 816 >UniRef50_Q0AZK4 Type I restriction-modification system R subunit (Endonuclease) n=4 Tax=Firmicutes RepID=Q0AZK4_SYNWW Length = 1115 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 237/877 (27%), Positives = 365/877 (41%), Gaps = 187/877 (21%) Query: 5 SNFEFLKGVNDFT-YAIACA-AENNYPDDPNTTLIKMRMFGEATAKHL---GLLLNIPPC 59 +NF+FLKG ++T +A AC AE P + R E K + + +P Sbjct: 3 ANFDFLKGQAEYTLFATACIEAERVLATSPAMAAMGSRKACELAVKWVYSADNTITMPYR 62 Query: 60 ENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVH-EYHNDLNDAQMCLRLGFRLAVWY 118 +N L+ E +D+ S + ++GN AVH E +DA + L F W Sbjct: 63 DNLQSLIHEPSFRFVLDNQTWSKLLYIIKLGNLAVHTEKAISRSDAVLSLSFLFEFIQWI 122 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKL--V 176 DY + G N E++ +A++ A+Q L Sbjct: 123 ------DYCY----------GFNYV----------------ERSFDEAKIPAEQVILDVT 150 Query: 177 ALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR 236 L ++++ K E EA +A++ A+ QL K +HKE + Sbjct: 151 KLKEIDSLIDQKDTEIEA-LRAKIEAMSPQLTAD------------KEHHKE---ERHFT 194 Query: 237 TLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG 295 L++SE +R ID L+ GW F + E V P GK G Sbjct: 195 PLDISELLTRKKYIDVDLKLLGWV-------FGDDVQEE--VELYGMPNPEGK------G 239 Query: 296 FADYVLFV--GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 +ADYVL+ GL P+AV+EAKR + D ++ Y+ C + R ++ + E + Sbjct: 240 YADYVLYGKDGL-PLAVIEAKRTSKDPKIGTQQAKLYADCLEKMTGRRPMMFTTNGFETY 298 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEW 413 W D + QR K+ +S E + + RN K L E Sbjct: 299 --------LWDDLTSPQR-KVSGVFSKADLE--------------KLMNRRNERKPLDEI 335 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 P ++ RYYQ++A+RAV + I G ++ LL MAT Sbjct: 336 ------------------------PIDDKITDRYYQKEAIRAVCENIETGHRKSLLVMAT 371 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGL 533 GTGKTRTA ++ L + LFL DR +L QA F+ + N + + + Sbjct: 372 GTGKTRTASSLTDVLSRGGYITNTLFLADRTALVRQAKNDFKTNLPDMSLCNLLINKEDK 431 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 T + + + + S + A +D I+VDEAHR I K Sbjct: 432 TARIVFSTYPTMLNAIDS--AKNENGQRLFTPAHFDLIIVDEAHRS-IFKK--------- 479 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPAL----HTVQIF----GEPVYRYTYRTAVIDG 645 YR I ++FD++ I LTATP +T F G P Y Y Y TAV Sbjct: 480 ---------YRAIFEYFDSMLIGLTATPKQEVDRNTYDFFEMESGVPTYAYAYETAVDKD 530 Query: 646 FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIP 705 ++ I++ TR +EG+ + +S + + + D+D E+ DF + P Sbjct: 531 HVLVPYHNIEVRTRFLEEGI------TYDELSEEDKARYEEDFTDEDGEMPDF---IPSP 581 Query: 706 AFNRAVCNE----------LTNYLDPTGSQ---KTLVFCVTNAHADMVVEELRAAFKKKY 752 A N + N+ +T + G KT++F HA+ +VE F K Y Sbjct: 582 AVNEFIFNQCTVDMVLEDLMTKGIKVAGGDRLGKTIIFAQNKKHAEYIVER----FNKLY 637 Query: 753 PQLEHDAIIKITGDADKDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFL 811 PQ ++ D + VQT+I F E+ P+I V+VD+L TG+D+P + N+VF Sbjct: 638 PQYHGSFAKRVVCDDNY----VQTIIDDFKIAEKEPHIAVSVDMLDTGIDVPELVNLVFF 693 Query: 812 RKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFD 843 +++RS+I + QM GR TRLC + +KT F IFD Sbjct: 694 KRIRSKIKFWQMIGRGTRLCKNLFGDGQDKTHFLIFD 730 >UniRef50_C6A4W6 Type III restriction enzyme, res subunit n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A4W6_THESM Length = 841 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 175/633 (27%), Positives = 280/633 (44%), Gaps = 131/633 (20%) Query: 239 NLSEEESRF-LIDAQLRKAGWQADSKTLRF---------SKGARPEPGVNKAIAEWPTGK 288 N SE ++R LID +L AGW + + + G+R P Sbjct: 5 NYSEADTRAKLIDPKLHDAGWNENRIKREYVISLGRILNNDGSRTSPKR----------- 53 Query: 289 DETGNQGFADYVLF---VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLE 345 ADYVLF + IAVVEAK+ + D L ++ RY+K D Sbjct: 54 --------ADYVLFYPDIQGHIIAVVEAKKASEDPYKGLEQAKRYAKTLD---------- 95 Query: 346 HYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNG-REYRATMKTKSGIWYRDVRDTR 404 PF YSTNG + TK + + + Sbjct: 96 ----------------------------APFAYSTNGLKIVEYDFLTKQSNEFSEFPEPE 127 Query: 405 NMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ 464 N+ + + +E ++ P + + D RYYQ+ AVR + I+ G+ Sbjct: 128 NLWERYVKRRGLDEAIKRSEKNPLEVPYYIRDKKP------RYYQDVAVRRALEEILLGR 181 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTF 524 + +LL MATG+GKT A + ++L +S K+ILF+VDR L QA AFE Sbjct: 182 KRLLLTMATGSGKTYVAFQIAWKLRKSNFLKKILFIVDRVYLRNQAYNAFEAFG------ 235 Query: 525 NSIFDIKGLTDKFPEDSTKIHVATVQSLV-----KRTLQSDEPMPVARYDCIVVDEAHRG 579 NS +++KG F +D ++ AT Q+L KR Q +P +D +++DE HR Sbjct: 236 NSRWELKGDNFNFAKD---VYFATYQTLYSEKNGKRVYQYFDP---DYFDLVIIDECHR- 288 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRR---ILDHF-DAVKIALTATPA----LHTVQIFGE 631 S + R IL +F +A+ + LTATP + + FG+ Sbjct: 289 ---------------------SGWNRWHDILGYFNNAIHLGLTATPKRSDNVDVYKYFGD 327 Query: 632 PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ 691 PVY Y + DG+L + I++ T +EG K + + + I + E + Sbjct: 328 PVYEYKLAQGIEDGYLAPPEEIIRVYTNIDKEGKITFKELRSAGVKLE---IPEEAELKE 384 Query: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS-QKTLVFCVTNAHADMVVEELRAAFKK 750 + +F + +++P +A+ N + +L+ T KT+VFC T HA V L F Sbjct: 385 YYTAEEFEKSIILPDRTKAIVNWIAQFLESTNPFAKTVVFCPTQRHAREVAALLNNHFNN 444 Query: 751 KYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVF 810 K+ +++ A I+ D +A +V N E P + TVD+L+TG+D+P I NI+F Sbjct: 445 KF-NVDNYAYPIISDDP--EAHQVLKNSFASNDEIFPVVATTVDVLSTGIDVPPIKNIIF 501 Query: 811 LRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 L+ + S++ + Q+ GRA+RL + K +F++ D Sbjct: 502 LKHIGSKVEFHQIIGRASRLAENMRKFTFRVID 534 >UniRef50_Q04L29 Type I restriction-modification system, R subunit, putative n=31 Tax=Streptococcus RepID=Q04L29_STRP2 Length = 1116 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 181/639 (28%), Positives = 280/639 (43%), Gaps = 138/639 (21%) Query: 240 LSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 LSE E+R ID LR AGW F + R E V+ G G+ D Sbjct: 201 LSEAETRKLFIDIDLRLAGWI-------FEENCRVEIAVD--------GLKHGSGIGYCD 245 Query: 299 YVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 YVL+ K +A+VEAK+ +++ P+ V Sbjct: 246 YVLYGKNGKILAIVEAKKASVN-----------------------------PEVGEVQVK 276 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRA----TMKTKSGIWYRD----VRDTRNMSKA 409 EY + + G Q P C+ TNG ++ + +G + ++ V D R++ K Sbjct: 277 EYAEALEKHIGYQ----PICFITNGLKHYILDGPNRRQIAGFYSQEELQLVMDRRHLQKP 332 Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILL 469 L E + S+ + ++ R+YQ+ A+ +V +A +++ LL Sbjct: 333 L----------EDISSKIR------------DDISGRHYQKHAIASVCEAFSNHRRQALL 370 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 MATG GKTRTA++++ L + K +LFL DR SL +QA +F + N Sbjct: 371 VMATGAGKTRTAVSLVDILSRHNWVKNVLFLADRTSLVKQAYDSFRKLLPDLSVCNF--- 427 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE----PMPVARYDCIVVDEAHRGYILDKE 585 L DK S+++ +T +++ +E P V +D I++DE+HR I K Sbjct: 428 ---LEDKEGAQSSRMVFSTYPTMIGAISGQEEVNQRPFTVGHFDLIIIDESHRS-IYQK- 482 Query: 586 QTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPAL----HTVQIF----GEPVYRYT 637 Y+ I D+FDA + LTATP +T F G P Y Y Sbjct: 483 -----------------YKSIFDYFDARIVGLTATPRQDLDKNTYGFFNLENGVPTYAYD 525 Query: 638 YRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVAD 697 AV DG+L+ I+ + +G++ + E+ + +D+ E D D V Sbjct: 526 LEEAVKDGYLVAYHS-IETKLKLPTDGLHYDDLSEEEKEHFDSKFEDDSCEKDIDGSV-- 582 Query: 698 FNRGLVIPAFNRAVCNELTNYLDPTGSQ----KTLVFCVTNAHADMVVEELRAAFKKKYP 753 FN + + V NEL T S KT++F + HA E +R F +YP Sbjct: 583 FNSFVFNKSTVEIVLNELMTRGIQTASGDEIGKTIIFAKNHDHA----EYIRGIFNNRYP 638 Query: 754 QLEHDAIIKITGDADKDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLR 812 + D I D + QT+I F +E+ P I ++VD+L TG+D+P + N+VF + Sbjct: 639 EKGSDYAQVI----DYSIKHYQTLIDDFKIEEKYPQIAISVDMLDTGIDVPEVVNLVFFK 694 Query: 813 KVRSRILYEQMKGRATRLC-----PEVNKTSFKIFDCVD 846 KVRS+ + QM GR TRLC PE +K +F +FD D Sbjct: 695 KVRSKTKFWQMIGRGTRLCKDLFGPEQDKENFLVFDYGD 733 >UniRef50_B4RYU7 Type I site-specific restriction-modification system, R (Restriction) subunit and related helicase n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RYU7_ALTMD Length = 1141 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 230/908 (25%), Positives = 366/908 (40%), Gaps = 215/908 (23%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAK---------------- 48 SNFEFLK + A AE +P ++ R E T K Sbjct: 2 SNFEFLKEWPQL-HEHAVIAEQQVNAEPRSSCFYSRYTLERTVKWMFEFDSWLQEPKYDN 60 Query: 49 HLGLLLNIPPCENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVH-EYHNDLNDAQMC 107 L L+N P D R LG N+ ++R GN AVH E ++ Sbjct: 61 SLNTLINDP------DFKRSLGS------NVFPKIKAVQRAGNNAVHSERKVSAAESIQT 108 Query: 108 LRLGFRLAVWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAE 167 L+ W+YR T + + L+ + Q++ + Sbjct: 109 LKELHHFLYWFYRTYTSN----------KPPTDQLFDTAKIPNTVQVDANL--------- 149 Query: 168 VEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHK 227 V ++L AL ++ + K +E + Q A AL+ +L A++A+ +Q Sbjct: 150 VMNSAKQLKALQKQLSERDEKHKERQDQLLAENEALKKELEAHKAKVAEDKKQ------- 202 Query: 228 EITDQAIKRTLNLSEEESR-FLIDAQLRKAGWQADS-KTLRFSKGARPEPGVNKAIAEWP 285 +Q +K + N +E E+R F+ID L++AGW T+ F P NK + Sbjct: 203 ---NQQVKDSHNYNEAETRKFIIDQYLKEAGWDVTKPNTVEFKVLGMPN---NKGV---- 252 Query: 286 TGKDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLL 344 G+ D VL+ KP+AVVE+KR +D ++ Y+ C + + + L+ Sbjct: 253 ---------GYVDNVLWGSDGKPLAVVESKRTTVDATQGRQQAVLYADCLEKAYGQRPLI 303 Query: 345 EHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTR 404 + + E+H W DT R + G R M+ + D R Sbjct: 304 YYTNGYEIH--------FWDDTQQPPR-------AVQGFHNRDEMQR--------IIDRR 340 Query: 405 NMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ 464 + LP A N ++ R YQ A+++V + Q Sbjct: 341 ALRVPLP---------------------GVAINSDIAGKD-RPYQTLAIQSVCERFTLNQ 378 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTF 524 + LL MATGTGKTRT IA++ L+++ K +LFL DR +L QA F +++ T Sbjct: 379 RRSLLVMATGTGKTRTTIALVDVLMRAGWVKNVLFLADRNALVNQAKKEF--SKLLPKTS 436 Query: 525 NSIFDIKGLTDKFPEDSTKIHVATVQSLVK--RTLQSDEPMPVARYDCIVVDEAHRGYIL 582 I + TD +++++T +++ D + +D ++VDEAHR Sbjct: 437 PEI--LTSATDTL---RGRLYLSTYNTMMNLLSVDARDRLFGIGHFDLVIVDEAHRS--- 488 Query: 583 DKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPAL----HTVQIF----GEPVY 634 YR I ++FDA+ + LTATP +T IF G+P Y Sbjct: 489 ----------------IYKKYRYIFEYFDALLLGLTATPKSDIDKNTYDIFDQPDGDPTY 532 Query: 635 RYTYRTAVIDGFLIDQDPP--IQIITRNAQEGVYLS------------KGEQVERISPQG 680 Y A+ D L+ PP + + +EG+ S K E VER Sbjct: 533 AYELEEAIADKKLV---PPKDVAVDLGFIREGIKYSDLSKDEKEEWESKEELVERDEVLP 589 Query: 681 EVINDTLED----DQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAH 736 +N L + D+ EV F RG+ + R KT++F N H Sbjct: 590 SEVNKFLFNKPTVDKALEVL-FERGIRVAGGERL--------------GKTIIFAANNKH 634 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLP-------NI 789 A+ VV+ + A + K +L K + ++I F E+ P +I Sbjct: 635 AEFVVDRINANYPKYKGKLARVITYK--------EKYADSLIEEFKGEKKPADPNCPLSI 686 Query: 790 VVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC-----PEVNKTSFKIFDC 844 V+VD+L TGVD+P + N++F + ++S++ + QM GR TRLC P+ +K FK+FDC Sbjct: 687 AVSVDMLDTGVDVPEVVNLMFFKVIKSKVKFLQMLGRGTRLCESLFGPDDDKVFFKVFDC 746 Query: 845 VDIYSTLE 852 + E Sbjct: 747 CKNFEYFE 754 >UniRef50_D1W5U0 DEAD/DEAH box helicase n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5U0_9BACT Length = 786 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 187/671 (27%), Positives = 283/671 (42%), Gaps = 146/671 (21%) Query: 233 AIKRTLNLSEEESRFLIDAQLRKAGWQADS----KTLRFSKGARPEPGVNKAIAEWPTGK 288 I + L + ++R++ +A K GW DS + +RF+ G G N E P Sbjct: 2 GISKELTEEDVKNRYISEAITSK-GWPKDSIFMEQKVRFTDGKISLHG-NLVHRERPK-- 57 Query: 289 DETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHY 347 FADYVL+ PIA+VEAK N V L ++ Y++ D Sbjct: 58 -------FADYVLYANKATPIAIVEAKDANHSVSHGLQQAKIYAQMLD------------ 98 Query: 348 SPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMS 407 + F YS+NG G D + Sbjct: 99 --------------------------VKFAYSSNGE----------GFAEHDYLTGKERI 122 Query: 408 KALPEWHRPEELLEMLGSEPQKQN-----------QWFADNPGMSELGLRYYQEDAVRAV 456 ++ E+ EEL+E SE N Q F G + RYYQ +A+ Sbjct: 123 FSMEEFPTKEELIERYKSEANDGNGLNEQELAVIAQPFC--TGQNIFPPRYYQRNAINRT 180 Query: 457 EKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFED 516 AI KGQ +LL MATGTGKT TA +++RL+ S+ K++L+L DR L +Q++ Sbjct: 181 VNAIAKGQSRVLLVMATGTGKTYTAFQIVWRLLHSKLKKKVLYLADRNILVDQSI----- 235 Query: 517 TRINGDTFNSIFDIKGLTDKFPEDSTKIHV----------ATVQSLV----KRTLQSDEP 562 FN +K +T K K H+ A Q L+ + Q P Sbjct: 236 ----QQDFNP---LKKVTHKIDYSKDKNHLEELSSYQVFFALYQQLIGQNDAKNYQELFP 288 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATP 621 P +D ++VDE HRG D S +R ILD+F A I +TATP Sbjct: 289 NP-DYFDLVIVDECHRGSAKDD----------------SNWRNILDYFSSATHIGMTATP 331 Query: 622 A----LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 ++ FGEP+Y Y+ + + DGFL P ++I + + G++ Sbjct: 332 KETKYQSSIGYFGEPIYTYSLKNGIEDGFL----APFKVIN------ITTNIGDEWRPTK 381 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAH 736 Q ++ + +E D+ + +D++ +VI R V E+TNYL T KT+VFC H Sbjct: 382 GQKDIHGNEIE-DRIYNNSDYDYNIVIEDRIREVAQEITNYLKSTDRMAKTIVFCADETH 440 Query: 737 AD---MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTV 793 A+ M + A KK P D +++ITG + K+ I+ E+ P I T Sbjct: 441 AERMRMALTNANADMCKKNP----DYVVRITGSDEYGKSKLDYFISV--AEKYPVIATTS 494 Query: 794 DLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLES 853 LL+TGVD IV +++ S ++Q+ GR TRL + KT F + D ++ Sbjct: 495 KLLSTGVDCKMTKLIVLDQQIGSMTEFKQIIGRGTRLREKEGKTYFTVMDFRNVTRLFAD 554 Query: 854 VDTMRPVVVRP 864 + P+ + P Sbjct: 555 PEWDGPIEIDP 565 >UniRef50_Q7VGA4 Putative uncharacterized protein n=1 Tax=Helicobacter hepaticus RepID=Q7VGA4_HELHP Length = 906 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 174/690 (25%), Positives = 312/690 (45%), Gaps = 129/690 (18%) Query: 242 EEESRFLIDAQLRKAGWQA-DSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E+++R ID L AG++ D K P N AI E+ N ADY+ Sbjct: 5 EQKAREEIDKLLSLAGFELRDFKDYALGDST-PNAARNLAIKEFILK-----NGTRADYI 58 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LFV K V+EAK+ ++ + N++ Y+ +P + Sbjct: 59 LFVAGKACGVIEAKKISLSLSGAENQAKNYAY----------------------TLPAHI 96 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 S+Q +PF Y +N E I++ D+R+ ++ + +H P+ELL Sbjct: 97 PSFQGM-------LPFVYVSNASE----------IYFTDLREPNPRARRIFAFHTPKELL 139 Query: 421 EMLGSEPQKQNQWFADNPGMSEL---GLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 E L S+ ++ P +S LR Q++A+ +EK++ + +Q L+ MATG GK Sbjct: 140 EKLNSDSLRER--IRHIPPLSSQDSKKLRDCQKEAIEGLEKSLKQNKQRALIQMATGAGK 197 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDT--FNSIFDIKGLTD 535 T TA +RL+ + KRILFLVDR +LG+QA F++ + D F+ I+++ L Sbjct: 198 TFTACNFAYRLLSIAKAKRILFLVDRNNLGKQAKKEFDNFSPSADKRHFSEIYNVVHLET 257 Query: 536 KFPEDSTKIHVATVQSLVK-------------------------RTLQSDEPMPVARYDC 570 +K+ + T+Q L + + + + + +D Sbjct: 258 NHILTESKVVITTIQRLYSILRGESEFDSANEEHSAFENEDKETKEVAYNPKIGIDTFDF 317 Query: 571 IVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFG 630 IV+DE HR +R++L++FDA I L+ATP+ HT+ F Sbjct: 318 IVIDECHRS-------------------IYGLWRQVLEYFDAFLIGLSATPSKHTLGFFA 358 Query: 631 EPVY-RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE---RISPQGEVINDT 686 + V +Y +++D + + +I TR +++G + + + R ++ ++ Sbjct: 359 QNVVAQYDLEKSILDKVNVGYE-IFRIKTRISEQGSIIEANAEFQIPFRDKDTRKIGYES 417 Query: 687 LEDDQDFEVADFNRGLVIPAFNRAVC----NELTNYLDPTGSQ----KTLVFCVTNAHAD 738 LE+D ++ AD +R ++ P+ R + N++ + L P + KTL+F + HA+ Sbjct: 418 LEEDLEYSKADLDRSVLAPSQIRTILETYKNKVFDLLFPERERSYLPKTLIFAKDDNHAE 477 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 +V R F +++ KIT + + +I F + I VTVD++ T Sbjct: 478 EIVRLAREVFNA-----DNEFAQKITYNIGN--QNPHELINAFRHSKKFRIAVTVDMIAT 530 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATR---------LCPEVN-KTSFKIFDCVDIY 848 G DI + ++F+R V+S Y QM GR R + P + KT F + D V + Sbjct: 531 GTDIKPLEVLIFMRDVKSASYYAQMVGRGVRSIHNDDLRAVTPNADCKTRFYVIDAVGV- 589 Query: 849 STLESVDTMRPVVVRPKVELQTLVNEITDS 878 S + +D+ RP+ + ++ L+ ++ ++ +S Sbjct: 590 SESQKIDS-RPLERKKRLSLKEILQQVRES 618 >UniRef50_A6L7V1 Type I restriction enzyme EcoKI R protein n=11 Tax=Bacteroides RepID=A6L7V1_BACV8 Length = 900 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 185/686 (26%), Positives = 290/686 (42%), Gaps = 149/686 (21%) Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF----- 296 EE++R ID AGW+ VN+ E PT +G Sbjct: 4 EEKARIKIDQWFADAGWKV----------------VNREDYE-PTCTAVAIREGLLKGNL 46 Query: 297 -ADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADY LF+ K + V+EAKR D A EV E Sbjct: 47 EADYFLFINGKAVGVLEAKREETDAFA---------------------------SEVCEQ 79 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 Y S + + +PF +++NG+E ++ D R+ + + + Sbjct: 80 AALYARSVPNIYQAYQKPLPFIFTSNGKE----------LYCCDFREQDSCFRQIMNIPT 129 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 P EL++ LG E FA P + + GLR Q +AV +EK+ GQ L+ +ATG Sbjct: 130 PHELVKRLGIE-----DAFAGLPTLKKKGLRDCQYEAVTELEKSFRAGQNRALMVLATGV 184 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI--NGDTFNSIFDIKGL 533 GKT TA +R++ +R+LFLVDR +LG+QA G F R+ NG+ FN+IF + L Sbjct: 185 GKTYTACLAAYRMLSYTPMRRVLFLVDRNNLGKQAEGEFGTFRLTENGEAFNTIFTVNRL 244 Query: 534 -TDKFPEDSTKIHVATVQSLV--------------------KRTLQSDEPMPVARYDCIV 572 + P DS + ++T+Q L + TL + +P +D I+ Sbjct: 245 RSSSIPSDSNVV-ISTIQRLFSFLKGETIEDNDDDENEPIEEVTLPPNPNLPHDYFDMII 303 Query: 573 VDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-IALTATPALHTVQIF-G 630 +DE HR +R++L++FD + + LTATP T+ F Sbjct: 304 IDECHRS-------------------IYGNWRKVLEYFDTARLVGLTATPIPETMAFFNN 344 Query: 631 EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQV-ERISPQGEVINDTLED 689 + YT +++DG +D +I T+ + G + +GE+ E GEV + ++ Sbjct: 345 NCIVNYTLEKSIVDGVNVDCR-VYRIKTQVTETGGAILEGEKFKEETRYTGEVKIVSSKE 403 Query: 690 DQDFEVADFNRGLVIPA--------FNRAVCNELTNYLDPTGS------QKTLVFCVTNA 735 + + + NR ++ PA + V EL N DP KTL+F + A Sbjct: 404 TKIYTNKELNRSIINPAQIKLVLSTYRDVVYTELFN--DPQREPNMDFLPKTLIFALNEA 461 Query: 736 HADMVVEELRAAFKKKYPQLEHDAIIKIT---GDADKDARKVQTMITRFNKERLPNIVVT 792 HA +V+ + F + + + KIT GD+++ +I +F ++ I VT Sbjct: 462 HATNIVQIAKEVFGRTDDRF----VQKITYSAGDSNE-------LIRQFRNDKDFRIAVT 510 Query: 793 VDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE-------VNKTSFKIFDCV 845 L+ TG D+ + ++F+R V S LY QMKGR R + N S F V Sbjct: 511 CTLVATGTDVKPLEVVMFMRDVESLPLYIQMKGRGVRTIGDEQLRNVTPNAFSKDCFYLV 570 Query: 846 DIYSTLESVDTMRPVVVRPKVELQTL 871 D E T+ P+ P + TL Sbjct: 571 DAVGVTEHAQTVAPIDDAPTTKTITL 596 >UniRef50_Q0ATD1 Type III restriction enzyme, res subunit n=4 Tax=Proteobacteria RepID=Q0ATD1_MARMM Length = 1137 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 241/910 (26%), Positives = 377/910 (41%), Gaps = 174/910 (19%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCEN 61 M NFE L+ + AE D + L+K+R+F E K + L +P E+ Sbjct: 1 MKSVNFEILRKDWPELAQLGAFAETYAHTDAASALVKLRLFAENLTKDIYRDLRLP-RED 59 Query: 62 QHDLLRELGKIAF---VDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 + + LG AF + ++ H +R GN+A H + A L+ LA W Sbjct: 60 RMSFVDMLGGSAFQSAIPRVVIDKLHAIRVHGNKAAHGEQATIKTALFLLKEAHGLARWL 119 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 + +P+F ++L+ V Q + E Q++K A+ Sbjct: 120 LVAFKRQKADDLPLF------------------KELDNPV----QGASATELQREKKRAM 157 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL 238 A EAQ Q L LEA E+ A + + E + +E D+A L Sbjct: 158 ERLAA--------QEAQMQVLLKELEA---EREKAKAAEAKTEELSAAREEGDKAASE-L 205 Query: 239 NLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKA--IAEWPTGKDETGNQG 295 E +R +ID L AGW + G + V K +A+ PT ETG +G Sbjct: 206 EFDEATTRARIIDMMLASAGWDV-------ANGLKSTEQVAKELEVADQPT---ETG-KG 254 Query: 296 FADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 + DYVL G P+AVVEAKR + + ++ Y+ + + + + + ++ Sbjct: 255 YVDYVLRDGDGMPLAVVEAKRTSKNAELGRKQAELYANALEKQYGIRPAIFYTNGYDIW- 313 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 W D G K+ YS + +Y + R + ALP Sbjct: 314 -------LWDDAGGFPPRKVYGYYSPDSLQYLVRFQ----------RANKQPLTALP--- 353 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 P K ++ R YQ + ++ V + ++ L+ ATG Sbjct: 354 ------------PNK------------DIAGRLYQVETIKRVSERFEDKHRKALIVQATG 389 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD-IKGL 533 TGKTR AIA+ LI+++ KR+LFL DRR L +QA AF + + G+ + I+G Sbjct: 390 TGKTRVAIALSELLIRAKWAKRVLFLCDRRELRKQAKNAFGNF-LKGEPIRVVNSAIRGN 448 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 ++ +I VAT +++K D V +D I+ DE+HR Sbjct: 449 ANE------RIFVATYPAMLKVYQAFD----VGFFDLIIADESHRS-------------- 484 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFG----EPVYRYTYRTAVIDG 645 + Y + +FD ++ LTATP T +F P Y A+ +G Sbjct: 485 -----IYNVYGDLFYYFDCPQVGLTATPVDFVTRSTFDLFKCEGQNPTANYELEQAIEEG 539 Query: 646 FLIDQDPPIQI---ITRNAQEGVYLSKGEQVER--ISPQGEVINDTLEDDQDFEVAD--- 697 +L P ++ T+ +EG+ L + +R + QGE D + D EV D Sbjct: 540 YLT----PFEVYEHTTKFLREGIRLEGLTKAQRQQLEDQGE---DPDQYDYSSEVVDKAI 592 Query: 698 FNRGLVIPAFNRAVC-NELTNYLDPTGSQ---KTLVFCVTNAHADMVVEELRAAFKKKYP 753 FN+ NRAV N + N L Q KT++F ++AHA + LR F + YP Sbjct: 593 FNKDT-----NRAVLRNLMENGLRDASGQTIGKTIIFARSHAHALL----LREVFDELYP 643 Query: 754 QLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 Q ++ + D A ++ + I ++VD+L TG+D+P I N+VF + Sbjct: 644 QY-GGRFCQVIDNYDPRAEQLIDDFKGDGANKDLTIAISVDMLDTGIDVPEILNLVFAKP 702 Query: 814 VRSRILYEQMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRP-KVE 867 VRS + + QM GR TRLC P +KT F+IFD + E+ +P RP K Sbjct: 703 VRSPVKFWQMVGRGTRLCEDLFGPGQHKTVFRIFDHWGNFERFET--GYKPAEPRPSKSL 760 Query: 868 LQTLVNEITD 877 LQ L + D Sbjct: 761 LQQLFEQRID 770 >UniRef50_A2TPW6 Type I restriction enzyme, R protein n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TPW6_9FLAO Length = 1168 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 232/906 (25%), Positives = 387/906 (42%), Gaps = 194/906 (21%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHL---GLLLNIPPCEN 61 SNF F++ V+ Y AE DP T+L RM E + L +P + Sbjct: 3 SNFSFIEAVDREIYDRCLTAERTAYTDPRTSLAHSRMALELAVYWIYNEDPNLTLPYRPD 62 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRL 121 + L++E G + ++N S +R +GN A+H D+ + + ++ R Sbjct: 63 LNLLMKERGFRSQFNNNFYSQIDSIRIVGNFAIHNRKVSEEDSLKIIDHLY----YFLRW 118 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 + Y VPV G ++ +++ K+ + R++ + +QQK+ Sbjct: 119 MASGYK-EVPV-----AGLGIFEYDLIP-KEGADAISRKRIE-------EQQKMF----- 159 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEK---NAELAKQTEQERK--AYHKEITDQAIKR 236 QE + + Q ++ A + AEK N L Q E+ +K A K++ Q I++ Sbjct: 160 -------YQEID-KIQDKINAKDEAFAEKVKENEILRLQYEELKKSQALTKKVATQEIEK 211 Query: 237 TLNLSEEESR-FLIDAQLRKAGWQADSKTLR-FSKGARPEPGVNKAIAEWPTGKDETGNQ 294 +E ++R F ID LR+AGW D+ ++ F P + + P+G Sbjct: 212 VNPTTEADTRKFFIDVLLREAGWDIDAPNVKEFEVRGMP-------LTDNPSG------L 258 Query: 295 GFADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 G+ADYVL+ KP+AVVEAK+ I N++ Y+ C + + + ++ + Sbjct: 259 GYADYVLWDDNGKPLAVVEAKKTLISATQGENQAELYADCLEEMYGQRPVIYY------- 311 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGRE---YRATMKTKSGIWYRDVR-DTRNMSKA 409 T+G + + + C+ + RE + + ++ IW R+ R D R M Sbjct: 312 ------------TNGFETYLLDDCFYKSAREVFGFYTKKELQTIIWRRENRQDIRAMPID 359 Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEK----------A 459 + RP YQ A+R+V + Sbjct: 360 MAITDRP-------------------------------YQMRAIRSVAEHWAGSDTRTGQ 388 Query: 460 IVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI 519 ++ + LL +ATGTGKTRTAI++ L+++ KRILFL DR SL +QA F + Sbjct: 389 LIGTNRRALLVLATGTGKTRTAISLSKILLEANWAKRILFLADRISLVKQAKRNFVNLLP 448 Query: 520 NGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM-PVARYDCIVVDEAHR 578 + T N I + K T+ ST T+ L+ + D V +D I+VDEAHR Sbjct: 449 DHSTVNLI-ETKDDTNARIVFST---YKTLMGLIDSSRSEDGRFYGVGHFDLIIVDEAHR 504 Query: 579 GYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFG---- 630 I +K QT I ++FD + + LTATP +T +FG Sbjct: 505 S-IYNKYQT------------------IFEYFDGLFLGLTATPKGSIDHNTYDVFGLAKD 545 Query: 631 EPVYRYTYRTAVIDGFLID---QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND-T 686 P Y + AV FL D P++ + ++G+ S+ + +++ + E + Sbjct: 546 NPTDAYDFDEAVAQKFLSPYKVHDVPVKFL----RKGIKYSELSEEDKLKFEDEFLEGRK 601 Query: 687 LEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ--------KTLVFCVTNAHA- 737 D+ + + + L FN+ + +Y G + KT++F T HA Sbjct: 602 ASGDEHIQKTELGKWL----FNKPTAIKALSYFLKHGIKVNGGDEIGKTIIFARTQKHAE 657 Query: 738 ---DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRF---NKERLPNIVV 791 D+++E R F KY ++ IT K QT I RF K+ LP I + Sbjct: 658 FLRDVLLEMDREQFGNKYVKV-------ITNQTPK----AQTFIERFCEDKKDLLPQIAI 706 Query: 792 TVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFDCVD 846 +VD++ TG+D P + N++F + V+S + QM GR +RL P++ +K F IFD Sbjct: 707 SVDMMDTGIDAPKVVNLIFYKPVKSYSKFWQMIGRGSRLSPDLFGPGEDKKEFLIFDLCQ 766 Query: 847 IYSTLE 852 + E Sbjct: 767 NFEFFE 772 >UniRef50_C6LMG2 Type I restriction-modification system, R subunit n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LMG2_9FIRM Length = 1132 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 234/898 (26%), Positives = 371/898 (41%), Gaps = 222/898 (24%) Query: 4 KSNFEFLKGVNDFT-YA-IACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIPP 58 K+NF++LK + F+ +A +A +AE DP +++ R E K + + L +P Sbjct: 20 KTNFDYLKKDSKFSGFADVAISAEKIILMDPEASILNSRRAMEFAIKWMYSVDSDLEMPY 79 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVW 117 +N L+ V ++ +RR GN A H ++A +CL L ++ Sbjct: 80 QDNLQSLMNAEEYRHIVGPDLWKRMDYIRRCGNNAAHSNKKLGKDEAMLCLE---NLFIY 136 Query: 118 YYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVE-AQQQKLV 176 DF + Q E+ +K + +E A++ K Sbjct: 137 L--------DFIAYCY-----------------SDQYEEHSFDKTLITSRIEKARESKDA 171 Query: 177 ALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR 236 A+ + K+QE A+ + L L A+ A EL+ + +++++ Y + + Sbjct: 172 AIA--VKTELAKEQEKSARQELDLQKLIAENASLKEELSSRRQEQQQTY--------VPK 221 Query: 237 TLNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG 295 L+LSE ++R L ID+ L AGW + R E + +G G Sbjct: 222 PLDLSEYKTRKLYIDSMLTDAGWVE-------GRDWRNEVEL--------SGMPNQSEVG 266 Query: 296 FADYVLFVGL-KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 FADYVL+ + +P+A+VEAKR +DV SK L LLE Sbjct: 267 FADYVLYDDMHRPLAIVEAKRTCVDV----------SKGRQQAKLYADLLE--------- 307 Query: 355 AVPEYETSWQDTSGKQRFKI-PFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEW 413 Q++K P + TNG E + + Sbjct: 308 ---------------QKYKRRPVVFLTNGFETH-----------------------IIDG 329 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGL-----------RYYQEDAVRAVEKAI-V 461 PE + S+ + +WF N M+ L RYYQE A++AV + Sbjct: 330 QYPERKCSAIYSK-RDLEKWF--NLMMTRTSLKHVVVNKNIAGRYYQESAIKAVCSSFGE 386 Query: 462 KGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING 521 K +++ LL MATG+GKTRT IA+ L+++ + ILFL DR SL QA +F + N Sbjct: 387 KNRRKALLVMATGSGKTRTVIALCDCLLKAGWIRNILFLADRNSLVTQAKRSFVNMLPNL 446 Query: 522 DTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM-PVARYDCIVVDEAHRGY 580 N + + D + T+ + + T + +D ++ DEAHR Sbjct: 447 SCTNLVEE----KDNYNAHCVFSTYQTMMNCIDTTCDDKGKLFTCGHFDLVICDEAHRS- 501 Query: 581 ILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEP 632 I +K YR I +FDA I LTATP +T ++F G P Sbjct: 502 IYNK------------------YRDIFAYFDAPLIGLTATPKDEIDKNTYEVFELENGVP 543 Query: 633 VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQD 692 Y Y AV DG+L+D Y+S +++ I QG V ++ E+D+ Sbjct: 544 TYGYDLAQAVKDGYLVD----------------YVSVESELKFIE-QGIVYDELSEEDKQ 586 Query: 693 F-------EVADFNRGLVIPAFNRAVCNELT---------------NYLDPTGSQKTLVF 730 E + + A N + NE T +Y G KT++F Sbjct: 587 TYEETFTDEHGNLPESISSSALNTWIFNEDTIKKVLHILMTEGIKIDYGQKLG--KTIIF 644 Query: 731 CVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRF-NKERLPNI 789 + HA+ ++E F K+YP L A + D Q+ I F + +++P I Sbjct: 645 AKNHDHAEKILE----VFHKEYPHLTDYAKV-----IDNYMTYAQSAIDEFSDPKKMPQI 695 Query: 790 VVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV----NKTSFKIFD 843 ++VD+L TG+D+P + N+VF +KV S+ + QM GR TRLCP + +K F IFD Sbjct: 696 AISVDMLDTGIDVPEVLNLVFFKKVMSKAKFWQMIGRGTRLCPGLIDGEDKQKFYIFD 753 >UniRef50_B0URP6 Type III restriction protein res subunit n=7 Tax=Bacteria RepID=B0URP6_HAES2 Length = 946 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 181/693 (26%), Positives = 292/693 (42%), Gaps = 155/693 (22%) Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 E++++ +ID +L +AGW ++ K P G+ A+ E+PTG G DY+L Sbjct: 12 EQQTKDIIDEKLIQAGW-----LIQTVKAYNPNAGLGIAVREYPTGT------GPVDYLL 60 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 FV +P+A++EAK+ N Y + + E Y Sbjct: 61 FVDREPVAIIEAKQENF---------------------------AYKLNTIEEQSARYAK 93 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 S + + I F Y + G R T + D ++ + +HRPE L + Sbjct: 94 S--ELKNIAQADIAFLYESTGTITRFT----------NCNDPTPRAREVFNFHRPETLQK 141 Query: 422 -------MLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 L ++ + N EL LR Q A+ ++ ++ K L+ MATG Sbjct: 142 WATEGKNTLRAKLKALPVLNPQNLPACELNLRDCQLTAIENIQTSLAKDLPRALIQMATG 201 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQA------LGAFEDTRINGDTFNSIF 528 GKT TAI +M+RL++ +RILFLVD +LGEQA +D R F ++ Sbjct: 202 AGKTYTAINIMYRLLKYTGKRRILFLVDTVNLGEQAEQEMLVFTPPDDNR----KFTELY 257 Query: 529 DIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD------------------EPMPVAR--- 567 + + + ++ + T+Q + D EP+ VA Sbjct: 258 NTQVIKSPHIPKGVEVCICTIQRMYSLLKGEDVAIPDDSVELEEWENRLKEPLSVAYQPN 317 Query: 568 -----YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA 622 +D I +DE HR + +R++LD+FDA I LTATP Sbjct: 318 LPPEFFDFIFIDECHRSI-------------------YNLWRQVLDYFDAYLIGLTATPD 358 Query: 623 LHTVQIFGEPVY-RYTYRTAVIDG-------FLIDQDPPIQIITRNAQEGV-YLSKGEQV 673 T F + V Y++ AV DG FLI+ IQ A+E V Y + + Sbjct: 359 NRTFGFFNQNVVSEYSHEQAVADGVNVGNEVFLINTKISIQGGKFKAEELVEYRERTTRR 418 Query: 674 ERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD---PTGSQ--KTL 728 +R Q + D+ + +R +V P+ R + ++L P + KTL Sbjct: 419 KRWQQQ--------DTDESYTAKQLDRDIVNPSQIRTIIRTFRDHLPIIFPNRQEVPKTL 470 Query: 729 VFCVTNAHADMVVEELRAAFK------KKYPQLEHDAIIKITGDADKDARKVQTMITRFN 782 +F ++HAD +++ +R F KK D I+ GD + + +T++ F Sbjct: 471 IFAQNDSHADDIIKMVREEFGQGNEFCKKITYKAKDDILDENGDIVEQGEEPKTILANFR 530 Query: 783 KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR---------LCPE 833 P I VTVD++ TG D+ + ++F+R V+SR +EQMKGR TR + P Sbjct: 531 NSYHPRIAVTVDMIATGTDVRPLECLLFMRDVKSRNYFEQMKGRGTRTLDKDGLQKVSPP 590 Query: 834 V--NKTSFKIFDCVDIYSTLES----VDTMRPV 860 KT + I D + + +L++ +DT R V Sbjct: 591 APSAKTHYVIVDAIGVTKSLKTSSIQLDTKRSV 623 >UniRef50_B5Y627 Type I restriction-modification system, R subunit n=2 Tax=Clostridia RepID=B5Y627_COPPD Length = 748 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 182/639 (28%), Positives = 269/639 (42%), Gaps = 157/639 (24%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 +EE ++ LID LR W T + E+P E ADY Sbjct: 10 TEENAKSLIDEHLRALNWNLADFT--------------QITKEYPIPGGER-----ADYA 50 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 + V P+A++EAK+ +D+ A L ++ Y+K + Sbjct: 51 ILVNSLPVAIIEAKKQGMDLNAALAQAKNYAKKLNE------------------------ 86 Query: 361 TSWQDTSGKQRFKIPFCYSTNGRE-YRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 SGK+ F I ++++G+ YR +K + RPE++ Sbjct: 87 ------SGKEVFLI---FASDGKVFYRQNLKANT---------------------RPEKI 116 Query: 420 LEMLGSEPQKQNQWFADNPGMSEL--GLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 ++ K NP L GLR YQ+ AV V A G+ + MATGTGK Sbjct: 117 SRLMTYAEIKDFL----NPETDILLAGLRNYQKIAVSQVVSAFQLGRDRTYIEMATGTGK 172 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 T TA ++ +L + +R+LFLVDR SL EQ + +F ++ GDTF I LT Sbjct: 173 TITAAGIISKLYKVGLVRRVLFLVDRDSLAEQTVRSF--NKVLGDTFK----INRLTGTK 226 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 + I V+T+Q L P +D +++DE HR Y D Sbjct: 227 EDKYNDISVSTIQFLYVN--DKYRAYPNNFFDLVILDECHRSYFGD-------------- 270 Query: 598 DYVSAYRRILDHFDAVK---IALTATPALHTVQ----IFGEPVYRYTYRTAVIDGFLIDQ 650 + +++HF K + LTATP+ Q FGEPV+RY+Y V DG L Sbjct: 271 -----WHTVIEHFRTGKAKVLGLTATPSDKETQSTDDYFGEPVFRYSYYQGVKDGIL--- 322 Query: 651 DPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRA 710 + + + + + G I+D DFE D R + +P N Sbjct: 323 --------------AFTERYKFLTNVDLSG--IHDM---GFDFEPEDLGRRVDVPRRNEL 363 Query: 711 VCN---ELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDA 767 + E+ Y KTLVF + AHA+ LR A KY +L + + K + +A Sbjct: 364 IAEKYFEVIGYEQTHTIPKTLVFAASIAHAN----HLRDALITKYNEL--NKLPKDSSEA 417 Query: 768 D-------KDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRIL 819 + R +I +F + + I V+VD+L+TG+D P I +V R +S+IL Sbjct: 418 EDFIVVIHNQVRNASELIRKFQEIDSEIRIAVSVDMLSTGIDAPDIEVLVMARPTKSKIL 477 Query: 820 YEQMKGRATRLCPE----VNKTSFKIFDCVDIYSTLESV 854 Y QMKGRATR C E K SFK+ D VD+ E V Sbjct: 478 YVQMKGRATRKCNEQEHGKTKESFKLIDFVDLAGIEEVV 516 >UniRef50_C8W942 Type III restriction protein res subunit n=5 Tax=Bacteria RepID=C8W942_ATOPD Length = 1125 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 235/895 (26%), Positives = 359/895 (40%), Gaps = 211/895 (23%) Query: 6 NFEFLKGVNDF-TYAIACA-AENNYPDDPNTTLIKMRMFGEATAKHLGL---LLNIPPCE 60 NF FLK + ++ ++ AC AE + P + R E K + +N P Sbjct: 2 NFSFLKDIKEYEMFSGACEDAERTFASSPAMCALACRKAMELAVKWVYAADETMNEPWRS 61 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLG-FRLAVWYY 119 N L+ E +D + ++GN A H + G F W Sbjct: 62 NLASLIHEASFKNAMDTTTWGQLRYIWKLGNNAAHTQRQIDARDALAALAGLFNFVEWI- 120 Query: 120 RLVTKDYDFPVPVFVLPERGENLYHQEVL-TLKQQL-EQQVREKAQTQAEVEAQQQKLVA 177 DY + P E + + + LKQ L EQ++R+ Q AE +A Sbjct: 121 -----DYCYG------PSYEERHFDPKAIPVLKQALDEQKLRKTLQENAEKDA------- 162 Query: 178 LNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRT 237 R+A LE Q+ + A+ ++ EQ + H + Sbjct: 163 ---------------------RIAQLEEQVRAQRAQFSETKEQRPEETHFNPDE------ 195 Query: 238 LNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 + E E+R ID L AGW D K AE + TG GF Sbjct: 196 --IPEYETRKRYIDVDLEYAGWNLDDSV--------------KTEAEVSGMPNPTGT-GF 238 Query: 297 ADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 DYVL KP+A+VEAKR D ++ Y+ C + + Sbjct: 239 IDYVLLGRNGKPLAIVEAKRTMYDPLKGEQQARLYANCLEKKY----------------- 281 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYR------ATMKTKSGIWYRDVRDTRNMSKA 409 G + PF + +NG E R A + SG++ R Sbjct: 282 ------------GYR----PFVFLSNGFETRFMDDGTAAPRACSGVFGR----------- 314 Query: 410 LPEWHRPEELLEMLGSEPQKQN-QWFADNPGMSELGL-RYYQEDAVRAVEKAIVKGQQEI 467 E+L ++ + +N N ++ G RYYQ +A+ AV + + +G + Sbjct: 315 -------EDLERLMNRRGKVKNLSTVPVNRDIAGGGRNRYYQVEAIEAVCQNMEEGHRRS 367 Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSI 527 LL MATGTGKTRTA ++ L ++ +LFL DR +L QA AF+ N T ++ Sbjct: 368 LLVMATGTGKTRTAAGLVDVLSRAGAVTNVLFLADRVALVRQAKNAFQ----NYLTTMTV 423 Query: 528 FDIKGLTDKFPEDSTKIHVATVQSL------VKRTLQSDEPMPVARYDCIVVDEAHRGYI 581 ++ DK +I +T ++ VKR + P A +D I+VDEAHR I Sbjct: 424 CNLCETDDKAKNVDARIVFSTYPTILNAVDDVKRDGDARLFTP-AHFDLIIVDEAHRS-I 481 Query: 582 LDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPV 633 K YR I D+FD+ + LTATP +T F G P Sbjct: 482 FKK------------------YRAIFDYFDSPVVGLTATPKDEVDRNTYDFFQVERGIPT 523 Query: 634 YRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG-EVINDTLEDDQD 692 Y Y Y TAV ++ I++ T +LSKG + +S + + +D E+ Q Sbjct: 524 YLYEYATAVEKDKVLVPYYNIEVQTN------FLSKGITYDELSEEDRQRYDDDWEEAQG 577 Query: 693 FEVADFNRGLVIPAFNRAVCNE------LTNYLDP----TGSQ---KTLVFCVTNAHADM 739 D+ + A +R V NE LT +D G + KT++F HA++ Sbjct: 578 TSAPDY---VEASALDRFVFNEHTIDLVLTTLMDEGIKIKGGEHIGKTIIFAQNRKHAEI 634 Query: 740 VVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTG 799 +V+ F + YP+ K D A T+IT F + +P I V+VD++ TG Sbjct: 635 IVKR----FNELYPKFGAQGFCKRVVHTDDYA---PTVITDFETKEMPTITVSVDMMDTG 687 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV-----------NKTSFKIFD 843 +D+P + N+VF ++V+S++ + QM GR TRLC + +K F IFD Sbjct: 688 IDVPEVVNLVFFKQVKSKVKFWQMIGRGTRLCEGIHAQDKVSGEYEDKKHFFIFD 742 >UniRef50_C4XDR7 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XDR7_MYCFE Length = 808 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 185/722 (25%), Positives = 315/722 (43%), Gaps = 143/722 (19%) Query: 225 YHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEW 284 Y E+ K T+N E + RF+ A L +AGW + + + A K I E Sbjct: 7 YLNEVIKMNKKNTINEEEVKLRFITPA-LERAGWDKNFINMEYYISA------GKVIFEN 59 Query: 285 PTGKDETGNQGFADYVL-FVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRET 342 K + DY+L + G P+A++EAK + L ++ Y+K Sbjct: 60 GEAKKLKAKR--IDYLLNYNGDGSPLAIIEAKGEDHKEGDGLLQAQNYAK---------- 107 Query: 343 LLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRD 402 R + F +++NG +R + D++ Sbjct: 108 ----------------------------RLGVRFVFTSNGNNFR----------FYDMKT 129 Query: 403 TRNMSKALPEWHRPEELLEMLGSEPQKQNQ----------WFADNPGMSELGLRYYQEDA 452 + L E+ P+EL EM E K+N+ ++ N + RYYQ+ A Sbjct: 130 GIEKTIGLDEFFTPDELFEMTYGEEIKENKALEKIISTPYYYGQNSHIP----RYYQKRA 185 Query: 453 VRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQA-L 511 + A+ KG+ ILL MATGTGKT A +++RL +S K+IL+L DR L +Q + Sbjct: 186 INDTVDAVAKGKDRILLVMATGTGKTYVAFQIIWRLWKSGLKKKILYLADRNILIDQTII 245 Query: 512 GAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL--------VKRTLQSDEPM 563 G F+ + NS+ + + + + S +I+++ Q L +K+ +S +P Sbjct: 246 GDFKPFK------NSMVKV---SKRNMDTSYEIYLSLYQQLSENGSEDSLKKLKESFKP- 295 Query: 564 PVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA 622 +D I+VDE HRG + S +R IL++FD A KI LTATP Sbjct: 296 --DFFDLIIVDECHRGSASED----------------SKWREILNYFDSATKIGLTATPK 337 Query: 623 ----LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 + + FGEP+Y Y+ + + DG+L P +++ V+ + E+ +R Sbjct: 338 ETAEVSNIDYFGEPIYTYSLKEGIEDGYL----APYKVVKFGINTDVFGYRPEKDKR-DK 392 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ--KTLVFCVTNAH 736 GE++ +D ++ V DF++ +VI + V ++T+YL ++ KT+VFC H Sbjct: 393 YGEIV-----EDNEYNVKDFDKTIVIEERTKEVAKKITDYLKSINNRYAKTIVFCDDIEH 447 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLL 796 A+ + + L + +H I++ITGD ++ +++ I + E P IV T +L+ Sbjct: 448 AERMRQAL-VHYNSDMMAKDHRYIVRITGDNEEGKKQLDNFID--DNELYPTIVTTSELM 504 Query: 797 TTGVDIPSICNIVFLRKV---RSRILYEQMKGRATRLC-------PEVNKTSFKIFDCVD 846 TTGV+ +C ++ L ++Q+ GR TR+ NK F I D + Sbjct: 505 TTGVNC-KLCRVIALDNTFGENGMTKFKQIIGRGTRIKEFDDPKDKHKNKLYFTILDFKN 563 Query: 847 IYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEA--DGRSFAEHSHEQLVAKLQ 904 D P + + L N+ ET K E +G + E+S + + + Sbjct: 564 ATKLFADPDFNGPAIQEEFFNPEILRNKKAKQETKKEYELVDEGLVWKENSEQNKSNRRK 623 Query: 905 RI 906 +I Sbjct: 624 KI 625 >UniRef50_Q73J29 Type I restriction-modification system, R subunit n=2 Tax=Treponema RepID=Q73J29_TREDE Length = 934 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 166/640 (25%), Positives = 277/640 (43%), Gaps = 129/640 (20%) Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 L E+++R IDA L AGW ++ F A V + I + GN+ ADY Sbjct: 16 LPEQKARVYIDAYLEDAGWTVVNRN-EFVPEAINAQAVRENILK--------GNKE-ADY 65 Query: 300 VLFVGLKPIAVVEAKR--NNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 +L++ K I V+EAKR NN+ + EV E Sbjct: 66 ILYLDGKAIGVLEAKRKENNLGL------------------------------EVAEQAQ 95 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 Y D + +PF + +NG + ++++ D + K L + P+ Sbjct: 96 NYGNILPDWIRAWKTPLPFIFLSNGET----------LLFKNMHDEKPSYKVLKKMLTPK 145 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 +++++ G + + P + GLR Q +A+ +E + +G ++ L+ +ATG GK Sbjct: 146 DIVKLAGGDIDSEYAKLPSIPAVGSKGLRECQFEAITKLELSFKQGFKKALIVLATGAGK 205 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI--NGDTFNSIFDIKGLTD 535 T TA +RL+ KR+LFLVDR +LG+QA G F ++ G+ F+ + + L Sbjct: 206 TFTACTAAYRLLNYTSAKRVLFLVDRNNLGKQAEGEFGTYKLTETGNPFSDEYIVHRLKS 265 Query: 536 KFPEDSTKIHVATVQSLVK-------------RTLQSDEPMPVAR-------------YD 569 + + ++T+Q L +DE P R +D Sbjct: 266 VEKIGNASVVISTIQRLFAVLTGQEINDAGDDEETDNDENAPGKRIQFTGNILLPPDFFD 325 Query: 570 CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-IALTATPALHTVQI 628 I++DE HR D +R++L +F+ K I LTATP Sbjct: 326 VIIIDECHRSIYGD-------------------WRQVLTYFNNAKIIGLTATPTPEAEAF 366 Query: 629 FGEP-VYRYTYRTAVIDGFLIDQDPP--IQIITRNAQEGVYLSKGEQVERISP-QGEVIN 684 F + V YT ++ DG + PP +I T ++ G + GE+++++S G+ Sbjct: 367 FNKNRVVNYTLEKSIADGVNV---PPRVYRIKTEISESGGTIKDGEKIKKVSNWSGKRKT 423 Query: 685 DTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL----------DPTGSQKTLVFCVTN 734 +D+ F D +R +VIPA V + + D T KTL F T Sbjct: 424 QKQHEDRQFTKTDIDRSVVIPAQIETVVQAYKDSIYESLYPDRKKDWTMIPKTLFFAKTE 483 Query: 735 AHADMVVEELRAAFKKKYPQ---LEHDA--IIKITGDADKDARKVQTMITRFNKERLPNI 789 HA+ +++ ++ FK ++P EH A I +G++++ +I+ F + I Sbjct: 484 NHAEDILKAIKKVFKNEFPNGEIPEHYAQLITCKSGNSNQ-------LISDFRNNKDFRI 536 Query: 790 VVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 +TV L+ TG DI + +VF+R + S +LY QMKGR R Sbjct: 537 AITVTLVATGTDIRPLEILVFMRDIHSEVLYTQMKGRGCR 576 >UniRef50_D1XTB5 Type III restriction protein res subunit n=2 Tax=Streptomyces RepID=D1XTB5_9ACTO Length = 1153 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 233/887 (26%), Positives = 372/887 (41%), Gaps = 185/887 (20%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHL---GLLLNIPPCEN 61 SNF FL+ + A AE DP + R E + L +P + Sbjct: 2 SNFGFLQAEWPGLHREAVHAERLAYADPRASAFYARRVLELAVTWMFEADDALKLPYQND 61 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVWYYR 120 L+ E + I + +RR GN AVH DA + F + W R Sbjct: 62 LAALIAEPTLVKVAGPAIRAKMDVIRRQGNAAVHRKTPITPKDAVRTVAELFHVLYWMAR 121 Query: 121 LVTKD-YDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALN 179 T+D PV + + + + +VR QAE+ Q +K + Sbjct: 122 TYTRDQAQLPVSTLAF----------DTALIPRPVPAEVR--VAKQAELRVQAEKYAEQD 169 Query: 180 GYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLN 239 +A K Q+ +A+ +A L AQ+ K A+ A + + + Y+++ Sbjct: 170 TALAAERKKNQDLDAE----IADLRAQV--KAAKAANEAQPDTHDYNED----------- 212 Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 E + +ID L++AGW D R P G+ + A P+GK G DY Sbjct: 213 ---ETRKLIIDLLLKEAGWALDLPRDR----EYPVTGLPTSAA--PSGK------GKVDY 257 Query: 300 VLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ KP+AVVEAKR D ++ Y+ + F Sbjct: 258 VLWDDDGKPLAVVEAKRTTRDPKQGKYQATLYADALEAQF-------------------- 297 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 KQR P + TNG YR + R+V+ ++ +E Sbjct: 298 ----------KQR---PVIFYTNG--YRTYLFDDLNYPPREVQG----------FYTKDE 332 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ-QEILLAMATGTGK 477 L ++ ++N A P ++ R+YQ A+R + + K ++ LL MATG+GK Sbjct: 333 LRLLVQRRASRRN--LAKMPINEQIAGRHYQSRAIRRIADSFEKDSLRQALLVMATGSGK 390 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TRT I++ ++++ KRILFL DR++L +QA F+ + N L +K Sbjct: 391 TRTVISLSDLMMRANWAKRILFLADRKALVKQATNEFKKHLPGANPVNL------LEEKD 444 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEP----MPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 P +++ V+T +++ Q+D +D IV+DEAHR Sbjct: 445 PH--SRVFVSTYPTMMNLIDQTDADGRRIFGPGFFDLIVIDEAHR--------------- 487 Query: 594 RSQLDYVSAYRR---ILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAV 642 S Y+R I D+FD++ + LTATP +T + F G P Y+ AV Sbjct: 488 -------SIYQRYGAIFDYFDSLLVGLTATPKDEVDRNTYRRFELEDGVPTDVYSLDEAV 540 Query: 643 IDGFLIDQ---DPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVAD-- 697 +G+L+ D P++ Q G G + + +S + + D E ++D +V D Sbjct: 541 AEGYLVAPRAVDVPLKF-----QRG-----GIKYDDLSEEDKEKWDETEWNEDGDVPDEI 590 Query: 698 ----FNRGLV-IPAFNRAVCNELTNYLDPTGSQK---TLVFCVTNAHADMVVEELRAAFK 749 N+ L ++ + +T+ L G K T+VF N HA+ + E F Sbjct: 591 TTEELNKYLFNADTVDKVLQTLMTHGLKVDGGDKLGKTIVFAANNNHAEFIAER----FD 646 Query: 750 KKYPQLEHDAIIKITGDADKDARK--VQTMITRF-NKERLPNIVVTVDLLTTGVDIPSIC 806 K YP L+ IT RK Q++I +F + LP I ++VD+L TG+D+P + Sbjct: 647 KNYPHLKGAFAQVIT------YRKEYAQSLIDKFSDAAELPQIAISVDMLDTGIDVPEVV 700 Query: 807 NIVFLRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFD-CVDI 847 N+VF + VRS+ + QM GR TRL P++ +K F +FD C +I Sbjct: 701 NLVFFKLVRSKTKFWQMIGRGTRLAPDLFGPNRSKDGFLVFDLCQNI 747 >UniRef50_B3CDF9 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CDF9_9BACE Length = 1116 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 198/717 (27%), Positives = 307/717 (42%), Gaps = 141/717 (19%) Query: 239 NLSEEESRFL-IDAQLRKAGWQADSKTLRFSKG--ARPEPGVNKAIAEWPTGKDETGNQG 295 +LSE E+R L ID L +A W+ KG + G+ + P +E+G G Sbjct: 192 DLSEAETRKLYIDLLLHEADWKVSEH-----KGEIIPRQAGIEIEVQGMP---NESG-VG 242 Query: 296 FADYVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 +ADYVLF P+AVVEAKR ++D +++ Y+ C L Y+ Sbjct: 243 YADYVLFDADGTPLAVVEAKRTSVDATVGRHQAELYADC---------LATRYTCSR--- 290 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 P Y TNG E GI Y S+ + +H Sbjct: 291 --------------------PVIYYTNGFETHLI----DGIGYP--------SRKVMGFH 318 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 +EL M+ Q+ D ++ R YQ+ + +V K + LL MATG Sbjct: 319 TIDELRRMIA---QRGRNDITDLQISDKITNRNYQKRVIESVCKHYNDKHRRALLVMATG 375 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLT 534 TGKTR +I+++ L+++ K +LFL DR L QA DT++ + + L Sbjct: 376 TGKTRVSISLVDVLVRNNWVKNVLFLADRIELVNQAKK--NDTKLLPN-----MTVSSLR 428 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 D + S +I +T Q+++ + + + R+D I++DEAHR Sbjct: 429 DSDVDISARILFSTYQTMIGHLDRDAKTFSLGRFDLIIIDEAHRSVF------------- 475 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFG----EPVYRYTYRTAVIDGF 646 Y I ++FD + + LTATP T +FG EP Y Y AV DG+ Sbjct: 476 ------GKYGAIFEYFDCLLLGLTATPRDEVDRSTYDLFGMEQGEPTDSYEYDEAVADGY 529 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG----------EVINDTLEDDQDF--- 693 L P + I N++ L+ G E+++P+ E + LE D + Sbjct: 530 L----NPFRAIKDNSK---ILTTGIDPEQLTPEERKQLEEIFEYEKMKAGLEPDDPYSRT 582 Query: 694 ----EVAD--FNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAA 747 E+ FN+ V NR + N+ D T KT++F + HA + E Sbjct: 583 INATEIFKYIFNQNTVDHVLNR-LMNDGIRVKDNTLIGKTIIFAYNHKHAVFIAER---- 637 Query: 748 FKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICN 807 F YP L D ++ + +K + + +K+ P I V+VD+L TG+D+P I N Sbjct: 638 FAALYPDLGSD-FCRVIDNYEKYSSDLLDKFADVSKQ--PQIAVSVDMLDTGIDVPEIVN 694 Query: 808 IVFLRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFDCVDIYSTLESVDTMRPVVV 862 +VF + + S+I + QM GR TRLC + +K F IF D Y E + M P Sbjct: 695 LVFFKPIHSKIKFWQMIGRGTRLCENLFGEGQHKKEFLIF---DFYRNFEYFE-MHPEGA 750 Query: 863 RPKVELQTLVNEITDSET-YKITEADGRSFAEHSHEQLVAKLQRIIG--LATFNRDR 916 RP + Q++V+ I + T K DG+ + + L I+ +A NR+R Sbjct: 751 RP-TKSQSIVSLIFNLRTDIKFALQDGKYQSNEEAKAFHNDLADILHQQIAALNRNR 806 >UniRef50_Q112D5 Type III restriction enzyme, res subunit n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q112D5_TRIEI Length = 1119 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 229/924 (24%), Positives = 379/924 (41%), Gaps = 207/924 (22%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHL---GLLLNIPPCEN 61 SNF+FLK + A AE + P + R E L L +P N Sbjct: 3 SNFDFLKPHYPKLHQTATQAETLINNAPRASCFYTRYTLEQAVIWLYENNPYLELPKTYN 62 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLN-DAQMCLRLGFRLAVWYYR 120 L+ E + +N+ + +IGN A H+ + DA+ ++ + W R Sbjct: 63 LGALIHEQTFKDNLQNNLFPKLRIIHKIGNAAAHDPKPITSKDARYLIQELYHFLYWLTR 122 Query: 121 LVTKDYDFPVPVFVLPERGENL----YHQEVL---TLKQQLEQQVREKAQTQAEVEAQQQ 173 + D G+NL ++ +++ T K L ++ +TQ + Q Sbjct: 123 YYSPD-------------GKNLPNLKFNPDLIPTSTTKSDLTLDKLQQLETQLSTAQEMQ 169 Query: 174 KLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQA 233 + I E K+++T A+ + A L AQL ++N QT+ +R Y ++A Sbjct: 170 R---------IAEQKEKQTTAELETAKAEL-AQLKQQN-----QTKSDRHDY-----NEA 209 Query: 234 IKRTLNLSEEESRFLIDAQLRKAGWQAD-SKTLRFSKGARPEPGVNKAIAEWPTGKDETG 292 RT +L+D L++AGW ++ + P +ETG Sbjct: 210 DTRT---------YLLDILLKEAGWPIHLPESTEYQVTGMP---------------NETG 245 Query: 293 NQGFADYVLFVG--LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPD 350 +G DYV F G P+A+VEAKR +++ Y+ C F Sbjct: 246 -KGKIDYV-FWGDDGNPLAIVEAKRTRKSPQTGQHQAKLYADCLQAEFNHR--------- 294 Query: 351 EVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKAL 410 P + +NG E+ W D D + + Sbjct: 295 ------------------------PVIFYSNGYEH----------WIWD--DFNYPPRPI 318 Query: 411 PEWHRPEELLEMLGSEPQKQNQWFAD-NPGMSELGLRYYQEDAVRAVEKAIVKGQQEILL 469 + + +EL ++ +Q D NP ++ R YQ++A+ +++ Q++ LL Sbjct: 319 QGFLKKDELERLIFRRSHRQPLHTLDVNP---DIAGRCYQKEAICCIKEIFDNKQRKALL 375 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 MATGTGKTRTA++++ L ++ KR+LFL DR L QA G F NSI Sbjct: 376 VMATGTGKTRTAVSIVELLERANWVKRVLFLADRNVLLTQAQGVF------NSNLNSITT 429 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSD---EPMPVARYDCIVVDEAHRGYILDKEQ 586 K ++ I +T ++ R +D +D ++VDEAHR Sbjct: 430 ANLTEKKQDAENATIVFSTYPTISNRINATDGDKRLFSPGYFDLVIVDEAHRSI------ 483 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH----TVQIF----GEPVYRYTY 638 +R YR+I +FDA+ + LTATP T IF G P + Y Sbjct: 484 ------YRK-------YRQIFQYFDALLLGLTATPRNEVDRDTYSIFDLEPGVPTFAYEL 530 Query: 639 RTAVIDGFLIDQDPP--IQIITRNAQEGVYLSKGEQVERISPQ--------GEV---IND 685 +A+ DG+L+ PP +++ + + G+ S+ + E+ + + GEV IN Sbjct: 531 DSAIKDGYLV---PPSGVEVPFKFMRAGIRYSELQPEEKTAYEERFADAETGEVPDKINA 587 Query: 686 TLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELR 745 T + F ++ ++ L + R + E + L KT++F + HA+ + E Sbjct: 588 TALNTWLFNISTVDQALQL-LMERGLKVEGGDRLG-----KTIIFARNHKHAEFISERFN 641 Query: 746 A---AFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDI 802 A +K ++ Q+ D + N ++ P I V+VD+L TGVD+ Sbjct: 642 ANYPHYKGQFAQIIDSQSSYSQSLLDDFS----------NADKQPIIAVSVDMLDTGVDV 691 Query: 803 PSICNIVFLRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFDCVDIYSTLES---- 853 + N+VF + V SRI + QM GR TRLCP + +KT F +FD +S E Sbjct: 692 REVVNLVFFKPVYSRIKFNQMIGRGTRLCPNLFAPGDDKTEFLVFDLCSNFSYFEQQIDE 751 Query: 854 -----VDTMRPVVVRPKVELQTLV 872 D++ +V+ ++EL LV Sbjct: 752 KNVKIPDSLTTKLVKSRLELSQLV 775 >UniRef50_A6DQ75 Type I restriction-modification system R subunit (Endonuclease) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQ75_9BACT Length = 1138 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 227/883 (25%), Positives = 374/883 (42%), Gaps = 177/883 (20%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQHD 64 SNF F+K + Y + AE + D R+ E K L +N P + Sbjct: 2 SNFTFIKDIFPEVYELGVKAEEHLKQDKRACAFYCRLTLEVAVKWL--FINDPNLIQPYK 59 Query: 65 LLRELGKIAF-------VDDNILSVFHKLRRIGNQAVHEYHNDLNDAQM--CLRLGFRLA 115 + LG+ + V ++ H ++GN A H L + ++ L F Sbjct: 60 P-KGLGEFVYAPGFQQLVPRDVNDGVHFAIKVGNHAAHS-KGALREYELVTALEAVFSFV 117 Query: 116 VW---YYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQ 172 W YY K+ F + P EV LKQ+ +Q+ K + + E Q Sbjct: 118 KWLAHYYTDAEKNIAFDLKNIPDPT-------AEVKGLKQEEAKQLALKFKDHFQKELDQ 170 Query: 173 QKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAK-QTEQERKAYHKEITD 231 ++++ E QA L + E ++ AELA +T E++ + + Sbjct: 171 --------------ARERDEENLKQASLRS-EQEIKNLKAELAALKTINEQETFESD--- 212 Query: 232 QAIKRTLNLSEEESRFL-IDAQLRKAGWQ---ADSKTLRFSKGARPEPGVNKAIAEWPTG 287 + +EEE+R L ID L++ GW A+ K + + G+ KA G Sbjct: 213 ------FDPNEEETRTLYIDLLLKEVGWNLEGANDKEYKVT-------GMPKA------G 253 Query: 288 KDETGNQGFADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEH 346 K+++G G+ DYVL+ KP+AVVEAKR D ++ Y+ C + Sbjct: 254 KNKSG-IGYVDYVLWGDNGKPLAVVEAKRTMRDAKEGKQQAKLYADCLE----------- 301 Query: 347 YSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNM 406 K + P + TNG E + IW DT+ Sbjct: 302 ----------------------KMHGQRPILFYTNGFE--------TFIW----DDTQYP 327 Query: 407 SKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQE 466 +++ ++ +EL ++ Q+ + + + R YQE A++ V + + ++ Sbjct: 328 DRSVYGFYTKKELETLIERRYQRASIYSLSVD--KNIAGRPYQERAIKKVLETFEEKRRR 385 Query: 467 ILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNS 526 LL MATG+GKTRTA+A++ L + KRILFL DR++L QA+ R + + Sbjct: 386 ALLVMATGSGKTRTAVALVKCLTEGNWCKRILFLADRKTLVGQAM------RKSFRPYLP 439 Query: 527 IFDIKGLTDKFPEDSTKIHVATVQSLVKR--TLQSD--EPMPVARYDCIVVDEAHRGYIL 582 + L + + +++ +T Q+++ + L D V +D I++DE+HR Sbjct: 440 NLSMVNLLKEEENNKSRMVFSTYQTMINKIDVLNEDGTRQYGVGHFDLIIIDESHRS--- 496 Query: 583 DKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVY 634 S Y I D+FDA + LTATP +T + F G+P Sbjct: 497 ----------------IYSKYGAIFDYFDANLVGLTATPLDQRDRNTFETFDLPDGQPTD 540 Query: 635 RYTYRTAVIDGFLID---QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ 691 Y+ + AV D FL+ + P ++ +R G+ S+ E+ + E D L D Sbjct: 541 VYSLKDAVDDKFLVMYKLKKPDLKFPSR----GIKYSELPPEEQAHYE-ETFTDELTDVI 595 Query: 692 DFEVAD--FNRGLVIPAFNRAVCNEL-TNYLDPTGSQ---KTLVFCVTNAHADMVVEELR 745 EV N+ L R V ++L T + G KT+VFC + HA+ VVE Sbjct: 596 PEEVKGEAVNKWLFNEDTVRKVLDKLMTEGIKVEGGDKLGKTIVFCRSRQHAEYVVE--- 652 Query: 746 AAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSI 805 F + YP ++ + D + QT++ + +P I V+VD++ TG+D+P + Sbjct: 653 -VFDRMYPAYS-GHFCQVVHNKCYDPQ--QTILDFEKPQLMPQIAVSVDMMDTGIDVPEV 708 Query: 806 CNIVFLRKVRSRILYEQMKGRATRLC-----PEVNKTSFKIFD 843 N+VF + V+S+ + QM GR TR C P +K F+IFD Sbjct: 709 VNLVFFKSVKSKSKFWQMIGRGTRTCENLFGPGKDKKDFRIFD 751 >UniRef50_Q1GLF8 Type I restriction-modification system restriction subunit n=7 Tax=root RepID=Q1GLF8_SILST Length = 1130 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 215/835 (25%), Positives = 352/835 (42%), Gaps = 186/835 (22%) Query: 90 GNQAVHEYHNDLN--DAQMCLRLGFRLAVWYYRLVTKDYDFPVPVFVLPERGENLYHQEV 147 GN+A H+ + DA +R F + W R KD P+ Sbjct: 90 GNRAAHDSGKPIKPQDAAAVVRELFHVCYWMARTYAKD--------AKPDSSLQFD---- 137 Query: 148 LTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQL 207 +LE+ + A T A+++A ++K + + L+ + A + R LEA+L Sbjct: 138 ---ASKLEKTLTISASTVAQIQALKEKH---DAHAKALKDAEAAALASEEGR-KRLEAEL 190 Query: 208 AEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESR-FLIDAQLRKAGWQADSKTLR 266 A+ AE+ K+ Q + A++ + +E +R ID L +AGW D + R Sbjct: 191 AQVRAEI-KEIRQ---------ANTAVQDDHDYNEAATRDAFIDLLLNEAGWPLDQERDR 240 Query: 267 FSKGARPEPGVNKAIAEWP-TGKDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARL 324 E+P +G +G DYVL+ KP+A+VEAKR D Sbjct: 241 ----------------EFPVSGMPNDKGEGLVDYVLWGNDAKPLALVEAKRTMKDSRIGQ 284 Query: 325 NESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGRE 384 ++ Y+ C + + R P ++TNG E Sbjct: 285 QQAKLYADCLETMYGRR---------------------------------PVIFTTNGYE 311 Query: 385 YRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELG 444 + +W + R +S L R E +L +K + + G++ Sbjct: 312 H--------WLWDDQMYPPRRVSGFL---KRDELVLLHQRRGTRKSLDGVSVDQGIAG-- 358 Query: 445 LRYYQEDAVRAVEKAIVKGQQ-EILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDR 503 R+YQ+ A+R V +A + +Q + LL MATG+GKTRT IA++ +L+++ +R+LFL DR Sbjct: 359 -RFYQQRAIRRVGEAFERDRQRKALLVMATGSGKTRTVIALIDQLMRANWVRRVLFLADR 417 Query: 504 RSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVA-----TVQSLVKRTLQ 558 +L +QA AF+ + N + + D D + + T+ L+ Sbjct: 418 VALVKQAHNAFKTHLPTAASANLLKN----HDPARNDHSGARICLSTYPTMLGLIDDVKG 473 Query: 559 SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALT 618 ++ +D IV+DEAHR +R YR I D+FD + + LT Sbjct: 474 GEKQFGPGHFDLIVIDEAHRSV------------YRK-------YRAIFDYFDGLLVGLT 514 Query: 619 ATPALH----TVQIF----GEPVYRYTYRTAVIDGFLIDQDPP--IQIITRNAQEGVYLS 668 ATP T +F G P Y AV D +L+ PP I + + ++G+ Sbjct: 515 ATPREEIDRDTYSLFELERGIPTDSYDLEDAVADEYLV---PPRSISVPLKFQRDGI--- 568 Query: 669 KGEQVERISPQGEVINDTLEDDQD------FEVADFNRGLVIPAFNRAVCNELTNYLDPT 722 + +S + + D +E D + E AD NR L FN+ +++ +L Sbjct: 569 ---DYDSLSDEEKAEWDAIEWDDEGAVPDRVEAADLNRWL----FNKDTVDKVLEHLMTN 621 Query: 723 GSQ--------KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV 774 G + KT++F + HA +VE F YP + + D Sbjct: 622 GIKVAGGDRLGKTIIFAKNSDHAKFIVER----FDANYPHY----MGQFARLIDYSVTYA 673 Query: 775 QTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC-- 831 Q++I F++ E P+I V+VD+L TG+D+P + N+VF + VRS+ + QM GR TR C Sbjct: 674 QSLIDDFSEAEEAPHIAVSVDMLDTGIDVPEVVNLVFFKIVRSKTKFWQMVGRGTRTCED 733 Query: 832 ---PEVNKTSFKIFD-CVDI-----YSTLESVDTMRPVVVR---PKVELQTLVNE 874 P +K F IFD C ++ + T RP+ R +VEL + ++E Sbjct: 734 LFGPGQDKQEFIIFDFCQNLEFFNENPKITDSPTARPIGERLFVSRVELISALDE 788 >UniRef50_A4T8B3 Type III restriction enzyme, res subunit n=6 Tax=Mycobacterium RepID=A4T8B3_MYCGI Length = 907 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 172/659 (26%), Positives = 280/659 (42%), Gaps = 128/659 (19%) Query: 241 SEEESRFLIDAQLRKAGWQADSK---TLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 +E +R LID+QL +AGW K L ++G V K G Sbjct: 12 AEARARKLIDSQLTQAGWVVQDKKDLNLFAAQGVAVREVVMKP------------GHGRV 59 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY+L+V + V+EAK V L+ S + +G P +V A Sbjct: 60 DYLLYVDKAVVGVIEAK----PVGTPLSGVEWQSAMYADGL----------PADVRIA-- 103 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 + + ++PF + +G E T +G D ++ + RPE Sbjct: 104 ---------AKTRDGRLPFVFEASGVETHFT----NGF------DPEPRARLIFNVPRPE 144 Query: 418 ELLEMLGSEPQKQNQ--WFADN---PGMSELGLRYYQEDAVRAVEKAIVKGQQE-ILLAM 471 + L + W A P + LR Q +A+ VE+++ + + L+ M Sbjct: 145 TMARHLREAETNPDSPTWRAKVRKLPALDTEALRPAQIEAINGVEQSLADQRYDRSLVQM 204 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI--NGDTFNSIFD 529 ATG GKT TA+ +RL++ R+LFLVDR +L +Q LG F++ R +G F +++ Sbjct: 205 ATGAGKTFTAVTQSYRLLKHGGVDRVLFLVDRNNLADQTLGEFQNYRTPDDGRRFTELYN 264 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVK-----------------------RTLQSDEPMPVA 566 + L+ STK+ ++T+Q + + T+ + +P Sbjct: 265 VNKLSSAGLLGSTKVTISTIQRVFRFIKAGEVSDTDDPDIDDYIPDAPVTVSYSDALPPE 324 Query: 567 RYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTV 626 +D ++VDEAHR +R +L++FDA + LTATP T Sbjct: 325 TFDLVIVDEAHRSIY-------------------GVWRGVLEYFDAHVVGLTATPGKQTF 365 Query: 627 QIFGEP-VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG-EVIN 684 F + V YTY +V DG +D D +I T+ + +G ++ G V ++ + E Sbjct: 366 AFFRQNLVSDYTYPESVADGVNVDFD-VYRIRTKISDQGSHIEAGTIVPKVDRRTREQRL 424 Query: 685 DTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL------DPTGSQKTLVFCVTNAHAD 738 +TL+DD D+ +R + R V + L + KTL+F + HA+ Sbjct: 425 ETLDDDLDYVPGQLDRAVTATDQIRTVLESFRDRLFTEIFPGRSTVPKTLIFAKDDNHAE 484 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 +V+++R F K +D KIT +AR + + F I VTVD++ T Sbjct: 485 EIVKQVREVFGKG-----NDFAAKIT----YNARNAKEQLKAFRTSPSLRIAVTVDMIAT 535 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN----------KTSFKIFDCVDI 847 G D+ + + F+R VRS +EQMKGR R P+ + KT F I D + + Sbjct: 536 GTDVKPLECVFFMRDVRSAQYFEQMKGRGARTVPDADFQAVTPDATSKTRFVIVDAIGV 594 >UniRef50_A8ZY57 Type III restriction protein res subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZY57_DESOH Length = 787 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 179/645 (27%), Positives = 262/645 (40%), Gaps = 183/645 (28%) Query: 248 LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKP 307 LI+ L KAGWQ DS+ G+ + T DET ADYVL P Sbjct: 12 LIEPALTKAGWQWDSQVT---------IGLGRVNITGDTMYDET-QTIIADYVLRYYGAP 61 Query: 308 IAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTS 367 + V+EAK +I + + RY+ Sbjct: 62 LVVLEAKAESISAADGMQQGSRYAG----------------------------------- 86 Query: 368 GKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEP 427 R I F +TNG ++ T SG + + L PE +L G Sbjct: 87 ---RLDIRFSIATNGTDWVLT-DNDSGKY-----------ETLSAPPSPEAILTHHGISI 131 Query: 428 QKQNQW---FADNPGMSELG---LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTA 481 +QW F+ + ++ +R YQ+ A+ G LL MATGTGKT Sbjct: 132 D-WDQWGEVFSAGYHIDQVSRKVVRPYQDVAIHKTLWHFAGGNNRALLLMATGTGKTFVV 190 Query: 482 IAMMFRLIQSQRFKR--ILFLVDRRSLGEQALGAF------EDTRINGDTFNSIFDIKGL 533 ++++L+ + KR ILFL DR SL +QA AF E IN DT + G Sbjct: 191 FQLVWKLLNTSILKRQHILFLTDRNSLKDQAYRAFAAFSTDERVTINKDTVANGQHQVG- 249 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVAR---------YDCIVVDEAHRGYILDK 584 K+ A Q+L DE + + +D +++DE HR D Sbjct: 250 ---------KVFFANYQNL-------DEELDGKKIFEHYDQDFFDLVIIDECHRSGFGD- 292 Query: 585 EQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA---------------LHTVQI 628 + +L+HF+ A+++ LTATP T + Sbjct: 293 ------------------WFGVLEHFNSALQMGLTATPRELEEGRRVLTEEEKRRDTYEY 334 Query: 629 FGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLE 688 FG P+Y Y+ + A+ DG+L+ YL + E++ + +G T Sbjct: 335 FGAPIYTYSLKQAIEDGYLVP----------------YLLE-ERITNVDEEGY----TGL 373 Query: 689 DDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTG--SQKTLVFCVTNAHADMVVEELRA 746 D + + A+F R + +P A+ +L L +K++VFCV + HA + ELR Sbjct: 374 DGKHYTTANFERDIRMPDRTTAIAEDLWEILGQYDLRDEKSIVFCVDDTHAAFMAAELR- 432 Query: 747 AFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKER--------LPNIVVTVDLLTT 798 +++GD D R V++ ER P + VTVDLLTT Sbjct: 433 ---------------RLSGDDDYAGRIVRSERNSHQLERNFATVGSTKPRVAVTVDLLTT 477 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 G D P + NIVF+R +RS ILY+QMKGR TRLC ++NK F IFD Sbjct: 478 GFDAPDVKNIVFVRPLRSAILYKQMKGRGTRLCEDINKRYFTIFD 522 >UniRef50_B8CZR6 EcoEI R domain protein n=5 Tax=Firmicutes RepID=B8CZR6_HALOH Length = 770 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 177/625 (28%), Positives = 272/625 (43%), Gaps = 136/625 (21%) Query: 249 IDAQLRKAGWQADSKTLR---FSKGARPEPG--VNKAIAEWPTGKDETGNQGFADYVL-F 302 I ++ AGW + + LR F+ G G VN+A + ADY+L + Sbjct: 13 ITPAIQNAGWDINKQVLREYSFTDGRVIVRGKLVNRAKPKR------------ADYILQY 60 Query: 303 VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETS 362 P+A++EAK++ + + A + ++ Y++ D Sbjct: 61 KSNIPLAIIEAKKDTLPIGAGMQQALEYAEILD--------------------------- 93 Query: 363 WQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEM 422 IPF YS+NG+ G D R AL ++ PEEL Sbjct: 94 -----------IPFVYSSNGK----------GFIEHDRNSGREKEIALEDFPSPEELWGR 132 Query: 423 LGSEPQ---KQNQWFADNP--GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 + + +Q Q + + ++ RYYQ A+ +AI KGQ+ ILL MATGTGK Sbjct: 133 FSKQKEFTREQEQLYLQDYFYQINYKTPRYYQRVAINRAVEAIAKGQKRILLVMATGTGK 192 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 T TA ++ RL ++ + KRILFL DR L +Q + D GD I +G Sbjct: 193 TFTAFQIIHRLWKAGKKKRILFLADRNILVDQTITG--DFSPFGDKMIKI--QRGNVSHA 248 Query: 538 PEDSTKIHVATVQSLV-----KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQ 592 E I++A QS+ ++T + P +D +V+DE HRG Sbjct: 249 HE----IYLALYQSMTGPEEWQKTFEEYSP---DFFDLVVIDECHRG------------S 289 Query: 593 FRSQLDYVSAYRRILDHFD-AVKIALTATPA----LHTVQIFGEPVYRYTYRTAVIDGFL 647 R+ SA+R +L++FD A + LTATP + T FGEP+Y Y+ + + DGFL Sbjct: 290 ARAN----SAWRVVLEYFDQATHLGLTATPKEDADVSTQGYFGEPIYTYSLKQGIEDGFL 345 Query: 648 IDQDPPIQIITRNAQE---GVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVI 704 P +++ + G KG+ G V+ +D+++ V DF+R L++ Sbjct: 346 ----APYKVVRMGLDKDLMGFRPIKGQ----TDKYGRVM-----EDREYYVNDFDRELIL 392 Query: 705 PAFNRAVCNELTNYLDPTGSQ---KTLVFCVTNAHADMVVEELRAAFKKKYPQL---EHD 758 + V E+T YL KT+VFC HA E +R A + L + Sbjct: 393 EKRHELVAKEITRYLKEELQDRFAKTIVFCQDIEHA----ENMRQALVNENADLVKQNYK 448 Query: 759 AIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRI 818 +++ITGD + ++ I E P I T L+TTGVD + IV + S Sbjct: 449 YVMRITGDNPEAKIQLDNFIE--PSETYPVIATTSKLMTTGVDAQTCKLIVLDMTINSMS 506 Query: 819 LYEQMKGRATRLCPEVNKTSFKIFD 843 ++Q+ GR TRL P+ K F I D Sbjct: 507 EFKQIIGRGTRLRPDYGKYYFTILD 531 >UniRef50_C3NN84 Type III restriction protein res subunit n=1 Tax=Sulfolobus islandicus Y.N.15.51 RepID=C3NN84_SULIN Length = 763 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 176/636 (27%), Positives = 272/636 (42%), Gaps = 158/636 (24%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG--FAD 298 +E ++ L D LRK GW + +F K N + + T N+G D Sbjct: 4 TEADAITLCDEHLRKLGWNLE----KFKK--------NHTLKDLFPNISFTENEGKHRPD 51 Query: 299 YVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 Y L +G K I ++EAK+ +D+ A + E+ +K +L Y + Sbjct: 52 YTLILGDKVI-LIEAKKKGVDLRAAIAEARESAK----------ILRKYGVN-------- 92 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 +P+ Y+ +G++ WY D + + + +PEE Sbjct: 93 ---------------VPYIYACDGQK-----------WYMQNLDANTVETQVERFLKPEE 126 Query: 419 LLEMLGSEPQKQNQWFADNP---GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 + L NP ++ L LR YQ+ AV+ + + + G++ +L+ MATGT Sbjct: 127 VSVTL-------------NPVSSSINALDLRNYQKIAVQQIITSFLSGKKRMLVEMATGT 173 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKT +A + +L+ + K +L+LVDR SL Q F + R+ GD +N I+ L+ Sbjct: 174 GKTEVVMAAIAKLLDEGKVKNVLYLVDRDSLATQTYQRF-NARL-GDKYN----IRKLSG 227 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYD---CIVVDEAHRGYILDKEQTEGELQ 592 + S I ++TVQ L DE + D IV+DEAHR Y D Sbjct: 228 DINDLSADIIISTVQ-----MLYVDEKFKLFNSDHFQLIVLDEAHRSYYGD--------- 273 Query: 593 FRSQLDYVSAYRRILDHFD-AVKIALTATPAL----HTVQIFGEPVYRYTYRTAVIDGFL 647 + +++ +F+ A + LTATP + FG P++RYTY V DG+L Sbjct: 274 ----------WHKVVQYFNKAAVLGLTATPKIDKDVDNFAYFGYPIFRYTYSRGVKDGYL 323 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAF 707 D +Y V+ I + DF+ D + + IP Sbjct: 324 ADT--------------IYYKFLTNVD--------IYGIHDLGYDFDPNDLGKKVDIPMR 361 Query: 708 NRAVCN---ELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT 764 N + E N+ + +K +VF + HA E LR AF +KY +L Sbjct: 362 NELIAEKYFEAINFKETKELKKAIVFAASIKHA----ENLRLAFIRKYNELM--GYSPDN 415 Query: 765 GDADKDARKVQTMITRFNKERL------PN----IVVTVDLLTTGVDIPSICNIVFLRKV 814 +A++ R + + I N E L PN + TVDLL+TGVD P + IV R Sbjct: 416 AEAEEIFRSIHSAIP--NHEELVREFQSPNSRIKVAFTVDLLSTGVDAPDVEVIVMARPT 473 Query: 815 RSRILYEQMKGRATRLCPEVNKT--SFKIFDCVDIY 848 +SR+LY QMKGR TR+ E NK F + D VD + Sbjct: 474 KSRVLYLQMKGRGTRIYKEGNKVKDKFYLIDFVDTW 509 >UniRef50_Q167L8 Type I restriction enzyme subunit, putative n=11 Tax=Bacteria RepID=Q167L8_ROSDO Length = 782 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 173/631 (27%), Positives = 261/631 (41%), Gaps = 135/631 (21%) Query: 249 IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF---ADYVLFVGL 305 ID L AGW+ K GAR V++ WP G Q ADYVL + Sbjct: 20 IDPALAAAGWEGAGKI----DGAR----VHREEMLWPGRIMSGGGQNAPKPADYVLRMKG 71 Query: 306 KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQD 365 +AV+EAK+ ++ ++ Y++ Sbjct: 72 HVMAVLEAKKASLSYTEGRGQALDYAR--------------------------------- 98 Query: 366 TSGKQRFKIPFCYSTNG-REYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLG 424 R F Y TNG R Y + T T +A+P P+ L E Sbjct: 99 -----RIGARFAYCTNGLRTYEIDLNT----------GTEGEVEAVPS---PDVLWERCY 140 Query: 425 SEPQKQNQWFADNPGMSELGL---RYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTA 481 F P ++ G RYYQ AV AV +A+ + ++ ILL +ATGTGKT A Sbjct: 141 PTGNAWRDRFGQIPFETDGGKWQPRYYQAAAVNAVLEALAQDEKRILLTLATGTGKTSIA 200 Query: 482 IAMMFRLIQSQ--------RFKRILFLVDRRSLGEQALGAFED------TRINGDTFNSI 527 + ++L QS+ R RILFL DR L +QA +F +RIN + Sbjct: 201 FQIAWKLFQSRWNLSGAPTRRPRILFLADRNILADQAYNSFSAFAPDALSRINPKEISK- 259 Query: 528 FDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY-----DCIVVDEAHRGYIL 582 KG K P +++ + Q+ + + Y D I++DE HRG Sbjct: 260 ---KG---KMPRNAS-VFFTIFQTFMTENKSGEAEFNFREYEPDFFDFIIIDECHRGGAK 312 Query: 583 DKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQIFGEPVYRYT 637 D+ S++R IL++F AV++ LTATP T FGEPVY Y Sbjct: 313 DE----------------SSWRGILEYFAPAVQLGLTATPKRKVNADTYTYFGEPVYTYA 356 Query: 638 YRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVAD 697 R + DGFL P ++ + Y+ P+ EV+ ++ D ++ + Sbjct: 357 LREGIDDGFLT----PFKVRQMASTIDTYV--------YDPEDEVVGGDVDPDHEYTEDE 404 Query: 698 FNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEH 757 N +VIPA ++ +E + ++P QKTLVFC T HA V + + + P Sbjct: 405 INAKIVIPAREQSRIHEFMDQINP--RQKTLVFCATQNHAAAVCDYINQIKDIEDPHYCE 462 Query: 758 DAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 ++ R+ Q N+ +P I+ T L+TGVD ++ NIV +R ++S Sbjct: 463 RVTANDGALGEQHLREFQD-----NERSIPTILTTSQKLSTGVDARNVRNIVLMRPIKSM 517 Query: 818 ILYEQMKGRATRLCPEVNKTSFKIFDCVDIY 848 + ++Q+ GR TR K F I+D V Y Sbjct: 518 VEFKQIVGRGTRTFE--GKDFFTIYDFVKAY 546 >UniRef50_C9KLJ8 Type I restriction-modification system, R subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLJ8_9FIRM Length = 772 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 168/589 (28%), Positives = 255/589 (43%), Gaps = 102/589 (17%) Query: 296 FADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 FADYVL+ P+AVVEAK NN + + ++ Y++ D Sbjct: 56 FADYVLYTESGHPLAVVEAKDNNHTISFGMQQAKAYAQMMD------------------- 96 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 +PF YS+NG G D +L + Sbjct: 97 -------------------LPFAYSSNG----------DGFVEYDFLTGIECELSLDAFP 127 Query: 415 RPEELLEML---GSEPQKQNQWFADNPGMSE--LGLRYYQEDAVRAVEKAIVKGQQEILL 469 P EL+ G ++Q + +SE RYYQ AV AI +GQ+ +LL Sbjct: 128 TPAELIARFKEEGHLTEEQVRVIEQPFYVSEGTFAPRYYQRVAVDRTLDAIARGQKRLLL 187 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 MATGTGKT TA +++RL ++ K+IL+L DR L +Q++ +D R + + Sbjct: 188 VMATGTGKTYTAFQIIYRLRKAGLGKKILYLADRNILVDQSIQ--QDFRPLASVIHKV-- 243 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQS--DEPMPVARYDCIVVDEAHRGYILDKEQT 587 D+ S +++ + Q L + E +D IVVDE HRG Sbjct: 244 NYASDDRTTITSYEVYFSLYQQLFGENDEERFRELFRPDFFDLIVVDECHRG-------- 295 Query: 588 EGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA----LHTVQIFGEPVYRYTYRTAV 642 ++ D S +R+ILD+FD A++I +TATP + + FGEPVY Y+ R + Sbjct: 296 ------SAKAD--SRWRKILDYFDTAIQIGMTATPKETAYVSNIDYFGEPVYTYSLRQGI 347 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 DGFL P ++I V ++ GE Q + +E D+ + D++ + Sbjct: 348 DDGFL----APFRVIN------VQMNIGEGWRPCKGQRDFFGREIE-DRVYNNTDYDYNI 396 Query: 703 VIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEEL---RAAFKKKYPQLEHD 758 V+ R V +TNYL T KT+VFC A A+ + L A KKYP + Sbjct: 397 VLEDRIREVAARITNYLLHTDRMAKTIVFCADEAAAERMRHALAQQNADMMKKYP----N 452 Query: 759 AIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRI 818 +++ITG ++ I+ + P I T LL+TGVD + IV + S Sbjct: 453 YVVRITGSDPYGKSQLGYFISVASPT--PVIATTSQLLSTGVDCKMVRLIVLDENITSMT 510 Query: 819 LYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVE 867 +++Q+ GR TRL + K SF I D + D P++ P E Sbjct: 511 MFKQIIGRGTRLRYDEGKRSFVIMDFRGVTRLFADPDWDGPIIEDPGFE 559 >UniRef50_B8ECU5 Type III restriction protein res subunit n=5 Tax=Bacteria RepID=B8ECU5_SHEB2 Length = 1233 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 230/904 (25%), Positives = 371/904 (41%), Gaps = 221/904 (24%) Query: 62 QHD--LLRELGKIAFVDDNILSVFHKLR---RIGNQAVHEYHNDLN-DAQMCLRLGFRLA 115 +HD L+ + F D+ ++F KL+ +IGN+AVH DA ++ + Sbjct: 106 RHDATLMSLIHDQGFKDNLASNLFPKLKLIIKIGNEAVHGKSTPPQRDALQAVKELHHVL 165 Query: 116 VWYYRLVTKDYD---FPVPVF---VLPER---GENLYHQEVLTLK--QQLEQQVREKAQT 164 W+ R T D F + F ++P++ L + + ++K Q+LE+Q+ E Sbjct: 166 YWFMRTYTPTLDKTRFTIAPFDEALVPQKLAIDAGLVTKAISSIKRVQELEKQLAESDSI 225 Query: 165 QAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKA 224 + + + QQQ LN A+ Q L Q+A+ AKQ+ + Sbjct: 226 KRD-DYQQQ----LNENAALKAANQ------------VLLEQIAK-----AKQSADAAQD 263 Query: 225 YHKEITDQAIKRTLNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAE 283 H + +E E+R +LIDA L +AGW K R + Sbjct: 264 NH------------DYNETETRDYLIDALLDEAGWPLKDKRDR-----------EYPVTT 300 Query: 284 WPTGKDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRET 342 P G DYVL+ +AVVEAKR + ++ Y+ C + Sbjct: 301 MPISDANPLGNGAVDYVLWGDDGTALAVVEAKRTSRRPEDGQQQAKLYADCLE------- 353 Query: 343 LLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRD 402 +Q P + +NG E + +W D Sbjct: 354 --------------------------RQCGVRPIIFYSNGYE--------TYLW----DD 375 Query: 403 TRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMS---------ELGLRYYQEDAV 453 + + ++ +EL M+ + +F+D+ G E+ R+YQ+ A+ Sbjct: 376 AFYPPRKVQGFYTKDELALMIKRRSDRV-AFFSDDKGKGKKLTAQISEEITNRHYQKAAI 434 Query: 454 RAVEKAI-VKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALG 512 + + ++ Q+++LL MATGTGKTRT I+++ L+++ K ILFL DR +L QA Sbjct: 435 THILQHFELEHQRKVLLVMATGTGKTRTVISLVDLLVKNDWIKNILFLADRNALLSQAKK 494 Query: 513 AFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIV 572 F ++ S+ D T+++L+ R D P V +D I+ Sbjct: 495 NF--VKLLPRVSCSVLSSGQSKDSIDSRLYFATYPTMKNLLDRG-ADDRPFGVGHFDLII 551 Query: 573 VDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQI 628 VDEAHR S YR+I D+FD + + LTATP T I Sbjct: 552 VDEAHRSV-------------------YSKYRQIFDYFDGLLVGLTATPKDEVEKDTYGI 592 Query: 629 F----GEPVYRYTYRTAVIDGFLIDQDPP--IQIITRNAQEGVYLSKGEQVERISPQGEV 682 F G P Y Y +A + +L+ PP I + T+ + GV + E++ + + Sbjct: 593 FDLPKGMPTYAYEDASAYAEKYLV---PPTKISVATKFLRNGVKYQELSDEEKLEWENKA 649 Query: 683 INDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL---DPTGS---------QKTLVF 730 L D ++ ++ N+ L FN ++ L D G KT++F Sbjct: 650 ---ELTDREEVLPSEVNKFL----FNEDTAEKMFAQLMSKDELGGIHVEGGDVIGKTIIF 702 Query: 731 CVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV-------QTMITRFNK 783 N HA L F K YP+ A K AR + Q++I F Sbjct: 703 AANNDHAVF----LEKIFNKNYPKW-----------AGKLARVITFKETYAQSLIDEFGG 747 Query: 784 E---------RLPN--IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 E + P I ++VD+L TG+D+P + N+VF + VRS++ + QM GR TRLCP Sbjct: 748 EENNCKDFDPKNPTCRIAISVDMLDTGIDVPEVVNLVFFKVVRSKVKFTQMVGRGTRLCP 807 Query: 833 EV-----NKTSFKIFDCVDIYSTLES------VDTMRPV---VVRPKVELQTLVNEITDS 878 + +KT+FKIFD + ++ V +PV V +V+L TL+N Sbjct: 808 NLFGPGDDKTTFKIFDYCQNFEFFDANPEGLPVGITKPVMQQVFEKRVQLSTLLNARLLD 867 Query: 879 ETYK 882 +TY+ Sbjct: 868 DTYR 871 >UniRef50_Q043T1 Type I site-specific restriction-modification system, R (Restriction) subunit related helicase n=14 Tax=Firmicutes RepID=Q043T1_LACGA Length = 1113 Score = 166 bits (419), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 181/677 (26%), Positives = 288/677 (42%), Gaps = 144/677 (21%) Query: 206 QLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESR-FLIDAQLRKAGWQADSKT 264 +L +KN L + +RKA D + +SE ++R IDA L +AGW Sbjct: 165 KLTKKNKSLQESMTAQRKAQE----DSYNPKPFGISEFKTRKIYIDAMLAEAGWVEGQNW 220 Query: 265 LRFS--KGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFV-GLKPIAVVEAKRNNIDVP 321 L KG + G+ G+ADYVL+ +P+A++EAK+ DV Sbjct: 221 LNEVELKGMPNKAGI-----------------GYADYVLYDDAHQPLALIEAKKTCKDVA 263 Query: 322 ARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTN 381 ++ Y+ + + R P + +N Sbjct: 264 VGRQQAKLYADLLEKKYGRR---------------------------------PVVFLSN 290 Query: 382 GREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQ---NQWFADNP 438 G E R + D + + + + +L ++ + +Q N DN Sbjct: 291 GFETR-------------IIDNQYPERQVSSIYSKRDLEKLFNLQKVRQPLTNIIVDDN- 336 Query: 439 GMSELGLRYYQEDAVRAVEKAIVK-GQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRI 497 + RYYQ+ A++AV ++ K +++ LL MATG+GKTRTA+ ++ L+ + K + Sbjct: 337 ----IAGRYYQKAAIQAVCESFSKENRRKALLVMATGSGKTRTAVGLVKVLLNAGWIKHV 392 Query: 498 LFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 LFL DR +L QA +F + + + N + D + + AT+ +++ Sbjct: 393 LFLADRDALVTQAKRSFVNLLPDLSSTNLVEDKSNYNARCVFST----YATMMNVIDTAT 448 Query: 558 QSDEP--MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI 615 D+ +D I+VDEAHR I +K YR I +FDA + Sbjct: 449 DDDKKKLYTAGHFDLIIVDEAHRS-IYNK------------------YRNIFTYFDAPLV 489 Query: 616 ALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYL 667 LTATP +T IF G P Y Y AV DG+L+ P + I + + ++ Sbjct: 490 GLTATPKDDIDKNTYSIFNLEDGVPTYGYDLAQAVDDGYLV----PYKSIETHLK---FM 542 Query: 668 SKGEQVERISPQ-GEVINDTLEDD-----QDFEVADFNRGLVIPAFNRAVCNELTN---- 717 G + +S Q E +T D+ + + N+ L R V N L N Sbjct: 543 ENGINYDDLSTQEKEEYEETFTDEDGDLPKKIDSGKLNKWLFNKDTIRKVLNILMNQGLK 602 Query: 718 --YLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDA-DKDARKV 774 Y + G KT++F + HA EE+ F ++YPQ + + D Sbjct: 603 IDYGEKIG--KTIIFAKNHRHA----EEILKVFNEEYPQFSRNTHGQPYATVIDNYTNYS 656 Query: 775 QTMITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE 833 Q+ I F + ++LP I V+VD+L TG+D+P N+VF +KV S+ + QM GR TRLCP Sbjct: 657 QSAIDEFSDPDKLPQIAVSVDMLDTGIDVPECLNLVFFKKVMSKAKFFQMIGRGTRLCPH 716 Query: 834 V----NKTSFKIFDCVD 846 + +K F IFD D Sbjct: 717 LLDGKDKQEFYIFDFCD 733 >UniRef50_D2LA91 Type I site-specific deoxyribonuclease n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LA91_9DELT Length = 798 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 185/655 (28%), Positives = 275/655 (41%), Gaps = 152/655 (23%) Query: 239 NLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 +L+E E+R LID L AGW + S+ R + + I G + Q A Sbjct: 8 DLNEAETRAELIDPVLAVAGW----GIVEGSRIRREKITNGRLI-----GGGKRSKQDIA 58 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DYVL + +AV+EAKR + + ++ RY+ T+L+ Sbjct: 59 DYVLVFHGQKLAVIEAKRVGLKDTEGVGQAKRYA----------TMLQAR---------- 98 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 F YSTNG+ GI+ D+ + + P+ Sbjct: 99 ------------------FAYSTNGK----------GIYQIDMHT--GAEGYVSSYPTPD 128 Query: 418 ELLEMLGSEPQKQNQW--------FADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILL 469 +L + S ++N W F D G E RYYQ +A+ +AI G+ ILL Sbjct: 129 QLWQ---STFAQKNTWRDRFAAIPFEDKGGSWEA--RYYQHNAINQALEAIAAGRDRILL 183 Query: 470 AMATGTGKTRTAIAMMFRLIQSQ-------------RFKRILFLVDRRSLGEQALGAF-- 514 +ATGTGKT A + ++L QS+ R RILFL DR L QA AF Sbjct: 184 TLATGTGKTFIAFQLAWKLFQSRWNLKDWKGGGEPSRRPRILFLADRNILASQAYNAFSA 243 Query: 515 --ED--TRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVAR--- 567 ED RI+ D KG+ K + I Q+ + + P P Sbjct: 244 FPEDALVRISPDAIRK----KGMVPK----NGSIFFTIFQTFMAGRDAAGNPAPNFGDYP 295 Query: 568 ---YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA- 622 +D IV+DE HRG D+ S +R IL +F AV++ LTATP Sbjct: 296 PDFFDFIVIDECHRGGANDE----------------SNWREILTYFSPAVQLGLTATPKR 339 Query: 623 ---LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQI--ITRNAQEGVYLSKGEQVERIS 677 + T FG+PVY Y+ + + DG+L P ++ I E VY + Sbjct: 340 KGNVDTYAYFGDPVYVYSLKEGINDGYLT----PFKVRQIATTLDEYVY----------T 385 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHA 737 VI +E+ + + +DFNR + I R + +D T QKTLVFC T HA Sbjct: 386 ADDNVIEGDIEEGRRYTESDFNRVIEIAERERYRVKLFMDMIDQT--QKTLVFCATQDHA 443 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 V + + + P D I++T + + + + + N + +P I+ T L+ Sbjct: 444 LAVRDCINQTKQNSDP----DYCIRVTANDGSEGER-WLRVFQDNDKTIPTILTTSQKLS 498 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLE 852 TGVD ++ NIV +R + S I ++Q+ GR TRL K F I+D V Y + Sbjct: 499 TGVDARNVRNIVLMRPINSIIEFKQIVGRGTRLFE--GKDYFTIYDFVKAYERFD 551 >UniRef50_C0E6A8 Putative uncharacterized protein n=1 Tax=Corynebacterium matruchotii ATCC 33806 RepID=C0E6A8_9CORY Length = 1158 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 241/898 (26%), Positives = 371/898 (41%), Gaps = 185/898 (20%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE--NQ 62 SNF F+ V AE + +P I+ R E H+ + N Sbjct: 7 SNFAFIGRVWPELLIHCRNAEQSAVSNPRVAGIEARFTLERLVDHIVEAYGLRSVSDWNL 66 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEY-HNDLNDAQMCLRLGFRLAVWYYRL 121 +D L V+ I + LRR GN A H H D A + F + VW Sbjct: 67 NDKLNHRSFKDRVNQRIHDKMNVLRRFGNDAAHNPDHIDPERAVRAIGQLFDILVWAAVN 126 Query: 122 VTKDYDFPVPVFVLPERGENLYH----------QEVLTLKQQLEQQVREKAQTQAEV--- 168 V + P+ LP ++ + QE+ L QQL++ V E T+ + Sbjct: 127 VARP---PLERTKLPTFDRSIVYNAPKQRQRSQQEIAKLNQQLQKAVDEIETTKLLLTER 183 Query: 169 -EAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHK 227 E +Q+ A IA +G +TE +AR LEA+LA+ A++A T + + Sbjct: 184 EETWRQERKAHLDQIAAFKG---QTEELARAR-DQLEAELAQLRADIAANTRSIDTSNNF 239 Query: 228 EITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTG 287 I++ E R LID L +AG+ AR +A+ Sbjct: 240 AISEA----------ETRRDLIDPALAEAGFNV----------ARGNLKTEFCLAD---- 275 Query: 288 KDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEH 346 +G DYVLF +P A+VEAKR K D G E+ Sbjct: 276 -----GKGVVDYVLFGDDGRPYAIVEAKRA--------------GKAIDAG---RQQAEY 313 Query: 347 YSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYR-----ATMK-TKSGIWYRDV 400 Y+ DE+ KQ P Y TNG E R A + +G Y Sbjct: 314 YA-DELE---------------KQFGLRPIIYYTNGHEIRLLDDAANLPGIGAGAGY--- 354 Query: 401 RDTRNMSKALPEWHRPEELLEMLGSEPQKQ--NQWFADNPGMSELGLRYYQEDAVRAVEK 458 S+A+ + +EL M+ Q+Q N D +++ R YQ ++AV + Sbjct: 355 -----PSRAVEGYATKDELYAMIRRRTQRQDLNTVSVD----TQIAGRPYQITMLQAVAE 405 Query: 459 AIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTR 518 G + LL MATGTGKTRTAIA++ +L Q+ K +LFL DR+SL +QA AF + Sbjct: 406 RFGAGHRRALLVMATGTGKTRTAIALVKQLAQAGWVKNVLFLADRKSLVKQAAEAFSEHL 465 Query: 519 INGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHR 578 + + + + G + +++ +T Q+++K L S ++D I+VDEAHR Sbjct: 466 RDMPVVDLLRNQHG--------TGQVYCSTYQTMMK-LLGSR--FGTYQFDLIIVDEAHR 514 Query: 579 GYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPAL----HTVQIF----G 630 +R Y RI D+FD++ + LTATP +T +F G Sbjct: 515 SI------------YRR-------YSRIFDYFDSLLLGLTATPRCDVDHNTYALFQLNDG 555 Query: 631 EPVYRYTYRTAVIDGFLIDQDPPIQ------IITRNAQEGVYLSKGEQVERISPQGEVIN 684 +P Y+ AV +G+L+ P + +I R+ LS EQ + + + + Sbjct: 556 QPTANYSLDEAVDEGYLV----PFKAFQCSSVILRDGVAYKDLSPEEQQQWENQDWGIDD 611 Query: 685 DTLEDDQDFEVAD-------FNRGLVIPAFNRAVCNEL-TNYLDPTGSQKTLVFCVTNAH 736 D L D EV +N+ + + +C+ + D G KT+ F + H Sbjct: 612 DGLPLDIPLEVESEEINLKLYNKDTIRKVVGQVLCHGIKVAGADRIG--KTIFFTRSKKH 669 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRF---NKERLPNIVVTV 793 A +V + + PQ+ I D+ +I RF K L ++ ++V Sbjct: 670 AQLVCD----IIHETNPQVRAAVITHEVYDS-------LDLIDRFKASGKGSL-DVAISV 717 Query: 794 DLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE-----VNKTSFKIFDCVD 846 D+L TGVD+P++ N+VF + V S + QM GR TRL P ++K F +FD D Sbjct: 718 DMLDTGVDVPAVVNLVFFKPVYSNTKFWQMIGRGTRLAPNLFGKGLDKREFYVFDYCD 775 >UniRef50_Q5NWL0 Type I restriction-modification system (Restriction subunit) n=4 Tax=Betaproteobacteria RepID=Q5NWL0_AZOSE Length = 714 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 134/447 (29%), Positives = 200/447 (44%), Gaps = 86/447 (19%) Query: 446 RYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRS 505 R YQ + + + I G++++L+ MATGTGKTRTA A + RL ++ R+LFLVDR Sbjct: 139 RDYQTACIDKLCQEITAGRRKLLVEMATGTGKTRTAAAFIKRLFEANAVTRVLFLVDRIP 198 Query: 506 LGEQALGAFEDTRINGDTFNSIFDIKGL-TDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L +Q AF + S F L T + +D +I + T+QS+V + Sbjct: 199 LAKQTEDAFAEHL-------SDFPAYVLRTGRRFQDEKRITITTLQSMVNIYHE----YS 247 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH 624 +D ++ DE HR + +L HFD +++ LTATP + Sbjct: 248 AGYFDLVISDECHRSIY-------------------GKWSGVLKHFDGIQVGLTATPCVA 288 Query: 625 TVQIFGE------------------PVYRYTYRTAVIDGFLIDQDPPIQI----ITRNAQ 662 + G+ P + Y + A+ DG+L+ P QI + A Sbjct: 289 NLGDLGDAEDKLFVRDTLRFFEVDKPTFSYKMKDAIHDGYLV----PYQIYKAKTVKTAA 344 Query: 663 EGVYLSKGEQVERISPQGEVINDTL--EDDQDFEVAD--------FNRGLVIPAFNRAVC 712 EG G +V+R ++ T E ++ FE +D R IP NRA+ Sbjct: 345 EG-----GFEVKRGELDWSAMDTTTRAEFEKLFEGSDAIVIDPNALERKFTIPERNRAIV 399 Query: 713 NEL-----TNYLDPTGS------QKTLVFCVTNAHADMVVEELRAAFKKKYPQLE-HDAI 760 E + D G KT+VF VT HA+ + + +AF + P E A Sbjct: 400 REFREVLEKGFTDAKGVVRKPLLGKTIVFAVTKRHAETLAQLFDSAFADQKPSPEVRYAD 459 Query: 761 IKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 ++G D T I RF KE P ++V+V++L TG D P + N+VF R RS ILY Sbjct: 460 YVVSGMGKDDTVDGMTKIKRFKKEPFPKVLVSVNMLDTGFDCPEVANLVFARFTRSAILY 519 Query: 821 EQMKGRATRLCPEVNKTSFKIFDCVDI 847 +QM+GR TR K F +FD V + Sbjct: 520 QQMRGRGTRKAK--GKPVFTMFDFVGV 544 >UniRef50_Q07736 Type I restriction enzyme EcoAI R protein n=63 Tax=cellular organisms RepID=T1RA_ECOLX Length = 810 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 169/635 (26%), Positives = 269/635 (42%), Gaps = 145/635 (22%) Query: 297 ADYVLF--VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 AD VL+ G+ P+AV+EAK N ++ + + Y++ D Sbjct: 60 ADIVLYHKPGI-PLAVIEAKANKHEIGKGMQQGIEYARLLD------------------- 99 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVR----DTRNMSKAL 410 +PF ++TNG G +RD + L Sbjct: 100 -------------------VPFVFATNG----------DGFIFRDATAAEGECLEKQITL 130 Query: 411 PEWHRPEELLEML--------GSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVK 462 ++ P EL + P ++ D G S RYYQ A+ +A+ Sbjct: 131 DDFPSPAELWQKFCLWKGYTQAQLPVITQDYYDDGSGKSP---RYYQLQAINKTIEAVSN 187 Query: 463 GQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALG------AFED 516 GQ +LL MATGTGKT TA +++RL +S+ KRILFL DR L +Q Sbjct: 188 GQNRVLLVMATGTGKTYTAFQIIWRLWKSKNKKRILFLADRNILVDQTKNNDFQPFGTAM 247 Query: 517 TRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVAR--YDCIVVD 574 T+++G T + ++ IH+A Q++ VA +D IV+D Sbjct: 248 TKVSGRTIDPAYE--------------IHLALYQAITGPEEDQKAFKQVAPDFFDLIVID 293 Query: 575 EAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQIF 629 E HRG + SA+R ILD+F A +I LTATP + + F Sbjct: 294 ECHRGSASED----------------SAWREILDYFSSATQIGLTATPKETHEVSSTDYF 337 Query: 630 GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ---EGVYLSKGEQVERISPQGEVINDT 686 G+PVY Y+ + + DGFL P +++ + +G +KG+ GEVI Sbjct: 338 GDPVYVYSLKEGIEDGFL----APYKVVRVDIDVDLQGWRPTKGQ----TDLNGEVI--- 386 Query: 687 LEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELR 745 DD+ + DF+R +VI V +T+YL T KT+VFC HA E +R Sbjct: 387 --DDRIYNQKDFDRTMVIDERTELVARTITDYLKRTNPMDKTIVFCNDIDHA----ERMR 440 Query: 746 AAFKKKYPQL---EHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDI 802 A P+ ++KITGD + ++ I K+ P I T +L+TTGVD Sbjct: 441 RALVNLNPEQVKKNDKYVMKITGDDEIGKAQLDNFIN--PKKPYPVIATTSELMTTGVDA 498 Query: 803 PSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD---CVDIYS-------TLE 852 + +V + ++S ++Q+ GR TR+ K F I D ++++ + Sbjct: 499 KTCKLVVLDQNIQSMTKFKQIIGRGTRIDERYGKLWFTILDFKKATELFADERFDGIPEK 558 Query: 853 SVDTMRPVVVRPKVELQTLVNEITDSETYKITEAD 887 +DT + P+ + + + EI++ + ++T D Sbjct: 559 VMDTTPEDIADPESDFEEKLEEISEHDEEQVTGVD 593 >UniRef50_B5FA21 Type I restriction-modification system, R subunit n=8 Tax=Bacteria RepID=B5FA21_VIBFM Length = 816 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 152/527 (28%), Positives = 235/527 (44%), Gaps = 94/527 (17%) Query: 370 QRFKIPFCYSTNGRE-YRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL--LEMLGSE 426 +R F Y+TNG E Y+ TK K + + PEE+ L E Sbjct: 88 KRLNCRFGYATNGHEIYQIDTVTKE-------------EKLVERFLSPEEMWALTFEKKE 134 Query: 427 PQKQNQW---FADNPGMSELGL---RYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 Q W F P ++ G RYYQE+A+ A A+ KG +ILL +ATGTGKT Sbjct: 135 TQYSQVWRERFTAVPMETQSGTWLPRYYQENAINAALDAVAKGAPKILLTLATGTGKTSI 194 Query: 481 AIAMMFRLIQSQ-------------RFKRILFLVDRRSLGEQALGAFED------TRING 521 A + ++L S+ R RILFL DR L QA F RI+ Sbjct: 195 AFQIAWKLFNSKWSVKAQKKPELAKRRPRILFLADRNILANQAFNDFSPFGDDAIIRISP 254 Query: 522 DTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV--KRTLQSDEPMPVAR----YDCIVVDE 575 D P++ + + Q+ + K + +D P + +D I++DE Sbjct: 255 DEVRK-------NGGVPKNGS-VFFTIFQTFMSGKDSEGNDAPYFGSYSPDFFDFIIIDE 306 Query: 576 AHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA----LHTVQIFG 630 HRG D+ S++R IL++F AV++ LTATP +T + FG Sbjct: 307 CHRGGAHDE----------------SSWRGILEYFSSAVQLGLTATPKRLDNANTYKYFG 350 Query: 631 EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDD 690 +PVY Y ++ + DGFL P ++ T + ++ + G V+ +E Sbjct: 351 KPVYSYDLKSGINDGFLT----PFKVYT-------IVGTLDKYTYLPGDGVVVRGKVEPG 399 Query: 691 QDFEVADFN--RGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAF 748 + +E DFN RG+ IPA + + ++P ++KT+VFC+T HA V + + Sbjct: 400 RVYEEKDFNHNRGISIPAREEKRVHYWMDRINP--NEKTIVFCMTQEHAGEVRDLINQYA 457 Query: 749 KKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNI 808 +KK + ++IT D K + + N++ +P IV T L+TGVD ++ NI Sbjct: 458 QKKGGSDNLNYCVRITADDGKSGEADLELFSD-NEKTIPTIVTTSRKLSTGVDARNVRNI 516 Query: 809 VFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD 855 V +R I ++Q+ GR TRL + K F +FD V + D Sbjct: 517 VLMRPCTDMIEFKQIIGRGTRLYDK--KDFFSVFDFVQAHHNFSDPD 561 >UniRef50_B1VEN8 Type I restriction-modification system, restriction subunit n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VEN8_CORU7 Length = 1226 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 232/921 (25%), Positives = 375/921 (40%), Gaps = 190/921 (20%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQHD 64 SNF F+ V AE N +P T+ R E +H+ N+ + Sbjct: 9 SNFGFVAQVWPALLNDCVQAERNALTNPITSCFYARRVLEKVVRHIWEFRNLGFAADTSI 68 Query: 65 LLRELGK--IAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 R + V L H LR N AVH+ +D + +L R+ + ++ Sbjct: 69 FGRMQDERFTTIVPQAQLDKLHFLRINCNNAVHD-----SDVPITPQLAVRVVTHLFDVL 123 Query: 123 T----KDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQT-QAEVEAQQQKLVA 177 T + P P ++Q+ L Q R + Q A+++A+ ++L Sbjct: 124 TWATARHSTNPQAQPRAP------FNQQALKNHHPATQMGRAQLQKLNAQLQAKDEELS- 176 Query: 178 LNGYIAILEGKQQ-----ETEAQTQARLAALEAQL----------------------AEK 210 N + + E +Q E A+ +AR A +A++ AE+ Sbjct: 177 -NTALLLSEAEQARLEEAEKHAEERARFATRQAKVEEEHAETEAELAAAKEELARLAAER 235 Query: 211 NAELAKQTEQERKAYHKEI-TDQAIKRTLNLSEEESRF-LIDAQLRKAGWQADSKTLRFS 268 +AE+ + + R KE A ++SE E+R LID L AG+ K L Sbjct: 236 DAEIERLRAELRDELAKEAGAGTAPALPPSISEAETRKDLIDPMLAAAGF-VQGKNLT-- 292 Query: 269 KGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNES 327 + + P G + G+ADYVL+ KP+AVVEAKR + + ++ Sbjct: 293 --------IEHPVQGMPVGAESPRGNGYADYVLWDDDGKPLAVVEAKRASGSLSEGAVQA 344 Query: 328 YRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRA 387 Y+ C LEH + + P + TNG + Sbjct: 345 RLYADC----------LEH-----------------------KHGQRPIIFCTNGHQISM 371 Query: 388 ----TMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQ--NQWFADNPGMS 441 T SG Y ++A+ + +L M+ ++ +Q D Sbjct: 372 VDDQTNLPGSGAGY--------TARAVEGYPDAAQLRRMINRRHTRKPLSQVVVD----P 419 Query: 442 ELGLRYYQEDAVRAVEKAI-VKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFL 500 ++ R YQ++ +R V +A + ++ LL MATGTGKTR AIA L Q+ ++LFL Sbjct: 420 DIAGRDYQQEMIRRVTEAFESQLKRRALLVMATGTGKTRVAIATAKLLRQANWVGKVLFL 479 Query: 501 VDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD 560 DR +L +QA F D + N + + PE + ++V+T Q+++ + D Sbjct: 480 ADRTALVDQAHDNFVDLYPDSAPVNLL--------REPEGTGGVYVSTYQTMMG-LIDDD 530 Query: 561 EPMPVA----RYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIA 616 P A +D I++DEAHR ++RILD+FDA + Sbjct: 531 GEHPAAFRPFDFDLIIIDEAHRSIY-------------------HRFKRILDYFDAYVLG 571 Query: 617 LTATP----ALHTVQIFG----EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLS 668 LTATP +T Q+F P YT A+ D +L+ P Q++ AQ+ ++L Sbjct: 572 LTATPRAEVTHNTYQLFDIEDKTPTGSYTLEQAIEDKYLV----PPQVL---AQDSLFLR 624 Query: 669 KGEQVERISPQGEVINDTLE--DDQDFEVADFNRGLVIPA-----FNRAVCNELTNYLDP 721 G + E + + +++ D E D+D D G+ +NR + L Sbjct: 625 SGVRYEDLDEEEQLLWDAAEWGTDEDGNPLDPPDGVTAAEINSRLYNRDTIRGVLRTLVE 684 Query: 722 TGSQ--------KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARK 773 G + KT++F T HA+++ EEL F PQ + IT R Sbjct: 685 QGIKVEGGDRLGKTIIFARTQRHAELINEELGRCF----PQQAGERAAVIT----HSTRY 736 Query: 774 VQTMITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL-- 830 + RF N +I ++VD+L TGVD+P + N+VF + V S + QM GR TRL Sbjct: 737 AAEELKRFKNPAGTLDIAISVDMLDTGVDVPEVVNLVFFKPVYSATKFWQMMGRGTRLRR 796 Query: 831 ---CPEVNKTSFKIFD-CVDI 847 ++K F++FD C ++ Sbjct: 797 DLFGENLHKDKFRVFDFCGNV 817 >UniRef50_C4ZF20 Type I restriction-modification system R subunit (Endonuclease) n=22 Tax=Firmicutes RepID=C4ZF20_EUBR3 Length = 1116 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 202/824 (24%), Positives = 342/824 (41%), Gaps = 183/824 (22%) Query: 54 LNIPPCENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGF 112 L++P +N L+ E ++ + + +GN AVH +N ++A + LR F Sbjct: 57 LSLPYRDNVSSLIHEPTFRRIIEPRLFPMLKYTIHLGNVAVHTNNNIGRDEAIIALRDLF 116 Query: 113 RLAVWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQ 172 W +++YD E Y + +L + + E + + ++ Sbjct: 117 EFCDWIDYSYSREYD------------EKTYDESILASGNEKRIKADELMKLYEGLSSKD 164 Query: 173 QKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQ 232 +KL E +E E L Q+A+K ++ K E +H + Sbjct: 165 KKL----------ESVLKENEE--------LREQMAKKRSQNVKTRE-----FHVD---- 197 Query: 233 AIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETG 292 T++ +E R+ ID L++AGW G N E TG + Sbjct: 198 ----TISEAETRKRY-IDVALKEAGWVI---------------GRNVTEEEPVTGMPNST 237 Query: 293 NQGFADYVLFVGLK-PIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDE 351 G+ DYVL+ P+AVVEAK+ ++D ++ Y+ C N + R Sbjct: 238 GTGYVDYVLWGKDNLPLAVVEAKKASVDAMVGSQQAKLYADCLQNKYNRR---------- 287 Query: 352 VHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALP 411 P + TNG E+ T G R+V Sbjct: 288 -----------------------PLIFITNGFEFFYT-NDYMGYPRREVSG--------- 314 Query: 412 EWHRPEEL-LEMLG--SEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEIL 468 + EEL LEM G S +N +D ++ R YQ++AV AV AI +++L Sbjct: 315 -FFTQEELQLEMDGRTSRIPLENIRISD-----DITNRPYQKEAVTAVCDAITNKHRKML 368 Query: 469 LAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIF 528 + ATG+GKTR +I+++ L + K ILFL DR++L +QA + + + N Sbjct: 369 IVQATGSGKTRVSISIVDVLRRHNYVKNILFLADRKALVKQAKNNYTNLLPDLSCCNL-- 426 Query: 529 DIKGLTDKFPEDSTKIHVATVQSLV-----KRTLQSDEPMPVARYDCIVVDEAHRGYILD 583 L +K +S ++ +T +++ ++ ++ + I+ DE HR Sbjct: 427 ----LDNKDDPESCRMIFSTYPTMMNAIDERKNKYGEKLFSPGHFQLIICDEVHRSI--- 479 Query: 584 KEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYR 635 Y+ I ++FDA+ + +TATP +T +F G P + Sbjct: 480 ----------------YKKYQEIFEYFDAMLLGMTATPKNEIDKNTYGVFDLERGVPTFA 523 Query: 636 YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEV 695 Y AV +G+L++ ++ ++ + G++ + E+ E DT DD V Sbjct: 524 YELEKAVEEGYLVNY-STLEYKSKIMESGIHYDELSDEEK-----EEYEDTFSDDD--TV 575 Query: 696 ADFNRGLVIPA--FNRAVCNELTNYLDPTGSQ--------KTLVFCVTNAHADMVVEELR 745 D G + FN +++ L G + KT++F + HA +V+ Sbjct: 576 GDDISGEAVNTWLFNADTIDKVLRELMEKGLKIEGGDKLGKTIIFAKNSLHAQAIVKR-- 633 Query: 746 AAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPS 804 F K +P+ D I +I D + ++I F+ +++P I V+VD+L TG+DIP Sbjct: 634 --FNKLFPEYGGDFIKRI----DYSIKYSDSLIDEFSTSDKMPQIAVSVDMLDTGIDIPE 687 Query: 805 ICNIVFLRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFD 843 I N+VF +KV+S + QM GR TRLCP + +K F IFD Sbjct: 688 ILNLVFFKKVKSYAKFWQMIGRGTRLCPNLLGEGMDKERFLIFD 731 >UniRef50_B0JHV9 Type III restriction enzyme res subunit n=4 Tax=Chroococcales RepID=B0JHV9_MICAN Length = 1148 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 238/936 (25%), Positives = 385/936 (41%), Gaps = 204/936 (21%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQHD 64 SNF FL+ Y A AE +P + R E L N P + D Sbjct: 3 SNFSFLRDQFPTIYDHASQAEGLVFSNPRASCFYTRFVLEQMV--CWLYENDPYLQPPRD 60 Query: 65 LLRELGKI----AFVDDNILSVFHKLR---RIGNQAVHEYHN-DLNDAQMCLRLGFRLAV 116 LG + F D+ +F K+R ++GN A H+ D+ + F L Sbjct: 61 --NSLGALIHEQTFKDNLKPGLFGKIRTIHKVGNNAAHDTSPISERDSLHLIEELFHLTY 118 Query: 117 WYYRLVTKDYDFPVPVFVLPERGENLY-HQEVLTLKQQLEQQVREKAQTQAEVEAQQQKL 175 W R ++ E G+ + Q++ +Q+++ + ++ +A +Q Sbjct: 119 WLVRYYGQNGR---------ELGDIRFDRQKIPPAAPPAPKQLQDLEKRLSQSDALRQ-- 167 Query: 176 VALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIK 235 + E KQ++TEA+ A A +A LA+ +QAI Sbjct: 168 --------LAEAKQRQTEAELAAARAERDALLAQ---------------------NQAIA 198 Query: 236 RTLNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGN- 293 + +E ++R +LID L++AGW D+K P + W + G+ Sbjct: 199 DRHDYNEADTRRYLIDVLLQEAGW--DTKA----------PNATE-FEVWGMPIQQAGDT 245 Query: 294 -QGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDE 351 +GF DYVL+ KP+A+VEAKR++ + N++ Y+ C + + Sbjct: 246 GRGFVDYVLWGDDGKPLALVEAKRSSKSPDSGQNQAKLYADCLEKDY------------- 292 Query: 352 VHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALP 411 QR P + +NG E + +W D + + Sbjct: 293 -----------------NQR---PVIFYSNGYE--------TYLW----DDLTYPPRPVL 320 Query: 412 EWHRPEELLEMLGSEPQKQNQWFADNPGMSE-LGLRYYQEDAVRAVEKAIV-KGQQEILL 469 + R EL ++ ++ N ++E + R YQ++A+R + + K ++ LL Sbjct: 321 GFLRKTELERLIFRRSHRKR---LSNTAINEDIVGRPYQKEAIRRITETFEEKCARKSLL 377 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 MATGTGKTRTAIA++ L + R+LFL DR +L +QA AF+ + T + Sbjct: 378 VMATGTGKTRTAIALVELLKSANWVNRVLFLADRNALLKQAYRAFQ-RHLPSVTVLHLTR 436 Query: 530 IKGLTDKFPEDSTKIHVATVQSL---VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQ 586 K +T + +T Q++ + R V +D ++VDEAHR Sbjct: 437 SKDVT------GANVLFSTYQTMLNAIDRMDAEGRIFGVGYFDLVIVDEAHRS------- 483 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH----TVQIF----GEPVYRYTY 638 Y I D+FDA+ + LTATP T +IF G P + Y Sbjct: 484 ------------IYQKYGEIFDYFDALLVGLTATPRSEIDRDTYRIFQLPQGVPTFAYEL 531 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADF 698 AV DG L+ PP + +L G + ++PQ + D E +D E + Sbjct: 532 NDAVRDGHLV---PPKGVTVPFK----FLRTGVKYSELTPQERL--DYEEKFRDEESGEL 582 Query: 699 NRGLVIPAFNRAVCN--------EL-------TNYLDPTGSQKTLVFCVTNAHADMVVEE 743 + + AFN + N EL N D G KT++F + HA + + Sbjct: 583 PQAINAAAFNDWLFNIDTVDQALELLMQRGLKVNSGDRLG--KTIIFARNHRHAQCICDR 640 Query: 744 LRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIP 803 F YP + KI D A+ + + NKE P + V+VD+L TGVD+P Sbjct: 641 ----FNSNYPHYK-GHFAKIIDSHDNYAQSLLDDFSEANKE--PILAVSVDMLDTGVDVP 693 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFDCV--------DIYST 850 + N+VF + V SR+ + QM GR TRLC ++ +KT F +FD DI T Sbjct: 694 EVVNLVFFKPVFSRVKFNQMIGRGTRLCQDLFGTGNHKTEFLVFDLCGNFEYFEQDIDET 753 Query: 851 LESV-DTMRPVVVRPKVELQTLVNEITDSETYKITE 885 + + +++ +V+ ++EL T + S T + E Sbjct: 754 SQKIPESLTSRLVKHRLELATRLAPSKPSATPRARE 789 >UniRef50_UPI000196AC3A hypothetical protein CATMIT_00264 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AC3A Length = 1116 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 251/986 (25%), Positives = 406/986 (41%), Gaps = 213/986 (21%) Query: 6 NFEFLKGVNDFT-YAIACA-AENNYPDDPNTTLIKMRMFGEATAKHL---GLLLNIPPCE 60 NF FLK +F +A C AE P I R E ++ + L +P + Sbjct: 5 NFTFLKNKTEFQDFASTCIEAEKGLMVSPANCAILTRRALEQAVHYMYKNDIDLQMPYRD 64 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVWYY 119 N L+ E + I + +GN AVH +A + L +RL W Sbjct: 65 NLSALVNEYTFKQIIPTEIYEGIRYVITLGNFAVHTSRKVKREEAVLALNNLYRLVNWMN 124 Query: 120 RLVTKDYDFPVPVF---VLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLV 176 DY +P F LP+ Q + + + L++QVR+ Q E E +Q++ + Sbjct: 125 YSYGIDYQEQLPEFDPTKLPD-------QTHMFVNKDLKEQVRDILNKQKEKEEKQKEEL 177 Query: 177 ALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR 236 A +L +N EL KQ +RK D+A++ Sbjct: 178 A----------------------------RLVAENEELRKQGAAKRKE------DKAVEY 203 Query: 237 T-LN-LSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGN 293 +N + E +R L ID L++AGW D+ E+P T + Sbjct: 204 VDVNKIPEWRTRKLYIDLMLKEAGWDFDTNVEE----------------EYPVHHMPTES 247 Query: 294 Q-GFADYVLFVGL-KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGF-LRETLLEHYSPD 350 Q GF DY+L K IAV+EAK+ ++D N++ Y+ C + + LR + Sbjct: 248 QDGFVDYILRGKTGKIIAVIEAKKTSVDPRVGRNQAKLYADCIEQEYGLRPVIF------ 301 Query: 351 EVHEAVPEYET-SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKA 409 +ET W D R KI +S + +T+ I RD R R++SK Sbjct: 302 ----YTNGFETFIWDDMMYPDR-KISSIFSQD--------ETQLLIDRRDTR--RSISKP 346 Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILL 469 + + + RYYQ++A+ + KG ++ LL Sbjct: 347 VIQ----------------------------DAITNRYYQKEAIVRTCEDFEKGSRKALL 378 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 MATG+GKTR AI+++ L ++ K ILFL DR +L QA F + + T N Sbjct: 379 VMATGSGKTRVAISLVDVLTKADWAKNILFLADRTALVNQAKKNFVNLLPSLTTCNL--- 435 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVK-----RTLQSDEPMPVARYDCIVVDEAHRGYILDK 584 +K + +++ +T +++ R+ + +D I++DE+HR Sbjct: 436 ---CENKEDPEVSRMIFSTYPTMMNAIDETRSKDGNRLFTPGHFDLIILDESHRS----- 487 Query: 585 EQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRY 636 + Y+ I D+FDA+ I LTATP +T IF G P Y Y Sbjct: 488 --------------VYNKYKDIFDYFDALLIGLTATPKDSIGANTYSIFDLETGVPTYAY 533 Query: 637 TYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVA 696 Y TAV D +L+ + + +EG+Y + E+ + D+ + Sbjct: 534 EYETAVKDKYLVSYH-SYETKMKFLEEGIYYDDLSEEEKKEFEEH-----FPDEDKITSS 587 Query: 697 DFNRGLV-IPAFNRAVCNELTNYLDPTGSQ---KTLVFCVTNAHADMVVEELRAAFKKKY 752 D N+ + I + + + + + + G K+++F HA+ + E F Y Sbjct: 588 DMNKFVFNINTIDTVIRDLMEHGIKIEGGDKIGKSIIFAANQNHANKIKER----FDILY 643 Query: 753 PQLEHDAIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFL 811 P+ + KI + + VQ I RF+K + P I ++VD+L TG+D+P I N+VF Sbjct: 644 PEYKG----KIAEVITFNTKFVQNAIDRFSKTDSYPQIAISVDMLDTGIDVPDIVNLVFF 699 Query: 812 RKVRSRILYEQMKGRATRL-----CPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKV 866 +KVRS+ + QM GR TRL P +K F IFD L ++D R V RP+ Sbjct: 700 KKVRSKAKFWQMIGRGTRLRKDLFGPGDDKKGFLIFDY------LGNMDYFR-VDQRPE- 751 Query: 867 ELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRR 926 ++ + E YK+ R ++ EQ + N+D + I+KQ++ Sbjct: 752 --KSGIIESLSQRIYKL-----RVDILYALEQNAS-----------NQDYVDEINKQIKE 793 Query: 927 LDELCQDAAGVNFNGFASRLREKGPH 952 + Q G+N + F +L K H Sbjct: 794 MSGYIQ---GLNEDSFNVKLHLKYVH 816 >UniRef50_A5GB17 Type III restriction enzyme, res subunit n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GB17_GEOUR Length = 753 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 178/649 (27%), Positives = 266/649 (40%), Gaps = 146/649 (22%) Query: 240 LSEEESRFLIDAQLRKAGWQADSKT-------LRFSKGARPEPGVNKAIAEWPTGKDETG 292 ++E +R LID LR+ GW K+ + S G P P G+D G Sbjct: 1 MNETYARILIDDMLRQVGWDPRDKSEVGTEVPVYLSAGHDPAPDY--------AGRDSFG 52 Query: 293 N-----QGFADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEH 346 G ADYVL+ +P+AVVEAK+N Sbjct: 53 EPSYHVAGRADYVLYGQNGRPLAVVEAKKN------------------------------ 82 Query: 347 YSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRD-VRDTRN 405 A+ Y Q QR PF + TNG I++ D + D Sbjct: 83 --------AINPYVAKQQALPYAQRIDAPFIFLTNGEL----------IYFWDYLNDDAR 124 Query: 406 MSKALPEWHRPEELLEMLGSEPQKQN---QWFADNPGMSELGLRYYQEDAVRAVEKAIVK 462 + + E L+EM S Q + G + +R YQ++A+RA++ A+ Sbjct: 125 IVDSFYSRRDMERLVEMRQSRKTLATIELQDYYVRQGETRQ-VRDYQQEAMRALDHAVEL 183 Query: 463 GQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD 522 G++ L+ + TGTGKT + RL+++ +R+LFLVDR L +QAL +D I G+ Sbjct: 184 GKKRFLIELPTGTGKTDLIGLYLKRLMKAGWAERVLFLVDREQLAKQALETIQD--ILGE 241 Query: 523 TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYIL 582 ++S + G + +I VA +Q+++ E +D +V DE+HR Sbjct: 242 -YSSYWLKPGTVRQ----EKQITVALLQTMIG----CHEDYSSGYFDVVVTDESHRSI-- 290 Query: 583 DKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAV 642 A++ L FDA+ I LTATPA Y R Sbjct: 291 -----------------YGAWQTALTRFDALHIGLTATPA------------NYIERNTF 321 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSK---GEQVERISPQGEVINDTLEDDQDFEVADFN 699 D P ++A G YL+ + I +G +ND D FE N Sbjct: 322 DFYQCKDNQPDFSYRIQDAFAGGYLAPYRFATGITEIIAEGADLNDEHYDPSQFERTWTN 381 Query: 700 RG---LVIPAFNRAVCNELTNYLD-----PTGSQKTLVFCVTNAHADMV---VEELRAAF 748 L++ F+R NY D G K++VF ++ HA + + +L Sbjct: 382 EKTNKLMMEEFDRLAWE---NYKDLAPGQKDGPGKSVVFAISKHHAARLTHYLNQLHPEH 438 Query: 749 KKKYPQLEHDAIIKITGD-ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICN 807 K +Y ++ IT D AD DA +I RF KE P + V+V +L TG D + + Sbjct: 439 KGRYAEV-------ITSDVADADA-----LIRRFKKEIYPMVAVSVGMLDTGFDCRELLH 486 Query: 808 IVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT 856 +V R+VRS ILY+QM+GR TR P + K F I+D + DT Sbjct: 487 VVMCRRVRSPILYQQMRGRGTRTAPHIQKKKFVIYDFFKNHEYFNDSDT 535 >UniRef50_Q47281 Type I restriction enzyme EcoEI R protein n=45 Tax=Bacteria RepID=T1RE_ECOLX Length = 813 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 146/489 (29%), Positives = 226/489 (46%), Gaps = 70/489 (14%) Query: 374 IPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSK--ALPEWHRPEELLEMLGSE----- 426 +PF +++NG G + D + + + AL ++ PE+L + + Sbjct: 100 VPFVFASNG----------DGFIFHDKTNPQQLESEIALSDFPTPEQLWQKYCAWKGFTQ 149 Query: 427 ---PQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIA 483 P +F D G + RYYQ A+ A+ G+ ILL MATGTGKT TA Sbjct: 150 EQLPVISQDYFDDGSGKAP---RYYQMQAINRTVDAVSAGKNRILLVMATGTGKTYTAFQ 206 Query: 484 MMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTF-NSIFDIKGLTDKFPEDST 542 +++RL +++ KRILFL DR L +Q R + F N++ + G T + + Sbjct: 207 IIWRLWKAKNKKRILFLADRNILVDQT------KRNDFQPFGNAMTKVTGRT---IDPAY 257 Query: 543 KIHVATVQSLVKRTLQSDEPMPVAR--YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 ++H+A Q++ VA +D IV+DE HRG + Sbjct: 258 EVHLALYQAITGPEEHQKAYKQVAPDFFDLIVIDECHRGSASED---------------- 301 Query: 601 SAYRRILDHF-DAVKIALTATPA----LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 SA+R IL++F A ++ LTATP + + FGEPVY Y+ + + DGFL Sbjct: 302 SAWREILEYFGSATQVGLTATPKETEDVSNIDYFGEPVYTYSLKEGIEDGFLAPYKVVRV 361 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNEL 715 I + Q G KG+ + GE I D + + + DF+R LVI V + Sbjct: 362 DIDVDVQ-GWRPVKGQ----LDKYGEEIEDRI-----YNLKDFDRTLVIDERTMLVAQTI 411 Query: 716 TNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV 774 T+YL T KT+VFC HAD + L ++ + E ++KITGD D ++ Sbjct: 412 TDYLKRTNPMDKTIVFCNDIDHADRMRHALVVLNPEQVLKNEK-YVMKITGDDDIGKAQL 470 Query: 775 QTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV 834 I K+ P I T +L+TTGVD + +V + ++S ++Q+ GR TR+ + Sbjct: 471 DNFIN--PKKAYPVIATTSELMTTGVDAQTCKLVVLDQNIQSMTKFKQIIGRGTRINEKH 528 Query: 835 NKTSFKIFD 843 K F I D Sbjct: 529 GKLWFTILD 537 >UniRef50_A5TW30 Type I site-specific deoxyribonuclease restriction subunit n=6 Tax=Bacteria RepID=A5TW30_FUSNP Length = 1127 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 178/649 (27%), Positives = 284/649 (43%), Gaps = 137/649 (21%) Query: 239 NLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTG--KDETGNQG 295 N SEE++R ID L KAGW D K I E+ K T +G Sbjct: 193 NFSEEDTRKLFIDTFLVKAGWNLDDKN----------------IFEYEVEGIKSTTSGKG 236 Query: 296 FADYVLF--VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 DYVL+ G+ P+A++EAK+ ++ ++ Y++ + F Sbjct: 237 KIDYVLWGDNGI-PLAIIEAKKAELNAKKGEFQALEYAEALEKKF--------------- 280 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEW 413 F P + TNG E I+ + +++ + + + + Sbjct: 281 -----------------NF-FPIRFVTNGFE----------IFIYENKNS--IPRRVYGF 310 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMS-ELGLRYYQEDAVRAVEKAIVKGQQEILLAMA 472 +R EELL+++ +K A++ ++ E+ RYYQE AV+ + + G ++ LL MA Sbjct: 311 YRKEELLKIIARRNEK---IVANDISINKEIIDRYYQERAVKKAIENYISGNRKSLLVMA 367 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKG 532 TG+GKTR AI+++ L + KR LFL DR +L +QAL F+ + + + + Sbjct: 368 TGSGKTRVAISIVDCLSRLNMVKRTLFLADRVALVKQALNNFKKSLPD-------YTLVD 420 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTLQSDE----PMPVARYDCIVVDEAHRGYILDKEQTE 588 L + D+ KI +T Q+++ + ++ E V +D I+VDEAHR Sbjct: 421 LVSEKDRDNAKIVFSTYQTMMAESEKTREDGTDKYGVGAFDLIIVDEAHRS--------- 471 Query: 589 GELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFG----EPVYRYTYRT 640 Y + ++FD++ + LTATP +T ++F EP Y Sbjct: 472 ----------IYQKYGDLFEYFDSLILGLTATPKDEIDRNTFKVFDMNSKEPTDSYDLFE 521 Query: 641 AVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNR 700 A D +L+ P I+ T N E + E + ++ ED E++ Sbjct: 522 AAKDKYLL--LPKIKEGTLNYPENGIVYSKLSEEEKEKYESLFDE--EDSMPEEIS--GD 575 Query: 701 GLVIPAFNRAVCNELTNYLDPTGSQ--------KTLVFCVTNAHADMVVEELRAAFKKKY 752 L FN +++ L G + KT++F + HAD +VE F K Y Sbjct: 576 SLNSWFFNDGTTSKVLTTLMEEGYKIESGDKLGKTIIFAKNDRHADHIVE----IFNKLY 631 Query: 753 PQLEHDAIIKITGDADKDARKVQTMITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVFL 811 L + KIT + KVQ +I RF N P I V+VD+L TG+DIP I N+VF Sbjct: 632 KNLGGEFCQKITTKVE----KVQALIDRFVNPNSFPQIAVSVDMLDTGIDIPEILNLVFY 687 Query: 812 RKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFDCVDIYSTLESVD 855 +KV+S+ + QM GR TR ++ +K F I D +S E D Sbjct: 688 KKVKSKAKFWQMIGRGTRKYKDIYGIGKDKEDFLILDFCRNFSYFEMKD 736 >UniRef50_C2CJE8 Type I site-specific deoxyribonuclease n=5 Tax=Firmicutes RepID=C2CJE8_9FIRM Length = 781 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 168/594 (28%), Positives = 256/594 (43%), Gaps = 120/594 (20%) Query: 297 ADYVLFVGLK-PIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADYVL++ PIA+VEAK N + L ++ Y++ D Sbjct: 59 ADYVLYLNNNNPIAIVEAKDNKKSLSHGLQQAMTYARMLD-------------------- 98 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 +PF YS+NG G D + +L E+ Sbjct: 99 ------------------LPFAYSSNG----------DGFMEHDFLTGKERELSLEEFPS 130 Query: 416 PEELLEMLGSEPQK------QNQWFADNPGMSELGL---RYYQEDAVRAVEKAIVKGQQE 466 EEL+ SE K + + + P S RYYQ A+ + + I KG+ Sbjct: 131 EEELINRFKSEKNKGRGLSEEEEKIINQPYYSSQNTYPPRYYQRIAINRILEEIAKGKDR 190 Query: 467 ILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNS 526 +LL MATGTGKT TA +++RL+QS + K+IL+L R L +Q I+GD F Sbjct: 191 LLLVMATGTGKTYTAFQIVYRLLQSGQKKKILYLAYRNILVDQT--------ISGD-FAP 241 Query: 527 IFDIKGLTDKFPEDSTKIHVATVQ-SLVKRTLQSDEPMPVAR------YDCIVVDEAHRG 579 + + + +D T I V SL ++ + D + +D I+VDE HRG Sbjct: 242 LKKVIHKVNFSKDDPTTITSHQVYFSLYQQLIGEDGKEHFSELFRPDFFDLIIVDECHRG 301 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQIFGEPVY 634 KE S++RRIL++F A +I +TATP + FGEP+Y Sbjct: 302 SA--KED--------------SSWRRILEYFKSASQIGMTATPKETKYVSNSHYFGEPIY 345 Query: 635 RYTYRTAVIDGFLIDQDPPIQI--ITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQD 692 Y+ R + DGFL P ++ IT + E KG+ + G+ I D + ++ D Sbjct: 346 SYSLREGIEDGFL----APFKVINITTDIGESWRPYKGQ----LDKSGKEIEDRIYNNSD 397 Query: 693 FEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHAD---MVVEELRAAF 748 + D+N +VI V E+T YL T KT+VF T A+ + + L Sbjct: 398 Y---DYN--IVIEDRTYQVAKEITAYLKATDRMAKTIVFTPTEEAAERMRVALVNLNNDL 452 Query: 749 KKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNI 808 K+ P D ++ITG + K+ I+ + P I T LL+TGVD + I Sbjct: 453 VKENP----DYCVRITGSDEYGKSKLDYFISI--SSQYPVIATTSKLLSTGVDTKMVKLI 506 Query: 809 VFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVV 862 V + S ++Q+ GR TRL + KT F + D ++ D P+++ Sbjct: 507 VLDTMLNSMTEFKQIIGRGTRLREKEGKTHFVLMDFRNVSRLFADPDWDGPLII 560 >UniRef50_C9RRX7 Type I site-specific deoxyribonuclease n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRX7_FIBSS Length = 781 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 174/616 (28%), Positives = 270/616 (43%), Gaps = 117/616 (18%) Query: 249 IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPI 308 ID +L++A W+ + +++ + E IA G E + +++ G+K I Sbjct: 11 IDPKLKEALWEVTPDSAIYTEQSAYE------IAPGRIGHAERNPKKIDYLLVYKGIK-I 63 Query: 309 AVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSG 368 A+VEAK++ +DV E VP Q Sbjct: 64 AIVEAKKDELDV--------------------------------SEGVP------QAKEY 85 Query: 369 KQRFKIPFCYSTNGREYRATMKTKSGIWYRDVR-DTRNMSKALPEWHRPEELLEMLGSEP 427 +R I F YS NG + IW D++ A P P+EL E L E Sbjct: 86 AERMNIRFTYSCNGDK----------IWAIDMQTGEEGFVDAFPT---PQELWERLYPEN 132 Query: 428 QKQNQWFADNPGMSELG--LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMM 485 P + G RYYQE AV V AI + Q +LL +ATGTGKT A + Sbjct: 133 NPLRDKLNAVPFNRDGGKSPRYYQEIAVNNVMDAISRKQDRVLLTLATGTGKTYIAFQIC 192 Query: 486 FRLIQ-------SQRFKRILFLVDRRSLGEQAL---GAFEDTRINGDTFNSIFDIKGLTD 535 +++ + ++R RILFL DR L QAL G F++ + T SI KG+ Sbjct: 193 WKIFKAHWNVDGTERLPRILFLADRNILSNQALNDFGQFDENAMCRITPESIAKSKGVP- 251 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 K P I + SL + + E P +D +++DE HRG D+ Sbjct: 252 KGPSIYFSIFQTMMTSLNGKFVY--ENYPEDFFDLVIIDECHRGAANDE----------- 298 Query: 596 QLDYVSAYRRILDHFD-AVKIALTATPA----LHTVQIFGEPVYRYTYRTAVIDGFLIDQ 650 S +R ILD+F A + LTATP +T + FG+PVY Y+ + + DGFL Sbjct: 299 -----SRWRDILDYFQRAYHLGLTATPKKNENANTYEYFGKPVYVYSLKQGIEDGFLTPY 353 Query: 651 DPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV-IPAFNR 709 ++I + N +Y P+ +V + ++ ++ + DF G + I + Sbjct: 354 R--VRISSSNIDNYIY----------DPEDDVESGEIDPNKIYTETDFYHGNIKIRERDE 401 Query: 710 AVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADK 769 E +DP +KT+VF T AHA ++ + + +K P + + + + D DK Sbjct: 402 FRVEEFLKQIDP--DEKTIVFGATQAHAAILRDLINQHSRK--PNVNYCKRV-TSDDGDK 456 Query: 770 DARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 ++T + N++ LP I+ T L+TGVD ++ NIV +R V + I ++Q+ GR TR Sbjct: 457 GEADLKTF--QDNEKLLPTILTTSQKLSTGVDAKNVRNIVLMRPVNNIIEFKQIIGRGTR 514 Query: 830 LCPEVNKTSFKIFDCV 845 L K F I+D V Sbjct: 515 LFD--GKYFFTIYDFV 528 >UniRef50_C2CT05 Type I site-specific deoxyribonuclease n=3 Tax=Corynebacterium RepID=C2CT05_CORST Length = 1212 Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 176/653 (26%), Positives = 273/653 (41%), Gaps = 145/653 (22%) Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 L + E E+R LID L AG+ DS T P P G+ Sbjct: 272 LAIGEAETRRQLIDPMLEVAGFSGDSVTRELELHGMPNPS----------------GVGY 315 Query: 297 ADYVLFVGLK-PIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADYVL+ + P+AV+EAK++ + ++ Y+ C + Sbjct: 316 ADYVLWDDDRTPLAVIEAKKSMESMSVGSHQVKLYADCIER------------------- 356 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYR----ATMKTKSGIWYRDVRDTRNMSKALP 411 EY T P TNG A +G+ Y R+ A Sbjct: 357 --EYGTR------------PVMLCTNGYHIDLIDDAANLPGTGVGY-PAREVEGFPTA-- 399 Query: 412 EWHRPEELLEMLGSEPQKQNQWFADNPGMSEL---GLRYYQEDAVRAVEKAI-VKGQQEI 467 ++L M+G + ++ P +E+ G R YQ +A+RAV + + + +++ Sbjct: 400 -----QQLRRMIGRRTMRA--LLSETPVDTEIAGGGARTYQLEAIRAVTETLEARRRRQA 452 Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSI 527 LL MATGTGKTR A+A L Q+ ++LFL DR +L QA AF N I Sbjct: 453 LLVMATGTGKTRVAVATARLLRQAGWVGKVLFLADRTALVNQAHKAFVSMYAESTPVNLI 512 Query: 528 FDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVA----RYDCIVVDEAHRGYILD 583 K PE ++V T +++ + D P +D I+VDEAHR Sbjct: 513 --------KNPEQVGDVYVTTYNTMMN-LIGDDGDTPAKFGPFDFDLIIVDEAHRSVY-- 561 Query: 584 KEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH----TVQIF----GEPVYR 635 + ++RIL++FDA + LTATP T +F P + Sbjct: 562 -----------------NRFKRILEYFDAYVVGLTATPKSEIDHDTYALFEMEDKTPSFE 604 Query: 636 YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDT--------- 686 Y+ AV DG L+ P + Q+ ++L +G + +SP+ ++ DT Sbjct: 605 YSLDEAVADGNLV----PFKTAR---QDSLFLRRGMSYDELSPEEQLAWDTSDWGTDEDG 657 Query: 687 --LEDDQDFEVADFNRGLVIPAFNRAVCNELT-NYLDPTGSQ--KTLVFCVTNAHADMVV 741 L+ A+ NR L R V + N + G Q KT++F T HA+++ Sbjct: 658 GRLDPPGQVSSAEINRYLFNKDTIRKVLKTVVENGIRVGGDQLGKTIIFARTQRHAELI- 716 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRF-NKERLPNIVVTVDLLTTGV 800 + F +P+ IT + Q+ + F + + NI ++VD+L TGV Sbjct: 717 ---KQVFDATFPEYSRTGASVIT----THTKYAQSALDDFADPDGDVNIAISVDMLDTGV 769 Query: 801 DIPSICNIVFLRKVRSRILYEQMKGRATRLCPE-----VNKTSFKIFD-CVDI 847 D+P + N+VF + V S + QM GR TRL P+ ++KT F IFD C ++ Sbjct: 770 DVPEVVNLVFFKPVYSPTKFWQMVGRGTRLRPDLFGPGMDKTHFLIFDFCGNV 822 >UniRef50_C6BRN4 Type I site-specific deoxyribonuclease n=2 Tax=Proteobacteria RepID=C6BRN4_DESAD Length = 802 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 172/596 (28%), Positives = 251/596 (42%), Gaps = 144/596 (24%) Query: 294 QGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 Q ADYVL + +AV+EAKR ++ + ++ RY+ Sbjct: 51 QDIADYVLVYKGQKLAVIEAKRESLSDTEGVQQAKRYA---------------------- 88 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGRE-YRATMKTKSGIWYRDVRDTRNMSKALPE 412 + K F YSTNG YR M+T + + A P Sbjct: 89 ----------------DKLKTRFAYSTNGHTVYRIDMETGA----------ESHVDAFP- 121 Query: 413 WHRPEELLEMLGSEPQKQNQW--------FADNPGMSELGLRYYQEDAVRAVEKAIVKGQ 464 P+EL + +E +N+W F D G E RYYQ +A+ +AI G+ Sbjct: 122 --TPQELWDETFAE---ENEWRNRFSSVPFEDKGGTWEA--RYYQHNAINQALEAIAAGK 174 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQSQ-------------RFKRILFLVDRRSLGEQAL 511 ILL +ATGTGKT A + ++L S+ R RILFL DR L +QA Sbjct: 175 DRILLTLATGTGKTFIAFQLSWKLFHSRWNIKEWREGEEITRRPRILFLADRNILADQAY 234 Query: 512 GAF----ED--TRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK------RTLQS 559 +F ED RI+ D KG+ K + I Q+ + + + Sbjct: 235 NSFSAFPEDALVRISPDAIRK----KGMVPK----NGNIFFTIFQTFMSGIDAEGNSAPN 286 Query: 560 DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALT 618 P +D I++DE HRG D+ S +R IL++F AV++ LT Sbjct: 287 FGDYPPDFFDFIIIDECHRGGAKDE----------------STWRGILEYFAPAVQLGLT 330 Query: 619 ATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQI--ITRNAQEGVYLSKGEQ 672 ATP T FG+PVY Y+ + + DGFL P ++ I E VY S E Sbjct: 331 ATPRRTNNADTYGYFGDPVYTYSLKDGINDGFLT----PFKVVQIATTLDEYVYTSDDEI 386 Query: 673 VERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCV 732 + QGEV E+ + + +FNR + I A + +D SQKT+VF Sbjct: 387 I-----QGEV-----EEGKRYGENEFNRSIEIKAREEHRVKIFMDNIDQ--SQKTIVFGA 434 Query: 733 TNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVT 792 T HA ++ + + P + + + +K R Q N++ +P I+ T Sbjct: 435 TQHHAGILRDIINQQKTCSDPNYCVRVVAQDLAEGEKWLRIFQD-----NEKTIPTILTT 489 Query: 793 VDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIY 848 L+TGVD ++ NIV LR V S I ++Q+ GR TRL K F I+D V Y Sbjct: 490 SQKLSTGVDARNVRNIVLLRPVNSMIEFKQIVGRGTRLFD--GKDYFTIYDFVKAY 543 >UniRef50_Q7MPU7 Type I site-specific restriction-modification system, R (Restriction) subunit n=11 Tax=cellular organisms RepID=Q7MPU7_VIBVY Length = 817 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 173/649 (26%), Positives = 277/649 (42%), Gaps = 151/649 (23%) Query: 235 KRTLNLSEEES-RFLIDAQLRKAGWQ----ADSKTLRFSKGARPEPGVNKAIAEWPTGKD 289 K ++ L+E ++ R + +L+++GW+ A ++ F+ G ++ K Sbjct: 19 KNSMALNEADTCRVYVTPKLKESGWENNPSAITEQYTFTDGR----------VQFKGSKV 68 Query: 290 ETGNQGFADYVL-FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYS 348 + G Q ADY+L + PIAVVEAK N V + ++ Y++ Sbjct: 69 QRGEQKRADYLLKYTRDFPIAVVEAKPENSPVGQGMQQAKDYAEIL-------------- 114 Query: 349 PDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSK 408 + F YSTNG E I D T + Sbjct: 115 ------------------------GLKFAYSTNGHE----------ILEFDY--TTGEEQ 138 Query: 409 ALPEWHRPEELLEML----GSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ 464 L + P+EL + L G + + + + +S RYYQ+ A+ +++++G+ Sbjct: 139 LLSRFPTPDELFKRLCGDEGIKDEDLDTLLSPYHHVSGYSPRYYQQIAINRAVQSVLQGK 198 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQSQ-------RFKRILFLVDRRSL----GEQALGA 513 + L+ MATGTGKT A + ++L ++ R RILFL DR L ++ Sbjct: 199 KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTP 258 Query: 514 FEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV--KRTLQSDEPMPVARYDCI 571 F D R + + S +I+ A QS+ +R + P +D I Sbjct: 259 FGDARHKIEGGKVV------------KSREIYFAIYQSIASDERRPGLYKEFPQDFFDLI 306 Query: 572 VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALH----TV 626 ++DE HRG D S +R IL++F+ A +I +TATP T Sbjct: 307 IIDECHRGSARDN----------------SNWREILEYFEPAFQIGMTATPLREDNRDTY 350 Query: 627 QIFGEPVYRYTYRTAVIDGFLIDQDPPIQI---ITRNAQEGVYLSKGEQVERIS---PQG 680 + FG P+Y Y+ R + DGFL P ++ I+ G SKG+ V+R P G Sbjct: 351 RYFGNPIYTYSLRQGIDDGFLA----PYRVHRVISEVDAAGWRPSKGD-VDRFGREIPDG 405 Query: 681 EVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS-QKTLVFCVTNAHADM 739 E ++ DF R + + A A LT+++ T KT+VFCV HAD Sbjct: 406 E-----------YQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADE 454 Query: 740 V---VEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNK--ERLPNIVVTVD 794 + + L + +K+P D + ++T + K + ++RF + P I+ T Sbjct: 455 MRRALNNLNSDLSRKHP----DYVARVTSEEGKIGKG---HLSRFQELETSTPVILTTSQ 507 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 LLTTGVD P+ N+V R V S ++Q+ GR TRL + K F I D Sbjct: 508 LLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 >UniRef50_C9MRT3 Type I restriction-modification system, R subunit n=5 Tax=Bacteroidales RepID=C9MRT3_9BACT Length = 770 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 167/636 (26%), Positives = 266/636 (41%), Gaps = 139/636 (21%) Query: 239 NLSEEESRF-LIDAQLRKAGWQADSKTLR--FSKGARPEPGVNKAIAEWPTGKDETGNQG 295 +L+EE+ + I + KAGW+ + + F+ G + I + +TG + Sbjct: 11 DLTEEDIKLRFITPAINKAGWKNEHIRMEYYFTDG--------RVIFQGKVHARQTGKK- 61 Query: 296 FADYVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 ADY+LF KPIA++EAK NN + + ++ Y++ D Sbjct: 62 -ADYLLFHAANKPIAIIEAKDNNKPLGGGMQQAMEYAQILD------------------- 101 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 IPF YS+NG G D + +L ++ Sbjct: 102 -------------------IPFAYSSNG----------DGFLEHDFLTGKETELSLEQFP 132 Query: 415 RPEELLEMLGSEPQKQNQWFA--DNPGMSE---LGLRYYQEDAVRAVEKAIVKGQQEILL 469 P+ L + + + Q N+ + P S+ RYYQ AV +AI KG+ +L+ Sbjct: 133 TPDALYQRIINAKQLNNEALKIIEQPFYSDSYTYEPRYYQRIAVERTVEAIAKGRDRVLI 192 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQAL----GAFED--TRINGDT 523 MATGTGKT TA ++ RL S K+IL+L DR L +Q + F+ T+I G T Sbjct: 193 VMATGTGKTITAFQIIHRLKASGTKKKILYLADRNILIDQTMVQDFKPFKKVMTKIQGAT 252 Query: 524 FNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVAR---YDCIVVDEAHRGY 580 +S ++ +H+A LV ++P + +D I+VDE HRG Sbjct: 253 IDSAYE--------------VHMALYHQLVSNEEGVEDPFKQVQPTFFDLIIVDECHRGS 298 Query: 581 ILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATP----ALHTVQIFGEPVYR 635 D SA+R++L++F A +I +TATP + + FGEPV+ Sbjct: 299 AKDD----------------SAWRKVLEYFSTATQIGMTATPKAENGANNLDYFGEPVFT 342 Query: 636 YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLED------ 689 Y+ + DGFL P ++ Y+S I QG +D +D Sbjct: 343 YSLLQGIQDGFL----APYRVTNS------YIS-------IDLQGFKPSDDEKDLLGRDI 385 Query: 690 -DQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAA 747 + +E D R + V +T L G KT+VFC A+ + L Sbjct: 386 VQRLYERKDIGRDIAFTKRREIVAKRITKMLKQIGRMTKTIVFCTDIDEAE-AMRSLLVN 444 Query: 748 FKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICN 807 + +++ITGD + +++ I + P IV T +LL TGVD + Sbjct: 445 LNTDLCNRDPRYVMRITGDDNVGKKQLDNFIDV--DQAYPTIVTTSELLATGVDCKTCGL 502 Query: 808 IVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 IV +++ S ++Q+ GR TRL + K +I D Sbjct: 503 IVIDKEIGSMTEFKQIIGRGTRLRTDKGKWHLEILD 538 >UniRef50_A5UR94 Type III restriction enzyme, res subunit n=5 Tax=Bacteria RepID=A5UR94_ROSS1 Length = 899 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 184/689 (26%), Positives = 288/689 (41%), Gaps = 136/689 (19%) Query: 248 LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL-FVGLK 306 L+D L +AGW T RP+ G+ E DY+L + Sbjct: 12 LVDPLLNRAGWTRSQVTREHYY--RPDWQYTPGRVILRGGRVEREKPRVVDYLLRYTEAF 69 Query: 307 PIAVVEAKRNNIDVPARLNESYRYSKCFD---------------NGFLRET--LLEHYSP 349 PIAVVEAK ++ A L ++ RY++ + +GF T L E SP Sbjct: 70 PIAVVEAKAEDLPAVAGLEQAKRYARENNLMFAYATNGHEIIEWDGFTDTTRELKEFPSP 129 Query: 350 DEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKA 409 DE+ W+ +G K GR T+ ++ V R + Sbjct: 130 DELWR-------RWELNTGVHSPK------AAGR----TIAELRPLYNAAVAAARQRNPL 172 Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILL 469 L + P L GSEP RY+QE A+R +++GQ+ ILL Sbjct: 173 LHPYA-PSSLTR--GSEP------------------RYFQEAAIRETLVRVMRGQKRILL 211 Query: 470 AMATGTGKTRTAIAMMFRLIQSQ-------RFKRILFLVDRRSLGEQALGAFED-TRING 521 MATGTGKT TA+ ++++L++S R +ILFL DR L QA AF +G Sbjct: 212 TMATGTGKTFTAMQIVWKLVKSGWLHQQKGRAGKILFLADREVLRNQAYNAFSPFASDHG 271 Query: 522 DTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV---KRTLQSDEPMPVARYDCIVVDEAHR 578 D + + L+ ++ ++ Q+L R + E P +D ++VDEAHR Sbjct: 272 DPRFMLDGKRRLSLQY-----DLYFGIYQTLWATDPRGKRLFEQFPHDFFDVVIVDEAHR 326 Query: 579 GYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA----LHTVQIFG--E 631 ++ ILDHF+ A+ + +TATP + T F E Sbjct: 327 SGF-------------------GTWKEILDHFESAIHLGMTATPRQDENVDTYAYFCAEE 367 Query: 632 PV-----------------YRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 P Y Y+ + DGFL +++T ++G+++S Sbjct: 368 PAIPLDPQDPSKGVLHQAAYTYSLSQGIEDGFLATYKVH-RVLTSIDKDGLHIS------ 420 Query: 675 RISPQGE--VINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS-QKTLVFC 731 R+ QG ++ + + +++ +F R + +P + L L G KT+VFC Sbjct: 421 RVLEQGAEVIVPEDAKVREEYYTPNFEREIRLPDRTHTLVKHLAKLLRQFGPLHKTMVFC 480 Query: 732 VTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRF--NKERLPNI 789 V HA V L F L HD + I + + + Q + +F + + P + Sbjct: 481 VDVEHAREVARLLNNEFASL--GLGHDYAVPIVSE---EGEQAQRWLNQFQDSDRKTPVV 535 Query: 790 VVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYS 849 T +LL+TGVD+P+ NIVF++ + S IL++Q+ GR +RL P K F+I D + Sbjct: 536 ATTAELLSTGVDVPACRNIVFMKTISSPILFKQIIGRGSRLDPATGKLWFRIIDYTNATR 595 Query: 850 TLESV--DTMRPVVVRPKVELQTLVNEIT 876 L+ RPV V P QT + + T Sbjct: 596 LLDPRWDCPTRPVQVAPDPNAQTGIAQGT 624 >UniRef50_D0KYE6 Type I site-specific deoxyribonuclease n=2 Tax=Proteobacteria RepID=D0KYE6_HALNC Length = 783 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 156/523 (29%), Positives = 234/523 (44%), Gaps = 108/523 (20%) Query: 364 QDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEML 423 +D SGK I F Y+TNG+ GI+ D+ + L + P+EL Sbjct: 82 KDYSGK--LAIRFAYATNGQ----------GIYGIDMES--GVEAELANYPSPDELWART 127 Query: 424 GSEPQKQNQW---FADNPGMSELGL---RYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 + QN W FA+ P G RYYQ+ A+ V AI Q ILL +ATGTGK Sbjct: 128 FA---SQNIWRDRFAEVPFEDRGGYFQSRYYQDIAIERVLAAIADHQSRILLTLATGTGK 184 Query: 478 TRTAIAMMFRLIQSQ-------------RFKRILFLVDRRSLGEQALGAF----EDTRIN 520 T A + ++L S+ R RILFL DR L QA AF ED + Sbjct: 185 TFIAFQLAWKLFHSRWNLRDWQREAEPSRRPRILFLADRNILANQAFNAFSAFPEDALVR 244 Query: 521 GDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVAR------YDCIVVD 574 D DI+ + P++ + + Q+ + +P P +DCI++D Sbjct: 245 IDPA----DIRK-QGRVPKNGS-LFFTIFQTFMSGQDAEGQPAPYFGDYPPDFFDCIIID 298 Query: 575 EAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQIF 629 E HRG D+ S +R IL +F AV++ LTATP + T Q F Sbjct: 299 ECHRGGANDE----------------SNWRGILAYFAPAVQLGLTATPKRKDNVDTYQYF 342 Query: 630 GEPVYRYTYRTAVIDGFLIDQDPPIQI--ITRNAQEGVYLSKGEQVERISPQGEVINDTL 687 GEPV+ Y+ + + DGFL P ++ I E VY +P ++ + Sbjct: 343 GEPVFVYSLKDGINDGFLT----PFRVKQIATTLDEYVY----------TPDDTLVEGEI 388 Query: 688 EDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMV---VEEL 744 E + +E ADFN+ + I + +D +KT+VFC T HA V + ++ Sbjct: 389 EAGKRYEEADFNKIIEIKEREQKRVEIFMAQIDQ--REKTIVFCATQEHALAVRDLINQI 446 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRF--NKERLPNIVVTVDLLTTGVDI 802 +++ Y Q ++T + D + + + F N++ +P I+ T L+TGVD Sbjct: 447 KSSSNPDYCQ-------RVTAN---DGARGEHYLRDFQDNEKTIPTILTTSQKLSTGVDA 496 Query: 803 PSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 ++ NIV +R V S I ++Q+ GR TRL K F I+D V Sbjct: 497 RNVRNIVLMRPVNSMIEFKQIIGRGTRLYD--GKDYFTIYDFV 537 >UniRef50_B9MGJ1 EcoEI R domain protein n=4 Tax=Proteobacteria RepID=B9MGJ1_DIAST Length = 827 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 166/598 (27%), Positives = 254/598 (42%), Gaps = 146/598 (24%) Query: 297 ADYVLFVGLK-PIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADY LF P+AVVEAK N V A + ++ +Y++ Sbjct: 59 ADYALFFKANIPLAVVEAKDNQHAVGAGMGQAIQYAELL--------------------- 97 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDT-----RNMSKAL 410 +PF +++NG G +RD RN++ L Sbjct: 98 -----------------GVPFSFASNG----------DGFVFRDATLADGVLERNLT--L 128 Query: 411 PEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGL------RYYQEDAVRAVEKAIVKGQ 464 E+ P EL S W A+ ++ RYYQ +AV +AI GQ Sbjct: 129 EEFPSPAELW----SRYCAWKGWSAEESRIAGFDYAPNKTPRYYQLNAVNRAVEAIAAGQ 184 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQAL--------GAFED 516 +LL MATGTGKT TA +++RL +S KRILFL DR L +Q + GA Sbjct: 185 DRVLLVMATGTGKTYTAFQIIWRLWKSGAKKRILFLADRNILIDQTMVNDFRPFKGAMAK 244 Query: 517 T--------RINGDTFNSIFDIK---GLTDKFPEDSTKIHVATVQSLVKRTLQSD--EPM 563 R++ S+ D+ T K + S +I+++ Q++ + + + Sbjct: 245 LSPNAKGVERVDAQGAVSVEDVDLAVNKTTKLVDKSYEIYLSLYQAVTGTEEERNIYKQF 304 Query: 564 PVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA 622 +D IVVDE HRG + SA+R IL +F A +I LTATP Sbjct: 305 SPDFFDLIVVDECHRGSAAED----------------SAWRDILTYFAGATQIGLTATPK 348 Query: 623 ----LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 + FGEPVY Y+ + + DG+L P ++I + + + + Sbjct: 349 ETKDVSNTDYFGEPVYTYSLKQGIEDGYLA----PYKVIRVDLDKDTFGWR-PTAGMTDK 403 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS-QKTLVFC------ 731 G I D + + AD NR LV+ + V ++T YL T KT+VFC Sbjct: 404 HGHAIEDRI-----YTGADMNRKLVLEQRDAVVAAKITEYLKATDRYAKTIVFCEDIDHA 458 Query: 732 ------VTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKER 785 ++NA+AD+ A + KY +++ITGD + ++ I ++ Sbjct: 459 ARMRQALSNANADL------CATQPKY-------VVQITGDNIEGKLELDNFID--PEKT 503 Query: 786 LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 P I T L++TGVD + IV + ++S L++Q+ GR TRL ++ KT F I D Sbjct: 504 YPVIATTSKLMSTGVDAQTCKLIVLDQTIKSMTLFKQIIGRGTRLREDLGKTWFTILD 561 >UniRef50_A8ZXE8 Type III restriction protein res subunit n=9 Tax=Bacteria RepID=A8ZXE8_DESOH Length = 936 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 173/648 (26%), Positives = 283/648 (43%), Gaps = 160/648 (24%) Query: 248 LIDAQLRKAGWQADSKTLRFSK----GARPEPGVNKAIAEWPTGKDETGNQGFADYVLF- 302 LID L ++GW + A PE IAE T + G+Q F+DYVL Sbjct: 12 LIDKHLAQSGWNVKDPMQVVEEFDILMALPE-----GIAEPRTPYE--GHQ-FSDYVLLG 63 Query: 303 VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETS 362 +P+AVVEAK+++ D ++ +Y C++ Sbjct: 64 KDGRPLAVVEAKKSSKDAAIGREQAKQY--CYN--------------------------- 94 Query: 363 WQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEM 422 Q G + +PFC+ TNG E ++ D+ + + P +++ Sbjct: 95 IQKQLGGE---LPFCFYTNGLE----------TYFWDLDN-----------YPPRKVVGF 130 Query: 423 LGSEPQKQNQWFADN--PGMSEL-----GLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 + ++ Q+ N P EL R YQ A+RAV + I + +++ LL MATGT Sbjct: 131 PTRDDLERFQYIRRNHKPLTQELINTAIAGRDYQIRAIRAVLEGIEQKKRDFLLVMATGT 190 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKTRT+IAM+ L+++ ++ LFLVDR +L EQAL AF++ + + ++ + Sbjct: 191 GKTRTSIAMVDALMRAGHAEKALFLVDRIALREQALAAFKEHLPHEPRWPNV------GE 244 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 K +I+++T +++ + + +D IV+DE+HR Sbjct: 245 KLIAKDRRIYISTYPTMLNIIRDESQYLSPHFFDFIVIDESHRS---------------- 288 Query: 596 QLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFL 647 + Y ILD+F + + LTATP +T +IF G P + YT+ A Sbjct: 289 ---IYNTYGEILDYFKTITLGLTATPTDIIDHNTFRIFHCEDGLPTFAYTFEEAA----- 340 Query: 648 IDQDPP-------IQIITRNAQEGV------------YLSKGEQVERISPQGEVINDTLE 688 + PP ++I T+ +EG+ L +G+ V I+ +G + T+ Sbjct: 341 -NNVPPYLCSFQVMKIQTKFQKEGISKRTISLEDQKKLLLEGKDVAEINFEGTQLEKTV- 398 Query: 689 DDQDFEVADFNRG---LVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELR 745 N+G L++ F C + N + P KT+ FC T AHA + Sbjct: 399 ---------INKGTNTLIVKEFMEE-CIKDHNGVMPG---KTIFFCSTIAHA----RRME 441 Query: 746 AAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSI 805 F K YPQ + + + K+ D ++ +F +P + ++VD+L TG+D+ I Sbjct: 442 DIFDKLYPQHKGE-LAKVLVSEDPRVYGKGGLLDQFTNSDMPRVAISVDMLDTGIDVREI 500 Query: 806 CNIVFLRKVRSRILYEQMKGRATRLC----PE---VNKTSFKIFDCVD 846 N+VF + V S + QM GR TRL P+ + K F I DC D Sbjct: 501 VNLVFAKPVYSYTKFWQMIGRGTRLLEIAKPKPWCIEKDVFLILDCWD 548 >UniRef50_B1Y673 EcoEI R domain protein n=12 Tax=Bacteria RepID=B1Y673_LEPCP Length = 824 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 159/586 (27%), Positives = 256/586 (43%), Gaps = 122/586 (20%) Query: 297 ADYVLFVGLK-PIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADY LF L P+AVVEAK + V A + ++ Y+ D Sbjct: 60 ADYALFYKLNIPLAVVEAKDASHAVGAGMAQAINYAALLD-------------------- 99 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSK---ALPE 412 +PF +++NG G +RD + + L + Sbjct: 100 ------------------VPFSFASNG----------DGFIFRDATLADGVLERYLTLDQ 131 Query: 413 WHRPEELLEMLGSEPQKQNQWFADNPGMSELGL------RYYQEDAVRAVEKAIVKGQQE 466 + P EL + W A+ ++E RYYQ +A+ +AI +G+Q Sbjct: 132 FPSPAELWAKYCA----WKGWTAEVRKVAEFDYAPAKTPRYYQLNAINRTVEAIAQGRQR 187 Query: 467 ILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQAL--------GAFEDTR 518 LL MATGTGKT TA +++RL +S KRILFL DR L +Q + GA Sbjct: 188 ALLVMATGTGKTYTAFQIIWRLWKSCAKKRILFLADRNILIDQTMVNDFRPFKGAMAKLS 247 Query: 519 INGDTFNSIFDIKG------------LTDKFPEDSTKIHVATVQSLVKRTLQSD--EPMP 564 N + D +G T K + S +I+++ Q++ + +S+ + Sbjct: 248 PNAKGVERV-DAQGRVGVEDVTLAVNRTTKQVDTSYEIYLSLYQAVTGTSDESNIYKQFS 306 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA- 622 +D I+VDE HRG + S++R IL +F A ++ LTATP Sbjct: 307 PDFFDLIIVDECHRGSAAED----------------SSWREILSYFSSATQVGLTATPKE 350 Query: 623 ---LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ 679 + FGEP+Y Y+ + + DG+L P +++ + + + E ++ + Sbjct: 351 TQDVSNSDYFGEPIYTYSLKQGIEDGYLA----PYKVVRIDLDRDTFGWR--PTEGMTDK 404 Query: 680 -GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHA 737 G +I D + + AD NR LV+ + V ++T YL T + KT+VFC HA Sbjct: 405 LGNLIEDRV-----YTGADMNRRLVLERRDEVVAAKITEYLKATDREAKTIVFCEDIDHA 459 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 + + L A Q + +++ITGD + R++ I ++ P I T L++ Sbjct: 460 ARMRQALSNA-NADICQTQPRYVVQITGDNPEGKRELDNFID--PEKTYPVIATTSKLMS 516 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 TGVD + IV + ++S L++Q+ GR TRL ++ KT F I D Sbjct: 517 TGVDAQTCKLIVLDQNIKSMTLFKQIIGRGTRLREDLGKTWFTILD 562 >UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax=Cyanothece sp. PCC 8802 RepID=C7QWT4_CYAP0 Length = 1005 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 172/621 (27%), Positives = 265/621 (42%), Gaps = 150/621 (24%) Query: 248 LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGNQGFADYVLFV-GL 305 LID QL KAGW + ++ E P G D G DY L+ Sbjct: 12 LIDPQLAKAGWNVND--------------THQVGLEIPVDGYDAQPWNGVTDYCLYSPNG 57 Query: 306 KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQD 365 IAVVEAKR + D P + V Y T + Sbjct: 58 DVIAVVEAKRQSRD-----------------------------PRVAEQQVRHYVT---E 85 Query: 366 TSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDT-RNMSKALPEWHRPEELLEMLG 424 Q F+ PF + TNG + ++ DV ++ + E LL + Sbjct: 86 IEKHQSFR-PFAFLTNG----------NITYFWDVENSPKRQVAGFFSLRDLENLLYI-- 132 Query: 425 SEPQKQNQWFADNPGM----SELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 +QN+ NP ++ R YQ++A++ V + G + L+ MATGTGKTRT Sbjct: 133 ----RQNKI---NPSTLVVNRQISGRTYQQEAIQRVIERFEDGFRRGLIVMATGTGKTRT 185 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED 540 + ++ LI+S + +LF+ DR L QAL D F L D+ P D Sbjct: 186 IMGLIDLLIRSNHLRTVLFVADRDVLVRQALD---------DNFRVY-----LPDE-PSD 230 Query: 541 ---------STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGEL 591 S +++V T+Q+L K ++ P +D I+ DE HR Sbjct: 231 RIRSYNIDYSKRLYVGTLQTLTK-CCRNFTP---GFFDLIIFDECHRSI----------- 275 Query: 592 QFRSQLDYVSAYRRILDHFDAVKIALTATPAL----HTVQIF----GEPVYRYTYRTAVI 643 + +R +LD+FD + LTATPA +T Q F G P + Y Y+ A+ Sbjct: 276 --------YNQFREVLDYFDGKILGLTATPATAIDRNTFQAFHCFEGIPTFLYEYQQAIN 327 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLE-DDQDFEVADFNRGL 702 DG L+D Q T +EG+ + ++ +R +I ++ DD D+E + + + Sbjct: 328 DGNLVDYSL-YQAQTHFQREGIRGANLDEEDR----NMLIEQGIDPDDIDYEGTELEKKV 382 Query: 703 VIPAFNRAVCNELTN--YLDPTGS--QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 R E+ + D +G KT++F VT HA L+ F + YPQ Sbjct: 383 SNRDTLRKQWTEIMEVCHKDESGQLPGKTIIFAVTQKHA----HRLKEVFDEMYPQFSEM 438 Query: 759 AIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRI 818 + ++ + K + +I +F KE +P I ++VDL+ TGVDIP + N+VF++ V+S I Sbjct: 439 VQVIVS-----EMEKTKDLIDKFKKEEMPRIAISVDLMDTGVDIPEVVNLVFMKPVQSFI 493 Query: 819 LYEQMKGRATR---LCPEVNK 836 +QM GR TR C +N+ Sbjct: 494 KLQQMIGRGTRNHEACKYLNR 514 >UniRef50_A4FZ35 Type III restriction enzyme, res subunit n=1 Tax=Methanococcus maripaludis C5 RepID=A4FZ35_METM5 Length = 912 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 172/641 (26%), Positives = 285/641 (44%), Gaps = 143/641 (22%) Query: 240 LSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 L+E+++R LID +L++ GW K ++ + NK G E+G+ + D Sbjct: 9 LNEKQTRKRLIDTELKRVGWL--EKYIKEEVNSVKSDFKNKNYI-LDNGIYESGDH-YID 64 Query: 299 YVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 Y+L PIA++EAKR YSK +G ++ + VP Sbjct: 65 YLLLGEDNSPIAIIEAKR--------------YSKDPQDGRIQARTYAKDIESQTGVNVP 110 Query: 358 EYETS---WQ--DTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 + T+ W+ D G +R K+ +S E RA + +++ + +++ Sbjct: 111 IFLTNGYVWELIDEKGIER-KVSRPFSQKDIERRADL-------FKNEKSPKDL------ 156 Query: 413 WHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMA 472 + N + D P ++ V+ + + +G ++ L+ MA Sbjct: 157 ----------------EINSYIVDRPRSVQI---------VKRLSEHFSEGHKKALIEMA 191 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALG-AFEDTRINGDTFNSIFDIK 531 TGTGKTR A+A+ LI+S + ILF+ DR L +QAL F+ I+ + Sbjct: 192 TGTGKTRVAMAVCDILIRSNYARNILFIADRTVLVDQALNKGFKKYFIDEA-------VA 244 Query: 532 GLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM----PVARYDCIVVDEAHRGYILDKEQT 587 L + + DS +++V+TVQ+L D+P+ +D ++ DEAHR Y DK Sbjct: 245 DLRNGYNLDS-RLYVSTVQTLK----NGDDPLFEKYSPGFFDLVIFDEAHRSY-YDKNNV 298 Query: 588 EGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFG----EPVYRYTYR 639 I+++FDA++I LTATP + +T +FG P Y+Y Sbjct: 299 ------------------IMNYFDAIQIGLTATPKDEVSHNTYDLFGCDKGVPTAEYSYD 340 Query: 640 TAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQD-----FE 694 AV DG L+ P I I E LS G +E I ++ + +QD F Sbjct: 341 EAVQDGVLV---PYIGKII----ETEVLSLG--IEGIKLSDDLKDQLRRQEQDPDLTEFS 391 Query: 695 VADFNRGLVIPAFNRAVCNELTNYL---DPTGSQKTLVFCVTNAHADMVVEELRAAFKKK 751 ++F R + N + ++ Y D + KT+ FC+ HA ++++ F K Sbjct: 392 GSEFERIFLDDKTNELIIHQFMKYCYRSDDSKPAKTIFFCMGKEHA----KKIKKLFSKL 447 Query: 752 YPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFL 811 YP +D + ++ D ++ Q + RF E P IV++V ++ TGVD+P + N+VF+ Sbjct: 448 YPSYSNDVQVILS-----DMQRYQDEVKRFEHESEPRIVISVGIMDTGVDVPEVSNLVFV 502 Query: 812 RKVRSRILYEQMKGRATR---LC------PEVNKTSFKIFD 843 + V S+ + QM GR TR C PE +K F I D Sbjct: 503 KPVFSKTRFWQMVGRGTRNFKACDHPEWLPEGDKKDFLILD 543 >UniRef50_Q4HNM6 Type I restriction-modification system, R subunit n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HNM6_CAMUP Length = 813 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 170/666 (25%), Positives = 279/666 (41%), Gaps = 148/666 (22%) Query: 234 IKRTLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETG 292 +K NLSEE+++ I+ L K GW +S + + A+ + ++ + TGK + Sbjct: 1 MKALQNLSEEDTKKRYIEPALSKVGWDFESIKMEYGVKAK-DYEFSEGKIDIKTGKRDKS 59 Query: 293 NQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEV 352 ADYVLF +AV+EAK + + ++ Y+K Sbjct: 60 TIKKADYVLFYNGIALAVLEAKAYKYEDSEGIEQAKNYAKAL------------------ 101 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSK---A 409 K PF +S++G+ + + Y +D + ++K Sbjct: 102 --------------------KAPFAFSSSGKGF---------VKYTLTKDFKGVAKENLP 132 Query: 410 LPEWHRPEELLEMLGSEPQKQN-QWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEIL 468 L + P EL E N + +S+ RYYQ +A+ A A KGQ IL Sbjct: 133 LNAFPSPGELYEAYKKWQNLTNDNLLQTHCDLSQTTPRYYQNNAINAALIATQKGQSRIL 192 Query: 469 LAMATGTGKTRTAIAMMFRLI-----QSQRFKRILFLVDRRSLGEQALGAFEDTRINGD- 522 L +ATGTGKT A + RL ++ ++IL+L DR L IN D Sbjct: 193 LVLATGTGKTLIAYQIAHRLFNQTLPNGKKIEKILYLADRNEL------------INTDT 240 Query: 523 --TFNSIFD-IKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVAR------YDCIVV 573 TF S I + ++ + ++ Q + + ++++ + +D I + Sbjct: 241 TRTFKSFAKGIYKIENRNFKSGYSLYFGIYQQFISGSEENNDKKEHYKALKPDFFDLIFI 300 Query: 574 DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALH-------- 624 DE HRG ++ D S +R IL++F+ A++I +TATP + Sbjct: 301 DECHRG--------------SARAD--STWREILEYFNSALQIGMTATPKYNKEQRESQE 344 Query: 625 ----------TVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITR--NAQEGVY---LSK 669 + FGEPVY+Y+ + + DG+L P +I N + Y L K Sbjct: 345 AGELEKRDDDNIDYFGEPVYQYSLKQGIDDGYL----APFSVIENLSNIEMQGYTPELGK 400 Query: 670 GEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ---K 726 ++ R PQ + F DFNR + + R V +++ +L T K Sbjct: 401 RDEEGREIPQ-----------ETFNSPDFNRTIYLKPQIRFVAKKVSKFLHHTLKNPYAK 449 Query: 727 TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFN--KE 784 T++FC HA ++ + L+ K++ + + + I +IT D DK + ++ F + Sbjct: 450 TIIFCEDQRHALLMKDALQDENKQEVAK-DSNYITRITSDDDKG----KALLDNFKSVSK 504 Query: 785 RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL---CPEVNKTSFKI 841 R P I T LL+TGVD + IV + VR + L++QM GR TRL KT F + Sbjct: 505 RYPVIATTSQLLSTGVDTQMVQVIVIDKIVRDKSLFKQMIGRGTRLNEVLESKGKTHFYV 564 Query: 842 FDCVDI 847 D I Sbjct: 565 LDFKGI 570 >UniRef50_B2IMB0 Type I restriction-modification system, R subunit n=31 Tax=Bacteria RepID=B2IMB0_STRPS Length = 777 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 157/569 (27%), Positives = 250/569 (43%), Gaps = 100/569 (17%) Query: 297 ADYVLFVGLKP-IAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 +DY L+ IA+VEAK N V A L ++ Y + D Sbjct: 62 SDYSLYYQFGTRIAIVEAKDNKHSVRAGLQQAIEYGEILD-------------------- 101 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREY----RATMKTKSGIWYRDVRDTRNMSKALP 411 +PF YS+NG + R T + + S+ Sbjct: 102 ------------------VPFVYSSNGDGFIEHDRITREERELELDEFPTREELFSRMTK 143 Query: 412 EWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 E E+ E + S P + + P RYYQ+ A+ + + +GQ+ ++ M Sbjct: 144 EKGLTYEITEAI-STPYYTDAFSMKTP-------RYYQQIAINRTIETVARGQKRVMFVM 195 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIK 531 ATGTGKT A ++ RL ++ KR+LFL DR L +Q + ED + I K Sbjct: 196 ATGTGKTFMAFQIIHRLRKAGLAKRVLFLADRNILVDQTMA--EDFKPFEKVMTKI-TPK 252 Query: 532 GLTDKFPEDSTKIHVATVQSLVKR--TLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 LT +S +I++ Q L T + +D IV+DEAHRG KE Sbjct: 253 LLTAPEKLNSFEIYLGLYQQLTGEDGTETHYQKFDKDFFDLIVIDEAHRGSA--KEN--- 307 Query: 590 ELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQIFGEPVYRYTYRTAVID 644 S +R+++D+F A +I +TATP + FGEP+Y Y+ + + D Sbjct: 308 -----------SNWRKVIDYFSSATQIGMTATPKETKNASNTEYFGEPIYTYSLKQGIED 356 Query: 645 GFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVI 704 GFL P +++ N V + E ++ G++I +D+ + DF++ +VI Sbjct: 357 GFL----APYRVMRVNLDVDVDGYRPE-TGKVDANGQLI-----EDRYYGRKDFDKTIVI 406 Query: 705 PAFNRAVCNELTNYLDPTGSQ--KTLVFCVTNAHADMVVEELRAAFKKK---YPQLEHDA 759 + V +++Y+ ++ KT+VFCV HA E +RAA K+ Q ++ Sbjct: 407 DDRTQRVAKFVSDYMKQNNARFDKTIVFCVDIDHA----ERMRAALVKENLDLVQEDYRY 462 Query: 760 IIKITGD-ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRI 818 ++++TGD A+ A+ M N P IV T LLTTGV+ + IV ++S Sbjct: 463 VMQVTGDNAEGKAQLDNFMDVNSN---FPAIVTTSKLLTTGVNAKTCRLIVLDSNIQSMT 519 Query: 819 LYEQMKGRATRLCPEVNKTSFKIFDCVDI 847 ++Q+ GR TRL P+ K F I D ++ Sbjct: 520 EFKQIIGRGTRLYPQKGKEFFTIIDFRNV 548 >UniRef50_B6ALE7 Putative DEAD/DEAH box helicase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALE7_9BACT Length = 756 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 126/426 (29%), Positives = 196/426 (46%), Gaps = 70/426 (16%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 +R YQ++A++A+++ I G++ L+ + TGTGKT + RLIQ+ +RILFLVDR Sbjct: 171 VRPYQKEAMQALDRTIELGKRRFLIELPTGTGKTDLISLYLKRLIQAGYAERILFLVDRD 230 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L QA+ A +D + L +I V +Q+++ R + Sbjct: 231 QLARQAIEAIQD-------LLPVHSSYWLKSGMVRQEKQITVCLLQTMIGRVAE----FT 279 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH 624 +D +V DE HR A++ L FDA+ I +TATPA++ Sbjct: 280 SGYFDVVVADECHRSI-------------------YGAWQTALTRFDALHIGMTATPAMY 320 Query: 625 ----TVQIFG----EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERI 676 T + P Y Y+ + A DG+L+ I T LS+G Sbjct: 321 IERNTFDFYQCQDETPDYSYSIQEAFRDGYLVPYKFATGITT-------ILSEG------ 367 Query: 677 SPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDP---TGSQKTLVFCVT 733 + +GE D E ++ + NR L++ F+R + ++ L P TG K++VF +T Sbjct: 368 ADEGEEHYDPAEFERKWTNKSTNR-LMMKEFDR-ISWQIYKDLAPGQRTGPGKSVVFAIT 425 Query: 734 NAHADMV---VEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIV 790 HA + + EL K +Y ++ IT D DA +I RF +E P + Sbjct: 426 KHHAARLARYLNELHPEAKGRYAEV-------ITSDI-PDA---NDLIRRFKREEYPQVA 474 Query: 791 VTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST 850 V+V +L TG D I ++V R+VRS ILY+QM+GR TR + K F I+D + Sbjct: 475 VSVGMLDTGFDCREILHLVLCRRVRSPILYQQMRGRGTRTADHIGKNKFIIYDFFKNHEY 534 Query: 851 LESVDT 856 DT Sbjct: 535 FNDSDT 540 >UniRef50_A3CUH7 Type III restriction enzyme, res subunit n=3 Tax=Methanomicrobia RepID=A3CUH7_METMJ Length = 945 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 124/430 (28%), Positives = 199/430 (46%), Gaps = 88/430 (20%) Query: 453 VRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALG 512 V+ V + I KG ++ L+ MATGTGKTR A+A++ L+Q R +++LFL DR++L +QA Sbjct: 172 VKRVLEHIRKGHRKGLIVMATGTGKTRVAMAIIDALLQENRAQKVLFLADRKALRDQAWN 231 Query: 513 AFEDTRINGDTFNSIFDIKGLTDKFPEDST------------KIHVATVQSLVKRTLQSD 560 KG + FP ++ +++V+T+Q+ + Q D Sbjct: 232 ------------------KGFLEFFPHEAKDKILHGIYNKEKRLYVSTIQTFQEIYTQKD 273 Query: 561 EP----MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIA 616 + +D I DEAHR I +K +R + + DA++I Sbjct: 274 RHGQNLISPGEFDLIFSDEAHRS-IYNK------------------WRDVFTYLDAMQIG 314 Query: 617 LTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFLID-QDPPIQIITRNAQEGVYL 667 LTATPA T + F P Y+Y AV DG L+D + I T EG++ Sbjct: 315 LTATPAELVDRDTFRFFHCNDNMPTALYSYDEAVKDGVLVDFRKSIIGAQTHFQIEGLHP 374 Query: 668 SKGEQVERISPQGEVINDTLED-DQDFEVADFNRGLVIPAFNRAVCNELTN--YLDPTGS 724 S + ER +I ++ + +FE + + + + + A+ E +D G+ Sbjct: 375 SDLTESER----NRLIEQGIDPYEINFEGTELEKKVAVKGTSEAIVREFMEGCQMDQAGT 430 Query: 725 --QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFN 782 K++ F ++ HA L AF YP+ + I D D R + +I F Sbjct: 431 LPAKSIFFAISKKHA----RRLHEAFDDLYPEYKGRLARIIVSD---DPR-AEALIHDFE 482 Query: 783 KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR---------LCPE 833 E P + ++VD+L TG+D+P +CN+VF + V S+I + QM GR TR P+ Sbjct: 483 HESFPRVAISVDMLDTGIDVPEVCNLVFAKPVFSKIKFWQMLGRGTRSDGACKHREWLPD 542 Query: 834 VNKTSFKIFD 843 +K FK+FD Sbjct: 543 GHKEYFKVFD 552 >UniRef50_B7JWD2 EcoEI R domain protein n=2 Tax=Bacteria RepID=B7JWD2_CYAP8 Length = 875 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 163/597 (27%), Positives = 261/597 (43%), Gaps = 88/597 (14%) Query: 446 RYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKR-ILFLVDRR 504 RY+QE A+R V + I+K Q+ ILL MATGTGKT TA ++++L QS ++ ILFL DR Sbjct: 179 RYFQEVAIRRVIERILKQQRRILLTMATGTGKTFTAFQIVWKLKQSGWLRKPILFLSDRL 238 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTK-IHVATVQSL--VKRTLQSDE 561 L +Q+ F D +G+ +K +S + ++ A Q+L +K Sbjct: 239 ILRDQSYNTF------APFVAPSADPRGVIEKGKFNSNRELYFALYQALDALKEGESLFS 292 Query: 562 PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTAT 620 +P + I++DE HR + IL HF A+++ +TAT Sbjct: 293 QIPADFFGLIIIDECHRSGF-------------------GKWNGILQHFTGAIQLGMTAT 333 Query: 621 P----ALHTVQIFGE-------------------PVYRYTYRTAVIDGFLIDQDPPIQII 657 P ++ T F P Y+Y+ + DGFL ++ Sbjct: 334 PKQDESIDTYAYFCAEESEIPLDPDDNSKGTWKPPAYQYSLGQGIDDGFLATYKVH-KVR 392 Query: 658 TRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTN 717 T + G++L Q RI I + +E Q + F R + +P + + + L Sbjct: 393 TTVDKNGLHL----QEARIQGAEIYIPEDVEPRQQYLTGQFEREITLPDRTKTMVSHLAG 448 Query: 718 YLDPTGS-QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQT 776 L G +KT+VFCV HA +V L+ F + I+ G+A + Q Sbjct: 449 LLRQFGEREKTMVFCVDMTHARLVARLLQNEFAELGYSNYAVPIVSEEGEAQAWLEQFQ- 507 Query: 777 MITRFNKERL-PNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN 835 + +RL P + T +LL+TGV++PS NIVF++ + S IL++Q+ GR +R+ P Sbjct: 508 -----DSDRLTPIVATTAELLSTGVNVPSCRNIVFMKPISSPILFKQIIGRGSRIDPATG 562 Query: 836 KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHS 895 K F+I D V + D RP+ P+ IT + T I +GR + Sbjct: 563 KEWFRIIDYVGASRLFDQWD--RPIGELPQA--------ITGARTSII---EGRVIHGDT 609 Query: 896 HEQLV-AKLQRIIGLATFNRDRSETI--DKQVRRLDELCQDAAGVNFNGFASRLREKGPH 952 E LV A + +IG+ N+ S + D RL+ L + G R RE Sbjct: 610 EEFLVGASVSALIGV---NQQLSPILTDDNGYFRLEALPAGKIRLFLRGNGFRSREITLE 666 Query: 953 WSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLE 1009 +AE N+ + L +K + + + + I DEV + G+ T +L+ Sbjct: 667 -TAE--NETLTVVLALNSVKPPVGKIRVEGLEVTIADEVTFIVDATGEQLTLAQYLD 720 >UniRef50_UPI0001BC3736 type I restriction-modification system, R subunit n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC3736 Length = 917 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 178/683 (26%), Positives = 283/683 (41%), Gaps = 172/683 (25%) Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAE--WPTGKDETGNQGFA 297 L EE++R ID QL +GW S+ P ++ A+ E GK+ + Sbjct: 2 LPEEKARVKIDKQLMDSGWNIVSRDEYI-------PNLSLAVKEALMQGGKE-------S 47 Query: 298 DYVLFVGLKPIAVVEAKRN----NIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 DY+LFV K IAV+EAK+ IDV A+ E+Y + Sbjct: 48 DYLLFVDNKAIAVIEAKKEEKSLGIDV-AKQAENYAVTP--------------------- 85 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRD-VRDTRNMSKALPE 412 + +W D IP Y NG + I +++ + D+ L E Sbjct: 86 ---KNWYGTWFDNL------IPLVYLANGNK----------ILFKNMLTDSDGDYIELTE 126 Query: 413 WHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMA 472 H P+++L+++ + + + P + E GLR Q +A E +I KGQ++ L +A Sbjct: 127 MHSPKKMLQLIEMKSE-----YGALPRIEEKGLRNCQYEAEVNFENSIRKGQKKALAVLA 181 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFE--DTRINGDTFNSIFDI 530 TG+GKT A +R + + +R+LFL DR +L QA F+ D N ++ I Sbjct: 182 TGSGKTYLACLAAYRQLNYTQTRRVLFLADRNNLARQAETEFKLFDRTEKQQPLNDLYTI 241 Query: 531 KGLT--DKFPEDSTKIHVATVQSLV-----------------KRTLQSDE---------- 561 LT DK D I ++T+Q L ++ SDE Sbjct: 242 NRLTKPDKINSD---IVISTIQKLFAVLTGQKIDDIDEDEEDDKSFISDEKDEPEVKLGN 298 Query: 562 --PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALT 618 + + I+VDE HR I K Q+ +L +F DA + LT Sbjct: 299 NLKLSPDHFQFIIVDECHRS-IYGKWQS------------------VLKYFKDAKILGLT 339 Query: 619 ATPALHTVQIFGEPVY-RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 ATP F + +YTY +++DG + + +I T + G + KG V + Sbjct: 340 ATPKPEAYAFFNNNIIEKYTYEDSIVDGVNV-PNRVYRIKTEQTEHGGAIEKGATVIETT 398 Query: 678 PQGEVINDTLEDDQ-DFEVADFNRGLVIP--------AFNRAVCNELT-------NYLDP 721 G+ ++ + + + D+ A +R +V P F +++ +L NY+ Sbjct: 399 RNGKKVDFYISNKRIDYTEAQLDRSIVSPEQIRLNLEEFKKSIYTDLFPERKVSWNYI-- 456 Query: 722 TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII------KITGDA-DKDARKV 774 KTL+F + HA +V ++ F + + D+II KIT A D DA Sbjct: 457 ---PKTLIFAKDDHHATEIVNIVKEVFAQNF----DDSIIPEKFVQKITYSAGDTDA--- 506 Query: 775 QTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE- 833 +I F + I VTV L+ TG D+ + + F+R V S +LY QMKGR R+ + Sbjct: 507 --LIREFRTNKEFRIAVTVTLVATGTDVKPLEVVFFMRDVNSDVLYTQMKGRGCRVISDD 564 Query: 834 ---------VNKTSFKIFDCVDI 847 K F I D + + Sbjct: 565 KLREVTPNATTKDCFYIVDAIGV 587 >UniRef50_Q8EUU6 Type I restriction-modification system R subunit n=1 Tax=Mycoplasma penetrans RepID=Q8EUU6_MYCPE Length = 622 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 122/422 (28%), Positives = 204/422 (48%), Gaps = 72/422 (17%) Query: 446 RYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRS 505 RYYQ A+ + + KG+ ++LL +ATGTGKT A +++RL +S K+IL+L DR Sbjct: 8 RYYQRVAINKTVEEVAKGKNKLLLVLATGTGKTYVAFQIIWRLWKSGIKKKILYLADRNI 67 Query: 506 LGEQAL-GAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQ-----------SLV 553 L +Q + G F+ + NS++ I+ + + S +I+++ Q L+ Sbjct: 68 LIDQTIAGDFKPFK------NSLYKIEK---RNMDTSYQIYLSLYQQLSESNEEDNLELL 118 Query: 554 KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-A 612 KR+ + D +D I+VDE HRG + S +R+IL++FD A Sbjct: 119 KRSFKPD------FFDLIIVDECHRGSARND----------------SNWRKILEYFDSA 156 Query: 613 VKIALTATPA----LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLS 668 KI +TATP + + FGEP+Y Y+ + + DG+L P ++I N + Sbjct: 157 TKIGMTATPKETSEISNIDYFGEPIYTYSLKDGINDGYL----APFEVIRFNTNIDSFGY 212 Query: 669 KGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTG-SQKT 727 + E+ ++ +G ++ D + D N +VI ++ V +T++L T ++KT Sbjct: 213 RPEK-GKLDVEGNLVEDRF-----YNPRDINTKIVIEERDKLVAKCITDFLKKTDRNKKT 266 Query: 728 LVFCVTNAHADMVVEELRAAFKKKYPQL---EHDAIIKITGDADKDARKVQTMITRFNKE 784 +VFCV HA E +R A + L + +++ITGD + + + Sbjct: 267 IVFCVDIEHA----ERMRRALANENSDLCAKDSRYVMRITGDESTGKGESENFCD--DDL 320 Query: 785 RLPNIVVTVDLLTTGVDIPSICNIVFLRK---VRSRILYEQMKGRATRLCPEVNKTSFKI 841 P IV T LLTTGV+ + C ++ L ++Q+ GR TR+ + NK F I Sbjct: 321 DYPTIVTTSKLLTTGVNCRT-CKVIVLDNNFGENGMTEFKQIIGRGTRIQEDKNKLYFTI 379 Query: 842 FD 843 D Sbjct: 380 LD 381 >UniRef50_B3H2F8 Type I restriction enzyme R protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B3H2F8_ACTP7 Length = 787 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 126/419 (30%), Positives = 197/419 (47%), Gaps = 69/419 (16%) Query: 446 RYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRS 505 RYYQE+A+ +A+ KG+ ILL MATGTGKT TA ++ RL S +++LFL DR Sbjct: 175 RYYQENAINLTIEAVAKGRNRILLVMATGTGKTYTAFQIIHRLKASGAKRKVLFLADRNV 234 Query: 506 LGEQALG----AFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRT----L 557 L +Q + F+D + +++K + S ++++A Q L T Sbjct: 235 LVDQPMTQDFKPFKDKMVK------------VSNKKLDSSFEVYLALYQQLDGETDNELF 282 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIA 616 + +P + +D I++DE HRG KE S +R IL++F+ A I Sbjct: 283 KQFQP---SFFDLIIIDECHRGSA--KED--------------SNWRAILNYFNEATHIG 323 Query: 617 LTATPA----LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ---EGVYLSK 669 +TATP + FG+P+Y Y+ + ++ DGFL P ++I + +G +K Sbjct: 324 MTATPKETADASNISYFGDPIYTYSLKQSIEDGFL----APYRVIRVDLDCDLKGWRPTK 379 Query: 670 GEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS-QKTL 728 G GE++ D L + + DF+ +++ V +T +L T KT+ Sbjct: 380 G----LTDKNGELVEDRL-----YTIKDFDYNIILNDRTCLVAERITEFLKKTNRLDKTI 430 Query: 729 VFCVTNAHADMVVEE---LRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNK-E 784 VFC HA +V E L A K P+ I +ITGD ++ N+ Sbjct: 431 VFCANINHAQRMVAELSRLNADMLAKNPKY----IRQITGDQTGKNDDLEAFCDVQNEGN 486 Query: 785 RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 P I VT L+TTGVD + +V ++S ++Q+ GR TRL + K F I D Sbjct: 487 AYPVIAVTSKLMTTGVDSKTCKLVVLDANIQSMTEFKQIIGRGTRLRTDAGKEFFTILD 545 >UniRef50_A1SRA3 Type III restriction enzyme, res subunit n=4 Tax=Bacteria RepID=A1SRA3_PSYIN Length = 860 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 172/673 (25%), Positives = 280/673 (41%), Gaps = 164/673 (24%) Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 +N +E E+R LI +L GW +++ R E G+ A G + + Sbjct: 1 MNRNESETRADLISPKLALDGWGTTERSI-----IRREFGIT---AGRILGGGKRASSLS 52 Query: 297 ADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 +DYVL + +A VEAKR ++ + ++ Y+ Sbjct: 53 SDYVLEFQGRKLAAVEAKRESLSYTEGVRQAKDYA------------------------- 87 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGRE-YRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 QR + F Y+TNG + Y+ M T + + + Sbjct: 88 -------------QRLQCRFAYATNGHDIYQIDMLT-------------GFEQLVDNYLS 121 Query: 416 PEELLEML------GSEPQKQNQW---FADNPG--MSELGLRYYQEDAVRAVEKAIVKGQ 464 P ++ + +EP W FA P + RYYQE+A+ +AI G+ Sbjct: 122 PADMWRLCFEPVTGKTEPDYTATWRTRFAQIPFEFKGDWQPRYYQENAINQALEAIALGK 181 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQS-------------QRFKRILFLVDRRSLGEQA- 510 ILLA+ATGTGKT A ++L S ++ RILFL DR L +QA Sbjct: 182 DRILLALATGTGKTCIAFQTAWKLFHSRWSLQAAKNPSNAKKRPRILFLADRNILTKQAF 241 Query: 511 --LGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE------- 561 GAF + + T + I KG+ P++++ I +A Q+L+ + + Sbjct: 242 NDFGAFGEDAVVRITPSEIKKAKGV----PKNAS-IFMAIFQTLMTDSASNPTNDSDEEE 296 Query: 562 -------PMPVAR--------------YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 +P+ +D I++DE HRG D+ Sbjct: 297 LPEDEDYSLPIVTDTSNCNFRQYPEDFFDFIIIDECHRGGANDE---------------- 340 Query: 601 SAYRRILDHF-DAVKIALTATPA----LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 S++R IL++F AV++ LTATP + + + FGEPVY YT + + DGFL P + Sbjct: 341 SSWRDILNYFAPAVQLGLTATPKRTDNVDSYKYFGEPVYSYTLKEGINDGFLT----PFK 396 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQD--FEVADFNRGLVIPAFNRAVCN 713 VY G E G+ + E + ++ DFNR + +P + + Sbjct: 397 ---------VYPIVGTMDEYQYTPGDAVTFKGEPEAGRVYKEGDFNRIITMPQREQKRVH 447 Query: 714 ELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITG-DADKDAR 772 ++++P KT+VFC T HA MV + + +K ++IT D Sbjct: 448 YWMDHINP--HDKTIVFCGTQEHAGMVRDYINQYAVQKGWTTNPTYCVRITANDGAAGEN 505 Query: 773 KVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 ++T N++ +P I+ T L+TGVD ++ NIV +R + I ++Q+ GR TRL Sbjct: 506 DLRTFCD--NEKTIPTILTTSRKLSTGVDARNVRNIVLMRPCNNMIEFKQIIGRGTRL-- 561 Query: 833 EVNKTSFKIFDCV 845 K+ F ++D V Sbjct: 562 YDGKSFFTVYDFV 574 >UniRef50_C8PRL3 Type I restriction-modification system, R subunit n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PRL3_9SPIO Length = 592 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 165/672 (24%), Positives = 280/672 (41%), Gaps = 147/672 (21%) Query: 235 KRTLNLSEEESRFLIDAQLRKAGWQADSKTLR---------FSKGARPEPGVNKAIAEWP 285 K+ L+ + S++++ A + ++GW ++ F KG + + G+ K Sbjct: 4 KKALSERDIISKYILPA-IEQSGWNMQTQMKEEVSFTDGRIFVKGRKTKRGIRKR----- 57 Query: 286 TGKDETGNQGFADYVLFVGLK-PIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLL 344 AD +L+ P+AV+EAK NN A + ++ Y++ D Sbjct: 58 -----------ADIILYYKANIPVAVIEAKDNNHAAGAGMQQALEYAEMLD--------- 97 Query: 345 EHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTR 404 IP ++NG + + G + + Sbjct: 98 -----------------------------IPVAVASNGDGFVIQYRNNCGQIGNNGKPIV 128 Query: 405 NMSKALPEWHRPEEL---------LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRA 455 + L + P+EL LE + +F D G + RYYQ A+ Sbjct: 129 TENADLDHFPTPDELWDNYKKYNKLETKKAAETSLCPYFFDAAGRTP---RYYQRIAINR 185 Query: 456 VEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFE 515 +AI +G++ +LL MATGTGKT TA +++RL +S+ KRIL+L DR +L Q Sbjct: 186 TVEAIARGEKRLLLVMATGTGKTYTAFQIIYRLWKSKIKKRILYLADRNNLITQTK---- 241 Query: 516 DTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD--EPMPVARYDCIVV 573 GD + + K + S +I++A Q L ++D + +D I+V Sbjct: 242 ----KGDFKHFKDKCHIIKQKKIDTSYEIYLALYQGLTNYDDEADAYKNFSPNFFDLIIV 297 Query: 574 DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQI 628 DE HRG +D A+ +IL +F A +I +TATP L ++ Sbjct: 298 DECHRG----------------SVDADKAWHKILQYFSSATQIGMTATPKETKNLSNIEY 341 Query: 629 FGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ---EGVYLSKGEQVERISPQGEVIND 685 FGEP+Y Y+ + + DGFL P +++ EG +G + GE+I D Sbjct: 342 FGEPIYTYSLKQGIDDGFL----APYKVLRVGMNVDLEGYRPERG----KTDVNGEIIED 393 Query: 686 TLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEEL 744 L + DF+R +VI V ++ YL+ + KT+VFCV HA+ + + L Sbjct: 394 RL-----YNRKDFDRSIVIDERTDVVAKKIMEYLNNSEPMAKTIVFCVDIEHAERMRQAL 448 Query: 745 RAAFKKKYPQLEHDA---IIKITGDADKDARKVQTMITRFNKER-LPNIVVTVDLLTTGV 800 + P++ + I++ITGD ++ I N E P I T L++TG Sbjct: 449 ---LRYAAPEITGKSDTYIVRITGDDPVAKGYLEDFI---NPEAPFPVIATTSKLMSTGT 502 Query: 801 DIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIY--STLESVDTMR 858 D P++ + VR R + + A R+ + +D Y + +E+++ M+ Sbjct: 503 DTPALTRKERVENVRKRNYWAKYGENARRVLNAL----------LDKYAETGIENIEEMQ 552 Query: 859 PVVVRPKVELQT 870 + + P L T Sbjct: 553 VLTIEPLKNLGT 564 >UniRef50_B5H9V0 Type III restriction enzyme n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H9V0_STRPR Length = 790 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 135/487 (27%), Positives = 199/487 (40%), Gaps = 124/487 (25%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR Q +++A+EK++ G Q L+ MATG GKT T + +RL++ +R+LFLVDR Sbjct: 8 LRSAQYKSIKALEKSLAGGNQRALIQMATGAGKTYTVVQSSYRLLRHAGARRVLFLVDRN 67 Query: 505 SLGEQALGAFEDTRING--DTFNSIFDIKGLTDKFPEDSTKIHVATVQSL------VKRT 556 +LG+QA + D G + ++ + DS KI ++T+Q L + Sbjct: 68 NLGKQAYNEYRDFVPLGARTPLHEQMPLRLFSKGAVADSDKIVISTIQRLWCKLSGIPVP 127 Query: 557 LQSDEPMPVAR---------------------YDCIVVDEAHRGYILDKEQTEGELQFRS 595 DE R +D IVVDE HR Sbjct: 128 ADDDESFETERADRLAGSVASVGYCPDLPPDFFDVIVVDECHRSIY-------------- 173 Query: 596 QLDYVSAYRRILDHFDAVKIALTATPALHTVQIF-GEPVYRYTYRTAVIDGFLIDQDPPI 654 +R +L++FDA I LTATP T F V +YTY AV D +D D Sbjct: 174 -----GRWRPVLEYFDAHVIGLTATPIHQTFAFFDNNLVSQYTYEQAVADSVNVDYD-IY 227 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGEV--IND---------------TLEDDQDFEVAD 697 +I TR ++G + + P G V +N ++E D + + Sbjct: 228 KIGTRITEQGSVIPALST--EVLPDGTVQQVNSVIAKVHKLTRAEHWQSVEADDPYARTE 285 Query: 698 FNR--------GLVIPAFNRAVCNELTNYLDPTGSQ------------KTLVFCVTNAHA 737 N+ L++ F N T PT Q KTL F + HA Sbjct: 286 VNQRVRSTDQIRLIVETFRD---NLFTEIFPPTVDQETGEVQSREIVPKTLFFAQNDLHA 342 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITR-------FNKERLPNIV 790 D +VE +R AF G D RK+ + +R F +R I Sbjct: 343 DAIVEAVRTAFG---------------GAGDGFCRKITSQASRPDKALSDFRNKRDLRIA 387 Query: 791 VTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE----------VNKTSFK 840 VTVD++ TG DIP++ +VF+R +++ +EQMKGR R + V+K F Sbjct: 388 VTVDMIATGTDIPALECLVFMRDIQTWSYFEQMKGRGARTVKDLDLVKVTADAVHKDRFV 447 Query: 841 IFDCVDI 847 I D V + Sbjct: 448 IVDAVGV 454 >UniRef50_B5GJX6 Type I site-specific deoxyribonuclease protein R n=1 Tax=Streptomyces sp. SPB74 RepID=B5GJX6_9ACTO Length = 1052 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 192/790 (24%), Positives = 324/790 (41%), Gaps = 181/790 (22%) Query: 104 AQMCLRLGFRLAVWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQ 163 A+ C++ F W+ R +D P + P E + + + L R A Sbjct: 2 AETCVKELFHCLYWFARTCARD-----PAALPPAALEF----DTGIVPRPLSPHAR--AL 50 Query: 164 TQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQAR-LAALEAQLAEKNAELAKQTEQER 222 QAE++A++ + ET + QAR LAA AQ +AEL ++ E+ R Sbjct: 51 KQAELKAKE---------------AEDETRFREQARQLAAERAQ----SAELTRRLEELR 91 Query: 223 KAYHKEITDQA-IKRTLNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKA 280 + T + E+ +R D L++AGW + PG + Sbjct: 92 AGIAAAKAANQAVGDTHDYDEKTTRDAFTDLLLKEAGWDLTT------------PGRD-- 137 Query: 281 IAEWP--TGKDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNG 337 E+P +G +G+ DYVL+ +P+A+VEAKR D ++ Y+ + Sbjct: 138 -TEYPIASGMPAKSGKGYVDYVLWGDDGRPLALVEAKRTRRDAREGQQQAKLYADALEAR 196 Query: 338 FLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWY 397 F R P + TNG E T G+ Y Sbjct: 197 FNRR---------------------------------PVIFCTNGYE---TYLWDDGLGY 220 Query: 398 --RDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRA 455 R VR + L WH + L + ++ A P YQ A++ Sbjct: 221 PPRQVRGFFTKDQLL--WH-IRQRAGRLSLASTRIDRKIAGRP---------YQLRAIQR 268 Query: 456 VEKAIVKGQ-QEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAF 514 V + + + ++ LL MATGTGKTRT +A++ +L+++ +R+LFL DR++L QA+ AF Sbjct: 269 VGETFEQDRSRQALLVMATGTGKTRTTVALVDQLMKAGWARRVLFLADRQALVTQAMKAF 328 Query: 515 EDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKR--TLQSD--EPMPVARYDC 570 ++ N S+ D K T +++++T Q+++++ + D +D Sbjct: 329 KENLPN-TPVASLLDDKTAT-------ARVYLSTYQTMLRQIDVIDGDGRRRYGPGHFDL 380 Query: 571 IVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTV 626 +V+DEAHR + Y + +FD++ + LTATP +T Sbjct: 381 LVIDEAHRSVY-------------------AKYGELFRYFDSLLLGLTATPKDEIDHNTY 421 Query: 627 QIF----GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEV 682 ++F G P Y A +G+L+ +++ R + G+ + +S + + Sbjct: 422 RLFALEDGVPTDSYGLDEAAGEGYLV-LPKAVKVPLRFMEHGIRYAD------LSEEEKA 474 Query: 683 INDTLEDDQDFEVADF--NRGLVIPAFNRAVCNELTNYLDPTGSQ--------KTLVFCV 732 D E +D E+ D + FN +++ L G + KT++F Sbjct: 475 EWDAKEWTEDGEIPDAVGRHDMNTYLFNEDTVDKMLQTLMTRGHRVEGGDRIGKTIIFAK 534 Query: 733 TNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRF----NKERLPN 788 +AHA + E A + + K T T++ F N R P+ Sbjct: 535 NHAHARYIEERYNANYPRDGGHTARVITYKET--------YAHTLLDAFADPRNPPRAPD 586 Query: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV----------NKTS 838 I ++VD+L TG+D+P + N+VF + V SR + QM GR TRL P + +K Sbjct: 587 IAISVDMLDTGIDVPEVVNLVFAKPVFSRTKFWQMIGRGTRLRPGLYGPGPDNPAHDKQD 646 Query: 839 FKIFD-CVDI 847 F +FD C +I Sbjct: 647 FFVFDFCGNI 656 >UniRef50_A0Q726 Type I restriction-modification system, subunit R (Restriction) n=25 Tax=Proteobacteria RepID=A0Q726_FRATN Length = 782 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 165/655 (25%), Positives = 265/655 (40%), Gaps = 166/655 (25%) Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKT--LRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 ++ SE +++ LI +L+ +GW + T F+ G + G G + Sbjct: 1 MSYSEADTKAKLITPKLKNSGWDERNITREYYFTDGRKQAGGAR-------------GEK 47 Query: 295 GFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 F DY+L +A+VEAK+ I+ L ++ Y+K + Sbjct: 48 KFVDYLLHYQGINLAIVEAKKEGINYKQGLQQAIDYAKALN------------------- 88 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGR---EYRATMKTKSGIWYRDVRDTRNMSKALP 411 + + YSTNG EY + S+ + Sbjct: 89 -------------------VDYVYSTNGHNILEYHIST---------------GQSQDID 114 Query: 412 EWHRPEELLEMLGSEPQKQNQ------WFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQ 465 ++ P EL E K Q +F+D RYYQ+ AV+ AI GQ Sbjct: 115 DFPTPRELFERKYPNINKVRQNVVTQEFFSDGTKTP----RYYQKIAVQKTIDAISSGQD 170 Query: 466 EILLAMATGTGKTRTAIAMMFRLIQSQRFK--------RILFLVDRRSLGEQALGAF--- 514 ILL +ATGTGKT A + +RL++++ K RIL+L DR L +QA+ F Sbjct: 171 RILLTLATGTGKTYIAFQIAYRLLEARWRKNDIGNKKPRILYLADRNILIDQAINEFNPI 230 Query: 515 --EDTRINGDTFNSIFDIKGLTDKFPEDST---KIHVATVQSLVKRTLQSD--------- 560 + RI G IK K P I+ A ++ ++ L +D Sbjct: 231 ENDCKRIQGKL------IKKNGGKVPLSGNVFFAIYQAVAENKNRQYLATDSEDDSLTAY 284 Query: 561 -EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALT 618 + P +D I++DE HRG D S++R I+++F AV + LT Sbjct: 285 YKQYPADFFDLIIIDECHRGSANDD----------------SSWRDIIEYFSSAVHLGLT 328 Query: 619 ATPAL----HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQI--ITRNAQEGVYLSKGEQ 672 ATP T FGEP+Y Y+ + + DGFL P ++ IT N E Y Sbjct: 329 ATPKRDVNGDTYDYFGEPIYEYSLKDGINDGFLT----PYKVKRITTNIDE--YRPNTHD 382 Query: 673 VERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCV 732 S G++ N + ++D+ + + + + + + ++ KT+VFC Sbjct: 383 ----SVDGDLPNKV------YSISDWEKTITSQQRHELIAKTILDNINKM--DKTIVFCK 430 Query: 733 TNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRF--NKERLPNIV 790 HA EL+ A + D +++T + + R + +F N + +P I+ Sbjct: 431 NQPHA----LELKLAIDRFKKVKTPDYCVRVTSEEGQIGRD---YLEQFQDNDKDIPVIL 483 Query: 791 VTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 + +LTTGVD ++ NIV + S I ++Q+ GR TR K F I D V Sbjct: 484 TSSKMLTTGVDAKNVRNIVLTAPIESMIEFKQIIGRGTRTFE--GKDFFTILDFV 536 >UniRef50_A5KNP7 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KNP7_9FIRM Length = 1130 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 220/888 (24%), Positives = 351/888 (39%), Gaps = 195/888 (21%) Query: 6 NFEFLKGVNDF-TYAIACA-AENNYPDDPNTTLIKMRMFGEATAKHL----GLLLNIPPC 59 NF FL+ ++ ++ AC AE P + + R E K + L I Sbjct: 4 NFAFLEKKQEYELFSGACIDAERILESSPVMSAVASRKALELCVKWIYSIDSALEPIGNR 63 Query: 60 ENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLND-AQMCLRLGFRLAVWY 118 E LL G + +D + + R GN++VH D A + L + F W Sbjct: 64 EGLQSLLHNNGFPSLMDITLWRRLQHIVRNGNESVHTSKRLTRDNAVLSLNILFDFVEWV 123 Query: 119 YRLVTKDYDFPVPVF---VLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKL 175 +DY VF +P+ ++ + Q+ +QV + Q A+ Sbjct: 124 DYCYGRDY--VERVFDEKKIPDATTDM------NVVQEEYRQVIKDVQKNAD-------- 167 Query: 176 VALNGYIAILEGKQQETEAQTQARLAALEAQL-AEKNAELAKQTEQERKAYHKEITDQAI 234 I+ K +E E RL AL +L E + A+ + Y ++++ Sbjct: 168 -------KIVNEKDKEIE-----RLLALNKELRNEMKVQKARNIKNREYVYEPDLSEWTT 215 Query: 235 KRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGN 293 ++ R+ IDA L G+ D R N E+P G Sbjct: 216 RK---------RY-IDADLEANGYVFDQDKKR-----------NCVEVEYPVVGMPNQTG 254 Query: 294 QGFADYVLFVGL-KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEV 352 +G+ DYV++ K IAVVEAK+ + N+ Y+ C Sbjct: 255 RGYVDYVIWGDTGKIIAVVEAKKASESGDKGRNQGKLYADCI------------------ 296 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 Q+ GK+ P + TNG E + +W R +S P+ Sbjct: 297 -----------QNMQGKR----PIIFYTNGFE--------TYLWDDANSAPRLVSGIFPQ 333 Query: 413 WHRPEELLEMLGSEPQKQ--NQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 +++ M+ K+ N D ++ R+YQ AV + KG ++ LL Sbjct: 334 ----KDINAMIERRCIKKSVNSIQID----KQITDRWYQLRAVTKCCENYEKGIRKCLLV 385 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDI 530 MATGTGKTRTA +++ + +S+ ++LFL DR+ L +QA AF N N + + Sbjct: 386 MATGTGKTRTAASIVDVMTRSELMGKVLFLADRKELVKQAKDAFYKYIENTTMCNLLLNK 445 Query: 531 KGLTDKFPEDSTKIHVATVQSLVK-----RTLQSDEPMPVARYDCIVVDEAHRGYILDKE 585 E + KI +T Q+++ + + IV+DEAHR I +K Sbjct: 446 D-------ERNAKIIFSTYQTMLHAIDTIKNADGSRFFSPGHFSLIVIDEAHRS-IFNK- 496 Query: 586 QTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP--ALH--TVQIF----GEPVYRYT 637 Y+ I +FDA + LTATP +H T F P Y Sbjct: 497 -----------------YKAIFQYFDACLLGLTATPKNTIHQSTYTFFDMKNNIPTDVYE 539 Query: 638 YRTAVIDGFLIDQDPPIQIITRNAQEGV----------------YLSKGEQVERISPQGE 681 Y AV ++ I+ T+ + +G+ ++ G E I P E Sbjct: 540 YEEAVEKDHVLVPFYLIETSTQISDDGITYADLDEEEREAYEAEFVEDGGVPEHIPP--E 597 Query: 682 VINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVV 741 IN + F V +R ++ N + ++ N++ KT++F HA +V Sbjct: 598 RINKYI-----FNVDTVDR-MISDLMNNGIRHKNGNHVG-----KTIIFAQNKLHAKFIV 646 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGV 800 + F + YPQ + + + D + ++ F K + P I VTVD+L TG+ Sbjct: 647 DR----FNELYPQYKGNFCKLVVCDEPYAGQNLKD----FKKADDYPFITVTVDMLETGI 698 Query: 801 DIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFD 843 D+P I N+VF +KV SRI +EQM GR TRLC + +K F +FD Sbjct: 699 DVPEITNLVFAKKVYSRIKFEQMLGRGTRLCENLFGEGEDKKEFVVFD 746 >UniRef50_C4WKW0 Type I restriction enzyme EcoEI R protein n=2 Tax=Proteobacteria RepID=C4WKW0_9RHIZ Length = 847 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 149/550 (27%), Positives = 213/550 (38%), Gaps = 134/550 (24%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQE A++ ++K+ KG L MATGTGKT T+ A++ ++++ KR+LFLVDR Sbjct: 189 LRPYQERAIQEIQKSAKKGATRFLFEMATGTGKTLTSAAVIKLFLKTRNAKRVLFLVDRL 248 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV-----KRTLQS 559 L QA AF+ N F SI + D D I V TVQSL+ +R Sbjct: 249 ELETQADKAFKAYLKN--DFTSIIYKEQRDDWRKAD---IVVTTVQSLLFNDKYRRLFSP 303 Query: 560 DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTA 619 + +D ++ DEAHR R + ++F K+ LTA Sbjct: 304 TD------FDLVISDEAHRS-------------------IGGNARAVFEYFIGYKLGLTA 338 Query: 620 TP------------------------ALHTVQIF----GEPVYRYTYRTAVIDGFLIDQD 651 TP L T + F G+P +RY+ V +GFLI+ Sbjct: 339 TPKDYLKQSKKDKPKERDPREAERRMMLDTYRTFGCESGDPTFRYSLLDGVREGFLIN-- 396 Query: 652 PPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQD----FEVADFNRGLVIPAF 707 P I R G + +S +G I T ED + F DF + A Sbjct: 397 -PYVIDART---------GVTTKLLSDEGFTIETTAEDGTENKEAFGGRDFEKRFFSEAT 446 Query: 708 NRAVCNEL--TNYLDPTGSQ--KTLVFCVTNAHADMVVEELRAAFKKKYPQL-EHDAIIK 762 NRA C L DP + K + F V+ HA + E L ++ +P + D ++ Sbjct: 447 NRAFCRALLENGLRDPISGEFGKAIAFAVSQNHALKITEILNELAEQLWPGCYQSDFAMQ 506 Query: 763 ITGDADKDARKVQTMITRFNKERL--------------PNIVVTVDLLTTGVDIPSICNI 808 +T D Q M F L + VTV ++TTG D P I N+ Sbjct: 507 VTSDIPAS----QQMTINFANNNLGGHTGFVENYRTSKARVCVTVGMMTTGYDCPDILNL 562 Query: 809 VFLRKVRSRILYEQMKGRATR---------------LCPEVNKTSFKIFDCVDIYSTLES 853 +R + S + QMKGR TR +V K S+++FD E Sbjct: 563 ALMRPIFSPSDFVQMKGRGTRKHNFAEELFDPARKAALGDVQKASYRLFDFFANCEFFEE 622 Query: 854 VDTMRPVVVRPKVELQTLVNEITDSET-------YKITEADGRSFAEHSHEQLVAKLQRI 906 + PK L N D Y+ E D Q+V +++ Sbjct: 623 KFDYDQALALPKPAAMPLSNGGDDGSAIASKPTIYEFLEPD----------QVVYQVEEQ 672 Query: 907 IGLATFNRDR 916 IGL DR Sbjct: 673 IGLEGMRIDR 682 >UniRef50_C2RWF5 Type III restriction protein res subunit n=1 Tax=Bacillus cereus BDRD-ST24 RepID=C2RWF5_BACCE Length = 788 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 131/450 (29%), Positives = 198/450 (44%), Gaps = 101/450 (22%) Query: 446 RYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRS 505 RYYQ D + + G++++L+ MATG GKTRT +A+ L+Q + K+ILF+VDRR Sbjct: 165 RYYQLDCINTIIDRFKTGKEKMLVHMATGLGKTRTTVALTKALLQHELAKKILFVVDRRM 224 Query: 506 LGEQALG--------AFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 L +QAL + RI F + IHV + SL + Sbjct: 225 LAKQALDDGFSLISRDYSAARIKTTNFRQ------------QKHASIHVIVIDSL-EMIF 271 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRR-ILDHFDAVKIA 616 S +P YD I+VDE HR +S R+ +LDHF K+ Sbjct: 272 SS---IPSNFYDLIIVDECHRS--------------------ISVNRKVVLDHFICPKLG 308 Query: 617 LTATP-----------------ALHTVQIF----GEPVYRYTYRTAVIDGFLIDQDPPIQ 655 LTATP L T ++F GEP Y++ + +GFL D ++ Sbjct: 309 LTATPRTAVAKEGANVSEEDLAILDTYKLFGCEDGEPDYKFDLERGIEEGFLAPYD-VLE 367 Query: 656 I---ITRNAQ-EGV---YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 I +T+ A+ EG+ Y+ E ERI L ++ ++ R + Sbjct: 368 IKTYLTKEAEDEGIPIEYVLNPETRERID---------LPKEKRLKLKQLERKYLSEERC 418 Query: 709 RAVCNEL---TNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEH--DAIIKI 763 + E+ T Y +K ++F V+ H + E L F + +A+I Sbjct: 419 MRIAEEIKANTQY-----GEKVILFGVSQPHCLYLTEALNKVFNDNGSDNVNYAEAVI-- 471 Query: 764 TGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 +D +A + + +F K + P IVV+VD+++TGVD+P + I F S Y Q Sbjct: 472 ---SDNEAMN-EFIKNKFKKPNQKPYIVVSVDIMSTGVDVPCVRYISFASLTDSVGKYIQ 527 Query: 823 MKGRATRLCPE-VNKTSFKIFDCVDIYSTL 851 M GR +RL PE K SF+I D V + S L Sbjct: 528 MVGRGSRLDPEKSGKFSFRILDFVGLCSKL 557 >UniRef50_A3RQ88 Type I restriction-modification system restriction subunit n=4 Tax=Ralstonia solanacearum RepID=A3RQ88_RALSO Length = 951 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 154/605 (25%), Positives = 253/605 (41%), Gaps = 137/605 (22%) Query: 282 AEWP-TGKDETG----------NQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYR 329 A WP TG D+T +G+ DYVL+ KP+A+VEA+ + A + + Sbjct: 39 AGWPLTGPDDTAFPITGLPTPQGKGYVDYVLWGDHRKPLAIVEARHTRRNARAGRQRARQ 98 Query: 330 YSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATM 389 Y+ + +G++ P Y TNGR++ Sbjct: 99 YADGLEA-----------------------------MTGQR----PLIYCTNGRDH---- 121 Query: 390 KTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQ 449 W D D +A+ +HR +EL ++ E + + Q A + + R +Q Sbjct: 122 ------WLWD--DRTCPPRAVRGFHRKDELERLI--ERRMRRQPLATAAIDTAIAERPHQ 171 Query: 450 EDAVRAVEKAIVKGQ-QEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 A+R + +A + + + L++M +GTGKTRTA+A+ L++ KR LFL DR + + Sbjct: 172 HRAIRRIAEAFEQDRLRGALVSMPSGTGKTRTAVALADLLMRCHWIKRTLFLTDRAAQLQ 231 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP--MPVA 566 +A A T + G T + D PE ++++T + + D+ Sbjct: 232 RAA-AAFATHLPGATLVDL-----AKDAAPEGD--VYLSTCPTALGWLDGIDDAPRFGPG 283 Query: 567 RYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA---- 622 +D ++VD AHRG YR I +FDA+ + LTATP Sbjct: 284 HFDLVIVDVAHRGI-------------------CQQYRAIFSYFDALLVGLTATPKEAID 324 Query: 623 LHTVQIFGE----PVYRYTYRTAVIDGFLIDQDPP--IQIITRNAQEGVY---LSKGEQV 673 + +FG P Y A+ D L+ PP + + R +E + LS E+ Sbjct: 325 RNMCDVFGLAAGLPTEAYDLDEAIADHHLV---PPRTVSVPVRLQREAIRYDDLSDTEKD 381 Query: 674 ERISPQGEVINDTLE-DDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ------- 725 +R DTLE DD + + + AV + ++ G + Sbjct: 382 QR---------DTLEWDDGNADASAPEAADAWLHHQDAVDEMIALVMEARGHRVAGGDWI 432 Query: 726 -KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFN-K 783 KTL+F + HA + E F YPQ + + IT +A + Q ++ F+ Sbjct: 433 GKTLIFARNHGHARFIAER----FDANYPQYKGELACVIT----YEAGQTQALVDAFSVA 484 Query: 784 ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC-----PEVNKTS 838 +R+P I ++ LL G+ +P + N+VF R+VRSR + +M G TR C P +K Sbjct: 485 DRMPRIAISAGLLDIGIAVPEVVNLVFFRRVRSRTRFWRMVGCGTRPCQDLYGPGQDKQD 544 Query: 839 FKIFD 843 +FD Sbjct: 545 VLVFD 549 >UniRef50_B3EE95 Type III restriction protein res subunit n=4 Tax=Bacteria RepID=B3EE95_CHLL2 Length = 846 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 178/698 (25%), Positives = 271/698 (38%), Gaps = 186/698 (26%) Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARP-----EPGVNKAIAEWPT-GKD-ETGNQ 294 E +R I+ L AGW+ F +G P EPGV E G + E + Sbjct: 5 EATARIKINKLLEAAGWRF------FQEGKAPANVCLEPGVTIKSTELDAFGTNFEQSTK 58 Query: 295 GFADYVLFVGLK-PIAVVEAKRNNIDVPARLNESYRYSKC-------FDNGFLRETL-LE 345 GF D++L P+ V+EAK N + ++ +Y++ NG L LE Sbjct: 59 GFVDFLLLDAKGFPLLVLEAKAENRNPLVGKEQARKYARSQNCRFVILSNGNLHFFWDLE 118 Query: 346 HYSPDEVHE-AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTR 404 SP + P+ T +Q S Sbjct: 119 RGSPYVITSFPTPDSVTGYQKVSPN----------------------------------- 143 Query: 405 NMSKALPEWHRPEELLE--------MLGSEPQKQNQ--WF--ADNPGMSELG----LRYY 448 P+ L+E +L P Q++ W A+ PG + LR Y Sbjct: 144 -----------PQRLIEEPISEDYIVLTQHPNYQSEAGWRNEAERPGYIQTNKLRFLRQY 192 Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q A+R ++ A+ G+ L MATGTGKT TA A++ ++S +R+LFLVDR L Sbjct: 193 QLKAIRTLQAAVGDGKDRFLFEMATGTGKTLTAAAVIKLFLRSGNVRRVLFLVDRLELEG 252 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY 568 QA AF T ++ D F ++ + D +I V TVQS++ P + Sbjct: 253 QAKKAFA-TVLSSD-FQTVIYKENRDD---WRRAEIVVTTVQSMLFNNKYQKLFSPTD-F 306 Query: 569 DCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP------- 621 D ++ DEAHR + R + D+F K+ LTATP Sbjct: 307 DLVISDEAHRSIGGNA-------------------RAVFDYFIGYKLGLTATPRDYLRRF 347 Query: 622 -----------------ALHTVQIFG----EPVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 L T + FG +P +RY+ V +GFLI+ P + R Sbjct: 348 DSSNPGTRDPREAERRLLLDTYRTFGCENSQPTFRYSLLDGVKEGFLIN---PTVVDART 404 Query: 661 AQEGVYLSKGEQVERISPQGEVI---NDTLEDDQD-FEVADFNRGLVIPAFNRAVCNE-L 715 LS+ +G V+ +DT ED Q F+ +F + N +C L Sbjct: 405 EITTTLLSE---------EGFVVSFTDDTGEDQQQTFKQREFEKRFFADTTNHLLCKTFL 455 Query: 716 TNYL-DPTGSQ--KTLVFCVTNAHADMVVEELRAAFKKKYP-QLEHDAIIKITGDADKDA 771 N + DP + K+++F V+ HA +V+ L + +P + + D +++T DA Sbjct: 456 ENAMRDPVSGEIGKSIIFAVSQNHAAKLVQILNQMADRMFPNKYQSDFAVQVTSQI-PDA 514 Query: 772 RKVQTMITRFN-----------KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 ++ N K I VTV ++TTG D I NI R + S + Sbjct: 515 QQFTINFANNNLLGSGNFIPTYKTSKARICVTVGMMTTGYDCTDILNIGLFRPIFSPTDF 574 Query: 821 EQMKGRATR---------------LCPEVNKTSFKIFD 843 Q+KGR TR + + KT+FK+FD Sbjct: 575 IQIKGRGTRKHDFRELLFNDTIKDVVLQPIKTAFKLFD 612 >UniRef50_C9LYN5 Type I restriction-modification system R subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LYN5_9FIRM Length = 742 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 109/429 (25%), Positives = 180/429 (41%), Gaps = 72/429 (16%) Query: 446 RYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRS 505 R YQ++AV + + + +G + +L++ GTGKTR A + L+ + ++L+L DR Sbjct: 343 RPYQQEAVWRICEDVHRGVRRLLVSTPPGTGKTRMAAGAIEALLHQKAVSKVLYLADREE 402 Query: 506 LGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV-----KRTLQSD 560 L QA F + + + D++ E I AT ++ RT Sbjct: 403 LVHQAYEQFRMLLPDAKLVDLLGDVR------EEAQADIVFATATIMMDAVNESRTETGA 456 Query: 561 EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTAT 620 A +D +++DE+H D + IL++FDA+ + ++ Sbjct: 457 RLYDPAHFDLVIIDESHPSIYDD-------------------HLVILNYFDAILLGFSSL 497 Query: 621 P--ALHTVQIF-------GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGE 671 P A +++ G+P + Y+ A+ DG+L+D + A EGV + Sbjct: 498 PPTAPGEAEVYRFYDLAPGKPTFAYSLAEALRDGWLVDF-----TLRDEAPEGVMEPRLL 552 Query: 672 QVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE------LTNYLD----- 720 + Q + D DF+ +PA N + +E L N L Sbjct: 553 YADLTEEQRTIAEMEYSDTGAIASKDFD----VPAVNNWLFSEETIQAMLENLLQHGLKT 608 Query: 721 PTGS-QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMIT 779 P G KT++F + A + F++ +P+ D I + A VQ Sbjct: 609 PDGKLGKTIIFAKNSLQAKAIA----FIFQRLHPEYGADFIRALDARTPDLAEAVQAF-- 662 Query: 780 RFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN---- 835 + E+L I V+VD+L TG DIPS+ N+VF RKV S + QM GR R C ++N Sbjct: 663 SLSDEQL-TIAVSVDVLDTGFDIPSVENLVFFRKVHSLSKFSQMLGRGMRFCADLNGAGK 721 Query: 836 -KTSFKIFD 843 K F + D Sbjct: 722 DKEKFLVMD 730 >UniRef50_C2CPV5 Restriction modification enzyme r subunit protein (Fragment) n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CPV5_CORST Length = 598 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 107/409 (26%), Positives = 178/409 (43%), Gaps = 72/409 (17%) Query: 363 WQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVR-------DTRNMSKALPEWHR 415 + + G++ ++P + TNG + R W RD + R + + P Sbjct: 205 YAEALGRKFGRVPLVFYTNGHDVR--------FWDRDAELPGGYCYEARQVEE-YPTAAA 255 Query: 416 PEELLEMLGS-EPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 EEL+ G +P + + +S++ R YQ+ +RAV + G + LL MATG Sbjct: 256 MEELIRRRGKRQPLETTE-------LSDIAARPYQQQMLRAVSERFAAGHRRALLVMATG 308 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLT 534 TGKTR +I+++ L+++ + +LFL DR++L QA AF + + N + + Sbjct: 309 TGKTRVSISLVKMLMEAGWVRNVLFLADRKALARQAHSAFVEHLPGSNPVNLLAN----- 363 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 E + +++V+T +++ + E +D IVVDEAHR Sbjct: 364 ---KEATGQVYVSTYNTMID-MVGPTERFGSFDFDLIVVDEAHR---------------- 403 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPAL----HTVQIF----GEPVYRYTYRTAVIDGF 646 YRR+ ++FDA + LTATP +T + F G P Y A+ DG+ Sbjct: 404 ---SIYQRYRRLFEYFDAAVVGLTATPRSNVDHNTYRFFGCEPGAPTGYYGLDKAIEDGY 460 Query: 647 LIDQDPPI----QIITRNAQEGVYLSKGEQVE-RISPQG-EVINDTLEDDQDFEVADFNR 700 L+ P + + R + LS EQ+E + G + D LE + A+ NR Sbjct: 461 LV--APKLFRGDSLFMRQGVKYSELSSEEQLEWDMKDWGSDESGDPLEAPGEITSAEMNR 518 Query: 701 GLVIPAFNRAVCNELTNYLDPTGSQ----KTLVFCVTNAHADMVVEELR 745 L R V ++ G KT++F T HA+++ E R Sbjct: 519 VLYNLDTIRQVLAQVIERGIKVGGADRLGKTIIFARTQRHAELIAEVFR 567 >UniRef50_B2AZI6 Predicted CDS Pa_3_4550 n=6 Tax=Leotiomyceta RepID=B2AZI6_PODAN Length = 678 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 104/405 (25%), Positives = 161/405 (39%), Gaps = 82/405 (20%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQ-SQRFKRILFLVDR 503 LR YQE+ ++AV +I +G + + +++ATG GKT ++ R+ + + R L L R Sbjct: 49 LRAYQEECIQAVLTSITQGHKRLGISLATGAGKTVIFTHLIDRVTPPNPQATRTLILAHR 108 Query: 504 RSLGEQAL----GAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK--RTL 557 R L EQA A+ + + + N G D I VA++QS++ R L Sbjct: 109 RELVEQAARHCQSAYPNKTVEVELGN--LQATGFAD--------ITVASMQSILSKDRLL 158 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD------ 611 + D + Y ++VDEAH +I+ Y +IL+H + Sbjct: 159 KFDP----SNYKLVLVDEAH--HIV-----------------APGYLKILEHMNLRQKQP 195 Query: 612 ------AVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGV 665 V + + L E VY Y + D +L +++ + Sbjct: 196 DSPTLVGVSATFSRSDGLKLGAAIDEIVYHKDYIDMIADKWLS------EVVFTTVESRA 249 Query: 666 YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ 725 LS G + + GE FE A +R + P N V P Q Sbjct: 250 DLS-GVRAKGAGGTGE-----------FETASLSRAVNSPELNDIVVRAWFAKAAPPKRQ 297 Query: 726 KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKER 785 TLVFCV +H + E R H I D A++ + +F K+ Sbjct: 298 STLVFCVDLSHVAALTERFR-----------HHGIDARYVFGDTPAKERAETLEKFKKKE 346 Query: 786 LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL 830 P +++ + T G DIP+I +V R RSR L QM GR RL Sbjct: 347 FP-VLLNCGVFTEGTDIPNIDCVVLARPTRSRNLLIQMIGRGMRL 390 >UniRef50_C9M6T4 DNA/RNA helicase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6T4_9BACT Length = 551 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 110/409 (26%), Positives = 171/409 (41%), Gaps = 82/409 (20%) Query: 445 LRYYQEDAVRAVEKAIVKGQ-QEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDR 503 LR YQ+ AV A+E+ G ++ LL + TGTGKT + Q+ R+L L R Sbjct: 3 LRPYQQAAVTAIEEGWRDGSLRKSLLVLPTGTGKT---VVFCTVARQTTGDGRVLILAHR 59 Query: 504 RSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL--VKRTLQSDE 561 L EQA + RI G+ K F D + V +VQ+L VKR + Sbjct: 60 EELIEQAREKY--YRITGEIAAKE---KAHCSCFG-DPASVVVGSVQTLQNVKRLSK--- 110 Query: 562 PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI-ALTAT 620 P + I++DEAH + Y+R+L+HF ++ +TAT Sbjct: 111 -FPADYFSTIIIDEAHHALAV-------------------GYQRVLEHFPRARVLGVTAT 150 Query: 621 P----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERI 676 P + + F Y Y+ ++A+ DG+L PI+ +T + V Sbjct: 151 PDRGDKRNLAEYFDGVAYEYSLKSAIADGYLC----PIRALTAPLRLDV----------- 195 Query: 677 SPQGEVINDTLEDDQDFEVADFNRGL--VIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 V + DF+ A+ + L +P + + + ++KT+VF Sbjct: 196 ---SNVKTSRSKFGNDFDRAELSVALEEYLPQIAQCI-------KENASARKTVVFLPLV 245 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 + A E AA LE ++ G++D A + F+K +++ Sbjct: 246 SIAQQFQRECEAA------GLEAR---EVNGESDNRAE----TLAWFDKAGPGSVLCNAM 292 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 LLT G D PS+ +V LR + R LY QM GR TR+CP K + I D Sbjct: 293 LLTEGWDCPSVDCVVVLRPTKVRALYCQMIGRGTRICP--GKENLLILD 339 >UniRef50_C6HZP0 Type III restriction enzyme, res subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZP0_9BACT Length = 950 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 108/410 (26%), Positives = 165/410 (40%), Gaps = 94/410 (22%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q++ + ++ + G + L +ATG GKT A + F R+LFL RR + E Sbjct: 328 QDEVLLSLAELRADGARRALAILATGLGKTYLAA------FDCRGFSRVLFLAHRREILE 381 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY 568 QA F R++ + S+ +++ + S + A VQ+L + + + +P + Sbjct: 382 QARETF--FRVHPEKPASV-----VSEGEADVSGDLVFAQVQTLARPSRLLN--IPPETF 432 Query: 569 DCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATP-ALHTV 626 D IVVDE H +YRRILDHF + LTATP + Sbjct: 433 DYIVVDECHHAE-------------------APSYRRILDHFRPKFVLGLTATPYRMDNG 473 Query: 627 QIF----GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEV 682 IF G V R T+ + G L+ P Sbjct: 474 DIFALMDGHVVCRRTFIEGIRGGMLV----PFHYFG------------------------ 505 Query: 683 INDTLEDDQDFEVADFNRGLVIP-AFNRAVCNE------LTNYLDPTGSQKTLVFCVTNA 735 L+D D+E + G P A RA+ L + + GS KT+ FCV+ Sbjct: 506 ----LKDTVDYETIPWRGGRYDPEALERALTESRRAQETLRAFREHEGS-KTVAFCVSRL 560 Query: 736 HADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 HA ++ E + E A +TG+ R+ ++ +F + L +I+ VDL Sbjct: 561 HARLLAE---------FFSREGIAAGHLTGETPSGERR--EILRKFREGSL-SILFVVDL 608 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 L GVDIP I ++ LR S ++ Q GR RL P K I D + Sbjct: 609 LNEGVDIPEIDRVMLLRPTDSPTVFLQQIGRGLRLAP--GKGHLTILDFI 656 >UniRef50_A5UL17 Helicase n=3 Tax=Methanobrevibacter smithii RepID=A5UL17_METS3 Length = 956 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 99/393 (25%), Positives = 163/393 (41%), Gaps = 93/393 (23%) Query: 453 VRAVEKAIVKGQQEILLAMATGTGKTR-TAIAMMFRLIQSQRFKRILFLVDRRSLGEQAL 511 + ++ I G+ + LL ATGTGKT +A A +Q K+ LF+V R + +QA+ Sbjct: 224 MESLRSLIQSGESKALLVSATGTGKTYASAFA-----VQDFNPKKFLFVVHREQIAKQAI 278 Query: 512 GAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCI 571 A+++ F + D LT + + +T+Q+L K + + +D I Sbjct: 279 NAYKNV------FKNTKDFGLLTGNSKDYDSNFLFSTIQTLSKDDVYT--KFKKDEFDYI 330 Query: 572 VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQIFG 630 V+DE H+ +Y++I+D+F+ + +TA+P Sbjct: 331 VIDEVHKAG-------------------AYSYQKIMDYFEPEFCLGMTASPE-------- 363 Query: 631 EPVYRYTYRTAVIDGF-LIDQDPPIQIITRNAQEGVYLSKGEQ--VERISPQGEVINDTL 687 R ID + L D + +I ++A E L + + GE ++D+ Sbjct: 364 --------RPDGIDIYELFDHNLACEIRLKDALEEDLLCPFHYFGISDLEIDGETVDDST 415 Query: 688 EDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ--------KTLVFCVTNAHADM 739 E FN+ V ++ NYL + K LVFC A+ Sbjct: 416 E------------------FNQLVSDDRVNYLLEKSAYYGYSGERIKALVFCSRKKEAN- 456 Query: 740 VVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPN---IVVTVDLL 796 EL AF K+ H AI+ +TGD + R + I R + N + TVD+ Sbjct: 457 ---ELSKAFNKR----GHPAIV-LTGDDSQQTR--EDAIYRLTNDEAKNKLEYIFTVDIF 506 Query: 797 TTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 GVDIP I ++ +R +S I++ Q GR R Sbjct: 507 NEGVDIPEINQVLLVRPTQSPIIFIQQLGRGLR 539 >UniRef50_D2MPK0 DEAD/DEAH box helicase n=2 Tax=Firmicutes RepID=D2MPK0_9FIRM Length = 528 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 105/408 (25%), Positives = 159/408 (38%), Gaps = 105/408 (25%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQ--RFKRILFLVD 502 LR YQE+A RA+EK G + LL + TG GKT + ++I+ Q KR+L + Sbjct: 3 LRPYQEEARRAIEKEWASGVKNTLLVLPTGCGKT----VVFSKVIEDQVKEGKRVLVMAH 58 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDS----TKIHVATVQSLVKRTLQ 558 R L +QA D + + + +K + ++ V +VQSL++ Sbjct: 59 RGELLDQAT----------DKLHKMTGLTCAIEKADQSCLGTWNRVVVGSVQSLMR---- 104 Query: 559 SDEPMPVAR-----YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV 613 P +A+ +D I+VDEAH Y R+L+HFD Sbjct: 105 ---PSRLAKFNKDYFDAIIVDEAHHA-------------------VSDTYTRVLEHFDQA 142 Query: 614 KI-ALTATPALHTVQ----IFGEPVYRYTYRTAVIDGFLID---QDPPIQIITRNAQEGV 665 + +TATP ++ +F Y Y+ A+ +G+L Q P++I N Sbjct: 143 NVLGVTATPERSDMRKLGSLFQSLAYEYSIVQAIKEGYLCKIKAQTVPLKIDMNNVS--- 199 Query: 666 YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ 725 V DF+ NE+ LDP Q Sbjct: 200 ---------------------------VTVGDFS------------ANEIGTALDPYLEQ 220 Query: 726 -KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKE 784 T + V +V L A +K L + + + D R + ++ FN Sbjct: 221 IATEMETVCKDRKTVVFLPLIATSQKFKNILINHGFKAAEVNGNSDDR--EQILKDFNDN 278 Query: 785 RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 + N++ LLT G D P + IV LR + R LY QM GR TRL P Sbjct: 279 KY-NVICNSMLLTEGWDCPDVDCIVVLRPTKVRSLYCQMVGRGTRLSP 325 >UniRef50_A5DU02 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DU02_LODEL Length = 760 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 109/438 (24%), Positives = 182/438 (41%), Gaps = 94/438 (21%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLI----------QSQRF 494 LR YQ A+ A++ A+ +G + + +ATG GKT ++ L+ QSQ Sbjct: 132 LRDYQVQAIEAIKLALDQGIRRPAVVVATGGGKTVIFSNLIRELLDMLRTETTKSQSQN- 190 Query: 495 KRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK 554 KRIL L L +QA+ + IN + N +++ K D+ + VA+V S+ Sbjct: 191 KRILVLAHTEELIKQAVQKIKA--INPE-LNVRIEMRSARSK---DTDDVVVASVMSI-- 242 Query: 555 RTLQSDEPMPVARYD-----CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDH 609 P +AR+D I++DE H + Y++IL+H Sbjct: 243 -----KHPRRLARFDPAHFTSIIIDECHHAP-------------------AATYQKILNH 278 Query: 610 FDAVKIALTATPALHTVQI----FGEPVYRYTYRT-AVIDGFLIDQDPPIQIITRNAQEG 664 F A+ LH + + F + R+ R+ VI ++ Q + +I Sbjct: 279 FGAL---------LHDLHLSVIGFTATLSRFDKRSLGVIFDKVVFQRSLLTMI------- 322 Query: 665 VYLSKGEQVERISPQGEVINDTLED----DQDFEVADFNRGLVIPAFNRAVCNELTNYLD 720 GE V+ + + V N LE D++ + + FN ++ Sbjct: 323 ---EAGELVKPVIHRPLVANLNLESVKRQGSDYDTENLYNAMSAVGFNDKAVLSYMRLVE 379 Query: 721 PTGSQKTLVFCVTNAHADMVVEELRA-AFKKKYPQLEHDAIIKITGDADKDARKVQTMIT 779 T + TL+FCV H + L++ +Y +TG+ K R ++ Sbjct: 380 QTACKSTLIFCVNVQHCWELCSTLQSHGINAQY----------VTGETSKSER--AAIVE 427 Query: 780 RFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSF 839 F ++P ++ V++ T G DIP+I +I+ R SR L Q GR RL NKT Sbjct: 428 DFKLGKIP-VLCNVEVFTEGTDIPNIDSIILARPTLSRTLVTQSIGRGLRL--HKNKTCC 484 Query: 840 KIFDCVDIYSTLESVDTM 857 + D VD +T+E +D + Sbjct: 485 HVVDLVD--NTIEGIDVL 500 >UniRef50_B1YI12 Type III restriction protein res subunit n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YI12_EXIS2 Length = 774 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 100/412 (24%), Positives = 175/412 (42%), Gaps = 82/412 (19%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 QE+A+RA+ + + +G+ L +ATG GK T ++ F ++ FKRILFL +R L E Sbjct: 199 QEEALRALRETMEEGRTRALTVLATGLGK--TYLSAFF----ARDFKRILFLAHQRELLE 252 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY 568 QA +F+ N + + F I +D+ ++ T + +VQ+L + + E + Sbjct: 253 QAERSFKKVESN---WQTAFYIG--SDRTNDEQTDVLFGSVQTLSQN--RHLERFAQDYF 305 Query: 569 DCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATP-ALHTV 626 D I++DE H +Y+++L HF+ + LTATP + Sbjct: 306 DLIIIDEFHHA-------------------AAKSYQKVLAHFEPRFLLGLTATPDRMDGA 346 Query: 627 QIFG----EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVY-LSKGEQVERISPQGE 681 ++ ++ + +A+ +GFL T G++ + Q+ R+ + Sbjct: 347 DVYALCDNNVAFQMHFTSAINEGFL----------TPFHYYGIHDVIDYSQLRRMGRK-- 394 Query: 682 VINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVV 741 D +E +Q +R V + KT+ FC + A+ + Sbjct: 395 --YDAMELEQ-------------AQIDRTVSENIYAAWSKHRQTKTIGFCSSIRQAEYLA 439 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVD 801 + R ++ H +I +TG ++Q ++ IV TVDL GVD Sbjct: 440 QTFR--------EMGHQ-VIALTGQTINRRERIQEF-----EQGTVEIVFTVDLFNEGVD 485 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLES 853 IP + ++F R S +Y Q GR RL E K+ I D + Y +E+ Sbjct: 486 IPKVDTLLFCRPTESIAIYTQQIGRGLRLANE--KSHCVIIDLIGNYKNVET 535 >UniRef50_P33919 Uncharacterized protein yejH n=254 Tax=Proteobacteria RepID=YEJH_ECOLI Length = 586 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 125/458 (27%), Positives = 197/458 (43%), Gaps = 64/458 (13%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ++AV A + + ++ + TG GK+ IA + RL + R+L L + Sbjct: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS-LVIAELARLARG----RVLVLAHVK 59 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L Q ++ + D F + GL K E K+ +VQS V R L + + Sbjct: 60 ELVAQNHAKYQALGLEADIFAA-----GLKRK--ESHGKVVFGSVQS-VARNLDAFQ--- 108 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH 624 + ++VDE HR I D E+++ + Q + L V+ + R+L LTATP Sbjct: 109 -GEFSLLIVDECHR--IGDDEESQYQ-QILTHLTKVNPHLRLL--------GLTATP--- 153 Query: 625 TVQIFGEPVYRYTYRTAV-IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVI 683 ++ +Y++ Y V D + +D ++ R + YL+ E+++ Q + Sbjct: 154 -FRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFS 212 Query: 684 NDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQK-TLVFCVTNAHADMVVE 742 + + F AD NR L R + ++ ++ ++K ++F T HA +V Sbjct: 213 RLQAQSNGLFSEADLNREL--KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVG 270 Query: 743 ELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDI 802 L A DA + ITGD R V +I F +R +V V +LTTG D Sbjct: 271 LLPA----------EDAAL-ITGDTPGAERDV--LIENFKAQRF-RYLVNVAVLTTGFDA 316 Query: 803 PSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVV 862 P + I LR S LY+Q+ GR RL P KT DC+ + D P V Sbjct: 317 PHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKT-----DCLILDYAGNPHDLYAPEVG 369 Query: 863 RPK-----VELQTLVNEITDSETY-KITEADGRSFAEH 894 PK V +Q + T+ T ADG + EH Sbjct: 370 TPKGKSDNVPVQVFCPACGFANTFWGKTTADG-TLIEH 406 >UniRef50_A3Z7D3 Putative ATP-dependent helicase n=3 Tax=Chroococcales RepID=A3Z7D3_9SYNE Length = 1052 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 104/423 (24%), Positives = 164/423 (38%), Gaps = 97/423 (22%) Query: 448 YQEDAVRAVE-KAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQ--SQRFKR-----ILF 499 YQ + + A+ + V + L+ ATGTGKT A + RL +RF +L Sbjct: 322 YQREMLEALAAERTVHDRWHNLVVAATGTGKTVLAAFDVARLHSDFPERFPAADPPPLLL 381 Query: 500 LVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS 559 + R+ + +QAL F + F ++ + + P + A+VQSL +R L Sbjct: 382 IAHRKEILQQALATFRQV-LRDPAFGELY----VDGELPRQWRHV-FASVQSLAQRDLAE 435 Query: 560 DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALT 618 +P R+ ++VDE H L +YRR LDH + + LT Sbjct: 436 ---IPADRFAVVIVDEFHHAAAL-------------------SYRRWLDHLRPQLLLGLT 473 Query: 619 ATP----ALHTVQIFGEPVY-RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQV 673 ATP L ++ FG + TA+ G L P Sbjct: 474 ATPERADGLDVLRWFGGRIAAELRLWTALDQGLLA----PFHYFA--------------- 514 Query: 674 ERISPQGEVINDTLEDDQDFEVADFNRGLVIPA---------FNRA--VCNELTNYLDPT 722 + D D ++ RG +PA R + +EL + Sbjct: 515 -------------VADATDLSSLEWRRGGYVPAELSTLYTGDHRRVALILSELEKAVAEP 561 Query: 723 GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFN 782 + L FCV+ HA + E RA L+ +A+ DA + + + + R + Sbjct: 562 RRMRALGFCVSVEHARFMAERFRAV------GLQAEAL-----DASTPSDERREALRRLH 610 Query: 783 KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIF 842 L I+ VDL G+DIPSI ++ LR S +++ Q GR RL PE K+ + Sbjct: 611 AGEL-QILFAVDLFNEGLDIPSIDTVLLLRPTESAVVFLQQLGRGLRLSPETGKSCLTVL 669 Query: 843 DCV 845 D + Sbjct: 670 DFI 672 >UniRef50_A4SC93 Type III restriction enzyme, res subunit n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SC93_PROVI Length = 556 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 104/401 (25%), Positives = 165/401 (41%), Gaps = 81/401 (20%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ AV AVE A GQ++ L MATG GK+ A ++ + + +L L Sbjct: 139 LRNYQVSAVEAVEGARAHGQRKALAIMATGLGKSMVANQVIANELDRNPCQEVLVLAHMS 198 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTD-KFPEDSTKIHVATVQSLVKRTLQSDEPM 563 L Q L A ++ T ++ TD + P S + AT QSL ++ D Sbjct: 199 DLVRQ-LEASSWQQLGKGTSTHLW-----TDGEQPAYSGGVVFATWQSLFS-AMRKDAGS 251 Query: 564 PVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIA-LTATPA 622 R+ +VVDEAH + + +L+H +A LTATP Sbjct: 252 LRERFGLVVVDEAHHAPSV-------------------GFTELLEHLSPNFLAGLTATPW 292 Query: 623 L---HTVQ-IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 ++Q +FGEPV+ + GFL D R +G+ E+V R S Sbjct: 293 RGDERSLQGLFGEPVFTLDIVAGMQMGFLAAVD------YRMLTDGI---NWEEVSRASS 343 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIP----AFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 QG VAD N LV+P +C+++ +P + L FC + Sbjct: 344 QG------------LTVADLNSHLVVPERDIGMVEVICDKMAGIKNP----RALAFCRSI 387 Query: 735 AHADMVVEELRAAFKKKYPQ--LEHDAIIKITGDADKDARKVQTMITRFNKERLPNI--V 790 HA E L+ F + + L H + + + + R+ +I + Sbjct: 388 EHA----ERLQPLFASRGVKTALLHSQLPR------------EQRFKNLSGFRMGHIDLL 431 Query: 791 VTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 +++++L G+DIP + + F+R SR ++ Q GR R+ Sbjct: 432 ISIEMLNEGIDIPEVNLVAFMRVTHSRRIFLQQLGRGLRIS 472 >UniRef50_Q6C2M8 YALI0F06534p n=1 Tax=Yarrowia lipolytica RepID=Q6C2M8_YARLI Length = 695 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 102/421 (24%), Positives = 166/421 (39%), Gaps = 79/421 (18%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ++ + A A+ G++ I +++ATG GKT ++ ++ ++L L R+ Sbjct: 29 LRKYQKECISACLDALNAGKRRIAVSLATGGGKTVIFANLLNQIAAKNTGNKVLILTHRK 88 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L QA +R N D I + + S + VA VQ+L + L+ +P Sbjct: 89 ELATQAQNQI--SRFNPDLKVEI----EMGTTVADPSADVVVAGVQTLQGKRLEQLDP-- 140 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-------IAL 617 + I++DEAH SQ +Y I+ HF A K I Sbjct: 141 -TDFKAIIIDEAHHAA--------------SQ-----SYLNIIQHFKASKAKSDVAVIGF 180 Query: 618 TA----TPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQV 673 TA T + F VY ++ + DG+L + + +S + Sbjct: 181 TATLFRTDTKSLTKAFDHVVYDLSFMDMINDGWL-----------SSVKFSTVISMADLT 229 Query: 674 E-RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCV 732 E I G DF+ + ++ + N V N G + T+VFCV Sbjct: 230 EVEIGAAG-----------DFKTSSLSKVVNTDRMNSLVFRTWQNMTAKHGYKSTIVFCV 278 Query: 733 TNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVT 792 H V +L F+ + E +TG R Q +I F +P ++ Sbjct: 279 DVQH----VRDLVELFRSQGINAE-----GVTGTTKPKTR--QAIIDEFKSGDIP-VLFN 326 Query: 793 VDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLE 852 + T G DIP+I ++ R +S+ L QM GR RL P + T+ VD+ T+ Sbjct: 327 CGVFTEGTDIPNIDLVILNRPTKSKGLMMQMIGRGLRLHPGKDHTA-----VVDLVGTVP 381 Query: 853 S 853 + Sbjct: 382 A 382 >UniRef50_B3CKZ8 Putative carboxylic ester hydrolase n=1 Tax=Propionibacterium freudenreichii subsp. shermanii RepID=B3CKZ8_PROFR Length = 1054 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 101/387 (26%), Positives = 156/387 (40%), Gaps = 74/387 (19%) Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFK-RILFLVDRRSLGEQALGAFEDTRINGDTFNS 526 L+ ATGTGKT A RL + +LF+ R+ + EQA + +N F Sbjct: 334 LVVAATGTGKTVLAALDYLRLCGDKPGSLSLLFVAHRKEILEQARSTYAHV-LNDANFGE 392 Query: 527 IFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQ 586 + + + P + + A+VQSL + L + +P +D +V+DE H Sbjct: 393 LL----VGGEHPTEHRHV-FASVQSLSRMNLDALDPTA---FDVMVIDEFHHAE------ 438 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKI-ALTATP----ALHTVQIFGEPVYRYTYRTA 641 + YRRILDHF ++ LTATP ++ FG+ + Sbjct: 439 -------------AATYRRILDHFQPRELLGLTATPERADGVNVASFFGDRIASELRLWD 485 Query: 642 VIDGFLIDQDPPIQIITR---NAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADF 698 +DG L+ P + GV S GE Q ++ D+ D Sbjct: 486 ALDGDLL---APFHYFVQWDDTDLRGVKASGGEY------QAGELSRLYTDN------DG 530 Query: 699 NRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 LV+ A + LDPT K L FCV+ HA + + L A Sbjct: 531 RSRLVLAAMRHRI-------LDPT-RMKALAFCVSVEHAHYMADVLSQAGVPS------- 575 Query: 759 AIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRI 818 + ++G + ++ R + I + RL + TVDL G+DIPSI ++ LR +S Sbjct: 576 --VALSGQSSREIR--EAAIRDLREGRLA-CLCTVDLFNEGIDIPSIDTVIMLRPTQSAT 630 Query: 819 LYEQMKGRATRLCPEVNKTSFKIFDCV 845 ++ Q GR R P K+ + D V Sbjct: 631 IFLQQLGRGLRRAP--GKSVLTVLDFV 655 >UniRef50_C0XQJ4 Possible helicase n=2 Tax=Corynebacterium RepID=C0XQJ4_9CORY Length = 943 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 104/411 (25%), Positives = 174/411 (42%), Gaps = 79/411 (19%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q +A+ +++ I G++ ++ ATGTGKT + A+ R I+ +R+LF+ R + Sbjct: 182 QTEALENLQRVIDAGERRAIIISATGTGKTILS-ALAVRQIKP---RRVLFVAHREQILN 237 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKR-TLQSDEPMPVAR 567 +A F+ T DI + + E + ++ AT+QSL + TL P + Sbjct: 238 KAAEEFQRVLACPPT-----DIGFIVGQRKEANQRLVFATIQSLGRGDTLSEISP---KQ 289 Query: 568 YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTV 626 +D ++VDE HR +Y+++L+HF A + LTATP Sbjct: 290 FDLVIVDEVHR-------------------SGAESYQKVLNHFRADFTLGLTATPE---- 326 Query: 627 QIFGEPVYRYTYRTAVIDGF----LIDQDPPIQIITRNAQEGVYLSKGEQV---ERISPQ 679 RT DGF L D + P +I +A E L + + S Sbjct: 327 ------------RT---DGFNVFELFDYNVPYEIRLEDALENHMLVPFDYYGVSDYESAF 371 Query: 680 GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADM 739 G VI+D Q L P + + +Y GS K L+FC +NA A Sbjct: 372 GSVISDNSTLQQ----------LAAPERVHHLAKIIQDYSFARGS-KGLIFCSSNAEAAA 420 Query: 740 VVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTG 799 + + L P I ++G + R + + + + + + ++TVD+ G Sbjct: 421 LSKGLNTESVHGRPL----RTIALSGGDSIETR--ENTVEKLAQGEI-DYILTVDIFNEG 473 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST 850 +DIP + +V LR +S I++ Q GR R K S ++ D + Y+T Sbjct: 474 IDIPPVNVVVMLRSTQSSIVFTQQLGRGLR--KYAGKRSLRVIDVIGNYAT 522 >UniRef50_B6H0F8 Pc12g06640 protein n=12 Tax=Leotiomyceta RepID=B6H0F8_PENCW Length = 645 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 109/437 (24%), Positives = 184/437 (42%), Gaps = 93/437 (21%) Query: 436 DNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLI-QSQRF 494 ++P + LR YQE+++++V K + +G + + +++ATG GKT ++ R+ + + Sbjct: 36 ESPVPPSIVLRNYQEESIQSVLKYLGEGHRRLGISLATGAGKTVIFTQLISRIPPRDTKA 95 Query: 495 KRILFLVDRRSLGEQALG----AFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQ 550 + + +V RR L EQA A+ D + + ++ G I +A+VQ Sbjct: 96 TKTMIIVHRRELVEQAAKHCSLAYPDKTVEIEMGKNVATGAG----------DIIIASVQ 145 Query: 551 SLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF 610 +L + + +P + + ++VDEAH +I+ K +YR L HF Sbjct: 146 TLARGRMYKFDP---SAFKLVLVDEAH--HIVAK-----------------SYREALGHF 183 Query: 611 D--------AVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ 662 V + ++AT + G + Y +D +I ++ + + Sbjct: 184 GLNEPSPNGPVLVGVSATFSRFDGLKLGAAIDHIVYHKDYVD--MIGENWLANAVFTTVK 241 Query: 663 EGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT--NYLD 720 G LSK V D+ DF G + A N N +T ++ Sbjct: 242 SGANLSK------------VKKDSF--------GDFALGSLSEAVNTTSTNNITVRAWMA 281 Query: 721 PTGSQK-TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK-ITGDADKDARKVQTMI 778 ++K TLVFCV HA L AAF+ +H + IT K R Q + Sbjct: 282 SAENRKSTLVFCVDIEHA----RRLTAAFR------DHGVDARYITASTPKGVRVEQ--L 329 Query: 779 TRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTS 838 F + P +++ L T G DIP+I ++ R RSR L QM GR RL P Sbjct: 330 RAFKDQEFP-VLLNCGLFTEGTDIPNIDCVLLARPTRSRNLLIQMIGRGLRLFPGKK--- 385 Query: 839 FKIFDC--VDIYSTLES 853 DC +D+ ++LE+ Sbjct: 386 ----DCHVIDMVASLET 398 >UniRef50_D1BPC6 Type III restriction protein res subunit n=2 Tax=Veillonella parvula RepID=D1BPC6_VEIPT Length = 967 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 119/450 (26%), Positives = 178/450 (39%), Gaps = 103/450 (22%) Query: 396 WY--RDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAV 453 WY R VR R + + E R +LL++ EP Q F N +EL +A Sbjct: 179 WYKPRWVRPERTSQRTVAEQFRKIDLLQL---EPNSMQQQFIAN--FNELR----ANNAK 229 Query: 454 RAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGA 513 R LL TGTGKT A M + R KRILFLV R + +QA+ + Sbjct: 230 RG------------LLISGTGTGKTYAAAFAM----REMRPKRILFLVHREQIAKQAIAS 273 Query: 514 FEDTRINGD---TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDC 570 FE RI D TF GL + HV + ++ R + P +DC Sbjct: 274 FE--RIYNDPSITF-------GLVSGNAKYYNATHVFSTMQMMGRNDVMKQYAP-KEFDC 323 Query: 571 IVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQIF 629 I++DE HR G +Y+RI+++F+ + +TA+P Sbjct: 324 IIIDEVHRA---------GS----------DSYQRIIEYFEPQFLLGMTASPE------- 357 Query: 630 GEPVYRYTYRTAVIDGF-LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLE 688 RT D + L D + +I + A E L ++ DT E Sbjct: 358 ---------RTDGYDLYELFDHNIIYEIRLQQALEEDLLCPFHYF----GISDLWVDTQE 404 Query: 689 DDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEEL--R 745 D D EV+ F+ ++ + E Y +GS+ K LVFC A + + R Sbjct: 405 DISDMEVS-FSNLSTKERVDKII--EKIRYFGHSGSRVKGLVFCSNRVEAKALSDAFNER 461 Query: 746 AAFK------KKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTG 799 ++ + + AI ++TG D R + + + TVD+ G Sbjct: 462 DVYRTVCLTGEDSQETREIAIARLTGTGDYQGRSDLQL----------DYIFTVDIFNEG 511 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATR 829 VDIP I ++ LR+ S I++ Q GR R Sbjct: 512 VDIPEINQVIMLRQTESPIIFIQQLGRGLR 541 >UniRef50_B0SD57 DNA or RNA helicase of superfamily II n=5 Tax=Bacteria RepID=B0SD57_LEPBA Length = 1046 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 109/418 (26%), Positives = 183/418 (43%), Gaps = 70/418 (16%) Query: 440 MSELGLRYYQEDAVRAVEKAIVK---GQQEILLAMATGTGKTRTAIAMMFR---LIQSQR 493 +EL R YQE R +E+ I + G + L+ ATGTGKT + A +R +I + + Sbjct: 311 FAELTPRVYQE---RILEELIAERRLGNNKNLIVAATGTGKTVIS-AFDYRRYSIINNSK 366 Query: 494 FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHV-ATVQSL 552 +L++ R+ + EQAL F + F S+F + G+ + F +H+ A++QS+ Sbjct: 367 -PSLLYIAHRKEILEQALSCFRMV-LQDQNFGSLF-VDGI-NPFSGTEAPLHIFASIQSI 422 Query: 553 VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA 612 + Q + + + ++ I++DE H S+YR I F Sbjct: 423 NSK--QIWKILGKSFFNFIIIDEVHHSS-------------------ASSYRSIFSEFTP 461 Query: 613 -VKIALTATPA-LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQI--ITRNAQEGVYLS 668 + + LTATP + I + YR T + + P IT N Q Sbjct: 462 EILLGLTATPERMDGESILPDFNYRITSEIRLPEALEERLLCPFHYFGITDNIQ-----L 516 Query: 669 KGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KT 727 KGEQ + G+ D +E + + D + +++ N+ P + K Sbjct: 517 KGEQFWK---NGKF--DLIELENVYTGDDITAKQRVNLIYKSI-----NHYQPNSEELKA 566 Query: 728 LVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLP 787 + FCV+ HA + E + +L DA I G+ D + R+ + I F ++++ Sbjct: 567 VGFCVSVKHAKFMAENFQ--------KLGIDAE-TILGETDSETRRQR--IIDFKQKKI- 614 Query: 788 NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 I+ TVD+ GVDIP I ++FLR S ++ Q GR R P NK + + D + Sbjct: 615 KILFTVDIFNEGVDIPEINTVLFLRPTESLTIFLQQLGRGLRHAP--NKDALTVLDFI 670 >UniRef50_B0CPP8 Predicted protein n=4 Tax=Agaricomycetes RepID=B0CPP8_LACBS Length = 635 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 109/432 (25%), Positives = 172/432 (39%), Gaps = 73/432 (16%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQ---RFKRILFLV 501 LR YQE + A +A+ G I +++ TG+GKT ++++ RL+ S R L +V Sbjct: 28 LRPYQEQCLDACLEALASGVSRIGVSLPTGSGKTTVFVSLLSRLVPSAWNPVATRSLIIV 87 Query: 502 DR----RSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 + R Q F + + + + G D + +AT Q TL Sbjct: 88 NSVELARQSASQVASLFPQWSVEIEQ-GAKYKASGFAD--------VTIATYQ-----TL 133 Query: 558 QSDEPMPVARYD-----CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA 612 +S E + A++D ++VDEAH +YR++L HF Sbjct: 134 KSAERL--AKFDPHKLKAVIVDEAHHAA-------------------APSYRKVLAHFHP 172 Query: 613 -VKIA--LTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLS 668 +K L A P+ H + I G + T+ DG + + R+ E + Sbjct: 173 DIKHPDPLFAAPSPPHRIPIVG---FSATFSRH--DGLALGSIFERIVYHRDFLEMIKEQ 227 Query: 669 KGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT--NYLDPTGSQK 726 V S + + D + DFN + N NEL ++D ++K Sbjct: 228 WLCPVRVTSVRASI--DLKSVTINTRTGDFNPTSLAHVINTETINELVVKTWIDRASTRK 285 Query: 727 -TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKER 785 TLVFCV AH + + R Q DA G + + + M F Sbjct: 286 STLVFCVNVAHVHTLTQSFR--------QFGVDARYLHAGTPIAERKALVAM---FKAGH 334 Query: 786 LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 P ++V +LT G DIP+I ++ R RSR ++ QM GR RL P +K I D V Sbjct: 335 FP-VLVNCAILTEGADIPNIDCVLIARPTRSRNVFAQMIGRGMRLSPNTDKGDCHIIDLV 393 Query: 846 DIYSTLESVDTM 857 S + V ++ Sbjct: 394 GSLSRMSGVVSI 405 >UniRef50_C6R8F6 Type III restriction enzyme, res subunit n=5 Tax=Corynebacterium RepID=C6R8F6_9CORY Length = 1040 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 103/407 (25%), Positives = 167/407 (41%), Gaps = 70/407 (17%) Query: 448 YQEDAVRAV-EKAIVKGQQEILLAMATGTGKTRTAIAMMFRLI--QSQRFKRILFLVDRR 504 YQE+ + A+ + VK + LL ATGTGKT A A+ +R + Q +R R+LF+ R+ Sbjct: 321 YQEEMLEALRSEREVKDRHRNLLVAATGTGKTVVA-ALDYRNLCEQWKRRPRLLFVAHRK 379 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 + +QA F++ + D F + L D A+VQSL LQ+ + Sbjct: 380 EILQQARRTFQEVLKDAD-FGEL-----LVDGAEPRRWDYVFASVQSLSASRLQN---LN 430 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI-ALTATPAL 623 +D +V+DE H Y+ +LDH ++ LTATP Sbjct: 431 SKHFDVVVIDEFHHAQ-------------------APTYKALLDHLQPQELLGLTATPER 471 Query: 624 HTVQIFGEPVYRY-TYRTA----VIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 GE V +Y YR A + D + P+ ++ G + ++ Sbjct: 472 GD----GENVQKYFDYRVAHELRLWDALRLQLLVPMHYYG--------IADGTDLSSLTW 519 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHAD 738 E + E+ +F + + R + NEL + K + FCVT AHA+ Sbjct: 520 SREKKDYNTEELSEFYIKAGEKR------TRFIVNELNRRIFDLSDMKAIGFCVTIAHAE 573 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 + Q +H I +D A + I + ++ +VD+ Sbjct: 574 YMAR-----------QFQHFGIPARAVTSDLTATERAQAIKDLENGDV-KVLFSVDIFNE 621 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 GVDIP++ ++ LR +S +++ Q GR RL P K S I D + Sbjct: 622 GVDIPAVNTLLLLRPTQSPVVFLQQLGRGLRLSP--GKDSCVILDFI 666 >UniRef50_Q5KCW6 DEAD box family helicase, putative n=1 Tax=Filobasidiella neoformans RepID=Q5KCW6_CRYNE Length = 706 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 115/467 (24%), Positives = 192/467 (41%), Gaps = 85/467 (18%) Query: 411 PEWHRPEELLEMLGSEPQKQNQWFADNPGMSE------LGLRYYQEDAVRAVEKAIVKGQ 464 P H +L S Q +Q +D+ G + + LR YQE A+ A A+ G Sbjct: 27 PPIHPARPYATILASS-QNLHQPPSDHAGPNNTTRNQNITLRSYQEAAISACLDALQSGS 85 Query: 465 QEILLAMATGTGKTRTAIAMMFRL-IQSQRFK---------RILFLVDRRSLGEQALGAF 514 + + ++ TG+GKT ++++ R+ + R + L +V+ L EQ + Sbjct: 86 RRLGVSSPTGSGKTTIFLSLIPRVPFYASRGNDSHPRDGKGQTLIIVNSVELAEQTQKSA 145 Query: 515 EDTRINGDTFNSIFD-----IKGLTDKFPEDSTKIHVATVQSLVKRT-LQSDEPMPVARY 568 E R+ GD + + GL D + +AT Q+L L +P +++ Sbjct: 146 E--RLLGDEWTIEIEQSKRVASGLAD--------VTIATYQTLNNPDRLSKFDP---SKF 192 Query: 569 DCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTA---TPALH 624 ++VDEAH +Y R+L +F+ VKI + +P LH Sbjct: 193 KLVIVDEAHH-------------------SAAPSYLRLLHYFNEDVKIPKSPQAPSPHLH 233 Query: 625 TVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG-EVI 683 ++ P+ ++ + D + + R+ ++ LS+ + ++P ++ Sbjct: 234 GFKV---PIIGFSATFSRADQHSLHSAFEEIVFHRDMKD--MLSE----KHLAPAKLTIV 284 Query: 684 NDTLE-DDQDFEVADFNRGLVIPAFNRAVCNELT--NYLDPTGSQK-TLVFCVTNAHADM 739 LE D+ + DF + N NEL YL ++ TLVFCV H Sbjct: 285 KADLELDEVETSSGDFKNAALARKVNTTEINELIVRTYLHRASERRSTLVFCVDLEHVSA 344 Query: 740 VVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTG 799 + + R+A ++ + + RK I F K P +++ ++LT G Sbjct: 345 LTQTFRSAGIDAR---------SVSSKSKPEMRKA--TIAAFGKGEFP-VLINCEVLTEG 392 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD 846 DIP I I+ R +SR L QM GR RL PE KT I D VD Sbjct: 393 TDIPQIDCILLARPTQSRNLLVQMVGRGLRLSPESGKTDCHIIDLVD 439 >UniRef50_C5DHE1 KLTH0E03630p n=2 Tax=Saccharomycetaceae RepID=C5DHE1_LACTC Length = 672 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 118/471 (25%), Positives = 198/471 (42%), Gaps = 65/471 (13%) Query: 441 SELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQ--SQRFKRIL 498 S L LR YQ + + ++I +G++ I +++ATG GKT ++ RL + + R L Sbjct: 29 SSLALRDYQHECIDRCLESISQGRRRIGVSLATGGGKTVIFSNLIDRLRRESGKSGYRTL 88 Query: 499 FLVDRRSLGEQALGAFEDTRINGDTFNSI-FDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 LV RR L +QA R+ F + F I+ K +S + VA+VQSL++R L Sbjct: 89 ILVHRRELAQQA------CRVLQAFFPGLNFQIEMGNYKCDINSADVVVASVQSLIRR-L 141 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIAL 617 + +P + D I++DEAH +Y RIL+HF A Sbjct: 142 ERYDPSCI---DLIIIDEAHHA-------------------AAKSYLRILEHFKA----- 174 Query: 618 TATPALHTVQIFGEPVYRYTYR--TAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVER 675 ++ V F R + +AVID + + I + EG + + ++ Sbjct: 175 NHKDSILPVVGFSATFERADNKALSAVIDEIVYHRGILEMIDDKWLCEGRFTTVSVSLD- 233 Query: 676 ISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNA 735 ++D DF + ++ + N+ V D + TL+F Sbjct: 234 -------LSDVAVTGSDFNIDGLSKVVNTKEVNKVVLQTYLQKRDLHKLRSTLLFGCDIK 286 Query: 736 HADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 H +E L + F K ++ +TG + R ++ F + R+ +++ + Sbjct: 287 H----IETLHSLFVKHGVNAQY-----VTGKTRQSER--DAIVEDFKRGRI-EVLMNCGV 334 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST-LESV 854 T G DIP++ +I+ R +SR L QM GR RL +K I D V + + S Sbjct: 335 FTEGTDIPNVDSILLCRPTKSRSLLVQMIGRGLRL--HHSKKHCHIIDFVGASTVGVVSF 392 Query: 855 DTMRPV-VVRPKVELQTL--VNEITDSETYKITEADGRSFAEHSHEQLVAK 902 T+ V V ++ TL + I D K EA+ + AE E L+ + Sbjct: 393 PTLAGVEAVSTGLDEATLQDLKAIKDEIVAKQLEAERKVLAEKEAESLLKR 443 >UniRef50_Q1QZA7 Type III restriction enzyme, res subunit n=5 Tax=Gammaproteobacteria RepID=Q1QZA7_CHRSD Length = 613 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 107/420 (25%), Positives = 169/420 (40%), Gaps = 79/420 (18%) Query: 440 MSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILF 499 MS LR YQ AV V +G ++ + TG+GK+ IA + RL + R+L Sbjct: 4 MSAPSLRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKS-LVIAELARLARG----RVLV 58 Query: 500 LVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS 559 L R L EQ + + D F++ GL K E ++ +VQS+V+ + Sbjct: 59 LAHVRELVEQNHAKYRAYGLEADLFSA-----GLGRK--ESERQVVFGSVQSVVRSLERF 111 Query: 560 DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK----- 614 + + +V+DE HR + + G+++ S+Y +++ H Sbjct: 112 EAHEAWGAFTLLVIDECHR---IPPGASAGKVRDDKG---ASSYHQVIAHLRRHNPRLKV 165 Query: 615 IALTATPAL----------HTVQIFGEP-------VYRYTYRTAVIDGFLIDQDPPIQII 657 + LTATP H + G+ V+ R V G+L PP Sbjct: 166 LGLTATPYRLGQGFIYHRHHHGMVRGDADCFFQDCVFEQPLRLMVKQGYLA---PP---- 218 Query: 658 TRNAQEGVYLSKGEQV----ERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCN 713 R +Y GEQ R+SP FE A+ NR + +RA Sbjct: 219 -RRVDAALYAEDGEQTRYDFSRLSPG---------RGGGFEEAELNR---VVQGHRATPG 265 Query: 714 ELTNYLDPTGSQK-TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDAR 772 + ++ ++ ++F T AHA ++ L P + I+ T R Sbjct: 266 IIAEVVEQARERRGVMIFAATVAHAREIMGYL--------PAQQAALIVGAT-----PGR 312 Query: 773 KVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 + + +I F +RL +V V +LTTG D P + I LR S LY+Q+ GR RL P Sbjct: 313 EREALIEDFKAQRL-KYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 371 >UniRef50_B8I140 Type III restriction protein res subunit n=16 Tax=root RepID=B8I140_CLOCE Length = 536 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 101/403 (25%), Positives = 164/403 (40%), Gaps = 99/403 (24%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK---RILFLV 501 LR YQ++A +AV KG + LL + TG GKT ++F I + + R+L L Sbjct: 3 LRPYQQEAKQAVLNEWGKGILKTLLVLVTGGGKT-----IVFSKITEECVRNGERVLILA 57 Query: 502 DRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDST----KIHVATVQSLV--KR 555 R L +QA D ++ T+K E ++ V +VQSL+ KR Sbjct: 58 HRGELLDQA----------ADKLKKATNLGCATEKAEESCIGSWFRVVVGSVQSLMREKR 107 Query: 556 TLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI 615 Q P ++ I++DEAH Y+R+L HF+ K+ Sbjct: 108 LNQ----FPKDYFNTIIIDEAHHC-------------------LSDGYQRVLSHFNEAKV 144 Query: 616 -ALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ---EGVYL 667 +TATP + Q F Y YT A+ +GFL PI+ T + GV + Sbjct: 145 LGVTATPDRGDMRNLGQFFESLAYEYTLPRAIKEGFLC----PIKAQTIPLKLDLSGVSV 200 Query: 668 SKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKT 727 G DF+ D N L YL+ + Sbjct: 201 QAG---------------------DFKNGDLG-------------NALEPYLESIADE-- 224 Query: 728 LVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLP 787 ++ C T+ + + ++ + +K+ + + + + + +++ + ++ F+ + Sbjct: 225 MLKCCTDHKTVVFLPLIKTS--QKFKDILNKKGFR-AAEVNGNSQDREQVLADFDSGKY- 280 Query: 788 NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL 830 N++ LLT G D PS+ IV LR + R LY QM GR TRL Sbjct: 281 NVICNSMLLTEGWDCPSVDCIVVLRPTKIRSLYVQMVGRGTRL 323 >UniRef50_Q06683 Putative ATP-dependent helicase IRC3 n=6 Tax=Saccharomyces cerevisiae RepID=IRC3_YEAST Length = 689 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 101/396 (25%), Positives = 162/396 (40%), Gaps = 66/396 (16%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK------RIL 498 LR YQ+DA+ A +I +G + I +++ATG GKT + + ++ FK + L Sbjct: 33 LRDYQQDAIDACVNSIRQGTKRIGVSLATGGGKT-VIFSNLINQLRQNYFKERQGNFKSL 91 Query: 499 FLVDRRSLGEQALGA----FEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK 554 LV RR L QA F D +++ + G D EDS I VA+VQ+L++ Sbjct: 92 ILVHRRELALQATATLKKIFPDLKVHIEM--------GKYDCDIEDSDVI-VASVQTLIR 142 Query: 555 RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK 614 R + D + I++DEAH ++YR ILDHF A Sbjct: 143 RLHKYD----TNSVNLIIIDEAHHS-------------------VANSYRSILDHFKA-S 178 Query: 615 IALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 A T P + F R + V+D + + I + E + S + + Sbjct: 179 TAETKIPVIGFSATFERADKRAL--SMVMDKIVYHRGILEMIDDKWLCEAKFTSVKIEAD 236 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 ++D DF++A + + N + + + TL+F V Sbjct: 237 --------LSDVKSTADDFQLAPLSSLMNTKEINEVILKTYLHKKQEKSLKSTLLFGVDK 288 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 AH V+ L FK ++ +T D + R +I +F K +++ Sbjct: 289 AH----VQSLHKLFKDNGINTDY-----VTSDTKQIER--DNIIQKF-KNGETEVLMNCG 336 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL 830 + T G D+P+I I+ R +SR L QM GR RL Sbjct: 337 IFTEGTDMPNIDCILLCRPTKSRSLLIQMIGRGLRL 372 >UniRef50_B5IP85 Type III restriction enzyme, res subunit n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IP85_9CHRO Length = 1060 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 99/402 (24%), Positives = 150/402 (37%), Gaps = 96/402 (23%) Query: 468 LLAMATGTGKTRTAIAMMFRLIQ--SQRFKRILF-----LVDRRSLGEQALGAFEDTRIN 520 L+ ATGTGKT A + RL +RF + R+ + +QAL F + Sbjct: 344 LVVAATGTGKTVLAAFDVARLHADFPERFPSPDPPPLLLIAHRKEILQQALATFRQV-LR 402 Query: 521 GDTFNSIFDIKGLTDKFPEDSTKIHV-ATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRG 579 +F ++ + G S HV A+VQSL + Q +P R+D ++VDE H Sbjct: 403 DPSFGELW-VDG-----ERPSQWRHVFASVQSLSQ---QDTAEIPADRFDVVIVDEFHHA 453 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATP----ALHTVQIFGEPVY 634 ++Y R LDH + + LTATP L + FG + Sbjct: 454 A-------------------AASYLRWLDHITPKLLLGLTATPERADGLDILHWFGGRIA 494 Query: 635 RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFE 694 + +D L+ P + D D Sbjct: 495 AELRLWSALDQGLLS---PFHYFA----------------------------VADATDLS 523 Query: 695 VADFNRGLVIPA---------FNRA--VCNELTNYLDPTGSQKTLVFCVTNAHADMVVEE 743 ++ RG +PA R + +EL L + L FCV+ HA + E Sbjct: 524 ALEWRRGGYVPAELSTLYTGDHRRVDLILSELDKKLADPSRMRALGFCVSVEHAHFMAER 583 Query: 744 LRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIP 803 RA L +A+ DA A + + R L I+ VDL G+DIP Sbjct: 584 FRAR------GLNAEAL-----DASSPADVRRDALRRLQNGEL-QILFAVDLFNEGLDIP 631 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 +I ++ LR S +++ Q GR RL PE K+ + D + Sbjct: 632 AIDTVLLLRPTESAVVFLQQLGRGLRLSPETGKSCLTVLDFI 673 >UniRef50_A1SJ00 Type III restriction enzyme, res subunit n=3 Tax=Actinomycetales RepID=A1SJ00_NOCSJ Length = 558 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 102/434 (23%), Positives = 162/434 (37%), Gaps = 88/434 (20%) Query: 441 SELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFL 500 S+ LR YQ +A +++ + + LL +ATG GKT ++ R ++S RIL + Sbjct: 135 SKYELRPYQLEAAERIQQDL-EDTNRALLVLATGLGKTVVGGEVIRRHLESHPDARILVV 193 Query: 501 VDRRSLGEQ---ALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 + L EQ AL D + D P + VAT+ S++ Sbjct: 194 AHMKELVEQLEKALWRHLDKSVPTQVLTG--------DTRPTSFEGVTVATIDSVLGLVR 245 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIA 616 P I++DE H GE +QL LD DA + Sbjct: 246 TDWRP------SLIMIDETHH---------VGETGMFAQL---------LDECQDARQFG 281 Query: 617 LTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQI------ITRNAQEGVY 666 +TATP FG+P Y + DG+L D + + R+A E Sbjct: 282 VTATPWRGDKFDITSRFGQPSYSLGIAEGMADGYLAQVDYRMYVDNLDWDFVRHASE--- 338 Query: 667 LSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQK 726 + + + N+ L +P + + +E + Sbjct: 339 ------------------------HGYSIKELNKALFLPQRDEEIVDEFRQAWREIRDPR 374 Query: 727 TLVFCVTNAHADMVVEELRAAFKK-KYPQLEHDAIIKITGDADKDARKVQTMITRFNKER 785 +VFC T HA+ + L A + + H + + ++ Q ++ F R Sbjct: 375 AIVFCQTIEHAERMATLLAGADQSWRRASYLHSGLSR---------QQRQILLNAFRLGR 425 Query: 786 LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 +P I+ VD+ GVD+P + I FLR SR ++ Q GR RL K S K+ D V Sbjct: 426 VP-IITCVDVFNEGVDVPDVNLIAFLRVTHSRRIFVQQLGRGLRL--REGKESLKVLDFV 482 Query: 846 -DIYSTLESVDTMR 858 D+ +D R Sbjct: 483 TDVRRVAAGLDLKR 496 >UniRef50_A4CPV8 Putative helicase n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CPV8_9FLAO Length = 496 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 106/405 (26%), Positives = 158/405 (39%), Gaps = 78/405 (19%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ+D + + AI +G + I+ + TG GKT T ++ + R R+L L DR Sbjct: 2 LRSYQKDLISRLRLAIRQGNRRIIAVLPTGGGKTFTFTHIVKGAVDKGR--RVLILTDRI 59 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L QA GA + ++ +IK + P ++ A V++L +R + D Sbjct: 60 ELLRQAGGALQVYGLDP------IEIK--AGRKPYLGGVLYTAMVETLARRVKKKDYQHF 111 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP-AL 623 + + +++DEAH F Y SA DA + TATP + Sbjct: 112 LQKMQVVIIDEAHM------------RSFDKLFPYFSA--------DARVLGFTATPRRM 151 Query: 624 HTVQIFGEPVYRYTYRTAVIDGFLIDQD---PPIQIITRNAQEGVYLSKGEQVERISPQG 680 GE Y + V +L+D P + GV +GE Sbjct: 152 GRKNQLGE--YYHHLEVGVEIEYLVDNGFLAEPNYYGVESDLSGVRTVRGEY-------- 201 Query: 681 EVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMV 740 D E F RG+V N+ + +KTLVF A + Sbjct: 202 ----DANEVADRFSKTKLYRGVV------------ENWKRISPGEKTLVFASNIASS--- 242 Query: 741 VEELRAAFKKKYPQLEH-DAIIKITGDADKDARKVQTMITRFNKERLPNIVVT-VDLLTT 798 +EL F ++ H DA + +D D R +R P V+ V +LT Sbjct: 243 -QELITEFTQQGVDARHLDATV-----SDLDRRNTLAWF-----DRTPGAVLCNVGILTK 291 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 G D P I ++ R +S LY QM GR +R+ KTSF I D Sbjct: 292 GFDQPDIRTVILYRATKSVPLYLQMCGRGSRMAH--GKTSFNILD 334 >UniRef50_Q1WS72 DNA/RNA helicase, DEAD/DEAH box family n=14 Tax=Lactobacillus RepID=Q1WS72_LACS1 Length = 951 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 95/399 (23%), Positives = 168/399 (42%), Gaps = 68/399 (17%) Query: 436 DNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK 495 +N SE+ Q A++ +EK + + + + L+ ATGTGKT A + Q +RF Sbjct: 203 NNKAKSEIVPNKMQMAALKELEKIVAEKKSKALVVSATGTGKTYLG-AFAVKEYQPKRF- 260 Query: 496 RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHV-ATVQSLVK 554 LF+V R + ++A+ +F+ I G + G+ +D+ ++ +T+Q++ + Sbjct: 261 --LFVVHREQIAKKAMESFKKV-IGGSG-----RLYGMLSGDRQDTQAKYIFSTIQTVSQ 312 Query: 555 RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-V 613 + + +P +D I++DEAHR +Y++I+ +F Sbjct: 313 DKIL--DQLPSNYFDYILIDEAHRSA-------------------APSYQKIMHYFKPDF 351 Query: 614 KIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQV 673 + +TATP ++ + VY L D + +I R+A E LS + Sbjct: 352 WLGMTATPE----RMDNQDVYA-----------LFDYNLAYEIRLRDALENKMLSPFHYI 396 Query: 674 ERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVT 733 + D ED + R L P + + ++L Y LVFC Sbjct: 397 G--------VQDYEEDGITVDETTNLRYLTAPKRVKYILDQLDYYGYSGLKVHGLVFCSR 448 Query: 734 NAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTV 793 A EL AF DA + ++D+ + + + R +E ++TV Sbjct: 449 QDEA----LELAQAFT--------DAGHQAKALTNQDSNERRRAVVRELEEGKIEYIITV 496 Query: 794 DLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 +L G+DIP + +V LR +S I++ Q GR R P Sbjct: 497 NLFNEGIDIPCVNQVVMLRNTQSSIVFIQQLGRGLRKYP 535 >UniRef50_B1IDR5 Restriction/helicase domain protein n=19 Tax=cellular organisms RepID=B1IDR5_CLOBK Length = 1002 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 101/387 (26%), Positives = 164/387 (42%), Gaps = 73/387 (18%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q +A++ +EK GQ + LL ATGTGKT + F L ++ KR LF+V R + + Sbjct: 260 QVEAIQGLEKLRENGQDKGLLISATGTGKTYLS---AFEL-RNYNPKRALFIVHREQIAK 315 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK-RTLQSDEPMPVAR 567 QAL +F + + GDT S+ + G + +D T+Q+L K LQS Sbjct: 316 QALNSFRN--VFGDT-RSMGILSGTSKDVDKD---FIFCTIQTLSKDEVLQS---FGKNE 366 Query: 568 YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALH-T 625 +D I++DE H+ ++Y++I+++F+ + +TATP Sbjct: 367 FDYIIIDEVHKA-------------------GANSYQKIVNYFNPKFLLGMTATPERSDD 407 Query: 626 VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND 685 IF Y Y + D P GV + +E Sbjct: 408 FDIFKMFNYNIAYEIRLQRALEEDLLCPFHYF------GVSDVTIDGIE----------- 450 Query: 686 TLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELR 745 L+D DF + LV + + +++ Y K L+FC A +EL Sbjct: 451 -LDDKTDF------KYLVAEERVKHIIDKINFYGYCGERVKGLIFCSDKKEA----KELS 499 Query: 746 AAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPN---IVVTVDLLTTGVDI 802 F K + + +TG++ ++ R + I R ++ N + TVD+ GVDI Sbjct: 500 DIFNTKGYK-----TVGLTGESSQEER--EKAIERLEQDETLNSLDYIFTVDIFNEGVDI 552 Query: 803 PSICNIVFLRKVRSRILYEQMKGRATR 829 PS+ +V LR +S I++ Q GR R Sbjct: 553 PSVNQVVMLRPTKSSIIFVQQLGRGLR 579 >UniRef50_Q6FK44 Similar to uniprot|Q06683 Saccharomyces cerevisiae YDR332w n=1 Tax=Candida glabrata RepID=Q6FK44_CANGA Length = 682 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 102/396 (25%), Positives = 161/396 (40%), Gaps = 65/396 (16%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK----RILFL 500 LR YQ DA+++ AI G++ I +++ATG GKT +++ L Q R R L L Sbjct: 27 LRDYQNDAIKSCLDAIALGKKRIGVSLATGGGKTVIFSSLINLLRQRNRGNACRFRTLIL 86 Query: 501 VDRRSLGEQALGAF----EDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRT 556 V RR L EQA+ ED I + N D+ ++ + VA+VQS+++R Sbjct: 87 VHRRELAEQAVRTTSRINEDLNIQLEMGNQNCDV---------SNSDVIVASVQSIIRRL 137 Query: 557 LQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIA 616 + E D I++DEAH +Y+++L HF A Sbjct: 138 HKYRE----GDIDLIIIDEAHHA-------------------AADSYKKVLKHFRC-DTA 173 Query: 617 LTATPALHTVQIFGEPVYRYTYRTAVIDGF--LIDQDPPIQIITRNAQEGVYLSKGEQVE 674 T P + F RY + ++ + F L+ I++I N + SK V Sbjct: 174 NTRIPVIG----FSATFERYD-KKSLKESFDELVYHRGIIEMIDDN---WLCESKFTTVR 225 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 ++ TL DF+ +R L N + N + +L+F V Sbjct: 226 LEVDLSKIPTSTLTS--DFQTGALSRLLNTQTVNSIIYNSYLEKRKENNIKSSLLFGVDI 283 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 H +E L F ++ IK + K + + + R K +++ Sbjct: 284 NH----IECLERYFNERG--------IKAKAVSSKTSVEDRQKAIRDIKSGELEVLLNCG 331 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL 830 + T G DIP+I I+ R +SR L QM GR RL Sbjct: 332 IFTEGTDIPNIDCILLCRPTKSRTLLVQMIGRGLRL 367 >UniRef50_B5CWI1 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CWI1_9BACE Length = 1039 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 107/460 (23%), Positives = 182/460 (39%), Gaps = 83/460 (18%) Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQ----RFKRILFLVDRRSLGEQALGAFEDTRINGDT 523 L+ ATGTGKT + Q Q R RILF R + Q+L + + Sbjct: 334 LVVAATGTGKTVISAFDYQSFCQQQTGVGRTSRILFTAHREEILRQSLHTYRSV-LQDAN 392 Query: 524 FNSIFDIKGLTDKFPE-DSTKIHVATVQSLVKRTLQS-DEPMPVARYDCIVVDEAHRGYI 581 F +++ + ++ P+ ++ H+ S+ ++ +P YD IV+DEAH Sbjct: 393 FGTLW----VGNEAPQTEADYAHLFVSISMFNSRFEALFSQLPADYYDYIVIDEAHH--- 445 Query: 582 LDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQIFGEPVYRYTYRT 640 SQ D +YR++ HF + I LTATP Sbjct: 446 -------------SQAD---SYRKLFSHFHPQLLIGLTATPER----------------- 472 Query: 641 AVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP--------QGEVINDTLEDDQD 692 +DG +D R + E + L + Q ++P ++ +D+L + Q Sbjct: 473 --MDG----KDLRPDFGGRISAE-IRLPQALQAGLLTPFQYLCVTDDTDLTDDSLWNGQR 525 Query: 693 FEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL-RAAFKKK 751 + + L +P + + + L YL + + L FCV HAD + +L + F K Sbjct: 526 YVIDRLADKLCVPERAQHIVDALHRYLADEYTCRALCFCVNKKHADFMALQLQKYGFNAK 585 Query: 752 YPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFL 811 +T D + RK + + L + + VD+ GVDIP + ++FL Sbjct: 586 ----------SLTSDTPQPQRK---QLAEDLRNGLVHYLCVVDIFNEGVDIPEVDTVLFL 632 Query: 812 RKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV-DIYSTLESVDTMRPVVVRPKVEL-Q 869 R S ++ Q GR RL P KT + D V + + R + +RP+ + Q Sbjct: 633 RPTDSLTIFLQQLGRGLRLSP--GKTELTVLDFVAQAHKKYDFASKFRALTLRPEKNIAQ 690 Query: 870 TLVNEIT--DSETYKITEADGRSFAEHSHEQLVAKLQRII 907 + N T + I E R + + +Q + R++ Sbjct: 691 QIANGFTLLPTGCSIIMEKQARQYILENIQQAIYNKNRLV 730 >UniRef50_D1BZV1 Type III restriction protein res subunit n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BZV1_XYLCX Length = 980 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 98/405 (24%), Positives = 171/405 (42%), Gaps = 68/405 (16%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q DA+ A+ G++ ++ ATGTGKT + A+ R + +R+LF+V R + + Sbjct: 239 QRDALNALAAVRDSGEKRAIVISATGTGKTILS-ALDVRAVNP---RRLLFVVHREQILD 294 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY 568 + + + + GD D LT + + + ATVQ+L + + + P V + Sbjct: 295 RTIQEYRKV-LGGDAS----DYGKLTGSSKDFAARYLFATVQTLAQPDVLARFPADV--F 347 Query: 569 DCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV-KIALTATPALHTVQ 627 D ++VDEAHRG G +RR++ HFD V + +TATP Sbjct: 348 DYVIVDEAHRG---------GS----------PTHRRVIGHFDPVFMLGMTATPE----- 383 Query: 628 IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP---QGEVIN 684 RT DGF + ++ N + L++ + ++P G Sbjct: 384 -----------RT---DGFNV-----FELFHYNVPYEIRLNRALDEDMLTPFHYYGITDA 424 Query: 685 DTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL 744 +D ++D + LV P + L Y + + L+FC A + + L Sbjct: 425 TFDDDTTVDALSDLDL-LVSPQRVSHLIWALETYAQAGTAPRGLIFCSRTQEARRLSDVL 483 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPS 804 + + P +TG + R + + + L + ++TVD+ GVDIPS Sbjct: 484 NRSLLRGRPL----RTASLTGVDSIEHR--ERTVEQLESGEL-DYILTVDVFNEGVDIPS 536 Query: 805 ICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYS 849 I ++ LR+ +S I++ Q GR R C + K + D + Y+ Sbjct: 537 INQVIMLRQTQSAIVFVQQLGRGLRKCDQ--KEYLVVLDFIGNYA 579 >UniRef50_C1XZ08 DNA/RNA helicase, superfamily II n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ08_9DEIN Length = 524 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 107/428 (25%), Positives = 162/428 (37%), Gaps = 103/428 (24%) Query: 438 PGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRI 497 P + L L Q+ A+ V G L+ MATG GKT ++ + S+ F+R Sbjct: 7 PSPALLPLHRVQQQALEQVLSLYESGHSRQLVVMATGVGKTLWSVHL------SRHFRRT 60 Query: 498 LFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 LFLV L +Q+L AF R G I+ + TD + V + SLV R Sbjct: 61 LFLVHFEELLQQSLAAF---RRRGGEPGVIWGRR--TDL----EADVVVGMIPSLVHRL- 110 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIA 616 E +P R+D +VVDEAH RS+ + R++ HF + + Sbjct: 111 ---ERVPPERFDLVVVDEAHHA--------------RSR-----TWERVIRHFRPRLLVG 148 Query: 617 LTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQ-------DPPIQIITRNAQEGV 665 L+ATP + +F + Y AV DGFL++ D P+ I R A Sbjct: 149 LSATPYRTDGRSLLSLFDTLAFSYRLPEAVRDGFLVEPKILEVSTDQPLSIGRRGA---- 204 Query: 666 YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ 725 D++ A + + P N + + + ++ Sbjct: 205 --------------------------DYDEAQLSHAVDTPERNALLVRTVGEF---ARNR 235 Query: 726 KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKER 785 K +V+ HA E L A F+ + E + G+ K K++ R + Sbjct: 236 KGVVYAAGVRHA----EHLAALFRSQGIAAE-----SVYGEDPKRREKLE----RHRRGE 282 Query: 786 LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE------VNKTSF 839 ++ LL D P+I V R S LYEQ GR RL E KT + Sbjct: 283 F-QVLTNAMLLVESYDDPTINLGVMGRPTASPTLYEQALGRPARLLREGRAWDGTPKTDY 341 Query: 840 KIFDCVDI 847 D +D+ Sbjct: 342 LWIDLMDL 349 >UniRef50_A6LX80 Type III restriction protein, res subunit n=15 Tax=cellular organisms RepID=A6LX80_CLOB8 Length = 845 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 147/679 (21%), Positives = 278/679 (40%), Gaps = 114/679 (16%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q +A+ +E + +G + L+ ATG GKT A S+ +R+LF+ R + + Sbjct: 240 QIEALYELENSREEGFDKGLVVAATGVGKTYLAA------FDSKEAERVLFVAHREEIIK 293 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY 568 QA +F++ R N D DI + ++ + + VQ+L K +E + Sbjct: 294 QAAISFKNVR-NSD------DIGFFYNNTKDNDKSMIFSLVQTLGKDEYLKEEYFTRDYF 346 Query: 569 DCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA-LHTV 626 D IV+DE H S YR+I+D+F + LTATP L + Sbjct: 347 DYIVIDEFHHA-------------------VSSNYRKIIDYFTPKFLLGLTATPERLDSK 387 Query: 627 QIFG----EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEV 682 +F VY A+ G+L+ P + G+Y E Sbjct: 388 DVFSLCDYNTVYEIRLSDAINKGYLV----PFRYY------GIY-------------DET 424 Query: 683 INDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT-NYLDPTGSQKTLVFCVTNAHADMVV 741 +N D+ +F +N + A EL N+ S + L FC + HA+ + Sbjct: 425 VN---YDEVEFRNGKYNDKELEEALMLNKRGELILNHYKKYNSNRALGFCTSRKHAEYMA 481 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVD 801 K + + ++ +G+ + + + + K + ++ +VD+ G+D Sbjct: 482 --------KYFCENRITSLAVYSGENGEYSENRTEALNKLTKGEVK-VIFSVDMFNEGLD 532 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVV 861 IPSI ++FLR +S ++ Q GR R + K + D + Y + + + Sbjct: 533 IPSIDMVMFLRPTQSPTVFLQQLGRGLRKYKD--KKYLNVLDFIGNYKKADLLPFLLSGK 590 Query: 862 VRPKVELQT-LVNEITDSE------TYKITEADGRSFAEHSH--EQLVAKLQRIIGLATF 912 ++E + + NE E ++I + + A+ + ++++ + R+ L Sbjct: 591 TYSRIEAKKGIFNEEEYPEDCRVDFDFRIIDVFKKLAAKEMNIKDKILEEFLRVKELVGH 650 Query: 913 NRDRSE---TIDKQVRRLDELCQDAAGVN-FNGFASRLREKGPHWSAE--VFNKLP-GFI 965 R E ID +V + + + +N FN + L+E G + +E +FN + FI Sbjct: 651 RPSRVEFYNNIDDEV--YSAIKKTKSSLNPFNDYLGFLKENGELFESEEALFNNIGHDFI 708 Query: 966 ARLE--------KLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQR 1017 +E K+ + N + ++ID+E V +S Y Y + ++ +++ Sbjct: 709 KMIETTKMSKSYKITVFLAFYNGGKVKMEIDEEDV-YRSFYEFYHKGSNKVD----MIRD 763 Query: 1018 SPNA---QPALQAVINRPRDLTRKGLVELQ-EWFDRQHFEESSLRKAWKETRNEDIAARL 1073 A + + I +D K L++ + ++FD E+ L K+ R+ + Sbjct: 764 KGTADFEKWDKKKYIKLAKDNPVKFLIKSEGKFFDNG---ENKLMVLMKDMRDVIVDEEF 820 Query: 1074 IGHIRRAAVGDALKPFEER 1092 +GH+R A + A + +EER Sbjct: 821 VGHMRDAIMYRAERYYEER 839 >UniRef50_B9ZK35 Type III restriction protein res subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZK35_9GAMM Length = 1066 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 113/428 (26%), Positives = 162/428 (37%), Gaps = 77/428 (17%) Query: 434 FADNPGMSE-----LGLRYY--QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMF 486 F+ PG + LR Y Q++ + + + G L+ ATGTGKT A Sbjct: 318 FSSGPGAQKEATTFFDLRPYAFQQEILEDIRRERRSGIDRHLVIAATGTGKTMIAAFDYR 377 Query: 487 RLIQSQRFK---RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTK 543 R + Q K +LF+ R + QA+ +F + F + + P Sbjct: 378 RFAREQADKGRPSLLFIAHREEILRQAMASFRQV-LQDHEFGDVL----VGGARPSQDRH 432 Query: 544 IHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAY 603 + TV S R L +P +D +V+DEAH +Y Sbjct: 433 L-FCTVASWNARDLDRLDP---EHFDYVVLDEAHHSS-------------------AGSY 469 Query: 604 RRILDHF-DAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIIT 658 +RIL+H + LTATP A Q FG+ RYT+ + D P Sbjct: 470 QRILEHVRPKCLLGLTATPERTDADDIRQHFGQ---RYTHEIRLPDAIERRLLVPFHYFG 526 Query: 659 RNAQEGVYLSKGEQVERIS-PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTN 717 E V LS R+S +G + LE V NR A V + Sbjct: 527 VADHESVDLS------RVSWRRGGYDAEELEG-----VFTGNR-----ARADWVLQQAHE 570 Query: 718 YLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTM 777 + GS + L FC++ AHA + E A K+ P +TGD+ RK Sbjct: 571 HATDLGSVRGLGFCISRAHARFMAEYFSA---KQVPS------AVLTGDSSDHERK---S 618 Query: 778 ITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKT 837 I R +E + TVDL GVD+P + ++ LR S +Y Q GR RL K Sbjct: 619 IQRDLREGRIRFIFTVDLYNEGVDLPEVDTVLLLRPTESLTVYLQQMGRGLRL--HEGKP 676 Query: 838 SFKIFDCV 845 + D V Sbjct: 677 HLTVLDFV 684 >UniRef50_B6QJS8 DEAD/DEAH box helicase, putative n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QJS8_PENMQ Length = 666 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 107/420 (25%), Positives = 185/420 (44%), Gaps = 73/420 (17%) Query: 442 ELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLI-QSQRFKRILFL 500 ++ LR YQE+++++V + + KG + L++ATG+GKT ++ R+ ++ R + L + Sbjct: 58 KIQLRDYQEESIQSVIENLGKGHNRLGLSLATGSGKTVIFTQLIHRIPPRNGRADQTLII 117 Query: 501 VDRRSLGEQALG----AFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV-KR 555 R+ L EQA A+ D + + G T + I VA+++SL K Sbjct: 118 AHRKELVEQAARHCRLAYPDKTVEIEM--------GATKA--SGAADITVASIRSLASKG 167 Query: 556 TLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI 615 ++ +P + + ++VDEAH +I+ + YR+ L++F + Sbjct: 168 RIEKFDP---SYFKLVLVDEAH--HIVAPQ-----------------YRQALEYFGLTEP 205 Query: 616 ALTATPALHTVQIFGEPVYRY--TYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQV 673 + A PAL V +R+ +VID + +D I + + ++ + V Sbjct: 206 SNNA-PALVGV---SATFFRFDGLKLGSVIDHIVYHKDYIDMIGEKWLSDAIFTTVKTNV 261 Query: 674 ERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT--NYLDPTGSQK-TLVF 730 + V D+ DF + A N A N++T ++L ++ TLVF Sbjct: 262 D----LSRVAKDS--------SGDFATRALSEAVNTATVNDVTVRSWLTHASDRRSTLVF 309 Query: 731 CVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIV 790 CV H V +L AF+ + IT + + R + + F K P ++ Sbjct: 310 CVDIEH----VRQLTEAFRDNGIDARY-----ITANTPRQTRNEE--LEAFKKGEYP-VL 357 Query: 791 VTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST 850 + L T G DIP+I +V R RS+ L QM GR RL P+ K + I D V +T Sbjct: 358 LNCGLFTEGTDIPNIDCVVLARPTRSKSLLIQMIGRGLRLHPQ--KENCHIIDMVSTLNT 415 >UniRef50_B8HYS8 Putative uncharacterized protein n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HYS8_CYAP4 Length = 952 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 102/208 (49%), Gaps = 14/208 (6%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYP-DDPNTTLIKMRMFGEATAKHLGLLLNIP-PCENQ 62 SNF FL+ N I AAE Y P ++ +R F E A+ + +I +Q Sbjct: 6 SNFGFLQPHNQELAEIGEAAERMYALKQPQASISVIRTFAERLARLVACQESIDDESIDQ 65 Query: 63 HDLLRELGKIAF---VDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYY 119 + L ++GK F +D++I+ F KLRR+GN A HE+ +L DA LR + ++VWYY Sbjct: 66 KERLDKIGK-KFKRTLDESIIDKFDKLRRLGNSATHEWRGNLRDAGASLRDAYEISVWYY 124 Query: 120 RLVTKDYDFPVPV-FVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 + Y+ P F LPE L +E+ T Q EQ K + QQ V+L Sbjct: 125 KKYI-SYNPPASYEFELPEVLPELDKEEIQT---QAEQLNAAKQNLLQLEKQLQQAQVSL 180 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQ 206 + ++E QQE A+L AL+A+ Sbjct: 181 DTNSGLIESLQQEL---NHAKLRALQAE 205 >UniRef50_A7HHG6 Type III restriction protein res subunit n=8 Tax=Bacteria RepID=A7HHG6_ANADF Length = 1418 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 113/432 (26%), Positives = 167/432 (38%), Gaps = 90/432 (20%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAI--AMMFRLIQSQRFKRILFLVDRRSL 506 Q DA+ A+ G++ L+ MATG GKT A A FR R+LF+ RR L Sbjct: 335 QRDALDALAATRADGEKRALVVMATGLGKTLLAAYDADAFRSTLDHPI-RVLFIAHRREL 393 Query: 507 GEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTK----IHVATVQSLVKRTLQSDEP 562 QA F ++ D++ F ED ++ I VA+VQ L + ++ E Sbjct: 394 LVQAATTFRRV-----LRGAMPDLR--VGWFAEDRSELEADIVVASVQKLSRP--ENLER 444 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATP 621 + R+D +VVDE H +YRRIL D + LTATP Sbjct: 445 LAAERFDYVVVDEVHHA-------------------EAPSYRRILSRIDPGFLLGLTATP 485 Query: 622 -ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG 680 + G L D + P + A GV G + +R+ P Sbjct: 486 DRADEGDVLG----------------LFDDNLPFR-----ADLGV----GIEAKRLVPFA 520 Query: 681 EV-INDTLEDDQDFEVADFNRGLVIPAFNRAVCNE-----LTNYLDPTGSQKTLVFCVTN 734 + DT++ D + NR AV + L + L G +TLVFC + Sbjct: 521 YFGLKDTVDYSHD-NIPWRNRRFDPKRLEEAVQTQERMERLWSALGEHGGMRTLVFCCSI 579 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 HA+ F K++ + + + D D R + R+ + V VD Sbjct: 580 PHAE---------FAKRWLEGRGVRVRAVHSDPGSDDR--SRALADLAAGRI-DAVCAVD 627 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV-------DI 847 L GVD+P + +V LR S +++ Q GR R+ K + D V D Sbjct: 628 LFNEGVDVPLVDRVVMLRPTESPVVFLQQLGRGLRIAE--GKERLTVIDFVGNHRVFLDR 685 Query: 848 YSTLESVDTMRP 859 TL S+ RP Sbjct: 686 VRTLLSLGDARP 697 >UniRef50_C5DW03 ZYRO0D10802p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DW03_ZYGRO Length = 650 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 108/402 (26%), Positives = 159/402 (39%), Gaps = 84/402 (20%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ+ + +++ ++ I +++ATG GKT A + + + Q R L LV RR Sbjct: 24 LRDYQQHVIDKCLESLKDNKRRIGVSLATGGGKT-VIFANLIKQLSQQTPHRALVLVHRR 82 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTK---IHVATVQSLVKRTLQSDE 561 L QA + F + I+ K+ K + VA+VQSL++R L + E Sbjct: 83 ELVLQAAQTIKK-------FMPLARIQIEMGKYVCQDVKDCDVIVASVQSLIRR-LDNYE 134 Query: 562 PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF--DAVKIALTA 619 + D ++VDEAH ++Y RILDHF D + +A Sbjct: 135 STDI---DLVIVDEAHHAV-------------------ANSYLRILDHFKKDIPVVGFSA 172 Query: 620 T------PALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQV 673 T AL TV E VY + D +L + I + V Sbjct: 173 TFERADHKALSTV--MDEIVYHKGILEMINDNWLCEGKFTTVKIDADLNS---------V 221 Query: 674 ERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL-----DPTGSQKTL 728 ER S DF++ +R + IP N V L YL P G TL Sbjct: 222 ERAS-----------GSDDFKLDQLSRVMNIPEINGLV---LKTYLHKSKEQPGGFNSTL 267 Query: 729 VFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPN 788 +F V H V+ L F + E ++ AR+ +I F K + Sbjct: 268 LFAVDIKH----VKALHHLFVSYGIKAE-------CVTSETKARERDQIIDNFKKGDV-K 315 Query: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL 830 +++ + T G D+P I I+ R RSR L QM GR RL Sbjct: 316 VLINCGIFTEGTDMPGIDCILLCRPTRSRSLLVQMIGRGLRL 357 >UniRef50_Q0AY89 DNA or RNA helicases of superfamily II-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AY89_SYNWW Length = 773 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 108/463 (23%), Positives = 184/463 (39%), Gaps = 97/463 (20%) Query: 395 IW-YRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQ--NQWFADNPGMSELGLRYYQED 451 +W YR + + R+ K+ ELL+ +G P + + + G L LR +QE+ Sbjct: 113 VWTYRQLVNERDKVKS--------ELLQFMGQSPHFRIYDDYLPRQRG-KVLELRPHQEE 163 Query: 452 AVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQAL 511 + +++ + L+A A GTGKT TA+ L LF+ L +QA Sbjct: 164 TLERLQELRGEYHSMALIADAQGTGKTTTAV-----LDACNMGLCTLFVAHTLELLQQAA 218 Query: 512 GAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCI 571 F++ I + G D + +A++Q L R Q + I Sbjct: 219 NRFKELWPRAQV-KIIDNYAGPLD------ADVMIASIQGLHNRLTQ----FAPDHFGYI 267 Query: 572 VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALH----TV 626 ++DEAH + YR++L +F + LTATP H + Sbjct: 268 IIDEAHHAA-------------------ATTYRKVLSYFKPRFLLGLTATPERHDQESIM 308 Query: 627 QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDT 686 +IF +R +TAV G L+ PI+ + + + S+ IN Sbjct: 309 EIFQNEAHRLDLKTAVEIGELV----PIRCV--RVKTNIDFSQVR-----------INGI 351 Query: 687 LEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRA 746 + D + + +P NR + + YL +K +VFC + HA V E R Sbjct: 352 -----RYNYRDLDSCVHVPERNRLI---VETYLSHVPGEKAVVFCASIQHAMEVAELFR- 402 Query: 747 AFKKKYPQLEHDAIIK---ITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIP 803 D+ +K + G K R + ++ ++++++ ++ D+L G D P Sbjct: 403 -----------DSGVKAEVVEGRMKK--RDREAVLENYHQDKV-KVLCACDILNEGWDSP 448 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD 846 + R SR++Y Q GR TR P K + +FD +D Sbjct: 449 ETAVLFMARPTLSRVIYLQQLGRGTRKAP--GKEALLVFDFID 489 >UniRef50_B0G2L1 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2L1_9FIRM Length = 111 Score = 73.2 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 46/61 (75%) Query: 613 VKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQ 672 +KIALTATPALHT +IFG+PV++YTYR AVI+G+L+D D P + + + G++ G+ Sbjct: 1 MKIALTATPALHTTEIFGQPVFKYTYREAVIEGYLVDHDAPHHLERKLSTGGIHYKSGDT 60 Query: 673 V 673 V Sbjct: 61 V 61 >UniRef50_C8P3G7 Helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3G7_ERYRH Length = 950 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 97/422 (22%), Positives = 176/422 (41%), Gaps = 86/422 (20%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q +A+ ++ +G + L+ ATGTGKT A A + I+ K++LF++ R + + Sbjct: 220 QSEALENLKNFRKQGATKALVISATGTGKTYLA-AFDVKAIKP---KKMLFIIHREQVAK 275 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY 568 A+ F+ I D +F + + +D T+Q++ + Q+ + + Sbjct: 276 DAMNTFQS--IISDRSMGLF-----SGNYKDDQFDFLFTTIQTISRP--QNLQKFKQNEF 326 Query: 569 DCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATP----AL 623 D IV+DEAHR ++Y ++++F + +TATP +L Sbjct: 327 DYIVIDEAHRSV-------------------ANSYLNVMEYFKPKFFLGMTATPERSDSL 367 Query: 624 HTVQIFGEPV-YRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEV 682 + ++F + Y + A+ + L+ P + + GE+ Sbjct: 368 NVFELFDYNIAYEIRLQKALEENMLV----PFHYFG--------------ITDLQIDGEI 409 Query: 683 INDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVV 741 IND Q ++ +R I + T Y G++ K L+FC TN A + Sbjct: 410 IND---HSQFGQLVSEDRIEHILKY--------TKYYGHCGNKLKGLMFCSTNQEASELS 458 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLP-NIVVTVDLLTTGV 800 ++L + I ++G+ ++ R + I R + N ++TVD+ G+ Sbjct: 459 KKL---------NIRGIRTISLSGENSQEER--ENAIVRLTSDDGDLNYILTVDIFNEGI 507 Query: 801 DIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPV 860 DIP I +V LR S I++ Q GR RL NK + D + YS + M P+ Sbjct: 508 DIPEINQVVMLRSTESSIVFIQQLGRGLRLSK--NKDYVVVIDFIGNYSN----NYMIPI 561 Query: 861 VV 862 + Sbjct: 562 AL 563 >UniRef50_A9GJE0 Putative helicase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GJE0_SORC5 Length = 1030 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 98/416 (23%), Positives = 165/416 (39%), Gaps = 80/416 (19%) Query: 442 ELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLV 501 EL +QE + + + +G LL ATGTGKT A RL ++ R+LF+ Sbjct: 308 ELRAEPFQERLLEQIALSRERGHHRNLLVSATGTGKTVMAAIDYARLREALPRARLLFVA 367 Query: 502 DRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE 561 R + EQ+L F + F ++ + + P + A++QSL L + Sbjct: 368 HRGEILEQSLATFRHG-LRDHAFGELW----VGGRHPRRFEHV-FASIQSLSAAGLDDLD 421 Query: 562 PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI-ALTAT 620 P + +D +++DE H +YR +L+ V++ LTAT Sbjct: 422 P---SHFDVVIIDEFHHAA-------------------APSYRVLLERVRPVELLGLTAT 459 Query: 621 PALH-TVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYL-------SKGEQ 672 P + + G R + D IDQ + + +G+ L +G Sbjct: 460 PERSDGLPLLGWFDDRIAAELRLWDA--IDQHRLVPFVYYGIHDGLDLRDVPWRRGRGYD 517 Query: 673 VERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCV 732 V+ +S + ND + R V +L ++D T + + L FCV Sbjct: 518 VDGLS-KLLTANDV--------------------WARQVVAQLVAHVDDTRTIRALGFCV 556 Query: 733 TNAHADMVVEELRAAFKKKYPQLEHDAIIKIT---GDADKDARKVQTMITRFNKERLPNI 789 + HA + ++ H+A + T GD+ D R+ + R+ N+ Sbjct: 557 SIEHARFMA------------RVFHEAGVAATAVWGDSPDDERR--AALADLGARRI-NV 601 Query: 790 VVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 V +VDL G+D+P++ ++ LR S L+ Q GR R KT + D V Sbjct: 602 VFSVDLFNEGIDVPAVDTLILLRPTDSPTLFLQQLGRGLRR--SAGKTVCTVLDFV 655 >UniRef50_D0DSQ0 Phage DEAD box family helicase n=2 Tax=Lactobacillus fermentum RepID=D0DSQ0_LACFE Length = 975 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 106/439 (24%), Positives = 172/439 (39%), Gaps = 97/439 (22%) Query: 435 ADNPGMSE-LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQR 493 +D PG ++ + Q A+ +E + G+ L+ ATGTGKT +++ + Sbjct: 206 SDEPGKAQQVKPNQMQTAALNEIEALRLAGKDRGLVVSATGTGKTYLGAFD----VRAAK 261 Query: 494 FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV 553 KR+LFL R + +++ +F++ + GD N G DK + K A+VQ+L Sbjct: 262 PKRMLFLAHREQILQKSCQSFKNI-LGGDPDNFGLYTGGARDK----NAKYLFASVQTLS 316 Query: 554 KRT-LQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA 612 + L P +D I++DE H +Y+RI+D+F Sbjct: 317 REEHLHRFSP---DDFDYILIDEVHHAG-------------------AESYQRIMDYFTP 354 Query: 613 -VKIALTATPALHT-VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIIT------------ 658 + +TATP IF Y Y + ++ P + Sbjct: 355 KFFLGMTATPERSDDFNIFNLFHYNVAYEIRLQQALELNMLAPFHYVGLTDYAFADQYEE 414 Query: 659 -----RNAQEGVYLSKGEQ---VERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRA 710 RN ++G S+ ++ VE ++ + E +N LE Sbjct: 415 EVDQYRNRKQGSKPSRKQEQRAVELLTSK-ERVNYILEQ--------------------- 452 Query: 711 VCNELTNYLDPTGS-QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADK 769 T+Y +G LVFC + A A+ + AA H A K AD Sbjct: 453 -----TDYYGYSGPVLHGLVFCSSVAEAEALARAFTAA--------GHPA--KALSGADN 497 Query: 770 DARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 R+ Q + N L ++TVD+ G+DIP + +VFLR +S I+Y Q GR R Sbjct: 498 GDRRRQVVHELENG--LIEYIITVDIFNEGIDIPCVNQVVFLRNTQSAIVYVQQLGRGLR 555 Query: 830 LCPEVNKTSFKIFDCVDIY 848 P K ++ D + Y Sbjct: 556 KYP--GKEYVEVLDFIGNY 572 >UniRef50_B4D2R4 Type III restriction protein res subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2R4_9BACT Length = 572 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 107/417 (25%), Positives = 164/417 (39%), Gaps = 97/417 (23%) Query: 440 MSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILF 499 MS LR YQ A AVE+ K Q L + TG GKT + +I+ ++ R L Sbjct: 1 MSTFTLRDYQAAAADAVEEKW-KKHQSTLCVLPTGCGKT----VLFAEIIRRRQPGRALV 55 Query: 500 LVDRRSLGEQALGAFED-TRINGDT-------FNSIFDIKGLTDKFPEDSTKIHVATVQS 551 + R L QA+ E T + + NS+F T + VA++Q+ Sbjct: 56 IAHREELIVQAVKKIEAVTGLEAEVEMAEQVASNSLFH-----------KTPVVVASIQT 104 Query: 552 LV----KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRIL 607 LV +R ++ P +D IVVDE H ++YR +L Sbjct: 105 LVSGGNRRRMERFRP---EDFDTIVVDEFHHAT-------------------AASYRAVL 142 Query: 608 DHF----DAVKIALTATPALHTVQIFG----EPVYRYTYRTAVIDGFLIDQDPPIQIITR 659 ++F A + +TATP G + Y R A+ DG+L+ + + I Sbjct: 143 EYFLRNEKAKLLGVTATPDRADQAALGLVCESVAFDYEVRAAIDDGWLVPVEQQMVTI-- 200 Query: 660 NAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL 719 +G+ S+ I+ T D E+A + R + + Sbjct: 201 ---DGLDYSQ-------------IHTTAGDLNSAELAS------VMEQERVMHGTCAATI 238 Query: 720 DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK--ITGDADKDARKVQTM 777 + GS++T++F + A+M L H A I + G D++ R+ Sbjct: 239 EIAGSRQTILFTSSVKQAEMACNILN----------RHRAGIAQFVCGATDREERR---K 285 Query: 778 ITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV 834 I R + I+ V + T G D P + IV R +SR LY QM GRATR P V Sbjct: 286 IMRRVLDGSTQILCNVGVATEGFDAPGVEVIVMGRPTKSRALYAQMAGRATRPLPGV 342 >UniRef50_A4XFJ4 Type III restriction enzyme, res subunit n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFJ4_CALS8 Length = 899 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 101/407 (24%), Positives = 156/407 (38%), Gaps = 77/407 (18%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q +A+ ++K +G L+ ATG GKT A S FK +LF+ R + Sbjct: 292 QTEALYWLKKCREEGLDRALVVAATGIGKTFLA------AFDSIGFKTVLFVAHREEILR 345 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY 568 QA +F+ R N I T E I A+VQ+L K + + Sbjct: 346 QAALSFKTIRSNAT-------IGFFTGDRKETEKDIIFASVQTLGKEEYLNPTYFSSDYF 398 Query: 569 DCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA-LHTV 626 + I++DE H +Y+ I+++F + LTATP L Sbjct: 399 EYIIIDEFHHAV-------------------AKSYQNIINYFKPKFLLGLTATPERLDNK 439 Query: 627 QIFGEPVYRYTY----RTAVIDGFLIDQDPPIQIITRNAQEGVY-LSKGEQVERISPQGE 681 +F Y Y + A+ G+L+ P G+Y + Q+ I+ G+ Sbjct: 440 DVFELCNYNVVYELRLKDAINKGYLV----PFHYY------GIYDETDFSQIPEIN--GK 487 Query: 682 VINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVV 741 D LE V+ RA L NYL QKTL FC + HA+ + Sbjct: 488 YKEDELEK-------------VLMIHKRADLI-LKNYL-KFNKQKTLAFCCSRNHAEFMA 532 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVD 801 + K +G+ K+A + I + ++ ++ TVD+ GVD Sbjct: 533 DYFNKNGVK--------CCAVYSGEQGKNALQRSEAIRKLKNGQI-KVIFTVDMFNEGVD 583 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIY 848 IP I ++FLR S ++ Q GR R NK + D + Y Sbjct: 584 IPEIDMVMFLRPTESPTVFLQQLGRGLRKAK--NKNYLTVLDFIGNY 628 >UniRef50_Q6CMW9 KLLA0E17095p n=2 Tax=cellular organisms RepID=Q6CMW9_KLULA Length = 690 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 96/399 (24%), Positives = 159/399 (39%), Gaps = 77/399 (19%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMM--FRLIQSQRFKRILFLVD 502 LR YQ+D + A+ +G+ I +++ATG GKT ++ FR + + + L LV Sbjct: 53 LRDYQQDCINKCVDAVTQGKMRIGVSLATGGGKTVIFSNLLDRFRSLGAHSSRAALILVH 112 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 RR L QA ++ D N ++ L E + + +V ++V+R E Sbjct: 113 RRELAMQAASTI--SKFMPD-LNVQMEMGKLHANLEE--ADVVIGSVLTMVRRL----EE 163 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA 622 P D IV+DEAH +Y ++L HF+A TPA Sbjct: 164 YPPDSIDLIVIDEAHHA-------------------VADSYVKVLAHFNA------DTPA 198 Query: 623 LHTVQI-FGEPVYRYTYR--TAVID------GFL--IDQDPPIQIITRNAQEGVYLSKGE 671 I F R R +AV+D G L ID++ + GV LSK + Sbjct: 199 TRVPVIGFSATFERADKRALSAVMDEIIYHKGILEMIDENWLCEGKFTTVDVGVDLSKVK 258 Query: 672 QVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFC 731 V + DF++ ++ + N V N + + TL+F Sbjct: 259 SV----------------NSDFQLEGLSKVMNTKEINEIVLNTYLHKKKLHNLKSTLLFA 302 Query: 732 VTNAHADMVVEELR-AAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIV 790 V AH + + + A +Y +TG R ++++ F ++ ++ Sbjct: 303 VDVAHCKTLFQTFQNAGINAQY----------VTGKTRTGER--DSIVSDFKNGKI-QVL 349 Query: 791 VTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 + + T G DIP++ ++ R +SR L QM GR R Sbjct: 350 MNCGIFTEGTDIPNVDCVLLCRPTKSRSLLVQMIGRGLR 388 >UniRef50_A7HMW9 Type III restriction protein res subunit n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HMW9_FERNB Length = 848 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 86/382 (22%), Positives = 155/382 (40%), Gaps = 63/382 (16%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q++ +R + +G + L+ +ATG GKT A S +F R+ F+ R + + Sbjct: 243 QQEVLRELNNTRAEGFTKALVVLATGVGKTFLAA------FDSMQFNRVFFIAHREEILK 296 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY 568 QA FE R + T + I A+V ++ K +D+ P + Sbjct: 297 QAKSTFEKVRPTS-------RMGFFTSSGKDTDADIVFASVFTIGKEEYLNDDYFPPDYF 349 Query: 569 DCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALHTVQ 627 D I++DE H +Y+++L +F+ + LTATP + Sbjct: 350 DYIIIDEFHHA-------------------AAESYKKLLSYFNPKFLLGLTATPE----R 386 Query: 628 IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTL 687 + G+ V+ V D L D ++ + G+Y E + +I+ Sbjct: 387 MDGKDVFEICDYNVVYDLRLPDAINRGYLVPFHYY-GIY------DETDFSKIPIIDGHY 439 Query: 688 EDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAA 747 ++D+ + L++ V + Y G ++ + FCV+ HA+ + + Sbjct: 440 KEDE------LEKALMLHKRADLVLQKYVKY----GRKRAIGFCVSRNHAEYMAD----Y 485 Query: 748 FKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICN 807 F K +A +G+ ++A I + K R +++ TVD+ GVDIP I Sbjct: 486 FNKN----GVNACAVYSGEQGRNALPRWEAIEKL-KNREIDVIFTVDVFNEGVDIPEIEM 540 Query: 808 IVFLRKVRSRILYEQMKGRATR 829 ++FLR S ++ Q GR R Sbjct: 541 VMFLRPTESTTVFIQQLGRGLR 562 >UniRef50_C7N5J4 DNA/RNA helicase, superfamily II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5J4_SLAHD Length = 974 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 97/388 (25%), Positives = 165/388 (42%), Gaps = 73/388 (18%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q +A+ + + +G+ LL ATGTGKT + +++ K++L++V R + Sbjct: 225 QTEALAGLAQLRDEGKNRALLISATGTGKTYLSAFD----VKAFSPKKVLYVVHRNKIAR 280 Query: 509 QALGAFEDTRINGD-TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVAR 567 +++ +F++ + + +F + TD + ATVQ+L KR ++ E Sbjct: 281 KSMESFQNVLSSKEYSFGMFSGSEKTTD------ARCIFATVQTLAKR--ENLEKFAKDE 332 Query: 568 YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTV 626 +D I+VDE HR ++Y R +D+F+A + ++ATP Sbjct: 333 FDYIIVDEVHRA-------------------GANSYLRFMDYFEAEFILGMSATPE---- 369 Query: 627 QIFGEPVYRYTYRTAVIDGF-LIDQDPPIQIITRNAQEGVYLSKGEQ--VERISPQGEVI 683 RT D + L D + +I +A E L V + GE+ Sbjct: 370 ------------RTDDFDIYELFDHNIAYEIRLNDALEYNLLVPFHYFGVAEVCIDGEL- 416 Query: 684 NDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEE 743 LE+D A FNR LV R V N + Y LVFC A EE Sbjct: 417 ---LEED-----ASFNR-LVSDERVRHVLNAINKYGYSGERVHGLVFCSRIEEA----EE 463 Query: 744 LRAAFKKKYPQLEHDAIIKITGDADKDAR--KVQTMITRFNKERLPNIVVTVDLLTTGVD 801 L +K+ L + + ++G + R ++ + + E + + TVD+ G+D Sbjct: 464 L----SQKFNNLGYKT-VALSGSTSEALRDDAIERLEQDEDDENALDYIFTVDIFNEGID 518 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATR 829 IP++ +V LR +S I++ Q GR R Sbjct: 519 IPAVNQVVMLRPTQSAIVFVQQLGRGLR 546 >UniRef50_Q027W9 Type III restriction enzyme, res subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027W9_SOLUE Length = 570 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 101/418 (24%), Positives = 162/418 (38%), Gaps = 86/418 (20%) Query: 434 FADNPGMSELGLRYYQEDAVRAVEKAIVKGQQ-EILLAMATGTGKTRTAIAMMFRLIQSQ 492 AD P ++ LR YQE A+ ++ + V G++ L+ MATG GKT A R+ ++ Sbjct: 130 LADRP-VATRQLRGYQESAIASILEVAVSGKRRSALVVMATGLGKTFVAAESYRRMRETH 188 Query: 493 RFKRILFLVDRRSLGEQALGAF----EDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVAT 548 R L L L Q AF + + I G +N + P+ + A Sbjct: 189 PTLRALVLAHTNDLVYQLERAFWPCLDKSEITG-VWNGY--------EVPDPEASLTFAC 239 Query: 549 VQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILD 608 + S+ + LQ + + D ++VDE H G ++R L+ + R Sbjct: 240 IDSVASK-LQVSGRLDLG-VDLVIVDECHHA---------GSDEYRVVLEAL----RCGS 284 Query: 609 HFDAVKIALTATP------ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ 662 I +TATP ++H+ +FGEPV + G+L + D + + N Q Sbjct: 285 QDGPFLIGMTATPWRPDGTSIHS--LFGEPVSCVDIVQGLKMGWLSNVDYRMHVDNINWQ 342 Query: 663 EGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT 722 E +V ++P+G NR + I ++ AV +L Sbjct: 343 EL------NRVHHLTPRG-----------------LNRTIFIQEWDDAVVQKLKETWYEI 379 Query: 723 GSQKTLVFCVTNAHADMVVEELRA----------AFKKKYPQLEHDAIIKITGDADKDAR 772 + +VFC HA + + + A P+L H KI D Sbjct: 380 PHARAIVFCGNIDHAITMRDRVNGVGFARAEALYAGSPGAPRLSHAQRSKILAD------ 433 Query: 773 KVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL 830 F+ ++ VDLL G+D+P + VF R SR ++ Q GR RL Sbjct: 434 --------FHDGH-AGVLCAVDLLNEGIDLPDVNICVFQRVTHSRRIFVQQLGRGLRL 482 >UniRef50_D1N7I0 Helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7I0_9BACT Length = 550 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 114/437 (26%), Positives = 175/437 (40%), Gaps = 85/437 (19%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ+ AV AV K + + + + T GKT ++ IQ Q R++ L + Sbjct: 3 LRQYQQQAVDAVYKYLRRYDDNPCVVIPTAGGKTPILATIVKDAIQ-QWDGRVMILSHVK 61 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L EQA+ D I K + K VA +QS + T Sbjct: 62 ELLEQAVDKIHTVYPECD-----IGIYSTGLKRWDTDNKCIVAGIQSAYRNTDG------ 110 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-IALTATPAL 623 +D I+VDEAH L E+ +G +R+ L RR+ DH ++ I LTATP Sbjct: 111 FGNFDLIIVDEAH----LIPEKGDG--MYRNFL------RRMKDHNPELRVIGLTATPYR 158 Query: 624 HTVQIFGEP-------VYRYTYRTAVIDGFLIDQDPPIQIITRNAQ---EGVYLSKGEQV 673 T P + + + GFL P++ + G+++ GE + Sbjct: 159 LTSGPICAPDNILNKICFEVGVKELLQQGFLC----PLRSKASRQEIDASGLHVRAGEFI 214 Query: 674 ERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVT 733 E E D+ D LV A C+E+ +Y + ++FC + Sbjct: 215 ES------------EVDKLMNTGD----LVAQA-----CSEIISYA--RERKAVIIFCCS 251 Query: 734 NAHADMVVEELRAAFKKKYPQLEHDAIIK-ITGDADKDARKVQTMITRFNKERLPNIVVT 792 HA V+ +R +HD+ + + GD R ++ RF ++ +V Sbjct: 252 IDHAQNVLAHIR----------KHDSTAEAVFGDTLPSFRA--EILERFKAGKI-KFLVN 298 Query: 793 VDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDC--VDIYST 850 V +LTTG D P+I +V LR S LY QM GR RL P+ DC +D Sbjct: 299 VGVLTTGFDAPNIDCVVLLRPTASPGLYYQMVGRGFRLHPDKK-------DCLVLDFGGN 351 Query: 851 LESVDTMRPVVVRPKVE 867 +E + + V PK + Sbjct: 352 IERHGPVDSIQVEPKAD 368 >UniRef50_A4QW28 Putative uncharacterized protein n=2 Tax=Sordariomycetes RepID=A4QW28_MAGGR Length = 643 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 145/598 (24%), Positives = 223/598 (37%), Gaps = 141/598 (23%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 + LR YQE+ ++AV ++ G + I T+T L L Sbjct: 43 ISLRSYQEECIQAVLSSLENGHKRIDRVPPISKTATQT-----------------LILAH 85 Query: 503 RRSLGEQA----LGAFEDTRIN---GDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK- 554 RR L EQA A+ D + G T +S GL D I VA+VQS++ Sbjct: 86 RRELVEQAARHCTNAYPDKTVEIEMGSTHSS-----GLAD--------ITVASVQSIISG 132 Query: 555 -RTLQSDEPMPVARYDCIVVDEAHR----GYI--LDKEQTEGELQFRSQLDYVSAYRRIL 607 R + D +R+ ++VDEAH GY+ L + Q L VSA Sbjct: 133 DRMAKFD----ASRFKLVLVDEAHHIVAPGYLKTLAHFGLASKQQTSPHLVGVSA---TF 185 Query: 608 DHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYL 667 FD +++ E VY Y + D +L D V Sbjct: 186 SRFDGLRLGAA----------IDEIVYHKDYVDMIGDKWLSD---------------VLF 220 Query: 668 SKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTN---YLDPTGS 724 + E IS N DF ++ +R A N NE+T G Sbjct: 221 TTVESSADISRARTGAN------ADFLPSELSR-----AVNTNEVNEITVRSWMAKAPGR 269 Query: 725 QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKE 784 + TLVFCV AH + +K+ + DA +TGD K R + + F Sbjct: 270 KSTLVFCVDLAHVN--------GLTQKFREFGIDARF-VTGDTHKVERSER--LEEFRAG 318 Query: 785 RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDC 844 + P ++V + T G DIP+I +V R +SR L QM GR RL P K + +I Sbjct: 319 KFP-VLVNCGVFTEGTDIPNIDCVVLARPTKSRNLLVQMIGRGMRLHP--GKKNCQI--- 372 Query: 845 VDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITE---ADGRSFAEHSHEQLVA 901 +D+ S+LE+ P + ++ LVN T + + E A+G + Sbjct: 373 IDMVSSLETGIVTTPTLF--GLDPGELVNNATVDQLRDLQEQKAAEGTKTGTANDLGPAH 430 Query: 902 KLQRIIGLATFNRDRSETI---------DKQVRRLDELCQDAAGVNFNGFASRLREKGPH 952 K + + +++ E++ +K +R L E C G + R GP Sbjct: 431 KKPKSVNISSLAFTEYESVLDLISDTSGEKHIRSLSEYCWVEIGRD------RYVLSGPG 484 Query: 953 WSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEA 1010 G R+EKL + P F ++ + V + P++ L+A Sbjct: 485 ----------GTFLRIEKLAAEAEGF---PKFRAVEVRALPVGLSKSPFAAPREILKA 529 >UniRef50_B8MIT3 DEAD/DEAH box helicase, putative n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MIT3_TALSN Length = 667 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 108/419 (25%), Positives = 179/419 (42%), Gaps = 71/419 (16%) Query: 442 ELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLI-QSQRFKRILFL 500 ++ LR YQE+++++V + + KG + L++ATG+GKT ++ R+ ++ + L + Sbjct: 58 KIKLRDYQEESIQSVLEHLEKGHNRLGLSLATGSGKTVIFTQLIGRVPPRNGGANQTLII 117 Query: 501 VDRRSLGEQALG----AFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV-KR 555 R+ L EQA A+ D I +I+ +K + I VA+++SL K Sbjct: 118 AHRKELVEQAARHCRLAYPDKSI---------EIEMGANK-ASGAADITVASIRSLSSKD 167 Query: 556 TLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI 615 ++ +P + + ++VDEAH +I+ Q+R L Y S + + V + Sbjct: 168 RIEKFDP---SLFKLVLVDEAH--HIVAP-------QYRQALSYFSLTKP--SNNAPVLV 213 Query: 616 ALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVER 675 ++AT G + Y ID +I + I + V LS+ V R Sbjct: 214 GVSATFFRFDGLKLGSAIDHIVYHKDYID--MIGEKWLSDAIFTTVKTHVDLSR---VAR 268 Query: 676 ISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT--NYLDPTGSQK-TLVFCV 732 S DF + A N A N++T ++L ++ TLVFCV Sbjct: 269 DSS-----------------GDFATRALSEAVNTATVNDVTVRSWLTHASDRRSTLVFCV 311 Query: 733 TNAHADMVVEELR-AAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVV 791 H + E R +Y IT + + R + + F + P +++ Sbjct: 312 DIEHVHQLTEAFRDNGIDARY----------ITANTPRQTRNEE--LEAFKRGEYP-VLL 358 Query: 792 TVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST 850 L T G DIP+I +V R RS+ L QM GR RL PE K + I D V +T Sbjct: 359 NCGLFTEGTDIPNIDCVVLARPTRSKSLLIQMIGRGLRLHPE--KENCHIIDMVSTLNT 415 >UniRef50_C6R1X3 Helicase n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1X3_9MICC Length = 1075 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 95/406 (23%), Positives = 169/406 (41%), Gaps = 67/406 (16%) Query: 448 YQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLI-QSQRFKRILFLVDRRSL 506 +Q + ++ A KG+ L ATGTGKT + RL QS + ++LF+ R+ + Sbjct: 324 HQVRMLEEMQNARSKGRHRNLAVAATGTGKTVFSALDYRRLCEQSGKKLKLLFIAHRKEI 383 Query: 507 GEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVA 566 +QA F D + G+ F + K PE + + AT+Q+L L++ P Sbjct: 384 LDQARRTFGDVMLKGN-FGELLT----GGKKPEYNEAV-FATIQTLSGAALENYAP---D 434 Query: 567 RYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-IALTATP---- 621 +D I++DE H +++ ++ ++F+ + I LTATP Sbjct: 435 YFDVIIMDECHH-------------------IKAASWDKVFNYFEPREFIGLTATPERED 475 Query: 622 ALHTVQIFGEPVYRYTYRT--AVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ 679 ++ + + + R A+ D L+ P Q ++ G + RI+ + Sbjct: 476 GVNIADKYFDGYVATSIRLWDALEDHLLV----PFQYFG--------IADGTDLRRINVR 523 Query: 680 GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADM 739 G ++ ++ + + R L R + EL +D K L FCV+ HA+ Sbjct: 524 GGKYDENALENL-YTKDEAERRL------RIIVEELREKVDNPLRMKALGFCVSVKHAEY 576 Query: 740 VVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTG 799 + ++ + D ++ D R+ + M ++ + TVDL G Sbjct: 577 MAQKFNEV------GIPADFLV----GTDSAERRAEVMKNLADEAHELTTIFTVDLFNEG 626 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 VDIPS+ ++ LR +S L+ Q GR R P K+ + D V Sbjct: 627 VDIPSVDTLLMLRPTQSLTLFLQQLGRGLRRAPL--KSVLTVLDFV 670 >UniRef50_A1SY30 Type III restriction enzyme, res subunit n=3 Tax=Bacteria RepID=A1SY30_PSYIN Length = 1149 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 87/374 (23%), Positives = 159/374 (42%), Gaps = 75/374 (20%) Query: 463 GQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD 522 G ++ LL ATGTGKT + Q+ + KR+LF+V R ++ ++L F++ G Sbjct: 232 GARKALLISATGTGKTYLSAFDA----QALKPKRLLFVVHRLTIALKSLETFQNVFGTGK 287 Query: 523 TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYIL 582 T K DK ATVQ++ K+ + +D I++DE+HR Sbjct: 288 TMGVYSGSKQELDK------DFLFATVQTISKQ--NHLDQFNKDYFDYIIIDESHRS--- 336 Query: 583 DKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALHTVQIFGEPVYRYTYRTA 641 ++Y+R+++HF+ + +TATP + GE ++ Sbjct: 337 ----------------GANSYKRLIEHFEPTFLLGMTATPE----RTDGEDIFS------ 370 Query: 642 VIDGFLIDQDPPIQI-ITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNR 700 L D + +I + R +EG+ +I++ ++++ + DF Sbjct: 371 -----LFDHNIAYEIRLNRAMEEGML----SNFHYYGVTDLIIDNVIQEN----MGDF-- 415 Query: 701 GLVIPAFNRA--VCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL-RAAFKKKYPQLEH 757 + + R + Y G + LVFC N A + E ++ F+ Sbjct: 416 -AFLSSHERVDNIIKHACFYGSDNGITRGLVFCSRNEEAKKLAEMFNQSGFRS------- 467 Query: 758 DAIIKITGDADKD--ARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVR 815 + ++G+ +D AR ++ + T E+L + + TVD+ G+DIP + I+ +R Sbjct: 468 ---LALSGENSEDERARAIERLETDNLAEKL-DYIFTVDIFNEGIDIPKVNQIIMIRPTD 523 Query: 816 SRILYEQMKGRATR 829 S I++ Q GR R Sbjct: 524 SAIVFVQQLGRGLR 537 >UniRef50_A5KTC5 Type I site-specific deoxyribonuclease n=2 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTC5_9BACT Length = 496 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 9/104 (8%) Query: 726 KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKER 785 KTLVF T++HAD ++ R F + ++ I KIT +A+ + ++ F Sbjct: 32 KTLVFAKTDSHADDIIRIAREVFNEG-----NEFIRKITYNAENPS----NFLSDFRTGY 82 Query: 786 LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 P IVVTVD++ TG D+ I +VF+R +RSR +EQM GR TR Sbjct: 83 YPRIVVTVDMIATGTDVKPIECLVFMRNIRSRNYFEQMIGRGTR 126 Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 21/170 (12%) Query: 1008 LEAFDSLVQRSPNAQPALQAVINRP---RDLTRKGLVELQEWFDRQHFEESSLR--KAWK 1062 ++ F ++++ + ALQ N+P R LT + + +L E + ++ R +A++ Sbjct: 319 IKKFKDFLEQNKDKIDALQVFYNQPYHRRTLTFEMVKDLVEKLKYPPYSLNTERIWRAYE 378 Query: 1063 ETRNEDI---------AARLIGHIRRAAVGDALKPF----EERVDHALTRIKGEND-WSS 1108 T + A L+ H + D L PF E+R L ++ E ++ Sbjct: 379 ITEESKVKGNAQALTDAVSLVRH--GIGLDDMLVPFAVVVEKRYQEWLVKLASEGKTFTP 436 Query: 1109 EQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLL 1158 EQL+WL+ + + + + +D D F F GG + FD LD+++ Sbjct: 437 EQLAWLNMMKTHIAQSIAIDKDSFDHTPFAEHGGLYGAHKVFDGQLDSVI 486 >UniRef50_A0LI77 Type III restriction enzyme, res subunit n=6 Tax=cellular organisms RepID=A0LI77_SYNFM Length = 1077 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 100/403 (24%), Positives = 157/403 (38%), Gaps = 104/403 (25%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK--RILFLVDRRSL 506 Q +A+ A+ + +G Q L+ +ATG GKT A S RF ++LF+ R + Sbjct: 380 QREALEALARTRAEGNQAGLVVLATGLGKTWLAA------FDSVRFGAGKVLFVAHREEI 433 Query: 507 GEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRT-LQS-DEPMP 564 QAL F R F ++ G T+K P + A++Q+L + L+S D + Sbjct: 434 LRQALKTFRRIR----PFAALGLYNG-TEKLP--GADVLFASIQTLGRTNHLRSFDRNL- 485 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATP-- 621 +D +V+DE H +Y++++DHF A + LTATP Sbjct: 486 ---FDYVVIDEFHHAS-------------------ARSYQKLIDHFQPAFLLGLTATPER 523 Query: 622 -------ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 AL + VYR + DG L P + Y ++V+ Sbjct: 524 TDGGDLLALCAENL----VYRCDLVEGIRDGLLC----PFR----------YFGVPDEVD 565 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 ++ F R + A R N L Y G ++TL FC + Sbjct: 566 --------YSNIPWRSGRFNEEALTRAV---ATKRRAVNALEQYRSRAG-RRTLAFCCSQ 613 Query: 735 AHADMVV-----EELRAAFKKKYPQL-EHDAIIKITGDADKDARKVQTMITRFNKERLPN 788 HAD + + +RAA PQ +K D + D Sbjct: 614 RHADFMADYFTNQGVRAASVHSGPQTAPRGGTLKRLTDGELD------------------ 655 Query: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 ++ VD+ GVD+P++ ++ LR SRIL+ Q GR R+ Sbjct: 656 VIFAVDMFNEGVDLPNVDTVMMLRPTESRILWLQQFGRGLRVA 698 >UniRef50_C5NW00 DNA repair helicase Rad25 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NW00_9BACL Length = 937 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 95/399 (23%), Positives = 154/399 (38%), Gaps = 100/399 (25%) Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSI 527 LL ATGTGKT A M +S KR+LF+V R + QAL +TF +I Sbjct: 211 LLISATGTGKTFAAAFAM----KSIGAKRLLFIVHREQIARQAL----------ETFKTI 256 Query: 528 FDIKG----LTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILD 583 F LT K +TVQ++ K + + + +D I++DE HR Sbjct: 257 FGTSRSYGLLTGKEKNIEADFIFSTVQTMSKEDIF--KSFNDSHFDEIIIDEVHRAG--- 311 Query: 584 KEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATP----ALHTVQIFGEP-VYRYT 637 +Y R++D+F + +TA+P + + ++F VY Sbjct: 312 ----------------ADSYLRLMDYFKPTFYLGMTASPDRTDSFNIYELFNNNIVYEVR 355 Query: 638 YRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVAD 697 + A+ + L P + + G+VI++ Sbjct: 356 LKEAMENSLLC----PFHYF--------------GISDLEVDGKVIDE------------ 385 Query: 698 FNRGLVIPAFNRAVCNELT-------NYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFK 749 + F+ V NE NY +G + K LVFC + A ++ EE Sbjct: 386 ------LSEFSNLVSNERVEHIISKINYYGYSGDRVKGLVFCSSKQEAKVLSEEFNT--- 436 Query: 750 KKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIV 809 + Y +TG+ ++ R+ + N + + + TVD+ GVDIP + ++ Sbjct: 437 RGYNT------TSLTGEDSQERREHEISKLVANDGDMLDYIFTVDIFNEGVDIPEVNQVI 490 Query: 810 FLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIY 848 LR +S I++ Q GR R NK I D + Y Sbjct: 491 MLRPTQSFIIFIQQLGRGLR--KSANKDFVVIIDFIANY 527 >UniRef50_Q2NIB5 Predicted helicase n=2 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NIB5_METST Length = 937 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 97/387 (25%), Positives = 165/387 (42%), Gaps = 84/387 (21%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q+ ++ + K++ K ++ LL ATGTGKT A A + I K+ILFLV R + + Sbjct: 198 QKSFIKNLRKSLAKNDKKGLLISATGTGKT-FASAFALKEINP---KKILFLVHREQIAK 253 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPED-STKIHVATVQSLVKRTLQSDEPMPVAR 567 QA+ ++ G F+ G+ +D S +TVQ + K+ ++ E Sbjct: 254 QAMKSY------GKIFHE--KTLGILSGNKKDYSVDFLFSTVQMMSKK--ENYERYNRDY 303 Query: 568 YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV-KIALTATPALHTV 626 +D IV+DE HR G + +Y++I+++F+ + + +TATP Sbjct: 304 FDFIVIDEVHRA---------GSV----------SYQKIMNYFNPIFYLGMTATPD---- 340 Query: 627 QIFGEPVYRYTYRTAVIDGF-LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND 685 R+ D + L + + +I +NA E L N Sbjct: 341 ------------RSDEFDIYSLFNHNIIYEIRLKNALEEDMLCS-------------FNY 375 Query: 686 TLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEEL 744 D +V D ++ + E Y +GS+ K L+FC +A ++ +E Sbjct: 376 FGITDNAIDVNDMSKTRIDNII------ENIEYYGYSGSRVKGLIFCNNIHNAKILSKEF 429 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNI--VVTVDLLTTGVDI 802 + Y L ++G+ + RK T+ N +R N+ ++TVD+ GVDI Sbjct: 430 N---NRGYRTLS------LSGNNTQKERK-DTIDRLVNDDRCDNLDYIITVDIFNEGVDI 479 Query: 803 PSICNIVFLRKVRSRILYEQMKGRATR 829 + IV LR+ S I++ Q GR R Sbjct: 480 KEVNQIVMLRETESSIIFIQQLGRGLR 506 >UniRef50_Q6BK09 DEHA2F25828p n=5 Tax=Saccharomycetaceae RepID=Q6BK09_DEBHA Length = 704 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 100/420 (23%), Positives = 174/420 (41%), Gaps = 59/420 (14%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQ--RFKRILFL 500 L LR YQ +A+++V AI +G + +ATG GKT ++ ++ S R + L L Sbjct: 38 LKLRDYQVEAIKSVHNAISRGINRSAVVLATGGGKTVVFSHLISQIKPSTPDRGNKTLVL 97 Query: 501 VDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRT-LQS 559 + L QA + + N D++ L P + + VA+V +L++ + L Sbjct: 98 AHKEELVRQAADSIAEINPN---LKVDIDMRKLK---PSSNADVIVASVPTLIRMSRLSK 151 Query: 560 DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTA 619 +P + I++DE H +++ +IL +F+A Sbjct: 152 YDP---KEFKTIILDECHHAP-------------------ANSWSKILQYFEA------H 183 Query: 620 TPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ 679 TP QI+ V +T DG + + + RN E V + V S Sbjct: 184 TPQ---SQIY---VIGFTATMERSDGKSLAEIFDEIVFERNLLEMVQNKELADVRFSSID 237 Query: 680 GEV-INDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHAD 738 +V + D+E+ ++ + N V + + TL+FCV +H Sbjct: 238 VDVDLTKVATKKNDYEINSLSQAMNDSEVNLLVALSYSQLQKEFNFKSTLIFCVDISHC- 296 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 + L F+++ ++ +TG+ K R Q +I F K+ + ++ V + T Sbjct: 297 ---KTLCGVFQREGINAQY-----VTGETAKHER--QAIIEDF-KKGIIEVLCNVQVFTE 345 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST-LESVDTM 857 G DIP+I ++ R +SR L QM GR RL +KT + D T ++SV T+ Sbjct: 346 GTDIPNIDSLFLARPTKSRPLLVQMIGRGLRL--HKSKTHCHVVDIAGTRGTGIQSVPTL 403 >UniRef50_UPI0001972F9F hypothetical protein ClM62_08351 n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001972F9F Length = 1060 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 124/529 (23%), Positives = 211/529 (39%), Gaps = 94/529 (17%) Query: 343 LLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRD 402 +L ++ +H + PEY+T+ Q T+ R C R K GI Y Sbjct: 245 ILSDFNNQVIHTS-PEYQTNLQTTTPTNRVLTSMCSPD-----RLLFLLKYGITY----- 293 Query: 403 TRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVK 462 +H+ +EL + G+ Q + +RY Q A V + I + Sbjct: 294 ----------YHKTKELDD--GTIEQIDQKHI----------MRYQQFFAAMIVRERISE 331 Query: 463 GQQEILLAMATGTGKTRTAIAMMFRLIQS----QRFKRILFLVDRRSLGEQALGAFEDTR 518 G ++ G+GKT + + + L + + F+VDR L +Q+ F Sbjct: 332 GTTSGIIWHTQGSGKTALSFHLSYVLTDYFASINKVTKFYFIVDRLDLMKQSKEEFAARG 391 Query: 519 INGDTFNSIFDI--KGLTDKFPEDST---KIHVATVQSLVKRTLQSDEPMPVARYD-CIV 572 + T +S ++ + T++ E +T +I V +Q +R + P + Sbjct: 392 LVVKTASSRAELMEQFRTNQSQEGTTGEPEITVVNIQRFEERQDKVVLPSYATNLQRVFI 451 Query: 573 VDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA----VKIALTATPALHTVQ- 627 +DEAHRGY + EG + + FDA +KIALT TP L + + Sbjct: 452 IDEAHRGY-----KPEGSF--------------LANLFDADPNSIKIALTGTPLLKSERE 492 Query: 628 ---IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN 684 +FG ++ Y Y +V DG+ + I R E Y K E++ S + V Sbjct: 493 SWRVFGNYLHTYYYDKSVQDGYTLK-------IIREDIETSYKEKLEEIYH-SLENLVQK 544 Query: 685 DTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKT--LVFCVTNAHADMVV- 741 ++ D E ++ + L+ R + +L + G +V C T+ A + Sbjct: 545 KDVKKDDIIEHPNYVKELL-----RYIITDLKRFRIIRGDDTLGGMVICETSEQARRLFA 599 Query: 742 --EELRAAFKKKYPQLEHDAIIKITGDAD-KDARKVQTMITRFNKERLPNIVVTVDLLTT 798 +E++ K H + I D+D KD R + +IT F ++++ ++L T Sbjct: 600 YFDEIQNELNKDASSKSHFKVGLILYDSDDKDTR--ENVITDFKDNFKVDMLIVYNMLLT 657 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDI 847 G D P + + F RK+R L + + R R P N I D DI Sbjct: 658 GFDAPRLKRLYFGRKLRDHNLLQAIT-RVNR--PYKNNRYGYIIDFADI 703 >UniRef50_C4L054 Type III restriction protein res subunit n=70 Tax=Bacilli RepID=C4L054_EXISA Length = 959 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 100/389 (25%), Positives = 161/389 (41%), Gaps = 81/389 (20%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q A+ ++ +G Q L+ ATGTGKT A A R + KR+LF+V R + + Sbjct: 227 QRSALDGIDAVRQQGHQRALVVSATGTGKTYLA-AFDVRRYEP---KRMLFVVHREQILK 282 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM---PV 565 +A+ F I G+ I D L+ +K AT+Q++ K DE + Sbjct: 283 KAINDFHKV-IGGN----IEDYGILSGTSRVIDSKYVFATIQTISK-----DETLYQFAQ 332 Query: 566 ARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALH 624 +D I++DE+HR + Y+++L++F + +TATP Sbjct: 333 ETFDYILIDESHRAG-------------------ANTYQKLLEYFTPKFLLGMTATPE-- 371 Query: 625 TVQIFGEPVYRYTYRTAVIDGF-LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVI 683 R+ D F L D + +I + A E L + Sbjct: 372 --------------RSDGYDLFRLFDYNIAYEIRLQEALEENMLCPFHYFG--------V 409 Query: 684 NDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVE 742 D D + E+ F + + R + E Y +G + + L+FC + A + E Sbjct: 410 TDLEIDGEQKEIEVFQKLVSTERVERII--EKIKYYGYSGEKLRGLMFCSSKKEAIYLSE 467 Query: 743 ELRA-AFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKER-LPNIVVTVDLLTTGV 800 +L A FK +TGD + RK + N E+ L + ++TVD+ G+ Sbjct: 468 QLNARGFK----------TCALTGDDTQAKRKQEVN----NLEQGLLDYILTVDIFNEGI 513 Query: 801 DIPSICNIVFLRKVRSRILYEQMKGRATR 829 DIPSI +V LR+ S I++ Q GR R Sbjct: 514 DIPSINQVVMLRQTESSIIFIQQLGRGLR 542 >UniRef50_B0NL99 Putative uncharacterized protein n=3 Tax=Bacteria RepID=B0NL99_BACSE Length = 1076 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 98/422 (23%), Positives = 177/422 (41%), Gaps = 59/422 (13%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRL----IQSQRFKRILFL 500 +RY Q A A+ + + +G + ++ G+GKT + + + L + + + F+ Sbjct: 309 MRYQQLFASLAIRQKLAEGVKSGVVWHTQGSGKTALSYYLTYILNDFYSKQNKVAKFYFI 368 Query: 501 VDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL----VKRT 556 VDR L EQA FE + T N+ + L ++F + + V+ + ++R Sbjct: 369 VDRLDLLEQATQEFEARGLVVSTANTRAE---LMEQFRSNQAQQGVSGQAEITVVNIQRF 425 Query: 557 LQSDEPMPVARYDC-----IVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD 611 + E + ++ Y ++DEAHRGY G + D + D Sbjct: 426 AEDKEKVRISDYATNLQRIFILDEAHRGY------KPGGCFLANLFDADT---------D 470 Query: 612 AVKIALTATPALH----TVQIFGEPVYRYTYRTAVIDGF---LIDQDPPIQIITRNAQEG 664 A+KIALT TP L + ++FG ++ Y Y ++ DG+ +I +D I+ + Sbjct: 471 AIKIALTGTPLLKEERASCKVFGNYLHTYYYDKSIADGYTLKIIRED--IETSYKERLSD 528 Query: 665 VY-----------LSKGEQVERISPQGEVINDTLEDDQDF---EVADFNRGLVIPAFNRA 710 VY + K E +E S E+ + D ++F + D G+VI + Sbjct: 529 VYDKLETLVQKKDIRKSEIIEHPSYVSELARYIMTDLKEFRKIQGDDTLGGMVICETSEQ 588 Query: 711 VCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKD 770 + + + + + VV E +K KY L+ I+ T D K+ Sbjct: 589 ARRLYDVFQEEWQKYQPKPIKIKLSDGSYVVGEPEVDYKSKYRPLKAGIILHDTDD--KE 646 Query: 771 ARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL 830 RK ++ F K +I++ ++L TG D P + + F RK++ L + + R R Sbjct: 647 TRK--QIVKDFKKNMTVDILIVFNMLLTGFDAPRLKRLYFGRKLKDHNLLQAIT-RVNRP 703 Query: 831 CP 832 P Sbjct: 704 YP 705 >UniRef50_Q8YK43 All8075 protein n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YK43_ANASP Length = 681 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 167/394 (42%), Gaps = 82/394 (20%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ ++ + + +G + +L + TG GKT + + Q Q +++L + R Sbjct: 10 LRNYQHQWIKDIWNSWKRGNRRVLAQLPTGAGKTICFAHICQKFFQKQ--QKVLVIAHRI 67 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L QA E +I G+ + IKG PE +I VA++Q+L +R + + P+ Sbjct: 68 ELITQAAEKLE--QIVGE---PVGIIKGGCAAHPER--RIQVASIQTLARRDI-LELPLN 119 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI-ALTATPAL 623 + ++ DEAH S+YRR+++H+ +I +TATP Sbjct: 120 IG---LLLFDEAHH-------------------SSASSYRRLIEHYQEAQILGVTATPQR 157 Query: 624 HTVQ----IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN---AQEGVYLSKGEQVERI 676 Q +F + V + T + +G+L ++ T N + GV S+G Sbjct: 158 IDGQGFQELFDDLVVGISTSTLIKEGYL----SKFRLFTTNQTISTIGVKKSRG------ 207 Query: 677 SPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNEL-TNYLDPTGSQKTLVFCVTNA 735 DF + L + ++ +E+ NYL + +T++F + Sbjct: 208 ---------------DFRAKE----LAVAVTSQIGVDEIFQNYLKYAKNLRTVIFACSLE 248 Query: 736 HADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 H+ L A F++ + EH + G+ + R VQ ++ RF ++ ++ Sbjct: 249 HS----RALAAKFRRNGIKAEH-----LDGETPPELR-VQ-ILERFRGGE-TQVITNYEI 296 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 LT G D P+I I +R S L+ QM GR R Sbjct: 297 LTEGYDCPNIECIYCVRPTESSTLWLQMTGRVLR 330 >UniRef50_C7GA84 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=Clostridiales RepID=C7GA84_9FIRM Length = 993 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 102/398 (25%), Positives = 155/398 (38%), Gaps = 88/398 (22%) Query: 453 VRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALG 512 + ++K + G++ LL ATGTGKT + M L F+R+LFLV R L Q Sbjct: 232 ITNLKKILAAGEKRALLISATGTGKTYASAFAMREL----GFRRVLFLVHRGQLARQTRK 287 Query: 513 AFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM---PVARYD 569 ++E F + + + + E ATVQ TL DE + +D Sbjct: 288 SYE------KVFANTVSMGLVGAGYHEYEADYVFATVQ-----TLNRDEHLLQYAKDAFD 336 Query: 570 CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSA--YRRILDHFD-AVKIALTATPALHTV 626 CIV+DEAH +V A YR+I+DHF + + +TATP Sbjct: 337 CIVLDEAH---------------------HVPADTYRKIMDHFTPKLWLGMTATPDKRDD 375 Query: 627 QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDT 686 + G VY +I + L + + + P Sbjct: 376 NVEGRNVY--------------------EIFNYQIAYEIRLQQAMEENLLCPFHYFGITD 415 Query: 687 LEDDQDFEVA-DFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELR 745 L D E A DFN L R + N+ Y K L+FC EEL Sbjct: 416 LSMIGDEEAARDFNM-LTSDERVRHIVNQADYYGYSGDKVKGLIFCSNIKET----EELS 470 Query: 746 AAFKKKYPQLEHDA------IIKITGDADKDARKVQTMITRF-------NKERLP-NIVV 791 A K+ Q+ + A + + G A + R Q R +++R P + + Sbjct: 471 A----KFNQIINPATGKNFRTVALNGSASEQER--QDAFERLAMNEDESSEDRQPLDYIF 524 Query: 792 TVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 +V++L GVDI + ++ LR +S I++ Q GR R Sbjct: 525 SVEILNEGVDIVEVNQVIMLRPTQSPIVFIQQLGRGLR 562 >UniRef50_Q03EF5 DNA or RNA helicase of superfamily II n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03EF5_PEDPA Length = 950 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 113/482 (23%), Positives = 202/482 (41%), Gaps = 90/482 (18%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q+ A++A+ +GQ+ L+ ATGTGKT A +++ R ++ LF+V R + Sbjct: 220 QQAALKALINLRSEGQKRGLIISATGTGKTYLAAFD----VRNYRPRKFLFVVHREQILR 275 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY 568 +AL +F++ + G + + G T E K AT+Q+L + + ++ + + Sbjct: 276 KALLSFKN--VLGGPADDYGILAGGT---KEIDRKYVFATIQTLSRPDILNE--LKANTF 328 Query: 569 DCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQ 627 D I++DEAH+ ++Y++I++HF + +TATP Sbjct: 329 DYILIDEAHKA-------------------GAASYQKIINHFKPEFLLGMTATPE----- 364 Query: 628 IFGEPVYRYTYRTAVIDGF-LIDQDPPIQIITRNAQEGVYLSKGEQ--VERISPQGEVIN 684 RT + + L D +I ++A E LS+ + +G+VI Sbjct: 365 -----------RTDDFNIYELFDYHIAYEIRLQDAIEEKMLSEFHYIGITDYEYEGQVIT 413 Query: 685 DT--LEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVV 741 D L+ E D+ + +Y G Q L+FC A V Sbjct: 414 DNTPLKHLVSRERMDY-------------VEQQIDYYGHDGDQVYGLIFCSRTEEAHEVA 460 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVD 801 + + +K +P + +TG+ D R + I +F + +VTVD+ G+D Sbjct: 461 QIMT---QKGHP------TVALTGEDSVDNR--EATIKKFENGEIE-YLVTVDIFNEGID 508 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVV 861 IP I ++ LR S I++ Q GR R K I D + Y + M P+ Sbjct: 509 IPKINQVIMLRNTESSIIFIQQLGRGLRKSE--GKDFVTIIDFIGNYQN----NYMIPIA 562 Query: 862 VRPKVEL--QTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSET 919 + L +L N+I+ ++T ++ + F+E + EQ+ + L + R+ Sbjct: 563 LTGDQTLNKNSLRNKISINQTVGLSSIN---FSEIAREQIYNSINN-SNLTLLTKLRASY 618 Query: 920 ID 921 ID Sbjct: 619 ID 620 >UniRef50_C4R463 Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4R463_PICPG Length = 682 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 101/422 (23%), Positives = 169/422 (40%), Gaps = 104/422 (24%) Query: 441 SELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRF--KRIL 498 S + LR YQ+D + ++ K I G+ + +++ATG GKT + + I S ++ ++ L Sbjct: 56 STVRLRPYQKDCIESIMKVIRGGETRLAVSLATGGGKT-VIFSNLLNEIPSNKYNGQKTL 114 Query: 499 FLVDRRSLGEQALGA----FEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK 554 LV R+ L +QA F +I D+ GL +D + VA+V +L + Sbjct: 115 ILVHRKELADQAARTIKRFFPHMKIE-------IDMAGLRPTH-DDDVDVVVASVPTLAR 166 Query: 555 RTLQSDEPMPV--ARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA 612 ++ + I++DE H I D +Y +IL +F+A Sbjct: 167 NNSKNPRLFDYDPNEFKAIIIDECHHA-ISD------------------SYIKILQYFNA 207 Query: 613 VK---------IALTATPALHTVQ----IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITR 659 + + +AT H Q +F Y + V +G+L + ++ Sbjct: 208 LSKDSSDGIIVVGFSATLKRHDAQPLDKVFNTIAYEKDLISMVKEGYLSE-------LSI 260 Query: 660 NAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT--N 717 EG + +L+D + + D+ + + N A EL Sbjct: 261 TKVEGAF-------------------SLDDVKLDKTGDYQLQSLESSVNTAAVAELVLKT 301 Query: 718 YLD---PTGSQKTLVFCVTNAHADMVVE-----ELRAAF-KKKYPQLEHDAIIKITGDAD 768 YL+ G + +L FCV H + E ++A F P LE + IIK Sbjct: 302 YLERKKVLGLKSSLFFCVNKQHVQDLCELFCANGIKAGFVSGNTPLLEREQIIK------ 355 Query: 769 KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 F +L N+++ ++ T G DIP+I +I LR +SR L QM GR Sbjct: 356 -----------NFIDGKL-NVLMNCNVFTEGTDIPNIDSIFLLRPTKSRPLLSQMIGRGL 403 Query: 829 RL 830 RL Sbjct: 404 RL 405 >UniRef50_Q12MF5 Type III restriction enzyme, res subunit n=21 Tax=Shewanella RepID=Q12MF5_SHEDO Length = 616 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 114/443 (25%), Positives = 182/443 (41%), Gaps = 82/443 (18%) Query: 435 ADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRF 494 A NP + LR YQ+DAV A + + +L + TG GK+ IA + R+ + Sbjct: 31 ATNP----IQLRNYQQDAVDATINHFKRSKDSAVLVLPTGAGKS-IVIAELARIAKGN-- 83 Query: 495 KRILFLVDRRSLGE---QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQS 551 +L L + L E Q +G ++ SI+ GL K + T VA++QS Sbjct: 84 --VLVLTHVKELVEQNAQKVGLLTES-------ASIYS-AGLKQKKAQGKTV--VASIQS 131 Query: 552 LVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD 611 + + + + +++DE HR + E+T Q SQL + ++L Sbjct: 132 AARAVERFSQ-----GFSLVIIDECHR---VSTEKTSQYQQLLSQLIKQNPKLKLL---- 179 Query: 612 AVKIALTATPALHTVQIFGEPVYRYTYRTAV--IDGFLIDQ---DPPIQIITRNAQEGVY 666 LTATP ++ VYR+ Y V D + + D P++ + + Y Sbjct: 180 ----GLTATP----YRLGSGYVYRHHYHGKVGNTDNPVFENCIFDLPMRPLIKQG----Y 227 Query: 667 LSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA-FNRAVCNELTNYLDPTGSQ 725 L++ + + +S Q + + D ++ A+ + L +A+ ++ + + Sbjct: 228 LTEPKIFDGLSAQYDFNALSPSDTGEYPQAEVDALLKHQGRATKAIIKQVKQVAEL--RR 285 Query: 726 KTLVFCVTNAHADMVVEEL---RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFN 782 L+F T HA ++ L A P LE D I I+RF Sbjct: 286 GVLIFAATVRHAQEIMTYLDDSAALITATTPHLERDDI-----------------ISRFK 328 Query: 783 KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIF 842 E L +V V +LTTG D P + I LR S L++QM GR RL P NKT Sbjct: 329 TESL-RYIVNVAVLTTGFDAPHVDLIAILRPTASISLFQQMIGRGLRLAP--NKT----- 380 Query: 843 DCVDIYSTLESVDTMRPVVVRPK 865 DC+ I D P V + K Sbjct: 381 DCLVIDYAANGYDLYYPEVGQAK 403 >UniRef50_C6I028 Putative helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I028_9BACT Length = 1039 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 110/408 (26%), Positives = 162/408 (39%), Gaps = 75/408 (18%) Query: 448 YQEDAVR--AVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRS 505 +QE+ + AVE+ V G+ + L+ ATGTGKT A RL + R+LF+ RR Sbjct: 305 FQEEILEKLAVERE-VHGRTKNLVVAATGTGKTVIAALDFRRLREKMPRARLLFVAHRRE 363 Query: 506 LGEQALGAFEDTRINGD-TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 + EQ+L F R GD F I L D P S + V +VQ L R+L Sbjct: 364 ILEQSLLTFR--RALGDPNFGRIL----LPDGPPGGSEHLFV-SVQLLASRSL------- 409 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATP-- 621 D + D + ++ E GE YRR+L + + LTATP Sbjct: 410 ---LDSLSPD--YFDVVVVDEVHHGE---------APTYRRLLSRLSPRILLGLTATPER 455 Query: 622 --ALHTVQIF-GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 L F G A+ G L+ P Y + V+ S Sbjct: 456 SDGLDIRSWFDGRIAAEIRLPEAIGRGLLV----PFH----------YFGVSDSVDYRSV 501 Query: 679 QGEVINDTLED-DQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHA 737 + E L D D D G+++ A ++NYL + L FCV+ HA Sbjct: 502 RWERGRYNLSDLDNVITGDDLRAGIILKA--------VSNYLSDPRKARGLGFCVSVNHA 553 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 + E A L +A+ A + + + + +R + L + + TVDL Sbjct: 554 IRMAEIFNRA------GLPSEAL-----HAGTPSDRRERVRSRLSNGEL-SFLFTVDLFN 601 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 GVDIP + ++FLR S ++ Q GR RL P K + D + Sbjct: 602 EGVDIPEVDTVLFLRPTESLTVFLQQLGRGLRLFP--GKEVLTVLDFI 647 >UniRef50_Q6M621 Predicted HKD family nuclease n=5 Tax=Corynebacterium RepID=Q6M621_CORGL Length = 971 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 107/447 (23%), Positives = 172/447 (38%), Gaps = 77/447 (17%) Query: 411 PEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 PEW E + QN D + QE+A+ A+ KG++ ++ Sbjct: 180 PEWISEYEATRRVPERLVSQNIPLEDQSNAGTIVPNVMQEEALDALLSLTEKGEKRGVII 239 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDI 530 ATGTGKT A A+ R+++ + R+LF+V R + ++A F D Sbjct: 240 SATGTGKTILA-ALATRMLKPE---RVLFVVHREQILDKARSEFIKV-----LERPAVDF 290 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKR-TLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 ++ E T+Q+L K TL P +D ++VDE HR Sbjct: 291 GKMSGSTKELDKPFVFGTIQTLTKEATLSQISP---TDFDLVIVDEVHRA---------- 337 Query: 590 ELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQIFGEPVYRYTYRTAVIDGF-- 646 +Y +L+H + LTATP RT DGF Sbjct: 338 ---------GAESYLALLNHLQPQFLLGLTATPE----------------RT---DGFNI 369 Query: 647 --LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNR--GL 702 L D + P +I + A E L V + TL D + V D ++ L Sbjct: 370 YELFDFNVPYEIRLQAALESNMLVPFHYY-------GVTDFTL--DSETTVTDTSKLSAL 420 Query: 703 VIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 V + L Y P + + L+FC A EEL + L + +++K Sbjct: 421 VSEERVHHILEALKTYGHPE-NVRGLIFCSKTEEA----EELSKLLDQS---LFNGSLLK 472 Query: 763 ITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 + KD+ + + + + ++TVD+ G+DIPS+ IV +R +S I++ Q Sbjct: 473 TKALSAKDSIPYREEVVAELESGDLDYILTVDIFNEGIDIPSVNQIVMIRSTQSSIVFTQ 532 Query: 823 MKGRATRLCPEVNKTSFKIFDCVDIYS 849 GR R K ++ D + Y+ Sbjct: 533 QLGRGLRKA--AGKDHLRVIDFIGNYA 557 >UniRef50_C8X332 Type III restriction protein res subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X332_DESRD Length = 979 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 86/368 (23%), Positives = 143/368 (38%), Gaps = 75/368 (20%) Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIK 531 ATG GKT A F IQS + + LF+ R + +A +F + + G IF Sbjct: 389 ATGVGKTYLA---AFDFIQSGK-DKCLFIAHREDILRKAKESF--SHVLGPEGLEIF--S 440 Query: 532 GLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGEL 591 G + + S + A +Q+L ++ + E +D IV+DE H Sbjct: 441 GRSKEISHGSRAV-FAMIQTLGRQ--DNMERFHPEEFDYIVMDEFHHAM----------- 486 Query: 592 QFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQ 650 + YRR+LD+F + LTATP +D Sbjct: 487 --------AATYRRVLDYFQPDFLLGLTATPER------------------------MDG 514 Query: 651 DPPIQIITRNAQEGVYLSKGEQVERISP-QGEVINDTLEDDQ------DFEVADFNRGLV 703 + + N + L + E ++P Q ++D + Q D++ + + L Sbjct: 515 RDVLWLCDYNIAYEMRLFQAIDKELLAPFQYFAVHDPTDYAQISWKRTDYDQEELTKALA 574 Query: 704 IPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD-AIIK 762 + N L +L G K L FC + HA L EHD + Sbjct: 575 NDTRTTIIANNLKKFLPYQGKIKALAFCSSVDHAQYTAARLTQ---------EHDFEAMA 625 Query: 763 ITGDADKDARKVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 + GD+ +D R + + R +E P ++ VD+ G+DIP + +++ LR +S ++ Sbjct: 626 LVGDSSQDQR--EEAVARLEEENDPLKLICCVDIFNEGIDIPKLSHVLLLRPTQSFTVFL 683 Query: 822 QMKGRATR 829 Q GR R Sbjct: 684 QQLGRGLR 691 >UniRef50_B1YFS4 Type III restriction protein res subunit n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YFS4_EXIS2 Length = 1052 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 99/396 (25%), Positives = 155/396 (39%), Gaps = 84/396 (21%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q A+ + + +K Q + ++ ATGTGKT A F + Q KR+LF+ R L Sbjct: 302 QLPALEQLHRLRLKQQTKAMVIAATGTGKTYLA---AFDVKQFDA-KRVLFVAHRGKLLS 357 Query: 509 QALGAFEDTRINGD-TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRT-LQSDEPMPVA 566 QA F+ +GD TF + DK + AT+Q+ K L+ +P Sbjct: 358 QAEETFKKIFTDGDATFGRYQANQKDLDK------QFIFATIQTFSKEIHLEQFDP---N 408 Query: 567 RYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPA-LH 624 +D I++DE H +Y++IL++F + +TATP + Sbjct: 409 TFDYIIIDEFHHAA-------------------SESYQKILNYFTPQFLLGITATPERMD 449 Query: 625 TVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN 684 + IF + Y + D D P E + Sbjct: 450 GLNIFKLVDHNIAYEIRLYDALAQDLLTPFHYFGIQDDEAI------------------- 490 Query: 685 DTLEDDQDFEVADFNRGL-----VIPAFNRA-----VCNELTNYLDPTGSQKTLVFCVTN 734 D+EV GL ++ A R+ + +T + ++ L FCV Sbjct: 491 -------DYEVIPQKNGLYIEKDLVEALERSSRTEYILEMMTKFGHSGTARVGLGFCVNI 543 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLP-NIVVTV 793 HA E + A F K Q+E AI +A+++ I R ++ P + + TV Sbjct: 544 DHA----EYMAAEFNKH--QIESLAITSKQTEAEREH-----AIQRLEDDQDPLSFIFTV 592 Query: 794 DLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 DL GVDIP I ++FLR S ++ Q GR R Sbjct: 593 DLFNEGVDIPKINVMLFLRPTESPTIFIQQLGRGLR 628 >UniRef50_C5VVF7 Type I restriction-modification system, restriction protein n=8 Tax=Bacilli RepID=C5VVF7_STRSE Length = 1017 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 92/415 (22%), Positives = 168/415 (40%), Gaps = 75/415 (18%) Query: 436 DNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK 495 D + + +RY Q A +A+E+ + +G ++ ++ G+GKT A R ++ K Sbjct: 293 DQIQLQKHAMRYPQYFATKAIERGLEEGMKKGVIWHTQGSGKTALAF-FNIRYLRDFYAK 351 Query: 496 R-----ILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQ 550 R F+VDR L +QA F + N ++ + +D + V +Q Sbjct: 352 RGVVPQFYFVVDRLDLADQAYKEFSKRGLKVKRINKPSELNQI-----QDQHHVSVVNIQ 406 Query: 551 SLVKRTLQSDEP-MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDH 609 + + +D + R + +DEAHR Y + +Y L + Sbjct: 407 KFKESSDLTDHSGYDLNRQNIYFIDEAHRSY-----------------NEKGSYLPNLYN 449 Query: 610 FD--AVKIALTATP-------------ALHTVQIFGEPVYRYTYRTAVIDGF---LIDQD 651 D AVKIALT TP A+ T IFG+ +++Y Y ++ DGF L+ +D Sbjct: 450 ADKEAVKIALTGTPLIATKADGKTKETAVTTRDIFGDYIHKYYYNQSIADGFTLRLMRED 509 Query: 652 PPIQIITRNAQEGVY--LSKGE-QVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 I+ + + V+ + KG + + I ++ L DF + DF R I + Sbjct: 510 --IETSYKETLQAVHEEIQKGSIEKKEIFAHPRYVSPML----DFILDDFTRAREILFGD 563 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDAD 768 +++ +V C ++ A + ++L K I+ GD + Sbjct: 564 QSIGG--------------MVVCDSSEQARELHKQLEDRRKAGLTSFTSTLILHDAGDKE 609 Query: 769 KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQM 823 +V K+ L + V+ +L TG D P + + RK+++ L + + Sbjct: 610 YKKEEVDKF-----KDGLIDFVIVYSMLLTGFDAPRLKRLYLGRKIKAHNLLQTL 659 >UniRef50_Q4P241 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P241_USTMA Length = 775 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 97/441 (21%), Positives = 165/441 (37%), Gaps = 92/441 (20%) Query: 435 ADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLI--QSQ 492 AD+ LR YQE+ ++ A+ G I ++ TG+GKT ++ RL Sbjct: 80 ADDSAAPAFSLRPYQEECIQDCLSALDCGVTRIGVSSPTGSGKTTIFTHLIDRLPPRSDT 139 Query: 493 RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIH------- 545 +R+ +V+ L QA A +T FPE S +I Sbjct: 140 GGQRVAIIVNSIELALQAANA-------------------VTSMFPEKSVEIEQGSKYRA 180 Query: 546 -------VATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLD 598 VAT Q+L R+ Q + + +VVDEAH Sbjct: 181 SGMADVTVATYQTL-NRSQQRLDKFDPDEFKAVVVDEAHHAA------------------ 221 Query: 599 YVSAYRRILDHFDA-VKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQII 657 +Y ++L HFD + + L +V PV ++ + DG + + + Sbjct: 222 -APSYLKVLSHFDPLIGLGLEQRQGQCSVPTASVPVIGFSATFSRHDGLALGKVFDRIVF 280 Query: 658 TRNAQEGVYLSKGEQ----VERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCN 713 ++ E + GE+ + S + ++ D ++++ N + V Sbjct: 281 HKDFLEMI----GEKWLCPIRFTSIKADI------DLASVKISNLNSDFATSSLAAVVNT 330 Query: 714 ELTN------YLDPTGSQK--TLVFCVTNAHADMVVEELRAA-FKKKYPQLEHDAIIKIT 764 E+ N ++D + TL+F V H + R+A +Y + Sbjct: 331 EVVNKIILKAWIDRAHKHRRSTLIFAVNIEHVQELTNTFRSAGIDARY----------LH 380 Query: 765 GDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMK 824 G R+ ++ F P ++V +LT G D+P+I ++ R RSR L+ QM Sbjct: 381 GGTPMPERR--QLLEDFRNGVYP-VLVNCAILTEGADVPAIDCVLLARPTRSRNLFSQMI 437 Query: 825 GRATRLCPEVNKTSFKIFDCV 845 GR RL P+ K + D V Sbjct: 438 GRGLRLSPKTGKKDCLVLDIV 458 >UniRef50_A3EQ89 Putative helicase n=1 Tax=Leptospirillum rubarum RepID=A3EQ89_9BACT Length = 1054 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 101/405 (24%), Positives = 153/405 (37%), Gaps = 97/405 (23%) Query: 461 VKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRF-KRILFLVDRRSLGEQALGAFEDTRI 519 V G L+ ATGTGKT A A FR + +R LF+ R+ + EQ+L Sbjct: 336 VNGSFRNLVVSATGTGKTVIA-AFDFRRFREKRPDATFLFVAHRKEILEQSL-------- 386 Query: 520 NGDTFNSIFDIKGLTDKFPEDSTKIHV----ATVQSLVKRTLQSDEPMPVARYDCIVVDE 575 F I + + + + S +HV A++QSL + L P R+D +V+DE Sbjct: 387 --KHFRHILEDRNFGELWVAGSRPVHVRHVFASIQSLDRAELDRISP---ERFDYVVIDE 441 Query: 576 AHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQIFGEPVY 634 H G YRR+L+ + + LTATP G V Sbjct: 442 IHHG-------------------MAPTYRRLLETLKPRILLGLTATPERSD----GLDVR 478 Query: 635 RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVER--ISPQGEVINDTLEDDQD 692 RY N + + GE ++R + P + D+ D Sbjct: 479 RYF----------------------NDRTAAEIRLGEAIDRNLLCPFHYF---GITDEVD 513 Query: 693 FEVADFNRGL--------VIPA---FNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVV 741 + + RG V+ NR+V L Y + + FCV HA Sbjct: 514 YRNLRWERGQYDRRELEKVLTGNDLRNRSVLRALREYCPDLSGVRGIGFCVGVRHA---- 569 Query: 742 EELRAAFKKK-YPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGV 800 EE+ F + P I ++ D+ ++ R + R + L V VDL G+ Sbjct: 570 EEMSDLFNRAGIPS------IALSADSSREVRDAVS--ARISSGEL-TFVFVVDLYNEGI 620 Query: 801 DIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 DIP++ ++FLR S ++ Q GR R KT + D V Sbjct: 621 DIPAVDTVLFLRPTESLTIFLQQLGRGLR--QRWGKTHLTVLDFV 663 >UniRef50_Q1PKZ5 DNA repair helicase rad25 n=2 Tax=cellular organisms RepID=Q1PKZ5_PROMA Length = 976 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 111/450 (24%), Positives = 179/450 (39%), Gaps = 105/450 (23%) Query: 403 TRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP--GMSELGLRYYQEDAVRAVEKAI 460 TR SK + R E + E ++ NQ + S + Q++A+ +E Sbjct: 176 TRYFSKGIKVSERFLNEYEQVYGEIKRVNQSVSTKKIDKFSPIEPNVMQKEALINLENLR 235 Query: 461 VKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRF--KRILFLVDRRSLGEQALGAFE--- 515 ++ LL AT TGKT + ++ F KR+LF+V R ++ ++A+ +FE Sbjct: 236 RANVKKALLISATATGKTYLSA------FDAKNFNAKRVLFIVHRWNIAKKAMESFEKIF 289 Query: 516 -DTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVD 574 D R G SI DI F ST + ++ Q+L K +D I++D Sbjct: 290 GDERTYGLYKGSINDI-NFDFIF---STNLTISNSQNLNK--------FSPDFFDYIIID 337 Query: 575 EAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALHTVQIFGEPV 633 E HR S Y++I+++F + +TA+P Sbjct: 338 ETHRAG-------------------ASTYQKIINYFSPKFLLGMTASPE----------- 367 Query: 634 YRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDF 693 RT DGF I ++ N + L K + E + P F Sbjct: 368 -----RT---DGFDI-----FKLFDHNIAYEIRLQKAMEAELVVPF-----------HYF 403 Query: 694 EVADFN-RGLVI---PAFNRAVCNE----LTNYLDPTGSQ----KTLVFCVTNAHADMVV 741 + D N G +I FN+ +C+E + + D G + +VFC A Sbjct: 404 GITDLNINGEIIDEKSDFNKLICDERVERILDISDKYGCDDNIIRGIVFCSRKDEA---- 459 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARK--VQTMITRFNKERLPNIVVTVDLLTTG 799 EL F L+ I +TG +D R+ +Q + + +E+L + VD+ G Sbjct: 460 YELANKF-----NLKGRKSITLTGSQSEDERENAIQQLESDNLEEKLE-FIFAVDIFNEG 513 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATR 829 +DIP I I+ LR +S I++ Q GR R Sbjct: 514 IDIPRINQIIMLRPTQSNIIFIQQLGRGLR 543 >UniRef50_D2LJT9 Type III restriction protein res subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJT9_RHOVA Length = 473 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 96/409 (23%), Positives = 153/409 (37%), Gaps = 87/409 (21%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 LR YQ + A+ + + +L+ + TG GKT AIA ++R KR++F Sbjct: 3 FALRPYQAKLITDTRDAL-REAKSVLVQLPTGGGKT--AIAAYMAGSAAKRKKRVVFGCH 59 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 RR L +Q + F+ G F I D P+ I +A++ +L KR + P Sbjct: 60 RRELIKQTMKTFQKV---GIPFGVI-----AADFTPDPRQPIQIASIPTLAKRLDRYPAP 111 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF---DAVKIALTA 619 D V DEAH + + ++D F + L+A Sbjct: 112 ------DLYVPDEAHHAG-------------------AATWAEVIDSFARRGTKTVGLSA 146 Query: 620 TP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVER 675 TP + F VY + + +GFL P ++ Sbjct: 147 TPERLDGTGLGRWFDTMVYGPSTAWLIENGFL----SPYRLF------------------ 184 Query: 676 ISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNA 735 +P + DF A A N + +Y ++ +VFCV+ Sbjct: 185 -APGTIDVTGIKRTAGDFNKAALEERASTSAIT---GNAVEHYARFARGRRAMVFCVSIK 240 Query: 736 HADMVVEELRAA-FKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 H+ VVE +AA F+ + D + +I F ++ I+ +VD Sbjct: 241 HSMSVVERFQAAGFRAAH--------------IDGKSENRDELIAAFETGQI-QILCSVD 285 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 L++ G D+P++ + LR +S LY Q GRA R P KT I D Sbjct: 286 LVSEGFDLPALECAILLRPTQSLALYLQQVGRALRTHP--GKTEAIILD 332 >UniRef50_B3RW31 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RW31_TRIAD Length = 607 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 28/198 (14%) Query: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKK 751 DF V+ + + P N + N+ D + TLVF HA + E R + K+ Sbjct: 195 DFVVSQLVKQINTPERNNTIVKAWLNHKD--NFKSTLVFSANRQHAKDLTEAFRLSGKEA 252 Query: 752 YPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFL 811 + + G D R +++ F +++ P +++ + T G DIP I I+ Sbjct: 253 H---------LVDGQTPSDDRA--ELVSNFKEQKFP-VMINCGVFTEGTDIPCIDCIILA 300 Query: 812 RKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYS-----TLESVDTMRPV------ 860 R RS L++QM GR R P+ K +FDC D +S TL S+ + P Sbjct: 301 RPTRSSTLFQQMVGRGLRTFPD--KEYCTVFDCFDNFSGCDIVTLPSLVGLPPNFNCEGQ 358 Query: 861 -VVRPKVELQTLVNEITD 877 +V+ E+Q+L TD Sbjct: 359 DLVKVHHEMQSLSENNTD 376 >UniRef50_C0GPL2 Type III restriction protein res subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GPL2_9DELT Length = 978 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 89/392 (22%), Positives = 152/392 (38%), Gaps = 77/392 (19%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q +A+ ++K + + + ATG GKT A F IQS + + LF+ R + Sbjct: 365 QSEALEGLKKLRTRKARSGAVIAATGVGKTYLA---AFDFIQSGK-DKCLFIAHREDILR 420 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKR-TLQSDEPMPVAR 567 +A +F + + G IF + + +K A +Q+L ++ ++ P Sbjct: 421 KARESF--SHVLGPEGLEIFSGRSKDVSY---GSKAVFAMIQTLGRQGNMKRFHPR---E 472 Query: 568 YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTV 626 +D IV+DE H + YR++LD+F + LTATP Sbjct: 473 FDYIVMDEFHHAM-------------------ANTYRKVLDYFQPDFLLGLTATPER--- 510 Query: 627 QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP-QGEVIND 685 +D + + N + L + E ++P Q ++D Sbjct: 511 ---------------------MDGRDVLWLCDYNIAYEMRLFQAIDKELLAPFQYFAVHD 549 Query: 686 TLEDDQ------DFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADM 739 + Q D++ + L + N L +L G K L FC + HA Sbjct: 550 PTDYAQIAWKRTDYDQEELTMALANDTRTALIANNLKKFLPYQGKIKALAFCSSVDHAHY 609 Query: 740 VVEELRAAFKKKYPQLEHD-AIIKITGDADKDARKVQTMITRFNKERLP-NIVVTVDLLT 797 L EH + GD+ ++ R + +I R KE P ++ VD+ Sbjct: 610 TANRLTQ---------EHGFEATALVGDSSQEQR--EKVIARLEKENDPLKVICCVDIFN 658 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 GVDIPS+ +++ LR +S ++ Q GR R Sbjct: 659 EGVDIPSLSHVLLLRPTQSFTVFLQQIGRGLR 690 >UniRef50_B1XZH6 Type III restriction protein res subunit n=2 Tax=Proteobacteria RepID=B1XZH6_LEPCP Length = 1058 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 105/444 (23%), Positives = 175/444 (39%), Gaps = 93/444 (20%) Query: 424 GSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIA 483 G EP +F P + YQ++ + + G+ LL ATGTGKT A A Sbjct: 317 GGEPTATISFFDLQP-------KTYQQEMLEQLITERSHGRNRNLLVAATGTGKTVVA-A 368 Query: 484 MMFR---LIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED 540 +R ++ R R+LF+ R + QAL + + + F + +++ Sbjct: 369 FDYRNTCRVEGGR-PRLLFVAHREEILRQALRTYREV-LRDPEFGDLLTGGNQPERWDHL 426 Query: 541 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 I T + LV T+ +D + +VVDE HR L ++ + +V Sbjct: 427 FATIDSVTSRDLVT-TVGADH------WHTVVVDECHR---LAADRFDA---------FV 467 Query: 601 SAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 + R +V + LTATP G+P+ +Y A DG P I++ + Sbjct: 468 KSVR------PSVLLGLTATPERSD----GQPIAQYF--DARPDG-----SPAIELRLWH 510 Query: 661 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN----------RA 710 A + L+ E +D DF +++ A + R Sbjct: 511 ALDLQLLAPFEYY------------ACDDGTDFSAVPWDKPGEREAVDKLVTGNDVRARL 558 Query: 711 VCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKD 770 V NE + + +VFCV+ AHA+ + + A L ++ T ++ Sbjct: 559 VVNEWRRLASDASTSRAIVFCVSVAHAEFMTDRFNRA------GLPAACVVGTTAIEER- 611 Query: 771 ARKVQTMITRFNKERLPN----IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 R +RL + +VTVDL G+D+P + ++ LR +S +L++Q GR Sbjct: 612 ---------RRAPQRLLSGELCALVTVDLYNEGIDLPMVDTLLLLRPTQSPVLFQQQIGR 662 Query: 827 ATRLCPEVNKTSFKIFDCVDIYST 850 RL P K S + D V + T Sbjct: 663 GLRLAP--GKESCLVLDFVGQHRT 684 >UniRef50_A0JTK4 Type III restriction enzyme, res subunit n=17 Tax=Actinomycetales RepID=A0JTK4_ARTS2 Length = 1063 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 97/378 (25%), Positives = 153/378 (40%), Gaps = 73/378 (19%) Query: 462 KGQQEILLAMATGTGKTRTAIAMMFRLIQSQ-RFKRILFLVDRRSLGEQALGAFEDTRIN 520 KG LL ATGTGKT A RL ++ R ++LF+ R+ + +QA+ + D + Sbjct: 342 KGFNHNLLVAATGTGKTVIAALDYKRLCEAAGRDLKLLFVAHRQEILKQAMRTYRDVMQD 401 Query: 521 GDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGY 580 G F ++ + + P I A+VQSL ++ EP +D +V+DE H Sbjct: 402 G-AFGELY----VGEHKPAQWKHI-FASVQSLSSLGIEQLEP---DFFDVVVIDEFHHA- 451 Query: 581 ILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-IALTATP----ALHTVQIFGEPVYR 635 YRR+LDH + + LTATP + + F Sbjct: 452 ------------------MAPTYRRLLDHLQPQQLLGLTATPERGDGVDVAKQF------ 487 Query: 636 YTYRTA----VIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ 691 + RTA + D +D D + + V LS+ E +G DT + + Sbjct: 488 FDGRTASELRLWDA--LDADLLVPFHYFGVSDDVDLSQLEW-----KRGNY--DTTQLNN 538 Query: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKK 751 + D VI EL + + T + + FCV+ HA + E A Sbjct: 539 LYTGNDARAAKVI--------RELRDKVTSTDQMRAIGFCVSVQHAHYMAEVFNRA---- 586 Query: 752 YPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFL 811 + A+ T DAD+ A + R + + N + VDL G+D+P + I+ L Sbjct: 587 --GIASVAVDGSTDDADRAA-----ALERLRRREI-NCIFAVDLYNEGLDLPQVDTILLL 638 Query: 812 RKVRSRILYEQMKGRATR 829 R +S ++ Q GR R Sbjct: 639 RPTQSATIFLQQLGRGLR 656 >UniRef50_C8WYC9 Type III restriction protein res subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WYC9_ALIAD Length = 581 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 105/408 (25%), Positives = 166/408 (40%), Gaps = 78/408 (19%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQS-QRFKRILFLVDR 503 LR YQ+ AV A +A+ +G++ L+ + TG GKT ++ R + R + IL + R Sbjct: 5 LRPYQQAAVDAFFQALAEGRKRQLIVLPTGAGKTIVFGSVARRFHEEVSRERPILVIAHR 64 Query: 504 RSLGEQALGAFEDTRIN---GDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK-RTLQS 559 L +QA + +I+ + F I I+G + E + +A+ Q+LV R + Sbjct: 65 TELLDQA-----EQKIHFVWPEAF--IGRIQGARN---EQLGDVLLASTQTLVAGRRI-- 112 Query: 560 DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTA 619 P P I+ DE H + EG L +L + + + +TA Sbjct: 113 --PQP----GLIIYDECH------HSRAEGALGVLERLG-------VFESDGPPLLGVTA 153 Query: 620 TPA----LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVER 675 TP+ IF Y T ++DG+L D +G +VE Sbjct: 154 TPSRSDRTELGDIFEHLTYERTILDMIMDGYLSD------------------VRGVKVEV 195 Query: 676 ISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNA 735 I T D+ D + + I + AV + + + +K LVF V Sbjct: 196 PGLNLGAIRTTA---GDYNSKDLSYVMNIESALDAVVDAVVTH---APGRKCLVFAVDVK 249 Query: 736 HADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 HA + E F+K+ I D A + ++ F + RL ++V + Sbjct: 250 HAHALAER----FQKR-------GIACAAVDGAMKAEERAAILQAFAENRL-CVLVNCQI 297 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 LT G D P + +V R RS+ LY QM GRA RL P +KT + D Sbjct: 298 LTEGYDQPDVDCVVIARPTRSQALYVQMVGRALRLHP--DKTDALVLD 343 >UniRef50_Q5FLU2 Phage related helicase n=3 Tax=Lactobacillus acidophilus RepID=Q5FLU2_LACAC Length = 864 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 125/511 (24%), Positives = 206/511 (40%), Gaps = 121/511 (23%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q++A+ ++ G+ + L+ ATGTGKT +Q + KR L++V R + + Sbjct: 227 QKEALGEIQSLRQNGKNKALIISATGTGKTYLGAFD----VQKFKPKRFLYVVHREQILQ 282 Query: 509 QALGAFEDTRINGDTFNSIFDI---KGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP- 564 ++ +F D + I+ +GL K+ ATVQ+L K DE + Sbjct: 283 KSRNSFYDVIGGAYSDYGIYSGNHREGLKSKYI-------FATVQTLAK-----DENLKK 330 Query: 565 VAR--YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATP 621 AR +D I+ DEAH G +Q +L +I ++F + +TATP Sbjct: 331 FARDAFDYILFDEAHH---------LGSVQ---EL-------KIFNYFQPQFCLGMTATP 371 Query: 622 A-LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG 680 I+ Y Y + + +DQD ++ +Y Q Sbjct: 372 ERTDDFNIYKLFDYNIAYEIRLQNA--LDQDMLCPFHYYGVEDYIY------------QD 417 Query: 681 EVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL----DPTG-SQKTL---VFCV 732 E+IN + R V +E NY+ D G S +TL +FC Sbjct: 418 ELINGA------------------TSLKRLVSDERVNYILQQTDYYGYSGRTLHGLIFCS 459 Query: 733 TNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVT 792 A+++ E+L +K P L I G+ +K +K++ ++ +VT Sbjct: 460 RKKEAEILAEKLT---EKGCPALAISGTDSI-GEREKAVKKLEKGKVKY--------IVT 507 Query: 793 VDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLE 852 VD+ GVDIP I IV LR +S I++ Q GR R K + D V Y Sbjct: 508 VDVFNEGVDIPCINQIVLLRNTQSSIVFVQQLGRGLRKYK--GKDYLTVIDFVGNYDN-- 563 Query: 853 SVDTMRPVV-----------VRPKVELQ-----TLVN--EITDSETYKITEADGRSFAEH 894 + + PV VR K++L+ +L+N + S+ YK + Sbjct: 564 --NYLIPVALTGDKSHNRDQVRDKLDLEPIYGVSLINFTNVAKSQIYKSINHSNLTLKRK 621 Query: 895 SHEQLVAKLQRIIGLATFNRD-RSETIDKQV 924 E+ + + +R IG D ++E+ID +V Sbjct: 622 LREEYINE-KRKIGRVPLMYDLQNESIDCEV 651 >UniRef50_C2E648 Helicase n=4 Tax=Lactobacillus RepID=C2E648_LACJO Length = 970 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 106/394 (26%), Positives = 151/394 (38%), Gaps = 91/394 (23%) Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSI 527 L+ ATGTGKT A + + +RF LF+V R + E AL +F I Sbjct: 251 LIISATGTGKTYLG-AFDVKNFKPRRF---LFVVHREQILEDALESFHKVIGGTKKEYGI 306 Query: 528 F---DIKGLTDKFPEDSTKIHVATVQSLVK----RTLQSDEPMPVARYDCIVVDEAHR-G 579 F D G+ K+ AT Q+L K + DE +D ++ DEAH G Sbjct: 307 FSGNDQSGIKAKYV-------FATSQTLSKDINLKQFAKDE------FDYVMFDEAHHLG 353 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA-LHTVQIFGEPVYRYT 637 S Y +I ++F+ + +TATP IF Y Sbjct: 354 --------------------ASQYLKIFNYFEPKFCLGMTATPERTDDFNIFKLFDYHIA 393 Query: 638 YRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDT--LEDDQDFEV 695 Y + D P Q VE + VI+DT L D V Sbjct: 394 YEIRLQDALENKMLAPFQYYG--------------VEDYVYEDHVISDTSSLSD----LV 435 Query: 696 ADFNRGLVIPAFNRAVCNELTNYLDPTGS-QKTLVFCVTNAHADMVVEELRAAFKKKYPQ 754 AD +I E T Y +G L+FC N A EEL + ++K Q Sbjct: 436 ADERVDYII---------EQTKYYGYSGDILHGLIFCSRNKEA----EELAESLRQKGIQ 482 Query: 755 LEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKV 814 + ++G D + R ++ K ++ N +VTVD+ G+DIP I IV LR Sbjct: 483 AK-----SLSGKDDVETR--DEVVEELEKGKI-NYIVTVDIFNEGIDIPCINQIVLLRST 534 Query: 815 RSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIY 848 +S I++ Q GR R P K + D + Y Sbjct: 535 KSSIVFVQQLGRGLRKFP--GKDYLTVIDFIGAY 566 >UniRef50_C2CPV6 Type I restriction-modification system, restriction subunit (Fragment) n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CPV6_CORST Length = 447 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 5/64 (7%) Query: 788 NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIF 842 ++ V+VD+L TG+D+P + N+VF + V S + + QM GR TRLCP++ +K F IF Sbjct: 5 DVAVSVDMLDTGIDVPEVLNLVFFKPVHSPVKFWQMVGRGTRLCPDLFGPGADKQEFFIF 64 Query: 843 DCVD 846 D D Sbjct: 65 DYCD 68 >UniRef50_A4IPV6 DNA/RNA helicase n=15 Tax=Bacillaceae RepID=A4IPV6_GEOTN Length = 815 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 98/405 (24%), Positives = 151/405 (37%), Gaps = 106/405 (26%) Query: 446 RYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRS 505 R+ Q +A+ +E A +G + ++ MATG GK T +A F ++RF R+LF+ R Sbjct: 225 RFAQVEALERLEAAYEEGYDKAMVVMATGLGK--TYLAAFF----ARRFSRVLFIAHREE 278 Query: 506 LGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHV-ATVQSL-VKRTLQSDEPM 563 + QA +FE I T G+ D +D V A++ +L +K+ L S P Sbjct: 279 ILRQAKQSFECV-IPDRT-------AGIYDGHQKDGNADMVFASIFTLSMKKHLFSFRP- 329 Query: 564 PVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPA 622 +D IVVDE H +Y R+L +F + +TATP Sbjct: 330 --DSFDLIVVDEFHHA-------------------AARSYERVLRYFRPEFLLGITATPD 368 Query: 623 LH-TVQIF----GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 + ++ G YR + AV G+L P GVY Sbjct: 369 RNDNKDVYAICDGNVAYRIDFIEAVQRGWL----APFHYY------GVY----------- 407 Query: 678 PQGEVINDTLEDDQDFEVADF------NRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFC 731 DD D+ + L+ + + + +TLVFC Sbjct: 408 -----------DDTDYSQIKWLGSRYDEEELLQVQLREEMAENILRAWEQYKKTRTLVFC 456 Query: 732 VTNAHADMVVEELR------AAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKER 785 + AD + E R + K + I + + DA Sbjct: 457 SSIRQADFLCEYFRRRGYRTVSLHSKQTTIPRQQAIAMLEQCELDA-------------- 502 Query: 786 LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL 830 + TVDL GVDIPS+ ++F+R S ++ Q GR RL Sbjct: 503 ----IFTVDLFNEGVDIPSVDTLLFVRPTESLTVFTQQVGRGLRL 543 >UniRef50_A9UTX7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UTX7_MONBE Length = 457 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 99/424 (23%), Positives = 167/424 (39%), Gaps = 84/424 (19%) Query: 445 LRYYQEDAVRAVEKAIVKGQQE-ILLAMATGTGKTRTAIAMMFRL-IQSQRFKRILFLVD 502 L +Q D + A GQ + + ++M TG+GKT ++ RL + ++L L Sbjct: 67 LYQHQTDCIEQSLTAF--GQHDRVAVSMPTGSGKTVVFSHLLARLPAPTPSQHKVLVLAH 124 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 R L QA +I N DI+G D+ + VA+V +L + + Sbjct: 125 RTELLAQA-----KRQIEAHNPNLRVDIEGGHAHADVDAADVIVASVPTLGRPSSVRLSR 179 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF---------DAV 613 A + I++DEAH S Y+RIL HF D Sbjct: 180 FDPAEFKLIIIDEAHHAA-------------------ASTYKRILHHFFDENRSNPYDVK 220 Query: 614 KIALTATPALHTV----QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ---EGVY 666 +AT H +F Y + T + +GFL P++ + + + V Sbjct: 221 LWGCSATLQRHDGLGLDDVFDTIAYSVSLETLLDEGFL----APVRGMKVDVDLKLDQVR 276 Query: 667 LSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQK 726 + KGE ++ A+ +R + A N V + Y + Sbjct: 277 IRKGE---------------------YDPAELSRLVNTNAQNELVVEQWRRYCQ-NERRS 314 Query: 727 TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERL 786 TLVF V H V +L+ FK Q E +I +T +A++ + ++ F+ Sbjct: 315 TLVFGVDIRH----VLDLQEQFKSGGVQAE--SITSLTPNAER-----KRILQAFSDGEF 363 Query: 787 PNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD 846 P +++ +LT G D+P + ++ R RS L+ QM GR RL P+ K + D + Sbjct: 364 P-VLLNCTVLTEGTDLPCVDALIMARPTRSHTLFVQMLGRGLRLHPD--KKDCLVIDVAN 420 Query: 847 IYST 850 +++ Sbjct: 421 TFAS 424 >UniRef50_B0URL0 ATP-dependent exoDNAse (Exonuclease V) alpha subunit-like protein-helicase superfamily I member n=4 Tax=Proteobacteria RepID=B0URL0_HAES2 Length = 937 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 19/181 (10%) Query: 6 NFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQ--H 63 NF L+ + Y +A A ++ DP ++LIK+R F E L L+I +N+ Sbjct: 4 NFSPLQSIEPDLYRLAKDAGHHLHSDPQSSLIKLRCFTEQFVLLLCKQLHIELVDNESLS 63 Query: 64 DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHE--YHNDLNDAQMCLRLGFRLAVWYY-- 119 D +R+ +V I H LR GN+AVH H D ++ CLR + L W Y Sbjct: 64 DRMRKADFKTYVPKEIQQKLHLLRIAGNKAVHTSFSHLDFSEVADCLREAYLLGKWLYLN 123 Query: 120 RLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALN 179 R+ T Y P F+LP ++ +QL+Q + + ++ QK++A N Sbjct: 124 RVPTTCY----PDFILPSPNHSI---------EQLQQHILSLKEENKKLNEHSQKIIAEN 170 Query: 180 G 180 Sbjct: 171 A 171 >UniRef50_B9CN59 DNA/RNA helicase n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CN59_9ACTN Length = 865 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 98/386 (25%), Positives = 155/386 (40%), Gaps = 85/386 (22%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ +AV +V + G + LL+MATG GKT ++ R+ + R L L R Sbjct: 3 LRPYQVEAVESVFREWESGNRRTLLSMATGCGKTICFAEIVKRVAATG--GRSLILAHRG 60 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDS----TKIHVATVQSLVKRT-LQS 559 L EQA D ++ +K S ++ V +VQ+L+++ L + Sbjct: 61 ELLEQA----------ADKIQRTSGLESALEKAESTSLNSWARVTVGSVQTLMRQDRLNA 110 Query: 560 DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI-ALT 618 P R+D I+VDEAH Y RILDHF ++ +T Sbjct: 111 FAP---NRFDAIIVDEAHH-------------------TLAEGYIRILDHFKGARVLGVT 148 Query: 619 ATPALHTVQIFGEP----VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 AT + GE + Y A+ DG+L + + + + V ++ G+ Sbjct: 149 ATADRADKKDLGEVYDSIAFEYGIAQAIKDGYLCPIEAEMVPLELDVSS-VSVTHGDY-- 205 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 Q + D LE D +AD +V +R +T+VF Sbjct: 206 ----QAGQLGDALEPYLD-AIAD---AMVTRCQDR----------------RTVVF---- 237 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 + + AF +K L +I D + R + +++ FN+ + ++ Sbjct: 238 ----LPLVRTAKAFAEK---LNERGLIVCEVDGQSEDR--EEILSDFNRGKY-QVLCNSM 287 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILY 820 LLT G D PS+ IV LR +SR LY Sbjct: 288 LLTEGWDCPSVDCIVCLRPTKSRGLY 313 >UniRef50_C0VZ55 ATP-dependent helicase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZ55_9ACTO Length = 1087 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 91/384 (23%), Positives = 151/384 (39%), Gaps = 76/384 (19%) Query: 463 GQQEILLAMATGTGKTRTAIAMMFRLIQ-----SQRFKRILFLVDRRSLGEQALGAFED- 516 G LL ATGTGKT A RL + + R R LF+ R+ + +QA F D Sbjct: 345 GHHRNLLVAATGTGKTVIAALDYKRLRERFMKNTGRSPRTLFVAHRQEILKQARKTFIDV 404 Query: 517 TRIN--GDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVD 574 +++ G + F + L + + + A++QSL +TL E P +D I++D Sbjct: 405 VKVSNLGISTTDNFALNSLDSRLLAEHGNLVFASIQSLHSKTL---EGFPNDFFDLIIID 461 Query: 575 EAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-IALTATPALH-----TVQI 628 E H Y+++++HF + + LTATP V+ Sbjct: 462 EFHHA-------------------SAPTYKKLIEHFAPQELLGLTATPERGDGTNVAVEF 502 Query: 629 FGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ---EGVYLSKGEQVERISPQGEVIND 685 F R + D D P + V LSKGE Sbjct: 503 FSG---RIASELRLWDALNADLLVPFHYFVNSDDTDLSKVRLSKGEY------------- 546 Query: 686 TLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELR 745 ++ D V + +R +I RA+ +++ + + + + FC + HA+ + + Sbjct: 547 DVKSLNDLYVGNEHRADII---MRAIRDKVPS----PDTMRAICFCASVEHANYMAD--- 596 Query: 746 AAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSI 805 F + L A+ T + D T IT + L ++ VD+ GVDIP + Sbjct: 597 -CFNRV--NLPAAAVTAKTENRD-------THITALREGTL-RVICAVDIFNEGVDIPEV 645 Query: 806 CNIVFLRKVRSRILYEQMKGRATR 829 ++ LR +S ++ Q GR R Sbjct: 646 DTLLMLRPTQSSTIFLQQLGRGLR 669 >UniRef50_Q14JJ7 DNA/RNA helicase n=18 Tax=Francisella RepID=Q14JJ7_FRAT1 Length = 913 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 98/386 (25%), Positives = 153/386 (39%), Gaps = 78/386 (20%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q +A+ ++ + G+ + L+ ATGTGKT + F I S + KR LF+V R ++ Sbjct: 193 QCEALESLRQLRDSGKNKALIISATGTGKTFLS---AFD-IASIKPKRCLFVVHRTNIAI 248 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY 568 +A F I+ T GL + S + ATVQ+L + ++ + Sbjct: 249 KAQETFAKV-ISDKTL-------GLYTGGNKTSAEYLFATVQTLKNSKVLAN--FKSQEF 298 Query: 569 DCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALH-TV 626 + I++DE H E E +Y+++L HF + +TATP Sbjct: 299 EYIIIDEVHHA--------EAE-----------SYKKVLAHFTPKFLLGMTATPERSDAA 339 Query: 627 QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDT 686 IF Y Y + D P A E +YL E + + Sbjct: 340 DIFKLFDYNIAYEIRLHQALEQDLLCPFHYF---AVEDLYLESEEILAK----------- 385 Query: 687 LEDDQDFE--VADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL 744 +F V+D +I E N+ +G + + V+N +EL Sbjct: 386 -----NFAKLVSDVRVEHII---------EKINFYGYSGQSRAALMFVSNVDE---AKEL 428 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDARKV-QTMITRFNKERLPNIVVTVDLLTTGVDIP 803 F K IK + +D+ ++ QT I + L I+VTVD+ GVDIP Sbjct: 429 ATKFSNKG--------IKAKALSSQDSEQIRQTTIAQLESGELE-IIVTVDIFNEGVDIP 479 Query: 804 SICNIVFLRKVRSRILYEQMKGRATR 829 I I+ LR +S I+Y Q GR R Sbjct: 480 CINQIILLRPTQSAIVYIQQLGRGLR 505 >UniRef50_Q7UED5 Putative helicase n=2 Tax=Planctomycetaceae RepID=Q7UED5_RHOBA Length = 1071 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 92/393 (23%), Positives = 150/393 (38%), Gaps = 72/393 (18%) Query: 461 VKGQQEILLAMATGTGKTRTAIAMMFRLI-QSQRFKRILFLVDRRSLGEQALGAFEDTRI 519 V+ + L+ ATGTGKT A R+ ++ R R+LF+ R+ + QA+ AF + Sbjct: 371 VQNKYRHLIVAATGTGKTMIAAFDYARVAREAGRKPRLLFIAHRKEILSQAMVAFRCV-L 429 Query: 520 NGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRG 579 F + L D + + ++QS R LQ + +++ +VVDE H Sbjct: 430 RDQNFGDL-----LVDGSQPEQHEHLFCSIQSYNSRNLQMES---AEQFEYVVVDEFHHA 481 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATP----ALHTVQIFGEPVY 634 +Y+ +L+H + + LTATP L + FG Sbjct: 482 A-------------------APSYQSLLEHVQPQILLGLTATPERSDQLDVLSWFGG--- 519 Query: 635 RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ--GEVINDTLEDDQD 692 R + + D P Q +S ++ ++ Q G I+D D+ Sbjct: 520 RASAEIRLPDAISRRLLCPFQYFG--------ISDAVDLDGLTWQRGGYRIDDL---DRL 568 Query: 693 FEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKY 752 + D LV V + + + L FC + AHA+ F ++ Sbjct: 569 YTGNDVRAKLVFEKVAETVLD--------SQDVRGLAFCCSVAHAE---------FMARF 611 Query: 753 PQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLR 812 I ++ + D R R ER N + VDL G+DIP + ++FLR Sbjct: 612 FDENGIPSIALSASSTNDERNSAQQRLR---ERSVNFIFVVDLYNEGIDIPEVDTVLFLR 668 Query: 813 KVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 S ++ Q GR RL PE K + D + Sbjct: 669 PTESLTVFLQQLGRGLRLHPE--KECLTVLDFI 699 >UniRef50_Q31QB2 DEAD/DEAH box helicase-like n=2 Tax=Synechococcus elongatus RepID=Q31QB2_SYNE7 Length = 469 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 104/414 (25%), Positives = 158/414 (38%), Gaps = 84/414 (20%) Query: 440 MSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILF 499 M+ LR YQ+ V + + G + L+AM TG GK TA+ L + + KR L Sbjct: 1 MTPFELRDYQQQVVEELRHSYATGHRSPLVAMPTGAGK--TAVFSYISLQSAAKQKRTLI 58 Query: 500 LVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS 559 LV R+ L QA + + + S F +P VA+VQ+LV+R + Sbjct: 59 LVHRKELLLQASRSLDRLGVRHGLIASGFSWM----PYP-----TQVASVQTLVRRLDRL 109 Query: 560 D-EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALT 618 D EP + IVVDEAH + + T G++ +SAY R + + +T Sbjct: 110 DWEP------ELIVVDEAHH---VVPDNTWGKV--------LSAYPR------SRVLGVT 146 Query: 619 ATPALHTVQ----IFGEPVYRYTYRTAVIDGFLIDQD---PPIQIITRNAQEGVYLSKGE 671 ATP + +F + + T GFL PPIQ GV + G+ Sbjct: 147 ATPCRTDGRGLGDVFDDLIIGPTIAELTERGFLCPTKIYAPPIQ----ADLTGVRMRAGD 202 Query: 672 QVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFC 731 + D L D V V + + +Y + FC Sbjct: 203 YAK----------DQLAQAMDKPV--------------IVGDAIDHYRRLCPGVPAIGFC 238 Query: 732 VTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVV 791 + A V E +A K + G D R +I R+ ++ Sbjct: 239 ASVEIAQKVAVEFSSAGFKA---------ASLDGTLDSATRS--HLIDDLGSGRI-QVLT 286 Query: 792 TVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 + ++++ G DIP + + LR +S LY Q GR R P K+ I D V Sbjct: 287 SCEIVSEGTDIPVVTAALLLRPTQSLGLYLQQVGRVLR--PAPGKSHALILDHV 338 >UniRef50_A4VXB4 Type I site-specific restriction-modification system, R (Restriction) subunit and related helicase n=13 Tax=Lactobacillales RepID=A4VXB4_STRSY Length = 1068 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 92/385 (23%), Positives = 160/385 (41%), Gaps = 77/385 (20%) Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRY--SKCFDNGFLRETLLEHYSPDEVHEA 355 D L + PI +E K++ +DV LN+ ++Y + + + F +L +P+ V Sbjct: 160 DTTLLINGLPIIQIEEKKDTVDVDKALNQMHQYIQERQYTDIFSTLQILVAIAPNNVR-- 217 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 + + ++F F + + G R+ +D + ++P H+ Sbjct: 218 -------YMANTTAEKFNKDFAFHWQ--------RKSDGSKVRNWKDFADSMLSIPMAHQ 262 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEI------LL 469 +L PQKQ M ++ +R YQ A AV + I K E+ + Sbjct: 263 MATNYMILDGTPQKQ---------MLKV-MRPYQVYATHAVIEGIKKVDFELGCNKVGYI 312 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAF--EDTRINGDTFNSI 527 TG+GKT T+ + + + +++FLVDR +L Q + D ++F SI Sbjct: 313 WHTTGSGKTITSFKTAWLASRMPKVDKVVFLVDRIALTNQTKDDYLAYDPEAGENSFGSI 372 Query: 528 FDIK---GLTDKFPEDSTKIHVATVQ---SLVKR-TLQSDEPMPVARYDCIVVDEAHRGY 580 + + L + + I V +VQ +LVKR + +S + ++ +VDEAHR Sbjct: 373 RETQNTTALARQLTSKDSGIIVTSVQKLDTLVKRKSFKSPD-----KHIVFIVDEAHRS- 426 Query: 581 ILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP-------ALHTVQIFGEPV 633 T G+ S A+++ A I T TP +L T IFG + Sbjct: 427 ------TGGD----SFAGIQKAFKK------AAWIGYTGTPNLDDTGASLQTQDIFGPLL 470 Query: 634 YRYTYRTAVID----GFLIDQDPPI 654 + YT + A+ D GF +D + I Sbjct: 471 HAYTIKNAISDRNVLGFKVDFETTI 495 >UniRef50_A5F3B5 Helicase-related protein n=24 Tax=Gammaproteobacteria RepID=A5F3B5_VIBC3 Length = 979 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 95/401 (23%), Positives = 155/401 (38%), Gaps = 72/401 (17%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q +A+ A+ +G L+ +ATG GKT A F +Q+Q K +LF+ R + Sbjct: 222 QVEALTALNATRAQGFSRGLVVLATGMGKTWLA---AFDALQTQSTK-VLFVAHREEILL 277 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHV-ATVQSLVKRT-LQSDEPMPVA 566 QA F N T GL + +++ + + A+V ++ K+ LQ Sbjct: 278 QAEKTFCQLIPNAKT--------GLYNGVTQNTQAMLLFASVATIGKQNHLQR---FAAD 326 Query: 567 RYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALH- 624 +D IVVDE H +YR +L +F + LTATP Sbjct: 327 HFDYIVVDEFHHAA-------------------ARSYRNLLTYFKPKFLLGLTATPERSD 367 Query: 625 TVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN 684 I + ++ G ID+ +I+ G+Y E G+ Sbjct: 368 QADILSLCDSNLVFERNLVHG--IDE----KILVPFDYHGIYDQAVNYQEIPWRNGKFDP 421 Query: 685 DTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL 744 D+L++ + RA + + +TL FCV+ HAD + E Sbjct: 422 DSLDN-------------ALATQRRA--EHVYQHWHQKKQTRTLAFCVSKKHADFMAEFC 466 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPS 804 + I I +D R+ Q + ++ +I+ +VDL G D+P+ Sbjct: 467 LS-----------KGIKAIAVYSDSKVRRNQAL--QWLDSGKIDILFSVDLFNEGTDLPA 513 Query: 805 ICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 I I+ LR S+IL+ Q GR R E K+ + D + Sbjct: 514 IDTILMLRPTESKILFLQQLGRGLRRSIETQKSKLVVIDFI 554 >UniRef50_C6E151 Type III restriction protein res subunit n=3 Tax=Deltaproteobacteria RepID=C6E151_GEOSM Length = 1042 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 99/386 (25%), Positives = 151/386 (39%), Gaps = 66/386 (17%) Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFK-RILFLVDRRSLGEQALGAFEDTRINGDTFNS 526 L+ ATGTGKT A +++R + R+LF+ R + ++A G F + + F Sbjct: 334 LVIAATGTGKTVIAAFDFKNFFEAKRRQARLLFIAHRLEILQKAQGTFRNV-LRDQNFGE 392 Query: 527 IFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQ 586 + L ++ + +V L R L E + YD IV+DEAH Sbjct: 393 L-----LVGEYQAVRLEHLFCSVGMLANRRLW--EQVGSGFYDYIVIDEAHH-------- 437 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATP----ALHTVQIFGEPVYRYTYRTA 641 S+YR I ++F + + LTATP + FG R+ Sbjct: 438 -----------STASSYRPIFENFAPEILLGLTATPERMDGGNVAADFGN---RFAAEIR 483 Query: 642 VIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRG 701 + + P + + +S GEQ R G+ LE+ V D R Sbjct: 484 LPEALEEKLLCPFHYF--GVADPIAIS-GEQFWR---NGKYNESALEN---VYVMDNVR- 533 Query: 702 LVIPAFNR--AVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDA 759 A R A+ LT Y + K + FCVT HA + E+ K+ P Sbjct: 534 ----AKQRVDAIITALTRYEPDLSNVKGVGFCVTIRHAHFMAEQFS---KRGIPSGAF-- 584 Query: 760 IIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRIL 819 ++G D K ++ + RL + TVD L+ GVDIP + ++FLR S + Sbjct: 585 ---VSGVEDDRCSK---LLEDLSTGRL-TFLFTVDKLSEGVDIPLLNTVLFLRPTESLTV 637 Query: 820 YEQMKGRATRLCPEVNKTSFKIFDCV 845 + Q GR R P K + D V Sbjct: 638 FLQQLGRGLRHAP--GKDCLTVIDLV 661 >UniRef50_B0TQK0 Type III restriction protein res subunit n=22 Tax=Bacteria RepID=B0TQK0_SHEHH Length = 1072 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 88/381 (23%), Positives = 142/381 (37%), Gaps = 91/381 (23%) Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSI 527 L+ ATGTGKT + + + LFL R + +QA A+ + + F + Sbjct: 351 LVVAATGTGKTIISAFDFAEFYAANPEAKFLFLAHREEILKQARSAYRGV-LKSNQFGEL 409 Query: 528 FDIKGLTDKFPEDSTKIHVATVQSLVKR--TLQSDEPMPVARYDCIVVDEAHRGYILDKE 585 + KF + A++QSL + T+Q E +D IV+DE H Sbjct: 410 LVGQNKPQKFNQ-----LFASIQSLNNQLATIQLTEDY----FDYIVIDEVHH------- 453 Query: 586 QTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQIFGEPVYRYTYRTAVID 644 S+YR +L HF + + LTATP H D Sbjct: 454 ------------IAASSYRPVLQHFKPQILVGLTATPERH-------------------D 482 Query: 645 GFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVI 704 G I +D I + L + +SP ++DD D + +G Sbjct: 483 GADILKDFCNVIAAE-----IRLPEAINQRHLSPFQYF---AVDDDTDLTKISWAKG--- 531 Query: 705 PAFNRAVCNELTNYLDP---------------TGSQKTLVFCVTNAHADMVVEELRAAFK 749 ++ A +L Y D + L FCV+ HA+ + ++ Sbjct: 532 -RYDIAELTKLYTYNDQRVLRILQSLEEIVTDISQMRALAFCVSKDHANFIAQKF----- 585 Query: 750 KKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIV 809 L++ +T D K+ +Q + K + N++ VD+ GVDIP + ++ Sbjct: 586 ----NLKNIPCGVLTSDNSKEREILQQRL----KSKEINVLFVVDIFNEGVDIPELDTLL 637 Query: 810 FLRKVRSRILYEQMKGRATRL 830 FLR S ++ Q GR RL Sbjct: 638 FLRPTESLTVFLQQLGRGLRL 658 >UniRef50_Q759H6 ADR302Wp n=1 Tax=Eremothecium gossypii RepID=Q759H6_ASHGO Length = 691 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 86/391 (21%), Positives = 156/391 (39%), Gaps = 53/391 (13%) Query: 441 SELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRI--L 498 + L LR YQ+ + + I G++ I +++ATG GKT ++ L Q Q+ +R L Sbjct: 45 AALPLREYQQACIDECLRCIADGRRRIGVSLATGGGKTVVFANLLNALRQEQQGRRFRAL 104 Query: 499 FLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQ 558 LV RR L +QA + N ++ + + ++ + VA+V SL++R Q Sbjct: 105 VLVHRRELAQQATRTLKRC---APELN--VQVEMASQRANLETADVVVASVLSLIRRLDQ 159 Query: 559 SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALT 618 P D I++DEAH +Y R+L+H A T Sbjct: 160 ----YPRGSIDAIIIDEAHHA-------------------AAESYLRVLEHLGA-GTKDT 195 Query: 619 ATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 P + F + R +D + + I + EG + + + Sbjct: 196 KVPVIGFSATFERADRKALSRA--MDEIVFHKGILEMIDEKWLCEGRFTTVDVDAD---- 249 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHAD 738 ++ DF+++ ++ + NR V N + + L+F + +H Sbjct: 250 ----LDGVEMSGSDFQLSSLSQVMNTEQVNRIVLNTYLHKRREHKLKSALLFGIDVSH-- 303 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 V+ L F+ +E + T ++D +++ F + + +++ + T Sbjct: 304 --VKSLCKLFQAN--GIEAQYVTAKTRPTERD-----SIVEDFRRGDI-EVLMNCGIFTE 353 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 G DIP+I ++ R RSR L QM GR R Sbjct: 354 GTDIPNIDCLLLCRPTRSRTLLVQMIGRGLR 384 >UniRef50_A5KRT5 Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KRT5_9BACT Length = 185 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 91/219 (41%), Gaps = 52/219 (23%) Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 E+++R ID +LR+ GW +++ + P + A+ E+PT + G DY L Sbjct: 14 EQKTRRNIDRKLRECGW-----SVQNYRSYNPSENLGVAVREYPT------DTGPVDYAL 62 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 FV KPI V+EAK++ + ++ Y+K + Sbjct: 63 FVDRKPIGVIEAKKDGAILSNHEEQTEEYAKS--------------------------KF 96 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 WQ +PF Y +E R T D+RD R + L +H PE LLE Sbjct: 97 KWQIGED----VMPFVYEATSKEVRFT----------DLRDPRPRFRELFAFHCPETLLE 142 Query: 422 MLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI 460 S + F+D P + E GLR Q A+ +E ++ Sbjct: 143 WSKSAKSLRAS-FSDIPELDETGLRACQVIAINNLETSL 180 >UniRef50_B1BM47 Type III restriction enzyme, res subunit family n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BM47_CLOPE Length = 740 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 100/408 (24%), Positives = 172/408 (42%), Gaps = 54/408 (13%) Query: 439 GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRIL 498 G S L +Q+DAV + K + LL + TG GKT T + + + + + + K++L Sbjct: 18 GKSNRTLYEHQKDAVEKLNKLNERDSFSSLLVLPTGGGKTFTGVYWLLKEVVNNK-KKVL 76 Query: 499 FLVDRRSLGEQALGAFEDTRINGDTFN-SIFDIKGLTDKFPE-----DSTKIHVATVQSL 552 ++ R L EQA F+ T + +N S F+ + ++ K + +S I + + S Sbjct: 77 WIAHRHLLLEQAANTFQKTAYSDLLYNISSFNYRIVSGKHDQAINIKESDDILIISKDSA 136 Query: 553 VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA 612 ++ + + +V+DEAH +R +DYV Y ++ + Sbjct: 137 IRNLDSIGKWLSKEEEVYLVIDEAHHA---------TAKSYRKLIDYV--YSKV----EK 181 Query: 613 VK-IALTATPALHTVQIFGEPVYRYTYRTAVIDG--FLIDQDPPI--QIITRNAQEG--V 665 VK + LTATP G +T DG F ID I +I++R E Sbjct: 182 VKLLGLTATPFRTADNEQGLLAKIFT------DGIVFKIDLKDLIKKEILSRPLFEACET 235 Query: 666 YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ 725 + G + + + D L DD ++A+ N+ + N LD G Sbjct: 236 EIKVGNNMGLKAIKNIEYLDNLPDDIANDIANNKER------NKLIVNRYLANLDKYG-- 287 Query: 726 KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITG----DADKDARKVQTMITRF 781 +T++F + HA LR F+K + I+ T D ++ + I + Sbjct: 288 QTIIFALNRLHAI----SLRGLFEK--AGIPAGVIVSGTKAEFIGIDISDKENELQIKNY 341 Query: 782 NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 + ++ +++ V++LT GVD+P + R S IL QM GRA R Sbjct: 342 REGKIK-VLINVNILTEGVDLPQTKTVFLTRPTVSTILMTQMVGRALR 388 >UniRef50_C6MBL3 Type III restriction protein res subunit n=3 Tax=Proteobacteria RepID=C6MBL3_9PROT Length = 1103 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 143/652 (21%), Positives = 260/652 (39%), Gaps = 128/652 (19%) Query: 284 WPTGKD--ETGNQGFA---DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGF 338 W T + +TG +G A D VLFV P+A +E K + Y+ ++ + Sbjct: 164 WATDQHLTQTGTKGKAWRIDLVLFVNGLPVATLELKSEFKQAVFNAIQQYKTTRFATDPV 223 Query: 339 LR--ETLLEHYSPDEVHEAVPEYETSWQD-TSGKQRFKIPFCYSTNGREYRATMKTKSGI 395 + E LL VH AV +YE G+ F +PF + T++ +G Sbjct: 224 TKKPEPLLTFKRGALVHFAVSQYEVYMTTRLEGEDTFFLPFN--------KGTIEGGAG- 274 Query: 396 WYRDVRDTRNMSKALPEWHR---PEELLEMLGS----EPQKQNQWFADNPGMSELGL-RY 447 DV + N W+ P+ LL +L + +++ W L RY Sbjct: 275 --NDVPEEVNRYATDYLWNEVLLPDNLLTILARYVHLQIEEKEDWEGRKSKKETLIFPRY 332 Query: 448 YQEDAV-RAVEKAIVKGQ-QEILLAMATGTGKTRT------AIAMMFRLIQSQRFKRILF 499 +Q D V R + A +G + L+ + G+GK+ + ++ ++ S+ F ++ Sbjct: 333 HQWDVVNRLMNAARTEGPGHKYLIQHSAGSGKSNSIAWVAHQLSSLYNPQGSKLFNSVIV 392 Query: 500 LVDRRSLGEQ---ALGAFEDT-----RIN---GDTFNSIFDIKGLTDKFPEDSTKIHVAT 548 + DR L +Q + FE RIN GD S L E+S I + T Sbjct: 393 VTDRTVLDDQLQDTINQFEHVDGMVGRINRQEGDGSKSEKLAAAL-----ENSQPIIIVT 447 Query: 549 VQSL--VKRTLQSDEPMPVARYDCIVVDEAH-----------RGYILDKEQTEGELQFRS 595 +Q+ V R +++ + Y I+ DEAH + ++ + +GE + S Sbjct: 448 IQTFPYVLRAIENSVSLKQRCY-AIIADEAHSSQTGSTARQLKEVLMIDAKADGEEELSS 506 Query: 596 Q--LDYVSAYRRILDHFDAVKIALTATPALHTVQIFG------EPVYR---------YTY 638 + LD A RR D+ A TATP T+++FG EP R Y+ Sbjct: 507 EDILDAAVASRRASDNLSY--FAFTATPKTKTLELFGRLPNPHEPPSRTNKPQAYHVYSM 564 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADF 698 R A+ +GF++D ++ V + ++++ + E ++ +Q + ++ Sbjct: 565 RQAIEEGFILD------VLKNYTNYKVAYNLAQKIQSADQEVESRKAKVKLNQWVRLHEY 618 Query: 699 NRG----LVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL---RAAFKKK 751 N +++ F V L G K +V VT++ + V +L + ++ Sbjct: 619 NIAQKVQVIVEHFRSNVQGLL------GGQAKAMV--VTSSRKEAVRYKLGFDKYIAQQG 670 Query: 752 YPQLEHDAIIKITGD---ADKDARKVQTMITRFNKERL-PN----------------IVV 791 YP++ A++ +G+ ++KD + +F + + PN +++ Sbjct: 671 YPKIH--AMVAFSGEVEFSEKDPNATALLGEKFTESNMNPNLKGRDMRKAFDTDDYQVMI 728 Query: 792 TVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 + TG D P +C +++ K + Q R R P +T I D Sbjct: 729 VANKFQTGFDQPKLC-AMYVDKKLGGVECVQTLSRLNRTYPGKAETGTFILD 779 >UniRef50_Q4A127 Type-1 restriction enzyme R protein n=77 Tax=cellular organisms RepID=HSDR_STAS1 Length = 930 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 81/360 (22%), Positives = 139/360 (38%), Gaps = 67/360 (18%) Query: 300 VLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 +L GL P+ +E KR ID+ N+ RY K G R Y Sbjct: 127 ILINGL-PLVQIELKRRGIDINEAFNQVMRYRKQNYTGLFR------------------Y 167 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTR--NMSKALPEWHRPE 417 + ++G + + +G Y++ M ++ D + R +++ + RP Sbjct: 168 IQLFIISNG---IDTRYISNNDGEIYKSHM-----FYWSDKENNRINTLNEFTETFLRPC 219 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 + +M+ S N+ DN M+ +R YQ AV A+ + + TG+GK Sbjct: 220 HIAKMI-SRYMILNE--TDNILMA---MRPYQVHAVEALIHQATETSNNGYIWHTTGSGK 273 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 T T+ L + K+++FLVDR+ L Q F + + + + + L + Sbjct: 274 TLTSFKASQVLSEQDDIKKVIFLVDRKDLDSQTEEEF--NKFSKGSVDKTNNTAQLVKQL 331 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIV--VDEAHRGYILDKEQTEGELQFRS 595 + S + V T+Q + K + E + + D +V +DE HR D Sbjct: 332 KDKSLPLIVTTIQKMSKAIQNNAEALDQYKTDKVVFIIDECHRSQFGD------------ 379 Query: 596 QLDYVSAYRRILDHF-DAVKIALTATPALH---------TVQIFGEPVYRYTYRTAVIDG 645 +R + HF +A T TP T IFG ++ Y + A+ DG Sbjct: 380 ------MHRIVRQHFNNAQYFGFTGTPRFEENQSQDGRSTADIFGRCLHTYLIKDAIHDG 433 >UniRef50_Q59PU6 Putative uncharacterized protein n=1 Tax=Candida albicans RepID=Q59PU6_CANAL Length = 623 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 98/440 (22%), Positives = 179/440 (40%), Gaps = 72/440 (16%) Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 P L++ + + W++ + LR YQ++A+ ++ +A G + + MATG+ Sbjct: 8 PRVLVKYMKYKLSPIQSWYSKRL-IHSFALRDYQQEAIDSILEASESGVKRQAIEMATGS 66 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKT + + L++ + K L L + L Q+ TRIN D I + + Sbjct: 67 GKT-VVFSHLIPLLKGKGTK-TLVLEHTQELIAQSYDKI--TRINPDLRVGI----EMAE 118 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 + + VA+VQSL T + + I++DE H Sbjct: 119 SRARLNDDVIVASVQSLA--TNKRFTKFNPDDFKTIIIDECHHAV--------------- 161 Query: 596 QLDYVSAYRRILDHFDAVK-------IALTATPALHTVQIFGEPVYRYTYRTAVIDGFLI 648 Y++IL HF A I TAT A Q+ AV D + Sbjct: 162 ----APTYQKILKHFKADTKNTNINVIGFTATLARADKQML----------KAVFDRIVF 207 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 + I N + + + +R++ +++ +D++ ++ N Sbjct: 208 QRSLATMIF--NKELASFKASKLYFKRLN-----LSNVKMKGKDYDPKALYNAVLKAGIN 260 Query: 709 RAVCNELTNYLDPTGSQK-TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDA 767 + L Y++ K TL+FC+ H E+ A +K+ ++ +I T ++ Sbjct: 261 EHL---LLAYMELEKEYKSTLIFCINVEHC----REVCALLQKQ--GVDARYVISETSNS 311 Query: 768 DKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 ++ +T++ F + + P ++ V + T G DIP+I +I+ R +S+ L QM GR Sbjct: 312 ER-----KTIVADFKQGKFP-VLCNVTVFTEGTDIPNIDSIILARPTKSKPLMIQMIGRG 365 Query: 828 TRLCPEVNKTSFKIFDCVDI 847 RL E K+ + D V I Sbjct: 366 LRLHKE--KSHCHVVDLVGI 383 >UniRef50_C0QBM3 RecQ1 n=2 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QBM3_DESAH Length = 1040 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 12/123 (9%) Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDAD 768 R + + L + + + FCV+ AHA + E+ +AA + + +T + Sbjct: 536 RLIIEKAKEILLDVSAARGICFCVSQAHAGYMAEKFQAA---------GISAMALTAETA 586 Query: 769 KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 +D R+ + R ++R N + VDL GVDIP I ++FLR S ++ Q GR Sbjct: 587 RDVRRAA--VKRL-QQRDVNFLCVVDLFNEGVDIPEIDTVLFLRPTESLTVFLQQLGRGL 643 Query: 829 RLC 831 RLC Sbjct: 644 RLC 646 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 32/178 (17%) Query: 447 YYQE--DAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 Y QE D ++A E+A+ + +++A ATGTGKT A + + KR+LF+ R Sbjct: 315 YQQEILDTLKA-ERALHHRWRNLVVA-ATGTGKTIIAAFDFKQSFERPGQKRMLFVAHRE 372 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 + Q+ G F + + F ++ + + P+ K+ V +VQ+L R L + +P Sbjct: 373 EILVQSRGVFRNI-LRDHNFGELW----VGNHRPDHLEKLFV-SVQTLNARALW--DQVP 424 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATP 621 +D IVVDE H G +Y+R+LD+F + + LTATP Sbjct: 425 PDFFDYIVVDEFHHG-------------------AAPSYQRLLDYFTPKILLGLTATP 463 >UniRef50_B9W8D3 Putative uncharacterized protein n=4 Tax=Candida RepID=B9W8D3_CANDC Length = 654 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 102/438 (23%), Positives = 174/438 (39%), Gaps = 90/438 (20%) Query: 425 SEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAM 484 S P+ QN F+ + LR YQ+ A+ + ++ G + + MATG+GKT + Sbjct: 18 SLPKMQNIRFSHS-----FPLRDYQQKAIDLILESSGSGVKRQAIEMATGSGKT-VVFSH 71 Query: 485 MFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKI 544 + L++ + K L L + L Q+ ++N D I G P+D + Sbjct: 72 LIPLLKREGAK-TLVLAHTQELITQSRDKI--NKVNPDLKVGIE--MGKVRSTPDDD--V 124 Query: 545 HVATVQSLVKRTLQSDEPMPVARYD-----CIVVDEAHRGYILDKEQTEGELQFRSQLDY 599 VA+V SL + +AR+D I++DE H Sbjct: 125 IVASVMSLARSN-------RLARFDPDEFKTIIIDECHHAI------------------- 158 Query: 600 VSAYRRILDHF-------DAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDP 652 +Y +IL HF D I TAT A Q G V D + + Sbjct: 159 APSYLKILKHFKADTKDTDVHVIGFTATLARTDKQKLG----------TVFDKIVFQRSL 208 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC 712 P I + E ++ +S + + + + D++ + + A N+ Sbjct: 209 PTMIENKELAEF-------KISNVSIKNLNLTNVPKKGGDYDSSS-----LYLALNKVDI 256 Query: 713 NE--LTNYLDPTGSQK-TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADK 769 NE L Y++ K T++FCV H E+ F+++ ++ + G+ + Sbjct: 257 NEKILLAYMELAKDYKSTIIFCVNVEHC----REVCGLFQQQGIDAQY-----VLGETSR 307 Query: 770 DARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 R+ ++ F + + P ++ V + T G DIP+I +I+ R S+ L QM GR R Sbjct: 308 IEREF--IVEDFKQGKFP-VLCNVGVFTEGTDIPNIDSIILARPTMSQSLMIQMIGRGLR 364 Query: 830 LCPEVNKTSFKIFDCVDI 847 L E K+ + D V I Sbjct: 365 LHKE--KSHCHVIDLVGI 380 >UniRef50_Q6F1F2 DNA repair DNA/RNA helicase n=3 Tax=Entomoplasmatales RepID=Q6F1F2_MESFL Length = 905 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 93/404 (23%), Positives = 164/404 (40%), Gaps = 99/404 (24%) Query: 468 LLAMATGTGKTR-TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNS 526 L+ MATGTGKT +A + Q+++ +ILFL +R + +QA+ + + + F Sbjct: 226 LVIMATGTGKTLVSAFDYKRQSGQAKKDLKILFLAHQREIVDQAIKTYRHV-LENNKFGE 284 Query: 527 IFDIKGLTDKFPEDSTKIHV-ATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKE 585 + + + P IH+ AT+Q+L R L +P +D IV DEAH Sbjct: 285 VMYDGSINSEKP-----IHLFATIQTLSTR-LNKFKP---NDFDIIVYDEAHHIA----- 330 Query: 586 QTEGELQFRSQLDYVSAYRRILDHFDAVKI-ALTATPALHT---VQIFGEPVYRYTYRT- 640 + + ++ ++F +I LTATP ++ + + Y R Sbjct: 331 --------------ANTFDKVFNYFKPQQILGLTATPEREDNKDIKAYFDDEYATELRLW 376 Query: 641 AVIDGFLI---------DQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ 691 ID L+ D + +Q + N+ + ++ +V + E++ T+E Sbjct: 377 DAIDQKLLCPFDYYCIDDTNTNLQGVNLNSDKDIF-----KVVNTDSRNELLFKTIEK-- 429 Query: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKK 751 YL L+FCVT HA + L + Sbjct: 430 --------------------------YLGVYARPTALIFCVTVEHAINISNYLNS----- 458 Query: 752 YPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFL 811 L+ + + T KD +++ + F+ R+ N + V++ GVDIP I I+ L Sbjct: 459 -KNLKAEVL---TSQNTKDRKRI---LHEFSTGRI-NYLCVVNIFNEGVDIPEINTIILL 510 Query: 812 RKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD 855 R S+ +Y Q GR R KT K + +++Y + ++D Sbjct: 511 RPTNSKTVYLQQLGRGLR------KTELK--NKLEVYDLISNID 546 >UniRef50_A0RVA6 Superfamily II helicase n=1 Tax=Cenarchaeum symbiosum RepID=A0RVA6_CENSY Length = 537 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 93/402 (23%), Positives = 161/402 (40%), Gaps = 65/402 (16%) Query: 448 YQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLG 507 YQ AV ++ + +LL + TG GKTR A+ ++ L+ +++L L Sbjct: 143 YQIGAVSRIKDILEHEGGRVLLHVPTGGGKTRIAMRVVADLLLENPSSLVIWLAYSEELC 202 Query: 508 EQALGAFEDT-RINGDTFNSIFDIKGLTDK---FPEDSTKIHVATVQSLVKRTLQSDEPM 563 EQA+ F+ R G+ SI+ + G D E + + VA + + +R + + Sbjct: 203 EQAIEEFKSAWRHTGNRDVSIYRLFGGHDTDVLGRECRSGLIVAGLSKVYRRARTNSMLL 262 Query: 564 PVA--RYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAY-------------RRILD 608 R +++DEAH+ + G L + ++ V R++ + Sbjct: 263 TTLADRASLVIIDEAHQAIAETYKLVLGYLVEKHDVNLVGLSATPGRTWNSPLEDRKLAE 322 Query: 609 HFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLS 668 F+ K+ T++ +PV + DG+L P I+ I + + Sbjct: 323 FFNEKKV---------TIETGTDPV-----SFLIKDGYL--AKPNIEQIRHDG-----ML 361 Query: 669 KGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTL 728 +ERI+ E+ ND L D D R ++I + + + ++ + Sbjct: 362 TNSDMERIAKSLEIPNDIL----DKLARDAKRNMLIIDKIKRLARD---------HRRII 408 Query: 729 VFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERL-P 787 VF HA + L + HDA + D KD R ++I F ++ Sbjct: 409 VFAAGIRHARDISLVLHT--------MGHDASY-VDSDTPKDVR--NSLINHFREDTADT 457 Query: 788 NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 I+ +LTTG D P ++ R +S ILY QM GRA R Sbjct: 458 RIMCNFGVLTTGFDAPKTSAVLIARPTKSLILYSQMMGRAIR 499 >UniRef50_B9ZQ48 Type III restriction protein res subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ48_9GAMM Length = 678 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 94/429 (21%), Positives = 161/429 (37%), Gaps = 89/429 (20%) Query: 444 GLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT--AIAMMFRLIQSQRF---KRIL 498 G R YQ +AV + +V ++ +L+ M TG GK+ I+ + R + ++ K++L Sbjct: 17 GFRPYQREAVDCYTRWVVSTREPLLIVMPTGAGKSWVIAGISAVLRQLAYEKTGLRKKVL 76 Query: 499 FLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK-FPEDSTKIHVATVQSLVKRTL 557 L L Q E + F + G DK ED TV+ ++ + Sbjct: 77 VLAPSAELVGQNHAKMEASGFKASIFCA-----GAGDKSHSEDIIYATPETVRVNIEELM 131 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIA- 616 + + + +++DEAH R+ + A I V++A Sbjct: 132 EYE-------FAGVLIDEAH----------------RTSNQIIEAIDTIRSRNPNVRVAG 168 Query: 617 LTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQD-----PPIQIITRNAQEGVYLSKGE 671 LTATP YR T +G++ QD PP+ Y+ Sbjct: 169 LTATP------------YRLT------EGYIYRQDKHLDLPPMSDDLTLDPYFSYMIYEV 210 Query: 672 QVERISPQGEVINDTLED-DQDFEVADFNRG------------LVIPAFNRAVCNELTNY 718 + QG ++ D ++ R + + R + E+ Sbjct: 211 SAHYLIEQGYILPPIFGDVTAQYDTTKLVRNRTANWTNESSDEVFVHGNARDLAQEIVKE 270 Query: 719 LDPT---GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQ 775 + G ++FC HA+MV+ L P + I + K R+V+ Sbjct: 271 VKQKIRGGRHSAILFCQNIKHAEMVLSLL--------PPSQSGMI------SHKTPRRVR 316 Query: 776 -TMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV 834 +I F++++ +V V LTTG D+ ++ I LR S L++Q+ GR RL PE Sbjct: 317 RQIIADFHRKKAFKYLVNVSTLTTGFDVAAVDVIAILRATHSASLFQQILGRGLRLSPET 376 Query: 835 NKTSFKIFD 843 K + D Sbjct: 377 GKEDCLVLD 385 >UniRef50_D2Q5U4 DNA/RNA helicase (DEAD/DEAH box family) n=7 Tax=Bifidobacterium RepID=D2Q5U4_9BIFI Length = 1050 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 95/411 (23%), Positives = 171/411 (41%), Gaps = 87/411 (21%) Query: 462 KGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING 521 +G+ ++ ATGTGKT + A R + KR+L++ + + ++A +++ ++ G Sbjct: 256 QGESRAIIISATGTGKTYLS-AFDVRQFKP---KRMLYIAQQEQILKKAKESYQ--KVLG 309 Query: 522 DTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY-----DCIVVDEA 576 + G++ E K ATVQ++ + P + ++ D I++DE Sbjct: 310 CPAKELGLFSGISK---EHDRKYLFATVQTMSR-------PEVLVQFGKDDFDYILIDEV 359 Query: 577 HRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATP----ALHTVQIFGE 631 H +Y+RI+D+F + +TATP + ++FG Sbjct: 360 HHAA-------------------ADSYKRIIDYFTPDFMLGMTATPERTDGANIFELFGN 400 Query: 632 PV-YRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVI------N 684 V Y + A+ + L P Y E ++ +P G ++ + Sbjct: 401 NVAYEIRLQRALEESMLC----PFH----------YYGVHEYIQE-APNGRLLGKQIKAS 445 Query: 685 DTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL 744 D E +++ +++ + L P+ + +++ Y + + LVFC A + L Sbjct: 446 DWTEQERN-DLSHWLEELTSPSRVHYIIDKIQLYGEAGTDVQGLVFCSRREEA----KRL 500 Query: 745 RAAFKKKY-PQLEHDAIIK-ITGDADKDARKVQTMITRFNKERLPN----IVVTVDLLTT 798 A F ++ Q E K ITG+ + R + E+L N + TVDL Sbjct: 501 SALFNQQINQQAERPYHTKAITGEHSQAERDLAV-------EQLENGELDYIFTVDLFNE 553 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYS 849 GVDIP I IV LR+ +S I++ Q GR R K S + D + Y+ Sbjct: 554 GVDIPHINQIVMLRQTQSSIIFTQQLGRGLRKAS--GKDSVVVIDFIGNYA 602 >UniRef50_Q3ADU9 Type I restriction-modification system, R subunit n=5 Tax=Bacteria RepID=Q3ADU9_CARHZ Length = 1067 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 31/220 (14%) Query: 439 GMSELGLRYYQEDAVRAVEKAIVKGQQEI----LLAMATGTGKTRTAIAMMFRLIQSQRF 494 G+ ++ RY Q AV+ + K + +G+ I ++ G+GK+ T + M+ + F Sbjct: 291 GVIKVVARYQQFRAVKKMVKRLKEGKTPIERGGIVWHTQGSGKSLTMMYMVREMYHQPEF 350 Query: 495 K--RILFLVDRRSLGEQALGAFEDTRIN-GDTFNSIFDIKGLTDKFPEDSTKIHVATVQS 551 +I+F+ DR+ L +Q DT + G T N I+ L + + +A V Sbjct: 351 GSFKIVFITDRKELEQQ----LRDTSKSVGFTVNLAGSIEELKQLLKTKTPDLVMAMVHK 406 Query: 552 LVKRTLQSDEPMPVARYDCIV-VDEAHRGYILDKEQTEGELQFRSQLDYVSA-YRRILDH 609 +R L+ + P+ + +V +DEAHR +Q + A R+ L Sbjct: 407 FQERDLKREFPVLNTSPNILVMIDEAHR----------------TQYKLLGANLRKALP- 449 Query: 610 FDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLID 649 +AV+IA T TP T Q FG+ + +Y+ R AV DG ++ Sbjct: 450 -NAVRIAFTGTPIDKTEQEFGQYIDKYSIRQAVDDGVTVE 488 >UniRef50_Q1ZDQ8 ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZDQ8_9GAMM Length = 942 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 12/160 (7%) Query: 24 AENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQHDLLRELGKIAFVD---DNIL 80 A+N DP + L K+R + E+ L LN+P CE + +L+ +L FV+ + I Sbjct: 22 AKNYVYTDPQSALTKLRCYCESVVGILYRELNLP-CEPRSNLVDKLKSELFVELVGEEIC 80 Query: 81 SVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLVTKDYDFPVPVFVLPERGE 140 H +R GN+AVH +DA L+ + + W ++ + + P F++P R + Sbjct: 81 QKLHAIRMKGNRAVHHNEATTDDALWLLKEAYLIGQWLHKSYSGELHIDYPSFIVPVRPD 140 Query: 141 NL-----YHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKL 175 ++ H E+ QL +E +A +A Q++L Sbjct: 141 SIDKLSKSHDEMAI---QLAASRQEFVSLEASEKAAQEEL 177 >UniRef50_D0XHM4 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XHM4_VIBHA Length = 551 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 101/392 (25%), Positives = 158/392 (40%), Gaps = 84/392 (21%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ+ V + +A+ K +L ATG GKT +M + ++ FK L L R Sbjct: 3 LRNYQQRFVNSSLEAL-KNHHGVLGVGATGCGKT-----VMLSSV-AREFKSALVLQHRT 55 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDI--KGLTDKFPEDSTKIHV-ATVQSLVKRTLQSDE 561 L EQ N TF+ + GL D D +K + VQ++ +R DE Sbjct: 56 ELLEQ----------NSKTFSWVNPALKYGLVDSKNNDWSKPYTFGMVQTIARRM---DE 102 Query: 562 PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP 621 + YD IV+DEAH + + A R + DA +TATP Sbjct: 103 ---IKGYDLIVIDEAH------------HTAANQHAEIIEAVRN--SNPDAKLFGVTATP 145 Query: 622 AL---HTVQIFGEPVYRYTYRTAVI-DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 + F E + +I +GFL+ PP+ + + A Sbjct: 146 ERADKKDLSKFYETISDQIKMNELIKNGFLV---PPLGYVIKVADS-------------- 188 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHA 737 E + +DD+ E L + A N V E + G+++T++FC T HA Sbjct: 189 ---EQLKAAKDDDEKIEAL-----LNLKATNERVIEE---WRKIAGNRQTVIFCQTRKHA 237 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 V E AF+K ++ D I + + ++ R + + +L ++V V++LT Sbjct: 238 IDVTE----AFQK--AGIKCDYIDGVMSERERKKR-----LKALDTGKL-QVIVNVNVLT 285 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 G D I ++ LR S+ QM GR R Sbjct: 286 EGFDSQPISCVILLRGSSSKSSLIQMVGRGLR 317 >UniRef50_A9G978 Putative uncharacterized protein n=2 Tax=Myxococcales RepID=A9G978_SORC5 Length = 557 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 109/437 (24%), Positives = 169/437 (38%), Gaps = 91/437 (20%) Query: 439 GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRIL 498 G LR YQ AV AV A +G + +++ + TG GKT ++F + +++L Sbjct: 12 GPGAPALRPYQRAAVDAVLAARRRGVRRMVVCLPTGAGKT-----VIFSHLARLARRQVL 66 Query: 499 FLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQ 558 L R L QA E T ++ + P D+ ++ V +++SL ++ L Sbjct: 67 VLAHREELLFQAKDKIERALAGQATVA----VEQGELRAPADA-RVIVCSIRSLHEKRL- 120 Query: 559 SDEPMPVAR-YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIAL 617 E + R ++ DE H D RR+L A A Sbjct: 121 --EQVTGGRDIGLVIYDECHHAPADDN-------------------RRVLRQLGAFDPAW 159 Query: 618 TATPALHTVQ-----------IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVY 666 T T T +F VY + + DG+L P+ G Sbjct: 160 TGTLLGFTATTARGDGKGLDDVFEAIVYSRSLPEMIADGYLA----PLT--------GYR 207 Query: 667 LSKGEQVERISPQG-EVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ 725 ++ + ++ G + D LE+ D E R ++ R++ EL + Sbjct: 208 VATATDLSPLAAGGLDFATDELEEAVDME----ERNALV---ARSI-QELAR------DR 253 Query: 726 KTLVFCVTNAHADMVVEEL-RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKE 784 +T+ FCVT AHA + + L + Y + GD D R ++ F +E Sbjct: 254 RTIAFCVTVAHARNLSKALNHLGVRSAY----------VHGDMPSDLRG--RILADFREE 301 Query: 785 RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDC 844 R+ ++ V +LT G D P + I R RS LY Q GR TRL P K I D Sbjct: 302 RV-QVLTNVAVLTEGFDDPGVSCIAMARPTRSDGLYAQCVGRGTRLHP--GKKDCLILDF 358 Query: 845 VDIYS----TLESVDTM 857 VD+ S TL S+ M Sbjct: 359 VDLSSLQLCTLPSLFGM 375 >UniRef50_C7NM10 Type I restriction enzyme R protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NM10_KYTSD Length = 1006 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 99/403 (24%), Positives = 164/403 (40%), Gaps = 71/403 (17%) Query: 298 DYVLFVGLKPIAVVEAKRN-NIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 D L + P+A E K YR + ++ R L HY+ D H A+ Sbjct: 140 DVTLVLNGIPVATAELKNPFTHQTIEHAKTQYREDRHPNDLIFRSRALVHYAVDPHHVAM 199 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 + QDT RF +PF +NG + T +G RD T + + + W R Sbjct: 200 TT-RLAGQDT----RF-LPFDQGSNGPGHPGT----AGNPQRDGYQTAYLWEEV--WQR- 246 Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEI--LLAMATG 474 + LE+LGS Q++ + L RY+Q AVR++ A + + L+ + G Sbjct: 247 DAWLELLGSFIQQRKE----GSSWQVLFPRYHQWHAVRSILAATYEDGAGVDRLIQHSAG 302 Query: 475 TGKTRTAIAMMFRLI-------QSQRFKRILFLVDRRSLGEQ---ALGAFEDTRINGDTF 524 +GK+ T IA L+ ++ F +++ L DR+ L +Q + E T G Sbjct: 303 SGKSNT-IAWSAHLLSRLHGKDEAPVFDKVVVLTDRKVLDKQLQNTVAGLEHT--EGTIV 359 Query: 525 NSIFDIKGLTDKFPEDSTKIHVATVQS------LVKRTLQ--SDEPMPVARYDCIVVDEA 576 D K L ++ +I + T+Q L K + D + + ++VDEA Sbjct: 360 RIDKDSKQLKASLEGNAARIIITTLQKFPVVMQLAKEQAKETGDGGRVMGQRFAVIVDEA 419 Query: 577 H---------------RGYI---LD----KEQTEGELQFRSQLDYVSAYRRILDHFDAVK 614 H +G + LD E T+G + + + + +R + Sbjct: 420 HSSTSGSAFSGMKRVLKGGVDEALDDAEAAETTDGNVPGAEEDSLLESAQRRGKQSNLSF 479 Query: 615 IALTATPALHTVQIFGE--------PVYRYTYRTAVIDGFLID 649 A TATP T+ IFG+ P + Y+ R A+ +GF++D Sbjct: 480 FAFTATPKPKTLNIFGQTGPDGVKRPFHTYSMRQAIAEGFILD 522 >UniRef50_C8Q076 Type III restriction enzyme, res subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q076_9GAMM Length = 599 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 89/381 (23%), Positives = 146/381 (38%), Gaps = 74/381 (19%) Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIK 531 G GK+ + R+I+ RI+ V + L +Q L E R + + Sbjct: 32 CVGAGKSIIIAELCKRIIELDPQARIVMCVASKELCQQNL---EKLRAIWEDAPAGVCSA 88 Query: 532 GLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGEL 591 L K + +++I AT+ S+ K + + + + +++DE H ++ Sbjct: 89 SLGQK--DMNSQIIFATIGSIAKYAHE------LGKVNILIIDECHN------VNSDNAG 134 Query: 592 QFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQ----IFGEPVYRYTYRTAVI 643 +R+ +D + Y I T TP + Q +F R T + Sbjct: 135 MYRTFIDDIKKYGSPY----VCVIGFTGTPFRGDGIWLWQGKDPLFAGTATRVTMDELLK 190 Query: 644 DGFL----IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFN 699 GFL +DQ P I T GV S G D+ V D Sbjct: 191 LGFLSPLVVDQGTPETIDT----TGVKTSMG---------------------DYVVKDLE 225 Query: 700 RGLVIPAFNRAVCNELTNYLDPTGSQ--KTLVFCVTNAHADMVVEELRAAFKKKYP-QLE 756 + P + ++L G++ K L+FCVT HA V++EL+ + + L Sbjct: 226 NAALDPVIIKKTVSDLCE----RGAERKKWLIFCVTIDHAKAVLDELKVTENEHFTLNLN 281 Query: 757 HDAIIKITGDADKDARKVQTMITRF----NKERLPNIVVTVDLLTTGVDIPSICNIVFLR 812 + + T + + ++ RF N+ N +V V LTTG D PS I LR Sbjct: 282 PEMVTSKTSNIMR-----SDILARFKLPHNQPSAINCLVNVACLTTGFDAPSTDLIALLR 336 Query: 813 KVRSRILYEQMKGRATRLCPE 833 +S +LY Q+ GR R+ E Sbjct: 337 PTKSPVLYVQIAGRGMRIAEE 357 >UniRef50_UPI0001C16ACF TPR repeat protein n=2 Tax=Nostocaceae RepID=UPI0001C16ACF Length = 1280 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 5/148 (3%) Query: 32 PNTTLIKMRMFGEATAKHLGLLLN--IPPCENQHDLLRELGKIAFVDDNILSVFHKLRRI 89 PNT L+K+ FG+ A+ + ENQ DLL +L + + +FH++R + Sbjct: 34 PNTCLVKLCYFGQLLAQLIAARTGNFHSTVENQADLLNQLELKGILPQKVALLFHQVRVV 93 Query: 90 GNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLT 149 ++A +EY +D + A L++ LA+W++R + F F+ P + Y E L Sbjct: 94 SDRAAYEYTSDSSQALTILKIARELAIWFHRTFGGNTTFTPNPFISPSSSVD-YGAE-LE 151 Query: 150 LKQQLEQQVREKAQTQAEVEAQQQKLVA 177 + Q +E + E+A + V Q + V Sbjct: 152 ILQHIETEF-EQALPKFSVHLAQMQAVC 178 >UniRef50_A1CDN6 DEAD/DEAH box helicase, putative n=2 Tax=Aspergillus RepID=A1CDN6_ASPCL Length = 539 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 82/323 (25%), Positives = 127/323 (39%), Gaps = 75/323 (23%) Query: 544 IHVATVQSLVKRT-LQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSA 602 I VA+VQ+L + T L +P A++ ++VDEAH +I+ + Sbjct: 12 IIVASVQTLARGTRLSKFDP---AQFKLVLVDEAH--HIV-----------------APS 49 Query: 603 YRRILDHFDAVK--------IALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPI 654 YR L HF K + ++AT + + G + Y +D +ID+ Sbjct: 50 YREALTHFGVDKESPDSPALVGVSATFSRYDGLKLGAAIDHIVYHKDYMD--MIDEKWLA 107 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 + LSK V D+ DF + ++ + + N Sbjct: 108 NAFFTTVRSEANLSK------------VKKDSF---GDFAIGSLSKAVNTESVNNITVRA 152 Query: 715 -LTNYLDPTGSQKTLVFCVTNAHADMVVEELRA-AFKKKYPQLEHDAIIKITGDADKDAR 772 L N D + TLVFCV AH + E R +Y IT ++AR Sbjct: 153 WLANAQD---RKSTLVFCVDVAHTKELTETFRNYGIDARY----------ITAKTSREAR 199 Query: 773 KVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 Q R ++R +++ L T G DIP+I ++ R RSR L QM GR RL P Sbjct: 200 MEQL---RAFRDREYPVLLNCGLFTEGTDIPNIDCVLLARPTRSRNLLIQMIGRGLRLYP 256 Query: 833 EVNKTSFKIFDC--VDIYSTLES 853 + DC +D+ +TL + Sbjct: 257 GKD-------DCHVIDMVATLNT 272 >UniRef50_C1GNS0 GPI inositol-deacylase n=2 Tax=Leotiomyceta RepID=C1GNS0_PARBA Length = 1440 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 91/360 (25%), Positives = 146/360 (40%), Gaps = 70/360 (19%) Query: 495 KRILFLVDRRSLGEQA----LGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQ 550 K+ L +V R+ L EQA + A+ + I + N + +I +A+++ Sbjct: 28 KKTLIIVHRKELVEQAAKHCMLAYPEKTIEIEMGNC----------HATGTAEITIASIR 77 Query: 551 SLV-KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDH 609 SL+ K ++ +P RY I+VDEAH +I+ +YR +L++ Sbjct: 78 SLLSKGRIEKFDP---ERYKLILVDEAH--HIV-----------------APSYREVLEY 115 Query: 610 FDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSK 669 F +++ +PAL V TA ID + +D I R + V+ + Sbjct: 116 FGLNEVS-EGSPALVGVSATFSRFDGLKLGTA-IDHIVYHKDYIDMIGERWLADAVFTTV 173 Query: 670 GEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT--NYLDPTGSQK- 726 + + L + D DF G + A N A N++T +L +K Sbjct: 174 NSRAD------------LSNVADAPNGDFQTGQLSAAVNTATVNDITVRAWLSRASDRKS 221 Query: 727 TLVFCVTNAHADMVVEELRA-AFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKER 785 TLVF V H + + R +Y IT K+ R + + F + Sbjct: 222 TLVFGVDIDHVKCLTDTFRRFGIDARY----------ITSQTRKNLRTEE--LEAFRNQE 269 Query: 786 LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 P ++V L T G DIP+I ++ R RS+ L QM GR RL P K + I D V Sbjct: 270 YP-VLVNCGLFTEGTDIPNIDCVLLARPTRSKNLLIQMIGRGLRLHP--GKENCHIIDMV 326 >UniRef50_A7FVD5 Restriction/helicase domain protein n=10 Tax=Bacteria RepID=A7FVD5_CLOB1 Length = 968 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 91/388 (23%), Positives = 161/388 (41%), Gaps = 82/388 (21%) Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSI 527 L+ ATGTGKT + F +I+ K++LFLV R + ++ F+ N + + Sbjct: 249 LVIAATGTGKTYMS---AFDVIEYNP-KKMLFLVHREEILRRSEKTFKKLVKNKNKTTGL 304 Query: 528 FDIKGLTDKFPEDSTKIHVATVQSLVKR--TLQSDEPMPVARYDCIVVDEAHRGYILDKE 585 LT + +T+Q++ K+ + DE ++ IV+DEAH Sbjct: 305 -----LTGNSKAIDSDYLFSTIQTMGKQFQNFKKDE------FEYIVIDEAH-------- 345 Query: 586 QTEGELQFRSQLDYVSA--YRRILDHFD-AVKIALTATPALHTVQIFGEPVYRYTYRTAV 642 ++S+ Y R++++F+ + +TATP + G+ ++ Sbjct: 346 -------------HISSPLYERVINYFEPKFLLGMTATPE----RCDGKNIF-------- 380 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDD--QDFEVADFN- 699 I N V L + ++E + P +ED D +V D + Sbjct: 381 ------------DIFNNNVALEVRLREALELELVIPFHYFGITDIEDIDLSDVKVQDLDE 428 Query: 700 --RGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEH 757 + L + + +++ Y +K + FCV HA + +E F K+ H Sbjct: 429 IAKRLNVNKRVDFIIDKMNFYGHDGEKRKCVGFCVNIDHAKYMADE----FNKRGI---H 481 Query: 758 DAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 + TG+ + R++ +K+ L ++ TVD+ G+DIPSI I+ LR S Sbjct: 482 SVFL--TGNNSANERELYIKKLEDDKDDLE-VIFTVDIFNEGIDIPSINLILMLRPTNSP 538 Query: 818 ILYEQMKGRATRLCPEVNKTSFKIFDCV 845 I++ Q GR R P NKT + D + Sbjct: 539 IVFIQQLGRGLRKYP--NKTFLTVLDFI 564 >UniRef50_Q1NR12 Type III restriction enzyme, res subunit n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NR12_9DELT Length = 188 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/52 (55%), Positives = 37/52 (71%) Query: 458 KAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQ 509 +A+ + Q ILL MATGTGKT TA +++RL +S R KRILFL DR L +Q Sbjct: 2 EAVARDQNRILLVMATGTGKTYTAFQIIWRLWKSGRKKRILFLADRNILIDQ 53 >UniRef50_A1SXM9 Type III restriction enzyme, res subunit n=4 Tax=Gammaproteobacteria RepID=A1SXM9_PSYIN Length = 967 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 15/121 (12%) Query: 725 QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKE 784 QKTL FC++ HAD + E ++A IK K + +T+ Sbjct: 451 QKTLAFCISVKHADYMAESF------------NNAGIKAVSVHSKSEIRRNEALTQLQNG 498 Query: 785 RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDC 844 L ++ +VDL G D+P++ I+ LR S+IL+ Q GR RL NKT + D Sbjct: 499 TL-EVMFSVDLFNEGTDLPALDTILMLRPSNSKILFLQQLGRGLRL--HKNKTHLVVLDF 555 Query: 845 V 845 + Sbjct: 556 I 556 >UniRef50_A3N1J8 Type I restriction enzyme, R subunit n=4 Tax=Bacteria RepID=A3N1J8_ACTP2 Length = 1044 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 99/237 (41%), Gaps = 36/237 (15%) Query: 433 WFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTA---IAMMFRLI 489 + + GM + +RY Q A +A+ + + G+++ ++ G+GKT A + ++ Sbjct: 284 YVEEQGGMEKHVMRYPQLFATKAISRHLAAGKKKGIIWHTQGSGKTALAYYNVRVLTDFY 343 Query: 490 QSQR-FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDS------- 541 Q Q + F+VDR L QA+ F + ++ NS + K S Sbjct: 344 QRQNVIPKFYFIVDRLDLRNQAMSEFSHRGLQVNSINSREEFAQEMRKAAALSNCSGDPE 403 Query: 542 -TKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 T I++ Q+ D + V R +DEAHR F +Q V Sbjct: 404 ITVINIQKFQNSNVAEFIPDYDISVQR--IFFIDEAHRS-------------FGNQAQTV 448 Query: 601 SAYRRILDHFD--AVKIALTATPAL-------HTVQIFGEPVYRYTYRTAVIDGFLI 648 S + L D AV I LT TP L + IFG+ +++Y Y ++ DG+ + Sbjct: 449 SQFLASLIQADPSAVHIGLTGTPLLGGGKNRVGSTAIFGDYIHKYYYNQSIADGYTL 505 >UniRef50_B7GLJ0 Type I site-specific restriction-modification system, R (Restriction) subunit n=3 Tax=Bacillaceae RepID=B7GLJ0_ANOFW Length = 1020 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 107/454 (23%), Positives = 192/454 (42%), Gaps = 75/454 (16%) Query: 440 MSELGLRYYQEDAVR-AVEKAI----VKGQQEI-LLAMATGTGKTRTAIAMMFRLIQSQR 493 ++++G +Y+Q V AV +AI G ++I ++ TG+GK+ + + F I S+ Sbjct: 258 ITKVGAKYHQFFGVNFAVNEAIRATRPDGDRKIGVMYHTTGSGKSLSM--LFFAGILSRH 315 Query: 494 FK----RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATV 549 K I+ VDR L +Q F + D D + L ++ +I +T+ Sbjct: 316 PKMENPSIVIQVDRNDLDKQLHDTFVQGKSYIDHVEHAEDTEQLRTLLRGEAGQIIFSTI 375 Query: 550 QSLVKRTLQSDEPMPVARYDCIVV-DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILD 608 + K+ ++ P+ R + +V+ DEAHR Q F +QL Y Sbjct: 376 EKFRKKEGETQHPVLSKRRNIVVIADEAHRT------QAGFAGGFAAQLRYALP------ 423 Query: 609 HFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEG 664 +A I T TP HT +IFG ++RY AV D + PI +R Sbjct: 424 --NASHIGFTGTPVDFVGNHTEEIFGHIIHRYDMAQAVADKATL----PIYYESRLIP-- 475 Query: 665 VYLSKGEQVERISPQGEVINDTLEDDQDFE-----VADFNRGLVIPAFNRAVCNELTNYL 719 + LS + E+ E+I D DD++ E A + + P R + N++ ++ Sbjct: 476 LDLSAEDIDEKYK---EIIVDAGGDDEESENYKRKWAALEKVVGTPKRLRRLANDIVSHF 532 Query: 720 DPTGS--QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA---RKV 774 + + QK ++ C++ A + LR + P +E + +TGD KD R+V Sbjct: 533 NQVANPFQKAMIVCMSRRIAVDLYNYLREI--PECPPVE----VIMTGDVSKDPKEWREV 586 Query: 775 QT------MITRFNKERLP----------NIVVTVDLLTTGVDIPSICNIVFLRKVRSRI 818 Q + T+ +E + V+ VD+ TG+D + + + ++ Sbjct: 587 QPGSKYAHIKTKKEQEEVKAKLRDPEDPLKFVIVVDMWLTGMDAKPLSYLYVDKPMKGHN 646 Query: 819 LYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLE 852 L + + R R+ P K + D + I ++L+ Sbjct: 647 LIQAI-ARVNRVFP--GKEGGVVVDYIGIATSLK 677 >UniRef50_C5B0S1 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B0S1_METEA Length = 575 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 23/166 (13%) Query: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL-RAAFKK 750 D+ D + + PA V + +T + ++ T VF V AHA+ + E +A Sbjct: 273 DYHEGDLSEAMNKPAL---VADVVTTWRQRGENRPTFVFAVDRAHANHLQGEFEKAGIGC 329 Query: 751 KYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVF 810 Y DA K D R + M RF+ L ++ +V LTTGVD+ C IV Sbjct: 330 GY----IDAFTK------PDER--EAMFKRFSAGEL-RVIASVGCLTTGVDLDVRC-IVL 375 Query: 811 LRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT 856 R RS +LY Q+ GR R+ P +F D L+ DT Sbjct: 376 ARPTRSEMLYVQIIGRGLRMPP-----PHPVFGVKDTCLVLDHSDT 416 >UniRef50_A3VWG4 DNA/RNA helicase n=1 Tax=Roseovarius sp. 217 RepID=A3VWG4_9RHOB Length = 557 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 93/403 (23%), Positives = 162/403 (40%), Gaps = 89/403 (22%) Query: 445 LRYYQEDAVRAVEKAIV-KGQQEILLAMATGTGKTRTAIAMMFRLIQSQ--RFKRILFLV 501 LR YQ++AV + + G+ +++LA TG GKT ++ L + R R+L L Sbjct: 139 LRPYQQEAVSKFREGLTDTGRAQVVLA--TGLGKTVVMAEVVADLYRDNLIRDNRVLVLA 196 Query: 502 DRRSLGEQALGAF--------EDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV 553 D+R L Q F ++GD S +D I ATVQS++ Sbjct: 197 DKRELIRQLQFGFWHQLPKWVPTHMLSGDETPSFYD-------------GITFATVQSVI 243 Query: 554 KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV 613 R D P + +++DEAH +I +++RR LD + Sbjct: 244 GRI--DDLP----SFGLVLIDEAH--HIGS-----------------TSFRRALDALEPP 278 Query: 614 KIA-LTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLS 668 + TATP ++ G+P+ R + +L + D +++ N G Sbjct: 279 MVGGATATPWRGDGFDIDELLGKPLVRLGISDGLRQKYLSEVD--YRLLADNIDWGF--- 333 Query: 669 KGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTL 728 V+ IS ++ + N+ L++P + + + + Sbjct: 334 ----VQEIS------------SHNYSLNQLNKKLLMPTRDEEAARHIVEVFGGEKRRGGI 377 Query: 729 VFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPN 788 VF T HA+ LR L +AI + ++AR+ ++ F + + + Sbjct: 378 VFSPTVDHAESFAGTLRGY------GLRAEAI-----SSRQEARERDRLMAMFRRGDI-D 425 Query: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 ++ +VDL GVD+P + +VF+R SR ++ Q GR RL Sbjct: 426 VLASVDLFNEGVDVPDVDLVVFMRATHSRRIFVQQLGRGLRLS 468 >UniRef50_C3DG05 Putative uncharacterized protein n=1 Tax=Bacillus thuringiensis serovar sotto str. T04001 RepID=C3DG05_BACTS Length = 1430 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 29/195 (14%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKH------LGLLL 54 M N+ F FL+ +A A E +D + L K R+F E AK+ + + Sbjct: 1 MSNEFLFSFLQPKYKKLADVAEALEKQVYNDVPSALSKARLFAEKLAKYVMEMEDINVYY 60 Query: 55 NIPPCENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYH-NDLNDAQMCLRLGFR 113 + E H L RE +++ + F +R++GN+AVHE + + DA +L + Sbjct: 61 EMKHVEVIHKLYRE----GILNEEMHFRFEWIRKMGNKAVHEANFGSIEDALKAHKLTYD 116 Query: 114 LAVWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLT--------------LKQQLEQQVR 159 LAVW+ L D +F P + P+ Q+V T L++ LE + R Sbjct: 117 LAVWFMELYG-DVNFKAPAYASPKANA---EQKVNTDDIKQTVAETVEKSLEKTLEAKFR 172 Query: 160 EKAQTQAEVEAQQQK 174 E +T ++ +QQK Sbjct: 173 EMQETLLKLTQEQQK 187 >UniRef50_C4XFR4 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFR4_MYCFE Length = 1032 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 99/427 (23%), Positives = 179/427 (41%), Gaps = 68/427 (15%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK-----RILF 499 +RY Q A RA+ K + + ++ G+GKT + A ++I+ K R F Sbjct: 316 MRYPQFFATRAIIKRFKRTNKNGIIWHTQGSGKTALS-AFATKVIKDYWSKKKINARFFF 374 Query: 500 LVDRRSLGEQALGAFED---TRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRT 556 +VDR L QA F + +N D+ + K L + ++ I V ++ K Sbjct: 375 IVDRLDLMRQASAEFANRGFNVVNVDSKEAF--AKELNETIDRNNNGIGTICVVNIHK-- 430 Query: 557 LQSDEPMPVARYD-------CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILD- 608 MP A+ D +DEAHR Y + GE Y+ ++ Sbjct: 431 FMDSSKMPEAKNDYNIRTQRIFFIDEAHRSYTM-----HGEF-----------YKNLMTC 474 Query: 609 HFDAVKIALTATPAL----HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEG 664 D + IA+T TP L + FG+ +++Y Y ++ DG+ + + QI T A+ Sbjct: 475 DRDGIYIAMTGTPLLTKRERSNLKFGDYIHKYFYDKSIADGYTL-RIKKEQIKTE-ARAT 532 Query: 665 VYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC-NELTNYLDPTG 723 + + ++E++ + +I ++ DD V+ + I R +C N+LT G Sbjct: 533 IIRNLNIEIEKL--ESRIIYES--DDYVKSVSQYIEKDFIDF--RFICRNDLT-----IG 581 Query: 724 SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNK 783 ++ C +N A + E + K + D + + +K+ +K F + Sbjct: 582 G---MIVCRSNDQAKKIHEWFKKNSKLTTGLVLSDTDNPLQDNINKNNQKT------FKE 632 Query: 784 ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK--- 840 P+I+V +LTTG D+ + + LR +++ L + + R R N ++ Sbjct: 633 SNYPDILVVHYMLTTGYDVKRLKKMYLLRGPKAQNLLQTI-SRVNRPYRSPNGQEYQYGY 691 Query: 841 IFDCVDI 847 I D +DI Sbjct: 692 IVDFIDI 698 >UniRef50_Q2NH26 Putative type I restriction-modification system, restriction subunit n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NH26_METST Length = 902 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 31/212 (14%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ+ AV + + K +Q + TG+GKT T+ L + +++F+VDR+ Sbjct: 237 LRAYQKYAVEEIIRQATKIKQNGYVWHTTGSGKTLTSFKTSQILSEDPNIDKVVFVVDRK 296 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL--VKRTLQSDEP 562 L Q + F + D+ +++ L K TK+ + T+Q L V Q+ Sbjct: 297 DLDTQTMKRF--NQYEKDSVAKVYNTYSLIKKLNSSKTKLIITTIQKLSNVATKHQTKVA 354 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATP 621 + + DE HR + ++ I+D F +++ T TP Sbjct: 355 QMKDKRIIFIYDECHRS------------------QFGKMHQSIIDFFTNSLCFGFTGTP 396 Query: 622 AL--------HTVQIFGEPVYRYTYRTAVIDG 645 T IFG+ ++ Y + A+ D Sbjct: 397 IFVENSGGNKTTKTIFGKRLHTYMIKDAIRDN 428 >UniRef50_D2SCI9 Type III restriction protein res subunit n=2 Tax=Actinomycetales RepID=D2SCI9_9ACTO Length = 1035 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 30/176 (17%) Query: 448 YQEDAVRAVE-KAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSL 506 YQ++ + A++ + V G+ L+ MATGTGKT + RL +S R+LF+ R L Sbjct: 322 YQQEILEALDAERTVHGRWRNLVVMATGTGKTVVSALDFRRLRESGMVDRLLFVAHREEL 381 Query: 507 GEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVA 566 Q+ GD F +F + + P + + +VQSL + L +P + Sbjct: 382 LTQSHSTLRHVLRQGD-FGELF----VGGQRPREWRHV-FGSVQSLNQLDLGELDP---S 432 Query: 567 RYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATP 621 +D ++VDE H S YRR+L+H V + LTATP Sbjct: 433 HFDVVIVDEFHHA-------------------EASTYRRLLEHLKPTVLLGLTATP 469 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 16/138 (11%) Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL-RAAFKKKYPQLEHDAIIKITGDA 767 R V + + ++ G + L FCV+ HA + + RA + A+ + Sbjct: 542 RLVLQAVKDKVEDPGRMRALGFCVSIQHAQYMADRFTRAGIPSR-------AVTSTSSRE 594 Query: 768 DKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 ++ A N ++ TVDL G+DIP++ ++FLR S ++ Q GR Sbjct: 595 ERAAALAALRDRAVN------VLFTVDLFNEGLDIPTVDTVLFLRPTESATVFLQQLGRG 648 Query: 828 TRLCPEVNKTSFKIFDCV 845 RL +K + D + Sbjct: 649 LRLAE--DKACLTVLDFI 664 >UniRef50_C9B3B0 Type I restriction enzyme n=1 Tax=Enterococcus faecium 1,231,501 RepID=C9B3B0_ENTFC Length = 1024 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 39/228 (17%) Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFE----------DTRING 521 TG+GKT T+ + + +++FLVDR +L Q A+ T + Sbjct: 301 TTGSGKTITSFKTAWLASRLPNVDKVIFLVDRIALTNQTADAYRAYDPVAGFEGKTGVVS 360 Query: 522 DTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYI 581 DT N I L K + S K + T + R + + P+ +VDEAHR Sbjct: 361 DTAN----ISDLHRKLTKKSDKNIIVTSIQKMSRYVTKENFKPLDDNILFIVDEAHRS-T 415 Query: 582 LDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPAL-HTVQIFGEPVYRYTYRT 640 D Q EG L+ + SA+ + T TP T +IFG+ ++ YT + Sbjct: 416 GDGTQNEGMLETIRKALPTSAW-----------VGYTGTPKFPETREIFGDLLHAYTIKE 464 Query: 641 AVID----GFLID--------QDPPIQIITRNAQEGVYLSKGEQVERI 676 A+ D GF ++ +DP + I N + VY E VE + Sbjct: 465 AIADKNVLGFKVEFKETIEPPKDPTEEDIDDNIRGSVYDYSPEHVELV 512 >UniRef50_A7FML4 Type I site-specific deoxyribonuclease, HsdR family n=25 Tax=Bacteria RepID=A7FML4_YERP3 Length = 1082 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 100/244 (40%), Gaps = 49/244 (20%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMA-------------TGTGKTRTAIAMMFRLIQS 491 +R YQ A A+ + K + L + A TG+GKT T+ + QS Sbjct: 264 MRSYQYYAANAISDKVAKTNWQQLGSAANNPDRLGGYVWHTTGSGKTMTSFKSAQLIAQS 323 Query: 492 QRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDST--KIHVATV 549 + +++FL+DR LG Q+L + + +G+ + + L K +T + V+++ Sbjct: 324 KDADKVIFLMDRIELGTQSLAEYRNFAGDGEDVQATENTHVLITKLKSSATADTLIVSSI 383 Query: 550 QSLVK----------RTLQSDEPMPVARYDCIVVDEAHRGYIL-DKEQTEGELQFRSQLD 598 Q + T +D A+ ++DEAHR + KE EG L Sbjct: 384 QKMSNIFEEVDDEGTATNSADIEKIRAKRLVFIIDEAHRSTMSGGKENKEGML------- 436 Query: 599 YVSAYRRILDHF-DAVKIALTATPALH---------TVQIFGEPVYRYTYRTAVIDGFLI 648 RI F A+ T TP +H T +FG ++RY+ + DG ++ Sbjct: 437 -----VRIKKTFPKALFFGFTGTP-IHDENQVNSNTTADVFGNELHRYSIADGIRDGNVL 490 Query: 649 DQDP 652 DP Sbjct: 491 GFDP 494 >UniRef50_A0YWD0 Putative helicase n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YWD0_9CYAN Length = 571 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 15/152 (9%) Query: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKK 751 DF + + PA +A + NY + TLV+ V HA + +E Sbjct: 244 DFAIGELELRCNAPAVVKATVD---NYERLCPQRLTLVYAVGVKHAQSLFQE-------- 292 Query: 752 YPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFL 811 + H + + +D++ ++ F++ + I++ V + +TG D P + I+ Sbjct: 293 FTNRGHTSALVTAKTSDEERLQI---FDSFSQGDV-KILINVGVCSTGFDRPEVSCIILA 348 Query: 812 RKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 R +S+ LY QM GR RLCP+ K+ I D Sbjct: 349 RPTQSKALYVQMIGRGMRLCPQQGKSDCLILD 380 >UniRef50_B8D1X7 Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1X7_HALOH Length = 1010 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 95/380 (25%), Positives = 156/380 (41%), Gaps = 84/380 (22%) Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPAR--LNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 D V+F+ PI V+E K + ID P + + RY +RE LE +++ Sbjct: 143 DIVVFINGIPIGVIECKVDTIDEPEEKAIEQLRRYQN------IREYDLEE-GAEQLFYT 195 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDT-RNMSKALPE-- 412 +W+D++ P R+++A W T N++K + E Sbjct: 196 NQVLVAAWKDSASASTIGAP------ARQFKA--------WKDPYPSTIDNITKLVGEEP 241 Query: 413 ---------WHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAV-RAVEKAIVK 462 + E LL+++ Q + + G+ + RY Q AV +AVE+ +K Sbjct: 242 TMQDILLYSMFKKERLLDLI----QNFIVFEREGNGIVKKLARYQQYRAVCKAVER--IK 295 Query: 463 GQQEILLAMAT-----GTGKTRTAIAMMFRLIQSQRFKRI-----LFLVDRRSLGEQALG 512 +++ T G+GK+ T M+F ++ +R K + L + DRR L EQ G Sbjct: 296 NARKLTERSGTVWHTQGSGKSLT---MLFLALKLRRMKELENPTLLIVTDRRDLDEQITG 352 Query: 513 AFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDC-- 570 F+ +K L +K D+ K + TVQ +R ++ PV D Sbjct: 353 TFKKCGFPNPIRAK--SVKDLKEKLRLDAGKTIMTTVQKFQER---DNDKYPVLSEDTNI 407 Query: 571 -IVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHT 625 ++VDEAHR Q++ D + RR L + A + T TP A T Sbjct: 408 FVMVDEAHRT------------QYK---DLAANMRRALPN--ACYLGFTGTPIDKKARST 450 Query: 626 VQIFGEPVYRYTYRTAVIDG 645 ++ FG + YT +V DG Sbjct: 451 IRTFGTYIDTYTIEESVEDG 470 >UniRef50_A6EW89 Helicase-related protein n=3 Tax=Gammaproteobacteria RepID=A6EW89_9ALTE Length = 1282 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 21/124 (16%) Query: 726 KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKER 785 +TL FCV+ HAD + ++ F +K + + + + + + E+ Sbjct: 626 RTLAFCVSRVHADFMADQ----FSRK-------GVRSAAVHGESEMSRGEAL------EK 668 Query: 786 LPN----IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKI 841 L N ++ +VDL GVD+P+I ++ LR S+IL+ Q GR R K I Sbjct: 669 LENGQLDVIFSVDLFNEGVDLPAIDTVLLLRPTESKILFLQQIGRGLRKSSATGKDKLVI 728 Query: 842 FDCV 845 D V Sbjct: 729 LDFV 732 >UniRef50_C2PS26 Type I restriction enzyme, endonuclease subunit n=2 Tax=Firmicutes RepID=C2PS26_BACCE Length = 1018 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 93/228 (40%), Gaps = 39/228 (17%) Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFE----------DTRING 521 TG+GKT T+ + + +++FLVDR +L Q A++ T + Sbjct: 295 TTGSGKTITSFKTAWLASRLSNVDKVIFLVDRIALTNQTADAYKAYDPVAGFEGKTGVVS 354 Query: 522 DTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYI 581 DT N I L K + S K + T + R + D P+ +VDEAHR Sbjct: 355 DTAN----ISDLHRKLTKKSDKNIIVTSIQKMSRYVARDSFKPLNESILFIVDEAHRS-T 409 Query: 582 LDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPAL-HTVQIFGEPVYRYTYRT 640 D + EG L+ + SA+ + T TP T +IFG+ ++ YT + Sbjct: 410 GDGTENEGMLETIRKAIPNSAW-----------VGYTGTPKFPETREIFGDILHAYTIKE 458 Query: 641 AVID----GFLID--------QDPPIQIITRNAQEGVYLSKGEQVERI 676 A+ D GF ++ +DP I N + VY E V + Sbjct: 459 AIADKNVLGFNVEFKETIEAPEDPTEADIDDNVRGSVYDYSPEHVNLV 506 >UniRef50_Q1NXV3 Helicase-like:Peptidase S24, S26A and S26B:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NXV3_9DELT Length = 1196 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 88/378 (23%), Positives = 137/378 (36%), Gaps = 84/378 (22%) Query: 462 KGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING 521 +G + L+ MATG GKT A +R+LF+ R + +QA F R Sbjct: 428 EGYRRGLVVMATGLGKTWLAAFDAGHCTA----RRVLFVAHREEILQQAAATFLRIRPRA 483 Query: 522 DTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYI 581 + F + D + A++Q+L + + +D +VVDE H Sbjct: 484 ---RAGFYLGRQRDA----EVDLLFASIQTLARSEHLAR--FAADHFDYVVVDEFHHAA- 533 Query: 582 LDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQIFGEPVYRYTYRT 640 + YRR+L HF+ + LTATP RT Sbjct: 534 ------------------AATYRRLLRHFNPRFLLGLTATPE----------------RT 559 Query: 641 AVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNR 700 DQ + + N L+ G + ++P + D+ + Sbjct: 560 --------DQSDILSLCDDNLVYSCNLADGINAQLLAPFH--YYGIYDQSVDYREIPWRN 609 Query: 701 GLVIPAFNRAVCNELTNYLDP---------TGSQKTLVFCVTNAHADMVVEELRAAFKKK 751 G P A+ N+L G ++TL FCV+ HA+ + ++ A Sbjct: 610 GRFDPD---ALVNKLATLARARHALEQWRQQGGKRTLAFCVSVRHAEFMADQFSQAGIAA 666 Query: 752 YPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFL 811 AI + GDA + R RL ++ VDL GVD+P I ++ L Sbjct: 667 AAVYAGAAISR--GDA----------LARLRDNRL-RVIFAVDLFNEGVDLPEIDTVMML 713 Query: 812 RKVRSRILYEQMKGRATR 829 R S+IL+ Q GR R Sbjct: 714 RPTDSKILFLQQLGRGLR 731 >UniRef50_A8ZTH8 Type III restriction protein res subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTH8_DESOH Length = 619 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 81/384 (21%), Positives = 153/384 (39%), Gaps = 61/384 (15%) Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFED---------TR 518 +L + G GKT + F + Q + L RR + A D T Sbjct: 46 ILQIPVGCGKTGLMALLPFGIAQGRVLVIAPNLEIRRGISTAFDIAGRDCFWTYTRVLTD 105 Query: 519 INGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHR 578 +N + ++ D + E+S I V +Q L R + P +D I+VDE H Sbjct: 106 VNHGPYTAVLDGQDANIHDCENS-HIVVTNIQQLASRADRWLPAFPDDFFDLIMVDEGHH 164 Query: 579 GYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI-ALTATPAL-HTVQIFGEPVYRY 636 + ++ R+ + F K+ +LTATP +I GE VY Y Sbjct: 165 -------------------NVARSWERVFERFPNAKVVSLTATPFRGDGREIAGEVVYAY 205 Query: 637 TYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLE-DDQDFEV 695 +RTA++ G++ I + QE + +G+ + +++ L+ D+++ Sbjct: 206 PFRTAMVRGYI----KQITAVNVAPQEISFTYRGDS------RHHTLDEVLQLRDEEW-- 253 Query: 696 ADFNRGLVI-PAFNRAVCN---ELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKK 751 F+RG+ + P NR++ + + +L +G+ L+ + V L A Sbjct: 254 --FSRGVALAPECNRSIVDASIQWLQHLRESGTFHQLIAVACSVDHSRQVRSLYAERGLN 311 Query: 752 YPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFL 811 ++ ++ A +++ ++ + R+ + +V V +L G D P++ Sbjct: 312 AREIH----------SNMPADQIEEVLQDLRRSRI-DCIVQVRMLGEGFDHPNLSVAAIF 360 Query: 812 RKVRSRILYEQMKGRATRLCPEVN 835 + RS Y Q GR R+ + N Sbjct: 361 QPFRSLSPYVQFIGRVMRVIHQNN 384 >UniRef50_D2P9I1 Type I restriction enzyme, R subunit n=17 Tax=Bacilli RepID=D2P9I1_LISMO Length = 1020 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 32/194 (16%) Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFED----------TRING 521 TG+GKT T+ + L + R K +LF+VDR L +Q L F+ ++NG Sbjct: 317 TTGSGKTVTSFKVAQLLASAPRIKNVLFIVDRIDLIDQTLENFKSFAYAHFKNRIKKVNG 376 Query: 522 DTFNSIFDIKGLTDKFPEDSTKIHVATVQSL---VKRTLQSDEPMPVARYDCIVVDEAHR 578 KG S++I + +VQ L VK+ L++D+ ++ I++DEAHR Sbjct: 377 RELKRELKRKG--------SSQILLISVQGLTKAVKKGLENDD------WNVIIMDEAHR 422 Query: 579 GYILDKEQ-TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYT 637 + + + L+ + + D + VK T + T IFG+ ++ YT Sbjct: 423 SASGESVKLIKKALKKTTWFGFTGTPNFYSDEINDVK----TTREISTHDIFGKRLHTYT 478 Query: 638 YRTAVIDGFLIDQD 651 + A+ DG ++ D Sbjct: 479 IKDAIGDGNVLGFD 492 >UniRef50_UPI000197676D type I site-specific deoxyribonuclease HsdR family subfamily protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI000197676D Length = 970 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 78/372 (20%), Positives = 144/372 (38%), Gaps = 51/372 (13%) Query: 288 KDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHY 347 KD+ D + + P+ VE KR +++ +N+ RY K G R L Sbjct: 123 KDDVAYTNRYDVTILINGLPVVQVELKRPGVEINEAINQINRYRKFSFKGLFRYLQLFVV 182 Query: 348 SPDEVHEAVPEYETSWQDTSGKQRFKIPFCYST--NGREYRATMKTKSGIWYRDVRDTRN 405 S S + ++ FC +G Y +K+ W D N Sbjct: 183 S-----------------NSVQTKY---FCNENEMDGGSYNPILKSLVFFWTDDKNKRIN 222 Query: 406 -MSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ 464 + + ++ R + EML K P + + +R YQ AV+A ++ +++ Sbjct: 223 KLDEFTADFLRRSTITEML----DKYMVIKTTEPVL--MVMRPYQIYAVKAAKRRVLESN 276 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQAL---GAFEDTRING 521 Q + TG+GKT T+ + L R +++FL+DR+ L +Q + +FE ++G Sbjct: 277 QNGYVFACTGSGKTLTSFKLAQLLRDEPRVDKVIFLIDRKDLDDQTVDEYNSFEKGCVDG 336 Query: 522 DTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV--------KRTLQSDEPMPVARYDCIVV 573 ++ L + + + V T+Q + +R + S V ++ Sbjct: 337 SDSTAV-----LVKQLGQADRGLIVTTIQKMANAVKGKRYERLMDSYRDKKV----VFII 387 Query: 574 DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPV 633 DE HR K + E FR+ +Y+ + + K T ++ + Sbjct: 388 DECHRSQ-FGKMHGDIERHFRNA-NYIGFTGTPIFEANKGKDGRTTADVFYSGSKLDSCL 445 Query: 634 YRYTYRTAVIDG 645 +RY + A+ DG Sbjct: 446 HRYMIKDAIADG 457 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P08956 Type I restriction enzyme EcoKI R protein n=52 T... 1443 0.0 UniRef50_Q2P0A6 Type I restriction-modification system R subunit... 1058 0.0 UniRef50_A4VH90 Type I restriction-modification system, R subuni... 1055 0.0 UniRef50_C3MF99 Putative restriction endonuclease type I with R ... 1044 0.0 UniRef50_B5W466 Type III restriction protein res subunit n=2 Tax... 1039 0.0 UniRef50_B2J091 Type III restriction enzyme, res subunit n=1 Tax... 1034 0.0 UniRef50_Q210K0 Type III restriction enzyme, res subunit n=4 Tax... 1022 0.0 UniRef50_Q7UK96 Type I restriction enzyme EcoKI R protein n=3 Ta... 1017 0.0 UniRef50_C4KDM8 Type III restriction protein res subunit n=4 Tax... 1014 0.0 UniRef50_B6R0S4 Type III restriction enzyme, res subunit family ... 1003 0.0 UniRef50_B2A6M4 Type III restriction protein res subunit n=5 Tax... 999 0.0 UniRef50_C6CZ63 Type III restriction protein res subunit n=3 Tax... 988 0.0 UniRef50_A6TLK4 Type III restriction protein, res subunit n=3 Ta... 978 0.0 UniRef50_B0QS40 Type III restriction enzyme, res subunit n=1 Tax... 977 0.0 UniRef50_C7GDQ4 Type I restriction-modification system, R subuni... 963 0.0 UniRef50_C6JN68 Type I restriction enzyme EcoKI subunit R n=4 Ta... 913 0.0 UniRef50_Q26D94 Type I restriction-modification system, R subuni... 889 0.0 UniRef50_C3WJB8 Type III restriction protein n=2 Tax=Fusobacteri... 871 0.0 UniRef50_A8YW16 Type I restriction modification system n=1 Tax=L... 870 0.0 UniRef50_C0XBA4 Type I restriction enzyme EcoKI subunit R n=6 Ta... 845 0.0 UniRef50_A7I737 Type III restriction enzyme, res subunit n=5 Tax... 596 e-168 UniRef50_B0JHV9 Type III restriction enzyme res subunit n=4 Tax=... 566 e-159 UniRef50_Q21ZK0 Type III restriction enzyme, res subunit n=17 Ta... 561 e-158 UniRef50_C7D879 Type I restriction enzyme, R protein n=1 Tax=Tha... 560 e-157 UniRef50_A1BGJ2 Type III restriction enzyme, res subunit n=21 Ta... 559 e-157 UniRef50_Q112D5 Type III restriction enzyme, res subunit n=1 Tax... 557 e-157 UniRef50_D0SUQ0 Predicted protein n=5 Tax=Moraxellaceae RepID=D0... 556 e-156 UniRef50_UPI0001B4DA31 type III restriction enzyme, res subunit ... 554 e-156 UniRef50_A6DQ75 Type I restriction-modification system R subunit... 552 e-155 UniRef50_Q0W4T5 Type I restriction modification system, restrict... 546 e-153 UniRef50_D1XTB5 Type III restriction protein res subunit n=2 Tax... 542 e-152 UniRef50_Q1GLF8 Type I restriction-modification system restricti... 539 e-151 UniRef50_UPI000050FFCE type III restriction enzyme, res subunit ... 538 e-151 UniRef50_B7RYA9 Type III restriction enzyme, res subunit family ... 537 e-151 UniRef50_B4RYU7 Type I site-specific restriction-modification sy... 534 e-150 UniRef50_A0KWT8 Type III restriction enzyme, res subunit n=7 Tax... 531 e-149 UniRef50_C0VSE4 Type I site-specific deoxyribonuclease n=2 Tax=C... 530 e-148 UniRef50_Q0AZK4 Type I restriction-modification system R subunit... 529 e-148 UniRef50_B5YGZ8 Type I site-specific deoxyribonuclease n=6 Tax=B... 529 e-148 UniRef50_C4LDI1 Type III restriction protein res subunit n=4 Tax... 528 e-148 UniRef50_A6W081 Type III restriction protein res subunit n=3 Tax... 526 e-147 UniRef50_C6LMG2 Type I restriction-modification system, R subuni... 526 e-147 UniRef50_B1VEN8 Type I restriction-modification system, restrict... 524 e-146 UniRef50_C8W942 Type III restriction protein res subunit n=5 Tax... 523 e-146 UniRef50_Q0ATD1 Type III restriction enzyme, res subunit n=4 Tax... 522 e-146 UniRef50_C6Q0A8 Type III restriction protein res subunit n=1 Tax... 518 e-145 UniRef50_C0E6A8 Putative uncharacterized protein n=1 Tax=Coryneb... 518 e-145 UniRef50_Q043T1 Type I site-specific restriction-modification sy... 512 e-143 UniRef50_C4ZF20 Type I restriction-modification system R subunit... 511 e-143 UniRef50_B8ECU5 Type III restriction protein res subunit n=5 Tax... 510 e-142 UniRef50_A2TPW6 Type I restriction enzyme, R protein n=1 Tax=Dok... 507 e-141 UniRef50_UPI000196AC3A hypothetical protein CATMIT_00264 n=1 Tax... 502 e-140 UniRef50_Q04L29 Type I restriction-modification system, R subuni... 500 e-139 UniRef50_D1C5W5 Type III restriction protein res subunit n=1 Tax... 493 e-137 UniRef50_C2CT05 Type I site-specific deoxyribonuclease n=3 Tax=C... 475 e-132 UniRef50_B3CDF9 Putative uncharacterized protein n=1 Tax=Bactero... 473 e-131 UniRef50_A5KNP7 Putative uncharacterized protein n=1 Tax=Ruminoc... 472 e-131 UniRef50_B0URP6 Type III restriction protein res subunit n=7 Tax... 454 e-125 UniRef50_Q7VGA4 Putative uncharacterized protein n=1 Tax=Helicob... 451 e-125 UniRef50_A4T8B3 Type III restriction enzyme, res subunit n=6 Tax... 440 e-121 UniRef50_B5GJX6 Type I site-specific deoxyribonuclease protein R... 422 e-116 UniRef50_C3QTD9 Type I restriction enzyme EcoKI R protein n=3 Ta... 419 e-115 UniRef50_C6A4W6 Type III restriction enzyme, res subunit n=1 Tax... 415 e-114 UniRef50_B7JWD2 EcoEI R domain protein n=2 Tax=Bacteria RepID=B7... 413 e-113 UniRef50_Q73J29 Type I restriction-modification system, R subuni... 409 e-112 UniRef50_B9M295 Type III restriction protein res subunit n=2 Tax... 406 e-111 UniRef50_D1W5U0 DEAD/DEAH box helicase n=1 Tax=Prevotella buccal... 404 e-110 UniRef50_C4XDR7 Putative uncharacterized protein n=1 Tax=Mycopla... 401 e-110 UniRef50_D2LA91 Type I site-specific deoxyribonuclease n=1 Tax=D... 399 e-109 UniRef50_A6L7V1 Type I restriction enzyme EcoKI R protein n=11 T... 397 e-108 UniRef50_A5TW30 Type I site-specific deoxyribonuclease restricti... 392 e-107 UniRef50_C6BRN4 Type I site-specific deoxyribonuclease n=2 Tax=P... 391 e-106 UniRef50_B1Y673 EcoEI R domain protein n=12 Tax=Bacteria RepID=B... 387 e-105 UniRef50_A5UR94 Type III restriction enzyme, res subunit n=5 Tax... 386 e-105 UniRef50_Q07736 Type I restriction enzyme EcoAI R protein n=63 T... 386 e-105 UniRef50_B8CZR6 EcoEI R domain protein n=5 Tax=Firmicutes RepID=... 384 e-104 UniRef50_Q167L8 Type I restriction enzyme subunit, putative n=11... 383 e-104 UniRef50_C9KLJ8 Type I restriction-modification system, R subuni... 383 e-104 UniRef50_B3H2F8 Type I restriction enzyme R protein n=2 Tax=Acti... 378 e-103 UniRef50_Q7MPU7 Type I site-specific restriction-modification sy... 378 e-102 UniRef50_C9RRX7 Type I site-specific deoxyribonuclease n=1 Tax=F... 378 e-102 UniRef50_B9MGJ1 EcoEI R domain protein n=4 Tax=Proteobacteria Re... 378 e-102 UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax... 377 e-102 UniRef50_A8ZXE8 Type III restriction protein res subunit n=9 Tax... 373 e-101 UniRef50_B5FA21 Type I restriction-modification system, R subuni... 373 e-101 UniRef50_UPI0001BC3736 type I restriction-modification system, R... 373 e-101 UniRef50_D0KYE6 Type I site-specific deoxyribonuclease n=2 Tax=P... 369 e-100 UniRef50_Q47281 Type I restriction enzyme EcoEI R protein n=45 T... 369 e-100 UniRef50_A1SRA3 Type III restriction enzyme, res subunit n=4 Tax... 369 e-100 UniRef50_A3CUH7 Type III restriction enzyme, res subunit n=3 Tax... 369 e-100 UniRef50_C2CJE8 Type I site-specific deoxyribonuclease n=5 Tax=F... 368 e-100 UniRef50_C7P6A6 Type I site-specific deoxyribonuclease n=1 Tax=M... 368 e-100 UniRef50_C9MRT3 Type I restriction-modification system, R subuni... 366 3e-99 UniRef50_A4FZ35 Type III restriction enzyme, res subunit n=1 Tax... 365 5e-99 UniRef50_Q4HNM6 Type I restriction-modification system, R subuni... 364 1e-98 UniRef50_A0Q726 Type I restriction-modification system, subunit ... 360 2e-97 UniRef50_A8ZY57 Type III restriction protein res subunit n=1 Tax... 355 5e-96 UniRef50_B6ALE7 Putative DEAD/DEAH box helicase n=1 Tax=Leptospi... 354 8e-96 UniRef50_B2IMB0 Type I restriction-modification system, R subuni... 353 4e-95 UniRef50_Q5NWL0 Type I restriction-modification system (Restrict... 349 4e-94 UniRef50_A5GB17 Type III restriction enzyme, res subunit n=1 Tax... 346 3e-93 UniRef50_C8PRL3 Type I restriction-modification system, R subuni... 340 2e-91 UniRef50_A6LX80 Type III restriction protein, res subunit n=15 T... 339 5e-91 UniRef50_C4WKW0 Type I restriction enzyme EcoEI R protein n=2 Ta... 338 1e-90 UniRef50_A3RQ88 Type I restriction-modification system restricti... 336 5e-90 UniRef50_C3NN84 Type III restriction protein res subunit n=1 Tax... 329 4e-88 UniRef50_B5Y627 Type I restriction-modification system, R subuni... 326 4e-87 UniRef50_C9LYN5 Type I restriction-modification system R subunit... 323 3e-86 UniRef50_C2CPV5 Restriction modification enzyme r subunit protei... 322 7e-86 UniRef50_B5H9V0 Type III restriction enzyme n=1 Tax=Streptomyces... 319 4e-85 UniRef50_Q8EUU6 Type I restriction-modification system R subunit... 303 3e-80 UniRef50_B3EE95 Type III restriction protein res subunit n=4 Tax... 302 4e-80 UniRef50_C5DHE1 KLTH0E03630p n=2 Tax=Saccharomycetaceae RepID=C5... 297 1e-78 UniRef50_Q4P241 Putative uncharacterized protein n=1 Tax=Ustilag... 271 9e-71 UniRef50_A7HMW9 Type III restriction protein res subunit n=1 Tax... 271 1e-70 UniRef50_A4XFJ4 Type III restriction enzyme, res subunit n=1 Tax... 270 2e-70 UniRef50_B6H0F8 Pc12g06640 protein n=12 Tax=Leotiomyceta RepID=B... 267 2e-69 UniRef50_Q06683 Putative ATP-dependent helicase IRC3 n=6 Tax=Sac... 264 2e-68 UniRef50_A4QW28 Putative uncharacterized protein n=2 Tax=Sordari... 263 3e-68 UniRef50_D0DSQ0 Phage DEAD box family helicase n=2 Tax=Lactobaci... 262 8e-68 UniRef50_B6QJS8 DEAD/DEAH box helicase, putative n=1 Tax=Penicil... 261 9e-68 UniRef50_Q6C2M8 YALI0F06534p n=1 Tax=Yarrowia lipolytica RepID=Q... 261 1e-67 UniRef50_Q6CMW9 KLLA0E17095p n=2 Tax=cellular organisms RepID=Q6... 259 3e-67 UniRef50_B2AZI6 Predicted CDS Pa_3_4550 n=6 Tax=Leotiomyceta Rep... 259 5e-67 UniRef50_Q5KCW6 DEAD box family helicase, putative n=1 Tax=Filob... 259 7e-67 UniRef50_C5DW03 ZYRO0D10802p n=1 Tax=Zygosaccharomyces rouxii Re... 258 9e-67 UniRef50_C7N5J4 DNA/RNA helicase, superfamily II n=1 Tax=Slackia... 258 1e-66 UniRef50_Q759H6 ADR302Wp n=1 Tax=Eremothecium gossypii RepID=Q75... 257 1e-66 UniRef50_B1IDR5 Restriction/helicase domain protein n=19 Tax=cel... 257 2e-66 UniRef50_B8MIT3 DEAD/DEAH box helicase, putative n=1 Tax=Talarom... 257 2e-66 UniRef50_C6R8F6 Type III restriction enzyme, res subunit n=5 Tax... 256 5e-66 UniRef50_B3CKZ8 Putative carboxylic ester hydrolase n=1 Tax=Prop... 255 7e-66 UniRef50_Q6FK44 Similar to uniprot|Q06683 Saccharomyces cerevisi... 255 9e-66 UniRef50_Q6BK09 DEHA2F25828p n=5 Tax=Saccharomycetaceae RepID=Q6... 254 2e-65 UniRef50_Q03EF5 DNA or RNA helicase of superfamily II n=1 Tax=Pe... 254 2e-65 UniRef50_A9UTX7 Predicted protein n=1 Tax=Monosiga brevicollis R... 253 3e-65 UniRef50_C0QBM3 RecQ1 n=2 Tax=Desulfobacterium autotrophicum HRM... 253 3e-65 UniRef50_Q59PU6 Putative uncharacterized protein n=1 Tax=Candida... 253 4e-65 UniRef50_C6HZP0 Type III restriction enzyme, res subunit n=1 Tax... 252 4e-65 UniRef50_A9GJE0 Putative helicase n=1 Tax=Sorangium cellulosum '... 252 6e-65 UniRef50_C6R1X3 Helicase n=1 Tax=Rothia mucilaginosa ATCC 25296 ... 252 7e-65 UniRef50_B5CWI1 Putative uncharacterized protein n=1 Tax=Bactero... 250 2e-64 UniRef50_B1YFS4 Type III restriction protein res subunit n=1 Tax... 250 2e-64 UniRef50_P33919 Uncharacterized protein yejH n=254 Tax=Proteobac... 250 2e-64 UniRef50_UPI000050FF3C type I site-specific deoxyribonuclease, H... 249 4e-64 UniRef50_A0LI77 Type III restriction enzyme, res subunit n=6 Tax... 249 5e-64 UniRef50_D2MPK0 DEAD/DEAH box helicase n=2 Tax=Firmicutes RepID=... 248 9e-64 UniRef50_A7HHG6 Type III restriction protein res subunit n=8 Tax... 247 1e-63 UniRef50_B1YI12 Type III restriction protein res subunit n=1 Tax... 247 3e-63 UniRef50_A5DU02 Putative uncharacterized protein n=1 Tax=Loddero... 247 3e-63 UniRef50_B0CPP8 Predicted protein n=4 Tax=Agaricomycetes RepID=B... 246 4e-63 UniRef50_A1SXM9 Type III restriction enzyme, res subunit n=4 Tax... 246 4e-63 UniRef50_B0SD57 DNA or RNA helicase of superfamily II n=5 Tax=Ba... 246 4e-63 UniRef50_A3EQ89 Putative helicase n=1 Tax=Leptospirillum rubarum... 245 5e-63 UniRef50_Q1NXV3 Helicase-like:Peptidase S24, S26A and S26B:Type ... 245 7e-63 UniRef50_C9M6T4 DNA/RNA helicase n=1 Tax=Jonquetella anthropi E3... 245 7e-63 UniRef50_C8P3G7 Helicase n=1 Tax=Erysipelothrix rhusiopathiae AT... 245 7e-63 UniRef50_C0VZ55 ATP-dependent helicase n=1 Tax=Actinomyces coleo... 245 1e-62 UniRef50_C0XQJ4 Possible helicase n=2 Tax=Corynebacterium RepID=... 245 1e-62 UniRef50_D1BZV1 Type III restriction protein res subunit n=1 Tax... 244 1e-62 UniRef50_C2RWF5 Type III restriction protein res subunit n=1 Tax... 244 1e-62 UniRef50_Q1WS72 DNA/RNA helicase, DEAD/DEAH box family n=14 Tax=... 244 2e-62 UniRef50_D2SCI9 Type III restriction protein res subunit n=2 Tax... 244 2e-62 UniRef50_B9W8D3 Putative uncharacterized protein n=4 Tax=Candida... 242 6e-62 UniRef50_B9ZK35 Type III restriction protein res subunit n=1 Tax... 242 9e-62 UniRef50_A6EW89 Helicase-related protein n=3 Tax=Gammaproteobact... 240 2e-61 UniRef50_Q3B4P0 DEAD/DEAH box helicase-like n=2 Tax=Bacteria Rep... 240 2e-61 UniRef50_A5UL17 Helicase n=3 Tax=Methanobrevibacter smithii RepI... 239 4e-61 UniRef50_C4L054 Type III restriction protein res subunit n=70 Ta... 239 5e-61 UniRef50_B0TQK0 Type III restriction protein res subunit n=22 Ta... 239 5e-61 UniRef50_C0GPL2 Type III restriction protein res subunit n=1 Tax... 239 6e-61 UniRef50_Q0AY89 DNA or RNA helicases of superfamily II-like prot... 238 9e-61 UniRef50_D2Q5U4 DNA/RNA helicase (DEAD/DEAH box family) n=7 Tax=... 238 1e-60 UniRef50_A1SY30 Type III restriction enzyme, res subunit n=3 Tax... 238 1e-60 UniRef50_Q027W9 Type III restriction enzyme, res subunit n=1 Tax... 237 2e-60 UniRef50_B8I140 Type III restriction protein res subunit n=16 Ta... 237 2e-60 UniRef50_Q5FLU2 Phage related helicase n=3 Tax=Lactobacillus aci... 237 2e-60 UniRef50_A3Z7D3 Putative ATP-dependent helicase n=3 Tax=Chroococ... 237 2e-60 UniRef50_C4R463 Putative uncharacterized protein n=1 Tax=Pichia ... 237 2e-60 UniRef50_Q6M621 Predicted HKD family nuclease n=5 Tax=Corynebact... 236 3e-60 UniRef50_A7FVD5 Restriction/helicase domain protein n=10 Tax=Bac... 236 4e-60 UniRef50_A4IPV6 DNA/RNA helicase n=15 Tax=Bacillaceae RepID=A4IP... 236 5e-60 UniRef50_C8X332 Type III restriction protein res subunit n=1 Tax... 235 7e-60 UniRef50_C2E648 Helicase n=4 Tax=Lactobacillus RepID=C2E648_LACJO 235 8e-60 UniRef50_Q1QZA7 Type III restriction enzyme, res subunit n=5 Tax... 234 1e-59 UniRef50_B1XZH6 Type III restriction protein res subunit n=2 Tax... 234 2e-59 UniRef50_D1BPC6 Type III restriction protein res subunit n=2 Tax... 232 6e-59 UniRef50_C5NW00 DNA repair helicase Rad25 n=1 Tax=Gemella haemol... 232 7e-59 UniRef50_C6E151 Type III restriction protein res subunit n=3 Tax... 231 1e-58 UniRef50_B5IP85 Type III restriction enzyme, res subunit n=1 Tax... 231 1e-58 UniRef50_A5F3B5 Helicase-related protein n=24 Tax=Gammaproteobac... 230 2e-58 UniRef50_C8WYC9 Type III restriction protein res subunit n=2 Tax... 230 3e-58 UniRef50_C7GA84 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=C... 230 3e-58 UniRef50_Q1PKZ5 DNA repair helicase rad25 n=2 Tax=cellular organ... 229 5e-58 UniRef50_A0JTK4 Type III restriction enzyme, res subunit n=17 Ta... 229 5e-58 UniRef50_Q7UED5 Putative helicase n=2 Tax=Planctomycetaceae RepI... 228 1e-57 UniRef50_A5KTC5 Type I site-specific deoxyribonuclease n=2 Tax=c... 228 1e-57 UniRef50_A1SJ00 Type III restriction enzyme, res subunit n=3 Tax... 224 1e-56 UniRef50_C6I028 Putative helicase n=1 Tax=Leptospirillum ferrodi... 224 1e-56 UniRef50_D1N7I0 Helicase domain protein n=1 Tax=Victivallis vade... 224 2e-56 UniRef50_Q14JJ7 DNA/RNA helicase n=18 Tax=Francisella RepID=Q14J... 222 8e-56 UniRef50_A4SC93 Type III restriction enzyme, res subunit n=1 Tax... 220 2e-55 UniRef50_A9G978 Putative uncharacterized protein n=2 Tax=Myxococ... 219 4e-55 UniRef50_Q2NIB5 Predicted helicase n=2 Tax=Methanosphaera stadtm... 219 6e-55 UniRef50_C1XZ08 DNA/RNA helicase, superfamily II n=1 Tax=Meiothe... 217 2e-54 UniRef50_B4D2R4 Type III restriction protein res subunit n=1 Tax... 217 3e-54 UniRef50_B9CN59 DNA/RNA helicase n=1 Tax=Atopobium rimae ATCC 49... 215 1e-53 UniRef50_Q6F1F2 DNA repair DNA/RNA helicase n=3 Tax=Entomoplasma... 214 1e-53 UniRef50_Q4A127 Type-1 restriction enzyme R protein n=77 Tax=cel... 213 3e-53 UniRef50_Q8YK43 All8075 protein n=1 Tax=Nostoc sp. PCC 7120 RepI... 212 5e-53 UniRef50_B3RW31 Putative uncharacterized protein n=1 Tax=Trichop... 212 5e-53 UniRef50_D2LJT9 Type III restriction protein res subunit n=1 Tax... 212 9e-53 UniRef50_C3X5U1 Type I site-specific deoxyribonuclease n=1 Tax=O... 211 1e-52 UniRef50_Q2S3K0 HsdR n=1 Tax=Salinibacter ruber DSM 13855 RepID=... 208 7e-52 UniRef50_A4CPV8 Putative helicase n=1 Tax=Robiginitalea biformat... 208 9e-52 Sequences not found previously or not previously below threshold: UniRef50_C0QBN3 HsdR3 n=1 Tax=Desulfobacterium autotrophicum HRM... 250 2e-64 UniRef50_C5D556 Type III restriction protein res subunit n=2 Tax... 249 7e-64 UniRef50_C4YDS3 Putative uncharacterized protein n=1 Tax=Candida... 246 3e-63 UniRef50_B7GIH0 N-terminal HKD family nuclease fused to DNA/RNA ... 245 1e-62 UniRef50_C4ZJT0 Type III restriction protein res subunit n=5 Tax... 244 2e-62 UniRef50_A9NH67 Putative DNA/RNA helicase n=1 Tax=Acholeplasma l... 239 5e-61 UniRef50_B6AMU8 Putative helicase n=1 Tax=Leptospirillum sp. Gro... 239 6e-61 UniRef50_D1AKE3 Type III restriction protein res subunit n=1 Tax... 236 4e-60 UniRef50_UPI00019764F2 DNA or RNA helicase of superfamily II n=1... 235 9e-60 UniRef50_B8J8P5 Type III restriction protein res subunit n=2 Tax... 232 6e-59 UniRef50_A3CSN2 Type III restriction enzyme, res subunit n=1 Tax... 231 1e-58 UniRef50_A8PUJ3 Putative uncharacterized protein n=1 Tax=Malasse... 229 6e-58 UniRef50_Q1MTR1 Putative mitochondrial ATP-dependent helicase ir... 229 7e-58 UniRef50_Q1WTK7 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=L... 229 8e-58 UniRef50_C7NAB7 Type III restriction protein res subunit n=3 Tax... 228 8e-58 UniRef50_Q047C2 DNA or RNA helicase of superfamily II n=26 Tax=L... 228 1e-57 UniRef50_D2RKS9 Type III restriction protein res subunit n=2 Tax... 227 1e-57 UniRef50_C7NIT3 DNA/RNA helicase, superfamily II n=1 Tax=Kytococ... 227 3e-57 UniRef50_C4RRI3 Type III restriction enzyme subunit res n=2 Tax=... 226 4e-57 UniRef50_C6CS24 Type III restriction protein res subunit n=5 Tax... 224 2e-56 UniRef50_B1VE55 Putative helicase n=2 Tax=Corynebacterium RepID=... 224 2e-56 UniRef50_A4WYD6 Transposase, IS4 family n=3 Tax=Rhodobacteraceae... 222 9e-56 UniRef50_B3ECY7 Type III restriction protein res subunit n=1 Tax... 220 2e-55 UniRef50_Q8R5Z3 DNA/RNA helicase (DEAD/DEAH BOX family) n=15 Tax... 219 6e-55 UniRef50_Q82Z57 Helicase, putative n=6 Tax=Lactobacillales RepID... 218 8e-55 UniRef50_D1PBM5 Putative prophage LambdaSa03, helicase n=1 Tax=P... 217 2e-54 UniRef50_C4FCA5 Putative uncharacterized protein n=1 Tax=Collins... 217 3e-54 UniRef50_C1I4L0 Superfamily II DNA/RNA helicase n=6 Tax=Clostrid... 217 3e-54 UniRef50_C8WVJ5 Type III restriction protein res subunit n=4 Tax... 215 9e-54 UniRef50_UPI00016C5789 putative DEAD box family helicase, phage ... 214 1e-53 UniRef50_B4CXK7 Type III restriction protein res subunit n=1 Tax... 212 1e-52 UniRef50_A6VYC7 Type III restriction protein res subunit n=5 Tax... 211 2e-52 UniRef50_Q8YKY1 Alr7157 protein n=2 Tax=Nostocaceae RepID=Q8YKY1... 210 4e-52 UniRef50_A4J7S3 Type III restriction enzyme, res subunit n=1 Tax... 208 7e-52 UniRef50_B5JP68 Type III restriction enzyme, res subunit family ... 208 8e-52 >UniRef50_P08956 Type I restriction enzyme EcoKI R protein n=52 Tax=Gammaproteobacteria RepID=T1RK_ECOLI Length = 1170 Score = 1443 bits (3736), Expect = 0.0, Method: Composition-based stats. Identities = 1170/1170 (100%), Positives = 1170/1170 (100%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE 60 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE Sbjct: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE 60 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR Sbjct: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG Sbjct: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL Sbjct: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV Sbjct: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE Sbjct: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL Sbjct: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT Sbjct: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED 540 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED Sbjct: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED 540 Query: 541 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV Sbjct: 541 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 Query: 601 SAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 SAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN Sbjct: 601 SAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 Query: 661 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD 720 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD Sbjct: 661 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD 720 Query: 721 PTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITR 780 PTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITR Sbjct: 721 PTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITR 780 Query: 781 FNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK 840 FNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK Sbjct: 781 FNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK 840 Query: 841 IFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLV 900 IFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLV Sbjct: 841 IFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLV 900 Query: 901 AKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNK 960 AKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNK Sbjct: 901 AKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNK 960 Query: 961 LPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPN 1020 LPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPN Sbjct: 961 LPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPN 1020 Query: 1021 AQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRA 1080 AQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRA Sbjct: 1021 AQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRA 1080 Query: 1081 AVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRR 1140 AVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRR Sbjct: 1081 AVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRR 1140 Query: 1141 GGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 GGKAMLQRTFDDNLDTLLGKFSDYIWDELA Sbjct: 1141 GGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 >UniRef50_Q2P0A6 Type I restriction-modification system R subunit n=10 Tax=Proteobacteria RepID=Q2P0A6_XANOM Length = 1183 Score = 1058 bits (2735), Expect = 0.0, Method: Composition-based stats. Identities = 466/1179 (39%), Positives = 687/1179 (58%), Gaps = 39/1179 (3%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE--NQ 62 SNF FL+ + + +A AE + DPNTTLIK+R F EA A+ L I + Q Sbjct: 31 SNFSFLQEHDPVFFKLASMAEQVFASDPNTTLIKLRQFAEALAQDLAGRAGILHDQRTTQ 90 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 DL+ +L + +D I +FH LR GN+A H + +A L++ LAVWY+R Sbjct: 91 ADLIYQLARELRLDRRIQELFHVLRVEGNKATHGFTTQHREAMDGLKVARDLAVWYHRAF 150 Query: 123 TKDY-DFPVPVFVLPERGENLY---HQEVLTLKQQLE--QQVREKAQTQAEVEAQQQKLV 176 ++ DF FV P+ EV LK +L+ +Q +++Q AE+++ + KL Sbjct: 151 GRNAADFKAGAFVPPKDPAAPLRDVQAEVHRLKAELDTARQQHDQSQALAELKSSEAKLN 210 Query: 177 ALNGYIAILEGKQQETEA-QTQARLAALEAQLAEKNAELAK-QTEQERKAYHKEITDQAI 234 A +E + Q A Q + L L ++ A L + T ++ Q Sbjct: 211 AELAEAMDIEARAQSALAVQREQELHRLRQDFEQRIASLQQPDTARQAATQQVADATQQA 270 Query: 235 KRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 T +LSE+ +R LID QLR+AGW+ADS L +KG RPE G N AIAEWPT Sbjct: 271 SNTFDLSEDLTRILIDQQLREAGWEADSLDLTHAKGTRPEKGRNLAIAEWPTKVPRAN-- 328 Query: 295 GFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 ADYVLF GL P+AVVEAKR I++ R+ ++ RY++ F + Sbjct: 329 --ADYVLFAGLTPVAVVEAKRKQINIADRIPQAERYARDFAMRGELAPAYPATTA----- 381 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 W D G F++P ++ NGR + + +SGIW+RD+R N+ + L ++H Sbjct: 382 -----IAGWADGQGGH-FQVPLAFACNGRPFVKQLAEQSGIWFRDLRSPANLRRPLQKFH 435 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 PE++ ++L + + + A GM+ L LR YQ+ A++AVE A+ G + LLAMATG Sbjct: 436 TPEDIADLLTRDRDQAERDLAQE-GMAYLNLRDYQQRAIQAVEGALASGARNCLLAMATG 494 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDIKGL 533 TGKTRT I +++RL++++RF RILFLVDR +LG QA +D ++ + T I+++ GL Sbjct: 495 TGKTRTMIGLIYRLLKAERFHRILFLVDRSALGTQATETMQDMQLEQNQTLAQIYNLDGL 554 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 D D T++ VATVQ++V+R QSD+P P+ +DCIVVDEAHRGY LD+E T+GEL Sbjct: 555 DDTRTADETRVQVATVQAMVRRIFQSDDPPPIGTFDCIVVDEAHRGYTLDQEMTDGELAV 614 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPP 653 R Y+S YRR+LD+FDA +I LTATPA HT +IFG+P+Y Y+YR AV D +LID +PP Sbjct: 615 RDHAQYLSQYRRVLDYFDACRIGLTATPAKHTTEIFGKPIYTYSYREAVADDWLIDHEPP 674 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC 712 I+ T + G++ +GE+V I+ Q G+V LED+ DF + FNR ++ F+R VC Sbjct: 675 IRYTTALGKNGIHFDRGERVSVINTQTGDVDTADLEDELDFNIESFNRRVITANFDRVVC 734 Query: 713 NELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDA-IIKITGDADKDA 771 +L LDP G +KTL+FCV HA+ V +L AFK+ + + A + ITG +DK Sbjct: 735 EQLAIELDPDGEEKTLIFCVNQPHAERVKHQLDEAFKQVHGNYYNQASVAVITGKSDK-- 792 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 V +I + ER P I +TVDLLTTG+D+P I N+VF+R+VRSRILYEQMKGRATR C Sbjct: 793 --VDQLIRNYKNERFPTIAITVDLLTTGIDVPRIANLVFMRRVRSRILYEQMKGRATRRC 850 Query: 832 PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSF 891 ++ KT F+IFD VD+Y+ LE VDTMRP+V P + ++ LV+E+ +Y ++G S Sbjct: 851 DDIGKTVFRIFDPVDLYAALEDVDTMRPLVKDPNISIEQLVHELGQQRSYDAPGSNGGSH 910 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP 951 A+ + +QL ++ R++ A + R+E +L EL + A GV + L + G Sbjct: 911 ADDALDQLSQRIMRVLRKA---QHRAEQRPDLRDKLSEL-ETAWGVAPAVLHTHLHKLGA 966 Query: 952 HWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAF 1011 +A + P + +L + + + P+ + D ++ YG + P D+L++F Sbjct: 967 RNAASFLREHPRLVEQLADVGVLLGT-DRYPVISEHTDTLLERAQNYGVNEAPADYLDSF 1025 Query: 1012 DSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAA 1071 ++ ++ N AL ++NRPRDLTR L E++ D+ + E+ LR AW+++ +++AA Sbjct: 1026 NAFIREQINQSAALSVIVNRPRDLTRAQLREVRLLLDQHGYSEAHLRGAWRDSTQQEVAA 1085 Query: 1072 RLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDV 1131 +IG+IRRAA+G+AL PFE+RVD A+ I + W+ Q WL RLAQ L +VVLD D Sbjct: 1086 SIIGYIRRAALGEALVPFEQRVDKAMQGIYAQRSWTPVQRRWLKRLAQQLIHEVVLDRDT 1145 Query: 1132 FKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 + NF GG L R D LD +LG +++WD+ Sbjct: 1146 VQR-NFSGDGGALQLDRLLDGRLDQILGDLGEHLWDQTG 1183 >UniRef50_A4VH90 Type I restriction-modification system, R subunit n=2 Tax=Gammaproteobacteria RepID=A4VH90_PSEU5 Length = 1157 Score = 1055 bits (2727), Expect = 0.0, Method: Composition-based stats. Identities = 480/1187 (40%), Positives = 692/1187 (58%), Gaps = 47/1187 (3%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE 60 M SNF FL+ + +A AE + DPNTTLIK+R GEA A+ L I Sbjct: 1 MAVSSNFAFLQEHDPVFLQLANTAEQVFASDPNTTLIKLRQLGEALAQDLASRAGIEFDA 60 Query: 61 N-QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYY 119 Q DLL +L + +D NI S+FH LR GN+A HE+ +A L++ LA+WY+ Sbjct: 61 TTQSDLLYKLSREIQLDQNIRSLFHTLRVEGNRATHEFRTQHREAMDGLKVARALAIWYH 120 Query: 120 RLVTKD-YDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQ--KLV 176 + K+ + F FV P H LK Q+E+ + +++ E+E QQ +L Sbjct: 121 QSFGKNAHAFKPGPFVTPTDPSAPLHD----LKNQIERLKTQLSESSQELEDNQQLAELH 176 Query: 177 ALNGYIAILEGKQQETEAQTQARLAAL-EAQLAEKNAELAKQTEQER--------KAYHK 227 + +Q + E++ +LAA EA L + E ++ + + A Sbjct: 177 KREAEEYAVLAEQMDAESRGHKQLAAEHEAALHKLRTEHERRIKALQLQLLTQPQAAQQV 236 Query: 228 EITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTG 287 + +LSE+ +R LID QL AGW+ADS L +SKGARPE G NKAIAEWPT Sbjct: 237 MHRTMQATSSFDLSEDLTRILIDQQLIDAGWEADSLDLTYSKGARPEKGKNKAIAEWPT- 295 Query: 288 KDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHY 347 + + ADYVLF GL PIA+VEAKR I++ R+ ++ RY++ F+ + Sbjct: 296 ---SSPKACADYVLFAGLTPIAIVEAKRKRINIADRIPQAERYAREFNLSVEHQQP---- 348 Query: 348 SPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMS 407 + SW D G F++PF ++ NGR + + +SG W+RD+R N Sbjct: 349 ------SLLAGQTQSWSDGQGGH-FRVPFAFACNGRPFIKQLAEQSGTWFRDLRSPANTR 401 Query: 408 KALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEI 467 + L ++H+P++LL++L G + L LR YQE AV+ VE+A+ Q++ Sbjct: 402 RPLQDFHKPDDLLDLLKRSQTDAEAKLKAE-GFTYLKLRDYQEKAVQTVEQALANNQRDC 460 Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRIN-GDTFNS 526 LLAMATGTGKTRT I +M+R ++++RFKRILFLVDR +LG+QA+ +F DT + T Sbjct: 461 LLAMATGTGKTRTIIGLMYRFLKAERFKRILFLVDRSALGQQAIDSFNDTTLEQNHTLAQ 520 Query: 527 IFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQ 586 I+DIK L D E T++ VATVQ++V R +SD P PV +DCI+VDEAHRGY LD+E Sbjct: 521 IYDIKELGDMAAEAETRVQVATVQAMVSRIFRSDTPPPVGEFDCIIVDEAHRGYTLDQEM 580 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGF 646 TEGEL R Y+S YRR+LDHFDA +I LTATPA HT +IFG+PV+ Y+YR AV D + Sbjct: 581 TEGELAVRDHSQYLSQYRRVLDHFDACRIGLTATPAKHTSEIFGKPVFTYSYREAVADDW 640 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVADFNRGLVIP 705 L+D +PPI+ T+ +Q G+ KGE V I+ Q GEV LED+ F + FNR ++ P Sbjct: 641 LVDHEPPIRYETQLSQHGIRFEKGESVSVINTQTGEVDVAELEDELTFNIESFNRRVITP 700 Query: 706 AFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI-T 764 AF++ +C+EL LDP G +KT++FCV AHA+ V L AFK Y + ++A ++I T Sbjct: 701 AFDKVICDELAKELDPFGEEKTMIFCVNQAHAERVKNLLDEAFKTAYGEQYNEAAVRIIT 760 Query: 765 GDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMK 824 G +DK V+ +I R+ E PNI +TVDLLTTG+D+P ICN+VF+R+VRSRILYEQMK Sbjct: 761 GQSDK----VEQLIRRYKNEPNPNIAITVDLLTTGIDVPKICNLVFMRRVRSRILYEQMK 816 Query: 825 GRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKIT 884 GRATR C ++ KT F+I+D VD+Y++LE+VDTM+P+V P + L+ LV+E+ ++ Sbjct: 817 GRATRRCDDIGKTVFRIYDPVDLYASLEAVDTMKPLVKNPNISLEQLVSELASGASHDAP 876 Query: 885 E-ADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFA 943 D S A +QL ++ RI+ A + ++E ++LDEL QDA GV Sbjct: 877 GSQDDSSHAHDVLDQLSQRVMRILRKA---QHKAENKPSLKQKLDEL-QDAWGVEPAKLH 932 Query: 944 SRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDT 1003 + L E GP +A + I +L + + + + P+ DE++ + YG Sbjct: 933 THLHELGPQQAANFVRQHSQLINQLAAVSALLGS-ENYPLISTHSDELMVREQNYGQNQK 991 Query: 1004 PQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKE 1063 P D+LE+F + + N AL V+NRP+DLTR+ L E++ D+ F E+SL+ AW+ Sbjct: 992 PADYLESFHEFIHKQLNQSAALGVVVNRPKDLTREQLREVRLLLDQHGFSEASLKSAWRN 1051 Query: 1064 TRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKE 1123 N++IAA +IG+IR+AA+G+AL PF++RV A+ +I W+ Q WL+RLA+ L Sbjct: 1052 QTNQEIAASIIGYIRQAAIGEALLPFDQRVAQAMQKIYALQPWTPVQRKWLERLAKQLVH 1111 Query: 1124 KVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 +VV+D F GG L R NLD +L +D +W Sbjct: 1112 EVVIDPQQVNDA-FRNDGGLKALDRNLGGNLDRVLEALNDNLWSAAG 1157 >UniRef50_C3MF99 Putative restriction endonuclease type I with R subunit / type III with Res subunit n=1 Tax=Rhizobium sp. NGR234 RepID=C3MF99_RHISN Length = 1140 Score = 1044 bits (2700), Expect = 0.0, Method: Composition-based stats. Identities = 443/1180 (37%), Positives = 650/1180 (55%), Gaps = 67/1180 (5%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPP---CE 60 NF+ LK ++ + AE + DD NT+LIK R FGE K + L + E Sbjct: 6 SVNFDHLKSLSPELQRLGTLAERFFADDANTSLIKSRQFGEYMVKEIAALSGVYDPAARE 65 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 HDLLR L + + +FH +R+ GN+A H +A L+ L VWY R Sbjct: 66 TTHDLLRRLATQQILPREVADIFHAVRKSGNEATHNLAGSPTEALAALKFCRALGVWYRR 125 Query: 121 LVTKDYDFPVPVFVLPERGENL---YHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 +D +F FV P+ ++ E+ TL++Q+ + + A + + K A Sbjct: 126 TYGRDPNFRPGPFVPPKASADIDQATQAELATLRRQVREAEAQLAAAHSSADEL-AKARA 184 Query: 178 LNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQ--AIK 235 +A QT + A +A+L+ K AEL K + + + E Sbjct: 185 AADELARQAAADNAVWEQTAVEMEANQAELSRKLAELQKAAQAQPQQLQMEFKQAGLQAA 244 Query: 236 RTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG 295 L L E ++R LIDAQL AGW+ADS L + GARPE G N AIAEWP G Sbjct: 245 SRLELDERQTRRLIDAQLVDAGWEADSDRLSYQLGARPEEGRNLAIAEWPAAG------G 298 Query: 296 FADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADY LF+GL + ++EAKR ++DVP+ L ++ RY++ Sbjct: 299 RADYGLFIGLTCVGIIEAKRESVDVPSTLQQAERYARTI-----------------ALPP 341 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 + + F++PF ++TNGR + +TKSGIW+ D+R N + L W Sbjct: 342 ENSHPGGLWNHGLADPFRVPFVFTTNGRPFVRQWQTKSGIWFCDLRRDTNHPRPLTTWFS 401 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 P++LL++L ++ Q A++ + +R YQEDA+ A+E A+V GQ++IL++MATGT Sbjct: 402 PKDLLDILATDLDAAAQGLAEDS-FGKGRMRPYQEDAIAAIENAVVAGQRDILVSMATGT 460 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDIKGLT 534 GKTRT+IA+M+RL++ +RF+RILFLVDR++LG+Q A E T I G F I+ + GL Sbjct: 461 GKTRTSIALMYRLLKHKRFRRILFLVDRKALGKQTSDALETTEIEGMLNFAQIYKVAGLE 520 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDEPM---PVARYDCIVVDEAHRGYILDKEQTEGEL 591 K PED ++ VATVQSL+ R L +P +DCI+VDEAHRGY LD E E ++ Sbjct: 521 KKVPEDEDQVQVATVQSLIARILNEPDPAKRPTPGTFDCIIVDEAHRGYTLDAELRESDV 580 Query: 592 QFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQD 651 FR+ DY SAYR+ILD+FDAVK+ALTATPALHT +IFG PV+ Y YR AV++G+L D Sbjct: 581 GFRNLDDYQSAYRQILDYFDAVKVALTATPALHTREIFGHPVFHYGYRQAVVEGYLNDHL 640 Query: 652 PPIQIITRNAQEGVYLSKGEQVERISP---QGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 PP +I T ++ G++ GE+VE I Q ++ E D++VADFN+ + AFN Sbjct: 641 PPKRITTALSEAGIHFEGGEEVEIIDRTTGQIDLFELPDEVSLDYDVADFNKRVYSEAFN 700 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ--LEHDAIIKITGD 766 R VC + + P+ KTL+F +AHAD +V L +++Y + H ++KITG+ Sbjct: 701 RMVCRAIATEIPPSKPGKTLIFAARDAHADDLVRLLVEELQEEYGNDAVPHGMVMKITGN 760 Query: 767 ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 DK +I +F + P VVTVDLLTTG+D+P+ICN+VF+R+V+SRILY+QM GR Sbjct: 761 VDK----ADDLILKFKNDPHPKYVVTVDLLTTGIDVPTICNLVFVRRVKSRILYDQMIGR 816 Query: 827 ATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEA 886 ATRLCPE+ K F+IFD VD+Y+ L+ + MRPVVV+P + L LV ++ +ET E Sbjct: 817 ATRLCPEIGKEHFRIFDAVDLYAELQEMTDMRPVVVKPDISLGQLVTDLDKAET----EE 872 Query: 887 DGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRL 946 D A ++ A R+ + +R G RL Sbjct: 873 DKSWVAGQVIVRMRAMANRMDAETRESFERHT-----------------GETPENAVQRL 915 Query: 947 REKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQD 1006 + P I LE+ + ND + +DE++ ++ ++G TP+D Sbjct: 916 ATLSGSELQDWLKSHPRVIELLERRPIRTGSGNDGVVISTHEDELLRIEEIFGKNTTPED 975 Query: 1007 FLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRN 1066 ++ F+ ++ + N PAL AV RPRDLTRK L EL D +++ E+ LR A+ + RN Sbjct: 976 YITGFERFIRENMNQVPALIAVTQRPRDLTRKELSELAGLLDEKNYSEAMLRAAYGKVRN 1035 Query: 1067 EDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVV 1126 DIAA +IG +R+AA+GD L P+ RV++A+ +I+ W+ +Q WL R+ +ALK+K V Sbjct: 1036 ADIAAHIIGFVRQAAIGDPLIPYATRVENAIGKIEASRPWTQKQKEWLRRIGRALKDKPV 1095 Query: 1127 LDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 D + G F +GG + + FD LD +L F++ IW Sbjct: 1096 ADPTLLDQGVFADKGGFKRISQEFDGELDDVLHAFNEAIW 1135 >UniRef50_B5W466 Type III restriction protein res subunit n=2 Tax=Bacteria RepID=B5W466_SPIMA Length = 1128 Score = 1039 bits (2686), Expect = 0.0, Method: Composition-based stats. Identities = 458/1182 (38%), Positives = 665/1182 (56%), Gaps = 71/1182 (6%) Query: 3 NKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLN--IPPCE 60 +NFEFL+ + + AE + DDP T LIK+R F E A+ + E Sbjct: 4 ESANFEFLRSHDLQLVRLGALAERYFRDDPGTCLIKLRQFAEVLAQLTAAKTGQFVSTEE 63 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 Q DLL+ L + + +FH++R GN+A HEY D A L++ +LA+W++R Sbjct: 64 AQADLLKRLKFQRVISPEVADLFHQIRIAGNRATHEYIGDHRSALTMLKMARQLAIWFHR 123 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQ---EVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 + + F FV P ++ + E+ L+ LE+ E + + E Q + +++ Sbjct: 124 TFSGNTSFRAGAFVPPPNPTDVTAELAAELERLRIALEETRSEAERARLAAEEQARAVLS 183 Query: 178 LNGYIAILEGKQQETEA---QTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAI 234 + E +++ +ALE QLA A +KQ ++ A + D+A Sbjct: 184 AEEKARQEAENRSLWEQLAVESEQARSALEVQLATLQAA-SKQLPAQQTAAIISLADRAA 242 Query: 235 KRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 ++L E+E+R +ID QL+ AGW AD++ LR KG RP G N AIAEWPT Sbjct: 243 T-VIDLDEDETRAIIDQQLQDAGWLADTQNLRHDKGVRPVKGKNMAIAEWPTA------N 295 Query: 295 GFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 G ADY LFVG I +EAKR +V A ++++ RY++ F G + Sbjct: 296 GIADYALFVGTSCIGFIEAKRRRKNVSAAIDQAERYARGFQAGDGFAPI----------- 344 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 D S F+ PF ++TNGR Y ++T+SGIW+RDVR N +AL W+ Sbjct: 345 ----------DGSPWGEFQFPFVFATNGRPYLKQIETESGIWFRDVRQPTNRRRALVGWY 394 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 PE L +LG + + + P LR YQ+ A+ AVE A+ ++E+L+AMATG Sbjct: 395 TPEGLAALLGMDRETAHAHLKTQPYRFGFPLRPYQQRAIAAVEMALESDRREMLVAMATG 454 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI-NGDTFNSIFDIKGL 533 TGKT+ AIA+++RL+ ++RF+R+ F+VDR +LG QA G F T++ F IF ++GL Sbjct: 455 TGKTKLAIALLYRLLTAKRFRRVCFVVDRSALGSQAAGEFRTTKVVTAKAFGDIFGLQGL 514 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEPM---PVARYDCIVVDEAHRGYILDKEQTEGE 590 D PE TK+H+ T+Q LVKR L + EP P+ +YD +++DE HRGY+LD+E ++ E Sbjct: 515 EDITPESETKVHICTIQGLVKRVLYASEPRTVPPIDQYDLLLIDECHRGYLLDREMSDAE 574 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQ 650 L FRSQ DY+S YRR+L+HFDAVKI LTATPALHTVQIFGEPV+ Y YR AVIDGFLID Sbjct: 575 LSFRSQDDYISKYRRVLEHFDAVKIGLTATPALHTVQIFGEPVFTYAYREAVIDGFLIDH 634 Query: 651 DPPIQIITRNAQEGVYLSKGEQVERI-SPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 +PP+QI T ++ G+ GE ++ I SP G + DD +FEV +FN+ ++ FN+ Sbjct: 635 EPPVQITTTLSRSGIQFRAGEALDAIYSPTGHLQRIYAPDDLNFEVEEFNKKVITIPFNK 694 Query: 710 AVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADK 769 AV EL ++DP KTL+F V +AHAD+VV++++ A Y ++E A+ KITG DK Sbjct: 695 AVAKELAKHIDPNLPGKTLIFAVNDAHADIVVDQVKQAMADYYGEIEDAAVRKITGSVDK 754 Query: 770 DARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 V +I + + +P I VTVDLLTTG+D+P I N+VFLR+V SRILYEQM GRATR Sbjct: 755 ----VGDLIRSYRNDAMPQIAVTVDLLTTGIDVPKITNLVFLRRVNSRILYEQMLGRATR 810 Query: 830 LCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGR 889 CPE++K +F+IFD VD+Y+ L+++ M+PVVV P + L+ L +E ++TEAD R Sbjct: 811 QCPEIDKETFRIFDAVDLYAKLQTLTEMKPVVVNPAISLEQLFDEFA-----QVTEADHR 865 Query: 890 SFAEHSHEQLVAKLQRIIG-LATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLRE 948 + +Q++ KL+R +G LA RDR E G R R Sbjct: 866 AVI---RDQILVKLRRKLGRLADQARDRYEA--------------DIGETPEETLERFRT 908 Query: 949 KGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFL 1008 A + PG L+ DEVV+V YG P DFL Sbjct: 909 SPLPELAGWVSDRPGIGRILD--WNPEGGEGSLLPISHHPDEVVAVTRGYGSGQKPDDFL 966 Query: 1009 EAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNED 1068 ++F + V+ + N AL V+ RPR+LTR L EL+ D+ + E++LR+AW+E +NED Sbjct: 967 DSFTAYVRDNVNQLAALTVVLQRPRELTRAQLRELRLELDKMGYSETNLRQAWQEAKNED 1026 Query: 1069 IAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLD 1128 IAA +I IR+AA+GD L P++ERV A+ RI + W+ Q WL R+ + + + ++D Sbjct: 1027 IAASIIDFIRQAALGDPLIPYDERVKAAMKRILAKRAWTDPQRKWLKRIGEQVAREFIVD 1086 Query: 1129 DDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 F GG L R F+ L+ +LG ++ +W A Sbjct: 1087 RAALDQEPFGNDGGFNRLNRIFEGQLEAILGDINEELWRRTA 1128 >UniRef50_B2J091 Type III restriction enzyme, res subunit n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J091_NOSP7 Length = 1105 Score = 1034 bits (2672), Expect = 0.0, Method: Composition-based stats. Identities = 455/1177 (38%), Positives = 653/1177 (55%), Gaps = 85/1177 (7%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPC- 59 M NF FL + + AE + DDPNT LIK+R FGE A+ + + Sbjct: 1 MPESLNFSFLAVHDQQLVRLGALAERYFADDPNTCLIKLRQFGELLAQLAAANIGLYEVA 60 Query: 60 -ENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 E Q DLL L + + +FH+LR+IGNQA HE + A L+ L +W+ Sbjct: 61 DERQIDLLNRLRDRGLIKGEVDRLFHELRKIGNQATHELSGNHRTALSGLKYALALGIWF 120 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 +R +F F+ P + E TLK +L + E + E + Q+ + Sbjct: 121 HRAFGGGCNFDPGAFIPPPDPKI----ETETLKAELARLRDEAQRHLVIAETEAQRRTS- 175 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL 238 E QE +A+ Q L L E A+ Q++ + + Q + + Sbjct: 176 ------AEDLAQEAQAKVQEVL----QHLVEIQAQAQNQSQHSIQQTITQA--QVAESGV 223 Query: 239 NLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 L E E+R LID QLR AGW+ADS+ L + RP+ G N AIAE+PT G AD Sbjct: 224 RLDERETRRLIDIQLRAAGWEADSEELTYQNSIRPQKGRNLAIAEYPTA------NGRAD 277 Query: 299 YVLFVGLKPIAVVEAKRNNIDVPAR-LNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 Y LF GL+ + VVEAKR + DV LN++ RYS+ F Sbjct: 278 YALFCGLQIVGVVEAKRQSKDVSEGALNQAKRYSEGFQ---------------------- 315 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 Q +K+PF ++TN R Y ++TKSGIW+ D+R N+ L WH P+ Sbjct: 316 VLGEELLAGGPWQNYKVPFVFATNARPYLQQLQTKSGIWFCDLRRPTNLRVCLATWHSPQ 375 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 LL+ L + + N L LR YQ A++AVE A+ + Q+ +LLAMATGTGK Sbjct: 376 GLLDALAQDIDQANTRLTQEGFNYGLELRDYQIRAIQAVESALAREQRILLLAMATGTGK 435 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI-NGDTFNSIFDIKGLTDK 536 T+T IA+++RL++++RF+RILFLVDR +LGEQ AF+D+R+ N +F IF+IK L + Sbjct: 436 TKTCIALVYRLLKTKRFRRILFLVDRTALGEQTSNAFKDSRMENLQSFADIFEIKDLKEI 495 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEP---MPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 + TK+H+ATVQ +VKR L + + +YDCIVVDE HRGY+LD+E ++ EL+F Sbjct: 496 ELDRDTKVHIATVQGMVKRVLYPSDSASVITPDQYDCIVVDECHRGYLLDRELSDRELEF 555 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPP 653 R DYVS YRR+L+HFDAVKI LTATPALHT QIFGEPVY Y+YR AVIDG+LID + P Sbjct: 556 RDFNDYVSKYRRVLEHFDAVKIGLTATPALHTTQIFGEPVYIYSYREAVIDGWLIDHEVP 615 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC 712 +I T+ ++EG+ + GEQ+E +PQ G++ D+ EV FNR ++ FNR VC Sbjct: 616 FKIRTKLSEEGMVWNPGEQMEFFNPQTGQLDLVHAPDEVKIEVEQFNRKVITEDFNRVVC 675 Query: 713 NELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDAR 772 L ++DP+ +KTL+FC T+ HAD+VV +L+ AF+ Y +E DAI+KIT +ADK Sbjct: 676 EALAQHIDPSLPEKTLIFCATDGHADIVVNQLKQAFQSIYGSVEDDAIVKITRNADKPL- 734 Query: 773 KVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 +I +F E P + VTVDLLTTG+DIP+ICN+VF+R+V SRILYEQM GRATRLC Sbjct: 735 ---ELIRKFRNEVNPKVAVTVDLLTTGIDIPAICNLVFIRRVNSRILYEQMLGRATRLCN 791 Query: 833 EVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFA 892 E+NK F+IFD V +Y + V +M+PVVV P + LV E+ Sbjct: 792 EINKEVFRIFDAVRLYEAIAPVSSMKPVVVNPNISFTQLVEELE--------TVKNPDAL 843 Query: 893 EHSHEQLVAKLQRII-GLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP 951 E QL+ K+QR L+ N+++ E I AG+ + S L++ P Sbjct: 844 ETVINQLLVKIQRKRRHLSPNNQEQLEAI--------------AGMPLSNMVSHLKQSTP 889 Query: 952 HWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAF 1011 E + + + ++ + + DE+V ++ YG+ + P+D+L++F Sbjct: 890 QQVREWWEQRKA----IAQILDLRDGGTVPMLISRHADELVGIERGYGNAERPEDYLDSF 945 Query: 1012 DSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAA 1071 + + + N PAL V RPR+LTR L EL+ + E +L+ AW+E NEDIAA Sbjct: 946 RAFLLENMNKIPALIVVTQRPRELTRAQLKELRIGLYTAGYTEINLKTAWREITNEDIAA 1005 Query: 1072 RLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDV 1131 +IG IR+A +GDAL P+ ERVD A+ +I W+ Q WL+R+ + +K + ++D + Sbjct: 1006 SIIGFIRQATLGDALIPYTERVDRAMKKILASQLWTPPQRKWLERIGKQMKAETIVDREA 1065 Query: 1132 FKTGNFHRR-GGKAMLQRTFDDNLDTLLGKFSDYIWD 1167 G F + GG L + FD +L+ ++ + IWD Sbjct: 1066 LDKGEFKTQGGGFERLNKVFDGDLENIVIQIHKNIWD 1102 >UniRef50_Q210K0 Type III restriction enzyme, res subunit n=4 Tax=Bacteria RepID=Q210K0_RHOPB Length = 1126 Score = 1022 bits (2643), Expect = 0.0, Method: Composition-based stats. Identities = 447/1185 (37%), Positives = 648/1185 (54%), Gaps = 74/1185 (6%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP--P 58 M + +NF FL + + AE+ + DDP T++ K+R F E +K + Sbjct: 1 MRSSANFGFLGDHDVRLAQLGALAESYFRDDPTTSIFKLRQFAELMSKLIAARHAAYRDE 60 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 E+ + LR L + VFH LR+ GN+A H+ +DA L+L +L +W+ Sbjct: 61 RESFEETLRRLSFERIIPKEAADVFHALRKSGNRAAHDIAGTQSDALTALKLARQLGIWF 120 Query: 119 YRLVTKDYDFPVPVFVLPERGENLY---HQEVLTLKQQLEQQVREKAQTQAEVEAQQQKL 175 +R K D FV P + +E+ L ++L + A Q E E + Sbjct: 121 HRTYGKQPDIAFGAFVPPPEPIDATVALREEIAALGRRLTESEDAAAGAQREAEEHARAR 180 Query: 176 VALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQA-- 233 L +A E +++ + + +A++A + A L E A ++ +A Sbjct: 181 ETLEQRLAR-EAEERAIWEKLAQDIENEKAEIAARLAALQAVAEHTPAADILQLVQRAEV 239 Query: 234 IKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGN 293 ++L E +R LID QLR AGW AD+K LR+S+G RP G N AIAEWPT + Sbjct: 240 ASSKIDLDEATTRALIDQQLRDAGWDADTKALRYSEGVRPSKGRNLAIAEWPT------S 293 Query: 294 QGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 G ADY LF+GL + VVEAKR +V A ++++ RYS Sbjct: 294 SGPADYALFIGLTLVGVVEAKRKRKNVSAAIDQAERYSVGL----------------AAR 337 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEW 413 W D K+PF ++ NGR Y ++T+SGIW+RD R N +AL W Sbjct: 338 ADFTFAGGPWTDH------KVPFVFAANGRSYLKQLETESGIWFRDTRRAANHRRALVSW 391 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 P L +L + P LR YQ+ A+ A+EK + ++ +LLAMAT Sbjct: 392 LTPSGLSGLLEVDQDAATDALKTLPFDFGFPLRDYQQAAITAIEKGLEAERRSMLLAMAT 451 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI-NGDTFNSIFDIKG 532 GTGKT+ AIAM++RL+ ++RF+R+ F+VDR +LG QA G F T+I +G F IF +K Sbjct: 452 GTGKTKLAIAMLYRLLTTKRFRRVCFVVDRSALGIQAAGEFTTTKIVSGKAFADIFGLKK 511 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTL---QSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 L D PE TK+H+ T+Q LVKR L + E PV +YD IV+DE HRGY+LD+E ++ Sbjct: 512 LEDVTPETETKVHICTIQGLVKRVLYAADTSEAPPVDQYDLIVIDECHRGYLLDREMSDA 571 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLID 649 EL FR Q DY+S YRR+L++FDAVKI LTATPALHT +IFGEP+++Y+YR AVI+G LID Sbjct: 572 ELSFRGQDDYISKYRRVLEYFDAVKIGLTATPALHTTEIFGEPIFKYSYRDAVIEGHLID 631 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVADFNRGLVIPAFN 708 +PP++I T A+ G+ K EQ+E ++ + GEV D+ FEV FN+ +V P FN Sbjct: 632 HEPPVRIETALARAGIVFEKDEQLELLNTRTGEVDLAHAPDEIRFEVEQFNKQVVTPDFN 691 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDAD 768 RAV EL ++DP KTL+F T+AHAD+VV +++ AF Y +++ A+ KITG D Sbjct: 692 RAVAEELAKHIDPALPGKTLIFAATDAHADIVVAKIKDAFAAAYGEIDDAAVKKITGSVD 751 Query: 769 KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 + VQ +I F E P IVVTVDLLTTG+D+PSI N+VFLR+V SRILYEQM GRAT Sbjct: 752 R----VQKLIRSFRNEANPKIVVTVDLLTTGIDVPSITNLVFLRRVNSRILYEQMIGRAT 807 Query: 829 RLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADG 888 R CP++ K F+IFD VD+Y L+++ M+PVVV P + + LV E+ EA+ Sbjct: 808 RQCPDIGKEVFRIFDAVDLYPHLQNLTDMKPVVVNPSISFEQLVKEL--------VEAEQ 859 Query: 889 RSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLRE 948 + E +Q KL+R + K + AAG RL E Sbjct: 860 HAHRESIRDQFAVKLRRRLK-------------KLPEEARARFEAAAGETPEQTLKRLLE 906 Query: 949 KGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDID---DEVVSVKSLYGDYDTPQ 1005 GP A+ + L D + D P F+ I D+VV+V YG+ P+ Sbjct: 907 NGPTEFAKWLSSHSAIGPIL-----DWQSDGDTPRFMPISHHPDQVVAVTRGYGEASKPE 961 Query: 1006 DFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETR 1065 DFL+ F + V+ + N AL+ V+ RPRDLTR GL +L+ D + F E++LR+AW + + Sbjct: 962 DFLDGFSAFVRDNVNTIAALKLVVQRPRDLTRAGLQDLRRALDLKGFSEANLRRAWADAK 1021 Query: 1066 NEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKV 1125 N+DIAA +IG +R+AA+GD L P+ +RV A+ ++ W+ Q WL R+ + + +++ Sbjct: 1022 NQDIAASIIGFVRQAALGDPLTPYGDRVRVAMQKVMASRAWTEPQKRWLTRIGEQITKEI 1081 Query: 1126 VLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 V+D F GG L + F L+ +L ++ +W + Sbjct: 1082 VVDRSTIDREPFIADGGFTRLNKVFGGELEAVLAGINEEMWKKTG 1126 >UniRef50_Q7UK96 Type I restriction enzyme EcoKI R protein n=3 Tax=Bacteria RepID=Q7UK96_RHOBA Length = 1138 Score = 1017 bits (2629), Expect = 0.0, Method: Composition-based stats. Identities = 455/1186 (38%), Positives = 652/1186 (54%), Gaps = 83/1186 (6%) Query: 3 NKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNI--PPCE 60 + NF FL+G A A AE DDPNT L+K+R E A+ + L I E Sbjct: 10 HPGNFWFLEGYQPVLLAHALRAERYVFDDPNTALVKLRQLAEFFAREVAAELGIATGSQE 69 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 + ++ R L ++ + V +R+ GN A H + DA CL+L +LA+W+++ Sbjct: 70 DFVNVERRLRDSGILNQQLRDVMRTVRQKGNSAAHSLAGERRDALHCLKLVRQLAIWFHK 129 Query: 121 LVTKDYDFPVPVFVLPERG---ENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 V +F FV P + +E+ L++ +E+Q E +AE E + + Sbjct: 130 TVRGANNFHAGPFVPPADPAQGDEQLSEELARLRETVEKQQAELDAAKAESEKLGEVVRD 189 Query: 178 LNGYIAILEGKQQ-------ETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEIT 230 + +G +Q ETE Q R+ E L+E A+ A+Q+ + R+ + Sbjct: 190 RQSAYELAKGNEQAAMELAAETEETLQQRIEDYERLLSETAAKNAEQSAEAREDIIE--A 247 Query: 231 DQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDE 290 Q + ++L E ++R LID QLR AGW+AD+ LR++ G RP+ G N AIAE PT Sbjct: 248 SQKAAQEISLDEFDTRKLIDQQLRDAGWEADTSELRYANGIRPQKGRNMAIAEVPT---- 303 Query: 291 TGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPD 350 + G ADYVLF GL PIA VEAKR + + +++++RYSK F Sbjct: 304 --DDGIADYVLFTGLTPIATVEAKRKRRNARSAIDQAHRYSKSF---------------- 345 Query: 351 EVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKAL 410 Q + +PF +STNG + + +SGIW+RDVR N +AL Sbjct: 346 ------RMSSDYVQPGGPWGEYSVPFVFSTNGTPFHRQLIDQSGIWFRDVRVETNHPRAL 399 Query: 411 PEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 W+ PE L ++L + N P L LRYYQ DA+ AVEKAI K Q EILLA Sbjct: 400 TGWYTPEGLQDLLKLDIPAANAKLETEPR-DYLPLRYYQRDAIEAVEKAIAKDQTEILLA 458 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFD 529 MATGTGKTRTAI +++RLI++ RF RILF+VDRRSLGEQA AF+D ++ + +F I+D Sbjct: 459 MATGTGKTRTAICLLYRLIKASRFNRILFVVDRRSLGEQAFDAFKDVKLEQNQSFPEIYD 518 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSD---EPMPVARYDCIVVDEAHRGYILDKEQ 586 +K L D P+ TK+H+ T+QS+VKR + D EP PV +YDCIV+DE HRGY LD++ Sbjct: 519 VKELGDVKPDRETKLHLCTIQSMVKRVVDQDSNSEPYPVDQYDCIVIDECHRGYTLDRDM 578 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGF 646 +E EL +R QLDYVS YRR+LDHFDAV+I LTATPALHT +IFG PVY+Y+YR AVID Sbjct: 579 SEEELGYRDQLDYVSKYRRVLDHFDAVRIGLTATPALHTTEIFGSPVYQYSYRQAVIDNN 638 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGE-VINDTLEDDQDFEVADFNRGLVIP 705 L+D +PP I+T ++ G++ GE V+ + + ++T D+ D E+ FNR + Sbjct: 639 LVDHEPPFIILTELSESGMHWDAGETVKYFDTVTKSIADETTPDEIDIEIDGFNRLAITE 698 Query: 706 AFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITG 765 +FN+ VC+ L +D T KTL+FCV + HADMVV L AA ++++ HD + KITG Sbjct: 699 SFNQVVCDVLAQQIDHTQPGKTLIFCVRDTHADMVVRLLTAAIEQRHGPQPHDTVKKITG 758 Query: 766 DADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 D ++ + I RF E +P VVTVDLLTTG+D+P I N+VFLR+ +SRIL++QM G Sbjct: 759 DIERTSE----AIRRFKNEPIPKYVVTVDLLTTGIDVPEITNVVFLRRTKSRILFDQMIG 814 Query: 826 RATRLCPEV-----NKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSET 880 RATRLC ++ +K F I+D V +Y L+ M+PVV +P + LV S Sbjct: 815 RATRLCKDLFFDGEDKEYFHIYDAVGVYEALQDHTDMKPVVAKPFTMFKKLVELFQSSSD 874 Query: 881 YKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFN 940 +QLVAKL+R ++ +I+K EL AG Sbjct: 875 PDA--------HADIRQQLVAKLRR----------KTPSINKNWLDTFELL---AGDTPE 913 Query: 941 GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD 1000 + + I L++ K D + I + D +V ++ YG Sbjct: 914 AISDLWASSSDAELQQWLTDHASLITELDQRKAD-----GSIIISEHADALVGIERGYGG 968 Query: 1001 YDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKA 1060 P+D+LE+F + PAL V RPRDLTRK L ELQ ++ F E++++ A Sbjct: 969 NQKPEDYLESFRQFLVEHKTDIPALILVTTRPRDLTRKDLKELQLQLEQHGFNETAIKSA 1028 Query: 1061 WKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQA 1120 K+T N+DIAA ++G +R A + + L P+EERVD A+ I W +Q WL+R+ + Sbjct: 1029 VKDTTNQDIAASILGFVRHAMLNEPLLPYEERVDEAMRSILTSQKWQPQQRKWLERIGKQ 1088 Query: 1121 LKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 +KE VV+D D+F+ G F GG + + FD L+ ++ IW Sbjct: 1089 IKENVVIDRDLFEVGAFQDHGGFVKIDKVFDGRLNEVMQSIITSIW 1134 >UniRef50_C4KDM8 Type III restriction protein res subunit n=4 Tax=Proteobacteria RepID=C4KDM8_THASP Length = 1137 Score = 1014 bits (2621), Expect = 0.0, Method: Composition-based stats. Identities = 459/1181 (38%), Positives = 636/1181 (53%), Gaps = 76/1181 (6%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP--PCEN 61 SNF LK + + AE + DDPNT L+K+R E A+ + I P E Sbjct: 6 PSNFGHLKVHDQQLVRLGMLAERYFSDDPNTCLLKLRQLTELLAQLAASKVGIYTSPDEK 65 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRL 121 Q DLLR L V + ++F ++R+ GN A H D A + LRL ++L VW++R Sbjct: 66 QVDLLRRLQDKGIVPREVGALFAEVRKAGNDANHCLSGDHRTALLGLRLSWQLGVWFHRT 125 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 KD F F P N E LK +L+ E +Q +A + Q L + Sbjct: 126 F-KDPAFKSGPFQPPAPPAN----ESAELKTELDALRAELSQYRAAQKDAAQALDQIQVQ 180 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR-TLNL 240 I E E AA L A+ + K + + + Sbjct: 181 IRQAEDDSAVWETMAAEAEAAKAELLQRLEVLQAQAAAAPPQVIAKFVAAADSAAAVIQI 240 Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 SE ++R LID QL AGW DS + F++G RP+ G N AIAEWPT G ADY Sbjct: 241 SEGDTRRLIDQQLALAGWTVDSARITFARGIRPQRGQNLAIAEWPT------ETGPADYA 294 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LF+ L P+A+VEAKR NIDV A L ++ RYS+ F PE E Sbjct: 295 LFIDLMPVAIVEAKRKNIDVSAALQQAKRYSRGF-------------------RVSPEVE 335 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 + F++PF +S+NGR Y + +SG+W+ D+R N+ AL W+ PE L Sbjct: 336 LPLSNFGANAEFRVPFVFSSNGRPYLRQLAERSGVWFCDLRRPANLGHALDGWYTPEGLN 395 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 +L + + + A+ P LR YQ+ A+ A E +I GQ+ ILLAMATGTGKT+T Sbjct: 396 ALLQRDDDRAHTELANAPFDFGFPLRPYQQRAILATEASIRDGQRAILLAMATGTGKTKT 455 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRIN-GDTFNSIFDIKGLTDKFPE 539 IA+++RL++++RF+RILFLVDR +LGEQA AF+DTR+ TF IF IK L + P+ Sbjct: 456 CIALIYRLLKAKRFRRILFLVDRSALGEQAANAFKDTRMERLQTFADIFGIKELEVQAPD 515 Query: 540 DSTKIHVATVQSLVKRTLQSDE---PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 D T +H+ATVQ +V+R L + P P+ +YDCI+VDE HRGY+LD+E ++ EL FR Sbjct: 516 DDTAVHLATVQGMVQRVLYPSDGTPPPPIDQYDCIIVDECHRGYLLDRELSDTELSFRGY 575 Query: 597 LDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQI 656 DYVS YRR+LD+FDAVK+ LTATPALHT QIFG PV+ Y YR AV+DG+L+D +PPIQ+ Sbjct: 576 DDYVSKYRRVLDYFDAVKVGLTATPALHTTQIFGTPVFAYGYREAVVDGYLVDYEPPIQV 635 Query: 657 ITRNAQEGVYLSKGEQVERISPQGEVIN-DTLEDDQDFEVADFNRGLVIPAFNRAVCNEL 715 T + +G+ GE+V+ + + I D+ +V DFNR ++ FN VC L Sbjct: 636 HTLLSGQGIAWKAGEEVKVYNTARQQIELFKTPDEIKLKVDDFNRKVITRPFNEVVCTYL 695 Query: 716 TNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQ 775 LDP +KTL+FCV+++HADMVV+ L+ AF +Y +E DA+IKITG ADK Sbjct: 696 AQELDPASRRKTLIFCVSDSHADMVVDLLKKAFAAQYGAVEDDAVIKITGAADKPL---- 751 Query: 776 TMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN 835 +I R+ ERLPN+ VTVDLLTTGVD+P ICN+VFLR+V SRIL++QM GRATRLC Sbjct: 752 QLIRRYKNERLPNVAVTVDLLTTGVDVPEICNLVFLRQVNSRILFDQMLGRATRLCNFGG 811 Query: 836 ---KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFA 892 K +F++FD V I+ + + M+PVVV PK+ L E+ + TE Sbjct: 812 TDVKDAFRVFDAVRIFEAIGDMTAMKPVVVNPKITFTQLSQELATLKDESATEL------ 865 Query: 893 EHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPH 952 +Q +AKLQ + DK + + AG++ F +L+ Sbjct: 866 --VRDQFLAKLQAK---------KRHLTDKNRQDFEA----KAGMSVQAFVQKLKAMPLA 910 Query: 953 WSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFD 1012 A F + P L++ + + D + YG P D++ AF Sbjct: 911 DVAAWFVQNPELGELLDR---RSDGPEREMFISEHTDAFDRAERGYGKGKKPDDYIRAFS 967 Query: 1013 SLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAAR 1072 ++ N PAL V+ RPR+LTR L EL D+ F E+SL AW+E N+DIAAR Sbjct: 968 EFIKTQGNQIPALVTVLTRPRELTRAQLRELVLALDQAGFTETSLASAWRELTNQDIAAR 1027 Query: 1073 LIGHIRRAAVGDALKPFEERVDHALTRIKGE----NDWSSEQLSWLDRLAQALKEKVVLD 1128 ++G+IR+AA+GDAL P+ ERVD AL + WS+ Q WL R+A K V++D Sbjct: 1028 IVGYIRQAAIGDALVPYVERVDRALQHLLAHPPAGKPWSTPQRDWLKRIAAQTKANVLVD 1087 Query: 1129 DDVFKTG--NFHRR-GGKAMLQRTFDDNLDTLLGKFSDYIW 1166 F R GG L + F+ L +L F+D +W Sbjct: 1088 RSAIDDPDLIFKREGGGFNRLDKVFNGQLQPVLDAFNDALW 1128 >UniRef50_B6R0S4 Type III restriction enzyme, res subunit family n=5 Tax=Alphaproteobacteria RepID=B6R0S4_9RHOB Length = 1131 Score = 1003 bits (2592), Expect = 0.0, Method: Composition-based stats. Identities = 440/1178 (37%), Positives = 660/1178 (56%), Gaps = 64/1178 (5%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE 60 MM++SNF LK +N + AE + D NT LIK R + E K + E Sbjct: 1 MMSQSNFLHLKALNSDLCRLGMVAEQVFSLDANTCLIKTRQYTEFMVKDVAARAAAYRAE 60 Query: 61 NQHD---LLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVW 117 ++ LL L + + + +FH +R+ GN A H + A L+ L VW Sbjct: 61 DKETAFALLNRLSRDGILPKQVADIFHAVRKPGNDAAHGVEGTSSQALTSLKFCMVLGVW 120 Query: 118 YYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 Y R D +F P F++P+ + L E+ ++Q + ++ ++ A Sbjct: 121 YQRSYGPDVNFEPPPFIVPKAPKVLSV-ELAAEIADYKEQSKLFEDRLKKLAKSDEERAA 179 Query: 178 LNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRT 237 + + + + + + + LE +A+ AE +QTEQ+ + + A K Sbjct: 180 ELDQVRQEAERAVRSLSDLEKQNSELEKAIAKLQAEAEEQTEQQLQKLKTLAQNAAAK-- 237 Query: 238 LNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 L L+E ++R LID QL+ AGW+AD+ LR+S GARPE G N+AIAEWPT G Sbjct: 238 LELNENDTRKLIDRQLQDAGWEADTSILRYSSGARPEKGRNQAIAEWPT------EGGRV 291 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY LFVGL+ + V+EAKR + DVP+ L ++ Y+ + + Sbjct: 292 DYALFVGLECVGVIEAKRQSADVPSVLQQADEYAHKIKLEAKQLLI-------------- 337 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 + WQ + +++PF +++NGR + KTKSGIW+RDVR N + ALP W P+ Sbjct: 338 --DAPWQHGL-DEPYRVPFIFASNGRPFVRQFKTKSGIWFRDVRLHTNHANALPSWFSPD 394 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 +L L + ++ N A+ + LR YQE+A+ AVEK I G++ +L+AMATGTGK Sbjct: 395 DLAGKLKQDTEQANNALAEE-AFGQTSLRPYQEEAIDAVEKEIAGGKRSVLVAMATGTGK 453 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLTDK 536 TRT IA+M+RL++++RFKRILFLVDR +LG+Q A T G F+ I+++ GL K Sbjct: 454 TRTCIALMYRLLKTKRFKRILFLVDRTALGDQTTDALNTTEFEGFYKFSQIYNVAGLDQK 513 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEP---MPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 P+D+T+IHVATVQSLV R +++P + YDCIV+DEAHRGY LD + EGE + Sbjct: 514 LPDDATQIHVATVQSLVARINNTEDPKERLTPGMYDCIVIDEAHRGYTLDADLKEGEENY 573 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFG--EPVYRYTYRTAVIDGFLIDQD 651 R Y SAYR +L +FDAVKI LTATPALHT+QIF +P Y Y YR AV++GFLID Sbjct: 574 RDVSAYESAYRNVLSYFDAVKIGLTATPALHTLQIFDCEKPSYSYGYRQAVVEGFLIDHL 633 Query: 652 PPIQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQD--FEVADFNRGLVIPAFN 708 PP +I T A+ G+ + GE VE + GEV L D+ + +++A FNR + FN Sbjct: 634 PPKRITTALAEAGITFNGGEDVEIVDRHTGEVTLHNLPDEVELEYDLAKFNRRVYSENFN 693 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDAD 768 R VC + N + P KTL+F T+ HAD +V L+ +++Y L +D ++KITG Sbjct: 694 RIVCQTIANEIAPDAPGKTLIFAATDTHADDIVRLLKEELREEYGDLHNDMVMKITGS-- 751 Query: 769 KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 R + +I +F + LP VVTVDLLTTGVDIP + N+VF+R+V+SRILY+QM GRAT Sbjct: 752 --VRDAKGLIKKFRNDPLPKYVVTVDLLTTGVDIPVLANLVFVRRVKSRILYDQMIGRAT 809 Query: 829 RLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADG 888 RLCPE+ K +F+IFD VD+Y+ L+ + MRPVVV+P + L L+ ++ + A+ Sbjct: 810 RLCPEIGKQNFRIFDAVDLYAELQQMSDMRPVVVKPNMPLVELIADLD-----RAPNAEE 864 Query: 889 RSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLRE 948 ++ Q+V K++ + + LD A G + + + L Sbjct: 865 ENWV---AGQVVVKMRALAKRMD---------EAGREALDS----AMGGDADTVINDLSR 908 Query: 949 KGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFL 1008 K + +K P + L + + L + +D+++ ++ ++GD TP+ ++ Sbjct: 909 KTGAEVKDWLSKHPRALENLVRALAKKDPLKNGVAISYHEDQLLHIREVFGDNATPESYI 968 Query: 1009 EAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNED 1068 E+F+ V+ + N+ PA+ AV +PR+LTRK L +L D HF E+ LR A+ RN D Sbjct: 969 ESFEEFVRENMNSIPAMVAVTQKPRNLTRKELTDLAAQLDEAHFSEAMLRAAYGRARNAD 1028 Query: 1069 IAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLD 1128 IAA +IG++R+AA+GD L P+ RV++A+ +I G DW S Q+ WL R+ +ALK+K V D Sbjct: 1029 IAAHIIGYVRQAALGDPLVPYASRVENAIEKIIGSRDWKSNQIQWLRRIGRALKDKPVAD 1088 Query: 1129 DDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 + G F +GG + + FD L +L + ++ IW Sbjct: 1089 PSLLNQGVFQDKGGFKRISKEFDGKLGDVLEEINEAIW 1126 >UniRef50_B2A6M4 Type III restriction protein res subunit n=5 Tax=Firmicutes RepID=B2A6M4_NATTJ Length = 1082 Score = 999 bits (2583), Expect = 0.0, Method: Composition-based stats. Identities = 431/1179 (36%), Positives = 667/1179 (56%), Gaps = 111/1179 (9%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCEN 61 M KSNF+FL G + AE N DPNTT+IK+RMF E K + + N+ E+ Sbjct: 1 MQKSNFDFLTGDWSILSELGEIAEKNLHTDPNTTIIKLRMFAETLVKFIFAVENLEEPED 60 Query: 62 QH--DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYY 119 Q L L K + D++L +FH +R+IGN+A H + +++DA+ LR+ FR++VW+ Sbjct: 61 QKQVSRLAILKKEDLLTDDLLDLFHTIRKIGNKAAHAGYGNIDDAKTLLRMAFRISVWFM 120 Query: 120 RLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALN 179 ++ + +DF P +V PE K E +E+ + + + ++K+ L Sbjct: 121 QVYGR-WDFEPPAYVEPE-------------KIDFESLEKERERLEKIASSYEKKVKKLE 166 Query: 180 GYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLN 239 + L K A ++ E ++ + R+ + L Sbjct: 167 NELNSLRSK-------------------ASRDDEKKERKTKARQ----------LGTGLE 197 Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 L+E E+R +ID +LR GW+AD++T+R+SKG RPE G N AIAEWP G DY Sbjct: 198 LTEAETRTIIDDKLRAVGWEADTETIRYSKGIRPEKGRNLAIAEWPV------KNGSVDY 251 Query: 300 VLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 LFVG++ I ++EAKR + ++ + + ++ +YSK Sbjct: 252 ALFVGMQFIGIIEAKRKSKNIQSDIEQAKQYSKRI-----------------------YQ 288 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 + + + +K+PF ++TNGR Y ++ KSGIW+ D R N + L +W+ PE L Sbjct: 289 VENEEISGPWNGYKVPFLFATNGRPYLKQLEHKSGIWFLDARKKTNHPRPLKDWYSPEGL 348 Query: 420 LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTR 479 ++ ++ + + P + LGLRYYQE+A++A+EK + +G+Q +L+AMATGTGKTR Sbjct: 349 TDLSKKNIEEATKELKEEP-LDYLGLRYYQEEAIKAIEKGLEEGRQSLLIAMATGTGKTR 407 Query: 480 TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLTDKFP 538 AI +++RL++S+RFKR+LFLVDR +LG+QA AF+D+++ ++F IF+++ L P Sbjct: 408 MAIGLIYRLVKSRRFKRVLFLVDRNALGKQAENAFKDSKLESFNSFTEIFELQSLKAPNP 467 Query: 539 EDSTKIHVATVQSLVKRTLQSD---EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 TK+H++TVQ +++R +D + V +YDCIVVDEAHRGY LD E E EL FR Sbjct: 468 NPETKVHISTVQGMMRRIYYNDPEKDKPTVDQYDCIVVDEAHRGYTLDSEMEELELYFRD 527 Query: 596 QLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 DYVS YR++LD+FDAV+I LTATPALHTV+IFG P+Y Y+YR AV+DG+LID +PP Q Sbjct: 528 HNDYVSKYRQVLDYFDAVRIGLTATPALHTVEIFGSPIYTYSYREAVVDGYLIDHEPPYQ 587 Query: 656 IITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 I T+ +EG+ GE+V+ + G++ + +ED+ + +V+ FN+ ++ +FNR V E Sbjct: 588 INTKLKKEGINWQVGEEVDVYDAKSGDIKKEVMEDEVEIDVSQFNKQVITESFNRTVIKE 647 Query: 715 LTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV 774 L NY+ P KTL+F + HAD +V L+ + KY +E +A++KITG + Sbjct: 648 LVNYIHPELEGKTLIFAANDDHADTIVRILKEELENKYGPIEDNAVMKITGS----LKNP 703 Query: 775 QTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV 834 I F ERLPNIVVTVDLLTTGVD+P IC++VF+R+VRSRILYEQM GRATR C E+ Sbjct: 704 LQAIKLFQNERLPNIVVTVDLLTTGVDVPPICSLVFMRRVRSRILYEQMLGRATRRCDEI 763 Query: 835 NKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEH 894 +K F IFD V+IY L+ M+PVV +P V ++ LVNE+ + ++ Sbjct: 764 DKDHFNIFDAVEIYEALKPYTDMKPVVKKPNVPVKQLVNELEQINSTDKQ--------KN 815 Query: 895 SHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWS 954 +Q+ AK+QR ++ +E + + L G + + ++ Sbjct: 816 HIDQIKAKIQRK------SKHWTEEEKENFKAL------TGGKTVDEYIDWMKNSETEEI 863 Query: 955 AEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSL 1014 K + +++ + + DE +S YG+ + P+D+LE F Sbjct: 864 VNELQKSESIVNYIDENRERPQ----YQYISNHKDEHLSTTRGYGNAEKPEDYLEGFKQF 919 Query: 1015 VQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLI 1074 ++ + N PAL+ V RP++LTR+ L +L+ D+Q + E +L+ AW++ +NEDIAA +I Sbjct: 920 IEENINHIPALKVVCQRPKELTREDLRKLKIELDQQGYNEKNLQAAWRDAKNEDIAADII 979 Query: 1075 GHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDD---V 1131 IR+ VGDAL EERV +A+ RI W Q WL+R+ + L E+ VL D Sbjct: 980 SFIRQLTVGDALVSHEERVKNAMKRIYRMKAWPPVQKKWLERIEKQLLEEKVLGPDPEEA 1039 Query: 1132 FKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 F+ F R GG L + FD +D ++ K ++ ++++ Sbjct: 1040 FEVQPFKRHGGYKQLNKIFDGQIDMIVEKINEELFNQEG 1078 >UniRef50_C6CZ63 Type III restriction protein res subunit n=3 Tax=Bacillales RepID=C6CZ63_PAESJ Length = 1083 Score = 988 bits (2554), Expect = 0.0, Method: Composition-based stats. Identities = 439/1174 (37%), Positives = 644/1174 (54%), Gaps = 115/1174 (9%) Query: 6 NFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE--NQH 63 NFEFL + + AE N DPNT+LIK+RMFGE K++ + + + Q Sbjct: 4 NFEFLHDRWEILSDLGEMAERNLFIDPNTSLIKLRMFGETLTKYICAMEEMDETKELTQV 63 Query: 64 DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHE-YHNDLNDAQMCLRLGFRLAVWYYRLV 122 D L +L + + D+I+ H LR+IGN+AVHE + +AQ L FRL+VW+ ++ Sbjct: 64 DRLSQLKRDDLISDDIVDYLHTLRKIGNKAVHESGYGSTREAQASTLLAFRLSVWFMQVY 123 Query: 123 TKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYI 182 D++F P ++ P ++ EV QL+Q R + A+++ + Sbjct: 124 G-DWNFQAPDYIEPVEQQDSAGNEV-----QLDQLARAYEEKMAKLQQE----------- 166 Query: 183 AILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSE 242 LA + T +++K H + + L+E Sbjct: 167 ------------------------LAALRQQQTNVTHEDKKKRHSK--SKQAGSAFALTE 200 Query: 243 EESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLF 302 E+R +ID +LR+AGW+ DS+TLR+ G RPE G N AIAEW GFADY LF Sbjct: 201 AETRLIIDEKLRQAGWEVDSQTLRYGLGTRPEKGRNLAIAEWAL------KTGFADYALF 254 Query: 303 VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETS 362 GL+ + +VEAKR + +V A + ++ +Y+ V Sbjct: 255 CGLELVGIVEAKRISKNVEADIAQAKKYA-----------------MQVVRHGDEIIHGP 297 Query: 363 WQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEM 422 W + +++PF +STNGR Y +K SGIW+ D R N + L W+ P+ L ++ Sbjct: 298 WGN------YQVPFLFSTNGRPYLEQLKHMSGIWFLDARKPTNHPRPLQAWYSPQGLKDL 351 Query: 423 LGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAI 482 L + ++ + D + L LR YQEDA+ +VE AI +GQ+ ILLAMATGTGKTR AI Sbjct: 352 LKQDTEQAAKDLQDE-TLDYLKLRPYQEDAILSVEGAIDEGQRSILLAMATGTGKTRMAI 410 Query: 483 AMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLTDKFPEDS 541 +++RLI+ RFKRILFLVDR +LG QA AF+D+++ +F IF+++ L DK P Sbjct: 411 GLIYRLIKHNRFKRILFLVDRSALGRQAEAAFKDSKLESYHSFTEIFELQTLDDKKPNPE 470 Query: 542 TKIHVATVQSLVKRTLQSD----EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 TK+ +ATVQ +VKR ++ E V +YDC++VDEAHRGY LDKE +E EL+FR Sbjct: 471 TKVQIATVQGMVKRIFYNESDEAEIPSVDQYDCVIVDEAHRGYTLDKEMSELELEFRDHE 530 Query: 598 DYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQII 657 DYVS YR++LD+FDA +I LTATPALHTV+IFG PV+ Y+YR AVIDG+LID +PP+Q Sbjct: 531 DYVSKYRKVLDYFDAFRIGLTATPALHTVEIFGRPVFNYSYREAVIDGYLIDHEPPMQFE 590 Query: 658 TRNAQEGVYLSKGEQVERIS-PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT 716 T+ + G+ GE+V G V + L+D+ + EV FN+ ++ FNR + ELT Sbjct: 591 TQLKKHGIKWQVGEEVAVYDISSGNVEKELLQDEINLEVTQFNKTVITENFNRVILEELT 650 Query: 717 NYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQT 776 Y+DP KTL+F T+ HADMVV + +K Y ++ +A++KITG + Sbjct: 651 KYIDPESEGKTLIFAATDDHADMVVRIFKEELEKAYGAVDDNAVLKITGSI----KDPLH 706 Query: 777 MITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNK 836 I F ERLP+IVVTVDLLTTG+DIPSI N+VFLR+VRSRILYEQM GRATR C E+ K Sbjct: 707 TIKLFKNERLPSIVVTVDLLTTGIDIPSITNLVFLRRVRSRILYEQMLGRATRRCDEIGK 766 Query: 837 TSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSH 896 F I+D V IY TL+ M+PVV +P V L L +E+ E + Sbjct: 767 DHFMIYDAVGIYETLKPYTDMKPVVTKPTVSLDVLTSELAQLEDEGQ--------GKPHK 818 Query: 897 EQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAE 956 +Q++AK+QR + R+ T D+ + G++ F L+ ++ Sbjct: 819 DQIIAKMQR--------KKRTWTQKDH----DDFKALSGGMSIEKFIDDLKSMSVLQASA 866 Query: 957 VFNKLPGFIARLEKLKTDINNLNDAPI-FLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLV 1015 +A +++ N I + +D+++S YG+ D P+D+LE F + + Sbjct: 867 DLQTKKPLVAYIDE-----NRGRGHRIYISEHEDKLISTSRGYGNADKPEDYLEGFHAFI 921 Query: 1016 QRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIG 1075 + N PAL + RP DLTR L L+ D++ + E L+ AW++ +NEDIAA +I Sbjct: 922 TENLNLIPALTIICTRPNDLTRDELRRLRVELDQKGYSEKMLQAAWRDAKNEDIAADIIS 981 Query: 1076 HIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDD---VF 1132 IR+ A+GD L EER++ A+ +I WS Q WL R+ + L ++ VLD + F Sbjct: 982 FIRQQALGDPLISHEERIEGAMKKIYDMKVWSKVQKDWLKRIEKQLLQESVLDPNPEKAF 1041 Query: 1133 KTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 + F +GG L + FD +DT++ + ++ Sbjct: 1042 EVEPFKSKGGYKQLNKIFDGEMDTIVTTINTALY 1075 >UniRef50_A6TLK4 Type III restriction protein, res subunit n=3 Tax=Clostridiaceae RepID=A6TLK4_ALKMQ Length = 1086 Score = 978 bits (2528), Expect = 0.0, Method: Composition-based stats. Identities = 435/1183 (36%), Positives = 654/1183 (55%), Gaps = 117/1183 (9%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE--- 60 KSNFEFL + AE+ D N++LIK+ +FGE + L + P E Sbjct: 2 KSNFEFLNKTFPVLANLGSTAESYLYSDANSSLIKLGLFGETIVNLMLKLDQMEPPEYDN 61 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 + ++ L K + NI + + LR N+AVH ++ D + L +G LA+W+ + Sbjct: 62 THANRIKLLKKEGLISQNIDDIIYSLRIARNKAVHSGYDSFEDCVILLEMGHNLAIWFMQ 121 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 D+ + FVLP Sbjct: 122 TYG-DWQYAPAEFVLP-------------------------------------------- 136 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQA-IKRTLN 239 + +A +A L E +A ++ KQ + + + + A + Sbjct: 137 -------EDNSQQADFEALLKEKEELIAVLTEKVLKQKPSKTLSSKERLKRAASASEMMK 189 Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 LSE+E+R+LIDAQLRK GW+ D+ LR+SKG RP+ G N AIAEWPT G+ G+ADY Sbjct: 190 LSEKETRYLIDAQLRKVGWEVDTVNLRYSKGTRPQKGKNIAIAEWPTN-SSVGDHGYADY 248 Query: 300 VLFVGLKPIAVVEAKRNNIDVPARLN-ESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VLF+GLK + ++EAKR +D+P+ L+ + Y+K + E Sbjct: 249 VLFIGLKLVGIIEAKRMFLDIPSVLDYQCKDYAKNIKD-----------------EHAEY 291 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 SW + +K P ++TNGR+Y ++TKSGIW+ DVR N+ KA W P+ Sbjct: 292 MIDSWGE------YKAPLLFATNGRKYLKQLETKSGIWFLDVRKPANIPKAQQGWMSPDG 345 Query: 419 LLEMLGSEPQKQNQWFADNP-----GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 +LE+L + + N + P L LR YQ DA+ A EKAI++G+Q LL+MAT Sbjct: 346 ILELLEKDIEAANASLEELPYDLLRDKDGLNLREYQIDAIEAAEKAIIEGKQTALLSMAT 405 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKG 532 GTGKTRT + M++R +++ RFKRILFLVDR +LGEQA F++ ++ T + I++IK Sbjct: 406 GTGKTRTVLGMIYRFLKTGRFKRILFLVDRSALGEQAQDVFKEVKLEDLMTLDEIYNIKN 465 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVA--RYDCIVVDEAHRGYILDKEQTEGE 590 L D+ + TKI VATVQSLVKR L + + + YD IV+DEAHRGYILDKE E E Sbjct: 466 LEDRMIDKETKIQVATVQSLVKRILDNQDETMPSIIDYDLIVIDEAHRGYILDKEMDEDE 525 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQ 650 + +R+Q DY+S YR ++++FD+VKIALTATPALHT +IFG+PVY YTYR AV++G+L+D Sbjct: 526 ILYRNQDDYISKYRAVIEYFDSVKIALTATPALHTSEIFGKPVYNYTYREAVVEGYLVDH 585 Query: 651 DPPIQIITRNAQEGVYLSKGEQVERISP-QGEVIN-DTLEDDQDFEVADFNRGLVIPAFN 708 D P I+T+ ++EG+ KGE V P GE++N D LED+ F+V FNR ++ +FN Sbjct: 586 DAPHTIVTKLSKEGINYEKGETVAIYDPVTGEIMNSDELEDELKFDVEKFNRQVITESFN 645 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD-A 767 R V E++ LDP G KTL++ V ++HAD++V+ L+ F+ +++DAI+KITG Sbjct: 646 RTVLIEISKELDPEGEGKTLIYAVDDSHADLIVKILKEIFEPYG--VDNDAIMKITGSVG 703 Query: 768 DKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 + +KV + RF E+ PNI VTVDLLTTG+D+P I +VF+R+V+SRIL+EQM GRA Sbjct: 704 GGNKKKVLEAVKRFKNEKYPNIAVTVDLLTTGIDVPEITTLVFMRRVKSRILFEQMMGRA 763 Query: 828 TRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEAD 887 TRLCPE+ KT F+I+D + +Y +L+ V+TM+PVV P + L+ + T K Sbjct: 764 TRLCPEIGKTHFEIYDPIGVYESLQPVNTMKPVVANPSTSFEDLLTGLEVLPTEKQ---- 819 Query: 888 GRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLR 947 ++ + ++AKLQR + + + G + F +++ Sbjct: 820 ----IKNQIDMIIAKLQRKKRSMNE------------KTMAHFIDLSGGQDPTEFIGKIK 863 Query: 948 EKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDF 1007 + E K L K N+ A + D +DE++S YG+ P+D+ Sbjct: 864 GMSAEDAKEHIIKNKKLFDML---KEGTNDPRRAVVISDKEDELLSHTRGYGEGKKPEDY 920 Query: 1008 LEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNE 1067 LE F + + + N AL V RP++LTR L L+ DR F E L AWKE +N+ Sbjct: 921 LEEFKTFITNNFNKIVALNIVCTRPKELTRDSLKSLKLELDRHMFTEQQLNTAWKEVKNQ 980 Query: 1068 DIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVL 1127 DIAA +I IR+ A+G L EER+ +A+ R+K +D++ +L W++R+ + L + +L Sbjct: 981 DIAADIISFIRQQAIGSTLLSHEERIKNAVDRLKKNHDFNKMELGWIERIEKNLLLESIL 1040 Query: 1128 DDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 D F+TG+F GG + + F + LD ++ + ++Y++D+ Sbjct: 1041 DQATFETGSFKTAGGYNKINKIFKNQLDDIIQELNEYLYDDGG 1083 >UniRef50_B0QS40 Type III restriction enzyme, res subunit n=1 Tax=Haemophilus parasuis 29755 RepID=B0QS40_HAEPR Length = 1121 Score = 977 bits (2525), Expect = 0.0, Method: Composition-based stats. Identities = 440/1175 (37%), Positives = 674/1175 (57%), Gaps = 63/1175 (5%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCEN-- 61 ++NF FL+ + AE + +DPNT++ K+R FGE AK + + + EN Sbjct: 2 ETNFSFLQA-FPTLFKQVQFAERYFSEDPNTSMYKLRQFGEFLAKQIAVRFRLALPENIT 60 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRL 121 Q+D L+ L +D ILS+FH L+ GN+AVHE D A + ++L++W+ R Sbjct: 61 QNDRLKALK-ECRLDREILSMFHFLKNAGNEAVHEGIEDSQKAITAMIAAWQLSIWFVRT 119 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 + PV P+ + + + E L + E + + Q VEA Q ++ A++ Sbjct: 120 FGDNMANFEPVPFCPDYLQAVRNNE--NLAKYTENPTASQQEEQQLVEANQAEIQAISTA 177 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 ++ ++E + QA A E + A Q + K Y + L Sbjct: 178 LS------NQSEEEKQAFDVAREKR--------AAQAFERLKNYELRL----------LD 213 Query: 242 EEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E+++R L ID LR+AGW+ADS+ L + KG RPE G AIAE+P GKD ADYV Sbjct: 214 EKQTRLLMIDPMLREAGWEADSENLDYRKGVRPEKGRYLAIAEYPVGKD------RADYV 267 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LF GL P+A+VEAK+ N++V +++ ++ RY+K F+ + E+ + V Sbjct: 268 LFCGLVPVAIVEAKKANVNVASKVAQAERYAKQFE-------ITENLTAPWVLAKRTVAW 320 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 S + + F +PF YS NG+ Y SG W+RDVR N+ +AL ++H P+ LL Sbjct: 321 ASDESANDGLHFYVPFVYSCNGKPYLKQQLELSGTWFRDVRQPSNLKRALQQFHTPDVLL 380 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 EML + ++ Q + P LGLR YQE A++AVE+ + +G++E+LLAMATGTGKTRT Sbjct: 381 EMLKKDEEQATQKLENEP-FDFLGLRPYQEKAIQAVEQNLSEGKREMLLAMATGTGKTRT 439 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDIKGLTDKFPE 539 ++ R +++ RF+RILFLVDR +L EQA F + + T N++++ + E Sbjct: 440 ITGLIHRFLKTDRFRRILFLVDRTALAEQAEDTFGGMNVEPNQTLNTLYNF--AVNGVVE 497 Query: 540 DSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDY 599 TK+ VATVQSLVK+ S E + ++DCI+VDEAHRGY LD+E T+GEL+F+ Y Sbjct: 498 PETKVKVATVQSLVKQIFYSGEAPAIDQFDCIIVDEAHRGYTLDQEMTDGELEFQDNEQY 557 Query: 600 VSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITR 659 +S YRR+LD+FDAVKI LTATPALHT +IFGEPV+ Y+Y+ AVID +L+D +PPI+I T+ Sbjct: 558 LSTYRRVLDYFDAVKIGLTATPALHTKEIFGEPVFVYSYKEAVIDDYLVDHEPPIEIKTK 617 Query: 660 NAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNY 718 Q+G++ +GEQ+E I GEV+ L D+Q+F+V FNR ++ +FN+ VC L +Y Sbjct: 618 LNQDGIHFERGEQLEFIDTSTGEVVLSELADEQNFDVESFNRTVLNDSFNQVVCEVLLDY 677 Query: 719 LDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYP-QLEHDAIIKITGDADKDARKVQTM 777 LDP GS+KTL+FC T+ HAD + L FK+KY + +++ KITG ADK T+ Sbjct: 678 LDPFGSEKTLIFCATDLHADKIKGILDTLFKQKYGDEYNTNSVAKITGQADKP----NTL 733 Query: 778 ITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKT 837 I F ER PNI +TVDLL+TG+D+P ICN+VFLR+V+SR+LYEQMKGRATR C + K+ Sbjct: 734 IKYFKNERYPNIAITVDLLSTGIDVPEICNLVFLRRVKSRVLYEQMKGRATRKCEALGKS 793 Query: 838 SFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHE 897 F I+D V + + SVDTM+P+V + LV E+ + E + A + Sbjct: 794 VFHIYDAVGLCRAMASVDTMKPIVKNVHQPISQLVEEL---QAVGKIENNTNPLANEHQQ 850 Query: 898 QLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEV 957 L+ ++ + I D+ Q++ + + GV N L + G + + Sbjct: 851 ALLEQISQKIMRLLRKADKMAEKSPQMKENLAILEQEWGVKPNLLHKHLLKIGVQGAVQF 910 Query: 958 FNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQR 1017 F K + +L+ + + P+ +DEV + +YG ++ D+L+ F +Q+ Sbjct: 911 FEKHRNILTEFNRLQAMLPS-ERMPVISTHEDEVREITPIYGKGESADDYLQEFMVYIQQ 969 Query: 1018 SPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHI 1077 N A+Q +INRPR+LTR+ L +++ D Q F ++ L KA + N I A ++ HI Sbjct: 970 HSNDNVAIQVIINRPRNLTRQQLKDIELALDAQGFSKAKLNKAMGQKTNRQITAGIVAHI 1029 Query: 1078 RRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNF 1137 RRAA+GD+L PFE+RVDHA+ ++ + + Q WL+R+A+ LK+ D++ Sbjct: 1030 RRAAIGDSLVPFEQRVDHAIEKLCQTHSFKPNQQKWLERIAKQLKQN---HDEILDRSRL 1086 Query: 1138 HR--RGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 +G + ++ F + LD LL + ++ +W+++ Sbjct: 1087 TELFQGQFSGIRAEFGETLDELLAELNEGLWEKMG 1121 >UniRef50_C7GDQ4 Type I restriction-modification system, R subunit n=5 Tax=Bacteria RepID=C7GDQ4_9FIRM Length = 1091 Score = 963 bits (2489), Expect = 0.0, Method: Composition-based stats. Identities = 402/1185 (33%), Positives = 642/1185 (54%), Gaps = 116/1185 (9%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHL--GLLLNIPPCEN 61 KSNF+FL+ C AE DPN+ L+K+ M GE+ + + +P Sbjct: 2 KSNFDFLQSEFPVLSTFGCLAEKYCFSDPNSCLMKLGMIGESIVNLMFTYDRIQLPYDNT 61 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRL 121 + L + + ++ + H LR+ N+AVHE + +++ ++ L + + L W+ + Sbjct: 62 AVTRIDNLQREGLLTRDLTDILHALRKARNKAVHENYESVSECKILLEMAYSLCEWFMQT 121 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 D+++ FV+P+ ++ + TQ E A+++++ L Sbjct: 122 YG-DWNYQHHDFVMPKLEH------------------KKVSVTQEEKAAEEKQVEELT-- 160 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 KQ E +A ++ E Q ++ ++A Q + S Sbjct: 161 ------KQAEQKASMADAISKSERQ--KRAGKMASQRPK--------------------S 192 Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 E E+R++ID QLR+ GW+AD++ LR+SKG RP G N AIAEWPT G G DY L Sbjct: 193 EAETRYIIDEQLRQVGWEADTENLRYSKGTRPAKGHNMAIAEWPTN-STLGQSGRVDYAL 251 Query: 302 FVGLKPIAVVEAKRNNIDVPARLN-ESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 FV K I V+EAK + D+P+ ++ + Y + + + E Sbjct: 252 FVDTKLIGVIEAKAIHKDIPSVIDYQGKEYPRNIRKEDSKYKIGE--------------- 296 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 +K+PF ++TNGR Y ++TKSGIW+ D+R+ N AL W P ++ Sbjct: 297 --------WGEYKVPFTFATNGRPYLKQLETKSGIWFLDLRNPVNNPTALHGWMSPMGMI 348 Query: 421 EMLGSEPQKQNQWFADNP-----GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 E+L PQ+ N P + L LR YQ +A++A E+++++G++ ILLAMATGT Sbjct: 349 ELLEKNPQEGNSALKALPYDFLTDPNGLNLREYQLNAIKAAEQSVIEGKKNILLAMATGT 408 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLT 534 GKTRT + M++R +++ RFKRILFLVDR SLGEQA F++ ++ T + I++IKG Sbjct: 409 GKTRTVLGMIYRFLKTNRFKRILFLVDRTSLGEQAADVFKEVKLEDLMTLDEIYNIKGFE 468 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDEPMPVA--RYDCIVVDEAHRGYILDKEQTEGELQ 592 +K + T+I VATVQS+VKR L +D + A YD +++DEAHRGYILDKE + E+ Sbjct: 469 EKNIDKETRIQVATVQSMVKRILYNDGEIMPAVTDYDLVIIDEAHRGYILDKEMGDTEIL 528 Query: 593 FRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDP 652 +R Q DY S YR ++++FDAVKIALTATPAL T +IFG+PV++YTYR AVI+G+L+D D Sbjct: 529 YRDQRDYQSKYRSVIEYFDAVKIALTATPALQTTEIFGQPVFKYTYREAVIEGYLVDHDA 588 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQGEVIN--DTLEDDQDFEVADFNRGLVIPAFNRA 710 P + T+ + G++ G+ V P I + L D+ DF+V FNR ++ FN+ Sbjct: 589 PHHLETKLSTGGIHYKSGDTVMIYDPVTGEITNSELLVDELDFDVEQFNRQVITENFNKT 648 Query: 711 VCNELTNYLDPTGSQ---KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD- 766 V +E+ +DP + KTL++ V + HADM+V LR + K + ++AI+KITG Sbjct: 649 VLSEIARDIDPENPEEQGKTLIYAVDDQHADMIVSILRDIYSKYG--VSNEAIMKITGSV 706 Query: 767 ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 + +KVQ I F E P+I VTVDLLTTG+D+P I +VF+R+V+SRIL+EQM GR Sbjct: 707 GGGNPKKVQEAIKCFKNENYPSIAVTVDLLTTGIDVPEITTLVFMRRVKSRILFEQMLGR 766 Query: 827 ATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEA 886 ATRLCP+++KT F+I+D V +Y +L V+TM+PVVV P L++ +++ K T Sbjct: 767 ATRLCPKIHKTHFEIYDPVGVYDSLNDVNTMKPVVVNPTTSFTQLLDGLSEINDDKQT-- 824 Query: 887 DGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRL 946 E Q++AKLQR + + +D G + + + Sbjct: 825 ------EQQITQIIAKLQRKKR------------NMSPKMMDYFISMTDGKDPSQLIMEI 866 Query: 947 REKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQD 1006 + + ++ K +++ K N + + D +DE+ YG+ + P+D Sbjct: 867 EKSDVQEAKKLLFKYRDVFKMMQETKA---NGSRPVVVSDAEDELTEHSRGYGNAEKPED 923 Query: 1007 FLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRN 1066 +L AF +Q + N AL + RP+DLTRK L +L+ DR+ F L A E N Sbjct: 924 YLNAFSRYIQSNQNKIAALNIICTRPKDLTRKDLKDLRLTLDREGFTTQQLNTAIYELTN 983 Query: 1067 EDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVV 1126 E+I A +I IRR A+G L E R+ A+ +++ ++++S ++ SW+ R+ + L + + Sbjct: 984 EEIMADIISLIRRYAIGSTLISHEARIHRAVEKLRKKHNFSKQEQSWISRIEKYLLGESI 1043 Query: 1127 LDDDVFK-TGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 ++ VF + GG + + F +NL++++ + ++Y++D+ Sbjct: 1044 MNVKVFDEDSRYASYGGFNKINKVFQNNLESIVLELNEYLYDDGG 1088 >UniRef50_C6JN68 Type I restriction enzyme EcoKI subunit R n=4 Tax=Fusobacterium RepID=C6JN68_FUSVA Length = 1088 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 415/1175 (35%), Positives = 630/1175 (53%), Gaps = 106/1175 (9%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL--LNIPPCENQ 62 +NF+FLK + I AE DPNT +IK+R GE AK + + LN P +Q Sbjct: 3 TNFQFLKKDWNILAKIGEMAEYTLHKDPNTAIIKIRQLGEYIAKSMLKVEKLNEPESGSQ 62 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 D ++ L + ++I ++ +R+ GN AVH + ++A+ L L +L W+ + Sbjct: 63 LDRIKILKTYDLIPEDIENILQLIRKKGNTAVHNMSGNESEAETLLSLVVKLCGWFNEIY 122 Query: 123 TKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYI 182 DY F + Y + L +++++ ++ + E Sbjct: 123 GSDYSFNSESVQYKKPERVDYKEAYEKLLSKVQEEKKKFDELVPE--------------- 167 Query: 183 AILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSE 242 +L+ +T +ER K K+++ L+E Sbjct: 168 ------------------------------QLSFRTSEERIKLIKN------KKSVELTE 191 Query: 243 EESRFLIDAQLRKAGWQADSKTLRF-SKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 EE+R LID QLR AGW+AD+ L + S PE AIAEWP K E G G+ DY L Sbjct: 192 EETRALIDQQLRDAGWEADTIKLNYKSNKTMPEKSRFMAIAEWPCIK-EDGKNGYVDYAL 250 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 F G +EAKR +DV L R S+ + G + +P+ Sbjct: 251 FYGNTLYGTLEAKRKKVDVGNAL---KRESRMYSKGVI----------------IPDGIK 291 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 + +K PF +S+NGR Y + KSGIW+ D R +N KAL ++ P +L E Sbjct: 292 LCDEAPFLGEYKAPFMFSSNGRAYNKELIDKSGIWFLDGRRQKNAPKALKGFYSPRDLKE 351 Query: 422 MLGSEPQKQNQWFADNP-----GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 +L + N+ D P S LGLR YQ +AV+AVE+A++KGQ ++LL MATGTG Sbjct: 352 LLAKDEMLANKLLQDEPMEYLKSKSGLGLRNYQIEAVKAVEEALIKGQNKVLLTMATGTG 411 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDIKGLTD 535 KTRTA+A+++RL++S+++ RILF+VDR SLGEQA F++ +++ + I+DIKGL D Sbjct: 412 KTRTALAILYRLLKSKKYNRILFVVDRASLGEQAKDTFDNVKVDQQLKISEIYDIKGLKD 471 Query: 536 KFPEDSTKIHVATVQSLVKRTLQ-SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 K PED+TKIHVATVQ L+KR L +D+ + V +YDCIV+DEAHRGYILD+ TE E F Sbjct: 472 KKPEDTTKIHVATVQGLIKRVLYSNDDAITVGQYDCIVIDEAHRGYILDRIPTEEEAFFN 531 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPI 654 + +Y S YR ++D+F+A KIALTATPA+HT +IFGEPVY+Y+YR AV+DG L+D +PP Sbjct: 532 DEKEYQSKYRSVIDYFEADKIALTATPAVHTYEIFGEPVYQYSYRQAVLDGNLVDFEPPY 591 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGEVIN--DTLEDDQDFEVADFNRGLVIPAFNRAVC 712 +IITR + +G++ KG +++ + + I L+D+ DF+V FN ++ FNRAVC Sbjct: 592 RIITRLSSDGIHFEKGSEIKVFDSETQEIKVIKDLKDELDFDVDKFNTKVITEGFNRAVC 651 Query: 713 NELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKK-KYPQLEHDAIIKITGDADKDA 771 + L NY++P G +KTLVF T+ HADM+V LR F K + + +D I KITG Sbjct: 652 SALVNYINPEGPEKTLVFAATDEHADMLVRILREEFDKLEMYSMNNDMIEKITGS----V 707 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 + V +I +F E P I VTVDLLTTG+D+P ICN+VFLRKVRSRILYEQM GRATRLC Sbjct: 708 KDVDKLIKKFKNENYPTIAVTVDLLTTGIDVPKICNLVFLRKVRSRILYEQMIGRATRLC 767 Query: 832 PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSF 891 E+NK FKI+D VDIYS L+ M+PVV PK+ L+ L+ ++ + Sbjct: 768 EEINKEYFKIYDAVDIYSDLKDYTDMKPVVADPKINLKKLLGDLDKIDG-------NDKN 820 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP 951 + ++++ ++QR ++ + + + + L+ Sbjct: 821 IGYLLDEVIGRIQRKKNRIKKAGS------DHLKTFSGYMRGEEISDIDEYIDYLKNTPK 874 Query: 952 HWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAF 1011 E K F+ L+ LK + + DE+ +K +G + P+D+LE F Sbjct: 875 EKIYETLMKEKKFLLHLDGLKIA----EKEKVIYEHTDEIKYIKQDFGKAERPEDYLEGF 930 Query: 1012 DSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAA 1071 + S + A++ + P+D + L E+ + D + + +++L A+K+ +NEDI A Sbjct: 931 RKYILNSSDKIEAIKILKKSPQDFKKTDLEEITKILDLEGYSKANLNAAYKQVKNEDILA 990 Query: 1072 RLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDV 1131 ++ I+ A G + EE+++ + +IK +WS +Q + L+R+ L+ L + Sbjct: 991 DMLTFIKNAIYGSPIIDREEKINDVMIKIKRLKNWSPKQKTILERIESLLRSDGYLTKED 1050 Query: 1132 FKTGNFHR-RGGKAMLQRTFDDNLDTLLGKFSDYI 1165 F+ G GG + + + + LD +L S I Sbjct: 1051 FEGGILKETYGGYSKVDKNLEGMLDEILNVISKEI 1085 >UniRef50_Q26D94 Type I restriction-modification system, R subunit n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26D94_9BACT Length = 1070 Score = 889 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 394/1176 (33%), Positives = 607/1176 (51%), Gaps = 123/1176 (10%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE-NQH 63 S+F FLK + IA +E DP+++L K R+ E ++ + + Q Sbjct: 2 SHFNFLKDDYPTLFVIAELSEQLIHVDPSSSLSKTRLLAEKMSQLIWDFEQMGDFNGTQL 61 Query: 64 DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLVT 123 D L L + + I +FH +R+ GNQA H + A+ L+ F+L+ W+Y Sbjct: 62 DRLNRLAYSNILPEVIEGIFHTIRKSGNQASHYGTGSFDQAKFILKKTFKLSKWFYETYE 121 Query: 124 KDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIA 183 D+ +P + LP + H+ Sbjct: 122 NDF-LELPAYELPVVVDERAHE-------------------------------------- 142 Query: 184 ILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEE 243 L+G+ E Q Q A +E + K + +++ + A R ++L+E Sbjct: 143 -LQGQLDFLEQQLQDYKAKIEKLNSSKEVQETRKSRSNKSA-----------RNIDLNEH 190 Query: 244 ESRFL-IDAQLRKAGWQADSKTLRF-SKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 ++R L ID L+KAGW+ D+ L + + PE G N AIAEW + +ADY L Sbjct: 191 DTRILLIDPALKKAGWEVDTDLLNYKTHKTLPEKGRNMAIAEWYC------DGKWADYAL 244 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 FVG +VEAKR D+ L +S Y++ + E L Sbjct: 245 FVGTTLYGIVEAKRYRSDISTDLRQSKIYAERVTDAQDIERL------------------ 286 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 +K+PF +STNGRE+ +KTKSGIWY D+R N + AL W P+ L+E Sbjct: 287 -----GNWHGYKVPFLFSTNGREFLEQLKTKSGIWYLDIRKKDNHAAALKGWFSPQGLVE 341 Query: 422 MLGSEPQKQNQWFADN-----PGMSELGLRYYQEDAVRAVEKAIVK--GQQEILLAMATG 474 + + + N + + L LR YQ DA++ VEK I++ +Q LL MATG Sbjct: 342 LYERDIDESNDRLEKSDYDYLADKTGLSLRDYQIDAIKKVEKKIIERPEEQRSLLVMATG 401 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI-NGDTFNSIFDIKGL 533 TGKTRT I + +RLI+S RFKRILFL DRR L QA+G ++D +I N +TF ++ ++ L Sbjct: 402 TGKTRTVIGLSYRLIKSDRFKRILFLTDRRMLATQAIGNYQDNKIENLNTFADVYQLEEL 461 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 D P+ T++H ATVQS+VKR +++P+P+ YDCI++DEAHRGY LDKE E +L F Sbjct: 462 KDTTPDGETRLHFATVQSMVKRLFYNEDPLPIDSYDCIIIDEAHRGYNLDKEIDEDDLSF 521 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPP 653 + Q DYVS Y++++++F+A I LTATPALHT QIFGEPV+ Y+YR AV+DG LID +PP Sbjct: 522 KDQDDYVSQYKKVIEYFNAYIIGLTATPALHTTQIFGEPVFSYSYRQAVLDGHLIDYEPP 581 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQGEVIND--TLEDDQDFEVADFNRGLVIPAFNRAV 711 I T+ EG+ KGE+ + +P+ I + L+D+ FE+ FN+ ++ FNRAV Sbjct: 582 YNIKTKLNSEGIVWKKGERPKAYNPETGKIEELAALDDELKFEIDQFNKLVITEPFNRAV 641 Query: 712 CNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 +L +DP +KTL+F + HAD++V+ + F ++E I KITG + Sbjct: 642 IKQLVQIIDPESEEKTLIFAARDEHADLIVKIFKEEFDAIGCRVEQGTIEKITGKS---- 697 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 Q + T+F E+ P I VTVDLLTTG+D+P I N+VFLR+VRSRILYEQM GRATR C Sbjct: 698 YNPQELTTQFKNEKFPTIAVTVDLLTTGIDVPKITNLVFLRRVRSRILYEQMVGRATRKC 757 Query: 832 PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSF 891 E+NK FKI+D V +Y LE +RPV P++ Q L E+ D Sbjct: 758 DEINKEVFKIYDAVRLYEALEDFIQIRPV-SDPRISFQQLAQEME--------HIDNDDR 808 Query: 892 AEHSHEQLVAKLQ-RIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKG 950 A+ ++++AK Q + + +R+ + Q + DEL + A+ + E G Sbjct: 809 AQRQMQKIIAKFQVKKRQIEKVDRNEELQYNAQGKTADELLNIFKNAQGSEVATIIEEYG 868 Query: 951 PHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEA 1010 W K + D +DE ++++ +G+ P D++E+ Sbjct: 869 SLW----------------KFLDQKFTRPGMQMVADQEDEFIAMEQKFGEAQKPGDYIES 912 Query: 1011 FDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIA 1070 F+ + N A++ ++ P L R L EL+ D+ F E L AW++++NEDIA Sbjct: 913 FNHYIATHRNKVLAIKTILTSPNSLDRTSLKELKMMLDQDGFNERYLNAAWRQSKNEDIA 972 Query: 1071 ARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDD 1130 A ++ +IR AA+G+AL E+R+ A ++K ++++ QL WL R + + VL + Sbjct: 973 ADIVSYIRTAALGEALVAHEDRIKSAFAKVKQSKNFNALQLKWLTRFEAQMLAETVLTKE 1032 Query: 1131 VFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 F GG + + F + ++ ++ +++++ Sbjct: 1033 DLDKEPFKSDGGFKRINKQFQEEVEQVIDSINNHLY 1068 >UniRef50_C3WJB8 Type III restriction protein n=2 Tax=Fusobacterium RepID=C3WJB8_9FUSO Length = 1085 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 404/1179 (34%), Positives = 631/1179 (53%), Gaps = 117/1179 (9%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQ-- 62 SNF FL+ I AE DPNT ++K+R FGE + + N + Sbjct: 3 SNFNFLQNDWQGLAKIGEMAEYILYKDPNTAIMKLRQFGEELINTMIKIENFSCDKTTLA 62 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 D + L + + D+I ++ H LR+ GN+A H + D A+ L L +L W+ + Sbjct: 63 VDKILILKRAGLIPDDIDNILHSLRKKGNKAAHGAYGDEKTAETLLSLAVKLGAWFQEIY 122 Query: 123 TKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYI 182 D F H E + K+ + E + QKLV Sbjct: 123 GTDMSF---------------HSETIEYKKP----------ENIDYEKEYQKLV------ 151 Query: 183 AILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSE 242 E + Q L + + N L + E +KA K KR + +E Sbjct: 152 --------ERTDEIQKELEDI-----KTNPHLTTR-EDRKKAISK-------KREIEFTE 190 Query: 243 EESRFLIDAQLRKAGWQADSKTLRF-SKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 EE+R +ID QL +AGW+ D+K L + + PE N AIAEWP K E G +GFADY L Sbjct: 191 EETRLIIDKQLAEAGWEVDTKVLNYKTNKTLPEKKKNLAIAEWPCIK-ENGRKGFADYAL 249 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYR-YSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 F+G K ++EAKR N D+PA LN R YSK + + Sbjct: 250 FLGEKLYGILEAKRLNTDIPAALNADSRIYSKGVEIFENAQ------------------- 290 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 + S +K PF +S+NGR Y + KSGIW+ D R N+ K L ++ P++L Sbjct: 291 --LCEGSPFGEYKAPFLFSSNGRGYNKDLPEKSGIWFLDARKESNLPKVLKGFYSPKDLK 348 Query: 421 EMLGSEPQKQNQWFADNPG-----MSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 E+L + + NQ + LGLRYYQ+DA+++VE++++ G++++LL MATGT Sbjct: 349 ELLEKDDELANQKLKEESFEYLESKFGLGLRYYQKDAIKSVEESLISGKKKVLLTMATGT 408 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDIKGLT 534 GKTRTA+ +++RL+++ +FKRILF+VDR LGEQA F+D +I + I+ +KGL Sbjct: 409 GKTRTALGLIYRLLKTNKFKRILFVVDRTLLGEQAKETFDDVKIEQLLSLGGIYGVKGLN 468 Query: 535 DKFPEDSTKIHVATVQSLVKRTL----QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 DK + ++H+ATVQSL+KR L + E + V YDCI+VDEAHRGYILD+ E + Sbjct: 469 DKSTDKDERVHIATVQSLIKRILYPNTEEKEKLTVGEYDCIIVDEAHRGYILDRNMKEEQ 528 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQ 650 F + D+ S Y+ ++D+FDAVKIALTATPALHT +IFGEPVY Y+ AVIDG+L+D Sbjct: 529 KDFFDEKDFESKYKAVIDYFDAVKIALTATPALHTQEIFGEPVYSYSCSQAVIDGYLVDV 588 Query: 651 DPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND--TLEDDQDFEVADFNRGLVIPAFN 708 +PP +IIT+ ++EG++ KG V+ + + + + L D+ DF++ FN+ ++ +FN Sbjct: 589 EPPYEIITKLSEEGIHYQKGAMVKVYDVEAQKVKEREVLADELDFDIEKFNKSVITESFN 648 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYP-QLEHDAIIKITGDA 767 R VC+ L +Y++P G +KTL+F ++ HADMVV LR ++K+ + + I K+TG Sbjct: 649 REVCSALVDYINPEGPEKTLIFTASDEHADMVVRILREEYQKQAMFDMNIEMIAKMTG-- 706 Query: 768 DKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 + V ++ +F E P I VTVDLLTTGVD+P I N+VFLRKV+SRILY QM GRA Sbjct: 707 --YVKDVDHLVKKFKNEAYPTIGVTVDLLTTGVDVPRITNLVFLRKVKSRILYHQMLGRA 764 Query: 828 TRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEAD 887 TR C E++KTS+K+FD Y ++ M PVV P+++++ L+ DS + + + Sbjct: 765 TRKCDEIDKTSYKVFDAARNYVDMKDFSDMNPVVNNPQIDMEKLL----DSYSKDVPDES 820 Query: 888 GRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLR 947 + F E Q++A+LQR + I+ ++ R +E + N + + ++ Sbjct: 821 KKYFIE----QVIARLQRKKKRIKDLGENKFEINSKIYRKNEDIK-----NIDDYIEYIK 871 Query: 948 EKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDF 1007 P + K F+ L+ + N I + +DEV +V+ +YG + P+D+ Sbjct: 872 NINP----DDMEKEEDFLIFLDSI----QNPKKDRIISEHEDEVRTVRQIYGKNEKPEDY 923 Query: 1008 LEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNE 1067 LE F+ ++ + + AL+ + P+ RK L EL+ D ++E+ L A+ + N Sbjct: 924 LENFEKYIRENQDKVEALKLLKENPKLFKRKDLKELRYILDENGYKETELNSAYGKVENV 983 Query: 1068 DIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVL 1127 +I A ++ +I++ G + EE++ RIK +W+ QL ++++ L+E L Sbjct: 984 NITADILSYIKKVLKGSTILDKEEKIQDIEKRIKRLKNWNPIQLKIIEKIISQLRENSYL 1043 Query: 1128 DDDVFKTGNFHRR-GGKAMLQRTFDDNLDTLLGKFSDYI 1165 ++ F +G F GG + + +D L ++ ++ I Sbjct: 1044 TEEDFSSGIFKDNFGGYNKINQKLEDKLADIVSIINEEI 1082 >UniRef50_A8YW16 Type I restriction modification system n=1 Tax=Lactobacillus helveticus DPC 4571 RepID=A8YW16_LACH4 Length = 1070 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 395/1185 (33%), Positives = 605/1185 (51%), Gaps = 140/1185 (11%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE-NQH 63 SNF +A +AE+ DP ++L FGE + + L + E NQ Sbjct: 2 SNFNTSDKNYHEYAKLASSAESLIFSDPRSSLTVFGTFGEQLTREIMHLDGLGDWELNQK 61 Query: 64 DLLRELGKIAF-VDDNILSVFHKLRRIGNQAVHEYH--NDLNDAQMCLRLGFRLAVWYYR 120 + ++ D +L ++RR N A H+ A + + + W+ Sbjct: 62 ARIDKMRYSGNGYPDAVLLALDEIRRKRNGATHDNQFIATKGAALKIDQKAYLVWKWFLE 121 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 + + VP +V P N+ Sbjct: 122 SFSLN---DVPEYVTPVDQRNIL------------------------------------- 141 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 ++ ALE ++ + + T + + + + L Sbjct: 142 -------------KSQADKIKALEEKIKQLQENRPQITISAEERTRRRKVNVQFAKKHPL 188 Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSK-GARPEPGVNKAIAEWPTGKDETGNQGFADY 299 +EEE+R LID+QLR AGW+AD+ L K P+ G + AIAEW + ADY Sbjct: 189 NEEETRQLIDSQLRNAGWEADTPRLNNWKHQTEPQKGHSMAIAEWVLPNGQ-----RADY 243 Query: 300 VLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 LF GL +VEAKR + D+ ++ + Y+K VP Sbjct: 244 ALFKGLDFYGIVEAKRWDQDIAGQMAQPKEYAK----------------------EVPFR 281 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 +K+PF Y+ NGR Y K KSGIW+ D R+ + + AL E+H PE+L Sbjct: 282 SDYHLIGQEMGDYKVPFIYAANGRPYLEQYKEKSGIWFWDARNPKENAYALEEFHTPEDL 341 Query: 420 -LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 L++ + N+ AD+ + R YQ DA++++E AI G++ ILLAMATGTGKT Sbjct: 342 ALKLTAKNKDEANKDLADDEDYPQFAARPYQLDAIQSLENAIKDGKKRILLAMATGTGKT 401 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP 538 RTAI++M+RL++ +R +RIL+LVDR SLG Q A +D +I + +SI+ +K L+DK P Sbjct: 402 RTAISLMYRLLKHKRARRILYLVDRNSLGRQTANAIKDNKIGTMSISSIYGLKELSDKVP 461 Query: 539 EDSTKIHVATVQSLVKRTLQSDE---PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 + STKI +ATVQ ++KR +D+ V +YD I+VDEAHRGY D+ ++ E + Sbjct: 462 DASTKIQIATVQGMIKRLFFNDDNSEKPSVGQYDFIIVDEAHRGYAEDRGLSDQEYENYD 521 Query: 596 QLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 Q +YVS YRR++D+FDA I +TATPAL T +IFG PVY Y+Y+ AV+DG+L+D D P+ Sbjct: 522 QEEYVSQYRRVVDYFDATAIGMTATPALQTTEIFGNPVYSYSYQQAVLDGYLVDHDAPVI 581 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVIN-DTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 I T+ A+EG++ KG +V+ + + I+ + L D+ +F++ DFN ++ P+FN+ VC+E Sbjct: 582 IQTKLAKEGIHFKKGAEVDVFNQDEKTIDKEKLPDNMNFDIKDFNHRVITPSFNKVVCDE 641 Query: 715 LT-NYLDPTGS--QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 L NYLDPT KTL+F T+ HADMVV+ L+ AFK ++ DAI KITG Sbjct: 642 LVRNYLDPTDRDGGKTLIFAATDEHADMVVDLLKKAFKDDGRPVDDDAIEKITGSI---- 697 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 R I F E PNIVVTVDLLTTGVD+P+I NIVFLR+V+SRILYEQM GRATRLC Sbjct: 698 RHPNQEIRNFKNEDYPNIVVTVDLLTTGVDVPAITNIVFLRRVQSRILYEQMLGRATRLC 757 Query: 832 PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSF 891 PE++K F+IFD V IY + V M+PVV P + ++ + D Sbjct: 758 PEIHKDKFRIFDAVGIYDAMNKVTNMKPVVQNPGHNVNYFLHH----------KEDYFEI 807 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGV-----NFNGFASRL 946 AE SH+ V D + ++++++RLD+ ++ + + +A +L Sbjct: 808 AEDSHQYQV--------------DMAGAVERKIKRLDDQGRNKFERLAEIPSVDEWAGKL 853 Query: 947 REKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD-YDTPQ 1005 + A+ + P F +L+++ + DEV+ YG + P+ Sbjct: 854 SKMS---KADFMKQWPKF-EQLDQVHPAKKQF-----ISNEQDEVIGTTRGYGQGNNKPE 904 Query: 1006 DFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETR 1065 D++++F+ V+ + N PALQ V RP+DLT L +++ ++ F+E+ L+ AWK T+ Sbjct: 905 DYIDSFNKFVKENVNVIPALQIVATRPKDLTFDELKDIKLKLEQNGFKENDLQSAWKTTK 964 Query: 1066 NEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKV 1125 +E A +I IR+AA G L + R+ +A+ ++ G DW+ Q WL R+ L Sbjct: 965 HEQTTADIISFIRQAASGSKLVDHDVRIHNAMQKVYGMADWNIMQKKWLKRIENQLLSST 1024 Query: 1126 VLDDD---VFKTGN-FHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 VL D F F R+GG +++ F D ++ ++ ++ Sbjct: 1025 VLGPDAEHAFDDNFYFKRQGGYKQIKKIFPKYADQIIYVLNENLY 1069 >UniRef50_C0XBA4 Type I restriction enzyme EcoKI subunit R n=6 Tax=Bacilli RepID=C0XBA4_9LACO Length = 1086 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 391/1179 (33%), Positives = 594/1179 (50%), Gaps = 130/1179 (11%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE-NQH 63 SNFE K +A +AE+ DP +++ F E + + L Q Sbjct: 20 SNFETTKKDYQQYAKLATSAESLIYSDPKSSVAIFGNFAEQLTREIMHLEGFGDWNLKQI 79 Query: 64 DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYH--NDLNDAQMCLRLGFRLAVWYYRL 121 D + EL A + +RRI N A H++ A + + ++ + Sbjct: 80 DRINELKYRADYPPVVTKYLDDIRRIRNLADHDHQFVVSKKQALEIDKKAHLIWSYFLEV 139 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 ++D + P N++ Sbjct: 140 YSQD---NPAKYQTPVDQANIF-------------------------------------- 158 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNA-ELAKQTEQERKAYHKEITDQAIKRTLNL 240 Q +AQ LEA L +N E++K+ ++R+ + L Sbjct: 159 --------QVQQAQIDQLKKELEAALNSQNPLEVSKEIREQRRKVSVNFA-----KKHQL 205 Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSK-GARPEPGVNKAIAEWPTGKDETGNQGFADY 299 +E E+R LID QL++AGW+AD++ L K P+ G N AIAEW + ADY Sbjct: 206 TEAETRQLIDKQLQEAGWEADTEKLNNWKFKTEPKKGHNMAIAEWVLPNGQ-----RADY 260 Query: 300 VLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 LF GL+ +VEAK+ + D+ ++ + YS+ VP Sbjct: 261 ALFKGLEFYGIVEAKKWDQDIAGQMAQPKEYSR----------------------EVPFR 298 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 + +K+PF Y+ NGR Y K KSGIW+ D R+ + + AL E+H PE+L Sbjct: 299 SDYLLVDNQMGDYKVPFIYTANGRPYLKQYKEKSGIWFWDARNPKENAYALEEFHHPEDL 358 Query: 420 -LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 L++ P + NQ D+ + R YQ +A++++E+AI G++ ILLAMATGTGKT Sbjct: 359 ALKLTAQNPDEANQDLVDDQDFPKFANRDYQVEAIKSIEEAIKDGKKRILLAMATGTGKT 418 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP 538 RTAIA+M+RL++ +R +RIL+LVDR SLG+Q A +D +I + ++I+ +K L DK P Sbjct: 419 RTAIALMYRLLKHKRARRILYLVDRNSLGQQTADAIKDNKIGNLSISNIYGVKELKDKLP 478 Query: 539 EDSTKIHVATVQSLVKRTLQSD---EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 + STKI +ATVQ ++KR +D E V +YD I+VDEAHRGY D+E ++ E +F Sbjct: 479 DASTKIQIATVQGMIKRLFYNDSNEEKPSVGQYDFIIVDEAHRGYAEDRELSDKEYKFYD 538 Query: 596 QLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 Q DYVS YRR++D+FDA I +TATPAL T IFG+PVY Y+Y+ AV+D +L+D D P Sbjct: 539 QNDYVSQYRRVVDYFDATAIGMTATPALQTTDIFGQPVYSYSYQQAVLDNYLVDHDAPTI 598 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVIN-DTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 I T+ +QEG++ KG + + E I + L D+ +FEV DFN+ ++ +FNR VC+ Sbjct: 599 IKTKLSQEGIHFKKGAGINLFDQESESIRSEKLPDNMNFEVKDFNKRVITESFNRVVCDY 658 Query: 715 LTNYLDPTGSQ---KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 L KTL+F T+AHADMVV L+ AFKK +E DAI KITG Sbjct: 659 LAQNCLNPNDPELGKTLIFAATDAHADMVVRLLKEAFKKAGNPVEDDAIEKITGSI---- 714 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 R I F E+ PNI VTVDLLTTG+D+P I N+VFLR+V+SRILYEQM GRATRLC Sbjct: 715 RHPNNEIKLFKNEKHPNIAVTVDLLTTGIDVPEITNLVFLRRVQSRILYEQMLGRATRLC 774 Query: 832 PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSF 891 P ++K+ F I+D V IY + V M+PVV ++ V + I Sbjct: 775 PGIHKSVFNIYDAVGIYDAMNKVTNMKPVVKNVTHDVHYFVKRKDEFGISDI-------- 826 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP 951 +E L A + R I + + ++ +D+ +D ++ F + + Sbjct: 827 SEQYQIDLAAAVDRKIKRMNDTKRKDFERLTEIASIDQWARDLIHLDRKEFLDQWKN--- 883 Query: 952 HWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDT-PQDFLEA 1010 I +L+KL+ + D DE + + YG+ ++ P+D++E+ Sbjct: 884 -------------IEQLDKLQGNTQK----QYISDAPDEYLGTERGYGEENSNPEDYIES 926 Query: 1011 FDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIA 1070 F+ V+ N PALQ V RP+DLT L +++ +++ F+E L+ AWK Sbjct: 927 FNKFVKEHVNTIPALQIVATRPKDLTYDELKKIKLELEKKGFKEHDLQSAWKSANQVQTT 986 Query: 1071 ARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDD 1130 A +I IR+AA+G L + R+ +A+ ++ G DW+ Q SWL ++ L VL + Sbjct: 987 ADIISFIRQAALGSKLVDHDVRIHNAMQKVYGMADWNMVQKSWLKKIENQLISSTVLGPN 1046 Query: 1131 ---VFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 F + F R+GG +++ F DN D ++ ++ ++ Sbjct: 1047 AETAFSSNFFKRQGGYKQMRKIFSDNADQIIYVLNENLY 1085 >UniRef50_A7I737 Type III restriction enzyme, res subunit n=5 Tax=cellular organisms RepID=A7I737_METB6 Length = 893 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 278/985 (28%), Positives = 429/985 (43%), Gaps = 154/985 (15%) Query: 239 NLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 E +R ID QLR AGW + G A+ E+PT G A Sbjct: 3 EEPEVVTRKKRIDPQLRAAGWTIAP----YQAGMDLSRYSRYALEEFPT------TNGPA 52 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY L + K +AV+EAK+ + L ++ RY++ Sbjct: 53 DYALCLDGKIVAVIEAKKLTLGPQNVLTQAERYAQGISGSPF------------------ 94 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 F++PF YSTNG IWY D+R++ N S + +H P+ Sbjct: 95 ----------NYSGFRVPFIYSTNG----------EIIWYHDLRNSLNRSSTVSHFHTPD 134 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 L E L + + Q + + + R YQ +A A+E+AI ++++L+AMATGTGK Sbjct: 135 ALAERLKDKFESSCQHLFEWENVHPMI-RPYQAEANAAIEQAIRDRKRQMLVAMATGTGK 193 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRIN-GDTFNSIFDIKGLTDK 536 T T + FRL++S KRILFLVDRR+L QA+ AF G F+ +++ Sbjct: 194 TYTMVNETFRLMESGVAKRILFLVDRRALAAQAVKAFASFEARPGLKFDKSYEVYSQRFF 253 Query: 537 FPEDS----------------------TKIHVATVQSLVKRTLQS-------DEP----- 562 + ++V T+Q + DEP Sbjct: 254 REDFEEEEKFDPKVLPSNYLLEPKPGLAFVYVCTIQRMTINLFGRNAVFGSSDEPIDEDA 313 Query: 563 ----MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALT 618 +P+ +D I+ DE HRGY ++ S +R+ LDHFDA+KI LT Sbjct: 314 EQMDIPIHAFDLIIADECHRGYTAAEQ---------------SVWRKTLDHFDAIKIGLT 358 Query: 619 ATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS- 677 ATPA HT+ F E VY+Y Y AV +GFL+D D + + + G++L GEQV I Sbjct: 359 ATPAAHTMAYFREIVYKYDYARAVREGFLVDYDA-VALDSNVRMNGIFLQAGEQVGVIDA 417 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-----KTLVFCV 732 G D +ED++ F+ + R + P NR + +E+ Y + + K L+F V Sbjct: 418 SSGAQSFDNMEDERQFDTTEVERSITSPDSNRKILSEIRKYAEEHEQRFGRFPKILIFAV 477 Query: 733 TN----AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPN 788 + +HAD +V+ R F K + KITG D+ + I F +P Sbjct: 478 NDLSHTSHADQLVDIARDVFGK-----GDSFVQKITGKVDRPLQH----IREFRNRPMPA 528 Query: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE-VNKTSFKIFDCVDI 847 +VVTVD+L+TGVDIP + IVFLR V+SRIL+EQM GR TR +K+ F +FDC Sbjct: 529 VVVTVDMLSTGVDIPDLEFIVFLRPVKSRILFEQMLGRGTRRGERCPDKSHFVVFDCFGG 588 Query: 848 YSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII 907 P+ E +++V I D D R +++ LV +LQRI Sbjct: 589 TLLDYFRQATGITAEPPEKETRSIVQVIKDV-------WDNRD-RDYNIRVLVRRLQRID 640 Query: 908 G-LATFNRD--RSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGF 964 ++ RD + ++R A G +F G + LR ++ P Sbjct: 641 KEMSGHARDLFAAYVPLGDLKRYASDLTHALGQDFTGTMTLLRNPA---CQDLLLHYPRP 697 Query: 965 IARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPA 1024 L N++ I D G P+D+L AF + V+ +P A Sbjct: 698 E---RSLLVAYENVDTVSSRYLIRDSA-------GHEYKPEDYLTAFSTFVKENPEHIEA 747 Query: 1025 LQAVINRPRDLTRKGLVELQEWFD--RQHFEESSLRKAWKETRNEDIAARLIGHIRRAAV 1082 ++ +++RP+D L EL++ R F +L+ A K N+ + +I ++ AA Sbjct: 748 IRILLDRPKDWGTDALSELKQKLAATRYRFTVENLQMAHKVRYNKAL-VDIISMVKHAAR 806 Query: 1083 -GDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKT-GNFHRR 1140 + L E+R+ ++ + EQ WLD++ + L + + D F + F Sbjct: 807 EEEPLCTAEQRIHRVFDKMSLATSLTPEQQQWLDKIREHLIANLSISKDDFDSIPIFANV 866 Query: 1141 GGKAMLQRTFDDNLDTLLGKFSDYI 1165 GG R FD L L+ ++++ I Sbjct: 867 GGWGKANRVFDGQLPDLIRQWNEAI 891 >UniRef50_B0JHV9 Type III restriction enzyme res subunit n=4 Tax=Chroococcales RepID=B0JHV9_MICAN Length = 1148 Score = 566 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 252/1286 (19%), Positives = 458/1286 (35%), Gaps = 268/1286 (20%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLG---LLLNIPPCEN 61 SNF FL+ Y A AE +P + R E L L P + Sbjct: 3 SNFSFLRDQFPTIYDHASQAEGLVFSNPRASCFYTRFVLEQMVCWLYENDPYLQPPRDNS 62 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVWYYR 120 L+ E + + + ++GN A H+ D+ + F L W R Sbjct: 63 LGALIHEQTFKDNLKPGLFGKIRTIHKVGNNAAHDTSPISERDSLHLIEELFHLTYWLVR 122 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 ++ +E+ ++ ++ +++ +++L + Sbjct: 123 YYGQN------------------GRELGDIRFDRQKIPPAAPPAPKQLQDLEKRLSQSDA 164 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 + E KQ++TEA+ A A +A LA+ +QAI + Sbjct: 165 LRQLAEAKQRQTEAELAAARAERDALLAQ---------------------NQAIADRHDY 203 Query: 241 SEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 +E ++R +LID L++AGW + + P + +GF DY Sbjct: 204 NEADTRRYLIDVLLQEAGWDTKAPNAT-----------EFEVWGMPIQQAGDTGRGFVDY 252 Query: 300 VLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ KP+A+VEAKR++ + N++ Y+ C + + + Sbjct: 253 VLWGDDGKPLALVEAKRSSKSPDSGQNQAKLYADCLEKDYNQR----------------- 295 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P + +NG E + D D + + + R E Sbjct: 296 ----------------PVIFYSNGYET----------YLWD--DLTYPPRPVLGFLRKTE 327 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKG-QQEILLAMATGTGK 477 L ++ ++ ++ ++ R YQ++A+R + + + ++ LL MATGTGK Sbjct: 328 LERLIFRRSHRKR--LSNTAINEDIVGRPYQKEAIRRITETFEEKCARKSLLVMATGTGK 385 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TRTAIA++ L + R+LFL DR +L +QA AF+ + + LT Sbjct: 386 TRTAIALVELLKSANWVNRVLFLADRNALLKQAYRAFQRHLPSVTVLH-------LTRSK 438 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEP---MPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 + +T Q+++ + D V +D ++VDEAHR Sbjct: 439 DVTGANVLFSTYQTMLNAIDRMDAEGRIFGVGYFDLVIVDEAHRSI-------------- 484 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGF 646 Y I D+FDA+ + LTATP T +IF G P + Y AV DG Sbjct: 485 -----YQKYGEIFDYFDALLVGLTATPRSEIDRDTYRIFQLPQGVPTFAYELNDAVRDGH 539 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTL-EDDQDFEVADFNRGLVIP 705 L+ + + + + GV S+ ER+ + + ++ E Q A FN L Sbjct: 540 LVPPKG-VTVPFKFLRTGVKYSELTPQERLDYEEKFRDEESGELPQAINAAAFNDWLFNI 598 Query: 706 AFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 L S KT++F + HA + + F YP + Sbjct: 599 DTVDQALELLMQRGLKVNSGDRLGKTIIFARNHRHAQCICDR----FNSNYPHYKGHFAK 654 Query: 762 KITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 I D Q+++ F++ + P + V+VD+L TGVD+P + N+VF + V SR+ + Sbjct: 655 II----DSHDNYAQSLLDDFSEANKEPILAVSVDMLDTGVDVPEVVNLVFFKPVFSRVKF 710 Query: 821 EQMKGRATRLCPEV-----NKTSFKIFDCVDIYSTLES---------VDTMRPVVVRPKV 866 QM GR TRLC ++ +KT F +FD + E +++ +V+ ++ Sbjct: 711 NQMIGRGTRLCQDLFGTGNHKTEFLVFDLCGNFEYFEQDIDETSQKIPESLTSRLVKHRL 770 Query: 867 ELQTLVNEITDSETYKITEADGRSFAEHSHE----------QLVAKLQRIIGLATFN--- 913 EL T + S T + E E + + Q +A + R L Sbjct: 771 ELATRLAPSKPSATPRAREQSSTYKVERAGDLYTSLLDALHQHIATMPRDNFLVRRRLPQ 830 Query: 914 ----------------------------RDRSETIDKQVRRLD------ELCQDAAGVNF 939 + D + D +L A ++ Sbjct: 831 VETFSQRQRWNNLSQEDAATIADCLAGLPNSLPNEDPLAKEFDLLCVKLQLAILKADRSY 890 Query: 940 NGFASRLREK---------------------GPHWSAEVFNKLPGFIA----RLEKLKTD 974 ++R+ + P + R+ L Sbjct: 891 ERLRDKVRDILGQLETKPDIPMIKGQLAFIREVQDESWWTGATPSMVEGIRVRVRDLVKF 950 Query: 975 INNLNDAPIFLDIDDEVVSVK----SLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVIN 1030 I+ + D DE+ V+ + + + + ++ +++ + + N Sbjct: 951 IDRQKQQIVITDFVDEMGEVQIVDIPTHQTGFSREQYRRKVEAYIRQHQDHLAIAKLRRN 1010 Query: 1031 RPRDLTRKGLVELQEWF--DRQHFEESSLRKAWKETRN-EDIAARLIGH----IRRAAVG 1083 P LT L L+E + + + +T++ + + ++G IR AA Sbjct: 1011 LP--LTETDLSALEEMLFSAAEIESRQRFEEVFGQTKSLKLLILEIVGLDPAGIRVAARQ 1068 Query: 1084 DALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGK 1143 A A R ++S+ Q+ +++ + L + V++ F Sbjct: 1069 AA--------KQAFARYLQGTNFSANQIRFIENIIDMLAKNGVINPGALYEPPFTDN-HP 1119 Query: 1144 AMLQRTF-DDNLD---TLLGKFSDYI 1165 L F D D ++L F++ + Sbjct: 1120 EGLDGMFNDGEADRIVSILRSFNESV 1145 >UniRef50_Q21ZK0 Type III restriction enzyme, res subunit n=17 Tax=cellular organisms RepID=Q21ZK0_RHOFD Length = 1138 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 252/1253 (20%), Positives = 436/1253 (34%), Gaps = 265/1253 (21%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLG---LLLNIPPCEN 61 SNF FL+ Y A AE D T+ R E L L +P ++ Sbjct: 2 SNFAFLQSEWSTLYGAAIKAEGMANTDARTSCFYARRTLELAVDWLYKHDPALRLPYQDH 61 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLN-DAQMCLRLGFRLAVWYYR 120 L+ E A D + + ++ +GN AVH L DA R F W R Sbjct: 62 LSALIHEPSFKATAGDAVFTKAKLIKDLGNLAVHSTRKILPVDAVTATRELFHFCYWLAR 121 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 + + T+ Q V + + +AE++A+ +KL L Sbjct: 122 TYGQ--RARPAPDLRFVPALIPSASATATVPDPAPQSVDQLQKLEAELQARDEKLTVLLS 179 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 A L+ + ++ Q A A + A T + Sbjct: 180 NKAALDDELKQLREQVAAAKKA----------------------------NTAQPDTHDY 211 Query: 241 SEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 E E+R ID L++AGWQ ++K P G+ DY Sbjct: 212 CETETRDKFIDLLLKEAGWQLNAKNFEIEVSGMPNNQ----------------GVGYVDY 255 Query: 300 VLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ +P+ +VEAKR D ++ Y+ C + + Sbjct: 256 VLWGDDGRPLGLVEAKRTRRDAKVGQQQAKLYADCLQAQYDQR----------------- 298 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P + +NG E+ W D D + + + + +E Sbjct: 299 ----------------PIIFYSNGYEH----------WIWD--DASYPPRPVQGFFKKQE 330 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIV-KGQQEILLAMATGTGK 477 L ++ + + AD ++ RYYQ AVR + + + Q++ LL MATG GK Sbjct: 331 LELLIQRRTNR--KKLADAVINDDIVNRYYQHRAVRRIGETFELENQRKALLVMATGGGK 388 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TR +A+ L + KRILFL DR +L +QA+ AF+ + N + + Sbjct: 389 TRVVVALSDVLTRCNWAKRILFLADRVALVKQAVNAFKTHLPDSSPVNLVSERH------ 442 Query: 538 PEDSTKIHVATVQSLVKRTLQSDE---PMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 ++ V+T +++ + + V +D I++DEAHR Sbjct: 443 --ADGRVFVSTYPTMMGLIDDAADGQRRFGVGHFDLIIIDEAHRSV-------------- 486 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGF 646 YR I D+FDA+ + LTATP +T +F G P Y AV +G+ Sbjct: 487 -----YQKYRAIFDYFDAMLVGLTATPKDEIDHNTYSLFDLESGVPTDVYGLDEAVAEGY 541 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVAD------FNR 700 L+ I + + +EG+ + +S + + D LE D+D V D N+ Sbjct: 542 LVPPRS-ISVPLKFQREGIKY------KDLSEEEKEQWDALEWDEDGNVPDAVDSAALNK 594 Query: 701 GLVIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLE 756 L V L + + KT++F NAHAD + + F YP + Sbjct: 595 WLFNTDTVDKVLENLMSQGEKVAGGDRLGKTIIFAKNNAHADFIADR----FNVNYPHYK 650 Query: 757 HDAIIKITGDADKDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVR 815 +T + Q++I F+ KE +P+I ++VD+L TG+D+P + N+VF + +R Sbjct: 651 GAFARVVTYKTEY----AQSLIDEFSMKEGMPHIAISVDMLDTGIDVPEVVNLVFFKIIR 706 Query: 816 SRILYEQMKGRATRLC-----PEVNKTSFKIFDCVDIYSTL---------ESVDTMRPVV 861 S+ + QM GR TRLC P NK F +FD ++ + + Sbjct: 707 SKTKFWQMIGRGTRLCLDLYGPGQNKQFFNVFDYCQNLEFFSLELPPDEGKNPVPLSTRL 766 Query: 862 VRPKVELQTLVNEITDSETYKITEADG-------------------RSFAEHSHEQLVAK 902 R ++E+ +++ + + T D + A + + V + Sbjct: 767 FRARLEMIAELDKRMAAGDHGATAQDAGSDDLTDGQLRGELAGFLHQQVAAMNLDNFVVR 826 Query: 903 LQRIIGLATFNRDRSETIDKQVRRLDELCQDAAG---VNFNGFASRLREKGPHWSAEVFN 959 +R RD ++D ++ + A R + Sbjct: 827 PRRKSVERFAKRDSWHSLDADAHTELSHEVADLPTALLDNDEEAKRFDMLVLRTQLSILK 886 Query: 960 KLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDY----------DTPQDFLE 1009 F E+++ + L + I ++V ++S+ D + + L Sbjct: 887 ASTDFATLRERMQAIASALEEQEAIPAIKAQMVLIQSVASDEWWEDVTVAMLEAARKKLR 946 Query: 1010 AFDSLVQRSPNAQP-----------------------ALQAVINRPRDLTRK-------- 1038 A L+++ L ++ R R Sbjct: 947 ALVKLIEKGKKNIVYTDFEDELGTGTTIMLPGVSTGMNLAKFKDKARQFLRAHESHLSLQ 1006 Query: 1039 -----------GLVELQEWFDRQHFEESSLRKAWKETRNEDI-AARLIGHIRRAAVGDAL 1086 L+EL+ + +A +++ I L+G R A Sbjct: 1007 RLRRNQPLTPSDLIELERMLVEAGGSTEVIEQAKEQSHGLGIFIRSLVGLDRETA----- 1061 Query: 1087 KPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHR 1139 A ++ ++ QL +++ + + L E V+D F Sbjct: 1062 -------KLAFSQFVVGTTATASQLEFINLIVEELTENGVMDPARLYDSPFTD 1107 >UniRef50_C7D879 Type I restriction enzyme, R protein n=1 Tax=Thalassiobium sp. R2A62 RepID=C7D879_9RHOB Length = 1131 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 267/1261 (21%), Positives = 442/1261 (35%), Gaps = 239/1261 (18%) Query: 7 FEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIPPCENQH 63 F FL A AE DP R+ E K L L P + Sbjct: 4 FAFLTTDFPDLKQHAEKAEKLALSDPRGACFWARLTLETAVKWLYRRDRSLRNPYDQTLA 63 Query: 64 DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDL--NDAQMCLRLGFRLAVWYYRL 121 L+ E A I + ++ GN+A H+ L DA +R F + W R Sbjct: 64 ALIAEPSLTALTGPAITTKAKYIKDQGNRAAHDSGKPLTAKDAAATVRELFHVCYWIART 123 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 + +LE+ + A T A+++ + + A N Sbjct: 124 YATGPKPDPA---------------LTFDLAKLEKSLTISASTVAQIQNIEADVKAANKR 168 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 A E E ++ L A+EA+LA+ AE+A +QAI + Sbjct: 169 AADAE----EARKSSEDGLKAVEAELAQLRAEVAATKN----------ANQAIPDDHDYG 214 Query: 242 EEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGNQGFADY 299 E E+R ID L +AGW D R E+P G GF DY Sbjct: 215 EAETRDAFIDLLLHEAGWPLDQTRDR----------------EFPVKGMPNQSGDGFVDY 258 Query: 300 VLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ KP+AV+EAKR D ++ Y+ C + + R Sbjct: 259 VLWGDDGKPLAVIEAKRTKKDSRTGQQQAKLYADCLEAQYGRR----------------- 301 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P ++TNG E+ W D D + + + + + E Sbjct: 302 ----------------PVMFTTNGYEH----------WLWD--DAQYPPRPVSGFLKKAE 333 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKG-QQEILLAMATGTGK 477 L + + D ++ R+YQ+ A+R V +A K Q++ LL MATG+GK Sbjct: 334 LELLHQRRGNV--KPLDDVKIDEDIAGRFYQQRAIRRVGEAFEKHAQRKALLVMATGSGK 391 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TRT IA++ +L+++ R KR+LFL DR +L +QA GAF+ + N + + K Sbjct: 392 TRTVIALIDQLMRANRVKRVLFLADRIALVKQAHGAFKTHLSATPSANLLE--RHDPKKN 449 Query: 538 PEDSTKIHVATVQSLV---KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 ++ ++T +++ ++ + +D IV+DEAHR Sbjct: 450 DHSGARVCMSTYPTMMGLIEQMKGGQKQFGPGHFDMIVIDEAHRSVYR------------ 497 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFGE----PVYRYTYRTAVIDGF 646 YR I ++FD + + LTATP T +FG P Y AV DGF Sbjct: 498 -------KYRAIFEYFDCLLVGLTATPREEIDKDTYSLFGLEKGIPTDSYDLDDAVSDGF 550 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 L+ I + + +EG+ + E+ ++ E + N+ L Sbjct: 551 LVPPKT-ISVPLKFQREGIAYDQLSDDEQEEWDALEWDEEGNVPDRVESGELNKWLFNED 609 Query: 707 FNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 V L KT++F N HA +++ F YP + + Sbjct: 610 TVDKVLEHLMRNGIKVDGGDRLGKTIIFAKGNKHAQFIIDR----FNANYPHYKGEFAKL 665 Query: 763 ITGDADKDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 I D Q++I F+ K++ P+I V+VD+L TG+D+P + N+VF + VRS+ + Sbjct: 666 I----DYSVTYTQSLIDDFSEKDKAPHIAVSVDMLDTGIDVPEVVNLVFFKVVRSKTKFW 721 Query: 822 QMKGRATRLC-----PEVNKTSFKIFDCVDIYSTL-ESVDTMRPVVVRP--------KVE 867 QM GR TRLC P+ +K F IFD E+ + V +P +VE Sbjct: 722 QMVGRGTRLCPNLFGPDEDKDEFVIFDFCQNLEFFSENPNFTDGVGTKPMGERLFATRVE 781 Query: 868 LQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRL 927 L E + + R E + L + R + + ++ Sbjct: 782 LLDAAQEDDNPHEDLVRSVKQRLQDEVNGMPLDNFIVRAKRRSVERFQKPDSWSDLTLEA 841 Query: 928 DELCQDAAGVNFNGFAS-----------------RLREKGPHWSA------------EVF 958 D + F RL + +S+ E Sbjct: 842 RMALTDDVAGLPSAFEDGALPAKQFDLLCLNAQLRLLQNDGGFSSLQQRIIRFASSLEEL 901 Query: 959 NKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQ-------DFLEAF 1011 +P LE + ++ + ++I + V + P+ DF++ Sbjct: 902 ENVPLVANELELILELQTDIFWEDVTVEILENVRRHLRGLAELIKPKERKIVITDFIDEI 961 Query: 1012 ------------------------DSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWF 1047 V+ + + + LT++ L EL Sbjct: 962 GESADIVMPDIGSGVDKARFKMKVRKFVEEHRDHITLNKV--KFGQQLTKQDLDELSAIL 1019 Query: 1048 DRQHFEESS-LRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDW 1106 + + L+ + LIG R AA A + Sbjct: 1020 VSEGVTDQETLKNLDDDGGLGPFLRSLIGLDRAAA------------KDAFGGFTSLHRL 1067 Query: 1107 SSEQLSWLDRLAQALKEKVVLDDDVFKTGNF---HRRGGKAMLQRTFDDNLDTLLGKFSD 1163 S++Q +LD + +L E +++ F F +G + R + ++ +D Sbjct: 1068 SADQTEFLDLIIDSLTEGGIVEPAAFYESPFTDIDDQGIAGVFNREQAKTIVEIVRTLND 1127 Query: 1164 Y 1164 Sbjct: 1128 S 1128 >UniRef50_A1BGJ2 Type III restriction enzyme, res subunit n=21 Tax=cellular organisms RepID=A1BGJ2_CHLPD Length = 931 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 243/1014 (23%), Positives = 422/1014 (41%), Gaps = 184/1014 (18%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E+ +R +ID QLR AGW K R + V+ IA T + ADYV Sbjct: 11 PEQIARDVIDVQLRLAGWAVQEKN-------RIDWQVSSGIA---VRHYPTQDGLEADYV 60 Query: 301 LFVGLKPIAVVEAKRN--NIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 LFV +P+ V+EAK+ + +S+ Y++ + Sbjct: 61 LFVDRRPVGVIEAKKEDEGHHLTVVEEQSFGYAESKLKHLNNDP---------------- 104 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 +PF Y + G R + D RD + S+ + +HRPE Sbjct: 105 ---------------LPFVYESTGTLTR----------FTDYRDPKPRSRPVFTFHRPET 139 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 E LG E + + D PG++ LR Q A+ +E + G+ L+ MATG+GKT Sbjct: 140 FREWLGQE-RSLRERLYDIPGLNPAALRECQTMAINNLESSFRDGRPRALIQMATGSGKT 198 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDT--FNSIFDIKGLTDK 536 AI ++RL++ KRILFLVD R+LGEQA F N D F +++++ L Sbjct: 199 FAAITFIYRLLKHADAKRILFLVDTRNLGEQAEQEFRAYTPNDDNRKFVELYNVQRLQSS 258 Query: 537 FPEDSTKIHVATVQSLVKRTLQSD--------------------------EPMPVARYDC 570 +++ + T+Q L + +P+ +D Sbjct: 259 SIAGDSQVCITTIQRLYSILKGEELDASLEEQNPAEKSWQPKEPVPVAYNAKVPIEFFDF 318 Query: 571 IVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFG 630 IV+DE HR + ++++LD+FDA I LTATP T F Sbjct: 319 IVIDECHRSI-------------------YNLWKQVLDYFDAFLIGLTATPDKRTFGFFN 359 Query: 631 E-PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP-QGEVINDTLE 688 E V Y++ AV DG + D I T + G + E +++ + LE Sbjct: 360 ENIVSEYSHERAVADGVNVGYDV-YTIETEITRNGSRIRAREFIDKREKLSRRKRWEQLE 418 Query: 689 DDQDFEVADFNRGLVIPAFNRAVCNELTNYL-----DPTGSQKTLVFCVTNAHADMVVEE 743 DD + + +R +V P+ R V + L T KTLVF T++HAD +++ Sbjct: 419 DDVVYTSSQLDRDVVNPSQIRNVIRAFRDALPVLFPGRTEVPKTLVFAKTDSHADDIIQI 478 Query: 744 LRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIP 803 +R F + + KIT A+ D + +++ RF E P I VTVD++ TG D+ Sbjct: 479 IREEFNE-----GNAFCNKITYKAEDDPK---SLLARFRNEYNPRIAVTVDMIATGTDVK 530 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEVN-----------KTSFKIFDCVDIYSTLE 852 + ++F+R VRS +EQMKGR TR + KT F I D V + +L+ Sbjct: 531 PLECLLFMRDVRSSNYFEQMKGRGTRTLSFDDLKKVTPSVTSAKTHFVIIDAVGVTKSLK 590 Query: 853 SVDTMRPVVVRPKVELQTLVNEITDSE----------------TYKITEADGRSFAEHSH 896 + RP+ +P L+ L+ +T +ITE + +F + + Sbjct: 591 T--DSRPLERKPTASLKELLEAVTFGAQDEDLYTSLANRLARLDKQITEQERAAFIDKTG 648 Query: 897 EQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP----H 952 + + ++ R + L +++ D +I+++ R ++ G + +G + E+ H Sbjct: 649 GKSINQVVREL-LDSWDPD---SINRKAREMNPEAVQEMGESPSGETTMFLEQAQQALLH 704 Query: 953 WSAEVFN-KLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAF 1011 + FN L FI + ++ I + + D+V + + + + F Sbjct: 705 EARLTFNGSLNEFIDTVRRVHEQIIDTVNL-------DQVTRSEWAAESGEKAAELIGEF 757 Query: 1012 DSLVQRSPNAQPALQAVINRP---RDLTRKGLVELQEWF--DRQHFEESSLRKAWKET-- 1064 + ++ + AL N+P R+LT + + E+ + DR + A+++ Sbjct: 758 KAYLEAHKDEITALGIFYNQPYRRRELTFRMIREVLDRLKADRPMLAPMRIWHAYEQIEK 817 Query: 1065 ------RNEDIAARLIGHIRR-AAVGDALKPFEERVDHALTRIKGEN------DWSSEQL 1111 +NE IA L+ IRR + L ++ VD + ++ EQ+ Sbjct: 818 VNGSSPKNELIA--LVALIRRVTGIDPVLTVYDRTVDANFKQWVFSRHSDAGDKFTEEQM 875 Query: 1112 SWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 +WL + + + + ++ D F GG+ + + F D +D ++ + ++ + Sbjct: 876 NWLRMIKEHIASSIHMEQDDLDLTPFDAYGGRGRMWQLFGDRMDGIIDELNEAL 929 >UniRef50_Q112D5 Type III restriction enzyme, res subunit n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q112D5_TRIEI Length = 1119 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 253/1264 (20%), Positives = 445/1264 (35%), Gaps = 255/1264 (20%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLG---LLLNIPPCEN 61 SNF+FLK + A AE + P + R E L L +P N Sbjct: 3 SNFDFLKPHYPKLHQTATQAETLINNAPRASCFYTRYTLEQAVIWLYENNPYLELPKTYN 62 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVWYYR 120 L+ E + +N+ + +IGN A H+ DA+ ++ + W R Sbjct: 63 LGALIHEQTFKDNLQNNLFPKLRIIHKIGNAAAHDPKPITSKDARYLIQELYHFLYWLTR 122 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 + D LP N T K L ++ +TQ + Q++ Sbjct: 123 YYSPDGKN------LPNLKFNPDLIPTSTTKSDLTLDKLQQLETQLSTAQEMQRIAE--- 173 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 + E QT A L +A+LA+ + +Q + Sbjct: 174 ----------QKEKQTTAELETAKAELAQLKQQ-----------------NQTKSDRHDY 206 Query: 241 SEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 +E ++R +L+D L++AGW + TG +G DY Sbjct: 207 NEADTRTYLLDILLKEAGWPIHLPESTEYQV---------------TGMPNETGKGKIDY 251 Query: 300 VLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 V + P+A+VEAKR +++ Y+ C F Sbjct: 252 VFWGDDGNPLAIVEAKRTRKSPQTGQHQAKLYADCLQAEFNHR----------------- 294 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P + +NG E+ W D D + + + + +E Sbjct: 295 ----------------PVIFYSNGYEH----------WIWD--DFNYPPRPIQGFLKKDE 326 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 L ++ +Q D ++ R YQ++A+ +++ Q++ LL MATGTGKT Sbjct: 327 LERLIFRRSHRQPLHTLDV--NPDIAGRCYQKEAICCIKEIFDNKQRKALLVMATGTGKT 384 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP 538 RTA++++ L ++ KR+LFL DR L QA G F NSI K Sbjct: 385 RTAVSIVELLERANWVKRVLFLADRNVLLTQAQGVF------NSNLNSITTANLTEKKQD 438 Query: 539 EDSTKIHVATVQSLVKR---TLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 ++ I +T ++ R T +D ++VDEAHR Sbjct: 439 AENATIVFSTYPTISNRINATDGDKRLFSPGYFDLVIVDEAHRSIYR------------- 485 Query: 596 QLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFL 647 YR+I +FDA+ + LTATP T IF G P + Y +A+ DG+L Sbjct: 486 ------KYRQIFQYFDALLLGLTATPRNEVDRDTYSIFDLEPGVPTFAYELDSAIKDGYL 539 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN-DTLEDDQDFEVADFNRGLVIPA 706 + +++ + + G+ S+ + E+ + + + +T E N L + Sbjct: 540 VPPSG-VEVPFKFMRAGIRYSELQPEEKTAYEERFADAETGEVPDKINATALNTWLFNIS 598 Query: 707 FNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 L KT++F + HA+ + E F YP + Sbjct: 599 TVDQALQLLMERGLKVEGGDRLGKTIIFARNHKHAEFISER----FNANYPHYKGQFAQI 654 Query: 763 ITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 I D + Q+++ F+ ++ P I V+VD+L TGVD+ + N+VF + V SRI + Sbjct: 655 I----DSQSSYSQSLLDDFSNADKQPIIAVSVDMLDTGVDVREVVNLVFFKPVYSRIKFN 710 Query: 822 QMKGRATRLCPEV-----NKTSFKIFDCVDIYSTLES---------VDTMRPVVVRPKVE 867 QM GR TRLCP + +KT F +FD +S E D++ +V+ ++E Sbjct: 711 QMIGRGTRLCPNLFAPGDDKTEFLVFDLCSNFSYFEQQIDEKNVKIPDSLTTKLVKSRLE 770 Query: 868 LQTLV------NEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETID 921 L LV N + D I +F H Q V + + E I Sbjct: 771 LSQLVPTGELKNNLLDELHQYINSMPKDNFLVRPHLQQVEEFSQRERWNELGESDQEIIG 830 Query: 922 KQVRRLDELCQDAAGVN--FNGFASRLREKGPHWSAEVFNKLPGFIA------------- 966 + + L + +N F+ +L+ S + Sbjct: 831 ESLASLPNGLPKESHLNKRFDLICVKLQLALLKQSTDFIRLRDNIRDICSQLAQKSNIPM 890 Query: 967 --------------------RLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD------ 1000 +E + +L + F+D ++ + + + Sbjct: 891 IAAKLQVIEEVQAEEWWRDITVEMVSILQQDLRELVKFIDSQEQKIMYVNFADEMGEVQN 950 Query: 1001 --------YDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWF----- 1047 +P + + ++ ++ + N + N P LT L L+E Sbjct: 951 VNVPTQTSGFSPLQYKKKVEAYIRSNENNVAVAKLKRNIP--LTDADLTALEEMLFNSEV 1008 Query: 1048 --DRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGEND 1105 DR+ F E + + +L+G R AA ++ Sbjct: 1009 IEDREIFAEVY----GQNISLKLFIRKLVGLDRNAA------------KELFSKYLNSK- 1051 Query: 1106 WSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTF-DDNLDTLLG---KF 1161 +++ Q+ +++ + L + V+ ++ F L F D D ++ + Sbjct: 1052 FNTSQIRFVENIIDYLTQNGVMSPELLYEPPFTDL-HTEGLDGIFADKEADNIIEILTEI 1110 Query: 1162 SDYI 1165 ++ + Sbjct: 1111 NESV 1114 >UniRef50_D0SUQ0 Predicted protein n=5 Tax=Moraxellaceae RepID=D0SUQ0_ACILW Length = 1147 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 263/1281 (20%), Positives = 473/1281 (36%), Gaps = 259/1281 (20%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIPPCEN 61 SNF+FL+ A AE P +L+ R E L L P + Sbjct: 2 SNFQFLEPEFSKLALTAKEAEKLVYISPQASLMFARNSLENLVFWLYQYDKKLTQPYDPS 61 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN---DLNDAQMCLRLGFRLAVWY 118 + L+ ++ + I +R +GN AVH + + F + VW+ Sbjct: 62 LYSLITDVKFKEIIPPYIWDKMDNIRMVGNSAVHGKKFKQLTTEETVKHISHLFLIYVWF 121 Query: 119 YRLVT-KDYDFPVPVFVLPERGENL-YHQEVLTLKQQLEQQVR----EKAQTQAEVEAQQ 172 R D V P+ N Q V K+QL+Q+V+ E A+ + ++ Sbjct: 122 ERTYGSPTKDRSQAVLFNPKLIPNADTTQPVTANKEQLQQEVKAFDKEFAEQHKALRERE 181 Query: 173 QKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQ 232 QKL+ L+ A L E LA +A+LA++ +Q +A ++ + Sbjct: 182 QKLLELS------------------ASLEEREKLLANIDADLAQKRQQVEQA---KLANS 220 Query: 233 AIKRTLNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDET 291 ++ + E+E+R L ID L +AGW+ GV TG T Sbjct: 221 KVQDHTDYKEDETRKLKIDLLLEEAGWEI---------------GVTAREEVPVTGMPST 265 Query: 292 GNQGFADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPD 350 +G DYVL+ P+A+VEAKR ++D ++ Y+ C + Sbjct: 266 SGKGSVDYVLYDANGLPLALVEAKRTSVDPEVGQQQAKLYADCLEQ-------------- 311 Query: 351 EVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKAL 410 Q + P + TNG R + DV+ + + Sbjct: 312 -------------------QTGQRPVIFYTNGYRTRI---------WNDVQG--GPPRLV 341 Query: 411 PEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 ++ EL ++ N P + + RYYQ A++A+ A + ++ LL Sbjct: 342 HGFYTQAELKRLIERRKN--NPDLGSFPINANIVERYYQTRAIKAMLAAFQRKERAGLLI 399 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDI 530 MATGTGKTRTAIA++ L+++ +++LFL DR SL QA AF+ + N + Sbjct: 400 MATGTGKTRTAIALVDVLMKANVVQKVLFLADRTSLVVQATNAFKANLPDSAPVNLV--- 456 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTLQSD----EPMPVARYDCIVVDEAHRGYILDKEQ 586 + + +++++T Q+++ + + +D I+VDEAHR Sbjct: 457 -----ESKTQNGRVYLSTYQTMMGLIDEMNADGTRKYGTGMFDLIIVDEAHRSV------ 505 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFG----EPVYRYTY 638 + I +FD++ + LTATP T +FG P Y Sbjct: 506 -------------YQKFGEIFKYFDSLLVGLTATPRDEVDRDTYALFGLESGVPTDYYDL 552 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADF 698 A+ DG+L+ + + +EGV + + E++ E+ D + + + Sbjct: 553 NQAIADGYLVPPKA-YSVPLKFMREGVKYDELSEEEKLHWD-ELDWDGGDAPDEVTASKI 610 Query: 699 NRGLVIPAFNRAVCNELTNYLDPTGSQ--------KTLVFCVTNAHADMVVEELRAAFKK 750 N+ L FN +++ +L G + KT++F V HA+ + E F K Sbjct: 611 NKEL----FNTGTVDKMLQHLMENGIKVEGGDMLGKTIIFAVNQNHANFIAER----FDK 662 Query: 751 KYPQLEHDAIIKITGDADKDARKVQTMITRFNKERL--PNIVVTVDLLTTGVDIPSICNI 808 YP + IT + Q++I F+K+ L P I ++VD+L TG+D+P + N+ Sbjct: 663 NYPHYDGKFARVITHST----KYAQSLIDSFSKKDLADPQIAISVDMLDTGIDVPEVVNL 718 Query: 809 VFLRKVRSRILYEQMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLE----------- 852 VF + VRS++ + QM GR TRLC PE++K F IFD + Sbjct: 719 VFFKAVRSKVKFTQMIGRGTRLCKDLFAPEMDKKEFYIFDYCSNFEYFNENPDGAPISTT 778 Query: 853 -----------------------SVDTMRPVVVRPKVELQTLVNEITDSETYKITEAD-- 887 + M+ V + LQT V + +E + Sbjct: 779 EPLGQRLFKARLNVLSLLNSPNYQTEEMKAVQQEMRQSLQTEVKSMNKDNFIVKSEIEHV 838 Query: 888 ---GRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFAS 944 A + + L R N +E ++ ++ + + A + N AS Sbjct: 839 EYFKTDAAWDNLDDLAIGTLREHISKLPNELETEPLEAKLFDMLCYNIELAVLEKNIKAS 898 Query: 945 RLREKGPHWSAEVFNK------------------------------LPGFIARLEKLKTD 974 +L A L R+ L Sbjct: 899 QLYANKVIEIASKLETKENIPVVAAQINLIQEIQTEAYWEGITVPILESMRKRIRGLVKL 958 Query: 975 INNLNDAPIFLDIDDEVVSVKSLY----GDYDTPQDFLEAFDSLVQRSPNAQPALQAVIN 1030 I ++ +DDE+ + + + +S ++ + + + Sbjct: 959 IEKSTSTIVYSMLDDEIGEATEVDIPVVSSGVNIAQYRKRVESFIKSNEDHITIAKL--K 1016 Query: 1031 RPRDLTRKGLVELQEWF--DRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKP 1088 R LT L EL+ + ++ + + + + + IR +L Sbjct: 1017 RGLALTPTDLNELERFVFDAQEVESKEKFEECFGTEKPLPL------FIR------SLVG 1064 Query: 1089 FEER-VDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQ 1147 + + V A ++ + ++ +Q+ +++ + + L + L+ F + + Sbjct: 1065 LDRKSVQAAFSKYLQGSTYNEKQIRFIEMVIEHLTIRGTLEASQLYEPPF-NQIHYEGID 1123 Query: 1148 RTF-DDNLDTL---LGKFSDY 1164 F D + D + + F++ Sbjct: 1124 GVFGDGDADNIFGVVEAFNES 1144 >UniRef50_UPI0001B4DA31 type III restriction enzyme, res subunit n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B4DA31 Length = 1196 Score = 554 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 284/1264 (22%), Positives = 466/1264 (36%), Gaps = 191/1264 (15%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP-PCE 60 SNF L + C+AE+ DP+ ++K R+FGE +HL LL + P Sbjct: 22 AGSSNFGHLLRHEPLLVTLGCSAESYVHSDPHAAMVKARLFGEVMTRHLVTLLGLTVPGS 81 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 Q D + L + + + + F +R GN+A HEY+ ++ +A + L FRL W +R Sbjct: 82 RQVDRINALVRADVLVPQVKAWFEAVRTTGNKAAHEYYANVREALQSVELCFRLGDWLHR 141 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQ------QK 174 + + D VF+ P E + +++LEQ E + ++E + Q Sbjct: 142 SLDQS-DTTHRVFLAPAPPSAPPAPESVADQRELEQLRTELDAYRRKLEEARLSYDGKQS 200 Query: 175 LVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHK------- 227 + + +A L L A+L+EK EL + R A Sbjct: 201 RLEREQAAREQAEAELARAEAERAALHDLIAELSEKITELTAPAMESRSAARPLDGASRR 260 Query: 228 --EITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWP 285 I +SE + R +D L KAGW + + G A+ E Sbjct: 261 DEFIAHAQKAARPPMSEAQVRAELDRILEKAGWVVQDDSAKNLF-----AGKGVAVREVS 315 Query: 286 TGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLE 345 T G ADY+L+V + + V+EAKR D+ A + ++ RY+ Sbjct: 316 TA------VGRADYLLYVDQRLVGVIEAKREGADLEAAMEQAARYATGLTRS-------- 361 Query: 346 HYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRN 405 R +PF Y +G R + + D Sbjct: 362 -------------------QQLSAWRASLPFRYVADGNTVR----------FHNALDPSP 392 Query: 406 MSKALPEWHRPEELLEMLGSEPQ-------KQNQWFADNPGMSELGLRYYQEDAVRAVEK 458 ++ + HRP+ + + + + LR QE A+ +E Sbjct: 393 RTREVFAVHRPDTIARWIEEAETDPTAPTLRARMRRLPQTFLDAKDLRPAQEKAINGLEL 452 Query: 459 AIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFE--D 516 ++ K L+ MATG GKT T ++ +RL++ KRILFLVDR +LG QA FE D Sbjct: 453 SLAKDDPRALIQMATGAGKTYTVVSESYRLLKHAGAKRILFLVDRNNLGSQAATEFENFD 512 Query: 517 TRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL------------------VKRTLQ 558 T +G F ++ ++ L S + V+TVQ L + R Sbjct: 513 TPDDGRKFTELYVVQRLAGDTVLGSAHVVVSTVQRLWLALTGRPVPSADSEDEALDRYDL 572 Query: 559 SDEPMPVAR--------YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF 610 DEP+ V +D IVVDE HR +R +L++F Sbjct: 573 IDEPVQVGYNPDLAPESFDLIVVDECHRSI-------------------YGKWRAVLEYF 613 Query: 611 DAVKIALTATPALHTVQIFGEP-VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSK 669 DA + LTATP T F + V Y Y AV D +D D +I T + G + Sbjct: 614 DAHLVGLTATPVKQTFGFFFQNLVSEYPYEQAVADRVNVDFDV-FRIRTELGENGGTIPA 672 Query: 670 GEQVERISPQGEVIND-TLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL--------- 719 V + LE+D +++ + R ++ + V +L Sbjct: 673 ETVVPMRERKTRRERYQELEEDLEWKASQLGRQVISKGQLKLVVETFREHLFTDIFPPVG 732 Query: 720 ------DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARK 773 T + KTL+F V + HAD +V+ +R F + D KIT A++ Sbjct: 733 EGEAQRSRTTAPKTLIFAVDDNHADEIVDMVRQVFGE-----CDDFCRKITH----AAKR 783 Query: 774 VQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE 833 +I F I VTVD++ TG DIP + + FLR V+S +EQMKGR +R Sbjct: 784 PAELIKAFRNSPELRIAVTVDMIATGTDIPPLECVFFLRDVKSWAYFEQMKGRGSRTVDP 843 Query: 834 VN----------KTSFKIFDCVDIYSTLESVDTMRPV--VVRPKVELQTLVNEITDSETY 881 K F I D V + + RP+ + K+ L+ L+ + Sbjct: 844 AEFQAVTPDAEVKERFVIVDAVGVTDS--PRVDARPLNRISERKIPLERLMAKSA----- 896 Query: 882 KITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNG 941 G + E L +L R+ T + + V+ + Sbjct: 897 ------GLAMTEDEVATLAGRLARLDQQLTPEEREEIEELAGQPLRKIVGGLVSSVDPDQ 950 Query: 942 FASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDA--PIFLDIDDEVVSVKSLYG 999 R G + IA +L+ + ++ A + ++ + V Sbjct: 951 QERARRIGGEKQVRQEMLDALKPIASNGELRDRLMSMRRAHDIVIDEVSVDQVKEVRGIT 1010 Query: 1000 DYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLT--RKGLVELQEWFDRQHF--EES 1055 + + ++ ++ + AL + RD + L +L +R F S Sbjct: 1011 ADELAIRRVSSWKQYIKDHQDEIAALNLAFSERRDPKEVYRRLRDLARKIERPPFQWTPS 1070 Query: 1056 SLRKAWKET-------RNEDIAARLIGHIR-RAAVGDALKPFEERVDHALTRIKGEND-- 1105 L A+ + R LIG +R + ++P+ V+ + + + Sbjct: 1071 RLYDAYVQLGKATRHPRGVAGVVDLIGLLRFELGLDQEVRPYRALVEERYAAWRAQQEQA 1130 Query: 1106 ---WSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFD-DNLDTLLGKF 1161 +S +Q+ WLDR+ + ++ D K F RGG R F D +L + Sbjct: 1131 GAVFSEDQVWWLDRMVDVIATDAAIEPDHLKDVPFIERGGVDGFLREFGADRGAEILDEL 1190 Query: 1162 SDYI 1165 + Sbjct: 1191 GREL 1194 >UniRef50_A6DQ75 Type I restriction-modification system R subunit (Endonuclease) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQ75_9BACT Length = 1138 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 256/1281 (19%), Positives = 447/1281 (34%), Gaps = 265/1281 (20%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLG----LLLNIPPCE 60 SNF F+K + Y + AE + D R+ E K L L+ + Sbjct: 2 SNFTFIKDIFPEVYELGVKAEEHLKQDKRACAFYCRLTLEVAVKWLFINDPNLIQPYKPK 61 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLN-DAQMCLRLGFRLAVWYY 119 + + G V ++ H ++GN A H + L F W Sbjct: 62 GLGEFVYAPGFQQLVPRDVNDGVHFAIKVGNHAAHSKGALREYELVTALEAVFSFVKWLA 121 Query: 120 RLVT---KDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLV 176 T K+ F + P EV LKQ+ +Q+ K + + E Q + Sbjct: 122 HYYTDAEKNIAFDLKNIPDPT-------AEVKGLKQEEAKQLALKFKDHFQKELDQARER 174 Query: 177 ALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR 236 E ++ +++ + L+A+LA ++T + Sbjct: 175 D--------EENLKQASLRSEQEIKNLKAELAALKTINEQETFE---------------S 211 Query: 237 TLNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG 295 + +EEE+R L ID L++ GW + + K + P G Sbjct: 212 DFDPNEEETRTLYIDLLLKEVGWNLEGANDKEYK-----------VTGMPKAGKNKSGIG 260 Query: 296 FADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 + DYVL+ KP+AVVEAKR D ++ Y+ C + + Sbjct: 261 YVDYVLWGDNGKPLAVVEAKRTMRDAKEGKQQAKLYADCLEKMHGQR------------- 307 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 P + TNG E + IW DT+ +++ ++ Sbjct: 308 --------------------PILFYTNGFE--------TFIWD----DTQYPDRSVYGFY 335 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 +EL ++ Q+ + + + R YQE A++ V + + ++ LL MATG Sbjct: 336 TKKELETLIERRYQRASIY--SLSVDKNIAGRPYQERAIKKVLETFEEKRRRALLVMATG 393 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQAL-GAFEDTRINGDTFNSIFDIKGL 533 +GKTRTA+A++ L + KRILFL DR++L QA+ +F N N L Sbjct: 394 SGKTRTAVALVKCLTEGNWCKRILFLADRKTLVGQAMRKSFRPYLPNLSMVN-------L 446 Query: 534 TDKFPEDSTKIHVATVQSLVKRTL----QSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 + + +++ +T Q+++ + V +D I++DE+HR Sbjct: 447 LKEEENNKSRMVFSTYQTMINKIDVLNEDGTRQYGVGHFDLIIIDESHRSI--------- 497 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTA 641 S Y I D+FDA + LTATP +T + F G+P Y+ + A Sbjct: 498 ----------YSKYGAIFDYFDANLVGLTATPLDQRDRNTFETFDLPDGQPTDVYSLKDA 547 Query: 642 VIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLED-DQDFEVADFNR 700 V D FL+ + + G+ S+ E+ + ++ + ++ + N+ Sbjct: 548 VDDKFLVMYK-LKKPDLKFPSRGIKYSELPPEEQAHYEETFTDELTDVIPEEVKGEAVNK 606 Query: 701 GLVIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLE 756 L R V ++L KT+VFC + HA+ VVE F + YP Sbjct: 607 WLFNEDTVRKVLDKLMTEGIKVEGGDKLGKTIVFCRSRQHAEYVVE----VFDRMYPAYS 662 Query: 757 HDAIIKITGDADKDARKVQTMITRFNKER-LPNIVVTVDLLTTGVDIPSICNIVFLRKVR 815 + Q I F K + +P I V+VD++ TG+D+P + N+VF + V+ Sbjct: 663 GHFCQVV----HNKCYDPQQTILDFEKPQLMPQIAVSVDMMDTGIDVPEVVNLVFFKSVK 718 Query: 816 SRILYEQMKGRATRLC-----PEVNKTSFKIFDCVDIYSTL----ESVDTMRP------- 859 S+ + QM GR TR C P +K F+IFD + E +T P Sbjct: 719 SKSKFWQMIGRGTRTCENLFGPGKDKKDFRIFDYCGNFDFFKVNAEGFETGAPESLMQKM 778 Query: 860 -------------VVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRI 906 + E Q L E +++ D H + + L Sbjct: 779 FRCRSRLAYYLQTAEFQSVPETQALWEESISWIHEQLSGIDCTGALVRKHRRSIELLSTK 838 Query: 907 IGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREK---------------GP 951 L N + T+ K + L Q + L G Sbjct: 839 EELRCLNESKLSTLIKDLSSLPMPGQREEEMKKRFDVRMLNLMIAIVEASKQKQPLIKGV 898 Query: 952 HWSAEVFNKLPGF------IARLEKL-----------------------KTDINNLNDAP 982 +AE + G + L ++ + + +D Sbjct: 899 MKTAEDLRQKAGIPSVKAKLELLNRVVQKEFWKDVSLDTVDYVRKELRELIKLLDKDDES 958 Query: 983 IFLDIDD---------EVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPR 1033 + D E YGD +++ E P+ + N+P Sbjct: 959 QKIYHTDLKDTITNPDETWEEGENYGDEY--ENYKENLRRYFLAHPDLAAVWKLQNNKP- 1015 Query: 1034 DLTRKGLVELQEWF------DRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALK 1087 L + L EL+ DR+ FEE+ K L +R +L Sbjct: 1016 -LGNEDLKELEGVVYSSVVSDRERFEENCEGK------------SLQAFVR------SLI 1056 Query: 1088 PFEER-VDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHR-RGGKAM 1145 +E+ V A + + ++++Q+ + + + + + F GG Sbjct: 1057 GMDEKAVSEAFSDFLDTHAFNAKQIDCIKIIMDHYIKNGFMSKAFLQEQPFKGFSGGFIG 1116 Query: 1146 LQRTFDD-NLDTLLGKFSDYI 1165 L + L +++ + ++ + Sbjct: 1117 LYGQDNALKLVSVINELNEGV 1137 >UniRef50_Q0W4T5 Type I restriction modification system, restriction subunit n=2 Tax=cellular organisms RepID=Q0W4T5_UNCMA Length = 922 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 229/1003 (22%), Positives = 405/1003 (40%), Gaps = 167/1003 (16%) Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 E E+R ID L AGW+ G A+ E+ T + G ADY Sbjct: 8 EPEREARKNIDRLLEAAGWKVQDH-----DKLDLGAGPGIAVREF------TLDNGEADY 56 Query: 300 VLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 +LFV K + V+EAK + ++ +Y + Sbjct: 57 LLFVDRKAVGVIEAKPEGTTLSGVAEQTQKYLNGIPKCIGQVKNP--------------- 101 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 PF Y + G E ++RD+RD S+++ +HRPE + Sbjct: 102 ---------------PFAYESTGVET----------YFRDMRDPDARSRSIFAFHRPETI 136 Query: 420 LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTR 479 E L S+ + + P + GLR Q +A+ +EK+ + + L+ MATG+GKT Sbjct: 137 REWL-SDEETLRSRLKNLPPLRTEGLRDCQTEAITKLEKSFAESRPRALIQMATGSGKTF 195 Query: 480 TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTR--INGDTFNSIFDIKGLTDKF 537 T+++ ++RLI+ K+ILFLVDR +LG Q L F+ +G F +++++ LT Sbjct: 196 TSVSFIYRLIKHAHAKKILFLVDRSNLGRQTLREFQQYTTPDDGRKFTDLYNVQHLTSNS 255 Query: 538 PEDSTKIHVATVQSLVK---------------------------RTLQSDEPMPVARYDC 570 + +K+ + T+Q L + + + +P+ +D Sbjct: 256 IDPVSKVCITTIQRLYSMLRGEAEFEEGNEERSGFDTGVTDERPKEVAYNPNIPIEEFDF 315 Query: 571 IVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFG 630 IVVDE HR +R+ L +FDA + LTATP+ T+ F Sbjct: 316 IVVDECHRSIYHV-------------------WRQALLYFDAFIVGLTATPSKQTIGFFN 356 Query: 631 EP-VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP-QGEVINDTLE 688 + V Y + AV DG + + +I T ++G + GE V++ S + ++ L+ Sbjct: 357 KNLVMEYNHERAVADGVNVGYEV-YRIKTEITEKGSKIEAGEYVDKRSKLTRQKRHEMLD 415 Query: 689 DDQDFEVADFNRGLVIPAFNRAVCNELTNYL------DPTGSQKTLVFCVTNAHADMVVE 742 ++ ++ +R +V P R V + L KTLVF ++HA+ +V Sbjct: 416 EELVYDPNRLDRDVVAPDQIRTVIRTFRDRLFTEIFPGRKEVPKTLVFAKDDSHAEDIVN 475 Query: 743 ELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDI 802 +R F ++ KIT K + ++ F P I VTVD+++TG DI Sbjct: 476 IIREEFAA-----GNEFCKKITYRT--TGEKPEELLQSFRNSYYPRIAVTVDMISTGTDI 528 Query: 803 PSICNIVFLRKVRSRILYEQMKGRATRL----------CPEVNKTSFKIFDCVDIYSTLE 852 + ++F+R VRS + +EQMKGR TR +KT F I D V + Sbjct: 529 KPLECLIFMRNVRSGVYFEQMKGRGTRTISPTDLKAVSSDAHHKTHFVIVDAVGVCER-- 586 Query: 853 SVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATF 912 RP+ + V + L+ I + + T S ++ K ++ I + Sbjct: 587 DKTDSRPLERKKSVAFKDLLYSIAVGKRDEDTITSLISRLTRLDREIGEKERKEIENVSG 646 Query: 913 NRDRSETIDKQVRRLDELCQDAAGVNF-------NGFASRLREKGPHWSAEVFNKLPGFI 965 I+K V +D Q+A + +E + + F+K P Sbjct: 647 GVQLKTIINKLVDAIDADSQEARAKQMFKTDSPTREQLEKAKEALTDEACKPFDK-PALR 705 Query: 966 ARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPAL 1025 L ++KT + D D ++S G + + + +F ++ + + AL Sbjct: 706 DTLVEVKTRSEQIIDEGSI----DNLISAGFDDGAKEKARAVVTSFKEFIEANKDELTAL 761 Query: 1026 QAVINRP---RDLTRKGLVEL--------------QEWFDRQHFEESSLRKAWKETRNED 1068 Q + ++P R L K + +L + W + E S ++ A + Sbjct: 762 QIIYSQPYAKRHLAFKDIKDLAEAIQKPPRNLTPERVWQAYEILERSKVKGAGAQK---- 817 Query: 1069 IAARLIGHIR-RAAVGDALKPFEERVDHALTRIKGEND-----WSSEQLSWLDRLAQALK 1122 + +I +R D L+PF E VD + E + +++EQ+ WL+ + + + Sbjct: 818 LLTNIISLVRFTEGQSDVLEPFPETVDSRFRKWVEEQEKLGRKFTAEQMEWLNMIKEHIG 877 Query: 1123 EKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 + + + + F ++GG R F L+ +L + ++ + Sbjct: 878 ASLEISVEDLELTPFDQKGGPVRAYRVFGSELNWMLEELNEVL 920 >UniRef50_D1XTB5 Type III restriction protein res subunit n=2 Tax=Streptomyces RepID=D1XTB5_9ACTO Length = 1153 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 230/1064 (21%), Positives = 395/1064 (37%), Gaps = 181/1064 (17%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIPPCEN 61 SNF FL+ + A AE DP + R E + L +P + Sbjct: 2 SNFGFLQAEWPGLHREAVHAERLAYADPRASAFYARRVLELAVTWMFEADDALKLPYQND 61 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVWYYR 120 L+ E + I + +RR GN AVH DA + F + W R Sbjct: 62 LAALIAEPTLVKVAGPAIRAKMDVIRRQGNAAVHRKTPITPKDAVRTVAELFHVLYWMAR 121 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 T+D + + + + + + +VR QAE+ Q +K + Sbjct: 122 TYTRDQA---------QLPVSTLAFDTALIPRPVPAEVR--VAKQAELRVQAEKYAEQDT 170 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 +A K Q+ +A+ A ++A A A+ T + Sbjct: 171 ALAAERKKNQDLDAEIADLRAQVKAAKAANEAQ---------------------PDTHDY 209 Query: 241 SEEESRFLI-DAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 +E+E+R LI D L++AGW D R + PT +G +G DY Sbjct: 210 NEDETRKLIIDLLLKEAGWALDLPRDR-----------EYPVTGLPTSAAPSG-KGKVDY 257 Query: 300 VLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ KP+AVVEAKR D ++ Y+ + F + Sbjct: 258 VLWDDDGKPLAVVEAKRTTRDPKQGKYQATLYADALEAQFKQR----------------- 300 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P + TNG + D+ + + ++ +E Sbjct: 301 ----------------PVIFYTNGYRT---------YLFDDLN---YPPREVQGFYTKDE 332 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ-QEILLAMATGTGK 477 L ++ ++N A P ++ R+YQ A+R + + K ++ LL MATG+GK Sbjct: 333 LRLLVQRRASRRN--LAKMPINEQIAGRHYQSRAIRRIADSFEKDSLRQALLVMATGSGK 390 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TRT I++ ++++ KRILFL DR++L +QA F+ + N + + Sbjct: 391 TRTVISLSDLMMRANWAKRILFLADRKALVKQATNEFKKHLPGANPVNLLEE-------- 442 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEP----MPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 + +++ V+T +++ Q+D +D IV+DEAHR Sbjct: 443 KDPHSRVFVSTYPTMMNLIDQTDADGRRIFGPGFFDLIVIDEAHRSI------------- 489 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDG 645 Y I D+FD++ + LTATP +T + F G P Y+ AV +G Sbjct: 490 ------YQRYGAIFDYFDSLLVGLTATPKDEVDRNTYRRFELEDGVPTDVYSLDEAVAEG 543 Query: 646 FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIP 705 +L+ + + + + G+ + ++ N+ + + + N+ L Sbjct: 544 YLVAPRA-VDVPLKFQRGGIKYDDLSEEDKEKWDETEWNEDGDVPDEITTEELNKYLFNA 602 Query: 706 AFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 V L + KT+VF N HA+ + E F K YP L+ Sbjct: 603 DTVDKVLQTLMTHGLKVDGGDKLGKTIVFAANNNHAEFIAER----FDKNYPHLKGAFAQ 658 Query: 762 KITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 IT Q++I +F+ LP I ++VD+L TG+D+P + N+VF + VRS+ + Sbjct: 659 VIT----YRKEYAQSLIDKFSDAAELPQIAISVDMLDTGIDVPEVVNLVFFKLVRSKTKF 714 Query: 821 EQMKGRATRLCPEV-----NKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEI 875 QM GR TRL P++ +K F +FD V P +L I Sbjct: 715 WQMIGRGTRLAPDLFGPNRSKDGFLVFDLCQNIEFFNQNLMRAEGKVAP-----SLSQRI 769 Query: 876 TDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAA 935 + + D S +H ++A G + + R + + + Sbjct: 770 FERRADLLLALDDSSARDHQAAAVIATRPESDGTVSDSGLRWDLATRLHDEVTA------ 823 Query: 936 GVNFNGFASRLREKGPHWSAEV-------FNKLPGFIARLEKLKTDINNLNDAPIFLDID 988 +N F R + A+ + I L L T + +DA Sbjct: 824 -MNPENFLVRPHREQVENFADFDAWLEFTPDAHGEVIDHLAGLPTAFRDKDDAGEEAKRF 882 Query: 989 DEV-----VSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 D + ++V + + +D ++ S + PA++A Sbjct: 883 DLLALRLQLAVANGDPGFTRLRDQVQEIASTLLDQLT-IPAIKA 925 >UniRef50_Q1GLF8 Type I restriction-modification system restriction subunit n=7 Tax=root RepID=Q1GLF8_SILST Length = 1130 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 253/1232 (20%), Positives = 422/1232 (34%), Gaps = 235/1232 (19%) Query: 7 FEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIPPCENQH 63 F FL A A AE+ DP R+ E K + + P + Sbjct: 4 FVFLTADFPDLLAHAKKAESAALSDPRGACFWARLTLETAIKWIYRNDPSMRSPYQDTLA 63 Query: 64 DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHND--LNDAQMCLRLGFRLAVWYYRL 121 L+ E I++ ++ GN+A H+ DA +R F + W R Sbjct: 64 ALIAEPSLGQLTGPAIVTKARFIKDHGNRAAHDSGKPIKPQDAAAVVRELFHVCYWMART 123 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 KD + +LE+ + A T A+++A ++K A Sbjct: 124 YAKDAKPD---------------SSLQFDASKLEKTLTISASTVAQIQALKEKHDAHAKA 168 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 + E ++ LEA+LA+ AE+ + + + A++ + + Sbjct: 169 LKDAEAAA----LASEEGRKRLEAELAQVRAEIKEIRQ----------ANTAVQDDHDYN 214 Query: 242 EEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGNQGFADY 299 E +R ID L +AGW D + R E+P G +G DY Sbjct: 215 EAATRDAFIDLLLNEAGWPLDQERDR----------------EFPVSGMPNDKGEGLVDY 258 Query: 300 VLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ KP+A+VEAKR D ++ Y+ C + + R Sbjct: 259 VLWGNDAKPLALVEAKRTMKDSRIGQQQAKLYADCLETMYGRR----------------- 301 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P ++TNG E+ W D D + + + + +E Sbjct: 302 ----------------PVIFTTNGYEH----------WLWD--DQMYPPRRVSGFLKRDE 333 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ-QEILLAMATGTGK 477 L+ + +++ + R+YQ+ A+R V +A + + ++ LL MATG+GK Sbjct: 334 LVLLHQRRGTRKS--LDGVSVDQGIAGRFYQQRAIRRVGEAFERDRQRKALLVMATGSGK 391 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TRT IA++ +L+++ +R+LFL DR +L +QA AF+ + N + + + Sbjct: 392 TRTVIALIDQLMRANWVRRVLFLADRVALVKQAHNAFKTHLPTAASANLLKN--HDPARN 449 Query: 538 PEDSTKIHVATVQSL---VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 +I ++T ++ + ++ +D IV+DEAHR Sbjct: 450 DHSGARICLSTYPTMLGLIDDVKGGEKQFGPGHFDLIVIDEAHRSVYR------------ 497 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGF 646 YR I D+FD + + LTATP T +F G P Y AV D + Sbjct: 498 -------KYRAIFDYFDGLLVGLTATPREEIDRDTYSLFELERGIPTDSYDLEDAVADEY 550 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 L+ I + + ++G+ E+ +D E AD NR L Sbjct: 551 LVPPRS-ISVPLKFQRDGIDYDSLSDEEKAEWDAIEWDDEGAVPDRVEAADLNRWLFNKD 609 Query: 707 FNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 V L KT++F + HA +VE F YP Sbjct: 610 TVDKVLEHLMTNGIKVAGGDRLGKTIIFAKNSDHAKFIVER----FDANYPHYMGQFARL 665 Query: 763 ITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 I D Q++I F++ E P+I V+VD+L TG+D+P + N+VF + VRS+ + Sbjct: 666 I----DYSVTYAQSLIDDFSEAEEAPHIAVSVDMLDTGIDVPEVVNLVFFKIVRSKTKFW 721 Query: 822 QMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLE------SVDTMRPVVVRPKVELQT 870 QM GR TR C P +K F IFD T RP+ R V Sbjct: 722 QMVGRGTRTCEDLFGPGQDKQEFIIFDFCQNLEFFNENPKITDSPTARPIGERLFVSRVE 781 Query: 871 LVNEITDSETYKITEADGRSFAEH-----SHEQLVAK-----LQRIIGLATFNRDRSETI 920 L++ + ++ AD + + E + + ++R ++ + Sbjct: 782 LISALDEAGNESPLAADIKDRLHQEVLGMNLENFIVRQARRPVERFQSAEAWDTLDLDAR 841 Query: 921 DKQVRRLDELCQD-------------------------------------------AAGV 937 + + L + Sbjct: 842 LALIEEVAGLPTAFEDGRLAAKQFDLLVLNAQLLLLRGDAAFANLQRRIVSFASALESLS 901 Query: 938 NFNGFASRLREKGPHWSAEVFNKLP-----GFIARLEKLKTDINNLNDAPIFLDIDDEVV 992 N L + E + + R L I + D +D + Sbjct: 902 NVPAVTQELELVLAIQTDEFWQDINVEILEDVRRRFRNLAELIQPKERKNVITDFEDSIG 961 Query: 993 SVKSLY----GDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFD 1048 + ++ G F ++ + ALQ + R LT L EL+ Sbjct: 962 TSTTIDLPEVGSGVDKVRFKTKTRKFIEAHSDHI-ALQKI-RRGEQLTPADLQELERMLI 1019 Query: 1049 RQHFEESS-LRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWS 1107 + + L E L G R AA + N S Sbjct: 1020 DEGVADHDVLDGLQNEGGLGVFLRSLTGLDRAAA------------KALFSDFAAANQLS 1067 Query: 1108 SEQLSWLDRLAQALKEKVVLDDDVFKTGNFHR 1139 + Q ++D + +L E VLD F F Sbjct: 1068 ANQTEFIDLIINSLCENGVLDPKTFYESPFTD 1099 >UniRef50_UPI000050FFCE type III restriction enzyme, res subunit n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FFCE Length = 1135 Score = 538 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 259/1232 (21%), Positives = 439/1232 (35%), Gaps = 233/1232 (18%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNI--PPCENQ 62 +NFEF++ + + AE+ DP + I R E HL +LN+ P ++ Sbjct: 2 TNFEFIRAEWPTIFTDSARAESYVFSDPRSACIYSRRSIERLVIHLYTILNLPTPYKDDL 61 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLND-AQMCLRLGFRLAVWYYRL 121 + + A I LR++GN AVH D A L + + +W Sbjct: 62 SARINDPKFKAATGIGIHQKLTFLRKLGNNAVHNDTPVPVDAAIRALSELYLVIIWAAFH 121 Query: 122 VTKDYDFPVP----VFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 ++ D + +R L E+ L + +QQ E A Q ++ Sbjct: 122 HSRIPDSVPAGTQFDPKIAKRAAPLSPAELAKLVDKFKQQDEELAAAQKQL--------- 172 Query: 178 LNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRT 237 E A A++AA A + EL +Q + + + Q K Sbjct: 173 ------------AEISADVDAQIAAATADKDSQIEELQRQVAAAQSSKVTTLDSQEWK-- 218 Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 E+ +R LID L AGW D +R + + G G+ Sbjct: 219 ----EDRTRTDLIDVDLELAGWNLDEPNVREFRIS---------------GLPTPSGVGY 259 Query: 297 ADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADYVL+ KP+AVVEAKR + V A ++ Y+ + F R Sbjct: 260 ADYVLWGTDGKPLAVVEAKRTSASVEAGRRQAEMYADGIEKAFGRR-------------- 305 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 P + +NG ++ +W + + ++ Sbjct: 306 -------------------PVIFFSNGDRHQ--------LWDD---TGGYPPREIHGFYT 335 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 +EL ++ + P S++ R YQ + V + Q+E LL MATG+ Sbjct: 336 RDELELLIQRRTTRVR--LEGRPVNSDIVNRGYQRQIIAQVGRDFDDRQREALLVMATGS 393 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKTRTAIA++ +L+++ KR+LFL DRR+L +QA G F N T N + Sbjct: 394 GKTRTAIALVDQLMKANWVKRVLFLADRRALVKQAAGEFTAHLPNVTTVNLLDTTDK--- 450 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEP-MPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 S ++ V+T +++ + D+ +D +++DEAHR Sbjct: 451 --DNASGRVFVSTYPTMMGLIDKGDDTVFGPGYFDLVIIDEAHRSVYR------------ 496 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGF 646 Y+ I D FD++ + LTATP +T +F G P YT A+ D + Sbjct: 497 -------KYKAIFDWFDSLLLGLTATPKDEIDRNTFNLFHIENGVPTGAYTLEQAIRDKY 549 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 L + I + T+ +EG++ + ++ R D D D N L Sbjct: 550 LTEPR-EINLGTKFLEEGIHYADLDEEARTDWDELEWEDGTIPD-DVHATALNNYLFNAD 607 Query: 707 FNRAVCNELTN--YLDPTGSQ--KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 V ++L + +G + K+++F HAD + + F YP Sbjct: 608 TVDIVIDKLMSDGLKIESGDKLGKSIIFAQNQRHADFIQQR----FDIHYPAHAGKFARV 663 Query: 763 ITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 IT D Q +I +F + P I ++VD+L TG+DIP I N+V +KVRS+ + Sbjct: 664 ITHQTDS----AQDLIEKFKDPNQHPQIAISVDMLDTGIDIPEILNLVLFKKVRSKSKFW 719 Query: 822 QMKGRATRLCPEV-----NKTSFKIFDCVDIYSTL-ESVDTMRPVVVRP----------- 864 QM GR TRL P++ +KT F +FD + E D P V P Sbjct: 720 QMIGRGTRLSPDIFGPGHDKTEFYVFDFCANFEYFNEQFDKAEPRQVLPLNHRILRTRAE 779 Query: 865 -------KVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRD-- 915 + +L L + ++ + + + +H + V+ + D Sbjct: 780 LLAAISSQSDLSGLRSGLSGELARFVRGIPAENRSVRAHRRWVSDFATDSSWTQADPDTT 839 Query: 916 ----------RSETIDK--QVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPG 963 S ID + +R D + A +G + AEV Sbjct: 840 AEAVDHLGGLPSSAIDASEEAKRFDLIVLTAQLSALDGVFVTPASRTVQDIAEVLLTKQS 899 Query: 964 F------IARLEK-LKTDINNLNDAPIFLDIDDEVVS-VKSLYGDYDTP--QDFLEAFDS 1013 + LE+ ++ + P D+ V V+ G P DF++ Sbjct: 900 IPMVASQVELLEEIVRPEWWQDVTLPELEDVRIRVRELVRFAKGKRQNPIYTDFVDELRE 959 Query: 1014 ------------------------LVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDR 1049 + N + + R + LT L L+ Sbjct: 960 NESSSLPAHEPGLNIDRLRDRARAYLNEHKNHLAVQKLM--RNQQLTEADLEALKSILVD 1017 Query: 1050 QHFEESSLRKAWKETRN--EDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWS 1107 + A ET + L+G R+A + ++ +S Sbjct: 1018 GGVGDELSIHAAAETADGLGLFVRSLVGLERQAVM------------ELFGEYLDDSRFS 1065 Query: 1108 SEQLSWLDRLAQALKEKVVLDDDVFKTGNFHR 1139 + Q+ ++ ++ L +++ + Sbjct: 1066 AIQIEFVRQIIDELSTNGIVERGRLFEEPYTD 1097 >UniRef50_B7RYA9 Type III restriction enzyme, res subunit family n=2 Tax=Gammaproteobacteria RepID=B7RYA9_9GAMM Length = 1165 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 223/1028 (21%), Positives = 389/1028 (37%), Gaps = 166/1028 (16%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP--PC 59 M NFE L+ + AE DDP + LIK+R F E + ++P P Sbjct: 7 MTSQNFEMLRPHWPDLANLGGHAEKYVFDDPQSALIKLRCFAEKLVGIIYREWSLPCYPN 66 Query: 60 ENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYY 119 + D L + VD I+ H +R+ GN+A HE + L+ LA W Sbjct: 67 DKFIDRLENNAFASVVDTAIIDKLHAIRKEGNKAAHEGKFGKGSSLWLLKESHILASWLL 126 Query: 120 RLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALN 179 + K + FV P+ E L ++ LK++L + Q AE+EA QQ Sbjct: 127 LSMKKGDKADLKPFVEPQPAEKLSAKKAEALKKRLTEHQARFDQAMAELEASQQAEQEAQ 186 Query: 180 GYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLN 239 A +L +Q ++ A HK+ ++ K L Sbjct: 187 AEAA-----------------------------KLKQQLDKATAAQHKQ-ANEVAKNLLE 216 Query: 240 LSEEES-RFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 L+E ++ R LID +L GW D + ++ + E V+ G+ G+ D Sbjct: 217 LNEAQTRRRLIDTELHSRGWDIDLVNGKDTEEVKFEVEVD--------GQPTRTGIGYCD 268 Query: 299 YVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 YVL+ KP+AVVEAKR + ++ Y+ + + Sbjct: 269 YVLYDDNGKPLAVVEAKRTRENAEKGRQQAKLYADALEKAHGQR---------------- 312 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 P + TNG + I+ D + + L ++ + Sbjct: 313 -----------------PVIFYTNGHD----------IYIWD-DAQKATPRKLYSFYGKD 344 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 L M+ +++ P +++ R YQ +++ V + + ++ LL ATGTGK Sbjct: 345 SLQYMVRQRATRKD--LTGTPIDTDIAGRMYQIESITRVCERFIANHRKALLVQATGTGK 402 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TR AIA+ R+I + KR+LFL DR+ L +QA A+ + + I G + K Sbjct: 403 TRVAIALTKRMIDAGWAKRVLFLCDRKELRKQAGKAYNEF------LSEPLYIVGKSKKA 456 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 + +++++T +++ E +D I+ DE+HR Sbjct: 457 DRATAQLYISTYPGMMRIM----EDFDPGYFDLIIADESHRSI----------------- 495 Query: 598 DYVSAYRRILDHFDAVKIALTATP----ALHTVQIFG----EPVYRYTYRTAVIDGFLID 649 + + I ++DA+++ LTATP + T Q+FG P Y AV DG L+ Sbjct: 496 --YNVFGDIFKYYDALQLGLTATPVEMISRSTSQLFGCEYKMPTANYPLEQAVADGHLVP 553 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 T+ +EG+ +G + ++ DF A ++ + NR Sbjct: 554 FKVVSHT-TQFLREGI---QGHSLSDEQIAELEERGIDPNELDFNAASLDKAVYNKDTNR 609 Query: 710 AVCNELTNYLDPTGSQKT----LVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITG 765 A+ L +T ++F HAD++ E F + YP+ + I Sbjct: 610 AILRNLMECGQRLADGQTLGKSIIFARNIQHADLMAE----LFAEMYPEYGGNFCRVIHS 665 Query: 766 DADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 ++ + K+ I ++VD+L TG+D+P N+VF + V+S++ + QM G Sbjct: 666 KFERAEELIDDFKATGGKDSEITIAISVDMLDTGIDVPEALNLVFAKPVKSKVKFWQMIG 725 Query: 826 RATRLCPEV---------NKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEIT 876 R TRL P + +K+ F IFD + E + ++L + Sbjct: 726 RGTRLRPNLYGPATDGSDDKSKFLIFDHWANFEYFEME-----PEEEEPRQSKSLSQNLF 780 Query: 877 DSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSET-----IDKQVRRLDELC 931 +S EA R + + +V Q I L N + QV L + Sbjct: 781 ESRLVFAEEALKRGEMDAFGKMVVLIKQDIDSLDDKNIAIKDNWTLKQQLSQVDVLHQFA 840 Query: 932 QDAAGVNFNGF--ASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDD 989 + F+ + R A F+ L+ + + + + + + Sbjct: 841 PVTKSLLFDQMAPLMQWRNIKGQSEALKFD--------LDVVNAQYARMAEPELLEPVKE 892 Query: 990 EVVSVKSL 997 +++ Sbjct: 893 QILGKVRN 900 >UniRef50_B4RYU7 Type I site-specific restriction-modification system, R (Restriction) subunit and related helicase n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RYU7_ALTMD Length = 1141 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 250/1246 (20%), Positives = 441/1246 (35%), Gaps = 249/1246 (19%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIP-PCE 60 SNFEFLK + A AE +P ++ R E T K + L P Sbjct: 2 SNFEFLK-EWPQLHEHAVIAEQQVNAEPRSSCFYSRYTLERTVKWMFEFDSWLQEPKYDN 60 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVH-EYHNDLNDAQMCLRLGFRLAVWYY 119 + + L+ + + N+ ++R GN AVH E ++ L+ W+Y Sbjct: 61 SLNTLINDPDFKRSLGSNVFPKIKAVQRAGNNAVHSERKVSAAESIQTLKELHHFLYWFY 120 Query: 120 RLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALN 179 R T + + L+ + Q++ + V ++L AL Sbjct: 121 RTYTSNK----------PPTDQLFDTAKIPNTVQVDANL---------VMNSAKQLKALQ 161 Query: 180 GYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLN 239 ++ + K +E + Q A AL+ +L A++A+ +Q +Q +K + N Sbjct: 162 KQLSERDEKHKERQDQLLAENEALKKELEAHKAKVAEDKKQ----------NQQVKDSHN 211 Query: 240 LSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 +E E+R +ID L++AGW K G G+ D Sbjct: 212 YNEAETRKFIIDQYLKEAGWDVTKPNTVEFKV---------------LGMPNNKGVGYVD 256 Query: 299 YVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 VL+ KP+AVVE+KR +D ++ Y+ C + + + Sbjct: 257 NVLWGSDGKPLAVVESKRTTVDATQGRQQAVLYADCLEKAYGQR---------------- 300 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 P Y TNG E + D DT+ +A+ +H + Sbjct: 301 -----------------PLIYYTNGYEIH----------FWD--DTQQPPRAVQGFHNRD 331 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 E+ ++ + R YQ A+++V + Q+ LL MATGTGK Sbjct: 332 EMQRIIDRRALRVPLPGVAINSDIAGKDRPYQTLAIQSVCERFTLNQRRSLLVMATGTGK 391 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TRT IA++ L+++ K +LFL DR +L QA F + LT Sbjct: 392 TRTTIALVDVLMRAGWVKNVLFLADRNALVNQAKKEFSKLLPKTSP-------EILTSAT 444 Query: 538 PEDSTKIHVATVQSLVK--RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 +++++T +++ D + +D ++VDEAHR Sbjct: 445 DTLRGRLYLSTYNTMMNLLSVDARDRLFGIGHFDLVIVDEAHRSI--------------- 489 Query: 596 QLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFL 647 YR I ++FDA+ + LTATP +T IF G+P Y Y A+ D L Sbjct: 490 ----YKKYRYIFEYFDALLLGLTATPKSDIDKNTYDIFDQPDGDPTYAYELEEAIADKKL 545 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAF 707 + + + +EG+ S + + + + L + + ++ N+ L F Sbjct: 546 VPPK-DVAVDLGFIREGIKYS---DLSKDEKEEWESKEELVERDEVLPSEVNKFL----F 597 Query: 708 NRAVCNELTNYLDPTGSQ--------KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDA 759 N+ ++ L G + KT++F N HA+ VV+ + A YP+ + Sbjct: 598 NKPTVDKALEVLFERGIRVAGGERLGKTIIFAANNKHAEFVVDRINA----NYPKYKGKL 653 Query: 760 IIKITGDADKDARKVQTMITRFNKERLP-------NIVVTVDLLTTGVDIPSICNIVFLR 812 IT + ++I F E+ P +I V+VD+L TGVD+P + N++F + Sbjct: 654 ARVIT----YKEKYADSLIEEFKGEKKPADPNCPLSIAVSVDMLDTGVDVPEVVNLMFFK 709 Query: 813 KVRSRILYEQMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVE 867 ++S++ + QM GR TRLC P+ +K FK+FDC + E + Sbjct: 710 VIKSKVKFLQMLGRGTRLCESLFGPDDDKVFFKVFDCCKNFEYFEMQPEGAKDSGSKTLS 769 Query: 868 LQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETID--KQVR 925 + S+ K E G AE + R+ G+ N ++ + Sbjct: 770 QAIFEKRLILSQHLKSNEQFGTDGAELQRSLVENLQNRVAGMNLDNFIVRPRRKVVEKYQ 829 Query: 926 RLDELCQDAAGVNFNGFASRLREKGPH-WSAEVFNKLPGFIARLEK--LKTDINNLNDAP 982 + + Q N + + E K R + L + + Sbjct: 830 KPETW-QHLTDENVGEIQKHISDLPTEAEPIEPREKDEELALRFDHMLLTMQLAMVEKTG 888 Query: 983 IFLDIDDEVVSVKSLYGDYDTPQDFLEAFD--SLVQRSPNAQPALQAVINRPRDLTRKGL 1040 I D++V++ + + E + +Q S N L + TRK L Sbjct: 889 ISDYYRDKLVNIAAKLESKTSVPAIAEEVEWLEYIQ-SANFWTDLTL---DELEQTRKRL 944 Query: 1041 VELQEWFDRQH-------------------------------FEESSLRKAWKE------ 1063 L + D++ + KE Sbjct: 945 RLLMRFMDKEGTGYVYTNFQDELLSVNENEGIYVPTSGNELQLYRKRVESYIKENQDNLT 1004 Query: 1064 ---------TRNEDIAARLIGHIRRAAVGDALKPFEERVD-------------------- 1094 D+ + + + +GD L ++E + Sbjct: 1005 ITRLRKNLPITRLDLDELDVKLMAVSGIGD-LTQYQETIHPDKSLGVFIRELVGMDRGAA 1063 Query: 1095 -HALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHR 1139 A E ++++QL +++ + L + V+ F Sbjct: 1064 KEAFADYLDEAKFNAQQLRFINTIIDYLTQNGVMSAKQLAQPPFSD 1109 >UniRef50_A0KWT8 Type III restriction enzyme, res subunit n=7 Tax=Gammaproteobacteria RepID=A0KWT8_SHESA Length = 1138 Score = 531 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 215/935 (22%), Positives = 364/935 (38%), Gaps = 158/935 (16%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP--P 58 M NFEFL+ AE DP + LIK+R + E + LN+P P Sbjct: 1 MKQSMNFEFLRKNWPELADFGAYAEEYAFSDPQSALIKLRSYSEYIVNFIYQKLNLPCLP 60 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 + H+ L + +L FH ++ +GN+A HE NDA ++ +L W+ Sbjct: 61 KASFHEKLVGEDFVQLASSAVLDKFHLIKTLGNKAAHENKGASNDALFAVKQSHQLGTWF 120 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 Y VP F+ + LK++LEQ Q AE+E Sbjct: 121 YCSYHNLQACTVPAFIE----LSEEFLTTSKLKKKLEQSDALYQQAMAELE--------- 167 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL 238 + RL + A K A K T Q + +L Sbjct: 168 ------------------RQRLVNEQMFAAAKQATAVKDTPVFE---AFATNSQLLSSSL 206 Query: 239 NLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 N +E E+R +LID +LR GW+ + + G + PT G+ Sbjct: 207 NFNEAETRKYLIDMELRDIGWEVSKDN-----KSTDQVGQEVEVKHQPTN----TGIGYV 257 Query: 298 DYVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DYVL+ P+AVVEAK+ + D ++ Y+ + + + Sbjct: 258 DYVLWDDDGLPLAVVEAKKTSKDARIGKKQAKDYADALEKHYGQR--------------- 302 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 P + TNG + I+ D + + ++ Sbjct: 303 ------------------PVIFYTNGHD----------IYIWDDAQG-YPPRKIYGFYSK 333 Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 L + L + + + D +E+ R YQ + + V + +++ L+ ATGTG Sbjct: 334 SSL-QHLVKFQRIEKKKLTDVAIDTEVAGRRYQLETISRVHETFELKRRKALVVQATGTG 392 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK 536 KTR +IA+ L+ ++ KRILFL DR+ L +QA AF + G +DK Sbjct: 393 KTRVSIALAKSLMDAKWVKRILFLCDRKELRKQADKAFVQF------LGVKPYVVGKSDK 446 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 +D+ ++ +AT ++ E V +D I+ DE+HR Sbjct: 447 KYKDTARVFIATYPGMMGI----YEDFDVGYFDLIIADESHRSI---------------- 486 Query: 597 LDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFG----EPVYRYTYRTAVIDGFLI 648 + + + +FD +++ LTATP + T +F EP Y A+ +G L+ Sbjct: 487 ---YNVFGNLFKYFDCLQVGLTATPVEMVSRSTCNLFDCDYKEPTANYPLEKAIGEGHLV 543 Query: 649 DQDPPIQIITRNAQEGV--YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 + T+ +EG+ EQ+ + QGE N+ +FE A+ + ++ Sbjct: 544 PFEIVTMT-TKFMREGMNQRSLSDEQIAELEAQGEDPNEF-----EFESAEIDNAVLNKD 597 Query: 707 FNRAVCNELTNY----LDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 NR + L D K+++F HA + L+ F + YP+L Sbjct: 598 TNRKILRNLMENGIKDKDNQLIGKSIIFARKINHARL----LKELFDEMYPELSQGFCEV 653 Query: 763 ITGDADKDARKVQTMI----TRFNKERLPN---IVVTVDLLTTGVDIPSICNIVFLRKVR 815 I + + + + LP+ + ++VD+L TG+D+PS+ N+VF + V+ Sbjct: 654 IHSEEPRAEALIDQFKITEEEKAKDSSLPDPITLAISVDMLDTGIDVPSVVNLVFAKPVK 713 Query: 816 SRILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLE-SVDTMRPVVVRPKVELQ 869 S++ + QM GR TRLC + +KT F IFD + + E + + + P + + + Sbjct: 714 SKVKFWQMIGRGTRLCEDLFGKGKHKTRFLIFDHWNNFDYFEFNYEEVEPSNTKSLAQKR 773 Query: 870 TLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQ 904 + S K E + S +Q + L Sbjct: 774 FELRLQLASAALKKLELNAFSQTIKLLQQDINALN 808 >UniRef50_C0VSE4 Type I site-specific deoxyribonuclease n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSE4_9CORY Length = 1195 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 255/1189 (21%), Positives = 431/1189 (36%), Gaps = 175/1189 (14%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQH- 63 +NF F A E N +P + R E +H+ L I + Sbjct: 12 TNFAFAVDAFGELGVDAIRVERNALGNPAMATMFARPILERLVRHIWRLRKIGDFHGRKL 71 Query: 64 -DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVWYYRL 121 DLL + A+ + I + H +R GN A H A + F + W Sbjct: 72 IDLLTDPRFEAYTTEQIRAKLHAIRLAGNDASHGARRITPEQAVRVTQQLFDVLAWAVAT 131 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLE--QQVREKAQTQAEVEAQQQKLVALN 179 + + + E + E A E+E + ++L Sbjct: 132 HSPHPELQPTTPFNNDYLRPPAGTPAPKRASDAEVKKLAEELAGKDRELEGKDKELAEQA 191 Query: 180 GYIAILEGKQQ---ETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR 236 ++ E ++Q E A+ +AR A +A+ AE+ A L K+ E+E +E+ Q + Sbjct: 192 LLLSKAEQEKQDQAEAHARERARFEA-KAKSAEEQAALTKKLEEEIAKLREELVAQQARL 250 Query: 237 TLN--------LSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTG 287 + +SE ++R LID QL +AG+ S L V + P Sbjct: 251 AVPQKQVLPPTVSEAQTRKDLIDPQLERAGFAFGSSIL-----------VEYPVTGMPLS 299 Query: 288 KDETGNQGFADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEH 346 + QG+ DYVL + +A+VEAK++ + A + ++ Y+ C + Sbjct: 300 AENHTGQGYVDYVLVGPDGRKLALVEAKKSAQSMNAGVEQARLYADCLE----------- 348 Query: 347 YSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNM 406 + P + TNG + S Sbjct: 349 ----------------------HETGLRPVIFLTNGYHIQLVDDAAS----LPGTGRGYG 382 Query: 407 SKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIV-KGQQ 465 ++ + + ++L M+ + A P +++ R YQ + +R V +A +G++ Sbjct: 383 AREVEGFPTADQLRTMIARRAGRL--PLASEPVDAKIAGRDYQLEMIRNVTEAFDSEGRR 440 Query: 466 EILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFN 525 LL MATGTGKTR A+A+ L +Q R+LFL DR++L QA AF+ + N Sbjct: 441 RALLVMATGTGKTRVAMALAKLLRGAQWVGRVLFLADRKALVAQACDAFKISYPECAPVN 500 Query: 526 SIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS---DEPMPVARYDCIVVDEAHRGYIL 582 + D ++ +++ +T Q+++ + +D I++DEAHR Sbjct: 501 LLEDA--------DEVGEVYFSTYQTMMGLISDDGTSEAKFRPFDFDLIIIDEAHRSIYY 552 Query: 583 DKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFG----EPVY 634 +RRIL++FD+ + LTATP T +F EP Sbjct: 553 -------------------RFRRILEYFDSYVVGLTATPKADIHHDTFALFHIDGREPTG 593 Query: 635 RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQD-- 692 Y+ A+ DG+L+ P Q+ ++L G + +SP+ +V D + D Sbjct: 594 NYSLEAAIKDGYLVPPVP-------FKQDSLFLRAGVSYDDLSPEQKVAWDNQDWGTDED 646 Query: 693 ---------FEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQK---TLVFCVTNAHADMV 740 + NR L R V L + T++F T HAD++ Sbjct: 647 GDALPPPDGVSPGEINRILYNRDTIRKVVGNLIECGHKVDGDRLGETIIFARTQHHADLI 706 Query: 741 VEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTG 799 +EE+ F P D IT R + I RF K + I ++VD+L TG Sbjct: 707 LEEINKHF----PAFGGDGAAVITHST----RYAEAAIKRFKKIDGDLRIAISVDMLDTG 758 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFDCVDIYSTLESV 854 +D+P + N+VF + V S + QM GR TRLCP + +K +F IFD Sbjct: 759 IDVPEVVNLVFFKPVYSPTKFWQMVGRGTRLCPNLFGPGRDKENFYIFDYCGNVEMFSGK 818 Query: 855 DTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNR 914 P R + L + E+D S + L KL ++ Sbjct: 819 PVTDPAGTRQATLSERLFVARAQL-IRLLDESDSLSAHSRLRDGLATKLHELV------- 870 Query: 915 DRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTD 974 + V + L AE LP EK Sbjct: 871 --CSVPEGHVLVRPSDRPVIHAFYTDSAWEHLSADDVTQLAEHVAHLPFTATVKEKPSAK 928 Query: 975 INNLNDAPIFLDIDDEVVSVKSLYGDYDT----PQDFLEAFDSLVQRSPNAQPALQ---- 1026 +L + L + +E S G+ D L + VQ+ + Sbjct: 929 QIDLLVLQLQLALLEED---ASFAGNKQKLSTTAGDLLAVDLAPVQKHAAVLEQVADPAW 985 Query: 1027 --AVINRPRDLTRKGLVELQEWFDRQ--HFEESSLRKAWKETRNEDI----AARLIGHIR 1078 + D+ R + EL E+ + +F + + E ++ A+ IG R Sbjct: 986 WDGITLEDLDIARVVIRELAEFIPKGERNFVDIDFEDTFGELEQTELSPVHASTFIGESR 1045 Query: 1079 -RAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVV 1126 A + + L + A+ +++ ++E + L+ L E+ V Sbjct: 1046 AEARLKEFLASHAQ--STAMQKLRTARPLTAEDMKALEMLLAEAGEETV 1092 >UniRef50_Q0AZK4 Type I restriction-modification system R subunit (Endonuclease) n=4 Tax=Firmicutes RepID=Q0AZK4_SYNWW Length = 1115 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 248/1264 (19%), Positives = 448/1264 (35%), Gaps = 262/1264 (20%) Query: 4 KSNFEFLKGVNDF-TYAIACA-AENNYPDDPNTTLIKMRMFGEATAKHLGLLLN---IPP 58 +NF+FLKG ++ +A AC AE P + R E K + N +P Sbjct: 2 SANFDFLKGQAEYTLFATACIEAERVLATSPAMAAMGSRKACELAVKWVYSADNTITMPY 61 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVW 117 +N L+ E +D+ S + ++GN AVH +DA + L F W Sbjct: 62 RDNLQSLIHEPSFRFVLDNQTWSKLLYIIKLGNLAVHTEKAISRSDAVLSLSFLFEFIQW 121 Query: 118 YYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 +Y E++ +A++ A+Q L Sbjct: 122 IDYCYGFNY--------------------------------VERSFDEAKIPAEQVILDV 149 Query: 178 LNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRT 237 Q++TE + AL A++ + +L E ++ H Sbjct: 150 TKLKEIDSLIDQKDTE------IEALRAKIEAMSPQLTADKEHHKEERHFT--------P 195 Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 L++SE +R ID L+ GW + G +G+ Sbjct: 196 LDISELLTRKKYIDVDLKLLGWVFGDDVQEEVELY---------------GMPNPEGKGY 240 Query: 297 ADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADYVL+ P+AV+EAKR + D ++ Y+ C + R Sbjct: 241 ADYVLYGKDGLPLAVIEAKRTSKDPKIGTQQAKLYADCLEKMTGRR-------------- 286 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 P ++TNG E + D+ + + Sbjct: 287 -------------------PMMFTTNGFET---------YLWDDLTSP---QRKVSGVFS 315 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 +L +++ ++ + + P ++ RYYQ++A+RAV + I G ++ LL MATGT Sbjct: 316 KADLEKLMNRRNER--KPLDEIPIDDKITDRYYQKEAIRAVCENIETGHRKSLLVMATGT 373 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKTRTA ++ L + LFL DR +L QA F+ + N + + + Sbjct: 374 GKTRTASSLTDVLSRGGYITNTLFLADRTALVRQAKNDFKTNLPDMSLCNLLINKE---- 429 Query: 536 KFPEDSTKIHVATVQSLVK-----RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 + + +I +T +++ + A +D I+VDEAHR Sbjct: 430 ---DKTARIVFSTYPTMLNAIDSAKNENGQRLFTPAHFDLIIVDEAHRSIF--------- 477 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAV 642 YR I ++FD++ I LTATP +T F G P Y Y Y TAV Sbjct: 478 ----------KKYRAIFEYFDSMLIGLTATPKQEVDRNTYDFFEMESGVPTYAYAYETAV 527 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 ++ I++ TR +EG+ + + ++ + + ++ E N + Sbjct: 528 DKDHVLVPYHNIEVRTRFLEEGITYDELSEEDKARYEEDFTDEDGEMPDFIPSPAVNEFI 587 Query: 703 VIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 V +L KT++F HA+ +VE F K YPQ Sbjct: 588 FNQCTVDMVLEDLMTKGIKVAGGDRLGKTIIFAQNKKHAEYIVER----FNKLYPQYHGS 643 Query: 759 AIIKITGDADKDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 ++ D + VQT+I F E+ P+I V+VD+L TG+D+P + N+VF +++RS+ Sbjct: 644 FAKRVVCDDNY----VQTIIDDFKIAEKEPHIAVSVDMLDTGIDVPELVNLVFFKRIRSK 699 Query: 818 ILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTL---------ESVDTMRPVVVR 863 I + QM GR TRLC +KT F IFD + + ++ + Sbjct: 700 IKFWQMIGRGTRLCKNLFGDGQDKTHFLIFDYLGNFEFFRTNKDGVKGNETQSISEAIFA 759 Query: 864 PKVEL--------------QTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIG- 908 +V L Q + + D+ +I + + Q + K + Sbjct: 760 KRVRLIHHLQQSAFMEEPYQAIRTNLIDTVVQQINTLNTELISVKLQLQYIEKYKNKDAF 819 Query: 909 --LATFNRD----------RSETIDKQVRRLDELCQDAAGVNFNG--------------- 941 L+ ++ + +D+ +R D G Sbjct: 820 VFLSDLDKHDLIVHLAPLVYMDDMDEFAKRFDNFMYGLMIAQIEGAPHFNKGKKQLINVC 879 Query: 942 --FASRLREKGPHWSAEVFNKL-------PGFIARLEKLKTDI--------NNLNDAPIF 984 + R+ E+ N + I EK + ++ + +PI+ Sbjct: 880 SSLSQRITIPQIKEKIELINNVGTDDFWQNSDILDFEKARIELRSLIKFIVDEGGVSPIY 939 Query: 985 LDIDDEVVSVKSLYG--DYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVE 1042 +++D V+ VK G T +D+ + ++ + + + N P LT Sbjct: 940 TNLNDIVLEVKEGEGLDPAYTFEDYKLKVNRYIEENRDHIAIYKLRNNIP--LTAFDYNS 997 Query: 1043 LQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKG 1102 L+ F + + +++T + ++ AA A + Sbjct: 998 LEHIFTGELGTPEDYEREYQDTPFGLLVRKIAKMEYEAAC------------AAFSEFIN 1045 Query: 1103 ENDWSSEQLSWLDRLAQALKEKVVLD-DDVFKTGNFHRRGGKAMLQRTFDD-NLDTLLGK 1160 + S Q+ ++ ++ + + ++ F + + FD ++ Sbjct: 1046 DQSLSQGQIVFVKKVIDYIMQNGYIENVSTLMKPPFDK---PKSFIKLFDGSKQKQIVEA 1102 Query: 1161 FSDY 1164 + Sbjct: 1103 VNQV 1106 >UniRef50_B5YGZ8 Type I site-specific deoxyribonuclease n=6 Tax=Bacteria RepID=B5YGZ8_THEYD Length = 916 Score = 529 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 218/1002 (21%), Positives = 402/1002 (40%), Gaps = 167/1002 (16%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E+++R ID L KAGW + + A+ E+P ++G ADY+ Sbjct: 3 PEQQARERIDNLLEKAGWVVQD-----YRRVNLSDSLGVAVREFPL------SEGIADYL 51 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LFV P+ V+EAK + ++ +Y Sbjct: 52 LFVNRVPVGVIEAKPEGTTLSGVAEQTAKY-----------------------------I 82 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 + + +PF Y + G E ++R+++D S+ + +H+P+ LL Sbjct: 83 LNPTNNLPIILETLPFAYESTGTET----------FFRNLKDPEPRSRRVFAFHQPKTLL 132 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 E + + + P + GLR Q +A++ +EK++ + + L+ MA+G GKT T Sbjct: 133 EWFNEKDTLRGR-LKKMPPLYTQGLRECQIEAIKNLEKSLSEDRPRALIQMASGGGKTFT 191 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFED--TRINGDTFNSIFDIKGLTDKFP 538 A++ ++RLI+ +R+LFLVDR +LG Q F+ T +G F +++I+ LT Sbjct: 192 AVSFIYRLIKFANARRVLFLVDRSNLGRQTRNEFQQYITPDDGRKFTELYNIQHLTSNTI 251 Query: 539 EDSTKIHVATVQSLVK--------------------------RTLQSDEPMPVARYDCIV 572 + +++ + T+Q L + + + +P+ +D IV Sbjct: 252 DPVSRVCITTIQRLYSMLKGETEFSPELEEFSGFEYPSADEPKEISYNPQIPIETFDFIV 311 Query: 573 VDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEP 632 DE HR +R++L++FDA I LTATP+ T+ F + Sbjct: 312 TDECHRSIYHI-------------------WRQVLEYFDAYIIGLTATPSKQTLGFFNQN 352 Query: 633 -VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP-QGEVINDTLEDD 690 V Y++ AV DG + D +I T ++G + G V++ ++ + L++D Sbjct: 353 LVMEYSHERAVADGVNVGYDV-YRIKTEITEKGSKVEAGFYVDKRDKLTRQLRWEQLDED 411 Query: 691 QDFEVADFNRGLVIPAFNRAVCNELTNYL------DPTGSQKTLVFCVTNAHADMVVEEL 744 ++ + +R +V P R + L T KTL+F ++HA+ +V + Sbjct: 412 LEYTPSQLDRDIVAPDQIRTIIKTFKEKLFTELFPGRTEVPKTLIFAKDDSHAEDIVHIV 471 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPS 804 R F K +D KIT K + +I F P I VTVD+++TG DI Sbjct: 472 REEFGK-----GNDFCKKITYRT--TGEKPEDLIVSFRNSYNPRIAVTVDMISTGTDIRP 524 Query: 805 ICNIVFLRKVRSRILYEQMKGRATRLC----------PEVNKTSFKIFDCVDIYSTLESV 854 + ++F+R V+SR+ +EQMKGR TR+ ++KT F I D V + Sbjct: 525 LECLIFMRDVKSRVYFEQMKGRGTRVISPDDLQAVTPDALHKTHFIIVDAVGVCEN--DK 582 Query: 855 DTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNR 914 RP+ + + L++ + + T + + +L K +R I R Sbjct: 583 TDSRPLERKRSIPFDKLIHSVALGNRDEDTLSSLVARLSKLDRELNEKDRREIEALAGGR 642 Query: 915 DRSETIDKQVRRLDELCQDAAGVNF-------NGFASRLREKGPHWSAEVFNKLPGFIAR 967 E I++ + +D + N E + + F+ P Sbjct: 643 KIKEIINRLIDAIDPDKKIEKAKEIFNTDNPSNEQIKNALENLVDEACKPFDN-PDLREI 701 Query: 968 LEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 L +K + D D V+ + + ++ F ++ + + A++ Sbjct: 702 LITIKKRNEQIIDTISK----DRVILAGFDDSAKEKAKTIIDTFKRFIEENKDELIAIEL 757 Query: 1028 VINRP---RDLTRKGLVELQE--------------WFDRQHFEESSLRKAWKETRNEDIA 1070 + +P R +T + + L + W + E S ++KA + + Sbjct: 758 LYKKPYGRRHITYEEIKRLADAIQKPPYYLTTELVWKAYEQLERSKVKKAGPQR----LL 813 Query: 1071 ARLIGHIRRAAVGDA--LKPFEERVDHALTRIKGE-----NDWSSEQLSWLDRLAQALKE 1123 +I +R +G L+PF E V+ + E ++ EQL WL + + Sbjct: 814 TDIISLLR-FTLGSTEFLEPFPEIVEERFSDWLREQQRSGKTFTPEQLEWLTMIKDHIAT 872 Query: 1124 KVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 ++ + F F+ +GG F D +L + ++ + Sbjct: 873 SCSIELEDFDYAPFYEKGGLMRFHYLFGTESDIILEELNEVL 914 >UniRef50_C4LDI1 Type III restriction protein res subunit n=4 Tax=Gammaproteobacteria RepID=C4LDI1_TOLAT Length = 1123 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 227/1025 (22%), Positives = 387/1025 (37%), Gaps = 184/1025 (17%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL--LNIPP 58 M NFE ++G N+ I AE DP + + ++R F E K + + L PP Sbjct: 1 MATSLNFELIRGHNEKLANIGMLAEQILYLDPGSAITRLRGFAEEVTKEIYEIDCLPKPP 60 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 N DLL+ + + + + H LR+ GN H L+ A L + +L + Sbjct: 61 TANFMDLLKNDAFVNITESRLRDLLHFLRKEGNDTAHGGDGSLDKAFAALGVAHQLGQYM 120 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 + + P + NL + ++LE+ + E Q ++ Sbjct: 121 AINYYGFFQSDLSALSYPPKPGNLNIAQ-----KELEKLLEENQAKQEQL---------- 165 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL 238 E E + +AR A K + Q +L Sbjct: 166 ----------SHELEMERKARQHAE---------------ATAEKLQAARVRSQQTANSL 200 Query: 239 NLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 E ++R LID QL AGW + G+ + PT T G+A Sbjct: 201 AWDENQTRKMLIDTQLAAAGWDLSDP---------EQVGLEIEVLHQPT----TSGIGYA 247 Query: 298 DYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DYVL+ P+AV+EAKR+ + ++ Y++ F Sbjct: 248 DYVLWGDDGNPLAVIEAKRSRETMQKGREQARYYAEGLAKQFN----------------- 290 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 +P + TNG E IW N + + ++ Sbjct: 291 ---------------CPMPIVFYTNGYEI--------CIWD---TKQYNAYRQVFGFYSK 324 Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 + L+ + K+ NP S + R YQ +A+++V +++ L+ ATGTG Sbjct: 325 DSLMFLHYQHQHKEKNLEVLNPDPS-IAGRPYQIEAIKSVTNRFQNQRRQTLIVQATGTG 383 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK 536 KTR +IA++ L++++ KR+LFL DR+ L QA AF+ + Sbjct: 384 KTRVSIALVALLLKARWVKRVLFLCDRKELRRQADDAFKLHLASEPRCVV------GESN 437 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 + S +I VAT ++ R + V +D I+ DE+HR Sbjct: 438 RIDQSARIFVATYPGMMNR----FSQLDVGFFDLIIADESHRSI---------------- 477 Query: 597 LDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDGFLI 648 + YR I D+FDA+++ LTATP A +T +F G+P + + A+ Sbjct: 478 ---YNKYRDIFDYFDALQVGLTATPVKFIARNTFDLFGCENGDPTFNFDLAEAIA--HEP 532 Query: 649 DQDPPIQII---TRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIP 705 P ++ T ++G++ +R + ++ + + + F+ + + + Sbjct: 533 RYLNPFRVKEFTTEFLRDGIHYKDLTPEQREQLEEDLGAEEAQ-NVHFKGKEIGKKIFSA 591 Query: 706 AFNRAVCNELTNYLDPTGSQ----KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 + + + L +Q KT++F + HA E L + F K YPQ Sbjct: 592 STDCQILENLMTNGIKDATQSLVGKTIIFAQSQEHA----EHLESMFVKLYPQYGTKVCK 647 Query: 762 KITGDADKDARKVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 I D+ + I F P I ++VD+L TG+D+P + N+VF R V+S + + Sbjct: 648 VIHNKVDRP----EARIDEFKSPDNPFRIAISVDMLDTGIDVPEVVNLVFARPVKSWVKF 703 Query: 821 EQMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEI 875 QM GR TRLC P +K F IFD + + + VV + LQT+ Sbjct: 704 WQMIGRGTRLCENLFGPGKDKEEFLIFDHYGNFKYFDE-EYTEAEVVASRSLLQTVFEAR 762 Query: 876 --------------TDSETYKITEADGRSFAEHSH-----EQLVAKLQRIIGLATFNRDR 916 + +AD E + +LV LQ L++ Sbjct: 763 LTLADTAMKKTSVKAFELAVALLKADICDLPEDAIAVRRELRLVKLLQESDMLSSMEAST 822 Query: 917 SETIDKQVRRL--DELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTD 974 +++K + L +D F+ + L+ S+E+ N IA ++ L Sbjct: 823 RHSLEKIIAPLMGSRPLKDMDASLFDRLIAELQTAHLLASSELENLKAELIAAVQNLAVT 882 Query: 975 INNLN 979 IN++ Sbjct: 883 INDVR 887 >UniRef50_A6W081 Type III restriction protein res subunit n=3 Tax=Gammaproteobacteria RepID=A6W081_MARMS Length = 1133 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 228/1025 (22%), Positives = 404/1025 (39%), Gaps = 177/1025 (17%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP--P 58 M NFEFL+ N+ +A AE DP + L ++R F E K + +P P Sbjct: 6 FMKSQNFEFLRPENEALANLAGLAEAVLFIDPGSALTRLRAFAEELTKAIYKEERLPRLP 65 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 + ++R+ V ++ + LR GN+ H DL A M L + +LA + Sbjct: 66 ESTLNTMVRDTVFQNCVTKPLVHQLNYLRTQGNETAHGGEGDLRTALMALGIAHQLACYL 125 Query: 119 YRLVTKDYDFPVPVFVLPERGEN---LYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKL 175 +P FV + + K++L++Q + + ++E ++ K Sbjct: 126 AIKYYMKKKASIPAFVDIKDNRADAIALSGSINKYKEELDKQKKLNDELLEQIEKERTKN 185 Query: 176 VALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIK 235 + A + +++ E QAI Sbjct: 186 LKYLDAPAYPDQLKRQQE-------------------------------------SQAIA 208 Query: 236 RTLNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 +L +E ++R LID+ L +AGW N I + + Sbjct: 209 DSLQWNEAKTRELLIDSMLVQAGWNVSDPE-------------NVGIEVEVAFPNNPSGK 255 Query: 295 GFADYVLFV-GLKPIAVVEAKRNN-IDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEV 352 G+ DYVL+ KP+AVVEAKR++ A ++ Y+ + F + Sbjct: 256 GYVDYVLWGSDGKPLAVVEAKRSSNSSDQAGREQARLYADSLEKQFGQR----------- 304 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 P + TNG E + IW N + + Sbjct: 305 ----------------------PVIFYTNGYE--------TFIWDDAQY---NAPRIVYG 331 Query: 413 WHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMA 472 ++ + L ++ + NQ +NP ++ + R YQ +A+++V + +++ L+ A Sbjct: 332 FYSKDSLDYLIYQRQYRDNQLEQNNPNLN-IADRLYQINAIKSVAHTFQEQRRKALIIQA 390 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKG 532 TGTGKTR +IA+ ++ + KR+LFL DR+ L QA AF++ + + I + Sbjct: 391 TGTGKTRVSIALADLMLNAGWAKRVLFLCDRKELRTQASEAFKNNLPS-EPRCEIGETNK 449 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQ 592 + +++ +I+V+T ++ R Q D V +D I+ DE+HR Sbjct: 450 I-----DENARIYVSTYPGMMNRFAQLD----VGFFDLIIADESHRSI------------ 488 Query: 593 FRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFG----EPVYRYTYRTAVID 644 + YR I D+FDA+++ LTATP + +T +FG +P Y++ + A+ Sbjct: 489 -------YNRYRDIFDYFDALQVGLTATPVKFISRNTFDMFGCETTDPTYQFGLKEAIEH 541 Query: 645 G--FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 +L+D + T ++G++ + ++ + ++ D ++ ++ D R + Sbjct: 542 EPPYLVDFKVK-DVTTEFLRDGIHYNDLTDDQKRQLEDDLGFDEAQNAS-YQGKDIGRKI 599 Query: 703 VIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 ++ + L NY + KT+VF HA E L F K YPQ + Sbjct: 600 FSEKTDQEILENLMNYGIKDETNSLVGKTIVFANNQKHA----EHLEKLFCKLYPQYGNK 655 Query: 759 AIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 I V+++I F K + I ++VD+L TG+D+P + N+VF + V+S Sbjct: 656 VCKVI----HNKVSHVESLIKEFKKGDNEFRIAISVDMLDTGIDVPEVVNLVFAKTVKSS 711 Query: 818 ILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLV 872 + + QM GR TRLC +KT F IFD + E + P V K LQT Sbjct: 712 VKFWQMIGRGTRLCKNLFGKGKDKTEFLIFDHYGNFEFFEQ-EYKEPQDVGGKPLLQTCF 770 Query: 873 NEITDS--ETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDEL 930 + + K + +G A + +A L R S + K++R++D L Sbjct: 771 EARVNLAIQALKYSHREGFDTAIELIKADIADLPR----------DSVAVRKELRQVDTL 820 Query: 931 CQDAAGVNFNGFASRLRE--KGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDID 988 Q + N L P + + + + + F D Sbjct: 821 LQTDSLQKLNATTQHLLSDTVAPLMAVRPLKDKHATQLDRLMAAVETSFIEQSSSFEDGR 880 Query: 989 DEVVS 993 D ++ Sbjct: 881 DTLIE 885 >UniRef50_C6LMG2 Type I restriction-modification system, R subunit n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LMG2_9FIRM Length = 1132 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 237/1235 (19%), Positives = 443/1235 (35%), Gaps = 247/1235 (20%) Query: 4 KSNFEFLKGV--NDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIPP 58 K+NF++LK +A +AE DP +++ R E K + + L +P Sbjct: 20 KTNFDYLKKDSKFSGFADVAISAEKIILMDPEASILNSRRAMEFAIKWMYSVDSDLEMPY 79 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVW 117 +N L+ V ++ +RR GN A H ++A +CL F + Sbjct: 80 QDNLQSLMNAEEYRHIVGPDLWKRMDYIRRCGNNAAHSNKKLGKDEAMLCLENLFIYLDF 139 Query: 118 YYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 + Q E+ +K + +E + ++ Sbjct: 140 IAYCYS----------------------------DQYEEHSFDKTLITSRIE-KARESKD 170 Query: 178 LNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRT 237 + K+QE A+ + L L A+ A EL+ + +++++ Y + + Sbjct: 171 AAIAVKTELAKEQEKSARQELDLQKLIAENASLKEELSSRRQEQQQTY--------VPKP 222 Query: 238 LNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 L+LSE ++R L ID+ L AGW + + G GF Sbjct: 223 LDLSEYKTRKLYIDSMLTDAGWVEGRDWRNEVELS---------------GMPNQSEVGF 267 Query: 297 ADYVLFVGL-KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADYVL+ + +P+A+VEAKR +DV ++ Y+ + + R Sbjct: 268 ADYVLYDDMHRPLAIVEAKRTCVDVSKGRQQAKLYADLLEQKYKRR-------------- 313 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 P + TNG E D + + + Sbjct: 314 -------------------PVVFLTNGFETHII-------------DGQYPERKCSAIYS 341 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI-VKGQQEILLAMATG 474 +L + + RYYQE A++AV + K +++ LL MATG Sbjct: 342 KRDLEKWFNL--MMTRTSLKHVVVNKNIAGRYYQESAIKAVCSSFGEKNRRKALLVMATG 399 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLT 534 +GKTRT IA+ L+++ + ILFL DR SL QA +F + N N L Sbjct: 400 SGKTRTVIALCDCLLKAGWIRNILFLADRNSLVTQAKRSFVNMLPNLSCTN-------LV 452 Query: 535 DKFPEDSTKIHVATVQSLVK----RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 ++ + +T Q+++ + +D ++ DEAHR Sbjct: 453 EEKDNYNAHCVFSTYQTMMNCIDTTCDDKGKLFTCGHFDLVICDEAHRSI---------- 502 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAV 642 + YR I +FDA I LTATP +T ++F G P Y Y AV Sbjct: 503 ---------YNKYRDIFAYFDAPLIGLTATPKDEIDKNTYEVFELENGVPTYGYDLAQAV 553 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 DG+L+D ++ + ++G+ + + ++ + + ++ + + N + Sbjct: 554 KDGYLVDYVS-VESELKFIEQGIVYDELSEEDKQTYEETFTDEHGNLPESISSSALNTWI 612 Query: 703 VIPAFNRAVCNELTNYLDP----TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 + V + L KT++F + HA+ ++E F K+YP L Sbjct: 613 FNEDTIKKVLHILMTEGIKIDYGQKLGKTIIFAKNHDHAEKILE----VFHKEYPHLTDY 668 Query: 759 AIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 A + D Q+ I F+ +++P I ++VD+L TG+D+P + N+VF +KV S+ Sbjct: 669 AKV-----IDNYMTYAQSAIDEFSDPKKMPQIAISVDMLDTGIDVPEVLNLVFFKKVMSK 723 Query: 818 ILYEQMKGRATRLCPEV----NKTSFKIFDCVDIYSTL--------ESVDTMRPVVVRPK 865 + QM GR TRLCP + +K F IFD + ++ ++ + K Sbjct: 724 AKFWQMIGRGTRLCPGLIDGEDKQKFYIFDFCKNFEFFRMNKGKATANMIALQGAIFNLK 783 Query: 866 VELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAK----------------------- 902 E+ + +I I D Q + + Sbjct: 784 FEISYKLQDIEYQTDRLIAYRDALVQQMSEKVQELPRDNFAVRQHLKYVDMYSSESNYNA 843 Query: 903 ---------LQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREK---- 949 + + L + D + + G ++ S L +K Sbjct: 844 LTYEDTLIVREEVAPLMLPDEDEASAVRFDALMYGIELAYLVGKRYSKARSDLHKKVAGI 903 Query: 950 -------GPHWSAEVFNKLPGF-------IARLEKLKTDINNL------NDAPIFLDIDD 989 +++ NK+ I E+++ + NL + + D Sbjct: 904 ASVANIPEIQAQSDLINKILNTDYVDNAGINEFEEIREKLRNLMKYIPSGTSKYVTNFTD 963 Query: 990 EVVSVKSLYGDYDTPQ--DFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWF 1047 E++S + + + + ++ + +++ + + N+P LT + L+E Sbjct: 964 ELLSTEWKESELENDELNNYKAKAEYYIRQHQDNIAIAKLKTNQP--LTSTDVETLEEVL 1021 Query: 1048 DRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWS 1107 + + + + ++G AA A + Sbjct: 1022 WHEVGTKQDYENEFGTKPLGEFVREIVGLDMNAA------------KEAFSEYLTNTSLD 1069 Query: 1108 SEQLSWLDRLAQALKEKVVL-DDDVFKTGNFHRRG 1141 S Q+ +++++ + + ++ D V + F RG Sbjct: 1070 SRQIYFVNQIVEYIVHNGMMKDLSVLQESPFTDRG 1104 >UniRef50_B1VEN8 Type I restriction-modification system, restriction subunit n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VEN8_CORU7 Length = 1226 Score = 524 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 217/935 (23%), Positives = 351/935 (37%), Gaps = 167/935 (17%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQH 63 SNF F+ V AE N +P T+ R E +H+ N+ + Sbjct: 8 PSNFGFVAQVWPALLNDCVQAERNALTNPITSCFYARRVLEKVVRHIWEFRNLGFAADTS 67 Query: 64 DLLRELG--KIAFVDDNILSVFHKLRRIGNQAVHEYHN--DLNDAQMCLRLGFRLAVWYY 119 R V L H LR N AVH+ A + F + W Sbjct: 68 IFGRMQDERFTTIVPQAQLDKLHFLRINCNNAVHDSDVPITPQLAVRVVTHLFDVLTW-- 125 Query: 120 RLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVR-EKAQTQAEVEAQQQKLVAL 178 + P P ++Q+ L Q R + + A+++A+ ++L Sbjct: 126 -ATARHSTNPQAQPRAP------FNQQALKNHHPATQMGRAQLQKLNAQLQAKDEELSNT 178 Query: 179 NGYIAILEG---KQQETEAQTQARLAALEAQL----------------------AEKNAE 213 ++ E ++ E A+ +AR A +A++ AE++AE Sbjct: 179 ALLLSEAEQARLEEAEKHAEERARFATRQAKVEEEHAETEAELAAAKEELARLAAERDAE 238 Query: 214 LAKQTEQERKAYHKEI-TDQAIKRTLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGA 271 + + + R KE A ++SE E+R LID L AG+ K L Sbjct: 239 IERLRAELRDELAKEAGAGTAPALPPSISEAETRKDLIDPMLAAAGF-VQGKNLT----- 292 Query: 272 RPEPGVNKAIAEWPTGKDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRY 330 + + P G + G+ADYVL+ KP+AVVEAKR + + ++ Y Sbjct: 293 -----IEHPVQGMPVGAESPRGNGYADYVLWDDDGKPLAVVEAKRASGSLSEGAVQARLY 347 Query: 331 SKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMK 390 + C ++ + P + TNG + Sbjct: 348 ADCLEHKHGQR---------------------------------PIIFCTNGHQISMVDD 374 Query: 391 TKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQE 450 + ++A+ + +L M+ + + + ++ R YQ+ Sbjct: 375 QTN----LPGSGAGYTARAVEGYPDAAQLRRMINRRHTR--KPLSQVVVDPDIAGRDYQQ 428 Query: 451 DAVRAVEKAIVKG-QQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQ 509 + +R V +A ++ LL MATGTGKTR AIA L Q+ ++LFL DR +L +Q Sbjct: 429 EMIRRVTEAFESQLKRRALLVMATGTGKTRVAIATAKLLRQANWVGKVLFLADRTALVDQ 488 Query: 510 ALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE---PMPVA 566 A F D + N + + PE + ++V+T Q+++ E Sbjct: 489 AHDNFVDLYPDSAPVNLL--------REPEGTGGVYVSTYQTMMGLIDDDGEHPAAFRPF 540 Query: 567 RYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA---- 622 +D I++DEAHR ++RILD+FDA + LTATP Sbjct: 541 DFDLIIIDEAHRSIYH-------------------RFKRILDYFDAYVLGLTATPRAEVT 581 Query: 623 LHTVQIFG----EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 +T Q+F P YT A+ D +L+ AQ+ ++L G + E + Sbjct: 582 HNTYQLFDIEDKTPTGSYTLEQAIEDKYLVPPQVL-------AQDSLFLRSGVRYEDLDE 634 Query: 679 QGEVINDTLEDDQD-----------FEVADFNRGLVIPAFNRAVCNELTNYLDPTGS--- 724 + +++ D E D A+ N L R V L Sbjct: 635 EEQLLWDAAEWGTDEDGNPLDPPDGVTAAEINSRLYNRDTIRGVLRTLVEQGIKVEGGDR 694 Query: 725 -QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNK 783 KT++F T HA+++ EEL F PQ + IT R + RF Sbjct: 695 LGKTIIFARTQRHAELINEELGRCF----PQQAGERAAVITHST----RYAAEELKRFKN 746 Query: 784 -ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE-----VNKT 837 +I ++VD+L TGVD+P + N+VF + V S + QM GR TRL + ++K Sbjct: 747 PAGTLDIAISVDMLDTGVDVPEVVNLVFFKPVYSATKFWQMMGRGTRLRRDLFGENLHKD 806 Query: 838 SFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLV 872 F++FD T P V R + + L Sbjct: 807 KFRVFDFCGNVRFFTEQLTEEPGVGRQQTLSERLF 841 >UniRef50_C8W942 Type III restriction protein res subunit n=5 Tax=Bacteria RepID=C8W942_ATOPD Length = 1125 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 250/1275 (19%), Positives = 446/1275 (34%), Gaps = 273/1275 (21%) Query: 6 NFEFLK--GVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIPPCE 60 NF FLK + AE + P + R E K + +N P Sbjct: 2 NFSFLKDIKEYEMFSGACEDAERTFASSPAMCALACRKAMELAVKWVYAADETMNEPWRS 61 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRL-GFRLAVWYY 119 N L+ E +D + ++GN A H + F W Sbjct: 62 NLASLIHEASFKNAMDTTTWGQLRYIWKLGNNAAHTQRQIDARDALAALAGLFNFVEWID 121 Query: 120 RLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQL--EQQVREKAQTQAEVEAQQQKLVA 177 Y+ E + + + + +Q EQ++R+ Q AE +A Sbjct: 122 YCYGPSYE------------ERHFDPKAIPVLKQALDEQKLRKTLQENAEKDA------- 162 Query: 178 LNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRT 237 R+A LE Q+ + A+ ++ EQ + H Sbjct: 163 ---------------------RIAQLEEQVRAQRAQFSETKEQRPEETHFNPD------- 194 Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 + E E+R ID L AGW D ++ + G GF Sbjct: 195 -EIPEYETRKRYIDVDLEYAGWNLDDSVKTEAEVS---------------GMPNPTGTGF 238 Query: 297 ADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 DYVL KP+A+VEAKR D ++ Y+ C + + Sbjct: 239 IDYVLLGRNGKPLAIVEAKRTMYDPLKGEQQARLYANCLEKKYGYR-------------- 284 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 PF + +NG E R + D +A Sbjct: 285 -------------------PFVFLSNGFETRF------------MDDGTAAPRACSGVFG 313 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGL----RYYQEDAVRAVEKAIVKGQQEILLAM 471 E+L ++ + +N + P ++ RYYQ +A+ AV + + +G + LL M Sbjct: 314 REDLERLMNRRGKVKN--LSTVPVNRDIAGGGRNRYYQVEAIEAVCQNMEEGHRRSLLVM 371 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIK 531 ATGTGKTRTA ++ L ++ +LFL DR +L QA AF++ T ++ ++ Sbjct: 372 ATGTGKTRTAAGLVDVLSRAGAVTNVLFLADRVALVRQAKNAFQNYL----TTMTVCNLC 427 Query: 532 GLTDKFPEDSTKIHVATVQSLVK-----RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQ 586 DK +I +T +++ + A +D I+VDEAHR Sbjct: 428 ETDDKAKNVDARIVFSTYPTILNAVDDVKRDGDARLFTPAHFDLIIVDEAHRSIF----- 482 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTY 638 YR I D+FD+ + LTATP +T F G P Y Y Y Sbjct: 483 --------------KKYRAIFDYFDSPVVGLTATPKDEVDRNTYDFFQVERGIPTYLYEY 528 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDF-EVAD 697 TAV ++ I++ T +G+ + + +R + D+ E + Sbjct: 529 ATAVEKDKVLVPYYNIEVQTNFLSKGITYDELSEEDRQRYDDDWEEAQGTSAPDYVEASA 588 Query: 698 FNRGLVIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYP 753 +R + V L + KT++F HA+++V+ F + YP Sbjct: 589 LDRFVFNEHTIDLVLTTLMDEGIKIKGGEHIGKTIIFAQNRKHAEIIVKR----FNELYP 644 Query: 754 QLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 + K D A T+IT F + +P I V+VD++ TG+D+P + N+VF ++ Sbjct: 645 KFGAQGFCKRVVHTDDYA---PTVITDFETKEMPTITVSVDMMDTGIDVPEVVNLVFFKQ 701 Query: 814 VRSRILYEQMKGRATRLCPEV-----------NKTSFKIFDCVDIYSTL---------ES 853 V+S++ + QM GR TRLC + +K F IFD + + Sbjct: 702 VKSKVKFWQMIGRGTRLCEGIHAQDKVSGEYEDKKHFFIFDWCGNFEFFRQEQKLAEGAN 761 Query: 854 VDTMRPVVVRPKVELQTLVN----EITDSETYKITEADGRSFAEHSHEQLVAKLQR--II 907 ++M+ V + + L + D + +++ + S ++ + + I Sbjct: 762 PESMQEKVFKRQALLAQALQGADFASDDYQEWRVRVVQEMAVKVQSVKEPLTAAVKLHIR 821 Query: 908 GLATFNRDRSETIDKQVRRLD---------ELCQDAAGVNFN------------------ 940 + F++ S + + V D ++ + F+ Sbjct: 822 EVDKFSQVPSYQVLEDVDIADLNKVAPLVRADGEEELSLRFDALMYAYMVVLISGTNTEN 881 Query: 941 ------GFASRLREKG----PHWSAEVFNK-------LPGFIARLEKLKTDINN------ 977 G A RL+ K ++ + + LE+++ ++ + Sbjct: 882 HRTRVVGIAVRLQNKASIPQVREKMDLLKRVTSEGFLESASLITLEEVRVELRDLMKFLI 941 Query: 978 LNDAPIFLDIDDEVVSVKSLYGDYDTP----QDFLEAFDSLVQRSPNAQPALQAVINRPR 1033 + P+ ++ V GD +P +D+ + ++ N + N+ Sbjct: 942 GDSRPLMVETRVTDSVVGRCEGDAISPKEDFEDYKLKVSRYIAQNANHTVIAKIHHNQ-- 999 Query: 1034 DLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERV 1093 +T L EL+ F + E+ R A+ +T + ++ G AA+ Sbjct: 1000 QMTSFELNELERIFTVELGNEADYRAAYGDTPFGKLVRQVAGLSHEAAM----------- 1048 Query: 1094 DHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDD- 1152 A G+ S +Q+ ++ ++ ++ +D F + L FD Sbjct: 1049 -DAFAEFLGDESLSRQQMDFVHKIVDYVETNGFMDLADLGKPPFDQPQSFVRL---FDGR 1104 Query: 1153 ---NLDTLLGKFSDY 1164 L ++ +D Sbjct: 1105 RQRRLVQIIQSVNDN 1119 >UniRef50_Q0ATD1 Type III restriction enzyme, res subunit n=4 Tax=Proteobacteria RepID=Q0ATD1_MARMM Length = 1137 Score = 522 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 252/1230 (20%), Positives = 435/1230 (35%), Gaps = 232/1230 (18%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCEN 61 M NFE L+ + AE D + L+K+R+F E K + L +P E+ Sbjct: 1 MKSVNFEILRKDWPELAQLGAFAETYAHTDAASALVKLRLFAENLTKDIYRDLRLP-RED 59 Query: 62 QHDLLRELG---KIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 + + LG + + ++ H +R GN+A H + A L+ LA W Sbjct: 60 RMSFVDMLGGSAFQSAIPRVVIDKLHAIRVHGNKAAHGEQATIKTALFLLKEAHGLARWL 119 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 + +P+F + + REK + + AQ+ ++ L Sbjct: 120 LVAFKRQKADDLPLFKELDNPVQGASA---------TELQREKKRAMERLAAQEAQMQVL 170 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL 238 + K + EA+T+ AA E L Sbjct: 171 LKELEAEREKAKAAEAKTEELSAAREE-------------------------GDKAASEL 205 Query: 239 NLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 E +R +ID L AGW + + + +A+ PT +G+ Sbjct: 206 EFDEATTRARIIDMMLASAGWDVAN-----GLKSTEQVAKELEVADQPT----ETGKGYV 256 Query: 298 DYVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DYVL P+AVVEAKR + + ++ Y+ + + Sbjct: 257 DYVLRDGDGMPLAVVEAKRTSKNAELGRKQAELYANALEKQYGIR--------------- 301 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 P + TNG + IW D + + ++ P Sbjct: 302 ------------------PAIFYTNGYD----------IWLWDDAGGF-PPRKVYGYYSP 332 Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 + L + L + Q P ++ R YQ + ++ V + ++ L+ ATGTG Sbjct: 333 DSL-QYLVRFQRANKQPLTALPPNKDIAGRLYQVETIKRVSERFEDKHRKALIVQATGTG 391 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK 536 KTR AIA+ LI+++ KR+LFL DRR L +QA AF + + G+ + Sbjct: 392 KTRVAIALSELLIRAKWAKRVLFLCDRRELRKQAKNAFGNF-LKGEPIRVVNSAIRGNA- 449 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 + +I VAT +++K + V +D I+ DE+HR Sbjct: 450 ----NERIFVATYPAMLK----VYQAFDVGFFDLIIADESHRSI---------------- 485 Query: 597 LDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFG----EPVYRYTYRTAVIDGFLI 648 + Y + +FD ++ LTATP T +F P Y A+ +G+L Sbjct: 486 ---YNVYGDLFYYFDCPQVGLTATPVDFVTRSTFDLFKCEGQNPTANYELEQAIEEGYLT 542 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 + + T+ +EG+ L + +R + + + D D+ ++ + N Sbjct: 543 PFEV-YEHTTKFLREGIRLEGLTKAQRQQLEDQGED---PDQYDYSSEVVDKAIFNKDTN 598 Query: 709 RAVCNELTN--YLDPTGS--QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT 764 RAV L D +G KT++F ++AHA + LR F + YPQ I Sbjct: 599 RAVLRNLMENGLRDASGQTIGKTIIFARSHAHALL----LREVFDELYPQYGGRFCQVI- 653 Query: 765 GDADKDARKVQTMITRFN---KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 D + + +I F + I ++VD+L TG+D+P I N+VF + VRS + + Sbjct: 654 ---DNYDPRAEQLIDDFKGDGANKDLTIAISVDMLDTGIDVPEILNLVFAKPVRSPVKFW 710 Query: 822 QMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVE-LQTLVNEI 875 QM GR TRLC P +KT F+IFD + E+ +P RP LQ L + Sbjct: 711 QMVGRGTRLCEDLFGPGQHKTVFRIFDHWGNFERFET--GYKPAEPRPSKSLLQQLFEQR 768 Query: 876 TDSETYKITEADGRSFAEHSHEQLVAKLQRIIG-----LATFNRDRSETIDKQVRRLDEL 930 D + +++ F E + + A + + + R + V+ Sbjct: 769 IDLAETALRKSEIPVF-ETVVQLIAADVSALPENSIAVREKWREKRQFADLETVKSFAPT 827 Query: 931 CQDAAGVN------------------FNGFASRLREKGPHWSAEVFNKLPGFIARLEKLK 972 A F+ +RL+ SAEV + + RL+ L+ Sbjct: 828 TVAALRQTIAPLMQWRDVRGKTEAHAFDLLIARLQTAALQGSAEVEDLRADMMGRLDTLQ 887 Query: 973 TDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQD-------FLEAFDSLVQRSPNAQPAL 1025 +N + + +I EV S + P D E +++ PA Sbjct: 888 MHLNPVRE---RAEIIKEVKSA--AFWSDLKPLDLERVRIPLREIIHHHDRKAGPKVPAK 942 Query: 1026 QA----------VINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAAR--- 1072 R T + ++ D + + ++ RN + Sbjct: 943 VIDVEEEASEFQYGRRATSYTANEMKAFKQAVDAELKKHIETNPILQKIRNGEPVTDADL 1002 Query: 1073 --LIGHI-------RRAAVGDALKPFEE---------------RVDHALTRIKGEND-WS 1107 ++ + A + + P E V + + Sbjct: 1003 QAIVSLVLTQNPDLSEAQLNEFFSPTAENLLFKLREMTGLEATTVRDRFADFVNAHPTLT 1062 Query: 1108 SEQLSWLDRLAQALKEKVVLDDDVFKTGNF 1137 ++Q +L+ L L + V+ D F Sbjct: 1063 AKQTRFLNLLQNHLIKFGVITVDRLYDQPF 1092 >UniRef50_C6Q0A8 Type III restriction protein res subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q0A8_9CLOT Length = 1102 Score = 518 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 272/1201 (22%), Positives = 455/1201 (37%), Gaps = 225/1201 (18%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPP--CENQ 62 SNF FL + AE+ D N T++KMRMFGE + L I Q Sbjct: 2 SNFSFLNKKWTILAKLGTQAESYLNTDNNATMLKMRMFGEKIIDLMLAALRIETDRFATQ 61 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 D ++ L + ++ I +F +RR GN+A H+ + + DA CL +++A W+Y V Sbjct: 62 DDKIKLL-RTTNINKAIPDLFDIVRRFGNKANHDGYENKKDALECLISMYKVAAWFYIRV 120 Query: 123 TKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYI 182 TKD F +P+ + K+ + Y Sbjct: 121 TKDDSIRPLTFKIPKATVP------------------------------KAKVYDIEAYA 150 Query: 183 AILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSE 242 E ++E + QA ++ A QTE+++K ++ ++ TL L+E Sbjct: 151 EEKEKIKEEHIKEVQA---------VKEEAPKLVQTEEDKK------IEKEVETTLELNE 195 Query: 243 EESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGNQGFADYV 300 E+R LID L AGW ++K E P E G G+ADYV Sbjct: 196 AETRRKLIDIMLNDAGWNVNNK--------------ESVKIELPLENHKEKGKTGYADYV 241 Query: 301 LFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 LF KP+AVVEAK+ ++D ++ Y+ + + + Sbjct: 242 LFDKKGKPLAVVEAKKTSVDAIVGRQQAVEYAGSIERLYGKR------------------ 283 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 P + TNG E I+ D D + + + ++ E+L Sbjct: 284 ---------------PIVFYTNGYE----------IYMWD--DMHSEPRQVWGFYTLEDL 316 Query: 420 LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTR 479 E+ K++ + R YQ + ++ V + GQ++ LL MATGTGKTR Sbjct: 317 EELFFKHKYKKD--LNKVNIDKNIAGRPYQIEGIKRVYERYQNGQRKALLVMATGTGKTR 374 Query: 480 TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE 539 T IA+ L+++ KR+LFL DR L +QA ++ + + TF T K + Sbjct: 375 TVIALTKGLMEASWAKRVLFLADRDELVKQA----KEDKNSFKTFMPEQISCRFTGKNSD 430 Query: 540 D-STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLD 598 + ++ +T Q++V V +D I+ DE+HR Sbjct: 431 NREATLYFSTYQTMVN----YYREFSVGFFDLIICDESHRSV------------------ 468 Query: 599 YVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDGFLIDQ 650 YR IL++FD+ + LTATP +T +F G+P + ++ A + Sbjct: 469 -YKVYRDILEYFDSHIVGLTATPVNFIERNTFSLFSCEDGDPTFNFSVEDA------WNH 521 Query: 651 DPPIQIITRNAQEGV-YLSKGEQV-ERISPQGEVINDTLEDDQD--FEVADFNRGLVIPA 706 PP I R +L KG + E Q + +++ D Q+ ++ + + + Sbjct: 522 VPPYLIEPRVIDATTDFLRKGIKYNEMTEEQRQQVDEEGYDGQEINYDKKELEKKITNKD 581 Query: 707 FNRAVCNELTNYLDPTGSQ--KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT 764 NR + L G KT++F HA L + F + YPQ + I Sbjct: 582 TNRYILRTLMEQGIKVGDYIGKTIIFAKNKKHA----NLLDSLFNELYPQYKGKLTAVIY 637 Query: 765 GDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMK 824 + + +I F + P I ++VDLL TG+DIP I N+VF + V S++ + QM Sbjct: 638 SEI----KDKSVLIENFKDKDFPRIAISVDLLDTGIDIPEIVNLVFAKPVYSKVKFWQMI 693 Query: 825 GRATRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSE 879 GR TR C +K F IFDC + E M P PK + +L ++ Sbjct: 694 GRGTRRCDNLFGEGQDKKEFAIFDCYKNFEFFE----MHPKGYEPKPQKTSL--QVRFEI 747 Query: 880 TYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNF 939 T K+ E E AKL+ I + S I K ++++++ + N Sbjct: 748 TCKLLEKYKAKRNLDICEAFAAKLKADIEELPED---SIEIKKNRKKIEQVKRKEYWNNL 804 Query: 940 NG-FASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLY 998 + F +L+ + + K + I N ++ E+ Sbjct: 805 SEDFIKKLKLEIAILIQWIDCKDNSEAVAFDNSIYRILFYNITGDKEALNREINYTMEKL 864 Query: 999 GDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRP---RDLTRKGLVELQEWFDRQHFEES 1055 + + LV+ + +P +DL+ + L E++ Sbjct: 865 SKLKLNLNQFDGTRELVKS-----------LLQPLGWQDLSYERLEEIRLSLRELM---- 909 Query: 1056 SLRKAWKETRNEDIAARLIGHIRRAAVGDAL-----KPFEERVDHALT----------RI 1100 + A T + + G L +P+E+RV A+ +I Sbjct: 910 KYKGAGSNTFVVLDIKDTGSITKEISAGSVLYGGNMEPYEKRVKLAIESKLNDQIVMYKI 969 Query: 1101 KGENDWSSEQLSWLDRL--------AQALKEKVVLDDDVFKTGNFHRRG-GKAMLQRTFD 1151 + S E+L + + L K +D + + G + L R F+ Sbjct: 970 RKGEKLSEEELKSVYSIFSESFVYSIDELSSKTDIDKEDVISIIRKFVGVDEGELNRRFE 1029 Query: 1152 D 1152 D Sbjct: 1030 D 1030 >UniRef50_C0E6A8 Putative uncharacterized protein n=1 Tax=Corynebacterium matruchotii ATCC 33806 RepID=C0E6A8_9CORY Length = 1158 Score = 518 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 265/1266 (20%), Positives = 440/1266 (34%), Gaps = 230/1266 (18%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE- 60 SNF F+ V AE + +P I+ R E H+ + Sbjct: 4 PQPSNFAFIGRVWPELLIHCRNAEQSAVSNPRVAGIEARFTLERLVDHIVEAYGLRSVSD 63 Query: 61 -NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEY-HNDLNDAQMCLRLGFRLAVWY 118 N +D L V+ I + LRR GN A H H D A + F + VW Sbjct: 64 WNLNDKLNHRSFKDRVNQRIHDKMNVLRRFGNDAAHNPDHIDPERAVRAIGQLFDILVWA 123 Query: 119 YRLVTKDY-------DFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQ 171 V + F + + QE+ L QQL++ V E T+ + + Sbjct: 124 AVNVARPPLERTKLPTFDRSIVYNAPKQRQRSQQEIAKLNQQLQKAVDEIETTKLLLTER 183 Query: 172 QQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITD 231 ++ + + LEA+LA+ A++A T + Sbjct: 184 EETWRQERKAHLDQIAAFKGQTEELARARDQLEAELAQLRADIAANTRSIDTS------- 236 Query: 232 QAIKRTLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDE 290 +SE E+R LID L +AG+ L+ T Sbjct: 237 ----NNFAISEAETRRDLIDPALAEAGFNVARGNLK-------------------TEFCL 273 Query: 291 TGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSP 349 +G DYVLF +P A+VEAKR + A ++ Y+ + F Sbjct: 274 ADGKGVVDYVLFGDDGRPYAIVEAKRAGKAIDAGRQQAEYYADELEKQFGLR-------- 325 Query: 350 DEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKA 409 P Y TNG E R + + S+A Sbjct: 326 -------------------------PIIYYTNGHEIR--LLDDAANLPGIGAGAGYPSRA 358 Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILL 469 + + +EL M+ Q+ Q +++ R YQ ++AV + G + LL Sbjct: 359 VEGYATKDELYAMIRRRTQR--QDLNTVSVDTQIAGRPYQITMLQAVAERFGAGHRRALL 416 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 MATGTGKTRTAIA++ +L Q+ K +LFL DR+SL +QA AF + + + + + Sbjct: 417 VMATGTGKTRTAIALVKQLAQAGWVKNVLFLADRKSLVKQAAEAFSEHLRDMPVVDLLRN 476 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 G + +++ +T Q+++K ++D I+VDEAHR Sbjct: 477 QHG--------TGQVYCSTYQTMMKLL---GSRFGTYQFDLIIVDEAHRSIYR------- 518 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTA 641 Y RI D+FD++ + LTATP +T +F G+P Y+ A Sbjct: 519 ------------RYSRIFDYFDSLLLGLTATPRCDVDHNTYALFQLNDGQPTANYSLDEA 566 Query: 642 VIDGFLIDQDP--PIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ--DFEVAD 697 V +G+L+ +I R+ LS EQ + + + +D L D + E + Sbjct: 567 VDEGYLVPFKAFQCSSVILRDGVAYKDLSPEEQQQWENQDWGIDDDGLPLDIPLEVESEE 626 Query: 698 FNRGLVIPAFNRAVCNELTNYL----DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYP 753 N L R V ++ + KT+ F + HA +V + + P Sbjct: 627 INLKLYNKDTIRKVVGQVLCHGIKVAGADRIGKTIFFTRSKKHAQLVCDIIHET----NP 682 Query: 754 QLEHDAIIKITGDADKDARKVQTMITRFNKERL--PNIVVTVDLLTTGVDIPSICNIVFL 811 Q+ I D+ +I RF ++ ++VD+L TGVD+P++ N+VF Sbjct: 683 QVRAAVITHEVYDS-------LDLIDRFKASGKGSLDVAISVDMLDTGVDVPAVVNLVFF 735 Query: 812 RKVRSRILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLESVDTM--------R 858 + V S + QM GR TRL P ++K F +FD D E + + R Sbjct: 736 KPVYSNTKFWQMIGRGTRLAPNLFGKGLDKREFYVFDYCDNLRRFEDAEHIVSTTGSQQR 795 Query: 859 PVVVR---PKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII-------- 907 P+ R ++EL +L+ + ++ + LV R Sbjct: 796 PLSERTFLKRIELASLLPADDPTRADLVSGLRNQLQTVPISSVLVRPEDRAELEHYLCAD 855 Query: 908 ------------GLATFNRDRSETIDKQVRRLD------ELCQDAAGVNFNGFASRLREK 949 LA ++Q +R D +L R+ Sbjct: 856 AWGSGTDIESAGKLAYLPFADDPEDEEQAKRFDYLMLTLQLALARGEALPTRHRDRVTNI 915 Query: 950 GPH-------------------------WSAEVFNKLPGFIARLEKLKTDINNLNDAPIF 984 H W L L L I+ + + Sbjct: 916 ARHLLSKTNVPRVADAASTLEHYSEDLWWEGITIADLELARRTLRTLVQFIDPGYRSEVV 975 Query: 985 LDIDDEVVSVKSLYGDYDTP----QDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGL 1040 LDI+DE+ +T + ++++ + P + +P LT L Sbjct: 976 LDIEDELAEPAEFNLPTETANLSYSSVEDQLREVLEKHLDDLPIQRLRKMKP--LTAMDL 1033 Query: 1041 VELQEWFD-RQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTR 1099 L+E + +E R ++G +R D +E V Sbjct: 1034 AALEEIIAGVEGVDEFRARIG---------DQSIVGFVRSLIGLD-----QEAVQEQFAD 1079 Query: 1100 IKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLG 1159 ++ +++Q +L R+ + L + L F G + F + DT++ Sbjct: 1080 FLSRSNLNAKQQEFLRRIIRVLAKTGSLTIGQLFEEPFKDLG---NVFDVFPGD-DTIVY 1135 Query: 1160 KFSDYI 1165 D + Sbjct: 1136 DLKDRL 1141 >UniRef50_Q043T1 Type I site-specific restriction-modification system, R (Restriction) subunit related helicase n=14 Tax=Firmicutes RepID=Q043T1_LACGA Length = 1113 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 239/1271 (18%), Positives = 449/1271 (35%), Gaps = 271/1271 (21%) Query: 1 MMNKSNFEFL--KGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LN 55 M++ +NF++L + IA AAE DP T++I R E K + + L Sbjct: 1 MLSVTNFDYLLEEPQFKDFVEIAIAAEKVAVIDPATSVIDCRRAMELAVKWMYSVDKDLR 60 Query: 56 IPPCENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRL 114 P + L+ L VD N +RR+GN AVH L++A +CL+ F Sbjct: 61 TPYQDKLVTLINTLDFKDIVDPNTWQGLDLIRRLGNVAVHTNRKVSLDEAVLCLKALFSF 120 Query: 115 AVWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQK 174 +Y ++ + + +E + Sbjct: 121 FDMLDYCYGSNYQ---------------------------KKDFDKSLVGKYRLEFIPKV 153 Query: 175 LVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAI 234 + A + L L + + Q + + +Y+ Sbjct: 154 VSAEKATFS----------------LDKLTKKNKSLQESMTAQRKAQEDSYNP------- 190 Query: 235 KRTLNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGN 293 + +SE ++R + IDA L +AGW L + G Sbjct: 191 -KPFGISEFKTRKIYIDAMLAEAGWVEGQNWLNEVELK---------------GMPNKAG 234 Query: 294 QGFADYVLFVGL-KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEV 352 G+ADYVL+ +P+A++EAK+ DV ++ Y+ + + R Sbjct: 235 IGYADYVLYDDAHQPLALIEAKKTCKDVAVGRQQAKLYADLLEKKYGRR----------- 283 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 P + +NG E R D + + + Sbjct: 284 ----------------------PVVFLSNGFETRII-------------DNQYPERQVSS 308 Query: 413 WHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI-VKGQQEILLAM 471 + +L ++ QK Q + + RYYQ+ A++AV ++ + +++ LL M Sbjct: 309 IYSKRDLEKLFNL--QKVRQPLTNIIVDDNIAGRYYQKAAIQAVCESFSKENRRKALLVM 366 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIK 531 ATG+GKTRTA+ ++ L+ + K +LFL DR +L QA +F + + + N + D Sbjct: 367 ATGSGKTRTAVGLVKVLLNAGWIKHVLFLADRDALVTQAKRSFVNLLPDLSSTNLVEDKS 426 Query: 532 GLTDKFPEDSTKIHVATVQSLVK-----RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQ 586 + + +T +++ + +D I+VDEAHR Sbjct: 427 N-------YNARCVFSTYATMMNVIDTATDDDKKKLYTAGHFDLIIVDEAHRSI------ 473 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTY 638 + YR I +FDA + LTATP +T IF G P Y Y Sbjct: 474 -------------YNKYRNIFTYFDAPLVGLTATPKDDIDKNTYSIFNLEDGVPTYGYDL 520 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADF 698 AV DG+L+ I+ + + G+ E+ + ++ + + + Sbjct: 521 AQAVDDGYLVPYKS-IETHLKFMENGINYDDLSTQEKEEYEETFTDEDGDLPKKIDSGKL 579 Query: 699 NRGLVIPAFNRAVCNELTN------YLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKY 752 N+ L R V N L N Y + G KT++F + HA+ +++ + + Sbjct: 580 NKWLFNKDTIRKVLNILMNQGLKIDYGEKIG--KTIIFAKNHRHAEEILKVFNEEYPQFS 637 Query: 753 PQLEHDAIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFL 811 + D Q+ I F+ ++LP I V+VD+L TG+D+P N+VF Sbjct: 638 RNTHGQPYATV---IDNYTNYSQSAIDEFSDPDKLPQIAVSVDMLDTGIDVPECLNLVFF 694 Query: 812 RKVRSRILYEQMKGRATRLCPE----VNKTSFKIFDCVDIYSTLE--------------- 852 +KV S+ + QM GR TRLCP +K F IFD D + Sbjct: 695 KKVMSKAKFFQMIGRGTRLCPHLLDGKDKQEFYIFDFCDNFHFFRMGKGHEAGVQETLQS 754 Query: 853 -----SVDTMRPVVVRP--KVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQR 905 ++ +R + P + + + K+ E + +FA H V K + Sbjct: 755 ALFNLKMELVRKLQEEPYQTDDFNQYRKTLVEDLCKKVKELNRNNFAVKQHIAYVDKFSQ 814 Query: 906 IIG--------LATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEV 957 I + ++ S I + L DA A +E ++ Sbjct: 815 IENYNNLTYEDIVNTKKELSPLILPDNDEPNALRFDALVYKM-ELAKMSQESYGRLKIDL 873 Query: 958 FNKLPGF--IARLEKLKTDINNLND--APIFLDIDD------------EVVSVKSLYG-- 999 NK+ + + ++K + + + P +++ D +++ G Sbjct: 874 CNKVSKLSDLMTIPQVKEKKDLIKEILQPEYVESTDVKDLEYIRQSIRDLIQYLPKKGTV 933 Query: 1000 -------------------DYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGL 1040 + DT +++ + +++ + ++ N P L+ + L Sbjct: 934 YYTNFADTVLDSTIHDAELETDTLKNYKAKAEFYIKQHQSENLMVKIRDNEP--LSSQDL 991 Query: 1041 VELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRI 1100 EL+ ++ + +K + ++G AA A + Sbjct: 992 KELESILWQKLGSKEEYQKEIGNKAPGEFVRSIVGLDMHAA------------KKAFNKY 1039 Query: 1101 KGENDWSSEQLSWLDRLAQALKEK-VVLDDDVFKTGNFHRRGGKAMLQRTFDD------N 1153 + +Q+ +++ + + + + + D V + F +G + F+ Sbjct: 1040 LDTVPLNKQQIYFINEIIEYIVKNGTLTDMHVLQESPFTNQG---SISELFESDITIWLK 1096 Query: 1154 LDTLLGKFSDY 1164 + T + + + Sbjct: 1097 VKTAIDEINSN 1107 >UniRef50_C4ZF20 Type I restriction-modification system R subunit (Endonuclease) n=22 Tax=Firmicutes RepID=C4ZF20_EUBR3 Length = 1116 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 235/1262 (18%), Positives = 439/1262 (34%), Gaps = 258/1262 (20%) Query: 4 KSNFEFL--KGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHL---GLLLNIPP 58 ++NF++L K A AE + P T I R E + + L++P Sbjct: 2 ETNFDYLLKKEEYADFAKQAVEAEKSLSISPATCAILSRRALELAVRFVFSYDAELSLPY 61 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVW 117 +N L+ E ++ + + +GN AVH +N ++A + LR F W Sbjct: 62 RDNVSSLIHEPTFRRIIEPRLFPMLKYTIHLGNVAVHTNNNIGRDEAIIALRDLFEFCDW 121 Query: 118 YYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 +++YD E Y + +L + + E + + ++ +KL Sbjct: 122 IDYSYSREYD------------EKTYDESILASGNEKRIKADELMKLYEGLSSKDKKL-- 167 Query: 178 LNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRT 237 L Q+A+K ++ K E Sbjct: 168 ----------------ESVLKENEELREQMAKKRSQNVKTRE---------------FHV 196 Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 +SE E+R ID L++AGW G N E TG + G+ Sbjct: 197 DTISEAETRKRYIDVALKEAGWVI---------------GRNVTEEEPVTGMPNSTGTGY 241 Query: 297 ADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 DYVL+ P+AVVEAK+ ++D ++ Y+ C N + R Sbjct: 242 VDYVLWGKDNLPLAVVEAKKASVDAMVGSQQAKLYADCLQNKYNRR-------------- 287 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 P + TNG E+ + D + + + Sbjct: 288 -------------------PLIFITNGFEF---------FYTNDYMG--YPRREVSGFFT 317 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 EEL L + + + ++ R YQ++AV AV AI +++L+ ATG+ Sbjct: 318 QEEL--QLEMDGRTSRIPLENIRISDDITNRPYQKEAVTAVCDAITNKHRKMLIVQATGS 375 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKTR +I+++ L + K ILFL DR++L +QA + + + N L + Sbjct: 376 GKTRVSISIVDVLRRHNYVKNILFLADRKALVKQAKNNYTNLLPDLSCCNL------LDN 429 Query: 536 KFPEDSTKIHVATVQSLV-----KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 K +S ++ +T +++ ++ ++ + I+ DE HR Sbjct: 430 KDDPESCRMIFSTYPTMMNAIDERKNKYGEKLFSPGHFQLIICDEVHRSI---------- 479 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAV 642 Y+ I ++FDA+ + +TATP +T +F G P + Y AV Sbjct: 480 ---------YKKYQEIFEYFDAMLLGMTATPKNEIDKNTYGVFDLERGVPTFAYELEKAV 530 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 +G+L++ + ++ + G++ + E+ + +D D N L Sbjct: 531 EEGYLVNYSTL-EYKSKIMESGIHYDELSDEEKEEYEDTFSDDD-TVGDDISGEAVNTWL 588 Query: 703 VIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 V EL KT++F + HA +V+ F K +P+ D Sbjct: 589 FNADTIDKVLRELMEKGLKIEGGDKLGKTIIFAKNSLHAQAIVKR----FNKLFPEYGGD 644 Query: 759 AIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 I +I D + ++I F+ +++P I V+VD+L TG+DIP I N+VF +KV+S Sbjct: 645 FIKRI----DYSIKYSDSLIDEFSTSDKMPQIAVSVDMLDTGIDIPEILNLVFFKKVKSY 700 Query: 818 ILYEQMKGRATRLCPEV-----NKTSFKIFDCVDIYSTL-----------------ESVD 855 + QM GR TRLCP + +K F IFD + + + + Sbjct: 701 AKFWQMIGRGTRLCPNLLGEGMDKERFLIFDFCNNFEYFRVNKNGAENGITESLNEKIYN 760 Query: 856 TMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGL------ 909 T +V + + + D + + + + +V + R + Sbjct: 761 TKAQIVRELQAPVYSGDEIYADYRKSLVDDLKEDVISLNDDSFMVKRHLRYVEFFRASSS 820 Query: 910 -ATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARL 968 I + + L ++ + + G S + + + + Sbjct: 821 WDNLETIEISDIREHIAPLIRPKKEDELARRFDYLVYSIDLGLLQSKSIQSPVNIVVQTA 880 Query: 969 EKLKTDINNLNDAPIFLDID--------DEVVSVKSL----------------------- 997 EKL + I+ D+V ++ Sbjct: 881 EKLSAKYSIPQVEKKKEIIEKVQTNEFWDKVTIIELDTVREALRGLLQYLDRQVRPIYYT 940 Query: 998 ---------------YGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVE 1042 YG D +++ + + ++ + + + LT L E Sbjct: 941 NFTDSITDGTPGEPLYGGND-LKNYRKKVEFYLKEHSDKLSVYKL--KNNKKLTETDLRE 997 Query: 1043 LQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKG 1102 L+ + + K + ET + +++G R A V+ A + Sbjct: 998 LERILWTELGSKEDYIKEYGETPIGRLVRKIVGVDRAA------------VNEAFSCFMS 1045 Query: 1103 ENDWSSEQLSWLDRLAQALKEKVVL-DDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKF 1161 E + Q+ +++ + + + D+ V F G L + ++ Sbjct: 1046 EERLNINQMRFVNLIVDYIVANGNIEDNKVLMGEPFKSVGSITTLFKDDMSTAKQIMEIV 1105 Query: 1162 SD 1163 + Sbjct: 1106 NQ 1107 >UniRef50_B8ECU5 Type III restriction protein res subunit n=5 Tax=Bacteria RepID=B8ECU5_SHEB2 Length = 1233 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 258/1287 (20%), Positives = 446/1287 (34%), Gaps = 265/1287 (20%) Query: 16 FTYAIACAAENNYPDDPNTTLIKMRMFGEATAK---HLGLLLNIP-PCENQHDLLRELGK 71 A A +AE N DP R E + + L P L+ + G Sbjct: 61 EILARAQSAEANIKSDPRIAGFYARNALELMVETVFDIDNRLKRPRHDATLMSLIHDQGF 120 Query: 72 IAFVDDNILSVFHKLRRIGNQAVHEYHNDL-NDAQMCLRLGFRLAVWYYRLVTKDYDFPV 130 + N+ + +IGN+AVH DA ++ + W+ R T D Sbjct: 121 KDNLASNLFPKLKLIIKIGNEAVHGKSTPPQRDALQAVKELHHVLYWFMRTYTPTLDKT- 179 Query: 131 PVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQ 190 F + E L Q++ + + + + Q+L ++ Sbjct: 180 -RFTIAPFDEALVPQKLAIDAGLVTKAISSIKRV--------QELEKQLAESDSIKRDDY 230 Query: 191 ETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESR-FLI 249 + + A L A L E+ A+ + + A + + +E E+R +LI Sbjct: 231 QQQLNENAALKAANQVLLEQIAKAKQSAD-------------AAQDNHDYNETETRDYLI 277 Query: 250 DAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVG-LKPI 308 DA L +AGW K R + P G DYVL+ + Sbjct: 278 DALLDEAGWPLKDKRDR-----------EYPVTTMPISDANPLGNGAVDYVLWGDDGTAL 326 Query: 309 AVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSG 368 AVVEAKR + ++ Y+ C + Sbjct: 327 AVVEAKRTSRRPEDGQQQAKLYADCLERQCGVR--------------------------- 359 Query: 369 KQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQ 428 P + +NG E + D D + + ++ +EL M+ Sbjct: 360 ------PIIFYSNGYET----------YLWD--DAFYPPRKVQGFYTKDELALMIKRRSD 401 Query: 429 KQNQWFADNPGM---------SELGLRYYQEDAVRAVEKAIV-KGQQEILLAMATGTGKT 478 + +F+D+ G E+ R+YQ+ A+ + + + Q+++LL MATGTGKT Sbjct: 402 RV-AFFSDDKGKGKKLTAQISEEITNRHYQKAAITHILQHFELEHQRKVLLVMATGTGKT 460 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP 538 RT I+++ L+++ K ILFL DR +L QA F + Sbjct: 461 RTVISLVDLLVKNDWIKNILFLADRNALLSQAKKNFVKLLPRVS-----CSVLSSGQSKD 515 Query: 539 EDSTKIHVATVQSLVKRTLQ--SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 ++++ AT ++ + D P V +D I+VDEAHR Sbjct: 516 SIDSRLYFATYPTMKNLLDRGADDRPFGVGHFDLIIVDEAHRSV---------------- 559 Query: 597 LDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDGFLI 648 S YR+I D+FD + + LTATP T IF G P Y Y +A + +L+ Sbjct: 560 ---YSKYRQIFDYFDGLLVGLTATPKDEVEKDTYGIFDLPKGMPTYAYEDASAYAEKYLV 616 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 I + T+ + GV + E++ + + L D ++ ++ N+ L Sbjct: 617 PP-TKISVATKFLRNGVKYQELSDEEKLEWENKA---ELTDREEVLPSEVNKFLFNEDTA 672 Query: 709 RAVCNELTNYLDPTG--------SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAI 760 + +L + + G KT++F N HA L F K YP+ Sbjct: 673 EKMFAQLMSKDELGGIHVEGGDVIGKTIIFAANNDHAVF----LEKIFNKNYPKWAGKLA 728 Query: 761 IKITGDADKDARKVQTM------ITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 IT + F+ K I ++VD+L TG+D+P + N+VF + Sbjct: 729 RVITFKETYAQSLIDEFGGEENNCKDFDPKNPTCRIAISVDMLDTGIDVPEVVNLVFFKV 788 Query: 814 VRSRILYEQMKGRATRLCPEV-----NKTSFKIFDCVDIYSTLESVDTMRPV-------- 860 VRS++ + QM GR TRLCP + +KT+FKIFD + ++ PV Sbjct: 789 VRSKVKFTQMVGRGTRLCPNLFGPGDDKTTFKIFDYCQNFEFFDANPEGLPVGITKPVMQ 848 Query: 861 -VVRPKVELQTLVNEITDSETYKITEADGRSFAEH----------------SHEQLVAKL 903 V +V+L TL+N +TY+ + + + + + Sbjct: 849 QVFEKRVQLSTLLNARLLDDTYRDKYPEDCELLRDLNNYQLDMLHHQVTGMNLDNFIVRP 908 Query: 904 QRI----------------------------IGLATFNRDRSETIDKQVRRLD------E 929 +R + ++ E ++ R D + Sbjct: 909 KRQKVEPFLERGFWDHIDDAKFTELESHVSALPTEADAFNQDEQVNNLSNRFDNLMLTMQ 968 Query: 930 LCQDAAGVNFNGFASRLREKGPHWSAE-------------------------VFNKLPGF 964 L G+ R+ E A+ L Sbjct: 969 LALLEKGMVPELSRQRVMEIAQQLEAKSTIPAVQAQLQLIQDIQVHEFWQDIHVTTLEDI 1028 Query: 965 IARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTP----QDFLEAFDSLVQRSPN 1020 RL L ++ ++ DEV V + Y P + + + +Q + Sbjct: 1029 RKRLRNLMFALDKDKKEVVYTQFVDEVQGVHDVTAVYQNPTMDLAQYRKKIELYIQDHQD 1088 Query: 1021 AQPALQAVINRPRDLTRKGLVELQ-EWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRR 1079 + N+P +T+ L L+ D + A++ ++ L IR+ Sbjct: 1089 QLTIQKLKRNKP--ITQADLDVLEGLLLDASGMSDIE---AYRHQILQE--KPLGTFIRQ 1141 Query: 1080 AAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHR 1139 VG L +E A + E +++EQ+++++++ L VLD F Sbjct: 1142 -LVGMDLNAAKE----AFSSFLDEGIYNAEQINFVNQVIDYLVNNGVLDMSHIFEPPFTD 1196 Query: 1140 RGGKAMLQRTFDD----NLDTLLGKFS 1162 G FD+ L ++ K + Sbjct: 1197 YHG-ESAYGFFDEGKVVELFGVIRKVN 1222 >UniRef50_A2TPW6 Type I restriction enzyme, R protein n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TPW6_9FLAO Length = 1168 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 215/991 (21%), Positives = 386/991 (38%), Gaps = 168/991 (16%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLG---LLLNIPPCE 60 SNF F++ V+ Y AE DP T+L RM E + L +P Sbjct: 2 SSNFSFIEAVDREIYDRCLTAERTAYTDPRTSLAHSRMALELAVYWIYNEDPNLTLPYRP 61 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 + + L++E G + ++N S +R +GN A+H D+ + + W Sbjct: 62 DLNLLMKERGFRSQFNNNFYSQIDSIRIVGNFAIHNRKVSEEDSLKIIDHLYYFLRWMAS 121 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 +P G ++ +++ K+ + R++ + +QQK+ Sbjct: 122 GYK----------EVPVAGLGIFEYDLIP-KEGADAISRKRIE-------EQQKMF---- 159 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEK---NAELAKQTEQERK--AYHKEITDQAIK 235 + + Q ++ A + AEK N L Q E+ +K A K++ Q I+ Sbjct: 160 ---------YQEIDKIQDKINAKDEAFAEKVKENEILRLQYEELKKSQALTKKVATQEIE 210 Query: 236 RTLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 + +E ++R ID LR+AGW D+ ++ + P D Sbjct: 211 KVNPTTEADTRKFFIDVLLREAGWDIDAPNVK-----------EFEVRGMPL-TDNPSGL 258 Query: 295 GFADYVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 G+ADYVL+ KP+AVVEAK+ I N++ Y+ C + + + Sbjct: 259 GYADYVLWDDNGKPLAVVEAKKTLISATQGENQAELYADCLEEMYGQR------------ 306 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEW 413 P Y TNG E T + ++ + + Sbjct: 307 ---------------------PVIYYTNGFE---TYLLDDCFY--------KSAREVFGF 334 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIV----------KG 463 + +EL ++ + Q P + R YQ A+R+V + Sbjct: 335 YTKKELQTIIWRRENR--QDIRAMPIDMAITDRPYQMRAIRSVAEHWAGSDTRTGQLIGT 392 Query: 464 QQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDT 523 + LL +ATGTGKTRTAI++ L+++ KRILFL DR SL +QA F + + T Sbjct: 393 NRRALLVLATGTGKTRTAISLSKILLEANWAKRILFLADRISLVKQAKRNFVNLLPDHST 452 Query: 524 FNSIFDIKGLTDKFPEDSTKIHVATVQSLV----KRTLQSDEPMPVARYDCIVVDEAHRG 579 N L + + + +I +T ++L+ + V +D I+VDEAHR Sbjct: 453 VN-------LIETKDDTNARIVFSTYKTLMGLIDSSRSEDGRFYGVGHFDLIIVDEAHRS 505 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFG----E 631 + Y+ I ++FD + + LTATP +T +FG Sbjct: 506 I-------------------YNKYQTIFEYFDGLFLGLTATPKGSIDHNTYDVFGLAKDN 546 Query: 632 PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND-TLEDD 690 P Y + AV FL + + ++G+ S+ + +++ + E + D Sbjct: 547 PTDAYDFDEAVAQKFLSPYKV-HDVPVKFLRKGIKYSELSEEDKLKFEDEFLEGRKASGD 605 Query: 691 QDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRA 746 + + + + L + + KT++F T HA+ + + L Sbjct: 606 EHIQKTELGKWLFNKPTAIKALSYFLKHGIKVNGGDEIGKTIIFARTQKHAEFLRDVLLE 665 Query: 747 AFKKKYPQLEHDAIIKITGDADKDARKVQTMITRF---NKERLPNIVVTVDLLTTGVDIP 803 ++++ + + IT K QT I RF K+ LP I ++VD++ TG+D P Sbjct: 666 MDREQF---GNKYVKVITNQTPK----AQTFIERFCEDKKDLLPQIAISVDMMDTGIDAP 718 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEV-----NKTSFKIFDCVDIYSTLESVDTMR 858 + N++F + V+S + QM GR +RL P++ +K F IFD + E Sbjct: 719 KVVNLIFYKPVKSYSKFWQMIGRGSRLSPDLFGPGEDKKEFLIFDLCQNFEFFEENPEGI 778 Query: 859 PVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSE 918 V+ + + L ++ ++ K + + + L+ +L + + L R Sbjct: 779 ESNVQIGITEKVLRLKLHLAQYLKEPQFEEKPEYITYRTNLLDELFQEVVLLDKTRFDVR 838 Query: 919 TIDKQVRRLDELCQDAAGVNFNGFASRLREK 949 KQV + + N + +++ Sbjct: 839 MKIKQVTDYGDGKRALWDHLDNKDITEIQDI 869 >UniRef50_UPI000196AC3A hypothetical protein CATMIT_00264 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AC3A Length = 1116 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 234/990 (23%), Positives = 378/990 (38%), Gaps = 199/990 (20%) Query: 2 MNKSNFEFLKG--VNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNI 56 M NF FLK + AE P I R E ++ L + Sbjct: 1 MVLLNFTFLKNKTEFQDFASTCIEAEKGLMVSPANCAILTRRALEQAVHYMYKNDIDLQM 60 Query: 57 PPCENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLN-DAQMCLRLGFRLA 115 P +N L+ E + I + +GN AVH +A + L +RL Sbjct: 61 PYRDNLSALVNEYTFKQIIPTEIYEGIRYVITLGNFAVHTSRKVKREEAVLALNNLYRLV 120 Query: 116 VWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKL 175 W DY +P F L Q + + + L++QVR+ Q E E +Q++ Sbjct: 121 NWMNYSYGIDYQEQLPEF----DPTKLPDQTHMFVNKDLKEQVRDILNKQKEKEEKQKEE 176 Query: 176 VALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIK 235 + A+L +N EL KQ +RK E Sbjct: 177 L----------------------------ARLVAENEELRKQGAAKRK----EDKAVEYV 204 Query: 236 RTLNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 + E +R L ID L++AGW D+ E+P T +Q Sbjct: 205 DVNKIPEWRTRKLYIDLMLKEAGWDFDTNVEE----------------EYPVHHMPTESQ 248 Query: 295 -GFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEV 352 GF DY+L K IAV+EAK+ ++D N++ Y+ C + + Sbjct: 249 DGFVDYILRGKTGKIIAVIEAKKTSVDPRVGRNQAKLYADCIEQEYGLR----------- 297 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 P + TNG E + IW D + + Sbjct: 298 ----------------------PVIFYTNGFE--------TFIWD----DMMYPDRKISS 323 Query: 413 WHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMA 472 +E ++ +++ + + RYYQ++A+ + KG ++ LL MA Sbjct: 324 IFSQDETQLLIDRRDTRRS--ISKPVIQDAITNRYYQKEAIVRTCEDFEKGSRKALLVMA 381 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKG 532 TG+GKTR AI+++ L ++ K ILFL DR +L QA F + + T N + Sbjct: 382 TGSGKTRVAISLVDVLTKADWAKNILFLADRTALVNQAKKNFVNLLPSLTTCNLCEN--- 438 Query: 533 LTDKFPEDSTKIHVATVQSLVK-----RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQT 587 K + +++ +T +++ R+ + +D I++DE+HR Sbjct: 439 ---KEDPEVSRMIFSTYPTMMNAIDETRSKDGNRLFTPGHFDLIILDESHRSV------- 488 Query: 588 EGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYR 639 + Y+ I D+FDA+ I LTATP +T IF G P Y Y Y Sbjct: 489 ------------YNKYKDIFDYFDALLIGLTATPKDSIGANTYSIFDLETGVPTYAYEYE 536 Query: 640 TAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFN 699 TAV D +L+ + + +EG+Y + + + + D+ +D N Sbjct: 537 TAVKDKYLVSYHS-YETKMKFLEEGIY-----YDDLSEEEKKEFEEHFPDEDKITSSDMN 590 Query: 700 RGLVIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQL 755 + + V +L + K+++F HA+ + E F YP+ Sbjct: 591 KFVFNINTIDTVIRDLMEHGIKIEGGDKIGKSIIFAANQNHANKIKER----FDILYPEY 646 Query: 756 EHDAIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKV 814 + IT + + VQ I RF+K + P I ++VD+L TG+D+P I N+VF +KV Sbjct: 647 KGKIAEVITFNT----KFVQNAIDRFSKTDSYPQIAISVDMLDTGIDVPDIVNLVFFKKV 702 Query: 815 RSRILYEQMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQ 869 RS+ + QM GR TRL P +K F IFD + V RP+ + Sbjct: 703 RSKAKFWQMIGRGTRLRKDLFGPGDDKKGFLIFDYLGNMDYFR-------VDQRPE---K 752 Query: 870 TLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDE 929 + + E YK+ R ++ EQ N+D + I+KQ++ + Sbjct: 753 SGIIESLSQRIYKL-----RVDILYALEQ-----------NASNQDYVDEINKQIKEMSG 796 Query: 930 LCQDAAGVNFNGFASRLREKGPHWSAEVFN 959 Q G+N + F +L K H N Sbjct: 797 YIQ---GLNEDSFNVKLHLKYVHQYKNPDN 823 >UniRef50_Q04L29 Type I restriction-modification system, R subunit, putative n=31 Tax=Streptococcus RepID=Q04L29_STRP2 Length = 1116 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 249/1269 (19%), Positives = 453/1269 (35%), Gaps = 272/1269 (21%) Query: 6 NFEFL--KGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGL---LLNIPPCE 60 NF FL + AEN T R E + L P Sbjct: 3 NFSFLLKNDEYESFSKPCIEAENMIATSTVATAFMARRALEQAVHWIYSHDSYLEAPYRA 62 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 L+ + VD + L R GN A H +A + L ++ + Sbjct: 63 TLSSLVWDDDFRDIVDSELHKQIVLLIRWGNHAAHGGEIKEREAILALHHLYQFVNFIDY 122 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 + FV E ++ Q + + + E+ +++ A + Sbjct: 123 CYSN-------EFVERYFDEKCLPLSANIKYRETPQSMIKLQDSLPELPDFHEQMAAQSV 175 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 + +++ET AQ Q ++ L Sbjct: 176 EVQETYTEKRETAAQRQDVPFHIDQ----------------------------------L 201 Query: 241 SEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 SE E+R L ID LR AGW F + R E V+ G G+ DY Sbjct: 202 SEAETRKLFIDIDLRLAGW-------IFEENCRVEIAVD--------GLKHGSGIGYCDY 246 Query: 300 VLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ K +A+VEAK+ +++ + Y++ + + Sbjct: 247 VLYGKNGKILAIVEAKKASVNPEVGEVQVKEYAEALEKHIGYQ----------------- 289 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P C+ TNG ++ + + ++ EE Sbjct: 290 ----------------PICFITNGLKHYILDGPN--------------RRQIAGFYSQEE 319 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 L ++ ++ + ++ R+YQ+ A+ +V +A +++ LL MATG GKT Sbjct: 320 LQLVMDRRHLQKPLEDISSKIRDDISGRHYQKHAIASVCEAFSNHRRQALLVMATGAGKT 379 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP 538 RTA++++ L + K +LFL DR SL +QA +F + N L DK Sbjct: 380 RTAVSLVDILSRHNWVKNVLFLADRTSLVKQAYDSFRKLLPDLSVCN------FLEDKEG 433 Query: 539 EDSTKIHVATVQSLVKRTLQSDE----PMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 S+++ +T +++ +E P V +D I++DE+HR Sbjct: 434 AQSSRMVFSTYPTMIGAISGQEEVNQRPFTVGHFDLIIIDESHRSI-------------- 479 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGF 646 Y+ I D+FDA + LTATP +T F G P Y Y AV DG+ Sbjct: 480 -----YQKYKSIFDYFDARIVGLTATPRQDLDKNTYGFFNLENGVPTYAYDLEEAVKDGY 534 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 L+ I+ + +G++ + E+ + +D+ E D D V FN + + Sbjct: 535 LVAYHS-IETKLKLPTDGLHYDDLSEEEKEHFDSKFEDDSCEKDIDGSV--FNSFVFNKS 591 Query: 707 FNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 V NEL T S KT++F + HA+ + R F +YP+ D Sbjct: 592 TVEIVLNELMTRGIQTASGDEIGKTIIFAKNHDHAEYI----RGIFNNRYPEKGSDYAQV 647 Query: 763 ITGDADKDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 I D + QT+I F +E+ P I ++VD+L TG+D+P + N+VF +KVRS+ + Sbjct: 648 I----DYSIKHYQTLIDDFKIEEKYPQIAISVDMLDTGIDVPEVVNLVFFKKVRSKTKFW 703 Query: 822 QMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEIT 876 QM GR TRLC PE +K +F +FD D + P + + +L + Sbjct: 704 QMIGRGTRLCKDLFGPEQDKENFLVFDYGDNFDYF----RADPRDGEGRH-IVSLTQRLF 758 Query: 877 DSETYKITEADGRSFAEHS-----HEQLVAKLQ------------------------RII 907 + + I E G + E +QLV++LQ ++ Sbjct: 759 NIKVDLIRELQGLQYQEDQFARAYRQQLVSELQGRIESLNELDFRVRMVLDTVYSYRKLE 818 Query: 908 GLATFNRDRSETIDKQVRRL--DELCQDAAGVNFNGFASRLR------------------ 947 SETI K + L DE +D F+ + ++ Sbjct: 819 SWQNLTAVTSETIQKNLSPLLFDEDKEDEMARRFDLWLLHIQLGQLTAKSSTVHISQVMK 878 Query: 948 ------------------------EKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPI 983 ++ W + L + L ++ + P Sbjct: 879 TARALSAIGNIPQVFEQAEIIRKVQEPEFWKEVNLSDLEKIRLAIRDLLQFLDKTDRKPY 938 Query: 984 FLDIDDEVVSV---KSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGL 1040 +++++D ++S + + + + + E + ++ + + + N + LT + Sbjct: 939 YVNLEDRILSTVHETTAFLQVNDLRSYNEKVEHYLKTHLDEESISKLYHN--KKLTSDDM 996 Query: 1041 VELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRI 1100 + L++ + ++ + ++ + +IG R +A + ++ Sbjct: 997 LALEKLLWEKLGSKADYQSHYENKAIPRLVREIIGLDRESA------------NRIFSKF 1044 Query: 1101 KGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLD----- 1155 + + ++ Q+S++ + + E L+ V F G +Q F L Sbjct: 1045 LSDENLNARQISFVKLIVDYIVENGFLETKVLTQEPFKSYG---SVQLLFQHQLPVLRNI 1101 Query: 1156 -TLLGKFSD 1163 ++ ++ Sbjct: 1102 VQIIELINN 1110 >UniRef50_D1C5W5 Type III restriction protein res subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5W5_SPHTD Length = 947 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 234/1024 (22%), Positives = 388/1024 (37%), Gaps = 175/1024 (17%) Query: 238 LNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 + E +R IDA L KAGW + AR A+ E P G A Sbjct: 1 MPTPETRARADIDAALDKAGWAVQDRYAVNLAAAR-----GVAVREVPL----KPGHGVA 51 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY+LFV + V+EAKR + ++ +Y Sbjct: 52 DYLLFVDGLAVGVIEAKRVGTTLTGVEPQTAKYGAGL----------------------- 88 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 D +PF Y + E R + + D S+ + +HRPE Sbjct: 89 ------PDYLDTLVKPLPFLYQSTSIETR----------FTNGLDPEPRSRRVFSFHRPE 132 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYY-----------------------QEDAVR 454 L + P Q + +E RY QE AVR Sbjct: 133 TLAAWISGTPPAQAAVASPILRAAEDPARYQAVTTLRARLQKMPRLDPGRLWPAQEQAVR 192 Query: 455 AVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAF 514 +E+++ + L+ M G+GKT TAI ++RLI+ +RILFLVDR +LG QA F Sbjct: 193 NLERSLADDRPRALIQMTMGSGKTYTAITAIYRLIKYADAQRILFLVDRANLGTQAKKEF 252 Query: 515 EDTRINGD--TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE----------- 561 + D TF +++++ L + + ++ + T+Q L E Sbjct: 253 DAYVPPDDRRTFTQLYNVQHLKTNRIDPTARVVITTIQRLYSILKGEPELDPSLEEGSHF 312 Query: 562 -----------------PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYR 604 +P+ +D IV+DE HR + +R Sbjct: 313 DTASGLVPEPVPVVYNPDVPIETFDFIVIDECHRSI-------------------YNLWR 353 Query: 605 RILDHFDAVKIALTATPALHTVQIFGEP-VYRYTYRTAVIDGFLIDQDPPIQIITRNAQE 663 ++L++FDA I LTATP+ T F + V Y+Y AV DG +D D +I TR + Sbjct: 354 QVLEYFDAYLIGLTATPSKQTFGFFNQNLVMEYSYPQAVADGVNVDHDI-YRIRTRITES 412 Query: 664 GVYLSKGEQVERISP-QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL--- 719 G + G VE+ + L++D ++ AD +R +V P R V + L Sbjct: 413 GSTIEAGMYVEKRDRLTRAARWEQLDEDLAYDAADLDRAVVAPDQIRTVIRTFRDRLFTE 472 Query: 720 ---DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQT 776 + KTL++ +AHA+ +V+ +R F K +D KIT + + Sbjct: 473 IFPGRSHVPKTLIYAKDDAHAEEIVQIVREEFGK-----GNDFCQKITYKT--TGVRPED 525 Query: 777 MITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN- 835 +I F P I VTVD++ TG DI I ++F+R V+SR +EQMKGR R+ E Sbjct: 526 LIQSFRISYNPRIAVTVDMIATGTDIKPIEIVMFMRAVKSRTFFEQMKGRGVRVIDETEF 585 Query: 836 ---------KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEA 886 KT F + DCV + + + P+ P V +TL+ + + + Sbjct: 586 KAVTPDAERKTRFVLIDCVGVTERM--LSDSPPLERAPTVSFETLLQRVAFGSLDRDLLS 643 Query: 887 DGRSFAEHSHEQL----VAKLQRIIGLATFNRDRSETIDK-QVRRLDELCQDAAGVNFNG 941 S QL A+L G T ID R E + G+ Sbjct: 644 SLASRLARLDRQLGAPDKARLAECAGGHTLQDIARGIIDALDPDRQVEAARTMFGLPPGE 703 Query: 942 FASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDA---PIFLDIDDEVVSVKSLY 998 + E+ + E+ + IA L+ + +L I + D ++ Sbjct: 704 DPT--PEQLEQATRELLRQAAAPIATNPDLREQLVSLRRHYEQTIDVVSKDSLLEAGFDA 761 Query: 999 GDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRP--RDLTRKGLVELQEWFDRQ--HFEE 1054 + ++ +F+ + + ALQ + +RP + L + L + + Sbjct: 762 QARERARELTTSFEQFIIEHKDEITALQVLYSRPYGQRLRFADIKALADAIQAPPRQWTT 821 Query: 1055 SSLRKAWKETRNEDI-------AARLIGHIRRAA-VGDALKPFEERVDHALTRIKGE--- 1103 L +A++ + ++ +R A + L PFEE+V+ + Sbjct: 822 DRLWQAYETLDKSRVRGSGMRRLTDVVSLVRFALHQEEELIPFEEQVEARFDAWLAQQAA 881 Query: 1104 --NDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKF 1161 +++ EQ WL+ + + ++ D F F + GG + F + TLL + Sbjct: 882 LGREFTEEQRRWLEWIRDHIVASYTIELDAFDYAPFAQHGGLGRFYQLFGSDWRTLLDEL 941 Query: 1162 SDYI 1165 ++ + Sbjct: 942 NEVL 945 >UniRef50_C2CT05 Type I site-specific deoxyribonuclease n=3 Tax=Corynebacterium RepID=C2CT05_CORST Length = 1212 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 243/1307 (18%), Positives = 437/1307 (33%), Gaps = 269/1307 (20%) Query: 11 KGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE--NQHDLLRE 68 + V Y E DP + R E H+ ++ + ++ R+ Sbjct: 2 RYVWPTAYEECLKVERFVDADPVISCFYARKVLERVVNHIWAFRSLGDTGYLSLAEMTRD 61 Query: 69 LGKIAFV-DDNILSVFHKLRRIGNQAVH----EYH---NDLNDAQMCLRLGFRLAVWYYR 120 G + V ++ +L LR+ GN A H E A+ + + L W R Sbjct: 62 RGFLQCVKNETMLRKMTILRKSGNDAAHADDMEGKQAPATSQKARAVVAHLYDLMAWAVR 121 Query: 121 LVTKDYDFPVPVFVLPERG--------------ENLYHQEVLTLKQQLEQQVREKAQTQA 166 + + + + ++L QQ E + + Sbjct: 122 YHSANPKAAPGPQATFDTSLLGQSAADASGIHVAGRSQAQTAAYLKKLAQQDEELKKNRL 181 Query: 167 EVEAQQQKLVALN----GYIAILEGKQQETEAQTQARLAA--------------LEAQLA 208 ++ ++ A E K++ E + +A LA +E +LA Sbjct: 182 LLDEAKEAAREAEEKRLREAAQFELKRRSAELRAKADLADAKEQAEAERAAAQQVEEKLA 241 Query: 209 EKNAELAKQTEQERKAYHKEITDQAIKR-TLNLSEEESRF-LIDAQLRKAGWQADSKTLR 266 K L + ++ A + A L + E E+R LID L AG+ DS T Sbjct: 242 AKIEALEAKLAEQEAAAAERAGAGAQPDAPLAIGEAETRRQLIDPMLEVAGFSGDSVTRE 301 Query: 267 FSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLN 325 P P G+ADYVL+ P+AV+EAK++ + + Sbjct: 302 LELHGMPNP----------------SGVGYADYVLWDDDRTPLAVIEAKKSMESMSVGSH 345 Query: 326 ESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREY 385 + Y+ C + + P TNG Sbjct: 346 QVKLYADCIEREYGTR---------------------------------PVMLCTNGYHI 372 Query: 386 RATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSEL-- 443 + ++ + + ++L M+G + ++ P +E+ Sbjct: 373 DLIDDAAN----LPGTGVGYPAREVEGFPTAQQLRRMIGRRTMRA--LLSETPVDTEIAG 426 Query: 444 -GLRYYQEDAVRAVEKAIVKGQQE-ILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLV 501 G R YQ +A+RAV + + ++ LL MATGTGKTR A+A L Q+ ++LFL Sbjct: 427 GGARTYQLEAIRAVTETLEARRRRQALLVMATGTGKTRVAVATARLLRQAGWVGKVLFLA 486 Query: 502 DRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE 561 DR +L QA AF N I K PE ++V T +++ + Sbjct: 487 DRTALVNQAHKAFVSMYAESTPVNLI--------KNPEQVGDVYVTTYNTMMNLIGDDGD 538 Query: 562 ---PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALT 618 +D I+VDEAHR + ++RIL++FDA + LT Sbjct: 539 TPAKFGPFDFDLIIVDEAHRSV-------------------YNRFKRILEYFDAYVVGLT 579 Query: 619 ATPA----LHTVQIFG----EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKG 670 ATP T +F P + Y+ AV DG L+ Q+ ++L +G Sbjct: 580 ATPKSEIDHDTYALFEMEDKTPSFEYSLDEAVADGNLVP-------FKTARQDSLFLRRG 632 Query: 671 EQVERISPQGEVINDTLEDDQD-----------FEVADFNRGLVIPAFNRAVCNELTNYL 719 + +SP+ ++ DT + D A+ NR L R V + Sbjct: 633 MSYDELSPEEQLAWDTSDWGTDEDGGRLDPPGQVSSAEINRYLFNKDTIRKVLKTVVENG 692 Query: 720 DPTGS---QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQT 776 G KT++F T HA+++ + F +P+ IT + Q+ Sbjct: 693 IRVGGDQLGKTIIFARTQRHAELI----KQVFDATFPEYSRTGASVIT----THTKYAQS 744 Query: 777 MITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV- 834 + F + + NI ++VD+L TGVD+P + N+VF + V S + QM GR TRL P++ Sbjct: 745 ALDDFADPDGDVNIAISVDMLDTGVDVPEVVNLVFFKPVYSPTKFWQMVGRGTRLRPDLF 804 Query: 835 ----NKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNE---------------- 874 +KT F IFD + RP+ + L + Sbjct: 805 GPGMDKTHFLIFDFCGNVDEFFKGEARESATGRPRSLSEKLFDARVGLLAQLDKHAKAPE 864 Query: 875 -----ITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRR--L 927 + G ++++ + + + +++E + + + L Sbjct: 865 MRAGLADSLHASAASVPLGHIMVRPGDKEILVRYRERSAWNDVDEEKAEQLSRHLGHLPL 924 Query: 928 DELCQDAAGVNFNGFASRLR----EKGPHWS---------AEVFNKLPGFIARLEKLKTD 974 + + + F+ +L+ + P ++ A + I + + ++ Sbjct: 925 NTMKEAETAKRFDLVILKLQVGLLDHSPEFAALRQRVERMANDLMAVSSTIPMVAERRSF 984 Query: 975 INNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLV---------QRSPNAQPAL 1025 + D + ++ E + + + + V + L Sbjct: 985 LERALDPEWWTNVTVEDLETIRIG---------MRSLIQFVPKGKRNAVTLDIQDEMGEL 1035 Query: 1026 QAVINRPRDLT---------RKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAA----- 1071 P L + L E+ + LR A + ED+AA Sbjct: 1036 TIDDEMPSQLPGTGSYPSQLEQQLREVLQEHAND-LAMIKLRSA-RTLNAEDVAALEAVV 1093 Query: 1072 -----------RLIGHIRRAAVGDALKPFEER--------VDHALTRIKGENDWSSEQLS 1112 I +R GD++ F R V + +++ Q+ Sbjct: 1094 AQVGRGSGGFTESIDKLRERMGGDSIPAFIRRLVGLDEAAVREQFADLLSNTSFNAAQIR 1153 Query: 1113 WLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLG 1159 ++ L L + + F G + F + D ++ Sbjct: 1154 FIKMLVDVLVHNGGVAYEEIFQPPFDEEGSVVDI---FHNKTDVIVD 1197 >UniRef50_B3CDF9 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CDF9_9BACE Length = 1116 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 234/1089 (21%), Positives = 402/1089 (36%), Gaps = 200/1089 (18%) Query: 6 NFEFLKGVN--DFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLN--IPPCEN 61 NF+ +K ++ Y AE+ +P + + R+ E K + L I + Sbjct: 3 NFDIIKDIDGLRTIYRYCATAEDFQVANPMVSATQARLALETMVKTVYRLKGWQIGERAS 62 Query: 62 QHDLLRELGKIAFVD-DNILSVFHKLRRIGNQAVH--EYHNDLNDAQMCLRLGFRLAVWY 118 L + AF+D ++++ H +R+IGN A H + ++ + + + Sbjct: 63 LLSLTTDERFTAFIDSEDLMKRIHYVRKIGNNAAHASDGFVGRRESFFAVLNLYYII--- 119 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 G L +V+ ++++ ++ + + Q A Sbjct: 120 --------------------GSILLAWQVIDTLPDFDKELIPQSPQPSNLAVVPQTEQAS 159 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL 238 + + + + + A+ ++AQ Sbjct: 160 SATTQTADTAAKAVKESSDAQPTTVDAQ----------------------------PVVN 191 Query: 239 NLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 +LSE E+R L ID L +A W+ + G+ + P G+A Sbjct: 192 DLSEAETRKLYIDLLLHEADWKVSEHKGEI---IPRQAGIEIEVQGMP----NESGVGYA 244 Query: 298 DYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DYVLF P+AVVEAKR ++D +++ Y+ C + Sbjct: 245 DYVLFDADGTPLAVVEAKRTSVDATVGRHQAELYADCLATRYTCSR-------------- 290 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 P Y TNG E GI Y S+ + +H Sbjct: 291 ------------------PVIYYTNGFETHLI----DGIGY--------PSRKVMGFHTI 320 Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 +EL M+ Q+ D ++ R YQ+ + +V K + LL MATGTG Sbjct: 321 DELRRMIA---QRGRNDITDLQISDKITNRNYQKRVIESVCKHYNDKHRRALLVMATGTG 377 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK 536 KTR +I+++ L+++ K +LFL DR L QA N + L D Sbjct: 378 KTRVSISLVDVLVRNNWVKNVLFLADRIELVNQAKKNDTKLLPN-------MTVSSLRDS 430 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 + S +I +T Q+++ + + + R+D I++DEAHR Sbjct: 431 DVDISARILFSTYQTMIGHLDRDAKTFSLGRFDLIIIDEAHRSVF--------------- 475 Query: 597 LDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFLI 648 Y I ++FD + + LTATP T +F GEP Y Y AV DG+L Sbjct: 476 ----GKYGAIFEYFDCLLLGLTATPRDEVDRSTYDLFGMEQGEPTDSYEYDEAVADGYLN 531 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERISP----QGEVINDTLEDDQDFEVADFNRGLVI 704 I+ ++ G+ + ER + E + LE D + + Sbjct: 532 PFRA-IKDNSKILTTGIDPEQLTPEERKQLEEIFEYEKMKAGLEPDDPYSRTINATEIFK 590 Query: 705 PAFNRAVCNELTNYLDPTGSQ--------KTLVFCVTNAHADMVVEELRAAFKKKYPQLE 756 FN+ + + N L G + KT++F + HA + E F YP L Sbjct: 591 YIFNQNTVDHVLNRLMNDGIRVKDNTLIGKTIIFAYNHKHAVFIAER----FAALYPDLG 646 Query: 757 HDAIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVR 815 D I D + ++ +F + P I V+VD+L TG+D+P I N+VF + + Sbjct: 647 SDFCRVI----DNYEKYSSDLLDKFADVSKQPQIAVSVDMLDTGIDVPEIVNLVFFKPIH 702 Query: 816 SRILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQT 870 S+I + QM GR TRLC +K F IFD + E M P RP Q+ Sbjct: 703 SKIKFWQMIGRGTRLCENLFGEGQHKKEFLIFDFYRNFEYFE----MHPEGARPTKS-QS 757 Query: 871 LVNEITDSET-YKITEADGRSFAEHSHEQLVAKLQRIIG--LATFNRDRSETIDKQVRRL 927 +V+ I + T K DG+ + + L I+ +A NR+R + Q+R + Sbjct: 758 IVSLIFNLRTDIKFALQDGKYQSNEEAKAFHNDLADILHQQIAALNRNRIDVRL-QLRAV 816 Query: 928 DELCQDAA--------GVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLN 979 + A + S L + ++ + ++L + +N+ + Sbjct: 817 ETYANPEAMTCLTLGDAMAMKSNISPLLKNATTDTSALKLDALVLKSQLALVDETVNSTS 876 Query: 980 DAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKG 1039 +DI + K+ D L+ ++ +L ++ + RK Sbjct: 877 SERKIMDIAAYLKEKKASIPQVMAKMDVLD---EVLSPHFWESKSLGSL-----ERIRKE 928 Query: 1040 LVELQEWFD 1048 L EL ++ D Sbjct: 929 LRELIQYLD 937 >UniRef50_A5KNP7 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KNP7_9FIRM Length = 1130 Score = 472 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 243/1241 (19%), Positives = 433/1241 (34%), Gaps = 247/1241 (19%) Query: 4 KSNFEFLKGVND-FTYAIACA-AENNYPDDPNTTLIKMRMFGEATAKHLG----LLLNIP 57 + NF FL+ + ++ AC AE P + + R E K + L I Sbjct: 2 EMNFAFLEKKQEYELFSGACIDAERILESSPVMSAVASRKALELCVKWIYSIDSALEPIG 61 Query: 58 PCENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLND-AQMCLRLGFRLAV 116 E LL G + +D + + R GN++VH D A + L + F Sbjct: 62 NREGLQSLLHNNGFPSLMDITLWRRLQHIVRNGNESVHTSKRLTRDNAVLSLNILFDFVE 121 Query: 117 WYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLV 176 W +DY VF + + + + Q+ +QV + Q A Sbjct: 122 WVDYCYGRDY--VERVFDEKKIPDATTD---MNVVQEEYRQVIKDVQKNA---------- 166 Query: 177 ALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR 236 + E + + + LA + E + A+ + Y Sbjct: 167 ---------DKIVNEKDKEIERLLALNKELRNEMKVQKARNIKNREYVYEP--------- 208 Query: 237 TLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGNQ 294 +LSE +R IDA L G+ D + N E+P G + Sbjct: 209 --DLSEWTTRKRYIDADLEANGYVFDQ-----------DKKRNCVEVEYPVVGMPNQTGR 255 Query: 295 GFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 G+ DYV++ K IAVVEAK+ + N+ Y+ C N + Sbjct: 256 GYVDYVIWGDTGKIIAVVEAKKASESGDKGRNQGKLYADCIQNMQGKR------------ 303 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEW 413 P + TNG E + D D + + + Sbjct: 304 ---------------------PIIFYTNGFET----------YLWD--DANSAPRLVSGI 330 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 +++ M+ K++ ++ R+YQ AV + KG ++ LL MAT Sbjct: 331 FPQKDINAMIERRCIKKS--VNSIQIDKQITDRWYQLRAVTKCCENYEKGIRKCLLVMAT 388 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGL 533 GTGKTRTA +++ + +S+ ++LFL DR+ L +QA AF N N + + Sbjct: 389 GTGKTRTAASIVDVMTRSELMGKVLFLADRKELVKQAKDAFYKYIENTTMCNLLLN---- 444 Query: 534 TDKFPEDSTKIHVATVQSLVK-----RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTE 588 E + KI +T Q+++ + + IV+DEAHR Sbjct: 445 ---KDERNAKIIFSTYQTMLHAIDTIKNADGSRFFSPGHFSLIVIDEAHRSIF------- 494 Query: 589 GELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFGE----PVYRYTYRT 640 + Y+ I +FDA + LTATP T F P Y Y Sbjct: 495 ------------NKYKAIFQYFDACLLGLTATPKNTIHQSTYTFFDMKNNIPTDVYEYEE 542 Query: 641 AVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNR 700 AV ++ I+ T+ + +G+ + ++ ER + + E + D + N+ Sbjct: 543 AVEKDHVLVPFYLIETSTQISDDGITYADLDEEEREAYEAEFVEDGGVPEH-IPPERINK 601 Query: 701 GLVIPAFNRAVCNELTN----YLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLE 756 + + ++L N + + KT++F HA +V+ F + YPQ + Sbjct: 602 YIFNVDTVDRMISDLMNNGIRHKNGNHVGKTIIFAQNKLHAKFIVDR----FNELYPQYK 657 Query: 757 HDAIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVR 815 + + D + + F K + P I VTVD+L TG+D+P I N+VF +KV Sbjct: 658 GNFCKLVVCDEPYAGQN----LKDFKKADDYPFITVTVDMLETGIDVPEITNLVFAKKVY 713 Query: 816 SRILYEQMKGRATRLCPEV-----NKTSFKIFDCVDIYSTLESVDTMRPV------VVRP 864 SRI +EQM GR TRLC + +K F +FD + + + R V Sbjct: 714 SRIKFEQMLGRGTRLCENLFGEGEDKKEFVVFDYMRNFQFFDEHPKGREAGEVVAPVAAR 773 Query: 865 KVELQTLVNEITDSETYKITEADGRS-FAEHSHEQLVAK-----------------LQRI 906 + + ++ + D+ + + R +H + + A +R Sbjct: 774 FIRMVQMIKCLQDANYVDVKYQNIRENLIDHVVDDVKAMGTERVEVRLELRYVERYKERK 833 Query: 907 IGLATFNRDRSETIDKQVRRLDELCQDAAGVNFN--------------GFASRLREKGPH 952 + E ID + + +D A ++F+ RL+ Sbjct: 834 QYECLEEIHKEEIIDHLAKLVVSDEKDEAAISFDVLMYGLMLSVMTGGKNLGRLKRYVVG 893 Query: 953 WSAEVFNK---LPGFIARLEKLKTD-----------INNLNDAPIFLDI----------- 987 + + + +P R+ +LK + +I Sbjct: 894 NANILLKECATIPDIKVRISELKELVSDHYWDVQDVLKFEETRKSLREIMKYIPAKKEKL 953 Query: 988 -----DDEVVSVKSLYGDYDTP---QDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKG 1039 D VV + + +D+ + V+ + + N P ++ + Sbjct: 954 HYSNFKDIVVFREEGRLTSLSASDFEDYRAKVNEYVEAHKTTPAINKLLHNEP--ISVED 1011 Query: 1040 LVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTR 1099 EL+ F + +++T + ++ R AA A + Sbjct: 1012 YNELERIFTVELGTAEDYEMNYQDTPFGLLIRKIAKMDRTAAY------------AAFST 1059 Query: 1100 IKGENDWSSEQLSWLDRLAQALKEKVVLDDD-VFKTGNFHR 1139 E ++EQL +++++ + E +++ F R Sbjct: 1060 FILEERPNTEQLHFIEQVVDYVVENGYINNVLDLMKTPFDR 1100 >UniRef50_B0URP6 Type III restriction protein res subunit n=7 Tax=Bacteria RepID=B0URP6_HAES2 Length = 946 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 214/1017 (21%), Positives = 387/1017 (38%), Gaps = 179/1017 (17%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E++++ +ID +L +AGW + K P G+ A+ E+PTG G DY+ Sbjct: 11 PEQQTKDIIDEKLIQAGWLIQT-----VKAYNPNAGLGIAVREYPTG------TGPVDYL 59 Query: 301 LFVGLKPIAVVEAKRNN--IDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 LFV +P+A++EAK+ N + +S RY+K Sbjct: 60 LFVDREPVAIIEAKQENFAYKLNTIEEQSARYAK-------------------------- 93 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 + + I F Y + G R + + D ++ + +HRPE Sbjct: 94 -----SELKNIAQADIAFLYESTGTITR----------FTNCNDPTPRAREVFNFHRPET 138 Query: 419 LLEMLGSEPQKQNQWFADNPGMS-------ELGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 L + P ++ EL LR Q A+ ++ ++ K L+ M Sbjct: 139 LQKWATEGKNTLRAKLKALPVLNPQNLPACELNLRDCQLTAIENIQTSLAKDLPRALIQM 198 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDT--FNSIFD 529 ATG GKT TAI +M+RL++ +RILFLVD +LGEQA D F +++ Sbjct: 199 ATGAGKTYTAINIMYRLLKYTGKRRILFLVDTVNLGEQAEQEMLVFTPPDDNRKFTELYN 258 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSD--------------------------EPM 563 + + ++ + T+Q + D + Sbjct: 259 TQVIKSPHIPKGVEVCICTIQRMYSLLKGEDVAIPDDSVELEEWENRLKEPLSVAYQPNL 318 Query: 564 PVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPAL 623 P +D I +DE HR + +R++LD+FDA I LTATP Sbjct: 319 PPEFFDFIFIDECHRSI-------------------YNLWRQVLDYFDAYLIGLTATPDN 359 Query: 624 HTVQIFGEP-VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEV 682 T F + V Y++ AV DG + + I T+ + +G E VE Sbjct: 360 RTFGFFNQNVVSEYSHEQAVADGVNVGNEV-FLINTKISIQGGKFKAEELVEYRERTTRR 418 Query: 683 I-NDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL-----DPTGSQKTLVFCVTNAH 736 + D+ + +R +V P+ R + ++L + KTL+F ++H Sbjct: 419 KRWQQQDTDESYTAKQLDRDIVNPSQIRTIIRTFRDHLPIIFPNRQEVPKTLIFAQNDSH 478 Query: 737 ADMVVEELRAAFK------KKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIV 790 AD +++ +R F KK D I+ GD + + +T++ F P I Sbjct: 479 ADDIIKMVREEFGQGNEFCKKITYKAKDDILDENGDIVEQGEEPKTILANFRNSYHPRIA 538 Query: 791 VTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN-----------KTSF 839 VTVD++ TG D+ + ++F+R V+SR +EQMKGR TR + KT + Sbjct: 539 VTVDMIATGTDVRPLECLLFMRDVKSRNYFEQMKGRGTRTLDKDGLQKVSPPAPSAKTHY 598 Query: 840 KIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRS--------F 891 I D + + +L++ + + V L + + + + Sbjct: 599 VIVDAIGVTKSLKTSSI--QLDTKRSVSFAELGRAVVFGGAFDMDSISSLACRLSRLDKQ 656 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP 951 +Q ++++ + L+ +D I+ + + + G++ + S E+ Sbjct: 657 LSQDEQQQISEILGGVALSQVVKDLFHAINAD--EIHKHACEQEGISLDETPS---EETL 711 Query: 952 HWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDID-DEVVSVKSLYGDYDTPQDFLEA 1010 + + +E + +D + DEV V + + + Sbjct: 712 LKVQKQRVRTATKTLSMELITALDEIRKQHEQKIDHELDEVTHVGW----AENDEAITQN 767 Query: 1011 FDSLVQRSPNAQPALQAVINRP---RDLTRKGLVEL--QEWFDRQHFEESSLRKAW---- 1061 F + + ALQ N+P + T + EL + S + +A+ Sbjct: 768 FADWINEHKDGITALQIFYNQPYQRQAFTLAMIKELANAIKKAKPKLAFSHIWQAYARLD 827 Query: 1062 ---KETRNEDIAARLIGHIRR-AAVGDALKPFEERVDHALTRI------KGENDWSSEQL 1111 ++ +NE A L+G IRR + + + PF V + + + + EQ+ Sbjct: 828 QVSEQKQNELTA--LVGLIRRVVGIDNKITPFAHIVRKNFQKWTFEHNARADKKLTEEQM 885 Query: 1112 SWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTF-----DDNLDTLLGKFSD 1163 +WL + + + + D F+ F++ GG +D+ D LL + + Sbjct: 886 AWLAMIKEHIITSFSIKSDDFELTPFNQHGGLGQAYDVLCGITQNDDFDALLDEINQ 942 >UniRef50_Q7VGA4 Putative uncharacterized protein n=1 Tax=Helicobacter hepaticus RepID=Q7VGA4_HELHP Length = 906 Score = 451 bits (1159), Expect = e-125, Method: Composition-based stats. Identities = 206/994 (20%), Positives = 393/994 (39%), Gaps = 156/994 (15%) Query: 238 LNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 ++ E+++R ID L AG++ + P N AI E+ A Sbjct: 1 MDKPEQKAREEIDKLLSLAGFELRDFKDYALGDSTPNAARNLAIKEFILKNGT-----RA 55 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY+LFV K V+EAK+ ++ + N++ Y+ + Sbjct: 56 DYILFVAGKACGVIEAKKISLSLSGAENQAKNYAYTLPAHIPSFQGM------------- 102 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 +PF Y +N E I++ D+R+ ++ + +H P+ Sbjct: 103 ----------------LPFVYVSNASE----------IYFTDLREPNPRARRIFAFHTPK 136 Query: 418 ELLEMLGSEPQKQN-QWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 ELLE L S+ ++ + LR Q++A+ +EK++ + +Q L+ MATG G Sbjct: 137 ELLEKLNSDSLRERIRHIPPLSSQDSKKLRDCQKEAIEGLEKSLKQNKQRALIQMATGAG 196 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDT--FNSIFDIKGLT 534 KT TA +RL+ + KRILFLVDR +LG+QA F++ + D F+ I+++ L Sbjct: 197 KTFTACNFAYRLLSIAKAKRILFLVDRNNLGKQAKKEFDNFSPSADKRHFSEIYNVVHLE 256 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDE-------------------------PMPVARYD 569 +K+ + T+Q L E + + +D Sbjct: 257 TNHILTESKVVITTIQRLYSILRGESEFDSANEEHSAFENEDKETKEVAYNPKIGIDTFD 316 Query: 570 CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIF 629 IV+DE HR +R++L++FDA I L+ATP+ HT+ F Sbjct: 317 FIVIDECHRSI-------------------YGLWRQVLEYFDAFLIGLSATPSKHTLGFF 357 Query: 630 GEPVY-RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE---RISPQGEVIND 685 + V +Y +++D + + +I TR +++G + + + R ++ + Sbjct: 358 AQNVVAQYDLEKSILDKVNVGYEI-FRIKTRISEQGSIIEANAEFQIPFRDKDTRKIGYE 416 Query: 686 TLEDDQDFEVADFNRGLVIPAFNRAVCNELTNY--------LDPTGSQKTLVFCVTNAHA 737 +LE+D ++ AD +R ++ P+ R + N + + KTL+F + HA Sbjct: 417 SLEEDLEYSKADLDRSVLAPSQIRTILETYKNKVFDLLFPERERSYLPKTLIFAKDDNHA 476 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 + +V R F +++ KIT + + +I F + I VTVD++ Sbjct: 477 EEIVRLAREVFNA-----DNEFAQKITYNIGN--QNPHELINAFRHSKKFRIAVTVDMIA 529 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN----------KTSFKIFDCVDI 847 TG DI + ++F+R V+S Y QM GR R + KT F + D V + Sbjct: 530 TGTDIKPLEVLIFMRDVKSASYYAQMVGRGVRSIHNDDLRAVTPNADCKTRFYVIDAVGV 589 Query: 848 YSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII 907 + + +D+ RP+ + ++ L+ ++ ++ +S + D +L L + Sbjct: 590 SES-QKIDS-RPLERKKRLSLKEILQQVRESVAKGEYDKDALLSLASRLTRLELSLSKED 647 Query: 908 GLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIAR 967 + + ++++ + + + A ++ + F KL + Sbjct: 648 NASLQELNSNKSLCALAKEILAFADSLQALERAEVA---HNPLEIFTNDTFCKL--LLEL 702 Query: 968 LEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 +K K I+ ++ + D Q+ + F+ + + + AL Sbjct: 703 AKKSKIYIDEISQDSVLSAEFDT-----------QKAQNLIAQFNEFILQHKDEITALSI 751 Query: 1028 VINR---PRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDI-------AARLIGHI 1077 + ++ R LT + + EL + + SL A+K + LI + Sbjct: 752 IYSQNYKNRHLTYEVIAELAHKLKQDSMDIPSLWNAYKLRDKGKVSKNPSKNLTNLISLV 811 Query: 1078 RRAAVGDA-LKPFEERVDHALTRIKG-----ENDWSSEQLSWLDRLAQALKEKVVLDDDV 1131 R A D L+ F + +G +S EQ ++L+ + + + + Sbjct: 812 RYALKMDTELQDFAIGANARYNLWRGRCKKKGIAFSPEQEAFLELIKEYIIANGCAEVKD 871 Query: 1132 FKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 GG + F +NL L+ + S + Sbjct: 872 I-QEICADLGGIYRAKAIFKENLGELVEELSLAL 904 >UniRef50_A4T8B3 Type III restriction enzyme, res subunit n=6 Tax=Mycobacterium RepID=A4T8B3_MYCGI Length = 907 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 208/994 (20%), Positives = 367/994 (36%), Gaps = 171/994 (17%) Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 E +R LID+QL +AGW K A+ + G DY+L Sbjct: 13 EARARKLIDSQLTQAGWVVQDKKDLNLFAAQGVAVREVVMKP---------GHGRVDYLL 63 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 +V + V+EAK + +S Y+ Sbjct: 64 YVDKAVVGVIEAKPVGTPLSGVEWQSAMYADGLPADV----------------------- 100 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 + + + ++PF + +G E + + D ++ + RPE + Sbjct: 101 --RIAAKTRDGRLPFVFEASGVETH----------FTNGFDPEPRARLIFNVPRPETMAR 148 Query: 422 MLGSEPQK-----QNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ-QEILLAMATGT 475 L P + LR Q +A+ VE+++ + L+ MATG Sbjct: 149 HLREAETNPDSPTWRAKVRKLPALDTEALRPAQIEAINGVEQSLADQRYDRSLVQMATGA 208 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTR--INGDTFNSIFDIKGL 533 GKT TA+ +RL++ R+LFLVDR +L +Q LG F++ R +G F ++++ L Sbjct: 209 GKTFTAVTQSYRLLKHGGVDRVLFLVDRNNLADQTLGEFQNYRTPDDGRRFTELYNVNKL 268 Query: 534 TDKFPEDSTKIHVATVQSLVK-----------------------RTLQSDEPMPVARYDC 570 + STK+ ++T+Q + + T+ + +P +D Sbjct: 269 SSAGLLGSTKVTISTIQRVFRFIKAGEVSDTDDPDIDDYIPDAPVTVSYSDALPPETFDL 328 Query: 571 IVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIF- 629 ++VDEAHR +R +L++FDA + LTATP T F Sbjct: 329 VIVDEAHRSI-------------------YGVWRGVLEYFDAHVVGLTATPGKQTFAFFR 369 Query: 630 GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLE 688 V YTY +V DG +D D +I T+ + +G ++ G V ++ + E +TL+ Sbjct: 370 QNLVSDYTYPESVADGVNVDFDV-YRIRTKISDQGSHIEAGTIVPKVDRRTREQRLETLD 428 Query: 689 DDQDFEVADFNRGLVIPAFNRAVCNELTNYL------DPTGSQKTLVFCVTNAHADMVVE 742 DD D+ +R + R V + L + KTL+F + HA+ +V+ Sbjct: 429 DDLDYVPGQLDRAVTATDQIRTVLESFRDRLFTEIFPGRSTVPKTLIFAKDDNHAEEIVK 488 Query: 743 ELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDI 802 ++R F K +D KIT + AR + + F I VTVD++ TG D+ Sbjct: 489 QVREVFGK-----GNDFAAKITYN----ARNAKEQLKAFRTSPSLRIAVTVDMIATGTDV 539 Query: 803 PSICNIVFLRKVRSRILYEQMKGRATRLCPEVN----------KTSFKIFDCVDIYSTLE 852 + + F+R VRS +EQMKGR R P+ + KT F I D + + E Sbjct: 540 KPLECVFFMRDVRSAQYFEQMKGRGARTVPDADFQAVTPDATSKTRFVIVDAIGVT---E 596 Query: 853 SVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATF 912 P+ + V L+ L+ + + E L ++L ++ Sbjct: 597 HEFVEPPLNRQRSVPLKKLLEKAA-----------NLTITEDEAATLASRLAKL------ 639 Query: 913 NRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP-----HWSAEVFNKLPGFIAR 967 + D + LDE+ + + P +R Sbjct: 640 ---ELDLTDAERVELDEVAGQPVRDVIRSLVDAVEPSTTTPEAIEAALVPIASNPELRSR 696 Query: 968 LEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 + +L+ + + D DE++ D + +E++ + + + ALQ Sbjct: 697 VLELRAAHDRIIDEVS----ADELIEAG-GVVDTGKARHIVESWTAYLDEHRDEITALQL 751 Query: 1028 VINR-PRDLTRKGLVELQEWFDR--QHFEESSLRKAWKETRNEDI-------AARLIGHI 1077 R + + L R ++ + A+ E + L+ + Sbjct: 752 GYEAGERRIDFAFIEGLATRIARPPHNWTPDVIWNAYAAIDGEKVHRSATHAVTDLVSLV 811 Query: 1078 RRA-AVGDALKPFEERVDHALTRIKGEND-----WSSEQLSWLDRLAQALKEKVVLDDDV 1131 R A V D L P+ +RV + + ++ + WLDR+ + + + Sbjct: 812 RYATGVDDELVPYGDRVREKYAAWLTQQEQAGVTFTDTERWWLDRMVSVIASSAGIRVED 871 Query: 1132 FKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 F RGG R D L+ + + + Sbjct: 872 LDDAPFIERGGTDGAIRDLGDRAAELIDELNAEL 905 >UniRef50_B5GJX6 Type I site-specific deoxyribonuclease protein R n=1 Tax=Streptomyces sp. SPB74 RepID=B5GJX6_9ACTO Length = 1052 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 183/873 (20%), Positives = 330/873 (37%), Gaps = 174/873 (19%) Query: 104 AQMCLRLGFRLAVWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQ 163 A+ C++ F W+ R +D P + + + L R Q Sbjct: 2 AETCVKELFHCLYWFARTCARDPAALPPA---------ALEFDTGIVPRPLSPHARALKQ 52 Query: 164 TQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERK 223 A L+ K+ E E + + + L A+ A+ +AEL ++ E+ R Sbjct: 53 -------------------AELKAKEAEDETRFREQARQLAAERAQ-SAELTRRLEELRA 92 Query: 224 AYHKEITDQA-IKRTLNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAI 281 + T + E+ +R D L++AGW + P I Sbjct: 93 GIAAAKAANQAVGDTHDYDEKTTRDAFTDLLLKEAGWDLTT----------PGRDTEYPI 142 Query: 282 AEWPTGKDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLR 340 A +G +G+ DYVL+ +P+A+VEAKR D ++ Y+ + F R Sbjct: 143 A---SGMPAKSGKGYVDYVLWGDDGRPLALVEAKRTRRDAREGQQQAKLYADALEARFNR 199 Query: 341 ETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDV 400 P + TNG E T G+ Y Sbjct: 200 R---------------------------------PVIFCTNGYE---TYLWDDGLGY--- 220 Query: 401 RDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI 460 + + + ++LL + + + A ++ R YQ A++ V + Sbjct: 221 -----PPRQVRGFFTKDQLLWHIRQRAGRLS--LASTRIDRKIAGRPYQLRAIQRVGETF 273 Query: 461 VKGQQE-ILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI 519 + + LL MATGTGKTRT +A++ +L+++ +R+LFL DR++L QA+ AF++ Sbjct: 274 EQDRSRQALLVMATGTGKTRTTVALVDQLMKAGWARRVLFLADRQALVTQAMKAFKENLP 333 Query: 520 NGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD----EPMPVARYDCIVVDE 575 N + + D + +++++T Q+++++ D +D +V+DE Sbjct: 334 NTPVASLLDD--------KTATARVYLSTYQTMLRQIDVIDGDGRRRYGPGHFDLLVIDE 385 Query: 576 AHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF-- 629 AHR + Y + +FD++ + LTATP +T ++F Sbjct: 386 AHRSV-------------------YAKYGELFRYFDSLLLGLTATPKDEIDHNTYRLFAL 426 Query: 630 --GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTL 687 G P Y A +G+L+ +++ R + G+ + +S + + D Sbjct: 427 EDGVPTDSYGLDEAAGEGYLVLPKA-VKVPLRFMEHGIRYAD------LSEEEKAEWDAK 479 Query: 688 EDDQDFEVADF--NRGLVIPAFNRAVCNELTNYLDPTGSQ--------KTLVFCVTNAHA 737 E +D E+ D + FN +++ L G + KT++F +AHA Sbjct: 480 EWTEDGEIPDAVGRHDMNTYLFNEDTVDKMLQTLMTRGHRVEGGDRIGKTIIFAKNHAHA 539 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 + E + YP+ IT + N R P+I ++VD+L Sbjct: 540 RYIEER----YNANYPRDGGHTARVITYKETYAHTLLDAFADPRNPPRAPDIAISVDMLD 595 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV----------NKTSFKIFDCVDI 847 TG+D+P + N+VF + V SR + QM GR TRL P + +K F +FD Sbjct: 596 TGIDVPEVVNLVFAKPVFSRTKFWQMIGRGTRLRPGLYGPGPDNPAHDKQDFFVFDFCGN 655 Query: 848 YSTLES---------VDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQ 898 S T+ + +++L +++ + + T D Sbjct: 656 IDFFNSRLEHSEGRRATTLTEQLRHRQLDLIRCLDKRQQPDPARDTGLDAYRTEAEIRWT 715 Query: 899 LVAKLQRIIGLATFNRDRSETIDKQVRRLDELC 931 L +L R + N D + R ++ Sbjct: 716 LARRLHRT--VTGMNPDNV-LVRPHRREIERFA 745 >UniRef50_C3QTD9 Type I restriction enzyme EcoKI R protein n=3 Tax=Bacteroidales RepID=C3QTD9_9BACE Length = 905 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 212/995 (21%), Positives = 378/995 (37%), Gaps = 176/995 (17%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 EE++R +ID L AGW+ + P V+ E K ADY+ Sbjct: 3 PEEKARIIIDRMLNDAGWEVVDRN-------HYSPEVSAIAVEEGLLKGNRE----ADYL 51 Query: 301 LFVGLKPIAVVEAKRNNIDVPARL--NESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 LF+ K + V+EAK+ ++ + + + +++ +Y++ VP Sbjct: 52 LFLNGKAVGVLEAKKESVSIYSEIVADQAEKYTRG----------------------VPH 89 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 + +W + +P Y +NGRE + +RD R+ + +L + H P+E Sbjct: 90 WCQAWMN-------PLPLVYLSNGRE----------LLFRDTREVDSEYISLNKIHSPKE 132 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 ++++LG + FA P + GLR Q +A+ +E + G L+ +ATG GKT Sbjct: 133 IVKLLGLKDD-----FAGLPTLKRKGLRDCQYEAITKLENSFRSGHDRALMVLATGAGKT 187 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI--NGDTFNSIFDIKGLTDK 536 TA +RL+ KR+LFLVDR +LG+QA G F R+ NGD FN+IF ++ L Sbjct: 188 YTACLAAYRLLAFTSMKRVLFLVDRNNLGKQAEGEFGTFRLTENGDPFNTIFGVERLKTA 247 Query: 537 FPEDSTKIHVATVQSLVKRTLQSD-----------------------EPMPVARYDCIVV 573 + + +AT+Q L D +P +D I++ Sbjct: 248 KIPNDANVVIATIQRLFSLLSGDDFIDDDNEADYVVDGTRNMNLPVHPNLPPDYFDLIII 307 Query: 574 DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPALHTVQIFGEP 632 DE HR ++R +L++F A I LTATPA+ T+ F Sbjct: 308 DECHRSI-------------------YGSWRSVLEYFSSAKMIGLTATPAVETLAFFNNN 348 Query: 633 -VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP-QGEVINDTLEDD 690 + YT +++DG +D +I T+ ++G + +G+ V +I+ G+ N ++ Sbjct: 349 LIVNYTLEKSIVDGVNVDYRV-FRIKTQVTEDGGAIREGDIVRKITRYTGKTENIETQET 407 Query: 691 QDFEVADFNRGLVIPAFNRAVCNELTN------YLDPTGS------QKTLVFCVTNAHAD 738 + + NR ++ PA + + + + DP KTL+F + +AHA Sbjct: 408 TTYTRRELNRSIINPAQIKLILETYRDSVYTEMFNDPQREPNFDYLPKTLIFALNDAHAS 467 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 +V+ + F ++ + + KIT A +I F ++ I VTV L+ T Sbjct: 468 NIVKIAKEVFGRE----DDTFVQKIT----YSAGDSNELIRHFRNDKDFRIAVTVTLVAT 519 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLC----------PEVNKTSFKIFDCVDIY 848 G D+ + ++F+R V S LY QMKGR R +K F + D V + Sbjct: 520 GTDVKPLEVVMFMRDVESDSLYTQMKGRGVRTIGDEQLRNVTPNAHSKDLFFLVDAVGVT 579 Query: 849 STLESVDTMRPVV-VRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII 907 V T + L+ L+ I+ E + L ++L RI Sbjct: 580 EHEHYVTTSGVGSNAETLLSLRQLLERISHGE-----------LLDEHLRLLASRLSRIH 628 Query: 908 GLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIAR 967 A + D ++ N + P++ + + P I Sbjct: 629 NKANEEQRNEFIRLAGTDMRDMASHIYEALDNNLLPEYVNINEPNYERKGLVR-PLAIHP 687 Query: 968 LEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 + I N I + +D ++ + D +AF+ V + AL+ Sbjct: 688 DAREYLCILNAGFVTILMPGEDTLIEKGFSIEEAH---DTTQAFEQYVNEHRDEIEALRI 744 Query: 1028 VINRPRD-LTRKGLVEL--QEWFDRQHFEESSLRKAW-----------KETRNEDIAARL 1073 + N + +T L +L + + F S L + ++ + Sbjct: 745 IYNNNGEPITYAMLKDLENRMKMENYKFNPSQLWNTYSIINPSSVVHFGTKEEKEALTNI 804 Query: 1074 IGHIRRAAVGDA-LKPFEERVDHALTRIKG--ENDWSSEQLSWLDRLAQALKEKVVLDDD 1130 I +R A L+ G + + Q + + ++ + Sbjct: 805 IQLVRYAYHQVTELRSLSSMAAQRFELWCGQIQRTMTEAQKNTIRQIVNYIVANGSCTIK 864 Query: 1131 VFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 K + + R F + ++ I Sbjct: 865 EIKE---DDKTIALQMIRKFGT-----IAAVNEAI 891 >UniRef50_C6A4W6 Type III restriction enzyme, res subunit n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A4W6_THESM Length = 841 Score = 415 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 205/960 (21%), Positives = 371/960 (38%), Gaps = 155/960 (16%) Query: 239 NLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 N SE ++R LID +L AGW + + + A Sbjct: 5 NYSEADTRAKLIDPKLHDAGWNENRIKREYVISLGRIL----------NNDGSRTSPKRA 54 Query: 298 DYVLF---VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 DYVLF + IAVVEAK+ + D L ++ RY+K D Sbjct: 55 DYVLFYPDIQGHIIAVVEAKKASEDPYKGLEQAKRYAKTLDA------------------ 96 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYR-ATMKTKSGIWYRDVRDTRNMSKALPEW 413 PF YSTNG + TK + + + N+ + + Sbjct: 97 --------------------PFAYSTNGLKIVEYDFLTKQSNEFSEFPEPENLWERYVKR 136 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 +E ++ P + + D RYYQ+ AVR + I+ G++ +LL MAT Sbjct: 137 RGLDEAIKRSEKNPLEVPYYIRDKK------PRYYQDVAVRRALEEILLGRKRLLLTMAT 190 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGL 533 G+GKT A + ++L +S K+ILF+VDR L QA AFE NS +++KG Sbjct: 191 GSGKTYVAFQIAWKLRKSNFLKKILFIVDRVYLRNQAYNAFEAFG------NSRWELKGD 244 Query: 534 TDKFPEDSTKIHVATVQSLV--KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGEL 591 F +D ++ AT Q+L K + + +D +++DE HR Sbjct: 245 NFNFAKD---VYFATYQTLYSEKNGKRVYQYFDPDYFDLVIIDECHRSGW---------- 291 Query: 592 QFRSQLDYVSAYRRILDHF-DAVKIALTATPALHT----VQIFGEPVYRYTYRTAVIDGF 646 + + IL +F +A+ + LTATP + FG+PVY Y + DG+ Sbjct: 292 ---------NRWHDILGYFNNAIHLGLTATPKRSDNVDVYKYFGDPVYEYKLAQGIEDGY 342 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 L + I++ T +EG K + + + I + E + + +F + +++P Sbjct: 343 LAPPEEIIRVYTNIDKEGKITFKELRSAGVKLE---IPEEAELKEYYTAEEFEKSIILPD 399 Query: 707 FNRAVCNELTNYLDPTGS-QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITG 765 +A+ N + +L+ T KT+VFC T HA V L F K+ + I Sbjct: 400 RTKAIVNWIAQFLESTNPFAKTVVFCPTQRHAREVAALLNNHFNNKFN--VDNYAYPIIS 457 Query: 766 DADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 D + + ++ N E P + TVD+L+TG+D+P I NI+FL+ + S++ + Q+ G Sbjct: 458 DDPEAHQVLKNSFAS-NDEIFPVVATTVDVLSTGIDVPPIKNIIFLKHIGSKVEFHQIIG 516 Query: 826 RATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITE 885 RA+RL + K +F++ D + D + +P +N + I + Sbjct: 517 RASRLAENMRKFTFRVIDFTGATRLFDKWD-IPDYQAKPNQPTDWYLNLL-------IVD 568 Query: 886 ADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASR 945 + + + + K + + D + L + ++A V+ + Sbjct: 569 DETLDPIKGADVVVHVKPGSPVHIIGG--------DDGIIFLSNVPREAVFVDIRARGYK 620 Query: 946 LREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQ 1005 ++ I L+ + + + + + I++E + G+ Sbjct: 621 PKKTYVSTFPRP--DKQATITLLKLRPENKPPITVSGLKVYIEEENRVKIEVKGNKILDA 678 Query: 1006 DFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETR 1065 ++++ V++ + L+ + L R+ + +E + + + K+ Sbjct: 679 EYVKYSQEQVRKRVASLEDLKKIW-----LNRQVRLRFKEELKKAGIDLKMI-SLIKKVS 732 Query: 1066 NEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKE-- 1123 D L + +A + +ER + + +LDR + +E Sbjct: 733 EADEFDLLANLLFQA----PIVSRDER----------AKLFMEVKKEFLDRFGERGREII 778 Query: 1124 ------------KVVLDDDVFKTGNFHRRGGKAMLQRTFDDN--LDTLLGKFSDYIWDEL 1169 + D VF NF GG + R F L +L + ++ +L Sbjct: 779 LDLIDHYRLYGLSEIEDPKVFNLPNFQIYGGLKGIARIFGGARGLKKILEEIEKGLYADL 838 >UniRef50_B7JWD2 EcoEI R domain protein n=2 Tax=Bacteria RepID=B7JWD2_CYAP8 Length = 875 Score = 413 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 209/992 (21%), Positives = 368/992 (37%), Gaps = 181/992 (18%) Query: 239 NLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 + +E ++R LID QL+ +GW + R + + + Sbjct: 3 SYNEADTRAKLIDPQLKLSGWGENQIEREHYFAKRQQITAGRIY--LVGDQSRRRQPCRV 60 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY+L + IAV+EAK + V A L ++ Y++ D Sbjct: 61 DYLLRYQGQAIAVLEAKDESHSVDAGLEQAKAYARKLD---------------------- 98 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 +PF +++NG + + + S+ L + P+ Sbjct: 99 ----------------LPFAFASNGHS------------FIEFDFFSSCSQELSTFPTPQ 130 Query: 418 ELLEM--LGSEPQKQNQWFADNPGMSEL------------------GLRYYQEDAVRAVE 457 +L + + + ++ A+N G + RY+QE A+R V Sbjct: 131 QLWQRWETYRQGKVKSGRVAENGGNYGVLSVNPLLYPVCPESQCGKVPRYFQEVAIRRVI 190 Query: 458 KAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKR-ILFLVDRRSLGEQALGAFED 516 + I+K Q+ ILL MATGTGKT TA ++++L QS ++ ILFL DR L +Q+ F Sbjct: 191 ERILKQQRRILLTMATGTGKTFTAFQIVWKLKQSGWLRKPILFLSDRLILRDQSYNTFAP 250 Query: 517 TRINGDTFNSIFDIKGLTDKFPEDSTK-IHVATVQSL--VKRTLQSDEPMPVARYDCIVV 573 D +G+ +K +S + ++ A Q+L +K +P + I++ Sbjct: 251 F------VAPSADPRGVIEKGKFNSNRELYFALYQALDALKEGESLFSQIPADFFGLIII 304 Query: 574 DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQI 628 DE HR + IL HF A+++ +TATP + T Sbjct: 305 DECHRSGF-------------------GKWNGILQHFTGAIQLGMTATPKQDESIDTYAY 345 Query: 629 FGE-------------------PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSK 669 F P Y+Y+ + DGFL ++ T + G++L + Sbjct: 346 FCAEESEIPLDPDDNSKGTWKPPAYQYSLGQGIDDGFLATYKV-HKVRTTVDKNGLHLQE 404 Query: 670 GEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTL 728 RI I + +E Q + F R + +P + + + L L G + KT+ Sbjct: 405 A----RIQGAEIYIPEDVEPRQQYLTGQFEREITLPDRTKTMVSHLAGLLRQFGEREKTM 460 Query: 729 VFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPN 788 VFCV HA +V L+ F + I+ G+A + Q + P Sbjct: 461 VFCVDMTHARLVARLLQNEFAELGYSNYAVPIVSEEGEAQAWLEQFQD-----SDRLTPI 515 Query: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIY 848 + T +LL+TGV++PS NIVF++ + S IL++Q+ GR +R+ P K F+I D V Sbjct: 516 VATTAELLSTGVNVPSCRNIVFMKPISSPILFKQIIGRGSRIDPATGKEWFRIIDYVGAS 575 Query: 849 STLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIG 908 + D RP+ L IT + T I +GR + E LV + Sbjct: 576 RLFDQWD--RPI--------GELPQAITGARTSII---EGRVIHGDTEEFLVGASVSALI 622 Query: 909 LATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARL 968 T D RL+ L + G R RE + N+ + L Sbjct: 623 GVNQQLSPILTDDNGYFRLEALPAGKIRLFLRGNGFRSREITLETAE---NETLTVVLAL 679 Query: 969 EKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQ------RSPNAQ 1022 +K + + + + I DEV + G+ T +L+ + ++ + Sbjct: 680 NSVKPPVGKIRVEGLEVTIADEVTFIVDATGEQLTLAQYLDYTKAKIRGYVPNWSQLHQI 739 Query: 1023 PALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAV 1082 + + R L + L + + A + D+ A + A Sbjct: 740 W----IDSEQRKLLLRELTTASVYIEVLGEV-----LAQPKADQFDLLAHI-------AF 783 Query: 1083 GDALKPFEERVDHAL--TRIKGENDWSSEQLSWLDRLAQALKE--KVVLDDDVFKTGNFH 1138 + +ERV+ L + E + L L + + +++ +VF+ F Sbjct: 784 NKPIHTRDERVEAFLNYEQWYLEAQTEEAREVILGLLDKYRLAGIEEIVNPEVFRLSPFQ 843 Query: 1139 RRGGKAMLQRTFD--DNLDTLLGKFSDYIWDE 1168 G + +NL + + ++ + Sbjct: 844 EMGQIKGVILRLGTMENLRQIFREIQQKLYRQ 875 >UniRef50_Q73J29 Type I restriction-modification system, R subunit n=2 Tax=Treponema RepID=Q73J29_TREDE Length = 934 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 198/1011 (19%), Positives = 381/1011 (37%), Gaps = 181/1011 (17%) Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 L E+++R IDA L AGW ++ PE +A+ E ADY Sbjct: 16 LPEQKARVYIDAYLEDAGWTVVNRNEF-----VPEAINAQAVRENILK-----GNKEADY 65 Query: 300 VLFVGLKPIAVVEAKRNNIDVP-ARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 +L++ K I V+EAKR ++ ++ Y P+ Sbjct: 66 ILYLDGKAIGVLEAKRKENNLGLEVAEQAQNYGNIL----------------------PD 103 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 + +W+ +PF + +NG + ++++ D + K L + P++ Sbjct: 104 WIRAWKT-------PLPFIFLSNGET----------LLFKNMHDEKPSYKVLKKMLTPKD 146 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 ++++ G + + P + GLR Q +A+ +E + +G ++ L+ +ATG GKT Sbjct: 147 IVKLAGGDIDSEYAKLPSIPAVGSKGLRECQFEAITKLELSFKQGFKKALIVLATGAGKT 206 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI--NGDTFNSIFDIKGLTDK 536 TA +RL+ KR+LFLVDR +LG+QA G F ++ G+ F+ + + L Sbjct: 207 FTACTAAYRLLNYTSAKRVLFLVDRNNLGKQAEGEFGTYKLTETGNPFSDEYIVHRLKSV 266 Query: 537 FPEDSTKIHVATVQSLV--------------------------KRTLQSDEPMPVARYDC 570 + + ++T+Q L + + +P +D Sbjct: 267 EKIGNASVVISTIQRLFAVLTGQEINDAGDDEETDNDENAPGKRIQFTGNILLPPDFFDV 326 Query: 571 IVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPALHTVQIF 629 I++DE HR D +R++L +F +A I LTATP F Sbjct: 327 IIIDECHRSIYGD-------------------WRQVLTYFNNAKIIGLTATPTPEAEAFF 367 Query: 630 GEP-VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS-PQGEVINDTL 687 + V YT ++ DG + +I T ++ G + GE+++++S G+ Sbjct: 368 NKNRVVNYTLEKSIADGVNVPPRV-YRIKTEISESGGTIKDGEKIKKVSNWSGKRKTQKQ 426 Query: 688 EDDQDFEVADFNRGLVIPAFNRAVCNELTNYL----------DPTGSQKTLVFCVTNAHA 737 +D+ F D +R +VIPA V + + D T KTL F T HA Sbjct: 427 HEDRQFTKTDIDRSVVIPAQIETVVQAYKDSIYESLYPDRKKDWTMIPKTLFFAKTENHA 486 Query: 738 DMVVEELRAAFKKKYPQ--LEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 + +++ ++ FK ++P + IT + +I+ F + I +TV L Sbjct: 487 EDILKAIKKVFKNEFPNGEIPEHYAQLITCKSGNS----NQLISDFRNNKDFRIAITVTL 542 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR----------LCPEVNKTSFKIFDCV 845 + TG DI + +VF+R + S +LY QMKGR R +K + + D V Sbjct: 543 VATGTDIRPLEILVFMRDIHSEVLYTQMKGRGCRTFADDKLRNVTANAASKDFYYLVDAV 602 Query: 846 DIYSTLESVDTMRPV-VVRPKVELQTLVNEITDSETYK---------ITEADGRSFAEHS 895 + +S+ T ++ + L+ L+ + E ++ + ++ +E Sbjct: 603 GVTEHEKSMPTPGGNGDIKKVLPLKDLLEHLAHGELSDNNLELLADYLSNVNKKAESEDI 662 Query: 896 HEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSA 955 E + L I + + E+I + L Sbjct: 663 IE--LNDLLGAITVKQLAVNIFESIAPESCSLPPYKDINEPNTERKILISPLINNVKARK 720 Query: 956 EVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLV 1015 ++ GFI I L+ D ++ + ++++ F++ + Sbjct: 721 KLLEINAGFI----------------KIALEKQDTLIYAGFSK---EQAKEYIATFETYL 761 Query: 1016 QRSPNAQPALQAVINRPR-DLTRKGLVELQEWF--DRQHFEESSLRKAWKETRNED---- 1068 + + AL+ + N+ + +T L +L++ F+ L ++ E Sbjct: 762 DDNKDEIEALRILYNQEKIAITYTMLKDLEKKLIAYNNQFKPEFLWTCYQTLDGESGKVK 821 Query: 1069 ---------IAARLIGHIRR-AAVGDALKPFEERVDHALTRIKGE--NDWSSEQLSWLDR 1116 + LI +R + D L + R G+ ++ EQ+ + + Sbjct: 822 PLNRETELGVFTNLIQLVRYGYKLDDELVSLKRRFGSYFNLYCGQAWRKFTPEQIEIVRQ 881 Query: 1117 LAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFD-DNLDTLLGKFSDYIW 1166 +A+ + + + + F D L+ + S Y++ Sbjct: 882 IAEYIVQNGCITNIELNNAKHDL---FVKAVPIFGADKLNAEMQTISKYLF 929 >UniRef50_B9M295 Type III restriction protein res subunit n=2 Tax=Proteobacteria RepID=B9M295_GEOSF Length = 908 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 221/1018 (21%), Positives = 383/1018 (37%), Gaps = 195/1018 (19%) Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 + +E ++R +ID QL +AGW S+ + R +AE G GF Sbjct: 1 MTRNESQTRQEMIDQQLARAGWGVKSRAVVEEFLIR--------VAEDD--PKWHGQHGF 50 Query: 297 ADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADY L KPIA+VEAKR D A ++ Y+ + F + Sbjct: 51 ADYALLGRDGKPIAIVEAKRTGRDALAGKRQAADYADQIKSQFSHD-------------- 96 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 PF + TNG+E W RD R + + ++ Sbjct: 97 -------------------PFIFLTNGKEIH--------FWDRD----RYPPRKIAGFYT 125 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 ++L + +K Q D + R YQ +A+R V + + +++ LL MATGT Sbjct: 126 RDDLERL--QHQRKYAQPLHDITISPTIAGRDYQNEAIRRVTEGVDAAKRKFLLVMATGT 183 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKTRT IA++ L++++R +R+LFL DRR L QA+ F+ N S+ I+G Sbjct: 184 GKTRTTIALVDTLLRAKRVQRVLFLADRRELVRQAMAEFKSHLPN----ESLARIEGGET 239 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 +I AT S++ Q + V YD I+ DE+HR Sbjct: 240 ----SGARIQFATYPSMM----QVYSRLSVGYYDLIIADESHRSI--------------- 276 Query: 596 QLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDGFL 647 Y+ I DHFDA+++ LTATP +T +F G P Y Y+Y A+ D L Sbjct: 277 ----YQRYKAIFDHFDAIQLGLTATPTDYIDHNTFALFDCGDGTPSYYYSYEQAIADNNL 332 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAF 707 ++ +++ + +G+ + Q D+ +FE +D + ++ A Sbjct: 333 VN----YRVLDAQTNFQLRGIQGDTLPEPLKQMARDQGVELDELNFEGSDIEKSIINQAT 388 Query: 708 NRAVCNELTNYLDP---TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT 764 N A+ E + K+++F V++AHA L +F + YP+L+ + ++ Sbjct: 389 NDAMVREFMDKSRKDIRGLPHKSIIFAVSHAHAK----RLYESFNRLYPELQRQGMAEM- 443 Query: 765 GDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMK 824 D + + F + +P + ++VD+L TGVDIP+I N+VF + V S++ + QM Sbjct: 444 --IDSHMERADATLDDFKFKSMPRVAISVDMLDTGVDIPAIQNLVFAKPVFSKVKFWQMI 501 Query: 825 GRATRLCPEVN----KTSFKIFDCVDIYSTLE---SVDTMRPVVVRP------KVELQTL 871 GR TRL + K F I D ++ + + P P ++E L Sbjct: 502 GRGTRLHADKATGEIKKDFLIIDHWKNFAYFKLKPDGEIDHPSEPLPVRLFRLRLEKWQL 561 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLD--- 928 ++ I E + + Q + L + + Sbjct: 562 LHAQQQDTQPAIDEL--LTMLQSLPRQSINVRPHWDELDALAQQWPAPSQSMLDHFSKSI 619 Query: 929 ---------------------ELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIAR 967 E A +G +++RE+ + + +P Sbjct: 620 APLMRLAPLAGLDELQFCVWCERLTVAWLKGDDGEQAKIRERIQETITSLADNIPDVQRV 679 Query: 968 LEKLK-----TDINNLNDAPIFLDID----------------------DEVVSVKSL--- 997 E+ +L+ + D + + Sbjct: 680 AEQRAWVCSIGFWQHLDMPRLISLQTTFAPLMRYRTSTPGQTIEINLPDSITQRSWIIYG 739 Query: 998 -YGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHF--EE 1054 G+ + + E ++LV R P L + + L+ + L + + ++ E Sbjct: 740 PTGEGAFAESYREQVEALVHRLAEQLPELAKL-KQGEFLSDEELEGISQTLNQADLFVTE 798 Query: 1055 SSLRKAWKETRNEDIAARLIGHIRRAAVGDALKP-FEERVDHALTRIKGENDW-SSEQLS 1112 +LRKA++ A L +R A P EER++ A E+ + + QL+ Sbjct: 799 ETLRKAFETPT-----ASLTDCLRHILCEGAHLPNREERINAAFEAFIAEHGYLRANQLN 853 Query: 1113 WLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 +L + A+ + R G ++ F L + + DE+A Sbjct: 854 FLRAVKAAVLRHGRITRAALSEPPLSRVG---RVESLFPSQDIEELIDLTHQLLDEVA 908 >UniRef50_D1W5U0 DEAD/DEAH box helicase n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5U0_9BACT Length = 786 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 197/837 (23%), Positives = 322/837 (38%), Gaps = 134/837 (16%) Query: 239 NLSEEESR-FLIDAQLRKAGWQADS----KTLRFSKGARPEPGVNKAIAEWPTGKDETGN 293 L+EE+ + I + GW DS + +RF+ G G N E P Sbjct: 6 ELTEEDVKNRYISEAITSKGWPKDSIFMEQKVRFTDGKISLHG-NLVHRERP-------- 56 Query: 294 QGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEV 352 FADYVL+ PIA+VEAK N V L ++ Y++ D Sbjct: 57 -KFADYVLYANKATPIAIVEAKDANHSVSHGLQQAKIYAQMLD----------------- 98 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 + F YS+NG G D + ++ E Sbjct: 99 ---------------------VKFAYSSNG----------EGFAEHDYLTGKERIFSMEE 127 Query: 413 WHRPEELLEMLGSEPQKQNQWFADN---------PGMSELGLRYYQEDAVRAVEKAIVKG 463 + EEL+E SE N G + RYYQ +A+ AI KG Sbjct: 128 FPTKEELIERYKSEANDGNGLNEQELAVIAQPFCTGQNIFPPRYYQRNAINRTVNAIAKG 187 Query: 464 QQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDT 523 Q +LL MATGTGKT TA +++RL+ S+ K++L+L DR L +Q++ +D Sbjct: 188 QSRVLLVMATGTGKTYTAFQIVWRLLHSKLKKKVLYLADRNILVDQSIQ--QDFNPLKKV 245 Query: 524 FNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM---PVARYDCIVVDEAHRGY 580 + I K S ++ A Q L+ + + +D ++VDE HRG Sbjct: 246 THKIDYSKDKNHLEELSSYQVFFALYQQLIGQNDAKNYQELFPNPDYFDLVIVDECHRGS 305 Query: 581 ILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQIFGEPVYR 635 D S +R ILD+F A I +TATP ++ FGEP+Y Sbjct: 306 AKDD----------------SNWRNILDYFSSATHIGMTATPKETKYQSSIGYFGEPIYT 349 Query: 636 YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEV 695 Y+ + + DGFL P ++I + + G++ Q ++ + +ED + + Sbjct: 350 YSLKNGIEDGFL----APFKVIN------ITTNIGDEWRPTKGQKDIHGNEIED-RIYNN 398 Query: 696 ADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQ 754 +D++ +VI R V E+TNYL T KT+VFC HA+ + L A + Sbjct: 399 SDYDYNIVIEDRIREVAQEITNYLKSTDRMAKTIVFCADETHAERMRMALTNA-NADMCK 457 Query: 755 LEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKV 814 D +++ITG + K+ I+ E+ P I T LL+TGVD IV +++ Sbjct: 458 KNPDYVVRITGSDEYGKSKLDYFISV--AEKYPVIATTSKLLSTGVDCKMTKLIVLDQQI 515 Query: 815 RSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTL--- 871 S ++Q+ GR TRL + KT F + D ++ + P+ + P + Sbjct: 516 GSMTEFKQIIGRGTRLREKEGKTYFTVMDFRNVTRLFADPEWDGPIEIDPNYPPKEKEPT 575 Query: 872 ------VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVR 925 NE T + A+ + ++ + R+E+I + Sbjct: 576 PYLPPEENEPTGVKEPDPAPQPKPIVAKDGCQVMIINKVVSVYDTDGKLLRTESITDYTK 635 Query: 926 R--LDELCQDA-------AGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDIN 976 + +D + A L+E G +A + + + + I Sbjct: 636 KSIIDTYATIDTFTSKWQETKKKSDIAEMLKESGIDLAALKHTENMDDVDDFDFI-CHIA 694 Query: 977 NLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEA-FDSLVQRSPNAQPALQAVINRP 1032 + ++V + + LEA D ++ + +L + N P Sbjct: 695 YGKKTLTRHERAEQVKKRDIFNKYGEQARSVLEALLDKYIKEGISELESLTVLENDP 751 >UniRef50_C4XDR7 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XDR7_MYCFE Length = 808 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 186/791 (23%), Positives = 321/791 (40%), Gaps = 132/791 (16%) Query: 225 YHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEW 284 Y E+ K T+N E + R I L +AGW + + + A + Sbjct: 7 YLNEVIKMNKKNTINEEEVKLR-FITPALERAGWDKNFINMEYYISA--------GKVIF 57 Query: 285 PTGKDETGNQGFADYVLFVGL--KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRET 342 G+ + DY+L P+A++EAK + L ++ Y+K Sbjct: 58 ENGEAKKLKAKRIDYLLNYNGDGSPLAIIEAKGEDHKEGDGLLQAQNYAK---------- 107 Query: 343 LLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRD 402 R + F +++NG +R + D++ Sbjct: 108 ----------------------------RLGVRFVFTSNGNNFR----------FYDMKT 129 Query: 403 TRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADN------PGMSELGLRYYQEDAVRAV 456 + L E+ P+EL EM E K+N+ G + RYYQ+ A+ Sbjct: 130 GIEKTIGLDEFFTPDELFEMTYGEEIKENKALEKIISTPYYYGQNSHIPRYYQKRAINDT 189 Query: 457 EKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFED 516 A+ KG+ ILL MATGTGKT A +++RL +S K+IL+L DR L +Q Sbjct: 190 VDAVAKGKDRILLVMATGTGKTYVAFQIIWRLWKSGLKKKILYLADRNILIDQT------ 243 Query: 517 TRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS-----DEPMPVARYDCI 571 I GD + ++ + + S +I+++ Q L + + E +D I Sbjct: 244 --IIGDFKPFKNSMVKVSKRNMDTSYEIYLSLYQQLSENGSEDSLKKLKESFKPDFFDLI 301 Query: 572 VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATP----ALHTV 626 +VDE HRG + S +R IL++FD A KI LTATP + + Sbjct: 302 IVDECHRGSASED----------------SKWREILNYFDSATKIGLTATPKETAEVSNI 345 Query: 627 QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDT 686 FGEP+Y Y+ + + DG+L P +++ V+ + E+ ++ GE++ D Sbjct: 346 DYFGEPIYTYSLKEGIEDGYL----APYKVVKFGINTDVFGYRPEK-DKRDKYGEIVEDN 400 Query: 687 LEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ--KTLVFCVTNAHADMVVEEL 744 ++ V DF++ +VI + V ++T+YL ++ KT+VFC HA+ + + L Sbjct: 401 -----EYNVKDFDKTIVIEERTKEVAKKITDYLKSINNRYAKTIVFCDDIEHAERMRQAL 455 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPS 804 + +H I++ITGD ++ +++ I E P IV T +L+TTGV+ Sbjct: 456 -VHYNSDMMAKDHRYIVRITGDNEEGKKQLDNFIDD--NELYPTIVTTSELMTTGVNCK- 511 Query: 805 ICNIVFLRKV---RSRILYEQMKGRATRLCP-------EVNKTSFKIFDCVDIYSTLESV 854 +C ++ L ++Q+ GR TR+ NK F I D + Sbjct: 512 LCRVIALDNTFGENGMTKFKQIIGRGTRIKEFDDPKDKHKNKLYFTILDFKNATKLFADP 571 Query: 855 DTMRPVVVRPKVELQTLVNEITDSETYKITEA--DGRSFAEHSHEQLVAKLQRIIGL--- 909 D P + + L N+ ET K E +G + E+S + + ++I Sbjct: 572 DFNGPAIQEEFFNPEILRNKKAKQETKKEYELVDEGLVWKENSEQNKSNRRKKIYVNGVD 631 Query: 910 ATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLE 969 + D + + + E +D N + +++ +W++ I L Sbjct: 632 VELIYKKVNYYDDEGKLIIEPIEDFVKRNVLKNYNTIQDFVKYWTSN--KTRSTIIQELM 689 Query: 970 KLKTDINNLND 980 I NL + Sbjct: 690 SKGILIENLRN 700 >UniRef50_D2LA91 Type I site-specific deoxyribonuclease n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LA91_9DELT Length = 798 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 172/650 (26%), Positives = 259/650 (39%), Gaps = 126/650 (19%) Query: 237 TLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG 295 + +L+E E+R LID L AGW + S+ R + + I G + Q Sbjct: 6 SHDLNEAETRAELIDPVLAVAGWGI----VEGSRIRREKITNGRLI-----GGGKRSKQD 56 Query: 296 FADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADYVL + +AV+EAKR + + ++ RY+ Sbjct: 57 IADYVLVFHGQKLAVIEAKRVGLKDTEGVGQAKRYATMLQA------------------- 97 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 F YSTNG+ GI+ D+ + + Sbjct: 98 -------------------RFAYSTNGK----------GIYQIDMH--TGAEGYVSSYPT 126 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELG---LRYYQEDAVRAVEKAIVKGQQEILLAMA 472 P++L + ++ FA P + G RYYQ +A+ +AI G+ ILL +A Sbjct: 127 PDQLWQSTFAQKNTWRDRFAAIPFEDKGGSWEARYYQHNAINQALEAIAAGRDRILLTLA 186 Query: 473 TGTGKTRTAIAMMFRLIQSQR-------------FKRILFLVDRRSLGEQALGAFEDTRI 519 TGTGKT A + ++L QS+ RILFL DR L QA AF Sbjct: 187 TGTGKTFIAFQLAWKLFQSRWNLKDWKGGGEPSRRPRILFLADRNILASQAYNAFSAF-- 244 Query: 520 NGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP------MPVARYDCIVV 573 D I + I Q+ + + P P +D IV+ Sbjct: 245 PEDALVRISPDAIRKKGMVPKNGSIFFTIFQTFMAGRDAAGNPAPNFGDYPPDFFDFIVI 304 Query: 574 DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPAL----HTVQI 628 DE HRG D+ S +R IL +F AV++ LTATP T Sbjct: 305 DECHRGGANDE----------------SNWREILTYFSPAVQLGLTATPKRKGNVDTYAY 348 Query: 629 FGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLE 688 FG+PVY Y+ + + DG+L ++ I E VY + VI +E Sbjct: 349 FGDPVYVYSLKEGINDGYLTPFK--VRQIATTLDEYVYTAD----------DNVIEGDIE 396 Query: 689 DDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAF 748 + + + +DFNR + I R + +D T QKTLVFC T HA V + + Sbjct: 397 EGRRYTESDFNRVIEIAERERYRVKLFMDMIDQT--QKTLVFCATQDHALAVRDCINQTK 454 Query: 749 KKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNI 808 + P D I++T + + + + N + +P I+ T L+TGVD ++ NI Sbjct: 455 QNSDP----DYCIRVTANDGSEGERWLRVFQD-NDKTIPTILTTSQKLSTGVDARNVRNI 509 Query: 809 VFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMR 858 V +R + S I ++Q+ GR TRL K F I+D V Y + + Sbjct: 510 VLMRPINSIIEFKQIVGRGTRLFE--GKDYFTIYDFVKAYERFDDPEWDG 557 >UniRef50_A6L7V1 Type I restriction enzyme EcoKI R protein n=11 Tax=Bacteroides RepID=A6L7V1_BACV8 Length = 900 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 208/960 (21%), Positives = 358/960 (37%), Gaps = 184/960 (19%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 EE++R ID AGW+ ++ AI E ADY Sbjct: 3 PEEKARIKIDQWFADAGWKVVNREDYEPTCTA------VAIRE-----GLLKGNLEADYF 51 Query: 301 LFVGLKPIAVVEAKRNNIDV--PARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 LF+ K + V+EAKR D ++ Y++ N + Sbjct: 52 LFINGKAVGVLEAKREETDAFASEVCEQAALYARSVPNIYQAYQK--------------- 96 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 +PF +++NG+E ++ D R+ + + + P E Sbjct: 97 --------------PLPFIFTSNGKE----------LYCCDFREQDSCFRQIMNIPTPHE 132 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 L++ LG E FA P + + GLR Q +AV +EK+ GQ L+ +ATG GKT Sbjct: 133 LVKRLGIE-----DAFAGLPTLKKKGLRDCQYEAVTELEKSFRAGQNRALMVLATGVGKT 187 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI--NGDTFNSIFDIKGLTDK 536 TA +R++ +R+LFLVDR +LG+QA G F R+ NG+ FN+IF + L Sbjct: 188 YTACLAAYRMLSYTPMRRVLFLVDRNNLGKQAEGEFGTFRLTENGEAFNTIFTVNRLRSS 247 Query: 537 FPEDSTKIHVATVQSLVK---------RTLQSDEP-----------MPVARYDCIVVDEA 576 + + ++T+Q L +EP +P +D I++DE Sbjct: 248 SIPSDSNVVISTIQRLFSFLKGETIEDNDDDENEPIEEVTLPPNPNLPHDYFDMIIIDEC 307 Query: 577 HRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALHTVQIF-GEPVY 634 HR +R++L++FD A + LTATP T+ F + Sbjct: 308 HRSI-------------------YGNWRKVLEYFDTARLVGLTATPIPETMAFFNNNCIV 348 Query: 635 RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQV-ERISPQGEVINDTLEDDQDF 693 YT +++DG +D +I T+ + G + +GE+ E GEV + ++ + + Sbjct: 349 NYTLEKSIVDGVNVDCRV-YRIKTQVTETGGAILEGEKFKEETRYTGEVKIVSSKETKIY 407 Query: 694 EVADFNRGLVIPAFNRAVCNELTN------YLDPTGS------QKTLVFCVTNAHADMVV 741 + NR ++ PA + V + + + DP KTL+F + AHA +V Sbjct: 408 TNKELNRSIINPAQIKLVLSTYRDVVYTELFNDPQREPNMDFLPKTLIFALNEAHATNIV 467 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVD 801 + + F + + + KIT A +I +F ++ I VT L+ TG D Sbjct: 468 QIAKEVFGR----TDDRFVQKIT----YSAGDSNELIRQFRNDKDFRIAVTCTLVATGTD 519 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLCPEV----------NKTSFKIFDCVDIYSTL 851 + + ++F+R V S LY QMKGR R + +K F + D V + Sbjct: 520 VKPLEVVMFMRDVESLPLYIQMKGRGVRTIGDEQLRNVTPNAFSKDCFYLVDAVGVT--- 576 Query: 852 ESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLAT 911 E T+ P+ P + TL + + ++L A L RI A Sbjct: 577 EHAQTVAPIDDAPTTKTITL--------KELLERISHGYIPDEYLKRLAATLARIYNKAD 628 Query: 912 FNRDRSETIDKQ--VRRLDELCQD--AAGVNFNGFASRLREKGPHWSAEVFNKLPGFIAR 967 + + ++ L D G+ ++ Sbjct: 629 DPQRKEFVRLSHDDMKELSARIYDALEKGILPPFVSTDEPNNERKGLVAPLANHADARKY 688 Query: 968 LEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 L L N + +D ++S + ++ EAF+ ++ + AL+ Sbjct: 689 LLILAAGFVNT-----LMPGEDTLISKGFSIEE---AKNTTEAFEDFCKKYYDEIEALRI 740 Query: 1028 VINRPRD-LTRKGLVEL--QEWFDRQHFEESSLRKAWK-----------ETRNEDIAARL 1073 + N + +T L +L + HF L ++ D + Sbjct: 741 IYNNEGEPITYSMLKDLENRLKMANNHFTSKQLWNSYAIVNPKVVRRSITKEESDALTNI 800 Query: 1074 IGHIRRAAVGDALKPFEERVDHALTRIKG---------ENDWSSEQLSWLDRLAQALKEK 1124 I +R A ER+D +T K + + + +Q + R+ + Sbjct: 801 IQLVRFA------FHQIERLDSVVTTSKQFFNLWLGQNQREITDKQREVISRIVDYIASN 854 >UniRef50_A5TW30 Type I site-specific deoxyribonuclease restriction subunit n=6 Tax=Bacteria RepID=A5TW30_FUSNP Length = 1127 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 196/837 (23%), Positives = 325/837 (38%), Gaps = 138/837 (16%) Query: 236 RTLNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 N SEE++R L ID L KAGW D K + E K T + Sbjct: 190 NNNNFSEEDTRKLFIDTFLVKAGWNLDDKNIFEY--------------EVEGIKSTTSGK 235 Query: 295 GFADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 G DYVL+ P+A++EAK+ ++ ++ Y++ + F Sbjct: 236 GKIDYVLWGDNGIPLAIIEAKKAELNAKKGEFQALEYAEALEKKFN-------------- 281 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEW 413 P + TNG E + ++ + + + Sbjct: 282 -------------------FFPIRFVTNGFEIFI------------YENKNSIPRRVYGF 310 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 +R EELL+++ +K D E+ RYYQE AV+ + + G ++ LL MAT Sbjct: 311 YRKEELLKIIARRNEKI--VANDISINKEIIDRYYQERAVKKAIENYISGNRKSLLVMAT 368 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGL 533 G+GKTR AI+++ L + KR LFL DR +L +QAL F+ + + + + L Sbjct: 369 GSGKTRVAISIVDCLSRLNMVKRTLFLADRVALVKQALNNFKKSLPD-------YTLVDL 421 Query: 534 TDKFPEDSTKIHVATVQSLV----KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 + D+ KI +T Q+++ K + V +D I+VDEAHR Sbjct: 422 VSEKDRDNAKIVFSTYQTMMAESEKTREDGTDKYGVGAFDLIIVDEAHRSI--------- 472 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFG----EPVYRYTYRTA 641 Y + ++FD++ + LTATP +T ++F EP Y A Sbjct: 473 ----------YQKYGDLFEYFDSLILGLTATPKDEIDRNTFKVFDMNSKEPTDSYDLFEA 522 Query: 642 VIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRG 701 D +L+ P I+ T N E + E + ++ ++ N Sbjct: 523 AKDKYLL--LPKIKEGTLNYPENGIVYSKLSEEEKEKYESLFDEEDSMPEEISGDSLNSW 580 Query: 702 LVIPAFNRAVCNELTN--YLDPTGSQ--KTLVFCVTNAHADMVVEELRAAFKKKYPQLEH 757 V L Y +G + KT++F + HAD +VE F K Y L Sbjct: 581 FFNDGTTSKVLTTLMEEGYKIESGDKLGKTIIFAKNDRHADHIVE----IFNKLYKNLGG 636 Query: 758 DAIIKITGDADKDARKVQTMITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRS 816 + KIT +K VQ +I RF N P I V+VD+L TG+DIP I N+VF +KV+S Sbjct: 637 EFCQKITTKVEK----VQALIDRFVNPNSFPQIAVSVDMLDTGIDIPEILNLVFYKKVKS 692 Query: 817 RILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTL 871 + + QM GR TR + +K F I D +S E D + L + Sbjct: 693 KAKFWQMIGRGTRKYKDIYGIGKDKEDFLILDFCRNFSYFEMKDRFEEDNTKLTKSLSSK 752 Query: 872 VNEITDSETYKITEADGRSFAEHSH--EQLVAKLQRIIGLATFNRDRSETIDKQVRRLD- 928 + E +K+ + + + ++ E LV ++ +I +T V++ Sbjct: 753 IFENKIKMIFKLQDLEYQMDEKYKEFWENLVNEVYNLIASLNEENISVKTRISYVKKYKN 812 Query: 929 -ELCQDAAGVNFNGFASRLREK--GPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPI-F 984 EL ++ + + L E+ K I + + D + + + Sbjct: 813 IELLKNLEEKDVDEIIKNLSSLPFAIEEKTEMEKKFENLILKTQLKLFDNKKIENEKVEI 872 Query: 985 LDIDDEVVSVKSLYGDYD---------TPQDFLEAFDSLVQRS-PNAQPALQAVINR 1031 DI E+ ++ +++L+ D L + N L ++ Sbjct: 873 SDITKELSKKGTIKEIQKNANYIMKIIKDENYLKNIDILELENLRNIIEPLTIFLDS 929 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 15/200 (7%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCEN--- 61 SNF+FLKG Y + AE N P T+ R+ E + NI N Sbjct: 2 SNFDFLKGDFFDLYELCLEAEENCYTKPRTSAFYSRLALEFCVALVYKFENIQRPYNSTV 61 Query: 62 QHDLLRELGKIA-FVDDNILSVFHKLRRIGNQAVH-----------EYHNDLNDAQMCLR 109 +D + F + + + + +R+ GN A H D N A CL+ Sbjct: 62 LNDFINNKDFQCLFKNQSQVEGLNLIRKFGNSAAHILKNVIDNTTKTLTLDRNIALNCLK 121 Query: 110 LGFRLAVWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVE 169 F +W F +N+ E + + V++ + Sbjct: 122 GLFDFTLWIGYCYGSTLQMDDIKFDDKYIPKNISKPESANDIKVADNYVQDSVNNIKVIP 181 Query: 170 AQQQKLVALNGYIAILEGKQ 189 ++ + N + + ++ Sbjct: 182 VKKHNITINNNNFSEEDTRK 201 >UniRef50_C6BRN4 Type I site-specific deoxyribonuclease n=2 Tax=Proteobacteria RepID=C6BRN4_DESAD Length = 802 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 172/659 (26%), Positives = 258/659 (39%), Gaps = 135/659 (20%) Query: 239 NLSEEESRF-LIDAQLRKAGW-QADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 N +E E+R LID L GW + D ++ G G Q Sbjct: 4 NRNEAETRAELIDPALTSCGWGKVDESRVK----------REVITNGRLIGGGRRGKQDI 53 Query: 297 ADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 ADYVL + +AV+EAKR ++ + ++ RY+ Sbjct: 54 ADYVLVYKGQKLAVIEAKRESLSDTEGVQQAKRYADKL---------------------- 91 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGRE-YRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 K F YSTNG YR M+T + + + Sbjct: 92 ----------------KTRFAYSTNGHTVYRIDMETGA-------------ESHVDAFPT 122 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELG---LRYYQEDAVRAVEKAIVKGQQEILLAMA 472 P+EL + +E + F+ P + G RYYQ +A+ +AI G+ ILL +A Sbjct: 123 PQELWDETFAEENEWRNRFSSVPFEDKGGTWEARYYQHNAINQALEAIAAGKDRILLTLA 182 Query: 473 TGTGKTRTAIAMMFRLIQSQR-------------FKRILFLVDRRSLGEQALGAFEDTRI 519 TGTGKT A + ++L S+ RILFL DR L +QA +F Sbjct: 183 TGTGKTFIAFQLSWKLFHSRWNIKEWREGEEITRRPRILFLADRNILADQAYNSFSAF-- 240 Query: 520 NGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQ------SDEPMPVARYDCIVV 573 D I + I Q+ + + P +D I++ Sbjct: 241 PEDALVRISPDAIRKKGMVPKNGNIFFTIFQTFMSGIDAEGNSAPNFGDYPPDFFDFIII 300 Query: 574 DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPAL----HTVQI 628 DE HRG D+ S +R IL++F AV++ LTATP T Sbjct: 301 DECHRGGAKDE----------------STWRGILEYFAPAVQLGLTATPRRTNNADTYGY 344 Query: 629 FGEPVYRYTYRTAVIDGFLIDQDPPIQI--ITRNAQEGVYLSKGEQVERISPQGEVINDT 686 FG+PVY Y+ + + DGFL P ++ I E VY S E+I Sbjct: 345 FGDPVYTYSLKDGINDGFL----TPFKVVQIATTLDEYVYTSD----------DEIIQGE 390 Query: 687 LEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRA 746 +E+ + + +FNR + I A + +D + QKT+VF T HA ++ + + Sbjct: 391 VEEGKRYGENEFNRSIEIKAREEHRVKIFMDNIDQS--QKTIVFGATQHHAGILRDIINQ 448 Query: 747 AFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSIC 806 P + + + +K R I + N++ +P I+ T L+TGVD ++ Sbjct: 449 QKTCSDPNYCVRVVAQDLAEGEKWLR-----IFQDNEKTIPTILTTSQKLSTGVDARNVR 503 Query: 807 NIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTM-RPVVVRP 864 NIV LR V S I ++Q+ GR TRL K F I+D V Y + PV P Sbjct: 504 NIVLLRPVNSMIEFKQIVGRGTRLFD--GKDYFTIYDFVKAYEHFNDPEWDGEPVEPEP 560 >UniRef50_B1Y673 EcoEI R domain protein n=12 Tax=Bacteria RepID=B1Y673_LEPCP Length = 824 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 186/784 (23%), Positives = 297/784 (37%), Gaps = 121/784 (15%) Query: 247 FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLK 306 I + +AGW + R + + + + ADY LF L Sbjct: 15 KFIRPAIERAGWNGMDQIYREYPLRA-----GRVVVRGRKARRDASTVLRADYALFYKLN 69 Query: 307 -PIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQD 365 P+AVVEAK + V A + ++ Y+ D Sbjct: 70 IPLAVVEAKDASHAVGAGMAQAINYAALLD------------------------------ 99 Query: 366 TSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRN---MSKALPEWHRPEELLEM 422 +PF +++NG G +RD L ++ P EL Sbjct: 100 --------VPFSFASNG----------DGFIFRDATLADGVLERYLTLDQFPSPAELWAK 141 Query: 423 LGSEP--QKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 + + + A+ RYYQ +A+ +AI +G+Q LL MATGTGKT T Sbjct: 142 YCAWKGWTAEVRKVAEFDYAPAKTPRYYQLNAINRTVEAIAQGRQRALLVMATGTGKTYT 201 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQAL--------GAFEDTRINGDTFNSIFDIKG 532 A +++RL +S KRILFL DR L +Q + GA N + Sbjct: 202 AFQIIWRLWKSCAKKRILFLADRNILIDQTMVNDFRPFKGAMAKLSPNAKGVERVDAQGR 261 Query: 533 L-----------TDKFPEDSTKIHVATVQSLVKRTLQSD--EPMPVARYDCIVVDEAHRG 579 + T K + S +I+++ Q++ + +S+ + +D I+VDE HRG Sbjct: 262 VGVEDVTLAVNRTTKQVDTSYEIYLSLYQAVTGTSDESNIYKQFSPDFFDLIIVDECHRG 321 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQIFGEPVY 634 + S++R IL +F A ++ LTATP + FGEP+Y Sbjct: 322 SAAED----------------SSWREILSYFSSATQVGLTATPKETQDVSNSDYFGEPIY 365 Query: 635 RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFE 694 Y+ + + DG+L ++I G ++G + L +D+ + Sbjct: 366 TYSLKQGIEDGYLAPYKV-VRIDLDRDTFGWRPTEGMTDKL---------GNLIEDRVYT 415 Query: 695 VADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYP 753 AD NR LV+ + V ++T YL T + KT+VFC HA + + L A Sbjct: 416 GADMNRRLVLERRDEVVAAKITEYLKATDREAKTIVFCEDIDHAARMRQALSNA-NADIC 474 Query: 754 QLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 Q + +++ITGD + R++ I ++ P I T L++TGVD + IV + Sbjct: 475 QTQPRYVVQITGDNPEGKRELDNFID--PEKTYPVIATTSKLMSTGVDAQTCKLIVLDQN 532 Query: 814 VRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTM-RPVVV-RPKVELQTL 871 ++S L++Q+ GR TRL ++ KT F I D D PV V PK + Sbjct: 533 IKSMTLFKQIIGRGTRLREDLGKTWFTILDFKRATELFADKDFDGEPVQVYEPKGDEPVE 592 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRS---ETIDKQVRRLD 928 E+ D G A L G + ++ QV R Sbjct: 593 PPEVADPGDPAGQPDAGEEGAGDPPTGTDPPLGPFGGGDDAPPRKYVIGGQVNVQVARER 652 Query: 929 ELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLD-I 987 +A G + ++ E+ I+ L +FLD + Sbjct: 653 VQYLNADGKLVTESLRDYTRINLAKRFDSLDQFLQTWNSAERKAVLIDELERQGVFLDAL 712 Query: 988 DDEV 991 DEV Sbjct: 713 ADEV 716 >UniRef50_A5UR94 Type III restriction enzyme, res subunit n=5 Tax=Bacteria RepID=A5UR94_ROSS1 Length = 899 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 210/1019 (20%), Positives = 367/1019 (36%), Gaps = 213/1019 (20%) Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 + +E ++R L+D L +AGW T RP+ G+ E Sbjct: 1 MPRNESDTRAQLVDPLLNRAGWTRSQVTREHY--YRPDWQYTPGRVILRGGRVEREKPRV 58 Query: 297 ADYVL-FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 DY+L + PIAVVEAK ++ A L ++ RY++ + Sbjct: 59 VDYLLRYTEAFPIAVVEAKAEDLPAVAGLEQAKRYARENNLM------------------ 100 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 F Y+TNG E I D + ++ L E+ Sbjct: 101 --------------------FAYATNGHE----------IIEWD--GFTDTTRELKEFPS 128 Query: 416 PEELLEM-----------------------------LGSEPQKQNQWFADNPGMSELGLR 446 P+EL + +A + R Sbjct: 129 PDELWRRWELNTGVHSPKAAGRTIAELRPLYNAAVAAARQRNPLLHPYAPSSLTRGSEPR 188 Query: 447 YYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQR-------FKRILF 499 Y+QE A+R +++GQ+ ILL MATGTGKT TA+ ++++L++S +ILF Sbjct: 189 YFQEAAIRETLVRVMRGQKRILLTMATGTGKTFTAMQIVWKLVKSGWLHQQKGRAGKILF 248 Query: 500 LVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK---RT 556 L DR L QA AF + + D K + ++ Q+L R Sbjct: 249 LADREVLRNQAYNAFSPFASDHGDPRFMLDGK----RRLSLQYDLYFGIYQTLWATDPRG 304 Query: 557 LQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKI 615 + E P +D ++VDEAHR ++ ILDHF A+ + Sbjct: 305 KRLFEQFPHDFFDVVIVDEAHRSGF-------------------GTWKEILDHFESAIHL 345 Query: 616 ALTATPA----LHTVQIFG-------------------EPVYRYTYRTAVIDGFLIDQDP 652 +TATP + T F + Y Y+ + DGFL Sbjct: 346 GMTATPRQDENVDTYAYFCAEEPAIPLDPQDPSKGVLHQAAYTYSLSQGIEDGFLATYKV 405 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC 712 +++T ++G+++S+ + ++ + + +++ +F R + +P + Sbjct: 406 -HRVLTSIDKDGLHISRVLE----QGAEVIVPEDAKVREEYYTPNFEREIRLPDRTHTLV 460 Query: 713 NELTNYLDPTGS-QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 L L G KT+VFCV HA V L F L HD + I + + Sbjct: 461 KHLAKLLRQFGPLHKTMVFCVDVEHAREVARLLNNEFASLG--LGHDYAVPIVSE---EG 515 Query: 772 RKVQTMITRFNKE--RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 + Q + +F + P + T +LL+TGVD+P+ NIVF++ + S IL++Q+ GR +R Sbjct: 516 EQAQRWLNQFQDSDRKTPVVATTAELLSTGVDVPACRNIVFMKTISSPILFKQIIGRGSR 575 Query: 830 LCPEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVELQTLVNEITDSETYKITEAD 887 L P K F+I D + L+ RPV V P QT + + T Sbjct: 576 LDPATGKLWFRIIDYTNATRLLDPRWDCPTRPVQVAPDPNAQTGIAQGTVRLAKSSNVIQ 635 Query: 888 GRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLR 947 G S A ++ R T + R + L + +A R Sbjct: 636 GASVA-------------VMAGPNDQRGPILTDENGQYRFENLPVGEI--SIVVYAPRFN 680 Query: 948 EKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDF 1007 + H + + + ++ + + + I +E + + + T + + Sbjct: 681 RQQKHINTQDSTPVTLDFELSPIQQSGRQEIVVKNLQVTIAEEATFLVAGLNEPLTLEQY 740 Query: 1008 LEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNE 1067 ++ R+ TR L+ E + EE R+A E ++ Sbjct: 741 VDY---------------------SREKTRA-LISSWEKLVQIWREEKQRRQAQDELQHV 778 Query: 1068 ----DIAARLIGHIRRA---------AVGD-ALKPFEERVDHALTRIKG-ENDWSSEQLS 1112 D+ A ++ IR+ A G + ++R L + + +Q Sbjct: 779 SVYPDVLAEVLD-IRQTDPFDVLAYIAFGRHPILTRDQRAQAFLQQHADWLKAFPDQQRR 837 Query: 1113 WLDRLAQALKEKVV---LDDDVFKTGNFHRRGGKAMLQRTFDD--NLDTLLGKFSDYIW 1166 ++ L + + V ++ VF+ F GG + + F L + + ++ Sbjct: 838 VIEALLEQYRLSGVEEMVNPRVFRLPAFKPLGGLKGVSQQFGGGEALRQTVMELQRRLY 896 >UniRef50_Q07736 Type I restriction enzyme EcoAI R protein n=63 Tax=cellular organisms RepID=T1RA_ECOLX Length = 810 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 198/884 (22%), Positives = 345/884 (39%), Gaps = 164/884 (18%) Query: 239 NLSEEE--SRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 NL+E + ++ ++ A L AGW ++ + K + V +A T K Sbjct: 8 NLTEADIITKCVMPAILN-AGWDNTTQIRQEVKLRDGKVIVRGKVAARRTVKS------- 59 Query: 297 ADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 AD VL+ P+AV+EAK N ++ + + Y++ D Sbjct: 60 ADIVLYHKPGIPLAVIEAKANKHEIGKGMQQGIEYARLLD-------------------- 99 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNM----SKALP 411 +PF ++TNG G +RD L Sbjct: 100 ------------------VPFVFATNG----------DGFIFRDATAAEGECLEKQITLD 131 Query: 412 EWHRPEELLEML--------GSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKG 463 ++ P EL + P ++ D G S RYYQ A+ +A+ G Sbjct: 132 DFPSPAELWQKFCLWKGYTQAQLPVITQDYYDDGSGKS---PRYYQLQAINKTIEAVSNG 188 Query: 464 QQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDT 523 Q +LL MATGTGKT TA +++RL +S+ KRILFL DR L +Q + Sbjct: 189 QNRVLLVMATGTGKTYTAFQIIWRLWKSKNKKRILFLADRNILVDQTKNN------DFQP 242 Query: 524 FNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS--DEPMPVARYDCIVVDEAHRGYI 581 F + + ++ + + + +IH+A Q++ + + +D IV+DE HRG Sbjct: 243 FGTA--MTKVSGRTIDPAYEIHLALYQAITGPEEDQKAFKQVAPDFFDLIVIDECHRGSA 300 Query: 582 LDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATP----ALHTVQIFGEPVYRY 636 + SA+R ILD+F A +I LTATP + + FG+PVY Y Sbjct: 301 SED----------------SAWREILDYFSSATQIGLTATPKETHEVSSTDYFGDPVYVY 344 Query: 637 TYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVA 696 + + + DGFL +++ +G +KG+ GEVI DD+ + Sbjct: 345 SLKEGIEDGFLAPYKV-VRVDIDVDLQGWRPTKGQ----TDLNGEVI-----DDRIYNQK 394 Query: 697 DFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQL 755 DF+R +VI V +T+YL T KT+VFC HA+ + L + + Sbjct: 395 DFDRTMVIDERTELVARTITDYLKRTNPMDKTIVFCNDIDHAERMRRALVN-LNPEQVKK 453 Query: 756 EHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVR 815 ++KITGD + ++ I K+ P I T +L+TTGVD + +V + ++ Sbjct: 454 NDKYVMKITGDDEIGKAQLDNFIN--PKKPYPVIATTSELMTTGVDAKTCKLVVLDQNIQ 511 Query: 816 SRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLES----------VDTMRPVVVRPK 865 S ++Q+ GR TR+ K F I D +DT + P+ Sbjct: 512 SMTKFKQIIGRGTRIDERYGKLWFTILDFKKATELFADERFDGIPEKVMDTTPEDIADPE 571 Query: 866 VELQTLVNEITDSET-------------YKITEADGRSFAEHSHEQLVAKLQRIIGLATF 912 + + + EI++ + Y++T+ D E+ + K Sbjct: 572 SDFEEKLEEISEHDEEQVTGVDEPPAPPYQVTDTDDVGPLPEEDEKKIRKFHVNGVAVGV 631 Query: 913 NRDRSETIDKQVRRLDELCQD-------AAGVNFNGFASRLREKGPHWSAEVFNKLPGFI 965 R + D + + E +D + + F + ++ + + G I Sbjct: 632 IAQRVQYYDADGKLVTESFKDYTRKTLLKEYASLDDFTRKWQDADRKEAIIHELEQQGII 691 Query: 966 ARL--EKLKTDINNLN--------DAPIFLDIDDEVVSVKSLYGDY-DTPQDFLEA-FDS 1013 + E++ D++ + P+ E V ++ + Y + Q L+ D Sbjct: 692 WEVLAEEVGKDLDPFDMLCHVVYGQPPLTRKERAENVRKRNYFTKYSEAAQAVLDNLLDK 751 Query: 1014 LVQRSPNAQPALQAVINRPRDL--TRKGLVELQEWFDRQHFEES 1055 ++Q + +P D T +++ + DR + ++ Sbjct: 752 YADAGVQEIESIQVLKLKPFDSMGTLPEIIK-TGFGDRNGYNQA 794 >UniRef50_B8CZR6 EcoEI R domain protein n=5 Tax=Firmicutes RepID=B8CZR6_HALOH Length = 770 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 191/835 (22%), Positives = 321/835 (38%), Gaps = 125/835 (14%) Query: 238 LNLSEEES-RFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 + L+E E I ++ AGW + + LR E Sbjct: 1 MALTETEVCMRYITPAIQNAGWDINKQVLR-------EYSFTDGRVIVRGKLVNRAKPKR 53 Query: 297 ADYVL-FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADY+L + P+A++EAK++ + + A + ++ Y++ D Sbjct: 54 ADYILQYKSNIPLAIIEAKKDTLPIGAGMQQALEYAEILD-------------------- 93 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 IPF YS+NG+ G D R AL ++ Sbjct: 94 ------------------IPFVYSSNGK----------GFIEHDRNSGREKEIALEDFPS 125 Query: 416 PEELLEMLGSEPQ---KQNQWFADNPG--MSELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 PEEL + + +Q Q + + ++ RYYQ A+ +AI KGQ+ ILL Sbjct: 126 PEELWGRFSKQKEFTREQEQLYLQDYFYQINYKTPRYYQRVAINRAVEAIAKGQKRILLV 185 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDI 530 MATGTGKT TA ++ RL ++ + KRILFL DR L +Q I GD + Sbjct: 186 MATGTGKTFTAFQIIHRLWKAGKKKRILFLADRNILVDQT--------ITGDFSPFGDKM 237 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTL--QSDEPMPVARYDCIVVDEAHRGYILDKEQTE 588 + + +I++A QS+ ++ E +D +V+DE HRG Sbjct: 238 IKIQRGNVSHAHEIYLALYQSMTGPEEWQKTFEEYSPDFFDLVVIDECHRGSARAN---- 293 Query: 589 GELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA----LHTVQIFGEPVYRYTYRTAVI 643 SA+R +L++FD A + LTATP + T FGEP+Y Y+ + + Sbjct: 294 ------------SAWRVVLEYFDQATHLGLTATPKEDADVSTQGYFGEPIYTYSLKQGIE 341 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV 703 DGFL + ++ G KG+ + + +D+++ V DF+R L+ Sbjct: 342 DGFLAPYKVVRMGLDKDLM-GFRPIKGQTDKY---------GRVMEDREYYVNDFDRELI 391 Query: 704 IPAFNRAVCNELTNYLDPTGSQ---KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAI 760 + + V E+T YL KT+VFC HA+ + + L + + + Sbjct: 392 LEKRHELVAKEITRYLKEELQDRFAKTIVFCQDIEHAENMRQALVNE-NADLVKQNYKYV 450 Query: 761 IKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 ++ITGD + ++ I E P I T L+TTGVD + IV + S + Sbjct: 451 MRITGDNPEAKIQLDNFIE--PSETYPVIATTSKLMTTGVDAQTCKLIVLDMTINSMSEF 508 Query: 821 EQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMR-PVVVRPKVELQTLVNEITDSE 879 +Q+ GR TRL P+ K F I D D P+ P E + Sbjct: 509 KQIIGRGTRLRPDYGKYYFTILDFRGATRLFADPDFDGYPI---PDDEDGDNYPGNDVNG 565 Query: 880 TYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNF 939 +I D E + V ++ R + +D + + E D N Sbjct: 566 GNRIPGNDEGGDEEGRVKYYVDDVE-----VNLINKRVQYLDANGKLVSESYVDYTKKNI 620 Query: 940 NGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDD-EVVSVKSLY 998 + L + W+ E K L + ++ L DIDD +++ Sbjct: 621 RKQYATLDDFIRRWTEE--EKKQVIYDELLEQGIILDELRKEVGKEDIDDFDLICHIVFD 678 Query: 999 GDYDTPQDFLEAFDS---LVQRSPNAQPALQAVINRPRDLTRKGLVELQ-EWFDR 1049 T + + + A+ L+ ++++ ++ + +++ D Sbjct: 679 AKPLTKSERINNVKKRNYFTKYGEQARKVLEILLDKYKNSNITEIEDIKILKLDE 733 >UniRef50_Q167L8 Type I restriction enzyme subunit, putative n=11 Tax=Bacteria RepID=Q167L8_ROSDO Length = 782 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 182/785 (23%), Positives = 287/785 (36%), Gaps = 129/785 (16%) Query: 240 LSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG--- 295 +E ++R ID L AGW+ G V++ WP G Q Sbjct: 10 ETEADTRAQRIDPALAAAGWE--------GAGKIDGARVHREEMLWPGRIMSGGGQNAPK 61 Query: 296 FADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADYVL + +AV+EAK+ ++ ++ Y++ Sbjct: 62 PADYVLRMKGHVMAVLEAKKASLSYTEGRGQALDYAR----------------------- 98 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNG-REYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 R F Y TNG R Y + T + + Sbjct: 99 ---------------RIGARFAYCTNGLRTYEIDLNTGT-------------EGEVEAVP 130 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELG---LRYYQEDAVRAVEKAIVKGQQEILLAM 471 P+ L E F P ++ G RYYQ AV AV +A+ + ++ ILL + Sbjct: 131 SPDVLWERCYPTGNAWRDRFGQIPFETDGGKWQPRYYQAAAVNAVLEALAQDEKRILLTL 190 Query: 472 ATGTGKTRTAIAMMFRLIQSQR--------FKRILFLVDRRSLGEQALGAFEDTRINGDT 523 ATGTGKT A + ++L QS+ RILFL DR L +QA +F D Sbjct: 191 ATGTGKTSIAFQIAWKLFQSRWNLSGAPTRRPRILFLADRNILADQAYNSFSAFAP--DA 248 Query: 524 FNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL-----QSDEPMPVARYDCIVVDEAHR 578 + I + + + Q+ + + +D I++DE HR Sbjct: 249 LSRINPKEISKKGKMPRNASVFFTIFQTFMTENKSGEAEFNFREYEPDFFDFIIIDECHR 308 Query: 579 GYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPAL----HTVQIFGEPV 633 G D+ S++R IL++F AV++ LTATP T FGEPV Sbjct: 309 GGAKDE----------------SSWRGILEYFAPAVQLGLTATPKRKVNADTYTYFGEPV 352 Query: 634 YRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDF 693 Y Y R + DGFL P ++ + Y+ P+ EV+ ++ D ++ Sbjct: 353 YTYALREGIDDGFL----TPFKVRQMASTIDTYV--------YDPEDEVVGGDVDPDHEY 400 Query: 694 EVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYP 753 + N +VIPA ++ +E + ++P QKTLVFC T HA V + + + P Sbjct: 401 TEDEINAKIVIPAREQSRIHEFMDQINP--RQKTLVFCATQNHAAAVCDYINQIKDIEDP 458 Query: 754 QLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 ++ R+ Q N+ +P I+ T L+TGVD ++ NIV +R Sbjct: 459 HYCERVTANDGALGEQHLREFQD-----NERSIPTILTTSQKLSTGVDARNVRNIVLMRP 513 Query: 814 VRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVN 873 ++S + ++Q+ GR TR K F I+D V Y + P Sbjct: 514 IKSMVEFKQIVGRGTRTFE--GKDFFTIYDFVKAYEHFNDPEWDGPPEPPDTPGTPPKPP 571 Query: 874 EITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQD 933 + D E +L +R + + D ++ +E + Sbjct: 572 KPGDPVPPGDPPPTPPEPEEKIVIKLADGKER--RIKYIATTSYYSHDGKMISGEEFMEQ 629 Query: 934 AAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVS 993 G + + E WS K F+ L D L D +D + V Sbjct: 630 LFG-DLGDLVTGEEELRLIWSDP--EKRVQFLKVLADRGYDTGRLEDMKRLIDAPNSDVF 686 Query: 994 VKSLY 998 Y Sbjct: 687 DVLAY 691 >UniRef50_C9KLJ8 Type I restriction-modification system, R subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLJ8_9FIRM Length = 772 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 178/647 (27%), Positives = 265/647 (40%), Gaps = 114/647 (17%) Query: 240 LSEEESR-FLIDAQLRKAGWQADSKTLRFSKGA-RPEPGVNKAIAEWPTGKDETGNQGFA 297 LSEE+ + I L + W A + + A R N E P FA Sbjct: 8 LSEEDIKHRYITPALERV-WPASDIRMELAITAGRVNIKGNMEARERP---------KFA 57 Query: 298 DYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DYVL+ P+AVVEAK NN + + ++ Y++ D Sbjct: 58 DYVLYTESGHPLAVVEAKDNNHTISFGMQQAKAYAQMMD--------------------- 96 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 +PF YS+NG G D +L + P Sbjct: 97 -----------------LPFAYSSNG----------DGFVEYDFLTGIECELSLDAFPTP 129 Query: 417 EELLEMLGSEPQ--KQNQWFADNPGM---SELGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 EL+ E ++ + P RYYQ AV AI +GQ+ +LL M Sbjct: 130 AELIARFKEEGHLTEEQVRVIEQPFYVSEGTFAPRYYQRVAVDRTLDAIARGQKRLLLVM 189 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIK 531 ATGTGKT TA +++RL ++ K+IL+L DR L +Q++ +D R + + Sbjct: 190 ATGTGKTYTAFQIIYRLRKAGLGKKILYLADRNILVDQSIQ--QDFRPLASVIHKVNYAS 247 Query: 532 GLTDKFPEDSTKIHVATVQSLVKRTLQS--DEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 D+ S +++ + Q L + E +D IVVDE HRG Sbjct: 248 D--DRTTITSYEVYFSLYQQLFGENDEERFRELFRPDFFDLIVVDECHRGSAKAD----- 300 Query: 590 ELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA----LHTVQIFGEPVYRYTYRTAVID 644 S +R+ILD+FD A++I +TATP + + FGEPVY Y+ R + D Sbjct: 301 -----------SRWRKILDYFDTAIQIGMTATPKETAYVSNIDYFGEPVYTYSLRQGIDD 349 Query: 645 GFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVI 704 GFL P ++I V ++ GE Q + +ED + + D++ +V+ Sbjct: 350 GFL----APFRVIN------VQMNIGEGWRPCKGQRDFFGREIED-RVYNNTDYDYNIVL 398 Query: 705 PAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEEL---RAAFKKKYPQLEHDAI 760 R V +TNYL T KT+VFC A A+ + L A KKYP + Sbjct: 399 EDRIREVAARITNYLLHTDRMAKTIVFCADEAAAERMRHALAQQNADMMKKYPNY----V 454 Query: 761 IKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 ++ITG ++ I+ P I T LL+TGVD + IV + S ++ Sbjct: 455 VRITGSDPYGKSQLGYFISV--ASPTPVIATTSQLLSTGVDCKMVRLIVLDENITSMTMF 512 Query: 821 EQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVE 867 +Q+ GR TRL + K SF I D + D P++ P E Sbjct: 513 KQIIGRGTRLRYDEGKRSFVIMDFRGVTRLFADPDWDGPIIEDPGFE 559 >UniRef50_B3H2F8 Type I restriction enzyme R protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B3H2F8_ACTP7 Length = 787 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 179/838 (21%), Positives = 313/838 (37%), Gaps = 110/838 (13%) Query: 239 NLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 +SE + R I ++ AGW + +S + I + T A Sbjct: 9 QMSEADIRSKFITPAIKNAGWSDRHISEEYSFKVDKPFTDGQMIVDPKTKLASRKEAKRA 68 Query: 298 DYVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DY+L+ IAVVEAK L ++ Y++ Sbjct: 69 DYILYQSKNHKIAVVEAKDYKHSPRDGLQQAMDYARDL---------------------- 106 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 F YS+NG E+ D + + ++ P Sbjct: 107 ----------------GASFAYSSNGDEFV----------EHDFITGVQRTLPMSQFPTP 140 Query: 417 EELLEMLGSEPQKQNQWFADNPGMSE-----LGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 +EL E + + P + RYYQE+A+ +A+ KG+ ILL M Sbjct: 141 QELSERWSKQYTPEELKIIQQPYYTSASDNFKEPRYYQENAINLTIEAVAKGRNRILLVM 200 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIK 531 ATGTGKT TA ++ RL S +++LFL DR L +Q + +D + D + Sbjct: 201 ATGTGKTYTAFQIIHRLKASGAKRKVLFLADRNVLVDQPMT--QDFKPFKD------KMV 252 Query: 532 GLTDKFPEDSTKIHVATVQSLVKRTLQS-DEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 +++K + S ++++A Q L T + + +D I++DE HRG + Sbjct: 253 KVSNKKLDSSFEVYLALYQQLDGETDNELFKQFQPSFFDLIIIDECHRGSAKED------ 306 Query: 591 LQFRSQLDYVSAYRRILDHFD-AVKIALTATPA----LHTVQIFGEPVYRYTYRTAVIDG 645 S +R IL++F+ A I +TATP + FG+P+Y Y+ + ++ DG Sbjct: 307 ----------SNWRAILNYFNEATHIGMTATPKETADASNISYFGDPIYTYSLKQSIEDG 356 Query: 646 FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIP 705 FL I++ +G +KG GE++ D L + + DF+ +++ Sbjct: 357 FLAPYRV-IRVDLDCDLKGWRPTKG----LTDKNGELVEDRL-----YTIKDFDYNIILN 406 Query: 706 AFNRAVCNELTNYLDPTGS-QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT 764 V +T +L T KT+VFC HA +V EL I +IT Sbjct: 407 DRTCLVAERITEFLKKTNRLDKTIVFCANINHAQRMVAELSR-LNADMLAKNPKYIRQIT 465 Query: 765 GDADKDARKVQTMITRFNKER-LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQM 823 GD ++ N+ P I VT L+TTGVD + +V ++S ++Q+ Sbjct: 466 GDQTGKNDDLEAFCDVQNEGNAYPVIAVTSKLMTTGVDSKTCKLVVLDANIQSMTEFKQI 525 Query: 824 KGRATRLCPEVNKTSFKIFDCVDIYSTLESV----DTMRPVVVRPKVELQTLVNEITDSE 879 GR TRL + K F I D + D + + + N ++ Sbjct: 526 IGRGTRLRTDAGKEFFTILDFRGVTRLFADPAFDGDPVAILELPENKPFDDKENNEKNNR 585 Query: 880 TYKITEADGRSFAEHSHEQLV-AKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVN 938 T K T+ E+ +V A ++ L + +E + + +D Q + Sbjct: 586 TSKPTDQVKEDGGEYKPAIVVEAGSLKLRILDEKVQYLNEQGELVLEDIDIFSQREIRKD 645 Query: 939 FNGFASRLRE-KGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVK-S 996 F+ + + F ++ L K + +D I + + + Sbjct: 646 FSSYEQFQQSWTTSGEIFLKFYTDEKWLNSLRKKNQFGSQFDDYDIIRKVAYGKMPMTKQ 705 Query: 997 LYGDYDTPQDFLEAFDSLVQRSPNAQPAL--QAVINRPRDLTRKGLVELQEWFDRQHF 1052 + D+L + + L + V + +DL++ L++ ++ Sbjct: 706 ERIEKAKKSDYL---AQYSEENRQVLGLLLDEYVKSGTKDLSKTELLQTPKFRTFGGL 760 >UniRef50_Q7MPU7 Type I site-specific restriction-modification system, R (Restriction) subunit n=11 Tax=cellular organisms RepID=Q7MPU7_VIBVY Length = 817 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 183/805 (22%), Positives = 311/805 (38%), Gaps = 128/805 (15%) Query: 231 DQAIKRTLNLSEEES-RFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKD 289 K ++ L+E ++ R + +L+++GW+ + + + ++ K Sbjct: 15 TARKKNSMALNEADTCRVYVTPKLKESGWENNPSAIT------EQYTFTDGRVQFKGSKV 68 Query: 290 ETGNQGFADYVL-FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYS 348 + G Q ADY+L + PIAVVEAK N V + ++ Y++ Sbjct: 69 QRGEQKRADYLLKYTRDFPIAVVEAKPENSPVGQGMQQAKDYAEIL-------------- 114 Query: 349 PDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSK 408 + F YSTNG E + T + Sbjct: 115 ------------------------GLKFAYSTNGHEIL------------EFDYTTGEEQ 138 Query: 409 ALPEWHRPEELLEML----GSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ 464 L + P+EL + L G + + + + +S RYYQ+ A+ +++++G+ Sbjct: 139 LLSRFPTPDELFKRLCGDEGIKDEDLDTLLSPYHHVSGYSPRYYQQIAINRAVQSVLQGK 198 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQSQR-------FKRILFLVDRRSLGEQALGAFEDT 517 + L+ MATGTGKT A + ++L ++ RILFL DR L + + Sbjct: 199 KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKD--KTF 256 Query: 518 RINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK--RTLQSDEPMPVARYDCIVVDE 575 GD + I K + S +I+ A QS+ R + P +D I++DE Sbjct: 257 TPFGDARHKIEGGKVVK------SREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDE 310 Query: 576 AHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATP----ALHTVQIFG 630 HRG D S +R IL++F A +I +TATP T + FG Sbjct: 311 CHRGSARDN----------------SNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG 354 Query: 631 EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDD 690 P+Y Y+ R + DGFL ++I+ G SKG+ + G I D Sbjct: 355 NPIYTYSLRQGIDDGFLAPYRV-HRVISEVDAAGWRPSKGD----VDRFGREIPD----- 404 Query: 691 QDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS-QKTLVFCVTNAHADMVVEELRAAFK 749 +++ DF R + + A A LT+++ T KT+VFCV HAD + L Sbjct: 405 GEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNN-LN 463 Query: 750 KKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIV 809 + D + ++T + K + + P I+ T LLTTGVD P+ N+V Sbjct: 464 SDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETST-PVILTTSQLLTTGVDAPTCKNVV 522 Query: 810 FLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD-IYSTLESVDTMRPVVVRPKVEL 868 R V S ++Q+ GR TRL + K F I D D P++E Sbjct: 523 LARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYTGSATQNFADPDFDG----YPEIED 578 Query: 869 QTLVNEITDS--ETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRR 926 + +++E + + E++ AE + E V + R +D + Sbjct: 579 EVVIDEDGEEVVDDTLTPESEVLEVAEETGEYEVNTEGEGADDEEEHEPRKYYVDGGSVK 638 Query: 927 LDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNL-NDAPIFL 985 + + + ++ K+ + L++LK N I L Sbjct: 639 ITSHLVYELDEDGKQL------RVIQYTDYTAEKVKTLFSSLDELKDSWANPLKREEIIL 692 Query: 986 DIDDEVVSVKSL-YGDYDTPQDFLE 1009 ++ + + + L T D L+ Sbjct: 693 ELQERGIQFEDLVAESGKTDADPLD 717 >UniRef50_C9RRX7 Type I site-specific deoxyribonuclease n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRX7_FIBSS Length = 781 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 162/647 (25%), Positives = 262/647 (40%), Gaps = 115/647 (17%) Query: 240 LSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 ++E ++R ID +L++A W+ + +++ + E IA G E + D Sbjct: 1 MNESDTRRKKIDPKLKEALWEVTPDSAIYTEQSAYE------IAPGRIGHAERNPK-KID 53 Query: 299 YVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 Y+L IA+VEAK++ +DV + ++ Y+ Sbjct: 54 YLLVYKGIKIAIVEAKKDELDVSEGVPQAKEYA--------------------------- 86 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 +R I F YS NG IW D++ + + P+E Sbjct: 87 -----------ERMNIRFTYSCNG----------DKIWAIDMQ--TGEEGFVDAFPTPQE 123 Query: 419 LLEMLGSEPQKQNQWFADNPGMSE--LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 L E L E P + RYYQE AV V AI + Q +LL +ATGTG Sbjct: 124 LWERLYPENNPLRDKLNAVPFNRDGGKSPRYYQEIAVNNVMDAISRKQDRVLLTLATGTG 183 Query: 477 KTRTAIAMMFRLIQSQR-------FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 KT A + +++ ++ RILFL DR L QAL F + + I Sbjct: 184 KTYIAFQICWKIFKAHWNVDGTERLPRILFLADRNILSNQALNDFGQF--DENAMCRITP 241 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSD--EPMPVARYDCIVVDEAHRGYILDKEQT 587 K I+ + Q+++ E P +D +++DE HRG D+ Sbjct: 242 ESIAKSKGVPKGPSIYFSIFQTMMTSLNGKFVYENYPEDFFDLVIIDECHRGAANDE--- 298 Query: 588 EGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALH----TVQIFGEPVYRYTYRTAV 642 S +R ILD+F A + LTATP + T + FG+PVY Y+ + + Sbjct: 299 -------------SRWRDILDYFQRAYHLGLTATPKKNENANTYEYFGKPVYVYSLKQGI 345 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRG- 701 DGFL +I + N +Y P+ +V + ++ ++ + DF G Sbjct: 346 EDGFLTPYRV--RISSSNIDNYIY----------DPEDDVESGEIDPNKIYTETDFYHGN 393 Query: 702 LVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 + I + E +DP +KT+VF T AHA ++ + + +K + Sbjct: 394 IKIRERDEFRVEEFLKQIDP--DEKTIVFGATQAHAAILRDLINQHSRK----PNVNYCK 447 Query: 762 KITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 ++T D N++ LP I+ T L+TGVD ++ NIV +R V + I ++ Sbjct: 448 RVTSDDGDKGEADLKTFQD-NEKLLPTILTTSQKLSTGVDAKNVRNIVLMRPVNNIIEFK 506 Query: 822 QMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTM-RPVVVRPKVE 867 Q+ GR TRL K F I+D V + P++ P+ Sbjct: 507 QIIGRGTRLFD--GKYFFTIYDFVGASKNFSDPEWDGEPIIDTPEPP 551 >UniRef50_B9MGJ1 EcoEI R domain protein n=4 Tax=Proteobacteria RepID=B9MGJ1_DIAST Length = 827 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 166/674 (24%), Positives = 261/674 (38%), Gaps = 122/674 (18%) Query: 247 FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVG-L 305 I + +AGW + R + + + + ADY LF Sbjct: 14 KFIRPAMEQAGWDGMDQIYREYPLRA-----GRVVVRGRQAQRDKSTVLRADYALFFKAN 68 Query: 306 KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQD 365 P+AVVEAK N V A + ++ +Y++ Sbjct: 69 IPLAVVEAKDNQHAVGAGMGQAIQYAELL------------------------------- 97 Query: 366 TSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRN---MSKALPEWHRPEELLEM 422 +PF +++NG G +RD + L E+ P EL Sbjct: 98 -------GVPFSFASNG----------DGFVFRDATLADGVLERNLTLEEFPSPAELWSR 140 Query: 423 LGSEP--QKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 + + A RYYQ +AV +AI GQ +LL MATGTGKT T Sbjct: 141 YCAWKGWSAEESRIAGFDYAPNKTPRYYQLNAVNRAVEAIAAGQDRVLLVMATGTGKTYT 200 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQAL-GAFEDT---------------RINGDTF 524 A +++RL +S KRILFL DR L +Q + F R++ Sbjct: 201 AFQIIWRLWKSGAKKRILFLADRNILIDQTMVNDFRPFKGAMAKLSPNAKGVERVDAQGA 260 Query: 525 NSIFDIK---GLTDKFPEDSTKIHVATVQSLVKRTLQSD--EPMPVARYDCIVVDEAHRG 579 S+ D+ T K + S +I+++ Q++ + + + +D IVVDE HRG Sbjct: 261 VSVEDVDLAVNKTTKLVDKSYEIYLSLYQAVTGTEEERNIYKQFSPDFFDLIVVDECHRG 320 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQIFGEPVY 634 + SA+R IL +F A +I LTATP + FGEPVY Sbjct: 321 SAAED----------------SAWRDILTYFAGATQIGLTATPKETKDVSNTDYFGEPVY 364 Query: 635 RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFE 694 Y+ + + DG+L P ++I + + + + G I D + + Sbjct: 365 TYSLKQGIEDGYL----APYKVIRVDLDKDTFGWRPT-AGMTDKHGHAIEDRI-----YT 414 Query: 695 VADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYP 753 AD NR LV+ + V ++T YL T KT+VFC HA + + L A Sbjct: 415 GADMNRKLVLEQRDAVVAAKITEYLKATDRYAKTIVFCEDIDHAARMRQALSNA-NADLC 473 Query: 754 QLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 + +++ITGD + ++ I ++ P I T L++TGVD + IV + Sbjct: 474 ATQPKYVVQITGDNIEGKLELDNFID--PEKTYPVIATTSKLMSTGVDAQTCKLIVLDQT 531 Query: 814 VRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT-------MRPVVVRPKV 866 ++S L++Q+ GR TRL ++ KT F I D D P +P Sbjct: 532 IKSMTLFKQIIGRGTRLREDLGKTWFTILDFKRATELFADKDFDGEPVQIYEPGSGQPVA 591 Query: 867 ELQTLVNEITDSET 880 + + + Sbjct: 592 PPEPAMPGDIPGDA 605 >UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax=Cyanothece sp. PCC 8802 RepID=C7QWT4_CYAP0 Length = 1005 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 181/742 (24%), Positives = 288/742 (38%), Gaps = 134/742 (18%) Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGNQG 295 + SE +R LID QL KAGW + ++ E P G D G Sbjct: 1 MTRSEATTRKDLIDPQLAKAGWNVND--------------THQVGLEIPVDGYDAQPWNG 46 Query: 296 FADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 DY L+ IAVVEAKR + D + Y + Sbjct: 47 VTDYCLYSPNGDVIAVVEAKRQSRDPRVAEQQVRHYVTEIEK------------------ 88 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 + PF + TNG + ++ DV + + + + + Sbjct: 89 ---------------HQSFRPFAFLTNG----------NITYFWDVEN--SPKRQVAGFF 121 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 +L +L K N + ++ R YQ++A++ V + G + L+ MATG Sbjct: 122 SLRDLENLLYIRQNKINP--STLVVNRQISGRTYQQEAIQRVIERFEDGFRRGLIVMATG 179 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLT 534 TGKTRT + ++ LI+S + +LF+ DR L QAL + + + I Sbjct: 180 TGKTRTIMGLIDLLIRSNHLRTVLFVADRDVLVRQALDDNFRVYLPDEPSDRIRSYN--- 236 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 + S +++V T+Q+L K +D I+ DE HR Sbjct: 237 ---IDYSKRLYVGTLQTLTK----CCRNFTPGFFDLIIFDECHRSI-------------- 275 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGF 646 + +R +LD+FD + LTATPA +T Q F G P + Y Y+ A+ DG Sbjct: 276 -----YNQFREVLDYFDGKILGLTATPATAIDRNTFQAFHCFEGIPTFLYEYQQAINDGN 330 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 L+D Q T +EG+ G ++ + DD D+E + + + Sbjct: 331 LVDYS-LYQAQTHFQREGIR---GANLDEEDRNMLIEQGIDPDDIDYEGTELEKKVSNRD 386 Query: 707 FNRAVCNELTN--YLDPTGS--QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 R E+ + D +G KT++F VT HA L+ F + YPQ + Sbjct: 387 TLRKQWTEIMEVCHKDESGQLPGKTIIFAVTQKHAH----RLKEVFDEMYPQFSEMVQVI 442 Query: 763 ITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 ++ + K + +I +F KE +P I ++VDL+ TGVDIP + N+VF++ V+S I +Q Sbjct: 443 VS-----EMEKTKDLIDKFKKEEMPRIAISVDLMDTGVDIPEVVNLVFMKPVQSFIKLQQ 497 Query: 823 MKGRATR---------LCPEVNKTSFKIFDCVDIYSTLESVDTMR----PVVVRPKVELQ 869 M GR TR P K F I D + + D + P+ V+ Sbjct: 498 MIGRGTRNHEACKYLNRLPNGKKDEFLIIDFWENEFDRDPSDEVISQNLPITVKLFNTRL 557 Query: 870 TLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDE 929 L+ D++ ++ + +E L+ KL I G R I V +D Sbjct: 558 RLLGYYLDNQES--SDEQNQDVKGDLYEYLLGKLN-ISGRNGQFRTPRHIIRLMVEMVDP 614 Query: 930 LCQDAAGVNFNGFASRLREKGP 951 + G G L Sbjct: 615 KPNERIGDLAAGTCGFLVNSYQ 636 >UniRef50_A8ZXE8 Type III restriction protein res subunit n=9 Tax=Bacteria RepID=A8ZXE8_DESOH Length = 936 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 157/696 (22%), Positives = 290/696 (41%), Gaps = 109/696 (15%) Query: 238 LNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 + +E ++R LID L ++GW ++ + + + IAE T + F Sbjct: 1 MTKTEAQTRSELIDKHLAQSGWNVKDP-MQVVEEFDILMALPEGIAEPRTPYE---GHQF 56 Query: 297 ADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 +DYVL +P+AVVEAK+++ D ++ +Y E Sbjct: 57 SDYVLLGKDGRPLAVVEAKKSSKDAAIGREQAKQYCYNIQKQLGGE-------------- 102 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 +PFC+ TNG E ++ D+ + + + + Sbjct: 103 ------------------LPFCFYTNGLET----------YFWDLDN--YPPRKVVGFPT 132 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 ++L ++ ++ + + R YQ A+RAV + I + +++ LL MATGT Sbjct: 133 RDDLER--FQYIRRNHKPLTQELINTAIAGRDYQIRAIRAVLEGIEQKKRDFLLVMATGT 190 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKTRT+IAM+ L+++ ++ LFLVDR +L EQAL AF++ + + ++ + Sbjct: 191 GKTRTSIAMVDALMRAGHAEKALFLVDRIALREQALAAFKEHLPHEPRWPNV------GE 244 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 K +I+++T +++ + + +D IV+DE+HR Sbjct: 245 KLIAKDRRIYISTYPTMLNIIRDESQYLSPHFFDFIVIDESHRSI--------------- 289 Query: 596 QLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVID--G 645 + Y ILD+F + + LTATP +T +IF G P + YT+ A + Sbjct: 290 ----YNTYGEILDYFKTITLGLTATPTDIIDHNTFRIFHCEDGLPTFAYTFEEAANNVPP 345 Query: 646 FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIP 705 +L ++I T+ +EG+ + + ++ + +FE + ++ Sbjct: 346 YLCSFQV-MKIQTKFQKEGI---SKRTISLEDQKKLLLEGKDVAEINFEGTQLEKTVINK 401 Query: 706 AFNRAVCNELTN--YLDPTG--SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 N + E D G KT+ FC T AHA + F K YPQ + + Sbjct: 402 GTNTLIVKEFMEECIKDHNGVMPGKTIFFCSTIAHARRM----EDIFDKLYPQHKGELAK 457 Query: 762 KITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 + + + K ++ +F +P + ++VD+L TG+D+ I N+VF + V S + Sbjct: 458 VLVSEDPRVYGKG-GLLDQFTNSDMPRVAISVDMLDTGIDVREIVNLVFAKPVYSYTKFW 516 Query: 822 QMKGRATRLCP-------EVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNE 874 QM GR TRL + K F I DC D + + + + + + L + Sbjct: 517 QMIGRGTRLLEIAKPKPWCIEKDVFLILDCWDNFEYFKLQPKGKELKQQ--LPLPVRLVG 574 Query: 875 ITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLA 910 + + K T+ + E + ++ + + Sbjct: 575 LRLDKIEKATDTAQTTITEREIGKFRKQISELPQTS 610 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 91/261 (34%), Gaps = 24/261 (9%) Query: 895 SHEQLVAKLQRIIGLATFNRDRSETIDKQ------VRRLDELCQDAAGVNFNGFASRLRE 948 + + +R + + R R E + V ++ +L V R + Sbjct: 653 EADFKAMRFERDLLEYSLARLRQEKEKAETLKAGIVEQISDLPLSVNFVKAEETLIRASQ 712 Query: 949 KGPHWSAEVFNKLPGFIARLEKLKTDINNLND-----APIFLDIDDEVVSVKSL-YGDYD 1002 +W+ + + + L + + P+ LD+ D + + + +G Sbjct: 713 TNHYWAKQDSIETENALDELNTRLGPLMKFREQDTGPGPMNLDLTDTLHHKEWVEFGPQH 772 Query: 1003 TP---QDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWF--DRQHFEESSL 1057 + E ++L+ P L + N +T L E + H E L Sbjct: 773 EAVSISRYREMVEALIAELTEHNPVLLKIKNG-EAVTPDEANALAELLHTEHPHITEDLL 831 Query: 1058 RKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTR-IKGENDWSSEQLSWLDR 1116 R+A+K + A I IR + LK F E V A + I+ + SS QL +L+ Sbjct: 832 RQAYKNRK-----AHFIQFIRHILGIEILKTFPETVSEAFEQFIQQHSSLSSRQLEFLNL 886 Query: 1117 LAQALKEKVVLDDDVFKTGNF 1137 L + E+ ++ F Sbjct: 887 LKNFIIEREKVEKKDLINSPF 907 >UniRef50_B5FA21 Type I restriction-modification system, R subunit n=8 Tax=Bacteria RepID=B5FA21_VIBFM Length = 816 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 191/857 (22%), Positives = 325/857 (37%), Gaps = 151/857 (17%) Query: 241 SEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA-D 298 +E ++R LI+ L K GW K + I +G A D Sbjct: 5 NEADTRVDLIEPLLEKVGW----------KTVPSSFIRREVICPGKIQLGGKRARGVASD 54 Query: 299 YVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 YVL + +A VEAK + + ++ Y+K Sbjct: 55 YVLVYQGRKLAAVEAKSEKLSYTEGVRQAKDYAK-------------------------- 88 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 R F Y+TNG E I+ D K + + PEE Sbjct: 89 ------------RLNCRFGYATNGHE----------IYQIDTVTKE--EKLVERFLSPEE 124 Query: 419 LLEMLGSEPQK-----QNQWFADNPGMSELG---LRYYQEDAVRAVEKAIVKGQQEILLA 470 + + + + + F P ++ G RYYQE+A+ A A+ KG +ILL Sbjct: 125 MWALTFEKKETQYSQVWRERFTAVPMETQSGTWLPRYYQENAINAALDAVAKGAPKILLT 184 Query: 471 MATGTGKTRTAIAMMFRLIQSQR-------------FKRILFLVDRRSLGEQALGAFEDT 517 +ATGTGKT A + ++L S+ RILFL DR L QA F Sbjct: 185 LATGTGKTSIAFQIAWKLFNSKWSVKAQKKPELAKRRPRILFLADRNILANQAFNDFSPF 244 Query: 518 RINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV--KRTLQSDEPM----PVARYDCI 571 D I + + + + Q+ + K + +D P +D I Sbjct: 245 G--DDAIIRISPDEVRKNGGVPKNGSVFFTIFQTFMSGKDSEGNDAPYFGSYSPDFFDFI 302 Query: 572 VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPAL----HTV 626 ++DE HRG D+ S++R IL++F AV++ LTATP +T Sbjct: 303 IIDECHRGGAHDE----------------SSWRGILEYFSSAVQLGLTATPKRLDNANTY 346 Query: 627 QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDT 686 + FG+PVY Y ++ + DGFL P ++ T + ++ + G V+ Sbjct: 347 KYFGKPVYSYDLKSGINDGFL----TPFKVYT-------IVGTLDKYTYLPGDGVVVRGK 395 Query: 687 LEDDQDFEVADFN--RGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL 744 +E + +E DFN RG+ IPA + + ++P ++KT+VFC+T HA V + + Sbjct: 396 VEPGRVYEEKDFNHNRGISIPAREEKRVHYWMDRINP--NEKTIVFCMTQEHAGEVRDLI 453 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPS 804 +KK + ++IT D K + + N++ +P IV T L+TGVD + Sbjct: 454 NQYAQKKGGSDNLNYCVRITADDGKSGEADLELFSD-NEKTIPTIVTTSRKLSTGVDARN 512 Query: 805 ICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRP 864 + NIV +R I ++Q+ GR TRL + K F +FD V + D Sbjct: 513 VRNIVLMRPCTDMIEFKQIIGRGTRLYDK--KDFFSVFDFVQAHHNFSDPDWDGEPEDGA 570 Query: 865 KVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQV 924 + + +T+ + S + + + + + + V Sbjct: 571 TLNSDE--EVCSGPIPPDMTDEENESPSGNGAKGNGTDSGDTTNVPPPTPAPDKLV---V 625 Query: 925 RRLDELCQDAAGVNFNGFASRLREKGP---HWSAEVFNKLPGFIARLEKLKTDINNLNDA 981 + D + ++ + + K + +++ LP F ++L++ ++ Sbjct: 626 QLNDGRKRQIKHMHAALYWGSVDGKPITAHEFLQQLYGDLPRFFQNEDELRSLWSDPTTR 685 Query: 982 PIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAV--INRPRDLTRKG 1039 L DE+ + + Q+ LEA +L+ + + +P LTR Sbjct: 686 DKLL---DEL-------AENEYDQEKLEALKTLIDAPDSDVYDVLMYVAYEKPA-LTRAQ 734 Query: 1040 LVELQEWFDRQHFEESS 1056 L + F E Sbjct: 735 RAALAKASVDSEFTEHR 751 >UniRef50_UPI0001BC3736 type I restriction-modification system, R subunit n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC3736 Length = 917 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 197/976 (20%), Positives = 353/976 (36%), Gaps = 174/976 (17%) Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 L EE++R ID QL +GW S+ P + A GK+ DY Sbjct: 2 LPEEKARVKIDKQLMDSGWNIVSR-----DEYIPNLSLAVKEALMQGGKES-------DY 49 Query: 300 VLFVGLKPIAVVEAKRNNIDVP-ARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 +LFV K IAV+EAK+ + ++ Y+ Sbjct: 50 LLFVDNKAIAVIEAKKEEKSLGIDVAKQAENYA----------------------VTPKN 87 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 + +W D IP Y NG + + D+ L E H P++ Sbjct: 88 WYGTWFDNL------IPLVYLANGNKILFKNM---------LTDSDGDYIELTEMHSPKK 132 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 +L+++ + + + P + E GLR Q +A E +I KGQ++ L +ATG+GKT Sbjct: 133 MLQLIEMKSE-----YGALPRIEEKGLRNCQYEAEVNFENSIRKGQKKALAVLATGSGKT 187 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFE--DTRINGDTFNSIFDIKGLTDK 536 A +R + + +R+LFL DR +L QA F+ D N ++ I LT K Sbjct: 188 YLACLAAYRQLNYTQTRRVLFLADRNNLARQAETEFKLFDRTEKQQPLNDLYTINRLT-K 246 Query: 537 FPEDSTKIHVATVQSLVK--------------------RTLQSDEP---------MPVAR 567 + ++ I ++T+Q L + + DEP + Sbjct: 247 PDKINSDIVISTIQKLFAVLTGQKIDDIDEDEEDDKSFISDEKDEPEVKLGNNLKLSPDH 306 Query: 568 YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPALHTV 626 + I+VDE HR ++ +L +F DA + LTATP Sbjct: 307 FQFIIVDECHRSI-------------------YGKWQSVLKYFKDAKILGLTATPKPEAY 347 Query: 627 QIFGEPVYR-YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND 685 F + YTY +++DG + +I T + G + KG V + G+ ++ Sbjct: 348 AFFNNNIIEKYTYEDSIVDGVNVPNRV-YRIKTEQTEHGGAIEKGATVIETTRNGKKVDF 406 Query: 686 TLEDDQ-DFEVADFNRGLVIPAFNRAVCNELTN--YLDPTGSQ--------KTLVFCVTN 734 + + + D+ A +R +V P R E Y D + KTL+F + Sbjct: 407 YISNKRIDYTEAQLDRSIVSPEQIRLNLEEFKKSIYTDLFPERKVSWNYIPKTLIFAKDD 466 Query: 735 AHADMVVEELRAAFKKKYPQ--LEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVT 792 HA +V ++ F + + + + KIT A +I F + I VT Sbjct: 467 HHATEIVNIVKEVFAQNFDDSIIPEKFVQKIT----YSAGDTDALIREFRTNKEFRIAVT 522 Query: 793 VDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE----------VNKTSFKIF 842 V L+ TG D+ + + F+R V S +LY QMKGR R+ + K F I Sbjct: 523 VTLVATGTDVKPLEVVFFMRDVNSDVLYTQMKGRGCRVISDDKLREVTPNATTKDCFYIV 582 Query: 843 DCVDIYSTLESVDTM---RPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQL 899 D + + + + + +L+ L+ ++ D + + Sbjct: 583 DAIGVTEHDKQIPKAGNGKGGQKNKTPKLEQLLEYLSHGYVSD----DNLALLRDYCATI 638 Query: 900 VAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNF-NGFASRLREKGPHWSAEVF 958 + + + + + L +A N F S + G Sbjct: 639 NHRYEENALFGHHLKTFISNYNFSPKELAFNINEALSKNILPPFESVSSKNGARN----- 693 Query: 959 NKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRS 1018 N + I L K + +D++ ++ + F+E F+ + + Sbjct: 694 NLISCLITNLGARKKLLELHRGYYAVSPDEDKL--IEKGFSQEQALS-FIENFEKYITEN 750 Query: 1019 PNAQPALQAVINRPRD-LTRKGLVELQEWF--DRQHFEESSLRKAWK------------E 1063 ++ AL+ + N +T L+ELQE + + F + + +K Sbjct: 751 ADSIEALRIIYNSEDTVITHSMLLELQERLLSENRSFTPTKIWGNYKLLDTDSNVDELDI 810 Query: 1064 TRNEDIAARLIGHIRRAAVGDA-----LKPFEERVDHALTRIKGENDWSSEQLSWLDRLA 1118 ++N + LI +R A + LK + +R + + + ++ + +A Sbjct: 811 SQNTNALTNLIQIVRYAYKKNPKLISLLKGYSQRFTLYCGQ--AQRTLTEDKKDIMKHIA 868 Query: 1119 QALKEKVVLDDDVFKT 1134 + + + Sbjct: 869 DYIINDGYISINELNE 884 >UniRef50_D0KYE6 Type I site-specific deoxyribonuclease n=2 Tax=Proteobacteria RepID=D0KYE6_HALNC Length = 783 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 194/865 (22%), Positives = 306/865 (35%), Gaps = 143/865 (16%) Query: 240 LSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 ++E E+R ID L AGW + R E + E G + G AD Sbjct: 1 MNEAETRAEHIDPALAAAGWGVVA-----GSRIRREYPITLGRIE---GAGKRGKALTAD 52 Query: 299 YVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 YVL +AVVEAK N + + ++ YS Sbjct: 53 YVLEYRNTKLAVVEAKAWNKPLTEGVGQAKDYS--------------------------- 85 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 + I F Y+TNG GI+ D+ + L + P+E Sbjct: 86 -----------GKLAIRFAYATNG----------QGIYGIDMES--GVEAELANYPSPDE 122 Query: 419 LLEMLGSEPQKQNQWFADNPGMSE---LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 L + FA+ P RYYQ+ A+ V AI Q ILL +ATGT Sbjct: 123 LWARTFASQNIWRDRFAEVPFEDRGGYFQSRYYQDIAIERVLAAIADHQSRILLTLATGT 182 Query: 476 GKTRTAIAMMFRLIQSQR-------------FKRILFLVDRRSLGEQALGAFEDTRINGD 522 GKT A + ++L S+ RILFL DR L QA AF D Sbjct: 183 GKTFIAFQLAWKLFHSRWNLRDWQREAEPSRRPRILFLADRNILANQAFNAFSAF--PED 240 Query: 523 TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP------MPVARYDCIVVDEA 576 I + + Q+ + +P P +DCI++DE Sbjct: 241 ALVRIDPADIRKQGRVPKNGSLFFTIFQTFMSGQDAEGQPAPYFGDYPPDFFDCIIIDEC 300 Query: 577 HRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPAL----HTVQIFGE 631 HRG D+ S +R IL +F AV++ LTATP T Q FGE Sbjct: 301 HRGGANDE----------------SNWRGILAYFAPAVQLGLTATPKRKDNVDTYQYFGE 344 Query: 632 PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ 691 PV+ Y+ + + DGFL P ++ + + E V +P ++ +E + Sbjct: 345 PVFVYSLKDGINDGFL----TPFRVKQ------IATTLDEYV--YTPDDTLVEGEIEAGK 392 Query: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKK 751 +E ADFN+ + I + +D +KT+VFC T HA V + + Sbjct: 393 RYEEADFNKIIEIKEREQKRVEIFMAQIDQ--REKTIVFCATQEHALAVRDLINQIKSSS 450 Query: 752 YPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFL 811 P D ++T + N++ +P I+ T L+TGVD ++ NIV + Sbjct: 451 NP----DYCQRVTANDGARGEHYLRDFQD-NEKTIPTILTTSQKLSTGVDARNVRNIVLM 505 Query: 812 RKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTL 871 R V S I ++Q+ GR TRL K F I+D V + + + P+ Sbjct: 506 RPVNSMIEFKQIIGRGTRLYD--GKDYFTIYDFVKAHHHFNDPEWDGE-PLEPEPTDPRP 562 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELC 931 ++ S+ ++ + + D + Sbjct: 563 PQPPSEPTPPDGVREPSSSYERKPKVKVQLSDGKARTIQHMMSTSFWHPDGTPMSAQQFM 622 Query: 932 QDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEV 991 + G F E WS + L + + L + +D + Sbjct: 623 ESLFGRLPEFFKDE-DELRALWSDP--ETRKRLLEGLAEKGFGTDQLREMQKIIDAQNSD 679 Query: 992 VSVKSLY-GDYDTP---QDFLEAFDSLVQRSPN--AQPALQAVINRPRDLTRKGLVELQE 1045 + Y TP +D + +L+ N Q L V+++ + + L + + Sbjct: 680 LFDVLAYVAYAQTPLSREDRADRAMALISSHFNSKQQVFLDFVLSQYISVGVEELDKTKL 739 Query: 1046 WFDRQHFEESSLRKAWKETRNEDIA 1070 S LR + ++ N+ IA Sbjct: 740 G--------SLLRLKYHDSINDAIA 756 >UniRef50_Q47281 Type I restriction enzyme EcoEI R protein n=45 Tax=Bacteria RepID=T1RE_ECOLX Length = 813 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 178/771 (23%), Positives = 300/771 (38%), Gaps = 122/771 (15%) Query: 247 FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVG-L 305 I ++ AGW S+ R E + AD VL+ Sbjct: 17 KFILPAVKDAGWDVMSQ-------IRQEVKLRDGKIVVRGKLASRIKVKSADIVLYHKPN 69 Query: 306 KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQD 365 P+AV+EAK N + + + Y+ D Sbjct: 70 LPLAVIEAKANKHAISKGMQQGLDYASLLD------------------------------ 99 Query: 366 TSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMS--KALPEWHRPEELLEML 423 +PF +++NG G + D + + + AL ++ PE+L + Sbjct: 100 --------VPFVFASNG----------DGFIFHDKTNPQQLESEIALSDFPTPEQLWQKY 141 Query: 424 --------GSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 P +F D G RYYQ A+ A+ G+ ILL MATGT Sbjct: 142 CAWKGFTQEQLPVISQDYFDDGSGK---APRYYQMQAINRTVDAVSAGKNRILLVMATGT 198 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKT TA +++RL +++ KRILFL DR L +Q D + G+ + T Sbjct: 199 GKTYTAFQIIWRLWKAKNKKRILFLADRNILVDQTKRN--DFQPFGNAMTKV------TG 250 Query: 536 KFPEDSTKIHVATVQSLV--KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 + + + ++H+A Q++ + ++ + + +D IV+DE HRG + Sbjct: 251 RTIDPAYEVHLALYQAITGPEEHQKAYKQVAPDFFDLIVIDECHRGSASED--------- 301 Query: 594 RSQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQIFGEPVYRYTYRTAVIDGFLI 648 SA+R IL++F A ++ LTATP + + FGEPVY Y+ + + DGFL Sbjct: 302 -------SAWREILEYFGSATQVGLTATPKETEDVSNIDYFGEPVYTYSLKEGIEDGFLA 354 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 I + Q G KG+ + GE I D + + + DF+R LVI Sbjct: 355 PYKVVRVDIDVDVQ-GWRPVKGQ----LDKYGEEIEDRI-----YNLKDFDRTLVIDERT 404 Query: 709 RAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDA 767 V +T+YL T KT+VFC HAD + L + ++KITGD Sbjct: 405 MLVAQTITDYLKRTNPMDKTIVFCNDIDHADRMRHAL-VVLNPEQVLKNEKYVMKITGDD 463 Query: 768 DKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 D ++ I K+ P I T +L+TTGVD + +V + ++S ++Q+ GR Sbjct: 464 DIGKAQLDNFIN--PKKAYPVIATTSELMTTGVDAQTCKLVVLDQNIQSMTKFKQIIGRG 521 Query: 828 TRLCPEVNKTSFKIFDCVDIYSTLESVDTM----RPVVVRPK--VELQTLVNEITDSE-T 880 TR+ + K F I D + +VV+P + + NE D+E Sbjct: 522 TRINEKHGKLWFTILDFKKATELFADPRFDGLPEKVLVVKPGDISDKDSDFNEQLDAENN 581 Query: 881 YKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFN 940 + D E + V + ++ + D ++ V +D ++ Sbjct: 582 ADGGDNDASEAREDVADYQVNRDKQAGNGEFHDDDENKVRKFYVNGVDVKVLAKRVQYYD 641 Query: 941 GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEV 991 + E ++ + K + A L+ + + ++ +++ Sbjct: 642 SDGKLVTESFQDYTRKTMLKDSEY-ASLDSFVRKWQDAPRKQVIIEELEQL 691 >UniRef50_A1SRA3 Type III restriction enzyme, res subunit n=4 Tax=Bacteria RepID=A1SRA3_PSYIN Length = 860 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 163/697 (23%), Positives = 268/697 (38%), Gaps = 153/697 (21%) Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 +N +E E+R LI +L GW +++ R E G+ A G + + Sbjct: 1 MNRNESETRADLISPKLALDGWGTTERSI-----IRREFGIT---AGRILGGGKRASSLS 52 Query: 297 ADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 +DYVL + +A VEAKR ++ + ++ Y+ Sbjct: 53 SDYVLEFQGRKLAAVEAKRESLSYTEGVRQAKDYA------------------------- 87 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 QR + F Y+TNG + I+ D+ + + + P Sbjct: 88 -------------QRLQCRFAYATNGHD----------IYQIDML--TGFEQLVDNYLSP 122 Query: 417 EELLEML------GSEPQKQNQW---FADNP--GMSELGLRYYQEDAVRAVEKAIVKGQQ 465 ++ + +EP W FA P + RYYQE+A+ +AI G+ Sbjct: 123 ADMWRLCFEPVTGKTEPDYTATWRTRFAQIPFEFKGDWQPRYYQENAINQALEAIALGKD 182 Query: 466 EILLAMATGTGKTRTAIAMMFRLIQSQR-------------FKRILFLVDRRSLGEQALG 512 ILLA+ATGTGKT A ++L S+ RILFL DR L +QA Sbjct: 183 RILLALATGTGKTCIAFQTAWKLFHSRWSLQAAKNPSNAKKRPRILFLADRNILTKQAFN 242 Query: 513 AFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQ-------------- 558 F D I + K + I +A Q+L+ + Sbjct: 243 DFGAFG--EDAVVRITPSEIKKAKGVPKNASIFMAIFQTLMTDSASNPTNDSDEEELPED 300 Query: 559 --------------SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYR 604 + P +D I++DE HRG D+ S++R Sbjct: 301 EDYSLPIVTDTSNCNFRQYPEDFFDFIIIDECHRGGANDE----------------SSWR 344 Query: 605 RILDHF-DAVKIALTATPALHT----VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITR 659 IL++F AV++ LTATP + FGEPVY YT + + DGFL P ++ Sbjct: 345 DILNYFAPAVQLGLTATPKRTDNVDSYKYFGEPVYSYTLKEGINDGFL----TPFKVYP- 399 Query: 660 NAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL 719 + ++ + E + ++ DFNR + +P + + +++ Sbjct: 400 ------IVGTMDEYQYTPGDAVTFKGEPEAGRVYKEGDFNRIITMPQREQKRVHYWMDHI 453 Query: 720 DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMIT 779 +P KT+VFC T HA MV + + +K ++IT + Sbjct: 454 NPHD--KTIVFCGTQEHAGMVRDYINQYAVQKGWTTNPTYCVRITANDGAAGENDLRTFC 511 Query: 780 RFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSF 839 N++ +P I+ T L+TGVD ++ NIV +R + I ++Q+ GR TRL K+ F Sbjct: 512 D-NEKTIPTILTTSRKLSTGVDARNVRNIVLMRPCNNMIEFKQIIGRGTRLYD--GKSFF 568 Query: 840 KIFDCVDIYSTLESVDTMR---PVVVRPKVELQTLVN 873 ++D V + + P +P + + N Sbjct: 569 TVYDFVKAHHNFADPEWDGEPLPPKEKPDEQPCDICN 605 >UniRef50_A3CUH7 Type III restriction enzyme, res subunit n=3 Tax=Methanomicrobia RepID=A3CUH7_METMJ Length = 945 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 202/1013 (19%), Positives = 369/1013 (36%), Gaps = 209/1013 (20%) Query: 238 LNLSEEESRF-LIDAQLRKAGWQA-DSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG 295 ++L+E ++R ID L + GW + ++ + + ++ Sbjct: 1 MDLTELQTRKSKIDVYLAEQGWDVMNRASVIPEVDTKQSDFLARSYKTVSETLKNDLESK 60 Query: 296 FADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 + DY+L P+A++EAKR + D ++ +Y+ R+ Sbjct: 61 YVDYLLLDSLGAPLAIIEAKRTSKDPLIGQKQAEQYADDIKRQTGRDV------------ 108 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 F + +NG E IW+ D R + L ++ Sbjct: 109 ---------------------FIFLSNGYE----------IWFWD--RERYPLRLLKGFY 135 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 ++L + ++ + + R + V+ V + I KG ++ L+ MATG Sbjct: 136 AQKDLERL--RFQIQKIDPTRSIEINTRIVDRSKSIENVKRVLEHIRKGHRKGLIVMATG 193 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALG----AFEDTRINGDTFNSIFDI 530 TGKTR A+A++ L+Q R +++LFL DR++L +QA F + I++ Sbjct: 194 TGKTRVAMAIIDALLQENRAQKVLFLADRKALRDQAWNKGFLEFFPHEAKDKILHGIYNK 253 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP----MPVARYDCIVVDEAHRGYILDKEQ 586 + +++V+T+Q+ + Q D + +D I DEAHR Sbjct: 254 EK----------RLYVSTIQTFQEIYTQKDRHGQNLISPGEFDLIFSDEAHRSI------ 297 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTY 638 + +R + + DA++I LTATPA T + F P Y+Y Sbjct: 298 -------------YNKWRDVFTYLDAMQIGLTATPAELVDRDTFRFFHCNDNMPTALYSY 344 Query: 639 RTAVIDGFLID-QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVAD 697 AV DG L+D + I T EG++ S + ER + + +FE + Sbjct: 345 DEAVKDGVLVDFRKSIIGAQTHFQIEGLHPSDLTESER---NRLIEQGIDPYEINFEGTE 401 Query: 698 FNRGLVIPAFNRAVCNELTN--YLDPTG--SQKTLVFCVTNAHADMVVEELRAAFKKKYP 753 + + + + A+ E +D G K++ F ++ HA L AF YP Sbjct: 402 LEKKVAVKGTSEAIVREFMEGCQMDQAGTLPAKSIFFAISKKHA----RRLHEAFDDLYP 457 Query: 754 QLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 + + I D + + +I F E P + ++VD+L TG+D+P +CN+VF + Sbjct: 458 EYKGRLARIIVSDDPR----AEALIHDFEHESFPRVAISVDMLDTGIDVPEVCNLVFAKP 513 Query: 814 VRSRILYEQMKGRATR---------LCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVV-- 862 V S+I + QM GR TR P+ +K FK+FD + + M P V Sbjct: 514 VFSKIKFWQMLGRGTRSDGACKHREWLPDGHKEYFKVFDFWNNFEYWN----MNPEGVKN 569 Query: 863 RPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDK 922 P + + + + + ++ E A ++L ++ + + R+ I Sbjct: 570 EPTEAITSRIFFLRLKQLERLLEQGDDERAAIVRQRLEEDIRSLPMDSVTVREHEREI-- 627 Query: 923 QVRRLDELCQDAAGVNFNGFAS-------------RLREKGPHWSAEV--FNKLPGFIAR 967 + L D G++ L+E AE L G Sbjct: 628 -AKALSPKLWDNVGLDPLENLKTTIMPLMRFQTGVNLKEASFTVKAERLGLAVLEGNEKE 686 Query: 968 LEKLKTDINNLNDA--------PIFLDIDDEVVSVKSLYG-------------------- 999 +E+L +I + D + DEV++ G Sbjct: 687 IERLAPEIGEMVDHLPRTLNIVKEKEERLDEVLTHAFWKGLSFEDAIGLVEEIAPLMKYM 746 Query: 1000 --DYDTP------------------QD---FLEAFDSLVQRSPNAQPALQAVIN---RPR 1033 + P +D ++ AF V++ VI R Sbjct: 747 SKEAHEPIVIDMGDIIEQRTLWTLKEDAPEYVVAFREKVEKRVTELADHNPVIQKILRDD 806 Query: 1034 DLTRKGLVELQEWFDRQH--FEESSLRKAWKETRNEDIAARLIGHIRR-AAVGDALKPFE 1090 +T L +L+E E L+ + + L+ IR + +A P + Sbjct: 807 PITEADLHDLEEALAEAGVNVTEEMLQISPRHPY-----GSLVEFIRSLFGLYEAPDP-K 860 Query: 1091 ERVDHALTR--IKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRG 1141 E++ A I+ ++++QL ++ + K ++ D F G Sbjct: 861 EKIAEAFQTYMIESNKHYTADQLHFIRTIQTVFMRKRRIEMDDLFLAPFTNFG 913 >UniRef50_C2CJE8 Type I site-specific deoxyribonuclease n=5 Tax=Firmicutes RepID=C2CJE8_9FIRM Length = 781 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 181/808 (22%), Positives = 297/808 (36%), Gaps = 124/808 (15%) Query: 258 WQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLK-PIAVVEAKRN 316 W D ++ E + ADYVL++ PIA+VEAK N Sbjct: 28 WNKDKISM--------ERKITDGKINIRGNLKFREKAKRADYVLYLNNNNPIAIVEAKDN 79 Query: 317 NIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPF 376 + L ++ Y++ D +PF Sbjct: 80 KKSLSHGLQQAMTYARMLD--------------------------------------LPF 101 Query: 377 CYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQK------Q 430 YS+NG G D + +L E+ EEL+ SE K + Sbjct: 102 AYSSNG----------DGFMEHDFLTGKERELSLEEFPSEEELINRFKSEKNKGRGLSEE 151 Query: 431 NQWFADNPGM---SELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFR 487 + + P + RYYQ A+ + + I KG+ +LL MATGTGKT TA +++R Sbjct: 152 EEKIINQPYYSSQNTYPPRYYQRIAINRILEEIAKGKDRLLLVMATGTGKTYTAFQIVYR 211 Query: 488 LIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVA 547 L+QS + K+IL+L R L +Q + D + + K D S +++ + Sbjct: 212 LLQSGQKKKILYLAYRNILVDQTISG--DFAPLKKVIHKVNFSKD--DPTTITSHQVYFS 267 Query: 548 TVQSLVKRTLQS--DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRR 605 Q L+ + E +D I+VDE HRG + S++RR Sbjct: 268 LYQQLIGEDGKEHFSELFRPDFFDLIIVDECHRGSAKED----------------SSWRR 311 Query: 606 ILDHF-DAVKIALTATPA----LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 IL++F A +I +TATP + FGEP+Y Y+ R + DGFL P ++I N Sbjct: 312 ILEYFKSASQIGMTATPKETKYVSNSHYFGEPIYSYSLREGIEDGFL----APFKVI--N 365 Query: 661 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD 720 + S ++ G+ I D + + +D++ +VI V E+T YL Sbjct: 366 ITTDIGESWRPYKGQLDKSGKEIEDRI-----YNNSDYDYNIVIEDRTYQVAKEITAYLK 420 Query: 721 PTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMIT 779 T KT+VF T A+ + L + D ++ITG + K+ I+ Sbjct: 421 ATDRMAKTIVFTPTEEAAERMRVALVN-LNNDLVKENPDYCVRITGSDEYGKSKLDYFIS 479 Query: 780 RFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSF 839 + P I T LL+TGVD + IV + S ++Q+ GR TRL + KT F Sbjct: 480 I--SSQYPVIATTSKLLSTGVDTKMVKLIVLDTMLNSMTEFKQIIGRGTRLREKEGKTHF 537 Query: 840 KIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEIT--DSETYKITEADGRSFAEHSHE 897 + D ++ D P+++ + ++ ETY RS Sbjct: 538 VLMDFRNVSRLFADPDWDGPLIIDDGFNPKKPNDKEAHEPPETYTTGGGINRSVPIIDKN 597 Query: 898 QLVAKL-----------QRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRL 946 L K+ +++ + E I + LD+ + + R Sbjct: 598 GLKVKIINKTVSIYDTNSKLLRCESIIDYTKENIRGEYANLDDFIRT-WRRDSKENIVRK 656 Query: 947 REKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDT-PQ 1005 + E K + + + E V + Y+ + Sbjct: 657 MLEEVGIDIEELKKEQDMEDVDDFDFILHIAYDKKALTRKERAENVKKHDFFSKYNGLAR 716 Query: 1006 DFLEA-FDSLVQRSPNAQPALQAVINRP 1032 D LEA D + + ++ + P Sbjct: 717 DILEALLDKYMNQGIEEITSMDVLKLDP 744 >UniRef50_C7P6A6 Type I site-specific deoxyribonuclease n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P6A6_METFA Length = 816 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 218/950 (22%), Positives = 385/950 (40%), Gaps = 161/950 (16%) Query: 238 LNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGAR--PEPGVNKAIAEWPTGKDETGNQ 294 + LSE ++R + +L++ GW ++ + + G + I + P Sbjct: 1 MPLSEADTREKFVIPKLKEYGWTEENIIREYKIKSDRFYVKGEDYEIIKSP--------N 52 Query: 295 GFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 FAD VL V + VVE KR +I L ++ Y+K D Sbjct: 53 KFADIVLKVNNIIVGVVEVKREDIPADKGLPQAIDYAKRLD------------------- 93 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 +P Y+TNG+E I+ R + T + + Sbjct: 94 -------------------VPIAYTTNGKEI--------IIYDRRIPKTER----VDNFL 122 Query: 415 RPEELLEMLGSEP--QKQNQWFADNPGMSE--LGLRYYQEDAVRAVEKAIVKGQQEILLA 470 P+EL ++ + +N + P ++ LR YQE A++ V +A++KGQ+ ILL Sbjct: 123 SPKELYQIYKEWKGLEDKNLSPLEYPYYNDPTKKLRSYQETAIKRVIEAMLKGQKRILLT 182 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDI 530 MATGTGKT T+ ++++LI+S R+LFL DR L +QA A+E + G F Sbjct: 183 MATGTGKTFTSFQIVWKLIKSGFISRVLFLTDRIFLRDQAYEAYEPFK--GARF------ 234 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 + + +I+ +T Q+L +P +D I++DE HR Sbjct: 235 -KIESGKFNKNRQIYFSTYQTLYTDNFYK--QIPEDFFDLIIIDECHRS----------- 280 Query: 591 LQFRSQLDYVSAYRRILDHF-DAVKIALTATPALHT----VQIFGEPVYRYTYRTAVIDG 645 + I++HF DA + +TATP + FGEPV+ Y+ A+ DG Sbjct: 281 --------RYGRWGEIVEHFKDAYHLGMTATPRREDNIDVYEYFGEPVFEYSLAQAIEDG 332 Query: 646 FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIP 705 +L+ +I+T EG+ +S Q E I E+ + L+D + ++F R + +P Sbjct: 333 YLVPYKI-YKILTNIDIEGLDIS---QAEEIIYDDEINPENLKDF--YLPSEFERTISLP 386 Query: 706 AFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT 764 R +C +L N ++ T + KT++FCV HA++V + + + +KI Sbjct: 387 DRTRKMCEKLLNIMNKTDKKAKTIIFCVDTEHAEIVKNTINQLTNNE------NFAVKIV 440 Query: 765 GDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMK 824 + D I R ++ P + TVDLL+TGVDIP + NIVF+R + SR+L++Q+ Sbjct: 441 HEDKNDLE-----IFRDSESNYPIVATTVDLLSTGVDIPDVKNIVFMRPISSRVLFKQII 495 Query: 825 GRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKIT 884 GR +RL NK F+I D + ++ D +P PK++++ + E ++ K Sbjct: 496 GRGSRLAN--NKGFFRIIDFTNATRLIDEWDIPKP----PKLKVEEIPEE-PYNKIIKGY 548 Query: 885 EADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFAS 944 D + ++ K+ R N+ +++ L ++ +G+ Sbjct: 549 VIDKDTKEPIFDARVKIKIGRFEKETYTNKYGYF----ELKELPSNPLLNIIISKDGYVP 604 Query: 945 RLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTP 1004 R+ P+ F P + I I ++++ G + Sbjct: 605 LRRKVAPNEENYFFELKPIKKKPKKITVRGIVVEIAEEIEVEVN----------GTNVSY 654 Query: 1005 QDFLEAFDSLVQRSPNAQPALQAVI--NRPRDLTRKGLVELQEWFDRQHFEESSLRKAWK 1062 ++ + + + L+ V ++ R L E D E Sbjct: 655 AEYKRYVKENIVKEIHTLEDLKDVWINDKKRKEFLDKLKEKCIDIDLIRDLED-----MD 709 Query: 1063 ETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRI-----KGENDWSSEQLSWLDRL 1117 E DI A L+ + L +RV++ + + K D LS L++ Sbjct: 710 EVDGFDIMAHLVFDV-------PLLTRNDRVNYFINKHLYKIDKYGRDIRDIVLSMLEKY 762 Query: 1118 AQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWD 1167 + + L V T + R+G L+ N+ + + I++ Sbjct: 763 KRGGIDN--LSPKVLLTQDMKRKGALNKLKAKVK-NIPQFINEIKSNIYE 809 >UniRef50_C9MRT3 Type I restriction-modification system, R subunit n=5 Tax=Bacteroidales RepID=C9MRT3_9BACT Length = 770 Score = 366 bits (939), Expect = 3e-99, Method: Composition-based stats. Identities = 171/806 (21%), Positives = 301/806 (37%), Gaps = 122/806 (15%) Query: 239 NLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 +L+EE+ + I + KAGW+ + + + + I + +TG + A Sbjct: 11 DLTEEDIKLRFITPAINKAGWKNEHIRMEYYFTD------GRVIFQGKVHARQTGKK--A 62 Query: 298 DYVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DY+LF KPIA++EAK NN + + ++ Y++ D Sbjct: 63 DYLLFHAANKPIAIIEAKDNNKPLGGGMQQAMEYAQILD--------------------- 101 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 IPF YS+NG G D + +L ++ P Sbjct: 102 -----------------IPFAYSSNG----------DGFLEHDFLTGKETELSLEQFPTP 134 Query: 417 EELLEMLGSEPQKQNQ--WFADNPGMSE---LGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 + L + + + Q N+ + P S+ RYYQ AV +AI KG+ +L+ M Sbjct: 135 DALYQRIINAKQLNNEALKIIEQPFYSDSYTYEPRYYQRIAVERTVEAIAKGRDRVLIVM 194 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIK 531 ATGTGKT TA ++ RL S K+IL+L DR L +Q + +D + I Sbjct: 195 ATGTGKTITAFQIIHRLKASGTKKKILYLADRNILIDQTMV--QDFKPFKKVMTKI---- 248 Query: 532 GLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM---PVARYDCIVVDEAHRGYILDKEQTE 588 + + ++H+A LV ++P +D I+VDE HRG D Sbjct: 249 --QGATIDSAYEVHMALYHQLVSNEEGVEDPFKQVQPTFFDLIIVDECHRGSAKDD---- 302 Query: 589 GELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA----LHTVQIFGEPVYRYTYRTAVI 643 SA+R++L++F A +I +TATP + + FGEPV+ Y+ + Sbjct: 303 ------------SAWRKVLEYFSTATQIGMTATPKAENGANNLDYFGEPVFTYSLLQGIQ 350 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV 703 DGFL I+ + Q + S + + + +E D R + Sbjct: 351 DGFLAPYRVTNSYISIDLQGF----------KPSDDEKDLLGRDIVQRLYERKDIGRDIA 400 Query: 704 IPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 V +T L G KT+VFC A+ + L + +++ Sbjct: 401 FTKRREIVAKRITKMLKQIGRMTKTIVFCTDIDEAEAM-RSLLVNLNTDLCNRDPRYVMR 459 Query: 763 ITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 ITGD + +++ I + P IV T +LL TGVD + IV +++ S ++Q Sbjct: 460 ITGDDNVGKKQLDNFIDV--DQAYPTIVTTSELLATGVDCKTCGLIVIDKEIGSMTEFKQ 517 Query: 823 MKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYK 882 + GR TRL + K +I D + + + P + I D Sbjct: 518 IIGRGTRLRTDKGKWHLEILDFRNATAKFKDPKFDG--DPEPPQGKGPKIYTIPDKSPTI 575 Query: 883 ITEADG-RSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNG 941 ++E + E H + ++ ++G D +++ N Sbjct: 576 VSEPQRVKYLVEGEHIAITTEIVSVLGEDGRTMRTESVTDYTRKQIR-----KRYATLND 630 Query: 942 FASRLREKGPHWS-AEVFNKLPGFIARLEKLKTDINNLNDAPIFLDID-DEVVSVKSLYG 999 F E + + + + + + + + + D+ + Sbjct: 631 FVKNWTEAERKKVIVDELKDYSVLVDAVREKNPALAHADIFDVICHVAYDQPPMARRERA 690 Query: 1000 DYDTPQDFLEAFDSLVQRSPNAQPAL 1025 + +++ F ++ AL Sbjct: 691 NNVKKRNY---FAKYEGKAREVLEAL 713 >UniRef50_A4FZ35 Type III restriction enzyme, res subunit n=1 Tax=Methanococcus maripaludis C5 RepID=A4FZ35_METM5 Length = 912 Score = 365 bits (937), Expect = 5e-99, Method: Composition-based stats. Identities = 205/997 (20%), Positives = 373/997 (37%), Gaps = 167/997 (16%) Query: 240 LSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 L+E+++R LID +L++ GW K ++ + NK G E+G+ + D Sbjct: 9 LNEKQTRKRLIDTELKRVGWL--EKYIKEEVNSVKSDFKNKNYI-LDNGIYESGDH-YID 64 Query: 299 YVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 Y+L PIA++EAKR + D ++ Y+K ++ Sbjct: 65 YLLLGEDNSPIAIIEAKRYSKDPQDGRIQARTYAKDIESQTG------------------ 106 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 +P + TNG + ++ D + + + + + Sbjct: 107 --------------VNVP-IFLTNG-------------YVWELIDEKGIERKVSRPFSQK 138 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 ++ +++ D S + R V+ + + +G ++ L+ MATGTGK Sbjct: 139 DIERRADLFKNEKSPK--DLEINSYIVDRPRSVQIVKRLSEHFSEGHKKALIEMATGTGK 196 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TR A+A+ LI+S + ILF+ DR L +QAL + + + L Sbjct: 197 TRVAMAVCDILIRSNYARNILFIADRTVLVDQALNKGFKKYFIDEAVADLRNGYNL---- 252 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 ++++V+TVQ+L E +D ++ DEAHR Y Sbjct: 253 ---DSRLYVSTVQTLKNGDDPLFEKYSPGFFDLVIFDEAHRSYYDKNNV----------- 298 Query: 598 DYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFLID 649 I+++FDA++I LTATP +T +F G P Y+Y AV DG L+ Sbjct: 299 --------IMNYFDAIQIGLTATPKDEVSHNTYDLFGCDKGVPTAEYSYDEAVQDGVLVP 350 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 I I T G+ +G ++ + D +F ++F R + N Sbjct: 351 YIGKI-IETEVLSLGI---EGIKLSDDLKDQLRRQEQDPDLTEFSGSEFERIFLDDKTNE 406 Query: 710 AVCNELTNYL---DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD 766 + ++ Y D + KT+ FC+ HA + + F K YP +D + ++ Sbjct: 407 LIIHQFMKYCYRSDDSKPAKTIFFCMGKEHAKKI----KKLFSKLYPSYSNDVQVILS-- 460 Query: 767 ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 D ++ Q + RF E P IV++V ++ TGVD+P + N+VF++ V S+ + QM GR Sbjct: 461 ---DMQRYQDEVKRFEHESEPRIVISVGIMDTGVDVPEVSNLVFVKPVFSKTRFWQMVGR 517 Query: 827 ATR---------LCPEVNKTSFKIFDC-VDIYSTLESVDTMRPVVVRPKVE--------- 867 TR PE +K F I D V +S + + +PK + Sbjct: 518 GTRNFKACDHPEWLPEGDKKDFLILDFKVGGHSNILYHEFTPTTEGKPKKDTVSKIFENR 577 Query: 868 LQTLVNEITDSETYKITEADGRSFAEHSHEQLVAK----LQRIIGLATFNRDRSETIDKQ 923 ++ L N + ITE S + +E + + + R I FN ++ + + Sbjct: 578 VELLSNGLFGENKEIITEKVIESIEKLDNESFIVRERLPIIREIHENKFNIEKYISELRN 637 Query: 924 VRRLDELCQDAAGVNFNGFASRLREKGP---HWSAEVFNKLPGFIARLEKLKTDINNLND 980 + + F + P + K+ FI + +NL D Sbjct: 638 DILPLMITTQGENPKISSFVLISEKLYPYILENKLDNIEKIKKFIIYRAENILLKDNLED 697 Query: 981 API----FLDIDDEVVSVKSLYGDYDTPQDFLEAFDSL---VQRSPNAQPALQAVINRPR 1033 + + I E + D+ L ++ +P A +++ Sbjct: 698 VKVNRESIISIMQENFWDDLTFSKVDSMIKTLAPLMKYYTKIKGNPIQIDAPDVILSV-- 755 Query: 1034 DLTRKGLV---ELQEWFDRQHFE-----------------ESSLRKAWKETRNEDIA--- 1070 + K + EL+E+ + E+ L K E I Sbjct: 756 ENYTKQISENTELKEFLENNEIARKIYQGIGISSVELLKLEAELVKLKPEISINSIQNIY 815 Query: 1071 -ARLIGHIRRAAVGDALKPFEERVDHALTR-IKGENDWSSEQLSWLDRLAQALKEKVVLD 1128 + IR E ++ I ++S+Q+ +L+ L + ++ ++ Sbjct: 816 KKDFLVFIREMLKMKLDNNPRELIELRFDEFIINSRQYNSKQIEFLNLLKKVFSDRKHIE 875 Query: 1129 DDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 F F L R D L++++ K ++ I Sbjct: 876 LSDFSKAPFKDE---NPLDRFEFDELESIVNKCNNNI 909 >UniRef50_Q4HNM6 Type I restriction-modification system, R subunit n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HNM6_CAMUP Length = 813 Score = 364 bits (933), Expect = 1e-98, Method: Composition-based stats. Identities = 177/782 (22%), Positives = 300/782 (38%), Gaps = 144/782 (18%) Query: 234 IKRTLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETG 292 +K NLSEE+++ I+ L K GW +S + + A+ + ++ + TGK + Sbjct: 1 MKALQNLSEEDTKKRYIEPALSKVGWDFESIKMEYGVKAK-DYEFSEGKIDIKTGKRDKS 59 Query: 293 NQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEV 352 ADYVLF +AV+EAK + + ++ Y+K Sbjct: 60 TIKKADYVLFYNGIALAVLEAKAYKYEDSEGIEQAKNYAKAL------------------ 101 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 K PF +S++G+ + TK D + + L Sbjct: 102 --------------------KAPFAFSSSGKGFVKYTLTK------DFKGVAKENLPLNA 135 Query: 413 WHRPEELLEMLGSEPQKQNQ-WFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 + P EL E N + +S+ RYYQ +A+ A A KGQ ILL + Sbjct: 136 FPSPGELYEAYKKWQNLTNDNLLQTHCDLSQTTPRYYQNNAINAALIATQKGQSRILLVL 195 Query: 472 ATGTGKTRTAIAMMFRLI-----QSQRFKRILFLVDRRSLG-EQALGAFEDTRINGDTFN 525 ATGTGKT A + RL ++ ++IL+L DR L F+ Sbjct: 196 ATGTGKTLIAYQIAHRLFNQTLPNGKKIEKILYLADRNELINTDTTRTFKSF-------- 247 Query: 526 SIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP------MPVARYDCIVVDEAHRG 579 I + ++ + ++ Q + + ++++ + +D I +DE HRG Sbjct: 248 -AKGIYKIENRNFKSGYSLYFGIYQQFISGSEENNDKKEHYKALKPDFFDLIFIDECHRG 306 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALH-------------- 624 S +R IL++F+ A++I +TATP + Sbjct: 307 SARAD----------------STWREILEYFNSALQIGMTATPKYNKEQRESQEAGELEK 350 Query: 625 ----TVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG 680 + FGEPVY+Y+ + + DG+L P +I + + E +R Sbjct: 351 RDDDNIDYFGEPVYQYSLKQGIDDGYL----APFSVIENLSNIEMQGYTPELGKRDEEGR 406 Query: 681 EVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS---QKTLVFCVTNAHA 737 E+ +T F DFNR + + R V +++ +L T KT++FC HA Sbjct: 407 EIPQET------FNSPDFNRTIYLKPQIRFVAKKVSKFLHHTLKNPYAKTIIFCEDQRHA 460 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFN--KERLPNIVVTVDL 795 ++ + L+ K+ + + I +IT D DK + ++ F +R P I T L Sbjct: 461 LLMKDALQDE-NKQEVAKDSNYITRITSDDDKG----KALLDNFKSVSKRYPVIATTSQL 515 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL---CPEVNKTSFKIFDCVDIY-STL 851 L+TGVD + IV + VR + L++QM GR TRL KT F + D I L Sbjct: 516 LSTGVDTQMVQVIVIDKIVRDKSLFKQMIGRGTRLNEVLESKGKTHFYVLDFKGIAREFL 575 Query: 852 ESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLAT 911 D V E++ E T K + + + + Sbjct: 576 NDPDFDGEVEFIGTDEVRE--REKKPESTDKENKTESNDLPPDIKDPPI----------- 622 Query: 912 FNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKL 971 + ++++ + A N NG + + + +S E F + L+ L Sbjct: 623 ----KYTIGGEEIQVYTQSKSVAILRNVNGVLTPITQSLESFSGEKLKNTKAFESYLKTL 678 Query: 972 KT 973 + Sbjct: 679 RI 680 >UniRef50_A0Q726 Type I restriction-modification system, subunit R (Restriction) n=25 Tax=Proteobacteria RepID=A0Q726_FRATN Length = 782 Score = 360 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 163/791 (20%), Positives = 288/791 (36%), Gaps = 142/791 (17%) Query: 238 LNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 ++ SE +++ LI +L+ +GW + T + G +A G + F Sbjct: 1 MSYSEADTKAKLITPKLKNSGWDERNITREYY----FTDGRKQA-------GGARGEKKF 49 Query: 297 ADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DY+L +A+VEAK+ I+ L ++ Y+K + Sbjct: 50 VDYLLHYQGINLAIVEAKKEGINYKQGLQQAIDYAKALN--------------------- 88 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 + + YSTNG + + S+ + ++ P Sbjct: 89 -----------------VDYVYSTNGHNIL------------EYHISTGQSQDIDDFPTP 119 Query: 417 EELLEMLGSEPQKQNQWFADNPGMSE--LGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 EL E K Q S+ RYYQ+ AV+ AI GQ ILL +ATG Sbjct: 120 RELFERKYPNINKVRQNVVTQEFFSDGTKTPRYYQKIAVQKTIDAISSGQDRILLTLATG 179 Query: 475 TGKTRTAIAMMFRLIQSQRFK--------RILFLVDRRSLGEQALGAFEDTRINGDTFNS 526 TGKT A + +RL++++ K RIL+L DR L +QA+ F I D Sbjct: 180 TGKTYIAFQIAYRLLEARWRKNDIGNKKPRILYLADRNILIDQAINEF--NPIENDCKRI 237 Query: 527 IFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS--------------DEPMPVARYDCIV 572 + S + A Q++ + + + P +D I+ Sbjct: 238 QGKLIKKNGGKVPLSGNVFFAIYQAVAENKNRQYLATDSEDDSLTAYYKQYPADFFDLII 297 Query: 573 VDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPAL----HTVQ 627 +DE HRG D S++R I+++F AV + LTATP T Sbjct: 298 IDECHRGSANDD----------------SSWRDIIEYFSSAVHLGLTATPKRDVNGDTYD 341 Query: 628 IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTL 687 FGEP+Y Y+ + + DGFL P ++ ++ P D Sbjct: 342 YFGEPIYEYSLKDGINDGFL----TPYKVKRIT----------TNIDEYRPNTHDSVDGD 387 Query: 688 EDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAA 747 ++ + ++D+ + + + + + + ++ KT+VFC HA EL+ A Sbjct: 388 LPNKVYSISDWEKTITSQQRHELIAKTILDNINKMD--KTIVFCKNQPHA----LELKLA 441 Query: 748 FKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICN 807 + D +++T + + R N + +P I+ + +LTTGVD ++ N Sbjct: 442 IDRFKKVKTPDYCVRVTSEEGQIGRDYLEQFQD-NDKDIPVILTSSKMLTTGVDAKNVRN 500 Query: 808 IVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVE 867 IV + S I ++Q+ GR TR K F I D V D V V+ Sbjct: 501 IVLTAPIESMIEFKQIIGRGTRTFE--GKDFFTILDFVKASDKFYDKDWDGVADVVTDVK 558 Query: 868 LQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRL 927 + +T +I E D + ++ I + + + I+ + Sbjct: 559 A----DGKPKEDTKEIKEIDPIENLKEKDDEPKKHEPINITIKG-RKLKVLDIETSYVGV 613 Query: 928 D--ELCQDAAGVNFNGFASRLREKGPHWSAEVF---NKLPGFIARLEKLKTDINNLNDAP 982 D + G + + + + + +LE++ + N+++ Sbjct: 614 DGRPIATQEYLEQLIGVLGKYCQNNEQALKDAWANPKHRQTLLDKLEEMLSFGQNIDNIK 673 Query: 983 IFLDIDDEVVS 993 D + Sbjct: 674 AIFKAKDSDIY 684 >UniRef50_A8ZY57 Type III restriction protein res subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZY57_DESOH Length = 787 Score = 355 bits (911), Expect = 5e-96, Method: Composition-based stats. Identities = 181/737 (24%), Positives = 281/737 (38%), Gaps = 145/737 (19%) Query: 238 LNLSEEES-RFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 ++ +E+++ LI+ L KAGWQ DS+ G+ + T DET Sbjct: 1 MSRNEKQTCTDLIEPALTKAGWQWDSQV---------TIGLGRVNITGDTMYDETQTI-I 50 Query: 297 ADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 ADYVL P+ V+EAK +I + + RY+ Sbjct: 51 ADYVLRYYGAPLVVLEAKAESISAADGMQQGSRYA------------------------- 85 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 R I F +TNG ++ T + + L P Sbjct: 86 -------------GRLDIRFSIATNGTDWVLT------------DNDSGKYETLSAPPSP 120 Query: 417 EELLEMLGSEPQ--KQNQWFADNPGMSEL---GLRYYQEDAVRAVEKAIVKGQQEILLAM 471 E +L G + + F+ + ++ +R YQ+ A+ G LL M Sbjct: 121 EAILTHHGISIDWDQWGEVFSAGYHIDQVSRKVVRPYQDVAIHKTLWHFAGGNNRALLLM 180 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKR--ILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 ATGTGKT ++++L+ + KR ILFL DR SL +QA AF T + Sbjct: 181 ATGTGKTFVVFQLVWKLLNTSILKRQHILFLTDRNSLKDQAYRAFAAF----STDERVTI 236 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQS--DEPMPVARYDCIVVDEAHRGYILDKEQT 587 K K+ A Q+L + E +D +++DE HR D Sbjct: 237 NKDTVANGQHQVGKVFFANYQNLDEELDGKKIFEHYDQDFFDLVIIDECHRSGFGD---- 292 Query: 588 EGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA---------------LHTVQIFGE 631 + +L+HF+ A+++ LTATP T + FG Sbjct: 293 ---------------WFGVLEHFNSALQMGLTATPRELEEGRRVLTEEEKRRDTYEYFGA 337 Query: 632 PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ 691 P+Y Y+ + A+ DG+L+ +I N E Y D + Sbjct: 338 PIYTYSLKQAIEDGYLVPYLLEERI--TNVDEEGYTGL-------------------DGK 376 Query: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDPTG--SQKTLVFCVTNAHADMVVEELRAAFK 749 + A+F R + +P A+ +L L +K++VFCV + HA + ELR Sbjct: 377 HYTTANFERDIRMPDRTTAIAEDLWEILGQYDLRDEKSIVFCVDDTHAAFMAAELRRLSG 436 Query: 750 KKYPQLEHDAIIKITGDADKDARKVQTMITRFNK--ERLPNIVVTVDLLTTGVDIPSICN 807 + D +I + R + F P + VTVDLLTTG D P + N Sbjct: 437 ------DDDYAGRIV----RSERNSHQLERNFATVGSTKPRVAVTVDLLTTGFDAPDVKN 486 Query: 808 IVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVE 867 IVF+R +RS ILY+QMKGR TRLC ++NK F IFD ++ P + + Sbjct: 487 IVFVRPLRSAILYKQMKGRGTRLCEDINKRYFTIFDYSGASQLEDAEFDGHPANRQKGAQ 546 Query: 868 LQTLVNEITDSETYKITEADGRSFAEHSHEQL-VAKLQRIIGLATFNRDRSETIDKQVRR 926 +T + TD K ++ + +A ++I + R+ +D + Sbjct: 547 PKTKPRKKTDEPAAKPAGEGISVVISDTNRYVCLADGRKIPFEEYTEQSRNFILDVSAKS 606 Query: 927 LDELCQDAAGVNFNGFA 943 LDEL N Sbjct: 607 LDELLTIWIDKNSRKEL 623 >UniRef50_B6ALE7 Putative DEAD/DEAH box helicase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALE7_9BACT Length = 756 Score = 354 bits (909), Expect = 8e-96, Method: Composition-based stats. Identities = 152/636 (23%), Positives = 248/636 (38%), Gaps = 123/636 (19%) Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGK-----DETGNQGF 296 E ++R LID +LR GW K+ + + E P E G Sbjct: 7 ETDARILIDDRLRAVGWDPADKSQVLTSVLIRNKTSPFSTTESPEDHSFAAEGEDAYSGQ 66 Query: 297 ADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADYVL + +AV+EAK+ ID ++ Y++ Sbjct: 67 ADYVLLDQRGRSLAVIEAKKQKIDPYTAKQQTLPYARSI--------------------- 105 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 PF + +NG I++ D + ++ + + Sbjct: 106 -----------------GAPFIFLSNG----------ELIYFWDYLNED--ARPVDSFFS 136 Query: 416 PEELLEMLGSEPQKQNQWFADNPGM-----SELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 +L ++ ++++ P +R YQ++A++A+++ I G++ L+ Sbjct: 137 RRDLERLVHMRSERKSLATIPIPETYVRQGETRLVRPYQKEAMQALDRTIELGKRRFLIE 196 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDI 530 + TGTGKT + RLIQ+ +RILFLVDR L QA+ A +D ++ Sbjct: 197 LPTGTGKTDLISLYLKRLIQAGYAERILFLVDRDQLARQAIEAIQDLLPVHSSY------ 250 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 L +I V +Q+++ R + +D +V DE HR Sbjct: 251 -WLKSGMVRQEKQITVCLLQTMIGRVAE----FTSGYFDVVVADECHRSI---------- 295 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAV 642 A++ L FDA+ I +TATP +T + P Y Y+ + A Sbjct: 296 ---------YGAWQTALTRFDALHIGMTATPAMYIERNTFDFYQCQDETPDYSYSIQEAF 346 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 DG+L+ I T EG + +GE D E ++ + NR + Sbjct: 347 RDGYLVPYKFATGI-TTILSEG------------ADEGEEHYDPAEFERKWTNKSTNRLM 393 Query: 703 VIPAFNRAVCNELTNY--LDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAI 760 + F+R + TG K++VF +T HA + L +P+ + Sbjct: 394 -MKEFDRISWQIYKDLAPGQRTGPGKSVVFAITKHHAARLARYLNEL----HPEAKGRYA 448 Query: 761 IKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 IT D +I RF +E P + V+V +L TG D I ++V R+VRS ILY Sbjct: 449 EVITSDIP----DANDLIRRFKREEYPQVAVSVGMLDTGFDCREILHLVLCRRVRSPILY 504 Query: 821 EQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT 856 +QM+GR TR + K F I+D + DT Sbjct: 505 QQMRGRGTRTADHIGKNKFIIYDFFKNHEYFNDSDT 540 Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 89/275 (32%), Gaps = 14/275 (5%) Query: 904 QRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPG 963 + I+ L R RS + +Q+R D G N + ++ Sbjct: 487 REILHLVLCRRVRSPILYQQMRGRGTRTADHIGKNKFIIYDFFKNHEYFNDSDTDIFSGS 546 Query: 964 FIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSL-----YGDYDTPQDFLEAFDSLVQRS 1018 + + + L ++DE + G+ ++++ ++ +V+ Sbjct: 547 GGGGEARPRPPHPVTGRKLVELGLEDEWLDAVHYIEVGPDGERVDKREYVTDWEKVVREG 606 Query: 1019 PNAQPALQAVINRPRDLTRKGLVELQEWFDRQH--FEESSLRKAWKETRNEDIAARLIGH 1076 P + + R LT + L ++ F E +LR+A++ L+ Sbjct: 607 EEGDPQIVKI-KRGESLTEEEEQILIGKLNQPTRYFNEENLRRAYRNP-----GGNLLDF 660 Query: 1077 IRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGN 1136 IR A K EE+++ + + EQ +L L K ++ D Sbjct: 661 IRTALGLVKTKTMEEKIEENFRAWLVTRELTPEQAQYLALLKNRGIVKGMVSLDDLFVPP 720 Query: 1137 FHRRGGKAMLQRTFDDN-LDTLLGKFSDYIWDELA 1170 + F + L ++ + + + A Sbjct: 721 LSLQNAGETGIELFGEQGLKQVVDDLNHSVLSQSA 755 >UniRef50_B2IMB0 Type I restriction-modification system, R subunit n=31 Tax=Bacteria RepID=B2IMB0_STRPS Length = 777 Score = 353 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 180/786 (22%), Positives = 298/786 (37%), Gaps = 118/786 (15%) Query: 234 IKRTLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETG 292 IK +SEE+ + I + GW + + E E K Sbjct: 5 IKSKKEMSEEDIKANFITPAIVSKGW-------KNGEHIAYEEYFTDGRIEVRGDKARRK 57 Query: 293 NQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDE 351 +DY L+ IA+VEAK N V A L ++ Y + D Sbjct: 58 EGKKSDYSLYYQFGTRIAIVEAKDNKHSVRAGLQQAIEYGEILD---------------- 101 Query: 352 VHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALP 411 +PF YS+NG G D L Sbjct: 102 ----------------------VPFVYSSNG----------DGFIEHDRITREERELELD 129 Query: 412 EWHRPEELLEMLGSEPQKQNQWFADNP------GMSELGLRYYQEDAVRAVEKAIVKGQQ 465 E+ EEL + E + S RYYQ+ A+ + + +GQ+ Sbjct: 130 EFPTREELFSRMTKEKGLTYEITEAISTPYYTDAFSMKTPRYYQQIAINRTIETVARGQK 189 Query: 466 EILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFN 525 ++ MATGTGKT A ++ RL ++ KR+LFL DR L +Q + ED + Sbjct: 190 RVMFVMATGTGKTFMAFQIIHRLRKAGLAKRVLFLADRNILVDQTMA--EDFKPFEKVMT 247 Query: 526 SIFDIKGLTDKFPEDSTKIHVATVQSLVKR--TLQSDEPMPVARYDCIVVDEAHRGYILD 583 I K LT +S +I++ Q L T + +D IV+DEAHRG + Sbjct: 248 KITP-KLLTAPEKLNSFEIYLGLYQQLTGEDGTETHYQKFDKDFFDLIVIDEAHRGSAKE 306 Query: 584 KEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQIFGEPVYRYTY 638 S +R+++D+F A +I +TATP + FGEP+Y Y+ Sbjct: 307 N----------------SNWRKVIDYFSSATQIGMTATPKETKNASNTEYFGEPIYTYSL 350 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADF 698 + + DGFL P +++ N V + E ++ G++I D + DF Sbjct: 351 KQGIEDGFL----APYRVMRVNLDVDVDGYRPET-GKVDANGQLIEDRY-----YGRKDF 400 Query: 699 NRGLVIPAFNRAVCNELTNYLDPTGSQ--KTLVFCVTNAHADMVVEELRAAFKKKYPQLE 756 ++ +VI + V +++Y+ ++ KT+VFCV HA+ + L Q + Sbjct: 401 DKTIVIDDRTQRVAKFVSDYMKQNNARFDKTIVFCVDIDHAERMRAALVKE-NLDLVQED 459 Query: 757 HDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRS 816 + ++++TGD + ++ + P IV T LLTTGV+ + IV ++S Sbjct: 460 YRYVMQVTGDNAEGKAQLDNFMDV--NSNFPAIVTTSKLLTTGVNAKTCRLIVLDSNIQS 517 Query: 817 RILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEIT 876 ++Q+ GR TRL P+ K F I D ++ + D P L+T ++ Sbjct: 518 MTEFKQIIGRGTRLYPQKGKEFFTIIDFRNVTNLFADSDFDG----EPVKVLETGAKTVS 573 Query: 877 DSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAG 936 S + E ++ V L + + N R + L A Sbjct: 574 GSTPGFVDEEGDPVEKYIVTDKQVTILNSTVQVLDENGKLITESLTDYTRKNILGSYA-- 631 Query: 937 VNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKS 996 N F + + ++L L+ ++ ++ +IDD + +K Sbjct: 632 -TLNDFITVWH--TADKKKLILDELYKKGVYLDAIRE-----SEGISEQEIDDFDLLLKL 683 Query: 997 LYGDYD 1002 YG + Sbjct: 684 AYGQKE 689 >UniRef50_Q5NWL0 Type I restriction-modification system (Restriction subunit) n=4 Tax=Betaproteobacteria RepID=Q5NWL0_AZOSE Length = 714 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 164/731 (22%), Positives = 271/731 (37%), Gaps = 150/731 (20%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 +E SR IDAQL+ GW+ + N E+ ADYV Sbjct: 3 NEAFSRVKIDAQLKDQGWEILNP--------------NAVRFEYVLSDGTK-----ADYV 43 Query: 301 LFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 L + +AVVEAK+ I+ ++ Y+ Sbjct: 44 LCDRHGRALAVVEAKKAAINPAEAEAQAKAYAVQLQ------------------------ 79 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 +P+ + NG E R W + + + + +L Sbjct: 80 --------------VPYIFLANGEEIR--------FWEW---EREAFPRTVKTFFAQSDL 114 Query: 420 LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTR 479 + K++ + R YQ + + + I G++++L+ MATGTGKTR Sbjct: 115 ERRAATGQVKRDPLTVQI--DKHIVERDYQTACIDKLCQEITAGRRKLLVEMATGTGKTR 172 Query: 480 TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE 539 TA A + RL ++ R+LFLVDR L +Q AF + + + T + + Sbjct: 173 TAAAFIKRLFEANAVTRVLFLVDRIPLAKQTEDAFAEHLSDFPAYVLR------TGRRFQ 226 Query: 540 DSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDY 599 D +I + T+QS+V + +D ++ DE HR Sbjct: 227 DEKRITITTLQSMVNIYHE----YSAGYFDLVISDECHRSI------------------- 263 Query: 600 VSAYRRILDHFDAVKIALTATP----------------ALHTVQIF--GEPVYRYTYRTA 641 + +L HFD +++ LTATP T++ F +P + Y + A Sbjct: 264 YGKWSGVLKHFDGIQVGLTATPCVANLGDLGDAEDKLFVRDTLRFFEVDKPTFSYKMKDA 323 Query: 642 VIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND-----TLEDDQDFEVA 696 + DG+L+ + A EG + K +++ + + D + Sbjct: 324 IHDGYLVPYQIYKAKTVKTAAEGGFEVKRGELDWSAMDTTTRAEFEKLFEGSDAIVIDPN 383 Query: 697 DFNRGLVIPAFNRAVCNELTNYLDPT-----------GSQKTLVFCVTNAHADMVVEELR 745 R IP NRA+ E L+ KT+VF VT HA+ + + Sbjct: 384 ALERKFTIPERNRAIVREFREVLEKGFTDAKGVVRKPLLGKTIVFAVTKRHAETLAQLFD 443 Query: 746 AAFKKKYPQLEHDAI-IKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPS 804 +AF + P E ++G D T I RF KE P ++V+V++L TG D P Sbjct: 444 SAFADQKPSPEVRYADYVVSGMGKDDTVDGMTKIKRFKKEPFPKVLVSVNMLDTGFDCPE 503 Query: 805 ICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST-------------L 851 + N+VF R RS ILY+QM+GR TR K F +FD V + + Sbjct: 504 VANLVFARFTRSAILYQQMRGRGTR--KAKGKPVFTMFDFVGVTDYHGDNDAEGEGGIVI 561 Query: 852 ESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLAT 911 + RP R + L + + + + DG + EQ A++ Sbjct: 562 QKAAPKRPTEPRKLLSLDIDDHIDPTTREWVTVDEDGNMVFPEASEQKQAEIGARFEAWL 621 Query: 912 FNRDRSETIDK 922 ++ + + D+ Sbjct: 622 LAQEETLSPDE 632 >UniRef50_A5GB17 Type III restriction enzyme, res subunit n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GB17_GEOUR Length = 753 Score = 346 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 149/642 (23%), Positives = 252/642 (39%), Gaps = 132/642 (20%) Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT----GKDETGNQG 295 ++E +R LID LR+ GW K+ ++ + ++ G+ G Sbjct: 1 MNETYARILIDDMLRQVGWDPRDKSEVGTEVPVYLSAGHDPAPDYAGRDSFGEPSYHVAG 60 Query: 296 FADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 ADYVL+ +P+AVVEAK+N I+ ++ Y+ Sbjct: 61 RADYVLYGQNGRPLAVVEAKKNAINPYVAKQQALPYA----------------------- 97 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 QR PF + TNG I++ D + ++ + ++ Sbjct: 98 ---------------QRIDAPFIFLTNG----------ELIYFWDYLNDD--ARIVDSFY 130 Query: 415 RPEELLEMLGSEPQKQ-------NQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEI 467 ++ ++ ++ ++ ++ R YQ++A+RA++ A+ G++ Sbjct: 131 SRRDMERLVEMRQSRKTLATIELQDYYVRQGETRQV--RDYQQEAMRALDHAVELGKKRF 188 Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSI 527 L+ + TGTGKT + RL+++ +R+LFLVDR L +QAL +D Sbjct: 189 LIELPTGTGKTDLIGLYLKRLMKAGWAERVLFLVDREQLAKQALETIQDILGE------- 241 Query: 528 FDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQT 587 + L +I VA +Q+++ E +D +V DE+HR Sbjct: 242 YSSYWLKPGTVRQEKQITVALLQTMIGCH----EDYSSGYFDVVVTDESHRSI------- 290 Query: 588 EGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYR 639 A++ L FDA+ I LTATP +T + +P + Y + Sbjct: 291 ------------YGAWQTALTRFDALHIGLTATPANYIERNTFDFYQCKDNQPDFSYRIQ 338 Query: 640 TAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFN 699 A G+L + I +G +ND D FE N Sbjct: 339 DAFAGGYLAPYRF-----------------ATGITEIIAEGADLNDEHYDPSQFERTWTN 381 Query: 700 ---RGLVIPAFNRAVCNELTNY--LDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ 754 L++ F+R + G K++VF ++ HA + L + +P+ Sbjct: 382 EKTNKLMMEEFDRLAWENYKDLAPGQKDGPGKSVVFAISKHHAARLTHYL----NQLHPE 437 Query: 755 LEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKV 814 + IT D +I RF KE P + V+V +L TG D + ++V R+V Sbjct: 438 HKGRYAEVITSDVA----DADALIRRFKKEIYPMVAVSVGMLDTGFDCRELLHVVMCRRV 493 Query: 815 RSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT 856 RS ILY+QM+GR TR P + K F I+D + DT Sbjct: 494 RSPILYQQMRGRGTRTAPHIQKKKFVIYDFFKNHEYFNDSDT 535 Score = 54.1 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 70/198 (35%), Gaps = 15/198 (7%) Query: 977 NLNDAPIFLDIDDEVVSVKSLYGDYDTPQ-----DFLEAFDSLVQRSPNAQPALQAVINR 1031 +D I L ++DE + + +++ ++ ++ + P LQ V Sbjct: 556 RPSDNLIELGLEDEWLYAVKYVEVGPNGERIDKKEYVTNWEQTIKGQTDD-PILQKVRED 614 Query: 1032 PRDLTRKGLVELQEWFD--RQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPF 1089 LT + L + + + F E +LR+A++ LI IR A LK Sbjct: 615 -EHLTNEEEELLAKRLNTPKHFFNEENLRRAYRNP-----GGTLIDFIRAALGLLKLKST 668 Query: 1090 EERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRT 1149 +ER+D +SEQ +L L L + + + Sbjct: 669 DERLDENFRAWLVARSLTSEQAEYLSLLKNRGIATGKLQLEDLFSPPLSILNAAGIGVEL 728 Query: 1150 FDDN-LDTLLGKFSDYIW 1166 F + L ++ ++ ++ Sbjct: 729 FGEKGLKEVVDDMNETVF 746 >UniRef50_C8PRL3 Type I restriction-modification system, R subunit n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PRL3_9SPIO Length = 592 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 153/644 (23%), Positives = 261/644 (40%), Gaps = 114/644 (17%) Query: 247 FLIDAQLRKAGWQADSKTLR---FSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFV 303 I + ++GW ++ F+ G G K + G + AD +L+ Sbjct: 15 KYILPAIEQSGWNMQTQMKEEVSFTDGRIFVKGR----------KTKRGIRKRADIILYY 64 Query: 304 G-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETS 362 P+AV+EAK NN A + ++ Y++ D Sbjct: 65 KANIPVAVIEAKDNNHAAGAGMQQALEYAEMLD--------------------------- 97 Query: 363 WQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEM 422 IP ++NG + + G + + + L + P+EL + Sbjct: 98 -----------IPVAVASNGDGFVIQYRNNCGQIGNNGKPIVTENADLDHFPTPDELWDN 146 Query: 423 LGSEPQKQNQWFADNP------GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 + + + A+ + RYYQ A+ +AI +G++ +LL MATGTG Sbjct: 147 YKKYNKLETKKAAETSLCPYFFDAAGRTPRYYQRIAINRTVEAIARGEKRLLLVMATGTG 206 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK 536 KT TA +++RL +S+ KRIL+L DR +L Q GD + + K Sbjct: 207 KTYTAFQIIYRLWKSKIKKRILYLADRNNLITQTKK--------GDFKHFKDKCHIIKQK 258 Query: 537 FPEDSTKIHVATVQSLVKRTLQSD--EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 + S +I++A Q L ++D + +D I+VDE HRG + + Sbjct: 259 KIDTSYEIYLALYQGLTNYDDEADAYKNFSPNFFDLIIVDECHRGSVDADK--------- 309 Query: 595 SQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQIFGEPVYRYTYRTAVIDGFLID 649 A+ +IL +F A +I +TATP L ++ FGEP+Y Y+ + + DGFL Sbjct: 310 -------AWHKILQYFSSATQIGMTATPKETKNLSNIEYFGEPIYTYSLKQGIDDGFLAP 362 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 ++ EG +G + GE+I D L + DF+R +VI Sbjct: 363 YKVL-RVGMNVDLEGYRPERG----KTDVNGEIIEDRL-----YNRKDFDRSIVIDERTD 412 Query: 710 AVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDAD 768 V ++ YL+ + KT+VFCV HA+ + + L + I++ITGD Sbjct: 413 VVAKKIMEYLNNSEPMAKTIVFCVDIEHAERMRQALLRYAAPEITGKSDTYIVRITGDDP 472 Query: 769 KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 ++ I + P I T L++TG D P++ + VR R + + A Sbjct: 473 VAKGYLEDFIN--PEAPFPVIATTSKLMSTGTDTPALTRKERVENVRKRNYWAKYGENAR 530 Query: 829 RLCPEVNKTSFKIFDCVDIY--STLESVDTMRPVVVRPKVELQT 870 R+ +D Y + +E+++ M+ + + P L T Sbjct: 531 RVLNA----------LLDKYAETGIENIEEMQVLTIEPLKNLGT 564 >UniRef50_A6LX80 Type III restriction protein, res subunit n=15 Tax=cellular organisms RepID=A6LX80_CLOB8 Length = 845 Score = 339 bits (868), Expect = 5e-91, Method: Composition-based stats. Identities = 143/743 (19%), Positives = 281/743 (37%), Gaps = 113/743 (15%) Query: 384 EYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFAD-----NP 438 E+ S I DV + W RP+ + + + +K N F N Sbjct: 176 EFENLFLNYSEIINDDVMKAYS-----KNWKRPQ-VYKDIEKAKEKDNDEFEPKEIEGNK 229 Query: 439 GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRIL 498 + + Q +A+ +E + +G + L+ ATG GKT A S+ +R+L Sbjct: 230 VIELFEPKGAQIEALYELENSREEGFDKGLVVAATGVGKTYLAA------FDSKEAERVL 283 Query: 499 FLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQ 558 F+ R + +QA +F++ R + D I + ++ + + VQ+L K Sbjct: 284 FVAHREEIIKQAAISFKNVRNSDD-------IGFFYNNTKDNDKSMIFSLVQTLGKDEYL 336 Query: 559 SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIAL 617 +E +D IV+DE H S YR+I+D+F + L Sbjct: 337 KEEYFTRDYFDYIVIDEFHHAVS-------------------SNYRKIIDYFTPKFLLGL 377 Query: 618 TATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERI 676 TATP + +F Y Y + D P + G+Y E Sbjct: 378 TATPERLDSKDVFSLCDYNTVYEIRLSDAINKGYLVPFRY------YGIYDETVNYDEVE 431 Query: 677 SPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAH 736 G+ + + L++ + N Y S + L FC + H Sbjct: 432 FRNGK-----------YNDKELEEALMLNKRGELILNHYKKY----NSNRALGFCTSRKH 476 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLL 796 A+ + + + ++ +G+ + + + + K + ++ +VD+ Sbjct: 477 AEYMAKYF--------CENRITSLAVYSGENGEYSENRTEALNKLTKGEV-KVIFSVDMF 527 Query: 797 TTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT 856 G+DIPSI ++FLR +S ++ Q GR R +K + D + Y + + Sbjct: 528 NEGLDIPSIDMVMFLRPTQSPTVFLQQLGRGLRKY--KDKKYLNVLDFIGNYKKADLLPF 585 Query: 857 MRPVVVRPKVELQTLV-------NEITDSETYKITEADGRSFAEHSH--EQLVAKLQRII 907 + ++E + + + ++I + + A+ + ++++ + R+ Sbjct: 586 LLSGKTYSRIEAKKGIFNEEEYPEDCRVDFDFRIIDVFKKLAAKEMNIKDKILEEFLRVK 645 Query: 908 GLATFNRDRSE---TIDKQVRRLDELCQDAAGVNF-NGFASRLREKGPHWSAE--VFNKL 961 L R E ID +V + + + +N N + L+E G + +E +FN + Sbjct: 646 ELVGHRPSRVEFYNNIDDEV--YSAIKKTKSSLNPFNDYLGFLKENGELFESEEALFNNI 703 Query: 962 P-GFIARLE--------KLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFD 1012 FI +E K+ + N + ++ID+E V +S Y Y + ++ Sbjct: 704 GHDFIKMIETTKMSKSYKITVFLAFYNGGKVKMEIDEEDV-YRSFYEFYHKGSNKVD--- 759 Query: 1013 SLVQRSPN---AQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDI 1069 +++ + + I +D K L++ + F E+ L K+ R+ + Sbjct: 760 -MIRDKGTADFEKWDKKKYIKLAKDNPVKFLIKSEGKFFDNG--ENKLMVLMKDMRDVIV 816 Query: 1070 AARLIGHIRRAAVGDALKPFEER 1092 +GH+R A + A + +EER Sbjct: 817 DEEFVGHMRDAIMYRAERYYEER 839 >UniRef50_C4WKW0 Type I restriction enzyme EcoEI R protein n=2 Tax=Proteobacteria RepID=C4WKW0_9RHIZ Length = 847 Score = 338 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 204/954 (21%), Positives = 333/954 (34%), Gaps = 179/954 (18%) Query: 242 EEESRFLIDAQLRKAGWQA-DSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E +R I+ L AGW+ D + P + E E +GF D++ Sbjct: 5 EAAARIKINRLLEAAGWRFFDDLNGAANVVLEPNVKLKPEHIESLGEDFENSAKGFIDFL 64 Query: 301 LFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 L KP+ V+EAK + D ++ +Y++ + R +L + + + + Sbjct: 65 LLDKDGKPLIVLEAKSEDKDPRIGKEQARKYARAQNA---RFVILSNGNIHYLWDLEQGN 121 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 T G K + + N A + I + N + W E Sbjct: 122 PTVISAFPGPDEIKNHYAFEPNAERLFAEKVERDFIVLTQMPGYANEA----AWKNEAER 177 Query: 420 LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTR 479 + + + LR YQE A++ ++K+ KG L MATGTGKT Sbjct: 178 ESFVEKQKLRF--------------LRPYQERAIQEIQKSAKKGATRFLFEMATGTGKTL 223 Query: 480 TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE 539 T+ A++ ++++ KR+LFLVDR L QA AF+ N F SI + D Sbjct: 224 TSAAVIKLFLKTRNAKRVLFLVDRLELETQADKAFKAYLKND--FTSIIYKEQRDDWRK- 280 Query: 540 DSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDY 599 I V TVQSL+ +D ++ DEAHR + Sbjct: 281 --ADIVVTTVQSLLFNDKYR-RLFSPTDFDLVISDEAHRSIGGNA--------------- 322 Query: 600 VSAYRRILDHFDAVKIALTATPA------------------------LHTVQIF----GE 631 R + ++F K+ LTATP L T + F G+ Sbjct: 323 ----RAVFEYFIGYKLGLTATPKDYLKQSKKDKPKERDPREAERRMMLDTYRTFGCESGD 378 Query: 632 PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ 691 P +RY+ V +GFLI+ P I R G + +S +G I T ED Sbjct: 379 PTFRYSLLDGVREGFLIN---PYVIDART---------GVTTKLLSDEGFTIETTAEDGT 426 Query: 692 D----FEVADFNRGLVIPAFNRAVCNELTN--YLDPTGSQ--KTLVFCVTNAHADMVVEE 743 + F DF + A NRA C L DP + K + F V+ HA + E Sbjct: 427 ENKEAFGGRDFEKRFFSEATNRAFCRALLENGLRDPISGEFGKAIAFAVSQNHALKITEI 486 Query: 744 LRAAFKKKYPQ-LEHDAIIKITGDADKDARKVQT-----------MITRFNKERLPNIVV 791 L ++ +P + D +++T D + + + + + V Sbjct: 487 LNELAEQLWPGCYQSDFAMQVTSDIPASQQMTINFANNNLGGHTGFVENYRTSK-ARVCV 545 Query: 792 TVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP---------------EVNK 836 TV ++TTG D P I N+ +R + S + QMKGR TR +V K Sbjct: 546 TVGMMTTGYDCPDILNLALMRPIFSPSDFVQMKGRGTRKHNFAEELFDPARKAALGDVQK 605 Query: 837 TSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSH 896 S+++FD E + PK L N D A + E Sbjct: 606 ASYRLFDFFANCEFFEEKFDYDQALALPKPAAMPLSNGGDDGSAI----ASKPTIYEFLE 661 Query: 897 -EQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSA 955 +Q+V +++ IGL DR + ++ +E + + H Sbjct: 662 PDQVVYQVEEQIGLEGMRIDR-----ELFQKFEETARSDPKLAELVEQRDWDAATRHVVE 716 Query: 956 EVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLV 1015 E+F+K F LEKL+ + ++ + + + + F + Sbjct: 717 ELFDKPSEFF-SLEKLRRAAGVDRRISVRELVEKAFGFIPKFK---NKGELIDDEFQKFL 772 Query: 1016 QRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIG 1075 +P + R + E++ +F+ Sbjct: 773 VD------------QKPEEADR--IREMRYFFE--------------------------A 792 Query: 1076 HIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDD 1129 +IR A V AL D + D W R+ + +K+ V L+ Sbjct: 793 YIRDAKV-RALIDAGHFADLNVNPSFTTRDLKEVPAPWRKRIPEYIKDYVSLNP 845 >UniRef50_A3RQ88 Type I restriction-modification system restriction subunit n=4 Tax=Ralstonia solanacearum RepID=A3RQ88_RALSO Length = 951 Score = 336 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 147/644 (22%), Positives = 244/644 (37%), Gaps = 130/644 (20%) Query: 249 IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVG-LKP 307 ID LR AGW A TG +G+ DYVL+ KP Sbjct: 32 IDRLLRAAGWPLTGPDDT---------------AFPITGLPTPQGKGYVDYVLWGDHRKP 76 Query: 308 IAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTS 367 +A+VEA+ + A + +Y+ + + Sbjct: 77 LAIVEARHTRRNARAGRQRARQYADGLEAMTGQR-------------------------- 110 Query: 368 GKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEP 427 P Y TNGR++ W D D +A+ +HR +EL ++ Sbjct: 111 -------PLIYCTNGRDH----------WLWD--DRTCPPRAVRGFHRKDELERLIERR- 150 Query: 428 QKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ-QEILLAMATGTGKTRTAIAMMF 486 + Q A + + R +Q A+R + +A + + + L++M +GTGKTRTA+A+ Sbjct: 151 -MRRQPLATAAIDTAIAERPHQHRAIRRIAEAFEQDRLRGALVSMPSGTGKTRTAVALAD 209 Query: 487 RLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHV 546 L++ KR LFL DR + Q A T + G T + K +++ Sbjct: 210 LLMRCHWIKRTLFLTDRAA-QLQRAAAAFATHLPGATLVDLA-------KDAAPEGDVYL 261 Query: 547 ATVQSLVKRTLQSDE--PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYR 604 +T + + D+ +D ++VD AHRG YR Sbjct: 262 STCPTALGWLDGIDDAPRFGPGHFDLVIVDVAHRGI-------------------CQQYR 302 Query: 605 RILDHFDAVKIALTATPA----LHTVQIFGE----PVYRYTYRTAVIDGFLIDQDPPIQI 656 I +FDA+ + LTATP + +FG P Y A+ D L+ + + Sbjct: 303 AIFSYFDALLVGLTATPKEAIDRNMCDVFGLAAGLPTEAYDLDEAIADHHLVPPRT-VSV 361 Query: 657 ITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT 716 R +E + E+ + + DD + + + AV + Sbjct: 362 PVRLQREAIRYDDLSDTEK-----DQRDTLEWDDGNADASAPEAADAWLHHQDAVDEMIA 416 Query: 717 NYLDPTGSQ--------KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDAD 768 ++ G + KTL+F + HA + E F YPQ + + IT Sbjct: 417 LVMEARGHRVAGGDWIGKTLIFARNHGHARFIAER----FDANYPQYKGELACVIT---- 468 Query: 769 KDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 +A + Q ++ F+ +R+P I ++ LL G+ +P + N+VF R+VRSR + +M G Sbjct: 469 YEAGQTQALVDAFSVADRMPRIAISAGLLDIGIAVPEVVNLVFFRRVRSRTRFWRMVGCG 528 Query: 828 TRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKV 866 TR C P +K +FD + +VD+ P Sbjct: 529 TRPCQDLYGPGQDKQDVLVFDFCRNLAFF-NVDSEAAAQTLPTP 571 >UniRef50_C3NN84 Type III restriction protein res subunit n=1 Tax=Sulfolobus islandicus Y.N.15.51 RepID=C3NN84_SULIN Length = 763 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 183/928 (19%), Positives = 326/928 (35%), Gaps = 194/928 (20%) Query: 238 LNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 + +E ++ L D LRK GW + + + N + E + Sbjct: 1 MPNTEADAITLCDEHLRKLGWNLEKFKKNHTLK---DLFPNISFTEN-------EGKHRP 50 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY L +G K I ++EAK+ +D+ A + E+ +K + Sbjct: 51 DYTLILGDKVI-LIEAKKKGVDLRAAIAEARESAKILRKYGV------------------ 91 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 +P+ Y+ +G++ WY D + + + +PE Sbjct: 92 ---------------NVPYIYACDGQK-----------WYMQNLDANTVETQVERFLKPE 125 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 E+ L N L LR YQ+ AV+ + + + G++ +L+ MATGTGK Sbjct: 126 EVSVTLNPVSSSINA----------LDLRNYQKIAVQQIITSFLSGKKRMLVEMATGTGK 175 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 T +A + +L+ + K +L+LVDR SL Q F ++I+ L+ Sbjct: 176 TEVVMAAIAKLLDEGKVKNVLYLVDRDSLATQTYQRFNAR------LGDKYNIRKLSGDI 229 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 + S I ++TVQ L + + + IV+DEAHR Y D Sbjct: 230 NDLSADIIISTVQMLY--VDEKFKLFNSDHFQLIVLDEAHRSYYGD-------------- 273 Query: 598 DYVSAYRRILDHFD-AVKIALTATPAL----HTVQIFGEPVYRYTYRTAVIDGFLIDQDP 652 + +++ +F+ A + LTATP + FG P++RYTY V DG+L D Sbjct: 274 -----WHKVVQYFNKAAVLGLTATPKIDKDVDNFAYFGYPIFRYTYSRGVKDGYLADTIY 328 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC 712 + +T G++ + DF+ D + + IP N + Sbjct: 329 -YKFLTNVDIYGIH---------------------DLGYDFDPNDLGKKVDIPMRNELIA 366 Query: 713 NEL---TNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKK-KYPQLEHDAIIKITGDAD 768 + N+ + +K +VF + HA+ + + + ++ +I Sbjct: 367 EKYFEAINFKETKELKKAIVFAASIKHAENLRLAFIRKYNELMGYSPDNAEAEEIFRSIH 426 Query: 769 KDARKVQTMITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 + ++ F + + TVDLL+TGVD P + IV R +SR+LY QMKGR Sbjct: 427 SAIPNHEELVREFQSPNSRIKVAFTVDLLSTGVDAPDVEVIVMARPTKSRVLYLQMKGRG 486 Query: 828 TRLCPEVN--KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITE 885 TR+ E N K F + D VD + E Sbjct: 487 TRIYKEGNKVKDKFYLIDFVDTWRL--------------------------------ENE 514 Query: 886 ADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASR 945 D E ++ + + I L + T K+ + ++ ++ ++ Sbjct: 515 EDKPITNEDIVKEEEEEEKEISELMGSTEEPQRTTAKKEVKREQKREEMVILDIPVSIVY 574 Query: 946 LREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQ 1005 P + + R ++K + + I + V Sbjct: 575 AEVITPENFKNELKGISEQVVR--QVKAYLQAQEEVQIKKTQFETAVR------------ 620 Query: 1006 DFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETR 1065 +FD +++ + L L EL+ + + Q E L+ + E Sbjct: 621 ----SFDYFYRKNGG------------KTLNENYLKELEAFLNEQGITEDVLKDTYGEP- 663 Query: 1066 NEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKV 1125 A L + A EER + + + + E L K Sbjct: 664 ----DATLKDFVEVALGLKTFPTPEERKRNLIKEWYNKKGYPKECERLFMALYDFRKRNP 719 Query: 1126 VLDDDV-FKTGNFHRRGGKAMLQRTFDD 1152 +D F + GG + ++ F+D Sbjct: 720 NIDKKAFFNAEVVKQAGGFSKVKGCFED 747 >UniRef50_B5Y627 Type I restriction-modification system, R subunit n=2 Tax=Clostridia RepID=B5Y627_COPPD Length = 748 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 173/679 (25%), Positives = 266/679 (39%), Gaps = 148/679 (21%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 +EE ++ LID LR W + E+P E ADY Sbjct: 10 TEENAKSLIDEHLRALNWNLAD--------------FTQITKEYPIPGGE-----RADYA 50 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 + V P+A++EAK+ +D+ A L ++ Y+K + L Sbjct: 51 ILVNSLPVAIIEAKKQGMDLNAALAQAKNYAKKLNESGKEVFL----------------- 93 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 ++++G+ + YR + + E+ Sbjct: 94 ----------------IFASDGKVF-----------YRQNLKANTRPEKISRLMTYAEIK 126 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 + L E GLR YQ+ AV V A G+ + MATGTGKT T Sbjct: 127 DFLNPETDILLA-----------GLRNYQKIAVSQVVSAFQLGRDRTYIEMATGTGKTIT 175 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED 540 A ++ +L + +R+LFLVDR SL EQ + +F ++ GDTF I LT + Sbjct: 176 AAGIISKLYKVGLVRRVLFLVDRDSLAEQTVRSF--NKVLGDTF----KINRLTGTKEDK 229 Query: 541 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 I V+T+Q L P +D +++DE HR Y D Sbjct: 230 YNDISVSTIQFLY--VNDKYRAYPNNFFDLVILDECHRSYFGD----------------- 270 Query: 601 SAYRRILDHF---DAVKIALTATPA----LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPP 653 + +++HF A + LTATP+ T FGEPV+RY+Y V DG L + Sbjct: 271 --WHTVIEHFRTGKAKVLGLTATPSDKETQSTDDYFGEPVFRYSYYQGVKDGILAFTE-R 327 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCN 713 + +T G++ + DFE D R + +P N + Sbjct: 328 YKFLTNVDLSGIH---------------------DMGFDFEPEDLGRRVDVPRRNELIAE 366 Query: 714 ELTN---YLDPTGSQKTLVFCVTNAHADMVVEELRAAFKK-----KYPQLEHDAIIKITG 765 + Y KTLVF + AHA+ + + L + + K D I+ I Sbjct: 367 KYFEVIGYEQTHTIPKTLVFAASIAHANHLRDALITKYNELNKLPKDSSEAEDFIVVI-- 424 Query: 766 DADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMK 824 R +I +F + + I V+VD+L+TG+D P I +V R +S+ILY QMK Sbjct: 425 --HNQVRNASELIRKFQEIDSEIRIAVSVDMLSTGIDAPDIEVLVMARPTKSKILYVQMK 482 Query: 825 GRATRLCPEVN----KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSET 880 GRATR C E K SFK+ D VD+ + +E V T + ++ +D E Sbjct: 483 GRATRKCNEQEHGKTKESFKLIDFVDL-AGIEEVVTDETLETDEIIDTTEETEVSSDGEK 541 Query: 881 YKITEADGRSFAEHSHEQL 899 + DG E++ Sbjct: 542 IPSDKEDGEGKEPKETEKI 560 >UniRef50_C9LYN5 Type I restriction-modification system R subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LYN5_9FIRM Length = 742 Score = 323 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 160/877 (18%), Positives = 289/877 (32%), Gaps = 169/877 (19%) Query: 5 SNFEFL--KGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHL---GLLLNIPPC 59 SNF+FL + A AE + I + + + L +P Sbjct: 3 SNFDFLMARKDYKAIAKTAMEAERRFGTSYPECAILAERAVKLAVRWMFTHDAGLALPYR 62 Query: 60 ENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVH-EYHNDLNDAQMCLRLGFRLAVWY 118 E L+ E + S+ H + +GN + +A + LR W Sbjct: 63 EAIARLIHEPTLKKLRPAGMNSLVHYILHLGNVVAYRGMDVSREEALLALRGLHAALSWL 122 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 + F F +E +L + +E + A + +++ A Sbjct: 123 AACYEEG--FSPTPFDESLLPTG--GKEHNANPLKLLELYKEPFEGGALLPRRKKNREAS 178 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL 238 + A+ E + + + A L Sbjct: 179 EKFAALREKNRNGSVVEVPADL-------------------------------------- 200 Query: 239 NLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 L+E R+ L+D+ +AGW E A E K T + F Sbjct: 201 -LAETRGRYILVDS--AQAGWTLG------------EDFFMNAQIEGAGKKTPTIDILFT 245 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 D KP+AV+ K + ++ ++ + + + + Sbjct: 246 D----AEKKPLAVMAVKAAEHSAEDGVAQAKEWATLVEQKYGERPYIF---------LLR 292 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 E + D + I C+S G E R + D Sbjct: 293 EGGYCYLDEASGTLRPIHGCFSRAGLERRLRFRRL--------YDPDGHPDL-------- 336 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 ++ R YQ++AV + + + +G + +L++ GTGK Sbjct: 337 ----------------------AGDIVNRPYQQEAVWRICEDVHRGVRRLLVSTPPGTGK 374 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TR A + L+ + ++L+L DR L QA F + + + D++ Sbjct: 375 TRMAAGAIEALLHQKAVSKVLYLADREELVHQAYEQFRMLLPDAKLVDLLGDVRE----- 429 Query: 538 PEDSTKIHVATVQSLV-----KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQ 592 E I AT ++ RT A +D +++DE+H D Sbjct: 430 -EAQADIVFATATIMMDAVNESRTETGARLYDPAHFDLVIIDESHPSIYDDHLV------ 482 Query: 593 FRSQLDYVSAYRRILDHFDAVKIALTATP-----ALHTVQIF----GEPVYRYTYRTAVI 643 IL++FDA+ + ++ P + + G+P + Y+ A+ Sbjct: 483 -------------ILNYFDAILLGFSSLPPTAPGEAEVYRFYDLAPGKPTFAYSLAEALR 529 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV 703 DG+L+D + + + + + +R + E + +DF+V N L Sbjct: 530 DGWLVDFTLRDEAPEGVMEPRLLYADLTEEQRTIAEMEYSDTGAIASKDFDVPAVNNWLF 589 Query: 704 IPAFNRAVCNELTNYLDPTGS---QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAI 760 +A+ L + T KT++F + A + F++ +P+ D I Sbjct: 590 SEETIQAMLENLLQHGLKTPDGKLGKTIIFAKNSLQAKAIA----FIFQRLHPEYGADFI 645 Query: 761 IKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 + A VQ + I V+VD+L TG DIPS+ N+VF RKV S + Sbjct: 646 RALDARTPDLAEAVQAF---SLSDEQLTIAVSVDVLDTGFDIPSVENLVFFRKVHSLSKF 702 Query: 821 EQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLE 852 QM GR R C + +K F + D ++ + Sbjct: 703 SQMLGRGMRFCADLNGAGKDKEKFLVMDYCKNFTFFD 739 >UniRef50_C2CPV5 Restriction modification enzyme r subunit protein (Fragment) n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CPV5_CORST Length = 598 Score = 322 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 143/682 (20%), Positives = 260/682 (38%), Gaps = 128/682 (18%) Query: 128 FPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEG 187 F V + + Q++L L+++L++ E + ++ + +AL +A Sbjct: 18 FDVAILRAAPKQAAQSRQQLLALQRELDRLAAESDGFRLQLSEAEAAQLALERELAEQAR 77 Query: 188 KQQETEAQTQARLAALEA---QLAEKNAELAKQ-TEQERKAYHKEITDQAIKRTLNLSEE 243 ++ + L ++ AEL ++ EQ+ E L SE Sbjct: 78 EKAAAQETADDALREAREARERVKHLEAELRERYLEQQEAVRASEEASAVDLPPLARSEA 137 Query: 244 ESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLF 302 ++R +ID L AG+ L E+P + DYV + Sbjct: 138 DTRRDIIDPMLADAGFSVAGGNLT---------------VEYPI------EDLYIDYVAW 176 Query: 303 V-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 +P+A++EAK+ + ++ Y++ Sbjct: 177 GTDGQPLAIIEAKKTERSINDGRVQAEDYAEAL--------------------------- 209 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTR---NMSKALPEWHRPEE 418 G++ ++P + TNG + R W RD ++ + E+ Sbjct: 210 ------GRKFGRVPLVFYTNGHDVR--------FWDRDAELPGGYCYEARQVEEYPTAAA 255 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 + E++ ++Q + +S++ R YQ+ +RAV + G + LL MATGTGKT Sbjct: 256 MEELIRRRGKRQP---LETTELSDIAARPYQQQMLRAVSERFAAGHRRALLVMATGTGKT 312 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP 538 R +I+++ L+++ + +LFL DR++L QA AF + + N + + Sbjct: 313 RVSISLVKMLMEAGWVRNVLFLADRKALARQAHSAFVEHLPGSNPVNLLAN--------K 364 Query: 539 EDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLD 598 E + +++V+T +++ + E +D IVVDEAHR Sbjct: 365 EATGQVYVSTYNTMID-MVGPTERFGSFDFDLIVVDEAHRSI------------------ 405 Query: 599 YVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFLIDQ 650 YRR+ ++FDA + LTATP +T + F G P Y A+ DG+L+ Sbjct: 406 -YQRYRRLFEYFDAAVVGLTATPRSNVDHNTYRFFGCEPGAPTGYYGLDKAIEDGYLVAP 464 Query: 651 DPPIQIITRNAQEGVYLSKGEQVERI-----SPQGEVINDTLEDDQDFEVADFNRGLVIP 705 + + ++GV S+ E++ + D LE + A+ NR L Sbjct: 465 K-LFRGDSLFMRQGVKYSELSSEEQLEWDMKDWGSDESGDPLEAPGEITSAEMNRVLYNL 523 Query: 706 AFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 R V ++ G KT++F T HA+++ E R P Sbjct: 524 DTIRQVLAQVIERGIKVGGADRLGKTIIFARTQRHAELIAEVFRTLL----PPAAGTRCE 579 Query: 762 KITGDADKDARKVQTMITRFNK 783 IT + + +I RF Sbjct: 580 VITH----GVKDAEGLIDRFKD 597 >UniRef50_B5H9V0 Type III restriction enzyme n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H9V0_STRPR Length = 790 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 176/807 (21%), Positives = 296/807 (36%), Gaps = 129/807 (15%) Query: 439 GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRIL 498 + LR Q +++A+EK++ G Q L+ MATG GKT T + +RL++ +R+L Sbjct: 2 RLDYKRLRSAQYKSIKALEKSLAGGNQRALIQMATGAGKTYTVVQSSYRLLRHAGARRVL 61 Query: 499 FLVDRRSLGEQALGAFEDTRINGD--TFNSIFDIKGLTDKFPEDSTKIHVATVQSL---- 552 FLVDR +LG+QA + D G + ++ + DS KI ++T+Q L Sbjct: 62 FLVDRNNLGKQAYNEYRDFVPLGARTPLHEQMPLRLFSKGAVADSDKIVISTIQRLWCKL 121 Query: 553 --VKRTLQSDEPM---------------------PVARYDCIVVDEAHRGYILDKEQTEG 589 + DE P +D IVVDE HR Sbjct: 122 SGIPVPADDDESFETERADRLAGSVASVGYCPDLPPDFFDVIVVDECHRSI--------- 172 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEP-VYRYTYRTAVIDGFLI 648 +R +L++FDA I LTATP T F V +YTY AV D + Sbjct: 173 ----------YGRWRPVLEYFDAHVIGLTATPIHQTFAFFDNNLVSQYTYEQAVADSVNV 222 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN---------------DTLEDDQDF 693 D D +I TR ++G + + +N ++E D + Sbjct: 223 DYDI-YKIGTRITEQGSVIPALSTEVLPDGTVQQVNSVIAKVHKLTRAEHWQSVEADDPY 281 Query: 694 EVADFNRGLVIPAFNRAVCNELTNYL----------DPTGS-------QKTLVFCVTNAH 736 + N+ + R + + L TG KTL F + H Sbjct: 282 ARTEVNQRVRSTDQIRLIVETFRDNLFTEIFPPTVDQETGEVQSREIVPKTLFFAQNDLH 341 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLL 796 AD +VE +R AF KIT A + ++ F +R I VTVD++ Sbjct: 342 ADAIVEAVRTAF----GGAGDGFCRKITSQASRP----DKALSDFRNKRDLRIAVTVDMI 393 Query: 797 TTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN----------KTSFKIFDCVD 846 TG DIP++ +VF+R +++ +EQMKGR R +++ K F I D V Sbjct: 394 ATGTDIPALECLVFMRDIQTWSYFEQMKGRGARTVKDLDLVKVTADAVHKDRFVIVDAVG 453 Query: 847 IYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRI 906 + RP+V + +L + E ++ D + +L +L Sbjct: 454 VTEH--PKTDARPLVRDDAKPVPSLERLLRACERGELLHPDDIATLAGRLSRLGRRLDER 511 Query: 907 IGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIA 966 A + + + R DA R P E+ + + +A Sbjct: 512 GRAAIEEYLGVDQTYEGMVRSLVRAADAERPA----LVRAESSAPEEDGEIADAVGLLVA 567 Query: 967 RLEKLKTDINNLNDAPIFLDI--DDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPA 1024 E + D+ + +D D+++ + + + ++ + + + + A Sbjct: 568 SEELRAALLRAARDSWLLVDHLSQDQLLEA-RGLRNEEEARRVVDDWRAYMAEHEDDMLA 626 Query: 1025 LQAVINRPRDLTRKGLVELQEWF-----DRQHFEESSLRKAWKETRNEDIAA-------R 1072 L+ R R+ L EL+ R+ + E+ L KA+ + + AA Sbjct: 627 LRIAFQE-RRPPREVLRELKALIGKVRATRREWTEARLWKAYVDLKIARGAARRNAGLVE 685 Query: 1073 LIGHIRRA--AVGDALKPFEERVDHALTRIKGEND-----WSSEQLSWLDRLAQALKEKV 1125 + IR G+ +P+ V+ L + + + Q +WL ++ + Sbjct: 686 FLSVIRYELGLDGNEFRPYRSTVEGRLEEWLARQETAGVAFDNRQRAWLRQVVNVVAANA 745 Query: 1126 VLDDDVFKTGNFHRRGGKAMLQRTFDD 1152 L G GG F D Sbjct: 746 TLTVASLDEGRRAAAGGYGDFVDAFKD 772 >UniRef50_Q8EUU6 Type I restriction-modification system R subunit n=1 Tax=Mycoplasma penetrans RepID=Q8EUU6_MYCPE Length = 622 Score = 303 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 130/583 (22%), Positives = 238/583 (40%), Gaps = 59/583 (10%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 RYYQ A+ + + KG+ ++LL +ATGTGKT A +++RL +S K+IL+L D Sbjct: 5 HPPRYYQRVAINKTVEEVAKGKNKLLLVLATGTGKTYVAFQIIWRLWKSGIKKKILYLAD 64 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD-- 560 R L +Q + GD + + + + S +I+++ Q L + + + Sbjct: 65 RNILIDQTIA--------GDFKPFKNSLYKIEKRNMDTSYQIYLSLYQQLSESNEEDNLE 116 Query: 561 ---EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIA 616 +D I+VDE HRG + S +R+IL++FD A KI Sbjct: 117 LLKRSFKPDFFDLIIVDECHRGSARND----------------SNWRKILEYFDSATKIG 160 Query: 617 LTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQ 672 +TATP + + FGEP+Y Y+ + + DG+L P ++I N + + E+ Sbjct: 161 MTATPKETSEISNIDYFGEPIYTYSLKDGINDGYL----APFEVIRFNTNIDSFGYRPEK 216 Query: 673 VERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS-QKTLVFC 731 ++ +G ++ D + D N +VI ++ V +T++L T +KT+VFC Sbjct: 217 -GKLDVEGNLVEDRF-----YNPRDINTKIVIEERDKLVAKCITDFLKKTDRNKKTIVFC 270 Query: 732 VTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVV 791 V HA+ + L + +++ITGD + + P IV Sbjct: 271 VDIEHAERMRRALANE-NSDLCAKDSRYVMRITGDESTGKGESENFCDDDLD--YPTIVT 327 Query: 792 TVDLLTTGVDIPSICNIVFLRKV--RSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYS 849 T LLTTGV+ + IV ++Q+ GR TR+ + NK F I D Sbjct: 328 TSKLLTTGVNCRTCKVIVLDNNFGENGMTEFKQIIGRGTRIQEDKNKLYFTILDFNGASR 387 Query: 850 TLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGL 909 P + +L+ + + E D + +++ + + + Sbjct: 388 FFADEKFNGPEIKSLDYDLKD-FTGDGFTYNFPEDEIDDTEDGIETRKKIYVNSEEVKLV 446 Query: 910 ATFNRDRSET---IDKQVRRLDELCQDAAGVNF---NGFASRLREKGPHWSA-EVFNKLP 962 + + E I + + + +D F N F + ++K Sbjct: 447 SEIKQYYDEEGKIITQDFKLFEVDARDYILKEFGQYNDFLNFWKDKDKRVIILNELENKG 506 Query: 963 GFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQ 1005 FI ++ +L ++++D + I + + + P+ Sbjct: 507 FFIKKIRELFNSDSSVDDFDLLCKIAYGMKPITR-KERANKPK 548 >UniRef50_B3EE95 Type III restriction protein res subunit n=4 Tax=Bacteria RepID=B3EE95_CHLL2 Length = 846 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 186/934 (19%), Positives = 316/934 (33%), Gaps = 197/934 (21%) Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARP-----EPGVNKAIAEWP--TGKDETGNQ 294 E +R I+ L AGW+ F +G P EPGV E E + Sbjct: 5 EATARIKINKLLEAAGWRF------FQEGKAPANVCLEPGVTIKSTELDAFGTNFEQSTK 58 Query: 295 GFADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 GF D++L P+ V+EAK N + ++ +Y++ + Sbjct: 59 GFVDFLLLDAKGFPLLVLEAKAENRNPLVGKEQARKYARSQN------------------ 100 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGR-EYRATMKTKSGIWYRDVRDTRNMSKALPE 412 F +NG + ++ S +++ Sbjct: 101 --------------------CRFVILSNGNLHFFWDLERGSPYVITSFPTPDSVTGYQKV 140 Query: 413 WHRPEELLE--------MLGSEPQKQNQW----FADNPGMSELG----LRYYQEDAVRAV 456 P+ L+E +L P Q++ A+ PG + LR YQ A+R + Sbjct: 141 SPNPQRLIEEPISEDYIVLTQHPNYQSEAGWRNEAERPGYIQTNKLRFLRQYQLKAIRTL 200 Query: 457 EKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFED 516 + A+ G+ L MATGTGKT TA A++ ++S +R+LFLVDR L QA AF Sbjct: 201 QAAVGDGKDRFLFEMATGTGKTLTAAAVIKLFLRSGNVRRVLFLVDRLELEGQAKKAFAT 260 Query: 517 TRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEA 576 + F ++ + D +I V TVQS++ + +D ++ DEA Sbjct: 261 VLSSD--FQTVIYKENRDDWRR---AEIVVTTVQSMLFNNKYQ-KLFSPTDFDLVISDEA 314 Query: 577 HRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA-------------- 622 HR + R + D+F K+ LTATP Sbjct: 315 HRSIGGNA-------------------RAVFDYFIGYKLGLTATPRDYLRRFDSSNPGTR 355 Query: 623 ----------LHTVQIFG----EPVYRYTYRTAVIDGFLIDQ---DPPIQIITRNAQEGV 665 L T + FG +P +RY+ V +GFLI+ D +I T E Sbjct: 356 DPREAERRLLLDTYRTFGCENSQPTFRYSLLDGVKEGFLINPTVVDARTEITTTLLSEEG 415 Query: 666 YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD----P 721 ++ Q Q F+ +F + N +C Sbjct: 416 FVVSFTDDTGEDQQ-----------QTFKQREFEKRFFADTTNHLLCKTFLENAMRDPVS 464 Query: 722 TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ-LEHDAIIKITGDADKDARKVQTMITR 780 K+++F V+ HA +V+ L + +P + D +++T Q Sbjct: 465 GEIGKSIIFAVSQNHAAKLVQILNQMADRMFPNKYQSDFAVQVTSQIP----DAQQFTIN 520 Query: 781 FNKERLP--------------NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 F L I VTV ++TTG D I NI R + S + Q+KGR Sbjct: 521 FANNNLLGSGNFIPTYKTSKARICVTVGMMTTGYDCTDILNIGLFRPIFSPTDFIQIKGR 580 Query: 827 ATRLCP---------------EVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTL 871 TR + KT+FK+FD E V+ P Sbjct: 581 GTRKHDFRELLFNDTIKDVVLQPIKTAFKLFDFFANCEYFEDEFNYDEVLKLPP------ 634 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELC 931 T + G ++E L A + + + + + + +++ Sbjct: 635 ----TKGKGDDDGGGQGPVIVGGTYEHLGADIMASMRVEEITAEGMKIDRMFFEKFEDVI 690 Query: 932 QDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEV 991 + V A + + + EVF+K P L+KL+ + ++ Sbjct: 691 RADETVASAVEAGQWDRVIDYVNREVFDK-PEEYYTLDKLRKAAAVDRRLTLREILEKVF 749 Query: 992 VSVKSLYGDYDTPQDFLEAFDSLVQRS----PNAQPALQAVINR-PRDLTRKGLVELQEW 1046 + + + E F V P+A PA++ + +++ +++ Sbjct: 750 GLIPRFKSKDELLE---EEFSKFVADRIPEPPSAIPAIKTYFKAYVTSNRVRDIIDSKQF 806 Query: 1047 FD---RQHFEESSLRKAWKETRNEDIAARLIGHI 1077 D +F R A E + + ++ Sbjct: 807 TDLATNPYFTTHDFR-AVPEKYRVLVPEYIKDYV 839 >UniRef50_C5DHE1 KLTH0E03630p n=2 Tax=Saccharomycetaceae RepID=C5DHE1_LACTC Length = 672 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 118/528 (22%), Positives = 198/528 (37%), Gaps = 73/528 (13%) Query: 431 NQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQ 490 N + S L LR YQ + + ++I +G++ I +++ATG GKT ++ RL + Sbjct: 19 NSLCLASRPYSSLALRDYQHECIDRCLESISQGRRRIGVSLATGGGKTVIFSNLIDRLRR 78 Query: 491 SQRFK--RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVAT 548 R L LV RR L +QA + F I+ K +S + VA+ Sbjct: 79 ESGKSGYRTLILVHRRELAQQACRVLQAFFP-----GLNFQIEMGNYKCDINSADVVVAS 133 Query: 549 VQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILD 608 VQSL++R E + D I++DEAH +Y RIL+ Sbjct: 134 VQSLIRRL----ERYDPSCIDLIIIDEAHHA-------------------AAKSYLRILE 170 Query: 609 HFDAVK-------IALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNA 661 HF A + +AT + AVID + + I + Sbjct: 171 HFKANHKDSILPVVGFSATFERADNKALS----------AVIDEIVYHRGILEMIDDKWL 220 Query: 662 QEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDP 721 EG + + ++ ++D DF + ++ + N+ V D Sbjct: 221 CEGRFTTVSVSLD--------LSDVAVTGSDFNIDGLSKVVNTKEVNKVVLQTYLQKRDL 272 Query: 722 TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRF 781 + TL+F H +E L + F K ++ +TG + R ++ F Sbjct: 273 HKLRSTLLFGCDIKH----IETLHSLFVKHGVNAQY-----VTGKTRQSER--DAIVEDF 321 Query: 782 NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKI 841 + R+ +++ + T G DIP++ +I+ R +SR L QM GR RL K I Sbjct: 322 KRGRI-EVLMNCGVFTEGTDIPNVDSILLCRPTKSRSLLVQMIGRGLRLHHS--KKHCHI 378 Query: 842 FDCVDIYS--TLESVDTMRPVVVRPKVELQTL--VNEITDSETYKITEADGRSFAEHSHE 897 D V + + V ++ TL + I D K EA+ + AE E Sbjct: 379 IDFVGASTVGVVSFPTLAGVEAVSTGLDEATLQDLKAIKDEIVAKQLEAERKVLAEKEAE 438 Query: 898 QLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASR 945 L+ + R + + D + T K + + G + S Sbjct: 439 SLLKRQFRDLMKSANAFDLTLTTYKDFKSFYQQMAATNGSQEQDWGSE 486 >UniRef50_Q4P241 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P241_USTMA Length = 775 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 96/483 (19%), Positives = 173/483 (35%), Gaps = 58/483 (12%) Query: 423 LGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAI 482 L + + AD+ LR YQE+ ++ A+ G I ++ TG+GKT Sbjct: 68 LSEQTPTASIATADDSAAPAFSLRPYQEECIQDCLSALDCGVTRIGVSSPTGSGKTTIFT 127 Query: 483 AMMFRL--IQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED 540 ++ RL +R+ +V+ L QA A +I+ + Sbjct: 128 HLIDRLPPRSDTGGQRVAIIVNSIELALQAANAVTSMFPEKSV-----EIEQGSKYRASG 182 Query: 541 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 + VAT Q+L R+ Q + + +VVDEAH Sbjct: 183 MADVTVATYQTL-NRSQQRLDKFDPDEFKAVVVDEAHHA-------------------AA 222 Query: 601 SAYRRILDHFDA-VKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITR 659 +Y ++L HFD + + L +V PV ++ + DG + + + + Sbjct: 223 PSYLKVLSHFDPLIGLGLEQRQGQCSVPTASVPVIGFSATFSRHDGLALGKVFDRIVFHK 282 Query: 660 NAQEGVYLSKGEQVERISPQGEVINDTLE---DDQDFEVADFNRGLVIPAFNRAVCNELT 716 + E + + S + ++ +++ + DF + + N+ + Sbjct: 283 DFLEMIGEKWLCPIRFTSIKADIDLASVKISNLNSDFATSSLAAVVNTEVVNKIILKAWI 342 Query: 717 NYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQT 776 + + TL+F V H + R+A + G R+ Sbjct: 343 DRAHKH-RRSTLIFAVNIEHVQELTNTFRSA---------GIDARYLHGGTPMPERR--Q 390 Query: 777 MITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNK 836 ++ F P ++V +LT G D+P+I ++ R RSR L+ QM GR RL P+ K Sbjct: 391 LLEDFRNGVYP-VLVNCAILTEGADVPAIDCVLLARPTRSRNLFSQMIGRGLRLSPKTGK 449 Query: 837 TSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSH 896 + D V + VV P + + + + A+G H Sbjct: 450 KDCLVLDIVGNIE--------KGVVCTPT------LFGLDADDIIEDESAEGLLERSHQA 495 Query: 897 EQL 899 EQL Sbjct: 496 EQL 498 >UniRef50_A7HMW9 Type III restriction protein res subunit n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HMW9_FERNB Length = 848 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 132/734 (17%), Positives = 241/734 (32%), Gaps = 129/734 (17%) Query: 404 RNMSKALPEWHRPE---ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI 460 +N+ K + + E L EM G ++ ++ P + Q++ +R + Sbjct: 201 KNLEKDIYVFESDECETNLEEMEG--IEQSKSELSNLP----IIPNEVQQEVLRELNNTR 254 Query: 461 VKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRIN 520 +G + L+ +ATG GKT A S +F R+ F+ R + +QA FE R Sbjct: 255 AEGFTKALVVLATGVGKTFLAA------FDSMQFNRVFFIAHREEILKQAKSTFEKVRPT 308 Query: 521 GDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGY 580 + T + I A+V ++ K +D+ P +D I++DE H Sbjct: 309 S-------RMGFFTSSGKDTDADIVFASVFTIGKEEYLNDDYFPPDYFDYIIIDEFHHA- 360 Query: 581 ILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPAL-HTVQIFGEPVYRYTY 638 +Y+++L +F+ + LTATP +F Y Y Sbjct: 361 ------------------AAESYKKLLSYFNPKFLLGLTATPERMDGKDVFEICDYNVVY 402 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADF 698 + D P G E + +I D ++ + Sbjct: 403 DLRLPDAINRGYLVPFHYY------------GIYDETDFSKIPII------DGHYKEDEL 444 Query: 699 NRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 + L++ V + Y G ++ + FCV+ HA+ + + + Sbjct: 445 EKALMLHKRADLVLQKYVKY----GRKRAIGFCVSRNHAEYMADYFNKN--------GVN 492 Query: 759 AIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRI 818 A +G+ ++A I + R +++ TVD+ GVDIP I ++FLR S Sbjct: 493 ACAVYSGEQGRNALPRWEAIEKLKN-REIDVIFTVDVFNEGVDIPEIEMVMFLRPTESTT 551 Query: 819 LYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTM------------RPVVVRPKV 866 ++ Q GR R K + D + Y V + R + + Sbjct: 552 VFIQQLGRGLR--KAKGKKYLIVLDFIGNYKNAVLVPFILTQKEYDISLLRRELDTKKLS 609 Query: 867 ELQTLVNEITDSETYKITEADGRSFAE--HSHEQLVAKLQRIIGLATFNRDRSE------ 918 E+ L +K+ + + E E + + RI R E Sbjct: 610 EVLELPKGCEVEFEFKVVDLIRKMAKELQQIEEIIFNEYLRIKEFLGHKPLRHEFYKYVE 669 Query: 919 -TIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINN 977 + +RR +L + F L E + ++ FI K+ Sbjct: 670 KVVYNNIRRNSKLNILRDYIAFLNNHGELDENERAICNTIAHRFINFIETTNMTKSYK-- 727 Query: 978 LNDAPIFLDIDDEVVSVKSLYGDYDTP------QDFLEAFDSLVQRSPNAQPALQAVINR 1031 + V + + P D +F NA R Sbjct: 728 --------------MPVLLAFYNNGNPKLCVTSDDIYMSFKEFYSNPSNAVDLKMHSSTR 773 Query: 1032 PRD-LTRKGLVELQEWFDRQHFEESSLRKAWKETR----NEDIA-----ARLIGHIRRAA 1081 + + V+L E++ ++ NE++A I H R A Sbjct: 774 DFETWGKDEWVKLSRKTPEHFLEQTHGEFFKRKGELFCLNEELARFFNNKAFIEHFRDAI 833 Query: 1082 VGDALKPFEERVDH 1095 ++ ++ER+ H Sbjct: 834 EYRTIRYYKERIKH 847 >UniRef50_A4XFJ4 Type III restriction enzyme, res subunit n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFJ4_CALS8 Length = 899 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 119/627 (18%), Positives = 207/627 (33%), Gaps = 89/627 (14%) Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 + E +E K ++ + L R Q +A+ ++K +G L+ AT Sbjct: 257 YDKSTFAEKDDTEQSKTQHKKPNSRKIVPLYPREAQTEALYWLKKCREEGLDRALVVAAT 316 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGL 533 G GKT A S FK +LF+ R + QA +F+ R N I Sbjct: 317 GIGKTFLAA------FDSIGFKTVLFVAHREEILRQAALSFKTIRSNA-------TIGFF 363 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 T E I A+VQ+L K + ++ I++DE H Sbjct: 364 TGDRKETEKDIIFASVQTLGKEEYLNPTYFSSDYFEYIIIDEFHHAV------------- 410 Query: 594 RSQLDYVSAYRRILDHFDA-VKIALTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQD 651 +Y+ I+++F + LTATP +F Y Y + D Sbjct: 411 ------AKSYQNIINYFKPKFLLGLTATPERLDNKDVFELCNYNVVYELRLKDAINKGYL 464 Query: 652 PPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAV 711 P G+Y + E + ++ + + L+I + Sbjct: 465 VPFHY------YGIYDETD------------FSQIPEINGKYKEDELEKVLMIHKRADLI 506 Query: 712 CNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 + QKTL FC + HA+ + + K +G+ K+A Sbjct: 507 LKNYLKF----NKQKTLAFCCSRNHAEFMADYFNKNGVK--------CCAVYSGEQGKNA 554 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 + I + ++ ++ TVD+ GVDIP I ++FLR S ++ Q GR R Sbjct: 555 LQRSEAIRKLKNGQI-KVIFTVDMFNEGVDIPEIDMVMFLRPTESPTVFLQQLGRGLR-- 611 Query: 832 PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSE---------TYK 882 NK + D + Y + + ++Q + D E ++ Sbjct: 612 KAKNKNYLTVLDFIGNYKRANLIPFLLSTGEYDIEKIQKSKYSVDDFEYPDGCVVDFDFR 671 Query: 883 ITEADGRSF--AEHSHEQLVAKLQRIIGLATFNRDRSE---TIDKQVRRLDELCQDAAGV 937 I + + ++ E + + RI + R E ID + + D Sbjct: 672 IIDIFKKQAESLKNIQEIVYEEFLRIKEMLGKRPSRVEFFKYIDTAIYASMKKYSDPFIN 731 Query: 938 NFNGFASRLREKGPHWSAE--VFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVK 995 F + S L+ E +FN ++ + + ++ + +K Sbjct: 732 VFKDYISFLKINNQLEEGEESLFNTFAHKFIKVVENTMMTKIYKMPLLLAFYNNGNIKLK 791 Query: 996 SLYGDYDTPQDFLEAFDSLVQRSPNAQ 1022 P D EAF NA Sbjct: 792 VG------PDDIYEAFKEFFSNPSNAI 812 >UniRef50_B6H0F8 Pc12g06640 protein n=12 Tax=Leotiomyceta RepID=B6H0F8_PENCW Length = 645 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 123/666 (18%), Positives = 224/666 (33%), Gaps = 95/666 (14%) Query: 435 ADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLI-QSQR 493 ++P + LR YQE+++++V K + +G + + +++ATG GKT ++ R+ + + Sbjct: 35 TESPVPPSIVLRNYQEESIQSVLKYLGEGHRRLGISLATGAGKTVIFTQLISRIPPRDTK 94 Query: 494 FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV 553 + + +V RR L EQA + D I K + + I +A+VQ+L Sbjct: 95 ATKTMIIVHRRELVEQAAK--HCSLAYPDKTVEIEMGKNVAT----GAGDIIIASVQTLA 148 Query: 554 KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-- 611 + + +P + ++VDEAH +YR L HF Sbjct: 149 RGRMYKFDPSA---FKLVLVDEAHH-------------------IVAKSYREALGHFGLN 186 Query: 612 ------AVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGV 665 V + ++AT + G A ID + +D I V Sbjct: 187 EPSPNGPVLVGVSATFSRFDGLKLG----------AAIDHIVYHKDYVDMIGENWLANAV 236 Query: 666 YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ 725 + + + + DF + + + + N + + Sbjct: 237 FTTVKSGANLSKVKKDSF-------GDFALGSLSEAVNTTSTNNITVRAWMASAE--NRK 287 Query: 726 KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKER 785 TLVFCV HA L AAF+ + IT K R Q + F + Sbjct: 288 STLVFCVDIEHA----RRLTAAFRDHGVDARY-----ITASTPKGVRVEQ--LRAFKDQE 336 Query: 786 LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 P +++ L T G DIP+I ++ R RSR L QM GR RL P K + D V Sbjct: 337 FP-VLLNCGLFTEGTDIPNIDCVLLARPTRSRNLLIQMIGRGLRLFP--GKKDCHVIDMV 393 Query: 846 DIYST----LESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVA 901 T ++ + P V + + D + + + S L Sbjct: 394 ASLETGVLSTPTLFGLDPDEVLDHTSVGDMKKNDDDQGSQSEPTPEAAEPYDGSDNDLKL 453 Query: 902 KLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKL 961 + + D ++ +R G + + ++F Sbjct: 454 QFTTYDSIYDLLGDMQS--ERHIRSFSPHNWVRVGDDRYMLTDISGWITIEKADDIFTAH 511 Query: 962 PGFIARLEKLKTDINNLNDAPIFLDIDD--EVVSVKSLYGDYDTPQDFLEAFDSLVQRSP 1019 + + T+ D +V + + ++ ++ + Sbjct: 512 H--VMKFNNPTTEAPQFTRPRKIATGSDLESIVRAADTFASTKFEEHYIASWKPWRRAQA 569 Query: 1020 NAQPALQAVIN---------RPRDLTRKGLVELQEWFDRQH---FEESSLRKAWKETRNE 1067 P ++N +P DLTR ++ F++ ++K K+ R Sbjct: 570 T--PGQIKMLNGARIRDGNIKPEDLTRGQAADMITKLKHGGKKRFKDLEVQKR-KKLRQV 626 Query: 1068 DIAARL 1073 D A L Sbjct: 627 DNMAEL 632 >UniRef50_Q06683 Putative ATP-dependent helicase IRC3 n=6 Tax=Saccharomyces cerevisiae RepID=IRC3_YEAST Length = 689 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 123/691 (17%), Positives = 248/691 (35%), Gaps = 93/691 (13%) Query: 444 GLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKR-----IL 498 LR YQ+DA+ A +I +G + I +++ATG GKT ++ +L Q+ +R L Sbjct: 32 VLRDYQQDAIDACVNSIRQGTKRIGVSLATGGGKTVIFSNLINQLRQNYFKERQGNFKSL 91 Query: 499 FLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQ 558 LV RR L QA + + I+ + + + VA+VQ+L++R Sbjct: 92 ILVHRRELALQATATLKKIFPDLKV-----HIEMGKYDCDIEDSDVIVASVQTLIRRL-- 144 Query: 559 SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALT 618 + I++DEAH ++YR ILDHF A A T Sbjct: 145 --HKYDTNSVNLIIIDEAHHSV-------------------ANSYRSILDHFKA-STAET 182 Query: 619 ATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 P + F R + V+D + + I + E + S + + Sbjct: 183 KIPVIGFSATFERADKRAL--SMVMDKIVYHRGILEMIDDKWLCEAKFTSVKIEAD---- 236 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHAD 738 ++D DF++A + + N + + + TL+F V AH Sbjct: 237 ----LSDVKSTADDFQLAPLSSLMNTKEINEVILKTYLHKKQEKSLKSTLLFGVDKAH-- 290 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 V+ L FK ++ +T D + R +I +F +++ + T Sbjct: 291 --VQSLHKLFKDNGINTDY-----VTSDTKQIER--DNIIQKFKNGE-TEVLMNCGIFTE 340 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMR 858 G D+P+I I+ R +SR L QM GR RL K I D + S + Sbjct: 341 GTDMPNIDCILLCRPTKSRSLLIQMIGRGLRLHHS--KDHCHIIDFIGASS-------VG 391 Query: 859 PVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSE 918 V + +++ E D+ + G A+ +++ +L+ + + Sbjct: 392 VVSAPTLLGIRSDDIEFDDATVEDLKAIQGEIIAKQ--QKIDERLRALFQTDEAAMENVT 449 Query: 919 TIDKQVRRLDELCQDAAGV-NFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINN 977 + + + +F+ F + + + S + F++ + +E L Sbjct: 450 ERNSVADWIHSANSVDLTLCSFDSFRNFTQSNNSYPSGKEFDEASEAVKEMELLMNSQYP 509 Query: 978 LNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTR 1037 V + +G ++ L + + + L+ P +T Sbjct: 510 W------------VKFASNAWGLPLKGKNHLRIYKEKSEDKLSMVYHLKMYRQLPCFITN 557 Query: 1038 KGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHAL 1097 K ++ + ++++L + ++I + G ++ + + Sbjct: 558 KY----ADYVPKSIIKDANLWNVMSKV------EKIINTLNSDLEGQTMQY--QAISSKY 605 Query: 1098 TRIKGENDWSSEQLSWLDRLAQALKEKVVLD 1128 ++ + +S+Q ++ R + + + D Sbjct: 606 SKWRQTVP-TSKQRDFVFRKLKKVYGESSKD 635 >UniRef50_A4QW28 Putative uncharacterized protein n=2 Tax=Sordariomycetes RepID=A4QW28_MAGGR Length = 643 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 138/693 (19%), Positives = 233/693 (33%), Gaps = 138/693 (19%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 + LR YQE+ ++AV ++ G + I KT T + L L Sbjct: 43 ISLRSYQEECIQAVLSSLENGHKRIDRVPPIS--KTAT---------------QTLILAH 85 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 RR L EQA T D I + I VA+VQS++ Sbjct: 86 RRELVEQAAR--HCTNAYPDKTVEIE----MGSTHSSGLADITVASVQSIISG--DRMAK 137 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA 622 +R+ ++VDEAH +T S+ + ++AT + Sbjct: 138 FDASRFKLVLVDEAHHIVAPGYLKTLAHFGLASKQQT-----------SPHLVGVSATFS 186 Query: 623 LHTVQIFG----EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 G E VY Y + D +L D + Sbjct: 187 RFDGLRLGAAIDEIVYHKDYVDMIGDKWLSDVLF---------------------TTVES 225 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHAD 738 ++ + DF ++ +R + N G + TLVFCV AH + Sbjct: 226 SADISRARTGANADFLPSELSRAVNTNEVNEITVRSWMA--KAPGRKSTLVFCVDLAHVN 283 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 + ++ R +TGD K R + F + P ++V + T Sbjct: 284 GLTQKFREF---------GIDARFVTGDTHKVERS--ERLEEFRAGKFP-VLVNCGVFTE 331 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMR 858 G DIP+I +V R +SR L QM GR RL P K + +I D V S+LE+ Sbjct: 332 GTDIPNIDCVVLARPTKSRNLLVQMIGRGMRLHP--GKKNCQIIDMV---SSLETGIVTT 386 Query: 859 PVVVRPKVELQTLVNEITDSETYKITE---ADGRSFAEHSHEQLVAKLQRIIGLATFNRD 915 P + ++ LVN T + + E A+G + K + + +++ Sbjct: 387 PTLF--GLDPGELVNNATVDQLRDLQEQKAAEGTKTGTANDLGPAHKKPKSVNISSLAFT 444 Query: 916 RSETI---------DKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIA 966 E++ +K +R L E C G + R GP G Sbjct: 445 EYESVLDLISDTSGEKHIRSLSEYCWVEIGRD------RYVLSGPG----------GTFL 488 Query: 967 RLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEA--F-------DSLVQR 1017 R+EKL + P F ++ + V + P++ L+A F D Sbjct: 489 RIEKLAAEAEGF---PKFRAVEVRALPVGLSKSPFAAPREILKATTFADAVHGCDKYASE 545 Query: 1018 SPNAQPALQAVINRPRDLT-----RKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAAR 1072 + + R R+ + + +++ +++ E+ + K A Sbjct: 546 NFPHI--FISRKQRWRNGPATAGQVEFINKIRGQ-NQEPLTETDITKG--------AATD 594 Query: 1073 LIGHIRRAAVGDALKPFEERVDHALTRIKGEND 1105 +I I+ A G + ER ++ E + Sbjct: 595 MITKIKHGARGRFAEIGAERRRQEKRKLGSEKE 627 >UniRef50_D0DSQ0 Phage DEAD box family helicase n=2 Tax=Lactobacillus fermentum RepID=D0DSQ0_LACFE Length = 975 Score = 262 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 117/591 (19%), Positives = 218/591 (36%), Gaps = 81/591 (13%) Query: 379 STNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP 438 NG R + W RD + +S+ + +R + + +D P Sbjct: 154 LNNGEITRQIKENFEAEW----RDAKPLSEDWLDGYRKAYQADHQVNRAVHDYVTPSDEP 209 Query: 439 GMSE-LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRI 497 G ++ + Q A+ +E + G+ L+ ATGTGKT + ++ + KR+ Sbjct: 210 GKAQQVKPNQMQTAALNEIEALRLAGKDRGLVVSATGTGKTYLGAFDV----RAAKPKRM 265 Query: 498 LFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 LFL R + +++ +F++ + GD N G DK + K A+VQ+L + Sbjct: 266 LFLAHREQILQKSCQSFKNI-LGGDPDNFGLYTGGARDK----NAKYLFASVQTLSRE-- 318 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIA 616 + +D I++DE H +Y+RI+D+F + Sbjct: 319 EHLHRFSPDDFDYILIDEVHHAG-------------------AESYQRIMDYFTPKFFLG 359 Query: 617 LTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVER 675 +TATP IF Y Y + ++ P + + E + Sbjct: 360 MTATPERSDDFNIFNLFHYNVAYEIRLQQALELNMLAPFHYVGLTDYAFADQYEEEVDQY 419 Query: 676 ISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNA 735 + + ++ + E+ L + + Y LVFC + A Sbjct: 420 RNRKQGSKPSRKQEQRAVEL------LTSKERVNYILEQTDYYGYSGPVLHGLVFCSSVA 473 Query: 736 HADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 A+ + AA ++G + D R+ + + L ++TVD+ Sbjct: 474 EAEALARAFTAA---------GHPAKALSGADNGDRRRQ---VVHELENGLIEYIITVDI 521 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD 855 G+DIP + +VFLR +S I+Y Q GR R P K ++ D + Y + Sbjct: 522 FNEGIDIPCVNQVVFLRNTQSAIVYVQQLGRGLRKYP--GKEYVEVLDFIGNYKNNYMIP 579 Query: 856 TM-------------RPVVVRPKVELQTL-VNEITDSETYKIT---EADGRSFAEHSHEQ 898 V + P V L T+ +E+ Y+ + D + +++ Sbjct: 580 IALTGDNSYSKDQARDTVDIEPTVGLSTIAFDEVAKERIYESLSKVKLDRLANLRDAYQN 639 Query: 899 LVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREK 949 + ++ RI L+ F + +++D Q+ L N+N F ++ E Sbjct: 640 IKRRVGRIPMLSDF--LKMDSVDPQI-----LATVVKPRNYNRFLLKMGEP 683 >UniRef50_B6QJS8 DEAD/DEAH box helicase, putative n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QJS8_PENMQ Length = 666 Score = 261 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 114/642 (17%), Positives = 226/642 (35%), Gaps = 85/642 (13%) Query: 385 YRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELG 444 + ++++ +W +++ W P L M + A++ ++ Sbjct: 6 FLLRRQSRNLLWSWPYNAP--WQQSVSSWF-PRRLPSMTVLARYASTK--AEDIIPLKIQ 60 Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLI-QSQRFKRILFLVDR 503 LR YQE+++++V + + KG + L++ATG+GKT ++ R+ ++ R + L + R Sbjct: 61 LRDYQEESIQSVIENLGKGHNRLGLSLATGSGKTVIFTQLIHRIPPRNGRADQTLIIAHR 120 Query: 504 RSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM 563 + L EQA D I + + I VA+++SL + E Sbjct: 121 KELVEQAAR--HCRLAYPDKTVEIE----MGATKASGAADITVASIRSLASK--GRIEKF 172 Query: 564 PVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD--------AVKI 615 + + ++VDEAH YR+ L++F + Sbjct: 173 DPSYFKLVLVDEAHH-------------------IVAPQYRQALEYFGLTEPSNNAPALV 213 Query: 616 ALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVER 675 ++AT G +VID + +D I + + ++ + V+ Sbjct: 214 GVSATFFRFDGLKLG----------SVIDHIVYHKDYIDMIGEKWLSDAIFTTVKTNVD- 262 Query: 676 ISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNA 735 + + DF + + N + + + TLVFCV Sbjct: 263 ------LSRVAKDSSGDFATRALSEAVNTATVNDVTVRSWLTHA--SDRRSTLVFCVDIE 314 Query: 736 HADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 H V +L AF+ + IT + + R + + F K P +++ L Sbjct: 315 H----VRQLTEAFRDNGIDARY-----ITANTPRQTRNEE--LEAFKKGEYP-VLLNCGL 362 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST-LESV 854 T G DIP+I +V R RS+ L QM GR RL P+ K + I D V +T + S Sbjct: 363 FTEGTDIPNIDCVVLARPTRSKSLLIQMIGRGLRLHPQ--KENCHIIDMVSTLNTGIMST 420 Query: 855 DTMRPVVVRPKVELQTL--VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATF 912 T+ + + Q++ + + + E + D + + + Sbjct: 421 PTLFGLDPDEALNTQSVKDIQKRKEHEDFDPDIPDAGYIRPLGDDDVDVTFTTYDSVFDL 480 Query: 913 NRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLK 972 D E +D+ +R + + A + S + + P + ++K + Sbjct: 481 LND--ERVDRHIRSISRYSWVRVNTDRYILAEKSGWMTIEKSDQDIDG-PWVVELVQKYE 537 Query: 973 TDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSL 1014 ++ P + + + + F Sbjct: 538 AATGIVHTRPRVIARAPDFEQAVRSADTFAS-----TNFKDF 574 >UniRef50_Q6C2M8 YALI0F06534p n=1 Tax=Yarrowia lipolytica RepID=Q6C2M8_YARLI Length = 695 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 120/621 (19%), Positives = 211/621 (33%), Gaps = 92/621 (14%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ++ + A A+ G++ I +++ATG GKT ++ ++ ++L L R+ Sbjct: 29 LRKYQKECISACLDALNAGKRRIAVSLATGGGKTVIFANLLNQIAAKNTGNKVLILTHRK 88 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L QA +R N D I + + S + VA VQ+L + L+ +P Sbjct: 89 ELATQAQNQI--SRFNPDLKVEIE----MGTTVADPSADVVVAGVQTLQGKRLEQLDPTD 142 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-------IAL 617 + I++DEAH +Y I+ HF A K I Sbjct: 143 ---FKAIIIDEAHHAAS-------------------QSYLNIIQHFKASKAKSDVAVIGF 180 Query: 618 TATPALHT----VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQV 673 TAT + F VY ++ + DG+L I + E Sbjct: 181 TATLFRTDTKSLTKAFDHVVYDLSFMDMINDGWLSSVKFSTVISMADLTE---------- 230 Query: 674 ERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVT 733 + DF+ + ++ + N V N G + T+VFCV Sbjct: 231 -----------VEIGAAGDFKTSSLSKVVNTDRMNSLVFRTWQNMTAKHGYKSTIVFCVD 279 Query: 734 NAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTV 793 H +VE F+ + E +TG R Q +I F +P ++ Sbjct: 280 VQHVRDLVE----LFRSQGINAEG-----VTGTTKPKTR--QAIIDEFKSGDIP-VLFNC 327 Query: 794 DLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLES 853 + T G DIP+I ++ R +S+ L QM GR RL P K + D V Sbjct: 328 GVFTEGTDIPNIDLVILNRPTKSKGLMMQMIGRGLRLHP--GKDHTAVVDLVGTVP--AG 383 Query: 854 VDTMRPVVVRP------KVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII 907 + T ++ P + + L+ E ++ E S + + ++Q + Sbjct: 384 MVTAPSLLGLPSGHHCDRASFEELLEEKKKTKDPDHVEITTFSSLQDFLD-FGREIQDVE 442 Query: 908 GLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIAR 967 + D + L ++ ++ + +R S + + A Sbjct: 443 VEEGEYGEGFANPDNWMH----LTPNSWALDKGSRGTCVRLTIIPDSDSMIDGESKVKAS 498 Query: 968 LEKLKTDINNLNDAPIFLDIDDEVVS--VKSLYGDYDTPQDFLEAFDSLVQRSPNAQPAL 1025 L + + F ++ S +D + LE + A Sbjct: 499 LVTMGVPVFGDGKRWNFFGKTGTLMEKVFDSKKDAFDAAAETLEN-SKYLPEMR--IWAQ 555 Query: 1026 QAVINRPRDLTRKGLVELQEW 1046 + D +K L L + Sbjct: 556 KLRSRPATDSQKKFLKRLVDK 576 >UniRef50_Q6CMW9 KLLA0E17095p n=2 Tax=cellular organisms RepID=Q6CMW9_KLULA Length = 690 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 100/524 (19%), Positives = 186/524 (35%), Gaps = 72/524 (13%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRL--IQSQRFKRILFLVD 502 LR YQ+D + A+ +G+ I +++ATG GKT ++ R + + + L LV Sbjct: 53 LRDYQQDCINKCVDAVTQGKMRIGVSLATGGGKTVIFSNLLDRFRSLGAHSSRAALILVH 112 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 RR L QA + N ++ L E + + +V ++V+R E Sbjct: 113 RRELAMQAASTISKFMPD---LNVQMEMGKLHANLEE--ADVVIGSVLTMVRRL----EE 163 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA 622 P D IV+DEAH +Y ++L HF+A A T P Sbjct: 164 YPPDSIDLIVIDEAHHAV-------------------ADSYVKVLAHFNADTPA-TRVPV 203 Query: 623 LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEV 682 + F R +AV+D + + I EG + + V+ Sbjct: 204 IGFSATFERADKRAL--SAVMDEIIYHKGILEMIDENWLCEGKFTTVDVGVD-------- 253 Query: 683 INDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVE 742 ++ + DF++ ++ + N V N + + TL+F V AH + + Sbjct: 254 LSKVKSVNSDFQLEGLSKVMNTKEINEIVLNTYLHKKKLHNLKSTLLFAVDVAHCKTLFQ 313 Query: 743 EL-RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVD 801 A +Y +TG R ++++ F ++ +++ + T G D Sbjct: 314 TFQNAGINAQY----------VTGKTRTGER--DSIVSDFKNGKI-QVLMNCGIFTEGTD 360 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYS-------TLESV 854 IP++ ++ R +SR L QM GR R K +I D V TL + Sbjct: 361 IPNVDCVLLCRPTKSRSLLVQMIGRGLRKHHS--KEHCQIIDFVSSSKVGVISVPTLAGI 418 Query: 855 DTMRPVVVRPKVE-LQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFN 913 D + ++ + ++ EI + + E + + + Sbjct: 419 DDYDANLDEMAMDEINSIRQEIEEKRLQQEMIQRETEAKEQEQKNHYRNIV-------LD 471 Query: 914 RDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEV 957 D E C+ +++ + +E ++ Sbjct: 472 SDSIELTLTNFEDFKSFCESMGTTDYSKLSPAAKEARLLADSKF 515 >UniRef50_B2AZI6 Predicted CDS Pa_3_4550 n=6 Tax=Leotiomyceta RepID=B2AZI6_PODAN Length = 678 Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 122/626 (19%), Positives = 216/626 (34%), Gaps = 84/626 (13%) Query: 398 RDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVE 457 R ++ + + W + + + LR YQE+ ++AV Sbjct: 11 RLKESPKDPTTSFQLWPS---------RPFTTTTTRLSQESPPTPIQLRAYQEECIQAVL 61 Query: 458 KAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQR-FKRILFLVDRRSLGEQALGAFED 516 +I +G + + +++ATG GKT ++ R+ R L L RR L EQA + Sbjct: 62 TSITQGHKRLGISLATGAGKTVIFTHLIDRVTPPNPQATRTLILAHRRELVEQAARHCQS 121 Query: 517 TRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEA 576 N + +++ I VA++QS++ + + Y ++VDEA Sbjct: 122 AYPNKTVEVELGNLQ------ATGFADITVASMQSILSK--DRLLKFDPSNYKLVLVDEA 173 Query: 577 HRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD--------AVKIALTATPALHTVQI 628 H Y +IL+H + + ++AT + Sbjct: 174 HH-------------------IVAPGYLKILEHMNLRQKQPDSPTLVGVSATFSRSDGLK 214 Query: 629 FGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLE 688 G A ID + +D I + E V+ + + + + + T E Sbjct: 215 LG----------AAIDEIVYHKDYIDMIADKWLSEVVFTTVESRADLSGVRAKGAGGTGE 264 Query: 689 DDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAF 748 FE A +R + P N V P Q TLVFCV +H + E R Sbjct: 265 ----FETASLSRAVNSPELNDIVVRAWFAKAAPPKRQSTLVFCVDLSHVAALTERFR--- 317 Query: 749 KKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNI 808 H I D A++ + +F K+ P +++ + T G DIP+I + Sbjct: 318 --------HHGIDARYVFGDTPAKERAETLEKFKKKEFP-VLLNCGVFTEGTDIPNIDCV 368 Query: 809 VFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVEL 868 V R RSR L QM GR RL K + + D V ++L+ P + ++ Sbjct: 369 VLARPTRSRNLLIQMIGRGMRLHE--GKENCHVIDMV---ASLDVGIITTPTLF--GLDP 421 Query: 869 QTLVNEITDSETYKITEADG-RSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRL 927 LV E T E + G + E+ ++K + + + T V L Sbjct: 422 DELVAEKTGGELLALAREGGEKKETAEGREKRMSKAAKKARPTGESYKVAFTEYDSVFDL 481 Query: 928 DELCQDAA---GVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIF 984 ++ N + K + +L +A + K ++ Sbjct: 482 ISDAAGEKHIRAISQNAWVQVNPNKYVLSTDRDVMRLEKEVAVPPRGKDGEEEGERKTMW 541 Query: 985 LDIDDEVVSVKSLYGDYDTPQDFLEA 1010 +S + + P++ L Sbjct: 542 KGYVMRALS--NGKSPWAAPREILRT 565 >UniRef50_Q5KCW6 DEAD box family helicase, putative n=1 Tax=Filobasidiella neoformans RepID=Q5KCW6_CRYNE Length = 706 Score = 259 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 99/506 (19%), Positives = 183/506 (36%), Gaps = 65/506 (12%) Query: 425 SEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAM 484 +P + + + LR YQE A+ A A+ G + + ++ TG+GKT +++ Sbjct: 46 HQPPSDHAGPNNTTRNQNITLRSYQEAAISACLDALQSGSRRLGVSSPTGSGKTTIFLSL 105 Query: 485 MFRL----------IQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLT 534 + R+ + L +V+ L EQ + E R+ GD + + + Sbjct: 106 IPRVPFYASRGNDSHPRDGKGQTLIIVNSVELAEQTQKSAE--RLLGDEWTIEIEQ---S 160 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 + + +AT Q+L +++ ++VDEAH Sbjct: 161 KRVASGLADVTIATYQTLNNP--DRLSKFDPSKFKLVIVDEAHHS--------------- 203 Query: 595 SQLDYVSAYRRILDHFDA-VKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPP 653 +Y R+L +F+ VKI + + F P+ ++ + D + Sbjct: 204 ----AAPSYLRLLHYFNEDVKIPKSPQAPSPHLHGFKVPIIGFSATFSRADQHSLHSAFE 259 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDD-QDFEVADFNRGLVIPAFNRAVC 712 + R+ ++ + + + ++ D +E DF+ A R + N + Sbjct: 260 EIVFHRDMKDMLSEKHLAPAKLTIVKADLELDEVETSSGDFKNAALARKVNTTEINELIV 319 Query: 713 NELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDAR 772 + + + TLVFCV H + + R+A I + + Sbjct: 320 RTYLH--RASERRSTLVFCVDLEHVSALTQTFRSA-----------GIDARSVSSKSKPE 366 Query: 773 KVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 + I F K P +++ ++LT G DIP I I+ R +SR L QM GR RL P Sbjct: 367 MRKATIAAFGKGEFP-VLINCEVLTEGTDIPQIDCILLARPTQSRNLLVQMVGRGLRLSP 425 Query: 833 EVNKTSFKIFDCVDIYSTLE-----------SVDTMRPVV--VRPKVELQTLVNEITDSE 879 E KT I D VD + S+D M + + V I Sbjct: 426 ESGKTDCHIIDLVDSVANANGLIVTPTLLGLSLDEMDVEDHGRESTEKAKPQVPPIAPDY 485 Query: 880 TYKITEADGRSFAEHSHEQLVAKLQR 905 + D + + ++ K+ + Sbjct: 486 DITYLDQDDPFHVDVFAQPVIQKVSK 511 >UniRef50_C5DW03 ZYRO0D10802p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DW03_ZYGRO Length = 650 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 95/411 (23%), Positives = 149/411 (36%), Gaps = 62/411 (15%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 + LR YQ+ + +++ ++ I +++ATG GKT ++ +L Q R L LV Sbjct: 22 VQLRDYQQHVIDKCLESLKDNKRRIGVSLATGGGKTVIFANLIKQLSQQTP-HRALVLVH 80 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 RR L QA + I G + VA+VQSL++R + Sbjct: 81 RRELVLQAAQTIKKFMP----LARIQIEMGKYVCQDVKDCDVIVASVQSLIRRL----DN 132 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF--DAVKIALTAT 620 D ++VDEAH ++Y RILDHF D + +AT Sbjct: 133 YESTDIDLVIVDEAHHAV-------------------ANSYLRILDHFKKDIPVVGFSAT 173 Query: 621 PALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG 680 + V+D + + I EG + + + S + Sbjct: 174 FERADHKALST----------VMDEIVYHKGILEMINDNWLCEGKFTTVKIDADLNSVER 223 Query: 681 EVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD--PTGSQKTLVFCVTNAHAD 738 +D DF++ +R + IP N V + P G TL+F V H Sbjct: 224 ASGSD------DFKLDQLSRVMNIPEINGLVLKTYLHKSKEQPGGFNSTLLFAVDIKHVK 277 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 + + I ++ AR+ +I F K + +++ + T Sbjct: 278 ALHHLFVSY-----------GIKAECVTSETKARERDQIIDNFKKGDV-KVLINCGIFTE 325 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYS 849 G D+P I I+ R RSR L QM GR RL K I D V Sbjct: 326 GTDMPGIDCILLCRPTRSRSLLVQMIGRGLRLHHS--KDFCHIIDFVGASD 374 >UniRef50_C7N5J4 DNA/RNA helicase, superfamily II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5J4_SLAHD Length = 974 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 114/674 (16%), Positives = 238/674 (35%), Gaps = 95/674 (14%) Query: 336 NGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGI 395 NG + V + + Q + + + NG+ + + + Sbjct: 119 NGSFHAKGYLFKHGELKKLIVGSSNLTDTALTSNQEWNLSVTSAENGKLAKDYQLEFNRL 178 Query: 396 WYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRA 455 W + S +W E E ++ + F P + Q +A+ Sbjct: 179 WNHEAT-----SVLTDDWL--AEYAEHYDKYRKQAVRSFYYTPQEKMIRPNVMQTEALAG 231 Query: 456 VEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFE 515 + + +G+ LL ATGTGKT + + ++ K++L++V R + +++ +F+ Sbjct: 232 LAQLRDEGKNRALLISATGTGKTYLSAFDV----KAFSPKKVLYVVHRNKIARKSMESFQ 287 Query: 516 DTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDE 575 + + + + + + ATVQ+L KR ++ E +D I+VDE Sbjct: 288 NVLSSKE-----YSFGMFSGSEKTTDARCIFATVQTLAKR--ENLEKFAKDEFDYIIVDE 340 Query: 576 AHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPAL-HTVQIFGEPV 633 HR ++Y R +D+F+A + ++ATP I+ Sbjct: 341 VHRAG-------------------ANSYLRFMDYFEAEFILGMSATPERTDDFDIYELFD 381 Query: 634 YRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDF 693 + Y + D + P V + GE++ + Sbjct: 382 HNIAYEIRLNDALEYNLLVPFHYFG--------------VAEVCIDGELLEED------- 420 Query: 694 EVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYP 753 A FNR LV R V N + Y LVFC A+ + ++ Sbjct: 421 --ASFNR-LVSDERVRHVLNAINKYGYSGERVHGLVFCSRIEEAEELSQKFNNL------ 471 Query: 754 QLEHDAIIKITGDADKDARK--VQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFL 811 + ++G + R ++ + + E + + TVD+ G+DIP++ +V L Sbjct: 472 ---GYKTVALSGSTSEALRDDAIERLEQDEDDENALDYIFTVDIFNEGIDIPAVNQVVML 528 Query: 812 RKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVE-LQT 870 R +S I++ Q GR R K + D + Y + + P+ + + + Sbjct: 529 RPTQSAIVFVQQLGRGLRTSE--GKEYVVVIDFIGNYQK----NYLIPIALFGERSGSKE 582 Query: 871 LVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDEL 930 + ++ + + +I + SF S E+++ + R N + I + L Sbjct: 583 KLRKLISNGSCEIPGSSTVSFDRISTERIIDNINR------TNLSKLSMIRDAYKELRA- 635 Query: 931 CQDAAGVNFNGFASR-LREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDD 989 + + F + + + F+ R EK ++ ++++ + Sbjct: 636 -KIGSIPTLQDFLDHGSIDPSIIFENDTVRTYHQFLVRYEKEYNEVFSIDEEKLM----- 689 Query: 990 EVVSVKSLYGDYDT 1003 E++ + G + Sbjct: 690 ELLCREIADGKREA 703 >UniRef50_Q759H6 ADR302Wp n=1 Tax=Eremothecium gossypii RepID=Q759H6_ASHGO Length = 691 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 90/431 (20%), Positives = 164/431 (38%), Gaps = 55/431 (12%) Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 LG + A + L LR YQ+ + + I G++ I +++ATG GKT Sbjct: 25 RALGRLFDGLSDQQAPYTAAAALPLREYQQACIDECLRCIADGRRRIGVSLATGGGKTVV 84 Query: 481 AIAMMFRLIQSQRFKRI--LFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP 538 ++ L Q Q+ +R L LV RR L +QA + + ++ + + Sbjct: 85 FANLLNALRQEQQGRRFRALVLVHRRELAQQATRTLKRCAPELNV-----QVEMASQRAN 139 Query: 539 EDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLD 598 ++ + VA+V SL++R + P D I++DEAH Sbjct: 140 LETADVVVASVLSLIRRL----DQYPRGSIDAIIIDEAHHA------------------- 176 Query: 599 YVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIIT 658 +Y R+L+H A T P + F E R A +D + + I Sbjct: 177 AAESYLRVLEHLGAG-TKDTKVPVIGFSATF-ERADRKALSRA-MDEIVFHKGILEMIDE 233 Query: 659 RNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNY 718 + EG + + + ++ DF+++ ++ + NR V N + Sbjct: 234 KWLCEGRFTTVDVDAD--------LDGVEMSGSDFQLSSLSQVMNTEQVNRIVLNTYLHK 285 Query: 719 LDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMI 778 + L+F + +H + + +A +E + T ++D+ ++ Sbjct: 286 RREHKLKSALLFGIDVSHVKSLCKLFQA------NGIEAQYVTAKTRPTERDS-----IV 334 Query: 779 TRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTS 838 F + + +++ + T G DIP+I ++ R RSR L QM GR R K Sbjct: 335 EDFRRGDI-EVLMNCGIFTEGTDIPNIDCLLLCRPTRSRTLLVQMIGRGLRQHHS--KDH 391 Query: 839 FKIFDCVDIYS 849 + D V Sbjct: 392 CHVIDFVSACK 402 >UniRef50_B1IDR5 Restriction/helicase domain protein n=19 Tax=cellular organisms RepID=B1IDR5_CLOBK Length = 1002 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 110/596 (18%), Positives = 213/596 (35%), Gaps = 105/596 (17%) Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 + ++ + + + +L Q +A++ +EK GQ + LL ATGTG Sbjct: 228 QTYEDIYRKQVEFTRKSKVPRLAQYKLKPNKMQVEAIQGLEKLRENGQDKGLLISATGTG 287 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK 536 KT + +++ KR LF+V R + +QAL +F + F + L+ Sbjct: 288 KTYLSAF----ELRNYNPKRALFIVHREQIAKQALNSFRNV------FGDTRSMGILSGT 337 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 + T+Q+L K + + +D I++DE H+ Sbjct: 338 SKDVDKDFIFCTIQTLSK--DEVLQSFGKNEFDYIIIDEVHKAG---------------- 379 Query: 597 LDYVSAYRRILDHFDA-VKIALTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPI 654 ++Y++I+++F+ + +TATP IF Y Y + D P Sbjct: 380 ---ANSYQKIVNYFNPKFLLGMTATPERSDDFDIFKMFNYNIAYEIRLQRALEEDLLCPF 436 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 V ++ G L+D DF + LV + + ++ Sbjct: 437 HYFG--------------VSDVTIDGI----ELDDKTDF------KYLVAEERVKHIIDK 472 Query: 715 LTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV 774 + Y K L+FC A + + + + +TG++ ++ R Sbjct: 473 INFYGYCGERVKGLIFCSDKKEAKELSDIFNT---------KGYKTVGLTGESSQEER-- 521 Query: 775 QTMITRFNKERLP---NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 + I R ++ + + TVD+ GVDIPS+ +V LR +S I++ Q GR R Sbjct: 522 EKAIERLEQDETLNSLDYIFTVDIFNEGVDIPSVNQVVMLRPTKSSIIFVQQLGRGLR-- 579 Query: 832 PEVNKTSFKIFDCVDIYSTL--------------------ESVDTMRPVVVRPKVELQTL 871 K I D V Y++ ++ R + + + Sbjct: 580 KNKFKEYVVIIDFVGNYNSNFLIPIALSGDRTFNKDTIRKYVMEGTRVIPGCSTINFDEI 639 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELC 931 + E+ + + S+ L K+ RI L+ F D+ ++ID Sbjct: 640 SKKKIF-ESIDSANFNNIKLIKESYFNLKQKIGRIPSLSDF--DKFDSIDPLR------- 689 Query: 932 QDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDI 987 + + L++ ++ E+ + FI + K ++ + +I Sbjct: 690 --IFATKLGSYYNFLKKYDKEYTVELNDLQALFIEFISKKLASGKRPHELIMIKNI 743 >UniRef50_B8MIT3 DEAD/DEAH box helicase, putative n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MIT3_TALSN Length = 667 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 101/561 (18%), Positives = 192/561 (34%), Gaps = 86/561 (15%) Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 P L ++ + ++ ++ LR YQE+++++V + + KG + L++ATG+ Sbjct: 34 PRTLPLLI--TISRYASTTTEDIVPPKIKLRDYQEESIQSVLEHLEKGHNRLGLSLATGS 91 Query: 476 GKTRTAIAMMFRLI-QSQRFKRILFLVDRRSLGEQALG----AFEDTRINGDTFNSIFDI 530 GKT ++ R+ ++ + L + R+ L EQA A+ D I + Sbjct: 92 GKTVIFTQLIGRVPPRNGGANQTLIIAHRKELVEQAARHCRLAYPDKSIEIE-------- 143 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 + + I VA+++SL + E + + ++VDEAH Sbjct: 144 --MGANKASGAADITVASIRSLSSK--DRIEKFDPSLFKLVLVDEAHH------------ 187 Query: 591 LQFRSQLDYVSAYRRILDHFD--------AVKIALTATPALHTVQIFGEPVYRYTYRTAV 642 YR+ L +F V + ++AT G + Sbjct: 188 -------IVAPQYRQALSYFSLTKPSNNAPVLVGVSATFFRFDGLKLGSAI--------- 231 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 D + +D I + + ++ + V+ + DF + + Sbjct: 232 -DHIVYHKDYIDMIGEKWLSDAIFTTVKTHVDLSRVAR-------DSSGDFATRALSEAV 283 Query: 703 VIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 N + + + TLVFCV H + E R Sbjct: 284 NTATVNDVTVRSWLTHA--SDRRSTLVFCVDIEHVHQLTEAFRD---------NGIDARY 332 Query: 763 ITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 IT + + R + + F + P +++ L T G DIP+I +V R RS+ L Q Sbjct: 333 ITANTPRQTRNEE--LEAFKRGEYP-VLLNCGLFTEGTDIPNIDCVVLARPTRSKSLLIQ 389 Query: 823 MKGRATRLCPEVNKTSFKIFDCVDIYST----LESVDTMRPVVVRPKVELQTLVNEITDS 878 M GR RL PE K + I D V +T ++ + P +Q + + + Sbjct: 390 MIGRGLRLHPE--KENCHIIDMVSTLNTGIMSTPTLFGLDPDEALNTQSVQEIRKQ-KEQ 446 Query: 879 ETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVN 938 E D +++ + D E +D+ +R + + Sbjct: 447 EDISSPIPDVSYVRPLREDEVDVTFTTYDSVFDLLND--ERVDRHIRSISRYAWVRVNAD 504 Query: 939 FNGFASRLREKGPHWSAEVFN 959 A + + + Sbjct: 505 RYILADKSGWMTIEKGEQNID 525 >UniRef50_C6R8F6 Type III restriction enzyme, res subunit n=5 Tax=Corynebacterium RepID=C6R8F6_9CORY Length = 1040 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 115/619 (18%), Positives = 216/619 (34%), Gaps = 80/619 (12%) Query: 442 ELGLRYYQEDAVRAVEKAIV-KGQQEILLAMATGTGKTRTAIAMMFRLIQS-QRFKRILF 499 E+ YQE+ + A+ K + LL ATGTGKT A L + +R R+LF Sbjct: 315 EVTPYPYQEEMLEALRSEREVKDRHRNLLVAATGTGKTVVAALDYRNLCEQWKRRPRLLF 374 Query: 500 LVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS 559 + R+ + +QA F++ + D F + L D A+VQSL LQ+ Sbjct: 375 VAHRKEILQQARRTFQEVLKDAD-FGEL-----LVDGAEPRRWDYVFASVQSLSASRLQN 428 Query: 560 DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV-KIALT 618 + +D +V+DE H Y+ +LDH + LT Sbjct: 429 ---LNSKHFDVVVIDEFHHAQ-------------------APTYKALLDHLQPQELLGLT 466 Query: 619 ATPALHTVQIFGEPV-YRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 ATP + + YR + + D + P+ ++ G + ++ Sbjct: 467 ATPERGDGENVQKYFDYRVAHELRLWDALRLQLLVPMHYYG--------IADGTDLSSLT 518 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHA 737 E + E+ +F + + R + NEL + K + FCVT AHA Sbjct: 519 WSREKKDYNTEELSEFYIKAGEK------RTRFIVNELNRRIFDLSDMKAIGFCVTIAHA 572 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 + + + + H I +D A + I + ++ +VD+ Sbjct: 573 EYMARQFQ-----------HFGIPARAVTSDLTATERAQAIKDLENGDV-KVLFSVDIFN 620 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD-IYSTLESVDT 856 GVDIP++ ++ LR +S +++ Q GR RL P K S I D + + + Sbjct: 621 EGVDIPAVNTLLLLRPTQSPVVFLQQLGRGLRLSP--GKDSCVILDFIGQQHVDFDFERK 678 Query: 857 MRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIG--LATFNR 914 + + L + + + +S E + + + A + Sbjct: 679 FHALTRKRGKRLAEEIEQGFPTAPPGSHIQFDQSTTEQVLRNVKKVSRNSLRKVRALLSE 738 Query: 915 DRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKG-----PHWSAEVFNKLPGFIARLE 969 R+ + + + + +D + + LRE+G + + Sbjct: 739 IRTTNLKEFLEDSNLQLEDIYRPSKYSWTRLLREEGLLQQNTDETESFLLNRIRVFLHVN 798 Query: 970 KLKTDINNLNDAPIFLDI------DDEVVSVKSLYGDYDT-----PQDFLEAFDSLVQRS 1018 L D+ + + G + P + +A +++++ Sbjct: 799 DPHRIDAYLRILSTPSLHYADMGPSDQAFTRMLVLGFWANSNSPHPGSY-DAALTILRQH 857 Query: 1019 PNAQPALQAVINRPRDLTR 1037 P L+ V+ D +R Sbjct: 858 PQVAWELEQVMQLSSDSSR 876 >UniRef50_B3CKZ8 Putative carboxylic ester hydrolase n=1 Tax=Propionibacterium freudenreichii subsp. shermanii RepID=B3CKZ8_PROFR Length = 1054 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 110/561 (19%), Positives = 197/561 (35%), Gaps = 80/561 (14%) Query: 442 ELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK-RILFL 500 ++ + +Q + + + L+ ATGTGKT A RL + +LF+ Sbjct: 308 DIQPQPHQRIMLDDLAHERQQDFHRNLVVAATGTGKTVLAALDYLRLCGDKPGSLSLLFV 367 Query: 501 VDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD 560 R+ + EQA + +N F + L + A+VQSL + L + Sbjct: 368 AHRKEILEQARSTYAHV-LNDANFGEL-----LVGGEHPTEHRHVFASVQSLSRMNLDAL 421 Query: 561 EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV-KIALTA 619 +P +D +V+DE H + YRRILDHF + LTA Sbjct: 422 DPTA---FDVMVIDEFHHA-------------------EAATYRRILDHFQPRELLGLTA 459 Query: 620 TPAL----HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVER 675 TP + FG+ + +DG D P + + K Sbjct: 460 TPERADGVNVASFFGDRIASELRLWDALDG---DLLAPFHYFVQWDDTDLRGVKAS---- 512 Query: 676 ISPQGEVINDTLEDDQDFEVADFNRGLVIPA-FNRAVCNELTNYLDPTGSQKTLVFCVTN 734 +++ + +R +R V + + + K L FCV+ Sbjct: 513 --------------GGEYQAGELSRLYTDNDGRSRLVLAAMRHRILDPTRMKALAFCVSV 558 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 HA + + L A + ++G + ++ R + I + RL + TVD Sbjct: 559 EHAHYMADVLSQA---------GVPSVALSGQSSREIR--EAAIRDLREGRLA-CLCTVD 606 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD-IYSTLES 853 L G+DIPSI ++ LR +S ++ Q GR R P K+ + D V Sbjct: 607 LFNEGIDIPSIDTVIMLRPTQSATIFLQQLGRGLRRAP--GKSVLTVLDFVGHQREDFSF 664 Query: 854 VDTMRPVVVRPKVEL----QTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIG- 908 +R + + + +L + +E+ + + + ++ QL R++ Sbjct: 665 EPRLRALTGQGRKQLVDSVEKGFSELPAGCEIQFDKMSQKEVLKNVKRQLATTTLRLVNE 724 Query: 909 LATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARL 968 A + R + + +RR +G+ R + +G G A + Sbjct: 725 FADYARRSASPTEYSLRRFLA----ESGLTLGSIFGRSKFRGEPVEMTFIRHRAGLAATI 780 Query: 969 EKLKTDINNLNDAPIFLDIDD 989 + T F +DD Sbjct: 781 DVSPTGTYLRGRVRNFAHVDD 801 >UniRef50_Q6FK44 Similar to uniprot|Q06683 Saccharomyces cerevisiae YDR332w n=1 Tax=Candida glabrata RepID=Q6FK44_CANGA Length = 682 Score = 255 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 140/731 (19%), Positives = 256/731 (35%), Gaps = 102/731 (13%) Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 +L +L + + LR YQ DA+++ AI G++ I +++ATG GKT Sbjct: 1 MLRILKQSFRNNAPSLKWYSTTATPILRDYQNDAIKSCLDAIALGKKRIGVSLATGGGKT 60 Query: 479 RTAIAMMFRLIQSQRFK----RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLT 534 +++ L Q R R L LV RR L EQA+ +RIN D ++ Sbjct: 61 VIFSSLINLLRQRNRGNACRFRTLILVHRRELAEQAVRT--TSRINEDL---NIQLEMGN 115 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 ++ + VA+VQS+++R D I++DEAH Sbjct: 116 QNCDVSNSDVIVASVQSIIRRL----HKYREGDIDLIIIDEAHHA--------------- 156 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPI 654 +Y+++L HF A T P + F E + + + + D + + Sbjct: 157 ----AADSYKKVLKHFRC-DTANTRIPVIGFSATF-ERYDKKSLKES-FDELVYHRGIIE 209 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 I E + + +V+ + DF+ +R L N + N Sbjct: 210 MIDDNWLCESKFTTVRLEVDLSKIPTSTLT------SDFQTGALSRLLNTQTVNSIIYNS 263 Query: 715 LTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV 774 + +L+F V H +E L F ++ + + + Sbjct: 264 YLEKRKENNIKSSLLFGVDINH----IECLERYFNERGIKAKA-------VSSKTSVEDR 312 Query: 775 QTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV 834 Q I L +++ + T G DIP+I I+ R +SR L QM GR RL Sbjct: 313 QKAIRDIKSGEL-EVLLNCGIFTEGTDIPNIDCILLCRPTKSRTLLVQMIGRGLRLHHS- 370 Query: 835 NKTSFKIFDCVDIYS-TLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAE 893 K I D V + SV ++ + + + T E KI + AE Sbjct: 371 -KEYCHIIDFVGSTKAGVVSVPSLLGIE-----SCEDTFDNATLEELRKIKLEEETRMAE 424 Query: 894 HSHEQLVAKLQRIIGLATFNR--DRSETIDKQVRRLDELCQDAAG-VNFNGFASRLREKG 950 + Q A+LQ+ ++ E +V D L + NF + +L + G Sbjct: 425 YQQMQTQAELQKRAHEEMLRNQLNKMEQTLLEVSHGDALDLNLISYANFKEYHEKL-QAG 483 Query: 951 PHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTP---QDF 1007 N++ ++ + K K + D+ + LY D P + Sbjct: 484 IAVDLNKINQIEEELSFIHKSKYAWVRITKNCWAFDLSNG--HHIRLYRSSDKPGGTRYT 541 Query: 1008 LEAFDSLVQRSPNAQPALQAVINRPRDLTRK-GLVELQEWFDRQHFEESSLRKAWKETRN 1066 L+ + + + + + + P L + L ++ ++ + K +++ N Sbjct: 542 LKLYREIPKLYRDEVNSSIRYV--PTILEKDQDLSQITLKLEQ-------VIKKYEDLGN 592 Query: 1067 EDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVV 1126 + R+I + R + S +Q ++++ Q K+ Sbjct: 593 SNSLGRIIKYAR----------------------WRSQEASPKQKILVEKIIQKQLTKLK 630 Query: 1127 LDDDVFKTGNF 1137 +D F Sbjct: 631 NSNDSMNIDPF 641 >UniRef50_Q6BK09 DEHA2F25828p n=5 Tax=Saccharomycetaceae RepID=Q6BK09_DEBHA Length = 704 Score = 254 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 103/505 (20%), Positives = 195/505 (38%), Gaps = 66/505 (13%) Query: 441 SELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQS--QRFKRIL 498 + L LR YQ +A+++V AI +G + +ATG GKT ++ ++ S R + L Sbjct: 36 APLKLRDYQVEAIKSVHNAISRGINRSAVVLATGGGKTVVFSHLISQIKPSTPDRGNKTL 95 Query: 499 FLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQ 558 L + L QA + + N D++ L P + + VA+V +L++ + Sbjct: 96 VLAHKEELVRQAADSIAEINPN---LKVDIDMRKLK---PSSNADVIVASVPTLIR--MS 147 Query: 559 SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALT 618 + I++DE H +++ +IL +F+A Sbjct: 148 RLSKYDPKEFKTIILDECHHA-------------------PANSWSKILQYFEA------ 182 Query: 619 ATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 TP V +T DG + + + RN E V + V S Sbjct: 183 HTPQSQIY------VIGFTATMERSDGKSLAEIFDEIVFERNLLEMVQNKELADVRFSSI 236 Query: 679 QGEV-INDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHA 737 +V + D+E+ ++ + N V + + TL+FCV +H Sbjct: 237 DVDVDLTKVATKKNDYEINSLSQAMNDSEVNLLVALSYSQLQKEFNFKSTLIFCVDISHC 296 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 + F+++ ++ +TG+ K R Q +I F K + ++ V + T Sbjct: 297 KTLCG----VFQREGINAQY-----VTGETAKHER--QAIIEDFKKG-IIEVLCNVQVFT 344 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDI----YSTLES 853 G DIP+I ++ R +SR L QM GR RL KT + D ++ + Sbjct: 345 EGTDIPNIDSLFLARPTKSRPLLVQMIGRGLRLHKS--KTHCHVVDIAGTRGTGIQSVPT 402 Query: 854 VDTMRPVVVRPKVELQTLVNEIT--DSETYKITEADGRSFAEHSHEQLVAKLQRIIGLAT 911 + ++ P + + LV E D + ++ + + + + +A ++ L Sbjct: 403 LFSLPPDYLIHGKSYEELVKEKEEYDEDMERLKKQEILERERNCRLEEIATHNKMNEL-- 460 Query: 912 FNRDRSETIDKQVRRLDELCQDAAG 936 ++RSE ++ + + D A Sbjct: 461 --KERSEKVNLKFKTFDGFMALEAH 483 >UniRef50_Q03EF5 DNA or RNA helicase of superfamily II n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03EF5_PEDPA Length = 950 Score = 254 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 108/535 (20%), Positives = 199/535 (37%), Gaps = 94/535 (17%) Query: 440 MSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILF 499 S L Q+ A++A+ +GQ+ L+ ATGTGKT A + ++ R ++ LF Sbjct: 211 KSPLTPNRMQQAALKALINLRSEGQKRGLIISATGTGKTYLAAFDV----RNYRPRKFLF 266 Query: 500 LVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS 559 +V R + +AL +F++ D L E K AT+Q+L + + + Sbjct: 267 VVHREQILRKALLSFKNVL-----GGPADDYGILAGGTKEIDRKYVFATIQTLSRPDILN 321 Query: 560 DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALT 618 + + +D I++DEAH+ ++Y++I++HF + +T Sbjct: 322 E--LKANTFDYILIDEAHKAG-------------------AASYQKIINHFKPEFLLGMT 360 Query: 619 ATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 ATP I+ Y Y + D I + Sbjct: 361 ATPERTDDFNIYELFDYHIAYEIRLQDAIEEKMLSEFHYIG--------------ITDYE 406 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHA 737 +G+VI D + LV V ++ Y L+FC A Sbjct: 407 YEGQVITDNTPL----------KHLVSRERMDYVEQQIDYYGHDGDQVYGLIFCSRTEEA 456 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 V + + + + +TG+ D R + I +F + +VTVD+ Sbjct: 457 HEVAQIMTQ---------KGHPTVALTGEDSVDNR--EATIKKFENGEI-EYLVTVDIFN 504 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTM 857 G+DIP I ++ LR S I++ Q GR R K I D + Y + M Sbjct: 505 EGIDIPKINQVIMLRNTESSIIFIQQLGRGLR--KSEGKDFVTIIDFIGNYQN----NYM 558 Query: 858 RPVVV--RPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRD 915 P+ + + +L N+I+ ++T ++ + F+E + EQ+ + L + Sbjct: 559 IPIALTGDQTLNKNSLRNKISINQTVGLSSIN---FSEIAREQIYNSINN-SNLTLLTKL 614 Query: 916 RSETID--------------KQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAE 956 R+ ID ++ + N++ F ++ ++ + E Sbjct: 615 RASYIDLKNKLGRVPLLVDFQKYGSTNAQIFVDKYENYHQFLFKMHDQQALTTLE 669 >UniRef50_A9UTX7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UTX7_MONBE Length = 457 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 102/482 (21%), Positives = 170/482 (35%), Gaps = 80/482 (16%) Query: 398 RDVRDTRNMSKALPEW-HRPEELLE---MLGSEPQKQNQWFADNPGMSELGLRYYQEDAV 453 R R + L W H +L + A +P S L +Q D + Sbjct: 16 RMARVPHGPWRDLYPWRHYSSQLARSGVAAARLDHARWIATAASPSASAKTLYQHQTDCI 75 Query: 454 RAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK-RILFLVDRRSLGEQALG 512 A + + ++M TG+GKT ++ RL + ++L L R L QA Sbjct: 76 EQSLTAFGQ-HDRVAVSMPTGSGKTVVFSHLLARLPAPTPSQHKVLVLAHRTELLAQAKR 134 Query: 513 AFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIV 572 E N DI+G D+ + VA+V +L + + A + I+ Sbjct: 135 QIEAHNP-----NLRVDIEGGHAHADVDAADVIVASVPTLGRPSSVRLSRFDPAEFKLII 189 Query: 573 VDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF---------DAVKIALTATPAL 623 +DEAH S Y+RIL HF D +AT Sbjct: 190 IDEAHHA-------------------AASTYKRILHHFFDENRSNPYDVKLWGCSATLQR 230 Query: 624 HTV----QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ 679 H +F Y + T + +GFL +++ + V + KGE Sbjct: 231 HDGLGLDDVFDTIAYSVSLETLLDEGFLAPVRG-MKVDVDLKLDQVRIRKGE-------- 281 Query: 680 GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADM 739 ++ A+ +R + A N V + Y + TLVF V H Sbjct: 282 -------------YDPAELSRLVNTNAQNELVVEQWRRYC-QNERRSTLVFGVDIRHVLD 327 Query: 740 VVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTG 799 + E+ ++ IT RK ++ F+ P +++ +LT G Sbjct: 328 LQEQFKS---------GGVQAESITSLTPNAERKR--ILQAFSDGEFP-VLLNCTVLTEG 375 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRP 859 D+P + ++ R RS L+ QM GR RL P +K + D + +++ M Sbjct: 376 TDLPCVDALIMARPTRSHTLFVQMLGRGLRLHP--DKKDCLVIDVANTFASNSLSSRMAT 433 Query: 860 VV 861 ++ Sbjct: 434 LM 435 >UniRef50_C0QBM3 RecQ1 n=2 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QBM3_DESAH Length = 1040 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 107/561 (19%), Positives = 192/561 (34%), Gaps = 84/561 (14%) Query: 379 STNGREYRATM--KTKSGIWYR-------DVRDTRNMSKALPEWHRPEELLEMLGSEPQK 429 T+G E+ + + +W + +R +L R L L E Sbjct: 240 LTDGLEWNVKLCQQESDHLWEKINATFETYLRSREFEPISLESLPR---LERALNQERGG 296 Query: 430 QNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQ-EILLAMATGTGKTRTAIAMMFRL 488 + YQ++ + ++ + L+ ATGTGKT A + Sbjct: 297 GAFSADQELSFFNIVPYVYQQEILDTLKAERALHHRWRNLVVAATGTGKTIIAAFDFKQS 356 Query: 489 IQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVAT 548 + KR+LF+ R + Q+ G F + + F ++ D + + Sbjct: 357 FERPGQKRMLFVAHREEILVQSRGVFRNI-LRDHNFGELWVGNHRPDHLEK-----LFVS 410 Query: 549 VQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILD 608 VQ+L R L + +P +D IVVDE H G +Y+R+LD Sbjct: 411 VQTLNARAL--WDQVPPDFFDYIVVDEFHHG-------------------AAPSYQRLLD 449 Query: 609 HFDA-VKIALTATPAL----HTVQIF-GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ 662 +F + + LTATP + F G A+ L P Q Sbjct: 450 YFTPKILLGLTATPERADGKDILAWFHGRICSEIRLPDAINQKLL----SPFQYFG---- 501 Query: 663 EGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT 722 +S + Q + + D R + + L Sbjct: 502 ----ISDCVDYSHVKWQRGGYDRNGLEKLLITGDDI--------RARLIIEKAKEILLDV 549 Query: 723 GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFN 782 + + + FCV+ AHA + E+ +AA + + +T + +D R+ + R Sbjct: 550 SAARGICFCVSQAHAGYMAEKFQAA---------GISAMALTAETARDVRR--AAVKRL- 597 Query: 783 KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIF 842 ++R N + VDL GVDIP I ++FLR S ++ Q GR RLC K + Sbjct: 598 QQRDVNFLCVVDLFNEGVDIPEIDTVLFLRPTESLTVFLQQLGRGLRLCE--GKEHLTVL 655 Query: 843 DCVD-IYSTLESVDTMRPVVVRPKVELQTLVNEIT---DSETYKITEADGRSFAEHSHEQ 898 D + + R ++ + ++ + S E + + + ++ Sbjct: 656 DFIGQAHQKFNFEIRFRSLLGKTSSRVEDEITASFPSLPSGCVIEMEKEAQRHVLDNIKK 715 Query: 899 LVAKLQRIIGLATFNRDRSET 919 + + + +ET Sbjct: 716 ALTHASKNQMIQRMATFEAET 736 >UniRef50_Q59PU6 Putative uncharacterized protein n=1 Tax=Candida albicans RepID=Q59PU6_CANAL Length = 623 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 116/632 (18%), Positives = 233/632 (36%), Gaps = 99/632 (15%) Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILL 469 + P L++ + + W++ + LR YQ++A+ ++ +A G + + Sbjct: 2 VANCFTPRVLVKYMKYKLSPIQSWYSKR-LIHSFALRDYQQEAIDSILEASESGVKRQAI 60 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 MATG+GKT ++ L + + L L + L Q+ TRIN D I Sbjct: 61 EMATGSGKTVVFSHLIPLL--KGKGTKTLVLEHTQELIAQSYDKI--TRINPDLRVGIE- 115 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 + + + + VA+VQSL T + + I++DE H Sbjct: 116 ---MAESRARLNDDVIVASVQSLA--TNKRFTKFNPDDFKTIIIDECHHAV--------- 161 Query: 590 ELQFRSQLDYVSAYRRILDHFDA-------VKIALTATPALHTVQ----IFGEPVYRYTY 638 Y++IL HF A I TAT A Q +F V++ + Sbjct: 162 ----------APTYQKILKHFKADTKNTNINVIGFTATLARADKQMLKAVFDRIVFQRSL 211 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADF 698 T + + L R V + +D++ Sbjct: 212 ATMIFNKELASFKASKLYFKRLNLSNVKMK---------------------GKDYDPKAL 250 Query: 699 NRGLVIPAFNRAVCNELTNYLDPTGSQK-TLVFCVTNAHADMVVEELRAAFKKKYPQLEH 757 ++ N + L Y++ K TL+FC+ H V L+ ++ Sbjct: 251 YNAVLKAGINEHL---LLAYMELEKEYKSTLIFCINVEHCREVCALLQKQ------GVDA 301 Query: 758 DAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 +I T ++++ +T++ F + + P ++ V + T G DIP+I +I+ R +S+ Sbjct: 302 RYVISETSNSER-----KTIVADFKQGKFP-VLCNVTVFTEGTDIPNIDSIILARPTKSK 355 Query: 818 ILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITD 877 L QM GR RL E K+ + D V I ++ ++ ++ +++++ D Sbjct: 356 PLMIQMIGRGLRLHKE--KSHCHVVDLVGI---MDENLELKAILEGKQLQMKKA----KD 406 Query: 878 SETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGV 937 T KI D ++ E+ +++ ++ + + + N ++D + E D Sbjct: 407 GTTSKIESRDQVNYFEN--DRISKTIECALQIHSKNIVELRSVD-GLELFREYMSDVGVG 463 Query: 938 NFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEV------ 991 +++ + E FI ++ + + L++ E+ Sbjct: 464 GRYNTLFLIKKITGYGQTEYQLTYNKFIKEDFSTYQELEFIGKSNNVLELLRELAERFPE 523 Query: 992 -VSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQ 1022 + Y D++ P D+ + S + + Sbjct: 524 DARHAASYRDFERPCDY--SQVSFIMSHLTEK 553 >UniRef50_C6HZP0 Type III restriction enzyme, res subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZP0_9BACT Length = 950 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 104/438 (23%), Positives = 158/438 (36%), Gaps = 81/438 (18%) Query: 422 MLGSEPQKQNQWFADN-PGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 +P Q +D G + Q++ + ++ + G + L +ATG GKT Sbjct: 300 RARRKPPSWGQGLSDILGGSASPRPTPLQDEVLLSLAELRADGARRALAILATGLGKTYL 359 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED 540 A + F R+LFL RR + EQA F +++ + Sbjct: 360 AAFDC------RGFSRVLFLAHRREILEQARETFFRVHPEKP-------ASVVSEGEADV 406 Query: 541 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 S + A VQ+L + + +P +D IVVDE H Sbjct: 407 SGDLVFAQVQTLARPS--RLLNIPPETFDYIVVDECHHA-------------------EA 445 Query: 601 SAYRRILDHFDA-VKIALTATPAL-HTVQIF----GEPVYRYTYRTAVIDGFLIDQDPPI 654 +YRRILDHF + LTATP IF G V R T+ + G L+ P Sbjct: 446 PSYRRILDHFRPKFVLGLTATPYRMDNGDIFALMDGHVVCRRTFIEGIRGGMLV----PF 501 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 L E I +G ++ R L + Sbjct: 502 HYFG--------LKDTVDYETIPWRG----------GRYDPEALERALTESRRAQETLRA 543 Query: 715 LTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV 774 + KT+ FCV+ HA ++ E E A +TG+ R+ Sbjct: 544 FREH----EGSKTVAFCVSRLHARLLAEFFSR---------EGIAAGHLTGETPSGERR- 589 Query: 775 QTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV 834 ++ +F + L +I+ VDLL GVDIP I ++ LR S ++ Q GR RL P Sbjct: 590 -EILRKFREGSL-SILFVVDLLNEGVDIPEIDRVMLLRPTDSPTVFLQQIGRGLRLAP-- 645 Query: 835 NKTSFKIFDCVDIYSTLE 852 K I D + + + Sbjct: 646 GKGHLTILDFIGNHKRAQ 663 >UniRef50_A9GJE0 Putative helicase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GJE0_SORC5 Length = 1030 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 114/583 (19%), Positives = 202/583 (34%), Gaps = 72/583 (12%) Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 P + E L N + EL +QE + + + +G LL ATGT Sbjct: 282 PYDRAEFLERVDLATNAAPSVMLSPIELRAEPFQERLLEQIALSRERGHHRNLLVSATGT 341 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKT A RL ++ R+LF+ R + EQ+L F + F ++ + Sbjct: 342 GKTVMAAIDYARLREALPRARLLFVAHRGEILEQSLATFRH-GLRDHAFGELW----VGG 396 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 + P + A++QSL L +P + +D +++DE H Sbjct: 397 RHPRRFEHV-FASIQSLSAAGLDDLDP---SHFDVVIIDEFHHA---------------- 436 Query: 596 QLDYVSAYRRILDHFDAV-KIALTATPALHTV-QIFGEPVYRYTYRTAVIDGFLIDQDPP 653 +YR +L+ V + LTATP + G R + D + P Sbjct: 437 ---AAPSYRVLLERVRPVELLGLTATPERSDGLPLLGWFDDRIAAELRLWDAIDQHRLVP 493 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAF-NRAVC 712 G++ G + + + + ++V ++ L R V Sbjct: 494 FVY------YGIH--DGLDLRDVPWRR---------GRGYDVDGLSKLLTANDVWARQVV 536 Query: 713 NELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDAR 772 +L ++D T + + L FCV+ HA + A A + GD+ D R Sbjct: 537 AQLVAHVDDTRTIRALGFCVSIEHARFMARVFHEA---------GVAATAVWGDSPDDER 587 Query: 773 KVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 + + R+ N+V +VDL G+D+P++ ++ LR S L+ Q GR R Sbjct: 588 R--AALADLGARRI-NVVFSVDLFNEGIDVPAVDTLILLRPTDSPTLFLQQLGRGLR--R 642 Query: 833 EVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFA 892 KT + D V + D ++ + LV ++ + A Sbjct: 643 SAGKTVCTVLDFVGHHRREFRFDRRFAALL--GGSRKELVQQV--ERGFPFLPAGCHMEL 698 Query: 893 EHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPH 952 + +LV + R + + E +RRL + L + Sbjct: 699 DQKASELVLENIRQAVPSGWTAKVDE-----LRRLARSGDVSLARFLEETGLELEDVYAG 753 Query: 953 WSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVK 995 + + + L + L A L D+ V ++ Sbjct: 754 QRSWSDLRDDAGLPSL-GVGPHEQVLRRACGRLLHVDDFVRIE 795 >UniRef50_C6R1X3 Helicase n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1X3_9MICC Length = 1075 Score = 252 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 110/515 (21%), Positives = 201/515 (39%), Gaps = 76/515 (14%) Query: 447 YYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLI-QSQRFKRILFLVDRRS 505 +Q + ++ A KG+ L ATGTGKT + RL QS + ++LF+ R+ Sbjct: 323 PHQVRMLEEMQNARSKGRHRNLAVAATGTGKTVFSALDYRRLCEQSGKKLKLLFIAHRKE 382 Query: 506 LGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPV 565 + +QA F D + G+ F + LT + + AT+Q+L L++ P Sbjct: 383 ILDQARRTFGDVMLKGN-FGEL-----LTGGKKPEYNEAVFATIQTLSGAALENYAP--- 433 Query: 566 ARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-IALTATPALH 624 +D I++DE H +++ ++ ++F+ + I LTATP Sbjct: 434 DYFDVIIMDECHH-------------------IKAASWDKVFNYFEPREFIGLTATPERE 474 Query: 625 TV-----QIFGEPVY-RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 + F V A+ D L+ P Q ++ G + RI+ Sbjct: 475 DGVNIADKYFDGYVATSIRLWDALEDHLLV----PFQYFG--------IADGTDLRRINV 522 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHAD 738 +G ++ ++ + + R L R + EL +D K L FCV+ HA+ Sbjct: 523 RGGKYDENALENL-YTKDEAERRL------RIIVEELREKVDNPLRMKALGFCVSVKHAE 575 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 + ++ + D ++ D R+ + M ++ + TVDL Sbjct: 576 YMAQKFNEV------GIPADFLVG----TDSAERRAEVMKNLADEAHELTTIFTVDLFNE 625 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMR 858 GVDIPS+ ++ LR +S L+ Q GR R P K+ + D V ++ + M Sbjct: 626 GVDIPSVDTLLMLRPTQSLTLFLQQLGRGLRRAPL--KSVLTVLDFVGH----QNKNFMI 679 Query: 859 PVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFN-RDRS 917 R TL + D E+ ++ E + +Q++ K++ + + D + Sbjct: 680 HSKYRAFARQGTLTEQ--DIESPELPAGCHFHLDELTQKQVIKKIRESLRMNQNALIDTA 737 Query: 918 ETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPH 952 ++ + +RR F +R P Sbjct: 738 KSYLEDIRRNSTEP--DIRPTVIDFINRYGLGLPQ 770 >UniRef50_B5CWI1 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CWI1_9BACE Length = 1039 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 104/489 (21%), Positives = 173/489 (35%), Gaps = 74/489 (15%) Query: 436 DNPGMSELGLRYYQEDAVRAVEKAIVK-GQQEILLAMATGTGKTRTAIAMMFRLIQS--- 491 D L +Q+ + ++ + G L+ ATGTGKT + Q Sbjct: 301 DTFVYQRYSLLPHQKQILDKLKVEREECGNFRNLVVAATGTGKTVISAFDYQSFCQQQTG 360 Query: 492 -QRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQ 550 R RILF R + Q+L + + F +++ E ++ Sbjct: 361 VGRTSRILFTAHREEILRQSLHTYRSV-LQDANFGTLWVGNEAPQT--EADYAHLFVSIS 417 Query: 551 SLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF 610 R +P YD IV+DEAH +YR++ HF Sbjct: 418 MFNSRFEALFSQLPADYYDYIVIDEAHHSQ-------------------ADSYRKLFSHF 458 Query: 611 DA-VKIALTATPALHTV-----QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEG 664 + I LTATP G A+ G L P Q + Sbjct: 459 HPQLLIGLTATPERMDGKDLRPDFGGRISAEIRLPQALQAGLL----TPFQYL------- 507 Query: 665 VYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS 724 ++ ++ +D+L + Q + + L +P + + + L YL + Sbjct: 508 ----------CVTDDTDLTDDSLWNGQRYVIDRLADKLCVPERAQHIVDALHRYLADEYT 557 Query: 725 QKTLVFCVTNAHADMVVEELRA-AFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNK 783 + L FCV HAD + +L+ F K +T D + RK + Sbjct: 558 CRALCFCVNKKHADFMALQLQKYGFNAK----------SLTSDTPQPQRK--QLAEDLRN 605 Query: 784 ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 L + + VD+ GVDIP + ++FLR S ++ Q GR RL P KT + D Sbjct: 606 G-LVHYLCVVDIFNEGVDIPEVDTVLFLRPTDSLTIFLQQLGRGLRLSP--GKTELTVLD 662 Query: 844 CV-DIYSTLESVDTMRPVVVRPKVEL-QTLVNEIT--DSETYKITEADGRSFAEHSHEQL 899 V + + R + +RP+ + Q + N T + I E R + + +Q Sbjct: 663 FVAQAHKKYDFASKFRALTLRPEKNIAQQIANGFTLLPTGCSIIMEKQARQYILENIQQA 722 Query: 900 VAKLQRIIG 908 + R++ Sbjct: 723 IYNKNRLVK 731 >UniRef50_B1YFS4 Type III restriction protein res subunit n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YFS4_EXIS2 Length = 1052 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 104/556 (18%), Positives = 186/556 (33%), Gaps = 84/556 (15%) Query: 431 NQWFADNPGMSE-LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLI 489 N A+ P E + Q A+ + + +K Q + ++ ATGTGKT A + + Sbjct: 283 NDRVAEPPVEYEVIQPNEMQLPALEQLHRLRLKQQTKAMVIAATGTGKTYLAAFDVKQF- 341 Query: 490 QSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATV 549 KR+LF+ R L QA F+ +GD + + + AT+ Sbjct: 342 ---DAKRVLFVAHRGKLLSQAEETFKKIFTDGDATFGRYQANQ-----KDLDKQFIFATI 393 Query: 550 QSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDH 609 Q+ K E +D I++DE H +Y++IL++ Sbjct: 394 QTFSKEIH--LEQFDPNTFDYIIIDEFHHAAS-------------------ESYQKILNY 432 Query: 610 FDA-VKIALTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYL 667 F + +TATP + IF + Y + D D P E + Sbjct: 433 FTPQFLLGITATPERMDGLNIFKLVDHNIAYEIRLYDALAQDLLTPFHYFGIQDDEAIDY 492 Query: 668 SKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKT 727 + + + D L + + +T + ++ Sbjct: 493 EV----------------IPQKNGLYIEKDLVEALERSSRTEYILEMMTKFGHSGTARVG 536 Query: 728 LVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLP 787 L FCV HA+ + E + IT + R + I R ++ P Sbjct: 537 LGFCVNIDHAEYMAAEFNK---------HQIESLAITSKQTEAER--EHAIQRLEDDQDP 585 Query: 788 -NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD 846 + + TVDL GVDIP I ++FLR S ++ Q GR R +K I D + Sbjct: 586 LSFIFTVDLFNEGVDIPKINVMLFLRPTESPTIFIQQLGRGLR--KHKSKEYVTILDFIG 643 Query: 847 IYSTLESVDTMRPVVVRPKVELQTL----VNEITDSETYKITEADGRSFAEHSHEQLVAK 902 + P+V+ + ++ V + + E + ++ + Sbjct: 644 NSQRA----FVAPLVLSGQQSFHSIDRYHVANAVQNHFPILPEGSLAILDRVTESFIIEQ 699 Query: 903 LQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNF--NGFASRLREKGPHWSAEVFNK 960 +++I + KQ+R + G N + + + Sbjct: 700 MKKI----------EFSASKQLRESYQRLITMIGDTPSLNDLVTHPDAPAIETIIQQWKS 749 Query: 961 LPGFIARLEKLKTDIN 976 + +LEK+ TD Sbjct: 750 VLRL-KQLEKVATDEE 764 >UniRef50_P33919 Uncharacterized protein yejH n=254 Tax=Proteobacteria RepID=YEJH_ECOLI Length = 586 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 109/457 (23%), Positives = 173/457 (37%), Gaps = 63/457 (13%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 LR YQ++AV A + + ++ + TG GK+ + RL + R+L L Sbjct: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RLARG----RVLVLAH 57 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 + L Q ++ + D F + K E K+ +VQS+ + Sbjct: 58 VKELVAQNHAKYQALGLEADIFAAGL-------KRKESHGKVVFGSVQSVARNLDAF--- 107 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV-----KIAL 617 + ++VDE HR D S Y++IL H V + L Sbjct: 108 --QGEFSLLIVDECHR----------------IGDDEESQYQQILTHLTKVNPHLRLLGL 149 Query: 618 TATPALHTVQIFGEPVYRYTYRTAVI-DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERI 676 TATP +Y++ Y V D + +D ++ R + YL+ E+++ Sbjct: 150 TATPFRLGKGW----IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP 205 Query: 677 SPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKT-LVFCVTNA 735 Q + + + F AD NR L R + ++ ++ ++K ++F T Sbjct: 206 VVQYDFSRLQAQSNGLFSEADLNREL--KKQQRITPHIISQIMEFAATRKGVMIFAATVE 263 Query: 736 HADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 HA +V L + ITGD R V +I F +R +V V + Sbjct: 264 HAKEIVGLL-----------PAEDAALITGDTPGAERDV--LIENFKAQRF-RYLVNVAV 309 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD 855 LTTG D P + I LR S LY+Q+ GR RL P KT I D L + + Sbjct: 310 LTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDLYAPE 367 Query: 856 TMRPVVVRPKVELQTLVNEITDSETY-KITEADGRSF 891 P V +Q + T+ T ADG Sbjct: 368 VGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLI 404 >UniRef50_C0QBN3 HsdR3 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QBN3_DESAH Length = 1076 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 110/545 (20%), Positives = 180/545 (33%), Gaps = 97/545 (17%) Query: 329 RYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSG----KQRFKIPFCYSTNGRE 384 Y + LR +L H + +V ++ + R I F S+N Sbjct: 67 DYLDVTEPAALRRLMLLHEAGADVRIHACHNGGAFHTKAYIFIRNDREGIAFIGSSN--- 123 Query: 385 YRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL----------LEMLGSEPQKQNQWF 434 + T+ W + + S + +L + + Q++ Sbjct: 124 LSESALTQGIEWNLCIDSCQTPSAFVQACTSFSQLFNKTTTLGLSWDWIEQYEQRRVPIE 183 Query: 435 ADNPGMSELGLRYY--QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQ 492 + + + QE A+ A+ + G Q L+ MATG GKT A+ + R Sbjct: 184 LPDSEIPPPLPAPHPIQERALEALRDSRNNGLQRALVVMATGVGKTWLAVFDILR----N 239 Query: 493 RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL 552 F R+LF+ R + QA F T N + + I +VQSL Sbjct: 240 GFGRVLFVAHREEILSQAASTF-------LTVNPRMKVGFFHGNEKSEDADILFGSVQSL 292 Query: 553 VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA 612 K+ + +D IV+DE H ++Y+ IL++F Sbjct: 293 GKKIH--LKKFDRTAFDYIVIDEFHHAS-------------------AASYQNILNYFTP 331 Query: 613 -VKIALTATPALHTV---QIF--GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVY 666 + LTATP + F +R+ A+ G L P G+Y Sbjct: 332 SFLLGLTATPERSDGRDIEAFCDNNVAFRFDLTEAIEAGRLC----PFTYF------GIY 381 Query: 667 LSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQK 726 + + F+ A+ A + E T G + Sbjct: 382 DRHVDY-----------ELIPWRSRRFDPAEIETAFETQARALQIFEEWT----EKGQSR 426 Query: 727 TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERL 786 TL FCV+ HAD + +K K + I R + L Sbjct: 427 TLGFCVSIHHADFMASFF------------SGKGVKAVSVHSKSMVRRHDAIDRLSNG-L 473 Query: 787 PNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD 846 I+ VDL GVDIP I ++ +R S ++Y Q GR RL + K + D + Sbjct: 474 LQIIFCVDLFNEGVDIPGIDTVLMVRPTESPVVYLQQLGRGLRL--KDGKERLVVIDFIG 531 Query: 847 IYSTL 851 + + Sbjct: 532 NHRSF 536 >UniRef50_UPI000050FF3C type I site-specific deoxyribonuclease, HsdR family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FF3C Length = 1021 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 168/832 (20%), Positives = 278/832 (33%), Gaps = 160/832 (19%) Query: 206 QLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTL 265 L N +A+Q E+ ++ + RTL L+ E L+ A A W T Sbjct: 47 ALVRLNPLIAEQPERGQEIMRRL-------RTLPLTASEVG-LVAANRDFASWLRGLNTH 98 Query: 266 RF--SKGARP-------EPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN 316 + +KG+ P P N + TGN D VL+V P+AV E K Sbjct: 99 EYIGTKGSHPVTLIDFEHPERNTLVVSDEVRFGTTGNIARFDVVLWVNGLPLAVGELKSP 158 Query: 317 NIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIP- 375 V A ++ E V YE W F +P Sbjct: 159 ---VNAGVSWLK----------------------GSTEFVTHYEPKW------PAFFVPN 187 Query: 376 -FCYSTNGREYR-ATMKTKSGIW--YRDVRDTRNMSKALPEWHR---PEELLEMLGSEPQ 428 ++T G+E+R + T W + V++ ++ L P LL ML Sbjct: 188 VLTFATEGKEFRYGAVATPVQYWQAWGAVQEKPRLATVLDSARSLLNPATLLSMLADYTL 247 Query: 429 KQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVK-GQQEILLAMATGTGKTRTAIAMMFR 487 +N G+ +L RY Q AV + +++ L+ G+GKT + R Sbjct: 248 YENSA-ETTGGLHKLLARYTQFQAVNLIVDRTKDPAKRKGLIYHTQGSGKTLAMVFAAGR 306 Query: 488 LIQSQRF--KRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIH 545 L++ + I+ + DR L Q F T + L +D+ + Sbjct: 307 LVRDPQMCNPTIVVVADRVQLVRQMWDQFRTT--DMPRIRVPDSAGELHRLLKQDTRGLI 364 Query: 546 VATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRR 605 TV + +D ++VDEAHR + D +A RR Sbjct: 365 FTTVHKFSNAGVLNDR-----ENIVVMVDEAHR---------------TQEGDLGAAMRR 404 Query: 606 ILDHFDAVKIALTATP----ALHTVQIFGE------PVYRYTYRTAVIDGFLIDQDPPIQ 655 L +A A T TP +T FGE ++ Y ++ DG + PI Sbjct: 405 ALP--NANLFAFTGTPIADEDRNTFATFGESEDPGSALHTYGTDESIRDGMTV----PIH 458 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRG---LVIPAFNRAVC 712 + R + + ++ Q + ED+QD +R P RAVC Sbjct: 459 VAPRKVE---FALDKAALDDAFEQLSLAEGLTEDEQDALAKRASRASTFFSNPERIRAVC 515 Query: 713 NELTNY----LDPTGSQKTLVF---CVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT- 764 ++ ++ +DP G + +V A+ + + L +++++ + ++ Sbjct: 516 KDIIDHFYSTIDPLGQKAQIVVVDRAACIAYTEEIDRLLEERYQRQFAETTPSEDVREDD 575 Query: 765 -----------------GDADKDAR------KVQTMITRFNKERLP-NIVVTVDLLTTGV 800 GD + A+ + +T++ F P +V L TG Sbjct: 576 LPMRDEVGLVMTVSPGKGDPEGWAKYRLSDAQEETLLKHFRTHGDPLKFLVCTSKLGTGF 635 Query: 801 DIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV----NKTSFKIFDCVDIYSTLESVDT 856 + P + + ++ L+ Q RA R +K I D V + S Sbjct: 636 NAPIEGVMYLDKPLKDHTLF-QTITRANRTWRNPQSGDDKRHATIVDYVGLGSGFARA-- 692 Query: 857 MRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDR 916 M P + K T DG E HEQL + R G+ Sbjct: 693 MSPA---------------DPDKASKTTYIDG--LLEQFHEQLKTTMVRFAGIDLSTTGP 735 Query: 917 SETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARL 968 ID Q R D+ +D NF P+ F++++ Sbjct: 736 QTLIDAQARMPDQEAEDDFAANFQMLQGIWEAVAPNDELAASRSQYRFLSQV 787 >UniRef50_A0LI77 Type III restriction enzyme, res subunit n=6 Tax=cellular organisms RepID=A0LI77_SYNFM Length = 1077 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 129/743 (17%), Positives = 246/743 (33%), Gaps = 119/743 (16%) Query: 386 RATMKTKSGIWYRDVRDTRNMS-KALPEWHRPEELLEMLGSEPQKQNQWFADN--PGMSE 442 A + +W R +++R +P ++ E +LE + P ++ Sbjct: 312 HARTRPVDHVWIRQYQESRRPPCINVPPSNQGEVILEEAQRNWGRLPVSVPAEIVPEDAK 371 Query: 443 LGLRYY--QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFL 500 + Q +A+ A+ + +G Q L+ +ATG GKT A R ++LF+ Sbjct: 372 PSPEPHRIQREALEALARTRAEGNQAGLVVLATGLGKTWLAAFDSVRF----GAGKVLFV 427 Query: 501 VDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD 560 R + QAL F R + T+K P + A++Q+L + Sbjct: 428 AHREEILRQALKTFRRIRPFA-----ALGLYNGTEKLP--GADVLFASIQTLGRTNH--L 478 Query: 561 EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTA 619 +D +V+DE H +Y++++DHF A + LTA Sbjct: 479 RSFDRNLFDYVVIDEFHHAS-------------------ARSYQKLIDHFQPAFLLGLTA 519 Query: 620 TPALHTVQIF-----GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 TP VYR + DG L P + ++V+ Sbjct: 520 TPERTDGGDLLALCAENLVYRCDLVEGIRDGLLC----PFRYFG----------VPDEVD 565 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 + F R + R N L Y G ++TL FC + Sbjct: 566 YSNIPWR--------SGRFNEEALTRAVATK---RRAVNALEQYRSRAG-RRTLAFCCSQ 613 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 HAD + + + + + + + R L +++ VD Sbjct: 614 RHADFMADYF-----------TNQGVRAASVHSGPQTAPRGGTLKRLTDGEL-DVIFAVD 661 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV 854 + GVD+P++ ++ LR SRIL+ Q GR R+ K ++ D + + + Sbjct: 662 MFNEGVDLPNVDTVMMLRPTESRILWLQQFGRGLRVAE--GKDYLRVIDYIGNHRSFLLK 719 Query: 855 DTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNR 914 + R EL + + + T+ + ++ + + L A ++ Sbjct: 720 PRTLLGLGRGDNELSMALEAVQNG-TFDLPPGCEVTYELEAVDVLRALIKMPPAHEALRF 778 Query: 915 DRSETIDKQVRRLDELCQDAAGVNFN----------GFASRLREKGPHWSAEVFNKLPGF 964 + + RR + G N F + + + + N G Sbjct: 779 WYEDFKENNDRRPTAVEAFHEGYNPRSARKNYGSWFRFLAAMGDLSADERNVLENSRAGD 838 Query: 965 IARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPN---- 1020 + + + + +++ + + +E F L RS Sbjct: 839 FLDILETTPMSRSFKMLTLMAMLNEGQLP------GQIKVERLVEGFAQLALRSATLRTD 892 Query: 1021 ------AQPALQAVINR-P-------RDLTRKGLVELQEWFDRQHFE-ESSLRKAWKETR 1065 + AL+ + R P R RK ++ F E ++R A+ E Sbjct: 893 VGVDLQDRAALRRYLERNPIEAWTGGRGTKRKSFFSYRDGVFGATFTLEDAIRAAFHELA 952 Query: 1066 NEDIAARLIGHIRRAAVGDALKP 1088 E I RL +++R ++ + + Sbjct: 953 REIIDWRLAEYLQRPSLSNPVTS 975 >UniRef50_C5D556 Type III restriction protein res subunit n=2 Tax=Bacillaceae RepID=C5D556_GEOSW Length = 1053 Score = 249 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 118/685 (17%), Positives = 229/685 (33%), Gaps = 81/685 (11%) Query: 385 YRATMKTKSGIWYRD--VRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSE 442 Y T IW + V + E+ + LE + + Sbjct: 244 YEQTKWIFDQIWNSEEAVTLDSEFIRYYSEFIEAKRKLENFRKKEMIAAETKEHYQTKHS 303 Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 + QE A+R ++ G + ++ ATGTGKT + + ++ K++LF+ Sbjct: 304 IKPNAMQEKALRNLQHTRKNGNNKGVIIAATGTGKTYLSAFDV----KAFNPKKLLFIAH 359 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 R L + A+ F+ + F I T E +TVQSL K + + Sbjct: 360 REELLDNAIKTFQQVIPKKEIFGKI------TGTVKEFDKPYLFSTVQSLHK--DEILKR 411 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATP 621 +D I++DE H YR+++D+F + LTATP Sbjct: 412 FKRDEFDYIIIDEFHHA-------------------EAPTYRKVIDYFQPKFLLGLTATP 452 Query: 622 ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGE 681 R + L D + +I R A E L+ + Sbjct: 453 ERMDG------------RDVLA---LCDHNIVYEIRLREALEANLLASFHYFGVSDHTVD 497 Query: 682 VINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVV 741 L++ F+ + L + + Y L FC HA + Sbjct: 498 YSKIPLKNGF-FDEDALVKALKTNERTDFIIEMIKTYGYHGDRMIGLGFCTNIEHAKYMS 556 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLP-NIVVTVDLLTTGV 800 EE +TG+ D R + +I + E P ++ TV++ G+ Sbjct: 557 EEFNK---------RGYHTTYLTGEHSIDYR--EKVIKQLEDENHPLELIFTVNIFNEGI 605 Query: 801 DIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPV 860 DIP + I+FLR S ++ Q GR R K I D + Y + P+ Sbjct: 606 DIPKLNLILFLRPTESSTVFIQQLGRGLRKVE--GKEFVTILDFIGNYQK----SFVVPL 659 Query: 861 VVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETI 920 + ++ + + E + + + + + + + + ++ Sbjct: 660 ALSGQLNHKAF--DKDSLRVAVTHEFADLPAGSYVDLDPITQKEILDRIDSIKMNSTDM- 716 Query: 921 DKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLND 980 ++ L + ++ G E+ P + K ++ EK+ D+N L+ Sbjct: 717 ---LKSLYQQFKNELGRAPEILDFLYYEQSPSLTF-FIYKYQSWVKTKEKM-NDVNELDR 771 Query: 981 APIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGL 1040 + + E+V P DF+ + +Q++ + ++ + R Sbjct: 772 KILGHQLMSEIVERLENQFPIKWPYDFIILELAFLQKNVSYTDVVKQLEKR-----FATK 826 Query: 1041 VELQEWFDRQHFEESSLRKAWKETR 1065 ++L++ + L +K+ + Sbjct: 827 IDLEKHQTLIRQSMARLATPYKKQK 851 >UniRef50_D2MPK0 DEAD/DEAH box helicase n=2 Tax=Firmicutes RepID=D2MPK0_9FIRM Length = 528 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 112/506 (22%), Positives = 180/506 (35%), Gaps = 86/506 (16%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 + LR YQE+A RA+EK G + LL + TG GKT ++ ++ KR+L + Sbjct: 1 MELRPYQEEARRAIEKEWASGVKNTLLVLPTGCGKTVVFSKVIEDQVKEG--KRVLVMAH 58 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 R L +QA I+ ++ V +VQSL++ + Sbjct: 59 RGELLDQATDKLHKMT------GLTCAIEKADQSCLGTWNRVVVGSVQSLMRPS--RLAK 110 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATP 621 +D I+VDEAH Y R+L+HFD A + +TATP Sbjct: 111 FNKDYFDAIIVDEAHHAVSD-------------------TYTRVLEHFDQANVLGVTATP 151 Query: 622 ALHT----VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 +F Y Y+ A+ +G+L +I + + + Sbjct: 152 ERSDMRKLGSLFQSLAYEYSIVQAIKEGYLC------KIKAQTVPLKIDM---------- 195 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAH 736 ++ V DF+ NE+ LDP Q T + V Sbjct: 196 -----------NNVSVTVGDFS------------ANEIGTALDPYLEQIATEMETVCKDR 232 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLL 796 +V L A +K L + + + D R + ++ FN + N++ LL Sbjct: 233 KTVVFLPLIATSQKFKNILINHGFKAAEVNGNSDDR--EQILKDFNDNKY-NVICNSMLL 289 Query: 797 TTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLE--SV 854 T G D P + IV LR + R LY QM GR TRL P K I D + + E Sbjct: 290 TEGWDCPDVDCIVVLRPTKVRSLYCQMVGRGTRLSP--GKEDLLILDFLWLSERHELCRP 347 Query: 855 DTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNR 914 + ++ + E E + E + S + E+ + L + Sbjct: 348 ADIICTDKEVSKKMTENLAESGCPEDIEEAEKEASSDVQMQREEAL-----KAQLEAMKK 402 Query: 915 DRSETIDKQVRRLDELCQDAAGVNFN 940 R +D + +D G + Sbjct: 403 RRRRLVDPLQFEMSIQAEDLTGYMPS 428 >UniRef50_A7HHG6 Type III restriction protein res subunit n=8 Tax=Bacteria RepID=A7HHG6_ANADF Length = 1418 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 99/505 (19%), Positives = 163/505 (32%), Gaps = 69/505 (13%) Query: 428 QKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFR 487 + + + P E+ Q DA+ A+ G++ L+ MATG GKT A Sbjct: 319 ETEAEPLTAAPDPHEI-----QRDALDALAATRADGEKRALVVMATGLGKTLLAAYDADA 373 Query: 488 LIQS-QRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHV 546 + R+LF+ RR L QA F + + E I V Sbjct: 374 FRSTLDHPIRVLFIAHRRELLVQAATTFRRVLRGAMP---DLRVGWFAEDRSELEADIVV 430 Query: 547 ATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRI 606 A+VQ L + ++ E + R+D +VVDE H +YRRI Sbjct: 431 ASVQKLSRP--ENLERLAAERFDYVVVDEVHHA-------------------EAPSYRRI 469 Query: 607 LDHFDA-VKIALTATPALHT-VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEG 664 L D + LTATP + G L D + P + E Sbjct: 470 LSRIDPGFLLGLTATPDRADEGDVLG----------------LFDDNLPFRADLGVGIEA 513 Query: 665 VYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS 724 L ++ ++ F+ + + + L + G Sbjct: 514 KRLVPFAYFGLKDTVDYSHDNIPWRNRRFDPKRLEEAVQTQERMERLWSALGEH----GG 569 Query: 725 QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKE 784 +TLVFC + HA+ F K++ + + + D D R + Sbjct: 570 MRTLVFCCSIPHAE---------FAKRWLEGRGVRVRAVHSDPGSDDRSR--ALADLAAG 618 Query: 785 RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDC 844 R+ + V VDL GVD+P + +V LR S +++ Q GR R+ K + D Sbjct: 619 RI-DAVCAVDLFNEGVDVPLVDRVVMLRPTESPVVFLQQLGRGLRIAE--GKERLTVIDF 675 Query: 845 VDIYSTLESVDTMRPVVVRPKVELQTLVNEIT---DSETYKITEADGRSFAEHSHEQLVA 901 V + + + +L+ + + D Sbjct: 676 VGNHRVFLDRVRTLLSLGDARPDLRAFLEGGEAELPPGCSIDVQLDAIDLLRRLLPSGAN 735 Query: 902 KLQRIIGLATFNRDRSETIDKQVRR 926 ++R R TI + R Sbjct: 736 AVERAYRELQVARGERPTIGELYRS 760 >UniRef50_B1YI12 Type III restriction protein res subunit n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YI12_EXIS2 Length = 774 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 118/610 (19%), Positives = 213/610 (34%), Gaps = 92/610 (15%) Query: 441 SELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFL 500 E+ QE+A+RA+ + + +G+ L +ATG GKT + FKRILFL Sbjct: 191 EEILPHRVQEEALRALRETMEEGRTRALTVLATGLGKTYLSAFFARD------FKRILFL 244 Query: 501 VDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD 560 +R L EQA +F+ N T +D+ ++ T + +VQ+L + Sbjct: 245 AHQRELLEQAERSFKKVESNWQTA-----FYIGSDRTNDEQTDVLFGSVQTLSQNRH--L 297 Query: 561 EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTA 619 E +D I++DE H +Y+++L HF+ + LTA Sbjct: 298 ERFAQDYFDLIIIDEFHHA-------------------AAKSYQKVLAHFEPRFLLGLTA 338 Query: 620 TPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ 679 TP G VY L D + Q+ +A +L+ Sbjct: 339 TPDRMD----GADVYA-----------LCDNNVAFQMHFTSAINEGFLTPFHYYGIHDVI 383 Query: 680 GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADM 739 + + ++ + + +R V + KT+ FC + A+ Sbjct: 384 DYSQLRRM--GRKYDAMELEQA----QIDRTVSENIYAAWSKHRQTKTIGFCSSIRQAEY 437 Query: 740 VVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTG 799 + + R +I +TG ++Q ++ IV TVDL G Sbjct: 438 LAQTFREM---------GHQVIALTGQTINRRERIQEF-----EQGTVEIVFTVDLFNEG 483 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLES----VD 855 VDIP + ++F R S +Y Q GR RL E K+ I D + Y +E+ + Sbjct: 484 VDIPKVDTLLFCRPTESIAIYTQQIGRGLRLANE--KSHCVIIDLIGNYKNVETKLMLLG 541 Query: 856 TMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRD 915 T++ + R E T + R + + + + + L R Sbjct: 542 TVKDKLKRGDKEPITPPKGCIIEFDTQALNIIHRMRQPNQRKLRLIESYEQLKLDLGRRP 601 Query: 916 RSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP--HWSAEVFNKLPGFIARLEK--- 970 I + Q+ ++ + L+E+G E ++ I ++EK Sbjct: 602 TYIEIGQLTAVPTGYKQE-----WSSYVGFLKEQGELTDEEIETYDANRELIEQVEKTVM 656 Query: 971 --------LKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQ 1022 L + + +EV Y + ++ +A + + N Sbjct: 657 NRSYKMVVLLAMLERGEGRWMEPITAEEVAPFFYEYLHAEKYREVKDAQGKVFENGYNES 716 Query: 1023 PALQAVINRP 1032 + + +P Sbjct: 717 KIVTLLKQQP 726 >UniRef50_A5DU02 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DU02_LODEL Length = 760 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 127/687 (18%), Positives = 234/687 (34%), Gaps = 103/687 (14%) Query: 407 SKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSE--LGLRYYQEDAVRAVEKAIVKGQ 464 S+ L L E ++ N + LR YQ A+ A++ A+ +G Sbjct: 92 SRPLNTLPLLRPLQEESKNDLPNTNSELQQLLSRTTPAFKLRDYQVQAIEAIKLALDQGI 151 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQSQRF---------KRILFLVDRRSLGEQALGAFE 515 + + +ATG GKT ++ L+ R KRIL L L +QA+ + Sbjct: 152 RRPAVVVATGGGKTVIFSNLIRELLDMLRTETTKSQSQNKRILVLAHTEELIKQAVQKIK 211 Query: 516 DTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDE 575 N +++ K D+ + VA+V S+ + + A + I++DE Sbjct: 212 AINPE---LNVRIEMRSARSK---DTDDVVVASVMSI--KHPRRLARFDPAHFTSIIIDE 263 Query: 576 AHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-------IALTATPALHTVQ- 627 H + Y++IL+HF A+ I TAT + + Sbjct: 264 CHHA-------------------PAATYQKILNHFGALLHDLHLSVIGFTATLSRFDKRS 304 Query: 628 ---IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN 684 IF + V++ + T + G L+ ++ E V Sbjct: 305 LGVIFDKVVFQRSLLTMIEAGELVKPVIHRPLVANLNLESVKRQ---------------- 348 Query: 685 DTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL 744 D++ + + FN ++ T + TL+FCV H + L Sbjct: 349 -----GSDYDTENLYNAMSAVGFNDKAVLSYMRLVEQTACKSTLIFCVNVQHCWELCSTL 403 Query: 745 RAA-FKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIP 803 ++ +Y +TG+ K R ++ F ++P ++ V++ T G DIP Sbjct: 404 QSHGINAQY----------VTGETSKSER--AAIVEDFKLGKIP-VLCNVEVFTEGTDIP 450 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIY----STLESVDTMRP 859 +I +I+ R SR L Q GR RL NKT + D VD L S+D Sbjct: 451 NIDSIILARPTLSRTLVTQSIGRGLRLH--KNKTCCHVVDLVDNTIEGIDVLPSLDGDHS 508 Query: 860 VVVRPKVELQTLVNEITDSETYKITEADG--RSFAEHSHEQLVAKLQRIIGLATFNRDRS 917 V K + E +S+ +A R+ E V ++ ++ + Sbjct: 509 QVSSAKANNKEKAKETLESDQVLGQDASKSPRTMTFAERELAVKRILKLHNGKVLTLGEA 568 Query: 918 ETIDKQVRRLDEL-------CQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEK 970 ++ G+ S+ G + K+ + L Sbjct: 569 VNPSSLNYMFQNDDVVGKFMLKNRLPWTMMGYHSKWGLPGRDDRYFILRKMKTDNSNLNS 628 Query: 971 LKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQD--FLEAFDSLVQRSPNAQPALQAV 1028 + + + DE + + + P D + E ++ +R+ Q A + Sbjct: 629 FELSEHRHGSHEAKMIYKDENLLKVLQQLEKEYPFDVKYAELCNNWARRATKKQVAW--L 686 Query: 1029 INRPRDLTRKGLVELQEWFDRQHFEES 1055 + R + + E + + F + Sbjct: 687 LTRLEKNMQAFIREKRMDITLEGFAQR 713 >UniRef50_C4YDS3 Putative uncharacterized protein n=1 Tax=Candida albicans RepID=C4YDS3_CANAL Length = 646 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 119/637 (18%), Positives = 232/637 (36%), Gaps = 94/637 (14%) Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILL 469 + + P L+ + W++ + LR YQ++A+ ++ +A G + + Sbjct: 2 VANYFTPRILVRYTKYKLSPIQSWYSKR-LIHSFALRDYQQEAIDSILEASESGVKRQAI 60 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 MATG+GKT ++ L + + L L + L Q+ TRIN D I Sbjct: 61 EMATGSGKTVVFSHLIPLL--KGKGTKTLVLEHTQELIAQSYDKI--TRINPDLRVGIE- 115 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 + + + + VA+VQSL T + + I++DE H Sbjct: 116 ---MAESRARLNDDVIVASVQSLA--TNKRFTKFNPDDFKTIIIDECHHAV--------- 161 Query: 590 ELQFRSQLDYVSAYRRILDHFDA-------VKIALTATPALHTVQIFGEPVYRYTYRTAV 642 Y++IL HF A I TAT A Q+ AV Sbjct: 162 ----------APTYQKILKHFKADTKNTNINVIGFTATLARADKQML----------KAV 201 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 D + I + + + +R++ ++D +D++ + Sbjct: 202 FDRIAFQRSLATMIFNKELAS--FKASKLYFKRLN-----LSDVKMKGKDYDPKALYNAV 254 Query: 703 VIPAFNRAVCNELTNYLDPTGSQK-TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 + N + L Y++ K TLVFC+ H V L+ ++ + Sbjct: 255 LKAGVNEHL---LLAYMELEKEYKSTLVFCINVEHCREVCVLLQKQ------GVDARYVT 305 Query: 762 KITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 T ++++ +T++ F + + P ++ V + G DIP+I +I+ R +S+ L Sbjct: 306 SKTSNSER-----KTIVEDFKQGKFP-VLCNVTVFAEGTDIPNIDSIILARPTKSKPLMI 359 Query: 822 QMKGRATRLCPEVNKTSFKIFDCVDIYS---TLESVDTMRPVVVRPKVELQTLVNEITDS 878 QM GR RL E K+ + D V I L+++ + + ++ + T E D Sbjct: 360 QMIGRGLRLHKE--KSHCHVVDLVGIMDENLELKAILEGKQLQMKKAKDGTTSKIESRDQ 417 Query: 879 ETYKITEADGRSF--AEHSHEQLVAKLQRIIGLATFNRDRSE-------TIDKQVRRLDE 929 Y + ++ A H + + +L+ + GL F S+ + + + Sbjct: 418 VNYFENDRISKTIECALQIHSKNIVELRSVDGLELFREYMSDVGVVREILSEADLPWVSL 477 Query: 930 LCQDAAGVNFN-GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDID 988 GV +++ + E FI ++ + + L++ Sbjct: 478 YDNSVWGVGGRYNTLFLIKKITGYGQTEYQLTYNKFIKEDFSTYQELEFIGKSNNVLELL 537 Query: 989 DEV-------VSVKSLYGDYDTPQDFLEAFDSLVQRS 1018 E+ V + Y D++ P ++ + S + Sbjct: 538 RELAERFPEDVRHVASYRDFERPCEY--SQVSFIMTH 572 >UniRef50_B0CPP8 Predicted protein n=4 Tax=Agaricomycetes RepID=B0CPP8_LACBS Length = 635 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 92/470 (19%), Positives = 165/470 (35%), Gaps = 59/470 (12%) Query: 444 GLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQR---FKRILFL 500 LR YQE + A +A+ G I +++ TG+GKT ++++ RL+ S R L + Sbjct: 27 VLRPYQEQCLDACLEALASGVSRIGVSLPTGSGKTTVFVSLLSRLVPSAWNPVATRSLII 86 Query: 501 VDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD 560 V+ L Q+ +I+ + +AT Q+L ++ + Sbjct: 87 VNSVELARQSASQVASLFPQWSV-----EIEQGAKYKASGFADVTIATYQTL--KSAERL 139 Query: 561 EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA---VKIAL 617 + ++VDEAH +YR++L HF L Sbjct: 140 AKFDPHKLKAVIVDEAHHA-------------------AAPSYRKVLAHFHPDIKHPDPL 180 Query: 618 TATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 A P+ P+ ++ + DG + + R+ E + V S Sbjct: 181 FAAPSPPHR----IPIVGFSATFSRHDGLALGSIFERIVYHRDFLEMIKEQWLCPVRVTS 236 Query: 678 PQGEVINDTLE---DDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 + + ++ DF + N V + + + TLVFCV Sbjct: 237 VRASIDLKSVTINTRTGDFNPTSLAHVINTETINELVVKTWID--RASTRKSTLVFCVNV 294 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 AH + + R I + + ++ F P ++V Sbjct: 295 AHVHTLTQSFRQFGVDARYLHAGTPIA-----------ERKALVAMFKAGHFP-VLVNCA 342 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV 854 +LT G DIP+I ++ R RSR ++ QM GR RL P +K I D V S + V Sbjct: 343 ILTEGADIPNIDCVLIARPTRSRNVFAQMIGRGMRLSPNTDKGDCHIIDLVGSLSRMSGV 402 Query: 855 DTMR------PVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQ 898 ++ P + + + + T+ T+ + + E+ Sbjct: 403 VSIPSLLGLNPAEMDIEDKSLESLEARASDSTFPDTDVPTPTSITYMEEE 452 >UniRef50_A1SXM9 Type III restriction enzyme, res subunit n=4 Tax=Gammaproteobacteria RepID=A1SXM9_PSYIN Length = 967 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 102/540 (18%), Positives = 184/540 (34%), Gaps = 88/540 (16%) Query: 383 REYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPG--- 439 +Y ++ + + +R N A P H+ + +K Q+ + +PG Sbjct: 155 HDYLPPRTSREALEFNYIRSAFNEIFAHPLVHKLDHDWISAYLRRRKMMQFVSVDPGSPP 214 Query: 440 --MSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRI 497 + + Q +A+ A+ K+ G + L+ +ATG GKT A + +L + KRI Sbjct: 215 EYIEPATPNHIQIEALTALVKSREIGFKRGLVVLATGMGKTWLAAFDVLQL----KAKRI 270 Query: 498 LFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 LF+ R + QA F + + + + A+VQ++ + Sbjct: 271 LFVAHREEILLQAQRTFAQLMPEKSS-------GFYNAQNRQKGADVLFASVQTIGRENH 323 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIA 616 + +D +VVDE H Y +L +F+ + Sbjct: 324 --LQQFSKDHFDYVVVDEFHHAS-------------------APVYSNLLAYFNPDFLLG 362 Query: 617 LTATPALHTVQIF-----GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGE 671 LTATP VY + D L P + + Y Sbjct: 363 LTATPERTDQSDILCLCDNNLVYERNLTQGIDDKIL----APFKYYGIWDESVNY----- 413 Query: 672 QVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFC 731 + F+ + + + + QKTL FC Sbjct: 414 ------------QAIPWRNGRFDPESIDNQFATQKRASHILKKWHQF----KQQKTLAFC 457 Query: 732 VTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVV 791 ++ HAD + E +A IK K + +T+ L ++ Sbjct: 458 ISVKHADYMAESFN------------NAGIKAVSVHSKSEIRRNEALTQLQNGTL-EVMF 504 Query: 792 TVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTL 851 +VDL G D+P++ I+ LR S+IL+ Q GR RL NKT + D + + + Sbjct: 505 SVDLFNEGTDLPALDTILMLRPSNSKILFLQQLGRGLRLH--KNKTHLVVLDFIGNHHSF 562 Query: 852 ESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLAT 911 + +P + + L+ ++ + + + +QL AK QR + Sbjct: 563 LN----KPYALFGSSTIPVLIKKVKEDKLADGCFVNYDIEITQFWKQL-AKQQRTTAIED 617 >UniRef50_B0SD57 DNA or RNA helicase of superfamily II n=5 Tax=Bacteria RepID=B0SD57_LEPBA Length = 1046 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 95/450 (21%), Positives = 169/450 (37%), Gaps = 52/450 (11%) Query: 409 ALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEIL 468 + + + + + +EL R YQE + + G + L Sbjct: 280 EYQRFDSKADFNRFKNALDTYKKFDSIPSAFFAELTPRVYQERILEELIAERRLGNNKNL 339 Query: 469 LAMATGTGKTRTAIAMMFR-LIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSI 527 + ATGTGKT + R I + +L++ R+ + EQAL F + F S+ Sbjct: 340 IVAATGTGKTVISAFDYRRYSIINNSKPSLLYIAHRKEILEQALSCFRMV-LQDQNFGSL 398 Query: 528 FDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQT 587 F + G+ ++ A++QS+ + Q + + + ++ I++DE H Sbjct: 399 F-VDGINPFSGTEAPLHIFASIQSINSK--QIWKILGKSFFNFIIIDEVHHSS------- 448 Query: 588 EGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQ-IFGEPVYRYTYRTAVIDG 645 S+YR I F + + LTATP + I + YR T + + Sbjct: 449 ------------ASSYRSIFSEFTPEILLGLTATPERMDGESILPDFNYRITSEIRLPEA 496 Query: 646 FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIP 705 P ++ Q++ D +E + + D + Sbjct: 497 LEERLLCPFHYFG--------ITDNIQLKGEQFWKNGKFDLIELENVYTGDD----ITAK 544 Query: 706 AFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITG 765 + + +Y + K + FCV+ HA + E F+K E I G Sbjct: 545 QRVNLIYKSINHYQPNSEELKAVGFCVSVKHAKFMAE----NFQKLGIDAET-----ILG 595 Query: 766 DADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 + D + R+ I F ++++ I+ TVD+ GVDIP I ++FLR S ++ Q G Sbjct: 596 ETDSETRR--QRIIDFKQKKI-KILFTVDIFNEGVDIPEINTVLFLRPTESLTIFLQQLG 652 Query: 826 RATRLCPEVNKTSFKIFDCVDIYSTLESVD 855 R R P NK + + D + +D Sbjct: 653 RGLRHAP--NKDALTVLDFIGQTHKKYRID 680 >UniRef50_A3EQ89 Putative helicase n=1 Tax=Leptospirillum rubarum RepID=A3EQ89_9BACT Length = 1054 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 137/706 (19%), Positives = 237/706 (33%), Gaps = 103/706 (14%) Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVE-KAIVKGQQEILLAMAT 473 R ++ E+L + + + ++ +Q++ + +E + V G L+ AT Sbjct: 292 RKADVQEILARSRNRDDS---SDSLPFDIRPYPFQQEILDRLEVEREVNGSFRNLVVSAT 348 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGL 533 GTGKT A R + + LF+ R+ + EQ+L F + F ++ Sbjct: 349 GTGKTVIAAFDFRRFREKRPDATFLFVAHRKEILEQSLKHFRHI-LEDRNFGELWVAGSR 407 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 + A++QSL + L + + R+D +V+DE H G Sbjct: 408 PVHV-----RHVFASIQSLDRAEL---DRISPERFDYVVIDEIHHG-------------- 445 Query: 594 RSQLDYVSAYRRILDHFDA-VKIALTATPALHTV----QIFGEPV-YRYTYRTAVIDGFL 647 YRR+L+ + + LTATP + F + A+ L Sbjct: 446 -----MAPTYRRLLETLKPRILLGLTATPERSDGLDVRRYFNDRTAAEIRLGEAIDRNLL 500 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV-IPA 706 P ++V+ + + E ++ + + L Sbjct: 501 C----PFHYFGIT----------DEVDYRNLRWER--------GQYDRRELEKVLTGNDL 538 Query: 707 FNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD 766 NR+V L Y + + FCV HA+ + + A I I Sbjct: 539 RNRSVLRALREYCPDLSGVRGIGFCVGVRHAEEMSDLFNRA-----------GIPSIALS 587 Query: 767 ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 AD + R + L V VDL G+DIP++ ++FLR S ++ Q GR Sbjct: 588 ADSSREVRDAVSARISSGEL-TFVFVVDLYNEGIDIPAVDTVLFLRPTESLTIFLQQLGR 646 Query: 827 ATRLCPEVNKTSFKIFDCVD-IYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITE 885 R KT + D V ++ + + + +P +Q + E Sbjct: 647 GLRQR--WGKTHLTVLDFVGHMHEKFDFSSRLSALSGQPAYRIQKEIEEGFPHLPAGCVI 704 Query: 886 ADGRSFAEHSHEQLVAKLQ-RIIGLATFNRDRSETID--KQVRRL-------DELCQDAA 935 R H E + L R G RD + ++ +R + Sbjct: 705 QLERVARAHVLENIRKALSFRRHGWLEKVRDMTADLNRPPHLREFFRAYHPPLSVLYRKE 764 Query: 936 GVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVK 995 G F G+ L E G N+ L D + + DD V ++ Sbjct: 765 GKVFRGWKRFLVEAGVFPDFADPNEATLTRGIGRMLHLSAGRYPDLLMAMAGDDAVEELE 824 Query: 996 SLYGDYDTPQDFLEAFDSLVQRSPNA--QPALQAVINRPRDLTR--KGLVE-LQEWFDRQ 1050 + + + FL A +L +P + + R R L E L+ D Sbjct: 825 GRFPE----RQFLMAHYALWDETPEKMGLERISETVQRLRKNPVLCDELEEMLELAKDLA 880 Query: 1051 HFEESSLRKAWKETRNEDIAARLIG-HIRRAAVGDA-LKPFEERVD 1094 F + +R ED+ + G + R + A L F+ RVD Sbjct: 881 LFPVLGI------SRTEDVPLDVHGTYTRNEILAAAGLFGFDRRVD 920 >UniRef50_Q1NXV3 Helicase-like:Peptidase S24, S26A and S26B:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NXV3_9DELT Length = 1196 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 95/477 (19%), Positives = 152/477 (31%), Gaps = 75/477 (15%) Query: 381 NGRE--YRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP 438 NG E YR G R + ++ ++ + + Sbjct: 344 NGLEWNYRVDYPGDDGFLEARHRFETLFANPATVELT-DDWIDRYQARRIVHALPISPGS 402 Query: 439 GMSELGLRYY--QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKR 496 E Q++A+ A+ +G + L+ MATG GKT A +R Sbjct: 403 DEQEAPPEPTELQKEALAALAATRREGYRRGLVVMATGLGKTWLAAFDAGHCT----ARR 458 Query: 497 ILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRT 556 +LF+ R + +QA F R + + + A++Q+L + Sbjct: 459 VLFVAHREEILQQAAATFLRIRPRA-------RAGFYLGRQRDAEVDLLFASIQTLARS- 510 Query: 557 LQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKI 615 + +D +VVDE H + YRR+L HF+ + Sbjct: 511 -EHLARFAADHFDYVVVDEFHHA-------------------AAATYRRLLRHFNPRFLL 550 Query: 616 ALTATPALHT-VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 LTATP I Y + DG P G+Y + E Sbjct: 551 GLTATPERTDQSDILSLCDDNLVYSCNLADGINAQLLAPFHY------YGIYDQSVDYRE 604 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 G F+ L A R + G ++TL FCV+ Sbjct: 605 IPWRNGR-----------FDPDALVNKLATLARARHALEQW----RQQGGKRTLAFCVSV 649 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 HA+ + ++ A AI + + R RL ++ VD Sbjct: 650 RHAEFMADQFSQAGIAAAAVYAGAAISR------------GDALARLRDNRL-RVIFAVD 696 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTL 851 L GVD+P I ++ LR S+IL+ Q GR R K + D + + Sbjct: 697 LFNEGVDLPEIDTVMMLRPTDSKILFLQQLGRGLRRVE--GKEHLVVLDFIGNHRGF 751 >UniRef50_C9M6T4 DNA/RNA helicase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6T4_9BACT Length = 551 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 126/555 (22%), Positives = 210/555 (37%), Gaps = 93/555 (16%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQ-QEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLV 501 + LR YQ+ AV A+E+ G ++ LL + TGTGKT + Q+ R+L L Sbjct: 1 MELRPYQQAAVTAIEEGWRDGSLRKSLLVLPTGTGKTVVFCTVAR---QTTGDGRVLILA 57 Query: 502 DRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE 561 R L EQA + I + D + V +VQ+L + ++ Sbjct: 58 HREELIEQAREKYYRIT------GEIAAKEKAHCSCFGDPASVVVGSVQTL--QNVKRLS 109 Query: 562 PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTAT 620 P + I++DEAH + Y+R+L+HF A + +TAT Sbjct: 110 KFPADYFSTIIIDEAHHALAVG-------------------YQRVLEHFPRARVLGVTAT 150 Query: 621 P----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERI 676 P + + F Y Y+ ++A+ DG+L PI+ +T + V Sbjct: 151 PDRGDKRNLAEYFDGVAYEYSLKSAIADGYLC----PIRALTAPLRLDV----------- 195 Query: 677 SPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAH 736 V + DF+ A+ + + + + + + + ++KT+VF + Sbjct: 196 ---SNVKTSRSKFGNDFDRAELS--VALEEYLPQIAQCIK---ENASARKTVVFLPLVSI 247 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLL 796 A E AA + ++ G++D A + F+K +++ LL Sbjct: 248 AQQFQRECEAAGLE---------AREVNGESDNRAE----TLAWFDKAGPGSVLCNAMLL 294 Query: 797 TTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT 856 T G D PS+ +V LR + R LY QM GR TR+CP K + I D + + + D Sbjct: 295 TEGWDCPSVDCVVVLRPTKVRALYCQMIGRGTRICP--GKENLLILDFLWLS---DKHDL 349 Query: 857 MRPV-VVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII-GLATFNR 914 +P ++ + Q L+ + ++ E + EA + E E + Q + L+ R Sbjct: 350 CKPACLITDDEKAQRLIAQKSEDEQIDLMEAADEAEKEAGEETEKERRQSLADSLSEAMR 409 Query: 915 DRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTD 974 ID V F + P + E A LEK Sbjct: 410 HPKMLIDPLVYEC--------------FIGEKLDYEPTFKWEYLPVTEKQRAFLEKNGIS 455 Query: 975 INNLNDAPIFLDIDD 989 NL I D Sbjct: 456 TENLKRGSATRIIGD 470 >UniRef50_C8P3G7 Helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3G7_ERYRH Length = 950 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 113/615 (18%), Positives = 224/615 (36%), Gaps = 116/615 (18%) Query: 381 NGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGM 440 +G+ Y+ ++ +W +N + W +E E Q + Q N Sbjct: 161 DGKIYKDSIDEFDYLW-------KNSTVLTNSW--IDEYEEKYNIHQQIKEQIEDLNQFE 211 Query: 441 SELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFL 500 ++ Q +A+ ++ +G + L+ ATGTGKT A + ++ + K++LF+ Sbjct: 212 EKIKPNKMQSEALENLKNFRKQGATKALVISATGTGKTYLAAFDV----KAIKPKKMLFI 267 Query: 501 VDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD 560 + R + + A+ F+ + + + + +D T+Q++ + Q+ Sbjct: 268 IHREQVAKDAMNTFQSIISD-------RSMGLFSGNYKDDQFDFLFTTIQTISRP--QNL 318 Query: 561 EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTA 619 + +D IV+DEAHR ++Y ++++F + +TA Sbjct: 319 QKFKQNEFDYIVIDEAHRSV-------------------ANSYLNVMEYFKPKFFLGMTA 359 Query: 620 TPALHT-VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 TP + +F Y Y + + P + + Sbjct: 360 TPERSDSLNVFELFDYNIAYEIRLQKALEENMLVPFHYFG--------------ITDLQI 405 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHAD 738 GE+IND + Q LV + Y K L+FC TN A Sbjct: 406 DGEIINDHSQFGQ----------LVSEDRIEHILKYTKYYGHCGNKLKGLMFCSTNQEAS 455 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 + ++L + I ++G+ ++ R+ ++ + + N ++TVD+ Sbjct: 456 ELSKKLN---------IRGIRTISLSGENSQEERE-NAIVRLTSDDGDLNYILTVDIFNE 505 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMR 858 G+DIP I +V LR S I++ Q GR RL NK + D + YS + M Sbjct: 506 GIDIPEINQVVMLRSTESSIVFIQQLGRGLRLS--KNKDYVVVIDFIGNYSN----NYMI 559 Query: 859 PVVVRPKVELQT--------------------LVNEITDSETYKITEADGRSFAEH---S 895 P+ + ++ ++ YK+ + S +H Sbjct: 560 PIALSGNRSYSKDEIKKYLIEGKSTIPGSSTVEFDKTALTQIYKVIDNTNFSATKHLRLE 619 Query: 896 HEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSA 955 + L +L RI L F ++ +ID Q+ ++ + + L++ + Sbjct: 620 YNNLKYRLGRIPALQEFITEK--SIDPQLFIKSS--------SYGNYFTFLKKIDTTYEG 669 Query: 956 EVFNKLPGFIARLEK 970 + + G + L K Sbjct: 670 TLSDYEIGILTMLSK 684 >UniRef50_C0VZ55 ATP-dependent helicase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZ55_9ACTO Length = 1087 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 102/570 (17%), Positives = 189/570 (33%), Gaps = 82/570 (14%) Query: 393 SGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDA 452 W + K ++ + + ++ F + + E+ +Q+ Sbjct: 275 DSYWNSPEYELYEPDKDAEKFDEAIRRAKGYNTATALNDRSFIEEFSLLEVTPFEHQKIM 334 Query: 453 VRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQ-----SQRFKRILFLVDRRSLG 507 + +E G LL ATGTGKT A RL + + R R LF+ R+ + Sbjct: 335 LSELEAERENGHHRNLLVAATGTGKTVIAALDYKRLRERFMKNTGRSPRTLFVAHRQEIL 394 Query: 508 EQALGAF---EDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 +QA F G + F + L + + + A++QSL +TL+ P Sbjct: 395 KQARKTFIDVVKVSNLGISTTDNFALNSLDSRLLAEHGNLVFASIQSLHSKTLEG---FP 451 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV-KIALTATPAL 623 +D I++DE H Y+++++HF + LTATP Sbjct: 452 NDFFDLIIIDEFHHAS-------------------APTYKKLIEHFAPQELLGLTATPER 492 Query: 624 HTV-----QIFGEPVYRYTYRTAVIDGFLIDQDPPIQII---TRNAQEGVYLSKGEQVER 675 + F R + D D P V LSKGE Sbjct: 493 GDGTNVAVEFFSG---RIASELRLWDALNADLLVPFHYFVNSDDTDLSKVRLSKGE---- 545 Query: 676 ISPQGEVINDTLEDDQDFEVADFNRGLV-IPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 ++V N V + + + + + + + FC + Sbjct: 546 -----------------YDVKSLNDLYVGNEHRADIIMRAIRDKVPSPDTMRAICFCASV 588 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 HA+ + + + +T + T IT + L ++ VD Sbjct: 589 EHANYMADCFNRV---------NLPAAAVTAKTE----NRDTHITALREGTL-RVICAVD 634 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST-LES 853 + GVDIP + ++ LR +S ++ Q GR R K + D V + + Sbjct: 635 IFNEGVDIPEVDTLLMLRPTQSSTIFLQQLGRGLR--RSFGKDLLTVLDFVGNQNKDFKF 692 Query: 854 VDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQ-RIIGLATF 912 + + + L + E S + + + + L L+ + L+ Sbjct: 693 DAKFKVLSGNSRGRLIKSIEEGFTSLPPGVYVEFDKVSQDIVLKSLKRTLKPTMKNLSQE 752 Query: 913 NRDRSETIDKQVRRLDELCQDAAGVNFNGF 942 R+ +++ D +V R L + N + Sbjct: 753 LRELAQSTDLEVLRRFSLAEFLEFSNRELW 782 >UniRef50_B7GIH0 N-terminal HKD family nuclease fused to DNA/RNA helicase domain n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GIH0_ANOFW Length = 1059 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 102/605 (16%), Positives = 197/605 (32%), Gaps = 87/605 (14%) Query: 381 NGREYRATMKTKSGIWYRDVRDTR-----NMSKALPEWHRPEELLEMLGSEPQKQNQWFA 435 NG E + S + + N + + + E + +K+N+ Sbjct: 240 NGHELNVKLPDTSFLPIYEHTKEMFEKIWNRADTISLDYAFIETYQ--QQTIRKENKPLV 297 Query: 436 DNPG-----MSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQ 490 P S + Q+ A++ +E G + ++ ATGTGKT A + + Sbjct: 298 AEPKGEYNVTSSVKPNDMQKKALKNLEHTRKNGNTKGVIIAATGTGKTYLAAFDV----K 353 Query: 491 SQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQ 550 + K++LF+ R L ++A+ F+ N F I T + +TVQ Sbjct: 354 AYNPKKLLFIAHREELLDKAIETFKHVIENDHLFGKI------TGTVKQFDKPYLFSTVQ 407 Query: 551 SLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF 610 SL K ++ +D I++DE H Y++++ +F Sbjct: 408 SLSK--DETLNRFKQHEFDYIIIDEFHHA-------------------EAPTYQKVIRYF 446 Query: 611 DA-VKIALTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLS 668 + LTATP + + Y + + P G+ Sbjct: 447 RPKFLLGLTATPERMDGRDVLAICDHNVVYEIRLREALDAQLLAPFHYF------GISDR 500 Query: 669 KGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTL 728 + + G F+ A + L + + Y L Sbjct: 501 TVDYSQIPLKNGM-----------FDEALLVKALKTNERTDFIIEMIRTYSYDGDRIVGL 549 Query: 729 VFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLP- 787 FCV HA + E+ +TG+ + R + +I R P Sbjct: 550 AFCVNIDHAKYMSEQFNK---------RGYCTTYLTGEHSVEYR--EQIIKRLENPDDPL 598 Query: 788 NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDI 847 + TV++ G+DIPS+ ++FLR S ++ Q GR R K + D V Sbjct: 599 EFIFTVNIFNEGIDIPSLNLLLFLRPTESSTVFIQQLGRGLRKVE--GKEFVTVLDFVGN 656 Query: 848 YSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII 907 Y M P+ + ++ + + E + V + + + Sbjct: 657 YQK----SFMIPLALAGQLNDKAF--DKDSLRVAITHEFADLPGGAYVDLDPVTQREILD 710 Query: 908 GLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIAR 967 + + + ++ ++ L + ++ G + E+ P + K ++ Sbjct: 711 RIDSIKMNSTDM----LKMLYQQFKNELGRSPEILDFLYYEQSPSLTF-FIYKYRSWVKT 765 Query: 968 LEKLK 972 EK+ Sbjct: 766 KEKMN 770 >UniRef50_C0XQJ4 Possible helicase n=2 Tax=Corynebacterium RepID=C0XQJ4_9CORY Length = 943 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 113/557 (20%), Positives = 211/557 (37%), Gaps = 77/557 (13%) Query: 417 EELLEMLGSEPQKQNQWFADNPGM-------SELGLRYYQEDAVRAVEKAIVKGQQEILL 469 E+ ++ +++ F D E+ Q +A+ +++ I G++ ++ Sbjct: 143 EDWIDQYEKRRKQRTVIFDDVSQPISLSDDGEEILPNLMQTEALENLQRVIDAGERRAII 202 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 ATGTGKT + + ++ + +R+LF+ R + +A F+ T D Sbjct: 203 ISATGTGKTILSALAVRQI----KPRRVLFVAHREQILNKAAEEFQRVLACPPT-----D 253 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 I + + E + ++ AT+QSL + + + ++D ++VDE HR Sbjct: 254 IGFIVGQRKEANQRLVFATIQSLGRG--DTLSEISPKQFDLVIVDEVHRSG--------- 302 Query: 590 ELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHT-VQIFGEPVYRYTYRTAVIDGFL 647 +Y+++L+HF A + LTATP +F Y Y + D Sbjct: 303 ----------AESYQKVLNHFRADFTLGLTATPERTDGFNVFELFDYNVPYEIRLEDALE 352 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAF 707 P + E + G VI+D Q L P Sbjct: 353 NHMLVPFDYYGVSDYESAF-------------GSVISDNSTLQQ----------LAAPER 389 Query: 708 NRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDA 767 + + +Y GS K L+FC +NA A + + L P I ++G Sbjct: 390 VHHLAKIIQDYSFARGS-KGLIFCSSNAEAAALSKGLNTESVHGRPLR----TIALSGGD 444 Query: 768 DKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 + R + + + + + + ++TVD+ G+DIP + +V LR +S I++ Q GR Sbjct: 445 SIETR--ENTVEKLAQGEI-DYILTVDIFNEGIDIPPVNVVVMLRSTQSSIVFTQQLGRG 501 Query: 828 TRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEAD 887 R K S ++ D + Y+T + + + + + T+ + A Sbjct: 502 LRKY--AGKRSLRVIDVIGNYAT--NFLVAVALTGDRSGSKDVIKEGLHRTRTHPLAGAS 557 Query: 888 GRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVR--RLDELCQDAAGVNFNGFASR 945 SF S +++V LQ+ +A R ++ Q R R+ L + N F Sbjct: 558 TVSFDRVSMQRIVESLQK-ARIADRKAKREAILNLQYRLGRIPSLVDFENHESMNPFILA 616 Query: 946 LREKGPHWSAEVFNKLP 962 + + N L Sbjct: 617 ATDNNASNYWSLLNALK 633 >UniRef50_D1BZV1 Type III restriction protein res subunit n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BZV1_XYLCX Length = 980 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 110/565 (19%), Positives = 206/565 (36%), Gaps = 79/565 (13%) Query: 440 MSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILF 499 + + Q DA+ A+ G++ ++ ATGTGKT + + ++ +R+LF Sbjct: 230 PTTITPNRMQRDALNALAAVRDSGEKRAIVISATGTGKTILSALDV----RAVNPRRLLF 285 Query: 500 LVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS 559 +V R + ++ + + D LT + + + ATVQ+L + + Sbjct: 286 VVHREQILDRTIQEYRKVL-----GGDASDYGKLTGSSKDFAARYLFATVQTLAQPDV-- 338 Query: 560 DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV-KIALT 618 P +D ++VDEAHRG +RR++ HFD V + +T Sbjct: 339 LARFPADVFDYVIVDEAHRGGS-------------------PTHRRVIGHFDPVFMLGMT 379 Query: 619 ATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 ATP G V+ L + P +I A + L+ Sbjct: 380 ATPERTD----GFNVFE-----------LFHYNVPYEIRLNRALDEDMLTPFHYY----- 419 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHAD 738 G +D ++D + LV P + L Y + + L+FC A Sbjct: 420 -GITDATFDDDTTVDALSDLD-LLVSPQRVSHLIWALETYAQAGTAPRGLIFCSRTQEAR 477 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 + + L + + P +TG + R + + + L + ++TVD+ Sbjct: 478 RLSDVLNRSLLRGRPLR----TASLTGVDSIEHR--ERTVEQLESGEL-DYILTVDVFNE 530 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMR 858 GVDIPSI ++ LR+ +S I++ Q GR R C + K + D + Y+ + + Sbjct: 531 GVDIPSINQVIMLRQTQSAIVFVQQLGRGLRKCDQ--KEYLVVLDFIGNYAN----NFLI 584 Query: 859 PVVV--RPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDR 916 P+ + + ++L + E + +Q V + R L R + Sbjct: 585 PIALFGDDSLNKESLRQNLIAVEEAGALPGLSSVQFDKIAQQRVLESIRDTKLDDMARLK 644 Query: 917 SETIDKQVRRLDELCQDAAGVNFNGF-ASRLREKGPHWSAEVFNKLPGFIARLEKLKTDI 975 + + ++ G + R P A P + L K + D+ Sbjct: 645 AAVVA---------MRNRVGAVPRLWDFFRFESVDPVVLATKKEHYPALVRSLLKEEIDL 695 Query: 976 NNLNDAPIFLDIDDEVVSVKSLYGD 1000 + + + + EV+ K + Sbjct: 696 SETS-SRALQLLSHEVLPAKRGHEF 719 >UniRef50_C2RWF5 Type III restriction protein res subunit n=1 Tax=Bacillus cereus BDRD-ST24 RepID=C2RWF5_BACCE Length = 788 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 149/632 (23%), Positives = 239/632 (37%), Gaps = 112/632 (17%) Query: 247 FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLF--VG 304 +ID+ L+ GW L + E N+ + D VL Sbjct: 15 KIIDS-LKAVGWVVGDSLLYRPRYTLTEEQKNEFGKSFIEP----------DIVLQDPYS 63 Query: 305 LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQ 364 + +AV+E K + + DN L+ L S + V Y+TSW+ Sbjct: 64 KEILAVIENKLE--NEKKAFAQLR-----IDNMILKPRFLYACSKERVLF----YDTSWK 112 Query: 365 DTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLG 424 + + TN +K K+ ++L + Sbjct: 113 GLEAGEYKR------TNSFLSYEEIKIKN-----------------------KQLRKRNA 143 Query: 425 SEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAM 484 + A + RYYQ D + + G++++L+ MATG GKTRT +A+ Sbjct: 144 HTEVTIDTSIAGGYDSNVGKDRYYQLDCINTIIDRFKTGKEKMLVHMATGLGKTRTTVAL 203 Query: 485 MFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKI 544 L+Q + K+ILF+VDRR L +QAL + I T+ + I Sbjct: 204 TKALLQHELAKKILFVVDRRMLAKQALDDGFSLISRDYSAARI----KTTNFRQQKHASI 259 Query: 545 HVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYR 604 HV + SL +P YD I+VDE HR ++++ Sbjct: 260 HVIVIDSL----EMIFSSIPSNFYDLIIVDECHRSISVNRKV------------------ 297 Query: 605 RILDHFDAVKIALTATPA-----------------LHTVQIF----GEPVYRYTYRTAVI 643 +LDHF K+ LTATP L T ++F GEP Y++ + Sbjct: 298 -VLDHFICPKLGLTATPRTAVAKEGANVSEEDLAILDTYKLFGCEDGEPDYKFDLERGIE 356 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV 703 +GFL D +I T +E +G +E + L ++ ++ R + Sbjct: 357 EGFLAPYDVL-EIKTYLTKEA--EDEGIPIEYVLNPETRERIDLPKEKRLKLKQLERKYL 413 Query: 704 IPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI 763 + E+ +K ++F V+ H + E L F + A I Sbjct: 414 SEERCMRIAEEIKANTQY--GEKVILFGVSQPHCLYLTEALNKVFNDNGSDNVNYAEAVI 471 Query: 764 TGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 + + + + + +F K + P IVV+VD+++TGVD+P + I F S Y Q Sbjct: 472 SDNEAMN----EFIKNKFKKPNQKPYIVVSVDIMSTGVDVPCVRYISFASLTDSVGKYIQ 527 Query: 823 MKGRATRLCPEV-NKTSFKIFDCVDIYSTLES 853 M GR +RL PE K SF+I D V + S L Sbjct: 528 MVGRGSRLDPEKSGKFSFRILDFVGLCSKLGD 559 >UniRef50_Q1WS72 DNA/RNA helicase, DEAD/DEAH box family n=14 Tax=Lactobacillus RepID=Q1WS72_LACS1 Length = 951 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 99/487 (20%), Positives = 191/487 (39%), Gaps = 74/487 (15%) Query: 436 DNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK 495 +N SE+ Q A++ +EK + + + + L+ ATGTGKT + + + K Sbjct: 203 NNKAKSEIVPNKMQMAALKELEKIVAEKKSKALVVSATGTGKTYLGAFAV----KEYQPK 258 Query: 496 RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKR 555 R LF+V R + ++A+ +F+ S L+ + K +T+Q++ + Sbjct: 259 RFLFVVHREQIAKKAMESFKKV-----IGGSGRLYGMLSGDRQDTQAKYIFSTIQTVSQ- 312 Query: 556 TLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VK 614 + + +P +D I++DEAHR +Y++I+ +F Sbjct: 313 -DKILDQLPSNYFDYILIDEAHRS-------------------AAPSYQKIMHYFKPDFW 352 Query: 615 IALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 + +TATP + VY L D + +I R+A E LS + Sbjct: 353 LGMTATPERMD----NQDVYA-----------LFDYNLAYEIRLRDALENKMLSPFHYIG 397 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 + D ED + R L P + + ++L Y LVFC Sbjct: 398 --------VQDYEEDGITVDETTNLRYLTAPKRVKYILDQLDYYGYSGLKVHGLVFCSRQ 449 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 A + + DA + ++D+ + + + R +E ++TV+ Sbjct: 450 DEALELAQAFT------------DAGHQAKALTNQDSNERRRAVVRELEEGKIEYIITVN 497 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV 854 L G+DIP + +V LR +S I++ Q GR R P K + D + Y Sbjct: 498 LFNEGIDIPCVNQVVMLRNTQSSIVFIQQLGRGLRKYP--GKDFVTVLDFIGNYKN---- 551 Query: 855 DTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNR 914 + + P+ + + +++ + + + +F E + E+++ L + + L + Sbjct: 552 NYLIPIALT-QDNSRSIDEAKAELRVPPVIDVSTINFTEIAQEKILQSLDK-VKLDSMKE 609 Query: 915 DRSETID 921 R+ D Sbjct: 610 LRTAYQD 616 >UniRef50_D2SCI9 Type III restriction protein res subunit n=2 Tax=Actinomycetales RepID=D2SCI9_9ACTO Length = 1035 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 100/446 (22%), Positives = 170/446 (38%), Gaps = 70/446 (15%) Query: 411 PEWHRPEELLEMLGSEPQKQNQWFADNPG-MSELGLRY--YQEDAVRAVE-KAIVKGQQE 466 E + P+ + L + +D P ++ L +R YQ++ + A++ + V G+ Sbjct: 282 FETYEPQRDGDRLREALAAERGGPSDLPIEITTLDVRPFGYQQEILEALDAERTVHGRWR 341 Query: 467 ILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNS 526 L+ MATGTGKT + RL +S R+LF+ R L Q+ GD F Sbjct: 342 NLVVMATGTGKTVVSALDFRRLRESGMVDRLLFVAHREELLTQSHSTLRHVLRQGD-FGE 400 Query: 527 IFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQ 586 +F + + P + + +VQSL + L +P + +D ++VDE H Sbjct: 401 LF----VGGQRPREWRHV-FGSVQSLNQLDLGELDP---SHFDVVIVDEFHHA------- 445 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQ----IFGEPVYRYTYRTA 641 S YRR+L+H V + LTATP FG Sbjct: 446 ------------EASTYRRLLEHLKPTVLLGLTATPERTDGADVRTWFGGRT---AVELR 490 Query: 642 VIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRG 701 + + + P Q + ++R+ + D E + D Sbjct: 491 LWEALEQNLLAPFQYFGVHDD--------VALDRLRWKRGRGYDVTELSNVYTGDD---- 538 Query: 702 LVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 R V + + ++ G + L FCV+ HA + + A Sbjct: 539 ----HRVRLVLQAVKDKVEDPGRMRALGFCVSIQHAQYMADRFTRA---------GIPSR 585 Query: 762 KITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 +T + ++ R R +R N++ TVDL G+DIP++ ++FLR S ++ Sbjct: 586 AVTSTSSREERAAALAALR---DRAVNVLFTVDLFNEGLDIPTVDTVLFLRPTESATVFL 642 Query: 822 QMKGRATRLCPEVNKTSFKIFDCVDI 847 Q GR RL +K + D + Sbjct: 643 QQLGRGLRLAE--DKACLTVLDFIGA 666 >UniRef50_C4ZJT0 Type III restriction protein res subunit n=5 Tax=Proteobacteria RepID=C4ZJT0_THASP Length = 1287 Score = 244 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 108/585 (18%), Positives = 182/585 (31%), Gaps = 93/585 (15%) Query: 379 STNGRE--YRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL----LEMLGSEPQKQNQ 432 T+G E YR G + R + + R EL +E + + Sbjct: 331 LTDGLEWNYRIEYPGDDGFL-----EARARFEEIFRDPRTVELTDAWIERYEARRVPPPR 385 Query: 433 WFADNPGMSELGLRYY--QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQ 490 + SE Q++A+ A+ + G L+ +ATG GKT A ++ Sbjct: 386 PIEPSAEESEKPPNPTPIQQEALAALTRTRHDGYLRGLVVLATGLGKTWLAAFDAEQI-- 443 Query: 491 SQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQ 550 +R+LF+ R + +QA F R I + + + A+VQ Sbjct: 444 --GARRVLFVAHREEILKQAADTFVRIRPRA-------RIGFYMGQARDTQVDVLCASVQ 494 Query: 551 SLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF 610 +L + E +D I++DE H YRR+L HF Sbjct: 495 TLGRNAH--LERFAPQHFDYIIIDEFHHA-------------------AAPTYRRLLAHF 533 Query: 611 DA-VKIALTATPALHT-VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLS 668 + LTATP I + G P Y Sbjct: 534 APQFLLGLTATPDRTDQSDILSLCDDNLVLDRNLFAGIEAGLLAPFHYFGVWDASVDY-- 591 Query: 669 KGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTL 728 + + F+ + L A R E Q+TL Sbjct: 592 ---------------EEIPWRNGRFDPEKLSNKLATLARARHALKEW----RKRAQQRTL 632 Query: 729 VFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPN 788 FCV+ HA+ + + R + + + + + + RL Sbjct: 633 AFCVSVRHAEFMATQFRLQGIEAAAVYAGSELAR------------GEALEQLAEGRLA- 679 Query: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIY 848 ++ +VDL GVD+P+I ++ LR S+IL+ Q GR R K + D + + Sbjct: 680 VIFSVDLFNEGVDLPAIDTVLMLRPTESKILFLQQLGRGLRRAE--GKERLVVLDFIGNH 737 Query: 849 STLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIG 908 + + + + L ET+++ G + + + Sbjct: 738 HSFLHKPQ---ALGQIGSGYKQLAEFARKIETHRLELPTGCYINFDLE---LIDFLKSLD 791 Query: 909 LATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHW 953 RD D RR +G N R+R + W Sbjct: 792 GDGVARDYEALRDGLGRRPTLAEFYRSGAN----LGRMRNEYESW 832 >UniRef50_B9W8D3 Putative uncharacterized protein n=4 Tax=Candida RepID=B9W8D3_CANDC Length = 654 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 93/511 (18%), Positives = 181/511 (35%), Gaps = 75/511 (14%) Query: 422 MLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTA 481 +L P+ + LR YQ+ A+ + ++ G + + MATG+GKT Sbjct: 10 LLSKCPKFSLPKMQNIRFSHSFPLRDYQQKAIDLILESSGSGVKRQAIEMATGSGKTVVF 69 Query: 482 IAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDS 541 ++ L + + L L + L Q+ + + ++ D Sbjct: 70 SHLIPLLKREG--AKTLVLAHTQELITQSRDKINKVNPDLKVGIEMGKVRSTPD------ 121 Query: 542 TKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVS 601 + VA+V SL + + I++DE H Sbjct: 122 DDVIVASVMSLARSN--RLARFDPDEFKTIIIDECHHAI-------------------AP 160 Query: 602 AYRRILDHFDA-------VKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPI 654 +Y +IL HF A I TAT A Q G V D + + P Sbjct: 161 SYLKILKHFKADTKDTDVHVIGFTATLARTDKQKLGT----------VFDKIVFQRSLPT 210 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 I + E ++ +S + + + + D++ + L N + Sbjct: 211 MIENKELAEF-------KISNVSIKNLNLTNVPKKGGDYDSSSLYLALNKVDINEKI--- 260 Query: 715 LTNYLDPTGSQK-TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARK 773 L Y++ K T++FCV H V + ++ ++ T ++ Sbjct: 261 LLAYMELAKDYKSTIIFCVNVEHCREVCGLFQQQ------GIDAQYVLGETSRIER---- 310 Query: 774 VQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE 833 + ++ F + + P ++ V + T G DIP+I +I+ R S+ L QM GR RL E Sbjct: 311 -EFIVEDFKQGKFP-VLCNVGVFTEGTDIPNIDSIILARPTMSQSLMIQMIGRGLRLHKE 368 Query: 834 VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAE 893 K+ + D V I + + + + + ++ E ++ + + Sbjct: 369 --KSHCHVIDLVGITKSSLVLKATLSGEEPQEKDKRRFTDQKNGEEDERLDDLEYI---- 422 Query: 894 HSHEQLVAKLQRIIGLATFNRDRSETIDKQV 924 S + L A+ + I+ A + ++ + K + Sbjct: 423 ESIKSLRARRKLIVERALYYYNQGASELKTI 453 >UniRef50_B9ZK35 Type III restriction protein res subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZK35_9GAMM Length = 1066 Score = 242 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 112/500 (22%), Positives = 170/500 (34%), Gaps = 76/500 (15%) Query: 423 LGSEPQKQNQWFADNPGMSE-----LGLRYY--QEDAVRAVEKAIVKGQQEILLAMATGT 475 L Q F+ PG + LR Y Q++ + + + G L+ ATGT Sbjct: 307 LPRLQQALESEFSSGPGAQKEATTFFDLRPYAFQQEILEDIRRERRSGIDRHLVIAATGT 366 Query: 476 GKTRTAIAMMFRLIQ---SQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKG 532 GKT A R + + +LF+ R + QA+ +F + F + Sbjct: 367 GKTMIAAFDYRRFAREQADKGRPSLLFIAHREEILRQAMASFRQV-LQDHEFGDV----- 420 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQ 592 L + TV S R L +P +D +V+DEAH Sbjct: 421 LVGGARPSQDRHLFCTVASWNARDLDRLDP---EHFDYVVLDEAHHSS------------ 465 Query: 593 FRSQLDYVSAYRRILDHFDAV-KIALTATPALHTVQ----IFGEPVYRYTYRTAVIDGFL 647 +Y+RIL+H + LTATP FG+ RYT+ + D Sbjct: 466 -------AGSYQRILEHVRPKCLLGLTATPERTDADDIRQHFGQ---RYTHEIRLPDAIE 515 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAF 707 P E V LS+ D E + F A Sbjct: 516 RRLLVPFHYFGVADHESVDLSR-------VSWRRGGYDAEELEGVFTG--------NRAR 560 Query: 708 NRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDA 767 V + + GS + L FC++ AHA + E A + +TGD+ Sbjct: 561 ADWVLQQAHEHATDLGSVRGLGFCISRAHARFMAEYFSA---------KQVPSAVLTGDS 611 Query: 768 DKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 RK I R +E + TVDL GVD+P + ++ LR S +Y Q GR Sbjct: 612 SDHERKS---IQRDLREGRIRFIFTVDLYNEGVDLPEVDTVLLLRPTESLTVYLQQMGRG 668 Query: 828 TRLCPEVNKTSFKIFDCVD-IYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEA 886 RL K + D V + R + RP+ + + E Sbjct: 669 LRLHE--GKPHLTVLDFVAPQHRRFRYAARFRALSARPEKRVDHQIQEGFPWLPSGCLIH 726 Query: 887 DGRSFAEHSHEQLVAKLQRI 906 R +H + + A++ R Sbjct: 727 LDRLATQHVLDNIRAQINRQ 746 >UniRef50_A6EW89 Helicase-related protein n=3 Tax=Gammaproteobacteria RepID=A6EW89_9ALTE Length = 1282 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 107/545 (19%), Positives = 187/545 (34%), Gaps = 98/545 (17%) Query: 365 DTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEML- 423 +Q + F S+N + + G+ + D S L R +EL + Sbjct: 305 HLESQQMWGRAFIGSSN----ISRQALQDGLEWNYQVDFPPDSGYLEAASRFDELFQHPN 360 Query: 424 ----------GSEPQKQNQWFADNPGMSEL----GLRYYQEDAVRAVEKAIVKGQQEILL 469 E +++ + PG E Q++A+ A++ ++G + L+ Sbjct: 361 VVPLTDNWIDEYEKRRKPPEQSLEPGSDEKQEVPTPNDVQQEALEALDLTRMEGYRRGLV 420 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 +ATG GKT + ++ +RILF+ R + QA + + N Sbjct: 421 VLATGLGKTWLSAFDAAQM----GARRILFVAHREEILYQAAETYLRIKPNS-------R 469 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 + K + + I A+VQ+L K T E +D IVVDE H Sbjct: 470 VGFYMGKQRDRTVDILCASVQTLGKETH--LERFDPRHFDYIVVDEFHHA---------- 517 Query: 590 ELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQIF-----GEPVYRYTYRTAVI 643 Y R+L++F + LTATP V+ Y V Sbjct: 518 ---------AAPVYHRLLNYFAPQFLLGLTATPDRTDRSDILSLCDDNLVFEYPLFEGVK 568 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV 703 FL+ P G+Y + E G+ F+ L Sbjct: 569 RRFLV----PFHY------YGIYDETVDYTEIPWRNGK-----------FDPNLLANKLA 607 Query: 704 IPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI 763 + V +TL FCV+ HAD + ++ + + Sbjct: 608 TYGRAKQVHRVW----GEQKQSRTLAFCVSRVHADFMADQFSR---------KGVRSAAV 654 Query: 764 TGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQM 823 G+++ + + +L +++ +VDL GVD+P+I ++ LR S+IL+ Q Sbjct: 655 HGESEMS---RGEALEKLENGQL-DVIFSVDLFNEGVDLPAIDTVLLLRPTESKILFLQQ 710 Query: 824 KGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKI 883 GR R K I D V + + ++ + + L +E ++ Sbjct: 711 IGRGLRKSSATGKDKLVILDFVGNHRSFLHKPQ---ALIGQAMNHRQLAEFARKAEKNQL 767 Query: 884 TEADG 888 DG Sbjct: 768 DLPDG 772 >UniRef50_Q3B4P0 DEAD/DEAH box helicase-like n=2 Tax=Bacteria RepID=Q3B4P0_PELLD Length = 1065 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 125/680 (18%), Positives = 220/680 (32%), Gaps = 105/680 (15%) Query: 395 IWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYY--QEDA 452 +W + + + E+ P ++ E+ + Q+Q D + LR Y Q+ Sbjct: 292 LWEHAIATFESHWEDRGEF-TPCDIEELKNALAQEQQGGSTDENEIPFFDLRPYGYQQVI 350 Query: 453 VRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQ-RFKRILFLVDRRSLGEQAL 511 + + G+Q+ L+ ATGTGKT A + F RIL++ R + +QA Sbjct: 351 LDDIHNERNAGKQKHLVIAATGTGKTMVAAFDYKGFAKEHSGFPRILYVSHREEILKQAR 410 Query: 512 GAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCI 571 +F +G +F I L S + TVQS R L + +P Y + Sbjct: 411 ASFRQVMRDG-SFGEI-----LAGGSEPRSFEHLFCTVQSWNARKL---DHLPPDYYAYV 461 Query: 572 VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV-KIALTATPALHTV---- 626 V+DEAH Y+ ++ H + + LTATP Sbjct: 462 VLDEAHHA-------------------AADTYQHLIAHVRPLSLLGLTATPERSDGEDIR 502 Query: 627 -QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND 685 G + ++ L P +G+ S + Sbjct: 503 NDFGGAFTHEIRLAESIERALL----APFHYFGIPDLDGLDFSSLQWTR----------- 547 Query: 686 TLEDDQDFEVADFNRGL-VIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL 744 ++V+ + A + V ++ Y+ + L FC++ HA + + Sbjct: 548 -----NGYDVSGLRHLVDNNSARAQWVMGQVDRYVSDIRKIRALGFCISVEHAVFMAKWC 602 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPS 804 R I ++ ++ + R R + R NI+ TVDL GVDIPS Sbjct: 603 RD---------NSIPAIVLSANSPSELRHNAQ---RQLEAREINIIFTVDLFNEGVDIPS 650 Query: 805 ICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD-IYSTLESVDTMRPVVVR 863 + ++FLR S ++ Q GR RL E K + D + + R + R Sbjct: 651 VDTVLFLRPTESLTVFLQQLGRGLRLHDE--KPHLTVLDFIAPQHRKFSFARRFRALTSR 708 Query: 864 PKVELQTLVNE---ITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETI 920 P++ L + + + EA + ++ A L+ L + + T Sbjct: 709 PELSLIPQIESDMPYLPAGCFVHLEAQAKEHVINNINVATASLRESQLLQELRQLSAATK 768 Query: 921 DK----------QVRRLDE-LCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLE 969 K + DE + P + K + ++ Sbjct: 769 GKVGLQEIVNFLNIDSPDELYKRGLPHQLLATATGDTSMPAPDRFNDSLAKGFRRLLLMD 828 Query: 970 KLKTDINNLNDAPIFLDIDDEV--VSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 + + E + L+G L+ + ++ PAL Sbjct: 829 DTNLIADGARMLIGASPVSQETPRLLHSMLWGKEKPGNGTLQDVEGYLRSH----PAL-- 882 Query: 1028 VINRPRDLTRKGLVELQEWF 1047 R L EL W Sbjct: 883 ---------RHDLRELFNWL 893 >UniRef50_A5UL17 Helicase n=3 Tax=Methanobrevibacter smithii RepID=A5UL17_METS3 Length = 956 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 109/556 (19%), Positives = 197/556 (35%), Gaps = 88/556 (15%) Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY+ F K + K ++D Y++ + + V Sbjct: 88 DYLNFTDPKALK----KLQSLDNIEV----KLYAQ--EKNGFHTKGYVFRKGNIYKGIVG 137 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 + + + + + F +G + + +W + N+ LP + E Sbjct: 138 SSNLTLNALTVNKEWNVEFTSLHDGEVLNNLLSEFNNLWD----EANNLEDVLPAY---E 190 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 +L + + + + + +L Q + ++ I G+ + LL ATGTGK Sbjct: 191 KLYDSQKNFTKLKENY--KKLSSEDLVPNSMQVGFMESLRSLIQSGESKALLVSATGTGK 248 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 T + + Q K+ LF+V R + +QA+ A+++ N F LT Sbjct: 249 TYASAFAV----QDFNPKKFLFVVHREQIAKQAINAYKNVFKNTKDFGL------LTGNS 298 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 + + +T+Q+L K + + +D IV+DE H+ Sbjct: 299 KDYDSNFLFSTIQTLSKDDVYT--KFKKDEFDYIVIDEVHKAGAY--------------- 341 Query: 598 DYVSAYRRILDHFDA-VKIALTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 +Y++I+D+F+ + +TA+P + I+ + + D D P Sbjct: 342 ----SYQKIMDYFEPEFCLGMTASPERPDGIDIYELFDHNLACEIRLKDALEEDLLCPFH 397 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNEL 715 + + GE ++D+ E +Q LV + + Sbjct: 398 YFG--------------ISDLEIDGETVDDSTEFNQ----------LVSDDRVNYLLEKS 433 Query: 716 TNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQ 775 Y K LVFC A EL AF K+ I +TGD + R+ Sbjct: 434 AYYGYSGERIKALVFCSRKKEA----NELSKAFNKRG-----HPAIVLTGDDSQQTREDA 484 Query: 776 -TMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV 834 +T + + TVD+ GVDIP I ++ +R +S I++ Q GR R Sbjct: 485 IYRLTNDEAKNKLEYIFTVDIFNEGVDIPEINQVLLVRPTQSPIIFIQQLGRGLRKF--K 542 Query: 835 NKTSFKIFDCVDIYST 850 NK I D + Y Sbjct: 543 NKDYVVILDFIGNYKN 558 >UniRef50_C4L054 Type III restriction protein res subunit n=70 Tax=Bacilli RepID=C4L054_EXISA Length = 959 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 110/553 (19%), Positives = 199/553 (35%), Gaps = 94/553 (16%) Query: 381 NGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGM 440 NG + +W + T KA +RP + + + P + F Sbjct: 162 NGEIVQHFFNRFKTMWNESIPLTLEWIKAYENVYRPM-VRDRVAEFPSMHD--FNQVKRE 218 Query: 441 SELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFL 500 E+ Q A+ ++ +G Q L+ ATGTGKT A + R KR+LF+ Sbjct: 219 LEIKPNDMQRSALDGIDAVRQQGHQRALVVSATGTGKTYLAAFDVRR----YEPKRMLFV 274 Query: 501 VDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD 560 V R + ++A+ F +I D L+ +K AT+Q++ K ++ Sbjct: 275 VHREQILKKAINDFHKV-----IGGNIEDYGILSGTSRVIDSKYVFATIQTISK--DETL 327 Query: 561 EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTA 619 +D I++DE+HR + Y+++L++F + +TA Sbjct: 328 YQFAQETFDYILIDESHRAG-------------------ANTYQKLLEYFTPKFLLGMTA 368 Query: 620 TPALHT-VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 TP +F Y Y + + + P Sbjct: 369 TPERSDGYDLFRLFDYNIAYEIRLQEALEENMLCPFHYFG-------------------- 408 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHAD 738 + D D + E+ F + LV + ++ Y + L+FC + A Sbjct: 409 ----VTDLEIDGEQKEIEVFQK-LVSTERVERIIEKIKYYGYSGEKLRGLMFCSSKKEAI 463 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 + E+L A +TGD + RK + ++ L + ++TVD+ Sbjct: 464 YLSEQLNA---------RGFKTCALTGDDTQAKRKQE---VNNLEQGLLDYILTVDIFNE 511 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST-------- 850 G+DIPSI +V LR+ S I++ Q GR R +K + D + Y Sbjct: 512 GIDIPSINQVVMLRQTESSIIFIQQLGRGLR--KHKSKRYVTVIDFIANYKNNYLIPIAL 569 Query: 851 ----LESVDTMRPVVVR-------PKVELQTLVNEITDSETYKITEADGRSFAEHSHEQL 899 ++ D++R V+ + + + E + D ++ E +++ L Sbjct: 570 SGDRSQNKDSIRRKVIDRSYISGTSTINFEAVAKERIYESINQARLTDLKTLKE-AYQNL 628 Query: 900 VAKLQRIIGLATF 912 +L R L F Sbjct: 629 KNRLGRQPMLTDF 641 >UniRef50_B0TQK0 Type III restriction protein res subunit n=22 Tax=Bacteria RepID=B0TQK0_SHEHH Length = 1072 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 97/557 (17%), Positives = 184/557 (33%), Gaps = 76/557 (13%) Query: 379 STNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP 438 ++ + + Y + D E L+ L + A+ Sbjct: 266 TSQEIPHIIEKSLSTFETYWESPDFEYFDGKTQ---SKERLISALQYAKGTYDS--AEPS 320 Query: 439 GMSELGLRYYQEDAVRAVE-KAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRI 497 ++ +Q + ++ + + + L+ ATGTGKT + + + Sbjct: 321 FYFDIKPHSHQRAILDKLKVERELHSRYRNLVVAATGTGKTIISAFDFAEFYAANPEAKF 380 Query: 498 LFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 LFL R + +QA A+ + + F + + KF + A++QSL + Sbjct: 381 LFLAHREEILKQARSAYRGV-LKSNQFGELLVGQNKPQKFNQ-----LFASIQSLNNQLA 434 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIA 616 + +D IV+DE H S+YR +L HF + + Sbjct: 435 TI--QLTEDYFDYIVIDEVHH-------------------IAASSYRPVLQHFKPQILVG 473 Query: 617 LTATPALHTV-QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVER 675 LTATP H I + + + P Q + + Sbjct: 474 LTATPERHDGADILKDFCNVIAAEIRLPEAINQRHLSPFQYFAVDDDTDL---------T 524 Query: 676 ISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNA 735 + D E + + D + L + + L FCV+ Sbjct: 525 KISWAKGRYDIAELTKLYTYND--------QRVLRILQSLEEIVTDISQMRALAFCVSKD 576 Query: 736 HADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 HA+ + ++ L++ +T D K+ +Q + K + N++ VD+ Sbjct: 577 HANFIAQKFN---------LKNIPCGVLTSDNSKEREILQQRL----KSKEINVLFVVDI 623 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD 855 GVDIP + ++FLR S ++ Q GR RL +K + D V Sbjct: 624 FNEGVDIPELDTLLFLRPTESLTVFLQQLGRGLRLT--KDKECCTVIDFVGNSRPEYDFS 681 Query: 856 -TMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNR 914 R ++ + + V + + E + + ++ R I LAT N+ Sbjct: 682 HKFRALIGKTNQSISKEVKQGFPH----LPLGCRIELQEKTQQMIL----RNISLATLNK 733 Query: 915 DRSETIDKQVRRLDELC 931 +R + + +L Sbjct: 734 NRLLNLISNYPHVTDLP 750 >UniRef50_A9NH67 Putative DNA/RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NH67_ACHLI Length = 986 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 109/628 (17%), Positives = 210/628 (33%), Gaps = 100/628 (15%) Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 H + ++ + + + F + ++E+ QE A+ + G + L+ AT Sbjct: 205 HEIVDAMQGFNIDENNELKDFIEQVDVNEIKPNEMQEMALEGLNNIRNSGGNKALIIAAT 264 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGL 533 GTGKT + +F+L R K++LF+V R + AL F+ + Sbjct: 265 GTGKTYLSAFDVFQL----RPKKVLFVVHRGKILRDALRTFKTIMPEV-------SMGEF 313 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 + + A+VQ++ K + + + +D I++DEAHR Sbjct: 314 VGSKKDLESDYLFASVQTISK--IDNLNLFDPSYFDYIIIDEAHRS-------------- 357 Query: 594 RSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDP 652 +Y+RI +F + +TATP + +Y L D Sbjct: 358 -----AADSYQRITSYFTPKFLLGMTATPERTDSR----NIYE-----------LYDNQI 397 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC 712 ++I R A E + ++ N L + D L I A + Sbjct: 398 AVEIRLRQALEKELVVPFHYFGIEDATTDIQNINLNTEID----KLAEKLNIKARVELII 453 Query: 713 NELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDAR 772 + Y K L +CV AHA+ + ++ I Sbjct: 454 ENIKKYKHSGDKTKALGYCVNIAHAEYMANAFNE-----------RGLVSIALTGGTAEL 502 Query: 773 KVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 + I R P + + TV++ G+DIPS+ I+ LR S I++ Q GR R Sbjct: 503 DREDTIRRLEDPNDPLSYIFTVEIFNEGIDIPSVNLILMLRPTNSSIIFTQQLGRGLRKY 562 Query: 832 PEVNKTSFKIFDCVDIYST--------------------LESVDTMRPVVVRPKVELQTL 871 +K + D + ++ + + + + + L + Sbjct: 563 --KDKEYLTVLDFIANHNKNFLLPIALIGDKAYDKDDLIVSTANDFFDIPGDTFISLNKV 620 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELC 931 E ++ + E ++ L R+ L F D + I ++ + Sbjct: 621 SKERILAQLEATDFNEITYLKEAYLDKKKN-LGRVPRLTDFAFDEFDPIRFIKKKKSYIS 679 Query: 932 QDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEV 991 A+ +EKG + + + I L+ + A + + Sbjct: 680 FVAS-----------QEKGILEDSSLHDSFIKLIGYLDSMLPIKRPYEYAILRELTHYKA 728 Query: 992 VSVKSLYGDYDTPQD--FLEAFDSLVQR 1017 + + L+ D L++F+ V+ Sbjct: 729 LEMNELFSKMKKYIDNPNLDSFNHSVKN 756 >UniRef50_C0GPL2 Type III restriction protein res subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GPL2_9DELT Length = 978 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 106/603 (17%), Positives = 199/603 (33%), Gaps = 85/603 (14%) Query: 440 MSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILF 499 + Q +A+ ++K + + + ATG GKT A F IQS + + LF Sbjct: 356 PESIQPNVAQSEALEGLKKLRTRKARSGAVIAATGVGKTYLAA---FDFIQSGK-DKCLF 411 Query: 500 LVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS 559 + R + +A +F +I K +K A +Q+L ++ + Sbjct: 412 IAHREDILRKARESFSHVLGP-----EGLEIFSGRSKDVSYGSKAVFAMIQTLGRQ--GN 464 Query: 560 DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALT 618 + +D IV+DE H + YR++LD+F + LT Sbjct: 465 MKRFHPREFDYIVMDEFHHA-------------------MANTYRKVLDYFQPDFLLGLT 505 Query: 619 ATPALHTVQIFGEPVYRYTYRTAVIDG----FLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 ATP +DG +L D + ++ A + L+ + Sbjct: 506 ATPER-------------------MDGRDVLWLCDYNIAYEMRLFQAIDKELLAPFQYFA 546 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 P D++ + L + N L +L G K L FC + Sbjct: 547 VHDPTDYA--QIAWKRTDYDQEELTMALANDTRTALIANNLKKFLPYQGKIKALAFCSSV 604 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLP-NIVVTV 793 HA L + GD+ ++ R + +I R KE P ++ V Sbjct: 605 DHAHYTANRLTQE--------HGFEATALVGDSSQEQR--EKVIARLEKENDPLKVICCV 654 Query: 794 DLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN-KTSFKIFDCVDIYSTLE 852 D+ GVDIPS+ +++ LR +S ++ Q GR R + + D V Y + Sbjct: 655 DIFNEGVDIPSLSHVLLLRPTQSFTVFLQQIGRGLRKVQTKDVNKHLVVIDFVGNYRSAH 714 Query: 853 SVDTMRPVVVRPKVELQTLVNEITDSETYKI----TEADGRSFAEHSHEQLVAKLQRIIG 908 + P+ + ++ + + + K + +++ R I Sbjct: 715 ----VAPLALAGYTSIEEYIRDSARTRGSKSGMSNPPLGCSVSPDLEVQRIWDSKLREIV 770 Query: 909 LATFNRDRSETIDKQVRRLD-------ELCQDAAGVNFNGFASRLRE--KGPHWSAEVFN 959 + D+ V+ L E D + + F K + ++ N Sbjct: 771 PMPRGEQLRDLYDEVVQDLGLISPGLCEFYADPQRADPHAFIKHFGSWIKTKKYFDDLSN 830 Query: 960 KLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSP 1019 ++ + + + P+ + ++ SL G D F + + P Sbjct: 831 TENSLLSTQGESFLEYLEKDLNPVKSYKMVVLKTLLSLKGTSWKIDDIASGFLNYYLQHP 890 Query: 1020 NAQ 1022 Sbjct: 891 EHI 893 >UniRef50_B6AMU8 Putative helicase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AMU8_9BACT Length = 1055 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 132/701 (18%), Positives = 230/701 (32%), Gaps = 102/701 (14%) Query: 420 LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIV-KGQQEILLAMATGTGKT 478 ++ + S + ++ + P ++ +QE+ + +E G L+ ATGTGKT Sbjct: 297 VQKILSRSRSRDDFSDTIPF--DIRPYPFQEEVLDRLEAEREVHGSFRNLVVSATGTGKT 354 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP 538 A R + + LF+ R+ + EQ+L F + F ++ Sbjct: 355 VIAAFDFRRFREQKPDATFLFVAHRQEILEQSLKQFRHI-LEDRNFGELWVAGSRPVH-- 411 Query: 539 EDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLD 598 + A++QSL + + + ++D +V+DE H G Sbjct: 412 ---GQHVFASIQSLDRAAVGR---ISPEQFDYVVIDEIHHG------------------- 446 Query: 599 YVSAYRRILDHFDA-VKIALTATPALHTVQIFGEPVYRYTYRTAVID---GFLIDQD--P 652 YRR+L+ + + LTATP G V RY D G ID++ Sbjct: 447 MAPTYRRLLETLKPRILLGLTATPERSD----GLDVRRYFNDRMAADIRLGEAIDRNLLC 502 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV-IPAFNRAV 711 P + V+ + + E ++ D L NR+V Sbjct: 503 PFHYFGVT----------DSVDYRNLRWER--------GQYDRRDLEHVLTGNDLRNRSV 544 Query: 712 CNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 L Y + + FCV HA + + A ++ D+ ++ Sbjct: 545 LRALREYCPDLSEVRGIGFCVGVRHAQEMSDLFNRA---------GIPSASLSADSSREV 595 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 R + + VDL G+DIP + ++FLR S ++ Q GR R Sbjct: 596 RDAVSAKI---SSGEWKFIFVVDLYNEGIDIPVVDTVLFLRPTESLTIFLQQLGRGLRQR 652 Query: 832 PEVNKTSFKIFDCVD-IYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRS 890 KT + D V ++ + + + +P ++ V E R Sbjct: 653 R--GKTHLTVLDFVGHMHEKFDCASRLSALSGQPSYRIRKEVEEGFPHLPAGCVIQLERV 710 Query: 891 FAEHSHEQLVAKLQ----------RIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFN 940 +H E + L R + R + R G F Sbjct: 711 ARDHVLENIRKSLSLRRGSWVEKVREMAGDLKRPPRLREFFQAFRPPLPALYRKEGQVFR 770 Query: 941 GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD 1000 G+ L E G ++ + D + + V +++ + Sbjct: 771 GWKRFLVEAGVIPDFSDPDESILTRGIGRMVHLSAGRYPDLLRGMAGGEPVGELEARF-- 828 Query: 1001 YDTPQDFLEAFDSLVQRSPNAQPALQAV---INRPRDLTR--KGLVELQEWFDRQHFEES 1055 P+ FL A +L +P L V + + R L EL R Sbjct: 829 --PPRQFLMAHYALWGETPEK-TGLGKVSETVQKLRKNPVLCDELQEL-LELARD----L 880 Query: 1056 SLRKAWKETRNEDIAARLIG-HIRRAAVGDA-LKPFEERVD 1094 +L +K R EDI + G + R + A L F+ RV+ Sbjct: 881 ALFPVFKTARTEDIPLDVHGTYTRDEILAAAGLFGFDRRVE 921 >UniRef50_Q0AY89 DNA or RNA helicases of superfamily II-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AY89_SYNWW Length = 773 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 130/694 (18%), Positives = 240/694 (34%), Gaps = 115/694 (16%) Query: 416 PEELLEMLGSEPQ-KQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 ELL+ +G P + + L LR +QE+ + +++ + L+A A G Sbjct: 127 KSELLQFMGQSPHFRIYDDYLPRQRGKVLELRPHQEETLERLQELRGEYHSMALIADAQG 186 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLT 534 TGKT TA+ LF+ L +QA F++ +K + Sbjct: 187 TGKTTTAVLDA-----CNMGLCTLFVAHTLELLQQAANRFKELWPRAQ-------VKIID 234 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 + + +A++Q L R Q + I++DEAH Sbjct: 235 NYAGPLDADVMIASIQGLHNRLTQ----FAPDHFGYIIIDEAHHA--------------- 275 Query: 595 SQLDYVSAYRRILDHFDA-VKIALTATPALHT----VQIFGEPVYRYTYRTAVIDGFLID 649 + YR++L +F + LTATP H ++IF +R +TAV G L+ Sbjct: 276 ----AATTYRKVLSYFKPRFLLGLTATPERHDQESIMEIFQNEAHRLDLKTAVEIGELVP 331 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 +++ T V + + + D + + +P NR Sbjct: 332 IRC-VRVKTNIDFSQVRI---------------------NGIRYNYRDLDSCVHVPERNR 369 Query: 710 AVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADK 769 + YL +K +VFC + HA V E R + + + Sbjct: 370 LIVE---TYLSHVPGEKAVVFCASIQHAMEVAELFRDS-----------GVKAEVVEGRM 415 Query: 770 DARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 R + ++ ++++++ ++ D+L G D P + R SR++Y Q GR TR Sbjct: 416 KKRDREAVLENYHQDKV-KVLCACDILNEGWDSPETAVLFMARPTLSRVIYLQQLGRGTR 474 Query: 830 LCPEVNKTSFKIFDCVDIYS---------TLESVDTMRP--VVVRPKVELQTLVNEITDS 878 P K + +FD +D + L + RP + + P+ E++ + Sbjct: 475 KAP--GKEALLVFDFIDNTARHNHAVNLHRLLRLREYRPGTLALAPQEEMEEENRRLRLG 532 Query: 879 ETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETI--DKQVRRLDELCQDAAG 936 E + ++ L + I + + + E D RR + + G Sbjct: 533 EKIETLLPHNIFIKDYELVDLFDWQEEIKDMMSLHELALELYVDDATARRWVDEGKITPG 592 Query: 937 VNFNGFASRLREKGPHWSA-EVFNKLPGFIAR-LEKLKTDINNLNDAPIFLDIDDEVVSV 994 +F R+ + H E + AR E+++ D A V+ Sbjct: 593 PDFELPMGRVTHRYFHRERLEDIRQQLDIPARKPEEIRQDFFKYVKAGHMTTSHKPVMLK 652 Query: 995 KSLYGDYDTP----QDFLEAFDSLVQRSPN---AQPALQAVINRPRDLTRKGLVELQE-- 1045 L + + F + ++ + A INR ++++ + L Sbjct: 653 GMLILVNEKGQVDLAALVSFFRAFYEQRADAGLQVEISNASINRVKEMSDFEIARLMLTM 712 Query: 1046 ---WFDRQHFEESS--------LRKAWKETRNED 1068 F+R+ F E + WK ED Sbjct: 713 PFEKFERKFFLEHRKDLSQVAFVSSLWKRLTAED 746 >UniRef50_D2Q5U4 DNA/RNA helicase (DEAD/DEAH box family) n=7 Tax=Bifidobacterium RepID=D2Q5U4_9BIFI Length = 1050 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 101/578 (17%), Positives = 206/578 (35%), Gaps = 73/578 (12%) Query: 417 EELLEMLGSEPQKQNQWFADNPGMSE----LGLRYYQEDAVRAVEKAIVKGQQEILLAMA 472 + L++ + ++ N ++ + Q +A+ + + +G+ ++ A Sbjct: 207 DAWLKLYEEDFKRYAPPRRPNRRQTQDAGTITPNAMQVEALMNLAQLRKQGESRAIIISA 266 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKG 532 TGTGKT + + + + KR+L++ + + ++A +++ G + G Sbjct: 267 TGTGKTYLSAFDVRQF----KPKRMLYIAQQEQILKKAKESYQKVL--GCPAKELGLFSG 320 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQ 592 ++ E K ATVQ++ + + +D I++DE H Sbjct: 321 IS---KEHDRKYLFATVQTMSRPEVLV--QFGKDDFDYILIDEVHHA------------- 362 Query: 593 FRSQLDYVSAYRRILDHFDA-VKIALTATPALHT----VQIFGEPV-YRYTYRTAVIDGF 646 +Y+RI+D+F + +TATP ++FG V Y + A+ + Sbjct: 363 ------AADSYKRIIDYFTPDFMLGMTATPERTDGANIFELFGNNVAYEIRLQRALEESM 416 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 L P GV+ E ++ + + +++ + L P+ Sbjct: 417 LC----PFHY------YGVHEYIQEAPNGRLLGKQIKASDWTEQERNDLSHWLEELTSPS 466 Query: 707 FNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD 766 + +++ Y + + LVFC A + ++ + H ITG+ Sbjct: 467 RVHYIIDKIQLYGEAGTDVQGLVFCSRREEAKRLSALFNQQINQQAERPYH--TKAITGE 524 Query: 767 ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 + R + + + L + + TVDL GVDIP I IV LR+ +S I++ Q GR Sbjct: 525 HSQAERDL--AVEQLENGEL-DYIFTVDLFNEGVDIPHINQIVMLRQTQSSIIFTQQLGR 581 Query: 827 ATRLCPEVNKTSFKIFDCVDIYST-------LESVDTMRPVVVRPKVELQTLVNEITDSE 879 R K S + D + Y+ L R V + ++ I+ + Sbjct: 582 GLR--KASGKDSVVVIDFIGNYANNYLIPIALYGNTGDRDVARKNLQRETIGISSISFDK 639 Query: 880 TYK--------ITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELC 931 + + ++Q+ +L RI L R + + + D+ Sbjct: 640 IARERVLASLDTADLSNMQLLSRQYQQMRYELGRIPMLMDIARRDASLVYTMAAKNDDYL 699 Query: 932 QDAAGVNFNGFASRLREKGPHWSAEVFNK-LPGFIARL 968 + R E ++ G + L Sbjct: 700 SFVRSREKSLSRGRHATASYLEQLEPTSEVHNGMLKML 737 >UniRef50_A1SY30 Type III restriction enzyme, res subunit n=3 Tax=Bacteria RepID=A1SY30_PSYIN Length = 1149 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 91/448 (20%), Positives = 162/448 (36%), Gaps = 67/448 (14%) Query: 405 NMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ 464 + + P + E + ++ + + E+ Q +A+ + G Sbjct: 174 DFDRGTPVTASFIDAYENIYNKQKILFKEHESVLIEPEISPNSMQVEALDNINVLRQSGA 233 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTF 524 ++ LL ATGTGKT + Q+ + KR+LF+V R ++ ++L F++ G T Sbjct: 234 RKALLISATGTGKTYLSAFDA----QALKPKRLLFVVHRLTIALKSLETFQNVFGTGKTM 289 Query: 525 NSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDK 584 K DK ATVQ++ K+ + +D I++DE+HR Sbjct: 290 GVYSGSKQELDK------DFLFATVQTISKQNH--LDQFNKDYFDYIIIDESHRSG---- 337 Query: 585 EQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQIFGEPVYRYTYRTAVI 643 ++Y+R+++HF+ + +TATP GE ++ Sbjct: 338 ---------------ANSYKRLIEHFEPTFLLGMTATPERTD----GEDIFS-------- 370 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV 703 L D + +I A E LS +++ + DF L Sbjct: 371 ---LFDHNIAYEIRLNRAMEEGMLSNFHYYGVTDL-------IIDNVIQENMGDF-AFLS 419 Query: 704 IPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI 763 + Y G + LVFC N A + E + + Sbjct: 420 SHERVDNIIKHACFYGSDNGITRGLVFCSRNEEAKKLAEMFNQ---------SGFRSLAL 470 Query: 764 TGDADKDARKVQ-TMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 +G+ +D R + N + + TVD+ G+DIP + I+ +R S I++ Q Sbjct: 471 SGENSEDERARAIERLETDNLAEKLDYIFTVDIFNEGIDIPKVNQIIMIRPTDSAIVFVQ 530 Query: 823 MKGRATRLCPEVNKTSFKIFDCVDIYST 850 GR R K + D + Y+ Sbjct: 531 QLGRGLRKVD--GKDYLTVIDFIGNYNN 556 >UniRef50_Q027W9 Type III restriction enzyme, res subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027W9_SOLUE Length = 570 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 111/535 (20%), Positives = 196/535 (36%), Gaps = 73/535 (13%) Query: 379 STN-GREYRATMKTKSGIWYRDVR----------DTRNMSKALPEWHRPEELLEMLGSEP 427 STN G E + + I+ D+ R L P +L + + Sbjct: 66 STNIGVEVLDEIIRAAHIYRADIPVVATNLGFTDQARTQQSMLMAAGTPLQLWDR--TTL 123 Query: 428 QKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQE-ILLAMATGTGKTRTAIAMMF 486 ++ + AD P ++ LR YQE A+ ++ + V G++ L+ MATG GKT A Sbjct: 124 SRRWEKLADRP-VATRQLRGYQESAIASILEVAVSGKRRSALVVMATGLGKTFVAAESYR 182 Query: 487 RLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHV 546 R+ ++ R L L L Q AF ++ +++ + P+ + Sbjct: 183 RMRETHPTLRALVLAHTNDLVYQLERAF-WPCLDKSEITGVWNGYEV----PDPEASLTF 237 Query: 547 ATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRI 606 A + S+ + LQ + + D ++VDE H + L+ SQ Sbjct: 238 ACIDSVASK-LQVSGRLDLG-VDLVIVDECHHAGSDEYRVVLEALRCGSQDG-------- 287 Query: 607 LDHFDAVKIALTATPAL----HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ 662 I +TATP +FGEPV + G+L + D + + Sbjct: 288 -----PFLIGMTATPWRPDGTSIHSLFGEPVSCVDIVQGLKMGWLSNVDYRMHV------ 336 Query: 663 EGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT 722 + + + +V ++P+G NR + I ++ AV +L Sbjct: 337 DNINWQELNRVHHLTPRG-----------------LNRTIFIQEWDDAVVQKLKETWYEI 379 Query: 723 GSQKTLVFCVTNAHADMVVEELRAA-FKKKYPQLEHDAIIKITGDADKDARKVQTMITRF 781 + +VFC HA + + + F + A + ++ F Sbjct: 380 PHARAIVFCGNIDHAITMRDRVNGVGFARAEALYAGSPGAPRLSHA-----QRSKILADF 434 Query: 782 NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKI 841 + ++ VDLL G+D+P + VF R SR ++ Q GR RL K + Sbjct: 435 HDG-HAGVLCAVDLLNEGIDLPDVNICVFQRVTHSRRIFVQQLGRGLRLA--SGKDRVIV 491 Query: 842 FDCV-DIYSTLESVDTMRPVVVRPK-VELQTLVNEITDSETYKITEADGRSFAEH 894 D V D+ +D + P+ V L + V + K E+ R++ + Sbjct: 492 LDFVSDVRRFAAGLDLQNKLQEGPQYVSLGSKVRFMNVGGEDKEAESFLRAWLQD 546 >UniRef50_B8I140 Type III restriction protein res subunit n=16 Tax=root RepID=B8I140_CLOCE Length = 536 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 110/545 (20%), Positives = 194/545 (35%), Gaps = 85/545 (15%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 + LR YQ++A +AV KG + LL + TG GKT + +++ +R+L L Sbjct: 1 MELRPYQQEAKQAVLNEWGKGILKTLLVLVTGGGKTIVFSKITEECVRNG--ERVLILAH 58 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 R L +QA + N + + ++ V +VQSL++ + Sbjct: 59 RGELLDQAADKLKKAT------NLGCATEKAEESCIGSWFRVVVGSVQSLMRE--KRLNQ 110 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATP 621 P ++ I++DEAH Y+R+L HF+ A + +TATP Sbjct: 111 FPKDYFNTIIIDEAHH-------------------CLSDGYQRVLSHFNEAKVLGVTATP 151 Query: 622 ALHT----VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 Q F Y YT A+ +GFL I + GV + G Sbjct: 152 DRGDMRNLGQFFESLAYEYTLPRAIKEGFLCPIKAQ-TIPLKLDLSGVSVQAG------- 203 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHA 737 DF+ D L + ++ +E+ L KT+VF Sbjct: 204 --------------DFKNGDLGNAL--EPYLESIADEM---LKCCTDHKTVVFLPLIK-- 242 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 ++ + KK + + + +++ + ++ F+ + N++ LLT Sbjct: 243 --TSQKFKDILNKKGFRA---------AEVNGNSQDREQVLADFDSGKY-NVICNSMLLT 290 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV------DIYSTL 851 G D PS+ IV LR + R LY QM GR TRL K + D + ++ Sbjct: 291 EGWDCPSVDCIVVLRPTKIRSLYVQMVGRGTRLH--SGKDHLLLLDFLWHTERHELCHPA 348 Query: 852 ESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKL-QRIIGLA 910 + V + ++ + K D + E + + +A++ R L Sbjct: 349 ALICESEEVAKKMTENIEAAGCPVDIEAAEKQAADDVVAQREEALAKKLAEMKNRKRKLV 408 Query: 911 TFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP-HWSAEVFNKLPGFIARLE 969 + + + G + L + G E K + RL+ Sbjct: 409 DPLQFEMSIQAEDLASYVPAFGWEMGPPSDKQIKTLEKLGIFPDEIESAGKATKLLERLD 468 Query: 970 KLKTD 974 K + + Sbjct: 469 KRRNE 473 >UniRef50_Q5FLU2 Phage related helicase n=3 Tax=Lactobacillus acidophilus RepID=Q5FLU2_LACAC Length = 864 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 109/568 (19%), Positives = 200/568 (35%), Gaps = 95/568 (16%) Query: 378 YSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE-WHRPEELLEMLGSEPQKQNQWFAD 436 Y N + + + D + L E W + + + A+ Sbjct: 158 YEWNLNVNSSDNAEITEQINWQIEDEWRKATPLTEKWLT---WYQYQFERNKPVDPQIAE 214 Query: 437 NPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKR 496 N ++ Q++A+ ++ G+ + L+ ATGTGKT + + + KR Sbjct: 215 NKSKLKVQPNKMQKEALGEIQSLRQNGKNKALIISATGTGKTYLGAFDVQKF----KPKR 270 Query: 497 ILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRT 556 L++V R + +++ +F D + I+ + +K ATVQ+L K Sbjct: 271 FLYVVHREQILQKSRNSFYDVIGGAYSDYGIYS----GNHREGLKSKYIFATVQTLAK-- 324 Query: 557 LQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKI 615 ++ + +D I+ DEAH + + +I ++F + Sbjct: 325 DENLKKFARDAFDYILFDEAHHLGSVQE-------------------LKIFNYFQPQFCL 365 Query: 616 ALTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 +TATP I+ Y Y + + D P VE Sbjct: 366 GMTATPERTDDFNIYKLFDYNIAYEIRLQNALDQDMLCPFHYYG--------------VE 411 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 Q E+IN + LV + + Y + L+FC Sbjct: 412 DYIYQDELINGATSL----------KRLVSDERVNYILQQTDYYGYSGRTLHGLIFCSRK 461 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 A+++ E+L + + I+G R + + + K ++ +VTVD Sbjct: 462 KEAEILAEKLTE---------KGCPALAISGTDSIGER--EKAVKKLEKGKV-KYIVTVD 509 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV 854 + GVDIP I IV LR +S I++ Q GR R K + D V Y Sbjct: 510 VFNEGVDIPCINQIVLLRNTQSSIVFVQQLGRGLRKY--KGKDYLTVIDFVGNYDN---- 563 Query: 855 DTMRPV-----------VVRPKVELQTL-------VNEITDSETYKITEADGRSFAEHSH 896 + + PV VR K++L+ + + S+ YK + Sbjct: 564 NYLIPVALTGDKSHNRDQVRDKLDLEPIYGVSLINFTNVAKSQIYKSINHSNLTLKRKLR 623 Query: 897 EQLVAKLQRIIGLATFNRDRSETIDKQV 924 E+ + + ++I + ++E+ID +V Sbjct: 624 EEYINEKRKIGRVPLMYDLQNESIDCEV 651 >UniRef50_A3Z7D3 Putative ATP-dependent helicase n=3 Tax=Chroococcales RepID=A3Z7D3_9SYNE Length = 1052 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 99/429 (23%), Positives = 157/429 (36%), Gaps = 77/429 (17%) Query: 434 FADNPGMSELGLRYY--QEDAVRAVE-KAIVKGQQEILLAMATGTGKTRTAIAMMFRL-- 488 ++ ++ LR Y Q + + A+ + V + L+ ATGTGKT A + RL Sbjct: 306 VREDSALAWFNLRPYAYQREMLEALAAERTVHDRWHNLVVAATGTGKTVLAAFDVARLHS 365 Query: 489 -----IQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTK 543 + +L + R+ + +QAL F + F ++ L ++ + Sbjct: 366 DFPERFPAADPPPLLLIAHRKEILQQALATFRQV-LRDPAFGELYVDGELPRQW-----R 419 Query: 544 IHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAY 603 A+VQSL +R L +P R+ ++VDE H L +Y Sbjct: 420 HVFASVQSLAQRDLAE---IPADRFAVVIVDEFHHAAAL-------------------SY 457 Query: 604 RRILDHFDA-VKIALTATPALHTV----QIFGEPVY-RYTYRTAVIDGFLIDQDPPIQII 657 RR LDH + + LTATP + FG + TA+ G L P Sbjct: 458 RRWLDHLRPQLLLGLTATPERADGLDVLRWFGGRIAAELRLWTALDQGLL----APFHYF 513 Query: 658 TRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTN 717 + LS E E+ D + +EL Sbjct: 514 A--VADATDLSSLEWRRGGYVPAELSTLYTGD---------------HRRVALILSELEK 556 Query: 718 YLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTM 777 + + L FCV+ HA + E RA + + D R+ Sbjct: 557 AVAEPRRMRALGFCVSVEHARFMAERFRAVGLQ---------AEALDASTPSDERR--EA 605 Query: 778 ITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKT 837 + R + L I+ VDL G+DIPSI ++ LR S +++ Q GR RL PE K+ Sbjct: 606 LRRLHAGEL-QILFAVDLFNEGLDIPSIDTVLLLRPTESAVVFLQQLGRGLRLSPETGKS 664 Query: 838 SFKIFDCVD 846 + D + Sbjct: 665 CLTVLDFIG 673 >UniRef50_C4R463 Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4R463_PICPG Length = 682 Score = 237 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 104/601 (17%), Positives = 205/601 (34%), Gaps = 97/601 (16%) Query: 440 MSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQ-RFKRIL 498 S + LR YQ+D + ++ K I G+ + +++ATG GKT ++ + ++ ++ L Sbjct: 55 PSTVRLRPYQKDCIESIMKVIRGGETRLAVSLATGGGKTVIFSNLLNEIPSNKYNGQKTL 114 Query: 499 FLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQ 558 LV R+ L +QA + + D+ GL +D + A+V +L + + Sbjct: 115 ILVHRKELADQAARTIKRFFPHMKI---EIDMAGLRPTHDDDVDVVV-ASVPTLARNNSK 170 Query: 559 SDEPMP--VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA---- 612 + + I++DE H +Y +IL +F+A Sbjct: 171 NPRLFDYDPNEFKAIIIDECHHAISD-------------------SYIKILQYFNALSKD 211 Query: 613 -----VKIALTATPALHTVQ----IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQE 663 + + +AT H Q +F Y + V +G+L + Sbjct: 212 SSDGIIVVGFSATLKRHDAQPLDKVFNTIAYEKDLISMVKEGYLSEL------------- 258 Query: 664 GVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTG 723 + ++ + + L+ D+++ + A V G Sbjct: 259 --------SITKVEGAFSLDDVKLDKTGDYQLQSLESSVNTAAVAELVLKTYLERKKVLG 310 Query: 724 SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNK 783 + +L FCV H + E A K ++G+ R + +I F Sbjct: 311 LKSSLFFCVNKQHVQDLCELFCANGIKAGF---------VSGNTPLLER--EQIIKNFID 359 Query: 784 ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 +L N+++ ++ T G DIP+I +I LR +SR L QM GR RL KT + D Sbjct: 360 GKL-NVLMNCNVFTEGTDIPNIDSIFLLRPTKSRPLLSQMIGRGLRLH--SGKTKCYVTD 416 Query: 844 CVDIYSTLESVD-TMRPVVVRPKVELQTLVNE-ITDSETYKITEADGRSFAEHSHEQLVA 901 V + +VD T+ + R L E + + Y + + ++ + Sbjct: 417 FVGTTHSGINVDATLEGITKRQMNSLLQFDQEMVHGNRDYSKMLEEVPDYLRYTSFNDIT 476 Query: 902 KLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKL 961 I ++ +I+ ++ + L G S +K Sbjct: 477 SYINSIPKNLSKENQR-SIEYKLYKQHSLPWIQLG------IDSWGVSLADRSYLRIDKT 529 Query: 962 PGFIARLEKLKTDIN-NLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPN 1020 G + N + + + ++ L + ++ + Sbjct: 530 KGKFELKRYIAVPYPKNGIKRKKLIFHSENL-------------EEILTDAERFLKEKGS 576 Query: 1021 A 1021 Sbjct: 577 K 577 >UniRef50_Q6M621 Predicted HKD family nuclease n=5 Tax=Corynebacterium RepID=Q6M621_CORGL Length = 971 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 96/453 (21%), Positives = 163/453 (35%), Gaps = 67/453 (14%) Query: 401 RDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI 460 R + PEW E + QN D + QE+A+ A+ Sbjct: 170 RQIERSTPLTPEWISEYEATRRVPERLVSQNIPLEDQSNAGTIVPNVMQEEALDALLSLT 229 Query: 461 VKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRIN 520 KG++ ++ ATGTGKT A L + +R+LF+V R + ++A F Sbjct: 230 EKGEKRGVIISATGTGKTILAALATRML----KPERVLFVVHREQILDKARSEFIKVLER 285 Query: 521 GDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGY 580 D ++ E T+Q+L K + + +D ++VDE HR Sbjct: 286 P-----AVDFGKMSGSTKELDKPFVFGTIQTLTKEA--TLSQISPTDFDLVIVDEVHRAG 338 Query: 581 ILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQIFGEPVYRYTYR 639 +Y +L+H + LTATP G +Y Sbjct: 339 -------------------AESYLALLNHLQPQFLLGLTATPERTD----GFNIYE---- 371 Query: 640 TAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFN 699 L D + P +I + A E L D + V D + Sbjct: 372 -------LFDFNVPYEIRLQAALESNMLVPFHYYGVTD---------FTLDSETTVTDTS 415 Query: 700 R--GLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEH 757 + LV + L Y P + + L+FC A+ + + L L + Sbjct: 416 KLSALVSEERVHHILEALKTYGHPE-NVRGLIFCSKTEEAEELSKLLDQ-------SLFN 467 Query: 758 DAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 +++K + KD+ + + + + ++TVD+ G+DIPS+ IV +R +S Sbjct: 468 GSLLKTKALSAKDSIPYREEVVAELESGDLDYILTVDIFNEGIDIPSVNQIVMIRSTQSS 527 Query: 818 ILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST 850 I++ Q GR R K ++ D + Y+ Sbjct: 528 IVFTQQLGRGLR--KAAGKDHLRVIDFIGNYAN 558 >UniRef50_A7FVD5 Restriction/helicase domain protein n=10 Tax=Bacteria RepID=A7FVD5_CLOB1 Length = 968 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 84/434 (19%), Positives = 162/434 (37%), Gaps = 72/434 (16%) Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 L E+ E K +F + Q+ A+ +++ + + L+ ATGTGKT Sbjct: 204 LRELKKVEENKTLNFF----DYEVIMPNDMQKRALENLKRLRKSEEDKALVIAATGTGKT 259 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP 538 + + K++LFLV R + ++ F+ N + + LT Sbjct: 260 YMSAFDVI----EYNPKKMLFLVHREEILRRSEKTFKKLVKNKNKTTGL-----LTGNSK 310 Query: 539 EDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLD 598 + +T+Q++ K+ + ++ IV+DEAH Sbjct: 311 AIDSDYLFSTIQTMGKQ----FQNFKKDEFEYIVIDEAHH-------------------I 347 Query: 599 YVSAYRRILDHFDA-VKIALTATPALHTVQ-IFGEPVYRYTYRTAVIDGFLIDQDPPIQI 656 Y R++++F+ + +TATP + IF + + ++ P Sbjct: 348 SSPLYERVINYFEPKFLLGMTATPERCDGKNIFDIFNNNVALEVRLREALELELVIPFHY 407 Query: 657 ITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT 716 E + LS D + ++ + + L + + +++ Sbjct: 408 FGITDIEDIDLS--------------------DVKVQDLDEIAKRLNVNKRVDFIIDKMN 447 Query: 717 NYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQT 776 Y +K + FCV HA + +E + +TG+ + R++ Sbjct: 448 FYGHDGEKRKCVGFCVNIDHAKYMADEFNK---------RGIHSVFLTGNNSANEREL-- 496 Query: 777 MITRFNKERL-PNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN 835 I + ++ ++ TVD+ G+DIPSI I+ LR S I++ Q GR R P N Sbjct: 497 YIKKLEDDKDDLEVIFTVDIFNEGIDIPSINLILMLRPTNSPIVFIQQLGRGLRKYP--N 554 Query: 836 KTSFKIFDCVDIYS 849 KT + D + ++ Sbjct: 555 KTFLTVLDFIGNHN 568 >UniRef50_D1AKE3 Type III restriction protein res subunit n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AKE3_SEBTE Length = 993 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 112/624 (17%), Positives = 211/624 (33%), Gaps = 90/624 (14%) Query: 429 KQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRL 488 + + + Q + + ++ G ++ L+ ATGTGKT A + ++ Sbjct: 252 ETFDFKKEETEKEIFMPNKMQSELLEKLKLTREFGNKKGLIVAATGTGKTYLAAMDILKM 311 Query: 489 IQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVAT 548 K LF+ R L A F + LT + + +T Sbjct: 312 ----NPKSFLFIAHREELINNAFNVFSKILPYDKN-----EYGFLTGSEKNYNKRFMFST 362 Query: 549 VQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILD 608 +QSL K T E +D I++DE H S Y +++ Sbjct: 363 IQSLYKNT----EYFSKDAFDYIIIDEFHHS-------------------KASTYEAVIN 399 Query: 609 HFDAV-KIALTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVY 666 +F+ + LTATP I Y + + D P GV Sbjct: 400 YFNPFFMLGLTATPERMDGKDILELCDYNLIGEMGLREALEYDLLSPFHYF------GVI 453 Query: 667 LSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQK 726 + + G+ ++ L IP + N++ K Sbjct: 454 DDTVDYEQIPFSNGK-----------YDDKILGEKLSIPKRVDFIHNKIEKIGFDGDRVK 502 Query: 727 TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERL 786 ++ FC HA+ + E+ R L+ IT + RK +I F + Sbjct: 503 SIAFCANIKHAEFMKEQFR---------LKGYTTESITAKDSQLKRK--EVINAFQTGEI 551 Query: 787 PNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD 846 I+ VD+ G+DIP + ++FLR S ++ Q GR R NK I D + Sbjct: 552 -EILCVVDIFNEGIDIPDVNLLLFLRPTMSSTIFIQQLGRGLR--KVKNKDFVTILDFIG 608 Query: 847 IYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRI 906 + + + E L+NE+ ++ I A +++++K++ Sbjct: 609 NHK--KDYIITQAFSENTLNEKDRLLNEVR-NQFSDIPGASYIELDRICQDRIISKIENY 665 Query: 907 IGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIA 966 L+ R + + + +E+ ++ ++F + + F K I Sbjct: 666 NSLS-----RDNIVSEYLDFKNEIGREIDIIDFKDNTELFLRLKNKFGS--FVKTQKLIE 718 Query: 967 RLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYG----------DYDTPQDFLEAFDSLVQ 1016 +L D ++ +I ++ +S+ Y D + D +E F+S+ Sbjct: 719 KL-----DYYFSDEEEKIFEILEKNLSINYPYETLIIWLLHSLDRVSVSDVIEKFESVFF 773 Query: 1017 RSPNAQPALQAVINRPRDLTRKGL 1040 N + +I ++L+ L Sbjct: 774 VKINERIQYNLIIRAMKELSENDL 797 >UniRef50_A4IPV6 DNA/RNA helicase n=15 Tax=Bacillaceae RepID=A4IPV6_GEOTN Length = 815 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 120/643 (18%), Positives = 219/643 (34%), Gaps = 102/643 (15%) Query: 396 WYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPG---------MSELGLR 446 + + R N+S+ W EE+ +L SE +K+ + + + R Sbjct: 169 YEDNHRRHPNLSRT---WGETEEIELVLPSETEKKQEGETTDKADVVHETTAPYGTIRPR 225 Query: 447 YYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSL 506 + Q +A+ +E A +G + ++ MATG GKT A R F R+LF+ R + Sbjct: 226 FAQVEALERLEAAYEEGYDKAMVVMATGLGKTYLAAFFARR------FSRVLFIAHREEI 279 Query: 507 GEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL-VKRTLQSDEPMPV 565 QA +FE D I+D + + + A++ +L +K+ L S P Sbjct: 280 LRQAKQSFECVIP--DRTAGIYD-----GHQKDGNADMVFASIFTLSMKKHLFSFRP--- 329 Query: 566 ARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALH 624 +D IVVDE H +Y R+L +F + +TATP + Sbjct: 330 DSFDLIVVDEFHHA-------------------AARSYERVLRYFRPEFLLGITATPDRN 370 Query: 625 T-VQIF----GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ 679 ++ G YR + AV G+L P Sbjct: 371 DNKDVYAICDGNVAYRIDFIEAVQRGWL----APFHYYGVYDDTD--------------- 411 Query: 680 GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADM 739 + ++ + + + + Y +TLVFC + AD Sbjct: 412 ---YSQIKWLGSRYDEEELLQVQLREEMAENILRAWEQY----KKTRTLVFCSSIRQADF 464 Query: 740 VVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTG 799 + E R ++ + + Q I + L + + TVDL G Sbjct: 465 LCEYFRR-----------RGYRTVSLHSKQTTIPRQQAIAMLEQCEL-DAIFTVDLFNEG 512 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLE-SVDTMR 858 VDIPS+ ++F+R S ++ Q GR RL K I D + Y + + Sbjct: 513 VDIPSVDTLLFVRPTESLTVFTQQVGRGLRLYE--GKDYCVIIDLIGNYRNADVKLSLFD 570 Query: 859 PVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSE 918 K +++ V + E ++ + +R+ LA + + + E Sbjct: 571 TQRGETKKKVRESVMPTVPETCELHLDIQTIHLLEEMRKKRQPRKERL--LADYRQLKQE 628 Query: 919 T-IDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINN 977 L + A F S + W+ E+ + + E+ ++ Sbjct: 629 LGRRPTYLELHLHGRSEAAEYRQEFDSYVGFLY--WTGELSDLEKEVFLKHERWLIEVER 686 Query: 978 LNDAPIFLDIDDEVVSVKSLYGDYD--TPQDFLEAFDSLVQRS 1018 + + + + + + G ++ TPQ F + Sbjct: 687 TVMSKSYKMVVLKAMLERGSSGWHEPITPQQAAPFFHRYLTEK 729 >UniRef50_C8X332 Type III restriction protein res subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X332_DESRD Length = 979 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 106/549 (19%), Positives = 191/549 (34%), Gaps = 77/549 (14%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q +A+ + K + + + ATG GKT A F IQS + + LF+ R + Sbjct: 366 QGEALEGLLKLRNRKARSGAVIAATGVGKTYLAA---FDFIQSGK-DKCLFIAHREDILR 421 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY 568 +A +F +I K ++ A +Q+L ++ + E + Sbjct: 422 KAKESFSHVLGP-----EGLEIFSGRSKEISHGSRAVFAMIQTLGRQ--DNMERFHPEEF 474 Query: 569 DCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTVQ 627 D IV+DE H + YRR+LD+F + LTATP Sbjct: 475 DYIVMDEFHHA-------------------MAATYRRVLDYFQPDFLLGLTATPER---- 511 Query: 628 IFGEPVYRYTYRTAVIDG----FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVI 683 +DG +L D + ++ A + L+ + P Sbjct: 512 ---------------MDGRDVLWLCDYNIAYEMRLFQAIDKELLAPFQYFAVHDPTDYA- 555 Query: 684 NDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEE 743 D++ + + L + N L +L G K L FC + HA Sbjct: 556 -QISWKRTDYDQEELTKALANDTRTTIIANNLKKFLPYQGKIKALAFCSSVDHAQYTAAR 614 Query: 744 LRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLP-NIVVTVDLLTTGVDI 802 L + + GD+ +D R + + R +E P ++ VD+ G+DI Sbjct: 615 LTQE--------HDFEAMALVGDSSQDQR--EEAVARLEEENDPLKLICCVDIFNEGIDI 664 Query: 803 PSICNIVFLRKVRSRILYEQMKGRATRLCPEVN-KTSFKIFDCVDIYSTLESVDTMRPVV 861 P + +++ LR +S ++ Q GR R + + + D V + T + P+ Sbjct: 665 PKLSHVLLLRPTQSFTVFLQQLGRGLRKIQSEDVEKHLVVIDFVGNFRTAH----VAPLA 720 Query: 862 VRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETID 921 + +Q DSE K ++ D + + ++QRI + Sbjct: 721 LAGYTSIQEFTQ---DSEGSKESKLDLSNPPKGCFVSPDLEVQRIWESKLREIAPMSRAE 777 Query: 922 KQVRRLDELCQDAAGVNFN--GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLN 979 + DE+ QD ++ F + ++ PH + F + L NL Sbjct: 778 QLRALYDEVVQDLGLISPGLCEFYADPQKADPHAFIKYFGSWIKTKKAFKDLLDFEQNLL 837 Query: 980 DAPIFLDID 988 ++ Sbjct: 838 GTQGESFLE 846 >UniRef50_C2E648 Helicase n=4 Tax=Lactobacillus RepID=C2E648_LACJO Length = 970 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 109/575 (18%), Positives = 186/575 (32%), Gaps = 93/575 (16%) Query: 368 GKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEP 427 G + + +N + + W + + T+ +A LE + Sbjct: 157 GNYEWNLRLNSLSNAKITQELTFQIENEWNKAIPLTKEWYEAYK--------LEYKKIKK 208 Query: 428 QKQNQWFADNPGMSE--LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMM 485 + D + + Q+ A+ + K + L+ ATGTGKT + Sbjct: 209 KNNLDHLNDYQIADQNIIEPNLMQKAALGEIANLRRKDINKALIISATGTGKTYLGAFDV 268 Query: 486 FRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIH 545 + +R LF+V R + E AL +F IF + K Sbjct: 269 KNF----KPRRFLFVVHREQILEDALESFHKVIGGTKKEYGIFSGNDQSG----IKAKYV 320 Query: 546 VATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRR 605 AT Q+L K + + +D ++ DEAH S Y + Sbjct: 321 FATSQTLSKDI--NLKQFAKDEFDYVMFDEAHH-------------------LGASQYLK 359 Query: 606 ILDHFDA-VKIALTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQE 663 I ++F+ + +TATP IF Y Y + D P Q Sbjct: 360 IFNYFEPKFCLGMTATPERTDDFNIFKLFDYHIAYEIRLQDALENKMLAPFQYYG----- 414 Query: 664 GVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTG 723 VE + VI+DT LV + + Y Sbjct: 415 ---------VEDYVYEDHVISDTSSLS----------DLVADERVDYIIEQTKYYGYSGD 455 Query: 724 SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNK 783 L+FC N A+ + E LR + ++G D + R ++ K Sbjct: 456 ILHGLIFCSRNKEAEELAESLRQ---------KGIQAKSLSGKDDVETR--DEVVEELEK 504 Query: 784 ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843 ++ N +VTVD+ G+DIP I IV LR +S I++ Q GR R P K + D Sbjct: 505 GKI-NYIVTVDIFNEGIDIPCINQIVLLRSTKSSIVFVQQLGRGLRKFP--GKDYLTVID 561 Query: 844 CVDIYSTLESVDTM-------------RPVVVRPKVELQTL-VNEITDSETYKITEADGR 889 + Y + + V P + + + Y+ Sbjct: 562 FIGAYDNNYMIPMALSGDKSHNRDNLKDDLEVEPIYGVSVINFTHVAKERIYESINHSNL 621 Query: 890 SFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQV 924 + + + + ++I + ++ +ID QV Sbjct: 622 TVKRKLRNEYLNEKKKIGRIPMMADLQANSIDCQV 656 >UniRef50_UPI00019764F2 DNA or RNA helicase of superfamily II n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019764F2 Length = 1061 Score = 235 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 112/639 (17%), Positives = 215/639 (33%), Gaps = 73/639 (11%) Query: 393 SGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGM---SELGLRYYQ 449 +G VRD + A + EE ++ + +K D E+ Q Sbjct: 194 NGELVAQVRDEIDSQIADSKPLT-EEWIKQYEEDFKKYAPPRRDILKSLEGREIQPNAMQ 252 Query: 450 EDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQ 509 ++A+ +++K +G+ ++ ATGTGKT + + + R +R+L++ ++ + + Sbjct: 253 KEALASLKKLREQGEHRAIIVSATGTGKTYLSAFDV----REYRPRRMLYIAQQQMILKA 308 Query: 510 ALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYD 569 A+ +++ + ++ T + + ATVQ++ R ++ +D Sbjct: 309 AMKSYQKVLGCPQSELGLY-----TGTSKQQDRRYVFATVQTM--RQPEALAQFASDEFD 361 Query: 570 CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DA-VKIALTATPALHT-- 625 ++VDE H Y+R++DHF DA + +TATP Sbjct: 362 YVLVDEVHHAG-------------------AEGYQRVIDHFRDADFMLGMTATPERTDGI 402 Query: 626 --VQIFGEPV-YRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEV 682 ++FG + Y + A+ + L P G + + R+ + Sbjct: 403 NIFELFGHNIAYEIRLQKALDENMLC----PFHYYGVAEYLGSDEDADQDMHRLDV-SQG 457 Query: 683 INDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVE 742 ++ +E+ R + ++L Y LVFC A + Sbjct: 458 LDAKESKQLKYEIGQL----ATEQRVRYIIDKLQEYGQFGIPVTGLVFCSRQEEAHELSR 513 Query: 743 ELRAAFKKKY--PQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGV 800 + ++ P K K + R L + + TVD+ GV Sbjct: 514 LFNEHWNQQAERPYRTAAVTSKDVNGKPLSQEKRDEYVRRLTDGEL-DYLFTVDMFNEGV 572 Query: 801 DIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYS----------- 849 DIP++ IV LR S I++ Q GR R P K S + D + Y+ Sbjct: 573 DIPAVNQIVMLRSTESSIIFTQQLGRGLRKFPY--KDSVVVIDFIGNYNNNYLIPVALYG 630 Query: 850 TLESVDTMRPVVVRPKVELQTL-VNEITDSETYK---ITEADGRSFAEHSHEQLVAKLQR 905 D R + R + L ++ + I K + + Q+ +L R Sbjct: 631 NTGDRDRARKNLQRKSIGLSSISFDPIAKERVLKSLDTADWSEMKKLSEQYRQVRYELGR 690 Query: 906 IIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFI 965 I L + + + E + + Sbjct: 691 IPMLMDIYAYDPSLPYTLATKRSNYLDFVRSREKSLGGGKNHETTFEDQLDPVTDTEDAV 750 Query: 966 ARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTP 1004 K+ T++ P L I + + + D +TP Sbjct: 751 L---KMATELLLPGLRPHELAILERLCRLAEERLDDETP 786 >UniRef50_Q1QZA7 Type III restriction enzyme, res subunit n=5 Tax=Gammaproteobacteria RepID=Q1QZA7_CHRSD Length = 613 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 102/453 (22%), Positives = 162/453 (35%), Gaps = 78/453 (17%) Query: 438 PGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRI 497 MS LR YQ AV V +G ++ + TG+GK+ + RL + R+ Sbjct: 2 SRMSAPSLRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLVIAELA-RLARG----RV 56 Query: 498 LFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 L L R L EQ + + D F++ E ++ +VQS+V+ Sbjct: 57 LVLAHVRELVEQNHAKYRAYGLEADLFSAGLG-------RKESERQVVFGSVQSVVRSLE 109 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA----- 612 + + + +V+DE HR S+Y +++ H Sbjct: 110 RFEAHEAWGAFTLLVIDECHR------IPPGASAGKVRDDKGASSYHQVIAHLRRHNPRL 163 Query: 613 VKIALTATPALHTVQI-----------------FGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 + LTATP F + V+ R V G+L Sbjct: 164 KVLGLTATPYRLGQGFIYHRHHHGMVRGDADCFFQDCVFEQPLRLMVKQGYLAPP----- 218 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNEL 715 R +Y GEQ + + + FE A+ NR + +RA + Sbjct: 219 ---RRVDAALYAEDGEQ-----TRYDFSRLSPGRGGGFEEAELNRVV---QGHRATPGII 267 Query: 716 TNYLDPTGSQKT-LVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV 774 ++ ++ ++F T AHA ++ L P + I+ T R+ Sbjct: 268 AEVVEQARERRGVMIFAATVAHAREIMGYL--------PAQQAALIVGAT-----PGRER 314 Query: 775 QTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV 834 + +I F +RL +V V +LTTG D P + I LR S LY+Q+ GR RL P Sbjct: 315 EALIEDFKAQRL-KYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP-- 371 Query: 835 NKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVE 867 K I D D P V P+ + Sbjct: 372 GKQDCLILDYAGN-----PWDLYAPEVGEPRPD 399 >UniRef50_B1XZH6 Type III restriction protein res subunit n=2 Tax=Proteobacteria RepID=B1XZH6_LEPCP Length = 1058 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 121/615 (19%), Positives = 222/615 (36%), Gaps = 86/615 (13%) Query: 439 GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQ-SQRFKRI 497 +L + YQ++ + + G+ LL ATGTGKT A + R+ Sbjct: 325 SFFDLQPKTYQQEMLEQLITERSHGRNRNLLVAATGTGKTVVAAFDYRNTCRVEGGRPRL 384 Query: 498 LFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 LF+ R + QAL + + + F + +++ AT+ S+ R L Sbjct: 385 LFVAHREEILRQALRTYREV-LRDPEFGDLLTGGNQPERW-----DHLFATIDSVTSRDL 438 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIAL 617 + + + +VVDE HR L +V + R +V + L Sbjct: 439 VT--TVGADHWHTVVVDECHR------------LAADRFDAFVKSVRP------SVLLGL 478 Query: 618 TATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 TATP G+P+ +Y A DG P I++ +A + L E + Sbjct: 479 TATPERSD----GQPIAQYF--DARPDG-----SPAIELRLWHALD---LQLLAPFEYYA 524 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLV-IPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAH 736 + D+ E ++ + R V NE + + +VFCV+ AH Sbjct: 525 CDDGTDFSAVPWDKPGEREAVDKLVTGNDVRARLVVNEWRRLASDASTSRAIVFCVSVAH 584 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLL 796 A+ + + A A + T ++ R Q ++ +VTVDL Sbjct: 585 AEFMTDRFNRAGLPA-------ACVVGTTAIEERRRAPQRLL-----SGELCALVTVDLY 632 Query: 797 TTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT 856 G+D+P + ++ LR +S +L++Q GR RL P K S + D V + T D Sbjct: 633 NEGIDLPMVDTLLLLRPTQSPVLFQQQIGRGLRLAP--GKESCLVLDFVGQHRTEFRFDR 690 Query: 857 M---------RPVVVRPKVELQTLVNEITDS---ETYKITEADGRSFAEHSHEQLVAKLQ 904 + R +V + +L +T + R+ + +L +LQ Sbjct: 691 LLSSLTGLSRRELVDGVENGFGSLPPGCHIHLQRQTREQVLQGLRALTTQNWRRLKTELQ 750 Query: 905 RIIGLATFNRDR-SETIDKQVRRLDELCQDAAGVNFNGFASRLREKG-----PHWSAEVF 958 + L R ++ + Q L+++ + G +G+ + R+ G P + F Sbjct: 751 TYVALKGRASVRLADFLHDQALELEDIYRAGTGQGRSGWTALKRDAGLIVAEPGPEEDYF 810 Query: 959 NK---------LPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLE 1009 ++ P + + + + + ++++ + E Sbjct: 811 SRRFADLLHVDDPRRLDMMAAVGARQGDSEVLDTKSALGVQMLAYQIDGRHAQAAGH--E 868 Query: 1010 AFDSLVQRSPNAQPA 1024 AF + R P A A Sbjct: 869 AFAERLARHP-AIAA 882 >UniRef50_D1BPC6 Type III restriction protein res subunit n=2 Tax=Veillonella parvula RepID=D1BPC6_VEIPT Length = 967 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 91/484 (18%), Positives = 160/484 (33%), Gaps = 93/484 (19%) Query: 376 FCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFA 435 F N + R VR R + + E R +LL++ Sbjct: 161 FDLYWNSKFSIPYEDFIPWYKPRWVRPERTSQRTVAEQFRKIDLLQL------------- 207 Query: 436 DNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK 495 Q+ + + + LL TGTGKT A ++ R K Sbjct: 208 --------EPNSMQQQFIANFNELRANNAKRGLLISGTGTGKTYAAAFA----MREMRPK 255 Query: 496 RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKR 555 RILFLV R + +QA+ +FE + ++ + +T+Q + + Sbjct: 256 RILFLVHREQIAKQAIASFERIYNDPS-----ITFGLVSGNAKYYNATHVFSTMQMMGRN 310 Query: 556 TLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VK 614 + +DCI++DE HR +Y+RI+++F+ Sbjct: 311 DVMK--QYAPKEFDCIIIDEVHRAGSD-------------------SYQRIIEYFEPQFL 349 Query: 615 IALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 + +TA+P Y L D + +I + A E L Sbjct: 350 LGMTASPERTDG---------YDLYE------LFDHNIIYEIRLQQALEEDLLCPFHYFG 394 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 + D + + F L + ++ + K LVFC Sbjct: 395 ISDLWVDTQEDISDMEVSFSN------LSTKERVDKIIEKIRYFGHSGSRVKGLVFCSNR 448 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRF--------NKERL 786 A + + + + +TG+ ++ R++ I R + Sbjct: 449 VEAKALSDAFNE--------RDVYRTVCLTGEDSQETREI--AIARLTGTGDYQGRSDLQ 498 Query: 787 PNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD 846 + + TVD+ GVDIP I ++ LR+ S I++ Q GR R +K I D + Sbjct: 499 LDYIFTVDIFNEGVDIPEINQVIMLRQTESPIIFIQQLGRGLRKFE--DKEYVVILDFIG 556 Query: 847 IYST 850 Y+ Sbjct: 557 NYTN 560 >UniRef50_B8J8P5 Type III restriction protein res subunit n=2 Tax=Anaeromyxobacter dehalogenans RepID=B8J8P5_ANAD2 Length = 1033 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 115/593 (19%), Positives = 196/593 (33%), Gaps = 76/593 (12%) Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVE-KAIVKGQQEILLAMATG 474 P+ + + + ++ + A P +L YQ + + + G+ + L+ ATG Sbjct: 285 PDAVRRLKAALSSERGERGAATPFFFDLRPYEYQRAILEKLRVEREEHGRWKNLVVAATG 344 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLT 534 TGKT A ++ R+LF+ R + EQAL AF + + +F + L Sbjct: 345 TGKTMIAAFDYAAQVKDGVRPRLLFVAHREEILEQALHAFRNV-LRDHSFGEL-----LK 398 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 S + AT+QSL ++ L + + + ++VDE H Sbjct: 399 GGSTPASYEHLFATIQSLDRKDLPA--ALGRDYWHTVIVDEFHHA--------------- 441 Query: 595 SQLDYVSAYRRILDHFDA-VKIALTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDP 652 Y +L+ + + LTATP + + G + + Sbjct: 442 ----AAKTYGLLLEAVAPKILLGLTATPERADGLDVLGWFDHHVAADIRLWHALEKQLLA 497 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC 712 P + +GV L E D D+ + D R V Sbjct: 498 PFEYYG--VADGVSLEGVE-------WRRGGYDLGGLDKVYTGND--------ERARLVV 540 Query: 713 NELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDAR 772 ++L + + L FCV+ AHA+ + A + I G D D R Sbjct: 541 SKLRELHGHPETARGLGFCVSVAHAEFMARRFTEA---------GIPSLVIHGATDADER 591 Query: 773 KVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 + + + + T DL GVD+P + ++ LR S L+ Q GR RL P Sbjct: 592 --DEAPRKLERGEVA-FLFTCDLYNEGVDLPFVDTLLLLRPTESATLFLQQLGRGLRLHP 648 Query: 833 EVNKTSFKIFDCVDIYSTLESVD-TMRPVVVRPKVELQTLVNEITD----------SETY 881 KT + D + D + + P+ LQ V Sbjct: 649 --GKTQALVLDFIGQQRAEYRFDRKLTAMTGIPRGHLQRAVQGGFPTLPSGCHLQLERVA 706 Query: 882 KITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAG--VNF 939 + D A + +A+ + + E +D R LD++ + Sbjct: 707 REIVLDNLRQAIRGGQGRLAQELKALARERPRITLGEFLDATGRELDDVYSSSVRGWTTL 766 Query: 940 NGFASRLREKGPHWSAEVFNKLPGF--IARLEKLKTDINNLNDAPIFLDIDDE 990 A L GP ++ I E+L+ + LD DE Sbjct: 767 RRAAGLLPAAGPEGEERTSRRMGNLTHIDEPERLRLYRRLAVEPTARLDASDE 819 >UniRef50_C5NW00 DNA repair helicase Rad25 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NW00_9BACL Length = 937 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 122/635 (19%), Positives = 222/635 (34%), Gaps = 100/635 (15%) Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFAD-----------NPGMSELGLRYYQEDAVRAVEK 458 L E++ L E S + ++++ + E+ Q + EK Sbjct: 146 LDEFNS---LWEKSKSYSEIKDKYVEEFASNQIETVTKKIISEEIKPNKMQRSFIENFEK 202 Query: 459 AIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTR 518 + + LL ATGTGKT A ++S KR+LF+V R + QAL F+ Sbjct: 203 LRNQD-NKGLLISATGTGKTFAAAFA----MKSIGAKRLLFIVHREQIARQALETFKTI- 256 Query: 519 INGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHR 578 F + LT K +TVQ++ K + + +D I++DE HR Sbjct: 257 -----FGTSRSYGLLTGKEKNIEADFIFSTVQTMSKEDIFKS--FNDSHFDEIIIDEVHR 309 Query: 579 GYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHT----VQIFGE-P 632 +Y R++D+F + +TA+P ++F Sbjct: 310 AG-------------------ADSYLRLMDYFKPTFYLGMTASPDRTDSFNIYELFNNNI 350 Query: 633 VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQD 692 VY + A+ + L P + + G+VI+ Sbjct: 351 VYEVRLKEAMENSLLC----PFHYFG--------------ISDLEVDGKVID-------- 384 Query: 693 FEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKY 752 E+++F+ LV + +++ Y K LVFC + A ++ EE Sbjct: 385 -ELSEFSN-LVSNERVEHIISKINYYGYSGDRVKGLVFCSSKQEAKVLSEEFNT------ 436 Query: 753 PQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLR 812 +TG+ ++ R+ + N + + + TVD+ GVDIP + ++ LR Sbjct: 437 ---RGYNTTSLTGEDSQERREHEISKLVANDGDMLDYIFTVDIFNEGVDIPEVNQVIMLR 493 Query: 813 KVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVEL-QTL 871 +S I++ Q GR R NK I D + Y + + PV + + Sbjct: 494 PTQSFIIFIQQLGRGLR--KSANKDFVVIIDFIANYKN----NFLIPVALSGDNSYDKDT 547 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELC 931 V + T I F E S +++ + + + ++ +K +L ++ Sbjct: 548 VRKFLSQGTRYIPGMSTIHFDEISKQRIYSAIDNVKLNTWLFV--ADEYNKLKNKLGKIP 605 Query: 932 QDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDI--DD 989 + N++ R + K KL N+ + I Sbjct: 606 TYSDFENYDAIDVRKIFEVAGSYYSFLTKKEKQFEYSGKLTKTAENMLNFVSTNLILSKK 665 Query: 990 EVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPA 1024 + D ++ L AF+ ++ R N A Sbjct: 666 IEELIILRLLLDDKKRNILTAFEEIMLRDYNKFIA 700 >UniRef50_A3CSN2 Type III restriction enzyme, res subunit n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CSN2_METMJ Length = 1062 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 103/544 (18%), Positives = 196/544 (36%), Gaps = 77/544 (14%) Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIV-KGQQEILLAMA 472 + PE E L K+ + D + ++ YYQ++ + ++ + L+ A Sbjct: 303 YTPES-RERLQRALSKERRSEIDLRPIFDIRPYYYQKEILERLKAERELHNNYKNLIVAA 361 Query: 473 TGTGKTRTAIAMMFRLIQ-SQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIK 531 TGTGKT + L Q + R+LF+ R + +Q++ F + F + Sbjct: 362 TGTGKTVISAFDYKSLFQRPGEYPRLLFVAHREEILKQSIQVFRGV-LKDQNFGDL---- 416 Query: 532 GLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGEL 591 L + ++QSL R L E P YD ++VDE H Sbjct: 417 -LVGGSEPAQIEHLFTSIQSLNSRNL--PEITPPDYYDMVIVDEFHHA------------ 461 Query: 592 QFRSQLDYVSAYRRILDHFDA-VKIALTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLID 649 +Y+R+L ++ V + LTATP + I + + + + Sbjct: 462 -------AAPSYQRLLSYYTPGVLLGLTATPERTDNLDILEYFNEKISAEIRLPEAINRK 514 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV-IPAFN 708 P + ++ ++ A+ +R Sbjct: 515 LLAPFHYFGVTDVVDLDTVPWKR------------------GTYDPAEISRLYTGNQQRA 556 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDAD 768 + + +Y L FCV+ HA+ + RAA Sbjct: 557 DLIIRAVQDYTTDLHEIIGLGFCVSVEHAEYMAAAFRAAGVPAACLHAG----------- 605 Query: 769 KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 +R+ ++ I + +R + + VDL GVDIP + I+FLR S ++ Q GR Sbjct: 606 -SSREERSTIQKRLVDRKIHFIFVVDLYNEGVDIPEVNTILFLRPTESLTVFIQQFGRGL 664 Query: 829 RLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADG 888 RL K + D V ++ ++ P +TLV +++ ++Y + + Sbjct: 665 RLSD--GKECLTVLDFVGNHNKNFPFGERIAALLSPGG--KTLVEQVS-RDSYSLPKGCY 719 Query: 889 RSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLRE 948 F E + E+++A ++ I +R+ I +++R ++ + + F F R Sbjct: 720 IHFEEKARERVLANIRANI------TNRATLI-RKIRSFEDETGE--PLTFKKFLQRYSL 770 Query: 949 KGPH 952 + Sbjct: 771 QPLD 774 >UniRef50_C6E151 Type III restriction protein res subunit n=3 Tax=Deltaproteobacteria RepID=C6E151_GEOSM Length = 1042 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 102/497 (20%), Positives = 174/497 (35%), Gaps = 67/497 (13%) Query: 421 EMLGSEPQKQNQWFADNPG-MSELGLRYYQEDAVRAV-EKAIVKGQQEILLAMATGTGKT 478 + + + DNP +L +QE + A+ + + L+ ATGTGKT Sbjct: 285 TLFRTAINRARHRSQDNPAIFFDLRPHPFQERILEALARERTSHDRWRNLVIAATGTGKT 344 Query: 479 RTAIAMMFRLIQSQRFK-RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 A +++R + R+LF+ R + ++A G F + + F + L ++ Sbjct: 345 VIAAFDFKNFFEAKRRQARLLFIAHRLEILQKAQGTFRNV-LRDQNFGEL-----LVGEY 398 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 + +V L R L E + YD IV+DEAH Sbjct: 399 QAVRLEHLFCSVGMLANRRL--WEQVGSGFYDYIVIDEAHHS------------------ 438 Query: 598 DYVSAYRRILDHFDA-VKIALTATPAL----HTVQIFGEPVY-RYTYRTAVIDGFLIDQD 651 S+YR I ++F + + LTATP + FG A+ + L Sbjct: 439 -TASSYRPIFENFAPEILLGLTATPERMDGGNVAADFGNRFAAEIRLPEALEEKLLC--- 494 Query: 652 PPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAV 711 P GV E+ G+ LE+ + + A+ Sbjct: 495 -PFHYF------GVADPIAISGEQFWRNGKYNESALENVYVMDN------VRAKQRVDAI 541 Query: 712 CNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 LT Y + K + FCVT HA + E+ + A + D Sbjct: 542 ITALTRYEPDLSNVKGVGFCVTIRHAHFMAEQFSK------RGIPSGAFVSGVEDD---- 591 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 + ++ + RL + TVD L+ GVDIP + ++FLR S ++ Q GR R Sbjct: 592 -RCSKLLEDLSTGRL-TFLFTVDKLSEGVDIPLLNTVLFLRPTESLTVFLQQLGRGLRHA 649 Query: 832 PEVNKTSFKIFDCVDIYSTLESVD-TMRPVVVRPKVELQTLVNEITDSETYKITEADGRS 890 P K + D V D ++ ++ R + + V + R Sbjct: 650 P--GKDCLTVIDLVGQAHRRYRADIKLKALMPRHRYSIDREVEADFPHLPSGCSIQLDRL 707 Query: 891 FAEHSHEQLVAKLQRII 907 ++ + + R+ Sbjct: 708 SRKYILDNIRENFGRLA 724 >UniRef50_B5IP85 Type III restriction enzyme, res subunit n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IP85_9CHRO Length = 1060 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 110/525 (20%), Positives = 184/525 (35%), Gaps = 79/525 (15%) Query: 435 ADNPGMSELGLRYYQEDAVRAVE-KAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQR 493 + P +L YQ + + + + + + L+ ATGTGKT A + RL Sbjct: 310 SAAPVWFDLRPYAYQREMLDQLAAERSLHHRWHNLVVAATGTGKTVLAAFDVARLHADFP 369 Query: 494 FK-------RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHV 546 + +L + R+ + +QAL F + +F ++ D + Sbjct: 370 ERFPSPDPPPLLLIAHRKEILQQALATFRQV-LRDPSFGELW-----VDGERPSQWRHVF 423 Query: 547 ATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRI 606 A+VQSL + Q +P R+D ++VDE H ++Y R Sbjct: 424 ASVQSLSQ---QDTAEIPADRFDVVIVDEFHHA-------------------AAASYLRW 461 Query: 607 LDHFDA-VKIALTATPAL----HTVQIFGEPVY-RYTYRTAVIDGFLIDQDPPIQIITRN 660 LDH + + LTATP + FG + +A+ G L P Sbjct: 462 LDHITPKLLLGLTATPERADGLDILHWFGGRIAAELRLWSALDQGLL----SPFHYFA-- 515 Query: 661 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD 720 + LS E E+ D + +EL L Sbjct: 516 VADATDLSALEWRRGGYVPAELSTLYTGD---------------HRRVDLILSELDKKLA 560 Query: 721 PTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITR 780 + L FCV+ HA + E RA L +A+ DA A + + R Sbjct: 561 DPSRMRALGFCVSVEHAHFMAERFRA------RGLNAEAL-----DASSPADVRRDALRR 609 Query: 781 FNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK 840 L I+ VDL G+DIP+I ++ LR S +++ Q GR RL PE K+ Sbjct: 610 LQNGEL-QILFAVDLFNEGLDIPAIDTVLLLRPTESAVVFLQQLGRGLRLSPETGKSCLT 668 Query: 841 IFDCVD-IYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQL 899 + D + + R ++ + +L+T + + R ++ + L Sbjct: 669 VLDFIGQQHRRFRFDLRYRALLGGSRRQLETQLEQGFPFLPPGCRLVLDRVASQRVLDNL 728 Query: 900 VAKL--QRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGF 942 L +R + +E + L + DA G+ F Sbjct: 729 RQSLPSRRPQLIEELRALAAEGVIGPASGLADWL-DALGMEPAEF 772 >UniRef50_A5F3B5 Helicase-related protein n=24 Tax=Gammaproteobacteria RepID=A5F3B5_VIBC3 Length = 979 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 92/459 (20%), Positives = 160/459 (34%), Gaps = 74/459 (16%) Query: 449 QEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGE 508 Q +A+ A+ +G L+ +ATG GKT A + + ++LF+ R + Sbjct: 222 QVEALTALNATRAQGFSRGLVVLATGMGKTWLAAFDALQ----TQSTKVLFVAHREEILL 277 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTK-IHVATVQSLVKRTLQSDEPMPVAR 567 QA F N T GL + +++ + A+V ++ K+ + Sbjct: 278 QAEKTFCQLIPNAKT--------GLYNGVTQNTQAMLLFASVATIGKQNH--LQRFAADH 327 Query: 568 YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHT- 625 +D IVVDE H +YR +L +F + LTATP Sbjct: 328 FDYIVVDEFHHA-------------------AARSYRNLLTYFKPKFLLGLTATPERSDQ 368 Query: 626 VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND 685 I + ++ G +I+ G+Y E G+ Sbjct: 369 ADILSLCDSNLVFERNLVHGI------DEKILVPFDYHGIYDQAVNYQEIPWRNGK---- 418 Query: 686 TLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELR 745 F+ + L V + +TL FCV+ HAD + E Sbjct: 419 -------FDPDSLDNALATQRRAEHV----YQHWHQKKQTRTLAFCVSKKHADFMAEFC- 466 Query: 746 AAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSI 805 I I +D R+ Q + + ++ +I+ +VDL G D+P+I Sbjct: 467 ----------LSKGIKAIAVYSDSKVRRNQA-LQWLDSGKI-DILFSVDLFNEGTDLPAI 514 Query: 806 CNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPK 865 I+ LR S+IL+ Q GR R E K+ + D + + + + RP + Sbjct: 515 DTILMLRPTESKILFLQQLGRGLRRSIETQKSKLVVIDFIGNHDSFLN----RPTTLYNV 570 Query: 866 VELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQ 904 L+ + + + +QL K++ Sbjct: 571 SHLKDALAKHQQQALPDGCHVTFDITLLNFWQQLTRKMR 609 >UniRef50_C8WYC9 Type III restriction protein res subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WYC9_ALIAD Length = 581 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 111/563 (19%), Positives = 184/563 (32%), Gaps = 85/563 (15%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKR-ILFLV 501 + LR YQ+ AV A +A+ +G++ L+ + TG GKT ++ R + +R IL + Sbjct: 3 IQLRPYQQAAVDAFFQALAEGRKRQLIVLPTGAGKTIVFGSVARRFHEEVSRERPILVIA 62 Query: 502 DRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE 561 R L +QA I + E + +A+ Q+LV Sbjct: 63 HRTELLDQAEQKIHFVWPEAF-------IGRIQGARNEQLGDVLLASTQTLVAGRRIPQP 115 Query: 562 PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP 621 I+ DE H L + + + +TATP Sbjct: 116 G-------LIIYDECHHSRAEGALGVLERLG-------------VFESDGPPLLGVTATP 155 Query: 622 ALHT----VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 + IF Y T ++DG+L D +G +VE Sbjct: 156 SRSDRTELGDIFEHLTYERTILDMIMDGYLSDV------------------RGVKVEVPG 197 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHA 737 I T D+ D + + I + AV + + + +K LVF V HA Sbjct: 198 LNLGAIRTTA---GDYNSKDLSYVMNIESALDAVVDAVVTH---APGRKCLVFAVDVKHA 251 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 + E + I D A + ++ F + RL ++V +LT Sbjct: 252 HALAERFQK-----------RGIACAAVDGAMKAEERAAILQAFAENRL-CVLVNCQILT 299 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTM 857 G D P + +V R RS+ LY QM GRA RL P +KT + D +S+ T Sbjct: 300 EGYDQPDVDCVVIARPTRSQALYVQMVGRALRLHP--DKTDALVLDLTGASDD-KSLQTF 356 Query: 858 RPVVVRPKVELQTLVNEITDSETYKITEADGRSFAE-----HSHEQLVAKLQRIIGLATF 912 ++ + + + E E DG S E +L ++ + I L Sbjct: 357 ARLMRTQRKTATHALVGAEEGEDAVPME-DGESVGEWLTRVAQKRELAEQVAQAINLFAN 415 Query: 913 NRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLK 972 K A +G+A R+ W L Sbjct: 416 RSRYRWVRVKDNF--------AIAYGHDGWAYLYRDGDEFWPVLELKNEKFMPLHDRSLP 467 Query: 973 TDINNLNDAPIFLDIDDEVVSVK 995 + + +++ + Sbjct: 468 LEYAQGVVEGFLSLFESSLITKE 490 >UniRef50_C7GA84 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=Clostridiales RepID=C7GA84_9FIRM Length = 993 Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 96/443 (21%), Positives = 157/443 (35%), Gaps = 66/443 (14%) Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 +E +++ + + + L Q + ++K + G++ LL ATGTG Sbjct: 196 KERYQIIKHQRETAKLDEITSIEKYTLQPNSMQVGFITNLKKILAAGEKRALLISATGTG 255 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK 536 KT + M L F+R+LFLV R L Q ++E F + + + Sbjct: 256 KTYASAFAMREL----GFRRVLFLVHRGQLARQTRKSYEKV------FANTVSMGLVGAG 305 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 + E ATVQ+L + + +DCIV+DEAH Sbjct: 306 YHEYEADYVFATVQTLNR--DEHLLQYAKDAFDCIVLDEAHH------------------ 345 Query: 597 LDYVSAYRRILDHFDAVK-IALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 YR+I+DHF + +TATP + G VY + Sbjct: 346 -VPADTYRKIMDHFTPKLWLGMTATPDKRDDNVEGRNVY--------------------E 384 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNEL 715 I + L + + + P L D E A L R + N+ Sbjct: 385 IFNYQIAYEIRLQQAMEENLLCPFHYFGITDLSMIGDEEAARDFNMLTSDERVRHIVNQA 444 Query: 716 TNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQ 775 Y K L+FC EEL A F + + + ++ Q Sbjct: 445 DYYGYSGDKVKGLIFCSNIKE----TEELSAKFNQIINPATGKNFRTVALNGSASEQERQ 500 Query: 776 TMITRF-------NKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 R +++R P + + +V++L GVDI + ++ LR +S I++ Q GR Sbjct: 501 DAFERLAMNEDESSEDRQPLDYIFSVEILNEGVDIVEVNQVIMLRPTQSPIVFIQQLGRG 560 Query: 828 TRLCPEVNKTSFKIFDCVDIYST 850 R K I D + Y+ Sbjct: 561 LR--KASGKEYVVILDFIGNYNN 581 >UniRef50_Q1PKZ5 DNA repair helicase rad25 n=2 Tax=cellular organisms RepID=Q1PKZ5_PROMA Length = 976 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 93/453 (20%), Positives = 164/453 (36%), Gaps = 71/453 (15%) Query: 403 TRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP--GMSELGLRYYQEDAVRAVEKAI 460 TR SK + R E + E ++ NQ + S + Q++A+ +E Sbjct: 176 TRYFSKGIKVSERFLNEYEQVYGEIKRVNQSVSTKKIDKFSPIEPNVMQKEALINLENLR 235 Query: 461 VKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRIN 520 ++ LL AT TGKT + KR+LF+V R ++ ++A+ +FE + Sbjct: 236 RANVKKALLISATATGKTYLSAFDAKNF----NAKRVLFIVHRWNIAKKAMESFEKIFGD 291 Query: 521 GDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGY 580 T+ + ST + ++ Q+L K +D I++DE HR Sbjct: 292 ERTYGLYKGSINDINFDFIFSTNLTISNSQNLNK--------FSPDFFDYIIIDETHRAG 343 Query: 581 ILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHT-VQIFGEPVYRYTY 638 S Y++I+++F + +TA+P IF + Y Sbjct: 344 -------------------ASTYQKIINYFSPKFLLGMTASPERTDGFDIFKLFDHNIAY 384 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADF 698 + + P + ++ GE+I+ E +DF Sbjct: 385 EIRLQKAMEAELVVPFHYFG--------------ITDLNINGEIID---------EKSDF 421 Query: 699 NRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 N+ L+ + + Y + +VFC A + + L+ Sbjct: 422 NK-LICDERVERILDISDKYGCDDNIIRGIVFCSRKDEAYELANKFN---------LKGR 471 Query: 759 AIIKITGDADKDARKVQ-TMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 I +TG +D R+ + N E + VD+ G+DIP I I+ LR +S Sbjct: 472 KSITLTGSQSEDERENAIQQLESDNLEEKLEFIFAVDIFNEGIDIPRINQIIMLRPTQSN 531 Query: 818 ILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST 850 I++ Q GR R + K + D + Y Sbjct: 532 IIFIQQLGRGLRRFEK--KEYLTVIDFIGNYQN 562 >UniRef50_A0JTK4 Type III restriction enzyme, res subunit n=17 Tax=Actinomycetales RepID=A0JTK4_ARTS2 Length = 1063 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 110/553 (19%), Positives = 183/553 (33%), Gaps = 74/553 (13%) Query: 462 KGQQEILLAMATGTGKTRTAIAMMFRLIQS-QRFKRILFLVDRRSLGEQALGAFEDTRIN 520 KG LL ATGTGKT A RL ++ R ++LF+ R+ + +QA+ + D + Sbjct: 342 KGFNHNLLVAATGTGKTVIAALDYKRLCEAAGRDLKLLFVAHRQEILKQAMRTYRDVMQD 401 Query: 521 GDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGY 580 G F ++ + + P I A+VQSL ++ EP +D +V+DE H Sbjct: 402 GA-FGELY----VGEHKPAQWKHI-FASVQSLSSLGIEQLEP---DFFDVVVIDEFHHA- 451 Query: 581 ILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI-ALTATPALHTV-----QIFGEPVY 634 YRR+LDH ++ LTATP Q F Sbjct: 452 ------------------MAPTYRRLLDHLQPQQLLGLTATPERGDGVDVAKQFFDGRTA 493 Query: 635 RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFE 694 + D D P + V LS+ E DT + + + Sbjct: 494 S---ELRLWDALDADLLVPFHYFG--VSDDVDLSQLE-------WKRGNYDTTQLNNLYT 541 Query: 695 VADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ 754 D A V EL + + T + + FCV+ HA + E A Sbjct: 542 GND--------ARAAKVIRELRDKVTSTDQMRAIGFCVSVQHAHYMAEVFNRA------- 586 Query: 755 LEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKV 814 I + D D + R + R N + VDL G+D+P + I+ LR Sbjct: 587 ----GIASVAVDGSTDDADRAAALERLRR-REINCIFAVDLYNEGLDLPQVDTILLLRPT 641 Query: 815 RSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD-TMRPVVVRPKVELQTLVN 873 +S ++ Q GR R K + D + D R + + EL+ V Sbjct: 642 QSATIFLQQLGRGLRRAE--GKAVLTVMDFIGQQRREFRFDLRYRALTGYRRKELEKAVE 699 Query: 874 EITDSETYKITEADGRSFAEHSHEQLVA--KLQRIIGLATFNRDRSETIDKQVRRLDELC 931 + R + + + A + R + ++ + + Sbjct: 700 DEFPYLPSGSQIVLDRVAQKVVLDNIKAQLRFNRAQLVRDIASYAETELEAYLEQSRNDV 759 Query: 932 QDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEV 991 + + + LR+ G + R+++L + I + Sbjct: 760 KSIYRSTRDSWTGYLRQAGLIEGFSPLEAV--LSGRIKELSDADEKKLLGRMAALIHVDD 817 Query: 992 VSVKSLYGDYDTP 1004 Y +P Sbjct: 818 PERAEAYSMLVSP 830 >UniRef50_A8PUJ3 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PUJ3_MALGO Length = 667 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 101/540 (18%), Positives = 195/540 (36%), Gaps = 63/540 (11%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQ-QEILLAMATGTGKTRTAIAMMFRLI-QSQRFKRILFL 500 + LR YQ++ V A A+ + I ++ TG+GKT + ++ R+ + L L Sbjct: 38 VKLRPYQQECVDACIDALERKHLTRIGVSAPTGSGKTTMFLELVSRIFSREANTSHALIL 97 Query: 501 VDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD 560 V+ +L +QA + + D+ I VATVQ+L R + Sbjct: 98 VNGITLAQQAAERAKRMFP-----HMTVDMDQGARHVASGEADITVATVQTL--RQPKRL 150 Query: 561 EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTAT 620 ++ C++VDEAH +Y +L HF + Sbjct: 151 AKYNPHKFKCVIVDEAHHSTS-------------------PSYLSVLSHFHKAIVPSNKH 191 Query: 621 PALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG 680 + P+ ++ DG + + ++ + + V + Sbjct: 192 GSTTDATT---PIIGFSATFTRHDGVALGLVFEEIVFHKDFLDMIDEQWLCPVRFTLIRA 248 Query: 681 EV-INDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADM 739 + ++ D+ V+ + P N V + L Q TLVF V AH Sbjct: 249 DFDLSKVSTTSSDYVVSSLAHVVNRPDVNELVVRSWMD-LAGATRQSTLVFAVDVAHVHA 307 Query: 740 VVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTG 799 +V+E + + A +++T + ++++ F + P +++ +LT G Sbjct: 308 LVKEFQ---VRGIDARGIHASMRLT--------ERESLLASFQRADFP-VLINCAILTEG 355 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDI-YSTLESVDTMR 858 D+P I ++ +R +SR L+ QM GR R K+ I D V ++ L T+ Sbjct: 356 ADMPGIDCVLLMRPTKSRNLFAQMIGRGMR--KSAGKSDCLILDVVGNAHNDLVCTPTLL 413 Query: 859 PVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSE 918 + + + V + T Y T A ++ + + + L+ +A + D Sbjct: 414 GLEEQNIASDEATVVDGTRHR-YDTTRATVHAYTNKTFQASKSFLEPPEHVAFIDFDDVH 472 Query: 919 TIDKQV--------RRLDELCQDAAGVN------FNGFASRLREKGPHWSAEVFNKLPGF 964 + K + + L G + F+G ++R W A + + F Sbjct: 473 ELQKAMSMGAAKSVKELSPYAWVDCGADTYVLGSFDGAYVKVRRVDSEWHAHYYARNAAF 532 >UniRef50_Q1MTR1 Putative mitochondrial ATP-dependent helicase irc3 n=2 Tax=Schizosaccharomyces RepID=IRC3_SCHPO Length = 606 Score = 229 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 113/629 (17%), Positives = 208/629 (33%), Gaps = 111/629 (17%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQR-FKRILFLV 501 L LR YQE+ + A A +G++ I +++ATG+GKT + + ++ L LV Sbjct: 25 LKLRPYQEECLSACLNAFDEGKRRIAVSLATGSGKTALFPHFIKYAPTLRPNSEQCLILV 84 Query: 502 DRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE 561 R+ L QAL ++ N + ++ + VA+V SL L Sbjct: 85 HRKELALQALKHCRESLPNKSI------EIDMGNQCASGLADVTVASVFSLKNERLLKYN 138 Query: 562 PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-------VK 614 P+ + ++ DE H +Y RIL+HF A Sbjct: 139 PLN---FKLLIFDEVHH-------------------MASPSYLRILEHFGAESEKSKVNV 176 Query: 615 IALTATPALHTVQIF----GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKG 670 I LTAT + E VY + + D +L++ + + Sbjct: 177 IGLTATLFRADGKGLACGLDEIVYHRHFVDMIKDNWLVEPKV------------INIKWS 224 Query: 671 EQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVF 730 + + + L+ + E A F + + + TLVF Sbjct: 225 TDLVLADSSSFLDQEKLKKEAQSEKAIFE-----------IPRAWLEHA--SNRSSTLVF 271 Query: 731 CVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIV 790 C+ H+ V R ++ A+ T D+++ +T+I F K++ P ++ Sbjct: 272 CINVEHSLKVCNAFRKL------GIDARALFGETNDSER-----ETLIQDFRKKKFP-VL 319 Query: 791 VTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST 850 V +LT G DIP+I ++ R S L QM GR RL K I D D Sbjct: 320 VNCMVLTEGTDIPNIDCLMIARPTSSPNLLTQMIGRGLRLHE--GKRDCLILDFCDSLRR 377 Query: 851 LESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLA 910 + + V P + ++ E S A ++ + LQ ++ + Sbjct: 378 VS-------LHVDPT------LAGLSPDEVENFYNKSKNSLANPDYDPKIYGLQSVLWYS 424 Query: 911 TFNR-----DRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFI 965 + D + D+ + L A G+ R + Sbjct: 425 KLRKLIEMMDNIKNKDRSIFNLSTNAWVAVGM------GRYVLSFLQKVLIIDTNFEDGT 478 Query: 966 ARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPAL 1025 ++ + + + D + S+K + ++ ++ + Sbjct: 479 HKISEYTKEKLGTRVYNRKRIVSDRIPSLKFAI---RAAETYISN----LKTPRSLISRK 531 Query: 1026 QAVINRPRDLTR-KGLVELQEWFDRQHFE 1053 RP + + L + D + Sbjct: 532 AVWRMRPASVRQINFLKKSNLKLDEKLLT 560 >UniRef50_Q1WTK7 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=Lactobacillales RepID=Q1WTK7_LACS1 Length = 986 Score = 229 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 107/481 (22%), Positives = 174/481 (36%), Gaps = 81/481 (16%) Query: 376 FCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQ---NQ 432 F NG+ W + SK PEW E + ++P + Sbjct: 155 FTSHNNGKLTEDIASEIEEQW-------KGASKLSPEWIDEYEKKYKIQNKPAIKVVSQS 207 Query: 433 WFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQ 492 DN S + Q++A++ ++K + + + L+ ATGTGKT A + ++ Sbjct: 208 VDEDNSNYSIIKPNKMQKEALKNLQKLRLLRETKGLIISATGTGKTYLAALDV----KNY 263 Query: 493 RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL 552 KR LF+ R + +++L +F N L+ K ATVQ+L Sbjct: 264 NPKRFLFVAHREQILKKSLDSFHKVLGGDKKTN----YGILSGNAKNTDAKYLFATVQTL 319 Query: 553 VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA 612 K ++ +D I++DEAH Y ++LD+F Sbjct: 320 SKA--ENLNQFKRDEFDYILIDEAHHVGSKI-------------------YGKLLDYFTP 358 Query: 613 -VKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGE 671 + +TATP + +Y L D + P +I + A E L Sbjct: 359 DFLLGMTATPERSD----DKNIYE-----------LFDYNVPYEIRLQEALEEEMLVPFH 403 Query: 672 Q--VERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLV 729 V + GEVI+D + LV + V + Y LV Sbjct: 404 YIGVSDYTYNGEVIDDNTNL----------KYLVSEERVKYVVEQSKYYGYDGDVLHGLV 453 Query: 730 FCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNI 789 F AD + + L K YP ++G+ ++ R + I + L Sbjct: 454 FVSRKEEADEIAKLLT---KNGYPS------QMLSGEDSQEQR--EQAIEKLKNGEL-TY 501 Query: 790 VVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYS 849 +VTVD+ G+DIP I ++ +RK S I++ Q GR R K + D + Y Sbjct: 502 LVTVDIFNEGIDIPFINQVIMMRKTESVIVFVQQLGRGLR--KAQGKEYLTVIDFIGNYK 559 Query: 850 T 850 Sbjct: 560 N 560 >UniRef50_C7NAB7 Type III restriction protein res subunit n=3 Tax=Leptotrichia RepID=C7NAB7_LEPBD Length = 1090 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 98/582 (16%), Positives = 178/582 (30%), Gaps = 93/582 (15%) Query: 418 ELLEMLGSEPQKQNQW---FADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 + E QN + E Q+ + +++ G ++ L+ ATG Sbjct: 268 DEYEKYKKSINTQNTFDYRKTKIKQKDEFIPNSMQKRVLEKLKETRENGNKKGLVISATG 327 Query: 475 TGKTRTAIAMMFRLIQSQRFKR-----------------ILFLVDRRSLGEQALGAF-ED 516 TGKT A + + + + LF+ R L E A+ F Sbjct: 328 TGKTYLAAMDIKQFFEINSNNKNKLFEINEKKSKISNIKFLFIAHREELLENAMNVFSRI 387 Query: 517 TRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEA 576 +I+ + F I+ E + + A++QSL +D I+VDE Sbjct: 388 LKIDKNKFGRIY------GGLKEINKSMIFASIQSLRN----CYNEFKHNFFDYIIVDEF 437 Query: 577 HRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPAL-HTVQIFGEPVY 634 H +Y + L +F + LTATP I Y Sbjct: 438 HHS-------------------MSDSYLKTLSYFQSKFLLGLTATPKRMDGKDILSLCDY 478 Query: 635 RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFE 694 + + D P N Y ++ + + Sbjct: 479 NVVDEIGIKEALEEDLIVPFHYFGVNDYTINY-----------------DNIPYKNGKYN 521 Query: 695 VADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ 754 L++ + ++ + + FC HA + EE Sbjct: 522 EKILLENLLLNTRTDYIVEKINRFGFDGNELSAVAFCQNIEHASFMKEEFTK-------- 573 Query: 755 LEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKV 814 + IT + + R ++ +F +++ I+ VD+L G+DIP+I ++FLR Sbjct: 574 -KGYKSAVITANISSNDR--AEILDKFKNKKI-EILCVVDILNEGIDIPTINLLLFLRPT 629 Query: 815 RSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYS--------TLESVDTMRPVVVRPKV 866 S ++ Q GR R NK I D + + VD + + + Sbjct: 630 MSSTIFIQQIGRGLRKAE--NKDFVTIIDFIGNHKKDYLLINYFSNEVDNKDTLFTKKEK 687 Query: 867 ELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRR 926 + + N+ ++ E D + L D E I K Sbjct: 688 IINEIKNQFSNIPKSCYVELDRVCQNRIIEKIEKINFSSKNILKDLYLDYKEEIGKS--E 745 Query: 927 LDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARL 968 + L N F + G ++A++ + P + Sbjct: 746 NEILKVSDFDTNIELFQELSLKLGSFYNAQLQFENPEILKMN 787 >UniRef50_Q7UED5 Putative helicase n=2 Tax=Planctomycetaceae RepID=Q7UED5_RHOBA Length = 1071 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 108/558 (19%), Positives = 193/558 (34%), Gaps = 82/558 (14%) Query: 379 STNGREYRATMKTKSGIWYRD-VRDTRNMSKALPEWHRPE-ELLEMLGSEPQKQNQWFAD 436 + G E+ + + D V T E+ + E L L + + D Sbjct: 284 LSEGLEWTTKISQYELPYLWDKVTGTFETYWQDDEFQAFDIESLPRLRQAISTERKAGTD 343 Query: 437 NPGMSELGLRYY--QEDAVRAVE-KAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQ-SQ 492 LR + QE+ + + + V+ + L+ ATGTGKT A R+ + + Sbjct: 344 TGLAINFDLRPFPFQEEILDIIAAERNVQNKYRHLIVAATGTGKTMIAAFDYARVAREAG 403 Query: 493 RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL 552 R R+LF+ R+ + QA+ AF + F + L D + + ++QS Sbjct: 404 RKPRLLFIAHRKEILSQAMVAFRCV-LRDQNFGDL-----LVDGSQPEQHEHLFCSIQSY 457 Query: 553 VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA 612 R LQ + +++ +VVDE H +Y+ +L+H Sbjct: 458 NSRNLQME---SAEQFEYVVVDEFHHA-------------------AAPSYQSLLEHVQP 495 Query: 613 -VKIALTATPALHT----VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYL 667 + + LTATP + FG R + + D P Q + Sbjct: 496 QILLGLTATPERSDQLDVLSWFGG---RASAEIRLPDAISRRLLCPFQYFG--------I 544 Query: 668 SKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV-IPAFNRAVCNELTNYLDPTGSQK 726 S ++ ++ Q + + D +R + V ++ + + + Sbjct: 545 SDAVDLDGLTWQR----------GGYRIDDLDRLYTGNDVRAKLVFEKVAETVLDSQDVR 594 Query: 727 TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERL 786 L FC + AHA+ + I ++ + D R R ER Sbjct: 595 GLAFCCSVAHAEFMARFFDE---------NGIPSIALSASSTNDERNSAQQRLR---ERS 642 Query: 787 PNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD 846 N + VDL G+DIP + ++FLR S ++ Q GR RL PE K + D + Sbjct: 643 VNFIFVVDLYNEGIDIPEVDTVLFLRPTESLTVFLQQLGRGLRLHPE--KECLTVLDFIG 700 Query: 847 IYST-LESVDTMRPVVVRPKVELQTLVNEITDSE----TYKITEADGRSFAEHSHEQLVA 901 R + +P +L V ++ + E+ E + Sbjct: 701 AQRKEFRFASRFRALSDKPTAKLDNEVENGFPHLPSGCVIRLERVAQQRVLENVRESI-- 758 Query: 902 KLQRIIGLATFNRDRSET 919 +L R L++ + Sbjct: 759 RLVRPRMLSSLRDLKQYL 776 >UniRef50_Q047C2 DNA or RNA helicase of superfamily II n=26 Tax=Lactobacillus RepID=Q047C2_LACGA Length = 949 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 108/588 (18%), Positives = 211/588 (35%), Gaps = 88/588 (14%) Query: 442 ELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLV 501 ++ Q+ A+ + + + ++ L+ ATGTGKT + + + K+ L+LV Sbjct: 212 KILPNQMQKAALANLNALVKEQAKKALVVSATGTGKTYLGAFAV----KEYKPKKFLYLV 267 Query: 502 DRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE 561 R + ++AL +F + D LT + K TVQ++ + Q E Sbjct: 268 HREQIAKKALESFYRVIGGKKS-----DYGLLTGNKHDFDKKYLFGTVQTVSQE--QILE 320 Query: 562 PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTAT 620 + +D I++DEAHR Y++IL+HF + +TAT Sbjct: 321 QLDPEEFDYILIDEAHR-------------------VAAPTYQKILNHFAPKFLLGMTAT 361 Query: 621 PALHTVQ-IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ 679 P Q I+ Y Y + D P + VE + Sbjct: 362 PERMDKQNIYEIFDYHLAYEIRLKDALNDQMLTPFHYVG--------------VEDYTVG 407 Query: 680 GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADM 739 VI++T + + LV V +L Y K LVFC A Sbjct: 408 NHVISETSKL----------KDLVARKRVEYVLKQLDYYGYCGEKAKGLVFCSRQEEARE 457 Query: 740 VVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTG 799 + + ++D++K + +T + + TVDL G Sbjct: 458 LAKLFSQTGHPSR------------ALTNEDSQKQRIEVTHQLENGELEYIFTVDLFNEG 505 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRP 859 +DIPS+ IV LR +S I++ Q GR R P K + D + Y + + P Sbjct: 506 IDIPSLNQIVMLRNTQSSIVFIQQLGRGLRKFP--GKDYVTVIDFLGNYKN----NYLIP 559 Query: 860 VVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSET 919 + + + +S+ ++ + +F E + ++++ L++I L + R Sbjct: 560 IALNGDKSRDK-DQAVRESKLPQVIDVSTINFTEIASQRILVSLEKI-KLDSMRELRQSY 617 Query: 920 IDKQVRRLDELCQDAAGVNFNGFAS-----RLREKGPHWSAEVFNKLPGFIARLEKLKTD 974 D + +++ + +F + + + + K+ + Sbjct: 618 KDLK----EKIGRVPLLYDFYQYGTTAPTVFAKNHALAHYGDFLKKMGEEVNLGNYQNAA 673 Query: 975 INNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDF---LEAFDSLVQRSP 1019 ++ + +F E++ ++S + DF L++ + + Sbjct: 674 LSFVTKELLFGKRPHELLLLESCLDKNISRADFTKLLKSKNCYISEDV 721 >UniRef50_A5KTC5 Type I site-specific deoxyribonuclease n=2 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTC5_9BACT Length = 496 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 101/505 (20%), Positives = 191/505 (37%), Gaps = 53/505 (10%) Query: 702 LVIPAFNRAVCNELTNYLDPT-------GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ 754 +V R V + KTLVF T++HAD ++ R F + Sbjct: 1 MVSEDQIRTVLATMKEKFRTEIFPERGDEVPKTLVFAKTDSHADDIIRIAREVFNE---- 56 Query: 755 LEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKV 814 ++ I KIT +A+ + ++ F P IVVTVD++ TG D+ I +VF+R + Sbjct: 57 -GNEFIRKITYNAENPS----NFLSDFRTGYYPRIVVTVDMIATGTDVKPIECLVFMRNI 111 Query: 815 RSRILYEQMKGRATRLCPEVNKTSF-KIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVN 873 RSR +EQM GR TR + K ++ T V V K + L Sbjct: 112 RSRNYFEQMIGRGTRT---LGKDDLQRVTPAAKTNKTHFVVVDAVDVFDTTKSDSHPLER 168 Query: 874 EITDSETYKITEADGRSFAEHSHEQLVAKLQRIIG-LATFNRDRSETIDKQVRRLDELCQ 932 + + + + + +E + L +L R+ L++ +DR + + D + + Sbjct: 169 KKSTPFKDLMMQTVMGNHSEDNLSSLANRLTRLDKELSSTEQDRISQQNNGLPLKDAVKK 228 Query: 933 DAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDI----- 987 +N + + + + + A+ E +K + ++ + I Sbjct: 229 LFDALNPDKYLEKAKAMFGKANETEVTNDEVEAAKQELVKQAVQPFDNPGLRDTILKIRE 288 Query: 988 ----------DDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRP---RD 1034 D V S+ + + ++ F ++++ + ALQ N+P R Sbjct: 289 EHDQIIDTINLDTVTSLGFDPKSKERALNDIKKFKDFLEQNKDKIDALQVFYNQPYHRRT 348 Query: 1035 LTRKGLVELQEWFDRQHFE--ESSLRKAW------KETRNEDIAARLIGHIRRAA-VGDA 1085 LT + + +L E + + +A+ K N + +R + D Sbjct: 349 LTFEMVKDLVEKLKYPPYSLNTERIWRAYEITEESKVKGNAQALTDAVSLVRHGIGLDDM 408 Query: 1086 LKPFEERVDHALTRI-----KGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRR 1140 L PF V+ ++ EQL+WL+ + + + + +D D F F Sbjct: 409 LVPFAVVVEKRYQEWLVKLASEGKTFTPEQLAWLNMMKTHIAQSIAIDKDSFDHTPFAEH 468 Query: 1141 GGKAMLQRTFDDNLDTLLGKFSDYI 1165 GG + FD LD+++ + + Sbjct: 469 GGLYGAHKVFDGQLDSVIKSLNKEL 493 >UniRef50_D2RKS9 Type III restriction protein res subunit n=2 Tax=Acidaminococcus RepID=D2RKS9_ACIFE Length = 1061 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 95/521 (18%), Positives = 176/521 (33%), Gaps = 57/521 (10%) Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVE-KAIVKGQQEILLAMATGTG 476 +L E + + + ++ + YQ+ + A++ + +G+ L+ ATGTG Sbjct: 296 QLQEAIRQQRYQGTAKGSEVSYSFTIRPYPYQQVILDALDVERKERGRWHNLIVAATGTG 355 Query: 477 KTRTAIAMMFRLIQSQR-FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 KT + R S+ R+LF+ R+ + EQ+L F + F + + Sbjct: 356 KTAISAFDYRRFAASRPEGARLLFIAHRKEILEQSLSCFRQV-LKDPNFGELAVAGSRPE 414 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 + ++Q+ L + + YD I+VDE H Sbjct: 415 HLDQ-----VFMSIQTCNS--LSLWDHLEPDFYDMIIVDEFHHS---------------- 451 Query: 596 QLDYVSAYRRILDHFDA-VKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPI 654 +Y+ +L F + + LTATP + + ++ + D + P Sbjct: 452 ---AAQSYQNLLHWFQPKILLGLTATPERMDGK---DILHWFD------DHIAAEIRLPA 499 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 I R Y + V+ + + + V + +A+ Sbjct: 500 AIERRLLCPFHYFGVADTVDLSHVKWTNGHYDTGALTNLYVME---SHTANNRAQAILQA 556 Query: 715 LTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV 774 + Y + FCV+ HA + + + I + +A Sbjct: 557 VERYTADWQDIHGVGFCVSQDHAHFMADYFN-----------DNGIPSLALNAHSSEEDR 605 Query: 775 QTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV 834 Q+ + L + VDL GVDIP I I+FLR S ++ Q GR RL + Sbjct: 606 QSARQKLESGAL-TFLFVVDLFNEGVDIPCINTILFLRPTNSMTVFLQQLGRGLRL--DQ 662 Query: 835 NKTSFKIFDCV-DIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAE 893 K + D V + + +V R V + + E + + Sbjct: 663 GKDCLTVLDFVAQANRKYDFASRFQALVGRETVSVPRELKEGFPHVPKGCSIQLEEIAQK 722 Query: 894 HSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDA 934 + + ++L+ RD E D QV L + + A Sbjct: 723 RVLDNIRSRLRGDAFYQECIRDLYEATDHQVPTLTQFLKAA 763 >UniRef50_C7NIT3 DNA/RNA helicase, superfamily II n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NIT3_KYTSD Length = 1031 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 109/603 (18%), Positives = 195/603 (32%), Gaps = 81/603 (13%) Query: 326 ESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREY 385 + + + + + H V S + + + T Sbjct: 197 QVKVHYESRQTRLHAKAWMFHRDTSFHTAYVGSSNLSRSALIDGVEWNVRLSHHTTPHLL 256 Query: 386 RATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGL 445 T W + +T + S+ H + L E G + D G++ Sbjct: 257 EKFRATFETYWNDESFETFDPSRDADRLH--DALAEASGRS--RGASTVLDLSGLA-HRP 311 Query: 446 RYYQEDAVRAVE-KAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQS-QRFKRILFLVDR 503 +Q+ + A+E + + + LL ATGTGKT A RL ++ +R+LF+ R Sbjct: 312 YPFQQVMLDALEAERVEHDRHRNLLVAATGTGKTVVAAFDYKRLCEATNTPRRLLFVAHR 371 Query: 504 RSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM 563 + QA + + +G TF + ++ ATVQSL T + + Sbjct: 372 WEILVQARRTYREILGDG-TFGEMLGRGEEPRRWEH-----VFATVQSL---TAERLGQL 422 Query: 564 PVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA 622 P +D +V+DE H + YRR+L A + LTATP Sbjct: 423 PRDHFDVVVIDEFHHAQ-------------------AATYRRLLTALQPAELLGLTATPE 463 Query: 623 LHTV-----QIFGEPV-YRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERI 676 + FG + A+ +G L + V ++G Sbjct: 464 RADGVDVRQEFFGGRAAHELRLWDALSEGLLTPFHY-FGVHDNTDLSAVAFTRGRY---- 518 Query: 677 SPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAH 736 D + + D LV+ A V + + + FCV H Sbjct: 519 --------DAATLESLYTGNDARVLLVLKAVRDKVLD--------PRQMRAIGFCVGVQH 562 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLL 796 A + + A +TG+++ + R + + R N+V T DL Sbjct: 563 AQFMARKFTEA---------GIPARAVTGESNDEERSS---VRQDLHHRKINVVFTADLY 610 Query: 797 TTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD----IYSTLE 852 GVD+P + ++FLR S ++ Q GR R +K D V + + Sbjct: 611 NEGVDLPEVDTVLFLRPTESSTIFLQQLGRGLR--RHHDKAVLTALDFVGHQHANFRLEQ 668 Query: 853 SVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATF 912 M + + + S T + + + S + + +R + Sbjct: 669 RFTAMTGLSRQRLADATEHGFPFLPSGTQIVLDDVAQEELLRSIRESLHLTRRHLLRELG 728 Query: 913 NRD 915 + Sbjct: 729 AQG 731 >UniRef50_C4RRI3 Type III restriction enzyme subunit res n=2 Tax=Micromonospora RepID=C4RRI3_9ACTO Length = 1066 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 91/453 (20%), Positives = 157/453 (34%), Gaps = 76/453 (16%) Query: 403 TRNMSKALPEWHRPEELLEMLGS--EPQKQNQWFADNPGMSELGLRYYQEDAVRAVE-KA 459 + E ++P E L ++ A+ + ++ YQ + + ++ + Sbjct: 319 EDYWNDPAFEAYQPARDGERLRHALRGERSEDGIAEIANL-DVRPYPYQAEILADLDTER 377 Query: 460 IVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI 519 V G+ L+ MATGTGKT A RL ++ +LF+ + + Q+L F I Sbjct: 378 QVHGRHRNLVVMATGTGKTVVAALDYRRLHRAGTVDSLLFVAHQEQILRQSLSTFRQA-I 436 Query: 520 NGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRG 579 +F + L + A++QSL +R + YD ++VDE H Sbjct: 437 GDGSFGEL-----LVGGREPTGWRHVFASIQSLHRREID------PGAYDMVIVDEFHHA 485 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATPALHTV----QIF-GEPV 633 Y R+L V + LTATP + F G Sbjct: 486 -------------------EAPTYARLLGRLRPRVLLGLTATPDRADGGDVRRWFDGRTA 526 Query: 634 YRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDF 693 A+ L P Q + + + + D E + Sbjct: 527 VELHLWEALERQLL----APFQYFGVHDD--------VDLSHLRWKRGQGYDPGELGGVY 574 Query: 694 EVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYP 753 D +V+ + V + L FCV+ HA+ + + Sbjct: 575 TGNDARARIVLSSVRDKV---------DVHRMRALGFCVSIGHAEFMADWFTR------- 618 Query: 754 QLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 +T AD+ A+ ++ F +L ++ TVDL GVD+P + I+ LR Sbjct: 619 --HGVPSAAVTSRADRSAQHG--LLRDFRAGKL-RVLFTVDLFNEGVDLPMVDTILMLRP 673 Query: 814 VRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD 846 S ++ Q GR RL + +K + D + Sbjct: 674 TESATIFLQQLGRGLRL--DDDKPCLTVLDFIG 704 >UniRef50_A1SJ00 Type III restriction enzyme, res subunit n=3 Tax=Actinomycetales RepID=A1SJ00_NOCSJ Length = 558 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 95/461 (20%), Positives = 165/461 (35%), Gaps = 68/461 (14%) Query: 440 MSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILF 499 S+ LR YQ +A +++ + LL +ATG GKT ++ R ++S RIL Sbjct: 134 PSKYELRPYQLEAAERIQQDLEDT-NRALLVLATGLGKTVVGGEVIRRHLESHPDARILV 192 Query: 500 LVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS 559 + + L EQ A ++ + D P + VAT+ S++ Sbjct: 193 VAHMKELVEQLEKAL-WRHLDKSVPTQVLT----GDTRPTSFEGVTVATIDSVLGLVRTD 247 Query: 560 DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTA 619 P I++DE H + DA + +TA Sbjct: 248 WRPS------LIMIDETHHVGETGMFAQLLDECQ-----------------DARQFGVTA 284 Query: 620 TPALHT----VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVER 675 TP FG+P Y + DG+L D + + + V Sbjct: 285 TPWRGDKFDITSRFGQPSYSLGIAEGMADGYLAQVDYRMYVDNLDWD---------FVRH 335 Query: 676 ISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNA 735 S G + + + N+ L +P + + +E + +VFC T Sbjct: 336 ASEHG------------YSIKELNKALFLPQRDEEIVDEFRQAWREIRDPRAIVFCQTIE 383 Query: 736 HADMVVEELRAAFKK-KYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 HA+ + L A + + H + + ++ Q ++ F R+P I+ VD Sbjct: 384 HAERMATLLAGADQSWRRASYLHSGLSR---------QQRQILLNAFRLGRVP-IITCVD 433 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV-DIYSTLES 853 + GVD+P + I FLR SR ++ Q GR RL K S K+ D V D+ Sbjct: 434 VFNEGVDVPDVNLIAFLRVTHSRRIFVQQLGRGLRLRE--GKESLKVLDFVTDVRRVAAG 491 Query: 854 VDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEH 894 +D R + +++ L + + + ++ Sbjct: 492 LDLKRTLAAIRGGDIEELSLPLPGGSQITFNDETAGTLLDY 532 >UniRef50_C6I028 Putative helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I028_9BACT Length = 1039 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 108/536 (20%), Positives = 174/536 (32%), Gaps = 88/536 (16%) Query: 331 SKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKI-----PFCYSTNGREY 385 ++C + S D+ + + +G + + G E+ Sbjct: 181 ARCLEALSEIPGARIRVSLDDTETRLHAKAYLFPRETGYSTAYVGSSNASRTALSTGHEW 240 Query: 386 RATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELG- 444 + D + + EL+E Q + S L Sbjct: 241 NLKIAASLSPDLWDKM-----VASFESFWNRPELVEYGEGTRLLVRQRLEEGRAASTLSF 295 Query: 445 ------LRYYQEDAVRAV-EKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRI 497 +QE+ + + + V G+ + L+ ATGTGKT A RL + R+ Sbjct: 296 KGLALSPYPFQEEILEKLAVEREVHGRTKNLVVAATGTGKTVIAALDFRRLREKMPRARL 355 Query: 498 LFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 LF+ RR + EQ+L F + F I L D P S + V +VQ L R+L Sbjct: 356 LFVAHRREILEQSLLTFR-RALGDPNFGRIL----LPDGPPGGSEHLFV-SVQLLASRSL 409 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIA 616 + + + + + YRR+L + + Sbjct: 410 --LDSLSPDYF-------------------DVVVVDEVHHGEAPTYRRLLSRLSPRILLG 448 Query: 617 LTATPALHTV----QIF-GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGE 671 LTATP F G A+ G L+ P + Sbjct: 449 LTATPERSDGLDIRSWFDGRIAAEIRLPEAIGRGLLV----PFHYFG----------VSD 494 Query: 672 QVERISPQGEVINDTLED-DQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVF 730 V+ S + E L D D D G+ + ++NYL + L F Sbjct: 495 SVDYRSVRWERGRYNLSDLDNVITGDDLRAGI--------ILKAVSNYLSDPRKARGLGF 546 Query: 731 CVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIV 790 CV+ HA + E A + D R + + +R + L + + Sbjct: 547 CVSVNHAIRMAEIFNRA---------GLPSEALHAGTPSDRR--ERVRSRLSNGEL-SFL 594 Query: 791 VTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD 846 TVDL GVDIP + ++FLR S ++ Q GR RL P K + D + Sbjct: 595 FTVDLFNEGVDIPEVDTVLFLRPTESLTVFLQQLGRGLRLFP--GKEVLTVLDFIG 648 >UniRef50_C6CS24 Type III restriction protein res subunit n=5 Tax=Bacilli RepID=C6CS24_PAESJ Length = 1053 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 115/612 (18%), Positives = 203/612 (33%), Gaps = 88/612 (14%) Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVE-KAIVKGQQEILLAMATGT 475 E+L + LG K +Q + YQ++ + +E + + G+ + LL ATG Sbjct: 299 EQLKQALGKNYSK-DQAQDAMFFKFSIQPYDYQKEILEKLEAERTLYGRHKNLLVAATGV 357 Query: 476 GKTRTAIAMMFRLIQSQRFK-RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLT 534 GKT + R Q + R+LF+ R + +Q+L F + F + Sbjct: 358 GKTVISAFDYRRFAQRNPQRARLLFVAHREEILKQSLDTFR-FILKDLNFGELH-----V 411 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 S + ++QSL L E YD I+VDE H Sbjct: 412 GGNQAKSLEHLFISIQSLNSMKLT--EITTPDYYDFIIVDEFHHA--------------- 454 Query: 595 SQLDYVSAYRRILDHFDA-VKIALTATPAL----HTVQIFGEPVY-RYTYRTAVIDGFLI 648 +Y+++L H++ + + LTATP ++ F + + A+ L Sbjct: 455 ----AAPSYQKLLAHYEPQILLGLTATPERMDGKDVLRYFDDTIAAEIRLTDAIDRKLLC 510 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 P Q + V LS+ + R Q E+ N Sbjct: 511 ----PFQYFG--VSDHVDLSQVKWTRRGYDQSELENLFT---------------NNKIRA 549 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDAD 768 + N L Y+ K L FCV HA + + A I I+ Sbjct: 550 TQILNSLRKYVTDLDEVKGLGFCVGVEHALYMAKVFNEA-----------GIPSISLHGG 598 Query: 769 KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 + R + + +V VDL GVDIP + ++FLR S ++ Q GR Sbjct: 599 SSDEDRDQVKGRLARGEI-KMVFVVDLYNEGVDIPEVNTVLFLRPTESLTVFLQQLGRGL 657 Query: 829 RLCPEVNKTSFKIFDCVD-IYSTLESVDTMRPVVVRPKVELQTLVNEIT---DSETYKIT 884 RL K + D + + D +R ++ + K +Q V ++ Sbjct: 658 RLAE--GKECLTVLDFIGQAHKDYNFHDKLRALLGKTKHSVQHYVEHGFSSLPRGSFIQL 715 Query: 885 EADGRSFAEHSHEQLVAKLQRIIGL----ATFNRDRSETIDKQVRRLDELCQDAAGVNFN 940 E R + + +Q + +I + + + + + G N Sbjct: 716 EKVARDYILRNLKQATNNRRSLIHKMKYFEGDSGQKLTITNFLRYHGLSIQELYGGRTGN 775 Query: 941 GFA------SRLREKGPHWSAEVFNKLPGFIARLEK---LKTDINNLNDAPIFLDIDDEV 991 + L E + + K + L L+ I L+ ++++ Sbjct: 776 RTFRGLMVEAELLESFQFENGDYLTKRIPALLCLNSRRLLRFLIGYLSGEKQVSTEEEQL 835 Query: 992 VSVKSLYGDYDT 1003 + Y Y + Sbjct: 836 MLNLFYYTFYRS 847 >UniRef50_D1N7I0 Helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7I0_9BACT Length = 550 Score = 224 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 102/436 (23%), Positives = 164/436 (37%), Gaps = 73/436 (16%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 + LR YQ+ AV AV K + + + + T GKT ++ IQ Q R++ L Sbjct: 1 MQLRQYQQQAVDAVYKYLRRYDDNPCVVIPTAGGKTPILATIVKDAIQ-QWDGRVMILSH 59 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 + L EQA+ D I K + K VA +QS + T Sbjct: 60 VKELLEQAVDKIHTVYPECD-----IGIYSTGLKRWDTDNKCIVAGIQSAYRNTD----- 109 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-IALTATP 621 +D I+VDEAH +G+ +R+ L RR+ DH ++ I LTATP Sbjct: 110 -GFGNFDLIIVDEAH------LIPEKGDGMYRNFL------RRMKDHNPELRVIGLTATP 156 Query: 622 ALHTV-------QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 T I + + + + GFL G+++ GE +E Sbjct: 157 YRLTSGPICAPDNILNKICFEVGVKELLQQGFLCPLRSKAS-RQEIDASGLHVRAGEFIE 215 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 ++ ++ + C+E+ +Y + ++FC + Sbjct: 216 ---------------------SEVDKLMNTGDLVAQACSEIISYARE--RKAVIIFCCSI 252 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 HA V+ +R + GD R ++ RF ++ +V V Sbjct: 253 DHAQNVLAHIRK---------HDSTAEAVFGDTLPSFR--AEILERFKAGKI-KFLVNVG 300 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV 854 +LTTG D P+I +V LR S LY QM GR RL P +K + D +E Sbjct: 301 VLTTGFDAPNIDCVVLLRPTASPGLYYQMVGRGFRLHP--DKKDCLVLDFGGN---IERH 355 Query: 855 DTMRPVVVRPKVELQT 870 + + V PK + + Sbjct: 356 GPVDSIQVEPKADREE 371 >UniRef50_B1VE55 Putative helicase n=2 Tax=Corynebacterium RepID=B1VE55_CORU7 Length = 969 Score = 224 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 104/564 (18%), Positives = 185/564 (32%), Gaps = 74/564 (13%) Query: 438 PGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRI 497 P + + Q +A+ + + +G+Q L+ ATGTGKT + +S K+ Sbjct: 209 PAGNVIEPNAMQVEALENINRLRSQGEQRALVISATGTGKTILGALAV----RSANPKKF 264 Query: 498 LFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 LFLV + ++A+ F+ G + E + AT+ SL + Sbjct: 265 LFLVHTEQILDRAMLDFQKVLGAGPE-----EFGKFAGSSRELGKRYTFATIASLSRP-- 317 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIA 616 ++ + +D I+VDE HR + Y RI++H + Sbjct: 318 ENLYKLSQDYFDFIIVDEVHRA-------------------EAATYVRIIEHLKPDFLLG 358 Query: 617 LTATPALHTVQ-IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVER 675 LTATP + IF + Y + P + Sbjct: 359 LTATPERTDGKSIFERFHHNVAYEIRLQKALEEKMLVPFNYYGVT-------------DY 405 Query: 676 ISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNA 735 +G V++D L P + + N L Y G K L+FC Sbjct: 406 TDNEGNVVDDEFSSLA---------RLCAPERVKHIVNMLNTY-GFAGDVKGLIFCSRVE 455 Query: 736 HADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 A+ + L + Q + R L + ++TVD+ Sbjct: 456 EAEELSRLLNKE-----KVYGRTLRTLALSSQYFTVAERQKAVERLENGEL-DYLLTVDI 509 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD 855 G+DI S+ IV LR S I++ Q GR R C K ++ D + Y + Sbjct: 510 FNEGIDIRSVNQIVMLRPTESSIIFTQQIGRGLRKCE--GKDHLRVIDFIGNYKK----N 563 Query: 856 TMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRD 915 + P+ + + + D K+T+A + ++ R + + Sbjct: 564 FLIPIALFGE------RSRRKDKIRRKMTDAATQGAIAGLSSVNFDQISRERIFESLAQT 617 Query: 916 RSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDI 975 R + ++ + +L +R AE F+A+ L+ Sbjct: 618 RLDRVEDLKLEVSKLSDQLGRPPTREDVARYDTVDVTVLAEKEKDYWTFLAKYRYLEA-A 676 Query: 976 NNLNDAPIFLDIDDEVVSVKSLYG 999 + P +D E++ K Sbjct: 677 PSEELLPYLQFLDREILPSKRSAE 700 >UniRef50_Q14JJ7 DNA/RNA helicase n=18 Tax=Francisella RepID=Q14JJ7_FRAT1 Length = 913 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 98/518 (18%), Positives = 177/518 (34%), Gaps = 97/518 (18%) Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 +E +++ + N ++ Q +A+ ++ + G+ + L+ ATGTG Sbjct: 163 DEYIQIYQRASKLANTSIQRIS--HKIQPNKIQCEALESLRQLRDSGKNKALIISATGTG 220 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK 536 KT + + + + KR LF+V R ++ +A F + GL Sbjct: 221 KTFLSAFDIASI----KPKRCLFVVHRTNIAIKAQETFAKVISD--------KTLGLYTG 268 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 + S + ATVQ+L + ++ ++ I++DE H Sbjct: 269 GNKTSAEYLFATVQTLKNSKVLAN--FKSQEFEYIIIDEVHHA----------------- 309 Query: 597 LDYVSAYRRILDHFDA-VKIALTATPALHTV-QIFGEPVYRYTYRTAVIDGFLIDQDPPI 654 +Y+++L HF + +TATP IF Y Y + D P Sbjct: 310 --EAESYKKVLAHFTPKFLLGMTATPERSDAADIFKLFDYNIAYEIRLHQALEQDLLCPF 367 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 + D + ++ +F + LV + + Sbjct: 368 HYF------------------------AVEDLYLESEEILAKNFAK-LVSDVRVEHIIEK 402 Query: 715 LTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV 774 + Y S+ L+F A + + + IK + +D+ ++ Sbjct: 403 INFYGYSGQSRAALMFVSNVDEAKELATKF------------SNKGIKAKALSSQDSEQI 450 Query: 775 QTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV 834 + + I+VTVD+ GVDIP I I+ LR +S I+Y Q GR R Sbjct: 451 RQTTIAQLESGELEIIVTVDIFNEGVDIPCINQIILLRPTQSAIVYIQQLGRGLRKY--Q 508 Query: 835 NKTSFKIFDCVDIYS------------TLESVDTMRPVVVRP--------KVELQTLVNE 874 +K I D + Y+ D ++ VV P + + E Sbjct: 509 DKKFVVILDFIANYTNNFLIAVALSGDNSYDKDELKKFVVSPNNYLAGKSTITFSNIAKE 568 Query: 875 ITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATF 912 I K + ++ + QL +L RI L F Sbjct: 569 IIYKNIQKTNFSQLKNIKRD-YTQLKKELGRIPNLVDF 605 >UniRef50_A4WYD6 Transposase, IS4 family n=3 Tax=Rhodobacteraceae RepID=A4WYD6_RHOS5 Length = 956 Score = 222 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 102/601 (16%), Positives = 188/601 (31%), Gaps = 82/601 (13%) Query: 379 STNGREYRATMKTKSGIW---YRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFA 435 T G E+ + + + + + P+W + + Sbjct: 189 LTTGIEWNLHFEGAADVVAPAFEALLAHPQTRPLTPDWITAYAARRRATPLTDLAQRIVS 248 Query: 436 DNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK 495 D P Q A+ A+ G + L+ +ATG GKT A S+ F Sbjct: 249 DEPQAPPPQPHSIQRAALAALAATRRAGHRAGLVVLATGLGKTWLAA------FDSRPFA 302 Query: 496 RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKR 555 ++LF+ R + QA+ +F R +D +I A++Q+L + Sbjct: 303 QVLFVAHREEILTQAMSSFRRIRPEA-------RFGRYDGTEKDDGAEILFASIQTLGRS 355 Query: 556 TLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VK 614 +D IVVDE H +YR +LDHF Sbjct: 356 NH--LRRFAPDSFDYIVVDEFHHAS-------------------AGSYRGLLDHFTPRFL 394 Query: 615 IALTATPALHTV-QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQV 673 + LTATP + Y + +G P + YL ++V Sbjct: 395 LGLTATPDRSDGADLLALCGDNLVYHCDLFEGIEAGLLSPFR----------YLGVPDEV 444 Query: 674 ERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVT 733 + F+ L A R ++ + D + FC + Sbjct: 445 DYAQIPWR--------SNQFDPEALEAALATEARARNALDQFHRHRD----GPAIGFCCS 492 Query: 734 NAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTV 793 HA+ + +A + + + + T + R + + +I+ V Sbjct: 493 LRHAEFMAAFFQA-----------QGLRAVAVHSGPGSAPRATSLDRLGRGEI-DILFAV 540 Query: 794 DLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLES 853 D+ GVD+P+I ++ LR S IL+ Q GR R ++ D + + + Sbjct: 541 DMFNEGVDVPNIGTVMMLRPTESVILWLQQLGRGLRRVEGK---LLRVIDYIGNHRVFLT 597 Query: 854 VDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFN 913 L + + + T + A ++ E L L+ G+ Sbjct: 598 KLRALLAAGPGDRSLAQRLEQAA-AGTLALPPACSVTYDLRVIEILRDLLRPKSGMEDLE 656 Query: 914 RDRSETIDKQVRRLDELCQDAAGVNFN-----GFASRLREKGPHWSAEVFNKLPGFIARL 968 + + +R G + G+ +R+ G A + G + ++ Sbjct: 657 AQYRDFRLRHGQRPTAAEIARMGFDPARNGHGGWFDFVRDMGDPVDARAQTTVAGLLRQI 716 Query: 969 E 969 E Sbjct: 717 E 717 >UniRef50_B3ECY7 Type III restriction protein res subunit n=1 Tax=Chlorobium limicola DSM 245 RepID=B3ECY7_CHLL2 Length = 967 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 92/494 (18%), Positives = 180/494 (36%), Gaps = 82/494 (16%) Query: 370 QRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP--EELL------E 421 Q + + +G Y A + + + + +R +++L + Sbjct: 59 QSRFRKYAFEIDGYTYHAEGVISRDQFSDQLFRQNELQFQDYKIYRFSYDDILHNPDRCQ 118 Query: 422 MLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTA 481 + ++ EL Q A+ A+E+A G + L+ +ATG GKT A Sbjct: 119 RQLRRAIRADEELNPLLQSVELNPNVPQRMALAALEEARNAGNAKGLVVLATGIGKTYLA 178 Query: 482 IAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDS 541 R +LFLV + +Q+ F + + T + + Sbjct: 179 AFDAKRFCAPTGGN-VLFLVHNTEILKQSAEKFANVWPDA-TSGLYYGTE------KTYE 230 Query: 542 TKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVS 601 ++ A++Q++ K Q+ +D I++DE+HR + Sbjct: 231 VQVLFASMQTMAKDNHQAL--FDSTHFDYIIIDESHR-------------------TPTA 269 Query: 602 AYRRILDHFDA-VKIALTATPALHTVQ-----IFGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 +Y++IL +F + +TATP Q V+ R A+ GFL+ Sbjct: 270 SYKKILTYFKPKFLLGITATPDRLDEQEVLPFYDNNLVFEMGQREAIDSGFLVPFK---- 325 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNEL 715 Y + ++ + + + + V D ++ L+I + + + Sbjct: 326 ----------YYGLKDDIDYTNIRY--------NGYRYNVQDLDKLLMIDKRDNGIIEKF 367 Query: 716 TNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQ 775 + ++ + FCV+ HA+ ++ R A + I I K+ R + Sbjct: 368 N---ELATVKRGIGFCVSIKHAERCAKKFRDA---------GFSAIAIHSKMGKEER--E 413 Query: 776 TMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN 835 + RF K + ++ D+ GVD P + ++FLR S+ ++ Q GR RL P Sbjct: 414 DAVARFRKGDI-DLAFVRDVFNEGVDFPDVETLLFLRPTESKTIFIQQLGRGLRLSPR-- 470 Query: 836 KTSFKIFDCVDIYS 849 K + + D + Y Sbjct: 471 KEALAVLDFIGNYK 484 >UniRef50_A4SC93 Type III restriction enzyme, res subunit n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SC93_PROVI Length = 556 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 98/413 (23%), Positives = 165/413 (39%), Gaps = 65/413 (15%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ AV AVE A GQ++ L MATG GK+ A ++ + + +L L Sbjct: 139 LRNYQVSAVEAVEGARAHGQRKALAIMATGLGKSMVANQVIANELDRNPCQEVLVLAHMS 198 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L Q L A ++ T ++ + P S + AT QSL ++ D Sbjct: 199 DLVRQ-LEASSWQQLGKGTSTHLWT----DGEQPAYSGGVVFATWQSLFS-AMRKDAGSL 252 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKI-ALTATPAL 623 R+ +VVDEAH + + +L+H + LTATP Sbjct: 253 RERFGLVVVDEAHHAPSVG-------------------FTELLEHLSPNFLAGLTATPWR 293 Query: 624 HTVQ----IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ 679 + +FGEPV+ + GFL + R +G+ E+V R S Q Sbjct: 294 GDERSLQGLFGEPVFTLDIVAGMQMGFLAA------VDYRMLTDGINW---EEVSRASSQ 344 Query: 680 GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADM 739 G VAD N LV+P + + + + + + + L FC + HA Sbjct: 345 G------------LTVADLNSHLVVPERDIGMVEVICDKMAGIKNPRALAFCRSIEHA-- 390 Query: 740 VVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTG 799 E L+ F + + + ++ R ++ F + ++++++++L G Sbjct: 391 --ERLQPLFASRGVK-----TALLHSQLPREQRFKN--LSGFRMGHI-DLLISIEMLNEG 440 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLE 852 +DIP + + F+R SR ++ Q GR R+ K + + D V + Sbjct: 441 IDIPEVNLVAFMRVTHSRRIFLQQLGRGLRIS--KGKENVLVLDFVADIRRIA 491 >UniRef50_A9G978 Putative uncharacterized protein n=2 Tax=Myxococcales RepID=A9G978_SORC5 Length = 557 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 107/501 (21%), Positives = 179/501 (35%), Gaps = 78/501 (15%) Query: 444 GLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDR 503 LR YQ AV AV A +G + +++ + TG GKT + RL + +++L L R Sbjct: 17 ALRPYQRAAVDAVLAARRRGVRRMVVCLPTGAGKTVIFSHLA-RLAR----RQVLVLAHR 71 Query: 504 RSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM 563 L QA E T ++ + P D ++ V +++SL ++ L+ Sbjct: 72 EELLFQAKDKIERALAGQATVA----VEQGELRAPAD-ARVIVCSIRSLHEKRLEQ---- 122 Query: 564 PVARYD--CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP 621 D ++ DE H D R + A+ L + TAT Sbjct: 123 VTGGRDIGLVIYDECHHAPADDN-----RRVLRQLGAFDPAWTGTL-------LGFTATT 170 Query: 622 ALHTV----QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 A +F VY + + DG+L G ++ + ++ Sbjct: 171 ARGDGKGLDDVFEAIVYSRSLPEMIADGYLAP------------LTGYRVATATDLSPLA 218 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHA 737 G DF + + + N V + + ++T+ FCVT AHA Sbjct: 219 AGG----------LDFATDELEEAVDMEERNALVARSI---QELARDRRTIAFCVTVAHA 265 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 + + L + + GD D R ++ F +ER+ ++ V +LT Sbjct: 266 RNLSKALNHLGVRS---------AYVHGDMPSDLRGR--ILADFREERV-QVLTNVAVLT 313 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTM 857 G D P + I R RS LY Q GR TRL P K I D VD+ S + T+ Sbjct: 314 EGFDDPGVSCIAMARPTRSDGLYAQCVGRGTRLHP--GKKDCLILDFVDLSSL--QLCTL 369 Query: 858 RPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQ-RIIGLATFNRDR 916 + P+ + S ++ D F + + ++Q R Sbjct: 370 PSLFGMPRDLDLEGRDASEASRFFRQVTFDYPGFEVEAGRITLREIQERAAHFDPL---- 425 Query: 917 SETIDKQVRRLDELCQDAAGV 937 S +D +V + + G Sbjct: 426 SLRVDPEVMAISRNAWASLGR 446 >UniRef50_Q8R5Z3 DNA/RNA helicase (DEAD/DEAH BOX family) n=15 Tax=Fusobacterium RepID=Q8R5Z3_FUSNN Length = 942 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 99/575 (17%), Positives = 190/575 (33%), Gaps = 94/575 (16%) Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 E + + +K + N + E+ Q A++ +E+ + LL ATGTGK Sbjct: 183 ENYQKRYEQLKKLIEVNNQNLDLDEIKPNSMQVQALKNLEETRKEN-DRALLISATGTGK 241 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 T + + + + K+ILF+ R+ + E++ +++ N + IFD + Sbjct: 242 TYLSAFDV----KQAKAKKILFVAHRKVILERSKISYQRILKNKNM--EIFD----NNFQ 291 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 D ++ A VQ+L K ++ P +D I++DE H G Sbjct: 292 INDKDEVVFAMVQTLNKE--KNLNIFPKDYFDYIIIDEVHHGG----------------- 332 Query: 598 DYVSAYRRILDHFDA-VKIALTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 Y+ I ++F + +TATP I+ Y Y + D + P Sbjct: 333 --AKTYQSIFEYFKPKFLLGITATPERTDDFNIYQLFNYNVAYEIRLQDAMKEELLCPFH 390 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNEL 715 I+D + D + + + L + + Sbjct: 391 YFG------------------------ISDIVIDGESIDEKTSLKKLTSDTRVKHILENS 426 Query: 716 TNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQ 775 Y L+F A ++VE+ + I ++ + + Sbjct: 427 KYYSYSGERLSCLIFVSKVEEAKILVEKFLE-----------QGVKAIALSSENSDNERE 475 Query: 776 TMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN 835 I + + + + +VD+ GVDIP + ++ LR S I+Y Q GR R N Sbjct: 476 EAIRKLEQGEI-EYITSVDIFNEGVDIPCVNQVILLRPTTSAIVYIQQLGRGLR--KHKN 532 Query: 836 KTSFKIFDCVDIYS------------TLESVDTMRP--------VVVRPKVELQTLVNEI 875 K + D + Y D M+ + + + E Sbjct: 533 KDYTVVLDFIGNYEKNFLIPIAISQNNSYDKDFMKRFLMNATDFLAGESSISFDEISKER 592 Query: 876 TDSETYKITEADGRSFAEHS--HEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQD 933 K ++ + E E+ + ++ + N I K + DE+ ++ Sbjct: 593 IFENINKTNFSNRKLIEEDFKLLEKQLGRIPYLYDFYEKNMLSPTVILKYKKDYDEVLKN 652 Query: 934 AAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARL 968 A G + + +K + + F L Sbjct: 653 IAPKYRAGNLNNIEKKFLIFLSTFFTPAKRIHEML 687 >UniRef50_Q2NIB5 Predicted helicase n=2 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NIB5_METST Length = 937 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 91/431 (21%), Positives = 166/431 (38%), Gaps = 80/431 (18%) Query: 423 LGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAI 482 L +E +K P L Q+ ++ + K++ K ++ LL ATGTGKT + Sbjct: 172 LYNENKKIQIDSWIKPRHKTLTPNNMQKSFIKNLRKSLAKNDKKGLLISATGTGKTFASA 231 Query: 483 AMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDST 542 + + K+ILFLV R + +QA+ ++ G F+ + L+ + S Sbjct: 232 FALKEI----NPKKILFLVHREQIAKQAMKSY------GKIFHE-KTLGILSGNKKDYSV 280 Query: 543 KIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSA 602 +TVQ + K+ ++ E +D IV+DE HR + + Sbjct: 281 DFLFSTVQMMSKK--ENYERYNRDYFDFIVIDEVHRAGSV-------------------S 319 Query: 603 YRRILDHFDAV-KIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNA 661 Y++I+++F+ + + +TATP Y+ L + + +I +NA Sbjct: 320 YQKIMNYFNPIFYLGMTATPDRSDE------FDIYS---------LFNHNIIYEIRLKNA 364 Query: 662 QEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDP 721 E L D +V D ++ + + Y Sbjct: 365 LEEDMLCSFNYFGIT-------------DNAIDVNDMSK-----TRIDNIIENIEYYGYS 406 Query: 722 TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARK--VQTMIT 779 K L+FC +A ++ +E + ++G+ + RK + ++ Sbjct: 407 GSRVKGLIFCNNIHNAKILSKEFNN---------RGYRTLSLSGNNTQKERKDTIDRLVN 457 Query: 780 RFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSF 839 + L + ++TVD+ GVDI + IV LR+ S I++ Q GR R NK Sbjct: 458 DDRCDNL-DYIITVDIFNEGVDIKEVNQIVMLRETESSIIFIQQLGRGLRKY--SNKEFV 514 Query: 840 KIFDCVDIYST 850 + D + Y Sbjct: 515 VVLDFIGNYKN 525 >UniRef50_Q82Z57 Helicase, putative n=6 Tax=Lactobacillales RepID=Q82Z57_ENTFA Length = 964 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 115/623 (18%), Positives = 214/623 (34%), Gaps = 94/623 (15%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 + Q++A+R+++ G + ++ ATGTGKT A + Q KR+LF+V Sbjct: 220 ILPNSMQKEALRSLKALRETGATKGMIVSATGTGKTYLAAFDV----QQFHPKRVLFIVH 275 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 + +AL +F+ D D L+ K T+Q++ K Q E Sbjct: 276 SELILMKALESFKLILGGKDD-----DYGVLSGNSKNFDAKYLFGTIQTVSKSEYQ--ER 328 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIALTATP 621 + +D I++DE H+ +Y + ++ F+ + +TATP Sbjct: 329 LGKEAFDYILIDEVHKAG-------------------AKSYIKAIEFFNPKFLLGMTATP 369 Query: 622 AL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG 680 IF Y Y + + P V G Sbjct: 370 ERTDNFNIFELFDYNVAYEIRLQAALEAELLCPFYYFG--------------VTDYEKDG 415 Query: 681 EVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMV 740 E+I++T + + L+ + ++ Y S + LVFC A + Sbjct: 416 EIIDETTDL----------KRLLQKERVDFLIKKINYYGYSGDSPRGLVFCSRKDEARQL 465 Query: 741 VEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGV 800 E ++GD + D R+ + I R + + + + TVD+ G+ Sbjct: 466 AEMFND---------RGIPSAYLSGDHNFDKREKE--IKRLDTGEI-HYIFTVDIFNEGI 513 Query: 801 DIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPV 860 DIP + ++ LR +S I++ Q GR R P K + D + Y + M P+ Sbjct: 514 DIPKVNQVIMLRNTQSSIIFIQQLGRGLRKDPS--KEFVTVIDFIGNYKN----NYMIPM 567 Query: 861 VVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETI 920 + +T +T G S K+ R + ++ + + + Sbjct: 568 ALSGDSSQTK---NSLRRDTIDVTYISGLSSINFE------KVARERIFKSIDQAKLDAM 618 Query: 921 DKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLND 980 + +L V + L P F+ R+ + + ++ + Sbjct: 619 SELKASYFKLKNRLNRVPYLNDFQVLDGVDPLLIIGKEKTYYNFLERIGETEAKLSEEEN 678 Query: 981 APIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRS--PNAQPALQAVINRPRDLTRK 1038 + + E++S + Y +E F + AL N T Sbjct: 679 GALKF-VSVELLSGIRPHELY-----VIEEFLMTDKEQLSLEEITALFDTFNL--TYTTD 730 Query: 1039 GLVELQEWFDRQHFEESSLRKAW 1061 L + + D F ES++RK + Sbjct: 731 TLASVVKVLDLS-FYESTIRKRY 752 >UniRef50_D1PBM5 Putative prophage LambdaSa03, helicase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PBM5_9BACT Length = 553 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 89/443 (20%), Positives = 164/443 (37%), Gaps = 74/443 (16%) Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 E+ EP ++ + + GLR YQ + V + ++L M TGTGKT Sbjct: 12 EVEKVEPFERPAIRFSHIESDDTGLRPYQAEMKHNVYGLWDR-IDNVMLQMPTGTGKTIV 70 Query: 481 AIAMMFRLIQ----SQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK 536 +++ +++ R +IL + RR L QA +I ++ + Sbjct: 71 FTSVVKDILRWCNLHSRESKILIVAHRRELIRQASRK----------LGNIPHGVIVSGE 120 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 + I VA++Q+ + R E M ++D I++DEAH Sbjct: 121 KLDLDKSIQVASIQTFMSRRHY--EIMRRVQFDFIIIDEAHH------------------ 160 Query: 597 LDYVSAYRRILDHF-DAVKIALTATPAL----HTVQIFGEPVYRYTYRTAVIDGFLIDQD 651 Y+++ + F ++ K+ +TATP +FG+ V + V G+L + D Sbjct: 161 -CMAPGYQKLWEMFPNSKKLGVTATPWRMSHCGFTSLFGDIVLAKSIEWFVNQGYLANYD 219 Query: 652 PPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAV 711 T Q + D + D D+ ++ + ++ A R Sbjct: 220 YISIKPTSEVQHAIN----------------GIDRMGADGDYLDSELS-AVIDKAKIR-- 260 Query: 712 CNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 +Y +K +++ + HA + + + ++ I G Sbjct: 261 AGLYKSYEKYAKGKKGIIYAIDRKHASNICDLYAT---------KGVSVCMIDGTTPTAE 311 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 R + I F + ++V V++ + G D P I I R +S LY Q GR R+ Sbjct: 312 R--EQKIADFANGSI-EVIVNVNIFSEGFDCPDIEFIQLARPTKSLSLYLQQVGRGLRIS 368 Query: 832 PEVNKTSFKIFDCVDIYSTLESV 854 K + I D V +Y+ + Sbjct: 369 --KGKETTIILDNVGLYNRFGTP 389 >UniRef50_C1XZ08 DNA/RNA helicase, superfamily II n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ08_9DEIN Length = 524 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 95/421 (22%), Positives = 151/421 (35%), Gaps = 89/421 (21%) Query: 438 PGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRI 497 P + L L Q+ A+ V G L+ MATG GKT ++ + S+ F+R Sbjct: 7 PSPALLPLHRVQQQALEQVLSLYESGHSRQLVVMATGVGKTLWSVHL------SRHFRRT 60 Query: 498 LFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 LFLV L +Q+L AF G I+ + + + V + SLV R Sbjct: 61 LFLVHFEELLQQSLAAFRR---RGGEPGVIW------GRRTDLEADVVVGMIPSLVHRL- 110 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-VKIA 616 E +P R+D +VVDEAH + R++ HF + + Sbjct: 111 ---ERVPPERFDLVVVDEAHHARSR-------------------TWERVIRHFRPRLLVG 148 Query: 617 LTATPALHTVQ----IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQ 672 L+ATP + +F + Y AV DGFL++ + G Sbjct: 149 LSATPYRTDGRSLLSLFDTLAFSYRLPEAVRDGFLVEPKILEVSTDQPLSIGRR------ 202 Query: 673 VERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCV 732 D++ A + + P N + + + ++K +V+ Sbjct: 203 -----------------GADYDEAQLSHAVDTPERNALLVRTVGEF---ARNRKGVVYAA 242 Query: 733 TNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVT 792 HA+ + R+ + A + G+ K K + R + ++ Sbjct: 243 GVRHAEHLAALFRS---------QGIAAESVYGEDPKRREK----LERHRRGEF-QVLTN 288 Query: 793 VDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE------VNKTSFKIFDCVD 846 LL D P+I V R S LYEQ GR RL E KT + D +D Sbjct: 289 AMLLVESYDDPTINLGVMGRPTASPTLYEQALGRPARLLREGRAWDGTPKTDYLWIDLMD 348 Query: 847 I 847 + Sbjct: 349 L 349 >UniRef50_B4D2R4 Type III restriction protein res subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2R4_9BACT Length = 572 Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 94/403 (23%), Positives = 147/403 (36%), Gaps = 71/403 (17%) Query: 440 MSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILF 499 MS LR YQ A AVE+ K Q L + TG GKT ++ R ++ R L Sbjct: 1 MSTFTLRDYQAAAADAVEEKWKK-HQSTLCVLPTGCGKTVLFAEIIRR----RQPGRALV 55 Query: 500 LVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKR-TLQ 558 + R L QA+ E + + + T + VA++Q+LV + Sbjct: 56 IAHREELIVQAVKKIEAVT---GLEAEVEMAEQVASNSLFHKTPVVVASIQTLVSGGNRR 112 Query: 559 SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF----DAVK 614 E +D IVVDE H ++YR +L++F A Sbjct: 113 RMERFRPEDFDTIVVDEFHHA-------------------TAASYRAVLEYFLRNEKAKL 153 Query: 615 IALTATPALHTVQIFG----EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKG 670 + +TATP G + Y R A+ DG+L+ + + I ++ + G Sbjct: 154 LGVTATPDRADQAALGLVCESVAFDYEVRAAIDDGWLVPVEQQMVTIDGLDYSQIHTTAG 213 Query: 671 EQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVF 730 D A+ + R + ++ GS++T++F Sbjct: 214 ---------------------DLNSAELASVM---EQERVMHGTCAATIEIAGSRQTILF 249 Query: 731 CVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIV 790 + A+M L + G D++ R+ I R + I+ Sbjct: 250 TSSVKQAEMACNILNRH--------RAGIAQFVCGATDREERRK---IMRRVLDGSTQIL 298 Query: 791 VTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE 833 V + T G D P + IV R +SR LY QM GRATR P Sbjct: 299 CNVGVATEGFDAPGVEVIVMGRPTKSRALYAQMAGRATRPLPG 341 >UniRef50_C4FCA5 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FCA5_9ACTN Length = 984 Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 187/551 (33%), Gaps = 99/551 (17%) Query: 435 ADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRF 494 + ++ QE A+ A+ + LL ATGTGKT + + ++ Sbjct: 231 ENEASSKKIKPNKMQEKALEALAALHERRDPRALLVSATGTGKTYLSAFDV----KAAAP 286 Query: 495 KRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK 554 R+LFL R+ + ++ +++ + T+ T+ ++ Sbjct: 287 VRVLFLAHRKRILTASMASYKKLLGDNYTYGLYRAGGDGTE----------FTCTFAMCS 336 Query: 555 RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA-V 613 + + +D IV+DEAHR Y+RIL+HF Sbjct: 337 TICGYLDKIDAELFDYIVIDEAHRVG-------------------AKGYQRILEHFKPKF 377 Query: 614 KIALTATPALHT-VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQ 672 + +TATP +F + Y+ + D D P Sbjct: 378 CLGMTATPNRTDGYDVFALFNHVIAYQITLQDALREDMLAPFHYFG-------------- 423 Query: 673 VERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCV 732 I D D+++ L A + +++ Y +K LVFC Sbjct: 424 ----------IADLAIDEEEQSDFTLFSKLTSEARVNHIIDKIEEYSVKKDGRKGLVFCS 473 Query: 733 TNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVT 792 A + ++ I G+ R +I + L + + Sbjct: 474 RLEEARELAKQFTQ---------RGYKSEAIDGNDSNAER--DEVIRKLESGEL-EYIFS 521 Query: 793 VDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIY---- 848 V++L GVDIP++ I+ LR+ S I++ Q GR R NK S + D + Y Sbjct: 522 VNILNEGVDIPAVNQIIMLRRTESSIVFVQQLGRGLRKAD--NKESTLVLDFIGNYQQNF 579 Query: 849 --------STLESVDTMRPVVVR-----PKVELQTLVNEITDSETYKITEADGRSFAEHS 895 + D +R +V P + + +++ Y+ + + A Sbjct: 580 LIPVALSGDKTYNKDRLRAIVKEGSTVIPGASTVS-FDRVSEGRIYQAIDQGDFTAARFL 638 Query: 896 HEQLVAKLQRIIGL-ATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWS 954 ++ + Q + + + + DR+ +ID L +++GF SR + Sbjct: 639 KDEYLGLRQMLGAIPSLLDFDRNGSIDP-------LLIFNKYDSYHGFLSRYEKAYDVTF 691 Query: 955 AEVFNKLPGFI 965 +E + F+ Sbjct: 692 SEAQENILKFV 702 >UniRef50_C1I4L0 Superfamily II DNA/RNA helicase n=6 Tax=Clostridiales RepID=C1I4L0_9CLOT Length = 1055 Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 102/606 (16%), Positives = 199/606 (32%), Gaps = 77/606 (12%) Query: 379 STNGREYRATMKTKSGIWYRDVRDTR-----NMSKALPEWHRPEELLEMLGSEPQKQNQW 433 T+G E+ + + + N S+ +P E+ + S +++ Sbjct: 252 LTSGLEWNIKITEQDSFDIIKKFEATFESYWNDSEFVPYLGSEEDKNILKKSLHKEKRID 311 Query: 434 FADNPGMSELGLRYYQEDAVRAVEKAIVK-GQQEILLAMATGTGKTRTAIAMMFRLIQSQ 492 + ++ YQ++ + + + + L+ ATG GKT + + Sbjct: 312 EEEFNFSFDIRPYAYQKEILDKLRVEREIFNKNKNLVIAATGVGKTVISAFDYKNFCKEN 371 Query: 493 RFK--RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQ 550 + + R+LF+V R + +QA F + + F + + PE + V ++Q Sbjct: 372 KKQPNRLLFVVHREEILKQARDTFRAI-LKDNNFGDLM----VGGNVPESLEHLFV-SIQ 425 Query: 551 SLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF 610 SL + L E YD I+VDE H +Y+R+L ++ Sbjct: 426 SLNSKDLC--EITTEDYYDFIIVDEFHHA-------------------AAPSYQRLLSYY 464 Query: 611 DA-VKIALTATPAL-HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLS 668 V + LTATP IF R + + + P Q + Sbjct: 465 KPKVLLGLTATPERADNKDIFKYFEDRISGEIRLPEAIDRKLLSPFQYF----------A 514 Query: 669 KGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTL 728 + V+ + + L + + + + L Y+ L Sbjct: 515 VSDSVDLTQIKWQRKGYNLSELSNVYTGN-------DIRVNEIVTALKKYVTDIDDVIGL 567 Query: 729 VFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPN 788 FCV+ HA + + I I + + ++ + + Sbjct: 568 GFCVSKEHAKFMSKRFNEL-----------GIASIALTDESRKEERSEAKSKLVNKEI-K 615 Query: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD-I 847 + DL GVDIP + I+FLR S ++ Q GR RL NK + D V Sbjct: 616 FIFVADLYNEGVDIPEVNTILFLRPTESLTVFLQQLGRGLRLHE--NKECLTVLDFVGQA 673 Query: 848 YSTLESVDTMRPVVVRPKVELQTLVNEIT---DSETYKITEADGRSFAEHSHEQLVAKLQ 904 + + + R ++ R K ++ + Y E + + + + + Sbjct: 674 HKNYDFEEKFRALIGRSKSSVKDYIENGFLTLPKGCYIQLEKEAKEYILRNIKSATNS-- 731 Query: 905 RIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGF 964 + N+ ++ ID + E D ++ F R + + + F Sbjct: 732 ---KINLINKLKAFKIDTDLELTLENFLDYHNLSLTDFYGSTRNRSFARMCVLAEERKDF 788 Query: 965 IARLEK 970 E+ Sbjct: 789 NDENEE 794 >UniRef50_C8WVJ5 Type III restriction protein res subunit n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WVJ5_ALIAD Length = 607 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 82/421 (19%), Positives = 140/421 (33%), Gaps = 59/421 (14%) Query: 433 WFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQ 492 F + L LR YQ +AV A+ + + +L ATG GKT + ++ Sbjct: 2 QFIVAKHQNNLKLRDYQVEAVDAIRRYP---KPRPVLVAATGAGKTVISSQFAVERLERG 58 Query: 493 RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL 552 +LFL R L +Q L F I + + VA+VQ++ Sbjct: 59 P---VLFLAHRDELLDQTLDKFSVVFDALAEKGREVKIGRIQGPDDDVEADFAVASVQTI 115 Query: 553 VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA 612 + ++ DE H + L F + Sbjct: 116 SQPERLERWMAAHETTPTVITDECHHATARTYMRIYHALGFLGSVPEGH----------- 164 Query: 613 VKIALTATPALHTV----QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLS 668 V + LTATP +++ Y + G+L+ Sbjct: 165 VHLGLTATPYRTDKADLRKVYDGVAYAIGIHDLIDMGWLVPPKSV--------------- 209 Query: 669 KGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTL 728 K E VE + + +D D+ A+ + P+ N+ + + + T+ Sbjct: 210 KLEIVEGL--------EGKDDGADWSDAEVEGAVDTPSVNKQIV---AAWQAQASDRLTI 258 Query: 729 VFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPN 788 FC + HA + EE A + + G K+ R+ + F+ + Sbjct: 259 AFCASVEHAYHLAEEFEKA---------GVPVAVVHGALPKEERR--QTLDAFSDGNI-R 306 Query: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIY 848 ++ +LT G D P + I+ R S LY Q GR R+ P + K + D V + Sbjct: 307 VLCNYGVLTEGFDRPEVSCIIMARPTLSHSLYVQCVGRGLRIAPHIFKQDCLVLDVVGVT 366 Query: 849 S 849 Sbjct: 367 D 367 >UniRef50_B9CN59 DNA/RNA helicase n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CN59_9ACTN Length = 865 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 87/383 (22%), Positives = 141/383 (36%), Gaps = 75/383 (19%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 + LR YQ +AV +V + G + LL+MATG GKT ++ R+ + R L L Sbjct: 1 MELRPYQVEAVESVFREWESGNRRTLLSMATGCGKTICFAEIVKRVAATGG--RSLILAH 58 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 R L EQA + T ++ ++ V +VQ+L+++ Sbjct: 59 RGELLEQAADKIQR------TSGLESALEKAESTSLNSWARVTVGSVQTLMRQ--DRLNA 110 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTAT- 620 R+D I+VDEAH Y RILDHF A + +TAT Sbjct: 111 FAPNRFDAIIVDEAHH-------------------TLAEGYIRILDHFKGARVLGVTATA 151 Query: 621 ---PALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 +++ + Y A+ DG+L + + + + V Sbjct: 152 DRADKKDLGEVYDSIAFEYGIAQAIKDGYLCPIEAEMVPLELDVSS-------VSVTHGD 204 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHA 737 Q + D LE D A+ + + ++T+VF A Sbjct: 205 YQAGQLGDALEPYLD-----------------AIADAMVT---RCQDRRTVVFLPLVRTA 244 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 E+L I + D + + +++ FN+ + ++ LLT Sbjct: 245 KAFAEKLNERGL-------------IVCEVDGQSEDREEILSDFNRGKY-QVLCNSMLLT 290 Query: 798 TGVDIPSICNIVFLRKVRSRILY 820 G D PS+ IV LR +SR LY Sbjct: 291 EGWDCPSVDCIVCLRPTKSRGLY 313 Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 13/24 (54%) Query: 822 QMKGRATRLCPEVNKTSFKIFDCV 845 QM GR TRL PE K + D + Sbjct: 652 QMVGRGTRLSPETGKEKLLLLDFL 675 >UniRef50_Q6F1F2 DNA repair DNA/RNA helicase n=3 Tax=Entomoplasmatales RepID=Q6F1F2_MESFL Length = 905 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 93/489 (19%), Positives = 174/489 (35%), Gaps = 83/489 (16%) Query: 382 GREYRATMKTKSG--IWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP- 438 GRE+ + ++ + + + + N+ E E+L + ++ Q + Sbjct: 132 GREWNIKLTEQNNKELINKMINEFDNLWNEEFVDFSNEFERELLIQKIKENQQAVVQSKI 191 Query: 439 -----GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLI-QSQ 492 +++ L +Q++ + + + + L+ MATGTGKT + R Q++ Sbjct: 192 ELLSNNLTKKYLYKFQKEIIDKLSYRRHINKNKNLVIMATGTGKTLVSAFDYKRQSGQAK 251 Query: 493 RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL 552 + +ILFL +R + +QA+ + + + F + + + P AT+Q+L Sbjct: 252 KDLKILFLAHQREIVDQAIKTYRHV-LENNKFGEVMYDGSINSEKPIH----LFATIQTL 306 Query: 553 VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA 612 R +D IV DEAH + + ++ ++F Sbjct: 307 STRL----NKFKPNDFDIIVYDEAHH-------------------IAANTFDKVFNYFKP 343 Query: 613 VKI-ALTATPALHT----VQIFG-EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVY 666 +I LTATP F E A+ L D T +GV Sbjct: 344 QQILGLTATPEREDNKDIKAYFDDEYATELRLWDAIDQKLLCPFDYYCIDDTNTNLQGVN 403 Query: 667 LSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQK 726 L+ D + + + N + + YL Sbjct: 404 LNSD-------------------------KDIFKVVNTDSRNELLFKTIEKYLGVYARPT 438 Query: 727 TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERL 786 L+FCVT HA + L + +K ++ + + ++ F+ R+ Sbjct: 439 ALIFCVTVEHAINISNYLNS------------KNLKAEVLTSQNTKDRKRILHEFSTGRI 486 Query: 787 PNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD 846 N + V++ GVDIP I I+ LR S+ +Y Q GR R NK +++D + Sbjct: 487 -NYLCVVNIFNEGVDIPEINTIILLRPTNSKTVYLQQLGRGLRKTELKNK--LEVYDLIS 543 Query: 847 IYSTLESVD 855 + Sbjct: 544 NIDNKYDIT 552 >UniRef50_UPI00016C5789 putative DEAD box family helicase, phage associated protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5789 Length = 611 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 95/525 (18%), Positives = 171/525 (32%), Gaps = 73/525 (13%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 + R YQ+ +V V G+ L+ + TG GKT + + + R R+L L Sbjct: 2 ITPRPYQKQSVDRVFGRFDAGEPSTLVILPTGCGKTVVFGLVSQQWARECRPGRVLVLAH 61 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 R L +QA + + D+ + V +VQ+L + + Sbjct: 62 RDELIQQAAEELQGITGSAPAIEQADRYAVPAGGSMGDAPSVVVGSVQTLCR--DRRLAR 119 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-IALTATP 621 P + IV DE H +YR+I DHF A K + +TATP Sbjct: 120 WPKDEFGLIVTDECHHATS-------------------PSYRKIYDHFGAAKRLGVTATP 160 Query: 622 ALHT----VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 +FG + AV +G+L + ++ Sbjct: 161 KRADDLALGHVFGSVAFDMGICDAVDEGWLCP---------------------VEQRYVT 199 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHA 737 G ++ DF L + + ++ G + TL+F Sbjct: 200 VNGMDLSAVKTAGDDFSDGAIGAVLSGDSVLDQMV---AATIELCGDEPTLIFTAPRPPG 256 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 + V + F +++ + + ++G+ DKD R+ + I F + +V L T Sbjct: 257 EQVSQ--GDLFADALNKIKPERAVFLSGETDKDVRRRE--IELFERGE-RQFLVGCSLFT 311 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATR-----LCPEV-------------NKTSF 839 G ++P I +V R +S Y Q GR TR L P++ K S Sbjct: 312 EGFNVPKISRVVMARPTKSNAYYTQAIGRGTRTLRGTLHPDLATPEARRAAIAASAKPSV 371 Query: 840 KIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQL 899 + D V + + + + ++ K D + + + + Sbjct: 372 LVIDFVGNSGRHKLISAVDIFAGNHPQSVVDRAKRNAANDAAKGLHRDVKQVLDEAAREE 431 Query: 900 VAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFAS 944 + R + +D + +D A + AS Sbjct: 432 RKEAAERRRKEKKARVKVNRVDMHQQTVDPFAASDAPGQRDRLAS 476 >UniRef50_Q4A127 Type-1 restriction enzyme R protein n=77 Tax=cellular organisms RepID=HSDR_STAS1 Length = 930 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 130/839 (15%), Positives = 278/839 (33%), Gaps = 121/839 (14%) Query: 290 ETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSP 349 + + D + + P+ +E KR ID+ N+ RY K G R L S Sbjct: 116 DDTYKARYDVTILINGLPLVQIELKRRGIDINEAFNQVMRYRKQNYTGLFRYIQLFIISN 175 Query: 350 DEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTR--NMS 407 + + +G Y++ M ++ D + R ++ Sbjct: 176 G---------------------IDTRYISNNDGEIYKSHM-----FYWSDKENNRINTLN 209 Query: 408 KALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEI 467 + + RP + +M+ + + +R YQ AV A+ + Sbjct: 210 EFTETFLRPCHIAKMISRY------MILNETDNILMAMRPYQVHAVEALIHQATETSNNG 263 Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSI 527 + TG+GKT T+ L + K+++FLVDR+ L Q F + + + + Sbjct: 264 YIWHTTGSGKTLTSFKASQVLSEQDDIKKVIFLVDRKDLDSQTEEEF--NKFSKGSVDKT 321 Query: 528 FDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYD--CIVVDEAHRGYILDKE 585 + L + + S + V T+Q + K + E + + D ++DE HR D Sbjct: 322 NNTAQLVKQLKDKSLPLIVTTIQKMSKAIQNNAEALDQYKTDKVVFIIDECHRSQFGDM- 380 Query: 586 QTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATP---------ALHTVQIFGEPVYR 635 +R + HF +A T TP T IFG ++ Sbjct: 381 -----------------HRIVRQHFNNAQYFGFTGTPRFEENQSQDGRSTADIFGRCLHT 423 Query: 636 YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDT--------- 686 Y + A+ DG ++ I + + E VE I+ ++D Sbjct: 424 YLIKDAIHDGNVLGFSVD--YINTIKAQNIDTETDELVEGINTDEVWLSDQRVELIARHI 481 Query: 687 LEDDQDFEVADFNRGLVIPAFNRAVCNEL-------TNYLDPTGSQKTLVFCVTNAHADM 739 E+ + + A+ +Y P + + Sbjct: 482 TENHDKYTRNRQYSAIFTVQSIPALVKYYDAFKKISKDYEHPLKVAGVFSYAANEERNEG 541 Query: 740 VVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFN---KERLPNIVVTVDLL 796 V+E + K + +++ D + K+ ++++ V++ Sbjct: 542 EVDEAHSRGKLEEVIQDYNLNFGTNFSTDTFQEYFNHISKNVKKGVKDNKIDVLIVVNMF 601 Query: 797 TTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV-- 854 TG D + + + ++ L Q R R+ E K KI + D+ ++ Sbjct: 602 LTGFDSKVLNTLYVDKNLKYHDL-IQAYSRTNRVEKET-KPFGKIVNYRDLKQNTDNALK 659 Query: 855 ------DTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIG 908 DT R ++ V+ + + + + D + + ++ + R++ Sbjct: 660 LFSQTEDTDRVLMRDYDEYKAEFVDALAELKAVALKPQDMDQVQDENEKKAFVEAFRLVS 719 Query: 909 ---LATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFI 965 L D + + ++ +D F + ++G + N + I Sbjct: 720 KLVLRLKAFDEFDFTKANIGMNEQEFEDYKSKYFAIYDEVKPKRGEVEKVSILNDIDFEI 779 Query: 966 ARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPAL 1025 L + +++ + D +D+ D+ + +D + ++ + + L Sbjct: 780 EILRNDRINVSYIMDLVRQIDLKDKA--------EQQRNRDQI---RRMLDNADDPTLRL 828 Query: 1026 QAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGD 1084 + RDL R+ + ++ EE ++ +A+ N + ++ AV + Sbjct: 829 K------RDLLREFIDDVIPELS----EEDNIDEAYILFENAKRESEFNQFAQQQAVDE 877 >UniRef50_Q8YK43 All8075 protein n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YK43_ANASP Length = 681 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 89/419 (21%), Positives = 157/419 (37%), Gaps = 76/419 (18%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ ++ + + +G + +L + TG GKT + + Q + +++L + R Sbjct: 10 LRNYQHQWIKDIWNSWKRGNRRVLAQLPTGAGKTICFAHICQKFFQ--KQQKVLVIAHRI 67 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L QA E I G+ I +I VA++Q+L +R + P+ Sbjct: 68 ELITQAAEKLEQ--IVGEPVGII-----KGGCAAHPERRIQVASIQTLARRDILEL-PLN 119 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPAL 623 + ++ DEAH S+YRR+++H+ +A + +TATP Sbjct: 120 IG---LLLFDEAHHSS-------------------ASSYRRLIEHYQEAQILGVTATPQR 157 Query: 624 HTVQ----IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ 679 Q +F + V + T + +G+L ++ T N Q Sbjct: 158 IDGQGFQELFDDLVVGISTSTLIKEGYLSK----FRLFTTN------------------Q 195 Query: 680 GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADM 739 + DF + + + NYL + +T++F + H Sbjct: 196 TISTIGVKKSRGDFRAKELAVAVTSQIGVDEI---FQNYLKYAKNLRTVIFACSLEH--- 249 Query: 740 VVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTG 799 L A F++ + EH + G+ + R ++ RF ++ ++LT G Sbjct: 250 -SRALAAKFRRNGIKAEH-----LDGETPPELRV--QILERFR-GGETQVITNYEILTEG 300 Query: 800 VDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMR 858 D P+I I +R S L+ QM GR R K + I D D + D R Sbjct: 301 YDCPNIECIYCVRPTESSTLWLQMTGRVLRTH--TLKPTAVIIDVTDNWKKHGLPDEQR 357 >UniRef50_B3RW31 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RW31_TRIAD Length = 607 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 89/500 (17%), Positives = 168/500 (33%), Gaps = 44/500 (8%) Query: 495 KRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK 554 ++L L R L +QA + S+ +G P+ + VA+V +L + Sbjct: 22 NKVLVLAHREELIDQAYRHLCSSLPQ----KSVDIEQGKRQASPD--ADVVVASVPTLGR 75 Query: 555 RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK 614 + E ++ IV+DEAH + G + + + D + Sbjct: 76 KYSSRIERFDPNQFKLIVIDEAHHSSATSYLRVLGHFNALLNDETLPIKNKDGTRSDILV 135 Query: 615 IALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 T T FG + +Y + + PI + + Sbjct: 136 WGCTGTLQRSDGVGFGNVYEQVSYSRTLFQMWEEKWLAPINAYSIHTDAD---------- 185 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 ++ ++ DF V+ + + P N + N+ D + TLVF Sbjct: 186 --------LSKVAKNQFDFVVSQLVKQINTPERNNTIVKAWLNHKDNF--KSTLVFSANR 235 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 HA + E R L + G D R +++ F +++ P +++ Sbjct: 236 QHAKDLTEAFR---------LSGKEAHLVDGQTPSDDR--AELVSNFKEQKFP-VMINCG 283 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV 854 + T G DIP I I+ R RS L++QM GR R P +K +FDC D +S + V Sbjct: 284 VFTEGTDIPCIDCIILARPTRSSTLFQQMVGRGLRTFP--DKEYCTVFDCFDNFSGCDIV 341 Query: 855 DTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNR 914 V + P + E ++E + + S + + + + + Sbjct: 342 TLPSLVGLPPNFNCEGQDLVKVHHEMQSLSENNTDCYHASSLSEAREMSKESVMGHSIDY 401 Query: 915 DRSETIDKQV--RRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEK-- 970 + ID + + + + N +++ K + L K Sbjct: 402 PTNSEIDPAMWNHTNSSEPKISPILFDNKEINKVHYTMWRKFYMQIRKDSVWGLSLNKNS 461 Query: 971 LKTDINNLNDAPIFLDIDDE 990 + N + +F+ I D Sbjct: 462 IYVLKNGAGNFDVFVHIVDR 481 >UniRef50_D2LJT9 Type III restriction protein res subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJT9_RHOVA Length = 473 Score = 212 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 94/412 (22%), Positives = 150/412 (36%), Gaps = 85/412 (20%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 LR YQ + A+ + + +L+ + TG GKT A M ++R KR++F Sbjct: 3 FALRPYQAKLITDTRDALRE-AKSVLVQLPTGGGKTAIAAYMAG--SAAKRKKRVVFGCH 59 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 RR L +Q + F+ I F I D P+ I +A++ +L KR + P Sbjct: 60 RRELIKQTMKTFQKVGI---PFGVI-----AADFTPDPRQPIQIASIPTLAKRLDRYPAP 111 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF---DAVKIALTA 619 D V DEAH + + ++D F + L+A Sbjct: 112 ------DLYVPDEAHHAG-------------------AATWAEVIDSFARRGTKTVGLSA 146 Query: 620 TPALHTV----QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVER 675 TP + F VY + + +GFL P ++ Sbjct: 147 TPERLDGTGLGRWFDTMVYGPSTAWLIENGFL----SPYRLF------------------ 184 Query: 676 ISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNA 735 +P + DF A A N + +Y ++ +VFCV+ Sbjct: 185 -APGTIDVTGIKRTAGDFNKAALEERASTSAI---TGNAVEHYARFARGRRAMVFCVSIK 240 Query: 736 HADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 H+ VVE +AA + D + +I F ++ I+ +VDL Sbjct: 241 HSMSVVERFQAAGFR-------------AAHIDGKSENRDELIAAFETGQI-QILCSVDL 286 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDI 847 ++ G D+P++ + LR +S LY Q GRA R P KT I D Sbjct: 287 VSEGFDLPALECAILLRPTQSLALYLQQVGRALRTHP--GKTEAIILDHAGN 336 >UniRef50_B4CXK7 Type III restriction protein res subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXK7_9BACT Length = 445 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 92/409 (22%), Positives = 147/409 (35%), Gaps = 75/409 (18%) Query: 439 GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRIL 498 S++ LR YQ A A+++ + Q LL + TG GKT + + + +R L Sbjct: 4 SPSKVALRGYQVAAHEAIQRGFAE-HQRQLLVLPTGGGKTVVLAHLAA----THQPRRTL 58 Query: 499 FLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQ 558 L R L QA+ + + D + + VA+VQ+LV+ + + Sbjct: 59 VLAHREELITQAVDKIRAV-------TGLIPEVEMADFRASLNAPVVVASVQTLVRSSRR 111 Query: 559 SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD--AVKIA 616 E P + +VVDEAH +Y L +FD A + Sbjct: 112 --ERWPHDHFGLLVVDEAHHS-------------------LADSYLNTLRYFDENAFVLG 150 Query: 617 LTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERI 676 +TATP + G Y ++D L+ Q+ I + + L Sbjct: 151 VTATPDRGDKKNLGRYYQNIPYEVTLLD--LVQQNWLSPIRVKTVPLEIDL--------- 199 Query: 677 SPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAH 736 +D D+ D + + V + L ++ +K LVF + Sbjct: 200 -------DDVGTTAGDYNAQDLGHAI--EPYLERVADVLAEHV----QRKILVFLPLISL 246 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLL 796 + E R + D D R ++ RF + ++ LL Sbjct: 247 SRGFAELCRQ-----------RGLRAEHVDGTSDDRG--DILARFRRGE-TRVLTNAMLL 292 Query: 797 TTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 T G D PSI +V LR + R LY Q+ GR TRL P K + D + Sbjct: 293 TEGYDEPSIDCVVCLRPTKIRSLYSQIVGRGTRLYP--GKDHLLLLDFL 339 >UniRef50_C3X5U1 Type I site-specific deoxyribonuclease n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X5U1_OXAFO Length = 978 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 138/849 (16%), Positives = 275/849 (32%), Gaps = 100/849 (11%) Query: 290 ETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSP 349 E + D + + P+ +E KR + ++ ++ RY + + Sbjct: 95 EGEYENRYDVTILINGLPLVQIELKRKDTELKVAFDQINRYRYHSYDAGIGLFQYV---- 150 Query: 350 DEVHEAVPEYETSWQDTSGKQRFKIPFCYST----NGREYRATMKTKSGIWYRDVRDTRN 405 ++ ET + + Q F F + N R T + + + Sbjct: 151 -QIFIISNGNETKYFANNPGQSFD--FTFYWSDENNKRITSLQEFTDTFLRPCHIVKMIA 207 Query: 406 MSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELG-LRYYQEDAVRAVEKAIVKGQ 464 L + ++ E + + + + Q L LR YQ AV A+ + Sbjct: 208 KYIILAQEYKEESEVGLKRKKGKTAAQAIKREVTKRYLVILRPYQYYAVEAIVNKVKNCN 267 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDT--RINGD 522 + TG+GKT T+ + + +++LF+VDR+ L Q AF Sbjct: 268 DNGYIWHTTGSGKTLTSFKASQIIDTLENVEKVLFVVDRKDLDNQTAEAFNQYQEGSVDG 327 Query: 523 TFNSIFDIKGLTDKFPE-DSTKIHVATVQSLVKRTLQSDEPMPVARYD----CIVVDEAH 577 T N+ IK L D + STK+ V T+Q L +Q + + DE H Sbjct: 328 TSNTKALIKQLADSAIDKSSTKLIVTTIQKLNNAVMQPKFSKQIEHLKNKKVVFIFDECH 387 Query: 578 RGYILDKEQTEGELQFRSQL----------DYVSAYRRILDHFDAVKIALTATP-ALHTV 626 R + Q + ++Q+ D S+ I + T T Sbjct: 388 RSQFGETHQNIKKFFNKAQMFGFTGTPIFADNASSGMGIQKALKEGTLLTDGTEIKKTTK 447 Query: 627 QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVI-ND 685 +FGE ++RY A+ DG ++ ++ I + Q G + QVE I + D Sbjct: 448 ALFGECLHRYIITDAIRDGNVLPFS--VEYIGQYKQNGTGTTLDIQVEDIDTEELFESED 505 Query: 686 TLEDDQDFEVADFNRGLVIPAFNRAVC----NELTNYLDPTGSQKTL---------VF-- 730 L + +++ + F C L Y D ++ +F Sbjct: 506 RLRKITRYILSNHDAKTKQRQFTAMFCVSGVKTLIKYYDLFKEEQAKLGTDLTIATIFSY 565 Query: 731 CVTNA-------------------HADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 + + R ++ T Sbjct: 566 APNEEDPNAHGFDIGAIPDEELEVDSKKMSPFSRDRLEEFIGDYNARFGTSYTTKDSDSF 625 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 I+ + +I++ V++ TG D + + + ++ L Q R R+ Sbjct: 626 YNYYKNISDRTRNGEIDILLVVNMFLTGFDSKRLNTLYVDKNLKYHGL-IQAYSRTNRII 684 Query: 832 PEVNKTSFKIFDCV-------DIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKIT 884 ++K+ +I D + S D V++ P NE + Sbjct: 685 -NIHKSHGQIVCFRNLKKQTDDAIALFASKDAKEVVLLEPYGHYVKKFNEGVTRLLEIVP 743 Query: 885 EADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFAS 944 + + E+ + V + + ++ L + + + + ++ + G N S Sbjct: 744 DVNVVLEDENEQLEFVKRFRELLRLYNILKSFCDFQENDLLLTEQQMAEYMGKVRNLQYS 803 Query: 945 RLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTP 1004 ++ G + + D++ D +I+ + ++ + TP Sbjct: 804 ISKQTGKQKVS---------------ILKDVDFFLDVMHSDEINVSYI-LRKCFELKKTP 847 Query: 1005 QDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKET 1064 +D ++ +Q N P+L + R+L K + E S+ + + Sbjct: 848 EDKIDKKRKEIQNLLNTSPSL----HSKRELIEKFIEENLPKISSG----DSIEALFADF 899 Query: 1065 RNEDIAARL 1073 RN++ AA L Sbjct: 900 RNKEAAAAL 908 >UniRef50_A6VYC7 Type III restriction protein res subunit n=5 Tax=Gammaproteobacteria RepID=A6VYC7_MARMS Length = 586 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 119/664 (17%), Positives = 220/664 (33%), Gaps = 119/664 (17%) Query: 441 SELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFL 500 LR YQ AV A ++ + TG GK+ + RL + R++ L Sbjct: 3 QTFQLRDYQIQAVEASLDHFRSSNDPAVIVLPTGAGKSLVIAELS-RLAKG----RVVCL 57 Query: 501 VDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD 560 + L EQ F T + F++ K T+K A++QSL + + Sbjct: 58 AHVKELVEQNHAKFLATGSSAGIFSAGLSQKTSTEKT-------TFASIQSLSASLVDFN 110 Query: 561 EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-----I 615 EP+ I++DE HR + + Y + ++HF A+ + Sbjct: 111 EPVS-----LIIIDECHRVGMEES----------------GQYNKTIEHFRALNPKVKIL 149 Query: 616 ALTATPAL-----------------HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIIT 658 LTATP T +F + ++ + V G+L PPI Sbjct: 150 GLTATPYRLGSGWIYQNHYHGYTRTCTNSLFKKCIFELPLQHMVKKGYL---TPPIHYDA 206 Query: 659 RNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVI-PAFNRAVCNELTN 717 A L + ++L+ +Q+ + N + P +AV ++ Sbjct: 207 AIAHYDFSL---------------LTESLDGEQNTDDIALNELIHKHPRVTKAVTEQILQ 251 Query: 718 YLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTM 777 Q ++F T HA + L D ITG ++ ++ Sbjct: 252 L--SQDRQGVMIFAATIDHAKEIASYL-----------PADKTALITGKT--KLKQRDSL 296 Query: 778 ITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKT 837 I F + + +V V +LTTG D P + I LR +S L++Q+ GR RL P K Sbjct: 297 IAAFKAKEI-KYLVNVSVLTTGFDAPHVDVIAILRPTQSISLFQQIVGRGLRLSP--GKK 353 Query: 838 SFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHE 897 + D + + +P + + ++ +I GR AE + Sbjct: 354 DCLVLDYTNNGYNI-----FQPEIGEKRPTQDSVAVQIHCPSCDFANTFWGRKDAEGN-- 406 Query: 898 QLVAKLQRIIGLATFNRDRSETIDKQVRRLD-----ELCQDAAGVNFNGFASRLREKGPH 952 ++ R N E R D A A +L + Sbjct: 407 -ILEHFGRRCHGLLENEQGEEQQCSYRFRFKRCPYCNEENDIAARQCQHCAEKLIDPD-D 464 Query: 953 WSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFD 1012 N + R + ++N + + D++ +++ + Sbjct: 465 LLRSALNLKNNKVLRCSGITPELNIKEKSIKIIYHDEDGLTLSETFRFNFKKS------- 517 Query: 1013 SLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAAR 1072 +++ N A + N + + + E++ + A K+ ++ + R Sbjct: 518 ---RQTFNDLFARRI-ANGSQSIQFDKIEEIERFLPY--LPTPDFVIAKKQKQHWQVTER 571 Query: 1073 LIGH 1076 L + Sbjct: 572 LFDY 575 >UniRef50_Q8YKY1 Alr7157 protein n=2 Tax=Nostocaceae RepID=Q8YKY1_ANASP Length = 629 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 81/427 (18%), Positives = 146/427 (34%), Gaps = 83/427 (19%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 LR YQ+D + A G +++LL ++TG GKT + ++ +L + Sbjct: 2 FNLRDYQQDLISKTFAAWSSGIRKVLLQLSTGGGKTVIFAEIASKMTAQGEG--VLVVAH 59 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 R L QA + + + + + +A++Q+L +R Sbjct: 60 REELILQAAEKLTAV--------TKLQPGIIKAGYKSTDSPLQIASIQTLARRQTYPSAQ 111 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILD-HFDAVKIALTATP 621 +++DEAH ++YR++LD + A+ + LTATP Sbjct: 112 -------LVIIDEAHHSS-------------------ANSYRKLLDAYPHALVLGLTATP 145 Query: 622 ALHTV----QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 IF + + + + G+L D G S+ + ++ Sbjct: 146 RREDGYGLRDIFDHLICSVSTKELITLGYLTDYKLI---------AGFKYSRHKVPQKRD 196 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHA 737 + + + D + EV L + + +KT++F V H+ Sbjct: 197 FTRKELEEVASDYKPSEV-------------------LKQWQNFCAGKKTVIFAVNVMHS 237 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 + A + + G+ + R Q ++ RF + ++ +LT Sbjct: 238 KQIAAAFCA---------DGITCEHLDGETPHNER--QAILNRFRSGQ-TQVISNCAILT 285 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTM 857 G D P V R S L+ QM GR R P K I D D + L Sbjct: 286 EGFDCPDSSAAVIARPTSSVTLWLQMIGRVLRPAP--GKDYATILDMTDNWFRLGRPCDN 343 Query: 858 RPVVVRP 864 R + P Sbjct: 344 RKWSLEP 350 >UniRef50_Q2S3K0 HsdR n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3K0_SALRD Length = 1049 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 131/777 (16%), Positives = 252/777 (32%), Gaps = 108/777 (13%) Query: 296 FADYVLFVGLKPIAVVEAK---RNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEV 352 D +++V P+ V E K R ++DV N+ Y + F Sbjct: 151 RPDLIIYVNGLPLVVFELKNPYREDVDVENAFNQLQHYKQELGRLFSFNA---------- 200 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 FC ++G E + + S W++ + A Sbjct: 201 -----------------------FCVLSDGTETLQGVHSASREWFKPWMSADGETIADDR 237 Query: 413 WHRPEELLEMLGSEPQKQN------QWFADNPGMSELGLRYYQ----EDAVRAVEKAIVK 462 + L+E L + + + G+ + G Y+Q AV +A Sbjct: 238 RQSIDTLIEGLFPKERLLSYVRNFIVHETVGGGIRKKGALYHQFFGVRRAVEETLRATGP 297 Query: 463 G--QQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRIN 520 G Q+ ++ G GK+ + + ++ L + IL VDR L EQ AF + Sbjct: 298 GGDQKIGVIWHTQGAGKSLSMVFLVGILRRRLGNPTILIEVDRNDLDEQLYDAFVAAKPL 357 Query: 521 GDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVV-DEAHRG 579 + + I+ L + + ++ T++ + +++ P R D +V+ DEAHR Sbjct: 358 VGSVHQAEGIEDLRQRLQTEGGEVVFTTIEKFQLKGEETEHPQLTGRDDVVVIADEAHRT 417 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATP----ALHTVQIFGEPVY 634 + + + + + + + +A I T TP T +FG+ ++ Sbjct: 418 QYGFEGEVRYDEETGEHFTAYGYAKYLREALPNASFIGFTGTPIAEDDRDTTAVFGDLIH 477 Query: 635 RYTYRTAVIDGFLIDQDP-PIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDF 693 Y + A DG ++ P I + E + E E + E Sbjct: 478 SYDMKQAKKDGAVVGIQYEPRLIELKLTNENIDEELSEIAEGEDVEVEKQK--------- 528 Query: 694 EVADFNRGLVIPAFNRAVCNELTNYLD---PTGSQKTLVFCVTNAHADMVVEELRAAFKK 750 + + +L + + K ++ ++ + + E + Sbjct: 529 -WSAMEEAAGTDERQSQLAEDLIEHFQKRCQSIEGKGMIVGMSRENCVGLYEAIVDQRPS 587 Query: 751 KYPQLEHDAIIKI--TGDADKD------------ARKVQTMITRFNK-ERLPNIVVTVDL 795 + IK+ TG+ +D R+ + RF + + + D+ Sbjct: 588 WHDPALDQGKIKVVMTGNISEDPPEWNERGHITTKRQRGQLKERFKDPDDELKLAIVCDM 647 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD 855 TG +IP + + + ++ L Q R R+ +K + + D + I + L+ Sbjct: 648 WLTGTNIPCLHTLYIDKPMKGHNLM-QAIARVNRVF--RDKPAGLVVDYIGIGTELKKAT 704 Query: 856 --TMRPVVVRPKVELQT-----------LVNEITDSETYKITEADGRSFAEHSHEQLVAK 902 P EL+ V E T K A R ++ E V + Sbjct: 705 KRYTDQGFDEPTEELEEAAFGQFEEALSAVRETLPGGTDKDDIAGWRDLSKIDFEDFVGR 764 Query: 903 LQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLP 962 L RD +K++R+ L Q +A + + K Sbjct: 765 LYDFYLETDDRRDDFLKKEKRLRKAHSLIQHRD--EVEDYADEVAFYQFVRTQLKRTKEG 822 Query: 963 GFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTP------QDFLEAFDS 1013 G ++ + + D +E V + G D P ++FLE F S Sbjct: 823 GGGDGRDEDEDRAAAIRDLVERSIDAEEAVDIYEAAGL-DKPDISILDEEFLEEFKS 878 >UniRef50_A4J7S3 Type III restriction enzyme, res subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J7S3_DESRM Length = 459 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 92/518 (17%), Positives = 181/518 (34%), Gaps = 80/518 (15%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 LR YQE + V G+++ + G GKT M + + R + +LF V Sbjct: 2 FKLRPYQELLIEGVRDEFRSGRRKTCIVAPCGAGKTVIMAWMAAQ--SATRGQSVLFAVH 59 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 R+ L +Q+ F I G +I + ++ ++ +R + + P Sbjct: 60 RQELIDQSSETFTAMGIQHGIIAPGCSATG---------DQIQIGSIFTVARRLDRINPP 110 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATP 621 + I+ DE+H + + ++++ F A I LTATP Sbjct: 111 ------NVIIFDESHHA-------------------KANTWVKLMEAFPQAFVIGLTATP 145 Query: 622 ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGE 681 A G+ +V P + + + + + Sbjct: 146 ARTNGDGMGDIFESLVLGPSVKQLIEWGNLTPYKYFAPPVKANLDGLRVKY--------- 196 Query: 682 VINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVV 741 D+ +D + + + + + Y T ++ + +CV+ AH++ Sbjct: 197 ---------GDYIKSDITLAM---DRSEIIGDAIEQYKKLTDGKRAIAYCVSRAHSEHTA 244 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVD 801 E RAA I G+ ++ RK I +F + ++ VDL++ G D Sbjct: 245 EMFRAA---------GIPAQHIDGETEQGVRK--AAIDQFRTGNI-KVLCNVDLISEGFD 292 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVV 861 +P++ ++ LR +S L+ Q R R + I D V D R Sbjct: 293 VPAMEAVLLLRPTQSLTLHIQQSMRPMRPDKDNPDKVAIIIDHVGNCYRHGLPDEDRSWS 352 Query: 862 VRPKVELQTLVNEITDSETYKITEAD---------GRSFAEHSHEQLVAKLQRIIGLATF 912 + K + T E++ + K A G +A + + ++ + Sbjct: 353 LEGKKKNSTGPREVSLRQCPKCYAAHRPAPVCPLCGYQYAPTERAEPDKRQGELVKVDEI 412 Query: 913 NRDRSETIDKQVRRLDELCQDAAGVNFN-GFASRLREK 949 R R + +Q R + +L + A + G+ +++ E Sbjct: 413 ERQRKKQEIRQARNITDLEEIALRRGYKLGWINKMAEL 450 >UniRef50_B5JP68 Type III restriction enzyme, res subunit family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JP68_9BACT Length = 578 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 91/484 (18%), Positives = 165/484 (34%), Gaps = 61/484 (12%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ++AV + + + ++ + TG GK+ + R+L L + Sbjct: 4 LRTYQQEAVDSTLNHFRRKRTPAVIVLPTGAGKSLVIAELAKIA-----KGRVLVLAHVK 58 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L EQ +E + +++ + K K+ ++QS+ + E Sbjct: 59 ELVEQNHLKYESYGLQAGIYSAGLNQKN-------GERKVIFGSIQSVANASDDFFE--- 108 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRI-LDHFDAVKIALTATPAL 623 + +V+DE HR + Y +R+ L++ + LTATP Sbjct: 109 --DFTLLVIDECHR------------VGLEPDSQYAKVIKRLKLNNSRICILGLTATPYR 154 Query: 624 HTVQIFGEPVYRYTYRTAVI-DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEV 682 + +Y Y R + + + + YL+ +V+ + Sbjct: 155 LGLGW----IYNYAIRGELKTQELRFFKQCIYDLPLEYMIKNKYLTPPVKVDIPVTSYDF 210 Query: 683 INDTLEDDQDFEVADFNRGLVIPAFNR-AVCNELTNYLDPTGSQKTLVFCVTNAHADMVV 741 ++ E + + L + + + D Q ++F T HA ++ Sbjct: 211 -SELTEGGSAYTMTQLEEVLHQQRRLTPLIIKNIVDITDSYQRQGVMIFSSTVKHAQEIM 269 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVD 801 + L PQ + I+ T D+++D +I F + +V V +LTTG D Sbjct: 270 KTL--------PQGQARLILGETEDSERD-----QIINDFKNKAF-KYLVNVSVLTTGFD 315 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVV 861 + I LR S LY+Q+ GR RL + K + D + ++ S + Sbjct: 316 AAHVDVIAILRPTESISLYQQIIGRGLRL--DTGKKDCLVLDYTGMGHSIFSPEIGEKKT 373 Query: 862 VRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETID 921 V V +Q E + D EH R N D E Sbjct: 374 VSESVAVQVPCPECGFINDFWGILDDDGHIIEH--------FGRKCRGGNQNPDTYEFTP 425 Query: 922 KQVR 925 R Sbjct: 426 CGYR 429 >UniRef50_A4CPV8 Putative helicase n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CPV8_9FLAO Length = 496 Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats. Identities = 109/499 (21%), Positives = 178/499 (35%), Gaps = 90/499 (18%) Query: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 LR YQ+D + + AI +G + I+ + TG GKT T ++ + + +R+L L DR Sbjct: 2 LRSYQKDLISRLRLAIRQGNRRIIAVLPTGGGKTFTFTHIVKGAVD--KGRRVLILTDRI 59 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L QA GA + ++ I+ + P ++ A V++L +R + D Sbjct: 60 ELLRQAGGALQVYGLDP--------IEIKAGRKPYLGGVLYTAMVETLARRVKKKDYQHF 111 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF--DAVKIALTATPA 622 + + +++DEAH + ++ ++ +F DA + TATP Sbjct: 112 LQKMQVVIIDEAH----------------------MRSFDKLFPYFSADARVLGFTATPR 149 Query: 623 L-HTVQIFGEPVYRYTYRTAVIDGFLIDQDP---PIQIITRNAQEGVYLSKGEQVERISP 678 GE + V +L+D P + GV +GE Sbjct: 150 RMGRKNQLGEYYHH--LEVGVEIEYLVDNGFLAEPNYYGVESDLSGVRTVRGEY------ 201 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHAD 738 D E F RG+V N+ + +KTLVF A Sbjct: 202 ------DANEVADRFSKTKLYRGVV------------ENWKRISPGEKTLVFASNIA--- 240 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 +EL F ++ H +D D R R ++ V +LT Sbjct: 241 -SSQELITEFTQQGVDARHLDATV----SDLDRRNTLAWFDR----TPGAVLCNVGILTK 291 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMR 858 G D P I ++ R +S LY QM GR +R+ KTSF I D + +R Sbjct: 292 GFDQPDIRTVILYRATKSVPLYLQMCGRGSRMAH--GKTSFNILDFGGNIARHGFWHDVR 349 Query: 859 P--VVVRPKVELQTL---------VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII 907 P + V P + Q + T E +Q A+LQ + Sbjct: 350 PWSLEVMPMQDRQIGEAVLKNCKQCEAFIPTATVICPHCGYEDVKEKEEQQF-ARLQLLD 408 Query: 908 GLATFNRDRSETIDKQVRR 926 R T++ ++ Sbjct: 409 PRELRRRAEVMTMEGKIEM 427 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P08956 Type I restriction enzyme EcoKI R protein n=52 T... 1099 0.0 UniRef50_Q2P0A6 Type I restriction-modification system R subunit... 910 0.0 UniRef50_A4VH90 Type I restriction-modification system, R subuni... 907 0.0 UniRef50_C3MF99 Putative restriction endonuclease type I with R ... 903 0.0 UniRef50_B5W466 Type III restriction protein res subunit n=2 Tax... 881 0.0 UniRef50_B2J091 Type III restriction enzyme, res subunit n=1 Tax... 877 0.0 UniRef50_Q210K0 Type III restriction enzyme, res subunit n=4 Tax... 872 0.0 UniRef50_Q7UK96 Type I restriction enzyme EcoKI R protein n=3 Ta... 870 0.0 UniRef50_C4KDM8 Type III restriction protein res subunit n=4 Tax... 868 0.0 UniRef50_B6R0S4 Type III restriction enzyme, res subunit family ... 865 0.0 UniRef50_B2A6M4 Type III restriction protein res subunit n=5 Tax... 842 0.0 UniRef50_B0QS40 Type III restriction enzyme, res subunit n=1 Tax... 834 0.0 UniRef50_C6CZ63 Type III restriction protein res subunit n=3 Tax... 826 0.0 UniRef50_C7GDQ4 Type I restriction-modification system, R subuni... 811 0.0 UniRef50_A6TLK4 Type III restriction protein, res subunit n=3 Ta... 807 0.0 UniRef50_C6JN68 Type I restriction enzyme EcoKI subunit R n=4 Ta... 768 0.0 UniRef50_Q26D94 Type I restriction-modification system, R subuni... 749 0.0 UniRef50_A8YW16 Type I restriction modification system n=1 Tax=L... 745 0.0 UniRef50_C3WJB8 Type III restriction protein n=2 Tax=Fusobacteri... 737 0.0 UniRef50_C0XBA4 Type I restriction enzyme EcoKI subunit R n=6 Ta... 721 0.0 UniRef50_C7D879 Type I restriction enzyme, R protein n=1 Tax=Tha... 626 e-177 UniRef50_B0JHV9 Type III restriction enzyme res subunit n=4 Tax=... 624 e-177 UniRef50_Q21ZK0 Type III restriction enzyme, res subunit n=17 Ta... 624 e-177 UniRef50_Q1GLF8 Type I restriction-modification system restricti... 597 e-169 UniRef50_Q112D5 Type III restriction enzyme, res subunit n=1 Tax... 595 e-168 UniRef50_D0SUQ0 Predicted protein n=5 Tax=Moraxellaceae RepID=D0... 593 e-167 UniRef50_A6DQ75 Type I restriction-modification system R subunit... 588 e-166 UniRef50_C0E6A8 Putative uncharacterized protein n=1 Tax=Coryneb... 587 e-165 UniRef50_Q0AZK4 Type I restriction-modification system R subunit... 585 e-165 UniRef50_UPI000050FFCE type III restriction enzyme, res subunit ... 584 e-165 UniRef50_Q04L29 Type I restriction-modification system, R subuni... 578 e-163 UniRef50_C6LMG2 Type I restriction-modification system, R subuni... 577 e-163 UniRef50_Q043T1 Type I site-specific restriction-modification sy... 574 e-162 UniRef50_C8W942 Type III restriction protein res subunit n=5 Tax... 572 e-161 UniRef50_C4ZF20 Type I restriction-modification system R subunit... 570 e-160 UniRef50_B4RYU7 Type I site-specific restriction-modification sy... 566 e-159 UniRef50_UPI0001B4DA31 type III restriction enzyme, res subunit ... 565 e-159 UniRef50_D1XTB5 Type III restriction protein res subunit n=2 Tax... 562 e-158 UniRef50_Q0ATD1 Type III restriction enzyme, res subunit n=4 Tax... 557 e-156 UniRef50_C0VSE4 Type I site-specific deoxyribonuclease n=2 Tax=C... 554 e-156 UniRef50_UPI000196AC3A hypothetical protein CATMIT_00264 n=1 Tax... 552 e-155 UniRef50_C2CT05 Type I site-specific deoxyribonuclease n=3 Tax=C... 548 e-154 UniRef50_B7RYA9 Type III restriction enzyme, res subunit family ... 548 e-154 UniRef50_B1VEN8 Type I restriction-modification system, restrict... 547 e-153 UniRef50_A6W081 Type III restriction protein res subunit n=3 Tax... 545 e-153 UniRef50_B8ECU5 Type III restriction protein res subunit n=5 Tax... 543 e-152 UniRef50_C4LDI1 Type III restriction protein res subunit n=4 Tax... 531 e-149 UniRef50_A2TPW6 Type I restriction enzyme, R protein n=1 Tax=Dok... 528 e-148 UniRef50_A0KWT8 Type III restriction enzyme, res subunit n=7 Tax... 526 e-147 UniRef50_A5KNP7 Putative uncharacterized protein n=1 Tax=Ruminoc... 518 e-145 UniRef50_B3CDF9 Putative uncharacterized protein n=1 Tax=Bactero... 507 e-141 UniRef50_Q0W4T5 Type I restriction modification system, restrict... 507 e-141 UniRef50_A7I737 Type III restriction enzyme, res subunit n=5 Tax... 507 e-141 UniRef50_C6Q0A8 Type III restriction protein res subunit n=1 Tax... 505 e-141 UniRef50_A1BGJ2 Type III restriction enzyme, res subunit n=21 Ta... 500 e-139 UniRef50_B5YGZ8 Type I site-specific deoxyribonuclease n=6 Tax=B... 492 e-137 UniRef50_D1C5W5 Type III restriction protein res subunit n=1 Tax... 481 e-134 UniRef50_B8HN01 Type I site-specific deoxyribonuclease, HsdR fam... 465 e-129 UniRef50_Q7VGA4 Putative uncharacterized protein n=1 Tax=Helicob... 463 e-128 UniRef50_Q3ARI9 Type I site-specific deoxyribonuclease HsdR n=25... 455 e-126 UniRef50_B5GJX6 Type I site-specific deoxyribonuclease protein R... 448 e-124 UniRef50_A4T8B3 Type III restriction enzyme, res subunit n=6 Tax... 446 e-123 UniRef50_B9M295 Type III restriction protein res subunit n=2 Tax... 440 e-121 UniRef50_C1A4R0 Type I restriction-modification system restricti... 436 e-120 UniRef50_Q1IK45 Type I site-specific deoxyribonuclease, HsdR fam... 435 e-120 UniRef50_C2G1E6 HsdR family type I site-specific deoxyribonuclea... 434 e-120 UniRef50_A1W1E8 Type I restriction-modification enzyme, R subuni... 432 e-119 UniRef50_C2DZM9 Type I site-specific deoxyribonuclease n=8 Tax=L... 430 e-118 UniRef50_A8ZXE8 Type III restriction protein res subunit n=9 Tax... 428 e-118 UniRef50_B0URP6 Type III restriction protein res subunit n=7 Tax... 428 e-118 UniRef50_Q2FSK3 Type I site-specific deoxyribonuclease, HsdR fam... 428 e-118 UniRef50_Q1NY78 Type I site-specific deoxyribonuclease HsdR n=6 ... 426 e-117 UniRef50_B7JWD2 EcoEI R domain protein n=2 Tax=Bacteria RepID=B7... 425 e-117 UniRef50_C8PU19 Type I site-specific deoxyribonuclease, HsdR fam... 420 e-115 UniRef50_C6A4W6 Type III restriction enzyme, res subunit n=1 Tax... 420 e-115 UniRef50_A9NFS8 Type I site-specific restriction-modification sy... 420 e-115 UniRef50_C3QTD9 Type I restriction enzyme EcoKI R protein n=3 Ta... 419 e-115 UniRef50_B0S350 Type I restriction-modification system restricti... 419 e-115 UniRef50_A5VJW3 Type I site-specific deoxyribonuclease, HsdR fam... 418 e-115 UniRef50_D0LNE3 Type I site-specific deoxyribonuclease, HsdR fam... 417 e-114 UniRef50_B2GHN4 Type I restriction enzyme R protein n=3 Tax=Micr... 416 e-114 UniRef50_Q73J29 Type I restriction-modification system, R subuni... 413 e-113 UniRef50_A5TW30 Type I site-specific deoxyribonuclease restricti... 412 e-113 UniRef50_Q0AIL4 Type I site-specific deoxyribonuclease, HsdR fam... 409 e-112 UniRef50_B4E7C8 Type I restriction component of type I restricti... 409 e-112 UniRef50_C2QLA3 DEAD/DEAH box helicase:Helicase, C-terminal:Type... 409 e-112 UniRef50_B5EVZ8 Type I site-specific deoxyribonuclease n=3 Tax=P... 408 e-112 UniRef50_A3CUH7 Type III restriction enzyme, res subunit n=3 Tax... 408 e-112 UniRef50_A1WM89 Type I site-specific deoxyribonuclease, HsdR fam... 408 e-112 UniRef50_Q3ADU9 Type I restriction-modification system, R subuni... 407 e-111 UniRef50_B5ENW6 Type I site-specific deoxyribonuclease, HsdR fam... 406 e-111 UniRef50_Q2S3K0 HsdR n=1 Tax=Salinibacter ruber DSM 13855 RepID=... 406 e-111 UniRef50_D0B7P6 HsdR protein n=35 Tax=Brucella RepID=D0B7P6_BRUME 405 e-111 UniRef50_A5UR94 Type III restriction enzyme, res subunit n=5 Tax... 405 e-111 UniRef50_A6L7V1 Type I restriction enzyme EcoKI R protein n=11 T... 405 e-111 UniRef50_A4CWB4 Type I site-specific deoxyribonuclease HsdR n=3 ... 404 e-110 UniRef50_Q3JA72 Type I site-specific deoxyribonuclease HsdR n=28... 402 e-110 UniRef50_C9LYN5 Type I restriction-modification system R subunit... 399 e-109 UniRef50_Q07736 Type I restriction enzyme EcoAI R protein n=63 T... 399 e-109 UniRef50_A4FZ35 Type III restriction enzyme, res subunit n=1 Tax... 397 e-108 UniRef50_Q0W5N4 Type I restriction modification enzyme, restrict... 396 e-108 UniRef50_C6Q568 Type I site-specific deoxyribonuclease, HsdR fam... 394 e-108 UniRef50_B8EFY3 Type I site-specific deoxyribonuclease, HsdR fam... 394 e-107 UniRef50_C2HHS1 Possible type I site-specific deoxyribonuclease ... 393 e-107 UniRef50_B1Y673 EcoEI R domain protein n=12 Tax=Bacteria RepID=B... 393 e-107 UniRef50_C0GS48 Putative uncharacterized protein n=1 Tax=Desulfo... 392 e-107 UniRef50_B8D1X7 Type I site-specific deoxyribonuclease, HsdR fam... 392 e-107 UniRef50_B9MGJ1 EcoEI R domain protein n=4 Tax=Proteobacteria Re... 391 e-106 UniRef50_D2LA91 Type I site-specific deoxyribonuclease n=1 Tax=D... 391 e-106 UniRef50_Q0TN04 Type I restriction-modification system, R subuni... 390 e-106 UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax... 389 e-106 UniRef50_B8CZR6 EcoEI R domain protein n=5 Tax=Firmicutes RepID=... 389 e-106 UniRef50_UPI0001C42655 hypothetical protein BpOF4_03725 n=1 Tax=... 389 e-106 UniRef50_C1P7N7 Type I site-specific deoxyribonuclease, HsdR fam... 388 e-106 UniRef50_Q7MPU7 Type I site-specific restriction-modification sy... 387 e-106 UniRef50_C5DAW5 Type I site-specific deoxyribonuclease, HsdR fam... 387 e-105 UniRef50_B8HE51 Type I site-specific deoxyribonuclease, HsdR fam... 387 e-105 UniRef50_O05052 Putative type I restriction enzyme HindVIIP R pr... 386 e-105 UniRef50_C6Z257 Type I site-specific deoxyribonuclease n=2 Tax=B... 386 e-105 UniRef50_Q3J741 Type I site-specific deoxyribonuclease HsdR n=3 ... 384 e-104 UniRef50_C0QCH5 HsdR2 n=1 Tax=Desulfobacterium autotrophicum HRM... 384 e-104 UniRef50_D1W5U0 DEAD/DEAH box helicase n=1 Tax=Prevotella buccal... 384 e-104 UniRef50_C8NQU2 HsdR family type I site-specific deoxyribonuclea... 382 e-104 UniRef50_B8EIX1 Putative uncharacterized protein n=1 Tax=Methylo... 382 e-104 UniRef50_A6EUB1 DEAD/DEAH box helicase n=3 Tax=Bacteria RepID=A6... 381 e-103 UniRef50_B3H2F8 Type I restriction enzyme R protein n=2 Tax=Acti... 380 e-103 UniRef50_C7P6A6 Type I site-specific deoxyribonuclease n=1 Tax=M... 380 e-103 UniRef50_Q6ZE43 Type I site-specific deoxyribonuclease chain R n... 380 e-103 UniRef50_C6BRN4 Type I site-specific deoxyribonuclease n=2 Tax=P... 379 e-103 UniRef50_C4Z8T4 Type I site-specific deoxyribonuclease, HsdR fam... 379 e-103 UniRef50_Q2B8V1 DEAD/DEAH box helicase:Helicase, C-terminal:Type... 378 e-103 UniRef50_C6MBL3 Type III restriction protein res subunit n=3 Tax... 378 e-103 UniRef50_Q47281 Type I restriction enzyme EcoEI R protein n=45 T... 377 e-102 UniRef50_B7R239 Type I restriction enzyme n=1 Tax=Thermococcus s... 377 e-102 UniRef50_B7GLJ0 Type I site-specific restriction-modification sy... 377 e-102 UniRef50_A3EUI1 Putative type I restriction enzyme, HsdR family ... 377 e-102 UniRef50_B5IRS5 Type I site-specific deoxyribonuclease, HsdR fam... 376 e-102 UniRef50_B5FA21 Type I restriction-modification system, R subuni... 376 e-102 UniRef50_B6ENI5 Restriction enzyme n=1 Tax=Aliivibrio salmonicid... 376 e-102 UniRef50_Q167L8 Type I restriction enzyme subunit, putative n=11... 376 e-102 UniRef50_A3DMK4 Type I site-specific deoxyribonuclease, HsdR fam... 375 e-102 UniRef50_D2NT13 Type I site-specific restriction-modification sy... 375 e-102 UniRef50_O27023 Type I restriction enzyme n=1 Tax=Methanothermob... 374 e-102 UniRef50_A1SRA3 Type III restriction enzyme, res subunit n=4 Tax... 372 e-101 UniRef50_D0KYE6 Type I site-specific deoxyribonuclease n=2 Tax=P... 372 e-101 UniRef50_Q4A127 Type-1 restriction enzyme R protein n=77 Tax=cel... 372 e-101 UniRef50_A1RES7 Type I site-specific deoxyribonuclease, HsdR fam... 371 e-101 UniRef50_Q60295 Putative type-1 restriction enzyme MjaXP R prote... 371 e-100 UniRef50_A1WBU3 Type I site-specific deoxyribonuclease, HsdR fam... 370 e-100 UniRef50_C9RRX7 Type I site-specific deoxyribonuclease n=1 Tax=F... 370 e-100 UniRef50_C9MRT3 Type I restriction-modification system, R subuni... 369 e-100 UniRef50_C5DB09 Type III restriction protein res subunit n=7 Tax... 369 e-100 UniRef50_B3EQD9 Type I site-specific deoxyribonuclease, HsdR fam... 369 e-100 UniRef50_C9KLJ8 Type I restriction-modification system, R subuni... 368 e-100 UniRef50_A0Q5T7 Type I restriction-modification system, subunit ... 368 e-100 UniRef50_Q48QA1 Type I restriction-modification system restricti... 367 1e-99 UniRef50_A0Q726 Type I restriction-modification system, subunit ... 367 1e-99 UniRef50_C4XDR7 Putative uncharacterized protein n=1 Tax=Mycopla... 367 1e-99 UniRef50_B8GAW6 Type I site-specific deoxyribonuclease, HsdR fam... 367 1e-99 UniRef50_UPI0001C37440 type I restriction-modification system, R... 367 1e-99 UniRef50_A1HQI3 Type I site-specific deoxyribonuclease, HsdR fam... 366 2e-99 UniRef50_A6L6I5 Type I restriction enzyme EcoR124II R protein n=... 366 3e-99 UniRef50_B7MMN7 Type I restriction-modification system (HsdR-lik... 366 4e-99 UniRef50_UPI000185CC48 type I restriction-modification system, R... 366 4e-99 UniRef50_A4VG54 Type I restriction-modification system endonucle... 366 4e-99 UniRef50_B5V5B2 Type I RM system R subunit n=2 Tax=Bacillus cere... 365 6e-99 UniRef50_C7NM10 Type I restriction enzyme R protein n=1 Tax=Kyto... 365 6e-99 UniRef50_Q5NWL0 Type I restriction-modification system (Restrict... 364 9e-99 UniRef50_C3GR20 Type III restriction protein res subunit n=1 Tax... 364 1e-98 UniRef50_B6ALE7 Putative DEAD/DEAH box helicase n=1 Tax=Leptospi... 364 1e-98 UniRef50_UPI0001BC3736 type I restriction-modification system, R... 364 2e-98 UniRef50_B9TB59 Putative uncharacterized protein n=1 Tax=Ricinus... 363 2e-98 UniRef50_Q1CT24 Type I restriction enzyme R protein n=12 Tax=Hel... 363 2e-98 UniRef50_C2ZGZ1 Type-1 restriction enzyme R protein n=7 Tax=Bact... 363 3e-98 UniRef50_A8ZYK5 Type I site-specific deoxyribonuclease, HsdR fam... 363 3e-98 UniRef50_Q30S05 Type I site-specific deoxyribonuclease HsdR n=5 ... 363 3e-98 UniRef50_B5J7A5 Type I site-specific deoxyribonuclease, HsdR fam... 362 5e-98 UniRef50_Q30XD1 DEAD/DEAH box helicase-like n=10 Tax=Proteobacte... 362 5e-98 UniRef50_Q4HQY2 Type I restriction enzyme R protein (HsdR) n=2 T... 362 5e-98 UniRef50_D1YNY8 Type I restriction enzyme HsdR protein N-termina... 362 5e-98 UniRef50_C5C4M4 Type I site-specific deoxyribonuclease, HsdR fam... 362 6e-98 UniRef50_UPI000197676D type I site-specific deoxyribonuclease Hs... 361 1e-97 UniRef50_A5WF29 Type III restriction enzyme, res subunit n=5 Tax... 361 1e-97 UniRef50_C0N6E9 Type III restriction enzyme, res subunit family ... 361 1e-97 UniRef50_C6VT73 Type I site-specific deoxyribonuclease, HsdR fam... 361 2e-97 UniRef50_Q47GH2 Type I site-specific deoxyribonuclease HsdR n=5 ... 360 2e-97 UniRef50_C7WVK1 Type III restriction enzyme n=10 Tax=Firmicutes ... 359 3e-97 UniRef50_A7HVM3 Type I site-specific deoxyribonuclease, HsdR fam... 359 3e-97 UniRef50_C0QY63 Type I site-specific deoxyribonuclease, HsdR fam... 359 3e-97 UniRef50_C4FJW2 Type I restriction-modification system, R subuni... 359 4e-97 UniRef50_Q07ZW9 Type III restriction enzyme, res subunit n=10 Ta... 359 5e-97 UniRef50_C1SJS9 Helicase, type I site-specific restriction-modif... 359 5e-97 UniRef50_B2IMB0 Type I restriction-modification system, R subuni... 359 6e-97 UniRef50_D1VV13 Type I restriction enzyme, HsdR subunit n=8 Tax=... 358 6e-97 UniRef50_C3NN84 Type III restriction protein res subunit n=1 Tax... 358 7e-97 UniRef50_Q11QY6 Restriction enzyme type I helicase subunit; type... 358 7e-97 UniRef50_A6P0G5 Putative uncharacterized protein n=2 Tax=Bacteri... 357 1e-96 UniRef50_A5WEH4 Type I site-specific deoxyribonuclease, HsdR fam... 357 1e-96 UniRef50_C7QLU3 Type I site-specific deoxyribonuclease, HsdR fam... 357 2e-96 UniRef50_C2CJE8 Type I site-specific deoxyribonuclease n=5 Tax=F... 357 2e-96 UniRef50_A3J6X1 Type I restriction-modification system restricti... 357 2e-96 UniRef50_A6UXD8 Type I site-specific restriction-modification sy... 356 2e-96 UniRef50_D0S8M3 Type I site-specific restriction-modification en... 356 3e-96 UniRef50_A9FYJ9 Type I restriction-modification system restricti... 356 3e-96 UniRef50_C5VKZ0 Type I site-specific deoxyribonuclease, HsdR fam... 356 3e-96 UniRef50_C3XMW2 Type I restriction-modification enzyme n=3 Tax=H... 356 4e-96 UniRef50_D2MXN8 Type I site-specific deoxyribonuclease chain R n... 356 5e-96 UniRef50_A9BH04 Type I site-specific deoxyribonuclease, HsdR fam... 355 6e-96 UniRef50_Q4HNM6 Type I restriction-modification system, R subuni... 355 6e-96 UniRef50_A9DFK8 Type I restriction-modification system, R subuni... 355 7e-96 UniRef50_C5BX90 Type I site-specific deoxyribonuclease, HsdR fam... 355 8e-96 UniRef50_B5H9V0 Type III restriction enzyme n=1 Tax=Streptomyces... 354 8e-96 UniRef50_A4CI89 HsdR n=2 Tax=Flavobacteriaceae RepID=A4CI89_9FLAO 354 2e-95 UniRef50_A8ZY57 Type III restriction protein res subunit n=1 Tax... 353 2e-95 UniRef50_C3JM62 Dead/deah box helicase n=1 Tax=Rhodococcus eryth... 353 2e-95 UniRef50_A5GB17 Type III restriction enzyme, res subunit n=1 Tax... 352 5e-95 UniRef50_Q879X0 Type I restriction-modification system endonucle... 351 8e-95 UniRef50_C8VZC5 Type I site-specific deoxyribonuclease, HsdR fam... 351 1e-94 UniRef50_B5ZAL0 Type I site-specific deoxyribonuclease, HsdR fam... 350 2e-94 UniRef50_Q3SFH2 DEAD/DEAH box helicase n=11 Tax=Bacteria RepID=Q... 350 2e-94 UniRef50_Q3ZWI1 Restriction enzymes type I helicase subunit n=1 ... 350 2e-94 UniRef50_Q0A7Q4 Type III restriction enzyme, res subunit n=9 Tax... 350 3e-94 UniRef50_Q0AUQ7 Type I restriction-modification system, R subuni... 349 4e-94 UniRef50_A5P9B2 Type I restriction-modification system, R subuni... 349 5e-94 UniRef50_C1YVI0 Type I site-specific deoxyribonuclease, HsdR fam... 349 6e-94 UniRef50_C7QRQ2 Type III restriction protein res subunit n=4 Tax... 348 6e-94 UniRef50_B3ENS5 Type III restriction protein res subunit n=1 Tax... 348 7e-94 UniRef50_C3NPG6 Type I site-specific deoxyribonuclease HsdR fami... 348 8e-94 UniRef50_B3R3C4 Type I restriction-modification deoxyribonucleas... 348 1e-93 UniRef50_C3X5U1 Type I site-specific deoxyribonuclease n=1 Tax=O... 347 1e-93 UniRef50_A8ZS37 Type I site-specific deoxyribonuclease, HsdR fam... 347 1e-93 UniRef50_A8TCZ2 Type III restriction protein res subunit n=3 Tax... 347 2e-93 UniRef50_C0CKP4 Putative uncharacterized protein n=2 Tax=Bacteri... 347 2e-93 UniRef50_Q1CR89 Type I restriction enzyme R protein n=10 Tax=Hel... 346 3e-93 UniRef50_UPI000038E017 HsdR family type I site-specific deoxyrib... 346 4e-93 UniRef50_D1BQJ4 Type I site-specific deoxyribonuclease, HsdR fam... 346 4e-93 UniRef50_A8UNU3 DEAD/DEAH box helicase-like protein n=1 Tax=Flav... 345 4e-93 UniRef50_Q11PS8 Type I restriction-modification system R subunit... 345 4e-93 UniRef50_O28565 Type I restriction-modification enzyme, R subuni... 345 4e-93 UniRef50_B3PQK7 Probable type I restriction-modification system ... 345 5e-93 UniRef50_Q6MH63 Type I restriction-modification system restricti... 345 6e-93 UniRef50_B0VF77 DEAD/DEAH box helicase n=1 Tax=Candidatus Cloaca... 345 6e-93 UniRef50_A6LY59 Type III restriction protein, res subunit n=2 Ta... 345 8e-93 UniRef50_C3WN61 Type I restriction-modification system restricti... 344 1e-92 UniRef50_A9DR70 DEAD/DEAH box helicase-like protein n=1 Tax=Kord... 343 2e-92 UniRef50_A4XPS1 Type I site-specific deoxyribonuclease, HsdR fam... 343 3e-92 UniRef50_Q0RV86 Type I site-specific modification system restric... 343 3e-92 UniRef50_C1FPX7 Type III restriction protein res subunit n=1 Tax... 342 4e-92 Sequences not found previously or not previously below threshold: UniRef50_B9MJI2 Type I site-specific deoxyribonuclease, HsdR fam... 394 e-107 UniRef50_C6DAA4 Type I site-specific deoxyribonuclease, HsdR fam... 345 5e-93 >UniRef50_P08956 Type I restriction enzyme EcoKI R protein n=52 Tax=Gammaproteobacteria RepID=T1RK_ECOLI Length = 1170 Score = 1099 bits (2841), Expect = 0.0, Method: Composition-based stats. Identities = 1170/1170 (100%), Positives = 1170/1170 (100%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE 60 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE Sbjct: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE 60 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR Sbjct: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG Sbjct: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL Sbjct: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV Sbjct: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE Sbjct: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL Sbjct: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT Sbjct: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED 540 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED Sbjct: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED 540 Query: 541 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV Sbjct: 541 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 Query: 601 SAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 SAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN Sbjct: 601 SAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 Query: 661 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD 720 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD Sbjct: 661 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD 720 Query: 721 PTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITR 780 PTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITR Sbjct: 721 PTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITR 780 Query: 781 FNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK 840 FNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK Sbjct: 781 FNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK 840 Query: 841 IFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLV 900 IFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLV Sbjct: 841 IFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLV 900 Query: 901 AKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNK 960 AKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNK Sbjct: 901 AKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNK 960 Query: 961 LPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPN 1020 LPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPN Sbjct: 961 LPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPN 1020 Query: 1021 AQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRA 1080 AQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRA Sbjct: 1021 AQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRA 1080 Query: 1081 AVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRR 1140 AVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRR Sbjct: 1081 AVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRR 1140 Query: 1141 GGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 GGKAMLQRTFDDNLDTLLGKFSDYIWDELA Sbjct: 1141 GGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 >UniRef50_Q2P0A6 Type I restriction-modification system R subunit n=10 Tax=Proteobacteria RepID=Q2P0A6_XANOM Length = 1183 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 461/1179 (39%), Positives = 683/1179 (57%), Gaps = 39/1179 (3%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE--NQ 62 SNF FL+ + + +A AE + DPNTTLIK+R F EA A+ L I + Q Sbjct: 31 SNFSFLQEHDPVFFKLASMAEQVFASDPNTTLIKLRQFAEALAQDLAGRAGILHDQRTTQ 90 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 DL+ +L + +D I +FH LR GN+A H + +A L++ LAVWY+R Sbjct: 91 ADLIYQLARELRLDRRIQELFHVLRVEGNKATHGFTTQHREAMDGLKVARDLAVWYHRAF 150 Query: 123 TKDY-DFPVPVFVLPERGENLY---HQEVLTLKQQLE--QQVREKAQTQAEVEAQQQKLV 176 ++ DF FV P+ EV LK +L+ +Q +++Q AE+++ + KL Sbjct: 151 GRNAADFKAGAFVPPKDPAAPLRDVQAEVHRLKAELDTARQQHDQSQALAELKSSEAKLN 210 Query: 177 ALNGYIAILEGKQQETEA-QTQARLAALEAQLAEKNAELAK-QTEQERKAYHKEITDQAI 234 A +E + Q A Q + L L ++ A L + T ++ Q Sbjct: 211 AELAEAMDIEARAQSALAVQREQELHRLRQDFEQRIASLQQPDTARQAATQQVADATQQA 270 Query: 235 KRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 T +LSE+ +R LID QLR+AGW+ADS L +KG RPE G N AIAEWPT Sbjct: 271 SNTFDLSEDLTRILIDQQLREAGWEADSLDLTHAKGTRPEKGRNLAIAEWPTKVPRAN-- 328 Query: 295 GFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 ADYVLF GL P+AVVEAKR I++ R+ ++ RY++ + Sbjct: 329 --ADYVLFAGLTPVAVVEAKRKQINIADRIPQAERYARD-----------FAMRGELAPA 375 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 + F++P ++ NGR + + +SGIW+RD+R N+ + L ++H Sbjct: 376 YPATTAIAGWADGQGGHFQVPLAFACNGRPFVKQLAEQSGIWFRDLRSPANLRRPLQKFH 435 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 PE++ ++L + + + A GM+ L LR YQ+ A++AVE A+ G + LLAMATG Sbjct: 436 TPEDIADLLTRDRDQAERDLAQE-GMAYLNLRDYQQRAIQAVEGALASGARNCLLAMATG 494 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDIKGL 533 TGKTRT I +++RL++++RF RILFLVDR +LG QA +D ++ + T I+++ GL Sbjct: 495 TGKTRTMIGLIYRLLKAERFHRILFLVDRSALGTQATETMQDMQLEQNQTLAQIYNLDGL 554 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 D D T++ VATVQ++V+R QSD+P P+ +DCIVVDEAHRGY LD+E T+GEL Sbjct: 555 DDTRTADETRVQVATVQAMVRRIFQSDDPPPIGTFDCIVVDEAHRGYTLDQEMTDGELAV 614 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPP 653 R Y+S YRR+LD+FDA +I LTATPA HT +IFG+P+Y Y+YR AV D +LID +PP Sbjct: 615 RDHAQYLSQYRRVLDYFDACRIGLTATPAKHTTEIFGKPIYTYSYREAVADDWLIDHEPP 674 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC 712 I+ T + G++ +GE+V I+ Q G+V LED+ DF + FNR ++ F+R VC Sbjct: 675 IRYTTALGKNGIHFDRGERVSVINTQTGDVDTADLEDELDFNIESFNRRVITANFDRVVC 734 Query: 713 NELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDA-IIKITGDADKDA 771 +L LDP G +KTL+FCV HA+ V +L AFK+ + + A + ITG +DK Sbjct: 735 EQLAIELDPDGEEKTLIFCVNQPHAERVKHQLDEAFKQVHGNYYNQASVAVITGKSDK-- 792 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 V +I + ER P I +TVDLLTTG+D+P I N+VF+R+VRSRILYEQMKGRATR C Sbjct: 793 --VDQLIRNYKNERFPTIAITVDLLTTGIDVPRIANLVFMRRVRSRILYEQMKGRATRRC 850 Query: 832 PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSF 891 ++ KT F+IFD VD+Y+ LE VDTMRP+V P + ++ LV+E+ +Y ++G S Sbjct: 851 DDIGKTVFRIFDPVDLYAALEDVDTMRPLVKDPNISIEQLVHELGQQRSYDAPGSNGGSH 910 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP 951 A+ + +QL ++ R++ + R+E +L EL + A GV + L + G Sbjct: 911 ADDALDQLSQRIMRVLR---KAQHRAEQRPDLRDKLSEL-ETAWGVAPAVLHTHLHKLGA 966 Query: 952 HWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAF 1011 +A + P + +L + + + P+ + D ++ YG + P D+L++F Sbjct: 967 RNAASFLREHPRLVEQLADVGVLLGT-DRYPVISEHTDTLLERAQNYGVNEAPADYLDSF 1025 Query: 1012 DSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAA 1071 ++ ++ N AL ++NRPRDLTR L E++ D+ + E+ LR AW+++ +++AA Sbjct: 1026 NAFIREQINQSAALSVIVNRPRDLTRAQLREVRLLLDQHGYSEAHLRGAWRDSTQQEVAA 1085 Query: 1072 RLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDV 1131 +IG+IRRAA+G+AL PFE+RVD A+ I + W+ Q WL RLAQ L +VVLD D Sbjct: 1086 SIIGYIRRAALGEALVPFEQRVDKAMQGIYAQRSWTPVQRRWLKRLAQQLIHEVVLDRDT 1145 Query: 1132 FKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 + NF GG L R D LD +LG +++WD+ Sbjct: 1146 VQR-NFSGDGGALQLDRLLDGRLDQILGDLGEHLWDQTG 1183 >UniRef50_A4VH90 Type I restriction-modification system, R subunit n=2 Tax=Gammaproteobacteria RepID=A4VH90_PSEU5 Length = 1157 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 471/1183 (39%), Positives = 675/1183 (57%), Gaps = 39/1183 (3%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE 60 M SNF FL+ + +A AE + DPNTTLIK+R GEA A+ L I Sbjct: 1 MAVSSNFAFLQEHDPVFLQLANTAEQVFASDPNTTLIKLRQLGEALAQDLASRAGIEFDA 60 Query: 61 N-QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYY 119 Q DLL +L + +D NI S+FH LR GN+A HE+ +A L++ LA+WY+ Sbjct: 61 TTQSDLLYKLSREIQLDQNIRSLFHTLRVEGNRATHEFRTQHREAMDGLKVARALAIWYH 120 Query: 120 RLVTKD-YDFPVPVFVLPERGENLYH---QEVLTLKQQLEQQVREKAQTQAEVEAQQ--- 172 + K+ + F FV P H ++ LK QL + +E Q E + Sbjct: 121 QSFGKNAHAFKPGPFVTPTDPSAPLHDLKNQIERLKTQLSESSQELEDNQQLAELHKREA 180 Query: 173 QKLVALNGYIAILEGKQQETEAQTQARLAALE-AQLAEKNAELAKQTEQERKAYHKEITD 231 ++ L + ++ A+ +A L L A + Q + A Sbjct: 181 EEYAVLAEQMDAESRGHKQLAAEHEAALHKLRTEHERRIKALQLQLLTQPQAAQQVMHRT 240 Query: 232 QAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDET 291 + +LSE+ +R LID QL AGW+ADS L +SKGARPE G NKAIAEWPT + Sbjct: 241 MQATSSFDLSEDLTRILIDQQLIDAGWEADSLDLTYSKGARPEKGKNKAIAEWPTSSPKA 300 Query: 292 GNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDE 351 ADYVLF GL PIA+VEAKR I++ R+ ++ RY++ F+ + + Sbjct: 301 ----CADYVLFAGLTPIAIVEAKRKRINIADRIPQAERYAREFNLSVEHQQPSLLAGQTQ 356 Query: 352 VHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALP 411 F++PF ++ NGR + + +SG W+RD+R N + L Sbjct: 357 SWSDGQ-----------GGHFRVPFAFACNGRPFIKQLAEQSGTWFRDLRSPANTRRPLQ 405 Query: 412 EWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 ++H+P++LL++L G + L LR YQE AV+ VE+A+ Q++ LLAM Sbjct: 406 DFHKPDDLLDLLKRSQTDAEAKLKAE-GFTYLKLRDYQEKAVQTVEQALANNQRDCLLAM 464 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDI 530 ATGTGKTRT I +M+R ++++RFKRILFLVDR +LG+QA+ +F DT + + T I+DI Sbjct: 465 ATGTGKTRTIIGLMYRFLKAERFKRILFLVDRSALGQQAIDSFNDTTLEQNHTLAQIYDI 524 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 K L D E T++ VATVQ++V R +SD P PV +DCI+VDEAHRGY LD+E TEGE Sbjct: 525 KELGDMAAEAETRVQVATVQAMVSRIFRSDTPPPVGEFDCIIVDEAHRGYTLDQEMTEGE 584 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQ 650 L R Y+S YRR+LDHFDA +I LTATPA HT +IFG+PV+ Y+YR AV D +L+D Sbjct: 585 LAVRDHSQYLSQYRRVLDHFDACRIGLTATPAKHTSEIFGKPVFTYSYREAVADDWLVDH 644 Query: 651 DPPIQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 +PPI+ T+ +Q G+ KGE V I+ Q GEV LED+ F + FNR ++ PAF++ Sbjct: 645 EPPIRYETQLSQHGIRFEKGESVSVINTQTGEVDVAELEDELTFNIESFNRRVITPAFDK 704 Query: 710 AVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ-LEHDAIIKITGDAD 768 +C+EL LDP G +KT++FCV AHA+ V L AFK Y + A+ ITG +D Sbjct: 705 VICDELAKELDPFGEEKTMIFCVNQAHAERVKNLLDEAFKTAYGEQYNEAAVRIITGQSD 764 Query: 769 KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 K V+ +I R+ E PNI +TVDLLTTG+D+P ICN+VF+R+VRSRILYEQMKGRAT Sbjct: 765 K----VEQLIRRYKNEPNPNIAITVDLLTTGIDVPKICNLVFMRRVRSRILYEQMKGRAT 820 Query: 829 RLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITE-AD 887 R C ++ KT F+I+D VD+Y++LE+VDTM+P+V P + L+ LV+E+ ++ D Sbjct: 821 RRCDDIGKTVFRIYDPVDLYASLEAVDTMKPLVKNPNISLEQLVSELASGASHDAPGSQD 880 Query: 888 GRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLR 947 S A +QL ++ RI+ + ++E ++LDEL QDA GV + L Sbjct: 881 DSSHAHDVLDQLSQRVMRILR---KAQHKAENKPSLKQKLDEL-QDAWGVEPAKLHTHLH 936 Query: 948 EKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDF 1007 E GP +A + I +L + + + + P+ DE++ + YG P D+ Sbjct: 937 ELGPQQAANFVRQHSQLINQLAAVSALLGS-ENYPLISTHSDELMVREQNYGQNQKPADY 995 Query: 1008 LEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNE 1067 LE+F + + N AL V+NRP+DLTR+ L E++ D+ F E+SL+ AW+ N+ Sbjct: 996 LESFHEFIHKQLNQSAALGVVVNRPKDLTREQLREVRLLLDQHGFSEASLKSAWRNQTNQ 1055 Query: 1068 DIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVL 1127 +IAA +IG+IR+AA+G+AL PF++RV A+ +I W+ Q WL+RLA+ L +VV+ Sbjct: 1056 EIAASIIGYIRQAAIGEALLPFDQRVAQAMQKIYALQPWTPVQRKWLERLAKQLVHEVVI 1115 Query: 1128 DDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 D F GG L R NLD +L +D +W Sbjct: 1116 DPQQVNDA-FRNDGGLKALDRNLGGNLDRVLEALNDNLWSAAG 1157 >UniRef50_C3MF99 Putative restriction endonuclease type I with R subunit / type III with Res subunit n=1 Tax=Rhizobium sp. NGR234 RepID=C3MF99_RHISN Length = 1140 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 442/1181 (37%), Positives = 650/1181 (55%), Gaps = 67/1181 (5%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPP---CE 60 NF+ LK ++ + AE + DD NT+LIK R FGE K + L + E Sbjct: 6 SVNFDHLKSLSPELQRLGTLAERFFADDANTSLIKSRQFGEYMVKEIAALSGVYDPAARE 65 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 HDLLR L + + +FH +R+ GN+A H +A L+ L VWY R Sbjct: 66 TTHDLLRRLATQQILPREVADIFHAVRKSGNEATHNLAGSPTEALAALKFCRALGVWYRR 125 Query: 121 LVTKDYDFPVPVFVLPERGENL---YHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 +D +F FV P+ ++ E+ TL++Q+ + + A + + + A Sbjct: 126 TYGRDPNFRPGPFVPPKASADIDQATQAELATLRRQVREAEAQLAAAHSSADELAKARAA 185 Query: 178 LNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQ--AIK 235 + +A QT + A +A+L+ K AEL K + + + E Sbjct: 186 AD-ELARQAAADNAVWEQTAVEMEANQAELSRKLAELQKAAQAQPQQLQMEFKQAGLQAA 244 Query: 236 RTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG 295 L L E ++R LIDAQL AGW+ADS L + GARPE G N AIAEWP G Sbjct: 245 SRLELDERQTRRLIDAQLVDAGWEADSDRLSYQLGARPEEGRNLAIAEWPAAG------G 298 Query: 296 FADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADY LF+GL + ++EAKR ++DVP+ L ++ RY++ Sbjct: 299 RADYGLFIGLTCVGIIEAKRESVDVPSTLQQAERYARTI-----------------ALPP 341 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 + + F++PF ++TNGR + +TKSGIW+ D+R N + L W Sbjct: 342 ENSHPGGLWNHGLADPFRVPFVFTTNGRPFVRQWQTKSGIWFCDLRRDTNHPRPLTTWFS 401 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 P++LL++L ++ Q A++ + +R YQEDA+ A+E A+V GQ++IL++MATGT Sbjct: 402 PKDLLDILATDLDAAAQGLAEDSFG-KGRMRPYQEDAIAAIENAVVAGQRDILVSMATGT 460 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDIKGLT 534 GKTRT+IA+M+RL++ +RF+RILFLVDR++LG+Q A E T I G F I+ + GL Sbjct: 461 GKTRTSIALMYRLLKHKRFRRILFLVDRKALGKQTSDALETTEIEGMLNFAQIYKVAGLE 520 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDEP---MPVARYDCIVVDEAHRGYILDKEQTEGEL 591 K PED ++ VATVQSL+ R L +P +DCI+VDEAHRGY LD E E ++ Sbjct: 521 KKVPEDEDQVQVATVQSLIARILNEPDPAKRPTPGTFDCIIVDEAHRGYTLDAELRESDV 580 Query: 592 QFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQD 651 FR+ DY SAYR+ILD+FDAVK+ALTATPALHT +IFG PV+ Y YR AV++G+L D Sbjct: 581 GFRNLDDYQSAYRQILDYFDAVKVALTATPALHTREIFGHPVFHYGYRQAVVEGYLNDHL 640 Query: 652 PPIQIITRNAQEGVYLSKGEQVERISP---QGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 PP +I T ++ G++ GE+VE I Q ++ E D++VADFN+ + AFN Sbjct: 641 PPKRITTALSEAGIHFEGGEEVEIIDRTTGQIDLFELPDEVSLDYDVADFNKRVYSEAFN 700 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQL--EHDAIIKITGD 766 R VC + + P+ KTL+F +AHAD +V L +++Y H ++KITG+ Sbjct: 701 RMVCRAIATEIPPSKPGKTLIFAARDAHADDLVRLLVEELQEEYGNDAVPHGMVMKITGN 760 Query: 767 ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 DK +I +F + P VVTVDLLTTG+D+P+ICN+VF+R+V+SRILY+QM GR Sbjct: 761 VDK----ADDLILKFKNDPHPKYVVTVDLLTTGIDVPTICNLVFVRRVKSRILYDQMIGR 816 Query: 827 ATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEA 886 ATRLCPE+ K F+IFD VD+Y+ L+ + MRPVVV+P + L LV ++ +ET E Sbjct: 817 ATRLCPEIGKEHFRIFDAVDLYAELQEMTDMRPVVVKPDISLGQLVTDLDKAET----EE 872 Query: 887 DGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRL 946 D A ++ A R+ + +R G RL Sbjct: 873 DKSWVAGQVIVRMRAMANRMDAETRESFERHT-----------------GETPENAVQRL 915 Query: 947 REKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQD 1006 + P I LE+ + ND + +DE++ ++ ++G TP+D Sbjct: 916 ATLSGSELQDWLKSHPRVIELLERRPIRTGSGNDGVVISTHEDELLRIEEIFGKNTTPED 975 Query: 1007 FLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRN 1066 ++ F+ ++ + N PAL AV RPRDLTRK L EL D +++ E+ LR A+ + RN Sbjct: 976 YITGFERFIRENMNQVPALIAVTQRPRDLTRKELSELAGLLDEKNYSEAMLRAAYGKVRN 1035 Query: 1067 EDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVV 1126 DIAA +IG +R+AA+GD L P+ RV++A+ +I+ W+ +Q WL R+ +ALK+K V Sbjct: 1036 ADIAAHIIGFVRQAAIGDPLIPYATRVENAIGKIEASRPWTQKQKEWLRRIGRALKDKPV 1095 Query: 1127 LDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWD 1167 D + G F +GG + + FD LD +L F++ IW Sbjct: 1096 ADPTLLDQGVFADKGGFKRISQEFDGELDDVLHAFNEAIWA 1136 >UniRef50_B5W466 Type III restriction protein res subunit n=2 Tax=Bacteria RepID=B5W466_SPIMA Length = 1128 Score = 881 bits (2277), Expect = 0.0, Method: Composition-based stats. Identities = 452/1181 (38%), Positives = 654/1181 (55%), Gaps = 69/1181 (5%) Query: 3 NKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLN--IPPCE 60 +NFEFL+ + + AE + DDP T LIK+R F E A+ + E Sbjct: 4 ESANFEFLRSHDLQLVRLGALAERYFRDDPGTCLIKLRQFAEVLAQLTAAKTGQFVSTEE 63 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 Q DLL+ L + + +FH++R GN+A HEY D A L++ +LA+W++R Sbjct: 64 AQADLLKRLKFQRVISPEVADLFHQIRIAGNRATHEYIGDHRSALTMLKMARQLAIWFHR 123 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQ---EVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 + + F FV P ++ + E+ L+ LE+ E + + E Q + +++ Sbjct: 124 TFSGNTSFRAGAFVPPPNPTDVTAELAAELERLRIALEETRSEAERARLAAEEQARAVLS 183 Query: 178 LNGYIAILEGKQQETEA---QTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAI 234 + E +++ +ALE QLA A + Q+ A A Sbjct: 184 AEEKARQEAENRSLWEQLAVESEQARSALEVQLATLQAASKQLPAQQTAAIISLADRAAT 243 Query: 235 KRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 ++L E+E+R +ID QL+ AGW AD++ LR KG RP G N AIAEWPT Sbjct: 244 --VIDLDEDETRAIIDQQLQDAGWLADTQNLRHDKGVRPVKGKNMAIAEWPTA------N 295 Query: 295 GFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 G ADY LFVG I +EAKR +V A ++++ RY++ F G + Sbjct: 296 GIADYALFVGTSCIGFIEAKRRRKNVSAAIDQAERYARGFQAGDGFAPI----------- 344 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 D S F+ PF ++TNGR Y ++T+SGIW+RDVR N +AL W+ Sbjct: 345 ----------DGSPWGEFQFPFVFATNGRPYLKQIETESGIWFRDVRQPTNRRRALVGWY 394 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 PE L +LG + + + P LR YQ+ A+ AVE A+ ++E+L+AMATG Sbjct: 395 TPEGLAALLGMDRETAHAHLKTQPYRFGFPLRPYQQRAIAAVEMALESDRREMLVAMATG 454 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI-NGDTFNSIFDIKGL 533 TGKT+ AIA+++RL+ ++RF+R+ F+VDR +LG QA G F T++ F IF ++GL Sbjct: 455 TGKTKLAIALLYRLLTAKRFRRVCFVVDRSALGSQAAGEFRTTKVVTAKAFGDIFGLQGL 514 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEP---MPVARYDCIVVDEAHRGYILDKEQTEGE 590 D PE TK+H+ T+Q LVKR L + EP P+ +YD +++DE HRGY+LD+E ++ E Sbjct: 515 EDITPESETKVHICTIQGLVKRVLYASEPRTVPPIDQYDLLLIDECHRGYLLDREMSDAE 574 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQ 650 L FRSQ DY+S YRR+L+HFDAVKI LTATPALHTVQIFGEPV+ Y YR AVIDGFLID Sbjct: 575 LSFRSQDDYISKYRRVLEHFDAVKIGLTATPALHTVQIFGEPVFTYAYREAVIDGFLIDH 634 Query: 651 DPPIQIITRNAQEGVYLSKGEQVE-RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 +PP+QI T ++ G+ GE ++ SP G + DD +FEV +FN+ ++ FN+ Sbjct: 635 EPPVQITTTLSRSGIQFRAGEALDAIYSPTGHLQRIYAPDDLNFEVEEFNKKVITIPFNK 694 Query: 710 AVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADK 769 AV EL ++DP KTL+F V +AHAD+VV++++ A Y ++E A+ KITG DK Sbjct: 695 AVAKELAKHIDPNLPGKTLIFAVNDAHADIVVDQVKQAMADYYGEIEDAAVRKITGSVDK 754 Query: 770 DARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 V +I + + +P I VTVDLLTTG+D+P I N+VFLR+V SRILYEQM GRATR Sbjct: 755 ----VGDLIRSYRNDAMPQIAVTVDLLTTGIDVPKITNLVFLRRVNSRILYEQMLGRATR 810 Query: 830 LCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGR 889 CPE++K +F+IFD VD+Y+ L+++ M+PVVV P + L+ L +E ++TEAD R Sbjct: 811 QCPEIDKETFRIFDAVDLYAKLQTLTEMKPVVVNPAISLEQLFDEFA-----QVTEADHR 865 Query: 890 SFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREK 949 + LV +++ LA RDR E G R R Sbjct: 866 AVIRDQI--LVKLRRKLGRLADQARDRYE--------------ADIGETPEETLERFRTS 909 Query: 950 GPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLE 1009 A + PG L+ DEVV+V YG P DFL+ Sbjct: 910 PLPELAGWVSDRPGIGRILDWNPE--GGEGSLLPISHHPDEVVAVTRGYGSGQKPDDFLD 967 Query: 1010 AFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDI 1069 +F + V+ + N AL V+ RPR+LTR L EL+ D+ + E++LR+AW+E +NEDI Sbjct: 968 SFTAYVRDNVNQLAALTVVLQRPRELTRAQLRELRLELDKMGYSETNLRQAWQEAKNEDI 1027 Query: 1070 AARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDD 1129 AA +I IR+AA+GD L P++ERV A+ RI + W+ Q WL R+ + + + ++D Sbjct: 1028 AASIIDFIRQAALGDPLIPYDERVKAAMKRILAKRAWTDPQRKWLKRIGEQVAREFIVDR 1087 Query: 1130 DVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 F GG L R F+ L+ +LG ++ +W A Sbjct: 1088 AALDQEPFGNDGGFNRLNRIFEGQLEAILGDINEELWRRTA 1128 >UniRef50_B2J091 Type III restriction enzyme, res subunit n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J091_NOSP7 Length = 1105 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 449/1176 (38%), Positives = 642/1176 (54%), Gaps = 83/1176 (7%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPP-- 58 M NF FL + + AE + DDPNT LIK+R FGE A+ + + Sbjct: 1 MPESLNFSFLAVHDQQLVRLGALAERYFADDPNTCLIKLRQFGELLAQLAAANIGLYEVA 60 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 E Q DLL L + + +FH+LR+IGNQA HE + A L+ L +W+ Sbjct: 61 DERQIDLLNRLRDRGLIKGEVDRLFHELRKIGNQATHELSGNHRTALSGLKYALALGIWF 120 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 +R +F F+ P + E TLK +L + E + E + Q+ + Sbjct: 121 HRAFGGGCNFDPGAFIPPPDPKI----ETETLKAELARLRDEAQRHLVIAETEAQRRTSA 176 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL 238 + K QE + L E A+ Q++ + Q + + Sbjct: 177 EDLAQEAQAKVQE-----------VLQHLVEIQAQAQNQSQHSIQQTIT--QAQVAESGV 223 Query: 239 NLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 L E E+R LID QLR AGW+ADS+ L + RP+ G N AIAE+PT G AD Sbjct: 224 RLDERETRRLIDIQLRAAGWEADSEELTYQNSIRPQKGRNLAIAEYPTA------NGRAD 277 Query: 299 YVLFVGLKPIAVVEAKRNNIDVPA-RLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 Y LF GL+ + VVEAKR + DV LN++ RYS+ F Sbjct: 278 YALFCGLQIVGVVEAKRQSKDVSEGALNQAKRYSEGFQVLGEELL--------------- 322 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 Q +K+PF ++TN R Y ++TKSGIW+ D+R N+ L WH P+ Sbjct: 323 -------AGGPWQNYKVPFVFATNARPYLQQLQTKSGIWFCDLRRPTNLRVCLATWHSPQ 375 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 LL+ L + + N L LR YQ A++AVE A+ + Q+ +LLAMATGTGK Sbjct: 376 GLLDALAQDIDQANTRLTQEGFNYGLELRDYQIRAIQAVESALAREQRILLLAMATGTGK 435 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLTDK 536 T+T IA+++RL++++RF+RILFLVDR +LGEQ AF+D+R+ +F IF+IK L + Sbjct: 436 TKTCIALVYRLLKTKRFRRILFLVDRTALGEQTSNAFKDSRMENLQSFADIFEIKDLKEI 495 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMP---VARYDCIVVDEAHRGYILDKEQTEGELQF 593 + TK+H+ATVQ +VKR L + +YDCIVVDE HRGY+LD+E ++ EL+F Sbjct: 496 ELDRDTKVHIATVQGMVKRVLYPSDSASVITPDQYDCIVVDECHRGYLLDRELSDRELEF 555 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPP 653 R DYVS YRR+L+HFDAVKI LTATPALHT QIFGEPVY Y+YR AVIDG+LID + P Sbjct: 556 RDFNDYVSKYRRVLEHFDAVKIGLTATPALHTTQIFGEPVYIYSYREAVIDGWLIDHEVP 615 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQGEVINDT-LEDDQDFEVADFNRGLVIPAFNRAVC 712 +I T+ ++EG+ + GEQ+E +PQ ++ D+ EV FNR ++ FNR VC Sbjct: 616 FKIRTKLSEEGMVWNPGEQMEFFNPQTGQLDLVHAPDEVKIEVEQFNRKVITEDFNRVVC 675 Query: 713 NELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDAR 772 L ++DP+ +KTL+FC T+ HAD+VV +L+ AF+ Y +E DAI+KIT +ADK Sbjct: 676 EALAQHIDPSLPEKTLIFCATDGHADIVVNQLKQAFQSIYGSVEDDAIVKITRNADKPL- 734 Query: 773 KVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 +I +F E P + VTVDLLTTG+DIP+ICN+VF+R+V SRILYEQM GRATRLC Sbjct: 735 ---ELIRKFRNEVNPKVAVTVDLLTTGIDIPAICNLVFIRRVNSRILYEQMLGRATRLCN 791 Query: 833 EVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFA 892 E+NK F+IFD V +Y + V +M+PVVV P + LV E+ + Sbjct: 792 EINKEVFRIFDAVRLYEAIAPVSSMKPVVVNPNISFTQLVEELETVK--------NPDAL 843 Query: 893 EHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPH 952 E QL+ K+QR + N E + AG+ + S L++ P Sbjct: 844 ETVINQLLVKIQRKRRHLSPNNQ-------------EQLEAIAGMPLSNMVSHLKQSTPQ 890 Query: 953 WSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFD 1012 E + + L+ + + DE+V ++ YG+ + P+D+L++F Sbjct: 891 QVREWWEQRKAIAQILD----LRDGGTVPMLISRHADELVGIERGYGNAERPEDYLDSFR 946 Query: 1013 SLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAAR 1072 + + + N PAL V RPR+LTR L EL+ + E +L+ AW+E NEDIAA Sbjct: 947 AFLLENMNKIPALIVVTQRPRELTRAQLKELRIGLYTAGYTEINLKTAWREITNEDIAAS 1006 Query: 1073 LIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVF 1132 +IG IR+A +GDAL P+ ERVD A+ +I W+ Q WL+R+ + +K + ++D + Sbjct: 1007 IIGFIRQATLGDALIPYTERVDRAMKKILASQLWTPPQRKWLERIGKQMKAETIVDREAL 1066 Query: 1133 KTGNFHRR-GGKAMLQRTFDDNLDTLLGKFSDYIWD 1167 G F + GG L + FD +L+ ++ + IWD Sbjct: 1067 DKGEFKTQGGGFERLNKVFDGDLENIVIQIHKNIWD 1102 >UniRef50_Q210K0 Type III restriction enzyme, res subunit n=4 Tax=Bacteria RepID=Q210K0_RHOPB Length = 1126 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 440/1182 (37%), Positives = 641/1182 (54%), Gaps = 68/1182 (5%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP--P 58 M + +NF FL + + AE+ + DDP T++ K+R F E +K + Sbjct: 1 MRSSANFGFLGDHDVRLAQLGALAESYFRDDPTTSIFKLRQFAELMSKLIAARHAAYRDE 60 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 E+ + LR L + VFH LR+ GN+A H+ +DA L+L +L +W+ Sbjct: 61 RESFEETLRRLSFERIIPKEAADVFHALRKSGNRAAHDIAGTQSDALTALKLARQLGIWF 120 Query: 119 YRLVTKDYDFPVPVFVLPERGENL---YHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKL 175 +R K D FV P + +E+ L ++L + A Q E E + Sbjct: 121 HRTYGKQPDIAFGAFVPPPEPIDATVALREEIAALGRRLTESEDAAAGAQREAEEHARAR 180 Query: 176 VALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQA-- 233 L +A ++ E + + +A++A + A L E A ++ +A Sbjct: 181 ETLEQRLAREAEERAIWE-KLAQDIENEKAEIAARLAALQAVAEHTPAADILQLVQRAEV 239 Query: 234 IKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGN 293 ++L E +R LID QLR AGW AD+K LR+S+G RP G N AIAEWPT + Sbjct: 240 ASSKIDLDEATTRALIDQQLRDAGWDADTKALRYSEGVRPSKGRNLAIAEWPT------S 293 Query: 294 QGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 G ADY LF+GL + VVEAKR +V A ++++ RYS Sbjct: 294 SGPADYALFIGLTLVGVVEAKRKRKNVSAAIDQAERYS---------------------- 331 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEW 413 + K+PF ++ NGR Y ++T+SGIW+RD R N +AL W Sbjct: 332 VGLAARADFTFAGGPWTDHKVPFVFAANGRSYLKQLETESGIWFRDTRRAANHRRALVSW 391 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 P L +L + P LR YQ+ A+ A+EK + ++ +LLAMAT Sbjct: 392 LTPSGLSGLLEVDQDAATDALKTLPFDFGFPLRDYQQAAITAIEKGLEAERRSMLLAMAT 451 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI-NGDTFNSIFDIKG 532 GTGKT+ AIAM++RL+ ++RF+R+ F+VDR +LG QA G F T+I +G F IF +K Sbjct: 452 GTGKTKLAIAMLYRLLTTKRFRRVCFVVDRSALGIQAAGEFTTTKIVSGKAFADIFGLKK 511 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTL---QSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 L D PE TK+H+ T+Q LVKR L + E PV +YD IV+DE HRGY+LD+E ++ Sbjct: 512 LEDVTPETETKVHICTIQGLVKRVLYAADTSEAPPVDQYDLIVIDECHRGYLLDREMSDA 571 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLID 649 EL FR Q DY+S YRR+L++FDAVKI LTATPALHT +IFGEP+++Y+YR AVI+G LID Sbjct: 572 ELSFRGQDDYISKYRRVLEYFDAVKIGLTATPALHTTEIFGEPIFKYSYRDAVIEGHLID 631 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVADFNRGLVIPAFN 708 +PP++I T A+ G+ K EQ+E ++ + GEV D+ FEV FN+ +V P FN Sbjct: 632 HEPPVRIETALARAGIVFEKDEQLELLNTRTGEVDLAHAPDEIRFEVEQFNKQVVTPDFN 691 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDAD 768 RAV EL ++DP KTL+F T+AHAD+VV +++ AF Y +++ A+ KITG D Sbjct: 692 RAVAEELAKHIDPALPGKTLIFAATDAHADIVVAKIKDAFAAAYGEIDDAAVKKITGSVD 751 Query: 769 KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 +VQ +I F E P IVVTVDLLTTG+D+PSI N+VFLR+V SRILYEQM GRAT Sbjct: 752 ----RVQKLIRSFRNEANPKIVVTVDLLTTGIDVPSITNLVFLRRVNSRILYEQMIGRAT 807 Query: 829 RLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADG 888 R CP++ K F+IFD VD+Y L+++ M+PVVV P + + LV E+ EA+ Sbjct: 808 RQCPDIGKEVFRIFDAVDLYPHLQNLTDMKPVVVNPSISFEQLVKEL--------VEAEQ 859 Query: 889 RSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLRE 948 + E +Q KL+R + K + AAG RL E Sbjct: 860 HAHRESIRDQFAVKLRR-------------RLKKLPEEARARFEAAAGETPEQTLKRLLE 906 Query: 949 KGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFL 1008 GP A+ + L+ + D+VV+V YG+ P+DFL Sbjct: 907 NGPTEFAKWLSSHSAIGPILDWQSD--GDTPRFMPISHHPDQVVAVTRGYGEASKPEDFL 964 Query: 1009 EAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNED 1068 + F + V+ + N AL+ V+ RPRDLTR GL +L+ D + F E++LR+AW + +N+D Sbjct: 965 DGFSAFVRDNVNTIAALKLVVQRPRDLTRAGLQDLRRALDLKGFSEANLRRAWADAKNQD 1024 Query: 1069 IAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLD 1128 IAA +IG +R+AA+GD L P+ +RV A+ ++ W+ Q WL R+ + + +++V+D Sbjct: 1025 IAASIIGFVRQAALGDPLTPYGDRVRVAMQKVMASRAWTEPQKRWLTRIGEQITKEIVVD 1084 Query: 1129 DDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 F GG L + F L+ +L ++ +W + Sbjct: 1085 RSTIDREPFIADGGFTRLNKVFGGELEAVLAGINEEMWKKTG 1126 >UniRef50_Q7UK96 Type I restriction enzyme EcoKI R protein n=3 Tax=Bacteria RepID=Q7UK96_RHOBA Length = 1138 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 449/1186 (37%), Positives = 642/1186 (54%), Gaps = 83/1186 (6%) Query: 3 NKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNI--PPCE 60 + NF FL+G A A AE DDPNT L+K+R E A+ + L I E Sbjct: 10 HPGNFWFLEGYQPVLLAHALRAERYVFDDPNTALVKLRQLAEFFAREVAAELGIATGSQE 69 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 + ++ R L ++ + V +R+ GN A H + DA CL+L +LA+W+++ Sbjct: 70 DFVNVERRLRDSGILNQQLRDVMRTVRQKGNSAAHSLAGERRDALHCLKLVRQLAIWFHK 129 Query: 121 LVTKDYDFPVPVFVLPERG---ENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 V +F FV P + +E+ L++ +E+Q E +AE E + + Sbjct: 130 TVRGANNFHAGPFVPPADPAQGDEQLSEELARLRETVEKQQAELDAAKAESEKLGEVVRD 189 Query: 178 LNGYIAILEGKQQ-------ETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEIT 230 + +G +Q ETE Q R+ E L+E A+ A+Q+ + R+ + Sbjct: 190 RQSAYELAKGNEQAAMELAAETEETLQQRIEDYERLLSETAAKNAEQSAEAREDIIE--A 247 Query: 231 DQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDE 290 Q + ++L E ++R LID QLR AGW+AD+ LR++ G RP+ G N AIAE PT Sbjct: 248 SQKAAQEISLDEFDTRKLIDQQLRDAGWEADTSELRYANGIRPQKGRNMAIAEVPT---- 303 Query: 291 TGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPD 350 + G ADYVLF GL PIA VEAKR + + +++++RYSK F Sbjct: 304 --DDGIADYVLFTGLTPIATVEAKRKRRNARSAIDQAHRYSKSFRMSSDYVQ-------- 353 Query: 351 EVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKAL 410 + +PF +STNG + + +SGIW+RDVR N +AL Sbjct: 354 --------------PGGPWGEYSVPFVFSTNGTPFHRQLIDQSGIWFRDVRVETNHPRAL 399 Query: 411 PEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 W+ PE L ++L + N P L LRYYQ DA+ AVEKAI K Q EILLA Sbjct: 400 TGWYTPEGLQDLLKLDIPAANAKLETEPRDY-LPLRYYQRDAIEAVEKAIAKDQTEILLA 458 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFD 529 MATGTGKTRTAI +++RLI++ RF RILF+VDRRSLGEQA AF+D ++ + +F I+D Sbjct: 459 MATGTGKTRTAICLLYRLIKASRFNRILFVVDRRSLGEQAFDAFKDVKLEQNQSFPEIYD 518 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSD---EPMPVARYDCIVVDEAHRGYILDKEQ 586 +K L D P+ TK+H+ T+QS+VKR + D EP PV +YDCIV+DE HRGY LD++ Sbjct: 519 VKELGDVKPDRETKLHLCTIQSMVKRVVDQDSNSEPYPVDQYDCIVIDECHRGYTLDRDM 578 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGF 646 +E EL +R QLDYVS YRR+LDHFDAV+I LTATPALHT +IFG PVY+Y+YR AVID Sbjct: 579 SEEELGYRDQLDYVSKYRRVLDHFDAVRIGLTATPALHTTEIFGSPVYQYSYRQAVIDNN 638 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGE-VINDTLEDDQDFEVADFNRGLVIP 705 L+D +PP I+T ++ G++ GE V+ + + ++T D+ D E+ FNR + Sbjct: 639 LVDHEPPFIILTELSESGMHWDAGETVKYFDTVTKSIADETTPDEIDIEIDGFNRLAITE 698 Query: 706 AFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITG 765 +FN+ VC+ L +D T KTL+FCV + HADMVV L AA ++++ HD + KITG Sbjct: 699 SFNQVVCDVLAQQIDHTQPGKTLIFCVRDTHADMVVRLLTAAIEQRHGPQPHDTVKKITG 758 Query: 766 DADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 D + I RF E +P VVTVDLLTTG+D+P I N+VFLR+ +SRIL++QM G Sbjct: 759 DI----ERTSEAIRRFKNEPIPKYVVTVDLLTTGIDVPEITNVVFLRRTKSRILFDQMIG 814 Query: 826 RATRLCPE-----VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSET 880 RATRLC + +K F I+D V +Y L+ M+PVV +P + LV Sbjct: 815 RATRLCKDLFFDGEDKEYFHIYDAVGVYEALQDHTDMKPVVAKPFTMFKKLVE------- 867 Query: 881 YKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFN 940 + +QLVAKL+R N + + G Sbjct: 868 -LFQSSSDPDAHADIRQQLVAKLRRKTPSINKNWLDTFELLA-------------GDTPE 913 Query: 941 GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD 1000 + + I L++ K D + I + D +V ++ YG Sbjct: 914 AISDLWASSSDAELQQWLTDHASLITELDQRKAD-----GSIIISEHADALVGIERGYGG 968 Query: 1001 YDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKA 1060 P+D+LE+F + PAL V RPRDLTRK L ELQ ++ F E++++ A Sbjct: 969 NQKPEDYLESFRQFLVEHKTDIPALILVTTRPRDLTRKDLKELQLQLEQHGFNETAIKSA 1028 Query: 1061 WKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQA 1120 K+T N+DIAA ++G +R A + + L P+EERVD A+ I W +Q WL+R+ + Sbjct: 1029 VKDTTNQDIAASILGFVRHAMLNEPLLPYEERVDEAMRSILTSQKWQPQQRKWLERIGKQ 1088 Query: 1121 LKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 +KE VV+D D+F+ G F GG + + FD L+ ++ IW Sbjct: 1089 IKENVVIDRDLFEVGAFQDHGGFVKIDKVFDGRLNEVMQSIITSIW 1134 >UniRef50_C4KDM8 Type III restriction protein res subunit n=4 Tax=Proteobacteria RepID=C4KDM8_THASP Length = 1137 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 455/1182 (38%), Positives = 633/1182 (53%), Gaps = 76/1182 (6%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP--PCEN 61 SNF LK + + AE + DDPNT L+K+R E A+ + I P E Sbjct: 6 PSNFGHLKVHDQQLVRLGMLAERYFSDDPNTCLLKLRQLTELLAQLAASKVGIYTSPDEK 65 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRL 121 Q DLLR L V + ++F ++R+ GN A H D A + LRL ++L VW++R Sbjct: 66 QVDLLRRLQDKGIVPREVGALFAEVRKAGNDANHCLSGDHRTALLGLRLSWQLGVWFHRT 125 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 KD F F P N E LK +L+ E +Q +A + Q L + Sbjct: 126 F-KDPAFKSGPFQPPAPPAN----ESAELKTELDALRAELSQYRAAQKDAAQALDQIQVQ 180 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR-TLNL 240 I E E AA L A+ + K + + + Sbjct: 181 IRQAEDDSAVWETMAAEAEAAKAELLQRLEVLQAQAAAAPPQVIAKFVAAADSAAAVIQI 240 Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 SE ++R LID QL AGW DS + F++G RP+ G N AIAEWPT G ADY Sbjct: 241 SEGDTRRLIDQQLALAGWTVDSARITFARGIRPQRGQNLAIAEWPT------ETGPADYA 294 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LF+ L P+A+VEAKR NIDV A L ++ RYS+ PE E Sbjct: 295 LFIDLMPVAIVEAKRKNIDVSAALQQAKRYSRG-------------------FRVSPEVE 335 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 + F++PF +S+NGR Y + +SG+W+ D+R N+ AL W+ PE L Sbjct: 336 LPLSNFGANAEFRVPFVFSSNGRPYLRQLAERSGVWFCDLRRPANLGHALDGWYTPEGLN 395 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 +L + + + A+ P LR YQ+ A+ A E +I GQ+ ILLAMATGTGKT+T Sbjct: 396 ALLQRDDDRAHTELANAPFDFGFPLRPYQQRAILATEASIRDGQRAILLAMATGTGKTKT 455 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLTDKFPE 539 IA+++RL++++RF+RILFLVDR +LGEQA AF+DTR+ TF IF IK L + P+ Sbjct: 456 CIALIYRLLKAKRFRRILFLVDRSALGEQAANAFKDTRMERLQTFADIFGIKELEVQAPD 515 Query: 540 DSTKIHVATVQSLVKRTLQSDE---PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 D T +H+ATVQ +V+R L + P P+ +YDCI+VDE HRGY+LD+E ++ EL FR Sbjct: 516 DDTAVHLATVQGMVQRVLYPSDGTPPPPIDQYDCIIVDECHRGYLLDRELSDTELSFRGY 575 Query: 597 LDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQI 656 DYVS YRR+LD+FDAVK+ LTATPALHT QIFG PV+ Y YR AV+DG+L+D +PPIQ+ Sbjct: 576 DDYVSKYRRVLDYFDAVKVGLTATPALHTTQIFGTPVFAYGYREAVVDGYLVDYEPPIQV 635 Query: 657 ITRNAQEGVYLSKGEQVERISPQGEVIN-DTLEDDQDFEVADFNRGLVIPAFNRAVCNEL 715 T + +G+ GE+V+ + + I D+ +V DFNR ++ FN VC L Sbjct: 636 HTLLSGQGIAWKAGEEVKVYNTARQQIELFKTPDEIKLKVDDFNRKVITRPFNEVVCTYL 695 Query: 716 TNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQ 775 LDP +KTL+FCV+++HADMVV+ L+ AF +Y +E DA+IKITG ADK Sbjct: 696 AQELDPASRRKTLIFCVSDSHADMVVDLLKKAFAAQYGAVEDDAVIKITGAADKPL---- 751 Query: 776 TMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN 835 +I R+ ERLPN+ VTVDLLTTGVD+P ICN+VFLR+V SRIL++QM GRATRLC Sbjct: 752 QLIRRYKNERLPNVAVTVDLLTTGVDVPEICNLVFLRQVNSRILFDQMLGRATRLCNFGG 811 Query: 836 ---KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFA 892 K +F++FD V I+ + + M+PVVV PK+ L E+ + Sbjct: 812 TDVKDAFRVFDAVRIFEAIGDMTAMKPVVVNPKITFTQLSQELATLK------------- 858 Query: 893 EHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPH 952 ++ +L R LA + DK + + AG++ F +L+ Sbjct: 859 ----DESATELVRDQFLAKLQAKKRHLTDKNRQDF----EAKAGMSVQAFVQKLKAMPLA 910 Query: 953 WSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFD 1012 A F + P L++ + + D + YG P D++ AF Sbjct: 911 DVAAWFVQNPELGELLDRRS---DGPEREMFISEHTDAFDRAERGYGKGKKPDDYIRAFS 967 Query: 1013 SLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAAR 1072 ++ N PAL V+ RPR+LTR L EL D+ F E+SL AW+E N+DIAAR Sbjct: 968 EFIKTQGNQIPALVTVLTRPRELTRAQLRELVLALDQAGFTETSLASAWRELTNQDIAAR 1027 Query: 1073 LIGHIRRAAVGDALKPFEERVDHALTRIK----GENDWSSEQLSWLDRLAQALKEKVVLD 1128 ++G+IR+AA+GDAL P+ ERVD AL + WS+ Q WL R+A K V++D Sbjct: 1028 IVGYIRQAAIGDALVPYVERVDRALQHLLAHPPAGKPWSTPQRDWLKRIAAQTKANVLVD 1087 Query: 1129 DDVFKTG--NFHRR-GGKAMLQRTFDDNLDTLLGKFSDYIWD 1167 F R GG L + F+ L +L F+D +W Sbjct: 1088 RSAIDDPDLIFKREGGGFNRLDKVFNGQLQPVLDAFNDALWA 1129 >UniRef50_B6R0S4 Type III restriction enzyme, res subunit family n=5 Tax=Alphaproteobacteria RepID=B6R0S4_9RHOB Length = 1131 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 434/1182 (36%), Positives = 645/1182 (54%), Gaps = 64/1182 (5%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNI---P 57 MM++SNF LK +N + AE + D NT LIK R + E K + Sbjct: 1 MMSQSNFLHLKALNSDLCRLGMVAEQVFSLDANTCLIKTRQYTEFMVKDVAARAAAYRAE 60 Query: 58 PCENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVW 117 E LL L + + + +FH +R+ GN A H + A L+ L VW Sbjct: 61 DKETAFALLNRLSRDGILPKQVADIFHAVRKPGNDAAHGVEGTSSQALTSLKFCMVLGVW 120 Query: 118 YYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 Y R D +F P F++P+ + E+ ++Q + ++ ++ A Sbjct: 121 YQRSYGPDVNFEPPPFIVPKAP-KVLSVELAAEIADYKEQSKLFEDRLKKLAKSDEERAA 179 Query: 178 LNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRT 237 + + + + + + + LE +A+ AE +QTEQ+ + + A K Sbjct: 180 ELDQVRQEAERAVRSLSDLEKQNSELEKAIAKLQAEAEEQTEQQLQKLKTLAQNAAAK-- 237 Query: 238 LNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 L L+E ++R LID QL+ AGW+AD+ LR+S GARPE G N+AIAEWPT G Sbjct: 238 LELNENDTRKLIDRQLQDAGWEADTSILRYSSGARPEKGRNQAIAEWPT------EGGRV 291 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY LFVGL+ + V+EAKR + DVP+ L ++ Y+ + + Sbjct: 292 DYALFVGLECVGVIEAKRQSADVPSVLQQADEYAHKIKLEAKQLLI-------------- 337 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 + + +++PF +++NGR + KTKSGIW+RDVR N + ALP W P+ Sbjct: 338 ---DAPWQHGLDEPYRVPFIFASNGRPFVRQFKTKSGIWFRDVRLHTNHANALPSWFSPD 394 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 +L L + ++ N A+ LR YQE+A+ AVEK I G++ +L+AMATGTGK Sbjct: 395 DLAGKLKQDTEQANNALAEEAFGQT-SLRPYQEEAIDAVEKEIAGGKRSVLVAMATGTGK 453 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLTDK 536 TRT IA+M+RL++++RFKRILFLVDR +LG+Q A T G F+ I+++ GL K Sbjct: 454 TRTCIALMYRLLKTKRFKRILFLVDRTALGDQTTDALNTTEFEGFYKFSQIYNVAGLDQK 513 Query: 537 FPEDSTKIHVATVQSLVKRT---LQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 P+D+T+IHVATVQSLV R E + YDCIV+DEAHRGY LD + EGE + Sbjct: 514 LPDDATQIHVATVQSLVARINNTEDPKERLTPGMYDCIVIDEAHRGYTLDADLKEGEENY 573 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFG--EPVYRYTYRTAVIDGFLIDQD 651 R Y SAYR +L +FDAVKI LTATPALHT+QIF +P Y Y YR AV++GFLID Sbjct: 574 RDVSAYESAYRNVLSYFDAVKIGLTATPALHTLQIFDCEKPSYSYGYRQAVVEGFLIDHL 633 Query: 652 PPIQIITRNAQEGVYLSKGEQVERISP---QGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 PP +I T A+ G+ + GE VE + + + N E + ++++A FNR + FN Sbjct: 634 PPKRITTALAEAGITFNGGEDVEIVDRHTGEVTLHNLPDEVELEYDLAKFNRRVYSENFN 693 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDAD 768 R VC + N + P KTL+F T+ HAD +V L+ +++Y L +D ++KITG Sbjct: 694 RIVCQTIANEIAPDAPGKTLIFAATDTHADDIVRLLKEELREEYGDLHNDMVMKITG--- 750 Query: 769 KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 R + +I +F + LP VVTVDLLTTGVDIP + N+VF+R+V+SRILY+QM GRAT Sbjct: 751 -SVRDAKGLIKKFRNDPLPKYVVTVDLLTTGVDIPVLANLVFVRRVKSRILYDQMIGRAT 809 Query: 829 RLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADG 888 RLCPE+ K +F+IFD VD+Y+ L+ + MRPVVV+P + L L+ ++ A Sbjct: 810 RLCPEIGKQNFRIFDAVDLYAELQQMSDMRPVVVKPNMPLVELIADLD--------RAPN 861 Query: 889 RSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLRE 948 Q+V K++ + E A G + + + L Sbjct: 862 AEEENWVAGQVVVKMRALAKRMDEAGR-------------EALDSAMGGDADTVINDLSR 908 Query: 949 KGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFL 1008 K + +K P + L + + L + +D+++ ++ ++GD TP+ ++ Sbjct: 909 KTGAEVKDWLSKHPRALENLVRALAKKDPLKNGVAISYHEDQLLHIREVFGDNATPESYI 968 Query: 1009 EAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNED 1068 E+F+ V+ + N+ PA+ AV +PR+LTRK L +L D HF E+ LR A+ RN D Sbjct: 969 ESFEEFVRENMNSIPAMVAVTQKPRNLTRKELTDLAAQLDEAHFSEAMLRAAYGRARNAD 1028 Query: 1069 IAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLD 1128 IAA +IG++R+AA+GD L P+ RV++A+ +I G DW S Q+ WL R+ +ALK+K V D Sbjct: 1029 IAAHIIGYVRQAALGDPLVPYASRVENAIEKIIGSRDWKSNQIQWLRRIGRALKDKPVAD 1088 Query: 1129 DDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 + G F +GG + + FD L +L + ++ IW A Sbjct: 1089 PSLLNQGVFQDKGGFKRISKEFDGKLGDVLEEINEAIWTSSA 1130 >UniRef50_B2A6M4 Type III restriction protein res subunit n=5 Tax=Firmicutes RepID=B2A6M4_NATTJ Length = 1082 Score = 842 bits (2176), Expect = 0.0, Method: Composition-based stats. Identities = 430/1179 (36%), Positives = 662/1179 (56%), Gaps = 111/1179 (9%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNI--PPC 59 M KSNF+FL G + AE N DPNTT+IK+RMF E K + + N+ P Sbjct: 1 MQKSNFDFLTGDWSILSELGEIAEKNLHTDPNTTIIKLRMFAETLVKFIFAVENLEEPED 60 Query: 60 ENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYY 119 + Q L L K + D++L +FH +R+IGN+A H + +++DA+ LR+ FR++VW+ Sbjct: 61 QKQVSRLAILKKEDLLTDDLLDLFHTIRKIGNKAAHAGYGNIDDAKTLLRMAFRISVWFM 120 Query: 120 RLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALN 179 ++ + +DF P +V PE K E +E+ + + + ++K+ L Sbjct: 121 QVYGR-WDFEPPAYVEPE-------------KIDFESLEKERERLEKIASSYEKKVKKLE 166 Query: 180 GYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLN 239 + L K + + + + A + + L Sbjct: 167 NELNSLRSKASRDDEKKERKTKARQ-----------------------------LGTGLE 197 Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 L+E E+R +ID +LR GW+AD++T+R+SKG RPE G N AIAEWP G DY Sbjct: 198 LTEAETRTIIDDKLRAVGWEADTETIRYSKGIRPEKGRNLAIAEWPV------KNGSVDY 251 Query: 300 VLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 LFVG++ I ++EAKR + ++ + + ++ +YSK E Sbjct: 252 ALFVGMQFIGIIEAKRKSKNIQSDIEQAKQYSKRIYQVENEEI----------------- 294 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 + +K+PF ++TNGR Y ++ KSGIW+ D R N + L +W+ PE L Sbjct: 295 ------SGPWNGYKVPFLFATNGRPYLKQLEHKSGIWFLDARKKTNHPRPLKDWYSPEGL 348 Query: 420 LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTR 479 ++ ++ + + P + LGLRYYQE+A++A+EK + +G+Q +L+AMATGTGKTR Sbjct: 349 TDLSKKNIEEATKELKEEP-LDYLGLRYYQEEAIKAIEKGLEEGRQSLLIAMATGTGKTR 407 Query: 480 TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLTDKFP 538 AI +++RL++S+RFKR+LFLVDR +LG+QA AF+D+++ ++F IF+++ L P Sbjct: 408 MAIGLIYRLVKSRRFKRVLFLVDRNALGKQAENAFKDSKLESFNSFTEIFELQSLKAPNP 467 Query: 539 EDSTKIHVATVQSLVKRTLQSD---EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 TK+H++TVQ +++R +D + V +YDCIVVDEAHRGY LD E E EL FR Sbjct: 468 NPETKVHISTVQGMMRRIYYNDPEKDKPTVDQYDCIVVDEAHRGYTLDSEMEELELYFRD 527 Query: 596 QLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 DYVS YR++LD+FDAV+I LTATPALHTV+IFG P+Y Y+YR AV+DG+LID +PP Q Sbjct: 528 HNDYVSKYRQVLDYFDAVRIGLTATPALHTVEIFGSPIYTYSYREAVVDGYLIDHEPPYQ 587 Query: 656 IITRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 I T+ +EG+ GE+V+ + G++ + +ED+ + +V+ FN+ ++ +FNR V E Sbjct: 588 INTKLKKEGINWQVGEEVDVYDAKSGDIKKEVMEDEVEIDVSQFNKQVITESFNRTVIKE 647 Query: 715 LTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV 774 L NY+ P KTL+F + HAD +V L+ + KY +E +A++KITG + Sbjct: 648 LVNYIHPELEGKTLIFAANDDHADTIVRILKEELENKYGPIEDNAVMKITG----SLKNP 703 Query: 775 QTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV 834 I F ERLPNIVVTVDLLTTGVD+P IC++VF+R+VRSRILYEQM GRATR C E+ Sbjct: 704 LQAIKLFQNERLPNIVVTVDLLTTGVDVPPICSLVFMRRVRSRILYEQMLGRATRRCDEI 763 Query: 835 NKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEH 894 +K F IFD V+IY L+ M+PVV +P V ++ LVNE+ + ++ Sbjct: 764 DKDHFNIFDAVEIYEALKPYTDMKPVVKKPNVPVKQLVNELEQ--------INSTDKQKN 815 Query: 895 SHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWS 954 +Q+ AK+QR + +E + + L G + + ++ Sbjct: 816 HIDQIKAKIQRKS------KHWTEEEKENFKALT------GGKTVDEYIDWMKNSETEEI 863 Query: 955 AEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSL 1014 K + +++ + + DE +S YG+ + P+D+LE F Sbjct: 864 VNELQKSESIVNYIDENRER----PQYQYISNHKDEHLSTTRGYGNAEKPEDYLEGFKQF 919 Query: 1015 VQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLI 1074 ++ + N PAL+ V RP++LTR+ L +L+ D+Q + E +L+ AW++ +NEDIAA +I Sbjct: 920 IEENINHIPALKVVCQRPKELTREDLRKLKIELDQQGYNEKNLQAAWRDAKNEDIAADII 979 Query: 1075 GHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDD---V 1131 IR+ VGDAL EERV +A+ RI W Q WL+R+ + L E+ VL D Sbjct: 980 SFIRQLTVGDALVSHEERVKNAMKRIYRMKAWPPVQKKWLERIEKQLLEEKVLGPDPEEA 1039 Query: 1132 FKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 F+ F R GG L + FD +D ++ K ++ ++++ Sbjct: 1040 FEVQPFKRHGGYKQLNKIFDGQIDMIVEKINEELFNQEG 1078 >UniRef50_B0QS40 Type III restriction enzyme, res subunit n=1 Tax=Haemophilus parasuis 29755 RepID=B0QS40_HAEPR Length = 1121 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 433/1174 (36%), Positives = 663/1174 (56%), Gaps = 61/1174 (5%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL--LNIPPCEN 61 ++NF FL+ + AE + +DPNT++ K+R FGE AK + + L +P Sbjct: 2 ETNFSFLQA-FPTLFKQVQFAERYFSEDPNTSMYKLRQFGEFLAKQIAVRFRLALPENIT 60 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRL 121 Q+D L+ L +D ILS+FH L+ GN+AVHE D A + ++L++W+ R Sbjct: 61 QNDRLKALK-ECRLDREILSMFHFLKNAGNEAVHEGIEDSQKAITAMIAAWQLSIWFVRT 119 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 + PV P+ + + + E L + E + + Q VEA Q ++ A++ Sbjct: 120 FGDNMANFEPVPFCPDYLQAVRNNE--NLAKYTENPTASQQEEQQLVEANQAEIQAISTA 177 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 ++ ++++ + A Q + K Y + L Sbjct: 178 LSNQSEEEKQA--------------FDVAREKRAAQAFERLKNYELRL----------LD 213 Query: 242 EEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E+++R L ID LR+AGW+ADS+ L + KG RPE G AIAE+P GKD ADYV Sbjct: 214 EKQTRLLMIDPMLREAGWEADSENLDYRKGVRPEKGRYLAIAEYPVGKD------RADYV 267 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LF GL P+A+VEAK+ N++V +++ ++ RY+K F+ + E+ + V Sbjct: 268 LFCGLVPVAIVEAKKANVNVASKVAQAERYAKQFE-------ITENLTAPWVLAKRTVAW 320 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 S + + F +PF YS NG+ Y SG W+RDVR N+ +AL ++H P+ LL Sbjct: 321 ASDESANDGLHFYVPFVYSCNGKPYLKQQLELSGTWFRDVRQPSNLKRALQQFHTPDVLL 380 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 EML + ++ Q + P LGLR YQE A++AVE+ + +G++E+LLAMATGTGKTRT Sbjct: 381 EMLKKDEEQATQKLENEPFDF-LGLRPYQEKAIQAVEQNLSEGKREMLLAMATGTGKTRT 439 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED 540 ++ R +++ RF+RILFLVDR +L EQA F + + + + E Sbjct: 440 ITGLIHRFLKTDRFRRILFLVDRTALAEQAEDTFGGMNVEPNQTLNTL-YNFAVNGVVEP 498 Query: 541 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 TK+ VATVQSLVK+ S E + ++DCI+VDEAHRGY LD+E T+GEL+F+ Y+ Sbjct: 499 ETKVKVATVQSLVKQIFYSGEAPAIDQFDCIIVDEAHRGYTLDQEMTDGELEFQDNEQYL 558 Query: 601 SAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 S YRR+LD+FDAVKI LTATPALHT +IFGEPV+ Y+Y+ AVID +L+D +PPI+I T+ Sbjct: 559 STYRRVLDYFDAVKIGLTATPALHTKEIFGEPVFVYSYKEAVIDDYLVDHEPPIEIKTKL 618 Query: 661 AQEGVYLSKGEQVERIS-PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL 719 Q+G++ +GEQ+E I GEV+ L D+Q+F+V FNR ++ +FN+ VC L +YL Sbjct: 619 NQDGIHFERGEQLEFIDTSTGEVVLSELADEQNFDVESFNRTVLNDSFNQVVCEVLLDYL 678 Query: 720 DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ-LEHDAIIKITGDADKDARKVQTMI 778 DP GS+KTL+FC T+ HAD + L FK+KY +++ KITG ADK T+I Sbjct: 679 DPFGSEKTLIFCATDLHADKIKGILDTLFKQKYGDEYNTNSVAKITGQADKP----NTLI 734 Query: 779 TRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTS 838 F ER PNI +TVDLL+TG+D+P ICN+VFLR+V+SR+LYEQMKGRATR C + K+ Sbjct: 735 KYFKNERYPNIAITVDLLSTGIDVPEICNLVFLRRVKSRVLYEQMKGRATRKCEALGKSV 794 Query: 839 FKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQ 898 F I+D V + + SVDTM+P+V + LV E+ + E + A + Sbjct: 795 FHIYDAVGLCRAMASVDTMKPIVKNVHQPISQLVEEL---QAVGKIENNTNPLANEHQQA 851 Query: 899 LVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVF 958 L+ ++ + I D+ Q++ + + GV N L + G + + F Sbjct: 852 LLEQISQKIMRLLRKADKMAEKSPQMKENLAILEQEWGVKPNLLHKHLLKIGVQGAVQFF 911 Query: 959 NKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRS 1018 K + +L+ + P+ +DEV + +YG ++ D+L+ F +Q+ Sbjct: 912 EKHRNILTEFNRLQAML-PSERMPVISTHEDEVREITPIYGKGESADDYLQEFMVYIQQH 970 Query: 1019 PNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIR 1078 N A+Q +INRPR+LTR+ L +++ D Q F ++ L KA + N I A ++ HIR Sbjct: 971 SNDNVAIQVIINRPRNLTRQQLKDIELALDAQGFSKAKLNKAMGQKTNRQITAGIVAHIR 1030 Query: 1079 RAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFH 1138 RAA+GD+L PFE+RVDHA+ ++ + + Q WL+R+A+ LK+ D++ Sbjct: 1031 RAAIGDSLVPFEQRVDHAIEKLCQTHSFKPNQQKWLERIAKQLKQN---HDEILDRSRLT 1087 Query: 1139 R--RGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 +G + ++ F + LD LL + ++ +W+++ Sbjct: 1088 ELFQGQFSGIRAEFGETLDELLAELNEGLWEKMG 1121 >UniRef50_C6CZ63 Type III restriction protein res subunit n=3 Tax=Bacillales RepID=C6CZ63_PAESJ Length = 1083 Score = 826 bits (2134), Expect = 0.0, Method: Composition-based stats. Identities = 433/1173 (36%), Positives = 636/1173 (54%), Gaps = 113/1173 (9%) Query: 6 NFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE--NQH 63 NFEFL + + AE N DPNT+LIK+RMFGE K++ + + + Q Sbjct: 4 NFEFLHDRWEILSDLGEMAERNLFIDPNTSLIKLRMFGETLTKYICAMEEMDETKELTQV 63 Query: 64 DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHE-YHNDLNDAQMCLRLGFRLAVWYYRLV 122 D L +L + + D+I+ H LR+IGN+AVHE + +AQ L FRL+VW+ ++ Sbjct: 64 DRLSQLKRDDLISDDIVDYLHTLRKIGNKAVHESGYGSTREAQASTLLAFRLSVWFMQVY 123 Query: 123 TKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYI 182 D++F P ++ P ++ EV QL+Q R + A+++ + Sbjct: 124 G-DWNFQAPDYIEPVEQQDSAGNEV-----QLDQLARAYEEKMAKLQQE----------- 166 Query: 183 AILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSE 242 LA + T +++K + + L+E Sbjct: 167 ------------------------LAALRQQQTNVTHEDKKK--RHSKSKQAGSAFALTE 200 Query: 243 EESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLF 302 E+R +ID +LR+AGW+ DS+TLR+ G RPE G N AIAEW GFADY LF Sbjct: 201 AETRLIIDEKLRQAGWEVDSQTLRYGLGTRPEKGRNLAIAEWAL------KTGFADYALF 254 Query: 303 VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETS 362 GL+ + +VEAKR + +V A + ++ +Y+ Sbjct: 255 CGLELVGIVEAKRISKNVEADIAQAKKYAMQVVRHGDEII-------------------- 294 Query: 363 WQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEM 422 +++PF +STNGR Y +K SGIW+ D R N + L W+ P+ L ++ Sbjct: 295 ---HGPWGNYQVPFLFSTNGRPYLEQLKHMSGIWFLDARKPTNHPRPLQAWYSPQGLKDL 351 Query: 423 LGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAI 482 L + ++ + D + L LR YQEDA+ +VE AI +GQ+ ILLAMATGTGKTR AI Sbjct: 352 LKQDTEQAAKDLQDET-LDYLKLRPYQEDAILSVEGAIDEGQRSILLAMATGTGKTRMAI 410 Query: 483 AMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLTDKFPEDS 541 +++RLI+ RFKRILFLVDR +LG QA AF+D+++ +F IF+++ L DK P Sbjct: 411 GLIYRLIKHNRFKRILFLVDRSALGRQAEAAFKDSKLESYHSFTEIFELQTLDDKKPNPE 470 Query: 542 TKIHVATVQSLVKRTLQSD----EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 TK+ +ATVQ +VKR ++ E V +YDC++VDEAHRGY LDKE +E EL+FR Sbjct: 471 TKVQIATVQGMVKRIFYNESDEAEIPSVDQYDCVIVDEAHRGYTLDKEMSELELEFRDHE 530 Query: 598 DYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQII 657 DYVS YR++LD+FDA +I LTATPALHTV+IFG PV+ Y+YR AVIDG+LID +PP+Q Sbjct: 531 DYVSKYRKVLDYFDAFRIGLTATPALHTVEIFGRPVFNYSYREAVIDGYLIDHEPPMQFE 590 Query: 658 TRNAQEGVYLSKGEQVERISPQ-GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT 716 T+ + G+ GE+V G V + L+D+ + EV FN+ ++ FNR + ELT Sbjct: 591 TQLKKHGIKWQVGEEVAVYDISSGNVEKELLQDEINLEVTQFNKTVITENFNRVILEELT 650 Query: 717 NYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQT 776 Y+DP KTL+F T+ HADMVV + +K Y ++ +A++KITG + Sbjct: 651 KYIDPESEGKTLIFAATDDHADMVVRIFKEELEKAYGAVDDNAVLKITGSI----KDPLH 706 Query: 777 MITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNK 836 I F ERLP+IVVTVDLLTTG+DIPSI N+VFLR+VRSRILYEQM GRATR C E+ K Sbjct: 707 TIKLFKNERLPSIVVTVDLLTTGIDIPSITNLVFLRRVRSRILYEQMLGRATRRCDEIGK 766 Query: 837 TSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSH 896 F I+D V IY TL+ M+PVV +P V L L +E+ E + Sbjct: 767 DHFMIYDAVGIYETLKPYTDMKPVVTKPTVSLDVLTSELAQLEDEG--------QGKPHK 818 Query: 897 EQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAE 956 +Q++AK+QR T + D+ + G++ F L+ ++ Sbjct: 819 DQIIAKMQRKKRTWTQ------------KDHDDFKALSGGMSIEKFIDDLKSMSVLQASA 866 Query: 957 VFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQ 1016 +A +++ + + +D+++S YG+ D P+D+LE F + + Sbjct: 867 DLQTKKPLVAYIDENRGR----GHRIYISEHEDKLISTSRGYGNADKPEDYLEGFHAFIT 922 Query: 1017 RSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGH 1076 + N PAL + RP DLTR L L+ D++ + E L+ AW++ +NEDIAA +I Sbjct: 923 ENLNLIPALTIICTRPNDLTRDELRRLRVELDQKGYSEKMLQAAWRDAKNEDIAADIISF 982 Query: 1077 IRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDD---DVFK 1133 IR+ A+GD L EER++ A+ +I WS Q WL R+ + L ++ VLD F+ Sbjct: 983 IRQQALGDPLISHEERIEGAMKKIYDMKVWSKVQKDWLKRIEKQLLQESVLDPNPEKAFE 1042 Query: 1134 TGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 F +GG L + FD +DT++ + ++ Sbjct: 1043 VEPFKSKGGYKQLNKIFDGEMDTIVTTINTALY 1075 >UniRef50_C7GDQ4 Type I restriction-modification system, R subunit n=5 Tax=Bacteria RepID=C7GDQ4_9FIRM Length = 1091 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 395/1185 (33%), Positives = 631/1185 (53%), Gaps = 116/1185 (9%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHL--GLLLNIPPCEN 61 KSNF+FL+ C AE DPN+ L+K+ M GE+ + + +P Sbjct: 2 KSNFDFLQSEFPVLSTFGCLAEKYCFSDPNSCLMKLGMIGESIVNLMFTYDRIQLPYDNT 61 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRL 121 + L + + ++ + H LR+ N+AVHE + +++ ++ L + + L W+ + Sbjct: 62 AVTRIDNLQREGLLTRDLTDILHALRKARNKAVHENYESVSECKILLEMAYSLCEWFMQT 121 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 D+++ FV+P+ + +K+ Sbjct: 122 YG-DWNYQHHDFVMPKL--------------------------------EHKKVSVTQEE 148 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 A E + +E Q + + + +A + + A + +R S Sbjct: 149 KAAEEKQVEELTKQAEQKASMADAISKSERQKRAGKMASQR----------------PKS 192 Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 E E+R++ID QLR+ GW+AD++ LR+SKG RP G N AIAEWPT G G DY L Sbjct: 193 EAETRYIIDEQLRQVGWEADTENLRYSKGTRPAKGHNMAIAEWPT-NSTLGQSGRVDYAL 251 Query: 302 FVGLKPIAVVEAKRNNIDVPARLN-ESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 FV K I V+EAK + D+P+ ++ + Y + + + Sbjct: 252 FVDTKLIGVIEAKAIHKDIPSVIDYQGKEYPRNIRKEDSKYKI----------------- 294 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 +K+PF ++TNGR Y ++TKSGIW+ D+R+ N AL W P ++ Sbjct: 295 ------GEWGEYKVPFTFATNGRPYLKQLETKSGIWFLDLRNPVNNPTALHGWMSPMGMI 348 Query: 421 EMLGSEPQKQNQWFADNP-----GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 E+L PQ+ N P + L LR YQ +A++A E+++++G++ ILLAMATGT Sbjct: 349 ELLEKNPQEGNSALKALPYDFLTDPNGLNLREYQLNAIKAAEQSVIEGKKNILLAMATGT 408 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGLT 534 GKTRT + M++R +++ RFKRILFLVDR SLGEQA F++ ++ T + I++IKG Sbjct: 409 GKTRTVLGMIYRFLKTNRFKRILFLVDRTSLGEQAADVFKEVKLEDLMTLDEIYNIKGFE 468 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDEPMPVA--RYDCIVVDEAHRGYILDKEQTEGELQ 592 +K + T+I VATVQS+VKR L +D + A YD +++DEAHRGYILDKE + E+ Sbjct: 469 EKNIDKETRIQVATVQSMVKRILYNDGEIMPAVTDYDLVIIDEAHRGYILDKEMGDTEIL 528 Query: 593 FRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDP 652 +R Q DY S YR ++++FDAVKIALTATPAL T +IFG+PV++YTYR AVI+G+L+D D Sbjct: 529 YRDQRDYQSKYRSVIEYFDAVKIALTATPALQTTEIFGQPVFKYTYREAVIEGYLVDHDA 588 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQGEVIN--DTLEDDQDFEVADFNRGLVIPAFNRA 710 P + T+ + G++ G+ V P I + L D+ DF+V FNR ++ FN+ Sbjct: 589 PHHLETKLSTGGIHYKSGDTVMIYDPVTGEITNSELLVDELDFDVEQFNRQVITENFNKT 648 Query: 711 VCNELTNYLDPTG---SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD- 766 V +E+ +DP KTL++ V + HADM+V LR + K + ++AI+KITG Sbjct: 649 VLSEIARDIDPENPEEQGKTLIYAVDDQHADMIVSILRDIYSKYG--VSNEAIMKITGSV 706 Query: 767 ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 + +KVQ I F E P+I VTVDLLTTG+D+P I +VF+R+V+SRIL+EQM GR Sbjct: 707 GGGNPKKVQEAIKCFKNENYPSIAVTVDLLTTGIDVPEITTLVFMRRVKSRILFEQMLGR 766 Query: 827 ATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEA 886 ATRLCP+++KT F+I+D V +Y +L V+TM+PVVV P L++ ++ E Sbjct: 767 ATRLCPKIHKTHFEIYDPVGVYDSLNDVNTMKPVVVNPTTSFTQLLDGLS--------EI 818 Query: 887 DGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRL 946 + E Q++AKLQR + + +D G + + + Sbjct: 819 NDDKQTEQQITQIIAKLQRKKRNMSP------------KMMDYFISMTDGKDPSQLIMEI 866 Query: 947 REKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQD 1006 + + ++ K +++ K N + + D +DE+ YG+ + P+D Sbjct: 867 EKSDVQEAKKLLFKYRDVFKMMQETKA---NGSRPVVVSDAEDELTEHSRGYGNAEKPED 923 Query: 1007 FLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRN 1066 +L AF +Q + N AL + RP+DLTRK L +L+ DR+ F L A E N Sbjct: 924 YLNAFSRYIQSNQNKIAALNIICTRPKDLTRKDLKDLRLTLDREGFTTQQLNTAIYELTN 983 Query: 1067 EDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVV 1126 E+I A +I IRR A+G L E R+ A+ +++ ++++S ++ SW+ R+ + L + + Sbjct: 984 EEIMADIISLIRRYAIGSTLISHEARIHRAVEKLRKKHNFSKQEQSWISRIEKYLLGESI 1043 Query: 1127 LDDDVFKT-GNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 ++ VF + GG + + F +NL++++ + ++Y++D+ Sbjct: 1044 MNVKVFDEDSRYASYGGFNKINKVFQNNLESIVLELNEYLYDDGG 1088 >UniRef50_A6TLK4 Type III restriction protein, res subunit n=3 Tax=Clostridiaceae RepID=A6TLK4_ALKMQ Length = 1086 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 428/1183 (36%), Positives = 646/1183 (54%), Gaps = 117/1183 (9%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP---PCE 60 KSNFEFL + AE+ D N++LIK+ +FGE + L + Sbjct: 2 KSNFEFLNKTFPVLANLGSTAESYLYSDANSSLIKLGLFGETIVNLMLKLDQMEPPEYDN 61 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 + ++ L K + NI + + LR N+AVH ++ D + L +G LA+W+ + Sbjct: 62 THANRIKLLKKEGLISQNIDDIIYSLRIARNKAVHSGYDSFEDCVILLEMGHNLAIWFMQ 121 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 D+ + FVLP Sbjct: 122 TYG-DWQYAPAEFVLP-------------------------------------------- 136 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR-TLN 239 + +A +A L E +A ++ KQ + + + + A + Sbjct: 137 -------EDNSQQADFEALLKEKEELIAVLTEKVLKQKPSKTLSSKERLKRAASASEMMK 189 Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 LSE+E+R+LIDAQLRK GW+ D+ LR+SKG RP+ G N AIAEWPT G+ G+ADY Sbjct: 190 LSEKETRYLIDAQLRKVGWEVDTVNLRYSKGTRPQKGKNIAIAEWPT-NSSVGDHGYADY 248 Query: 300 VLFVGLKPIAVVEAKRNNIDVPARLN-ESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VLF+GLK + ++EAKR +D+P+ L+ + Y+K + + Sbjct: 249 VLFIGLKLVGIIEAKRMFLDIPSVLDYQCKDYAKNIKDEHAEYMI--------------- 293 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 +K P ++TNGR+Y ++TKSGIW+ DVR N+ KA W P+ Sbjct: 294 --------DSWGEYKAPLLFATNGRKYLKQLETKSGIWFLDVRKPANIPKAQQGWMSPDG 345 Query: 419 LLEMLGSEPQKQNQWFADNP-----GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 +LE+L + + N + P L LR YQ DA+ A EKAI++G+Q LL+MAT Sbjct: 346 ILELLEKDIEAANASLEELPYDLLRDKDGLNLREYQIDAIEAAEKAIIEGKQTALLSMAT 405 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKG 532 GTGKTRT + M++R +++ RFKRILFLVDR +LGEQA F++ ++ T + I++IK Sbjct: 406 GTGKTRTVLGMIYRFLKTGRFKRILFLVDRSALGEQAQDVFKEVKLEDLMTLDEIYNIKN 465 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVA--RYDCIVVDEAHRGYILDKEQTEGE 590 L D+ + TKI VATVQSLVKR L + + + YD IV+DEAHRGYILDKE E E Sbjct: 466 LEDRMIDKETKIQVATVQSLVKRILDNQDETMPSIIDYDLIVIDEAHRGYILDKEMDEDE 525 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQ 650 + +R+Q DY+S YR ++++FD+VKIALTATPALHT +IFG+PVY YTYR AV++G+L+D Sbjct: 526 ILYRNQDDYISKYRAVIEYFDSVKIALTATPALHTSEIFGKPVYNYTYREAVVEGYLVDH 585 Query: 651 DPPIQIITRNAQEGVYLSKGEQVERISPQGEVI--NDTLEDDQDFEVADFNRGLVIPAFN 708 D P I+T+ ++EG+ KGE V P I +D LED+ F+V FNR ++ +FN Sbjct: 586 DAPHTIVTKLSKEGINYEKGETVAIYDPVTGEIMNSDELEDELKFDVEKFNRQVITESFN 645 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD-A 767 R V E++ LDP G KTL++ V ++HAD++V+ L+ F+ +++DAI+KITG Sbjct: 646 RTVLIEISKELDPEGEGKTLIYAVDDSHADLIVKILKEIFEPYG--VDNDAIMKITGSVG 703 Query: 768 DKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 + +KV + RF E+ PNI VTVDLLTTG+D+P I +VF+R+V+SRIL+EQM GRA Sbjct: 704 GGNKKKVLEAVKRFKNEKYPNIAVTVDLLTTGIDVPEITTLVFMRRVKSRILFEQMMGRA 763 Query: 828 TRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEAD 887 TRLCPE+ KT F+I+D + +Y +L+ V+TM+PVV P + L+ + T K Sbjct: 764 TRLCPEIGKTHFEIYDPIGVYESLQPVNTMKPVVANPSTSFEDLLTGLEVLPTEK----- 818 Query: 888 GRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLR 947 ++ + ++AKLQR + + + G + F +++ Sbjct: 819 ---QIKNQIDMIIAKLQRKKRSMNE------------KTMAHFIDLSGGQDPTEFIGKIK 863 Query: 948 EKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDF 1007 + E K L K N+ A + D +DE++S YG+ P+D+ Sbjct: 864 GMSAEDAKEHIIKNKKLFDML---KEGTNDPRRAVVISDKEDELLSHTRGYGEGKKPEDY 920 Query: 1008 LEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNE 1067 LE F + + + N AL V RP++LTR L L+ DR F E L AWKE +N+ Sbjct: 921 LEEFKTFITNNFNKIVALNIVCTRPKELTRDSLKSLKLELDRHMFTEQQLNTAWKEVKNQ 980 Query: 1068 DIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVL 1127 DIAA +I IR+ A+G L EER+ +A+ R+K +D++ +L W++R+ + L + +L Sbjct: 981 DIAADIISFIRQQAIGSTLLSHEERIKNAVDRLKKNHDFNKMELGWIERIEKNLLLESIL 1040 Query: 1128 DDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 D F+TG+F GG + + F + LD ++ + ++Y++D+ Sbjct: 1041 DQATFETGSFKTAGGYNKINKIFKNQLDDIIQELNEYLYDDGG 1083 >UniRef50_C6JN68 Type I restriction enzyme EcoKI subunit R n=4 Tax=Fusobacterium RepID=C6JN68_FUSVA Length = 1088 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 412/1175 (35%), Positives = 625/1175 (53%), Gaps = 106/1175 (9%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL--LNIPPCENQ 62 +NF+FLK + I AE DPNT +IK+R GE AK + + LN P +Q Sbjct: 3 TNFQFLKKDWNILAKIGEMAEYTLHKDPNTAIIKIRQLGEYIAKSMLKVEKLNEPESGSQ 62 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 D ++ L + ++I ++ +R+ GN AVH + ++A+ L L +L W+ + Sbjct: 63 LDRIKILKTYDLIPEDIENILQLIRKKGNTAVHNMSGNESEAETLLSLVVKLCGWFNEIY 122 Query: 123 TKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYI 182 DY F + E + K+ E+ + + + + + + Sbjct: 123 GSDYSFNSESVQYKKP-------ERVDYKEAYEKLLSKVQEEKKKFDEL----------- 164 Query: 183 AILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSE 242 +L+ +T +ER K K+++ L+E Sbjct: 165 ---------------------------VPEQLSFRTSEERIKLIKN------KKSVELTE 191 Query: 243 EESRFLIDAQLRKAGWQADSKTLRF-SKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 EE+R LID QLR AGW+AD+ L + S PE AIAEWP K E G G+ DY L Sbjct: 192 EETRALIDQQLRDAGWEADTIKLNYKSNKTMPEKSRFMAIAEWPCIK-EDGKNGYVDYAL 250 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 F G +EAKR +DV R S+ + G +P+ Sbjct: 251 FYGNTLYGTLEAKRKKVDVGNA---LKRESRMYSKG----------------VIIPDGIK 291 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 + +K PF +S+NGR Y + KSGIW+ D R +N KAL ++ P +L E Sbjct: 292 LCDEAPFLGEYKAPFMFSSNGRAYNKELIDKSGIWFLDGRRQKNAPKALKGFYSPRDLKE 351 Query: 422 MLGSEPQKQNQWFADNP-----GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 +L + N+ D P S LGLR YQ +AV+AVE+A++KGQ ++LL MATGTG Sbjct: 352 LLAKDEMLANKLLQDEPMEYLKSKSGLGLRNYQIEAVKAVEEALIKGQNKVLLTMATGTG 411 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDIKGLTD 535 KTRTA+A+++RL++S+++ RILF+VDR SLGEQA F++ +++ + I+DIKGL D Sbjct: 412 KTRTALAILYRLLKSKKYNRILFVVDRASLGEQAKDTFDNVKVDQQLKISEIYDIKGLKD 471 Query: 536 KFPEDSTKIHVATVQSLVKRTLQ-SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 K PED+TKIHVATVQ L+KR L +D+ + V +YDCIV+DEAHRGYILD+ TE E F Sbjct: 472 KKPEDTTKIHVATVQGLIKRVLYSNDDAITVGQYDCIVIDEAHRGYILDRIPTEEEAFFN 531 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPI 654 + +Y S YR ++D+F+A KIALTATPA+HT +IFGEPVY+Y+YR AV+DG L+D +PP Sbjct: 532 DEKEYQSKYRSVIDYFEADKIALTATPAVHTYEIFGEPVYQYSYRQAVLDGNLVDFEPPY 591 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGEVIN--DTLEDDQDFEVADFNRGLVIPAFNRAVC 712 +IITR + +G++ KG +++ + + I L+D+ DF+V FN ++ FNRAVC Sbjct: 592 RIITRLSSDGIHFEKGSEIKVFDSETQEIKVIKDLKDELDFDVDKFNTKVITEGFNRAVC 651 Query: 713 NELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKK-KYPQLEHDAIIKITGDADKDA 771 + L NY++P G +KTLVF T+ HADM+V LR F K + + +D I KITG Sbjct: 652 SALVNYINPEGPEKTLVFAATDEHADMLVRILREEFDKLEMYSMNNDMIEKITG----SV 707 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 + V +I +F E P I VTVDLLTTG+D+P ICN+VFLRKVRSRILYEQM GRATRLC Sbjct: 708 KDVDKLIKKFKNENYPTIAVTVDLLTTGIDVPKICNLVFLRKVRSRILYEQMIGRATRLC 767 Query: 832 PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSF 891 E+NK FKI+D VDIYS L+ M+PVV PK+ L+ L+ ++ + Sbjct: 768 EEINKEYFKIYDAVDIYSDLKDYTDMKPVVADPKINLKKLLGDLDKIDGNDKNIGYLLDE 827 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP 951 ++ ++++ ++ + + + + L+ Sbjct: 828 VIGRIQRKKNRIKKAGS-------------DHLKTFSGYMRGEEISDIDEYIDYLKNTPK 874 Query: 952 HWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAF 1011 E K F+ L+ LK + + DE+ +K +G + P+D+LE F Sbjct: 875 EKIYETLMKEKKFLLHLDGLKIA----EKEKVIYEHTDEIKYIKQDFGKAERPEDYLEGF 930 Query: 1012 DSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAA 1071 + S + A++ + P+D + L E+ + D + + +++L A+K+ +NEDI A Sbjct: 931 RKYILNSSDKIEAIKILKKSPQDFKKTDLEEITKILDLEGYSKANLNAAYKQVKNEDILA 990 Query: 1072 RLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDV 1131 ++ I+ A G + EE+++ + +IK +WS +Q + L+R+ L+ L + Sbjct: 991 DMLTFIKNAIYGSPIIDREEKINDVMIKIKRLKNWSPKQKTILERIESLLRSDGYLTKED 1050 Query: 1132 FKTGNFHR-RGGKAMLQRTFDDNLDTLLGKFSDYI 1165 F+ G GG + + + + LD +L S I Sbjct: 1051 FEGGILKETYGGYSKVDKNLEGMLDEILNVISKEI 1085 >UniRef50_Q26D94 Type I restriction-modification system, R subunit n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26D94_9BACT Length = 1070 Score = 749 bits (1933), Expect = 0.0, Method: Composition-based stats. Identities = 389/1175 (33%), Positives = 599/1175 (50%), Gaps = 121/1175 (10%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE-NQH 63 S+F FLK + IA +E DP+++L K R+ E ++ + + Q Sbjct: 2 SHFNFLKDDYPTLFVIAELSEQLIHVDPSSSLSKTRLLAEKMSQLIWDFEQMGDFNGTQL 61 Query: 64 DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLVT 123 D L L + + I +FH +R+ GNQA H + A+ L+ F+L+ W+Y Sbjct: 62 DRLNRLAYSNILPEVIEGIFHTIRKSGNQASHYGTGSFDQAKFILKKTFKLSKWFYETYE 121 Query: 124 KDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIA 183 D+ L Sbjct: 122 NDF---------------------------------------------------LELPAY 130 Query: 184 ILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEE 243 L E + Q +L LE QL + A++ K + ++ R ++L+E Sbjct: 131 ELPVVVDERAHELQGQLDFLEQQLQDYKAKIEKLNSSKEVQETRKSRSNKSARNIDLNEH 190 Query: 244 ESRFL-IDAQLRKAGWQADSKTLRF-SKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 ++R L ID L+KAGW+ D+ L + + PE G N AIAEW + +ADY L Sbjct: 191 DTRILLIDPALKKAGWEVDTDLLNYKTHKTLPEKGRNMAIAEWYC------DGKWADYAL 244 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 FVG +VEAKR D+ L +S Y++ + E L Sbjct: 245 FVGTTLYGIVEAKRYRSDISTDLRQSKIYAERVTDAQDIERL------------------ 286 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 +K+PF +STNGRE+ +KTKSGIWY D+R N + AL W P+ L+E Sbjct: 287 -----GNWHGYKVPFLFSTNGREFLEQLKTKSGIWYLDIRKKDNHAAALKGWFSPQGLVE 341 Query: 422 MLGSEPQKQNQWFADNP-----GMSELGLRYYQEDAVRAVEKAIVK--GQQEILLAMATG 474 + + + N + + L LR YQ DA++ VEK I++ +Q LL MATG Sbjct: 342 LYERDIDESNDRLEKSDYDYLADKTGLSLRDYQIDAIKKVEKKIIERPEEQRSLLVMATG 401 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING-DTFNSIFDIKGL 533 TGKTRT I + +RLI+S RFKRILFL DRR L QA+G ++D +I +TF ++ ++ L Sbjct: 402 TGKTRTVIGLSYRLIKSDRFKRILFLTDRRMLATQAIGNYQDNKIENLNTFADVYQLEEL 461 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 D P+ T++H ATVQS+VKR +++P+P+ YDCI++DEAHRGY LDKE E +L F Sbjct: 462 KDTTPDGETRLHFATVQSMVKRLFYNEDPLPIDSYDCIIIDEAHRGYNLDKEIDEDDLSF 521 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPP 653 + Q DYVS Y++++++F+A I LTATPALHT QIFGEPV+ Y+YR AV+DG LID +PP Sbjct: 522 KDQDDYVSQYKKVIEYFNAYIIGLTATPALHTTQIFGEPVFSYSYRQAVLDGHLIDYEPP 581 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQGEVIND--TLEDDQDFEVADFNRGLVIPAFNRAV 711 I T+ EG+ KGE+ + +P+ I + L+D+ FE+ FN+ ++ FNRAV Sbjct: 582 YNIKTKLNSEGIVWKKGERPKAYNPETGKIEELAALDDELKFEIDQFNKLVITEPFNRAV 641 Query: 712 CNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 +L +DP +KTL+F + HAD++V+ + F ++E I KITG + Sbjct: 642 IKQLVQIIDPESEEKTLIFAARDEHADLIVKIFKEEFDAIGCRVEQGTIEKITGKSYNP- 700 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 Q + T+F E+ P I VTVDLLTTG+D+P I N+VFLR+VRSRILYEQM GRATR C Sbjct: 701 ---QELTTQFKNEKFPTIAVTVDLLTTGIDVPKITNLVFLRRVRSRILYEQMVGRATRKC 757 Query: 832 PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSF 891 E+NK FKI+D V +Y LE +RPV P++ Q L E+ D Sbjct: 758 DEINKEVFKIYDAVRLYEALEDFIQIRPVS-DPRISFQQLAQEME--------HIDNDDR 808 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP 951 A+ ++++AK Q ++V R +EL +A G + + + Sbjct: 809 AQRQMQKIIAKFQVKKR-----------QIEKVDRNEELQYNAQGKTADELLNIFKNAQG 857 Query: 952 HWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAF 1011 A + + L++ + D +DE ++++ +G+ P D++E+F Sbjct: 858 SEVATIIEEYGSLWKFLDQ----KFTRPGMQMVADQEDEFIAMEQKFGEAQKPGDYIESF 913 Query: 1012 DSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAA 1071 + + N A++ ++ P L R L EL+ D+ F E L AW++++NEDIAA Sbjct: 914 NHYIATHRNKVLAIKTILTSPNSLDRTSLKELKMMLDQDGFNERYLNAAWRQSKNEDIAA 973 Query: 1072 RLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDV 1131 ++ +IR AA+G+AL E+R+ A ++K ++++ QL WL R + + VL + Sbjct: 974 DIVSYIRTAALGEALVAHEDRIKSAFAKVKQSKNFNALQLKWLTRFEAQMLAETVLTKED 1033 Query: 1132 FKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 F GG + + F + ++ ++ +++++ Sbjct: 1034 LDKEPFKSDGGFKRINKQFQEEVEQVIDSINNHLY 1068 >UniRef50_A8YW16 Type I restriction modification system n=1 Tax=Lactobacillus helveticus DPC 4571 RepID=A8YW16_LACH4 Length = 1070 Score = 745 bits (1922), Expect = 0.0, Method: Composition-based stats. Identities = 382/1180 (32%), Positives = 588/1180 (49%), Gaps = 130/1180 (11%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE-NQH 63 SNF +A +AE+ DP ++L FGE + + L + E NQ Sbjct: 2 SNFNTSDKNYHEYAKLASSAESLIFSDPRSSLTVFGTFGEQLTREIMHLDGLGDWELNQK 61 Query: 64 DLLRELGKIAF-VDDNILSVFHKLRRIGNQAVHEYH--NDLNDAQMCLRLGFRLAVWYYR 120 + ++ D +L ++RR N A H+ A + + + W+ Sbjct: 62 ARIDKMRYSGNGYPDAVLLALDEIRRKRNGATHDNQFIATKGAALKIDQKAYLVWKWFLE 121 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 + + VP +V P N+ + Sbjct: 122 SFSLN---DVPEYVTPVDQRNILKSQ---------------------------------- 144 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 ++ ALE ++ + + T + + + + L Sbjct: 145 ----------------ADKIKALEEKIKQLQENRPQITISAEERTRRRKVNVQFAKKHPL 188 Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKG-ARPEPGVNKAIAEWPTGKDETGNQGFADY 299 +EEE+R LID+QLR AGW+AD+ L K P+ G + AIAEW + ADY Sbjct: 189 NEEETRQLIDSQLRNAGWEADTPRLNNWKHQTEPQKGHSMAIAEWVLPNGQ-----RADY 243 Query: 300 VLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 LF GL +VEAKR + D+ ++ + Y+K VP Sbjct: 244 ALFKGLDFYGIVEAKRWDQDIAGQMAQPKEYAKE----------------------VPFR 281 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 +K+PF Y+ NGR Y K KSGIW+ D R+ + + AL E+H PE+L Sbjct: 282 SDYHLIGQEMGDYKVPFIYAANGRPYLEQYKEKSGIWFWDARNPKENAYALEEFHTPEDL 341 Query: 420 -LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 L++ + N+ AD+ + R YQ DA++++E AI G++ ILLAMATGTGKT Sbjct: 342 ALKLTAKNKDEANKDLADDEDYPQFAARPYQLDAIQSLENAIKDGKKRILLAMATGTGKT 401 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP 538 RTAI++M+RL++ +R +RIL+LVDR SLG Q A +D +I + +SI+ +K L+DK P Sbjct: 402 RTAISLMYRLLKHKRARRILYLVDRNSLGRQTANAIKDNKIGTMSISSIYGLKELSDKVP 461 Query: 539 EDSTKIHVATVQSLVKRT---LQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 + STKI +ATVQ ++KR + E V +YD I+VDEAHRGY D+ ++ E + Sbjct: 462 DASTKIQIATVQGMIKRLFFNDDNSEKPSVGQYDFIIVDEAHRGYAEDRGLSDQEYENYD 521 Query: 596 QLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 Q +YVS YRR++D+FDA I +TATPAL T +IFG PVY Y+Y+ AV+DG+L+D D P+ Sbjct: 522 QEEYVSQYRRVVDYFDATAIGMTATPALQTTEIFGNPVYSYSYQQAVLDGYLVDHDAPVI 581 Query: 656 IITRNAQEGVYLSKGEQVERISPQGE-VINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 I T+ A+EG++ KG +V+ + + + + L D+ +F++ DFN ++ P+FN+ VC+E Sbjct: 582 IQTKLAKEGIHFKKGAEVDVFNQDEKTIDKEKLPDNMNFDIKDFNHRVITPSFNKVVCDE 641 Query: 715 LTNYL---DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 L KTL+F T+ HADMVV+ L+ AFK ++ DAI KITG Sbjct: 642 LVRNYLDPTDRDGGKTLIFAATDEHADMVVDLLKKAFKDDGRPVDDDAIEKITGSI---- 697 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 R I F E PNIVVTVDLLTTGVD+P+I NIVFLR+V+SRILYEQM GRATRLC Sbjct: 698 RHPNQEIRNFKNEDYPNIVVTVDLLTTGVDVPAITNIVFLRRVQSRILYEQMLGRATRLC 757 Query: 832 PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSF 891 PE++K F+IFD V IY + V M+PVV P + ++ D + Sbjct: 758 PEIHKDKFRIFDAVGIYDAMNKVTNMKPVVQNPGHNVNYFLHHKEDYFEIAEDSHQYQVD 817 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP 951 + E+ + +L ++ + A + + +A +L + Sbjct: 818 MAGAVERKIKRLDDQGR-------------------NKFERLAEIPSVDEWAGKLSKMS- 857 Query: 952 HWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD-YDTPQDFLEA 1010 A+ + P F +L+++ + DEV+ YG + P+D++++ Sbjct: 858 --KADFMKQWPKF-EQLDQVHPA-----KKQFISNEQDEVIGTTRGYGQGNNKPEDYIDS 909 Query: 1011 FDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIA 1070 F+ V+ + N PALQ V RP+DLT L +++ ++ F+E+ L+ AWK T++E Sbjct: 910 FNKFVKENVNVIPALQIVATRPKDLTFDELKDIKLKLEQNGFKENDLQSAWKTTKHEQTT 969 Query: 1071 ARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDD 1130 A +I IR+AA G L + R+ +A+ ++ G DW+ Q WL R+ L VL D Sbjct: 970 ADIISFIRQAASGSKLVDHDVRIHNAMQKVYGMADWNIMQKKWLKRIENQLLSSTVLGPD 1029 Query: 1131 ---VFKTGN-FHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 F F R+GG +++ F D ++ ++ ++ Sbjct: 1030 AEHAFDDNFYFKRQGGYKQIKKIFPKYADQIIYVLNENLY 1069 >UniRef50_C3WJB8 Type III restriction protein n=2 Tax=Fusobacterium RepID=C3WJB8_9FUSO Length = 1085 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 389/1178 (33%), Positives = 616/1178 (52%), Gaps = 115/1178 (9%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCENQ-- 62 SNF FL+ I AE DPNT ++K+R FGE + + N + Sbjct: 3 SNFNFLQNDWQGLAKIGEMAEYILYKDPNTAIMKLRQFGEELINTMIKIENFSCDKTTLA 62 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 D + L + + D+I ++ H LR+ GN+A H + D A+ L L +L W+ + Sbjct: 63 VDKILILKRAGLIPDDIDNILHSLRKKGNKAAHGAYGDEKTAETLLSLAVKLGAWFQEIY 122 Query: 123 TKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYI 182 D F + E + +++ ++ V + Q E Sbjct: 123 GTDMSFHSETIEYKKP-------ENIDYEKEYQKLVERTDEIQKE--------------- 160 Query: 183 AILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSE 242 L + T ++RK + KR + +E Sbjct: 161 ------------------------LEDIKTNPHLTTREDRKKAISK------KREIEFTE 190 Query: 243 EESRFLIDAQLRKAGWQADSKTLRF-SKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 EE+R +ID QL +AGW+ D+K L + + PE N AIAEWP K E G +GFADY L Sbjct: 191 EETRLIIDKQLAEAGWEVDTKVLNYKTNKTLPEKKKNLAIAEWPCIK-ENGRKGFADYAL 249 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 F+G K ++EAKR N D+PA LN S Sbjct: 250 FLGEKLYGILEAKRLNTDIPAALN--------------------ADSRIYSKGVEIFENA 289 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 + S +K PF +S+NGR Y + KSGIW+ D R N+ K L ++ P++L E Sbjct: 290 QLCEGSPFGEYKAPFLFSSNGRGYNKDLPEKSGIWFLDARKESNLPKVLKGFYSPKDLKE 349 Query: 422 MLGSEPQKQNQWFADNPGMSE-----LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 +L + + NQ + LGLRYYQ+DA+++VE++++ G++++LL MATGTG Sbjct: 350 LLEKDDELANQKLKEESFEYLESKFGLGLRYYQKDAIKSVEESLISGKKKVLLTMATGTG 409 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDIKGLTD 535 KTRTA+ +++RL+++ +FKRILF+VDR LGEQA F+D +I + I+ +KGL D Sbjct: 410 KTRTALGLIYRLLKTNKFKRILFVVDRTLLGEQAKETFDDVKIEQLLSLGGIYGVKGLND 469 Query: 536 KFPEDSTKIHVATVQSLVKRTL----QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGEL 591 K + ++H+ATVQSL+KR L + E + V YDCI+VDEAHRGYILD+ E + Sbjct: 470 KSTDKDERVHIATVQSLIKRILYPNTEEKEKLTVGEYDCIIVDEAHRGYILDRNMKEEQK 529 Query: 592 QFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQD 651 F + D+ S Y+ ++D+FDAVKIALTATPALHT +IFGEPVY Y+ AVIDG+L+D + Sbjct: 530 DFFDEKDFESKYKAVIDYFDAVKIALTATPALHTQEIFGEPVYSYSCSQAVIDGYLVDVE 589 Query: 652 PPIQIITRNAQEGVYLSKGEQVERISPQGEV--INDTLEDDQDFEVADFNRGLVIPAFNR 709 PP +IIT+ ++EG++ KG V+ + + + L D+ DF++ FN+ ++ +FNR Sbjct: 590 PPYEIITKLSEEGIHYQKGAMVKVYDVEAQKVKEREVLADELDFDIEKFNKSVITESFNR 649 Query: 710 AVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYP-QLEHDAIIKITGDAD 768 VC+ L +Y++P G +KTL+F ++ HADMVV LR ++K+ + + I K+TG Sbjct: 650 EVCSALVDYINPEGPEKTLIFTASDEHADMVVRILREEYQKQAMFDMNIEMIAKMTG--- 706 Query: 769 KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 + V ++ +F E P I VTVDLLTTGVD+P I N+VFLRKV+SRILY QM GRAT Sbjct: 707 -YVKDVDHLVKKFKNEAYPTIGVTVDLLTTGVDVPRITNLVFLRKVKSRILYHQMLGRAT 765 Query: 829 RLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADG 888 R C E++KTS+K+FD Y ++ M PVV P+++++ L++ + + Sbjct: 766 RKCDEIDKTSYKVFDAARNYVDMKDFSDMNPVVNNPQIDMEKLLDSYSKDVPDES----- 820 Query: 889 RSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLRE 948 ++ EQ++A+LQR + I+ ++ R ++ N + + ++ Sbjct: 821 ---KKYFIEQVIARLQRKKKRIKDLGENKFEINSKIYR-----KNEDIKNIDDYIEYIKN 872 Query: 949 KGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFL 1008 P + K F+ L+ I N I + +DEV +V+ +YG + P+D+L Sbjct: 873 INP----DDMEKEEDFLIFLDS----IQNPKKDRIISEHEDEVRTVRQIYGKNEKPEDYL 924 Query: 1009 EAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNED 1068 E F+ ++ + + AL+ + P+ RK L EL+ D ++E+ L A+ + N + Sbjct: 925 ENFEKYIRENQDKVEALKLLKENPKLFKRKDLKELRYILDENGYKETELNSAYGKVENVN 984 Query: 1069 IAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLD 1128 I A ++ +I++ G + EE++ RIK +W+ QL ++++ L+E L Sbjct: 985 ITADILSYIKKVLKGSTILDKEEKIQDIEKRIKRLKNWNPIQLKIIEKIISQLRENSYLT 1044 Query: 1129 DDVFKTGNFHRR-GGKAMLQRTFDDNLDTLLGKFSDYI 1165 ++ F +G F GG + + +D L ++ ++ I Sbjct: 1045 EEDFSSGIFKDNFGGYNKINQKLEDKLADIVSIINEEI 1082 >UniRef50_C0XBA4 Type I restriction enzyme EcoKI subunit R n=6 Tax=Bacilli RepID=C0XBA4_9LACO Length = 1086 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 390/1179 (33%), Positives = 587/1179 (49%), Gaps = 130/1179 (11%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE-NQH 63 SNFE K +A +AE+ DP +++ F E + + L Q Sbjct: 20 SNFETTKKDYQQYAKLATSAESLIYSDPKSSVAIFGNFAEQLTREIMHLEGFGDWNLKQI 79 Query: 64 DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYH--NDLNDAQMCLRLGFRLAVWYYRL 121 D + EL A + +RRI N A H++ A + + ++ + Sbjct: 80 DRINELKYRADYPPVVTKYLDDIRRIRNLADHDHQFVVSKKQALEIDKKAHLIWSYFLEV 139 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 ++D + P Sbjct: 140 YSQD---NPAKYQTPVD------------------------------------------- 153 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNA-ELAKQTEQERKAYHKEITDQAIKRTLNL 240 Q +AQ LEA L +N E++K+ ++R+ + L Sbjct: 154 ---QANIFQVQQAQIDQLKKELEAALNSQNPLEVSKEIREQRRKVSVNFA-----KKHQL 205 Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSK-GARPEPGVNKAIAEWPTGKDETGNQGFADY 299 +E E+R LID QL++AGW+AD++ L K P+ G N AIAEW + ADY Sbjct: 206 TEAETRQLIDKQLQEAGWEADTEKLNNWKFKTEPKKGHNMAIAEWVLPNGQ-----RADY 260 Query: 300 VLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 LF GL+ +VEAK+ + D+ ++ + YS+ VP Sbjct: 261 ALFKGLEFYGIVEAKKWDQDIAGQMAQPKEYSRE----------------------VPFR 298 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 + +K+PF Y+ NGR Y K KSGIW+ D R+ + + AL E+H PE+L Sbjct: 299 SDYLLVDNQMGDYKVPFIYTANGRPYLKQYKEKSGIWFWDARNPKENAYALEEFHHPEDL 358 Query: 420 -LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 L++ P + NQ D+ + R YQ +A++++E+AI G++ ILLAMATGTGKT Sbjct: 359 ALKLTAQNPDEANQDLVDDQDFPKFANRDYQVEAIKSIEEAIKDGKKRILLAMATGTGKT 418 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP 538 RTAIA+M+RL++ +R +RIL+LVDR SLG+Q A +D +I + ++I+ +K L DK P Sbjct: 419 RTAIALMYRLLKHKRARRILYLVDRNSLGQQTADAIKDNKIGNLSISNIYGVKELKDKLP 478 Query: 539 EDSTKIHVATVQSLVKRTLQSD---EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 + STKI +ATVQ ++KR +D E V +YD I+VDEAHRGY D+E ++ E +F Sbjct: 479 DASTKIQIATVQGMIKRLFYNDSNEEKPSVGQYDFIIVDEAHRGYAEDRELSDKEYKFYD 538 Query: 596 QLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 Q DYVS YRR++D+FDA I +TATPAL T IFG+PVY Y+Y+ AV+D +L+D D P Sbjct: 539 QNDYVSQYRRVVDYFDATAIGMTATPALQTTDIFGQPVYSYSYQQAVLDNYLVDHDAPTI 598 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVIN-DTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 I T+ +QEG++ KG + + E I + L D+ +FEV DFN+ ++ +FNR VC+ Sbjct: 599 IKTKLSQEGIHFKKGAGINLFDQESESIRSEKLPDNMNFEVKDFNKRVITESFNRVVCDY 658 Query: 715 LTNYLDPTGS---QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 L KTL+F T+AHADMVV L+ AFKK +E DAI KITG Sbjct: 659 LAQNCLNPNDPELGKTLIFAATDAHADMVVRLLKEAFKKAGNPVEDDAIEKITGSI---- 714 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 R I F E+ PNI VTVDLLTTG+D+P I N+VFLR+V+SRILYEQM GRATRLC Sbjct: 715 RHPNNEIKLFKNEKHPNIAVTVDLLTTGIDVPEITNLVFLRRVQSRILYEQMLGRATRLC 774 Query: 832 PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSF 891 P ++K+ F I+D V IY + V M+PVV ++ V + I+E Sbjct: 775 PGIHKSVFNIYDAVGIYDAMNKVTNMKPVVKNVTHDVHYFVKRKDEFGISDISEQYQID- 833 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP 951 L A + R I + + ++ +D+ +D ++ F + + Sbjct: 834 -------LAAAVDRKIKRMNDTKRKDFERLTEIASIDQWARDLIHLDRKEFLDQWKN--- 883 Query: 952 HWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYG-DYDTPQDFLEA 1010 I +L+KL D DE + + YG + P+D++E+ Sbjct: 884 -------------IEQLDKL----QGNTQKQYISDAPDEYLGTERGYGEENSNPEDYIES 926 Query: 1011 FDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIA 1070 F+ V+ N PALQ V RP+DLT L +++ +++ F+E L+ AWK Sbjct: 927 FNKFVKEHVNTIPALQIVATRPKDLTYDELKKIKLELEKKGFKEHDLQSAWKSANQVQTT 986 Query: 1071 ARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDD 1130 A +I IR+AA+G L + R+ +A+ ++ G DW+ Q SWL ++ L VL + Sbjct: 987 ADIISFIRQAALGSKLVDHDVRIHNAMQKVYGMADWNMVQKSWLKKIENQLISSTVLGPN 1046 Query: 1131 ---VFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 F + F R+GG +++ F DN D ++ ++ ++ Sbjct: 1047 AETAFSSNFFKRQGGYKQMRKIFSDNADQIIYVLNENLY 1085 >UniRef50_C7D879 Type I restriction enzyme, R protein n=1 Tax=Thalassiobium sp. R2A62 RepID=C7D879_9RHOB Length = 1131 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 266/1261 (21%), Positives = 440/1261 (34%), Gaps = 239/1261 (18%) Query: 7 FEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIPPCENQH 63 F FL A AE DP R+ E K L L P + Sbjct: 4 FAFLTTDFPDLKQHAEKAEKLALSDPRGACFWARLTLETAVKWLYRRDRSLRNPYDQTLA 63 Query: 64 DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN--DLNDAQMCLRLGFRLAVWYYRL 121 L+ E A I + ++ GN+A H+ DA +R F + W R Sbjct: 64 ALIAEPSLTALTGPAITTKAKYIKDQGNRAAHDSGKPLTAKDAAATVRELFHVCYWIART 123 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 + +LE+ + A T A+++ + + A N Sbjct: 124 YATGPKPDPA---------------LTFDLAKLEKSLTISASTVAQIQNIEADVKAANKR 168 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 A E E ++ L A+EA+LA+ AE+A +QAI + Sbjct: 169 AADAE----EARKSSEDGLKAVEAELAQLRAEVAATKN----------ANQAIPDDHDYG 214 Query: 242 EEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGNQGFADY 299 E E+R ID L +AGW D R E+P G GF DY Sbjct: 215 EAETRDAFIDLLLHEAGWPLDQTRDR----------------EFPVKGMPNQSGDGFVDY 258 Query: 300 VLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ KP+AV+EAKR D ++ Y+ C + + R Sbjct: 259 VLWGDDGKPLAVIEAKRTKKDSRTGQQQAKLYADCLEAQYGRR----------------- 301 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P ++TNG E+ W D D + + + + + E Sbjct: 302 ----------------PVMFTTNGYEH----------WLWD--DAQYPPRPVSGFLKKAE 333 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKG-QQEILLAMATGTGK 477 L + + D ++ R+YQ+ A+R V +A K Q++ LL MATG+GK Sbjct: 334 LELLHQRRGNVK--PLDDVKIDEDIAGRFYQQRAIRRVGEAFEKHAQRKALLVMATGSGK 391 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TRT IA++ +L+++ R KR+LFL DR +L +QA GAF+ + N + + K Sbjct: 392 TRTVIALIDQLMRANRVKRVLFLADRIALVKQAHGAFKTHLSATPSANLLE--RHDPKKN 449 Query: 538 PEDSTKIHVATVQSLVKRTLQSD---EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 ++ ++T +++ Q + +D IV+DEAHR Sbjct: 450 DHSGARVCMSTYPTMMGLIEQMKGGQKQFGPGHFDMIVIDEAHRSVY------------- 496 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGE----PVYRYTYRTAVIDGF 646 YR I ++FD + + LTATP T +FG P Y AV DGF Sbjct: 497 ------RKYRAIFEYFDCLLVGLTATPREEIDKDTYSLFGLEKGIPTDSYDLDDAVSDGF 550 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 L+ I + + +EG+ + E+ ++ E + N+ L Sbjct: 551 LVPPKT-ISVPLKFQREGIAYDQLSDDEQEEWDALEWDEEGNVPDRVESGELNKWLFNED 609 Query: 707 FNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 V L KT++F N HA +++ A YP + + Sbjct: 610 TVDKVLEHLMRNGIKVDGGDRLGKTIIFAKGNKHAQFIIDRFNA----NYPHYKGEFAKL 665 Query: 763 ITGDADKDARKVQTMITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 I D Q++I F K++ P+I V+VD+L TG+D+P + N+VF + VRS+ + Sbjct: 666 I----DYSVTYTQSLIDDFSEKDKAPHIAVSVDMLDTGIDVPEVVNLVFFKVVRSKTKFW 721 Query: 822 QMKGRATRLC-----PEVNKTSFKIFDCVDIYSTL-ESVDTMRPVVVRP----------- 864 QM GR TRLC P+ +K F IFD E+ + V +P Sbjct: 722 QMVGRGTRLCPNLFGPDEDKDEFVIFDFCQNLEFFSENPNFTDGVGTKPMGERLFATRVE 781 Query: 865 --------KVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDR 916 + LV + ++ +F + + V + Q+ + + Sbjct: 782 LLDAAQEDDNPHEDLVRSVKQRLQDEVNGMPLDNFIVRAKRRSVERFQKPDSWSDLTLEA 841 Query: 917 SETIDKQV--------------RRLDELCQDAAGVNFNGFASRL----REKGPHWSAEVF 958 + V ++ D LC +A R S E Sbjct: 842 RMALTDDVAGLPSAFEDGALPAKQFDLLCLNAQLRLLQNDGGFSSLQQRIIRFASSLEEL 901 Query: 959 NKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQ-------DFLEAF 1011 +P LE + ++ + ++I + V + P+ DF++ Sbjct: 902 ENVPLVANELELILELQTDIFWEDVTVEILENVRRHLRGLAELIKPKERKIVITDFIDEI 961 Query: 1012 ------------------------DSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWF 1047 V+ + + + LT++ L EL Sbjct: 962 GESADIVMPDIGSGVDKARFKMKVRKFVEEHRDHITLNKV--KFGQQLTKQDLDELSAIL 1019 Query: 1048 DRQHFEESS-LRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDW 1106 + + L+ + LIG R AA A + Sbjct: 1020 VSEGVTDQETLKNLDDDGGLGPFLRSLIGLDRAAA------------KDAFGGFTSLHRL 1067 Query: 1107 SSEQLSWLDRLAQALKEKVVLDDDVFKTGNF---HRRGGKAMLQRTFDDNLDTLLGKFSD 1163 S++Q +LD + +L E +++ F F +G + R + ++ +D Sbjct: 1068 SADQTEFLDLIIDSLTEGGIVEPAAFYESPFTDIDDQGIAGVFNREQAKTIVEIVRTLND 1127 Query: 1164 Y 1164 Sbjct: 1128 S 1128 >UniRef50_B0JHV9 Type III restriction enzyme res subunit n=4 Tax=Chroococcales RepID=B0JHV9_MICAN Length = 1148 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 248/1286 (19%), Positives = 457/1286 (35%), Gaps = 268/1286 (20%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLG---LLLNIPPCEN 61 SNF FL+ Y A AE +P + R E L L P + Sbjct: 3 SNFSFLRDQFPTIYDHASQAEGLVFSNPRASCFYTRFVLEQMVCWLYENDPYLQPPRDNS 62 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVWYYR 120 L+ E + + + ++GN A H+ D+ + F L W R Sbjct: 63 LGALIHEQTFKDNLKPGLFGKIRTIHKVGNNAAHDTSPISERDSLHLIEELFHLTYWLVR 122 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 ++ +E+ ++ ++ +++ +++L + Sbjct: 123 YYGQN------------------GRELGDIRFDRQKIPPAAPPAPKQLQDLEKRLSQSDA 164 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 + E KQ++TEA+ A A +A LA+ +QAI + Sbjct: 165 LRQLAEAKQRQTEAELAAARAERDALLAQ---------------------NQAIADRHDY 203 Query: 241 SEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 +E ++R LID L++AGW + + + P + +GF DY Sbjct: 204 NEADTRRYLIDVLLQEAGWDTKAPNATEFE-----------VWGMPIQQAGDTGRGFVDY 252 Query: 300 VLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ KP+A+VEAKR++ + N++ Y+ C + + + Sbjct: 253 VLWGDDGKPLALVEAKRSSKSPDSGQNQAKLYADCLEKDYNQR----------------- 295 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P + +NG E D + + + R E Sbjct: 296 ----------------PVIFYSNGYETYL------------WDDLTYPPRPVLGFLRKTE 327 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKG-QQEILLAMATGTGK 477 L ++ ++ ++ ++ R YQ++A+R + + + ++ LL MATGTGK Sbjct: 328 LERLIFRRSHRKR--LSNTAINEDIVGRPYQKEAIRRITETFEEKCARKSLLVMATGTGK 385 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TRTAIA++ L + R+LFL DR +L +QA AF+ + LT Sbjct: 386 TRTAIALVELLKSANWVNRVLFLADRNALLKQAYRAFQRHLPSVTVL-------HLTRSK 438 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEP---MPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 + +T Q+++ + D V +D ++VDEAHR Sbjct: 439 DVTGANVLFSTYQTMLNAIDRMDAEGRIFGVGYFDLVIVDEAHRSIY------------- 485 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDGF 646 Y I D+FDA+ + LTATP T +IF G P + Y AV DG Sbjct: 486 ------QKYGEIFDYFDALLVGLTATPRSEIDRDTYRIFQLPQGVPTFAYELNDAVRDGH 539 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTL-EDDQDFEVADFNRGLVIP 705 L+ + + + + GV S+ ER+ + + ++ E Q A FN L Sbjct: 540 LVPPKG-VTVPFKFLRTGVKYSELTPQERLDYEEKFRDEESGELPQAINAAAFNDWLFNI 598 Query: 706 AFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 L S KT++F + HA + + YP + Sbjct: 599 DTVDQALELLMQRGLKVNSGDRLGKTIIFARNHRHAQCICDRFN----SNYPHYKGHFAK 654 Query: 762 KITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 I + Q+++ F++ + P + V+VD+L TGVD+P + N+VF + V SR+ + Sbjct: 655 IIDSHDN----YAQSLLDDFSEANKEPILAVSVDMLDTGVDVPEVVNLVFFKPVFSRVKF 710 Query: 821 EQMKGRATRLCPEV-----NKTSFKIFDCVDIYSTLES---------VDTMRPVVVRPKV 866 QM GR TRLC ++ +KT F +FD + E +++ +V+ ++ Sbjct: 711 NQMIGRGTRLCQDLFGTGNHKTEFLVFDLCGNFEYFEQDIDETSQKIPESLTSRLVKHRL 770 Query: 867 ELQTLVNEITDSETYKITEADGRSFAEHSHE----------QLVAKLQRIIGLATFNRDR 916 EL T + S T + E E + + Q +A + R L + Sbjct: 771 ELATRLAPSKPSATPRAREQSSTYKVERAGDLYTSLLDALHQHIATMPRDNFLVRRRLPQ 830 Query: 917 SETI-------------------------------DKQVRRLD------ELCQDAAGVNF 939 ET D + D +L A ++ Sbjct: 831 VETFSQRQRWNNLSQEDAATIADCLAGLPNSLPNEDPLAKEFDLLCVKLQLAILKADRSY 890 Query: 940 NGFASRLREKGPHWSAE-----------VFNKLPG--------------FIARLEKLKTD 974 ++R+ + ++ R+ L Sbjct: 891 ERLRDKVRDILGQLETKPDIPMIKGQLAFIREVQDESWWTGATPSMVEGIRVRVRDLVKF 950 Query: 975 INNLNDAPIFLDIDDEVVSVKSLYGD----YDTPQDFLEAFDSLVQRSPNAQPALQAVIN 1030 I+ + D DE+ V+ + + + + ++ +++ + + N Sbjct: 951 IDRQKQQIVITDFVDEMGEVQIVDIPTHQTGFSREQYRRKVEAYIRQHQDHLAIAKLRRN 1010 Query: 1031 RPRDLTRKGLVELQEWF--DRQHFEESSLRKAWKETRN-EDIAARLIGH----IRRAAVG 1083 P LT L L+E + + + +T++ + + ++G IR AA Sbjct: 1011 LP--LTETDLSALEEMLFSAAEIESRQRFEEVFGQTKSLKLLILEIVGLDPAGIRVAAR- 1067 Query: 1084 DALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGK 1143 + A R ++S+ Q+ +++ + L + V++ F Sbjct: 1068 -------QAAKQAFARYLQGTNFSANQIRFIENIIDMLAKNGVINPGALYEPPFTD-NHP 1119 Query: 1144 AMLQRTFD----DNLDTLLGKFSDYI 1165 L F+ D + ++L F++ + Sbjct: 1120 EGLDGMFNDGEADRIVSILRSFNESV 1145 >UniRef50_Q21ZK0 Type III restriction enzyme, res subunit n=17 Tax=cellular organisms RepID=Q21ZK0_RHOFD Length = 1138 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 242/1273 (19%), Positives = 427/1273 (33%), Gaps = 257/1273 (20%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGL---LLNIPPCEN 61 SNF FL+ Y A AE D T+ R E L L +P ++ Sbjct: 2 SNFAFLQSEWSTLYGAAIKAEGMANTDARTSCFYARRTLELAVDWLYKHDPALRLPYQDH 61 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHND-LNDAQMCLRLGFRLAVWYYR 120 L+ E A D + + ++ +GN AVH DA R F W R Sbjct: 62 LSALIHEPSFKATAGDAVFTKAKLIKDLGNLAVHSTRKILPVDAVTATRELFHFCYWLAR 121 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 + + T+ Q V + + +AE++A+ +KL L Sbjct: 122 TYGQ--RARPAPDLRFVPALIPSASATATVPDPAPQSVDQLQKLEAELQARDEKLTVLLS 179 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 A L+ + ++ Q A A + A T + Sbjct: 180 NKAALDDELKQLREQVAAAKKA----------------------------NTAQPDTHDY 211 Query: 241 SEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 E E+R ID L++AGWQ ++K G G+ DY Sbjct: 212 CETETRDKFIDLLLKEAGWQLNAKNFEIEVS----------------GMPNNQGVGYVDY 255 Query: 300 VLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ +P+ +VEAKR D ++ Y+ C + + Sbjct: 256 VLWGDDGRPLGLVEAKRTRRDAKVGQQQAKLYADCLQAQYDQR----------------- 298 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P + +NG E+ W D D + + + + +E Sbjct: 299 ----------------PIIFYSNGYEH----------WIWD--DASYPPRPVQGFFKKQE 330 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIV-KGQQEILLAMATGTGK 477 L ++ ++ AD ++ RYYQ AVR + + + Q++ LL MATG GK Sbjct: 331 LELLIQRRTNRKK--LADAVINDDIVNRYYQHRAVRRIGETFELENQRKALLVMATGGGK 388 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TR +A+ L + KRILFL DR +L +QA+ AF+ + N + + Sbjct: 389 TRVVVALSDVLTRCNWAKRILFLADRVALVKQAVNAFKTHLPDSSPVNLVSERH------ 442 Query: 538 PEDSTKIHVATVQSLVKRTLQSDE---PMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 ++ V+T +++ + + V +D I++DEAHR Sbjct: 443 --ADGRVFVSTYPTMMGLIDDAADGQRRFGVGHFDLIIIDEAHRSVY------------- 487 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGF 646 YR I D+FDA+ + LTATP +T +F G P Y AV +G+ Sbjct: 488 ------QKYRAIFDYFDAMLVGLTATPKDEIDHNTYSLFDLESGVPTDVYGLDEAVAEGY 541 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 L+ I + + +EG+ + E+ ++ + A N+ L Sbjct: 542 LVPPRS-ISVPLKFQREGIKYKDLSEEEKEQWDALEWDEDGNVPDAVDSAALNKWLFNTD 600 Query: 707 FNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 V L + + KT++F NAHAD + + YP + Sbjct: 601 TVDKVLENLMSQGEKVAGGDRLGKTIIFAKNNAHADFIADRFN----VNYPHYKGAFARV 656 Query: 763 ITGDADKDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 +T Q++I F+ KE +P+I ++VD+L TG+D+P + N+VF + +RS+ + Sbjct: 657 VTYKT----EYAQSLIDEFSMKEGMPHIAISVDMLDTGIDVPEVVNLVFFKIIRSKTKFW 712 Query: 822 QMKGRATRLC-----PEVNKTSFKIFDCVDIYSTL------------------------- 851 QM GR TRLC P NK F +FD Sbjct: 713 QMIGRGTRLCLDLYGPGQNKQFFNVFDYCQNLEFFSLELPPDEGKNPVPLSTRLFRARLE 772 Query: 852 -----------ESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLV 900 + L E+ ++ + +F + V Sbjct: 773 MIAELDKRMAAGDHGATAQDAGSDDLTDGQLRGELAGFLHQQVAAMNLDNFVVRPRRKSV 832 Query: 901 AKLQRIIGLATFNRDRSETI--------------DKQVRRLD------ELCQDAAGVNFN 940 + + + + D + D++ +R D +L A +F Sbjct: 833 ERFAKRDSWHSLDADAHTELSHEVADLPTALLDNDEEAKRFDMLVLRTQLSILKASTDFA 892 Query: 941 GFASRLREKG-PHWSAEVFNKLPGFIARLEKLKTD------------------------I 975 R++ E + + ++ + +D I Sbjct: 893 TLRERMQAIASALEEQEAIPAIKAQMVLIQSVASDEWWEDVTVAMLEAARKKLRALVKLI 952 Query: 976 NNLNDAPIFLDIDDEVVS----VKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINR 1031 ++ D +DE+ + + F + ++ + + N+ Sbjct: 953 EKGKKNIVYTDFEDELGTGTTIMLPGVSTGMNLAKFKDKARQFLRAHESHLSLQRLRRNQ 1012 Query: 1032 PRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDI-AARLIGHIRRAAVGDALKPFE 1090 P LT L+EL+ + +A +++ I L+G R Sbjct: 1013 P--LTPSDLIELERMLVEAGGSTEVIEQAKEQSHGLGIFIRSLVGLDR------------ 1058 Query: 1091 ERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTF 1150 E A ++ ++ QL +++ + + L E V+D F + Sbjct: 1059 ETAKLAFSQFVVGTTATASQLEFINLIVEELTENGVMDPARLYDSPFTDINPQGPEALFL 1118 Query: 1151 DDNLDTLLGKFSD 1163 + ++ + Sbjct: 1119 PARVTEMVRVLEE 1131 >UniRef50_Q1GLF8 Type I restriction-modification system restriction subunit n=7 Tax=root RepID=Q1GLF8_SILST Length = 1130 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 260/1259 (20%), Positives = 434/1259 (34%), Gaps = 238/1259 (18%) Query: 7 FEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIPPCENQH 63 F FL A A AE+ DP R+ E K + + P + Sbjct: 4 FVFLTADFPDLLAHAKKAESAALSDPRGACFWARLTLETAIKWIYRNDPSMRSPYQDTLA 63 Query: 64 DLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHND--LNDAQMCLRLGFRLAVWYYRL 121 L+ E I++ ++ GN+A H+ DA +R F + W R Sbjct: 64 ALIAEPSLGQLTGPAIVTKARFIKDHGNRAAHDSGKPIKPQDAAAVVRELFHVCYWMART 123 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 KD + +LE+ + A T A+++A ++K A Sbjct: 124 YAKDAKPDS---------------SLQFDASKLEKTLTISASTVAQIQALKEKHDA---- 164 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 A + ++ LEA+LA+ AE+ + + + A++ + + Sbjct: 165 HAKALKDAEAAALASEEGRKRLEAELAQVRAEIKEIRQ----------ANTAVQDDHDYN 214 Query: 242 EEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGNQGFADY 299 E +R ID L +AGW D + R E+P G +G DY Sbjct: 215 EAATRDAFIDLLLNEAGWPLDQERDR----------------EFPVSGMPNDKGEGLVDY 258 Query: 300 VLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ KP+A+VEAKR D ++ Y+ C + + R Sbjct: 259 VLWGNDAKPLALVEAKRTMKDSRIGQQQAKLYADCLETMYGRR----------------- 301 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P ++TNG E+ W D D + + + + +E Sbjct: 302 ----------------PVIFTTNGYEH----------WLWD--DQMYPPRRVSGFLKRDE 333 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ-QEILLAMATGTGK 477 L+ + +++ + R+YQ+ A+R V +A + + ++ LL MATG+GK Sbjct: 334 LVLLHQRRGTRKS--LDGVSVDQGIAGRFYQQRAIRRVGEAFERDRQRKALLVMATGSGK 391 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TRT IA++ +L+++ +R+LFL DR +L +QA AF+ + N + + + Sbjct: 392 TRTVIALIDQLMRANWVRRVLFLADRVALVKQAHNAFKTHLPTAASANLLKN--HDPARN 449 Query: 538 PEDSTKIHVATVQSL---VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 +I ++T ++ + ++ +D IV+DEAHR Sbjct: 450 DHSGARICLSTYPTMLGLIDDVKGGEKQFGPGHFDLIVIDEAHRSVY------------- 496 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDGF 646 YR I D+FD + + LTATP T +F G P Y AV D + Sbjct: 497 ------RKYRAIFDYFDGLLVGLTATPREEIDRDTYSLFELERGIPTDSYDLEDAVADEY 550 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 L+ I + + ++G+ E+ +D E AD NR L Sbjct: 551 LVPPRS-ISVPLKFQRDGIDYDSLSDEEKAEWDAIEWDDEGAVPDRVEAADLNRWLFNKD 609 Query: 707 FNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 V L KT++F + HA +VE A YP Sbjct: 610 TVDKVLEHLMTNGIKVAGGDRLGKTIIFAKNSDHAKFIVERFDA----NYPHYMGQFARL 665 Query: 763 ITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 I D Q++I F++ E P+I V+VD+L TG+D+P + N+VF + VRS+ + Sbjct: 666 I----DYSVTYAQSLIDDFSEAEEAPHIAVSVDMLDTGIDVPEVVNLVFFKIVRSKTKFW 721 Query: 822 QMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLE------SVDTMRPVVVRPKVELQT 870 QM GR TR C P +K F IFD T RP+ R V Sbjct: 722 QMVGRGTRTCEDLFGPGQDKQEFIIFDFCQNLEFFNENPKITDSPTARPIGERLFVSRVE 781 Query: 871 LVNEITDSETYKITEADGRS-------------FAEHSHEQLVAKLQRIIGLATFNRDRS 917 L++ + ++ AD + F + V + Q T + D Sbjct: 782 LISALDEAGNESPLAADIKDRLHQEVLGMNLENFIVRQARRPVERFQSAEAWDTLDLDAR 841 Query: 918 ETIDKQV--------------RRLDELCQDAAGVNFNGFASR------------------ 945 + ++V ++ D L +A + G A+ Sbjct: 842 LALIEEVAGLPTAFEDGRLAAKQFDLLVLNAQLLLLRGDAAFANLQRRIVSFASALESLS 901 Query: 946 --------LREKGPHWSAEVFNKL-----PGFIARLEKLKTDINNLNDAPIFLDIDDEVV 992 L + E + + R L I + D +D + Sbjct: 902 NVPAVTQELELVLAIQTDEFWQDINVEILEDVRRRFRNLAELIQPKERKNVITDFEDSIG 961 Query: 993 SVKSLY----GDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFD 1048 + ++ G F ++ + + R LT L EL+ Sbjct: 962 TSTTIDLPEVGSGVDKVRFKTKTRKFIEAHSDHIALQKI--RRGEQLTPADLQELERMLI 1019 Query: 1049 RQHFEESS-LRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWS 1107 + + L E L G R AA + N S Sbjct: 1020 DEGVADHDVLDGLQNEGGLGVFLRSLTGLDRAAA------------KALFSDFAAANQLS 1067 Query: 1108 SEQLSWLDRLAQALKEKVVLDDDVFKTGNF---HRRGGKAMLQRTFDDNLDTLLGKFSD 1163 + Q ++D + +L E VLD F F G + T + L+ + + Sbjct: 1068 ANQTEFIDLIINSLCENGVLDPKTFYESPFTDLDDMGIMGVFSETQSAEIIRLVRETNQ 1126 >UniRef50_Q112D5 Type III restriction enzyme, res subunit n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q112D5_TRIEI Length = 1119 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 252/1260 (20%), Positives = 442/1260 (35%), Gaps = 247/1260 (19%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLG---LLLNIPPCEN 61 SNF+FLK + A AE + P + R E L L +P N Sbjct: 3 SNFDFLKPHYPKLHQTATQAETLINNAPRASCFYTRYTLEQAVIWLYENNPYLELPKTYN 62 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVWYYR 120 L+ E + +N+ + +IGN A H+ DA+ ++ + W R Sbjct: 63 LGALIHEQTFKDNLQNNLFPKLRIIHKIGNAAAHDPKPITSKDARYLIQELYHFLYWLTR 122 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 + D LP N T K L ++ +TQ + Q++ Sbjct: 123 YYSPDGKN------LPNLKFNPDLIPTSTTKSDLTLDKLQQLETQLSTAQEMQRIAE--- 173 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 + E QT A L +A+LA+ + +Q + Sbjct: 174 ----------QKEKQTTAELETAKAELAQLKQQ-----------------NQTKSDRHDY 206 Query: 241 SEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 +E ++R +L+D L++AGW TG +G DY Sbjct: 207 NEADTRTYLLDILLKEAGWPIHLPESTEY---------------QVTGMPNETGKGKIDY 251 Query: 300 VLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 V + P+A+VEAKR +++ Y+ C F Sbjct: 252 VFWGDDGNPLAIVEAKRTRKSPQTGQHQAKLYADCLQAEFNHR----------------- 294 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P + +NG E+ W D D + + + + +E Sbjct: 295 ----------------PVIFYSNGYEH----------WIWD--DFNYPPRPIQGFLKKDE 326 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 L ++ + Q ++ R YQ++A+ +++ Q++ LL MATGTGKT Sbjct: 327 LERLIFRRSHR--QPLHTLDVNPDIAGRCYQKEAICCIKEIFDNKQRKALLVMATGTGKT 384 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP 538 RTA++++ L ++ KR+LFL DR L QA G F NSI K Sbjct: 385 RTAVSIVELLERANWVKRVLFLADRNVLLTQAQGVFNS------NLNSITTANLTEKKQD 438 Query: 539 EDSTKIHVATVQSLVKRT---LQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 ++ I +T ++ R +D ++VDEAHR Sbjct: 439 AENATIVFSTYPTISNRINATDGDKRLFSPGYFDLVIVDEAHRSIY-------------- 484 Query: 596 QLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDGFL 647 YR+I +FDA+ + LTATP T IF G P + Y +A+ DG+L Sbjct: 485 -----RKYRQIFQYFDALLLGLTATPRNEVDRDTYSIFDLEPGVPTFAYELDSAIKDGYL 539 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN-DTLEDDQDFEVADFNRGLVIPA 706 + +++ + + G+ S+ + E+ + + + +T E N L + Sbjct: 540 VPPSG-VEVPFKFMRAGIRYSELQPEEKTAYEERFADAETGEVPDKINATALNTWLFNIS 598 Query: 707 FNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 L KT++F + HA+ + E A YP + Sbjct: 599 TVDQALQLLMERGLKVEGGDRLGKTIIFARNHKHAEFISERFNA----NYPHYKGQFAQI 654 Query: 763 ITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 I D + Q+++ F+ ++ P I V+VD+L TGVD+ + N+VF + V SRI + Sbjct: 655 I----DSQSSYSQSLLDDFSNADKQPIIAVSVDMLDTGVDVREVVNLVFFKPVYSRIKFN 710 Query: 822 QMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLES---------VDTMRPVVVRPKVE 867 QM GR TRLCP +KT F +FD +S E D++ +V+ ++E Sbjct: 711 QMIGRGTRLCPNLFAPGDDKTEFLVFDLCSNFSYFEQQIDEKNVKIPDSLTTKLVKSRLE 770 Query: 868 LQTLV------NEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETID 921 L LV N + D I +F H Q V + + E I Sbjct: 771 LSQLVPTGELKNNLLDELHQYINSMPKDNFLVRPHLQQVEEFSQRERWNELGESDQEIIG 830 Query: 922 KQVRRLDELCQDAAGVN--FNGFASRLREKGPHWSAEVFNKLPGFIAR------------ 967 + + L + +N F+ +L+ S + Sbjct: 831 ESLASLPNGLPKESHLNKRFDLICVKLQLALLKQSTDFIRLRDNIRDICSQLAQKSNIPM 890 Query: 968 -------------------------------LEKLKTDINNLNDAPIFLDIDDEVVSVKS 996 L +L I++ ++++ DE+ V++ Sbjct: 891 IAAKLQVIEEVQAEEWWRDITVEMVSILQQDLRELVKFIDSQEQKIMYVNFADEMGEVQN 950 Query: 997 L----YGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHF 1052 + +P + + ++ ++ + N + N P LT L L+E Sbjct: 951 VNVPTQTSGFSPLQYKKKVEAYIRSNENNVAVAKLKRNIP--LTDADLTALEEMLFNSEV 1008 Query: 1053 EESSLRKA---WKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSE 1109 E A + + +L+G R AA ++ +++ Sbjct: 1009 IEDREIFAEVYGQNISLKLFIRKLVGLDRNAA------------KELFSKYLNSK-FNTS 1055 Query: 1110 QLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTF----DDNLDTLLGKFSDYI 1165 Q+ +++ + L + V+ ++ F L F DN+ +L + ++ + Sbjct: 1056 QIRFVENIIDYLTQNGVMSPELLYEPPFTDL-HTEGLDGIFADKEADNIIEILTEINESV 1114 >UniRef50_D0SUQ0 Predicted protein n=5 Tax=Moraxellaceae RepID=D0SUQ0_ACILW Length = 1147 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 248/1264 (19%), Positives = 452/1264 (35%), Gaps = 225/1264 (17%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIPPCEN 61 SNF+FL+ A AE P +L+ R E L L P + Sbjct: 2 SNFQFLEPEFSKLALTAKEAEKLVYISPQASLMFARNSLENLVFWLYQYDKKLTQPYDPS 61 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN---DLNDAQMCLRLGFRLAVWY 118 + L+ ++ + I +R +GN AVH + + F + VW+ Sbjct: 62 LYSLITDVKFKEIIPPYIWDKMDNIRMVGNSAVHGKKFKQLTTEETVKHISHLFLIYVWF 121 Query: 119 YRLVTKDYDFPVPV--FVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLV 176 R F Q V K+QL+Q EV+A ++ Sbjct: 122 ERTYGSPTKDRSQAVLFNPKLIPNADTTQPVTANKEQLQQ----------EVKAFDKEFA 171 Query: 177 ALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR 236 + + E K E A + R E LA +A+LA++ +Q +A ++ + ++ Sbjct: 172 EQHKALREREQKLLELSASLEER----EKLLANIDADLAQKRQQVEQA---KLANSKVQD 224 Query: 237 TLNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG 295 + E+E+R L ID L +AGW+ GV TG T +G Sbjct: 225 HTDYKEDETRKLKIDLLLEEAGWEI---------------GVTAREEVPVTGMPSTSGKG 269 Query: 296 FADYVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 DYVL+ P+A+VEAKR ++D ++ Y+ C + + Sbjct: 270 SVDYVLYDANGLPLALVEAKRTSVDPEVGQQQAKLYADCLEQQTGQR------------- 316 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 P + TNG R + DV+ + + ++ Sbjct: 317 --------------------PVIFYTNGYRTR---------IWNDVQG--GPPRLVHGFY 345 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 EL ++ N P + + RYYQ A++A+ A + ++ LL MATG Sbjct: 346 TQAELKRLIERRKN--NPDLGSFPINANIVERYYQTRAIKAMLAAFQRKERAGLLIMATG 403 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLT 534 TGKTRTAIA++ L+++ +++LFL DR SL QA AF+ + N + Sbjct: 404 TGKTRTAIALVDVLMKANVVQKVLFLADRTSLVVQATNAFKANLPDSAPVNLVES----- 458 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSD----EPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 + +++++T Q+++ + + +D I+VDEAHR Sbjct: 459 ---KTQNGRVYLSTYQTMMGLIDEMNADGTRKYGTGMFDLIIVDEAHRSVY--------- 506 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGE----PVYRYTYRTAV 642 + I +FD++ + LTATP T +FG P Y A+ Sbjct: 507 ----------QKFGEIFKYFDSLLVGLTATPRDEVDRDTYALFGLESGVPTDYYDLNQAI 556 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 DG+L+ + + +EGV + + E++ E+ D + + + N+ L Sbjct: 557 ADGYLVPPKA-YSVPLKFMREGVKYDELSEEEKLHWD-ELDWDGGDAPDEVTASKINKEL 614 Query: 703 VIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 + L KT++F V HA+ + E YP + Sbjct: 615 FNTGTVDKMLQHLMENGIKVEGGDMLGKTIIFAVNQNHANFIAERFDK----NYPHYDGK 670 Query: 759 AIIKITGDADKDARKVQTMITRFNKER--LPNIVVTVDLLTTGVDIPSICNIVFLRKVRS 816 IT + Q++I F+K+ P I ++VD+L TG+D+P + N+VF + VRS Sbjct: 671 FARVITHST----KYAQSLIDSFSKKDLADPQIAISVDMLDTGIDVPEVVNLVFFKAVRS 726 Query: 817 RILYEQMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTL 871 ++ + QM GR TRLC PE++K F IFD + P+ + L Sbjct: 727 KVKFTQMIGRGTRLCKDLFAPEMDKKEFYIFDYCSNFEYFNENPDGAPIST-----TEPL 781 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETI-DKQVRRLDEL 930 + + ++ + ++ + + ++++ + + ++ I ++ ++ Sbjct: 782 GQRLFKARLNVLSLLNSPNYQTEEMKAVQQEMRQSLQTEVKSMNKDNFIVKSEIEHVEYF 841 Query: 931 CQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDE 990 DAA N + A + P + L +I Sbjct: 842 KTDAAWDNLDDLAIGTLREHISKLPNELETEPLEAKLFDMLCYNIELAVLEKNIKASQLY 901 Query: 991 VVSVKSLYGDYDTPQDF--LEAFDSLVQRSPNA-------QPALQAVINRPR---DLTRK 1038 V + +T ++ + A +L+Q P L+++ R R L K Sbjct: 902 ANKVIEIASKLETKENIPVVAAQINLIQEIQTEAYWEGITVPILESMRKRIRGLVKLIEK 961 Query: 1039 GLVELQEWFDRQHFEESS----------LRKAWKETRNEDIAA----------------- 1071 + E++ + A R E Sbjct: 962 STSTIVYSMLDDEIGEATEVDIPVVSSGVNIAQYRKRVESFIKSNEDHITIAKLKRGLAL 1021 Query: 1072 ------RLIGHIRRAAVGDALKPFEE---------------------RVDHALTRIKGEN 1104 L + A ++ + FEE V A ++ + Sbjct: 1022 TPTDLNELERFVFDAQEVESKEKFEECFGTEKPLPLFIRSLVGLDRKSVQAAFSKYLQGS 1081 Query: 1105 DWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFD----DNLDTLLGK 1160 ++ +Q+ +++ + + L + L+ F + + F DN+ ++ Sbjct: 1082 TYNEKQIRFIEMVIEHLTIRGTLEASQLYEPPF-NQIHYEGIDGVFGDGDADNIFGVVEA 1140 Query: 1161 FSDY 1164 F++ Sbjct: 1141 FNES 1144 >UniRef50_A6DQ75 Type I restriction-modification system R subunit (Endonuclease) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQ75_9BACT Length = 1138 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 236/1272 (18%), Positives = 426/1272 (33%), Gaps = 247/1272 (19%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLG----LLLNIPPCE 60 SNF F+K + Y + AE + D R+ E K L L+ + Sbjct: 2 SNFTFIKDIFPEVYELGVKAEEHLKQDKRACAFYCRLTLEVAVKWLFINDPNLIQPYKPK 61 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLN-DAQMCLRLGFRLAVWYY 119 + + G V ++ H ++GN A H + L F W Sbjct: 62 GLGEFVYAPGFQQLVPRDVNDGVHFAIKVGNHAAHSKGALREYELVTALEAVFSFVKWLA 121 Query: 120 RLVT---KDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLV 176 T K+ F + P QE Q ++ + Sbjct: 122 HYYTDAEKNIAFDLKNIPDPTAEVKGLKQEEAK---------------QLALKFKDHFQK 166 Query: 177 ALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR 236 L+ E ++ +++ + L+A+LA ++T + Sbjct: 167 ELDQARERDEENLKQASLRSEQEIKNLKAELAALKTINEQETFE---------------S 211 Query: 237 TLNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG 295 + +EEE+R L ID L++ GW + + K + P G Sbjct: 212 DFDPNEEETRTLYIDLLLKEVGWNLEGANDKEYK-----------VTGMPKAGKNKSGIG 260 Query: 296 FADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 + DYVL+ KP+AVVEAKR D ++ Y+ C + + Sbjct: 261 YVDYVLWGDNGKPLAVVEAKRTMRDAKEGKQQAKLYADCLEKMHGQR------------- 307 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 P + TNG E DT+ +++ ++ Sbjct: 308 --------------------PILFYTNGFETFI------------WDDTQYPDRSVYGFY 335 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 +EL ++ Q + R YQE A++ V + + ++ LL MATG Sbjct: 336 TKKELETLIERR--YQRASIYSLSVDKNIAGRPYQERAIKKVLETFEEKRRRALLVMATG 393 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQAL-GAFEDTRINGDTFNSIFDIKGL 533 +GKTRTA+A++ L + KRILFL DR++L QA+ +F N N L Sbjct: 394 SGKTRTAVALVKCLTEGNWCKRILFLADRKTLVGQAMRKSFRPYLPNLSMVN-------L 446 Query: 534 TDKFPEDSTKIHVATVQSLVKRTL----QSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 + + +++ +T Q+++ + V +D I++DE+HR Sbjct: 447 LKEEENNKSRMVFSTYQTMINKIDVLNEDGTRQYGVGHFDLIIIDESHRSIY-------- 498 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTA 641 S Y I D+FDA + LTATP +T + F G+P Y+ + A Sbjct: 499 -----------SKYGAIFDYFDANLVGLTATPLDQRDRNTFETFDLPDGQPTDVYSLKDA 547 Query: 642 VIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLE-DDQDFEVADFNR 700 V D FL+ + + G+ S+ E+ + ++ + ++ + N+ Sbjct: 548 VDDKFLVMYKLK-KPDLKFPSRGIKYSELPPEEQAHYEETFTDELTDVIPEEVKGEAVNK 606 Query: 701 GLVIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLE 756 L R V ++L KT+VFC + HA+ VVE F + YP Sbjct: 607 WLFNEDTVRKVLDKLMTEGIKVEGGDKLGKTIVFCRSRQHAEYVVE----VFDRMYPAYS 662 Query: 757 HDAIIKITGDADKDARKVQTMITRFNKERL-PNIVVTVDLLTTGVDIPSICNIVFLRKVR 815 + Q I F K +L P I V+VD++ TG+D+P + N+VF + V+ Sbjct: 663 GHFCQVVH----NKCYDPQQTILDFEKPQLMPQIAVSVDMMDTGIDVPEVVNLVFFKSVK 718 Query: 816 SRILYEQMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLE------------------ 852 S+ + QM GR TR C P +K F+IFD + + Sbjct: 719 SKSKFWQMIGRGTRTCENLFGPGKDKKDFRIFDYCGNFDFFKVNAEGFETGAPESLMQKM 778 Query: 853 ------SVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRI 906 ++ + E Q L E +++ D H + + L Sbjct: 779 FRCRSRLAYYLQTAEFQSVPETQALWEESISWIHEQLSGIDCTGALVRKHRRSIELLSTK 838 Query: 907 IGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREK----------------- 949 L N + T+ K + L Q + L Sbjct: 839 EELRCLNESKLSTLIKDLSSLPMPGQREEEMKKRFDVRMLNLMIAIVEASKQKQPLIKGV 898 Query: 950 ----------------------------GPHWSAEVFNKLPGFIARLEKLKTDINNLNDA 981 W + + L +L ++ +++ Sbjct: 899 MKTAEDLRQKAGIPSVKAKLELLNRVVQKEFWKDVSLDTVDYVRKELRELIKLLDKDDES 958 Query: 982 PIFL--DIDDEVVSVKSLYGDYDT----PQDFLEAFDSLVQRSPNAQPALQAVINRPRDL 1035 D+ D + + + + + +++ E P+ + N+P L Sbjct: 959 QKIYHTDLKDTITNPDETWEEGENYGDEYENYKENLRRYFLAHPDLAAVWKLQNNKP--L 1016 Query: 1036 TRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDH 1095 + L EL+ + + E + L +R D E+ V Sbjct: 1017 GNEDLKELEGVVYSSVVSDRERFEENCEGK------SLQAFVRSLIGMD-----EKAVSE 1065 Query: 1096 ALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRR-GGKAMLQRTFDD-N 1153 A + + ++++Q+ + + + + + F GG L + Sbjct: 1066 AFSDFLDTHAFNAKQIDCIKIIMDHYIKNGFMSKAFLQEQPFKGFSGGFIGLYGQDNALK 1125 Query: 1154 LDTLLGKFSDYI 1165 L +++ + ++ + Sbjct: 1126 LVSVINELNEGV 1137 >UniRef50_C0E6A8 Putative uncharacterized protein n=1 Tax=Corynebacterium matruchotii ATCC 33806 RepID=C0E6A8_9CORY Length = 1158 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 256/1266 (20%), Positives = 430/1266 (33%), Gaps = 230/1266 (18%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE- 60 SNF F+ V AE + +P I+ R E H+ + Sbjct: 4 PQPSNFAFIGRVWPELLIHCRNAEQSAVSNPRVAGIEARFTLERLVDHIVEAYGLRSVSD 63 Query: 61 -NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEY-HNDLNDAQMCLRLGFRLAVWY 118 N +D L V+ I + LRR GN A H H D A + F + VW Sbjct: 64 WNLNDKLNHRSFKDRVNQRIHDKMNVLRRFGNDAAHNPDHIDPERAVRAIGQLFDILVWA 123 Query: 119 YRLVTKDY-------DFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQ 171 V + F + + QE+ L QQL++ V E T+ + + Sbjct: 124 AVNVARPPLERTKLPTFDRSIVYNAPKQRQRSQQEIAKLNQQLQKAVDEIETTKLLLTER 183 Query: 172 QQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITD 231 ++ + + LEA+LA+ A++A T Sbjct: 184 EETWRQERKAHLDQIAAFKGQTEELARARDQLEAELAQLRADIAANTR-----------S 232 Query: 232 QAIKRTLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDE 290 +SE E+R LID L +AG+ L+ T Sbjct: 233 IDTSNNFAISEAETRRDLIDPALAEAGFNVARGNLK-------------------TEFCL 273 Query: 291 TGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSP 349 +G DYVLF +P A+VEAKR + A ++ Y+ + F Sbjct: 274 ADGKGVVDYVLFGDDGRPYAIVEAKRAGKAIDAGRQQAEYYADELEKQFGLR-------- 325 Query: 350 DEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKA 409 P Y TNG E R + S+A Sbjct: 326 -------------------------PIIYYTNGHEIRLLDDAANLPGI--GAGAGYPSRA 358 Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILL 469 + + +EL M+ Q+ Q +++ R YQ ++AV + G + LL Sbjct: 359 VEGYATKDELYAMIRRRTQR--QDLNTVSVDTQIAGRPYQITMLQAVAERFGAGHRRALL 416 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 MATGTGKTRTAIA++ +L Q+ K +LFL DR+SL +QA AF + + + + + Sbjct: 417 VMATGTGKTRTAIALVKQLAQAGWVKNVLFLADRKSLVKQAAEAFSEHLRDMPVVDLLRN 476 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 + +++ +T Q+++K ++D I+VDEAHR Sbjct: 477 QH--------GTGQVYCSTYQTMMKLL---GSRFGTYQFDLIIVDEAHRSIY-------- 517 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTA 641 Y RI D+FD++ + LTATP +T +F G+P Y+ A Sbjct: 518 -----------RRYSRIFDYFDSLLLGLTATPRCDVDHNTYALFQLNDGQPTANYSLDEA 566 Query: 642 VIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG-----EVINDTLEDDQDFEVA 696 V +G+L+ Q + ++GV E+ + + L+ + E Sbjct: 567 VDEGYLVPFKA-FQCSSVILRDGVAYKDLSPEEQQQWENQDWGIDDDGLPLDIPLEVESE 625 Query: 697 DFNRGLVIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKY 752 + N L R V ++ + KT+ F + HA +V + + Sbjct: 626 EINLKLYNKDTIRKVVGQVLCHGIKVAGADRIGKTIFFTRSKKHAQLVCDIIHET----N 681 Query: 753 PQLEHDAIIKITGDADKDARKVQTMITRFNKERL--PNIVVTVDLLTTGVDIPSICNIVF 810 PQ+ I D+ +I RF ++ ++VD+L TGVD+P++ N+VF Sbjct: 682 PQVRAAVITHEVYDS-------LDLIDRFKASGKGSLDVAISVDMLDTGVDVPAVVNLVF 734 Query: 811 LRKVRSRILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLESVDTMRPVVVR-- 863 + V S + QM GR TRL P ++K F +FD D E + + Sbjct: 735 FKPVYSNTKFWQMIGRGTRLAPNLFGKGLDKREFYVFDYCDNLRRFEDAEHIVSTTGSQQ 794 Query: 864 ---------PKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLV-------------- 900 ++EL +L+ + ++ + LV Sbjct: 795 RPLSERTFLKRIELASLLPADDPTRADLVSGLRNQLQTVPISSVLVRPEDRAELEHYLCA 854 Query: 901 ------AKLQRIIGLATFNRDRSETIDKQVRRLD------ELCQDAAGVNFNGFASRLRE 948 ++ LA ++Q +R D +L R+ Sbjct: 855 DAWGSGTDIESAGKLAYLPFADDPEDEEQAKRFDYLMLTLQLALARGEALPTRHRDRVTN 914 Query: 949 KGPH-------------------------WSAEVFNKLPGFIARLEKLKTDINNLNDAPI 983 H W L L L I+ + + Sbjct: 915 IARHLLSKTNVPRVADAASTLEHYSEDLWWEGITIADLELARRTLRTLVQFIDPGYRSEV 974 Query: 984 FLDIDDEVVSVKSLYGDYDTP----QDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKG 1039 LDI+DE+ +T + ++++ + P + +P LT Sbjct: 975 VLDIEDELAEPAEFNLPTETANLSYSSVEDQLREVLEKHLDDLPIQRLRKMKP--LTAMD 1032 Query: 1040 LVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTR 1099 L L+E + E R ++G +R D +E V Sbjct: 1033 LAALEEIIAG--------VEGVDEFRARIGDQSIVGFVRSLIGLD-----QEAVQEQFAD 1079 Query: 1100 IKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLG 1159 ++ +++Q +L R+ + L + L F G + F + DT++ Sbjct: 1080 FLSRSNLNAKQQEFLRRIIRVLAKTGSLTIGQLFEEPFKDLG---NVFDVFPGD-DTIVY 1135 Query: 1160 KFSDYI 1165 D + Sbjct: 1136 DLKDRL 1141 >UniRef50_Q0AZK4 Type I restriction-modification system R subunit (Endonuclease) n=4 Tax=Firmicutes RepID=Q0AZK4_SYNWW Length = 1115 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 243/1263 (19%), Positives = 433/1263 (34%), Gaps = 262/1263 (20%) Query: 4 KSNFEFLKG--VNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLN---IPP 58 +NF+FLKG AE P + R E K + N +P Sbjct: 2 SANFDFLKGQAEYTLFATACIEAERVLATSPAMAAMGSRKACELAVKWVYSADNTITMPY 61 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVW 117 +N L+ E +D+ S + ++GN AVH +DA + L F W Sbjct: 62 RDNLQSLIHEPSFRFVLDNQTWSKLLYIIKLGNLAVHTEKAISRSDAVLSLSFLFEFIQW 121 Query: 118 YYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 +Y E++ +A++ A+Q L Sbjct: 122 IDYCYGFNY--------------------------------VERSFDEAKIPAEQVILDV 149 Query: 178 LNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRT 237 Q++TE + AL A++ + +L E ++ H Sbjct: 150 TKLKEIDSLIDQKDTE------IEALRAKIEAMSPQLTADKEHHKEERHFT--------P 195 Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 L++SE +R ID L+ GW + G +G+ Sbjct: 196 LDISELLTRKKYIDVDLKLLGWVFGDDVQEEVELY---------------GMPNPEGKGY 240 Query: 297 ADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADYVL+ P+AV+EAKR + D ++ Y+ C + R Sbjct: 241 ADYVLYGKDGLPLAVIEAKRTSKDPKIGTQQAKLYADCLEKMTGRR-------------- 286 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 P ++TNG E D + + + Sbjct: 287 -------------------PMMFTTNGFETYL------------WDDLTSPQRKVSGVFS 315 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 +L +++ +++ + P ++ RYYQ++A+RAV + I G ++ LL MATGT Sbjct: 316 KADLEKLMNRRNERK--PLDEIPIDDKITDRYYQKEAIRAVCENIETGHRKSLLVMATGT 373 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKTRTA ++ L + LFL DR +L QA F+ + N + + + Sbjct: 374 GKTRTASSLTDVLSRGGYITNTLFLADRTALVRQAKNDFKTNLPDMSLCNLLINKE---- 429 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEP-----MPVARYDCIVVDEAHRGYILDKEQTEGE 590 + + +I +T +++ + A +D I+VDEAHR Sbjct: 430 ---DKTARIVFSTYPTMLNAIDSAKNENGQRLFTPAHFDLIIVDEAHRSIF--------- 477 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAV 642 YR I ++FD++ I LTATP +T F G P Y Y Y TAV Sbjct: 478 ----------KKYRAIFEYFDSMLIGLTATPKQEVDRNTYDFFEMESGVPTYAYAYETAV 527 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 ++ I++ TR +EG+ + + ++ + + ++ E N + Sbjct: 528 DKDHVLVPYHNIEVRTRFLEEGITYDELSEEDKARYEEDFTDEDGEMPDFIPSPAVNEFI 587 Query: 703 VIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 V +L KT++F HA+ +VE YPQ Sbjct: 588 FNQCTVDMVLEDLMTKGIKVAGGDRLGKTIIFAQNKKHAEYIVERFNKL----YPQYHGS 643 Query: 759 AIIKITGDADKDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 ++ D + VQT+I F E+ P+I V+VD+L TG+D+P + N+VF +++RS+ Sbjct: 644 FAKRVVCDDN----YVQTIIDDFKIAEKEPHIAVSVDMLDTGIDVPELVNLVFFKRIRSK 699 Query: 818 ILYEQMKGRATRLC-----PEVNKTSFKIFDCVDIYSTL--------------------- 851 I + QM GR TRLC +KT F IFD + + Sbjct: 700 IKFWQMIGRGTRLCKNLFGDGQDKTHFLIFDYLGNFEFFRTNKDGVKGNETQSISEAIFA 759 Query: 852 ----------ESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQ--- 898 +S P + T+V +I T I+ + E + Sbjct: 760 KRVRLIHHLQQSAFMEEPYQAIRTNLIDTVVQQINTLNTELISVKLQLQYIEKYKNKDAF 819 Query: 899 -LVAKLQRIIGLATFNRD-RSETIDKQVRRLDELCQDAAGVNFNG--------------- 941 ++ L + + + +D+ +R D G Sbjct: 820 VFLSDLDKHDLIVHLAPLVYMDDMDEFAKRFDNFMYGLMIAQIEGAPHFNKGKKQLINVC 879 Query: 942 --FASRLREKGPHWSAEVFNK---------------LPGFIARLEKLKTDINNLNDAPIF 984 + R+ E+ N I +K ++ +PI+ Sbjct: 880 SSLSQRITIPQIKEKIELINNVGTDDFWQNSDILDFEKARIELRSLIKFIVDEGGVSPIY 939 Query: 985 LDIDDEVVSVKSLYG--DYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVE 1042 +++D V+ VK G T +D+ + ++ + + + N P LT Sbjct: 940 TNLNDIVLEVKEGEGLDPAYTFEDYKLKVNRYIEENRDHIAIYKLRNNIP--LTAFDYNS 997 Query: 1043 LQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKG 1102 L+ F + + +++T + ++ AA A + Sbjct: 998 LEHIFTGELGTPEDYEREYQDTPFGLLVRKIAKMEYEAAC------------AAFSEFIN 1045 Query: 1103 ENDWSSEQLSWLDRLAQALKEKVVLD-DDVFKTGNFHRRGGKAMLQRTFDD-NLDTLLGK 1160 + S Q+ ++ ++ + + ++ F + + FD ++ Sbjct: 1046 DQSLSQGQIVFVKKVIDYIMQNGYIENVSTLMKPPFDK---PKSFIKLFDGSKQKQIVEA 1102 Query: 1161 FSD 1163 + Sbjct: 1103 VNQ 1105 >UniRef50_UPI000050FFCE type III restriction enzyme, res subunit n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FFCE Length = 1135 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 255/1256 (20%), Positives = 440/1256 (35%), Gaps = 228/1256 (18%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP--PCENQ 62 +NFEF++ + + AE+ DP + I R E HL +LN+P ++ Sbjct: 2 TNFEFIRAEWPTIFTDSARAESYVFSDPRSACIYSRRSIERLVIHLYTILNLPTPYKDDL 61 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDA-QMCLRLGFRLAVWYYRL 121 + + A I LR++GN AVH DA L + + +W Sbjct: 62 SARINDPKFKAATGIGIHQKLTFLRKLGNNAVHNDTPVPVDAAIRALSELYLVIIWAAFH 121 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGY 181 ++ D + + + +L + V + Q E+ A Q++L Sbjct: 122 HSRIPDSVPAG---TQFDPKIAKRAAPLSPAELAKLVDKFKQQDEELAAAQKQLA----- 173 Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 E A A++AA A + EL +Q + + + Q K Sbjct: 174 ---------EISADVDAQIAAATADKDSQIEELQRQVAAAQSSKVTTLDSQEWK------ 218 Query: 242 EEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E+ +R LID L AGW D +R + + G G+ADYV Sbjct: 219 EDRTRTDLIDVDLELAGWNLDEPNVREFRIS---------------GLPTPSGVGYADYV 263 Query: 301 LF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 L+ KP+AVVEAKR + V A ++ Y+ + F R Sbjct: 264 LWGTDGKPLAVVEAKRTSASVEAGRRQAEMYADGIEKAFGRR------------------ 305 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 P + +NG ++ + + ++ +EL Sbjct: 306 ---------------PVIFFSNGDRHQL-----------WDDTGGYPPREIHGFYTRDEL 339 Query: 420 LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTR 479 ++ + P S++ R YQ + V + Q+E LL MATG+GKTR Sbjct: 340 ELLIQRRTTRVR--LEGRPVNSDIVNRGYQRQIIAQVGRDFDDRQREALLVMATGSGKTR 397 Query: 480 TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE 539 TAIA++ +L+++ KR+LFL DRR+L +QA G F N T N + Sbjct: 398 TAIALVDQLMKANWVKRVLFLADRRALVKQAAGEFTAHLPNVTTVNLLDTTDK-----DN 452 Query: 540 DSTKIHVATVQSLVKRTLQSDEP-MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLD 598 S ++ V+T +++ + D+ +D +++DEAHR Sbjct: 453 ASGRVFVSTYPTMMGLIDKGDDTVFGPGYFDLVIIDEAHRSVY----------------- 495 Query: 599 YVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFLIDQ 650 Y+ I D FD++ + LTATP +T +F G P YT A+ D +L + Sbjct: 496 --RKYKAIFDWFDSLLLGLTATPKDEIDRNTFNLFHIENGVPTGAYTLEQAIRDKYLTEP 553 Query: 651 DPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRA 710 I + T+ +EG++ + ++ R E+ + D N L Sbjct: 554 R-EINLGTKFLEEGIHYADLDEEARTDWD-ELEWEDGTIPDDVHATALNNYLFNADTVDI 611 Query: 711 VCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD 766 V ++L + S K+++F HAD + + YP IT Sbjct: 612 VIDKLMSDGLKIESGDKLGKSIIFAQNQRHADFIQQRF----DIHYPAHAGKFARVITHQ 667 Query: 767 ADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 D Q +I +F + P I ++VD+L TG+DIP I N+V +KVRS+ + QM G Sbjct: 668 TDS----AQDLIEKFKDPNQHPQIAISVDMLDTGIDIPEILNLVLFKKVRSKSKFWQMIG 723 Query: 826 RATRLCPEV-----NKTSFKIFDCVDIYSTL-ESVDTMRPVVVRP--------------- 864 R TRL P++ +KT F +FD + E D P V P Sbjct: 724 RGTRLSPDIFGPGHDKTEFYVFDFCANFEYFNEQFDKAEPRQVLPLNHRILRTRAELLAA 783 Query: 865 ---KVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSET-- 919 + +L L + ++ + + + +H + V+ + D + Sbjct: 784 ISSQSDLSGLRSGLSGELARFVRGIPAENRSVRAHRRWVSDFATDSSWTQADPDTTAEAV 843 Query: 920 ------------IDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFN-------- 959 ++ +R D + A +G + AEV Sbjct: 844 DHLGGLPSSAIDASEEAKRFDLIVLTAQLSALDGVFVTPASRTVQDIAEVLLTKQSIPMV 903 Query: 960 ----------------------KLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSL 997 +L R+ +L PI+ D DE+ +S Sbjct: 904 ASQVELLEEIVRPEWWQDVTLPELEDVRIRVRELVRFAKGKRQNPIYTDFVDELRENESS 963 Query: 998 YGDYDTP----QDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFE 1053 P + + + N + + N+ LT L L+ Sbjct: 964 SLPAHEPGLNIDRLRDRARAYLNEHKNHLAVQKLMRNQ--QLTEADLEALKSILVDGGVG 1021 Query: 1054 ESSLRKAWKETRN--EDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQL 1111 + A ET + L+G R+A V ++ +S+ Q+ Sbjct: 1022 DELSIHAAAETADGLGLFVRSLVGLERQA------------VMELFGEYLDDSRFSAIQI 1069 Query: 1112 SWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTL---LGKFSDY 1164 ++ ++ L +++ + + + L T+ L + Sbjct: 1070 EFVRQIIDELSTNGIVERGRLFEEPYTDIYSGDVFELFPGGALATIGARLDEVKHR 1125 >UniRef50_Q04L29 Type I restriction-modification system, R subunit, putative n=31 Tax=Streptococcus RepID=Q04L29_STRP2 Length = 1116 Score = 578 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 231/1265 (18%), Positives = 436/1265 (34%), Gaps = 262/1265 (20%) Query: 6 NFEFL--KGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGL---LLNIPPCE 60 NF FL + AEN T R E + L P Sbjct: 3 NFSFLLKNDEYESFSKPCIEAENMIATSTVATAFMARRALEQAVHWIYSHDSYLEAPYRA 62 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 L+ + VD + L R GN A H +A + L ++ + Sbjct: 63 TLSSLVWDDDFRDIVDSELHKQIVLLIRWGNHAAHGGEIKEREAILALHHLYQFVNFIDY 122 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 + FV E ++ Q + + + E+ +++ A + Sbjct: 123 CYSN-------EFVERYFDEKCLPLSANIKYRETPQSMIKLQDSLPELPDFHEQMAAQSV 175 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 + +++ET AQ Q ++ L Sbjct: 176 EVQETYTEKRETAAQRQDVPFHIDQ----------------------------------L 201 Query: 241 SEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 SE E+R L ID LR AGW + G G+ DY Sbjct: 202 SEAETRKLFIDIDLRLAGWIFEENCRVEIAVD---------------GLKHGSGIGYCDY 246 Query: 300 VLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ K +A+VEAK+ +++ + Y++ + + Sbjct: 247 VLYGKNGKILAIVEAKKASVNPEVGEVQVKEYAEALEKHIGYQ----------------- 289 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P C+ TNG ++ + + ++ EE Sbjct: 290 ----------------PICFITNGLKHYILDGPN--------------RRQIAGFYSQEE 319 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 L ++ ++ + ++ R+YQ+ A+ +V +A +++ LL MATG GKT Sbjct: 320 LQLVMDRRHLQKPLEDISSKIRDDISGRHYQKHAIASVCEAFSNHRRQALLVMATGAGKT 379 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP 538 RTA++++ L + K +LFL DR SL +QA +F + N L DK Sbjct: 380 RTAVSLVDILSRHNWVKNVLFLADRTSLVKQAYDSFRKLLPDLSVCN------FLEDKEG 433 Query: 539 EDSTKIHVATVQSLVKRTLQSDE----PMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 S+++ +T +++ +E P V +D I++DE+HR Sbjct: 434 AQSSRMVFSTYPTMIGAISGQEEVNQRPFTVGHFDLIIIDESHRSIY------------- 480 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDGF 646 Y+ I D+FDA + LTATP +T F G P Y Y AV DG+ Sbjct: 481 ------QKYKSIFDYFDARIVGLTATPRQDLDKNTYGFFNLENGVPTYAYDLEEAVKDGY 534 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 L+ I+ + +G++ + E+ + +D+ E D D V FN + + Sbjct: 535 LVAYHS-IETKLKLPTDGLHYDDLSEEEKEHFDSKFEDDSCEKDIDGSV--FNSFVFNKS 591 Query: 707 FNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 V NEL T S KT++F + HA+ + + +K Sbjct: 592 TVEIVLNELMTRGIQTASGDEIGKTIIFAKNHDHAEYIRGIFNNRYPEKGSDYAQV---- 647 Query: 763 ITGDADKDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 D + QT+I F +E+ P I ++VD+L TG+D+P + N+VF +KVRS+ + Sbjct: 648 ----IDYSIKHYQTLIDDFKIEEKYPQIAISVDMLDTGIDVPEVVNLVFFKKVRSKTKFW 703 Query: 822 QMKGRATRLC-----PEVNKTSFKIFDCVDIYSTL------------------------E 852 QM GR TRLC PE +K +F +FD D + + Sbjct: 704 QMIGRGTRLCKDLFGPEQDKENFLVFDYGDNFDYFRADPRDGEGRHIVSLTQRLFNIKVD 763 Query: 853 SVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATF 912 + ++ + + + ++ +I + F V +++ Sbjct: 764 LIRELQGLQYQEDQFARAYRQQLVSELQGRIESLNELDFRVRMVLDTVYSYRKLESWQNL 823 Query: 913 NRDRSETIDKQVR--RLDELCQDAAGVNFNGFASRLR----------------------- 947 SETI K + DE +D F+ + ++ Sbjct: 824 TAVTSETIQKNLSPLLFDEDKEDEMARRFDLWLLHIQLGQLTAKSSTVHISQVMKTARAL 883 Query: 948 -------------------EKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDID 988 ++ W + L + L ++ + P +++++ Sbjct: 884 SAIGNIPQVFEQAEIIRKVQEPEFWKEVNLSDLEKIRLAIRDLLQFLDKTDRKPYYVNLE 943 Query: 989 DEVVSV---KSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQE 1045 D ++S + + + + + E + ++ + + + N + LT ++ L++ Sbjct: 944 DRILSTVHETTAFLQVNDLRSYNEKVEHYLKTHLDEESISKLYHN--KKLTSDDMLALEK 1001 Query: 1046 WFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGEND 1105 + ++ + ++ + +IG R +A + ++ + + Sbjct: 1002 LLWEKLGSKADYQSHYENKAIPRLVREIIGLDRESA------------NRIFSKFLSDEN 1049 Query: 1106 WSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLD------TLLG 1159 ++ Q+S++ + + E L+ V F G +Q F L ++ Sbjct: 1050 LNARQISFVKLIVDYIVENGFLETKVLTQEPFKSYG---SVQLLFQHQLPVLRNIVQIIE 1106 Query: 1160 KFSDY 1164 ++ Sbjct: 1107 LINNR 1111 >UniRef50_C6LMG2 Type I restriction-modification system, R subunit n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LMG2_9FIRM Length = 1132 Score = 577 bits (1488), Expect = e-163, Method: Composition-based stats. Identities = 235/1260 (18%), Positives = 439/1260 (34%), Gaps = 249/1260 (19%) Query: 4 KSNFEFLKGV--NDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIPP 58 K+NF++LK +A +AE DP +++ R E K + + L +P Sbjct: 20 KTNFDYLKKDSKFSGFADVAISAEKIILMDPEASILNSRRAMEFAIKWMYSVDSDLEMPY 79 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVW 117 +N L+ V ++ +RR GN A H ++A +CL F + Sbjct: 80 QDNLQSLMNAEEYRHIVGPDLWKRMDYIRRCGNNAAHSNKKLGKDEAMLCLENLFIYLDF 139 Query: 118 YYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 + Q E+ +K + +E ++ A Sbjct: 140 IAYCYS----------------------------DQYEEHSFDKTLITSRIEKARESKDA 171 Query: 178 LNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRT 237 + K+QE A+ + L L A+ A EL+ + +++++ Y + + Sbjct: 172 AIA-VKTELAKEQEKSARQELDLQKLIAENASLKEELSSRRQEQQQTY--------VPKP 222 Query: 238 LNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 L+LSE ++R L ID+ L AGW + + G GF Sbjct: 223 LDLSEYKTRKLYIDSMLTDAGWVEGRDWRNEVELS---------------GMPNQSEVGF 267 Query: 297 ADYVLFVGL-KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADYVL+ + +P+A+VEAKR +DV ++ Y+ + + R Sbjct: 268 ADYVLYDDMHRPLAIVEAKRTCVDVSKGRQQAKLYADLLEQKYKRR-------------- 313 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 P + TNG E D + + + Sbjct: 314 -------------------PVVFLTNGFETHII-------------DGQYPERKCSAIYS 341 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI-VKGQQEILLAMATG 474 +L + + RYYQE A++AV + K +++ LL MATG Sbjct: 342 KRDLEKWFN--LMMTRTSLKHVVVNKNIAGRYYQESAIKAVCSSFGEKNRRKALLVMATG 399 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLT 534 +GKTRT IA+ L+++ + ILFL DR SL QA +F + N N L Sbjct: 400 SGKTRTVIALCDCLLKAGWIRNILFLADRNSLVTQAKRSFVNMLPNLSCTN-------LV 452 Query: 535 DKFPEDSTKIHVATVQSLVKRTL----QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 ++ + +T Q+++ + +D ++ DEAHR Sbjct: 453 EEKDNYNAHCVFSTYQTMMNCIDTTCDDKGKLFTCGHFDLVICDEAHRSIY--------- 503 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAV 642 + YR I +FDA I LTATP +T ++F G P Y Y AV Sbjct: 504 ----------NKYRDIFAYFDAPLIGLTATPKDEIDKNTYEVFELENGVPTYGYDLAQAV 553 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 DG+L+D ++ + ++G+ + + ++ + + ++ + + N + Sbjct: 554 KDGYLVDY-VSVESELKFIEQGIVYDELSEEDKQTYEETFTDEHGNLPESISSSALNTWI 612 Query: 703 VIPAFNRAVCNELTNYLDPTGSQ----KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 + V + L KT++F + HA+ ++E + D Sbjct: 613 FNEDTIKKVLHILMTEGIKIDYGQKLGKTIIFAKNHDHAEKILEVFHKEYPHL-----TD 667 Query: 759 AIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 I D Q+ I F+ +++P I ++VD+L TG+D+P + N+VF +KV S+ Sbjct: 668 YAKVI----DNYMTYAQSAIDEFSDPKKMPQIAISVDMLDTGIDVPEVLNLVFFKKVMSK 723 Query: 818 ILYEQMKGRATRLCP----EVNKTSFKIFDCVDIYSTLE--------------------- 852 + QM GR TRLCP +K F IFD + Sbjct: 724 AKFWQMIGRGTRLCPGLIDGEDKQKFYIFDFCKNFEFFRMNKGKATANMIALQGAIFNLK 783 Query: 853 -SVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLAT 911 + + L + + + K+ E +FA H + V Sbjct: 784 FEISYKLQDIEYQTDRLIAYRDALVQQMSEKVQELPRDNFAVRQHLKYVDMYSSESNYNA 843 Query: 912 FNRDRS-------------ETIDKQVRRLDELC----------------QDAAGVNFNGF 942 + + + + R D L + G Sbjct: 844 LTYEDTLIVREEVAPLMLPDEDEASAVRFDALMYGIELAYLVGKRYSKARSDLHKKVAGI 903 Query: 943 ASRLREKGPHWSAEVFNKLPGF-------IARLEKLKTDINNLND------APIFLDIDD 989 AS +++ NK+ I E+++ + NL + + D Sbjct: 904 ASVANIPEIQAQSDLINKILNTDYVDNAGINEFEEIREKLRNLMKYIPSGTSKYVTNFTD 963 Query: 990 EVVSVKSLYGDYDTPQ--DFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWF 1047 E++S + + + + ++ + +++ + + N+P LT + L+E Sbjct: 964 ELLSTEWKESELENDELNNYKAKAEYYIRQHQDNIAIAKLKTNQP--LTSTDVETLEEVL 1021 Query: 1048 DRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWS 1107 + + + + ++G AA A + Sbjct: 1022 WHEVGTKQDYENEFGTKPLGEFVREIVGLDMNAA------------KEAFSEYLTNTSLD 1069 Query: 1108 SEQLSWLDRLAQALKEKVVL-DDDVFKTGNFHRRGGKAMLQRTFD--DNLDTLLGKFSDY 1164 S Q+ +++++ + + ++ D V + F RG + + + ++ + Sbjct: 1070 SRQIYFVNQIVEYIVHNGMMKDLSVLQESPFTDRGSVVEIFTDLNVWMGIKKVIDTINAN 1129 >UniRef50_Q043T1 Type I site-specific restriction-modification system, R (Restriction) subunit related helicase n=14 Tax=Firmicutes RepID=Q043T1_LACGA Length = 1113 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 235/1268 (18%), Positives = 437/1268 (34%), Gaps = 265/1268 (20%) Query: 1 MMNKSNFEFL--KGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LN 55 M++ +NF++L + IA AAE DP T++I R E K + + L Sbjct: 1 MLSVTNFDYLLEEPQFKDFVEIAIAAEKVAVIDPATSVIDCRRAMELAVKWMYSVDKDLR 60 Query: 56 IPPCENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEY-HNDLNDAQMCLRLGFRL 114 P + L+ L VD N +RR+GN AVH L++A +CL+ F Sbjct: 61 TPYQDKLVTLINTLDFKDIVDPNTWQGLDLIRRLGNVAVHTNRKVSLDEAVLCLKALFSF 120 Query: 115 AVWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQK 174 +Y ++ + + +E + Sbjct: 121 FDMLDYCYGSNYQ---------------------------KKDFDKSLVGKYRLEFIPKV 153 Query: 175 LVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAI 234 + A + L L + + Q + + +Y Sbjct: 154 VSAEKATFS----------------LDKLTKKNKSLQESMTAQRKAQEDSY--------N 189 Query: 235 KRTLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGN 293 + +SE ++R IDA L +AGW L + G Sbjct: 190 PKPFGISEFKTRKIYIDAMLAEAGWVEGQNWLNEVELK---------------GMPNKAG 234 Query: 294 QGFADYVLFVGLK-PIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEV 352 G+ADYVL+ P+A++EAK+ DV ++ Y+ + + R Sbjct: 235 IGYADYVLYDDAHQPLALIEAKKTCKDVAVGRQQAKLYADLLEKKYGRR----------- 283 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 P + +NG E R D + + + Sbjct: 284 ----------------------PVVFLSNGFETRII-------------DNQYPERQVSS 308 Query: 413 WHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI-VKGQQEILLAM 471 + +L ++ + + Q + + RYYQ+ A++AV ++ + +++ LL M Sbjct: 309 IYSKRDLEKLFNLQKVR--QPLTNIIVDDNIAGRYYQKAAIQAVCESFSKENRRKALLVM 366 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIK 531 ATG+GKTRTA+ ++ L+ + K +LFL DR +L QA +F + + + N + D Sbjct: 367 ATGSGKTRTAVGLVKVLLNAGWIKHVLFLADRDALVTQAKRSFVNLLPDLSSTNLVEDKS 426 Query: 532 GLTDKFPEDSTKIHVATVQSLVKRT-----LQSDEPMPVARYDCIVVDEAHRGYILDKEQ 586 + + +T +++ + +D I+VDEAHR Sbjct: 427 -------NYNARCVFSTYATMMNVIDTATDDDKKKLYTAGHFDLIIVDEAHRSIY----- 474 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTY 638 + YR I +FDA + LTATP +T IF G P Y Y Sbjct: 475 --------------NKYRNIFTYFDAPLVGLTATPKDDIDKNTYSIFNLEDGVPTYGYDL 520 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADF 698 AV DG+L+ I+ + + G+ E+ + ++ + + + Sbjct: 521 AQAVDDGYLVPYKS-IETHLKFMENGINYDDLSTQEKEEYEETFTDEDGDLPKKIDSGKL 579 Query: 699 NRGLVIPAFNRAVCNELTNYLDP----TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ 754 N+ L R V N L N KT++F + HA+ +++ + + Sbjct: 580 NKWLFNKDTIRKVLNILMNQGLKIDYGEKIGKTIIFAKNHRHAEEILKVFNEEYPQFSRN 639 Query: 755 LEHDAIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 + D Q+ I F+ ++LP I V+VD+L TG+D+P N+VF +K Sbjct: 640 THGQPYATV---IDNYTNYSQSAIDEFSDPDKLPQIAVSVDMLDTGIDVPECLNLVFFKK 696 Query: 814 VRSRILYEQMKGRATRLCP----EVNKTSFKIFDCVDIYSTLE----------------- 852 V S+ + QM GR TRLCP +K F IFD D + Sbjct: 697 VMSKAKFFQMIGRGTRLCPHLLDGKDKQEFYIFDFCDNFHFFRMGKGHEAGVQETLQSAL 756 Query: 853 ---SVDTMRPVVVRPKV--ELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII 907 ++ +R + P + + + K+ E + +FA H V K +I Sbjct: 757 FNLKMELVRKLQEEPYQTDDFNQYRKTLVEDLCKKVKELNRNNFAVKQHIAYVDKFSQIE 816 Query: 908 GLATFNRDRSETIDKQVRRL-------DELCQDAAGVNFNGFASRLREKGPHWSAEVFNK 960 + K++ L + A V A +E ++ NK Sbjct: 817 NYNNLTYEDIVNTKKELSPLILPDNDEPNALRFDALVYKMELAKMSQESYGRLKIDLCNK 876 Query: 961 LPGF-----IARLEKLKTDINNLNDAPIFLDIDDEVVSVKS------------------- 996 + I ++++ K I + D + + Sbjct: 877 VSKLSDLMTIPQVKEKKDLIKEILQPEYVESTDVKDLEYIRQSIRDLIQYLPKKGTVYYT 936 Query: 997 -------------LYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVEL 1043 + DT +++ + +++ + ++ N P L+ + L EL Sbjct: 937 NFADTVLDSTIHDAELETDTLKNYKAKAEFYIKQHQSENLMVKIRDNEP--LSSQDLKEL 994 Query: 1044 QEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGE 1103 + ++ + +K + ++G AA A + Sbjct: 995 ESILWQKLGSKEEYQKEIGNKAPGEFVRSIVGLDMHAA------------KKAFNKYLDT 1042 Query: 1104 NDWSSEQLSWLDRLAQALKEKVVL-DDDVFKTGNFHRRGGKAMLQRTFDDNL------DT 1156 + +Q+ +++ + + + + L D V + F +G + F+ ++ T Sbjct: 1043 VPLNKQQIYFINEIIEYIVKNGTLTDMHVLQESPFTNQG---SISELFESDITIWLKVKT 1099 Query: 1157 LLGKFSDY 1164 + + + Sbjct: 1100 AIDEINSN 1107 >UniRef50_C8W942 Type III restriction protein res subunit n=5 Tax=Bacteria RepID=C8W942_ATOPD Length = 1125 Score = 572 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 248/1274 (19%), Positives = 428/1274 (33%), Gaps = 269/1274 (21%) Query: 5 SNFEFLK--GVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIPPC 59 NF FLK + AE + P + R E K + +N P Sbjct: 1 MNFSFLKDIKEYEMFSGACEDAERTFASSPAMCALACRKAMELAVKWVYAADETMNEPWR 60 Query: 60 ENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYH-NDLNDAQMCLRLGFRLAVWY 118 N L+ E +D + ++GN A H D DA L F W Sbjct: 61 SNLASLIHEASFKNAMDTTTWGQLRYIWKLGNNAAHTQRQIDARDALAALAGLFNFVEWI 120 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 Y+ F LKQ L++Q Sbjct: 121 DYCYGPSYEERH--FDPKAIPV---------LKQALDEQK-------------------- 149 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL 238 K + A+ AR+A LE Q+ + A+ ++ EQ + H Sbjct: 150 -------LRKTLQENAEKDARIAQLEEQVRAQRAQFSETKEQRPEETHF--------NPD 194 Query: 239 NLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 + E E+R ID L AGW D ++ + G GF Sbjct: 195 EIPEYETRKRYIDVDLEYAGWNLDDSVKTEAEVS---------------GMPNPTGTGFI 239 Query: 298 DYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DYVL KP+A+VEAKR D ++ Y+ C + + Sbjct: 240 DYVLLGRNGKPLAIVEAKRTMYDPLKGEQQARLYANCLEKKYGYR--------------- 284 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 PF + +NG E R + D +A Sbjct: 285 ------------------PFVFLSNGFETRF------------MDDGTAAPRACSGVFGR 314 Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGL----RYYQEDAVRAVEKAIVKGQQEILLAMA 472 E+L ++ + +N + P ++ RYYQ +A+ AV + + +G + LL MA Sbjct: 315 EDLERLMNRRGKVKN--LSTVPVNRDIAGGGRNRYYQVEAIEAVCQNMEEGHRRSLLVMA 372 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKG 532 TGTGKTRTA ++ L ++ +LFL DR +L QA AF++ T ++ ++ Sbjct: 373 TGTGKTRTAAGLVDVLSRAGAVTNVLFLADRVALVRQAKNAFQNYL----TTMTVCNLCE 428 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTLQSDEP-----MPVARYDCIVVDEAHRGYILDKEQT 587 DK +I +T +++ A +D I+VDEAHR Sbjct: 429 TDDKAKNVDARIVFSTYPTILNAVDDVKRDGDARLFTPAHFDLIIVDEAHRSIF------ 482 Query: 588 EGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYR 639 YR I D+FD+ + LTATP +T F G P Y Y Y Sbjct: 483 -------------KKYRAIFDYFDSPVVGLTATPKDEVDRNTYDFFQVERGIPTYLYEYA 529 Query: 640 TAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDF-EVADF 698 TAV ++ I++ T +G+ + + +R + D+ E + Sbjct: 530 TAVEKDKVLVPYYNIEVQTNFLSKGITYDELSEEDRQRYDDDWEEAQGTSAPDYVEASAL 589 Query: 699 NRGLVIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQ 754 +R + V L + KT++F HA+++V+ + K Q Sbjct: 590 DRFVFNEHTIDLVLTTLMDEGIKIKGGEHIGKTIIFAQNRKHAEIIVKRFNELYPKFGAQ 649 Query: 755 LEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKV 814 ++ D T+IT F + +P I V+VD++ TG+D+P + N+VF ++V Sbjct: 650 ---GFCKRVVHTDD----YAPTVITDFETKEMPTITVSVDMMDTGIDVPEVVNLVFFKQV 702 Query: 815 RSRILYEQMKGRATRLCPE-----------VNKTSFKIFDCVDIYSTL---------ESV 854 +S++ + QM GR TRLC +K F IFD + + Sbjct: 703 KSKVKFWQMIGRGTRLCEGIHAQDKVSGEYEDKKHFFIFDWCGNFEFFRQEQKLAEGANP 762 Query: 855 DTMRPVVVRPKVELQTLVN----EITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLA 910 ++M+ V + + L + D + +++ + S ++ + ++ Sbjct: 763 ESMQEKVFKRQALLAQALQGADFASDDYQEWRVRVVQEMAVKVQSVKEPLTAAVKLHIRE 822 Query: 911 TFNRD-----------------------RSETIDKQVRRLDELCQDAAGVNFNG------ 941 R++ ++ R D L V +G Sbjct: 823 VDKFSQVPSYQVLEDVDIADLNKVAPLVRADGEEELSLRFDALMYAYMVVLISGTNTENH 882 Query: 942 -------------------------FASRLREKGPHWSAEVFNKLPGFIARLEKLKTDIN 976 R+ +G SA + + + +K I Sbjct: 883 RTRVVGIAVRLQNKASIPQVREKMDLLKRVTSEGFLESASLITLEEVRVELRDLMKFLIG 942 Query: 977 NLNDAPIFLDIDDEVVSV--KSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRD 1034 + + + D VV + +D+ + ++ N + N+ Sbjct: 943 DSRPLMVETRVTDSVVGRCEGDAISPKEDFEDYKLKVSRYIAQNANHTVIAKIHHNQ--Q 1000 Query: 1035 LTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVD 1094 +T L EL+ F + E+ R A+ +T + ++ G AA+ Sbjct: 1001 MTSFELNELERIFTVELGNEADYRAAYGDTPFGKLVRQVAGLSHEAAM------------ 1048 Query: 1095 HALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDD-- 1152 A G+ S +Q+ ++ ++ ++ +D F + R FD Sbjct: 1049 DAFAEFLGDESLSRQQMDFVHKIVDYVETNGFMDLADLGKPPFDQ---PQSFVRLFDGRR 1105 Query: 1153 --NLDTLLGKFSDY 1164 L ++ +D Sbjct: 1106 QRRLVQIIQSVNDN 1119 >UniRef50_C4ZF20 Type I restriction-modification system R subunit (Endonuclease) n=22 Tax=Firmicutes RepID=C4ZF20_EUBR3 Length = 1116 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 232/1261 (18%), Positives = 428/1261 (33%), Gaps = 256/1261 (20%) Query: 4 KSNFEFL--KGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLG---LLLNIPP 58 ++NF++L K A AE + P T I R E + + L++P Sbjct: 2 ETNFDYLLKKEEYADFAKQAVEAEKSLSISPATCAILSRRALELAVRFVFSYDAELSLPY 61 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVH-EYHNDLNDAQMCLRLGFRLAVW 117 +N L+ E ++ + + +GN AVH + ++A + LR F W Sbjct: 62 RDNVSSLIHEPTFRRIIEPRLFPMLKYTIHLGNVAVHTNNNIGRDEAIIALRDLFEFCDW 121 Query: 118 YYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVA 177 +++YD E Y + +L + + E + + ++ +KL + Sbjct: 122 IDYSYSREYD------------EKTYDESILASGNEKRIKADELMKLYEGLSSKDKKLES 169 Query: 178 LNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRT 237 + E ++AK+ Q K + Sbjct: 170 VLKE-------------------------NEELREQMAKKRSQNVKTREFHVDT------ 198 Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 +SE E+R ID L++AGW G N E TG + G+ Sbjct: 199 --ISEAETRKRYIDVALKEAGWVI---------------GRNVTEEEPVTGMPNSTGTGY 241 Query: 297 ADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 DYVL+ P+AVVEAK+ ++D ++ Y+ C N + R Sbjct: 242 VDYVLWGKDNLPLAVVEAKKASVDAMVGSQQAKLYADCLQNKYNRR-------------- 287 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 P + TNG E+ + D + + + Sbjct: 288 -------------------PLIFITNGFEF---------FYTNDYMG--YPRREVSGFFT 317 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 EEL L + + + ++ R YQ++AV AV AI +++L+ ATG+ Sbjct: 318 QEELQ--LEMDGRTSRIPLENIRISDDITNRPYQKEAVTAVCDAITNKHRKMLIVQATGS 375 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKTR +I+++ L + K ILFL DR++L +QA + + + N + + Sbjct: 376 GKTRVSISIVDVLRRHNYVKNILFLADRKALVKQAKNNYTNLLPDLSCCNLLDN------ 429 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEP-----MPVARYDCIVVDEAHRGYILDKEQTEGE 590 K +S ++ +T +++ + + I+ DE HR Sbjct: 430 KDDPESCRMIFSTYPTMMNAIDERKNKYGEKLFSPGHFQLIICDEVHRSIY--------- 480 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAV 642 Y+ I ++FDA+ + +TATP +T +F G P + Y AV Sbjct: 481 ----------KKYQEIFEYFDAMLLGMTATPKNEIDKNTYGVFDLERGVPTFAYELEKAV 530 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 +G+L++ + ++ + G++ + E+ + +D D N L Sbjct: 531 EEGYLVNYSTL-EYKSKIMESGIHYDELSDEEKEEYEDTFSDDDTV-GDDISGEAVNTWL 588 Query: 703 VIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 V EL KT++F + HA +V+ F P+ D Sbjct: 589 FNADTIDKVLRELMEKGLKIEGGDKLGKTIIFAKNSLHAQAIVKRFNKLF----PEYGGD 644 Query: 759 AIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 I +I D + ++I F+ +++P I V+VD+L TG+DIP I N+VF +KV+S Sbjct: 645 FIKRI----DYSIKYSDSLIDEFSTSDKMPQIAVSVDMLDTGIDIPEILNLVFFKKVKSY 700 Query: 818 ILYEQMKGRATRLCPEV-----NKTSFKIFDCVDIYSTL--------------------- 851 + QM GR TRLCP + +K F IFD + + Sbjct: 701 AKFWQMIGRGTRLCPNLLGEGMDKERFLIFDFCNNFEYFRVNKNGAENGITESLNEKIYN 760 Query: 852 ---ESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIG 908 + V ++ V + D + + SF H + V + Sbjct: 761 TKAQIVRELQAPVYSGDEIYADYRKSLVDDLKEDVISLNDDSFMVKRHLRYVEFFRASSS 820 Query: 909 LATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARL 968 I + + L ++ + + G S + + + + Sbjct: 821 WDNLETIEISDIREHIAPLIRPKKEDELARRFDYLVYSIDLGLLQSKSIQSPVNIVVQTA 880 Query: 969 EKLKTDINNLNDAPIFLDID----------------DEVVSVKSLYGDY----------- 1001 EKL + I+ D V Y Sbjct: 881 EKLSAKYSIPQVEKKKEIIEKVQTNEFWDKVTIIELDTVREALRGLLQYLDRQVRPIYYT 940 Query: 1002 ------------------DTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVEL 1043 + +++ + + ++ + + N + LT L EL Sbjct: 941 NFTDSITDGTPGEPLYGGNDLKNYRKKVEFYLKEHSDKLSVYKLKNN--KKLTETDLREL 998 Query: 1044 QEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGE 1103 + + + K + ET + +++G R A V+ A + E Sbjct: 999 ERILWTELGSKEDYIKEYGETPIGRLVRKIVGVDRAA------------VNEAFSCFMSE 1046 Query: 1104 NDWSSEQLSWLDRLAQALKEKVVL-DDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFS 1162 + Q+ +++ + + + D+ V F G L + ++ + Sbjct: 1047 ERLNINQMRFVNLIVDYIVANGNIEDNKVLMGEPFKSVGSITTLFKDDMSTAKQIMEIVN 1106 Query: 1163 D 1163 Sbjct: 1107 Q 1107 >UniRef50_B4RYU7 Type I site-specific restriction-modification system, R (Restriction) subunit and related helicase n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RYU7_ALTMD Length = 1141 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 245/1265 (19%), Positives = 429/1265 (33%), Gaps = 241/1265 (19%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIP-PCE 60 SNFEFLK + A AE +P ++ R E T K + L P Sbjct: 2 SNFEFLK-EWPQLHEHAVIAEQQVNAEPRSSCFYSRYTLERTVKWMFEFDSWLQEPKYDN 60 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVH-EYHNDLNDAQMCLRLGFRLAVWYY 119 + + L+ + + N+ ++R GN AVH E ++ L+ W+Y Sbjct: 61 SLNTLINDPDFKRSLGSNVFPKIKAVQRAGNNAVHSERKVSAAESIQTLKELHHFLYWFY 120 Query: 120 RLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALN 179 R T + +F + Q++ + V ++L AL Sbjct: 121 RTYTSNKPPTDQLFDTAKIP----------NTVQVDANL---------VMNSAKQLKALQ 161 Query: 180 GYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLN 239 ++ + K +E + Q A AL+ +L A++A+ + +Q +K + N Sbjct: 162 KQLSERDEKHKERQDQLLAENEALKKELEAHKAKVAEDKK----------QNQQVKDSHN 211 Query: 240 LSEEESRFLI-DAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 +E E+R I D L++AGW K G G+ D Sbjct: 212 YNEAETRKFIIDQYLKEAGWDVTKPNTVEFKV---------------LGMPNNKGVGYVD 256 Query: 299 YVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 VL+ KP+AVVE+KR +D ++ Y+ C + + + Sbjct: 257 NVLWGSDGKPLAVVESKRTTVDATQGRQQAVLYADCLEKAYGQR---------------- 300 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 P Y TNG E DT+ +A+ +H + Sbjct: 301 -----------------PLIYYTNGYEIHF------------WDDTQQPPRAVQGFHNRD 331 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 E+ ++ + R YQ A+++V + Q+ LL MATGTGK Sbjct: 332 EMQRIIDRRALRVPLPGVAINSDIAGKDRPYQTLAIQSVCERFTLNQRRSLLVMATGTGK 391 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TRT IA++ L+++ K +LFL DR +L QA F L Sbjct: 392 TRTTIALVDVLMRAGWVKNVLFLADRNALVNQAKKEFSKLLPKTSPEILTSATDTLR--- 448 Query: 538 PEDSTKIHVATVQSLVK--RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 +++++T +++ D + +D ++VDEAHR Sbjct: 449 ----GRLYLSTYNTMMNLLSVDARDRLFGIGHFDLVIVDEAHRSIY-------------- 490 Query: 596 QLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFL 647 YR I ++FDA+ + LTATP +T IF G+P Y Y A+ D L Sbjct: 491 -----KKYRYIFEYFDALLLGLTATPKSDIDKNTYDIFDQPDGDPTYAYELEEAIADKKL 545 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAF 707 + + + +EG+ S + + + L + + ++ N+ L Sbjct: 546 VPPK-DVAVDLGFIREGIKYSDL---SKDEKEEWESKEELVERDEVLPSEVNKFLFNKPT 601 Query: 708 NRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI 763 L KT++F N HA+ VV+ + A YP+ + I Sbjct: 602 VDKALEVLFERGIRVAGGERLGKTIIFAANNKHAEFVVDRINA----NYPKYKGKLARVI 657 Query: 764 TGDADKDARKVQTMITRFNKERLPN-------IVVTVDLLTTGVDIPSICNIVFLRKVRS 816 T + ++I F E+ P I V+VD+L TGVD+P + N++F + ++S Sbjct: 658 TYK----EKYADSLIEEFKGEKKPADPNCPLSIAVSVDMLDTGVDVPEVVNLMFFKVIKS 713 Query: 817 RILYEQMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTL 871 ++ + QM GR TRLC P+ +K FK+FDC + E + Sbjct: 714 KVKFLQMLGRGTRLCESLFGPDDDKVFFKVFDCCKNFEYFEMQPEGAKDSGSKTLSQAIF 773 Query: 872 VNEITDSETYKITEA---DGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLD 928 + S+ K E DG E L ++ + R R + ++K + Sbjct: 774 EKRLILSQHLKSNEQFGTDGAELQRSLVENLQNRVAGMNLDNFIVRPRRKVVEKYQK--P 831 Query: 929 ELCQDAAGVNFNGFASRLREKGPHWS-AEVFNKLPGFIARLEK--LKTDINNLNDAPIFL 985 E Q N + + E K R + L + + I Sbjct: 832 ETWQHLTDENVGEIQKHISDLPTEAEPIEPREKDEELALRFDHMLLTMQLAMVEKTGISD 891 Query: 986 DIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQE 1045 D++V++ + + E + + + + TRK L L Sbjct: 892 YYRDKLVNIAAKLESKTSVPAIAEEVE--WLEYIQSANFWTDLTLDELEQTRKRLRLLMR 949 Query: 1046 WFDRQH-------------------------------FEESSLRKAWKETRNEDIAARL- 1073 + D++ + KE ++ RL Sbjct: 950 FMDKEGTGYVYTNFQDELLSVNENEGIYVPTSGNELQLYRKRVESYIKENQDNLTITRLR 1009 Query: 1074 --------------IGHIRRAAVGDALKPFEERV---------------------DHALT 1098 + + + +GD L ++E + A Sbjct: 1010 KNLPITRLDLDELDVKLMAVSGIGD-LTQYQETIHPDKSLGVFIRELVGMDRGAAKEAFA 1068 Query: 1099 RIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFD-DNLDTL 1157 E ++++QL +++ + L + V+ F + F D + Sbjct: 1069 DYLDEAKFNAQQLRFINTIIDYLTQNGVMSAKQLAQPPFSDI-HYEGITGVFSLDEAIQI 1127 Query: 1158 LGKFS 1162 Sbjct: 1128 RDTLK 1132 >UniRef50_UPI0001B4DA31 type III restriction enzyme, res subunit n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B4DA31 Length = 1196 Score = 565 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 274/1262 (21%), Positives = 456/1262 (36%), Gaps = 187/1262 (14%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP-PCE 60 SNF L + C+AE+ DP+ ++K R+FGE +HL LL + P Sbjct: 22 AGSSNFGHLLRHEPLLVTLGCSAESYVHSDPHAAMVKARLFGEVMTRHLVTLLGLTVPGS 81 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 Q D + L + + + + F +R GN+A HEY+ ++ +A + L FRL W +R Sbjct: 82 RQVDRINALVRADVLVPQVKAWFEAVRTTGNKAAHEYYANVREALQSVELCFRLGDWLHR 141 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQ------QQK 174 + + D VF+ P E + +++LEQ E + ++E +Q Sbjct: 142 SLDQS-DTTHRVFLAPAPPSAPPAPESVADQRELEQLRTELDAYRRKLEEARLSYDGKQS 200 Query: 175 LVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHK------- 227 + + +A L L A+L+EK EL + R A Sbjct: 201 RLEREQAAREQAEAELARAEAERAALHDLIAELSEKITELTAPAMESRSAARPLDGASRR 260 Query: 228 --EITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWP 285 I +SE + R +D L KAGW + + G A+ E Sbjct: 261 DEFIAHAQKAARPPMSEAQVRAELDRILEKAGWVVQDDSAKNLF-----AGKGVAVREVS 315 Query: 286 TGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLE 345 T G ADY+L+V + + V+EAKR D+ A + ++ RY+ Sbjct: 316 TA------VGRADYLLYVDQRLVGVIEAKREGADLEAAMEQAARYATGL----------- 358 Query: 346 HYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRN 405 + R +PF Y +G R + + D Sbjct: 359 ----------------TRSQQLSAWRASLPFRYVADGNTVR----------FHNALDPSP 392 Query: 406 MSKALPEWHRPEELLEMLGSE-------PQKQNQWFADNPGMSELGLRYYQEDAVRAVEK 458 ++ + HRP+ + + + + LR QE A+ +E Sbjct: 393 RTREVFAVHRPDTIARWIEEAETDPTAPTLRARMRRLPQTFLDAKDLRPAQEKAINGLEL 452 Query: 459 AIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTR 518 ++ K L+ MATG GKT T ++ +RL++ KRILFLVDR +LG QA FE+ Sbjct: 453 SLAKDDPRALIQMATGAGKTYTVVSESYRLLKHAGAKRILFLVDRNNLGSQAATEFENFD 512 Query: 519 INGD--TFNSIFDIKGLTDKFPEDSTKIHVATVQSL-----------VKRTLQSDEPMP- 564 D F ++ ++ L S + V+TVQ L ++ + Sbjct: 513 TPDDGRKFTELYVVQRLAGDTVLGSAHVVVSTVQRLWLALTGRPVPSADSEDEALDRYDL 572 Query: 565 --------------VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF 610 +D IVVDE HR +R +L++F Sbjct: 573 IDEPVQVGYNPDLAPESFDLIVVDECHRSIYG-------------------KWRAVLEYF 613 Query: 611 DAVKIALTATPALHTVQ-IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSK 669 DA + LTATP T F V Y Y AV D +D D +I T + G + Sbjct: 614 DAHLVGLTATPVKQTFGFFFQNLVSEYPYEQAVADRVNVDFDV-FRIRTELGENGGTIPA 672 Query: 670 GEQVERISPQGEVIND-TLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL--------- 719 V + LE+D +++ + R ++ + V +L Sbjct: 673 ETVVPMRERKTRRERYQELEEDLEWKASQLGRQVISKGQLKLVVETFREHLFTDIFPPVG 732 Query: 720 ------DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARK 773 T + KTL+F V + HAD +V+ +R F + D KIT A++ Sbjct: 733 EGEAQRSRTTAPKTLIFAVDDNHADEIVDMVRQVFGE-----CDDFCRKIT----HAAKR 783 Query: 774 VQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE 833 +I F I VTVD++ TG DIP + + FLR V+S +EQMKGR +R Sbjct: 784 PAELIKAFRNSPELRIAVTVDMIATGTDIPPLECVFFLRDVKSWAYFEQMKGRGSRTVDP 843 Query: 834 VN----------KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKI 883 K F I D V + + + K+ L+ L+ + Sbjct: 844 AEFQAVTPDAEVKERFVIVDAVGVTDSPRVDARPLNRISERKIPLERLMAKSA------- 896 Query: 884 TEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFA 943 G + E L +L R+ T + + V+ + Sbjct: 897 ----GLAMTEDEVATLAGRLARLDQQLTPEEREEIEELAGQPLRKIVGGLVSSVDPDQQE 952 Query: 944 SRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLND--APIFLDIDDEVVSVKSLYGDY 1001 R G + IA +L+ + ++ + ++ + V Sbjct: 953 RARRIGGEKQVRQEMLDALKPIASNGELRDRLMSMRRAHDIVIDEVSVDQVKEVRGITAD 1012 Query: 1002 DTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTR--KGLVELQEWFDRQHF--EESSL 1057 + + ++ ++ + AL + RD + L +L +R F S L Sbjct: 1013 ELAIRRVSSWKQYIKDHQDEIAALNLAFSERRDPKEVYRRLRDLARKIERPPFQWTPSRL 1072 Query: 1058 RKAWKET-------RNEDIAARLIGHIR-RAAVGDALKPFEERVDHALTRIKGEND---- 1105 A+ + R LIG +R + ++P+ V+ + + + Sbjct: 1073 YDAYVQLGKATRHPRGVAGVVDLIGLLRFELGLDQEVRPYRALVEERYAAWRAQQEQAGA 1132 Query: 1106 -WSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFD-DNLDTLLGKFSD 1163 +S +Q+ WLDR+ + ++ D K F RGG R F D +L + Sbjct: 1133 VFSEDQVWWLDRMVDVIATDAAIEPDHLKDVPFIERGGVDGFLREFGADRGAEILDELGR 1192 Query: 1164 YI 1165 + Sbjct: 1193 EL 1194 >UniRef50_D1XTB5 Type III restriction protein res subunit n=2 Tax=Streptomyces RepID=D1XTB5_9ACTO Length = 1153 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 239/1173 (20%), Positives = 417/1173 (35%), Gaps = 200/1173 (17%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNIPPCEN 61 SNF FL+ + A AE DP + R E + L +P + Sbjct: 2 SNFGFLQAEWPGLHREAVHAERLAYADPRASAFYARRVLELAVTWMFEADDALKLPYQND 61 Query: 62 QHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN-DLNDAQMCLRLGFRLAVWYYR 120 L+ E + I + +RR GN AVH DA + F + W R Sbjct: 62 LAALIAEPTLVKVAGPAIRAKMDVIRRQGNAAVHRKTPITPKDAVRTVAELFHVLYWMAR 121 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 T+D + + + + + + +VR QAE+ Q +K + Sbjct: 122 TYTRDQA---------QLPVSTLAFDTALIPRPVPAEVR--VAKQAELRVQAEKYAEQDT 170 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 +A K Q+ +A+ A ++A A A+ T + Sbjct: 171 ALAAERKKNQDLDAEIADLRAQVKAAKAANEAQ---------------------PDTHDY 209 Query: 241 SEEESRFLI-DAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 +E+E+R LI D L++AGW D R +G DY Sbjct: 210 NEDETRKLIIDLLLKEAGWALDLPRDREYP------------VTGLPTSAAPSGKGKVDY 257 Query: 300 VLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ KP+AVVEAKR D ++ Y+ + F + Sbjct: 258 VLWDDDGKPLAVVEAKRTTRDPKQGKYQATLYADALEAQFKQR----------------- 300 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P + TNG D + + ++ +E Sbjct: 301 ----------------PVIFYTNGYRTYL------------FDDLNYPPREVQGFYTKDE 332 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ-QEILLAMATGTGK 477 L ++ ++N A P ++ R+YQ A+R + + K ++ LL MATG+GK Sbjct: 333 LRLLVQRRASRRN--LAKMPINEQIAGRHYQSRAIRRIADSFEKDSLRQALLVMATGSGK 390 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TRT I++ ++++ KRILFL DR++L +QA F+ + N + + Sbjct: 391 TRTVISLSDLMMRANWAKRILFLADRKALVKQATNEFKKHLPGANPVNLLEE-------- 442 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEP----MPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 + +++ V+T +++ Q+D +D IV+DEAHR Sbjct: 443 KDPHSRVFVSTYPTMMNLIDQTDADGRRIFGPGFFDLIVIDEAHRSIY------------ 490 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDG 645 Y I D+FD++ + LTATP +T + F G P Y+ AV +G Sbjct: 491 -------QRYGAIFDYFDSLLVGLTATPKDEVDRNTYRRFELEDGVPTDVYSLDEAVAEG 543 Query: 646 FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIP 705 +L+ + + + + G+ + ++ N+ + + + N+ L Sbjct: 544 YLVAPRA-VDVPLKFQRGGIKYDDLSEEDKEKWDETEWNEDGDVPDEITTEELNKYLFNA 602 Query: 706 AFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 V L + KT+VF N HA+ + E YP L+ Sbjct: 603 DTVDKVLQTLMTHGLKVDGGDKLGKTIVFAANNNHAEFIAERFDK----NYPHLKGAFAQ 658 Query: 762 KITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 IT Q++I +F+ LP I ++VD+L TG+D+P + N+VF + VRS+ + Sbjct: 659 VIT----YRKEYAQSLIDKFSDAAELPQIAISVDMLDTGIDVPEVVNLVFFKLVRSKTKF 714 Query: 821 EQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEI 875 QM GR TRL P+ +K F +FD V P +L I Sbjct: 715 WQMIGRGTRLAPDLFGPNRSKDGFLVFDLCQNIEFFNQNLMRAEGKVAP-----SLSQRI 769 Query: 876 TDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAA 935 + + D S +H ++A G + + R + + + Sbjct: 770 FERRADLLLALDDSSARDHQAAAVIATRPESDGTVSDSGLRWDLATRLHDEVT------- 822 Query: 936 GVNFNGFASRLREKGPHWSAEVF-------NKLPGFIARLEKLKTDINNLNDAPIFLDID 988 +N F R + A+ + I L L T + +DA Sbjct: 823 AMNPENFLVRPHREQVENFADFDAWLEFTPDAHGEVIDHLAGLPTAFRDKDDAGEEAKRF 882 Query: 989 DEV-----VSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVE- 1042 D + ++V + + +D ++ S + PA++A ++ + Sbjct: 883 DLLALRLQLAVANGDPGFTRLRDQVQEIASTLLDQLT-IPAIKAQQVLLDEVAGDEWWQD 941 Query: 1043 -----LQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAA----VGDALKPFEERV 1093 L+ R + K + D L +G L FE+++ Sbjct: 942 VTLPLLETMRRRLRGLVRLIEKTKRGIVYTDFEDELGELTAATLTGMEIGTDLTRFEQKI 1001 Query: 1094 D---------HALTRIKGENDWSSEQLSWLDRL 1117 A+ +I+ ++ LS L+++ Sbjct: 1002 RIYLNTHQDQLAVQKIRRNKQITALDLSELEKI 1034 Score = 70.6 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 54/349 (15%), Positives = 95/349 (27%), Gaps = 30/349 (8%) Query: 827 ATRLCPEV---NKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEI-TDSETYK 882 ATRL EV N +F + + D E+ + + T Sbjct: 814 ATRLHDEVTAMNPENFLVRPHREQVENFADFDAWLEFTPDAHGEVIDHLAGLPTAFRDKD 873 Query: 883 ITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGF 942 + + F + +A G E + +L A V + Sbjct: 874 DAGEEAKRFDLLALRLQLAVANGDPGFTRLRDQVQEIASTLLDQLTIPAIKAQQVLLDEV 933 Query: 943 ASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYD 1002 A W L RL L I ++ D +DE+ + + Sbjct: 934 AG-----DEWWQDVTLPLLETMRRRLRGLVRLIEKTKRGIVYTDFEDELGELTAATLTGM 988 Query: 1003 TPQDFLEAFDSLVQ----RSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLR 1058 L F+ ++ + + N + +T L EL++ F S+ Sbjct: 989 EIGTDLTRFEQKIRIYLNTHQDQLAVQKIRRN--KQITALDLSELEKIFVEAGLGTSTDI 1046 Query: 1059 KAWKETRNED--IAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDR 1116 KE + L G R AA A + ++ QL +++ Sbjct: 1047 DYIKEAKGGLGLFLRSLTGLEREAAA------------LAFDSFQQGKTLTANQLRFVNE 1094 Query: 1117 LAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 L L +D D F + F + ++ I Sbjct: 1095 LIDYLARNGTIDVDALYESPFTAL-APTGPEAIFREAEVDIMVSVIHSI 1142 >UniRef50_Q0ATD1 Type III restriction enzyme, res subunit n=4 Tax=Proteobacteria RepID=Q0ATD1_MARMM Length = 1137 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 247/1252 (19%), Positives = 423/1252 (33%), Gaps = 231/1252 (18%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE- 60 M NFE L+ + AE D + L+K+R+F E K + L +P + Sbjct: 1 MKSVNFEILRKDWPELAQLGAFAETYAHTDAASALVKLRLFAENLTKDIYRDLRLPREDR 60 Query: 61 -NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYY 119 + D+L + + ++ H +R GN+A H + A L+ LA W Sbjct: 61 MSFVDMLGGSAFQSAIPRVVIDKLHAIRVHGNKAAHGEQATIKTALFLLKEAHGLARWLL 120 Query: 120 RLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALN 179 + +P+F + + REK + + AQ+ ++ L Sbjct: 121 VAFKRQKADDLPLFKELDNPVQGASA---------TELQREKKRAMERLAAQEAQMQVLL 171 Query: 180 GYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLN 239 + K + EA+T+ AA E L Sbjct: 172 KELEAEREKAKAAEAKTEELSAAREEGDKA-------------------------ASELE 206 Query: 240 LSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 E +R +ID L AGW + + + +A+ PT +G+ D Sbjct: 207 FDEATTRARIIDMMLASAGWDVAN-----GLKSTEQVAKELEVADQPTE----TGKGYVD 257 Query: 299 YVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 YVL P+AVVEAKR + + ++ Y+ + + Sbjct: 258 YVLRDGDGMPLAVVEAKRTSKNAELGRKQAELYANALEKQYGIR---------------- 301 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 P + TNG + IW D + + ++ P+ Sbjct: 302 -----------------PAIFYTNGYD----------IWLWDDAGGFP-PRKVYGYYSPD 333 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 L + L + Q P ++ R YQ + ++ V + ++ L+ ATGTGK Sbjct: 334 SL-QYLVRFQRANKQPLTALPPNKDIAGRLYQVETIKRVSERFEDKHRKALIVQATGTGK 392 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TR AIA+ LI+++ KR+LFL DRR L +QA AF + I+G Sbjct: 393 TRVAIALSELLIRAKWAKRVLFLCDRRELRKQAKNAFGNFLKGEPIRVVNSAIRG----- 447 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 + +I VAT L+ + V +D I+ DE+HR Sbjct: 448 -NANERIFVATY----PAMLKVYQAFDVGFFDLIIADESHRSIY---------------- 486 Query: 598 DYVSAYRRILDHFDAVKIALTATPA----LHTVQIFG----EPVYRYTYRTAVIDGFLID 649 + Y + +FD ++ LTATP T +F P Y A+ +G+L Sbjct: 487 ---NVYGDLFYYFDCPQVGLTATPVDFVTRSTFDLFKCEGQNPTANYELEQAIEEGYLTP 543 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 + + T+ +EG+ L + +R + + + D D+ ++ + NR Sbjct: 544 FEV-YEHTTKFLREGIRLEGLTKAQRQQLEDQGED---PDQYDYSSEVVDKAIFNKDTNR 599 Query: 710 AVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITG 765 AV L S KT++F ++AHA LR F + YPQ I Sbjct: 600 AVLRNLMENGLRDASGQTIGKTIIFARSHAHAL----LLREVFDELYPQYGGRFCQVI-- 653 Query: 766 DADKDARKVQTMITRFN---KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 D + + +I F + I ++VD+L TG+D+P I N+VF + VRS + + Q Sbjct: 654 --DNYDPRAEQLIDDFKGDGANKDLTIAISVDMLDTGIDVPEILNLVFAKPVRSPVKFWQ 711 Query: 823 MKGRATRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITD 877 M GR TRLC P +KT F+IFD + E +P RP L + E Sbjct: 712 MVGRGTRLCEDLFGPGQHKTVFRIFDHWGNFERFE--TGYKPAEPRPSKSLLQQLFEQRI 769 Query: 878 SETYKITEADGRSFAEHSHEQLVAKLQRIIG-----LATFNRDRSETIDKQVRRLDELCQ 932 E + + A + + + R + V+ Sbjct: 770 DLAETALRKSEIPVFETVVQLIAADVSALPENSIAVREKWREKRQFADLETVKSFAPTTV 829 Query: 933 DAAGVN------------------FNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTD 974 A F+ +RL+ SAEV + + RL+ L+ Sbjct: 830 AALRQTIAPLMQWRDVRGKTEAHAFDLLIARLQTAALQGSAEVEDLRADMMGRLDTLQMH 889 Query: 975 INNLNDAPIFLDIDDEVVSVKSLYGDYDTPQD-------FLEAFDSLVQRSPNAQPALQA 1027 +N + + + + + P D E +++ PA Sbjct: 890 LNPVRERAEIIKEV-----KSAAFWSDLKPLDLERVRIPLREIIHHHDRKAGPKVPAKVI 944 Query: 1028 ----------VINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAAR----- 1072 R T + ++ D + + ++ RN + Sbjct: 945 DVEEEASEFQYGRRATSYTANEMKAFKQAVDAELKKHIETNPILQKIRNGEPVTDADLQA 1004 Query: 1073 LIGHI-------RRAAVGDALKPFEE---------------RVDHALTRIKGEND-WSSE 1109 ++ + A + + P E V + +++ Sbjct: 1005 IVSLVLTQNPDLSEAQLNEFFSPTAENLLFKLREMTGLEATTVRDRFADFVNAHPTLTAK 1064 Query: 1110 QLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKF 1161 Q +L+ L L + V+ D F FD+ L+ + Sbjct: 1065 QTRFLNLLQNHLIKFGVITVDRLYDQPFTVV-DADGPDGVFDE--PDLMNEL 1113 >UniRef50_C0VSE4 Type I site-specific deoxyribonuclease n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSE4_9CORY Length = 1195 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 246/1179 (20%), Positives = 418/1179 (35%), Gaps = 155/1179 (13%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE--NQ 62 +NF F A E N +P + R E +H+ L I Sbjct: 12 TNFAFAVDAFGELGVDAIRVERNALGNPAMATMFARPILERLVRHIWRLRKIGDFHGRKL 71 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHE-YHNDLNDAQMCLRLGFRLAVWYYRL 121 DLL + A+ + I + H +R GN A H A + F + W Sbjct: 72 IDLLTDPRFEAYTTEQIRAKLHAIRLAGNDASHGARRITPEQAVRVTQQLFDVLAWAVAT 131 Query: 122 VTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLE--QQVREKAQTQAEVEAQQQKLVALN 179 + + + E + E A E+E + ++L Sbjct: 132 HSPHPELQPTTPFNNDYLRPPAGTPAPKRASDAEVKKLAEELAGKDRELEGKDKELAEQA 191 Query: 180 GYIAILEGKQQETEAQTQARLAALEAQL--AEKNAELAKQTEQERKAYHKEITDQAIKRT 237 ++ E ++Q+ A EA+ AE+ A L K+ E+E +E+ Q + Sbjct: 192 LLLSKAEQEKQDQAEAHARERARFEAKAKSAEEQAALTKKLEEEIAKLREELVAQQARLA 251 Query: 238 LNL--------SEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGK 288 + SE ++R LID QL +AG+ S L V + P Sbjct: 252 VPQKQVLPPTVSEAQTRKDLIDPQLERAGFAFGSSIL-----------VEYPVTGMPLSA 300 Query: 289 DETGNQGFADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHY 347 + QG+ DYVL + +A+VEAK++ + A + ++ Y+ C ++ Sbjct: 301 ENHTGQGYVDYVLVGPDGRKLALVEAKKSAQSMNAGVEQARLYADCLEHETGLR------ 354 Query: 348 SPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMS 407 P + TNG + S + Sbjct: 355 ---------------------------PVIFLTNGYHIQLVDDAAS----LPGTGRGYGA 383 Query: 408 KALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIV-KGQQE 466 + + + ++L M+ + A P +++ R YQ + +R V +A +G++ Sbjct: 384 REVEGFPTADQLRTMIARRAGRL--PLASEPVDAKIAGRDYQLEMIRNVTEAFDSEGRRR 441 Query: 467 ILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNS 526 LL MATGTGKTR A+A+ L +Q R+LFL DR++L QA AF+ + N Sbjct: 442 ALLVMATGTGKTRVAMALAKLLRGAQWVGRVLFLADRKALVAQACDAFKISYPECAPVNL 501 Query: 527 IFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS---DEPMPVARYDCIVVDEAHRGYILD 583 + D ++ +++ +T Q+++ + +D I++DEAHR Sbjct: 502 LED--------ADEVGEVYFSTYQTMMGLISDDGTSEAKFRPFDFDLIIIDEAHRSIY-- 551 Query: 584 KEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFG----EPVYR 635 +RRIL++FD+ + LTATP T +F EP Sbjct: 552 -----------------YRFRRILEYFDSYVVGLTATPKADIHHDTFALFHIDGREPTGN 594 Query: 636 YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ-----GEVINDTLEDD 690 Y+ A+ DG+L+ P + + + GV ++++ + D L Sbjct: 595 YSLEAAIKDGYLVPP-VPFKQDSLFLRAGVSYDDLSPEQKVAWDNQDWGTDEDGDALPPP 653 Query: 691 QDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQK---TLVFCVTNAHADMVVEELRAA 747 + NR L R V L + T++F T HAD+++EE+ Sbjct: 654 DGVSPGEINRILYNRDTIRKVVGNLIECGHKVDGDRLGETIIFARTQHHADLILEEINKH 713 Query: 748 FKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSIC 806 F P D IT R + I RF K + I ++VD+L TG+D+P + Sbjct: 714 F----PAFGGDGAAVITHST----RYAEAAIKRFKKIDGDLRIAISVDMLDTGIDVPEVV 765 Query: 807 NIVFLRKVRSRILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLESVDTMRPVV 861 N+VF + V S + QM GR TRLCP +K +F IFD P Sbjct: 766 NLVFFKPVYSPTKFWQMVGRGTRLCPNLFGPGRDKENFYIFDYCGNVEMFSGKPVTDPAG 825 Query: 862 VRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETID 921 R + L + E+D S + L KL ++ + Sbjct: 826 TRQATLSERLFVARA-QLIRLLDESDSLSAHSRLRDGLATKLHELV---------CSVPE 875 Query: 922 KQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKT-DINNLND 980 V + L AE LP EK I+ L Sbjct: 876 GHVLVRPSDRPVIHAFYTDSAWEHLSADDVTQLAEHVAHLPFTATVKEKPSAKQIDLLVL 935 Query: 981 APIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPAL------QAVINRPRD 1034 ++++ + T D L + VQ+ + + D Sbjct: 936 QLQLALLEEDASFAGNKQKLSTTAGDLLAVDLAPVQKHAAVLEQVADPAWWDGITLEDLD 995 Query: 1035 LTRKGLVELQEWFD--RQHFEESSLRKAWKETRNEDI----AARLIGHIR-RAAVGDALK 1087 + R + EL E+ ++F + + E ++ A+ IG R A + + L Sbjct: 996 IARVVIRELAEFIPKGERNFVDIDFEDTFGELEQTELSPVHASTFIGESRAEARLKEFLA 1055 Query: 1088 PFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVV 1126 + A+ +++ ++E + L+ L E+ V Sbjct: 1056 SHAQ--STAMQKLRTARPLTAEDMKALEMLLAEAGEETV 1092 >UniRef50_UPI000196AC3A hypothetical protein CATMIT_00264 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AC3A Length = 1116 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 247/1261 (19%), Positives = 435/1261 (34%), Gaps = 253/1261 (20%) Query: 2 MNKSNFEFLKG--VNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL---LNI 56 M NF FLK + AE P I R E ++ L + Sbjct: 1 MVLLNFTFLKNKTEFQDFASTCIEAEKGLMVSPANCAILTRRALEQAVHYMYKNDIDLQM 60 Query: 57 PPCENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLND-AQMCLRLGFRLA 115 P +N L+ E + I + +GN AVH + A + L +RL Sbjct: 61 PYRDNLSALVNEYTFKQIIPTEIYEGIRYVITLGNFAVHTSRKVKREEAVLALNNLYRLV 120 Query: 116 VWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKL 175 W DY +P F L Q + + + L++QVR+ Q Sbjct: 121 NWMNYSYGIDYQEQLPEF----DPTKLPDQTHMFVNKDLKEQVRDILNKQ---------- 166 Query: 176 VALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIK 235 + + + A+L +N EL KQ +RK E Sbjct: 167 ------------------KEKEEKQKEELARLVAENEELRKQGAAKRK----EDKAVEYV 204 Query: 236 RTLNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 + E +R L ID L++AGW D E+P T +Q Sbjct: 205 DVNKIPEWRTRKLYIDLMLKEAGWDFD----------------TNVEEEYPVHHMPTESQ 248 Query: 295 -GFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEV 352 GF DY+L K IAV+EAK+ ++D N++ Y+ C + + Sbjct: 249 DGFVDYILRGKTGKIIAVIEAKKTSVDPRVGRNQAKLYADCIEQEYGLR----------- 297 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 P + TNG E D + + Sbjct: 298 ----------------------PVIFYTNGFETFI------------WDDMMYPDRKISS 323 Query: 413 WHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMA 472 +E ++ +++ + + RYYQ++A+ + KG ++ LL MA Sbjct: 324 IFSQDETQLLIDRRDTRRS--ISKPVIQDAITNRYYQKEAIVRTCEDFEKGSRKALLVMA 381 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKG 532 TG+GKTR AI+++ L ++ K ILFL DR +L QA F + + T N + Sbjct: 382 TGSGKTRVAISLVDVLTKADWAKNILFLADRTALVNQAKKNFVNLLPSLTTCNLCEN--- 438 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTLQSDEP-----MPVARYDCIVVDEAHRGYILDKEQT 587 K + +++ +T +++ ++ +D I++DE+HR Sbjct: 439 ---KEDPEVSRMIFSTYPTMMNAIDETRSKDGNRLFTPGHFDLIILDESHRSVY------ 489 Query: 588 EGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYR 639 + Y+ I D+FDA+ I LTATP +T IF G P Y Y Y Sbjct: 490 -------------NKYKDIFDYFDALLIGLTATPKDSIGANTYSIFDLETGVPTYAYEYE 536 Query: 640 TAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFN 699 TAV D +L+ + + +EG+Y + E+ + D+ +D N Sbjct: 537 TAVKDKYLVSYHS-YETKMKFLEEGIYYDDLSEEEKKEFEEHF-----PDEDKITSSDMN 590 Query: 700 RGLVIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQL 755 + + V +L + K+++F HA+ + E YP+ Sbjct: 591 KFVFNINTIDTVIRDLMEHGIKIEGGDKIGKSIIFAANQNHANKIKERF----DILYPEY 646 Query: 756 EHDAIIKITGDADKDARKVQTMITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKV 814 + IT + + VQ I RF + P I ++VD+L TG+D+P I N+VF +KV Sbjct: 647 KGKIAEVITFNT----KFVQNAIDRFSKTDSYPQIAISVDMLDTGIDVPDIVNLVFFKKV 702 Query: 815 RSRILYEQMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLE----------------- 852 RS+ + QM GR TRL P +K F IFD + Sbjct: 703 RSKAKFWQMIGRGTRLRKDLFGPGDDKKGFLIFDYLGNMDYFRVDQRPEKSGIIESLSQR 762 Query: 853 ----SVDTMRPVVVR-PKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII 907 VD + + + +N+ + I + SF H + V + + Sbjct: 763 IYKLRVDILYALEQNASNQDYVDEINKQIKEMSGYIQGLNEDSFNVKLHLKYVHQYKNPD 822 Query: 908 GLATFNRDRSETIDKQVRRL---------------------------------------- 927 N + I ++ L Sbjct: 823 NWNNLNEMDTHYIKDELSSLVVIHDEDKRAKFFDRQLYMIEMAYLNHYDASQVINKVIMI 882 Query: 928 -DELCQDAAGVNFNGFASRLR--EKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIF 984 DEL + + A L+ + +W + L ++ L ++ Sbjct: 883 TDELYKKQTIPDIADNAEYLKCAKDPDYWKTANYFDLEVLREKIRNLVKYLDVGPKRDPI 942 Query: 985 LDI-DDEVVSVK--SLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLV 1041 +DE++ K + + + +++ E ++ + + + N+ +T + Sbjct: 943 DTHFEDEIIETKMNDAFYNDEGLENYKEKVQHYLKAHEDDEAIYKLRHNQV--ITPDEMK 1000 Query: 1042 ELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIK 1101 L+ + R + +T + +++G R+AA+ + +R Sbjct: 1001 HLENLLWIDLGSKDDYRLHFGDTPITRLIRKIVGLDRQAAMAE------------FSRFL 1048 Query: 1102 GENDWSSEQLSWLDRLAQALKEKVVL-DDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGK 1160 + +S Q+ +++ L + + + D V F G + L + + +L Sbjct: 1049 DDQSLNSRQIHFVELLVDYIVKNGFIEDKKVLLQDPFKSIGSMSALFKDKMNVAREILKT 1108 Query: 1161 F 1161 Sbjct: 1109 V 1109 >UniRef50_C2CT05 Type I site-specific deoxyribonuclease n=3 Tax=Corynebacterium RepID=C2CT05_CORST Length = 1212 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 234/1297 (18%), Positives = 419/1297 (32%), Gaps = 249/1297 (19%) Query: 11 KGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCE--NQHDLLRE 68 + V Y E DP + R E H+ ++ + ++ R+ Sbjct: 2 RYVWPTAYEECLKVERFVDADPVISCFYARKVLERVVNHIWAFRSLGDTGYLSLAEMTRD 61 Query: 69 LGKIAFV-DDNILSVFHKLRRIGNQAVHEYH-------NDLNDAQMCLRLGFRLAVWYYR 120 G + V ++ +L LR+ GN A H A+ + + L W R Sbjct: 62 RGFLQCVKNETMLRKMTILRKSGNDAAHADDMEGKQAPATSQKARAVVAHLYDLMAWAVR 121 Query: 121 LVTKDYDFPVPVFVLPERG--------------ENLYHQEVLTLKQQLEQQVREKAQTQA 166 + + + + ++L QQ E + + Sbjct: 122 YHSANPKAAPGPQATFDTSLLGQSAADASGIHVAGRSQAQTAAYLKKLAQQDEELKKNRL 181 Query: 167 EVEAQQQKLVALNG----YIAILEGKQQETEAQTQARLAA--------------LEAQLA 208 ++ ++ A E K++ E + +A LA +E +LA Sbjct: 182 LLDEAKEAAREAEEKRLREAAQFELKRRSAELRAKADLADAKEQAEAERAAAQQVEEKLA 241 Query: 209 EKNAELAKQTEQERKAYHKEITDQAIKR-TLNLSEEESRF-LIDAQLRKAGWQADSKTLR 266 K L + ++ A + A L + E E+R LID L AG+ DS T Sbjct: 242 AKIEALEAKLAEQEAAAAERAGAGAQPDAPLAIGEAETRRQLIDPMLEVAGFSGDSVTRE 301 Query: 267 FSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLN 325 G G+ADYVL+ P+AV+EAK++ + + Sbjct: 302 LELH----------------GMPNPSGVGYADYVLWDDDRTPLAVIEAKKSMESMSVGSH 345 Query: 326 ESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREY 385 + Y+ C + + P TNG Sbjct: 346 QVKLYADCIEREYGTR---------------------------------PVMLCTNGYH- 371 Query: 386 RATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELG- 444 + ++ + + ++L M+G + ++ P +E+ Sbjct: 372 ---IDLIDDAANLPGTGVGYPAREVEGFPTAQQLRRMIGRRTMRA--LLSETPVDTEIAG 426 Query: 445 --LRYYQEDAVRAVEKAIVKGQQE-ILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLV 501 R YQ +A+RAV + + ++ LL MATGTGKTR A+A L Q+ ++LFL Sbjct: 427 GGARTYQLEAIRAVTETLEARRRRQALLVMATGTGKTRVAVATARLLRQAGWVGKVLFLA 486 Query: 502 DRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE 561 DR +L QA AF N I + PE ++V T +++ + Sbjct: 487 DRTALVNQAHKAFVSMYAESTPVNLIKN--------PEQVGDVYVTTYNTMMNLIGDDGD 538 Query: 562 ---PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALT 618 +D I+VDEAHR + ++RIL++FDA + LT Sbjct: 539 TPAKFGPFDFDLIIVDEAHRSVY-------------------NRFKRILEYFDAYVVGLT 579 Query: 619 ATPA----LHTVQIFG----EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKG 670 ATP T +F P + Y+ AV DG L+ + + + G+ + Sbjct: 580 ATPKSEIDHDTYALFEMEDKTPSFEYSLDEAVADGNLVPFKTA-RQDSLFLRRGMSYDEL 638 Query: 671 EQVERISPQG-----EVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS- 724 E+++ + L+ A+ NR L R V + G Sbjct: 639 SPEEQLAWDTSDWGTDEDGGRLDPPGQVSSAEINRYLFNKDTIRKVLKTVVENGIRVGGD 698 Query: 725 --QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFN 782 KT++F T HA+++ + A F P+ IT + Q+ + F Sbjct: 699 QLGKTIIFARTQRHAELIKQVFDATF----PEYSRTGASVITTHT----KYAQSALDDFA 750 Query: 783 K-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV-----NK 836 + NI ++VD+L TGVD+P + N+VF + V S + QM GR TRL P++ +K Sbjct: 751 DPDGDVNIAISVDMLDTGVDVPEVVNLVFFKPVYSPTKFWQMVGRGTRLRPDLFGPGMDK 810 Query: 837 TSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSH 896 T F IFD + RP+ + L + A Sbjct: 811 THFLIFDFCGNVDEFFKGEARESATGRPRSLSEKLFDARVGLLAQLDKHAKAPEMRAGLA 870 Query: 897 E---------------------QLVAKLQRIIGLATFNRDRSETIDKQVRR--LDELCQD 933 + +++ + + + +++E + + + L+ + + Sbjct: 871 DSLHASAASVPLGHIMVRPGDKEILVRYRERSAWNDVDEEKAEQLSRHLGHLPLNTMKEA 930 Query: 934 AAGVNFNGFASRL-------------------------------------------REKG 950 F+ +L R Sbjct: 931 ETAKRFDLVILKLQVGLLDHSPEFAALRQRVERMANDLMAVSSTIPMVAERRSFLERALD 990 Query: 951 PH-WSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLY-------GDYD 1002 P W+ L + L + + LDI DE+ + G Sbjct: 991 PEWWTNVTVEDLETIRIGMRSLIQFVPKGKRNAVTLDIQDEMGELTIDDEMPSQLPGTGS 1050 Query: 1003 TPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWK 1062 P + ++Q N ++ R L + + L+ + ++ Sbjct: 1051 YPSQLEQQLREVLQEHANDLAMIKL--RSARTLNAEDVAALEAVVAQVGRGSGGFTESID 1108 Query: 1063 ETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALK 1122 + R + IRR D E V + +++ Q+ ++ L L Sbjct: 1109 KLRERMGGDSIPAFIRRLVGLD-----EAAVREQFADLLSNTSFNAAQIRFIKMLVDVLV 1163 Query: 1123 EKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLG 1159 + + F G + F + D ++ Sbjct: 1164 HNGGVAYEEIFQPPFDEEG---SVVDIFHNKTDVIVD 1197 >UniRef50_B7RYA9 Type III restriction enzyme, res subunit family n=2 Tax=Gammaproteobacteria RepID=B7RYA9_9GAMM Length = 1165 Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 244/1260 (19%), Positives = 433/1260 (34%), Gaps = 240/1260 (19%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP--PC 59 M NFE L+ + AE DDP + LIK+R F E + ++P P Sbjct: 7 MTSQNFEMLRPHWPDLANLGGHAEKYVFDDPQSALIKLRCFAEKLVGIIYREWSLPCYPN 66 Query: 60 ENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYY 119 + D L + VD I+ H +R+ GN+A HE + L+ LA W Sbjct: 67 DKFIDRLENNAFASVVDTAIIDKLHAIRKEGNKAAHEGKFGKGSSLWLLKESHILASWLL 126 Query: 120 RLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALN 179 + K + FV P+ E L ++ LK++L + Q AE+EA QQ Sbjct: 127 LSMKKGDKADLKPFVEPQPAEKLSAKKAEALKKRLTEHQARFDQAMAELEASQQAEQEAQ 186 Query: 180 GYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLN 239 A KQ + A + ++ K L Sbjct: 187 AEAAK------------------------------LKQQLDKATAAQHKQANEVAKNLLE 216 Query: 240 LSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 L+E ++R LID +L GW D + ++ + E V+ G+ G+ D Sbjct: 217 LNEAQTRRRLIDTELHSRGWDIDLVNGKDTEEVKFEVEVD--------GQPTRTGIGYCD 268 Query: 299 YVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 YVL+ KP+AVVEAKR + ++ Y+ + + Sbjct: 269 YVLYDDNGKPLAVVEAKRTRENAEKGRQQAKLYADALEKAHGQR---------------- 312 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 P + TNG + D + + L ++ + Sbjct: 313 -----------------PVIFYTNGH---------DIYIWDDAQKAT--PRKLYSFYGKD 344 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 L M+ +++ P +++ R YQ +++ V + + ++ LL ATGTGK Sbjct: 345 SLQYMVRQRATRKD--LTGTPIDTDIAGRMYQIESITRVCERFIANHRKALLVQATGTGK 402 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TR AIA+ R+I + KR+LFL DR+ L +QA A+ + G + K Sbjct: 403 TRVAIALTKRMIDAGWAKRVLFLCDRKELRKQAGKAYNEFLSEPLYIV------GKSKKA 456 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 + +++++T +++ +D I+ DE+HR Sbjct: 457 DRATAQLYISTYPGMMRIMED----FDPGYFDLIIADESHRSIY---------------- 496 Query: 598 DYVSAYRRILDHFDAVKIALTATP----ALHTVQIFG----EPVYRYTYRTAVIDGFLID 649 + + I ++DA+++ LTATP + T Q+FG P Y AV DG L+ Sbjct: 497 ---NVFGDIFKYYDALQLGLTATPVEMISRSTSQLFGCEYKMPTANYPLEQAVADGHLVP 553 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 T+ +EG+ +G + ++ DF A ++ + NR Sbjct: 554 FKVVSHT-TQFLREGI---QGHSLSDEQIAELEERGIDPNELDFNAASLDKAVYNKDTNR 609 Query: 710 AVCNELTNYLDPTGSQ----KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITG 765 A+ L K+++F HAD++ E + YP+ + I Sbjct: 610 AILRNLMECGQRLADGQTLGKSIIFARNIQHADLMAELF----AEMYPEYGGNFCRVIHS 665 Query: 766 DADKDARKVQTMITRFN----KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 + + +I F K+ I ++VD+L TG+D+P N+VF + V+S++ + Sbjct: 666 KF----ERAEELIDDFKATGGKDSEITIAISVDMLDTGIDVPEALNLVFAKPVKSKVKFW 721 Query: 822 QMKGRATRLCPE---------VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLV 872 QM GR TRL P +K+ F IFD + ++L Sbjct: 722 QMIGRGTRLRPNLYGPATDGSDDKSKFLIFDHWAN-----FEYFEMEPEEEEPRQSKSLS 776 Query: 873 NEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSE-----TIDKQVRRL 927 + +S EA R + + +V Q I L N + QV L Sbjct: 777 QNLFESRLVFAEEALKRGEMDAFGKMVVLIKQDIDSLDDKNIAIKDNWTLKQQLSQVDVL 836 Query: 928 DELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDI 987 + + F+ A ++ + +E L+ + + + + + Sbjct: 837 HQFAPVTKSLLFDQMAPLMQWRNIKGQSEALKFD------LDVVNAQYARMAEPELLEPV 890 Query: 988 DDEVVSVKSLYG-----DYDTPQDF----------LEAFDSLVQRS-------------- 1018 ++++ D + AFD Q+ Sbjct: 891 KEQILGKVRNLSMHLNQVRSKAADINQIQQDDFWQVAAFDDFEQQRQSLRGVIHLRDKGA 950 Query: 1019 ---------PNAQPALQAVINRPR---------DLTRKGLVE-----------LQEWFDR 1049 + + ++ R ++ R+ + + LQ+ Sbjct: 951 TPPPEPLMILDIKEDAGEYQSQERKTNIRTVDYEIYRQEVEKTLTPLFEKDPVLQKIRAG 1010 Query: 1050 QHFEESSLR--KAWKETRNEDIAARLIGHI---RRAAVGDALKP----FEERVDHALTRI 1100 + E+ L A T+N + L+ A V L+ + T Sbjct: 1011 EPVTETELAQLNAMVHTQNPRVDLNLLAEFFPESTAGVDQLLRTIVGLDASVIKQQFTEF 1070 Query: 1101 KGEN--DWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLL 1158 E+ ++ Q +L L + + + F + F D L+ Sbjct: 1071 VQEHHIKLNAIQQRFLGLLESEICRRGHMTITDLYEQPFKSL-HTDGIDGLFQDEQAHLI 1129 >UniRef50_B1VEN8 Type I restriction-modification system, restriction subunit n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VEN8_CORU7 Length = 1226 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 252/1300 (19%), Positives = 433/1300 (33%), Gaps = 228/1300 (17%) Query: 2 MNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCEN 61 SNF F+ V AE N +P T+ R E +H+ N+ + Sbjct: 6 PPPSNFGFVAQVWPALLNDCVQAERNALTNPITSCFYARRVLEKVVRHIWEFRNLGFAAD 65 Query: 62 QHD--LLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHN--DLNDAQMCLRLGFRLAVW 117 +++ V L H LR N AVH+ A + F + W Sbjct: 66 TSIFGRMQDERFTTIVPQAQLDKLHFLRINCNNAVHDSDVPITPQLAVRVVTHLFDVLTW 125 Query: 118 YYRLVTKDYDFPVPVFVLPERGENLYHQ------EVLTLKQQLEQQVREKAQTQAEVEAQ 171 + + + +N + ++ L QL+ + E + T + Sbjct: 126 ATARHSTNPQAQPRAPFNQQALKNHHPATQMGRAQLQKLNAQLQAKDEELSNTALLLSEA 185 Query: 172 QQKLVALNGYIAILEGKQQETEAQTQARLAALEAQL-----------AEKNAELAKQTEQ 220 +Q + A + +A+ + A EA+L AE++AE+ + + Sbjct: 186 EQARLEEAEKHAEERARFATRQAKVEEEHAETEAELAAAKEELARLAAERDAEIERLRAE 245 Query: 221 ERKAYHKEITDQAIKRTLN-LSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVN 278 R KE +SE E+R LID L AG+ K L + Sbjct: 246 LRDELAKEAGAGTAPALPPSISEAETRKDLIDPMLAAAGF-VQGKNLT----------IE 294 Query: 279 KAIAEWPTGKDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNG 337 + P G + G+ADYVL+ KP+AVVEAKR + + ++ Y+ C ++ Sbjct: 295 HPVQGMPVGAESPRGNGYADYVLWDDDGKPLAVVEAKRASGSLSEGAVQARLYADCLEHK 354 Query: 338 FLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWY 397 + P + TNG + Sbjct: 355 HGQR---------------------------------PIIFCTNGH----QISMVDDQTN 377 Query: 398 RDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVE 457 ++A+ + +L M+ ++ + ++ R YQ++ +R V Sbjct: 378 LPGSGAGYTARAVEGYPDAAQLRRMINRRHTRK--PLSQVVVDPDIAGRDYQQEMIRRVT 435 Query: 458 KAIVKG-QQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFED 516 +A ++ LL MATGTGKTR AIA L Q+ ++LFL DR +L +QA F D Sbjct: 436 EAFESQLKRRALLVMATGTGKTRVAIATAKLLRQANWVGKVLFLADRTALVDQAHDNFVD 495 Query: 517 TRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP---MPVARYDCIVV 573 + N + + PE + ++V+T Q+++ E +D I++ Sbjct: 496 LYPDSAPVNLLRE--------PEGTGGVYVSTYQTMMGLIDDDGEHPAAFRPFDFDLIII 547 Query: 574 DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF 629 DEAHR ++RILD+FDA + LTATP +T Q+F Sbjct: 548 DEAHRSIYHR-------------------FKRILDYFDAYVLGLTATPRAEVTHNTYQLF 588 Query: 630 G----EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG----- 680 P YT A+ D +L+ Q + + GV ++ E++ Sbjct: 589 DIEDKTPTGSYTLEQAIEDKYLVPPQVLAQ-DSLFLRSGVRYEDLDEEEQLLWDAAEWGT 647 Query: 681 EVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAH 736 + + L+ A+ N L R V L KT++F T H Sbjct: 648 DEDGNPLDPPDGVTAAEINSRLYNRDTIRGVLRTLVEQGIKVEGGDRLGKTIIFARTQRH 707 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKE-RLPNIVVTVDL 795 A+++ EEL F PQ + IT R + RF +I ++VD+ Sbjct: 708 AELINEELGRCF----PQQAGERAAVITHST----RYAAEELKRFKNPAGTLDIAISVDM 759 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC-----PEVNKTSFKIFDCVDIYST 850 L TGVD+P + N+VF + V S + QM GR TRL ++K F++FD Sbjct: 760 LDTGVDVPEVVNLVFFKPVYSATKFWQMMGRGTRLRRDLFGENLHKDKFRVFDFCGNVRF 819 Query: 851 LESVDTMRPVVVRPKVELQTLV----------------------NEITDSETYKITEADG 888 T P V R + + L + Sbjct: 820 FTEQLTEEPGVGRQQTLSERLFLSWATMVWLLGEEAGASVGAGDGGGAAGSGAGGGAGEL 879 Query: 889 RSFAEHSHEQLVAKLQ-------------------------RIIGLATFNRDRSETIDKQ 923 E E L+ +L R + E + + Sbjct: 880 DGPLEDYREGLITELHATVQAITPTNIQVRPTDRPVLERFSRRDPWEGLDEAGLEQLAEH 939 Query: 924 VRRL--DELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDA 981 V L L + + F+ +L+ ++L NL Sbjct: 940 VAHLPMKTLKEKESAKRFDLLILQLQLGLIRADGSWATNRLKVERIAQELIEVSENLPFV 999 Query: 982 PIFLDIDDEVVSVKSLYGDYDTPQDF----LEAFDSLVQRSPNAQPALQAVINRPRDLTR 1037 L + +V+ + G T + + V R L V + ++ Sbjct: 1000 ANALPTLESLVNSEWWKGATITELELVRRNIRDLVEFVPRGKRQVVVLD-VEDEFGEIAE 1058 Query: 1038 KGL---------------VELQEWFDRQH--FEESSLRKA----WKETRN-----EDIAA 1071 + EL+E + LR A + +N ++ Sbjct: 1059 VDIPLEHSAAEVNVSRVEAELREALAKHGDSLSMQKLRTARPLSNVDVQNLEHMVAEVGL 1118 Query: 1072 RLIGHIRRAAVGDALKPFEER--------VDHALTRIKGENDWSSEQLSWLDRLAQALKE 1123 + ++++ GD + F R + + + S++Q+ ++ + + L Sbjct: 1119 EGVDEVQKSLGGDTIPAFVRRLVGLDEAAMKAEFEDLLEGSTLSAQQIGFIRYVIKVLVA 1178 Query: 1124 KVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSD 1163 L +F+ G + F DN +L + Sbjct: 1179 NGGLTMQEAAGESFYPHG---RVVDLFRDNQAVVLELKNR 1215 >UniRef50_A6W081 Type III restriction protein res subunit n=3 Tax=Gammaproteobacteria RepID=A6W081_MARMS Length = 1133 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 228/1241 (18%), Positives = 432/1241 (34%), Gaps = 226/1241 (18%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP--P 58 M NFEFL+ N+ +A AE DP + L ++R F E K + +P P Sbjct: 6 FMKSQNFEFLRPENEALANLAGLAEAVLFIDPGSALTRLRAFAEELTKAIYKEERLPRLP 65 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 + ++R+ V ++ + LR GN+ H DL A M L + +LA + Sbjct: 66 ESTLNTMVRDTVFQNCVTKPLVHQLNYLRTQGNETAHGGEGDLRTALMALGIAHQLACYL 125 Query: 119 YRLVTKDYDFPVPVFVLPERGEN---LYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKL 175 +P FV + + K++L++Q + + ++E ++ K Sbjct: 126 AIKYYMKKKASIPAFVDIKDNRADAIALSGSINKYKEELDKQKKLNDELLEQIEKERTKN 185 Query: 176 VALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIK 235 + A + +++ E QAI Sbjct: 186 LKYLDAPAYPDQLKRQQE-------------------------------------SQAIA 208 Query: 236 RTLNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 +L +E ++R LID+ L +AGW N I + + Sbjct: 209 DSLQWNEAKTRELLIDSMLVQAGWNVSDPE-------------NVGIEVEVAFPNNPSGK 255 Query: 295 GFADYVLFV-GLKPIAVVEAKRNNIDVPAR-LNESYRYSKCFDNGFLRETLLEHYSPDEV 352 G+ DYVL+ KP+AVVEAKR++ ++ Y+ + F + Sbjct: 256 GYVDYVLWGSDGKPLAVVEAKRSSNSSDQAGREQARLYADSLEKQFGQR----------- 304 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 P + TNG E + N + + Sbjct: 305 ----------------------PVIFYTNGYET-----------FIWDDAQYNAPRIVYG 331 Query: 413 WHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMA 472 ++ + L ++ + NQ +NP ++ + R YQ +A+++V + +++ L+ A Sbjct: 332 FYSKDSLDYLIYQRQYRDNQLEQNNPNLN-IADRLYQINAIKSVAHTFQEQRRKALIIQA 390 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKG 532 TGTGKTR +IA+ ++ + KR+LFL DR+ L QA AF++ + Sbjct: 391 TGTGKTRVSIALADLMLNAGWAKRVLFLCDRKELRTQASEAFKNNLPSEPRCEIGET--- 447 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQ 592 +++ +I+V+T ++ R + V +D I+ DE+HR Sbjct: 448 ---NKIDENARIYVSTYPGMMNR----FAQLDVGFFDLIIADESHRSIY----------- 489 Query: 593 FRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFG----EPVYRYTYRTAVID 644 + YR I D+FDA+++ LTATP + +T +FG +P Y++ + A+ Sbjct: 490 --------NRYRDIFDYFDALQVGLTATPVKFISRNTFDMFGCETTDPTYQFGLKEAIEH 541 Query: 645 G--FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 +L+D + T ++G++ + ++ + ++ D ++ ++ D R + Sbjct: 542 EPPYLVDFKVK-DVTTEFLRDGIHYNDLTDDQKRQLEDDLGFDEAQNAS-YQGKDIGRKI 599 Query: 703 VIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 ++ + L NY + KT+VF HA+ L F K YPQ + Sbjct: 600 FSEKTDQEILENLMNYGIKDETNSLVGKTIVFANNQKHAEH----LEKLFCKLYPQYGNK 655 Query: 759 AIIKITGDADKDARKVQTMITRFNKER-LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 I V+++I F K I ++VD+L TG+D+P + N+VF + V+S Sbjct: 656 VCKVIHNKVS----HVESLIKEFKKGDNEFRIAISVDMLDTGIDVPEVVNLVFAKTVKSS 711 Query: 818 ILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLV 872 + + QM GR TRLC +KT F IFD + E + L Sbjct: 712 VKFWQMIGRGTRLCKNLFGKGKDKTEFLIFDHYGNFEFFEQ--EYKEPQDVGGKPLLQTC 769 Query: 873 NEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDEL-- 930 E + + + R + + E + A + + + R +D ++ Sbjct: 770 FEARVNLAIQALKYSHREGFDTAIELIKADIADLPRDSVAVRKELRQVDTLLQTDSLQKL 829 Query: 931 --------------------CQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEK 970 +D + + + S+ + I ++ Sbjct: 830 NATTQHLLSDTVAPLMAVRPLKDKHATQLDRLMAAVETSFIEQSSSFEDGRDTLIEQIST 889 Query: 971 LKTDINNLNDAP-IFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSL--------------- 1014 L +I + I +++ + + L + Sbjct: 890 LAVNIQAVRQKQAIIDEVNSAEFWQAPSITKLENARTQLRSIMKFRQSDTSGGYDPLKTR 949 Query: 1015 ---------VQRS----PNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAW 1061 V+ + + D LQ+ + E L+ Sbjct: 950 TQDGKVVTEVREHKLYNRDDVSVYRRRAKELLDNLVATNPILQKIKAHEAVSEDDLKNLT 1009 Query: 1062 KETRNEDIAARLIGHIR---------RAAVGDALKPFEERVDHALTRIKGEN-DWSSEQL 1111 L + + + E+V T + + +S+Q+ Sbjct: 1010 STILTTHPTVSLDALNEFYGRTADQLHITLQELVGLEPEKVSEHFTDFVHRHPNLTSQQV 1069 Query: 1112 SWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDD 1152 ++D L + +D F + F + Sbjct: 1070 RFMDLLKTYITNYGFIDIAKLYEAPFTSV-SPNGVDGVFKE 1109 >UniRef50_B8ECU5 Type III restriction protein res subunit n=5 Tax=Bacteria RepID=B8ECU5_SHEB2 Length = 1233 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 245/1294 (18%), Positives = 430/1294 (33%), Gaps = 275/1294 (21%) Query: 16 FTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLG----LLLNIPPCENQHDLLRELGK 71 A A +AE N DP R E + + L L+ + G Sbjct: 61 EILARAQSAEANIKSDPRIAGFYARNALELMVETVFDIDNRLKRPRHDATLMSLIHDQGF 120 Query: 72 IAFVDDNILSVFHKLRRIGNQAVHEYHNDL-NDAQMCLRLGFRLAVWYYRLVTKDYDFPV 130 + N+ + +IGN+AVH DA ++ + W+ R T Sbjct: 121 KDNLASNLFPKLKLIIKIGNEAVHGKSTPPQRDALQAVKELHHVLYWFMRTYTPTL--DK 178 Query: 131 PVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQ 190 F + E L Q++ + + + + Q+L ++ Sbjct: 179 TRFTIAPFDEALVPQKLAIDAGLVTKAISSIKRV--------QELEKQLAESDSIKRDDY 230 Query: 191 ETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESR-FLI 249 + + A L A L E+ A+ + + A + + +E E+R +LI Sbjct: 231 QQQLNENAALKAANQVLLEQIAKAKQSAD-------------AAQDNHDYNETETRDYLI 277 Query: 250 DAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVG-LKPI 308 DA L +AGW K R + P G DYVL+ + Sbjct: 278 DALLDEAGWPLKDKRDREY-----------PVTTMPISDANPLGNGAVDYVLWGDDGTAL 326 Query: 309 AVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSG 368 AVVEAKR + ++ Y+ C + Sbjct: 327 AVVEAKRTSRRPEDGQQQAKLYADCLERQCGVR--------------------------- 359 Query: 369 KQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQ 428 P + +NG E D + + ++ +EL M+ Sbjct: 360 ------PIIFYSNGYETYL------------WDDAFYPPRKVQGFYTKDELALMIKRRSD 401 Query: 429 KQNQWFADNPGMSELGL--------RYYQEDAVRAVEKAIV-KGQQEILLAMATGTGKTR 479 + + D +L R+YQ+ A+ + + + Q+++LL MATGTGKTR Sbjct: 402 RVAFFSDDKGKGKKLTAQISEEITNRHYQKAAITHILQHFELEHQRKVLLVMATGTGKTR 461 Query: 480 TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE 539 T I+++ L+++ K ILFL DR +L QA F + Sbjct: 462 TVISLVDLLVKNDWIKNILFLADRNALLSQAKKNFVKLLPRVSC-----SVLSSGQSKDS 516 Query: 540 DSTKIHVATVQSLVKRTLQ--SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 ++++ AT ++ + D P V +D I+VDEAHR Sbjct: 517 IDSRLYFATYPTMKNLLDRGADDRPFGVGHFDLIIVDEAHRSVY---------------- 560 Query: 598 DYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFLID 649 S YR+I D+FD + + LTATP T IF G P Y Y +A + +L+ Sbjct: 561 ---SKYRQIFDYFDGLLVGLTATPKDEVEKDTYGIFDLPKGMPTYAYEDASAYAEKYLVP 617 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 I + T+ + GV + E++ + + L D ++ ++ N+ L Sbjct: 618 PTK-ISVATKFLRNGVKYQELSDEEKLEWENKA---ELTDREEVLPSEVNKFLFNEDTAE 673 Query: 710 AVCNELTNYLDPTGS--------QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 + +L + + G KT++F N HA L F K YP+ Sbjct: 674 KMFAQLMSKDELGGIHVEGGDVIGKTIIFAANNDHAVF----LEKIFNKNYPKWAGKLAR 729 Query: 762 KITGDADKDARKVQTMITRF-----------NKERLPNIVVTVDLLTTGVDIPSICNIVF 810 IT Q++I F K I ++VD+L TG+D+P + N+VF Sbjct: 730 VITFK----ETYAQSLIDEFGGEENNCKDFDPKNPTCRIAISVDMLDTGIDVPEVVNLVF 785 Query: 811 LRKVRSRILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLESVDTMRPV----- 860 + VRS++ + QM GR TRLCP +KT+FKIFD + ++ PV Sbjct: 786 FKVVRSKVKFTQMVGRGTRLCPNLFGPGDDKTTFKIFDYCQNFEFFDANPEGLPVGITKP 845 Query: 861 ----VVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRI---------- 906 V +V+L TL+N +TY+ + + + L Sbjct: 846 VMQQVFEKRVQLSTLLNARLLDDTYRDKYPEDCELLRDLNNYQLDMLHHQVTGMNLDNFI 905 Query: 907 ----------------------------------IGLATFNRDRSETIDKQVRRLD---- 928 + ++ E ++ R D Sbjct: 906 VRPKRQKVEPFLERGFWDHIDDAKFTELESHVSALPTEADAFNQDEQVNNLSNRFDNLML 965 Query: 929 --ELCQDAAGVNFNGFASRLREKGPH-WSAEVFNKLPGFIARLEKLKTDINNLNDAPIFL 985 +L G+ R+ E + + + ++ ++ + L Sbjct: 966 TMQLALLEKGMVPELSRQRVMEIAQQLEAKSTIPAVQAQLQLIQDIQVHEFWQDIHVTTL 1025 Query: 986 DIDDEVVSVKSLYGDYDTPQ----------------------------DFLEAFDSLVQR 1017 + + + D D + + + + +Q Sbjct: 1026 EDIRKRLRNLMFALDKDKKEVVYTQFVDEVQGVHDVTAVYQNPTMDLAQYRKKIELYIQD 1085 Query: 1018 SPNAQPALQAVINRPRDLTRKGLVELQ-EWFDRQHFE--ESSLRKAWKETRNEDIAARLI 1074 + + N+P +T+ L L+ D E+ + +E +L+ Sbjct: 1086 HQDQLTIQKLKRNKP--ITQADLDVLEGLLLDASGMSDIEAYRHQILQEKPLGTFIRQLV 1143 Query: 1075 GHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKT 1134 G AA A + E +++EQ+++++++ L VLD Sbjct: 1144 GMDLNAA------------KEAFSSFLDEGIYNAEQINFVNQVIDYLVNNGVLDMSHIFE 1191 Query: 1135 GNFHRRGGKAMLQRTFDD----NLDTLLGKFSDY 1164 F G FD+ L ++ K + Sbjct: 1192 PPFTDYHG-ESAYGFFDEGKVVELFGVIRKVNAN 1224 >UniRef50_C4LDI1 Type III restriction protein res subunit n=4 Tax=Gammaproteobacteria RepID=C4LDI1_TOLAT Length = 1123 Score = 531 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 240/1219 (19%), Positives = 421/1219 (34%), Gaps = 217/1219 (17%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL--LNIPP 58 M NFE ++G N+ I AE DP + + ++R F E K + + L PP Sbjct: 1 MATSLNFELIRGHNEKLANIGMLAEQILYLDPGSAITRLRGFAEEVTKEIYEIDCLPKPP 60 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 N DLL+ + + + + H LR+ GN H L+ A L + +L + Sbjct: 61 TANFMDLLKNDAFVNITESRLRDLLHFLRKEGNDTAHGGDGSLDKAFAALGVAHQLGQYM 120 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 + + P + NL + ++LE+ + E Q ++ + + Sbjct: 121 AINYYGFFQSDLSALSYPPKPGNLNIAQ-----KELEKLLEENQAKQEQLSHELEMERKA 175 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL 238 + K Q + Q +L Sbjct: 176 RQHAEATAEKLQAARVR-----------------------------------SQQTANSL 200 Query: 239 NLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 E ++R LID QL AGW + + T G+A Sbjct: 201 AWDENQTRKMLIDTQLAAAGWDLSDPEQVGLEIE-------------VLHQPTTSGIGYA 247 Query: 298 DYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DYVL+ P+AV+EAKR+ + ++ Y++ F Sbjct: 248 DYVLWGDDGNPLAVIEAKRSRETMQKGREQARYYAEGLAKQFN----------------- 290 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 +P + TNG E IW N + + ++ Sbjct: 291 ---------------CPMPIVFYTNGYEI--------CIWD---TKQYNAYRQVFGFYSK 324 Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 + L+ + K+ NP S + R YQ +A+++V +++ L+ ATGTG Sbjct: 325 DSLMFLHYQHQHKEKNLEVLNPDPS-IAGRPYQIEAIKSVTNRFQNQRRQTLIVQATGTG 383 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK 536 KTR +IA++ L++++ KR+LFL DR+ L QA AF+ + Sbjct: 384 KTRVSIALVALLLKARWVKRVLFLCDRKELRRQADDAFKLHLASEPRCVVGES------N 437 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 + S +I VAT ++ R + V +D I+ DE+HR Sbjct: 438 RIDQSARIFVATYPGMMNR----FSQLDVGFFDLIIADESHRSIY--------------- 478 Query: 597 LDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDG--F 646 + YR I D+FDA+++ LTATP A +T +F G+P + + A+ + Sbjct: 479 ----NKYRDIFDYFDALQVGLTATPVKFIARNTFDLFGCENGDPTFNFDLAEAIAHEPRY 534 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 L + T ++G++ +R + ++ + ++ F+ + + + + Sbjct: 535 LNPFRVK-EFTTEFLRDGIHYKDLTPEQREQLEEDLGAEEAQNVH-FKGKEIGKKIFSAS 592 Query: 707 FNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 + + L + KT++F + HA+ L + F K YPQ Sbjct: 593 TDCQILENLMTNGIKDATQSLVGKTIIFAQSQEHAEH----LESMFVKLYPQYGTKVCKV 648 Query: 763 ITGDADKDARKVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 I D+ + I F P I ++VD+L TG+D+P + N+VF R V+S + + Sbjct: 649 IHNKVDRP----EARIDEFKSPDNPFRIAISVDMLDTGIDVPEVVNLVFARPVKSWVKFW 704 Query: 822 QMKGRATRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRP------------ 864 QM GR TRLC P +K F IFD + + T VV Sbjct: 705 QMIGRGTRLCENLFGPGKDKEEFLIFDHYGNFKYFDEEYTEAEVVASRSLLQTVFEARLT 764 Query: 865 ------KVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSE 918 K I + + A +LV LQ L++ Sbjct: 765 LADTAMKKTSVKAFELAVALLKADICDLPEDAIAVRRELRLVKLLQESDMLSSMEASTRH 824 Query: 919 TIDKQVRRL--DELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDIN 976 +++K + L +D F+ + L+ S+E+ N IA ++ L IN Sbjct: 825 SLEKIIAPLMGSRPLKDMDASLFDRLIAELQTAHLLASSELENLKAELIAAVQNLAVTIN 884 Query: 977 NLNDAPIFLDIDDEVVS-VKSLYGDYDTPQDFLEAFDSLVQRSP-------------NAQ 1022 ++ ++ + + L A +RS + Sbjct: 885 DVRLKADEMEAVQSYDYWANLSVARLEQTRLELRAIMKFKKRSVGPGYTTPATSTFDDGA 944 Query: 1023 PALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETR-NEDIAARLIGHIRRAA 1081 + ++ + L+E D + L+K +K ED L + Sbjct: 945 QINERIVTLNPNDAYVYRKRLKEILDAMLEKNPVLQKIYKNVPVTEDELTSLTSTVLTQY 1004 Query: 1082 VG---DALKPF-------------------EERVDHALTRIKGENDWSSEQLSWLDRLAQ 1119 G L F + VD T + + +Q +L++L Sbjct: 1005 PGVDPRVLNEFYGRSPQQLNITLCQLVGLDAKEVDKCFTDFLQKAQLTYQQTQYLNQLKI 1064 Query: 1120 ALKEKVVLDDDVFKTGNFH 1138 + + G F Sbjct: 1065 FIGRYGRIQLAELYEGPFK 1083 >UniRef50_A2TPW6 Type I restriction enzyme, R protein n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TPW6_9FLAO Length = 1168 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 234/1294 (18%), Positives = 428/1294 (33%), Gaps = 263/1294 (20%) Query: 4 KSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLG---LLLNIPPCE 60 SNF F++ V+ Y AE DP T+L RM E + L +P Sbjct: 2 SSNFSFIEAVDREIYDRCLTAERTAYTDPRTSLAHSRMALELAVYWIYNEDPNLTLPYRP 61 Query: 61 NQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYR 120 + + L++E G + ++N S +R +GN A+H D+ + + W Sbjct: 62 DLNLLMKERGFRSQFNNNFYSQIDSIRIVGNFAIHNRKVSEEDSLKIIDHLYYFLRWMAS 121 Query: 121 LVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNG 180 + + +F + ++ +E QQ+ Sbjct: 122 GYKEVPVAGLGIFEYDLIPKEGADA-----------------ISRKRIEEQQKMFYQEID 164 Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 I + E A+ L Q E +A K++ Q I++ Sbjct: 165 KIQDKINAKDEAFAEKVKENEILRLQYEELKKS---------QALTKKVATQEIEKVNPT 215 Query: 241 SEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 +E ++R ID LR+AGW D+ ++ + + P D G+ADY Sbjct: 216 TEADTRKFFIDVLLREAGWDIDAPNVKEFE-----------VRGMPLT-DNPSGLGYADY 263 Query: 300 VLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 VL+ KP+AVVEAK+ I N++ Y+ C + + + Sbjct: 264 VLWDDNGKPLAVVEAKKTLISATQGENQAELYADCLEEMYGQR----------------- 306 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 P Y TNG E ++ + ++ +E Sbjct: 307 ----------------PVIYYTNGFETYLLDDC-----------FYKSAREVFGFYTKKE 339 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKG----------QQEIL 468 L ++ + Q P + R YQ A+R+V + + L Sbjct: 340 LQTIIWRRENR--QDIRAMPIDMAITDRPYQMRAIRSVAEHWAGSDTRTGQLIGTNRRAL 397 Query: 469 LAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIF 528 L +ATGTGKTRTAI++ L+++ KRILFL DR SL +QA F + + T N Sbjct: 398 LVLATGTGKTRTAISLSKILLEANWAKRILFLADRISLVKQAKRNFVNLLPDHSTVN--- 454 Query: 529 DIKGLTDKFPEDSTKIHVATVQSLVKRTL----QSDEPMPVARYDCIVVDEAHRGYILDK 584 L + + + +I +T ++L+ + V +D I+VDEAHR Sbjct: 455 ----LIETKDDTNARIVFSTYKTLMGLIDSSRSEDGRFYGVGHFDLIIVDEAHRSIY--- 507 Query: 585 EQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFG----EPVYRY 636 + Y+ I ++FD + + LTATP +T +FG P Y Sbjct: 508 ----------------NKYQTIFEYFDGLFLGLTATPKGSIDHNTYDVFGLAKDNPTDAY 551 Query: 637 TYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQD-FEV 695 + AV FL + + ++G+ S+ + +++ + E + + + Sbjct: 552 DFDEAVAQKFLSPYKVH-DVPVKFLRKGIKYSELSEEDKLKFEDEFLEGRKASGDEHIQK 610 Query: 696 ADFNRGLVIPAFNRAVCNELTNYLDPTGSQ----KTLVFCVTNAHADMVVEELRAAFKKK 751 + + L + + KT++F T HA+ + + L ++ Sbjct: 611 TELGKWLFNKPTAIKALSYFLKHGIKVNGGDEIGKTIIFARTQKHAEFLRDVLLEMDRE- 669 Query: 752 YPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFL 811 Q + + IT K ++ K+ LP I ++VD++ TG+D P + N++F Sbjct: 670 --QFGNKYVKVITNQTPKAQTFIERFCED-KKDLLPQIAISVDMMDTGIDAPKVVNLIFY 726 Query: 812 RKVRSRILYEQMKGRATRLCPE-----VNKTSFKIFDC-------------------VDI 847 + V+S + QM GR +RL P+ +K F IFD + I Sbjct: 727 KPVKSYSKFWQMIGRGSRLSPDLFGPGEDKKEFLIFDLCQNFEFFEENPEGIESNVQIGI 786 Query: 848 YST-----LESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAK 902 L ++ K E T + D ++ D F + V Sbjct: 787 TEKVLRLKLHLAQYLKEPQFEEKPEYITYRTNLLDELFQEVVLLDKTRFDVRMKIKQVTD 846 Query: 903 LQRIIGLATFNRDRSETIDKQ----------------------------VRRLDELCQDA 934 + D + + Q ++RL+ + Sbjct: 847 YGDGKRALWDHLDNKDITEIQDILFPLVKPRKEETALAKFYDRLLYTLMIKRLENQDDSS 906 Query: 935 AGVNFNGFASRLREKGPHWSAEV-------------------------FNKLPGFIARLE 969 F+ R+ + N L L Sbjct: 907 FVAGFSNQIMRVSSLSRKLLKKTTIPAVKDRMEVIKLPLEKHFWLNPGINHLEHLRKGLR 966 Query: 970 KLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYD---------------TPQDFLEAFDSL 1014 L I+ + + + +DE+ K + + + + + Sbjct: 967 DLIKYIDKEDQPYVTTNFEDELDESKVIIREPKGFSTASAGNTGTNEPKYANNYYRLEEI 1026 Query: 1015 VQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLI 1074 ++ + + + +T+ L L+E +E+ + + L+ Sbjct: 1027 IRENKDHLVIRRIHN--GEQITKAELNSLEELLFSSVDKEALEKDLGHPINLVETILVLV 1084 Query: 1075 GHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKT 1134 G + +VD A + S+Q+ +LD + L K +D Sbjct: 1085 GLS------------QAKVDKAFADFINKYKLDSKQIRFLDTIKSFLTSKGKIDPAKLYE 1132 Query: 1135 GNFHRRGGKAMLQRTFD----DNLDTLLGKFSDY 1164 F + F D + ++G + Sbjct: 1133 SPFAGY-HPKAIDGVFSKTQTDRIFEIIGDINSG 1165 >UniRef50_A0KWT8 Type III restriction enzyme, res subunit n=7 Tax=Gammaproteobacteria RepID=A0KWT8_SHESA Length = 1138 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 238/1262 (18%), Positives = 441/1262 (34%), Gaps = 240/1262 (19%) Query: 1 MMNKSNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIP--P 58 M NFEFL+ AE DP + LIK+R + E + LN+P P Sbjct: 1 MKQSMNFEFLRKNWPELADFGAYAEEYAFSDPQSALIKLRSYSEYIVNFIYQKLNLPCLP 60 Query: 59 CENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWY 118 + H+ L + +L FH ++ +GN+A HE NDA ++ +L W+ Sbjct: 61 KASFHEKLVGEDFVQLASSAVLDKFHLIKTLGNKAAHENKGASNDALFAVKQSHQLGTWF 120 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 Y VP F+ + LK++LEQ Q AE+E Sbjct: 121 YCSYHNLQACTVPAFIE----LSEEFLTTSKLKKKLEQSDALYQQAMAELE--------- 167 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL 238 + RL + A K A K T Q + +L Sbjct: 168 ------------------RQRLVNEQMFAAAKQATAVKDTPVFEAFAT---NSQLLSSSL 206 Query: 239 NLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 N +E E+R LID +LR GW+ + + G + PT G+ Sbjct: 207 NFNEAETRKYLIDMELRDIGWEVSKDN-----KSTDQVGQEVEVKHQPT----NTGIGYV 257 Query: 298 DYVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DYVL+ P+AVVEAK+ + D ++ Y+ + + + Sbjct: 258 DYVLWDDDGLPLAVVEAKKTSKDARIGKKQAKDYADALEKHYGQR--------------- 302 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 P + TNG + I+ D + + ++ Sbjct: 303 ------------------PVIFYTNGHD----------IYIWD-DAQGYPPRKIYGFYSK 333 Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 L + L + + + D +E+ R YQ + + V + +++ L+ ATGTG Sbjct: 334 SSL-QHLVKFQRIEKKKLTDVAIDTEVAGRRYQLETISRVHETFELKRRKALVVQATGTG 392 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK 536 KTR +IA+ L+ ++ KRILFL DR+ L +QA AF G +DK Sbjct: 393 KTRVSIALAKSLMDAKWVKRILFLCDRKELRKQADKAFVQFLGVKPYVV------GKSDK 446 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 +D+ ++ +AT ++ E V +D I+ DE+HR Sbjct: 447 KYKDTARVFIATYPGMM----GIYEDFDVGYFDLIIADESHRSIYNVFGN---------- 492 Query: 597 LDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFG----EPVYRYTYRTAVIDGFLI 648 + +FD +++ LTATP + T +F EP Y A+ +G L+ Sbjct: 493 ---------LFKYFDCLQVGLTATPVEMVSRSTCNLFDCDYKEPTANYPLEKAIGEGHLV 543 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 + + + T+ +EG+ + + + + ++ +FE A+ + ++ N Sbjct: 544 PFEI-VTMTTKFMREGMNQRSLSDEQIAELEAQGED---PNEFEFESAEIDNAVLNKDTN 599 Query: 709 RAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT 764 R + L K+++F HA L+ F + YP+L I Sbjct: 600 RKILRNLMENGIKDKDNQLIGKSIIFARKINHA----RLLKELFDEMYPELSQGFCEVIH 655 Query: 765 GDADKDARKVQTMI----TRFNKERLPN---IVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 + + + + LP+ + ++VD+L TG+D+PS+ N+VF + V+S+ Sbjct: 656 SEEPRAEALIDQFKITEEEKAKDSSLPDPITLAISVDMLDTGIDVPSVVNLVFAKPVKSK 715 Query: 818 ILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLE-SVDTMRPVVVRPKVELQTL 871 + + QM GR TRLC + +KT F IFD + + E + + + P + + + Sbjct: 716 VKFWQMIGRGTRLCEDLFGKGKHKTRFLIFDHWNNFDYFEFNYEEVEPSNTKSLAQKRFE 775 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQ-----------------LVAKLQRIIGLATFNR 914 + S K E + S +Q +V +L + L F + Sbjct: 776 LRLQLASAALKKLELNAFSQTIKLLQQDINALNTRNINVRDHWAIVTQLSDVKVLEQFAK 835 Query: 915 DRSETIDKQVR----------------------------RLDELCQDAAGVNFNGFASRL 946 ++ Q+ L+ + RL Sbjct: 836 PTVALLESQIAPLMNWLVIKGQSKAFRWDCLIAQTQCELLLNREAIGELKLEVQSVLERL 895 Query: 947 REKGPHWSAE----------------VFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDE 990 + A+ F +L L ++ + P + Sbjct: 896 PKNTAQVQAKATEIKFLMDSNSWLNITFYQLEQHRLALREIMYLLEGDILPPNPGPKYID 955 Query: 991 VVSVKSLYGDYDTPQDF----LEAFDSLVQRSPNAQPALQAVINRPRD---LTRKGLVEL 1043 V S + + + VQ + VI + R +T + +L Sbjct: 956 VKEDNSHIEYKARAANIHTVDYQIYQQKVQEALQPIFDSNPVIQKIRKGQAVTVSEIAQL 1015 Query: 1044 QEWF--DRQHFEESSLRKAWKETRN--EDIAARLIGHIRRAAVGDALKPFEERVDHALTR 1099 + + +L+ + +T + + ++G + ++ + T Sbjct: 1016 NGIIHAKYANLDIETLKTFYPDTTEPLDKLLRSIVGMDTQY------------IEQSFTA 1063 Query: 1100 IKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLG 1159 + ++ + + +D L + + +++ + + +D++ +LL Sbjct: 1064 LLQKHRMPPQAMRVIDMLIGHIARSGGIKMADLDQAPYNK--IYEGILGSSEDDVFSLLR 1121 Query: 1160 KF 1161 Sbjct: 1122 SL 1123 >UniRef50_A5KNP7 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KNP7_9FIRM Length = 1130 Score = 518 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 237/1241 (19%), Positives = 413/1241 (33%), Gaps = 247/1241 (19%) Query: 4 KSNFEFLKG--VNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLG----LLLNIP 57 + NF FL+ + AE P + + R E K + L I Sbjct: 2 EMNFAFLEKKQEYELFSGACIDAERILESSPVMSAVASRKALELCVKWIYSIDSALEPIG 61 Query: 58 PCENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLND-AQMCLRLGFRLAV 116 E LL G + +D + + R GN++VH D A + L + F Sbjct: 62 NREGLQSLLHNNGFPSLMDITLWRRLQHIVRNGNESVHTSKRLTRDNAVLSLNILFDFVE 121 Query: 117 WYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLV 176 W +DY VF + + + + Q+ +QV + Q A Sbjct: 122 WVDYCYGRDY--VERVFDEKKIPDATTD---MNVVQEEYRQVIKDVQKNA---------- 166 Query: 177 ALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKR 236 + E + + + LA + E + A+ + Y Sbjct: 167 ---------DKIVNEKDKEIERLLALNKELRNEMKVQKARNIKNREYVYEP--------- 208 Query: 237 TLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGNQ 294 +LSE +R IDA L G+ D + N E+P G + Sbjct: 209 --DLSEWTTRKRYIDADLEANGYVFDQ-----------DKKRNCVEVEYPVVGMPNQTGR 255 Query: 295 GFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 G+ DYV++ K IAVVEAK+ + N+ Y+ C N + Sbjct: 256 GYVDYVIWGDTGKIIAVVEAKKASESGDKGRNQGKLYADCIQNMQGKR------------ 303 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEW 413 P + TNG E D + + + Sbjct: 304 ---------------------PIIFYTNGFETYL------------WDDANSAPRLVSGI 330 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 +++ M+ K++ ++ R+YQ AV + KG ++ LL MAT Sbjct: 331 FPQKDINAMIERRCIKKS--VNSIQIDKQITDRWYQLRAVTKCCENYEKGIRKCLLVMAT 388 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGL 533 GTGKTRTA +++ + +S+ ++LFL DR+ L +QA AF N N L Sbjct: 389 GTGKTRTAASIVDVMTRSELMGKVLFLADRKELVKQAKDAFYKYIENTTMCN-------L 441 Query: 534 TDKFPEDSTKIHVATVQSLVKRTL-----QSDEPMPVARYDCIVVDEAHRGYILDKEQTE 588 E + KI +T Q+++ + IV+DEAHR Sbjct: 442 LLNKDERNAKIIFSTYQTMLHAIDTIKNADGSRFFSPGHFSLIVIDEAHRSIF------- 494 Query: 589 GELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH----TVQIFGE----PVYRYTYRT 640 + Y+ I +FDA + LTATP T F P Y Y Sbjct: 495 ------------NKYKAIFQYFDACLLGLTATPKNTIHQSTYTFFDMKNNIPTDVYEYEE 542 Query: 641 AVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNR 700 AV ++ I+ T+ + +G+ + ++ ER + + E + D + N+ Sbjct: 543 AVEKDHVLVPFYLIETSTQISDDGITYADLDEEEREAYEAEFVEDGGVPEH-IPPERINK 601 Query: 701 GLVIPAFNRAVCNELTN----YLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLE 756 + + ++L N + + KT++F HA +V+ YPQ + Sbjct: 602 YIFNVDTVDRMISDLMNNGIRHKNGNHVGKTIIFAQNKLHAKFIVDRFNEL----YPQYK 657 Query: 757 HDAIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVR 815 + + D + + F K + P I VTVD+L TG+D+P I N+VF +KV Sbjct: 658 GNFCKLVVCDEPYAGQN----LKDFKKADDYPFITVTVDMLETGIDVPEITNLVFAKKVY 713 Query: 816 SRILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLESVDTMRPV---------- 860 SRI +EQM GR TRLC +K F +FD + + + R Sbjct: 714 SRIKFEQMLGRGTRLCENLFGEGEDKKEFVVFDYMRNFQFFDEHPKGREAGEVVAPVAAR 773 Query: 861 -------------VVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII 907 V+ Q + + D + + V + + Sbjct: 774 FIRMVQMIKCLQDANYVDVKYQNIRENLIDHVVDDVKAMGTERVEVRLELRYVERYKERK 833 Query: 908 GLATFNR-DRSETIDKQVRRLDELCQDAAGVNFN--------------GFASRLREKGP- 951 + E ID + + +D A ++F+ RL+ Sbjct: 834 QYECLEEIHKEEIIDHLAKLVVSDEKDEAAISFDVLMYGLMLSVMTGGKNLGRLKRYVVG 893 Query: 952 -----------------------------HWSAEVFNKLPGFIARLEKLKTDINNLNDAP 982 +W + K L ++ I + Sbjct: 894 NANILLKECATIPDIKVRISELKELVSDHYWDVQDVLKFEETRKSLREIMKYIPAKKEKL 953 Query: 983 IFLDIDDEVVSVKSLYGDYDTP---QDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKG 1039 + + D VV + + +D+ + V+ + + N P ++ + Sbjct: 954 HYSNFKDIVVFREEGRLTSLSASDFEDYRAKVNEYVEAHKTTPAINKLLHNEP--ISVED 1011 Query: 1040 LVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTR 1099 EL+ F + +++T + ++ R AA A + Sbjct: 1012 YNELERIFTVELGTAEDYEMNYQDTPFGLLIRKIAKMDRTAA------------YAAFST 1059 Query: 1100 IKGENDWSSEQLSWLDRLAQALKEKVVLDDD-VFKTGNFHR 1139 E ++EQL +++++ + E +++ F R Sbjct: 1060 FILEERPNTEQLHFIEQVVDYVVENGYINNVLDLMKTPFDR 1100 >UniRef50_B3CDF9 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CDF9_9BACE Length = 1116 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 232/1263 (18%), Positives = 415/1263 (32%), Gaps = 269/1263 (21%) Query: 6 NFEFLKGVN--DFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLL--LNIPPCEN 61 NF+ +K ++ Y AE+ +P + + R+ E K + L I + Sbjct: 3 NFDIIKDIDGLRTIYRYCATAEDFQVANPMVSATQARLALETMVKTVYRLKGWQIGERAS 62 Query: 62 QHDLLRELGKIAFVD-DNILSVFHKLRRIGNQAVH--EYHNDLNDAQMCLRLGFRLAVWY 118 L + AF+D ++++ H +R+IGN A H + ++ + + + Sbjct: 63 LLSLTTDERFTAFIDSEDLMKRIHYVRKIGNNAAHASDGFVGRRESFFAVLNLYYII--- 119 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 G L +V+ ++++ ++ + + Q A Sbjct: 120 --------------------GSILLAWQVIDTLPDFDKELIPQSPQPSNLAVVPQTEQAS 159 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL 238 + + + + + A+ ++AQ Sbjct: 160 SATTQTADTAAKAVKESSDAQPTTVDAQ----------------------------PVVN 191 Query: 239 NLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 +LSE E+R L ID L +A W+ I G G+A Sbjct: 192 DLSEAETRKLYIDLLLHEADWKVSEHKGEIIP-------RQAGIEIEVQGMPNESGVGYA 244 Query: 298 DYVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DYVLF P+AVVEAKR ++D +++ Y+ C + Sbjct: 245 DYVLFDADGTPLAVVEAKRTSVDATVGRHQAELYADCLATRY------------------ 286 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 P Y TNG E + S+ + +H Sbjct: 287 --------------TCSRPVIYYTNGFETHL------------IDGIGYPSRKVMGFHTI 320 Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 +EL M+ + D ++ R YQ+ + +V K + LL MATGTG Sbjct: 321 DELRRMIAQ---RGRNDITDLQISDKITNRNYQKRVIESVCKHYNDKHRRALLVMATGTG 377 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK 536 KTR +I+++ L+++ K +LFL DR L QA N + L D Sbjct: 378 KTRVSISLVDVLVRNNWVKNVLFLADRIELVNQAKKNDTKLLPN-------MTVSSLRDS 430 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 + S +I +T Q+++ + + + R+D I++DEAHR Sbjct: 431 DVDISARILFSTYQTMIGHLDRDAKTFSLGRFDLIIIDEAHRSVFG-------------- 476 Query: 597 LDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDGFLI 648 Y I ++FD + + LTATP T +F GEP Y Y AV DG+L Sbjct: 477 -----KYGAIFEYFDCLLLGLTATPRDEVDRSTYDLFGMEQGEPTDSYEYDEAVADGYLN 531 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQD--------FEVADFNR 700 I+ ++ G+ + ER + + ++ + + + Sbjct: 532 PFRA-IKDNSKILTTGIDPEQLTPEERKQLEEIFEYEKMKAGLEPDDPYSRTINATEIFK 590 Query: 701 GLVIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLE 756 + V N L N KT++F + HA + E A YP L Sbjct: 591 YIFNQNTVDHVLNRLMNDGIRVKDNTLIGKTIIFAYNHKHAVFIAERFAAL----YPDLG 646 Query: 757 HDAIIKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVR 815 D I D + ++ +F + P I V+VD+L TG+D+P I N+VF + + Sbjct: 647 SDFCRVI----DNYEKYSSDLLDKFADVSKQPQIAVSVDMLDTGIDVPEIVNLVFFKPIH 702 Query: 816 SRILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQT 870 S+I + QM GR TRLC +K F IFD + E M P RP Sbjct: 703 SKIKFWQMIGRGTRLCENLFGEGQHKKEFLIFDFYRNFEYFE----MHPEGARPTKSQSI 758 Query: 871 LVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIG--LATFNRDRSETIDKQVRRLD 928 + K DG+ + + L I+ +A NR+R + Q+R ++ Sbjct: 759 VSLIFNLRTDIKFALQDGKYQSNEEAKAFHNDLADILHQQIAALNRNRIDVRL-QLRAVE 817 Query: 929 ELC----------------------------QDAAGVNFNGFASRLREKGPHWSAEVFNK 960 D + + + + + + + Sbjct: 818 TYANPEAMTCLTLGDAMAMKSNISPLLKNATTDTSALKLDALVLKSQLALVDETVNSTSS 877 Query: 961 LPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYD-TPQDFLEAFDSLV---- 1015 + LK ++ +D+ DEV+S + + + L+ Sbjct: 878 ERKIMDIAAYLKEKKASIPQVMAKMDVLDEVLSPHFWESKSLGSLERIRKELRELIQYLD 937 Query: 1016 ---------------------------------------QRSPNAQPALQAVINRPRDLT 1036 + + LQ + + L+ Sbjct: 938 GGTVGQTFTINVTDTFEEDNSGVNVTPIRTYRRRVEDYLKEHLSDDDTLQKIYH-LDPLS 996 Query: 1037 RKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHA 1096 + + L++ F + + +TR + + IR + E+ Sbjct: 997 EQDIARLEQIFWEELGSKEEFEA---QTRTKPYQHNVAAFIRSIIGVEQDIALEK----- 1048 Query: 1097 LTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDT 1156 + + + Q +L L + + E + V + F F D+ Sbjct: 1049 YRALIHGAELTRMQEEYLRTLIRYVCENGDIATVVLQQPPF------NKFTAIFRDSPKA 1102 Query: 1157 LLG 1159 L+ Sbjct: 1103 LID 1105 >UniRef50_Q0W4T5 Type I restriction modification system, restriction subunit n=2 Tax=cellular organisms RepID=Q0W4T5_UNCMA Length = 922 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 228/998 (22%), Positives = 401/998 (40%), Gaps = 159/998 (15%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E E+R ID L AGW+ G A+ E+ T + G ADY+ Sbjct: 9 PEREARKNIDRLLEAAGWKVQDH-----DKLDLGAGPGIAVREF------TLDNGEADYL 57 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LFV K + V+EAK + ++ +Y + Sbjct: 58 LFVDRKAVGVIEAKPEGTTLSGVAEQTQKYLNGIPKCIGQVK------------------ 99 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 PF Y + G E ++RD+RD S+++ +HRPE + Sbjct: 100 ------------NPPFAYESTGVET----------YFRDMRDPDARSRSIFAFHRPETIR 137 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 E L S+ + + P + GLR Q +A+ +EK+ + + L+ MATG+GKT T Sbjct: 138 EWL-SDEETLRSRLKNLPPLRTEGLRDCQTEAITKLEKSFAESRPRALIQMATGSGKTFT 196 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD--TFNSIFDIKGLTDKFP 538 +++ ++RLI+ K+ILFLVDR +LG Q L F+ D F +++++ LT Sbjct: 197 SVSFIYRLIKHAHAKKILFLVDRSNLGRQTLREFQQYTTPDDGRKFTDLYNVQHLTSNSI 256 Query: 539 EDSTKIHVATVQSLVKRTLQSDEP---------------------------MPVARYDCI 571 + +K+ + T+Q L E +P+ +D I Sbjct: 257 DPVSKVCITTIQRLYSMLRGEAEFEEGNEERSGFDTGVTDERPKEVAYNPNIPIEEFDFI 316 Query: 572 VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFG- 630 VVDE HR +R+ L +FDA + LTATP+ T+ F Sbjct: 317 VVDECHRSIYHV-------------------WRQALLYFDAFIVGLTATPSKQTIGFFNK 357 Query: 631 EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP-QGEVINDTLED 689 V Y + AV DG + + +I T ++G + GE V++ S + ++ L++ Sbjct: 358 NLVMEYNHERAVADGVNVGYEV-YRIKTEITEKGSKIEAGEYVDKRSKLTRQKRHEMLDE 416 Query: 690 DQDFEVADFNRGLVIPAFNRAVCNELTNYL------DPTGSQKTLVFCVTNAHADMVVEE 743 + ++ +R +V P R V + L KTLVF ++HA+ +V Sbjct: 417 ELVYDPNRLDRDVVAPDQIRTVIRTFRDRLFTEIFPGRKEVPKTLVFAKDDSHAEDIVNI 476 Query: 744 LRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIP 803 +R F ++ KIT K + ++ F P I VTVD+++TG DI Sbjct: 477 IREEFAA-----GNEFCKKITYRTT--GEKPEELLQSFRNSYYPRIAVTVDMISTGTDIK 529 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRL----------CPEVNKTSFKIFDCVDIYSTLES 853 + ++F+R VRS + +EQMKGR TR +KT F I D V + Sbjct: 530 PLECLIFMRNVRSGVYFEQMKGRGTRTISPTDLKAVSSDAHHKTHFVIVDAVGVCER--D 587 Query: 854 VDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFN 913 RP+ + V + L+ I + + T S ++ K ++ I + Sbjct: 588 KTDSRPLERKKSVAFKDLLYSIAVGKRDEDTITSLISRLTRLDREIGEKERKEIENVSGG 647 Query: 914 RDRSETIDKQVRRLDELCQDAAGVNF-------NGFASRLREKGPHWSAEVFNKLPGFIA 966 I+K V +D Q+A + +E + + F+K P Sbjct: 648 VQLKTIINKLVDAIDADSQEARAKQMFKTDSPTREQLEKAKEALTDEACKPFDK-PALRD 706 Query: 967 RLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQ 1026 L ++KT + D D ++S G + + + +F ++ + + ALQ Sbjct: 707 TLVEVKTRSEQIIDEGSI----DNLISAGFDDGAKEKARAVVTSFKEFIEANKDELTALQ 762 Query: 1027 AVINRP---RDLTRKGLVELQEWFDRQ--HFEESSLRKAWKETRN--------EDIAARL 1073 + ++P R L K + +L E + + + +A++ + + + Sbjct: 763 IIYSQPYAKRHLAFKDIKDLAEAIQKPPRNLTPERVWQAYEILERSKVKGAGAQKLLTNI 822 Query: 1074 IGHIR-RAAVGDALKPFEERVDHALTRIKGEND-----WSSEQLSWLDRLAQALKEKVVL 1127 I +R D L+PF E VD + E + +++EQ+ WL+ + + + + + Sbjct: 823 ISLVRFTEGQSDVLEPFPETVDSRFRKWVEEQEKLGRKFTAEQMEWLNMIKEHIGASLEI 882 Query: 1128 DDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 + + F ++GG R F L+ +L + ++ + Sbjct: 883 SVEDLELTPFDQKGGPVRAYRVFGSELNWMLEELNEVL 920 >UniRef50_A7I737 Type III restriction enzyme, res subunit n=5 Tax=cellular organisms RepID=A7I737_METB6 Length = 893 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 263/982 (26%), Positives = 416/982 (42%), Gaps = 148/982 (15%) Query: 239 NLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 E +R ID QLR AGW + G A+ E+PT G A Sbjct: 3 EEPEVVTRKKRIDPQLRAAGWTIAP----YQAGMDLSRYSRYALEEFPTT------NGPA 52 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY L + K +AV+EAK+ + L ++ RY++ Sbjct: 53 DYALCLDGKIVAVIEAKKLTLGPQNVLTQAERYAQGISGSPFNY---------------- 96 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 F++PF YSTNG IWY D+R++ N S + +H P+ Sbjct: 97 ------------SGFRVPFIYSTNG----------EIIWYHDLRNSLNRSSTVSHFHTPD 134 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 L E L + + Q + + + R YQ +A A+E+AI ++++L+AMATGTGK Sbjct: 135 ALAERLKDKFESSCQHLFEWENVHPMI-RPYQAEANAAIEQAIRDRKRQMLVAMATGTGK 193 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD-TFNSIFDIKGLTDK 536 T T + FRL++S KRILFLVDRR+L QA+ AF F+ +++ Sbjct: 194 TYTMVNETFRLMESGVAKRILFLVDRRALAAQAVKAFASFEARPGLKFDKSYEVYSQRFF 253 Query: 537 F----------------------PEDSTKIHVATVQSLVKRTLQSDEPMPVAR------- 567 ++V T+Q + + + Sbjct: 254 REDFEEEEKFDPKVLPSNYLLEPKPGLAFVYVCTIQRMTINLFGRNAVFGSSDEPIDEDA 313 Query: 568 ---------YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALT 618 +D I+ DE HRGY ++ +R+ LDHFDA+KI LT Sbjct: 314 EQMDIPIHAFDLIIADECHRGYTAAEQSV---------------WRKTLDHFDAIKIGLT 358 Query: 619 ATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 ATPA HT+ F E VY+Y Y AV +GFL+D D + + + G++L GEQV I Sbjct: 359 ATPAAHTMAYFREIVYKYDYARAVREGFLVDYDA-VALDSNVRMNGIFLQAGEQVGVIDA 417 Query: 679 -QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-----KTLVFCV 732 G D +ED++ F+ + R + P NR + +E+ Y + + K L+F V Sbjct: 418 SSGAQSFDNMEDERQFDTTEVERSITSPDSNRKILSEIRKYAEEHEQRFGRFPKILIFAV 477 Query: 733 TN----AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPN 788 + +HAD +V+ R F K + KITG D+ + I F +P Sbjct: 478 NDLSHTSHADQLVDIARDVFGK-----GDSFVQKITGKVDRPLQH----IREFRNRPMPA 528 Query: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE-VNKTSFKIFDCVDI 847 +VVTVD+L+TGVDIP + IVFLR V+SRIL+EQM GR TR +K+ F +FDC Sbjct: 529 VVVTVDMLSTGVDIPDLEFIVFLRPVKSRILFEQMLGRGTRRGERCPDKSHFVVFDCFGG 588 Query: 848 YSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII 907 P+ E +++V I D + + + R + ++ + + Sbjct: 589 TLLDYFRQATGITAEPPEKETRSIVQVIKDVWDNRDRDYNIRVLVRR-----LQRIDKEM 643 Query: 908 GLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIAR 967 + + ++R A G +F G + LR ++ P Sbjct: 644 SGHARDLFAAYVPLGDLKRYASDLTHALGQDFTGTMTLLRNP---ACQDLLLHYPRP--- 697 Query: 968 LEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 L N++ I D G P+D+L AF + V+ +P A++ Sbjct: 698 ERSLLVAYENVDTVSSRYLIRD-------SAGHEYKPEDYLTAFSTFVKENPEHIEAIRI 750 Query: 1028 VINRPRDLTRKGLVELQEWFD--RQHFEESSLRKAWKETRNEDIAARLIGHIRRAAV-GD 1084 +++RP+D L EL++ R F +L+ A K N+ + +I ++ AA + Sbjct: 751 LLDRPKDWGTDALSELKQKLAATRYRFTVENLQMAHKVRYNKALV-DIISMVKHAAREEE 809 Query: 1085 ALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKT-GNFHRRGGK 1143 L E+R+ ++ + EQ WLD++ + L + + D F + F GG Sbjct: 810 PLCTAEQRIHRVFDKMSLATSLTPEQQQWLDKIREHLIANLSISKDDFDSIPIFANVGGW 869 Query: 1144 AMLQRTFDDNLDTLLGKFSDYI 1165 R FD L L+ ++++ I Sbjct: 870 GKANRVFDGQLPDLIRQWNEAI 891 >UniRef50_C6Q0A8 Type III restriction protein res subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q0A8_9CLOT Length = 1102 Score = 505 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 257/1196 (21%), Positives = 431/1196 (36%), Gaps = 215/1196 (17%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPC--ENQ 62 SNF FL + AE+ D N T++KMRMFGE + L I Q Sbjct: 2 SNFSFLNKKWTILAKLGTQAESYLNTDNNATMLKMRMFGEKIIDLMLAALRIETDRFATQ 61 Query: 63 HDLLRELGKIAFVDDNILSVFHKLRRIGNQAVHEYHNDLNDAQMCLRLGFRLAVWYYRLV 122 D ++ L + ++ I +F +RR GN+A H+ + + DA CL +++A W+Y V Sbjct: 62 DDKIKLL-RTTNINKAIPDLFDIVRRFGNKANHDGYENKKDALECLISMYKVAAWFYIRV 120 Query: 123 TKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYI 182 TKD F +P+ + K+ + Y Sbjct: 121 TKDDSIRPLTFKIPKATVP------------------------------KAKVYDIEAYA 150 Query: 183 AILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSE 242 E ++E + QA ++ A QTE+++K ++ ++ TL L+E Sbjct: 151 EEKEKIKEEHIKEVQA---------VKEEAPKLVQTEEDKK------IEKEVETTLELNE 195 Query: 243 EESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGNQGFADYV 300 E+R LID L AGW E P E G G+ADYV Sbjct: 196 AETRRKLIDIMLNDAGWNV--------------NNKESVKIELPLENHKEKGKTGYADYV 241 Query: 301 LFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 LF KP+AVVEAK+ ++D ++ Y+ + + + Sbjct: 242 LFDKKGKPLAVVEAKKTSVDAIVGRQQAVEYAGSIERLYGKR------------------ 283 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 P + TNG E D + + + ++ E+L Sbjct: 284 ---------------PIVFYTNGYEIYM------------WDDMHSEPRQVWGFYTLEDL 316 Query: 420 LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTR 479 E+ K + + R YQ + ++ V + GQ++ LL MATGTGKTR Sbjct: 317 EELF--FKHKYKKDLNKVNIDKNIAGRPYQIEGIKRVYERYQNGQRKALLVMATGTGKTR 374 Query: 480 TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALG---AFEDTRINGDTFNSIFDIKGLTDK 536 T IA+ L+++ KR+LFL DR L +QA +F+ + Sbjct: 375 TVIALTKGLMEASWAKRVLFLADRDELVKQAKEDKNSFKTFMPEQ------ISCRFTGKN 428 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ 596 ++ +T Q++V + V +D I+ DE+HR Sbjct: 429 SDNREATLYFSTYQTMVNYYRE----FSVGFFDLIICDESHRSVY--------------- 469 Query: 597 LDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDGFLI 648 YR IL++FD+ + LTATP +T +F G+P + ++ A + Sbjct: 470 ----KVYRDILEYFDSHIVGLTATPVNFIERNTFSLFSCEDGDPTFNFSVEDA--WNHVP 523 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 ++I K ++ Q + +++ + + + N Sbjct: 524 PYLIEPRVIDATTDFLRKGIKYNEMTEEQRQQVDEEGYDGQEINYDKKELEKKITNKDTN 583 Query: 709 RAVCNELTNYLDPTGS--QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD 766 R + L G KT++F HA L + F + YPQ + I + Sbjct: 584 RYILRTLMEQGIKVGDYIGKTIIFAKNKKHA----NLLDSLFNELYPQYKGKLTAVIYSE 639 Query: 767 ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 + +I F + P I ++VDLL TG+DIP I N+VF + V S++ + QM GR Sbjct: 640 I----KDKSVLIENFKDKDFPRIAISVDLLDTGIDIPEIVNLVFAKPVYSKVKFWQMIGR 695 Query: 827 ATRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETY 881 TR C +K F IFDC + E M P PK + +L ++ T Sbjct: 696 GTRRCDNLFGEGQDKKEFAIFDCYKNFEFFE----MHPKGYEPKPQKTSL--QVRFEITC 749 Query: 882 KITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNG 941 K+ E E AKL+ I + S I K ++++++ + N + Sbjct: 750 KLLEKYKAKRNLDICEAFAAKLKADIE---ELPEDSIEIKKNRKKIEQVKRKEYWNNLSE 806 Query: 942 -FASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD 1000 F +L+ + + K + I N ++ E+ Sbjct: 807 DFIKKLKLEIAILIQWIDCKDNSEAVAFDNSIYRILFYNITGDKEALNREINYTMEKLSK 866 Query: 1001 YDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKA 1060 + + LV+ +DL+ + L E++ + A Sbjct: 867 LKLNLNQFDGTRELVKSLLQPLG--------WQDLSYERLEEIRLSLREL----MKYKGA 914 Query: 1061 WKETRNEDIAARLIGHIRRAAVGDAL-----KPFEERVDHALT----------RIKGEND 1105 T + + G L +P+E+RV A+ +I+ Sbjct: 915 GSNTFVVLDIKDTGSITKEISAGSVLYGGNMEPYEKRVKLAIESKLNDQIVMYKIRKGEK 974 Query: 1106 WSSEQLSWLDRL--------AQALKEKVVLDDDVFKTGNFHRRG-GKAMLQRTFDD 1152 S E+L + + L K +D + + G + L R F+D Sbjct: 975 LSEEELKSVYSIFSESFVYSIDELSSKTDIDKEDVISIIRKFVGVDEGELNRRFED 1030 >UniRef50_A1BGJ2 Type III restriction enzyme, res subunit n=21 Tax=cellular organisms RepID=A1BGJ2_CHLPD Length = 931 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 239/1019 (23%), Positives = 411/1019 (40%), Gaps = 176/1019 (17%) Query: 232 QAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDET 291 Q E+ +R +ID QLR AGW K R + V+ IA T Sbjct: 2 QERYSLNQTPEQIARDVIDVQLRLAGWAVQEKN-------RIDWQVSSGIA---VRHYPT 51 Query: 292 GNQGFADYVLFVGLKPIAVVEAKRN--NIDVPARLNESYRYSKCFDNGFLRETLLEHYSP 349 + ADYVLFV +P+ V+EAK+ + +S+ Y++ Sbjct: 52 QDGLEADYVLFVDRRPVGVIEAKKEDEGHHLTVVEEQSFGYAE----------------- 94 Query: 350 DEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKA 409 +PF Y + G R + D RD + S+ Sbjct: 95 --------------SKLKHLNNDPLPFVYESTGTLTR----------FTDYRDPKPRSRP 130 Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILL 469 + +HRPE E LG E + D PG++ LR Q A+ +E + G+ L+ Sbjct: 131 VFTFHRPETFREWLGQERSL-RERLYDIPGLNPAALRECQTMAINNLESSFRDGRPRALI 189 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDT--FNSI 527 MATG+GKT AI ++RL++ KRILFLVD R+LGEQA F N D F + Sbjct: 190 QMATGSGKTFAAITFIYRLLKHADAKRILFLVDTRNLGEQAEQEFRAYTPNDDNRKFVEL 249 Query: 528 FDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD--------------------------E 561 ++++ L +++ + T+Q L + Sbjct: 250 YNVQRLQSSSIAGDSQVCITTIQRLYSILKGEELDASLEEQNPAEKSWQPKEPVPVAYNA 309 Query: 562 PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP 621 +P+ +D IV+DE HR + ++++LD+FDA I LTATP Sbjct: 310 KVPIEFFDFIVIDECHRSIY-------------------NLWKQVLDYFDAFLIGLTATP 350 Query: 622 ALHTVQIFGE-PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP-Q 679 T F E V Y++ AV DG + D I T + G + E +++ Sbjct: 351 DKRTFGFFNENIVSEYSHERAVADGVNVGYDV-YTIETEITRNGSRIRAREFIDKREKLS 409 Query: 680 GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTN-----YLDPTGSQKTLVFCVTN 734 + LEDD + + +R +V P+ R V + + T KTLVF T+ Sbjct: 410 RRKRWEQLEDDVVYTSSQLDRDVVNPSQIRNVIRAFRDALPVLFPGRTEVPKTLVFAKTD 469 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVD 794 +HAD +++ +R F + + KIT A+ D ++++ RF E P I VTVD Sbjct: 470 SHADDIIQIIREEFNE-----GNAFCNKITYKAEDD---PKSLLARFRNEYNPRIAVTVD 521 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN-----------KTSFKIFD 843 ++ TG D+ + ++F+R VRS +EQMKGR TR + KT F I D Sbjct: 522 MIATGTDVKPLECLLFMRDVRSSNYFEQMKGRGTRTLSFDDLKKVTPSVTSAKTHFVIID 581 Query: 844 CVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVA-- 901 V + +L+ RP+ +P L+ L+ +T + + +Q+ Sbjct: 582 AVGVTKSLK--TDSRPLERKPTASLKELLEAVTFGAQDEDLYTSLANRLARLDKQITEQE 639 Query: 902 ----------KLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNG----FASRLR 947 K + + ++I+++ R ++ G + +G F + + Sbjct: 640 RAAFIDKTGGKSINQVVRELLDSWDPDSINRKAREMNPEAVQEMGESPSGETTMFLEQAQ 699 Query: 948 EKGPHWSAEVFN-KLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQD 1006 + H + FN L FI + ++ I + + D+V + + + Sbjct: 700 QALLHEARLTFNGSLNEFIDTVRRVHEQIIDTVNL-------DQVTRSEWAAESGEKAAE 752 Query: 1007 FLEAFDSLVQRSPNAQPALQAVINRP---RDLTRKGLVELQEWF--DRQHFEESSLRKAW 1061 + F + ++ + AL N+P R+LT + + E+ + DR + A+ Sbjct: 753 LIGEFKAYLEAHKDEITALGIFYNQPYRRRELTFRMIREVLDRLKADRPMLAPMRIWHAY 812 Query: 1062 KET--------RNEDIAARLIGHIRRAAVGDA-LKPFEERVDHALTRIK------GENDW 1106 ++ +NE IA L+ IRR D L ++ VD + + + Sbjct: 813 EQIEKVNGSSPKNELIA--LVALIRRVTGIDPVLTVYDRTVDANFKQWVFSRHSDAGDKF 870 Query: 1107 SSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 + EQ++WL + + + + ++ D F GG+ + + F D +D ++ + ++ + Sbjct: 871 TEEQMNWLRMIKEHIASSIHMEQDDLDLTPFDAYGGRGRMWQLFGDRMDGIIDELNEAL 929 >UniRef50_B5YGZ8 Type I site-specific deoxyribonuclease n=6 Tax=Bacteria RepID=B5YGZ8_THEYD Length = 916 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 214/997 (21%), Positives = 393/997 (39%), Gaps = 157/997 (15%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E+++R ID L KAGW + + A+ E+P ++G ADY+ Sbjct: 3 PEQQARERIDNLLEKAGWVVQD-----YRRVNLSDSLGVAVREFPL------SEGIADYL 51 Query: 301 LFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYE 360 LFV P+ V+EAK + ++ +Y Sbjct: 52 LFVNRVPVGVIEAKPEGTTLSGVAEQTAKY-----------------------------I 82 Query: 361 TSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 + + +PF Y + G E +R+++D S+ + +H+P+ LL Sbjct: 83 LNPTNNLPIILETLPFAYESTGTETF----------FRNLKDPEPRSRRVFAFHQPKTLL 132 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 E +E P + GLR Q +A++ +EK++ + + L+ MA+G GKT T Sbjct: 133 EWF-NEKDTLRGRLKKMPPLYTQGLRECQIEAIKNLEKSLSEDRPRALIQMASGGGKTFT 191 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD--TFNSIFDIKGLTDKFP 538 A++ ++RLI+ +R+LFLVDR +LG Q F+ D F +++I+ LT Sbjct: 192 AVSFIYRLIKFANARRVLFLVDRSNLGRQTRNEFQQYITPDDGRKFTELYNIQHLTSNTI 251 Query: 539 EDSTKIHVATVQSLVKRTLQSDE--------------------------PMPVARYDCIV 572 + +++ + T+Q L E +P+ +D IV Sbjct: 252 DPVSRVCITTIQRLYSMLKGETEFSPELEEFSGFEYPSADEPKEISYNPQIPIETFDFIV 311 Query: 573 VDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFG-E 631 DE HR +R++L++FDA I LTATP+ T+ F Sbjct: 312 TDECHRSIYHI-------------------WRQVLEYFDAYIIGLTATPSKQTLGFFNQN 352 Query: 632 PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP-QGEVINDTLEDD 690 V Y++ AV DG + D +I T ++G + G V++ ++ + L++D Sbjct: 353 LVMEYSHERAVADGVNVGYDV-YRIKTEITEKGSKVEAGFYVDKRDKLTRQLRWEQLDED 411 Query: 691 QDFEVADFNRGLVIPAFNRAVCNELTNYL------DPTGSQKTLVFCVTNAHADMVVEEL 744 ++ + +R +V P R + L T KTL+F ++HA+ +V + Sbjct: 412 LEYTPSQLDRDIVAPDQIRTIIKTFKEKLFTELFPGRTEVPKTLIFAKDDSHAEDIVHIV 471 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPS 804 R F K +D KIT K + +I F P I VTVD+++TG DI Sbjct: 472 REEFGK-----GNDFCKKITYRTT--GEKPEDLIVSFRNSYNPRIAVTVDMISTGTDIRP 524 Query: 805 ICNIVFLRKVRSRILYEQMKGRATRLC----------PEVNKTSFKIFDCVDIYSTLESV 854 + ++F+R V+SR+ +EQMKGR TR+ ++KT F I D V + Sbjct: 525 LECLIFMRDVKSRVYFEQMKGRGTRVISPDDLQAVTPDALHKTHFIIVDAVGVCEN--DK 582 Query: 855 DTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNR 914 RP+ + + L++ + + T + + +L K +R I R Sbjct: 583 TDSRPLERKRSIPFDKLIHSVALGNRDEDTLSSLVARLSKLDRELNEKDRREIEALAGGR 642 Query: 915 DRSETIDKQVRRLDELCQDAAGVNF-------NGFASRLREKGPHWSAEVFNKLPGFIAR 967 E I++ + +D + N E + + F+ Sbjct: 643 KIKEIINRLIDAIDPDKKIEKAKEIFNTDNPSNEQIKNALENLVDEACKPFDN-----PD 697 Query: 968 LEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 L ++ I N+ I D V+ + + ++ F ++ + + A++ Sbjct: 698 LREILITIKKRNEQIIDTISKDRVILAGFDDSAKEKAKTIIDTFKRFIEENKDELIAIEL 757 Query: 1028 VINRP---RDLTRKGLVELQEWFDRQHF--EESSLRKAWKETRNEDI--------AARLI 1074 + +P R +T + + L + + + + KA+++ + +I Sbjct: 758 LYKKPYGRRHITYEEIKRLADAIQKPPYYLTTELVWKAYEQLERSKVKKAGPQRLLTDII 817 Query: 1075 GHIR-RAAVGDALKPFEERVDHALTRIK-----GENDWSSEQLSWLDRLAQALKEKVVLD 1128 +R + L+PF E V+ + ++ EQL WL + + ++ Sbjct: 818 SLLRFTLGSTEFLEPFPEIVEERFSDWLREQQRSGKTFTPEQLEWLTMIKDHIATSCSIE 877 Query: 1129 DDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 + F F+ +GG F D +L + ++ + Sbjct: 878 LEDFDYAPFYEKGGLMRFHYLFGTESDIILEELNEVL 914 >UniRef50_D1C5W5 Type III restriction protein res subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5W5_SPHTD Length = 947 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 229/1022 (22%), Positives = 383/1022 (37%), Gaps = 171/1022 (16%) Query: 238 LNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 + E +R IDA L KAGW + AR A+ E P G A Sbjct: 1 MPTPETRARADIDAALDKAGWAVQDRYAVNLAAAR-----GVAVREVPL----KPGHGVA 51 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY+LFV + V+EAKR + ++ +Y + Sbjct: 52 DYLLFVDGLAVGVIEAKRVGTTLTGVEPQTAKYGAGLPDYLDTLV--------------- 96 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 +PF Y + E R + + D S+ + +HRPE Sbjct: 97 --------------KPLPFLYQSTSIETR----------FTNGLDPEPRSRRVFSFHRPE 132 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYY-----------------------QEDAVR 454 L + P Q + +E RY QE AVR Sbjct: 133 TLAAWISGTPPAQAAVASPILRAAEDPARYQAVTTLRARLQKMPRLDPGRLWPAQEQAVR 192 Query: 455 AVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAF 514 +E+++ + L+ M G+GKT TAI ++RLI+ +RILFLVDR +LG QA F Sbjct: 193 NLERSLADDRPRALIQMTMGSGKTYTAITAIYRLIKYADAQRILFLVDRANLGTQAKKEF 252 Query: 515 EDTRINGD--TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE----------- 561 + D TF +++++ L + + ++ + T+Q L E Sbjct: 253 DAYVPPDDRRTFTQLYNVQHLKTNRIDPTARVVITTIQRLYSILKGEPELDPSLEEGSHF 312 Query: 562 -----------------PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYR 604 +P+ +D IV+DE HR + +R Sbjct: 313 DTASGLVPEPVPVVYNPDVPIETFDFIVIDECHRSIY-------------------NLWR 353 Query: 605 RILDHFDAVKIALTATPALHTVQIFG-EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQE 663 ++L++FDA I LTATP+ T F V Y+Y AV DG +D D +I TR + Sbjct: 354 QVLEYFDAYLIGLTATPSKQTFGFFNQNLVMEYSYPQAVADGVNVDHDI-YRIRTRITES 412 Query: 664 GVYLSKGEQVERISP-QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL--- 719 G + G VE+ + L++D ++ AD +R +V P R V + L Sbjct: 413 GSTIEAGMYVEKRDRLTRAARWEQLDEDLAYDAADLDRAVVAPDQIRTVIRTFRDRLFTE 472 Query: 720 ---DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQT 776 + KTL++ +AHA+ +V+ +R F K +D KIT + + Sbjct: 473 IFPGRSHVPKTLIYAKDDAHAEEIVQIVREEFGK-----GNDFCQKITYKTT--GVRPED 525 Query: 777 MITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN- 835 +I F P I VTVD++ TG DI I ++F+R V+SR +EQMKGR R+ E Sbjct: 526 LIQSFRISYNPRIAVTVDMIATGTDIKPIEIVMFMRAVKSRTFFEQMKGRGVRVIDETEF 585 Query: 836 ---------KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEA 886 KT F + DCV + + + P+ P V +TL+ + + + Sbjct: 586 KAVTPDAERKTRFVLIDCVGVTERM--LSDSPPLERAPTVSFETLLQRVAFGSLDRDLLS 643 Query: 887 DGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGF---A 943 S QL A + + + + LD Q A G Sbjct: 644 SLASRLARLDRQLGAPDKARLAECAGGHTLQDIARGIIDALDPDRQVEAARTMFGLPPGE 703 Query: 944 SRLREKGPHWSAEVFNKLPGFIAR---LEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD 1000 E+ + E+ + IA L + + + I + D ++ Sbjct: 704 DPTPEQLEQATRELLRQAAAPIATNPDLREQLVSLRRHYEQTIDVVSKDSLLEAGFDAQA 763 Query: 1001 YDTPQDFLEAFDSLVQRSPNAQPALQAVINRP--RDLTRKGLVELQEWFDRQ--HFEESS 1056 + ++ +F+ + + ALQ + +RP + L + L + + Sbjct: 764 RERARELTTSFEQFIIEHKDEITALQVLYSRPYGQRLRFADIKALADAIQAPPRQWTTDR 823 Query: 1057 LRKAWKETRNEDI-------AARLIGHIRRAA-VGDALKPFEERVDHALTRIKGE----- 1103 L +A++ + ++ +R A + L PFEE+V+ + Sbjct: 824 LWQAYETLDKSRVRGSGMRRLTDVVSLVRFALHQEEELIPFEEQVEARFDAWLAQQAALG 883 Query: 1104 NDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSD 1163 +++ EQ WL+ + + ++ D F F + GG + F + TLL + ++ Sbjct: 884 REFTEEQRRWLEWIRDHIVASYTIELDAFDYAPFAQHGGLGRFYQLFGSDWRTLLDELNE 943 Query: 1164 YI 1165 + Sbjct: 944 VL 945 >UniRef50_B8HN01 Type I site-specific deoxyribonuclease, HsdR family n=8 Tax=cellular organisms RepID=B8HN01_CYAP4 Length = 1053 Score = 465 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 145/1041 (13%), Positives = 317/1041 (30%), Gaps = 103/1041 (9%) Query: 155 EQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAEL 214 E Q+ + K + +Q + + RL + ++ Sbjct: 7 EDQIEAYNLELLDALGYSYKHGSTIEPEGAAPERQSFGDVLLKDRLNEVIGRINSHIP-- 64 Query: 215 AKQTEQERKAYHKEITDQAIKRTLNLSEEESRFL---IDAQLRKAGWQADSKTLRFSKGA 271 + R+ +E+ + A ++ +E R+L I + K G + + L Sbjct: 65 ----PEIRQQAQRELQNIASPDLISNNEAFHRYLTEGITVEYTKNG-EIKGEQLWLIDWD 119 Query: 272 RPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN---NIDVPARLNESY 328 P+ A+ ++ E + D +LF+ P+ V+E K ++ A N+ Sbjct: 120 NPDNNEFLAVNQFTVI--EDNHNRRPDIILFINGLPLVVIELKNAADAKANLQAAHNQLQ 177 Query: 329 RYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRAT 388 Y + + F LL S + + K+P NG Sbjct: 178 TYKREIPSLFTYNALLVISDGISARAGSLSAPYSRF---SQWKRKLP-----NGE----- 224 Query: 389 MKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFAD------NPGMSE 442 + DT + LL+++ + D + Sbjct: 225 --------IDNNPDTNELEILTQGMLNKATLLDLIRHFTVFEKVKIVDPNTEVVTLQTIK 276 Query: 443 LGLRYYQEDAV----RAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRIL 498 Y+Q AV +V A + ++ G+GK+ + + + +L+ + I+ Sbjct: 277 KLAAYHQYYAVNLAVESVIAATRSNYRGGVVWHTQGSGKSLSMVFLSGKLVLALDNPTIV 336 Query: 499 FLVDRRSLGEQALGAFEDTR-INGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 L DR L +Q F R + + + + S I TVQ Sbjct: 337 VLTDRNDLDDQLFDTFAGCRQLLRQDPQQADNRDAVRELLNVASGGIIFTTVQKFAPVEG 396 Query: 558 QSDEPMPVAR-YDCIVVDEAHRGYILDKEQTE-------GELQFRSQLDYVSAYRRILDH 609 ++ P R ++ DEAHR K + + +++ + R L Sbjct: 397 ETLYPKISDRTNIVVLADEAHRSQYGFKAKQVNIKDEQGNVVGKQTRYGFAKYIRDALP- 455 Query: 610 FDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGV 665 A + T TP +T Q+FG + Y AV DG + +++ + E Sbjct: 456 -KATFVGFTGTPVEQTDKNTPQVFGSYIDVYDIAQAVEDGATVPIYYESRLVKVDLDEHG 514 Query: 666 YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT--- 722 E E +S + + Q + + ++ + + Sbjct: 515 RELLDELDEDLSFEDLGSTQQAKARQ----TQLEAIVGSTQRLETIAQDIITHFEKRQTA 570 Query: 723 GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT-----------GDADKDA 771 K ++ ++ A + + + + + IK+ Sbjct: 571 NRGKGMIVTLSRQIAANLYDNIIKLRPGWHSDDLNSGKIKVVMTASASDAGNLVAHHTSK 630 Query: 772 RKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL 830 + Q + R + +V+ D+ TG D P + + + ++ L Q R R+ Sbjct: 631 KDRQVLAQRLKDPDNDLELVIVCDMWLTGFDAPCLHTMYIDKPMKGHNLM-QAIARINRV 689 Query: 831 CPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRS 890 K I D + + L++ + K +L + + +G Sbjct: 690 Y--FEKQGGLIVDYLGVAQELKNALSFYSQSG-GKGDLTVDQDVAIGLLLRTLEVVEGIM 746 Query: 891 FAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKG 950 + A + + + D Q++ A ++ A Sbjct: 747 AEFNYQPYFTASTGDKLNILKSATNYVA--DPQIKDRFLDAVTALSKSYALIAHHPEAIA 804 Query: 951 PHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVV----SVKSLYGDYDTPQD 1006 F + + +LE ++N + + D+ + + D Sbjct: 805 QAEKISFFQAIQASLRKLEPSDGSLSNADIETAIRQVVDQALVSDTVINIFDEAGIKSPD 864 Query: 1007 ---FLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVE--LQEWFDRQHFEESSLRKAW 1061 + F + V+ + A++ + RD + ++ + EES R Sbjct: 865 VSVISDEFLADVEGMEHKNLAVELLKRLLRDEVKAQRRTNLVRSRQLAEMLEESLRRYQN 924 Query: 1062 KETRNEDIAARLIGH------IRRAAVGDALKPFEERVDHALTRIKGENDW--SSEQLSW 1113 + ++ LI ++ L+P+E AL++ + + + Sbjct: 925 QVISVTEVIQELISLSKDVQAAKQRGEELGLEPYELAFYDALSQNQSAREVMGQDKLREL 984 Query: 1114 LDRLAQALKEKVVLDDDVFKT 1134 L +++ +D ++ ++ Sbjct: 985 AITLVVRIRKNATIDWNLKES 1005 >UniRef50_Q7VGA4 Putative uncharacterized protein n=1 Tax=Helicobacter hepaticus RepID=Q7VGA4_HELHP Length = 906 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 204/994 (20%), Positives = 385/994 (38%), Gaps = 156/994 (15%) Query: 238 LNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 ++ E+++R ID L AG++ + P N AI E+ A Sbjct: 1 MDKPEQKAREEIDKLLSLAGFELRDFKDYALGDSTPNAARNLAIKEFILKNGT-----RA 55 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY+LFV K V+EAK+ ++ + N++ Y+ + Sbjct: 56 DYILFVAGKACGVIEAKKISLSLSGAENQAKNYAYTLPAHIPSFQGM------------- 102 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 +PF Y +N E I++ D+R+ ++ + +H P+ Sbjct: 103 ----------------LPFVYVSNASE----------IYFTDLREPNPRARRIFAFHTPK 136 Query: 418 ELLEMLGSEPQKQN-QWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 ELLE L S+ ++ + LR Q++A+ +EK++ + +Q L+ MATG G Sbjct: 137 ELLEKLNSDSLRERIRHIPPLSSQDSKKLRDCQKEAIEGLEKSLKQNKQRALIQMATGAG 196 Query: 477 KTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDT--FNSIFDIKGLT 534 KT TA +RL+ + KRILFLVDR +LG+QA F++ + D F+ I+++ L Sbjct: 197 KTFTACNFAYRLLSIAKAKRILFLVDRNNLGKQAKKEFDNFSPSADKRHFSEIYNVVHLE 256 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDE-------------------------PMPVARYD 569 +K+ + T+Q L E + + +D Sbjct: 257 TNHILTESKVVITTIQRLYSILRGESEFDSANEEHSAFENEDKETKEVAYNPKIGIDTFD 316 Query: 570 CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIF 629 IV+DE HR +R++L++FDA I L+ATP+ HT+ F Sbjct: 317 FIVIDECHRSIYGL-------------------WRQVLEYFDAFLIGLSATPSKHTLGFF 357 Query: 630 -GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN---D 685 V +Y +++D + + +I TR +++G + + + + + Sbjct: 358 AQNVVAQYDLEKSILDKVNVGYEI-FRIKTRISEQGSIIEANAEFQIPFRDKDTRKIGYE 416 Query: 686 TLEDDQDFEVADFNRGLVIPAFNRAVCNELTNY--------LDPTGSQKTLVFCVTNAHA 737 +LE+D ++ AD +R ++ P+ R + N + + KTL+F + HA Sbjct: 417 SLEEDLEYSKADLDRSVLAPSQIRTILETYKNKVFDLLFPERERSYLPKTLIFAKDDNHA 476 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 + +V R F +++ KIT + + +I F + I VTVD++ Sbjct: 477 EEIVRLAREVFNA-----DNEFAQKITYNIGN--QNPHELINAFRHSKKFRIAVTVDMIA 529 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN----------KTSFKIFDCVDI 847 TG DI + ++F+R V+S Y QM GR R + KT F + D V + Sbjct: 530 TGTDIKPLEVLIFMRDVKSASYYAQMVGRGVRSIHNDDLRAVTPNADCKTRFYVIDAVGV 589 Query: 848 YSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII 907 + RP+ + ++ L+ ++ ++ +S + D +L L + Sbjct: 590 SES--QKIDSRPLERKKRLSLKEILQQVRESVAKGEYDKDALLSLASRLTRLELSLSKED 647 Query: 908 GLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIAR 967 + + ++++ + + + A ++ + F KL + Sbjct: 648 NASLQELNSNKSLCALAKEILAFADSLQALERAEVA---HNPLEIFTNDTFCKL--LLEL 702 Query: 968 LEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 +K K I+ ++ + D Q+ + F+ + + + AL Sbjct: 703 AKKSKIYIDEISQDSVLSAEFDT-----------QKAQNLIAQFNEFILQHKDEITALSI 751 Query: 1028 VIN---RPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDI-------AARLIGHI 1077 + + + R LT + + EL + + SL A+K + LI + Sbjct: 752 IYSQNYKNRHLTYEVIAELAHKLKQDSMDIPSLWNAYKLRDKGKVSKNPSKNLTNLISLV 811 Query: 1078 RRAAVGDA-LKPFEERVDHALTRI-----KGENDWSSEQLSWLDRLAQALKEKVVLDDDV 1131 R A D L+ F + K +S EQ ++L+ + + + + Sbjct: 812 RYALKMDTELQDFAIGANARYNLWRGRCKKKGIAFSPEQEAFLELIKEYIIANGCAEVKD 871 Query: 1132 FKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 GG + F +NL L+ + S + Sbjct: 872 I-QEICADLGGIYRAKAIFKENLGELVEELSLAL 904 >UniRef50_Q3ARI9 Type I site-specific deoxyribonuclease HsdR n=25 Tax=cellular organisms RepID=Q3ARI9_CHLCH Length = 1084 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 150/1099 (13%), Positives = 324/1099 (29%), Gaps = 143/1099 (13%) Query: 153 QLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNA 212 L + E + + + + A + G E L Q A K Sbjct: 3 HLTEHSIETFAIELLYKLGYEYIYAPDIAPDTSAGSVSEIRESFAQVLLLNRLQNAVKRI 62 Query: 213 ELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGAR 272 + + + +A KEI A L +E R L + D + R Sbjct: 63 NHSIPADAQAEAI-KEIQRIASPELLTNNETFHRLLTEGIPVSKRVDGDDRGDRVWLIDF 121 Query: 273 PEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR---NNIDVPARLNESYR 329 P N+ + E GN D +LFV P+ V+E K N + + + Sbjct: 122 KNPHNNEFVVANQFTIIENGNNKRPDVILFVNGIPLVVIELKNATYENTTMHSAFKQIDT 181 Query: 330 YSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATM 389 Y K + F + E ++G Sbjct: 182 YKKTIPSLFTYNGFIVISDGLEAKAGTI----------------------SSGFSRFMAW 219 Query: 390 KTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP------GMSEL 443 K+ G + + E L++++ + D + Sbjct: 220 KSADGKAEASHL-VSQLETLIQGMLNKETLIDLMRHFIVFEKSKKIDAKTGITTISTVKK 278 Query: 444 GLRYYQEDAVRAVEKAIVK---------------------------------GQQEILLA 470 Y+Q AV ++ ++ ++ ++ Sbjct: 279 LAAYHQYYAVNRAVESTLRASGYQLVKETPLSMVMESPESYGLRGVKKQPIGDKKGGVVW 338 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTR-INGDTFNSIFD 529 G+GK+ + + +++ + IL + DR L +Q F ++ + D Sbjct: 339 HTQGSGKSLSMVFYTGKIVLALDNPTILVITDRNDLDDQLFDTFAASKQLIRQEPVQAED 398 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 L + S + T+Q E + + ++ DEAHR K +T Sbjct: 399 RNQLKELLKVASGGVVFTTIQKFQPNEGNIYEKLSDRKNIVVIADEAHRTQYGFKAKTID 458 Query: 590 ELQFRSQ-------LDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTY 638 + + R L +A + T TP ++T +FG V Y Sbjct: 459 AKDEKGTIIGKKIVYGFAKYMRDALP--NATYLGFTGTPIENTDVNTPAVFGNYVDIYDI 516 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDT--LEDDQDFEVA 696 AV DG + ++ + E E + + + +V + + + Sbjct: 517 AQAVEDGATVRIYYESRLAKVSLSEEGKKLVAELDDELEEEEDVRAYSNTPQQKAKAKWT 576 Query: 697 DFNRGLVIPAFNRAVCNELTNYLDPTGS---QKTLVFCVTNAHADMVVEELRAAFKKKYP 753 + R + ++ + + K ++ ++ A + + + + + Sbjct: 577 QLEALVGSENRIRNIAKDIVAHFNQRQEVCNGKGMIVAMSRRIAADLYQAIINLKPEWHS 636 Query: 754 QLEHDAIIKIT-----------GDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVD 801 + + +IK+ + +T+ R + +V+ D+ TG D Sbjct: 637 EDLNKGVIKVVMTSASSDGPKISKHHTTKEQRRTLAERMKNPDDALQLVIVRDMWLTGFD 696 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVV 861 PS+ + + ++ L Q R R+ +K I D + I S L+ Sbjct: 697 APSMHTLYIDKPMKGHNLM-QAIARVNRVYN--DKPGGLIVDYLGIASDLKKALAFYSDA 753 Query: 862 ---VRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSE 918 P + + V + + G ++ + KL I+ + Sbjct: 754 GGKGDPTILQEQAVQLMLEKLEVVSQMYYGFAYETYFEADTSKKLSLILAAEEHILGLED 813 Query: 919 TIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNL 978 + + + L + A + A F + +A+ + + + Sbjct: 814 GKKRYINEVTALSKAFAIAIPHDQA-----MDVKDEVSFFQTVKARLAKFDGTGSGKTDE 868 Query: 979 NDAPIFLDIDDEVVSVKSLYGDYDTP-----------QDFLEAFDSLVQRSPNAQPALQA 1027 + D+ + + + +D +DFL + ++ + + Sbjct: 869 EIETTIRQVIDKALISEQVIDVFDAAGIKKPDISILSEDFLMELKGMEHKNVALEVLKKL 928 Query: 1028 VINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAA-----RLIGHIRR--- 1079 + + + +K LV+ + + D L + K+ N+ + A LI + Sbjct: 929 LNDEIKSRAKKNLVKSRTFLD-------MLENSIKKYHNKILTAAEVIDELIKLGKEIVE 981 Query: 1080 ---AAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLA----QALKEKVVLDDDVF 1132 A L FE A+ + Q L LA + +++ +D + Sbjct: 982 TDDEAKRMGLTDFEYAFYTAVANNDSAKEL--MQQDKLRELAIVLTETIRQNTSIDWTIK 1039 Query: 1133 KTGNFHRRGGKAMLQRTFD 1151 ++ + + R + Sbjct: 1040 ESVKAKLKVAVKRVLRKYG 1058 >UniRef50_B5GJX6 Type I site-specific deoxyribonuclease protein R n=1 Tax=Streptomyces sp. SPB74 RepID=B5GJX6_9ACTO Length = 1052 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 206/1150 (17%), Positives = 395/1150 (34%), Gaps = 228/1150 (19%) Query: 104 AQMCLRLGFRLAVWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQ 163 A+ C++ F W+ R +D P + + + L R Sbjct: 2 AETCVKELFHCLYWFARTCARDPAALPPA---------ALEFDTGIVPRPLSPHARAL-- 50 Query: 164 TQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERK 223 QAE++A++ + A ++ A+ RL L A Sbjct: 51 KQAELKAKEAEDETRFREQARQLAAERAQSAELTRRLEELRAG----------------- 93 Query: 224 AYHKEITDQAIKRTLNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIA 282 + +QA+ T + E+ +R D L++AGW + Sbjct: 94 IAAAKAANQAVGDTHDYDEKTTRDAFTDLLLKEAGWDLTTPGRD---------------T 138 Query: 283 EWPT--GKDETGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFL 339 E+P G +G+ DYVL+ +P+A+VEAKR D ++ Y+ + F Sbjct: 139 EYPIASGMPAKSGKGYVDYVLWGDDGRPLALVEAKRTRRDAREGQQQAKLYADALEARFN 198 Query: 340 RETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRD 399 R P + TNG E + D Sbjct: 199 RR---------------------------------PVIFCTNGYET----------YLWD 215 Query: 400 VRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKA 459 + + + ++LL + + + A ++ R YQ A++ V + Sbjct: 216 -DGLGYPPRQVRGFFTKDQLLWHIRQRAGRLS--LASTRIDRKIAGRPYQLRAIQRVGET 272 Query: 460 IVKGQQE-ILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTR 518 + + LL MATGTGKTRT +A++ +L+++ +R+LFL DR++L QA+ AF++ Sbjct: 273 FEQDRSRQALLVMATGTGKTRTTVALVDQLMKAGWARRVLFLADRQALVTQAMKAFKENL 332 Query: 519 INGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL----QSDEPMPVARYDCIVVD 574 N + + D + +++++T Q+++++ +D +V+D Sbjct: 333 PNTPVASLLDD--------KTATARVYLSTYQTMLRQIDVIDGDGRRRYGPGHFDLLVID 384 Query: 575 EAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIF- 629 EAHR + Y + +FD++ + LTATP +T ++F Sbjct: 385 EAHRSVY-------------------AKYGELFRYFDSLLLGLTATPKDEIDHNTYRLFA 425 Query: 630 ---GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDT 686 G P Y A +G+L+ +++ R + G+ + + E+ + + Sbjct: 426 LEDGVPTDSYGLDEAAGEGYLVLPKA-VKVPLRFMEHGIRYADLSEEEKAEWDAKEWTED 484 Query: 687 LEDDQDFEVADFNRGLVIPAFNRAVCNELTN--YLDPTGSQ--KTLVFCVTNAHADMVVE 742 E D N L + L + G + KT++F +AHA Sbjct: 485 GEIPDAVGRHDMNTYLFNEDTVDKMLQTLMTRGHRVEGGDRIGKTIIFAKNHAHA----R 540 Query: 743 ELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDI 802 + + YP+ IT + N R P+I ++VD+L TG+D+ Sbjct: 541 YIEERYNANYPRDGGHTARVITYKETYAHTLLDAFADPRNPPRAPDIAISVDMLDTGIDV 600 Query: 803 PSICNIVFLRKVRSRILYEQMKGRATRLCPEV----------NKTSFKIFDCVDIYSTLE 852 P + N+VF + V SR + QM GR TRL P + +K F +FD Sbjct: 601 PEVVNLVFAKPVFSRTKFWQMIGRGTRLRPGLYGPGPDNPAHDKQDFFVFDFCGNIDFFN 660 Query: 853 ---------SVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKL 903 T+ + +++L +++ + + T D L +L Sbjct: 661 SRLEHSEGRRATTLTEQLRHRQLDLIRCLDKRQQPDPARDTGLDAYRTEAEIRWTLARRL 720 Query: 904 QRIIGLATFNRDRSETIDKQVRRLDELC------QDAAGVNFNGFASRLREKGPH----- 952 R + + +++ R + +A G + + P Sbjct: 721 HRTVTGMNPDNVLVRPHRREIERFADFGGWHRVDDEADGALRDHLLGLPSDHHPASEETG 780 Query: 953 WSAEVFNKL------------PGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD 1000 A+ F+ L P F A K++ ++L + ++ ++++ G+ Sbjct: 781 EEAKHFDLLSYRLQLAGLEGRPEFAALRAKVQDLASDLLTKTSIPAVAEQAGLLEAVAGE 840 Query: 1001 YDT-------PQDFLEAFDSLVQ---RSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQ 1050 + AF L + + +++ LV + + D Q Sbjct: 841 EWWQDVTRPPLEGMRRAFRPLARLTDARTRRNVVYTDFTDELGEISETELVGMPQGTDEQ 900 Query: 1051 HFEESSL--------RKAWKETR-NEDIAARLIGHIRRAAVGDALKPFEE---------- 1091 F + + A ++ R NE + + + + + +A+ ++ Sbjct: 901 RFRRKARTYLLRHEDQPAVRKLRHNEQLTRADLDGLEQTFLAEAIASADDLDAVRAAGGL 960 Query: 1092 -------------RVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFH 1138 + A + D QL +L + + + VL F Sbjct: 961 GLFVRGLCGMDRKAAEKAFEGFRAGRDLGPRQLDFLTLITDTIARRGVLHLGDLYEDAFT 1020 Query: 1139 RR--GGKAML 1146 GG L Sbjct: 1021 DLAPGGPDDL 1030 >UniRef50_A4T8B3 Type III restriction enzyme, res subunit n=6 Tax=Mycobacterium RepID=A4T8B3_MYCGI Length = 907 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 205/994 (20%), Positives = 364/994 (36%), Gaps = 171/994 (17%) Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 E +R LID+QL +AGW K A+ + G DY+L Sbjct: 13 EARARKLIDSQLTQAGWVVQDKKDLNLFAAQGVAVREVVM---------KPGHGRVDYLL 63 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 +V + V+EAK + +S Y+ Sbjct: 64 YVDKAVVGVIEAKPVGTPLSGVEWQSAMYADGLP-------------------------A 98 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 + + + ++PF + +G E + + D ++ + RPE + Sbjct: 99 DVRIAAKTRDGRLPFVFEASGVETH----------FTNGFDPEPRARLIFNVPRPETMAR 148 Query: 422 MLGS-----EPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ-QEILLAMATGT 475 L + P + LR Q +A+ VE+++ + L+ MATG Sbjct: 149 HLREAETNPDSPTWRAKVRKLPALDTEALRPAQIEAINGVEQSLADQRYDRSLVQMATGA 208 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD--TFNSIFDIKGL 533 GKT TA+ +RL++ R+LFLVDR +L +Q LG F++ R D F ++++ L Sbjct: 209 GKTFTAVTQSYRLLKHGGVDRVLFLVDRNNLADQTLGEFQNYRTPDDGRRFTELYNVNKL 268 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSD-----------------------EPMPVARYDC 570 + STK+ ++T+Q + + + + +P +D Sbjct: 269 SSAGLLGSTKVTISTIQRVFRFIKAGEVSDTDDPDIDDYIPDAPVTVSYSDALPPETFDL 328 Query: 571 IVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIF- 629 ++VDEAHR +R +L++FDA + LTATP T F Sbjct: 329 VIVDEAHRSIYGV-------------------WRGVLEYFDAHVVGLTATPGKQTFAFFR 369 Query: 630 GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ-GEVINDTLE 688 V YTY +V DG +D D +I T+ + +G ++ G V ++ + E +TL+ Sbjct: 370 QNLVSDYTYPESVADGVNVDFDV-YRIRTKISDQGSHIEAGTIVPKVDRRTREQRLETLD 428 Query: 689 DDQDFEVADFNRGLVIPAFNRAVCNELTNYL------DPTGSQKTLVFCVTNAHADMVVE 742 DD D+ +R + R V + L + KTL+F + HA+ +V+ Sbjct: 429 DDLDYVPGQLDRAVTATDQIRTVLESFRDRLFTEIFPGRSTVPKTLIFAKDDNHAEEIVK 488 Query: 743 ELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDI 802 ++R F K +D KIT + AR + + F I VTVD++ TG D+ Sbjct: 489 QVREVFGK-----GNDFAAKITYN----ARNAKEQLKAFRTSPSLRIAVTVDMIATGTDV 539 Query: 803 PSICNIVFLRKVRSRILYEQMKGRATRLCPEVN----------KTSFKIFDCVDIYSTLE 852 + + F+R VRS +EQMKGR R P+ + KT F I D + + Sbjct: 540 KPLECVFFMRDVRSAQYFEQMKGRGARTVPDADFQAVTPDATSKTRFVIVDAIGVTEH-- 597 Query: 853 SVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATF 912 P+ + V L+ L+ + + E L ++L Sbjct: 598 -EFVEPPLNRQRSVPLKKLLEKAA-----------NLTITEDEAATLASRL--------- 636 Query: 913 NRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKG-----PHWSAEVFNKLPGFIAR 967 + + D + LDE+ + + P +R Sbjct: 637 AKLELDLTDAERVELDEVAGQPVRDVIRSLVDAVEPSTTTPEAIEAALVPIASNPELRSR 696 Query: 968 LEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 + +L+ + + D DE++ + + +E++ + + + ALQ Sbjct: 697 VLELRAAHDRIIDEVS----ADELIEAGGVVDTG-KARHIVESWTAYLDEHRDEITALQL 751 Query: 1028 -VINRPRDLTRKGLVELQEWFDR--QHFEESSLRKAWKETRNEDI-------AARLIGHI 1077 R + + L R ++ + A+ E + L+ + Sbjct: 752 GYEAGERRIDFAFIEGLATRIARPPHNWTPDVIWNAYAAIDGEKVHRSATHAVTDLVSLV 811 Query: 1078 RRA-AVGDALKPFEERVDHALTRIKGEND-----WSSEQLSWLDRLAQALKEKVVLDDDV 1131 R A V D L P+ +RV + + ++ + WLDR+ + + + Sbjct: 812 RYATGVDDELVPYGDRVREKYAAWLTQQEQAGVTFTDTERWWLDRMVSVIASSAGIRVED 871 Query: 1132 FKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 F RGG R D L+ + + + Sbjct: 872 LDDAPFIERGGTDGAIRDLGDRAAELIDELNAEL 905 >UniRef50_B9M295 Type III restriction protein res subunit n=2 Tax=Proteobacteria RepID=B9M295_GEOSF Length = 908 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 210/1016 (20%), Positives = 368/1016 (36%), Gaps = 191/1016 (18%) Query: 238 LNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 + +E ++R ID QL +AGW S+ + R K G GF Sbjct: 1 MTRNESQTRQEMIDQQLARAGWGVKSRAVVEEFLIRVAEDDPKWH----------GQHGF 50 Query: 297 ADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADY L KPIA+VEAKR D A ++ Y+ + F + Sbjct: 51 ADYALLGRDGKPIAIVEAKRTGRDALAGKRQAADYADQIKSQFSHD-------------- 96 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 PF + TNG+E W RD R + + ++ Sbjct: 97 -------------------PFIFLTNGKEIH--------FWDRD----RYPPRKIAGFYT 125 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 ++L + +K Q D + R YQ +A+R V + + +++ LL MATGT Sbjct: 126 RDDLERL--QHQRKYAQPLHDITISPTIAGRDYQNEAIRRVTEGVDAAKRKFLLVMATGT 183 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKTRT IA++ L++++R +R+LFL DRR L QA+ F+ N + Sbjct: 184 GKTRTTIALVDTLLRAKRVQRVLFLADRRELVRQAMAEFKSHLPNESLAR--------IE 235 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 +I AT S++ Q + V YD I+ DE+HR Sbjct: 236 GGETSGARIQFATYPSMM----QVYSRLSVGYYDLIIADESHRSIY-------------- 277 Query: 596 QLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDGFL 647 Y+ I DHFDA+++ LTATP +T +F G P Y Y+Y A+ D L Sbjct: 278 -----QRYKAIFDHFDAIQLGLTATPTDYIDHNTFALFDCGDGTPSYYYSYEQAIADNNL 332 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAF 707 + +++ + +G+ + Q D+ +FE +D + ++ A Sbjct: 333 V----NYRVLDAQTNFQLRGIQGDTLPEPLKQMARDQGVELDELNFEGSDIEKSIINQAT 388 Query: 708 NRAVCNELTNYLDPTGSQ---KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT 764 N A+ E + K+++F V++AHA + E + + Q + I Sbjct: 389 NDAMVREFMDKSRKDIRGLPHKSIIFAVSHAHAKRLYESFNRLYPELQRQGMAEMI---- 444 Query: 765 GDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMK 824 D + + F + +P + ++VD+L TGVDIP+I N+VF + V S++ + QM Sbjct: 445 ---DSHMERADATLDDFKFKSMPRVAISVDMLDTGVDIPAIQNLVFAKPVFSKVKFWQMI 501 Query: 825 GRATRLCPEVN----KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSET 880 GR TRL + K F I D ++ + + ++ + + Sbjct: 502 GRGTRLHADKATGEIKKDFLIIDHWKNFAYFKLKPDGEIDHPSEPLPVRLFRLRLEKWQL 561 Query: 881 YKITEADGRSFAEHSH-------EQLVAKLQRIIGLATFNRD----RSETIDKQVRRLDE 929 + D + + Q + L + +D + + Sbjct: 562 LHAQQQDTQPAIDELLTMLQSLPRQSINVRPHWDELDALAQQWPAPSQSMLDHFSKSIAP 621 Query: 930 LCQDAAGVNFNGFAS---------RLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLND 980 L + A + + A++ ++ I L D+ + + Sbjct: 622 LMRLAPLAGLDELQFCVWCERLTVAWLKGDDGEQAKIRERIQETITSLADNIPDVQRVAE 681 Query: 981 AP--------------------------------------IFLDIDDEVVSVKSLY---- 998 I +++ D + + Sbjct: 682 QRAWVCSIGFWQHLDMPRLISLQTTFAPLMRYRTSTPGQTIEINLPDSITQRSWIIYGPT 741 Query: 999 GDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHF--EESS 1056 G+ + + E ++LV R P L + + L+ + L + + ++ E + Sbjct: 742 GEGAFAESYREQVEALVHRLAEQLPELAKL-KQGEFLSDEELEGISQTLNQADLFVTEET 800 Query: 1057 LRKAWKETRNEDIAARLIGHIRRAAVGDA-LKPFEERVDHALTRIKGEND-WSSEQLSWL 1114 LRKA++ A L +R A L EER++ A E+ + QL++L Sbjct: 801 LRKAFETP-----TASLTDCLRHILCEGAHLPNREERINAAFEAFIAEHGYLRANQLNFL 855 Query: 1115 DRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWDELA 1170 + A+ + R G ++ F L + + DE+A Sbjct: 856 RAVKAAVLRHGRITRAALSEPPLSRVG---RVESLFPSQDIEELIDLTHQLLDEVA 908 >UniRef50_C1A4R0 Type I restriction-modification system restriction subunit n=5 Tax=Bacteria RepID=C1A4R0_GEMAT Length = 1049 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 158/1052 (15%), Positives = 318/1052 (30%), Gaps = 122/1052 (11%) Query: 154 LEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAE 213 + + E A + + + ++ + + L A L N Sbjct: 4 FSESIVEDAALEWLAGLGYEVRHGPDMAAGEPGAERSDPGYRDVVLEHRLRAALLRLNPL 63 Query: 214 LAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFL---IDAQLRKAGWQADSKTLRFSKG 270 L + ++++T ++ + R L ++ + R+ ++ Sbjct: 64 LQA---EAIDEAYRKLTRLDAPSAMDRNRAMHRMLLNGVEVEFRRPDGSIGGGQVQIFDF 120 Query: 271 ARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR---NNIDVPARLNES 327 P A+ ++ E + D V+FV P+AV+E K N + + + Sbjct: 121 DTPTNNNWLAVNQFSV--AEGQHHRRPDVVVFVNGLPLAVLELKNAADENATIWSAWQQL 178 Query: 328 YRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRA 387 Y F L + G+E+ Sbjct: 179 QTYQAQIPTLFTSNLALVISDGVQARIGALGA----------------------GKEWFK 216 Query: 388 TMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRY 447 +T SG + L L++L + D+ + + Y Sbjct: 217 PWRTVSGTTSAPS-SLSELEVLLHGVFEHRRFLDLLHYFVAFEQ---EDDGPLVKKLAGY 272 Query: 448 YQEDAVR-AVEKAIVK--------------------------GQQE-ILLAMATGTGKTR 479 +Q AV AVE+ + G + ++ G+GK+ Sbjct: 273 HQYHAVNVAVEETLRAARSVNPDRIAENIGRYSSGEQPGGEPGDRRVGVVWHTQGSGKSL 332 Query: 480 TAIAMMFRLIQSQR--FKRILFLVDRRSLGEQALGAFEDTR-INGDTFNSIFDIKGLTDK 536 T R+I ++ + DR L EQ G F R + D L + Sbjct: 333 TMAFYAGRVILHPGMANPTVVVITDRNDLDEQLFGTFARCRNLLRQEPVQAKDRADLRKQ 392 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVV-DEAHRGYILDKEQTEGELQFRS 595 + + T+Q + P R + IV+ DEAHR Sbjct: 393 LAVSAGGVIFTTIQKFMPDERGDKHPPLSDRRNVIVIADEAHRSQY------------EF 440 Query: 596 QLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQD 651 + R L +A + T TP +T Q+FGE + Y + AV+DG + Sbjct: 441 HDGFAGHMRDALP--NASFVGFTGTPIEKADANTRQVFGEYISVYDIQRAVVDGATVPIY 498 Query: 652 PPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAV 711 ++ E L E ++ EV + A + Sbjct: 499 YESRLAKLEFAESEKLGIDSAFEEVTEGEEVERKEQLKSK---WAQLEVIAGADTRLDLI 555 Query: 712 CNELTNYLDPTG---SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI--TGD 766 ++ ++ + K ++ ++ A + + A + + + ++KI TG Sbjct: 556 ARDIVDHFERRNEVLDGKAMIVVMSRRIAVALYNRIVALRPEWHSDRNDEGLLKIVMTGS 615 Query: 767 ADKD---------ARKVQTMITRFNKERL-PNIVVTVDLLTTGVDIPSICNIVFLRKVRS 816 A + + TRF +V+ D+ TG D PS+ + + +R Sbjct: 616 ASDPVDWQPHIRNKTDREALATRFRDGSSGFRLVIVRDMWLTGFDCPSLATMYVDKPMRG 675 Query: 817 RILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPV---VVRPKVELQTLVN 873 L Q R R+ +K + D + + L+S + ++ + V Sbjct: 676 HGLM-QAIARVNRVF--KDKPGGLVVDYLGLADALKSALATYTEAGGTGKTALDQEEAVA 732 Query: 874 EITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQD 933 + + + G + +L + + ++ +R + EL + Sbjct: 733 VMLEKHEICVGLFHGFDRSAWYVGTAQQRLSLLPAAQEHVLALPDGKERLMRHVSELTRA 792 Query: 934 AAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVS 993 A + A +R+ + A + R + + + DEV+ Sbjct: 793 FALAVPHDTAMHIRDDVGFFQAVRAVLAKNEVGRARPRSDVEHAIRQIVSKALVSDEVID 852 Query: 994 VKSLYGDYDTPQDFL-EAFDSLVQRSPNAQPALQAVINRPR-DLTRKGLVELQEWFDRQH 1051 V + G L + F + V+ P+ A++ + + ++ + + + Sbjct: 853 VFTAAGLKKPDISILSDEFLAEVRGMPHRNLAVELLQKLLKGEIRTRSRRNVVQARSFAG 912 Query: 1052 FEESSLRK-AWKETRNEDIAARLIGHIRRAAVGDA------LKPFEERVDHALT-RIKGE 1103 E +LR+ + I LI + +A L E AL Sbjct: 913 LLEQALRRYQNRAVETAQIIEELIKLAKDMRAANARGEALGLTDDELAFYDALEVNDSAV 972 Query: 1104 NDWSSEQLSWL-DRLAQALKEKVVLDDDVFKT 1134 EQL + L +++ V +D + Sbjct: 973 QVLGDEQLRVIARELVATIRKNVSIDWAIRDN 1004 >UniRef50_Q1IK45 Type I site-specific deoxyribonuclease, HsdR family n=3 Tax=Bacteria RepID=Q1IK45_ACIBL Length = 1029 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 146/1008 (14%), Positives = 301/1008 (29%), Gaps = 113/1008 (11%) Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 + ++ E + + L N L + + +T + + Sbjct: 35 AGEIAAERIEADYSDVILERRVRQTLQRLNPNLP---PEALDDAFRRLTHDNETSLIANN 91 Query: 242 EEESRFLI---DAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 + L+ + +A +R E A+ ++ E D Sbjct: 92 HAFHQILVNGVTVEYNRADGSIGGALVRVIDFEAAENNDWLAVNQF--TIVEGQYTRRPD 149 Query: 299 YVLFVGLKPIAVVEAKR---NNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ++F+ PIA++E K N + + Y + F LL E Sbjct: 150 VLIFINGLPIALLELKNAADENATIWTAFKQIQTYKSQIPSLFAYNELLVISDGMEARVG 209 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 T E +T G + + Sbjct: 210 S----------------------LTADTERFMPWRTIGGEELAPTSLP-QLQVLIEGLFE 246 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEK----AIVKGQQE--ILL 469 LL+ + +++ + + Y+Q AV + A +G ++ Sbjct: 247 RRRLLDFIRHFVVFEDEG---RGVLIKKIAGYHQFHAVNRALRETLSASAEGGDRRVGVV 303 Query: 470 AMATGTGKTRTAIAMMFRLIQSQ--RFKRILFLVDRRSLGEQALGAFEDT-RINGDTFNS 526 G+GK+ T RL+ + I+ + DR L +Q G F + Sbjct: 304 WHTQGSGKSLTMAFYAGRLVLEPTLQNPTIVVITDRNDLDDQLYGTFSRCHELLRQAPLQ 363 Query: 527 IFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQ 586 D + L S + T+Q + + R +V DEAHR Sbjct: 364 ALDREHLRSLVQVSSGGVIFTTIQKFMPAEGDKYPQLTDRRNVIVVADEAHRSQY----- 418 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAV 642 + R L H A I T TP ++T +FG+ + Y + AV Sbjct: 419 -------DFIDGFARHMRDALPH--ASFIGFTGTPIEKTDVNTRSVFGDYISIYDIQRAV 469 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 DG + ++ E + EV ++ + A + Sbjct: 470 EDGATVPIYYESRLAKLELPASEKPKVDTAFEEATEGEEVDR---KEKLRTKWAAVEAVV 526 Query: 703 VIPAFNRAVCNELTNYLDPTG---SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDA 759 V +L + + K ++ C++ + E+ + + + Sbjct: 527 GTEKRLNTVAKDLVKHFEERLEVMDGKAMIVCMSRRICVDLYNEIMKLRPTWHSENDDAG 586 Query: 760 IIKI--TGDAD---------KDARKVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICN 807 ++KI TG A +D R+ + + RF + P IV+ D+ TG D+PS+ Sbjct: 587 VLKIVMTGSATDGPEWQQHIRDKRRREALGKRFKNAKDPFKIVIVRDMWLTGFDVPSLHT 646 Query: 808 IVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVV---VRP 864 + + +R+ L Q R R+ +K + D + I L+ + Sbjct: 647 MYADKPMRAHGLM-QAIARVNRVF--KDKPGGLVVDYLGIAHELKLALATYTESGGKGQT 703 Query: 865 KVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQV 924 + + V + + G ++ KL + + + ++ + Sbjct: 704 ALPQEEAVARMIEKYEICRGLFHGFDWSMWLTGTSAQKLAILPNAQEHVLKQEDGKNRLL 763 Query: 925 RRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIF 984 + + +L + A + A ++R+ + + + L ++ + + +++N I Sbjct: 764 KAVSDLSKAFALAVPHDAALKIRD-DVGFFQAIRSVLAKTASQQYRPEQELDNAIRQIIS 822 Query: 985 LDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLV-EL 1043 + V P + + + ++ N P + R L + Sbjct: 823 RAMSSGEVVDIFAAAGLKKPDISILS-EEFLREVSN-IPQKNLAVELLRKLLNDEIKSRS 880 Query: 1044 QEWFDRQHFEESSLRKAWKETRNEDI-----AARLIGHIRRAAVGDA------LKPFEER 1092 + + + L + + +N I LIG + A L E Sbjct: 881 RRNVVKGKLFSAMLESSIHKYQNRAIQAAQVIEELIGLAKEMREESAKGEELGLSEDEVA 940 Query: 1093 VDHALT------RIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKT 1134 AL ++ GE + L ++ +D V + Sbjct: 941 FYDALEVNDSAVKVLGEPTLKTIARE----LVDTVRRNTTIDWAVREN 984 >UniRef50_C2G1E6 HsdR family type I site-specific deoxyribonuclease n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G1E6_9SPHI Length = 1047 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 148/985 (15%), Positives = 302/985 (30%), Gaps = 124/985 (12%) Query: 176 VALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIK 235 LNG +G E + L + + N + + +++ K++ Sbjct: 23 EYLNGVNISPDGDHPERQYNEVVLTTRLRDAIDKLNPTITQDAKED---ALKKVLRTDSP 79 Query: 236 RTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG 295 L +E R+L D + + + + N+ + E Sbjct: 80 NLLINNETFHRYLTDGVDVEIRTENGIRGEKVYIIDFENTENNEFLVVNQFTIIEGNQNK 139 Query: 296 FADYVLFVGLKPIAVVEAKR---NNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEV 352 D +LFV P+ V+E K N + + N+ Y + + F L + Sbjct: 140 RPDLILFVNGMPLVVIELKNAVDENATIKSAYNQLQTYKQAVPSLFTYNELSIISDGWDA 199 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 T+ + KTK G + M Sbjct: 200 RCGT----------------------LTSDFGRFMSWKTKDGKTEATHLEM-QMQVMFNG 236 Query: 413 WHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVK------GQQE 466 + LL+++G + + Y+Q AV ++ V+ ++ Sbjct: 237 MLNKQTLLDLIGQFIVFEKSDTKTL----KKIAAYHQYYAVNKAVESTVQASSQEGDRRG 292 Query: 467 ILLAMATGTGKTRTAIAMMFRLIQSQR--FKRILFLVDRRSLGEQALGAFEDT-RINGDT 523 ++ G+GK+ + + +LI R ++ L DR L EQ F + ++ Sbjct: 293 GVIWHTQGSGKSLSMVFYSGKLIIDPRMENPTLVILTDRNDLDEQLHETFTNCQQLLRQE 352 Query: 524 FNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQ--------------------SDEPM 563 D K L S I T+Q + + + Sbjct: 353 PQKAEDRKDLRRLLKVASGGIVFTTIQKFMPMQEDMIQAEHSNIVNEPAAEYIGADIKAL 412 Query: 564 PVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP-- 621 + ++ DEAHR + R L +A I T TP Sbjct: 413 SERKNIVVIADEAHRSQY------------DFIDGFAKHLRDALP--NATFIGFTGTPIE 458 Query: 622 --ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ 679 +T +FG V Y + AV D + ++ + +E + EQ E ++ Sbjct: 459 TSDKNTQAVFGNYVDIYDIQQAVDDKATVPIFYESRLAKVHFEENEKVHLDEQFEELTEG 518 Query: 680 GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTG---SQKTLVFCVTNAH 736 E+ N + + P + +L + + K ++ ++ Sbjct: 519 EELSNRQQMRAK---WTRLEAIVGNPNRLEKIAKDLVYHFEQRNAVLDGKAMIVGMSRRI 575 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIKI--TGDAD---------KDARKVQTMITRFNKER 785 + + + + + +IK+ TG + + K + + R Sbjct: 576 CVDLYDAIIKLRPLWHSDDDDKGVIKVIMTGSSSDTLNMQKHIRSKSKRKAIGDRLKNPN 635 Query: 786 LP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDC 844 P +V+ D+ TG D P + + + +R L Q R R+ K + D Sbjct: 636 DPLKLVIVRDMWLTGFDAPCLHTLYVDKPMRGHNLM-QAIARVNRVF-TEGKEGGLVVDY 693 Query: 845 VDIYSTLESVDTMRPV---VVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVA 901 + I L++ +P ++ + V ++ + + + + Sbjct: 694 LGIAQELKTALAEYTASGGEGKPTLDQELAVAKMLELYEAIDYQLRHFDWRKFFTLSPEE 753 Query: 902 KLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKL 961 KL I + + + E + + N PH A Sbjct: 754 KLNFIPVIVDYIFSQ------------ENGEQSFTENTKNLLKAFAISVPHEKAMAIRDD 801 Query: 962 PGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNA 1021 ++ I++ N+ + + + K + + T + ++ FD+ + PN Sbjct: 802 VALFQAIKTRLVKISDRNEGGKTDEEMETAI--KQIISEAITADNVIDIFDAAGLKKPNI 859 Query: 1022 QPALQAVINRPRDLTRKGL-VELQEWFDRQHFEESSLRKAWKETRNEDIAARLI-----G 1075 + + + +DL +K L VEL + + ++ S + + ++ I G Sbjct: 860 EILDERFLQELKDLPQKNLAVELLKKLLKDEIKKKSKINLVESKKFSELLEDAIKRYHNG 919 Query: 1076 HIRR-AAVGDALKPFEERVDHALTR 1099 I + L PF E + A R Sbjct: 920 MIDTVEFLEKVLIPFAEEMKKANKR 944 >UniRef50_A1W1E8 Type I restriction-modification enzyme, R subunit n=9 Tax=delta/epsilon subdivisions RepID=A1W1E8_CAMJJ Length = 1031 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 149/1030 (14%), Positives = 313/1030 (30%), Gaps = 110/1030 (10%) Query: 161 KAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQ 220 +E + +Q + +L + E + T+ +L L N +L Sbjct: 2 SKAKTSEFDLEQFVISSLLEHGWCYEKPVRATDEVL--LETSLVNALCRLNPQLDLSKAN 59 Query: 221 ERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKA 280 E E+ + L+ +E L++ +S+ + N+ Sbjct: 60 EIYK---ELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADIINLIDFNNASNNEF 116 Query: 281 IAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN---NIDVPARLNESYRYSKCFDNG 337 IA E D VL++ P+ ++E K N + + N+ Y + + Sbjct: 117 IATNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATINSAYNQINTYKQTIPSI 176 Query: 338 FLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWY 397 F + S S++G Y Sbjct: 177 FTYNAFCVISDGYFARAGSISADFSRFMAWK----------SSDGINYAPNKSL------ 220 Query: 398 RDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPG-----MSELGLRYYQEDA 452 + + P+ LL+++ + + + D G ++ Y+Q A Sbjct: 221 -------EIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYA 273 Query: 453 VRAVEKAIVK------GQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSL 506 V + ++ ++ G+GK+ + + + I++ IL + DR L Sbjct: 274 VNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITDRNDL 333 Query: 507 GEQALGAFEDTR-INGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPV 565 +Q G F + D + L + S + T+Q E + + Sbjct: 334 DDQLFGTFASCANLLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPENDNVFECLSL 393 Query: 566 ARYDCIVVDEAHRGYILDKEQTEGELQFRSQ-------LDYVSAYRRILDHFDAVKIALT 618 ++ DEAHR + E + R L +A I T Sbjct: 394 RDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP--NATYIGFT 451 Query: 619 ATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 TP ++T +FG + Y AV DG + ++ E E E Sbjct: 452 GTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGKRLVNELDE 511 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTG---SQKTLVFC 731 ++ Q D Q + + + + + ++ + + K ++ Sbjct: 512 KLENQ---------DSQKAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVS 562 Query: 732 VTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT-----------GDADKDARKVQTMITR 780 ++ + A + +E+ + IK+ + Q + R Sbjct: 563 ISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANR 622 Query: 781 FNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSF 839 + +V+ VD+ TG D+PS+ + + ++ L Q R R+ +K S Sbjct: 623 MRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLM-QAIARVNRVY--KDKPSG 679 Query: 840 KIFDCVDIYSTLESVDTMRPVVVRPK--VELQTLVNEITDSETYKITEADGRSFAEHSHE 897 + D + I S L+ + + Q ++ + + + + ++ Sbjct: 680 LVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEKYFEL 739 Query: 898 QLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEV 957 AKL+ I+ + + ++ ++ L + + A ++ K A Sbjct: 740 DTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAIK 799 Query: 958 FNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFL-EAFDSLVQ 1016 L + + + + +VV + G L + F V+ Sbjct: 800 ARFLKFAKENENENLLNQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLLEVK 859 Query: 1017 RSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAA----- 1071 A + + D + + L A K+ N+ I++ Sbjct: 860 NMKRKNLAFEMLKKILNDEIKAREK---LSLTKAKKLAQMLSDAIKKYNNKLISSSEALD 916 Query: 1072 RLIGHIR------RAAVGDALKPFEERVDHA------LTRIKGENDWSSEQLSWLDRLAQ 1119 LI + A LK +E A +I G + + L+ + + Q Sbjct: 917 ELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILG----NEKLLALVSEILQ 972 Query: 1120 ALKEKVVLDD 1129 +K V +D Sbjct: 973 IIKNNVSIDW 982 >UniRef50_C2DZM9 Type I site-specific deoxyribonuclease n=8 Tax=Lactobacillus jensenii RepID=C2DZM9_9LACO Length = 1036 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 151/1016 (14%), Positives = 319/1016 (31%), Gaps = 89/1016 (8%) Query: 155 EQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAEL 214 E+ + + A + Q + + + + ++ + L L E N Sbjct: 6 EESIEKDALETLAKQGYQVIKSEVYNHTSKIIDAERNNDHTKFILEPRLAKVLKELNPGY 65 Query: 215 AKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPE 274 + R+A H+ + + + LI+ K ++KT+ Sbjct: 66 SDDI--YRRALHEFSKLADNPDMMINNHYMHKLLIEGVKIKTSENGENKTVTLHAIDFDN 123 Query: 275 PGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN---NIDVPARLNESYRYS 331 N +A + D +FV P+ E K+ NI V + Y Sbjct: 124 WENNDFLATNQFEIVQGEKSRRTDITVFVNGLPLITFELKKPDNENITVKEAYEQLQTYK 183 Query: 332 KCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKT 391 + +L T G + + Sbjct: 184 AEIPDYMKYNEILIASDGVNARVGS----------------------LTAGFDRFMRWRQ 221 Query: 392 KSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQED 451 + + + + +P+ LL ++ + + + ++ Y+Q Sbjct: 222 PKNELVPEG--SLELDILIEYMLKPKTLLNIIQNFIIFETNGDSTVKILTA----YHQYY 275 Query: 452 AVRAVEKAIVK------GQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRS 505 V A + ++ ++ TG+GK+ + + + + IL + DR Sbjct: 276 MVNKAVVAAERALKSNSDKRIGVVWHTTGSGKSLSMVFFSGIVARKLGNPTILVINDRND 335 Query: 506 LGEQALGAF-EDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL--QSDEP 562 L +Q G F + T + + + D +S I +T+Q +++ P Sbjct: 336 LDDQLFGTFAQAHEYLQQTPDHAENRDEVRDYMSRNSGGIVFSTIQKFSPDFERGENEMP 395 Query: 563 MPVARYDCIVV-DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP 621 + R D IV+ DEAHR + + + Y R L +A I T TP Sbjct: 396 VLTNRSDVIVMADEAHRTQYGLQAELTKNGV---RYGYAKYLRDALP--NASFIGFTGTP 450 Query: 622 ----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 TV +FG + Y +V D + II + G E + Sbjct: 451 IDTADKSTVAVFGNYIDVYDITQSVADHATVRIFYESHIIPLKLKSGSEEKFNELMNEYD 510 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS---QKTLVFCVTN 734 E +D+ ++ ++ E+ A+ ++ + K+++ ++ Sbjct: 511 LNTE-ASDSEKEARNKELTKLEAIAGAKQRLEAIAKHFISHFEARQKEEFGKSMIVEISR 569 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKIT-----------GDADKDARKVQTMITRFNK 783 +A + E+ H IKI + + + + R Sbjct: 570 INAVKLYNEIIKLRPNWESSDIHKGKIKIVMTSSPSDGPELSKHNTSKQDRRILQQRMKD 629 Query: 784 E-RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIF 842 IV+ VD+ TG D+PS+ + + ++ L Q R R+ NK S I Sbjct: 630 NSDELQIVIVVDMWLTGFDVPSLNTLYVDKPMKGHNL-IQAIARVNRVF--KNKESGLIV 686 Query: 843 DCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAK 902 D + I +L+ ++ + +V + + Y I + D ++S Sbjct: 687 DYIGIADSLKLALSIYSKDDKDQVGINVEKVLALLKDKYNIIKNDFLYGIDYSGFDSKDD 746 Query: 903 LQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLP 962 + R + + + +++ ++ +A + + A + + F + Sbjct: 747 IVRTRTVNKVANELIAEDKETIQKFCDVVTEAQKL-YALVAIQPAAQEIGPEIAFFRLVK 805 Query: 963 GFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDY-----DTPQDFLEAFDSLVQR 1017 FI +L D N + D+ + + Y + P+ L+ + Sbjct: 806 VFIMKLLSNNDDHERKNIDYRLRQMIDQSIIAEPEVDVYKSLGLEKPR--LDTISPEFLK 863 Query: 1018 SPNAQPALQAVINRPRDLTRKGLVE-LQEWFDRQHFEESSLRKAWKETRNEDIAARLIGH 1076 + + R + LQ + + L + E I ++ Sbjct: 864 KVQNLNEKSLAVRILEKILRGQIKICLQMNIVQGKKFQEMLEASIAEYNKRGINTEIV-- 921 Query: 1077 IRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVF 1132 IR L ++++ + K + E++++ D LA K VL ++ Sbjct: 922 IRE------LIEMAQKINAEQEKGKDL-GLTPEEIAFYDALANHEKAVQVLGEEKL 970 >UniRef50_A8ZXE8 Type III restriction protein res subunit n=9 Tax=Bacteria RepID=A8ZXE8_DESOH Length = 936 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 199/1020 (19%), Positives = 371/1020 (36%), Gaps = 189/1020 (18%) Query: 238 LNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 + +E ++R LID L ++GW ++ + + + IAE T F Sbjct: 1 MTKTEAQTRSELIDKHLAQSGWNVKDP-MQVVEEFDILMALPEGIAEPRTPY---EGHQF 56 Query: 297 ADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 +DYVL +P+AVVEAK+++ D ++ +Y E Sbjct: 57 SDYVLLGKDGRPLAVVEAKKSSKDAAIGREQAKQYCYNIQKQLGGE-------------- 102 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 +PFC+ TNG E ++ D+ + + + + Sbjct: 103 ------------------LPFCFYTNGLET----------YFWDLDN--YPPRKVVGFPT 132 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 ++L ++ ++ + + R YQ A+RAV + I + +++ LL MATGT Sbjct: 133 RDDLERF--QYIRRNHKPLTQELINTAIAGRDYQIRAIRAVLEGIEQKKRDFLLVMATGT 190 Query: 476 GKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 GKTRT+IAM+ L+++ ++ LFLVDR +L EQAL AF++ + + ++ + Sbjct: 191 GKTRTSIAMVDALMRAGHAEKALFLVDRIALREQALAAFKEHLPHEPRWPNV------GE 244 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 K +I+++T +++ + + +D IV+DE+HR Sbjct: 245 KLIAKDRRIYISTYPTMLNIIRDESQYLSPHFFDFIVIDESHRSIY-------------- 290 Query: 596 QLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDGFL 647 + Y ILD+F + + LTATP +T +IF G P + YT+ A + Sbjct: 291 -----NTYGEILDYFKTITLGLTATPTDIIDHNTFRIFHCEDGLPTFAYTFEEAAN--NV 343 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAF 707 Q++ + + + ++ + +FE + ++ Sbjct: 344 PPYLCSFQVMKIQTKFQKEGISKRTISLEDQKKLLLEGKDVAEINFEGTQLEKTVINKGT 403 Query: 708 NRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI 763 N + E + KT+ FC T AHA + + YPQ + + + Sbjct: 404 NTLIVKEFMEECIKDHNGVMPGKTIFFCSTIAHARRMEDIFDKL----YPQHKGELAKVL 459 Query: 764 TGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQM 823 + + K ++ +F +P + ++VD+L TG+D+ I N+VF + V S + QM Sbjct: 460 VSEDPRVYGKGG-LLDQFTNSDMPRVAISVDMLDTGIDVREIVNLVFAKPVYSYTKFWQM 518 Query: 824 KGRATRLCPE-------VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEIT 876 GR TRL + K F I DC D + + + + + ++ L + + Sbjct: 519 IGRGTRLLEIAKPKPWCIEKDVFLILDCWDNFEYFKLQPKGKEL--KQQLPLPVRLVGLR 576 Query: 877 DSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRD--------------------- 915 + K T+ + E + ++ + + ++ Sbjct: 577 LDKIEKATDTAQTTITEREIGKFRKQISELPQTSVVIKEAAAALARLEEENFWITLNHQK 636 Query: 916 ---RSETIDKQVRRLDELCQDAAGVNFNGF-ASRLREKGPHWSAEVFN------------ 959 I R + E A + S R + AE Sbjct: 637 LEFLRAEIKPLFRTVSEADFKAMRFERDLLEYSLARLRQEKEKAETLKAGIVEQISDLPL 696 Query: 960 ------------------------KLPGFIARLEKLKTDINNLND--------APIFLDI 987 L++L T + L P+ LD+ Sbjct: 697 SVNFVKAEETLIRASQTNHYWAKQDSIETENALDELNTRLGPLMKFREQDTGPGPMNLDL 756 Query: 988 DDEVVSVKSLYG----DYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVEL 1043 D + + + + + + E ++L+ P L + N +T L Sbjct: 757 TDTLHHKEWVEFGPQHEAVSISRYREMVEALIAELTEHNPVLLKIKN-GEAVTPDEANAL 815 Query: 1044 QEWF--DRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIK 1101 E + H E LR+A+K + A I IR + LK F E V A + Sbjct: 816 AELLHTEHPHITEDLLRQAYKNRK-----AHFIQFIRHILGIEILKTFPETVSEAFEQFI 870 Query: 1102 GEN-DWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTF-DDNLDTLLG 1159 ++ SS QL +L+ L + E+ ++ F ++ F ++ +L Sbjct: 871 QQHSSLSSRQLEFLNLLKNFIIEREKVEKKDLINSPFT-VIHPQGIRGVFSPAEINEILQ 929 >UniRef50_B0URP6 Type III restriction protein res subunit n=7 Tax=Bacteria RepID=B0URP6_HAES2 Length = 946 Score = 428 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 207/1020 (20%), Positives = 381/1020 (37%), Gaps = 183/1020 (17%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E++++ +ID +L +AGW + K P G+ A+ E+PTG G DY+ Sbjct: 11 PEQQTKDIIDEKLIQAGWLIQT-----VKAYNPNAGLGIAVREYPTG------TGPVDYL 59 Query: 301 LFVGLKPIAVVEAKRNN--IDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 LFV +P+A++EAK+ N + +S RY+K Sbjct: 60 LFVDREPVAIIEAKQENFAYKLNTIEEQSARYAK-------------------------- 93 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 + + I F Y + G R + + D ++ + +HRPE Sbjct: 94 -----SELKNIAQADIAFLYESTGTITR----------FTNCNDPTPRAREVFNFHRPET 138 Query: 419 LLEMLGSEPQKQNQWFADNPGMSE-------LGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 L + P ++ L LR Q A+ ++ ++ K L+ M Sbjct: 139 LQKWATEGKNTLRAKLKALPVLNPQNLPACELNLRDCQLTAIENIQTSLAKDLPRALIQM 198 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDT--FNSIFD 529 ATG GKT TAI +M+RL++ +RILFLVD +LGEQA D F +++ Sbjct: 199 ATGAGKTYTAINIMYRLLKYTGKRRILFLVDTVNLGEQAEQEMLVFTPPDDNRKFTELYN 258 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSD--------------------------EPM 563 + + ++ + T+Q + D + Sbjct: 259 TQVIKSPHIPKGVEVCICTIQRMYSLLKGEDVAIPDDSVELEEWENRLKEPLSVAYQPNL 318 Query: 564 PVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPAL 623 P +D I +DE HR + +R++LD+FDA I LTATP Sbjct: 319 PPEFFDFIFIDECHRSIY-------------------NLWRQVLDYFDAYLIGLTATPDN 359 Query: 624 HTVQIFG-EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEV 682 T F V Y++ AV DG + + I T+ + +G E VE Sbjct: 360 RTFGFFNQNVVSEYSHEQAVADGVNVGNEV-FLINTKISIQGGKFKAEELVEYRERTTRR 418 Query: 683 INDTLEDDQD-FEVADFNRGLVIPAFNRAVCNELTNYL-----DPTGSQKTLVFCVTNAH 736 +D + + +R +V P+ R + ++L + KTL+F ++H Sbjct: 419 KRWQQQDTDESYTAKQLDRDIVNPSQIRTIIRTFRDHLPIIFPNRQEVPKTLIFAQNDSH 478 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIKITGDADKD-----------ARKVQTMITRFNKER 785 AD +++ +R F + ++ KIT A D + +T++ F Sbjct: 479 ADDIIKMVREEFGQ-----GNEFCKKITYKAKDDILDENGDIVEQGEEPKTILANFRNSY 533 Query: 786 LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN---------- 835 P I VTVD++ TG D+ + ++F+R V+SR +EQMKGR TR + Sbjct: 534 HPRIAVTVDMIATGTDVRPLECLLFMRDVKSRNYFEQMKGRGTRTLDKDGLQKVSPPAPS 593 Query: 836 -KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRS---- 890 KT + I D + + +L++ + + V L + + + + Sbjct: 594 AKTHYVIVDAIGVTKSLKTSS--IQLDTKRSVSFAELGRAVVFGGAFDMDSISSLACRLS 651 Query: 891 ----FAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRL 946 +Q ++++ + L+ +D I+ + + + G++ + S Sbjct: 652 RLDKQLSQDEQQQISEILGGVALSQVVKDLFHAINAD--EIHKHACEQEGISLDETPS-- 707 Query: 947 REKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQD 1006 E+ + + +E + +D + + V+ G + + Sbjct: 708 -EETLLKVQKQRVRTATKTLSMELITALDEIRKQHEQKIDHELDEVTHV---GWAENDEA 763 Query: 1007 FLEAFDSLVQRSPNAQPALQAVINRP---RDLTRKGLVELQEWF--DRQHFEESSLRKAW 1061 + F + + ALQ N+P + T + EL + S + +A+ Sbjct: 764 ITQNFADWINEHKDGITALQIFYNQPYQRQAFTLAMIKELANAIKKAKPKLAFSHIWQAY 823 Query: 1062 KETRN-----EDIAARLIGHIRR-AAVGDALKPFEERVDHALTRI------KGENDWSSE 1109 ++ L+G IRR + + + PF V + + + + E Sbjct: 824 ARLDQVSEQKQNELTALVGLIRRVVGIDNKITPFAHIVRKNFQKWTFEHNARADKKLTEE 883 Query: 1110 QLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTF-----DDNLDTLLGKFSDY 1164 Q++WL + + + + D F+ F++ GG +D+ D LL + + Sbjct: 884 QMAWLAMIKEHIITSFSIKSDDFELTPFNQHGGLGQAYDVLCGITQNDDFDALLDEINQR 943 >UniRef50_Q2FSK3 Type I site-specific deoxyribonuclease, HsdR family n=8 Tax=cellular organisms RepID=Q2FSK3_METHJ Length = 1042 Score = 428 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 154/1020 (15%), Positives = 320/1020 (31%), Gaps = 93/1020 (9%) Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 +A E Q + + LE + N L + + + + Sbjct: 31 EVAPGERDQIRNSFEEYLLGSRLEDAIFRLNKTLPCDAHEAAQKILTNPGHTTLIQNNKT 90 Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 E I + R+ +R PE + ++ E N D V Sbjct: 91 VHEMLSGGITVEYRRKDGSVGGDQVRLIDFEHPENNEFLVVNQF--TIQEGKNHRRPDIV 148 Query: 301 LFVGLKPIAVVEAKRNN---IDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 LF+ P+ + E K + N+ Y + + F T+ + Sbjct: 149 LFINGIPVIIFELKNPTDERATLTIAHNQLQTYMQEIPSFFSYNTMAIISDGIQTRIGT- 207 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 + E + +T G + + + Sbjct: 208 ---------------------LSASLERFSRWRTIDGAQEAPNHIP-EIEVLIRGVCNKK 245 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVK-----GQQE-ILLAM 471 LL+++ + + + Y+Q AV ++ G + ++ Sbjct: 246 RLLDLIRFFIVFEED---ERGNTIKKLAGYHQYHAVNLAVRSTETAISDVGDRRCGVVWH 302 Query: 472 ATGTGKTRTAIAMMFRLIQSQ--RFKRILFLVDRRSLGEQALGAFEDTR-INGDTFNSIF 528 G+GK+ T + ++IQ+ + IL + DR L +Q G F R + T Sbjct: 303 TQGSGKSLTMVFYSGKIIQTPSLQNPTILVITDRNDLDDQLFGTFSRCRKLLRQTPIQAE 362 Query: 529 DIKGLTDKFPEDSTKIHVATVQSLVKRT--LQSDEPMPVARYDCIVVDEAHRGYILDKEQ 586 L S + T+Q ++ + + ++ DEAHR + Sbjct: 363 GRDHLKTLLSVASGGVVFTTIQKFFPEDENKETYPLLSDRKNIIVIADEAHRSQYGMHGK 422 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAV 642 + + R L +A I T TP T +FGE + Y + A+ Sbjct: 423 VSKK--GEISYGFAKYIRDALP--NASFIGFTGTPIDLQDKVTRNVFGEYISVYDIQQAI 478 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 D + +I+ E + ++ E ++ EVI ++ + A + Sbjct: 479 KDKATVPIYYESRIVDIRMNEQIKPLIDQEFEEVTENEEVIR---KEKLRTKWAALEAIV 535 Query: 703 VIPAFNRAVCNELTNYLDPTGS---QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDA 759 V ++L + K ++ C++ + + L +++ Sbjct: 536 GDEKRINEVADDLIRHFKQRSDAIEGKAMIVCMSRRICVELYKALVERQPDWDSHSDNEG 595 Query: 760 IIKI--TGDADKDARK---------VQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICN 807 +K+ TG A + + + RF P I + D+ TG D+P + Sbjct: 596 FLKVIMTGSAGDEKDFQKHIRPKSGRELLAKRFKDPEDPFKIAIVRDMWLTGFDVPCLHT 655 Query: 808 IVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVV---VRP 864 + + ++ L Q R R+ +K I D + + L+ P Sbjct: 656 MYIDKPMKGHTLM-QAIARVNRVWR--DKPGGLIVDYIGLAEELKKALVTYTESKGKGDP 712 Query: 865 KVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQV 924 + + +V+++ + G ++ +L + + D E + Sbjct: 713 VFDQERIVDKMMEKYEVCCHLFHGFDWSGWRGAPAATRLSILQAGFNYVLDDPERKSDFM 772 Query: 925 RRLDELCQDAAGVNFNGFASRLRE---KGPHWSAEVFNKLPGFIARLEKLKTDI-NNLND 980 + + EL Q A + A +RE A++ G +L + ++ Sbjct: 773 QHVLELSQAFALALPHEKAIEIREDVAYFQAVRAQIIKTSEGAGKSEYELNLAVKQIVSK 832 Query: 981 APIFLDIDDEVVSVKSLYGD-YDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKG 1039 + + L I D + GD ++FL ++ + + ++ R TRK Sbjct: 833 SIVPLGIVDIFKEMGKDVGDISVLSEEFLNDLLKYKNQNVAIAAMTRLLNDQIRARTRKN 892 Query: 1040 LVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGH---IRRAAVGDALKPFEERVDHA 1096 E +++ + E++ + ++ ++I L IR A E + A Sbjct: 893 TTEARKF--SEMLEQTINKYNNRKVTTQEILKELAQIAREIREAQQRGEDLGLTEA-ELA 949 Query: 1097 LTRIKGENDWSSEQL---SWLDRL----AQALKEKVVLDDDVFKTGNFHRRGGKAMLQRT 1149 G ND S+ + L ++ + ++E V +D ++ R + R Sbjct: 950 FYDALGVND-SAVVILGDDILKKIAQDLVKTIRENVTIDWSSRESVRAKMRVAIKRILRV 1008 >UniRef50_Q1NY78 Type I site-specific deoxyribonuclease HsdR n=6 Tax=Bacteria RepID=Q1NY78_9DELT Length = 1074 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 144/1007 (14%), Positives = 284/1007 (28%), Gaps = 127/1007 (12%) Query: 156 QQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAA--LEAQLAEKNAE 213 + + A + +L ++ EA + A L A L N Sbjct: 5 NEDAIEQTAMAWLAELGYQLAHGADLAFDGPAAERAAEANYGDVVLAGRLRAALERLNPA 64 Query: 214 LAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQA----DSKTLRFSK 269 L + + + + + R L D W A Sbjct: 65 LPA---EAVDEVLRRVQRADSPSLIENNRAFHRMLTDGV--DVSWMAAEGEQHAKAWLLD 119 Query: 270 GARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR---NNIDVPARLNE 326 ARPE A+ ++ E D V+FV P+AVVE K + N+ Sbjct: 120 PARPEVNDWLAVNQFTVV--ENKRTRRPDMVVFVNGLPLAVVELKNIADEKATLRHAFNQ 177 Query: 327 SYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYR 386 Y + + F LL E + +P + Sbjct: 178 LQTYKEQIPSLFAYNELLVISDGMEARIGS---------LTAGWDRFMP----WRTIDGT 224 Query: 387 ATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLR 446 + D + E LL+ + S ++ + Sbjct: 225 DLYREPGNERQSDGVVQPGLETVFKGLFHRERLLDYVLSFITFEHDGGETTAMAKKAAA- 283 Query: 447 YYQEDAVRAVEKAIVK----------------------------------------GQQE 466 Y+Q AV + + Q+ Sbjct: 284 YHQCHAVNKAVECTLSACGIEAPANLRFGRFAEAEAADPFAVAEDQPPYETAGQFGDQRI 343 Query: 467 ILLAMATGTGKTRTAIAMMFRLIQSQRF--KRILFLVDRRSLGEQALGAFEDTR-INGDT 523 ++ G+GK+ + + +LI+ ++ + DR L +Q G F R + T Sbjct: 344 GVVWHTQGSGKSLSMMFYASKLIRHPYMQHPTVVVITDRNDLDDQLFGTFAANRDLLRQT 403 Query: 524 FNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVV-DEAHRGYIL 582 L S + T+Q + P+ R + +V+ DEAHR Sbjct: 404 PVQAGGRDHLRQLLQVASGGVIFTTIQKFLPDNKGDAYPLLSERRNIVVMADEAHRSQY- 462 Query: 583 DKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTY 638 + L H A I T TP T +FG + +Y Sbjct: 463 -----------DFIDGFARHMHDALPH--ASFIGFTGTPIESDDRSTPAVFGNYIDKYDI 509 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADF 698 AV DG + ++ +E E ++ + + A Sbjct: 510 LRAVEDGATVPIYYESRLARIELEEA--ERPVIDTEFEEITEGEEEESRKQRMRSKWASI 567 Query: 699 NRGLVIPAFNRAVCNELTNYLDPTGS---QKTLVFCVTNAHADMVVEELRAAFKKKYPQL 755 + + V +L + + K LV C++ + + A + Sbjct: 568 EAMVGTDKRLKLVAADLVEHFENRQQAMQGKALVVCMSRRICVAMYNAIIALRPDWHDDD 627 Query: 756 EHDAIIKI--TGDADKD---------ARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIP 803 + +KI +G A + + + + RF + +V+ D+ TG D P Sbjct: 628 DQRGRVKIVMSGSASDELDWQPHIRGKKGREALARRFKDPDDELELVIVRDMWLTGFDCP 687 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVV-- 861 ++ + + + L Q R R+ +K ++ D + I L+ + Sbjct: 688 AMHTMYLDKPMGGHNLM-QAIARVNRVFR--DKPGGRVVDYLGIAEALKRALSNYTASGG 744 Query: 862 -VRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETI 920 + V+ V + + G + ++ I F E Sbjct: 745 RGQATVDQAEAVAVMREKVEVVRDLLHGFDYRAILAAPPAQRMSGIANAMDFILGLEEGK 804 Query: 921 DKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLND 980 + ++ + L + A + A +R++ + + A ++ Sbjct: 805 KRYLQAVTALSKAFALSVPHDEALAIRDEVGLFQEIRSSLAKATTADPRHSPQEMETAIR 864 Query: 981 APIFLDIDDEVVSVKSLYGDYDTPQDFL--EAFDSLVQRSPNAQPALQAVINRPRDLTRK 1038 + + V D P + + F + V++ P AL+ + + L Sbjct: 865 QLVSRAVSSNEVVDVFAAAGLDKPDISILSDQFLAEVRQLPQKNLALEML----KKLIND 920 Query: 1039 GLV-ELQEWFDRQHFEESSLRKAWKETRNE-----DIAARLIGHIRR 1079 + ++ + L +A ++ +N ++ LI R Sbjct: 921 EIKTRHRKNVVQARSFAEMLEEAVRKYQNRAIEAAEVIEELITLARE 967 >UniRef50_B7JWD2 EcoEI R domain protein n=2 Tax=Bacteria RepID=B7JWD2_CYAP8 Length = 875 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 200/987 (20%), Positives = 354/987 (35%), Gaps = 171/987 (17%) Query: 239 NLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 + +E ++R LID QL+ +GW + R + + + Sbjct: 3 SYNEADTRAKLIDPQLKLSGWGENQIEREHYFAKRQQITAGRIY--LVGDQSRRRQPCRV 60 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY+L + IAV+EAK + V A L ++ Y++ D Sbjct: 61 DYLLRYQGQAIAVLEAKDESHSVDAGLEQAKAYARKLD---------------------- 98 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 +PF +++NG + + + S+ L + P+ Sbjct: 99 ----------------LPFAFASNGHS------------FIEFDFFSSCSQELSTFPTPQ 130 Query: 418 ELLEM--LGSEPQKQNQWFADNPGMSE------------------LGLRYYQEDAVRAVE 457 +L + + + ++ A+N G RY+QE A+R V Sbjct: 131 QLWQRWETYRQGKVKSGRVAENGGNYGVLSVNPLLYPVCPESQCGKVPRYFQEVAIRRVI 190 Query: 458 KAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKR-ILFLVDRRSLGEQALGAFED 516 + I+K Q+ ILL MATGTGKT TA ++++L QS ++ ILFL DR L +Q+ F Sbjct: 191 ERILKQQRRILLTMATGTGKTFTAFQIVWKLKQSGWLRKPILFLSDRLILRDQSYNTFAP 250 Query: 517 TRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV--KRTLQSDEPMPVARYDCIVVD 574 S + + +++ A Q+L K +P + I++D Sbjct: 251 F-----VAPSADPRGVIEKGKFNSNRELYFALYQALDALKEGESLFSQIPADFFGLIIID 305 Query: 575 EAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA----LHTVQIF 629 E HR + IL HF A+++ +TATP + T F Sbjct: 306 ECHRSGFG-------------------KWNGILQHFTGAIQLGMTATPKQDESIDTYAYF 346 Query: 630 -------------------GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKG 670 P Y+Y+ + DGFL ++ T + G++L + Sbjct: 347 CAEESEIPLDPDDNSKGTWKPPAYQYSLGQGIDDGFLATYKVH-KVRTTVDKNGLHLQE- 404 Query: 671 EQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLV 729 RI I + +E Q + F R + +P + + + L L G + KT+V Sbjct: 405 ---ARIQGAEIYIPEDVEPRQQYLTGQFEREITLPDRTKTMVSHLAGLLRQFGEREKTMV 461 Query: 730 FCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKER--LP 787 FCV HA +V L+ F + I+ + + Q + +F P Sbjct: 462 FCVDMTHARLVARLLQNEFAELGYSNYAVPIVS-------EEGEAQAWLEQFQDSDRLTP 514 Query: 788 NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDI 847 + T +LL+TGV++PS NIVF++ + S IL++Q+ GR +R+ P K F+I D V Sbjct: 515 IVATTAELLSTGVNVPSCRNIVFMKPISSPILFKQIIGRGSRIDPATGKEWFRIIDYVGA 574 Query: 848 YSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII 907 + D + L IT + T I +GR + E LV + Sbjct: 575 SRLFDQWDR----------PIGELPQAITGARTSII---EGRVIHGDTEEFLVGASVSAL 621 Query: 908 GLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIAR 967 T D RL+ L + G R RE + N+ + Sbjct: 622 IGVNQQLSPILTDDNGYFRLEALPAGKIRLFLRGNGFRSREITLETAE---NETLTVVLA 678 Query: 968 LEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 L +K + + + + I DEV + G+ T +L+ + ++ L Sbjct: 679 LNSVKPPVGKIRVEGLEVTIADEVTFIVDATGEQLTLAQYLDYTKAKIRGYVPNWSQLHQ 738 Query: 1028 VINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALK 1087 + + + L L + + + A + A + Sbjct: 739 IW-----IDSEQRKLLLRELTTASVYIEVLGEVLAQPK-----ADQFDLLAHIAFNKPIH 788 Query: 1088 PFEERVDH--ALTRIKGENDWSSEQLSWLDRLAQALKE--KVVLDDDVFKTGNFHRRGGK 1143 +ERV+ + E + L L + + +++ +VF+ F G Sbjct: 789 TRDERVEAFLNYEQWYLEAQTEEAREVILGLLDKYRLAGIEEIVNPEVFRLSPFQEMGQI 848 Query: 1144 AMLQRTFD--DNLDTLLGKFSDYIWDE 1168 + +NL + + ++ + Sbjct: 849 KGVILRLGTMENLRQIFREIQQKLYRQ 875 >UniRef50_C8PU19 Type I site-specific deoxyribonuclease, HsdR family n=9 Tax=Bacteria RepID=C8PU19_9SPIO Length = 1081 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 151/990 (15%), Positives = 316/990 (31%), Gaps = 113/990 (11%) Query: 203 LEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADS 262 LE L NA L ++ QE + + + + + L + + I+ + G + S Sbjct: 86 LEDALYRLNAGLPQEAIQEALSALQRFENAELLQKNELFMDYLQNGINVRYFDNG-KQQS 144 Query: 263 KTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNN---ID 319 + + P +W ++ T D +LF+ P+ ++E K + D Sbjct: 145 TIVYLADYKNPSLNSFIIANQWTYIENST---KRPDMLLFLNGLPVVLIELKSPSREETD 201 Query: 320 VPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYS 379 + Y + F+ + Sbjct: 202 ASEAYRQIRNYMAEIPSLFIYNAICVMSDQFTSKAGTI---------------------- 239 Query: 380 TNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPG 439 T+G + KTK G + + + E LL+++ + ++ Sbjct: 240 TSGEDRFMEWKTKDGSY--ENTQYAQFDTFFEGIFKKERLLDIIKNFICFSHEGL----D 293 Query: 440 MSELGLRYYQEDAVRAVE----KAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK 495 + ++ Y+Q AVR KA+ + + G+GK+ + + L Q + Sbjct: 294 VFKILAGYHQYFAVRKAIISTQKAVKTDGKAGVFWHTQGSGKSLSMVFYAHLLQQVLQSP 353 Query: 496 RILFLVDRRSLGEQALGAFEDTR-INGDTFNSIFDIKGLTDKFPEDST-KIHVATVQSLV 553 I+ + DR L Q G F + + L I T+Q Sbjct: 354 TIVVITDRNDLDNQLYGQFAKCKAFLRQEPVQATSRQDLKRLLAGRQANGIFFTTMQKF- 412 Query: 554 KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQ---TEGELQFRSQLDYVSAYRRILDHF 610 +S EP+ R ++ DEAHR E+ T+ E + R I + Sbjct: 413 ---EESAEPLSERRNIIVMADEAHRSQYGLSEKIKMTKNEAGEDIAKRVIGTARIIRNSL 469 Query: 611 -DAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGV 665 +A I T TP T ++FG+ + Y AV DG ++I + Sbjct: 470 PNASYIGFTGTPISAADRSTREVFGDYIDIYDMTQAVEDGATRPVYYESRVIKLKLDQET 529 Query: 666 YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTG-- 723 + + + + + + + + E+A L ++ ++ + + Sbjct: 530 LQLIDAEYDAAAQRTD---EYVIEKSKHELARMEALLGSDEVIDSLVRDIIEHYEGNRAC 586 Query: 724 --SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA---------R 772 + K +V + + A + ++ P + +T D D R Sbjct: 587 LLTGKAMVVAYSRSIAMKIYRKMLELR----PIWTETVAVVMTSTNDDDESWRGIIGNKR 642 Query: 773 KVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 + + T+F P I + VD+ TG DIPS+ + + + L Q R R+ Sbjct: 643 RRDELATKFKDNTSPLKIAIVVDMWLTGFDIPSLATMYVYKPMAGHNLM-QAIARVNRVF 701 Query: 832 PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSF 891 +K + D + I L+ + +++ + K++ Sbjct: 702 --QDKEGGLVVDYIGIMRALKQAMNDYTNRDKKNYGDTDILSAARPTFLEKLS------- 752 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP 951 L+ + +R++TI V L ++ A +F + LR+ Sbjct: 753 ---ICRDLLHGYGYEKFKTGSDLERAKTISGAVNFLMARGKEKAKESFMKESFLLRQALS 809 Query: 952 H---WSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLD------IDDEVVSVKSLYGDYD 1002 AE F + ++ I++ + G + Sbjct: 810 LCSSTIAESLRFESAFFEAVRVFLVRLSYTGGGRRLSLPELNRRINELLTQSIKSSGVVN 869 Query: 1003 TPQDFLEAFDSLVQRSPNAQPALQ---AVINRPRDLTRKG--LVELQEWFDRQHFEESSL 1057 D +AF ++ + + L + + + + + + F + Sbjct: 870 LFSDISQAFSLFSPGFLEDIAKMKERNLAVELLKRLLAEQVAIYKGRNFVKSEKFSKMLQ 929 Query: 1058 RK----AWKETRNEDIAARLIGHIRRAAVGDA------LKPFEERVDHALTRIKGENDW- 1106 + NE++ A ++ R+ + L P E ALT+ + D+ Sbjct: 930 QTVNAYLNGMLTNEEVIAEMLKLARQITAAEQEGKQLGLNPEEAAFYDALTKPEAIKDFY 989 Query: 1107 -SSEQLSWLDRLAQALKEKVVLDDDVFKTG 1135 + E ++ L + L++ +D + ++ Sbjct: 990 ENDELIAITKELTETLRKNKNIDWQLRESA 1019 >UniRef50_C6A4W6 Type III restriction enzyme, res subunit n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A4W6_THESM Length = 841 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 196/956 (20%), Positives = 348/956 (36%), Gaps = 147/956 (15%) Query: 239 NLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 N SE ++R LID +L AGW + + + A Sbjct: 5 NYSEADTRAKLIDPKLHDAGWNENRIKREYVISLGRILNN----------DGSRTSPKRA 54 Query: 298 DYVLF---VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 DYVLF + IAVVEAK+ + D L ++ RY+K D Sbjct: 55 DYVLFYPDIQGHIIAVVEAKKASEDPYKGLEQAKRYAKTLD------------------- 95 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 PF YSTNG + + S E+ Sbjct: 96 -------------------APFAYSTNGLKIV------------EYDFLTKQSNEFSEFP 124 Query: 415 RPEELLEMLGSE-------PQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEI 467 PE L E + + + + RYYQ+ AVR + I+ G++ + Sbjct: 125 EPENLWERYVKRRGLDEAIKRSEKNPLEVPYYIRDKKPRYYQDVAVRRALEEILLGRKRL 184 Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSI 527 LL MATG+GKT A + ++L +S K+ILF+VDR L QA AFE Sbjct: 185 LLTMATGSGKTYVAFQIAWKLRKSNFLKKILFIVDRVYLRNQAYNAFEAFG--------- 235 Query: 528 FDIKGLTDKFPEDSTKIHVATVQSLV--KRTLQSDEPMPVARYDCIVVDEAHRGYILDKE 585 L + ++ AT Q+L K + + +D +++DE HR Sbjct: 236 NSRWELKGDNFNFAKDVYFATYQTLYSEKNGKRVYQYFDPDYFDLVIIDECHRSGW---- 291 Query: 586 QTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPALHT----VQIFGEPVYRYTYRT 640 + + IL +F +A+ + LTATP + FG+PVY Y Sbjct: 292 ---------------NRWHDILGYFNNAIHLGLTATPKRSDNVDVYKYFGDPVYEYKLAQ 336 Query: 641 AVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNR 700 + DG+L + I++ T +EG K + + + I + E + + +F + Sbjct: 337 GIEDGYLAPPEEIIRVYTNIDKEGKITFKELRSAGVKLE---IPEEAELKEYYTAEEFEK 393 Query: 701 GLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDA 759 +++P +A+ N + +L+ T KT+VFC T HA V L F K+ + Sbjct: 394 SIILPDRTKAIVNWIAQFLESTNPFAKTVVFCPTQRHAREVAALLNNHFNNKFN--VDNY 451 Query: 760 IIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRIL 819 I D + + ++ N E P + TVD+L+TG+D+P I NI+FL+ + S++ Sbjct: 452 AYPIISDDPEAHQVLKNSFAS-NDEIFPVVATTVDVLSTGIDVPPIKNIIFLKHIGSKVE 510 Query: 820 YEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSE 879 + Q+ GRA+RL + K +F++ D + D + +P +N + + Sbjct: 511 FHQIIGRASRLAENMRKFTFRVIDFTGATRLFDKWD-IPDYQAKPNQPTDWYLNLLIVDD 569 Query: 880 TYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNF 939 V + G+ + E + +R + F Sbjct: 570 ETLDPIKGADVVVHVKPGSPVHIIGGDDGIIFLSNVPREAVFVDIRARGYKPKKTYVSTF 629 Query: 940 NGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYG 999 I L+ + + + + + I++E + G Sbjct: 630 -----------------PRPDKQATITLLKLRPENKPPITVSGLKVYIEEENRVKIEVKG 672 Query: 1000 DYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRK 1059 + ++++ V++ + L+ + L R+ + +E + + + Sbjct: 673 NKILDAEYVKYSQEQVRKRVASLEDLKKIW-----LNRQVRLRFKEELKKAGIDLKMI-S 726 Query: 1060 AWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALT-RIKGENDWSSEQLSWLDRLA 1118 K+ D L + +A + +ER + + + + + + L Sbjct: 727 LIKKVSEADEFDLLANLLFQA----PIVSRDERAKLFMEVKKEFLDRFGERGREIILDLI 782 Query: 1119 QALKEKV---VLDDDVFKTGNFHRRGGKAMLQRTFDDN--LDTLLGKFSDYIWDEL 1169 + + D VF NF GG + R F L +L + ++ +L Sbjct: 783 DHYRLYGLSEIEDPKVFNLPNFQIYGGLKGIARIFGGARGLKKILEEIEKGLYADL 838 >UniRef50_A9NFS8 Type I site-specific restriction-modification system, R (Restriction) subunit n=15 Tax=Bacteria RepID=A9NFS8_ACHLI Length = 1047 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 143/1039 (13%), Positives = 317/1039 (30%), Gaps = 103/1039 (9%) Query: 151 KQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEK 210 + +E+ E Q + Y + + L L L + Sbjct: 8 ESDVEEATLEWFQELGYQTEFGPNIAPEGPYPERASYTDVILIERLKESLFRLNKSLPKS 67 Query: 211 NAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKG 270 E A + K ++ + + +D + +R Sbjct: 68 AIEDAIRQITIPKQIALIENNRTFHKMITDG-------VDVSYHDQTGRLVHSQVRIFDF 120 Query: 271 ARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAK---RNNIDVPARLNES 327 P + ++ E+ + D V+FV P+ V E K N+ + + + Sbjct: 121 NEPTNNDYLVVNQFTVV--ESRVEKRPDVVVFVNGLPLVVFELKTASDENVSIKSAFRQV 178 Query: 328 YRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRA 387 Y + + F+ + + T +T+G+E Sbjct: 179 KNYQQSISSLFVYNSFNVISDGLHAKAGTITSDEDRFMTWR----------TTDGKEIAP 228 Query: 388 TMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRY 447 T + + + + L+++ Q G ++ Y Sbjct: 229 TTIPQ-------------LETLIKGMFDKKRFLDIIKQYVLFQ----KHESGYIKILAGY 271 Query: 448 YQEDAVRAVEKAI-----VKGQQE-ILLAMATGTGKTRTAIAMMFRLI--QSQRFKRILF 499 +Q AV + G + ++ G+GK+ + + +L+ Q I+ Sbjct: 272 HQYHAVNTALEKTYEATSAHGDRRIGVIWHTQGSGKSLSMVFYAGKLVISQELSNPTIVI 331 Query: 500 LVDRRSLGEQALGAF-EDTRINGDTFNSIFDIKGLTDKFP-EDSTKIHVATVQSLVKRTL 557 + DR L +Q F + + + + + L + DS I T+Q Sbjct: 332 ITDRNDLDDQLFLTFSKSSDLLRSIPDQAASREHLKELLNGRDSGGIIFTTIQKFSPDDN 391 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIAL 617 + + + ++ DEAHR + + + Y R +A I Sbjct: 392 GNVTALTNRKNVIVLADEAHRSQYGFSAKVVKSQDEAFEKYGYAKYLR-DSLPNASYIGF 450 Query: 618 TATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQV 673 T TP +T +FG+ + Y AV D + +I + E L Sbjct: 451 TGTPIETTDKNTRAVFGDYIDIYDMSRAVEDKTTVKIFYESRIAQIDFTEEYDLIDENYD 510 Query: 674 ERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTG------SQKT 727 E Q E + L+ A + + + V ++ + + K Sbjct: 511 EITEYQEETQKEGLKRK----WARLEAIVGSESRIKTVAKDIVEHFEKRQATMETPVGKA 566 Query: 728 LVFCVTNAHADMVVEELRAAFKKKYPQ--LEHDAIIKITGDADKDA---------RKVQT 776 ++ ++ A + E + + + L+ + +TG + + +T Sbjct: 567 MIVAMSRRIAVELYEAIVKLRPEWHSDDVLKGKIKVVMTGSSSDPESWQKHIGTKQTRET 626 Query: 777 MITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN 835 + R +V+ D+ TG D+PS+ + + ++ L Q R R+ E Sbjct: 627 LSERMKDNNDELELVIVRDMWLTGFDVPSMHTMYVDKPMQGHNLM-QAIARVNRVFKE-- 683 Query: 836 KTSFKIFDCVDIYSTLESV------DTMRPVVVRPKVELQTLVNEITDSETYKITEADGR 889 K + D + I L+ + V V + + ++ ++ + Sbjct: 684 KQGGLVVDYIGIADRLKKALMQYTDNDREQVGVDTALAVSVMLEKLDIVRDILHQHDYSK 743 Query: 890 SFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELC------QDAAGVNFNGFA 943 F + E+L ++ I + +R K V L + ++A N Sbjct: 744 YFGDRYSEKLQVIMETIDFVIGLREERKNDFLKFVSELSKAYSLCSTTEEAEKHNVEIGF 803 Query: 944 SRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDT 1003 + G + +K +L I+ + +DI E+ K Sbjct: 804 FKSVRAGIIKLSTDTSKKKSVDQLDSELNQLISKSLKSDKVIDIMAEIGLSKPDIS--IL 861 Query: 1004 PQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKE 1063 +FLE F+ + ++ + + + + + + RK +V+ +++ + + + + Sbjct: 862 SDEFLEEFNKMNHKNVAIELLKRLIKGKLKMIARKTIVQSRQFSELLEDALAKYQA--RL 919 Query: 1064 TRNEDIAARLIGHIRRA------AVGDALKPFEERVDHALTRIKGENDW--SSEQLSWLD 1115 + + LI + L E AL+ + + Sbjct: 920 IDSTVVIQELIELAKDITKAAESGKESGLTEDEFAFYEALSSNMTAKEVMGTDILKEIAK 979 Query: 1116 RLAQALKEKVVLDDDVFKT 1134 L + +K +D ++ + Sbjct: 980 ELTKKIKSSTTIDWNIRDS 998 >UniRef50_C3QTD9 Type I restriction enzyme EcoKI R protein n=3 Tax=Bacteroidales RepID=C3QTD9_9BACE Length = 905 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 205/995 (20%), Positives = 370/995 (37%), Gaps = 176/995 (17%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 EE++R +ID L AGW+ + + + + ADY+ Sbjct: 3 PEEKARIIIDRMLNDAGWEVVDRNHYSPEVSAI-----------AVEEGLLKGNREADYL 51 Query: 301 LFVGLKPIAVVEAKRNNIDV--PARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 LF+ K + V+EAK+ ++ + +++ +Y++ VP Sbjct: 52 LFLNGKAVGVLEAKKESVSIYSEIVADQAEKYTR----------------------GVPH 89 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 + +W + +P Y +NGRE + +RD R+ + +L + H P+E Sbjct: 90 WCQAWMN-------PLPLVYLSNGRE----------LLFRDTREVDSEYISLNKIHSPKE 132 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 ++++LG FA P + GLR Q +A+ +E + G L+ +ATG GKT Sbjct: 133 IVKLLG-----LKDDFAGLPTLKRKGLRDCQYEAITKLENSFRSGHDRALMVLATGAGKT 187 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI--NGDTFNSIFDIKGLTDK 536 TA +RL+ KR+LFLVDR +LG+QA G F R+ NGD FN+IF ++ L Sbjct: 188 YTACLAAYRLLAFTSMKRVLFLVDRNNLGKQAEGEFGTFRLTENGDPFNTIFGVERLKTA 247 Query: 537 FPEDSTKIHVATVQSLVKRTLQSDE-----------------------PMPVARYDCIVV 573 + + +AT+Q L D +P +D I++ Sbjct: 248 KIPNDANVVIATIQRLFSLLSGDDFIDDDNEADYVVDGTRNMNLPVHPNLPPDYFDLIII 307 Query: 574 DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPALHTVQIF-GE 631 DE HR ++R +L++F A I LTATPA+ T+ F Sbjct: 308 DECHRSIYG-------------------SWRSVLEYFSSAKMIGLTATPAVETLAFFNNN 348 Query: 632 PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS-PQGEVINDTLEDD 690 + YT +++DG +D +I T+ ++G + +G+ V +I+ G+ N ++ Sbjct: 349 LIVNYTLEKSIVDGVNVDYRV-FRIKTQVTEDGGAIREGDIVRKITRYTGKTENIETQET 407 Query: 691 QDFEVADFNRGLVIPAFNRAVCNELTN--YLDPTGS----------QKTLVFCVTNAHAD 738 + + NR ++ PA + + + Y + KTL+F + +AHA Sbjct: 408 TTYTRRELNRSIINPAQIKLILETYRDSVYTEMFNDPQREPNFDYLPKTLIFALNDAHAS 467 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 +V+ + F ++ + + KIT A +I F ++ I VTV L+ T Sbjct: 468 NIVKIAKEVFGRE----DDTFVQKITYSAGDS----NELIRHFRNDKDFRIAVTVTLVAT 519 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLC----------PEVNKTSFKIFDCVDIY 848 G D+ + ++F+R V S LY QMKGR R +K F + D V + Sbjct: 520 GTDVKPLEVVMFMRDVESDSLYTQMKGRGVRTIGDEQLRNVTPNAHSKDLFFLVDAVGVT 579 Query: 849 STLESVDTMRPVV-VRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRII 907 V T + L+ L+ I+ E + L ++L RI Sbjct: 580 EHEHYVTTSGVGSNAETLLSLRQLLERISHGE-----------LLDEHLRLLASRLSRIH 628 Query: 908 GLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIAR 967 A + D ++ N + P++ + + Sbjct: 629 NKANEEQRNEFIRLAGTDMRDMASHIYEALDNNLLPEYVNINEPNYERKGLVRPLAIHPD 688 Query: 968 LEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 + I N I + +D ++ + D +AF+ V + AL+ Sbjct: 689 AREYL-CILNAGFVTILMPGEDTLIEKGFSIEEAH---DTTQAFEQYVNEHRDEIEALRI 744 Query: 1028 VINRPRD-LTRKGLVELQ--EWFDRQHFEESSLRKAW-----------KETRNEDIAARL 1073 + N + +T L +L+ + F S L + ++ + Sbjct: 745 IYNNNGEPITYAMLKDLENRMKMENYKFNPSQLWNTYSIINPSSVVHFGTKEEKEALTNI 804 Query: 1074 IGHIRRAAVGDA-LKPFEERVDHALTRIKG--ENDWSSEQLSWLDRLAQALKEKVVLDDD 1130 I +R A L+ G + + Q + + ++ + Sbjct: 805 IQLVRYAYHQVTELRSLSSMAAQRFELWCGQIQRTMTEAQKNTIRQIVNYIVANGSCTIK 864 Query: 1131 VFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYI 1165 K + + R F + ++ I Sbjct: 865 EIKE---DDKTIALQMIRKFGT-----IAAVNEAI 891 >UniRef50_B0S350 Type I restriction-modification system restriction subunit n=17 Tax=Bacteria RepID=B0S350_FINM2 Length = 1045 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 139/991 (14%), Positives = 306/991 (30%), Gaps = 98/991 (9%) Query: 191 ETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLID 250 E + + LE L N +++ ++ + + + + + + I+ Sbjct: 32 ERDLHSPLYEKELEDALYRLNPDMSDDAIRDALYKLHNFENGELVQKNAVFMDYIQHGIE 91 Query: 251 AQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAV 310 + G + S + + P+ +W ++ D +LF+ P+ + Sbjct: 92 VRYFVKG-EERSGIVYLVDYSNPDNNSYVVANQWTFVENS---NKRLDVLLFLNGLPVVL 147 Query: 311 VEAKRNNID---VPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTS 367 VE K + + + Y + F+ + Sbjct: 148 VELKSPSREETAASEAYLQIRNYMHEIPSMFIYNCICVMSDHLTSKAGTI---------- 197 Query: 368 GKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEP 427 T+G + KTK G + + LL+++ + Sbjct: 198 ------------TSGEDRFMEWKTKDGNY--ENTQYAQFDTFFEGMFERARLLDIIKNFI 243 Query: 428 QKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVK----GQQEILLAMATGTGKTRTAIA 483 N+ ++ Y+Q AV ++ + + G+GK+ + + Sbjct: 244 CFSNEGLK----RFKILAGYHQYFAVNKAIESSKHACETDGKGGVFWHTQGSGKSLSMVF 299 Query: 484 MMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTR-INGDTFNSIFDIKGLTDKFPEDS- 541 L + I+ + DR L +Q G F + L + Sbjct: 300 YAHLLQTALNSPTIVVITDRNDLDDQLYGQFMKCKDFLRQEPVHASSRANLKELLEGRQV 359 Query: 542 TKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVS 601 I T+Q +S E + R ++ DEAHRG KE+ + E ++ Sbjct: 360 NGIIFTTMQKF----EESFECLSERRNIIVMADEAHRGQYGLKERVD-EKTGEIKIGSAR 414 Query: 602 AYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQII 657 R L +A I T TP +T ++FG+ + Y AV DG +++ Sbjct: 415 IIRNALP--NATYIGFTGTPVSMKDRNTREVFGDYIDIYDMTQAVEDGATRPVYYESRVM 472 Query: 658 TRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTN 717 E ++ + ++ +V + + E+ L ++ +++ + Sbjct: 473 KLKLDEQTLHLIDQEYDVMAENADVY---VIEKSKKELGQMEAILGNDKTIDSLVDDILD 529 Query: 718 YLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA-- 771 + + K ++ + A + +++ P + +T Sbjct: 530 HYENYRENLLTGKAMIVAYSRPIAMKIYKKILELR----PGWTDKVAVVMTNSNKDPEDW 585 Query: 772 -------RKVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQM 823 R + F + P I + VD+ TG D+PS+ + + + L Q Sbjct: 586 SHIIGNKRHKDELAMSFKDDESPLKIAIVVDMWLTGFDVPSLATMYVYKPMHGYNLM-QA 644 Query: 824 KGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKI 883 R R+ +K + D V I S L+ + + K+ Sbjct: 645 IARVNRVF--GDKEGGLVVDYVGIASALKQAMNDYTARDKKNYGDTDVAKVAYPKFLEKL 702 Query: 884 TEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFA 943 + + + + + ++ R D L + Sbjct: 703 SICRDLFHGYDYSKFMEGTDLERSRAISGAVNFIVAPIRKKEREDYLKEALLLKQALSLC 762 Query: 944 SRLREKGPHWSAEVFNKLPGFIAR-----------LEKLKTDINNLNDAPIFLDIDDEVV 992 S L E+ A F + + R L ++ IN L A + + + Sbjct: 763 SSLAERELRIEAAFFESVRVLVTRIMNQGEGKKISLHEINARINELLKASVKSEGVINLF 822 Query: 993 SVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHF 1052 S S G FL+ + +++ + + + + + +V+ +++ + Sbjct: 823 SDVSG-GFNLFDPKFLDEISKMKEKNLAVELLKKLISEQVKIYKHTNVVKSKKF--SEII 879 Query: 1053 EESSLRKAWKETRNEDIAARLIGHIRRAAVGDA------LKPFEERVDHALTRIKGENDW 1106 +++ NE + L+ ++ A L E ALT+ + D+ Sbjct: 880 QQAMNAYLNGMLTNEQVIEELLNLAKQIAEAHKEGEQLGLTADELAFYDALTKPQAIKDF 939 Query: 1107 --SSEQLSWLDRLAQALKEKVVLDDDVFKTG 1135 + E ++ LA L++ +D + Sbjct: 940 YENEELIAITKELADTLRKNRTIDWQKRDSA 970 >UniRef50_A5VJW3 Type I site-specific deoxyribonuclease, HsdR family n=11 Tax=Lactobacillus RepID=A5VJW3_LACRD Length = 1041 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 138/1005 (13%), Positives = 304/1005 (30%), Gaps = 87/1005 (8%) Query: 168 VEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHK 227 ++ ++ Y + E + + + A + E R A H+ Sbjct: 18 LDEVGYQVYKSASYTSPNVEIDAERNNDHTQPILKGQLENALRKLNSGLDDEVYRNAIHQ 77 Query: 228 EITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTG 287 + + + +I K + + +T+ N IA Sbjct: 78 FEMLADSPDMMLNNHKLHELIIGGAKVKTSIKGEDRTITLYPIDFKNVDNNTFIATNQFT 137 Query: 288 KDETGNQGFADYVLFVGLKPIAVVEAKRN---NIDVPARLNESYRYSKCFDNGFLRETLL 344 + ++ D LF+ P+ E K N+ + + Y + + +L Sbjct: 138 MKQGEHERRPDITLFINGLPLVTFELKNPANANVGIQQAFAQFSTYKEEISSYMQYNEIL 197 Query: 345 EHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTR 404 T G + + + D Sbjct: 198 IVSDGINARAGS----------------------LTAGIDRFMRWREPKNVDIDDSM--M 233 Query: 405 NMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVK-- 462 + + P +LL ++ + + +D ++ Y+Q V K K Sbjct: 234 ELEVLIKYMLTPSDLLNIIQNFILFE----SDGDKTIKILAAYHQYYMVNKAVKRTSKVL 289 Query: 463 ----GQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAF-EDT 517 ++ ++ TG+GK+ + + + + IL + DR L +Q G F Sbjct: 290 ADPDDKRIGVVWHTTGSGKSLSMVFYSGIVARKLGNPTILVINDRNDLDDQLFGTFAAAH 349 Query: 518 RINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPV---ARYDCIVVD 574 + + ++S I +T+Q +E MP+ ++VD Sbjct: 350 EYLQQNPDHAESRGEVRKYMSKNSGGIVFSTIQKFSPNFDAGEEHMPILTNRSNVIVMVD 409 Query: 575 EAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFG 630 EAHR + + + Y R L +A I T TP TV +FG Sbjct: 410 EAHRSQYGMQAKLTDNGI---RYGYAKYLREALP--NASFIGFTGTPINTEDKSTVAMFG 464 Query: 631 EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDD 690 + Y AV D + + ++ + + +++ + + + N + Sbjct: 465 NYIDVYDITQAVNDHATVRIYYESHVFPLKLKDN-AIDEYQKLIKEAGINDDPNLRETER 523 Query: 691 QDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS---QKTLVFCVTNAHADMVVEELRAA 747 ++ + ++ + K+++ ++ +A + E+ Sbjct: 524 RNRAFTRLEALAGAKPRLEKIAQHFVHHFESRQKEEFGKSMIVEMSRQNAVKLYNEIAKL 583 Query: 748 FKKKYPQLEHDAIIKI-----TGDADKDARKVQTMITRF-------NKERLPNIVVTVDL 795 + H IK+ D + A+ + RF + + IV+ VD+ Sbjct: 584 RPEWINDDIHKGKIKVIMTSNASDGPEFAKFKTSKQDRFTLQQRMKDNDDELQIVIVVDM 643 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD 855 TG D+PS+ + + ++ L Q R R+ NK S I D + I L Sbjct: 644 WLTGFDVPSMNTMYIDKPMQGHNL-IQAIARVNRVF--KNKDSGLIVDYIGIADALRFAL 700 Query: 856 TMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRD 915 + + KV + + E Y I + D ++S R + + Sbjct: 701 NVYTKDDQGKVGINVDRALMLLKEKYDIIKEDFLYGIDYSEFDSDDSQTRQKAVTRVVNE 760 Query: 916 RSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDI 975 + D+ ++ ++ + +++ + F + F+ +LE Sbjct: 761 LAAEDDETKQKFFDV-VTELQKAYALVSTQPEAQDLSAEIAFFKTVKVFLTKLEAPDDPD 819 Query: 976 NNLNDAPIFLDIDDEVVSV-------KSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAV 1028 ++ +++ +Y D + L+ N Sbjct: 820 DSKEIHSSVDYRMQQLLDQSIISEPNVDIYRDLGLERPNLDLISEQFLEKVNEITEKDLA 879 Query: 1029 INRPRDLTRKGLVELQE-WFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALK 1087 I L + + Q+ + E L+++ + I + ++ L Sbjct: 880 ITLLEKLLKGQVKAYQKTNIVKGKKFEELLQESIDDYNRRGITSEIV--------IRKLI 931 Query: 1088 PFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVF 1132 + ++ K S E++++ D LA K L ++ Sbjct: 932 DMAKEINKEQQEGKNL-GLSKEEVAFYDALADHEKAVQELGEEKL 975 >UniRef50_D0LNE3 Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LNE3_HALO1 Length = 1012 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 159/990 (16%), Positives = 293/990 (29%), Gaps = 121/990 (12%) Query: 152 QQLEQQVREKAQTQAEVEAQQQKLVALNG-YIAILEGKQQETEAQTQARLAALEAQLAEK 210 + + + + A +E A + EA+ +A L L L++ Sbjct: 6 RDWNELSQSEDPAIALLERLGYSYAAPEALEAERDNLRSPILEARLRAALGRLNPWLSDD 65 Query: 211 NAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKG 270 N + T + + L + G S T+RF Sbjct: 66 NLTRSVATLTRGSYASLAEASEKLHTALTYGVA--------LEQDRGDGKKSHTVRFFDF 117 Query: 271 ARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVP---ARLNES 327 +P ++ + D V+F P+AV+E K + + + Sbjct: 118 DQPSNNDFLVTRQFQVRGV--RMNIYPDVVVFANGIPLAVIECKSPTLGERWRDQAIKQL 175 Query: 328 YRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRA 387 RY + DN + V + + + ++ + E++ Sbjct: 176 SRYQELGDNYRNEGAPKLFETVQLVIACCGQGASYGTVGTPRRFW----------AEWKD 225 Query: 388 TMK-TKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLR 446 T+ + R AL P LL++ + A++ R Sbjct: 226 PYPLTREQLADLLGRAPTPQDVALSGLLAPANLLDITRNFVAFD----AESGRTVRKVCR 281 Query: 447 YYQEDAVRAVEKAIVKGQ----QEILLAMATGTGKTRTAIAMMFRLIQSQ--RFKRILFL 500 Y Q AV I + ++ G+GK+ T + + +L + +L + Sbjct: 282 YKQFMAVNKALARIHASDEPAARGGVVWHTQGSGKSLTMLWLALKLRRDPALENPALLIV 341 Query: 501 VDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV------- 553 DR L Q F + L + + K + TVQ Sbjct: 342 TDRVDLDRQIRDTFTHCGF--PNPEPASSVAHLKELLSQPGGKSVMTTVQKFQETSPAQP 399 Query: 554 -----KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILD 608 + + A+ ++VDEAHR + RR L Sbjct: 400 AGGSKRTVRPLYPRLSAAKNVFVMVDEAHRTQY---------------RGLATNMRRALP 444 Query: 609 HFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEG 664 +A + T TP T+Q FG + YT AV DG + PI +R A+ Sbjct: 445 --NACFLGFTGTPIDKRDRSTLQTFGPYIDTYTIEQAVADGATV----PIFYESRLAELR 498 Query: 665 VYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT-- 722 + ++V + + + PA A+C +L + + Sbjct: 499 IEGQSLDRVFDRVFADRSDEEKSAIKKKYATERTVA--TAPARVEAICLDLIEHFERAIR 556 Query: 723 -GSQKTLVFCVTNAHADMVVEELRAAF---KKKYPQLEHDAIIKITGDADKDARKVQTM- 777 K V V+ A E L+ + H+ +T AD+ +R + Sbjct: 557 PSGFKAQVVTVSRDAAVQYYETLQKLNGPPAALIMSIAHNDGAHLTRYADELSRDAKNRT 616 Query: 778 ITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKT 837 I RF + P I+V D+L TG D P + ++ L Q R R NK+ Sbjct: 617 IERFKEASAPEILVVCDMLLTGFDAPVEQVMYLDAPLKEHTLL-QAIARTNR--NAENKS 673 Query: 838 SFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHE 897 I D + L+ + A + E Sbjct: 674 YGLIVDYWGVSQDLQEALGIFSPGD----------------------VAGAMTPKEDELP 711 Query: 898 QLVAKLQRIIG-LATFNRDRSETIDKQVRRL-DELCQDAAGVNFNGFASRLREKGPHWSA 955 +L A+ + ++G A R+ + +D V L DE + F FA + A Sbjct: 712 RLEARHREVVGFFAGLAREARDDLDACVNTLADEDRRAEFDAAFKRFARSMELLLADPRA 771 Query: 956 EVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLV 1015 + ++ ++ + D V + + + ++ Sbjct: 772 APYRDDLAWLGKIRMAAKARYHDQAGLDIGDCSGAVRKLIEDAVRAEGVEILVKQVSLFS 831 Query: 1016 QRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIG 1075 + AL R ++ E+ D SLR+ ++ Sbjct: 832 KEFGEKIEALGKPEARASEMEHAIRHEITVKLDENPAFYQSLRER---------LEEIVT 882 Query: 1076 HIRRAAVGDALKPFEERVDHALTRIKGEND 1105 ++ V A E + ++GE++ Sbjct: 883 MRKQQRVDAA--KQLELFQDLIDELRGESN 910 >UniRef50_B2GHN4 Type I restriction enzyme R protein n=3 Tax=Micrococcineae RepID=B2GHN4_KOCRD Length = 1044 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 152/984 (15%), Positives = 319/984 (32%), Gaps = 103/984 (10%) Query: 160 EKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTE 219 E QA +E + L + + + E ++ + Sbjct: 6 ENVVEQAALEYFAE-LGYRRVHGPDIAPGEPGAERESYEDVMLWGHVRDALRRINRGADA 64 Query: 220 QERKAYHKEITDQAIKRTLNLSEEESRFLIDAQ-LRKAGWQADSKTLRFSKGARPEPGVN 278 K + + ++ + + + + + G +T R EP N Sbjct: 65 ALVAEAVKTVQRAESQSPIDENARLHKLITEGVPVEHRGDDGLLRTTRLWLMDFDEPENN 124 Query: 279 KAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN---NIDVPARLNESYRYSKCFD 335 +A E G D ++ V P++++E K + + + N+ Y Sbjct: 125 DWVAVSQFTIVENGKNRRPDVLVMVNGLPLSLLELKNPAAEHATLKSAWNQVQTYRHDIP 184 Query: 336 NGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGI 395 + F+ + A+ Y +++ + + + GRE + Sbjct: 185 SVFVPNAVTVISDG--TSAAMSSYSGAFEHYAPWKTIE--------GREVVSNRPA---- 230 Query: 396 WYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP------GMSELGLRYYQ 449 + + P+ L++L + ++ D + + +Y+Q Sbjct: 231 ----------LEVLIKGVFEPKRFLDLLKNFVVFSDETVTDKSTGQPTRALVKRVAKYHQ 280 Query: 450 EDAVRAVEKAIVK------GQQEILLAMATGTGKTRTAIAMMFRLIQSQR--FKRILFLV 501 AV A ++ V+ ++ ++ G+GK+ + ++++ R ++F+ Sbjct: 281 YWAVNAAVESTVQASSPDGDRRGGVVWHTQGSGKSFEMVFYAAKIMRDPRMANPTLVFIT 340 Query: 502 DRRSLGEQAL-GAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD 560 DR L +Q F RI +T L K S I T+Q Sbjct: 341 DRNDLDDQLFGETFAPARILPETPVQAATRSDLRAKLKRASGGIVFTTLQKFAPGEDGDT 400 Query: 561 EPMPVARYDCIVV-DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTA 619 P+ R + IV+ DEAHR E + R + R L A + T Sbjct: 401 NPVLTDRRNVIVIADEAHRSQYGFSETLDRH--GRLKSGLAKHMRDALPG--ATYLGFTG 456 Query: 620 TP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVER 675 TP T +FG+ V Y AV DG + ++ E + + E + Sbjct: 457 TPIESKDKSTRAVFGDYVDVYDLTRAVEDGATVRIFYESRLAKIELSEVDHAALDELADE 516 Query: 676 ISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS---QKTLVFCV 732 I+ E T + + + A V ++ + + K ++ + Sbjct: 517 ITESVEEDTATAAKSR---WSRLEAVVGAEARLDLVARDIVEHWEKRRESLFGKGMIVTM 573 Query: 733 TNAHADMVVEELRAAFKKKYPQLEHDAIIKI--TGDADKDARK---------VQTMITRF 781 + A + E++ A + IK+ TG A A + + R Sbjct: 574 SRRIAVRLYEKIVALRPDWHSDDPAQGKIKVVMTGSASDPAEFQPHIHSKDVRKDLKLRA 633 Query: 782 NKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK 840 P +V+ D+ TG D PS+ + + ++ L Q R R +K Sbjct: 634 KNADDPLELVIVRDMWLTGFDAPSMHTMYVDKTMQGAGLM-QAIARVNRTFR--DKPGGL 690 Query: 841 IFDCVDIYSTLESV-----DTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHS 895 I D + +++ L++ + R P E+ ++ E D + S E + Sbjct: 691 IVDYIGVFANLQNALSEYSPSDREQAGVPIDEMVQVMLEKHDIVRGLLHGVQFDSSPELT 750 Query: 896 HEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSA 955 Q + + +++ + DR+ + QV L + A + + Sbjct: 751 ASQRLNEYAKVLDFVMADPDRTSRFNDQVLALAKAFALAGARD--------EAAAIRNNV 802 Query: 956 EVFNKLPGFIARLEKLKTDINNLNDAPIFLDI---------DDEVVSVKSLYGDY----- 1001 +F + I +++ + I + D+VV V L G Sbjct: 803 RLFTDVRAAILKIQNPDSGRGGSGAVGIDTALGQLLNEAVAADQVVDVYKLAGVDTPDLS 862 Query: 1002 DTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAW 1061 +FL +F + + + + ++ R + R +V+ +++ + +E+ R Sbjct: 863 ILSDEFLNSFAEKDKPNLQMGLLHRLLNDQIRTVQRTNIVQARKF--SELLDEAINRYTN 920 Query: 1062 KETRNEDIAARLIGHIRRAAVGDA 1085 + +I A L+ ++ Sbjct: 921 RSLTTAEIIAELVKLAKQMRDDQK 944 >UniRef50_Q73J29 Type I restriction-modification system, R subunit n=2 Tax=Treponema RepID=Q73J29_TREDE Length = 934 Score = 413 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 191/1003 (19%), Positives = 378/1003 (37%), Gaps = 165/1003 (16%) Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 L E+++R IDA L AGW ++ PE +A+ E ADY Sbjct: 16 LPEQKARVYIDAYLEDAGWTVVNRNEF-----VPEAINAQAVRENIL-----KGNKEADY 65 Query: 300 VLFVGLKPIAVVEAKRNNIDVP-ARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 +L++ K I V+EAKR ++ ++ Y + Sbjct: 66 ILYLDGKAIGVLEAKRKENNLGLEVAEQAQNYGNILPD---------------------- 103 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 + +PF + +NG + ++++ D + K L + P++ Sbjct: 104 -------WIRAWKTPLPFIFLSNG----------ETLLFKNMHDEKPSYKVLKKMLTPKD 146 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 ++++ G + + P + GLR Q +A+ +E + +G ++ L+ +ATG GKT Sbjct: 147 IVKLAGGDIDSEYAKLPSIPAVGSKGLRECQFEAITKLELSFKQGFKKALIVLATGAGKT 206 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI--NGDTFNSIFDIKGLTDK 536 TA +RL+ KR+LFLVDR +LG+QA G F ++ G+ F+ + + L Sbjct: 207 FTACTAAYRLLNYTSAKRVLFLVDRNNLGKQAEGEFGTYKLTETGNPFSDEYIVHRLKSV 266 Query: 537 FPEDSTKIHVATVQSL--------------------------VKRTLQSDEPMPVARYDC 570 + + ++T+Q L + + +P +D Sbjct: 267 EKIGNASVVISTIQRLFAVLTGQEINDAGDDEETDNDENAPGKRIQFTGNILLPPDFFDV 326 Query: 571 IVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPALHTVQIF 629 I++DE HR D +R++L +F +A I LTATP F Sbjct: 327 IIIDECHRSIYGD-------------------WRQVLTYFNNAKIIGLTATPTPEAEAFF 367 Query: 630 G-EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS-PQGEVINDTL 687 V YT ++ DG + +I T ++ G + GE+++++S G+ Sbjct: 368 NKNRVVNYTLEKSIADGVNVPPRV-YRIKTEISESGGTIKDGEKIKKVSNWSGKRKTQKQ 426 Query: 688 EDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTG----------SQKTLVFCVTNAHA 737 +D+ F D +R +VIPA V + + + KTL F T HA Sbjct: 427 HEDRQFTKTDIDRSVVIPAQIETVVQAYKDSIYESLYPDRKKDWTMIPKTLFFAKTENHA 486 Query: 738 DMVVEELRAAFKKKYP--QLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 + +++ ++ FK ++P ++ IT + +I+ F + I +TV L Sbjct: 487 EDILKAIKKVFKNEFPNGEIPEHYAQLITCKSGNS----NQLISDFRNNKDFRIAITVTL 542 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC----------PEVNKTSFKIFDCV 845 + TG DI + +VF+R + S +LY QMKGR R +K + + D V Sbjct: 543 VATGTDIRPLEILVFMRDIHSEVLYTQMKGRGCRTFADDKLRNVTANAASKDFYYLVDAV 602 Query: 846 DIYSTLESVDTMRPV-VVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQ 904 + +S+ T ++ + L+ L+ + E + + K + Sbjct: 603 GVTEHEKSMPTPGGNGDIKKVLPLKDLLEHLAHGELSD----NNLELLADYLSNVNKKAE 658 Query: 905 RIIGLATFNRDRSETIDKQ-VRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPG 963 + + + T+ + V + + ++ + + + + + N + Sbjct: 659 SEDIIELNDLLGAITVKQLAVNIFESIAPESCSLPPYKDINEPNTERKILISPLINNVKA 718 Query: 964 FIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQP 1023 LE I I L+ D ++ + ++++ F++ + + + Sbjct: 719 RKKLLEINAGFI------KIALEKQDTLIYAGFSK---EQAKEYIATFETYLDDNKDEIE 769 Query: 1024 ALQAVINRPR-DLTRKGLVELQEWF--DRQHFEESSLRKAWKETRNED------------ 1068 AL+ + N+ + +T L +L++ F+ L ++ E Sbjct: 770 ALRILYNQEKIAITYTMLKDLEKKLIAYNNQFKPEFLWTCYQTLDGESGKVKPLNRETEL 829 Query: 1069 -IAARLIGHIRR-AAVGDALKPFEERVDHALTRIKGE--NDWSSEQLSWLDRLAQALKEK 1124 + LI +R + D L + R G+ ++ EQ+ + ++A+ + + Sbjct: 830 GVFTNLIQLVRYGYKLDDELVSLKRRFGSYFNLYCGQAWRKFTPEQIEIVRQIAEYIVQN 889 Query: 1125 VVLDDDVFKTGNFHRRGGKAMLQRTFD-DNLDTLLGKFSDYIW 1166 + + F D L+ + S Y++ Sbjct: 890 GCITNIELNNAKHDL---FVKAVPIFGADKLNAEMQTISKYLF 929 >UniRef50_A5TW30 Type I site-specific deoxyribonuclease restriction subunit n=6 Tax=Bacteria RepID=A5TW30_FUSNP Length = 1127 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 206/1033 (19%), Positives = 364/1033 (35%), Gaps = 202/1033 (19%) Query: 236 RTLNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 N SEE++R L ID L KAGW D K + E K T + Sbjct: 190 NNNNFSEEDTRKLFIDTFLVKAGWNLDDKNIFEY--------------EVEGIKSTTSGK 235 Query: 295 GFADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 G DYVL+ P+A++EAK+ ++ ++ Y++ + F Sbjct: 236 GKIDYVLWGDNGIPLAIIEAKKAELNAKKGEFQALEYAEALEKKFN-------------- 281 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEW 413 P + TNG E + ++ + + + Sbjct: 282 -------------------FFPIRFVTNGFEIFI------------YENKNSIPRRVYGF 310 Query: 414 HRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 +R EELL+++ + D E+ RYYQE AV+ + + G ++ LL MAT Sbjct: 311 YRKEELLKIIARR--NEKIVANDISINKEIIDRYYQERAVKKAIENYISGNRKSLLVMAT 368 Query: 474 GTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGL 533 G+GKTR AI+++ L + KR LFL DR +L +QAL F+ + + + + L Sbjct: 369 GSGKTRVAISIVDCLSRLNMVKRTLFLADRVALVKQALNNFKKSLPD-------YTLVDL 421 Query: 534 TDKFPEDSTKIHVATVQSLV----KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 + D+ KI +T Q+++ K + V +D I+VDEAHR Sbjct: 422 VSEKDRDNAKIVFSTYQTMMAESEKTREDGTDKYGVGAFDLIIVDEAHRSIY-------- 473 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATPA----LHTVQIFG----EPVYRYTYRTA 641 Y + ++FD++ + LTATP +T ++F EP Y A Sbjct: 474 -----------QKYGDLFEYFDSLILGLTATPKDEIDRNTFKVFDMNSKEPTDSYDLFEA 522 Query: 642 VIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRG 701 D +L+ P I+ T N E + E + ++ ++ N Sbjct: 523 AKDKYLL--LPKIKEGTLNYPENGIVYSKLSEEEKEKYESLFDEEDSMPEEISGDSLNSW 580 Query: 702 LVIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEH 757 V L S KT++F + HAD +VE Y L Sbjct: 581 FFNDGTTSKVLTTLMEEGYKIESGDKLGKTIIFAKNDRHADHIVEIFNKL----YKNLGG 636 Query: 758 DAIIKITGDADKDARKVQTMITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRS 816 + KIT KVQ +I RF N P I V+VD+L TG+DIP I N+VF +KV+S Sbjct: 637 EFCQKIT----TKVEKVQALIDRFVNPNSFPQIAVSVDMLDTGIDIPEILNLVFYKKVKS 692 Query: 817 RILYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTL 871 + + QM GR TR + +K F I D +S E D + L + Sbjct: 693 KAKFWQMIGRGTRKYKDIYGIGKDKEDFLILDFCRNFSYFEMKDRFEEDNTKLTKSLSSK 752 Query: 872 VNEITDSETYKITEADGRSFAEHSH--EQLVAKLQRIIGLATFNRDRSETIDKQVRRLD- 928 + E +K+ + + + ++ E LV ++ +I +T V++ Sbjct: 753 IFENKIKMIFKLQDLEYQMDEKYKEFWENLVNEVYNLIASLNEENISVKTRISYVKKYKN 812 Query: 929 -ELCQDAAGVNFNGFASRLREK--GPHWSAEVFNKLPGFI----------ARLEKLKTDI 975 EL ++ + + L E+ K I ++E K +I Sbjct: 813 IELLKNLEEKDVDEIIKNLSSLPFAIEEKTEMEKKFENLILKTQLKLFDNKKIENEKVEI 872 Query: 976 NNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRS-PNAQPALQAVI----- 1029 +++ E+ + +++L+ D L + N L + Sbjct: 873 SDITKELSKKGTIKEIQKNANYIMKIIKDENYLKNIDILELENLRNIIEPLTIFLDSNGK 932 Query: 1030 -------NRPRDLTRKGLVEL----------QEWFDRQHFEESSLRKAWKETRNEDIAAR 1072 + + + ++ +E F + +L K N ++ Sbjct: 933 HLNYIVGDLEDNFISMEIRDINVFGSVYLNSKEKFQKYLDNNKNLLSIKKLKNNIELDVE 992 Query: 1073 LIGHIRRAAVGDALKPFE-----------------------------------ERVDHAL 1097 + +++ + E E ++ Sbjct: 993 DLKELKQLLYSNEEVDLESLKTENNSEIEKISNVYGKNESFGIFIRSLVGLDREAINKEF 1052 Query: 1098 TRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLD-- 1155 + ++S Q+ ++ + + + + + + F DN D Sbjct: 1053 SEFLNTEKFNSNQIELINLIIENIVKYGAYSKNEI--PKLSNDILGTSISNIFTDNNDLQ 1110 Query: 1156 ---TLLGKFSDYI 1165 ++ K + + Sbjct: 1111 KIVDIIDKINSNV 1123 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 66/205 (32%), Gaps = 15/205 (7%) Query: 5 SNFEFLKGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLGLLLNIPPCEN--- 61 SNF+FLKG Y + AE N P T+ R+ E + NI N Sbjct: 2 SNFDFLKGDFFDLYELCLEAEENCYTKPRTSAFYSRLALEFCVALVYKFENIQRPYNSTV 61 Query: 62 QHDLLRELGKIAFV-DDNILSVFHKLRRIGNQAVH-----------EYHNDLNDAQMCLR 109 +D + + + + + +R+ GN A H D N A CL+ Sbjct: 62 LNDFINNKDFQCLFKNQSQVEGLNLIRKFGNSAAHILKNVIDNTTKTLTLDRNIALNCLK 121 Query: 110 LGFRLAVWYYRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVE 169 F +W F +N+ E + + V++ + Sbjct: 122 GLFDFTLWIGYCYGSTLQMDDIKFDDKYIPKNISKPESANDIKVADNYVQDSVNNIKVIP 181 Query: 170 AQQQKLVALNGYIAILEGKQQETEA 194 ++ + N + + ++ + Sbjct: 182 VKKHNITINNNNFSEEDTRKLFIDT 206 >UniRef50_Q0AIL4 Type I site-specific deoxyribonuclease, HsdR family protein n=5 Tax=Proteobacteria RepID=Q0AIL4_NITEC Length = 1072 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 144/1042 (13%), Positives = 317/1042 (30%), Gaps = 112/1042 (10%) Query: 162 AQTQAEVEAQQQKLVALNGYIAILEGKQ------QETEAQTQARLAALEAQLAEKNAELA 215 +E +Q L L +E ++ +++E ++ + + Sbjct: 1 MAFLSEAAVEQALLDQLRALGYSIEQEEIIGPDGKQSEHESHDEVVLKKRFEDAVARLNP 60 Query: 216 KQTEQERKAYHKEITDQAIKRTLNLSEEESRFL---IDAQLRKAGWQADSKTLRFSKGAR 272 + R+ ++ + L + + L +D + + + Sbjct: 61 GLPLEARQDAVHKVMQSELPSLLEENRRLHKLLTEGVDVEYYTNDGTLTAGKVALINFEH 120 Query: 273 PEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAK---RNNIDVPARLNESYR 329 PE A++++ N D V+FV P+ V+E K + N+ Sbjct: 121 PEQNDWLAVSQFVVI--NDQNNRRPDVVVFVNGLPLGVIELKAPGNAGAHLLGAFNQLQT 178 Query: 330 YSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATM 389 Y + F LL + E Sbjct: 179 YKQQIPQLFNTNALLVTSDGITARVGS----------------------LSADLERFMPW 216 Query: 390 KTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQ 449 +T G + + M+ + L++L G+ ++ Y+Q Sbjct: 217 RTTDGTRI-EPKGMPEMATLIEGVFEQGRFLDLLRHFTVFG----ETGGGLIKIIAGYHQ 271 Query: 450 EDAVRAVEKAIVK----------------------------GQQEILLAMATGTGKTRTA 481 AV+ + ++ + ++ G+GK+ Sbjct: 272 FHAVKKAVVSTLRASQPSDRLGVAEDPAVYGLPSVKVQPPGDHKAGVIWHTQGSGKSLLM 331 Query: 482 IAMMFRLI--QSQRFKRILFLVDRRSLGEQALGAFEDTR-INGDTFNSIFDIKGLTDKFP 538 L+ ++ L DR L +Q F + + T D + L Sbjct: 332 AFYAGLLVFDSRMANPTLVVLTDRNDLDDQLFATFAMCKDLLRQTPVQAQDREHLRTLLN 391 Query: 539 EDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVV-DEAHRGYILDKEQTEGELQFRSQL 597 S + T+Q ++D P R + +V+ DEAHR + + + Sbjct: 392 RASGGVIFTTLQKFSPAADETDFPALTNRSNIVVIADEAHRSQYGFRAKVASK-TGEIAY 450 Query: 598 DYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPP 653 + R L H A I T TP ++T +FG + Y AV DG + Sbjct: 451 GFAKYLRDALPH--ASFIGFTGTPIEAADVNTPAVFGHYIDIYDISRAVEDGATVPIYYE 508 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCN 713 ++ E ++E + + + + + V Sbjct: 509 SRLARIELDEDEKPHIDAEIEALLEDEVEASAERTKQK---WSTVEALVGSDKRLALVAA 565 Query: 714 ELTNYLDPT---GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI--TGDAD 768 +L + + S + ++ C++ + +++ + ++ IKI TG A Sbjct: 566 DLVQHFEDRVAALSGRAMMVCMSRRICVALYDQIIKLCPDWHSNDDNAGSIKIVMTGTAS 625 Query: 769 KDAR---------KVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRI 818 + + R + P +V+ D+ TG D PSI + + +R Sbjct: 626 DPVEWQQHIGNKARRDLLAKRARDPQDPLRLVIVRDMWLTGFDAPSIHTMYIDKPMRGHG 685 Query: 819 LYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD--TMRPVVVRPKVELQTLVNEIT 876 L Q R R+ +K + I D + I L+S +P + ++ + V + Sbjct: 686 LM-QAIARVNRVFR--DKPAGLIVDYIGIAQNLKSALAQYSKPDQDKTGIDEREAVAVLL 742 Query: 877 DSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAG 936 + G + +L + + D+ + + + + A Sbjct: 743 EKVEIVRDMFFGFDYQTGLGGTPSERLAMMASAIEWILDKQQQWAAAEKTPEA-SRQARR 801 Query: 937 VNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKS 996 +G S + S++ + + + ++ + D ++++ Sbjct: 802 RFADGVLSLSKAFALVASSDEARGIREEVGFFQAIRAAL-VKTAGGAGAIRQDRELAIQQ 860 Query: 997 LYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKG--LVELQEWFDRQHFEE 1054 + + ++ + ++P+ + + + +K L L++ + Sbjct: 861 IVSRAVVSTEIVDILAAAGIQTPDISILSDEFLLEVQQMEKKNLGLEALRKLLNDSIRSR 920 Query: 1055 SSLR----KAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQ 1110 + +A+ E + IA I A V L + + A R E S ++ Sbjct: 921 TRTNVVETRAFTERLEDAIARYHANAITTAEVLQELINLAQDIRAARNR-GEEQGLSLDE 979 Query: 1111 LSWLDRLAQALKEKVVLDDDVF 1132 +++ D LA+ V+ DD Sbjct: 980 IAFYDALAENESAVQVMGDDNL 1001 >UniRef50_B4E7C8 Type I restriction component of type I restriction-modification system n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4E7C8_BURCJ Length = 1031 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 143/969 (14%), Positives = 275/969 (28%), Gaps = 116/969 (11%) Query: 219 EQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSK--------TLRFSKG 270 + E+ +A + E +R+ D + A + R Sbjct: 58 PSLPHSVSAEVALEASRPPHPTLVENNRWFHDLLINGAPVEYKDAATGETRGGRARLIDF 117 Query: 271 ARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAK---RNNIDVPARLNES 327 P + + G D VL+V P+ V+E K + + +++ Sbjct: 118 DNPANNDFLVVRQLTVAGAN-GKTIRPDLVLYVNGLPLVVIELKDPANTSATLEVAIDQL 176 Query: 328 YRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRA 387 RY + F+ LL P Sbjct: 177 GRYKTVAPDLFVPSLLLVASDGLLTRVGSITSGLQRFTPWRPAHGGEP------------ 224 Query: 388 TMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRY 447 + + E P LL+ L S + + + + Y Sbjct: 225 -----------------TLEALIRELLNPSALLDYLLSCVAFEED---ERGNIVKKVAGY 264 Query: 448 YQEDAVRAVEKAIVKG------------QQEILLAMATGTGKTRTAIAMMFRLIQSQR-- 493 +Q AVR +++ + ++ G+GK+ T + + L+++ Sbjct: 265 HQFRAVRKARASVISAIKTSARSDDVTAGKGGVVWHTQGSGKSLTMLMLAGTLVRAAEMA 324 Query: 494 FKRILFLVDRRSLGEQALGAFED-TRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL 552 I+ + DR L +Q F + + L S + T+ Sbjct: 325 NPTIVIVTDRNDLDDQLFETFAMGRALLRQDPMQAEGREHLRQLLDRASGGVVFTTIHKF 384 Query: 553 VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA 612 + E ++ DEAHR E R L +A Sbjct: 385 TEAHGMISERA----NIVVMADEAHRSQYGFVE------------GGARWMREALP--NA 426 Query: 613 VKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLS 668 + T TP T +FGE Y R AV DG + +I+ E Sbjct: 427 TFVGFTGTPLMAGDRVTQNVFGEYADVYDVRQAVADGATVPIYYEPRIVKLTIDETGAKE 486 Query: 669 KGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTG---SQ 725 ++ + + + E +T E+ + P + V + + + Sbjct: 487 AEAKIAQYATRDEYGQETPENVRI----SLEELYGAPERLQRVAKFVVEHWEERRAAMEG 542 Query: 726 KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI--TG---------DADKDARKV 774 K ++ ++ A + +E+ + + + IK+ TG + + Sbjct: 543 KAMLVTMSRDIAARLYDEICKLRPAWHDEDDAQGAIKVVMTGGPNDSEHMMRHSRSKAQR 602 Query: 775 QTMITRFNKE-RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE 833 +++ RF + V VD+ TG D+P + + + L Q R R+ Sbjct: 603 KSLADRFKDPTDDFRLAVVVDMWLTGFDVPCAHTMYLDKPLAGHNLM-QAIARVNRVY-- 659 Query: 834 VNKTSFKIFDCVDIYSTLESVD-TMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFA 892 K I D + + L T ++ L +E + + Sbjct: 660 GEKPGGLIVDMIGLADPLADALATYASATGETDKPVKELQDEAIPAMQSAFEQLRSFFHD 719 Query: 893 EHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPH 952 + E L A R++ + D + V DE G A+ P Sbjct: 720 FNYAEALDAIPSRVLRVYLGAIDHVLDVKHTVG--DETGWQRFGGMVKRLATAFALAVPR 777 Query: 953 WSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDID---DEVVSVKSLYGDYDTPQDFLE 1009 F R+ + P D D +V+ + G + ++ Sbjct: 778 EETRDITPHLAFFQRVAAMIRKRLTDERGPTESRSDGSPDIDAAVRQVIGGAVDAGEVID 837 Query: 1010 AFDSLVQRSPNAQPALQAVINRPRDLTRKG--LVELQEWFDRQHFEESSLRKAWKETRNE 1067 F + + + R L +K L L++ Q + E Sbjct: 838 LFAAAGLDAARLDILSDDFLERVSALEQKNLALETLRKLLADQIKLSERSNLVQAQKFRE 897 Query: 1068 DIAARLIGH----IRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKE 1123 + ++G+ I A + L + V A + S E+ ++ D L + Sbjct: 898 ALERAMLGYTNKQITTAQMITQLLALAKWVREA-KLHGQDLGLSDEEAAFYDALTENGSA 956 Query: 1124 KVVLDDDVF 1132 K + D Sbjct: 957 KEAMKSDQL 965 >UniRef50_C2QLA3 DEAD/DEAH box helicase:Helicase, C-terminal:Type I site-specific deoxyribonuclease HsdR n=3 Tax=Bacillus cereus RepID=C2QLA3_BACCE Length = 964 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 136/1022 (13%), Positives = 302/1022 (29%), Gaps = 134/1022 (13%) Query: 167 EVEAQQQKLVALNGYIAILEGK-QQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAY 225 +++ + + E + + + + + L L++ N ++ ++ Sbjct: 4 QLQELDYEHFHGPSLDSERESRGEIVLKGRLSKAILQLNPWLSDTNLAKVIRSITHIEST 63 Query: 226 HKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWP 285 +Q + +I Q + G ++T++ RP + ++ Sbjct: 64 SLMEANQKFHEMIVN-------MISVQ-QDLGRGKKNQTVKLIDFERPANNEFLVVDQF- 114 Query: 286 TGKDETGNQGFADYVLFVGLKPIAVVEAKRNNID----VPARLNESYRYSKCFDNGFLRE 341 D ++F+ P+ +VE K + + + + +RY + F Sbjct: 115 -TISNAKGNIRPDLIIFINGLPLVIVECKSPMLSPDEQIGEGVRQLHRYQNTHEQLFYYN 173 Query: 342 TLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVR 401 + S D T +K P+ + Sbjct: 174 QFMIVTSNDRAKVG-----TIGAKVQHYSEWKDPYPKT----------------VVELGV 212 Query: 402 DTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI- 460 E LL+++ + + + RY Q AV + I Sbjct: 213 SPTPQDILTAGMLTKESLLDLIRNFIVYEPV----EGRTIKKLARYQQFRAVNKAIERIL 268 Query: 461 ---VKGQQEILLAMATGTGKTRTAIAMMFRLIQ--SQRFKRILFLVDRRSLGEQALGAFE 515 K Q+ ++ G+GK+ T + + +L + + I+ + DR+ L +Q F Sbjct: 269 GAEDKTQRGGVVWHTQGSGKSLTMVYLAVKLRRIKELKNPTIIVVTDRKDLDDQITNTFR 328 Query: 516 DTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP-MPVARYDCIVVD 574 + L + + VQ + + + A +++D Sbjct: 329 RCGF--PNPQQAESVAQLRQLIQQGIGSTIMTLVQKFQEDAETKEFKNLSTAENIFVMID 386 Query: 575 EAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFG 630 E+HR T +A +A T TP T + FG Sbjct: 387 ESHRSQYGGLATTMKSAIP-----------------NACYLAFTGTPIDKEDKSTNRTFG 429 Query: 631 EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDD 690 + +YT AV DG + PI R A V +++ + D Sbjct: 430 PYIDKYTIEQAVKDGATL----PIFYEARMADLHVQGDSLDELFERQFREYSEEDRERIK 485 Query: 691 QDFEVADFNRGLVIPAFNRAVCNELTNYLD---PTGSQKTLVFCVTNAHADMVVEELRAA 747 + + + + + ++ + + K + ++ A M E L Sbjct: 486 KKYATEQ--AIISSQKRIKRIVLDMIRHYERHIQANGFKAQIVAISREAAVMYKEMLDEL 543 Query: 748 FKKKYPQLEHDAIIKITGDADK-------DARKVQTMITRFNK---ERLPNIVVTVDLLT 797 E I+ + + + + + +I RF E ++ D L Sbjct: 544 -----SNYESKVIMSVGHNDGEHLQKHHLSKEEEKDVIARFKNPMSEDKLCFLIVCDKLL 598 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLE----- 852 TG D P + + ++ L Q R R + KT I D + LE Sbjct: 599 TGFDAPIEQVMYLDKPIKEHNLL-QAIARTNRTYDK--KTYGLIVDYYGVSRFLEQALAI 655 Query: 853 -----------SVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVA 901 ++DT P + ++I+ + + + Sbjct: 656 FNKEDVQGALKNIDTEIPKLQSRHRSAMRFFDKISKDNLEACLQVLEPEDVRNEFDTAFK 715 Query: 902 KLQRIIGLATFNRDRSETIDK-----QVRRLDELCQDAAGVNFNGFASRLRE-KGPHWSA 955 + + + + + I ++R+ + G++ + ++++ H +A Sbjct: 716 RFSESMDMVMPSSKAHDYIADLKLLGKIRQAAKSRYRVDGMDISDCGEKVKQLIEEHLTA 775 Query: 956 EVFNKLPGFIARL-EKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDF---LEAF 1011 N + I L + + I + + + + P + E Sbjct: 776 VGINVVHEPIDILSNRFEKQIEETKTPEGKAAEMEHAIRHEIRVKLEENPVYYTSLKERL 835 Query: 1012 DSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSL---------RKAWK 1062 + ++QR + Q + ++ R++ + + + Q F + Sbjct: 836 EEILQRRRDRQMDIDELLEEYRNM-VNDMRNTAQKGEEQGFTREQYPFYQMLEKEMPQYD 894 Query: 1063 ETRNEDIAARLIGHIRRAAVGDALKPFEERVDHAL-TRIKGENDWSSEQLSWLDRLAQAL 1121 + + LI I + +E V + +IK + S L+ L Q L Sbjct: 895 DAEDLKALTHLITDIIQQEADIVEWTTKEDVKREMRKKIKKQLRVSPCPKEKLESLTQQL 954 Query: 1122 KE 1123 + Sbjct: 955 ID 956 >UniRef50_B5EVZ8 Type I site-specific deoxyribonuclease n=3 Tax=Proteobacteria RepID=B5EVZ8_VIBFM Length = 1028 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 151/986 (15%), Positives = 305/986 (30%), Gaps = 122/986 (12%) Query: 203 LEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLID--AQLRKAGWQA 260 L+ +L + ++ ++ + + + + R LID + Sbjct: 46 LKPRLKKSLMKINPHLPEDCIDTAIDTLLTTVPSVAHANHTFHRQLIDGIQVEYEDSEGR 105 Query: 261 DSKTLRFSKGARPEPGVNKAIAEWPTGKDETG--NQGFADYVLFVGLKPIAVVEAKRN-- 316 + + A+ ++ G + D V+F+ PI+V+E K Sbjct: 106 PKGDKVYLVDFTNQNNDWLALRQFSVDGVTNGEKDNRRPDIVVFLNGLPISVLELKSPAD 165 Query: 317 -NIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIP 375 DV N+ Y + F+ + E + Sbjct: 166 EKADVWKAYNQIQTYKNVLRDLFVFNESVIISDGTEAYIGS------------------- 206 Query: 376 FCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFA 435 T R+ +T G D DT + + + E LL+ L + Sbjct: 207 ---LTADRDRFTPWRTIDGS-RDDSEDTLALEVMVRGFFNQELLLDYLQYFISFEC---- 258 Query: 436 DNPGMSELGLRYYQEDAVRA-----VEKAIVKGQQE-ILLAMATGTGKTRTAIAMMFRLI 489 DN + + Y+Q VRA + G Q + G+GK+ + +L+ Sbjct: 259 DNEKVIKKIAGYHQFHGVRAAIESTIRATRHDGDQRCGVFWHTQGSGKSLSMGFYSAKLM 318 Query: 490 QSQ--RFKRILFLVDRRSLGEQALGAFE-DTRINGDTFNSIFDIKGLTDKFPE-DSTKIH 545 + R I+ + DR L EQ F + + +T D L + S I Sbjct: 319 AAPEMRNPTIVVVTDRNDLDEQLFETFSINAELLRETPIQAKDRHHLKELLDNRQSGGIF 378 Query: 546 VATVQSLVKRTLQSDEPMPVARYDCIVV-DEAHRGYILDKEQTEGELQFRSQLDYVSAYR 604 T+Q +S P R + +V+ DEAHR K + + + + Y R Sbjct: 379 FTTMQKFSPDEGESRYPALTERNNIVVMADEAHRSQYGLKARVDSK-TGEMKYGYAQHLR 437 Query: 605 RILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 L +A I T TP T +FG+ V Y A DG ++I + Sbjct: 438 DALP--NAGFIGFTGTPVEMEDRDTRVVFGQDVSVYDIEQAQRDGATKKLYYESRLIKLD 495 Query: 661 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD 720 + + +Q +D A + + +L + Sbjct: 496 MDKSIKEEDLDQAVDDLVAEYDEDDQSRTKAK--NAALEALVCAEDRIDRLARDLLTHFG 553 Query: 721 PTGSQ---KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI--TGDADKDARKVQ 775 K + C++ + ++LR + + + +K+ TG + + + Sbjct: 554 KREEVTLTKAMAVCISREACVQLYDKLRELKPEWHDEDPEKGCMKVIMTGTSSDPEKYQK 613 Query: 776 ---------TMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 + R + +V+ D+ TG D P + + + ++ L Q Sbjct: 614 HIHKKPIQKKIAKRIKDPDSELKLVIVCDMWLTGFDAPCLNTMYIDKPLKGHNLM-QAIA 672 Query: 826 RATRLCPEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVELQTLVNEITDSETYKI 883 R R+ +K I D + I L S + P ++L + Sbjct: 673 RVNRVFR--DKEGGLIVDYLGIAPELRSAVRNYTASGQGEPTIDLAQALEVTMTKLDVCR 730 Query: 884 TEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFA 943 G ++++ +GL + +++ +R D+ Sbjct: 731 GIMHGFDYSDY--------KTNTLGLLAKAMNHILSLEDGKKRFDKAA-----------L 771 Query: 944 SRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDT 1003 S + + + IA E L+ I + + ++ +++ + + Sbjct: 772 SLSKAFSLCSCMDEAKDIKEEIAFFETLRAAIKKTTTSKQRMSDENVQTALRQVVSESIV 831 Query: 1004 PQDFLEAFDSLVQRSPN-------------AQPALQAVINRPRDLTRKGLV--ELQEWFD 1048 D ++ F+S PN + + L + + ++ Sbjct: 832 SGDIVDVFESAGLNKPNISILDDDFLAEVEKIEHKNLAVEMLKKLIQDEIKTRTVKNAVA 891 Query: 1049 RQHFEESSLRKAWKETRNEDIAARLI--GHIRRAAVGDALKPFEERVDHALTRIKGENDW 1106 + F E LR + + RN + ++ I+ + L+ +R D D Sbjct: 892 YKTFSE-MLRNSLDKYRNRSVETSVVIEELIK---LAKELRDSADRGDDL--------DL 939 Query: 1107 SSEQLSWLDRLAQALKEKVVLDDDVF 1132 + E+L++ D L K + + Sbjct: 940 TKEELAFFDALLANESAKEAMKQEDI 965 >UniRef50_A3CUH7 Type III restriction enzyme, res subunit n=3 Tax=Methanomicrobia RepID=A3CUH7_METMJ Length = 945 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 186/1038 (17%), Positives = 355/1038 (34%), Gaps = 198/1038 (19%) Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSK-TLRFSKGARPEPGVNKAIAEWPTGKDETGNQG 295 ++L+E ++R ID L + GW ++ ++ + + ++ Sbjct: 1 MDLTELQTRKSKIDVYLAEQGWDVMNRASVIPEVDTKQSDFLARSYKTVSETLKNDLESK 60 Query: 296 FADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 + DY+L P+A++EAKR + D ++ +Y+ R+ Sbjct: 61 YVDYLLLDSLGAPLAIIEAKRTSKDPLIGQKQAEQYADDIKRQTGRDV------------ 108 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 F + +NG E IW+ D R + L ++ Sbjct: 109 ---------------------FIFLSNGYE----------IWFWD--RERYPLRLLKGFY 135 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 ++L + ++ + + R + V+ V + I KG ++ L+ MATG Sbjct: 136 AQKDLERL--RFQIQKIDPTRSIEINTRIVDRSKSIENVKRVLEHIRKGHRKGLIVMATG 193 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGA-FEDTRINGDTFNSIFDIKGL 533 TGKTR A+A++ L+Q R +++LFL DR++L +QA F + + + I Sbjct: 194 TGKTRVAMAIIDALLQENRAQKVLFLADRKALRDQAWNKGFLEFFPHEAKDKILHGIY-- 251 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEP----MPVARYDCIVVDEAHRGYILDKEQTEG 589 +++V+T+Q+ + Q D + +D I DEAHR Sbjct: 252 -----NKEKRLYVSTIQTFQEIYTQKDRHGQNLISPGEFDLIFSDEAHRSIY-------- 298 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTA 641 + +R + + DA++I LTATP T + F P Y+Y A Sbjct: 299 -----------NKWRDVFTYLDAMQIGLTATPAELVDRDTFRFFHCNDNMPTALYSYDEA 347 Query: 642 VIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRG 701 V DG L+D II + + + + +FE + + Sbjct: 348 VKDGVLVDFRK--SIIGAQTHFQIEGLHPSDLTESERNRLIEQGIDPYEINFEGTELEKK 405 Query: 702 LVIPAFNRAVCNELTN--YLDPTG--SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEH 757 + + + A+ E +D G K++ F ++ HA + E YP+ + Sbjct: 406 VAVKGTSEAIVREFMEGCQMDQAGTLPAKSIFFAISKKHARRLHEAFDDL----YPEYKG 461 Query: 758 DAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 I D + + +I F E P + ++VD+L TG+D+P +CN+VF + V S+ Sbjct: 462 RLARIIVSDDP----RAEALIHDFEHESFPRVAISVDMLDTGIDVPEVCNLVFAKPVFSK 517 Query: 818 ILYEQMKGRATRL---------CPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVEL 868 I + QM GR TR P+ +K FK+FD + + V P + Sbjct: 518 IKFWQMLGRGTRSDGACKHREWLPDGHKEYFKVFDFWNNFEYWNMNP--EGVKNEPTEAI 575 Query: 869 QTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLD 928 + + + + ++ E A ++L ++ + + R+ I + L Sbjct: 576 TSRIFFLRLKQLERLLEQGDDERAAIVRQRLEEDIRSLPMDSVTVREHEREI---AKALS 632 Query: 929 ELCQDAAGVNFNGFAS---------------RLREKGPHWSAEVFNKLPGFIARLEKLKT 973 D G++ + L G +E+L Sbjct: 633 PKLWDNVGLDPLENLKTTIMPLMRFQTGVNLKEASFTVKAERLGLAVLEGNEKEIERLAP 692 Query: 974 DINNLNDA--------PIFLDIDDEVVSVKSLYG-------------------------- 999 +I + D + DEV++ G Sbjct: 693 EIGEMVDHLPRTLNIVKEKEERLDEVLTHAFWKGLSFEDAIGLVEEIAPLMKYMSKEAHE 752 Query: 1000 -----------------DYDTPQDFLEAFDSLVQRSPNAQPALQAVIN---RPRDLTRKG 1039 + +++ AF V++ VI R +T Sbjct: 753 PIVIDMGDIIEQRTLWTLKEDAPEYVVAFREKVEKRVTELADHNPVIQKILRDDPITEAD 812 Query: 1040 LVELQEWFDRQH--FEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHAL 1097 L +L+E E L+ + + L+ IR +E++ A Sbjct: 813 LHDLEEALAEAGVNVTEEMLQISPRHPY-----GSLVEFIRSLFGLYEAPDPKEKIAEAF 867 Query: 1098 TRIK--GENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLD 1155 ++++QL ++ + K ++ D F G A + + +L Sbjct: 868 QTYMIESNKHYTADQLHFIRTIQTVFMRKRRIEMDDLFLAPFTNFGSTAPMPMFDEGDLK 927 Query: 1156 TLL---GKFSDYIWDELA 1170 + ++ A Sbjct: 928 AFIGICQGLERELFAAGA 945 >UniRef50_A1WM89 Type I site-specific deoxyribonuclease, HsdR family n=25 Tax=cellular organisms RepID=A1WM89_VEREI Length = 1070 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 145/1022 (14%), Positives = 312/1022 (30%), Gaps = 126/1022 (12%) Query: 157 QVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAK 216 + + ++ ++ ++E+ + +A N L Sbjct: 6 EAAIELALLEQLRGLGYRIEQEKDIGPDGPRPERESHDEV-VLKKRFADAVARLNPGLP- 63 Query: 217 QTEQERKAYHKEITDQAIKRTLNLSEEESRFLID----AQLRKAGWQADSKTLRFSKGAR 272 + R+ + + + L + + + D + G + T+ R Sbjct: 64 --LEARQVAMRRLMQSELPTLLEENRRLHKLMTDGVEVEYYAEDG-TLTTGTVALIDFKR 120 Query: 273 PEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNN-IDVPARLNESYRYS 331 PE A++++ + Q D V+FV P+ V+E K + A + Y Sbjct: 121 PEQNDWLAVSQFVVIAGQ--YQRRPDVVVFVNGLPLVVIELKALGNATLLAAFQQLQNYK 178 Query: 332 KCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKT 391 + F LL + +E +T Sbjct: 179 QQIAALFNTNALLVTSDGVHARVGS----------------------LSADQERFMPWRT 216 Query: 392 KSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQED 451 G + + LL++L G+ ++ Y+Q Sbjct: 217 TDGTAITPKGKP-ELPTLIEGVFAHRRLLDLLRHFTVFD----ETGSGLVKIIAGYHQFH 271 Query: 452 AVRAVEKAI-------------------------VKGQQE-ILLAMATGTGKTRTAIAMM 485 AV + KG + ++ G+GK+ + Sbjct: 272 AVMRAVDSTLRASSQWQGVQEDPRDYGWSSVKTQAKGDRRAGVIWHTQGSGKSLLMVFYA 331 Query: 486 FRLIQS--QRFKRILFLVDRRSLGEQALGAFEDTR-INGDTFNSIFDIKGLTDKFPEDST 542 +L Q ++ L DR L +Q F R T + L S Sbjct: 332 RQLAQHVAMANPTLVVLTDRNDLDDQLFATFSRCRDFIRQTPVQANSREDLQKLLMRASG 391 Query: 543 KIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSA 602 + T+Q +S +P+ ++ DEAHR + + + + Sbjct: 392 GVIFTTLQKFA----ESSQPLTERHNVVVIADEAHRSQYGFRAKLD-ARTGGVSYGFAKY 446 Query: 603 YRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIIT 658 R L H A I T TP ++T +FG + Y AV DG + I + Sbjct: 447 LRDALPH--ASFIGFTGTPIEASGVNTRAVFGNYIDIYDISRAVEDGATV----LIYYES 500 Query: 659 RNAQEGVYLSKGEQVE-RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTN 717 R A+ + + +++ + E ++ ++ E + + + ++ Sbjct: 501 RLARIELDGDERHKIDAEVDAMIEDDSEAEQERFKKEWSTVEALVGSDKRLALIAQDMVT 560 Query: 718 YLDPT---GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI--TGDADKDAR 772 + + K + C++ + EE+ + + +KI TG A A Sbjct: 561 HFEARMAALDGKAMAVCMSRHVCVRLYEEIVKLRPGWHSADDKAGALKIVMTGAASDPAE 620 Query: 773 ---------KVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 + + R R P +V+ D+ TG D P + + + ++ L Q Sbjct: 621 WQQHVGNKARRDVLAKRARDIRDPLKLVIVCDMWLTGFDAPCMHTMYVDKPMQGHGLM-Q 679 Query: 823 MKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYK 882 R R+ +K + I D + I L+S R + E Y+ Sbjct: 680 AIARVNRVFR--DKPAGLIVDYIGIAHYLKSALRQYSKSDRKNTGIDESKAVAMMMEKYE 737 Query: 883 ITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGF 942 I F +L + G + D E + A + Sbjct: 738 IVRNMYHGFDYTLDGTAQERLVMMAGAIEWILDMQ-QKSAARESSREGKKTAHRRYQDAV 796 Query: 943 ASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYD 1002 + + +++ + + + ++ + + A + + E+ +++ + Sbjct: 797 LALSKAFSLVSASDEARTIREEVGFFQAIRDALVKSSGAMGVMGQEREL-AIRQIVSRAV 855 Query: 1003 TPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWK 1062 + ++ ++ P + + ++ L E+ + +R++ +LRK Sbjct: 856 ISTEIVDILAAV----GIKSPDISILSDQ-------FLTEIAQ-MERKNLALEALRKLIN 903 Query: 1063 ETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALK 1122 + A ++ K F ER++ A+ R ++E L L LA+ ++ Sbjct: 904 DDIRSRSKANVVQ----------SKAFSERLEEAMARYHANAITTAEVLQELITLAKDIR 953 Query: 1123 EK 1124 + Sbjct: 954 AE 955 >UniRef50_Q3ADU9 Type I restriction-modification system, R subunit n=5 Tax=Bacteria RepID=Q3ADU9_CARHZ Length = 1067 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 163/979 (16%), Positives = 320/979 (32%), Gaps = 110/979 (11%) Query: 138 RGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQE--TEAQ 195 EN + ++L L ++ +Q ++ + E+ + G +E E+ Sbjct: 10 YVENPFLAQLLRLGWKVYRQNKDNPEEIKEIASFNSAFEPSFGESVKFRESFKEVVLESV 69 Query: 196 TQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL--NLSEEESRFLIDAQL 253 + L + L E + +A ++ I L N S E+R Sbjct: 70 LKESLKKINPWLMEDQINEVMRKITTPQANSFLEINREIHDLLLENTSVSENRRT----- 124 Query: 254 RKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEA 313 S T+RF PE A++++ T D VLFV P+ VVE Sbjct: 125 -----GEKSPTVRFIDFRNPENNTFLAVSQYKVNIPGTEKHIIPDIVLFVNGLPLVVVEC 179 Query: 314 KRNNI--DVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQR 371 K I + + + RYS E L + + A + + Sbjct: 180 KSPAIADPLTEAITQLMRYSNRRGVKEGNEKLFWY---NVFMIATSNQVAKYGTITSDFE 236 Query: 372 FKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQN 431 + E++ D + + + L++L + + Sbjct: 237 HFV---------EWKDPYPYALSEVNPDGV-VTSQQLLIHGMLSKQNFLDLLHTFTIFKE 286 Query: 432 QWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ----QEILLAMATGTGKTRTAIAMMFR 487 G+ ++ RY Q AV+ + K + +G+ + ++ G+GK+ T + M+ Sbjct: 287 DS---KGGVIKVVARYQQFRAVKKMVKRLKEGKTPIERGGIVWHTQGSGKSLTMMYMVRE 343 Query: 488 LIQSQRFK--RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIH 545 + F +I+F+ DR+ L +Q + T N I+ L + + Sbjct: 344 MYHQPEFGSFKIVFITDRKELEQQLRDTSKSVGF---TVNLAGSIEELKQLLKTKTPDLV 400 Query: 546 VATVQSLVKRTLQSDEP-MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYR 604 +A V +R L+ + P + + +++DEAHR + R Sbjct: 401 MAMVHKFQERDLKREFPVLNTSPNILVMIDEAHRTQY---------------KLLGANLR 445 Query: 605 RILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEG 664 + L +AV+IA T TP T Q FG+ + +Y+ R AV DG ++ ++ + + Sbjct: 446 KALP--NAVRIAFTGTPIDKTEQEFGQYIDKYSIRQAVDDGVTVEIVYEGRVHSAELSDE 503 Query: 665 VYLSKGEQVERISPQGEVINDTLEDDQDFEVAD-FNRGLVIPAFNRAVCNELTNYLDPTG 723 + + E L + VI + + + ++ P G Sbjct: 504 EAANARFEDVFRDADQETKRQIL---GKYTWKAYLEAEEVIRDKAKDMIDHYVTHIFPNG 560 Query: 724 SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEH--------------DAIIKITGDADK 769 K V V+ A + L A K+K +LE + I+G + Sbjct: 561 -FKAQVVTVSRLAAVRYKKALEDALKEKIAELEKSQNQKVDLKTLKKLKVGVVISGKQND 619 Query: 770 DARKV--------QTMITRFNK----------ERLPNIVVTVDLLTTGVDIPSICNIVFL 811 +A + +I F I+V +L TG D P + Sbjct: 620 EAIYQPYTNPVEHEKIIQSFRLPFGKVNESGISGDVGILVVQSMLITGFDAPIEQVMYLD 679 Query: 812 RKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTL 871 ++ L Q R R+ NK+ + D V + LE + ++ + Sbjct: 680 NVIKGHNLL-QAIARVNRVY--KNKSCGYVVDYVGVLKHLEEALAIYADEDLAEISKVVI 736 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETI---DKQVRRLD 928 + + + FA+ + +++ I L + R+E I R +D Sbjct: 737 NKAKSIANLHYTHRQIEEFFAKKGLKDWRSQVDDCIDLLVDEQIRNEFIMLVRNFNRAMD 796 Query: 929 ELCQDAAGVNFNGFASRL-------REKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDA 981 + DA + + L R + + + +E+ Sbjct: 797 AVLPDAEALKYLTDLKILSFIKEAARNRYRDSKLSISDASRKIREIVEEYIVAKGIDPKI 856 Query: 982 PIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPAL-QAVINRPRDLTRKGL 1040 P +DD+ ++ Q+ + A + P L + +R + L + Sbjct: 857 PPTPLLDDKFLNKLKGKPAKVKAQELITAIKEHIVDHFEEDPELYERFSDRLKRLLEEYH 916 Query: 1041 VELQEWFDRQHFEESSLRK 1059 + + + ++K Sbjct: 917 EKWEILAEELERFREEIQK 935 >UniRef50_B5ENW6 Type I site-specific deoxyribonuclease, HsdR family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ENW6_ACIF5 Length = 1022 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 155/1022 (15%), Positives = 306/1022 (29%), Gaps = 114/1022 (11%) Query: 173 QKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQ 232 ++L + + + E LE + + ++ R + + Sbjct: 18 KELGYAYAFGPDIGPDSNQKERADYENPLLLERLRTAIHRLNPEAPKEIRDEALRHVQAI 77 Query: 233 AIKRTLNLSEEESRFLIDAQLRK--AGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDE 290 A+ + + + L++ + +R PE + ++ Sbjct: 78 AVGGLMTENSLFQQMLVEGVRVAHMVDGEERGSIVRLIDYDHPEKNDLLVVNQYTVIH-- 135 Query: 291 TGNQGFADYVLFVGLKPIAVVEAKR---NNIDVPARLNESYRYSKCFDNGFLRETLLEHY 347 AD V+FV P+ + E K N N+ Y N +L Sbjct: 136 NRINRRADLVVFVNGLPLGLFELKNMADANATTRRAWNQLQTYQADIPNLMAYNAILVIS 195 Query: 348 SPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMS 407 + E KT G D R + Sbjct: 196 DGLKAAVGCLGAP----------------------YERFLPWKTIDGQELMD-RGDDPLR 232 Query: 408 KALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVE------KAIV 461 + P L+++ + D +S+ Y+Q A + I Sbjct: 233 FLIHGVFEPVRFLDLIRYFIAISD----DGRKLSKKIAAYHQFHAAQKALLTTLASAGIG 288 Query: 462 KGQQEILLAMATGTGKTRTAIAMMFRLIQSQ--RFKRILFLVDRRSLGEQALGAFED-TR 518 ++ ++ G+GK+ T + LIQ IL L DR +L Q F + Sbjct: 289 GDRRGGVVWHTQGSGKSLTMLFFAGMLIQHPALENPTILMLTDRTNLDTQLFDTFAAGKQ 348 Query: 519 INGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP---MPVARYDCIVVDE 575 + + L + S + +T+Q K + + + ++VDE Sbjct: 349 LLRQDPQQADSVSDLRELLQRASGGVLFSTIQKFQKDRDEPLGKHPVLSERKNIIVMVDE 408 Query: 576 AHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGE 631 A R Y + R L +A +A T TP T +FG+ Sbjct: 409 AQRSQY------------EILKGYAANLRAALP--NATFVAFTGTPLELDDRDTRVVFGD 454 Query: 632 PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ 691 + Y + AV DG + +++ N E E I+ E N + Sbjct: 455 YIDIYDIQRAVEDGATVPIYYESRLVRLNLPEDQRPLIDSTFEEITEDDEQENKERLKTR 514 Query: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS---QKTLVFCVTNAHADMVVEELRAAF 748 A + P + +L ++ + S K ++ ++ A + + + Sbjct: 515 ---WAQLEALVGAPKRVEQIAADLLDHWEKRKSILSGKAMIVAMSRRIAVELYDAIVRIH 571 Query: 749 KKKYPQLE--HDAIIKITGDADKDARKV---------QTMITRFNKERLP-NIVVTVDLL 796 + + +TG A + + R P IV+ D+ Sbjct: 572 PDWRGDDDTQGRIKVVMTGSASDPIEWKPHIRSKAGNEAIADRLKDPDDPLEIVIVRDMW 631 Query: 797 TTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT 856 TG D P++ + + +R L Q R R+ NK+ + D + I L++ Sbjct: 632 LTGFDAPALNTLYVDKPMRGHTLM-QAIARVNRVF--TNKSGGLVVDYIGIAQDLKNAIA 688 Query: 857 MRPVV---VRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFN 913 P +QT + + + G + ++ + K+ + F Sbjct: 689 TYTRSGGKGNPAETVQTAIKVLLEKLDICRGIFHGCDYQDYLTDDGSEKVATLRKATEFI 748 Query: 914 RDRSETIDKQVRRL----DELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLE 969 + T + RR L + A + R R + + + + E Sbjct: 749 LSQELTEEGVKRRFRNATSGLKKAATLAAGDDIVERCRTEIIFFLS--VRATLDKSSEAE 806 Query: 970 KLKTDINNLNDAPIFLDIDDE-VVSVKSLYGDYDTPQDFL-EAFDSLVQRSPNAQPALQA 1027 L + I I E VV + ++ G + L + F ++ P AL+ Sbjct: 807 SLVEEQEYAIRQLIDQSIAPEGVVDLYAVAGLPKSEISLLSDEFIHQIEAMPEKNLALEM 866 Query: 1028 VINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAA-----RLIGHIR--RA 1080 + +D R E + + L +A ++ N + LI + +A Sbjct: 867 LRRLLQDKVR---KEGKGNLIQSKAFSEKLEEALRKYHNRSVDTVEVMQELIELAKALQA 923 Query: 1081 AVGDALKPFEERVDHALTRIKGENDWSSEQL---SWLDRLAQA----LKEKVVLDDDVFK 1133 + + + A ND S+ Q L +A+ +++ +D + + Sbjct: 924 LDQRHAELGLSKDEAAFYDALATND-SAVQAMGDEALKMIAKEVADTVRQNTRIDWSIRE 982 Query: 1134 TG 1135 Sbjct: 983 QA 984 >UniRef50_Q2S3K0 HsdR n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3K0_SALRD Length = 1049 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 155/1032 (15%), Positives = 309/1032 (29%), Gaps = 119/1032 (11%) Query: 138 RGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQ 197 + E L E E + E + + + Sbjct: 3 DQLQIALLEEQPLGDPDENLFEETTIERLENLGYRSVHGRDLRDPETFPDTEVVHRPTLR 62 Query: 198 ARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAG 257 A L E A QT ++ R + + + G Sbjct: 63 RFFRAQYPFLDETALTQAVQTVASPDGVGLAQRNKEAHRLI------TEGFDLPYEKDDG 116 Query: 258 WQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAK--- 314 + + RP + + D D +++V P+ V E K Sbjct: 117 -TEAYEHVYPIDWERPGENDFWVVQQLSIHGDND---RRPDLIIYVNGLPLVVFELKNPY 172 Query: 315 RNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKI 374 R ++DV N+ Y + F E + V Sbjct: 173 REDVDVENAFNQLQHYKQELGRLFSFNAFCVLSDGTETLQGV------------------ 214 Query: 375 PFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWF 434 + RE+ + G D R ++ + E LL + + Sbjct: 215 ----HSASREWFKPWMSADGETIADDRRQ-SIDTLIEGLFPKERLLSYVRNFIV----HE 265 Query: 435 ADNPGMSELGLRYYQEDAVRAVEKAIVK------GQQEILLAMATGTGKTRTAIAMMFRL 488 G+ + G Y+Q VR + ++ Q+ ++ G GK+ + + ++ L Sbjct: 266 TVGGGIRKKGALYHQFFGVRRAVEETLRATGPGGDQKIGVIWHTQGAGKSLSMVFLVGIL 325 Query: 489 IQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVAT 548 + IL VDR L EQ AF + + + I+ L + + ++ T Sbjct: 326 RRRLGNPTILIEVDRNDLDEQLYDAFVAAKPLVGSVHQAEGIEDLRQRLQTEGGEVVFTT 385 Query: 549 VQSLVKRTLQSDEPMPVARYDCIVV-DEAHRGYILDKEQTEGELQFRSQ---LDYVSAYR 604 ++ + +++ P R D +V+ DEAHR + + + + Y R Sbjct: 386 IEKFQLKGEETEHPQLTGRDDVVVIADEAHRTQYGFEGEVRYDEETGEHFTAYGYAKYLR 445 Query: 605 RILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ-IITR 659 L +A I T TP T +FG+ ++ Y + A DG ++ + I + Sbjct: 446 EALP--NASFIGFTGTPIAEDDRDTTAVFGDLIHSYDMKQAKKDGAVVGIQYEPRLIELK 503 Query: 660 NAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL 719 E + E E + E + + +L + Sbjct: 504 LTNENIDEELSEIAEGEDVEVEKQK----------WSAMEEAAGTDERQSQLAEDLIEHF 553 Query: 720 DPT---GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ--LEHDAIIKITGDADKD---- 770 K ++ ++ + + E + + + + +TG+ +D Sbjct: 554 QKRCQSIEGKGMIVGMSRENCVGLYEAIVDQRPSWHDPALDQGKIKVVMTGNISEDPPEW 613 Query: 771 --------ARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 R+ + RF + + + D+ TG +IP + + + ++ L Sbjct: 614 NERGHITTKRQRGQLKERFKDPDDELKLAIVCDMWLTGTNIPCLHTLYIDKPMKGHNLM- 672 Query: 822 QMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD--TMRPVVVRPKVELQT--------- 870 Q R R+ +K + + D + I + L+ P EL+ Sbjct: 673 QAIARVNRVFR--DKPAGLVVDYIGIGTELKKATKRYTDQGFDEPTEELEEAAFGQFEEA 730 Query: 871 --LVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLD 928 V E T K A R ++ E V +L RD +K++R+ Sbjct: 731 LSAVRETLPGGTDKDDIAGWRDLSKIDFEDFVGRLYDFYLETDDRRDDFLKKEKRLRKAH 790 Query: 929 ELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDID 988 L Q +A + + K G ++ + + D Sbjct: 791 SLIQHRDE--VEDYADEVAFYQFVRTQLKRTKEGGGGDGRDEDEDRAAAIRDLVERSIDA 848 Query: 989 DEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLV-ELQEWF 1047 +E V + G L+ + ++ + I L + + +E Sbjct: 849 EEAVDIYEAAGLDKPDISILD--EEFLEEFKSGDGRENLRIKVLEKLLQDEIQVRKRENL 906 Query: 1048 DRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTR--IKGEND 1105 ++ + L + ++ R I A + +K E A+ E D Sbjct: 907 EKYRSLQEILEETLEKYRRNAITA-----------AEVMKELVEIKKEAMEEDDRMEEYD 955 Query: 1106 WSSEQLSWLDRL 1117 S+E++++LD + Sbjct: 956 LSNEEIAFLDAI 967 >UniRef50_D0B7P6 HsdR protein n=35 Tax=Brucella RepID=D0B7P6_BRUME Length = 989 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 157/1023 (15%), Positives = 299/1023 (29%), Gaps = 107/1023 (10%) Query: 148 LTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQE--TEAQTQARLAALEA 205 +QLE++ E+ T K ++ + +G E + L L Sbjct: 2 NETSEQLEREWVEEPATDLLRVLFDYKPLSPEDVRRLRDGLATEPVLTLRLAECLTRLNP 61 Query: 206 QLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSE----EESRFLIDAQLRKAGWQAD 261 L + + +T + +E + + G + Sbjct: 62 WLD----------DHGVRRAVAAVTRVTAVDVMEANESAYTALTYGVTAPHTE--GGRRQ 109 Query: 262 SKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNI--D 319 + +RF P + + D V++V P+A +E K ++ Sbjct: 110 DRNVRFFDFDDPSANTFEFARQVAIKGA--RQDIIPDIVVYVNGLPLAAIECKSPSLADP 167 Query: 320 VPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA--VPEYETSWQDTSGKQRFKIPFC 377 + + + RY + L L + + A V +Y T+ +K P+ Sbjct: 168 MGEAIRQFRRYENRDEFAGLGAPRLFETAQISIALARDVAKYGTTLTPARQWAEWKDPY- 226 Query: 378 YSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADN 437 T + + R L P LL+++ + + Sbjct: 227 -----------PLTLDALAAQLGRTPTGQDILLAGLLAPANLLDLIRNFVVFETI----G 271 Query: 438 PGMSELGLRYYQEDAVRAVEKAIVK----GQQEILLAMATGTGKTRTAIAMMFRLIQSQR 493 + RY Q AV + I ++ ++ G+GK+ T + + +L + Sbjct: 272 GRRIKKLARYQQFVAVGKAIERIRTAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPE 331 Query: 494 F--KRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQS 551 I+ + DR L +Q G F+ + L + + TV Sbjct: 332 AENPTIVIVTDRTDLDDQITGQFQRSGF--ANPMQAESGDSLRKALSGGAGTTVLTTVHK 389 Query: 552 LVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD 611 + + AR ++VDEAHR + Sbjct: 390 FHSAVPKRSSVISKARNVFVMVDEAHRTQYGALAARMRAGLP-----------------N 432 Query: 612 AVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYL 667 A IA T TP T + FG+ ++RY AV DG + PI R+A+ + Sbjct: 433 ACMIAFTGTPIDKKDRSTREAFGDYLHRYLIDQAVKDGATV----PIYYEMRDARIRIDG 488 Query: 668 SKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT---GS 724 E+ E + E+ D + + + P A+ ++ ++ T Sbjct: 489 RDFER-EVRAAFPELSEDEIAKLRRGTGLQ-EKLAGAPVRVEAIAQDILSHYRSTIEPNG 546 Query: 725 QKTLVFCVTNAHADMVVEELRAAFKKK---YPQLEHDAIIKITGDADKDARKVQTMITRF 781 K + V+ A VE L + ++ ++ R + I+RF Sbjct: 547 FKAQIVTVSRDVAVTYVEALERLGAPECALIMSASNNDSARLQAR-HLSKRDRDSKISRF 605 Query: 782 NKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK 840 K P I+V D+L TG D P + +R L Q R R KT Sbjct: 606 KKRDDPLKILVVCDMLLTGFDAPIEQVLYLDAPLREHTLL-QAIARVNRTAD--GKTYGL 662 Query: 841 IFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLV 900 + D + M L+ L +I E+ H ++ Sbjct: 663 VVDYWGDNRRIADALDMFSDEDGIASALRPLSEKIQLLESRHRAAIRLFEGISHQNDTAC 722 Query: 901 AKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNG--FASRLREKGPHWSAEV- 957 +L R + + + + + + + SR+R E Sbjct: 723 VELLRQDDIRAKFELDFLRFAEAMDMVLPNPKALEDPYPSDLKWLSRIRVLARRAYHEEP 782 Query: 958 --FNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVS--VKSLYGDYDTPQDFLEAFDS 1013 + + + + + DI D ++SL + A Sbjct: 783 FDPKDYGAKVGEIITSHLFVTGVEQLLVKFDILDPAFRPHLESLRSSDTKAAEIEHAIRQ 842 Query: 1014 LVQRSPNAQP--------ALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLR--KAWKE 1063 + + P L+ ++N R+ L + + + + +R A + Sbjct: 843 EIHVHRDENPTAYASLWEQLERIVNDRREARVSAASALTQ-LEAMVGQAADIRSGAASRS 901 Query: 1064 TRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDW---SSEQLSWLDRLAQA 1120 AA ++ I + AL DW Q + + Sbjct: 902 DGLNGTAAAILPFIDNDLPDAERSRSAAGITKALEEYAEVVDWQHKEDVQRQMRRSIKEQ 961 Query: 1121 LKE 1123 L+ Sbjct: 962 LRS 964 >UniRef50_A5UR94 Type III restriction enzyme, res subunit n=5 Tax=Bacteria RepID=A5UR94_ROSS1 Length = 899 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 203/1008 (20%), Positives = 360/1008 (35%), Gaps = 189/1008 (18%) Query: 238 LNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 + +E ++R L+D L +AGW T RP+ G+ E Sbjct: 1 MPRNESDTRAQLVDPLLNRAGWTRSQVTREHY--YRPDWQYTPGRVILRGGRVEREKPRV 58 Query: 297 ADYVL-FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 DY+L + PIAVVEAK ++ A L ++ RY++ Sbjct: 59 VDYLLRYTEAFPIAVVEAKAEDLPAVAGLEQAKRYAREN--------------------- 97 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 + F Y+TNG E + + ++ L E+ Sbjct: 98 -----------------NLMFAYATNGHEII------------EWDGFTDTTRELKEFPS 128 Query: 416 PEELLEM----------------LGSEPQKQNQWFADNPGMSEL-------------GLR 446 P+EL + N A + L R Sbjct: 129 PDELWRRWELNTGVHSPKAAGRTIAELRPLYNAAVAAARQRNPLLHPYAPSSLTRGSEPR 188 Query: 447 YYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQR-------FKRILF 499 Y+QE A+R +++GQ+ ILL MATGTGKT TA+ ++++L++S +ILF Sbjct: 189 YFQEAAIRETLVRVMRGQKRILLTMATGTGKTFTAMQIVWKLVKSGWLHQQKGRAGKILF 248 Query: 500 LVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL---VKRT 556 L DR L QA AF + + D + ++ Q+L R Sbjct: 249 LADREVLRNQAYNAFSPFASDHGDPRFMLD----GKRRLSLQYDLYFGIYQTLWATDPRG 304 Query: 557 LQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKI 615 + E P +D ++VDEAHR ++ ILDHF A+ + Sbjct: 305 KRLFEQFPHDFFDVVIVDEAHRSGFG-------------------TWKEILDHFESAIHL 345 Query: 616 ALTATPAL----HTVQIF--GEP-----------------VYRYTYRTAVIDGFLIDQDP 652 +TATP T F EP Y Y+ + DGFL Sbjct: 346 GMTATPRQDENVDTYAYFCAEEPAIPLDPQDPSKGVLHQAAYTYSLSQGIEDGFLATYKV 405 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC 712 +++T ++G+++S+ ++ + + +++ +F R + +P + Sbjct: 406 H-RVLTSIDKDGLHISRV----LEQGAEVIVPEDAKVREEYYTPNFEREIRLPDRTHTLV 460 Query: 713 NELTNYLDPTGS-QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 L L G KT+VFCV HA V L F L HD + I + + Sbjct: 461 KHLAKLLRQFGPLHKTMVFCVDVEHAREVARLLNNEFASLG--LGHDYAVPIVSE---EG 515 Query: 772 RKVQTMITRFNKE--RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 + Q + +F + P + T +LL+TGVD+P+ NIVF++ + S IL++Q+ GR +R Sbjct: 516 EQAQRWLNQFQDSDRKTPVVATTAELLSTGVDVPACRNIVFMKTISSPILFKQIIGRGSR 575 Query: 830 LCPEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVELQTLVNEITDSETYKITEAD 887 L P K F+I D + L+ RPV V P QT + A Sbjct: 576 LDPATGKLWFRIIDYTNATRLLDPRWDCPTRPVQVAPDPNAQTGI-------------AQ 622 Query: 888 GRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLR 947 G S + ++ R T + R + L + +A R Sbjct: 623 GTVRLAKSSNVIQGASVAVMAGPNDQRGPILTDENGQYRFENLPVGEISIVV--YAPRFN 680 Query: 948 EKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDF 1007 + H + + + ++ + + + I +E + + + T + + Sbjct: 681 RQQKHINTQDSTPVTLDFELSPIQQSGRQEIVVKNLQVTIAEEATFLVAGLNEPLTLEQY 740 Query: 1008 LEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKA--WKETR 1065 ++ ++ + + ++ R+ K + Q+ L + ++T Sbjct: 741 VDYSRE---KTRALISSWEKLVQIWRE--EKQRRQAQDELQHVSVYPDVLAEVLDIRQTD 795 Query: 1066 NEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKG-ENDWSSEQLSWLDRLAQALKEK 1124 D+ A I R + ++R L + + +Q ++ L + + Sbjct: 796 PFDVLA-YIAFGRH-----PILTRDQRAQAFLQQHADWLKAFPDQQRRVIEALLEQYRLS 849 Query: 1125 VV---LDDDVFKTGNFHRRGGKAMLQRTFDD--NLDTLLGKFSDYIWD 1167 V ++ VF+ F GG + + F L + + ++ Sbjct: 850 GVEEMVNPRVFRLPAFKPLGGLKGVSQQFGGGEALRQTVMELQRRLYS 897 >UniRef50_A6L7V1 Type I restriction enzyme EcoKI R protein n=11 Tax=Bacteroides RepID=A6L7V1_BACV8 Length = 900 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 195/989 (19%), Positives = 351/989 (35%), Gaps = 169/989 (17%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 EE++R ID AGW+ ++ + ADY Sbjct: 3 PEEKARIKIDQWFADAGWKVVNREDYEPTCTA-----------VAIREGLLKGNLEADYF 51 Query: 301 LFVGLKPIAVVEAKRNNIDV--PARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 LF+ K + V+EAKR D ++ Y++ N + Sbjct: 52 LFINGKAVGVLEAKREETDAFASEVCEQAALYARSVPNIYQAYQ---------------- 95 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 +PF +++NG+E ++ D R+ + + + P E Sbjct: 96 -------------KPLPFIFTSNGKE----------LYCCDFREQDSCFRQIMNIPTPHE 132 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 L++ LG FA P + + GLR Q +AV +EK+ GQ L+ +ATG GKT Sbjct: 133 LVKRLG-----IEDAFAGLPTLKKKGLRDCQYEAVTELEKSFRAGQNRALMVLATGVGKT 187 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI--NGDTFNSIFDIKGLTDK 536 TA +R++ +R+LFLVDR +LG+QA G F R+ NG+ FN+IF + L Sbjct: 188 YTACLAAYRMLSYTPMRRVLFLVDRNNLGKQAEGEFGTFRLTENGEAFNTIFTVNRLRSS 247 Query: 537 FPEDSTKIHVATVQ---------SLVKRTLQSDEP-----------MPVARYDCIVVDEA 576 + + ++T+Q ++ +EP +P +D I++DE Sbjct: 248 SIPSDSNVVISTIQRLFSFLKGETIEDNDDDENEPIEEVTLPPNPNLPHDYFDMIIIDEC 307 Query: 577 HRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALHTVQIF-GEPVY 634 HR +R++L++FD A + LTATP T+ F + Sbjct: 308 HRSIYG-------------------NWRKVLEYFDTARLVGLTATPIPETMAFFNNNCIV 348 Query: 635 RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQV-ERISPQGEVINDTLEDDQDF 693 YT +++DG +D +I T+ + G + +GE+ E GEV + ++ + + Sbjct: 349 NYTLEKSIVDGVNVDCRV-YRIKTQVTETGGAILEGEKFKEETRYTGEVKIVSSKETKIY 407 Query: 694 EVADFNRGLVIPAFNRAVCNELTN--YLDPTGS----------QKTLVFCVTNAHADMVV 741 + NR ++ PA + V + + Y + KTL+F + AHA +V Sbjct: 408 TNKELNRSIINPAQIKLVLSTYRDVVYTELFNDPQREPNMDFLPKTLIFALNEAHATNIV 467 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVD 801 + + F + + + KIT A +I +F ++ I VT L+ TG D Sbjct: 468 QIAKEVFGR----TDDRFVQKITYSAGDS----NELIRQFRNDKDFRIAVTCTLVATGTD 519 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLC----------PEVNKTSFKIFDCVDIYSTL 851 + + ++F+R V S LY QMKGR R +K F + D V + Sbjct: 520 VKPLEVVMFMRDVESLPLYIQMKGRGVRTIGDEQLRNVTPNAFSKDCFYLVDAVGVTEHA 579 Query: 852 ESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLAT 911 ++V + + L+ L+ I+ + + ++ K Sbjct: 580 QTVAPIDDAPTTKTITLKELLERISHGYIPD----EYLKRLAATLARIYNKADDPQRKEF 635 Query: 912 FNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKL 971 + + R D L + + + L Sbjct: 636 VRLSHDDMKELSARIYDALEKGILPPFVS---TDEPNNERKGLVAPLANHADARKYL--- 689 Query: 972 KTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINR 1031 I + +D ++S + ++ EAF+ ++ + AL+ + N Sbjct: 690 --LILAAGFVNTLMPGEDTLISKGFSI---EEAKNTTEAFEDFCKKYYDEIEALRIIYNN 744 Query: 1032 PRD-LTRKGLVELQEWF--DRQHFEESSLRKAWK-----------ETRNEDIAARLIGHI 1077 + +T L +L+ HF L ++ D +I + Sbjct: 745 EGEPITYSMLKDLENRLKMANNHFTSKQLWNSYAIVNPKVVRRSITKEESDALTNIIQLV 804 Query: 1078 RRAAVG-DALKPFEERVDHALTRIK--GENDWSSEQLSWLDRLAQALKEKVVLDDDVFKT 1134 R A + L + + + +Q + R+ + + Sbjct: 805 RFAFHQIERLDSVVTTSKQFFNLWLGQNQREITDKQREVISRIVDYIASNGACTIRDIRE 864 Query: 1135 GNFHRRGGKAMLQRTFDD--NLDTLLGKF 1161 A + R F + D L Sbjct: 865 ---DDATHAAQMIRAFGNMQKADEALHSL 890 >UniRef50_A4CWB4 Type I site-specific deoxyribonuclease HsdR n=3 Tax=root RepID=A4CWB4_SYNPV Length = 990 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 156/1047 (14%), Positives = 317/1047 (30%), Gaps = 123/1047 (11%) Query: 159 REKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQ- 217 R+ + A + + L+G E + + + LE + N +++ Sbjct: 6 RQLVEAPALEQLKGLGWQHLDGTTLHPEQTDKRSSPKDVLLTPNLEQAIQRINPWISEDN 65 Query: 218 TEQERKAYHKEITDQAIKRTLNLSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPG 276 + + T ++ E +++ +D L G +TL+ PE Sbjct: 66 LRKVVREVTLIQTSTLMEANQWFWERLTQYFSVDQDL---GSGRRGQTLKLIDFDHPENN 122 Query: 277 VNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNID--VPARLNESYRYSKCF 334 + ++ D LFV P+ V+E K + + +N+ RY+ Sbjct: 123 EFLCVDQFKVQGPN--QNIIPDITLFVNGMPLGVIECKSPFVTDPMAEGINQLRRYANLR 180 Query: 335 DNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSG 394 + G + + + +S EY K Sbjct: 181 NPGDSEGCEKLFHYNQVMISTHRDGARVGTISSPV--------------EYYLEWKDPYP 226 Query: 395 IWYRDV-RDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAV 453 + +D+ + P+ L+++ + + D+ + + RY Q AV Sbjct: 227 LESKDLGESPTAQQLLIQGLLTPKNFLDIVQNFTIYEP----DSGRLIKKIARYQQFRAV 282 Query: 454 RAVEKAIV----KGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK--RILFLVDRRSLG 507 + + + + ++ ++ G+GK+ T + + ++ + + +++FL DR L Sbjct: 283 QKTIERLKAPGDRKRKGGVIWHTQGSGKSLTMVFLTQKIRRDPLLRDYKLVFLTDRTQLD 342 Query: 508 EQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVAR 567 EQ F G++ + + L + +D++ + AT+Q L + + + Sbjct: 343 EQLTATFRRA--QGESVLNAKSVGHLKELLAKDASDLVTATIQKLQEDEDFGFACLNDSD 400 Query: 568 YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPAL---H 624 ++ DEAHR +A KIA T TP + Sbjct: 401 RIIVLADEAHRTQYGTLGSGINAALP-----------------NAPKIAFTGTPLIANQK 443 Query: 625 TVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN 684 T FG + YT AV DG R A+ V + + Q + Sbjct: 444 TAGEFGSYIDTYTIEQAVADGATTQIL----YEGREAETKVTGDSLDALFDRYFQDKSPE 499 Query: 685 DTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT---GSQKTLVFCVTNAHADMVV 741 + + + L P V +L + T K +V + A Sbjct: 500 EKEAIKKKYGTE--RAVLEAPQRIEWVALDLVEHYRKTILPNGFKAMVVTASREAAVTYK 557 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDAR--------KVQTMITRFNK---ERLPNIV 790 E+L A ++ + I+GD + R + + F K E +I+ Sbjct: 558 EKLDAIPNA------PESAVIISGDHNDKQRIAKWTNPADHKAAVENFKKPISEHPLSIL 611 Query: 791 VTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST 850 + D+L TG D P + RK+ L Q R R + NK S I D + Sbjct: 612 IVKDMLLTGFDAPICQVMYLDRKLTDHTLL-QAIARVNRT--KANKFSGYIVDYFGLTDY 668 Query: 851 LESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLA 910 L + L N + + + + Q + + Sbjct: 669 LAEALEVFSNTDVQGA----LKNLKDEIPKLQAAHTRVKQHLKGVDLQDIDACIAALADE 724 Query: 911 TFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEK 970 + ++++ + DAA F L + ++ + EK Sbjct: 725 LKRQQFEADFRTFAKQVEIVLPDAAANPFLADLKSLGKVVIGCRNRYRDEQLDIVGCGEK 784 Query: 971 LKTDINNLND--------APIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQ 1022 ++ I P L + + + D + A + ++ + Sbjct: 785 VRDLIEEHVRATGVDPRVPPTKLFDVEFEQVLAAQTNDRAKASEVENAIKAHIKVKLDED 844 Query: 1023 PA-LQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAA 1081 P Q++ R +++ +K +E + R ++ + + L A Sbjct: 845 PEYYQSLSLRLQEIIQKCENRWEELVQQLLL----FRDGMEQEKTQQ-DTDLGLSDEEGA 899 Query: 1082 VGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRG 1141 L + + LD + + E F Sbjct: 900 FYRVL------MKEVTEAVGDGAMDEETHQQVLDLTKELVAE-------------FQEAT 940 Query: 1142 GKAMLQRTFDDNLDTLLGKFSDYIWDE 1168 + DD + T+ + I D Sbjct: 941 QIVGFFQK-DDEMRTIKRQIKRSILDR 966 >UniRef50_Q3JA72 Type I site-specific deoxyribonuclease HsdR n=28 Tax=cellular organisms RepID=Q3JA72_NITOC Length = 1068 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 163/1058 (15%), Positives = 317/1058 (29%), Gaps = 138/1058 (13%) Query: 167 EVEAQQQKLVALNGYIAI----LEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQER 222 E + +QQ L + + + LA LEA + N L + ++ Sbjct: 3 EEQLEQQCLAWFAEGGWELAHGSDLAPGRADYRQVWLLADLEAAIRRINPHLPESCIEQV 62 Query: 223 KAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAG-------WQADSKTLRFSKGARP-- 273 A + T+ + R L++ + W+ R K Sbjct: 63 VAV---VGKPESLDTVVSNRAFHRLLLEGVPVEYKTLSSLSPWERAGVREREEKIVHDRA 119 Query: 274 ------EPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN---NIDVPARL 324 + N+ A + D + F+ P+AV+E K N+D+ Sbjct: 120 LLIDFDDLNANRFRAINQFTLLGSKQLRRPDIICFINGLPLAVLELKSPHAENVDIWDAF 179 Query: 325 NESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGRE 384 ++ Y F+ L Y + Q +P+ Sbjct: 180 HQLQTYKDEIPELFVFNEALVISDG---------YHARVGSLTANQERFMPW-------- 222 Query: 385 YRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELG 444 T+K + D + + + + E L+ L + D+ +S+ Sbjct: 223 --RTLKHEDDKPLLDWQ----LETLVRGFFDRELFLDYLRYFVIFE----TDSGRLSKKI 272 Query: 445 LRYYQEDAVRAVEKAIV----------KGQQE--------------ILLAMATGTGKTRT 480 Y+Q AVR KA V G++ ++ G+GK+ + Sbjct: 273 AGYHQFHAVREAVKATVIAAQEPRQRWAGEKRATYADDLVPGSKKAGVVWHTQGSGKSLS 332 Query: 481 AIAMMFRLIQSQ--RFKRILFLVDRRSLGEQALGAFEDT-RINGDTFNSIFDIKGLTDKF 537 +L+Q ++ + DR L Q F + D L Sbjct: 333 MCCYAGKLLQQPEMNNPTLMVVTDRNDLDGQLFATFSAAKELLKQEPVQAEDRDTLRRLL 392 Query: 538 PE-DSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVV-DEAHRGYILDKEQTEGELQFRS 595 E S I TVQ ++D P+ R++ +V+ DEAHR K + + ++ Sbjct: 393 AERASGGIIFTTVQKFALLDGENDHPILNDRHNIVVISDEAHRSQYGLKATLKKDGRY-- 450 Query: 596 QLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQD 651 Y R L +A I T TP T +FG+ V Y + AV DG + Sbjct: 451 TFGYAKHMRDALP--NASFIGFTGTPIANEDKDTRAVFGDYVSIYDIQDAVDDGATVPIY 508 Query: 652 PPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAV 711 ++ + + +QVE + E + + E + + + + V Sbjct: 509 YESRLAKLDINRELIEKLSDQVEAVVEDEEDLGQREKTKG--EWSRLEKLVGSGPRLKQV 566 Query: 712 CNELTNYLDPTGS---QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDAD 768 +L + + K ++ ++ + E+ A + IKI Sbjct: 567 AADLVRHFEIRSQSMDGKAMIVAMSREICVHLYNEIVALRPDWHDPDPEKGAIKIVMTGS 626 Query: 769 KDARKV-----------QTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRS 816 R + + + RF +V+ D+ TG D P + + ++ Sbjct: 627 ASDRPLLQPHLYNQQTKKRLEKRFKDIYDPLKLVIVRDMWLTGFDAPCCHTMYVDKPMKG 686 Query: 817 RILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVV---VRPKVELQTLVN 873 L Q R R+ NK + D + I + L+ P + Sbjct: 687 HNLM-QAIARVNRVF--KNKPGGLVVDYIGIANALKQALKTYTDAKGKGEPTHSAEEAFA 743 Query: 874 EITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQD 933 + + I ++ + + + L + R LD + Sbjct: 744 VLL-EKLDIIHGLFAKTPQNAGFDYSSFEHEATRLLIPTANYILSLEGGKKRFLDTILAV 802 Query: 934 AAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVS 993 + G R H + + + + ++ + I D + Sbjct: 803 NMAYSLCGTLEEARAY--HKEVAFLSAVKAALTKHTRVDKKLTQEEKNSALKQILDNALV 860 Query: 994 VKSLYGDY-----DTPQDFL--EAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEW 1046 + + + D P L E F V+R P A++ + +D + + + Sbjct: 861 AEGVTDVFALCGLDKPNIGLLSEEFLEDVRRMPYKNFAVELLEKLLKDNIKA---KTRNN 917 Query: 1047 FDRQHFEESSLRKAWKETRNE-----DIAARLIGHIRRAAVGDA------LKPFEERVDH 1095 ++ L++ ++ N + LI ++ L P E Sbjct: 918 VVQEKKYADRLQETLRQYNNRGIETAQVIEELIAMAKQFQAELERDEALGLNPDEVAFYD 977 Query: 1096 ALTRIKGE-NDWSSEQLSWLD-RLAQALKEKVVLDDDV 1131 AL + + E L + + L+ +D V Sbjct: 978 ALANNESAVRELGDETLKKIAVEITDKLRRSTTVDWQV 1015 >UniRef50_C9LYN5 Type I restriction-modification system R subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LYN5_9FIRM Length = 742 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 155/879 (17%), Positives = 275/879 (31%), Gaps = 173/879 (19%) Query: 5 SNFEFL--KGVNDFTYAIACAAENNYPDDPNTTLIKMRMFGEATAKHLG---LLLNIPPC 59 SNF+FL + A AE + I + + + L +P Sbjct: 3 SNFDFLMARKDYKAIAKTAMEAERRFGTSYPECAILAERAVKLAVRWMFTHDAGLALPYR 62 Query: 60 ENQHDLLRELGKIAFVDDNILSVFHKLRRIGNQAVH-EYHNDLNDAQMCLRLGFRLAVWY 118 E L+ E + S+ H + +GN + +A + LR W Sbjct: 63 EAIARLIHEPTLKKLRPAGMNSLVHYILHLGNVVAYRGMDVSREEALLALRGLHAALSWL 122 Query: 119 YRLVTKDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVAL 178 + F F +E +L + +E + A + +++ A Sbjct: 123 AACYEEG--FSPTPFDESLLPTG--GKEHNANPLKLLELYKEPFEGGALLPRRKKNREAS 178 Query: 179 NGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTL 238 + A+ E + + + A L Sbjct: 179 EKFAALREKNRNGSVVEVPADLL------------------------------------- 201 Query: 239 NLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 E+R I +AGW E A E K T + F Sbjct: 202 ----AETRGRYILVDSAQAGWTLG------------EDFFMNAQIEGAGKKTPTIDILFT 245 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 D KP+AV+ K + ++ ++ + + + Sbjct: 246 D----AEKKPLAVMAVKAAEHSAEDGVAQAKEWATLVEQKYGERPYIFLLREGGYCY--- 298 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 + + + + Sbjct: 299 ------------------------------------------LDEASGTLRPIHGCFSRA 316 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 L L D G ++ R YQ++AV + + + +G + +L++ GTGK Sbjct: 317 GLERRLRFRRLYDPDGHPDLAG--DIVNRPYQQEAVWRICEDVHRGVRRLLVSTPPGTGK 374 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TR A + L+ + ++L+L DR L QA F + + L D Sbjct: 375 TRMAAGAIEALLHQKAVSKVLYLADREELVHQAYEQFRMLLPDAKLVDL------LGDVR 428 Query: 538 PEDSTKIHVATVQSLV-----KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQ 592 E I AT ++ RT A +D +++DE+H D Sbjct: 429 EEAQADIVFATATIMMDAVNESRTETGARLYDPAHFDLVIIDESHPSIYDDHLV------ 482 Query: 593 FRSQLDYVSAYRRILDHFDAVKIAL-----TATPALHTVQIF-----GEPVYRYTYRTAV 642 IL++FDA+ + TA P V F G+P + Y+ A+ Sbjct: 483 -------------ILNYFDAILLGFSSLPPTA-PGEAEVYRFYDLAPGKPTFAYSLAEAL 528 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 DG+L+D + + + + + +R + E + +DF+V N L Sbjct: 529 RDGWLVDFTLRDEAPEGVMEPRLLYADLTEEQRTIAEMEYSDTGAIASKDFDVPAVNNWL 588 Query: 703 VIPAFNRAVCNELTNYLDPTGS---QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDA 759 +A+ L + T KT++F + A + + +P+ D Sbjct: 589 FSEETIQAMLENLLQHGLKTPDGKLGKTIIFAKNSLQAKAIAFIFQRL----HPEYGADF 644 Query: 760 IIKITGDADKDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRI 818 I + + + F+ + I V+VD+L TG DIPS+ N+VF RKV S Sbjct: 645 IRALDARTP----DLAEAVQAFSLSDEQLTIAVSVDVLDTGFDIPSVENLVFFRKVHSLS 700 Query: 819 LYEQMKGRATRLCPE-----VNKTSFKIFDCVDIYSTLE 852 + QM GR R C + +K F + D ++ + Sbjct: 701 KFSQMLGRGMRFCADLNGAGKDKEKFLVMDYCKNFTFFD 739 >UniRef50_Q07736 Type I restriction enzyme EcoAI R protein n=63 Tax=cellular organisms RepID=T1RA_ECOLX Length = 810 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 183/855 (21%), Positives = 315/855 (36%), Gaps = 141/855 (16%) Query: 236 RTLNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 NL+E + + + AGW ++ R E + Sbjct: 5 NLSNLTEADIITKCVMPAILNAGWDNTTQ-------IRQEVKLRDGKVIVRGKVAARRTV 57 Query: 295 GFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 AD VL+ P+AV+EAK N ++ + + Y++ D Sbjct: 58 KSADIVLYHKPGIPLAVIEAKANKHEIGKGMQQGIEYARLLD------------------ 99 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNM----SKA 409 +PF ++TNG G +RD Sbjct: 100 --------------------VPFVFATNG----------DGFIFRDATAAEGECLEKQIT 129 Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADN-----PGMSELGLRYYQEDAVRAVEKAIVKGQ 464 L ++ P EL + S RYYQ A+ +A+ GQ Sbjct: 130 LDDFPSPAELWQKFCLWKGYTQAQLPVITQDYYDDGSGKSPRYYQLQAINKTIEAVSNGQ 189 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGA-FEDTRINGDT 523 +LL MATGTGKT TA +++RL +S+ KRILFL DR L +Q F+ Sbjct: 190 NRVLLVMATGTGKTYTAFQIIWRLWKSKNKKRILFLADRNILVDQTKNNDFQPFG----- 244 Query: 524 FNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD--EPMPVARYDCIVVDEAHRGYI 581 + ++ + + + +IH+A Q++ + + +D IV+DE HRG Sbjct: 245 ----TAMTKVSGRTIDPAYEIHLALYQAITGPEEDQKAFKQVAPDFFDLIVIDECHRGSA 300 Query: 582 LDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPALH----TVQIFGEPVYRY 636 + SA+R ILD+F A +I LTATP + FG+PVY Y Sbjct: 301 SED----------------SAWREILDYFSSATQIGLTATPKETHEVSSTDYFGDPVYVY 344 Query: 637 TYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVA 696 + + + DGFL +++ +G +KG+ +N + DD+ + Sbjct: 345 SLKEGIEDGFLAPYKV-VRVDIDVDLQGWRPTKGQT---------DLNGEVIDDRIYNQK 394 Query: 697 DFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQL 755 DF+R +VI V +T+YL T KT+VFC HA+ + L ++ + Sbjct: 395 DFDRTMVIDERTELVARTITDYLKRTNPMDKTIVFCNDIDHAERMRRALVNLNPEQVKK- 453 Query: 756 EHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVR 815 ++KITGD + ++ I K+ P I T +L+TTGVD + +V + ++ Sbjct: 454 NDKYVMKITGDDEIGKAQLDNFIN--PKKPYPVIATTSELMTTGVDAKTCKLVVLDQNIQ 511 Query: 816 SRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLES----------VDTMRPVVVRPK 865 S ++Q+ GR TR+ K F I D +DT + P+ Sbjct: 512 SMTKFKQIIGRGTRIDERYGKLWFTILDFKKATELFADERFDGIPEKVMDTTPEDIADPE 571 Query: 866 VELQTLVNEITDSET-------------YKITEADGRSFAEHSHEQLVAKLQRIIGLATF 912 + + + EI++ + Y++T+ D E+ + K Sbjct: 572 SDFEEKLEEISEHDEEQVTGVDEPPAPPYQVTDTDDVGPLPEEDEKKIRKFHVNGVAVGV 631 Query: 913 NRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLK 972 R + D + + E +D + L + W + ++ I LE+ Sbjct: 632 IAQRVQYYDADGKLVTESFKDYTRKTLLKEYASLDDFTRKW--QDADRKEAIIHELEQQG 689 Query: 973 TDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDS---LVQRSPNAQPALQAVI 1029 L + +++ T ++ E + S AQ L ++ Sbjct: 690 IIWEVLAEEVGKDLDPFDMLCHVVYGQPPLTRKERAENVRKRNYFTKYSEAAQAVLDNLL 749 Query: 1030 NRPRDLTRKGLVELQ 1044 ++ D + + +Q Sbjct: 750 DKYADAGVQEIESIQ 764 >UniRef50_A4FZ35 Type III restriction enzyme, res subunit n=1 Tax=Methanococcus maripaludis C5 RepID=A4FZ35_METM5 Length = 912 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 183/998 (18%), Positives = 348/998 (34%), Gaps = 167/998 (16%) Query: 240 LSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 L+E+++R LID +L++ GW + N + + D Sbjct: 9 LNEKQTRKRLIDTELKRVGWLEKYIKEEVNSVKSDFKNKNYILD----NGIYESGDHYID 64 Query: 299 YVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 Y+L PIA++EAKR + D ++ Y+K ++ Sbjct: 65 YLLLGEDNSPIAIIEAKRYSKDPQDGRIQARTYAKDIESQTGVNVP-------------- 110 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 + TNG + ++ D + + + + + Sbjct: 111 -------------------IFLTNG-------------YVWELIDEKGIERKVSRPFSQK 138 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 ++ +++ + R Q V+ + + +G ++ L+ MATGTGK Sbjct: 139 DIERRADLFKNEKSPKDLEINSYIVDRPRSVQI--VKRLSEHFSEGHKKALIEMATGTGK 196 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 TR A+A+ LI+S + ILF+ DR L +QAL + + + L Sbjct: 197 TRVAMAVCDILIRSNYARNILFIADRTVLVDQALNKGFKKYFIDEAVADLRNGYNL---- 252 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 ++++V+TVQ+L E +D ++ DEAHR Y Sbjct: 253 ---DSRLYVSTVQTLKNGDDPLFEKYSPGFFDLVIFDEAHRSYYDKNNV----------- 298 Query: 598 DYVSAYRRILDHFDAVKIALTATPA----LHTVQIF----GEPVYRYTYRTAVIDGFLID 649 I+++FDA++I LTATP +T +F G P Y+Y AV DG L+ Sbjct: 299 --------IMNYFDAIQIGLTATPKDEVSHNTYDLFGCDKGVPTAEYSYDEAVQDGVLVP 350 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 I I T G+ +G ++ + D +F ++F R + N Sbjct: 351 YIGKI-IETEVLSLGI---EGIKLSDDLKDQLRRQEQDPDLTEFSGSEFERIFLDDKTNE 406 Query: 710 AVCNELTNY---LDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD 766 + ++ Y D + KT+ FC+ HA + + YP +D + ++ Sbjct: 407 LIIHQFMKYCYRSDDSKPAKTIFFCMGKEHAKKIKKLFSKL----YPSYSNDVQVILS-- 460 Query: 767 ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 D ++ Q + RF E P IV++V ++ TGVD+P + N+VF++ V S+ + QM GR Sbjct: 461 ---DMQRYQDEVKRFEHESEPRIVISVGIMDTGVDVPEVSNLVFVKPVFSKTRFWQMVGR 517 Query: 827 ATRLC---------PEVNKTSFKIFDC-VDIYSTLESVDTMRPVVVRPKVELQTLVNEIT 876 TR PE +K F I D V +S + + +PK + + + E Sbjct: 518 GTRNFKACDHPEWLPEGDKKDFLILDFKVGGHSNILYHEFTPTTEGKPKKDTVSKIFENR 577 Query: 877 DSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFN-----------RDRSETIDKQVR 925 + + + + KL + + + I + Sbjct: 578 VELLSNGLFGENKEIITEKVIESIEKLDNESFIVRERLPIIREIHENKFNIEKYISELRN 637 Query: 926 RLDELCQDAAGVNF--NGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDI-------N 976 + L G N + F + P+ + + + +I + Sbjct: 638 DILPLMITTQGENPKISSFVLISEKLYPYILENKLDNIEKIKKFIIYRAENILLKDNLED 697 Query: 977 NLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSL---VQRSPNAQPALQAVI---N 1030 + + I E + D+ L ++ +P A ++ N Sbjct: 698 VKVNRESIISIMQENFWDDLTFSKVDSMIKTLAPLMKYYTKIKGNPIQIDAPDVILSVEN 757 Query: 1031 RPRDLTRKGLVELQEWFDRQHFEES-------------SLRKAWKETRNEDIAARLIG-- 1075 + ++ EL+E+ + L + + E + Sbjct: 758 YTKQISENT--ELKEFLENNEIARKIYQGIGISSVELLKLEAELVKLKPEISINSIQNIY 815 Query: 1076 ------HIRRAAVGDALKPFEERVDHALTRI-KGENDWSSEQLSWLDRLAQALKEKVVLD 1128 IR E ++ ++S+Q+ +L+ L + ++ ++ Sbjct: 816 KKDFLVFIREMLKMKLDNNPRELIELRFDEFIINSRQYNSKQIEFLNLLKKVFSDRKHIE 875 Query: 1129 DDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIW 1166 F F L R D L++++ K ++ I Sbjct: 876 LSDFSKAPFKDE---NPLDRFEFDELESIVNKCNNNIL 910 >UniRef50_Q0W5N4 Type I restriction modification enzyme, restriction subunit n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W5N4_UNCMA Length = 986 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 127/902 (14%), Positives = 260/902 (28%), Gaps = 91/902 (10%) Query: 173 QKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQ 232 +++ A + K+ A + L ++ NA + +A ++ Sbjct: 24 KEMFAKDIDRLRTSLKETVITPMLIAAIKRLNPWISTDNANRVARDISNVQATSVLEANE 83 Query: 233 AIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETG 292 I L R + Q + G S + PE A+ ++ + Sbjct: 84 KIHAMLE------RGVTVVQDKNDGLGIKSHDVFLIDFENPERNEFVAVRQFRVQHYKD- 136 Query: 293 NQGFADYVLFVGLKPIAVVEAKRNNID--VPARLNESYRYSKCFD---NGFLRETLLEHY 347 D LF+ P+ ++E K I + + + RY + D N Sbjct: 137 --IIPDITLFINGIPLVLIECKSPKIQNPMDEGIRQICRYQEMEDADRNMGAPRLFHTVQ 194 Query: 348 SPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMS 407 + +Y T++ ++ PF + T + + R Sbjct: 195 IVASTFKHKTKYATNYTPRRDWSIWREPFPF------------TLDDLAKKLGRPPTEQD 242 Query: 408 KALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI-VKGQQE 466 L E LL+++ + + ++ + +Y Q AVR + + I + ++ Sbjct: 243 IFLYGVCSKENLLDIIRTFVVFER----ESGRTVKKIAKYQQYRAVRNILRGISREKRKG 298 Query: 467 ILLAMATGTGKTRTAIAMMFRLI--QSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTF 524 ++ G+GK+ T + +L + I+ + DR L +Q F+ Sbjct: 299 GVVWHWQGSGKSLTMLWTSVKLRLNKELENPTIVIITDRTDLDDQIFSTFKRCGF--PNP 356 Query: 525 NSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDK 584 K L + + + + TVQ + ++VDEAHR Sbjct: 357 VKAKSSKHLQELLRDPVGQTIMTTVQKFQDAA-DMYPVLTENDNIFVLVDEAHRTQY--- 412 Query: 585 EQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRT 640 + RR + + I T TP T FG + RY + Sbjct: 413 ------------RSLAANMRRAIK--NGCFIGFTGTPIFKRDRDTFDKFGPYLDRYDHNQ 458 Query: 641 AVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNR 700 +V D + ++ + V + + + D Q + Sbjct: 459 SVQDEVTVPILYESRMP----ELSVSGKSLDALFDRIFRDYSPEDRERIKQKYATT--AA 512 Query: 701 GLVIPAFNRAVCNELTNYLDPT---GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEH 757 + A+C ++ + + K + A L + Sbjct: 513 IAMATPRINAICLDIIQHYESHILPNGFKAQIVAENREMAVKYKRTLDSL----GAPSSE 568 Query: 758 DAIIKITGDAD-----KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLR 812 I +++ K + + +I R+ +E P I+V D L TG D P + Sbjct: 569 VLITVGHNESNLMEFQKSKEEEKEVIRRYKEEADPKILVVCDKLLTGFDAPVEQVMYLDS 628 Query: 813 KVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRP----KVEL 868 +R L Q GR R K + D + L+ M R Sbjct: 629 PLREHTLL-QAMGRVNRKRE--GKNFGIVIDYWGVSEDLQEALHMYSAEERQGMILTNYK 685 Query: 869 QTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLD 928 ++ + + IT D + E L R + + R +D Sbjct: 686 VEILPRLEMAYRSAITFFDAAKATQKPGETLDEACVRYLAPEDRRAAFDQRFKLFSRYMD 745 Query: 929 ELCQDAAGVNFNGFASRL-------REKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDA 981 L D ++F + R + +++ Sbjct: 746 MLLPDPRALDFMHDLKWMAGIRMTARNVYREEQTPLDGCSEKVRKLIDEHIKVEGITTLV 805 Query: 982 PIFLDIDDEVVSVKSLYGDYDTPQDFLE-AFDSLVQ-RSPNAQPALQAVINRPRDLTRKG 1039 + G ++ ++E A + + + +++ R + + Sbjct: 806 EAVPIFSQKFDEEIDKLGSAESKASYIEHAIRHEINVKMGDDPVFFESLRIRLERIIKDY 865 Query: 1040 LV 1041 + Sbjct: 866 IE 867 >UniRef50_C6Q568 Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q568_9THEO Length = 1033 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 129/1001 (12%), Positives = 298/1001 (29%), Gaps = 131/1001 (13%) Query: 171 QQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEIT 230 + + ++ + + L L +L + E A + + + E+ Sbjct: 24 YEYLHGNEIPVEDRKDYREVILKNRLYKALIRLNPELPLECIEEAVRQLKNLQYPRIELN 83 Query: 231 DQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDE 290 ++ I + + +R G + ++ E + + Sbjct: 84 NREIHKVYRNGAKVTRR------NSEGEEVGEI-VKIFDYENIENNEFLVCNQVKI---K 133 Query: 291 TGNQGFADYVLFVGLKPIAVVEAKRN---NIDVPARLNESYRYSKCFDNGFLRETLLEHY 347 D V+++ P+ + E K + + Y + + F + Sbjct: 134 GAGLRIPDIVVYINGLPVGLFELKNPLDEAATIEGAYRQLELYKRDIPDIFAYNEICVVS 193 Query: 348 SPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMS 407 ++ E + K+ G+ V + Sbjct: 194 DGNKAKAGTITTPW----------------------ERFSAWKSIDGV--SSVEGMPELE 229 Query: 408 KALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQED----AVRAVEKAIVKG 463 + +L+++ + + ++ Y+Q AV +A G Sbjct: 230 VLIKGMFDKRRVLDIIRNFITFSTAK----DEVIKIMAMYHQYYGVNKAVEETIRATSPG 285 Query: 464 QQE--ILLAMATGTGKTRTAIAMMFRLIQSQR--FKRILFLVDRRSLGEQALGAFEDTRI 519 G+GK+ + + ++I+ + I+ + DR L +Q F + Sbjct: 286 GDRRIGTFWHTQGSGKSLSMVFYTGKIIELKELQNPTIVVITDRNDLDDQLYETFCNASD 345 Query: 520 NGDTFNSIFDIKGLTDKFPE-DSTKIHVATVQSLVKRTLQSDEPMPV------------- 565 + L +K + + I T+Q + E + Sbjct: 346 LIPYPKQAESVGDLKEKLSQIAAGGIFFTTIQKFQAEAEEVSEVVDPKLKKALKKGKTYP 405 Query: 566 ----ARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP 621 ++VDEAHR + + R+ L +A I T TP Sbjct: 406 LLSDRSNIIVIVDEAHRSHY------------EFIDGFAKYIRQALP--NASFIGFTGTP 451 Query: 622 ----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERIS 677 T+Q+FG + Y + AV D ++ +++ + Sbjct: 452 IDLEDRSTLQVFGNYISIYDMKQAVEDKAIVPIYYEGRLVKLHLINENIDRDF------E 505 Query: 678 PQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT---GSQKTLVFCVTN 734 E + +++ + A + + ++ + + K ++ C++ Sbjct: 506 EVTEGEEEEVKNKLKTKWAALEALVGTKERLETIARDIVEHFEERCKVLEGKGMIVCMSR 565 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKI--TGDADKDARK----------VQTMITRFN 782 + E+ + +IKI +G+A KD ++ ++ + R Sbjct: 566 RICVDLYNEIIKLRPHWHSDDLDKGVIKIVMSGNASKDPKEFLTHLYTKSQIKEIEKRMK 625 Query: 783 KERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKI 841 P +V+ D+ TG D+P + + + +R L Q R R+ +K + + Sbjct: 626 DPNDPLKLVIVRDMWLTGFDVPCLHTMYIDKPMRGHNLM-QAIARVNRVF--KDKPAGLV 682 Query: 842 FDCVDIYSTLESVDTMRPVV---VRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQ 898 D + I L+ + + + + + + G F+ + Sbjct: 683 VDYIGIADDLKLALANYTRSTGKEAATLPIDEAIRIMQEKYDIVCSYFHGIDFSGWEEKS 742 Query: 899 LVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSA--- 955 KL + T + + LC+ A V A R+R + A Sbjct: 743 AEDKLSLLKQAMDLINKDETTKKNFLDQCMALCKAFALVVPREEAMRIRSDVAFFQAVRS 802 Query: 956 EVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFL-EAFDSL 1014 + P +E+L + I + + D+ + + G L E F + Sbjct: 803 NIVKYTPPKGLSIEELDSAIKQIISEGV--AASDKPIDIFDAAGLKKPDLSILSEEFLNK 860 Query: 1015 VQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLI 1074 + N ++ + D + + + F+E R K +A +I Sbjct: 861 LMGHENKNLQIEVLRKLLNDEIKAKIR--KNHVKYASFKEMIERVLNKYHNRAITSAEVI 918 Query: 1075 GHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLD 1115 H+ A ++ ++R + + E++++ D Sbjct: 919 KHLIDLAKE--MQNMDKRAKEM--------NLTEEEMAFYD 949 >UniRef50_B8EFY3 Type I site-specific deoxyribonuclease, HsdR family n=16 Tax=Proteobacteria RepID=B8EFY3_SHEB2 Length = 1084 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 140/927 (15%), Positives = 284/927 (30%), Gaps = 132/927 (14%) Query: 277 VNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN---NIDVPARLNESYRYSKC 333 N+ + T D ++F+ PI+V+E K + D+ N+ Y Sbjct: 124 NNEFLIVNQFTITGTKGNRRPDVLVFINGLPISVIELKNPADEHADIWNAFNQLQTYKDE 183 Query: 334 FDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKS 393 + F+ L + T +E KT + Sbjct: 184 ISDLFIFNEALVVSDG----------------------WTARVGSLTANKERFLPWKTVT 221 Query: 394 GIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAV 453 G + + + + + + +P+ LL+ + + DN + + Y+Q AV Sbjct: 222 GEDDKPLLEF-QLETMVRGFFKPDLLLDYIRYFILFE----IDNDNIIKKIAGYHQFHAV 276 Query: 454 RAVEKAIVKGQ--------------------------------QEILLAMATGTGKTRTA 481 RA +A VK + + ++ G+GK+ + Sbjct: 277 RAAVEATVKAKQADSDLPMVAESIGKYQVQATKGLDKIKAGSGKAGVVWHTQGSGKSISM 336 Query: 482 IAMMFRLIQSQ--RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE 539 + +L+Q I+ + DR L Q F + D + L + Sbjct: 337 VCYASKLLQQPAMNNPTIVVVTDRNDLDGQLYNTFGMAQETLKQIPQQADGRDLLRQLLL 396 Query: 540 D--STKIHVATVQSLVKRTLQSDEPMPVARYDCIVV-DEAHRGYILDKEQTEGELQFRSQ 596 + S I T+Q + + P+ R + +VV DEAHR +K + Sbjct: 397 NRQSGGIIFTTIQKFALLDDEIEHPILSTRANIVVVSDEAHRSQYGNKSKLVEVKDANGN 456 Query: 597 L-------DYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDG 645 + Y R L +A I T TP T +FGE V Y + AV DG Sbjct: 457 VTGSKYVFGYSKYMRDALP--NASFIGFTGTPIAMDDKDTRGVFGEYVSVYDIQDAVDDG 514 Query: 646 FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIP 705 + ++ + + +QVE + E + A + + Sbjct: 515 ATVPIYYESRLAKLDINQAEIEELNDQVEDEIGEEEETASREQIKSQ--WATLEKLVGAE 572 Query: 706 AFNRAVCNELTNYLDPTGS---QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 + V +L N+ K ++ ++ + + A + + IK Sbjct: 573 PRIQQVALDLVNHFSTRSETFPGKAMIVAMSREICVDLYNAIVAIKPEWHHPDPDKGAIK 632 Query: 763 I--TGDADK---------DARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVF 810 I TG A D + + R+ + +V+ D+ TG D P + Sbjct: 633 IVMTGSASDKEKMQPHIHDKKTKKLFEKRYKDTQDELQLVIVRDMWLTGFDAPCCHTMYI 692 Query: 811 LRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVV---VRPKVE 867 + ++ L Q R R+ +K + D + I + L++ +P V+ Sbjct: 693 DKPMKGHNLM-QAIARVNRVF--KDKPGGLVVDYIGIANELKNALKTYTNSQGKGQPTVD 749 Query: 868 LQTLVNEITDSET---------YKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSE 918 + + + + R E + +L+ + + + E Sbjct: 750 TAEAFSVLMEKIDIVRGMFATPVDGAVFNYRPEFETNALRLLPGAVNHLSGLSHRNSKGE 809 Query: 919 TIDKQVRRLDELCQDAAGV-----NFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKT 973 + RR ++ + E + + + + + + Sbjct: 810 EVRDGKRRFLDVMAAMTKAFSLCNTMDETQGYKNEIAFYSAIKTAFIKHSTVDKKRSDEE 869 Query: 974 DINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFL-EAFDSLVQRSPNAQPALQAVINRP 1032 L I D V + ++ G L E F V+ A++ + Sbjct: 870 RNTALKQILDNAIIADGVDDIFNMVGLDKPNIGLLSEEFLEDVKNMKEKNLAVELLEKLL 929 Query: 1033 RDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDI-AARLIGHIRRAAVGDALKPFEE 1091 RD + + ++ + ++ N I A++I + + A A Sbjct: 930 RDEVKARMKN---DVVQEKKYSERIMTTLQKYHNRSIETAQVIEELIKWAKEMA------ 980 Query: 1092 RVDHALTRIKGENDWSSEQLSWLDRLA 1118 A + + S +++++ L Sbjct: 981 ----ADAEMAEGLNLSPDEIAFYRALV 1003 >UniRef50_B9MJI2 Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Diaphorobacter sp. TPSY RepID=B9MJI2_DIAST Length = 855 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 115/762 (15%), Positives = 227/762 (29%), Gaps = 106/762 (13%) Query: 183 AILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSE 242 A Q + + L + N + R+ + D I L+ + Sbjct: 28 AQDGINPQRADYRQVVLSFRLREAIQRLNPHIPT---AAREDALHRVLDLGIPSLLSANR 84 Query: 243 EESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLF 302 + L+ + + +++ E N+ A + D +LF Sbjct: 85 AFHKLLVGGVPVQYQKEGETRGDFVRLVDWSEASRNEFWAVNQFTIKGPHHTRRPDIILF 144 Query: 303 VGLKPIAVVEAKRNN---IDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 V P+ ++E K D+ ++ Y + + F +L E Sbjct: 145 VNGLPLVLLELKNPADQAADIWKAYDQIQTYKEHIPDVFQYNEVLVISDGTEARLGS--- 201 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 + E +T G+ + + + + P+ L Sbjct: 202 -------------------LSANAERFMQWRTIDGVNLDPLGEFNELETLVRGALAPQYL 242 Query: 420 LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI----------VKGQQEILL 469 L+ L F D+ + + Y+Q AVR+ + + + ++ Sbjct: 243 LDYLRYFVL-----FEDDGSLVKKIAGYHQFHAVRSAIAHVVAASRPDSAANQRGKGGVV 297 Query: 470 AMATGTGKTRTAIAMMFRLIQSQR--FKRILFLVDRRSLGEQALGAFE-DTRINGDTFNS 526 G+GK+ T R++Q I+ + DR L Q G F + + Sbjct: 298 WHTQGSGKSITMTCFAARVMQEPAMANPTIVVITDRNDLDGQLFGVFSLAQDLLREQPAQ 357 Query: 527 IFDIKGLTDKF-PEDSTKIHVATVQSLVKRTLQSDEP-MPVARYDCIVVDEAHRGYILDK 584 + L S I AT+Q + + P + ++ DEAHR + Sbjct: 358 ASTRQQLRQLLSNRPSGGIVFATIQKFMPGEDEDMFPVLSERHNIVVIADEAHRTQYGFE 417 Query: 585 EQ-------------------------------TEGELQFRSQLDYVSAYRRILDHFDAV 613 + E E + Q+ Y R L H A Sbjct: 418 AKLKTIKNKGASAAKALVLADGETSGAAVTADFAEPEYLTKYQVGYAQHLRDALPH--AT 475 Query: 614 KIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSK 669 +A T TP T +FG+ + Y + A DG + ++ +E Sbjct: 476 FVAFTGTPVSSTDRDTRAVFGDYISVYDMQQAKEDGATVAIYYESRLAKLRLKEEDLSFL 535 Query: 670 GEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS---QK 726 ++V+ ++ E + A + + +V +L + + K Sbjct: 536 DDEVDELAEDEEESTQAQLKSR---WAALEKVVGATPRVASVAADLVAHFEERNKTQDGK 592 Query: 727 TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI--TGDADK---------DARKVQ 775 +V ++ + E+ + IKI TG A A+ + Sbjct: 593 AMVVAMSRDICVHLYNEIVKLRPDWHDSDPEKGAIKIVMTGSASDKALLRPHIYSAQVKK 652 Query: 776 TMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEV 834 + RF P +V+ D+ TG D P + + + ++ L Q R R+ Sbjct: 653 RLEKRFKDPTDPLRLVIVRDMWLTGFDAPCVHTMYVDKPMKGHNLM-QAIARVNRVF--K 709 Query: 835 NKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEIT 876 +K + D + I + L++ ++ Sbjct: 710 DKQGGLVVDYIGIGNELKAAMKEYTASQGRGKPTVDAHEALS 751 >UniRef50_C2HHS1 Possible type I site-specific deoxyribonuclease n=1 Tax=Finegoldia magna ATCC 53516 RepID=C2HHS1_PEPMA Length = 1034 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 137/998 (13%), Positives = 315/998 (31%), Gaps = 97/998 (9%) Query: 169 EAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKE 228 + ++ + + Q+ + A E + + Sbjct: 8 DGFEKIFIKAIEDLGYKYVAHQDIVRDSMKSPIASEMLRESLRRINCELEDAAIDQAIHV 67 Query: 229 ITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGK 288 I + ++ +E +L + T R N + Sbjct: 68 IKNIDAGLLVDRNEIFFEYLQNGIEIVHLENNMPVTDRVHLIDYDHFMNNTFVVTNQLTI 127 Query: 289 DETGNQGFADYVLFVGLKPIAVVEAKRN---NIDVPARLNESYRYSKCFDNGFLRETLLE 345 + D +++V P+ VVE K N DV + + Y + F+ Sbjct: 128 V-GKDTKRPDVLVYVNGLPLVVVELKSMTSLNSDVSSAYRQIKNYQHDIEELFVYNVFNI 186 Query: 346 HYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRN 405 T G + K+ G + + + Sbjct: 187 ISDFTTTKVGTI----------------------TAGESWYKEWKSTDGSY--ESTKYAD 222 Query: 406 MSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVK--- 462 + LL+++ + ++Q N +++ +Y+Q AV + + Sbjct: 223 YKTLVEGVLEQHRLLDIIRNFIFFEHQ----NDSTNKILAQYHQYFAVEKAAHSTTQAMA 278 Query: 463 --GQQEILLAMATGTGKTRTAIAMMFRLI---QSQRFKRILFLVDRRSLGEQALGAF-ED 516 + + G+GK+++ + + L+ Q + L DR L Q F Sbjct: 279 IGDGRGGVFWHTQGSGKSKSMVFYVHYLMNMDQWYSNPTFVVLTDRNDLDTQLFEQFARA 338 Query: 517 TRINGDTFNSIFDIKGLTDKFPE-DSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDE 575 R T K L D + S I +T+Q +SDE + ++ DE Sbjct: 339 RRFLRQTPVQATSRKNLHDLLNDRKSNGIFFSTMQKFA----ESDESLTDRDDVIVIADE 394 Query: 576 AHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGE 631 AHR +E+ + + Q R+ L +A I T TP T +IFGE Sbjct: 395 AHRSQYGLREKISKD--GKVQSGMARLVRKSLP--NATYIGFTGTPISKNDKDTQEIFGE 450 Query: 632 PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ 691 + Y AV DG ++I + ++ E ++ N+ + Sbjct: 451 YIDIYDMSQAVEDGATKPVYYENRVINLGLNSDILKRIDDKYEELAENA---NEYDIERS 507 Query: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS----QKTLVFCVTNAHADMVVEELRAA 747 +++ + + + +++ ++ + T K ++ A + +++ Sbjct: 508 KRDLSRLEQVIGSDECIDTLVHDIIHHYETTRKDLLTGKAMIVAYNREIAVKIYKKIMEI 567 Query: 748 FKKKYPQLEHDAIIKITGDADKD--------ARKVQTMITRFNKERLP-NIVVTVDLLTT 798 ++ ++ + + D + +++ + ++F + P I + VD+ T Sbjct: 568 RPNWNEKVN---VVATSSNNDPEDWKKIIGNKSEMEELASKFKNDDDPFKIAIVVDMWLT 624 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMR 858 G D+PS+ + + ++ L Q R R+ +K + D + I + L+ Sbjct: 625 GFDVPSLATLYVFKPMQGHNLM-QAIARVNRVF--KDKEGGLVVDYIGIANALKKAMIDY 681 Query: 859 PVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRD--- 915 + ++ + K+ + +E + + +A D Sbjct: 682 TKSDQQIIDNADIRKSAYPLFVAKLEKIREVYLKRFDYEAIFDENVNDEKIAELIMDGLN 741 Query: 916 --RSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKT 973 + D Q + + + E+ E I K+ Sbjct: 742 YVLGFSEDNQNKFKKLSYELKQSHTLCSSITSEHEQREAAFIEAIRTSLNRITIGGKIPK 801 Query: 974 DINNLNDAPI--FLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINR 1031 I ++ + + D V+++ + + + D L F +++ +++ + Sbjct: 802 HIIDMEISKLLRKSIHSDGVINLFQDFENGFSLFDPL--FMEKIKKMEQKNISIELLNKL 859 Query: 1032 PRD----LTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRA-AVGDAL 1086 +D +R +V+ Q++ +R R + N +G + + D Sbjct: 860 LKDEIAIFSRGDIVKGQDFSERLQNIMKRYRNNMVD--NAKSLDHFVGVVEDEKSKYDMD 917 Query: 1087 KPFEERVDHALTRIKGEND-----WSSEQLSWLDRLAQ 1119 EE + A +K + + S E+L++ +++ Sbjct: 918 YIREELIKLAQDMVKMDEENKKLGLSKEELAFYHAISK 955 >UniRef50_B1Y673 EcoEI R domain protein n=12 Tax=Bacteria RepID=B1Y673_LEPCP Length = 824 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 182/881 (20%), Positives = 310/881 (35%), Gaps = 148/881 (16%) Query: 247 FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVG-L 305 I + +AGW + R + + + + ADY LF Sbjct: 15 KFIRPAIERAGWNGMDQIYREYPLRA-----GRVVVRGRKARRDASTVLRADYALFYKLN 69 Query: 306 KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQD 365 P+AVVEAK + V A + ++ Y+ D Sbjct: 70 IPLAVVEAKDASHAVGAGMAQAINYAALLD------------------------------ 99 Query: 366 TSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTR---NMSKALPEWHRPEELLEM 422 +PF +++NG G +RD L ++ P EL Sbjct: 100 --------VPFSFASNG----------DGFIFRDATLADGVLERYLTLDQFPSPAELWAK 141 Query: 423 LGSEP--QKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 + + + A+ RYYQ +A+ +AI +G+Q LL MATGTGKT T Sbjct: 142 YCAWKGWTAEVRKVAEFDYAPAKTPRYYQLNAINRTVEAIAQGRQRALLVMATGTGKTYT 201 Query: 481 AIAMMFRLIQSQRFKRILFLVDRRSLGEQAL--------GAFEDTRINGDTFNSIFDIKG 532 A +++RL +S KRILFL DR L +Q + GA N + Sbjct: 202 AFQIIWRLWKSCAKKRILFLADRNILIDQTMVNDFRPFKGAMAKLSPNAKGVERVDAQGR 261 Query: 533 LT-----------DKFPEDSTKIHVATVQSLVKRTLQSD--EPMPVARYDCIVVDEAHRG 579 + K + S +I+++ Q++ + +S+ + +D I+VDE HRG Sbjct: 262 VGVEDVTLAVNRTTKQVDTSYEIYLSLYQAVTGTSDESNIYKQFSPDFFDLIIVDECHRG 321 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPALH----TVQIFGEPVY 634 + S++R IL +F A ++ LTATP FGEP+Y Sbjct: 322 SAAED----------------SSWREILSYFSSATQVGLTATPKETQDVSNSDYFGEPIY 365 Query: 635 RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFE 694 Y+ + + DG+L + L + R + L +D+ + Sbjct: 366 TYSLKQGIEDGYLAPYKVV----------RIDLDRDTFGWRPTEGMTDKLGNLIEDRVYT 415 Query: 695 VADFNRGLVIPAFNRAVCNELTNYLDPTGS-QKTLVFCVTNAHADMVVEELRAAFKKKYP 753 AD NR LV+ + V ++T YL T KT+VFC HA + + L A Sbjct: 416 GADMNRRLVLERRDEVVAAKITEYLKATDREAKTIVFCEDIDHAARMRQALSNA-NADIC 474 Query: 754 QLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 Q + +++ITGD + R++ I ++ P I T L++TGVD + IV + Sbjct: 475 QTQPRYVVQITGDNPEGKRELDNFID--PEKTYPVIATTSKLMSTGVDAQTCKLIVLDQN 532 Query: 814 VRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT-------MRPVVVRPKV 866 ++S L++Q+ GR TRL ++ KT F I D D P P Sbjct: 533 IKSMTLFKQIIGRGTRLREDLGKTWFTILDFKRATELFADKDFDGEPVQVYEPKGDEPVE 592 Query: 867 ELQTLVN----------EITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDR 916 + E + T+ F + R+R Sbjct: 593 PPEVADPGDPAGQPDAGEEGAGDPPTGTDPPLGPFGGGDDAPPRKYVIGGQVNVQVARER 652 Query: 917 SETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDIN 976 + ++ + + E +D +N L + W++ + I LE+ ++ Sbjct: 653 VQYLNADGKLVTESLRDYTRINLAKRFDSLDQFLQTWNS--AERKAVLIDELERQGVFLD 710 Query: 977 NLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLT 1036 L D +++ + T ++ + V + Sbjct: 711 ALADEVGKDLDPFDLLLHVAYDQPPLTRRERARRVKQ------------RNVFTDYGPMA 758 Query: 1037 RKGLVELQEWFDRQHFEESSLRKAWKETRNEDI--AARLIG 1075 RK + L + + + + + A +I Sbjct: 759 RKVIDALLDKYADEGIATIEGQSVFNVQPFNQFGSATEIIK 799 >UniRef50_C0GS48 Putative uncharacterized protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GS48_9DELT Length = 1016 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 142/1021 (13%), Positives = 293/1021 (28%), Gaps = 145/1021 (14%) Query: 193 EAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEE--SRFLID 250 + LA+ L + + + + L+ + E R +ID Sbjct: 26 QGSNDDYSREHVMDLAKLREFLEATQPETVETLALDQDCPKRTQFLHRLDAEIAKRGVID 85 Query: 251 AQLRKAGWQADSKTLRFSKGARPEPGV------NKAIAEWPTGKDETGNQGFADYVLFVG 304 + S L + N A + Q D +F+ Sbjct: 86 VLRKGVKHGPVSLDLFYGTPTPGNTKAAQLHAANIFSATRQLRYSQDETQLALDLGIFIN 145 Query: 305 LKPIAVVEAKR--NNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETS 362 P+A E K V + + R + E L + Sbjct: 146 GLPVATFELKNSLTKQTVNDAVRQYKR------DRSPNEPLFKFGRCMVHFAVDDNEVQM 199 Query: 363 WQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEM 422 GK + +PF N D T + K + L ++ Sbjct: 200 CTHLKGKDSWFLPFNQGWNDGAGNPPNP--------DGLKTDYLWKRI---LTKLGLTDI 248 Query: 423 LGSE--PQKQNQWFADNPGMSELGLRYYQEDAVRAVEK--AIVKGQQEILLAMATGTGKT 478 L + ++ ++ RY+Q DAVR + A+ ++ L+ + G+GK+ Sbjct: 249 LENYAEIVEEKDERGRKKHPKQIFPRYHQLDAVRKLLADAAVKGAGEKYLIQHSAGSGKS 308 Query: 479 RTAIAMMFRLIQSQR-------------------------FKRILFLVDRRSLGEQALGA 513 + + +LI + F ++ + DRR L +Q Sbjct: 309 NSIAWLAHQLISLEDGLPAEASACAAGTAVRSAQAGGRSVFDSVVVITDRRVLDKQIRNT 368 Query: 514 FEDTRINGDTFNSIFDIKGLTDKFPED----STKIHVATVQSLVKRTLQSDEPMPVARYD 569 ++ G + KI ++TVQ+ + R+ Sbjct: 369 IRQFAQVSSVVGAVTGESGSKTQQLSGFLKAGKKIIISTVQTFPFILDAIGDEHRGKRF- 427 Query: 570 CIVVDEAHRGYILDKEQTEGELQFR--------SQLDYVSAYRRILDH----FDAVKIAL 617 I++DEAH +LD RI++ +A A Sbjct: 428 AIIIDEAHSSQGGKTSAKMHMALEDLGEYKTSWEELDAEDKINRIMESRKMLANASYFAF 487 Query: 618 TATPALHTVQIFG------------EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGV 665 TATP T++IFG P + YT + A+ +GF++D + ++ Sbjct: 488 TATPKNKTLEIFGIPGKPVDGKVPYRPFHSYTMKQAIQEGFILDVLAHYTPVNTWSRLAK 547 Query: 666 YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ 725 + + + ++ D +++ F+ V G Sbjct: 548 EVEDDPEFDTKKALKKLRRYVESHDHAIRTK---AEIMVVHFHEQVV----ARRKIGGRA 600 Query: 726 KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQ-------TMI 778 + ++ C + A E + A +++ K + + Sbjct: 601 RAMIICSSIKRAIQYYEAVSAYLRERKSPYHAIVAFSDFEQDGKKITEASLNGFPSSKIE 660 Query: 779 TRFNKERLPNI--------VVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL 830 F + +I ++ D TG D P + + + + S I Q R R Sbjct: 661 EYFKAGEIKDISGKDPYRFLIVADKFQTGYDEPLLHTMYVDKVL-SGIKAVQTLSRLNRA 719 Query: 831 CPEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVELQTLVNEITDSETYKITEADG 888 P+ KT + D ++ T+++ D R V+ + + L + + Y++ + Sbjct: 720 HPQ--KTDTFVLDFMNDADTIKAAFSDYYRTTVLSEETDPNKLHDLKAALDGYQVYSYEQ 777 Query: 889 RSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLRE 948 + L ++ +D+ + + A + AS L Sbjct: 778 VDQLVRLFLDGEDRDNLDPILDVCVGVYNDELDEDGQVDFKGKAKAFTRTYQFLASVLPY 837 Query: 949 KGPHWSAEVF---------------NKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVS 993 W + G + ++ + L +D + Sbjct: 838 TNAEWEKLSIFLNFLIPKLPAPVEQDLSKGILEAIDMDSYRAEVKQMMQLALPDEDAEIG 897 Query: 994 VKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFE 1053 G P+ L+A + L+A +R ++ + +++ Sbjct: 898 PVPTSGGGRKPEPELDALSN----------ILKAFNDRFGNIEWEDADRIRKVITEDIPA 947 Query: 1054 ESSLRKAWKE-TRNEDIAARLIGHIR--RAAVGDALKPFEERVDHA-----LTRIKGEND 1105 + +A++ +N +A + H R V + L E + + Sbjct: 948 KVKEDQAYQNAMKNSSKSAARLEHDRALEKVVIEMLSDHTELFKQFSDNPGFKKWLADTI 1007 Query: 1106 W 1106 + Sbjct: 1008 F 1008 >UniRef50_B8D1X7 Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1X7_HALOH Length = 1010 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 138/965 (14%), Positives = 296/965 (30%), Gaps = 80/965 (8%) Query: 155 EQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAEL 214 + E + + ++L I + L L+ + N + Sbjct: 2 TKNWDEYHRVEKRALNLFERLGYKVFDINKTMERPARNSEHEVLLLDNLKKGIKRINPWI 61 Query: 215 AKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLI--DAQLRKAGWQADSKTLRFSKGAR 272 ++ + L +E L+ + L+ G ++T+++ Sbjct: 62 SENNL-NKAVNMIRPARIKATNLLEANEIIYERLVKHVSVLQDLGQGKKNQTVKYIDFED 120 Query: 273 PEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPA--RLNESYRY 330 P+ + ++ + D V+F+ PI V+E K + ID P + + RY Sbjct: 121 PDNNEFLVMNQYKV---KGRENIIPDIVVFINGIPIGVIECKVDTIDEPEEKAIEQLRRY 177 Query: 331 SKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMK 390 + Y+ + A + ++ + ++FK Sbjct: 178 QNIREYDLEEGAEQLFYTNQVLVAAWKDSASASTIGAPARQFKA---------WKDPYPS 228 Query: 391 TKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQE 450 T I + L + E LL+++ + + + G+ + RY Q Sbjct: 229 TIDNITKLVGEEPTMQDILLYSMFKKERLLDLIQNFIVFER----EGNGIVKKLARYQQY 284 Query: 451 DAVRAVEKAIVKGQ----QEILLAMATGTGKTRTAIAMMFRLIQSQR--FKRILFLVDRR 504 AV + I + + + G+GK+ T + + +L + + +L + DRR Sbjct: 285 RAVCKAVERIKNARKLTERSGTVWHTQGSGKSLTMLFLALKLRRMKELENPTLLIVTDRR 344 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L EQ G F+ +K L +K D+ K + TVQ +R + Sbjct: 345 DLDEQITGTFKKCGF--PNPIRAKSVKDLKEKLRLDAGKTIMTTVQKFQERDNDKYPVLS 402 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP--- 621 ++VDEAHR D + RR L +A + T TP Sbjct: 403 EDTNIFVMVDEAHRTQYKD---------------LAANMRRALP--NACYLGFTGTPIDK 445 Query: 622 -ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG 680 A T++ FG + YT +V DG + ++ + +++ + Sbjct: 446 KARSTIRTFGTYIDTYTIEESVEDGATLPIFYEARLADLRVEGRDLDKLFDRIFKDYTDE 505 Query: 681 EVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD-PTGSQKTLVFCVTNAHADM 739 E + + ++A+ + +C ++ + + K + V+ A Sbjct: 506 EKQKIKEKHATEKDIAE------ASSRIEKICLDIIEHYESKIYPFKAQIVTVSREAAAK 559 Query: 740 VVEELRAA-FKKKYPQLEHDAIIK-ITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLL 796 E L + + D K + + + +I RF ++ D+L Sbjct: 560 YKETLDNLNGPESAVIISGDRTDKGLIKKYITTGDERKELIKRFKDYHDSLKFLIVCDML 619 Query: 797 TTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT 856 TG D P + + ++ L Q R R NK + D ++ L+ Sbjct: 620 LTGFDAPVEQVMYLDKPLKEYNLL-QAIARVNRRYD--NKNFGLVVDYYGVFDHLKEALE 676 Query: 857 MRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDR 916 + + Y+ + +Q + + Sbjct: 677 IFNKKDIENAVTPVKDEKPRLERNYRGVMRLFDGVNMDNLDQCILAFKE----EDQRIKF 732 Query: 917 SETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDIN 976 R +D + D + +L + +K +K+K I+ Sbjct: 733 KNAFKAFARSMDIIMPDPIADPYREDLKKLGKIYKAVRNHYRDKNLNIKGVGDKVKKLID 792 Query: 977 NLNDAPIFLDIDDEV---------VSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA 1027 A + + V ++ + + A + + + PA Sbjct: 793 KHIMATDIKILSEPVSILDEEKFEETINEIRNKETRASEMEHAIRNEISIKIDENPA--- 849 Query: 1028 VINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGH-IRRAAVGDAL 1086 ++ + + ++ + +++ + RN A +G + A+ + L Sbjct: 850 YYQSLKERLEELIERRKQGMLDFAEQIEEMKEIINDIRNVRSKAERLGLNEKEFALYELL 909 Query: 1087 KPFEE 1091 E Sbjct: 910 VDELE 914 >UniRef50_B9MGJ1 EcoEI R domain protein n=4 Tax=Proteobacteria RepID=B9MGJ1_DIAST Length = 827 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 191/916 (20%), Positives = 319/916 (34%), Gaps = 151/916 (16%) Query: 236 RTLNLSEEES-RFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294 LSE + I + +AGW + R + + + + Sbjct: 2 DKTKLSESDICEKFIRPAMEQAGWDGMDQIYREYPLRA-----GRVVVRGRQAQRDKSTV 56 Query: 295 GFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353 ADY LF P+AVVEAK N V A + ++ +Y++ Sbjct: 57 LRADYALFFKANIPLAVVEAKDNQHAVGAGMGQAIQYAELL------------------- 97 Query: 354 EAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTR---NMSKAL 410 +PF +++NG G +RD + L Sbjct: 98 -------------------GVPFSFASNG----------DGFVFRDATLADGVLERNLTL 128 Query: 411 PEWHRPEELLEMLGSEP--QKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEIL 468 E+ P EL + + A RYYQ +AV +AI GQ +L Sbjct: 129 EEFPSPAELWSRYCAWKGWSAEESRIAGFDYAPNKTPRYYQLNAVNRAVEAIAAGQDRVL 188 Query: 469 LAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQAL--------GAFEDTRIN 520 L MATGTGKT TA +++RL +S KRILFL DR L +Q + GA N Sbjct: 189 LVMATGTGKTYTAFQIIWRLWKSGAKKRILFLADRNILIDQTMVNDFRPFKGAMAKLSPN 248 Query: 521 GDTFNSIFDIK-----------GLTDKFPEDSTKIHVATVQSLVKRTLQSD--EPMPVAR 567 + T K + S +I+++ Q++ + + + Sbjct: 249 AKGVERVDAQGAVSVEDVDLAVNKTTKLVDKSYEIYLSLYQAVTGTEEERNIYKQFSPDF 308 Query: 568 YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPALH-- 624 +D IVVDE HRG + SA+R IL +F A +I LTATP Sbjct: 309 FDLIVVDECHRGSAAED----------------SAWRDILTYFAGATQIGLTATPKETKD 352 Query: 625 --TVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEV 682 FGEPVY Y+ + + DG+L V L K R + Sbjct: 353 VSNTDYFGEPVYTYSLKQGIEDGYLAPYKVI----------RVDLDKDTFGWRPTAGMTD 402 Query: 683 INDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS-QKTLVFCVTNAHADMVV 741 + +D+ + AD NR LV+ + V ++T YL T KT+VFC HA + Sbjct: 403 KHGHAIEDRIYTGADMNRKLVLEQRDAVVAAKITEYLKATDRYAKTIVFCEDIDHAARMR 462 Query: 742 EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVD 801 + L A + +++ITGD + ++ I ++ P I T L++TGVD Sbjct: 463 QALSNA-NADLCATQPKYVVQITGDNIEGKLELDNFID--PEKTYPVIATTSKLMSTGVD 519 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT----- 856 + IV + ++S L++Q+ GR TRL ++ KT F I D D Sbjct: 520 AQTCKLIVLDQTIKSMTLFKQIIGRGTRLREDLGKTWFTILDFKRATELFADKDFDGEPV 579 Query: 857 --MRPVVVRPKVELQTLVNEITDSE-------------TYKITEADGRSFAEHSHEQLVA 901 P +P + + + + + + Sbjct: 580 QIYEPGSGQPVAPPEPAMPGDIPGDAGTPGGAANPLDPLDPLNPLGPFAGGGGAGAGPKK 639 Query: 902 KLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKL 961 + + R+R + ++ Q + + E +D +N L + W ++ Sbjct: 640 YVLGNNVTVSVARERVQYLNAQGKLITESLRDYTRINLRKQYDSLDQFLQAWQQ--ADRK 697 Query: 962 PGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNA 1021 + LE + L D +++ + T ++ Sbjct: 698 AVLLQELEGQGVPLEALADEVGKDLDPFDLLLHVAYDQPPLTRRERARRVQK-------- 749 Query: 1022 QPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAA 1081 + V + + RK L L + + + + +K D+ + + +R Sbjct: 750 ----RNVFTQYGPVARKVLDALLDKYADEGIATIESNEVFKLQPFTDLGSP-VELVRSFG 804 Query: 1082 VGDALKPFEERVDHAL 1097 + ++ AL Sbjct: 805 GRPQYLSALQALEQAL 820 >UniRef50_D2LA91 Type I site-specific deoxyribonuclease n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LA91_9DELT Length = 798 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 181/844 (21%), Positives = 295/844 (34%), Gaps = 142/844 (16%) Query: 237 TLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQG 295 + +L+E E+R LID L AGW + K G + Q Sbjct: 6 SHDLNEAETRAELIDPVLAVAGWGIVEGSR---------IRREKITNGRLIGGGKRSKQD 56 Query: 296 FADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADYVL + +AV+EAKR + + ++ RY+ Sbjct: 57 IADYVLVFHGQKLAVIEAKRVGLKDTEGVGQAKRYATMLQ-------------------- 96 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 F YSTNG+ GI+ D+ + + Sbjct: 97 ------------------ARFAYSTNGK----------GIYQIDM--HTGAEGYVSSYPT 126 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSE---LGLRYYQEDAVRAVEKAIVKGQQEILLAMA 472 P++L + ++ FA P + RYYQ +A+ +AI G+ ILL +A Sbjct: 127 PDQLWQSTFAQKNTWRDRFAAIPFEDKGGSWEARYYQHNAINQALEAIAAGRDRILLTLA 186 Query: 473 TGTGKTRTAIAMMFRLIQSQRF-------------KRILFLVDRRSLGEQALGAFEDTRI 519 TGTGKT A + ++L QS+ RILFL DR L QA AF Sbjct: 187 TGTGKTFIAFQLAWKLFQSRWNLKDWKGGGEPSRRPRILFLADRNILASQAYNAFSAF-- 244 Query: 520 NGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP------MPVARYDCIVV 573 D I + I Q+ + + P P +D IV+ Sbjct: 245 PEDALVRISPDAIRKKGMVPKNGSIFFTIFQTFMAGRDAAGNPAPNFGDYPPDFFDFIVI 304 Query: 574 DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPAL----HTVQI 628 DE HRG D+ S +R IL +F AV++ LTATP T Sbjct: 305 DECHRGGANDE----------------SNWREILTYFSPAVQLGLTATPKRKGNVDTYAY 348 Query: 629 FGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLE 688 FG+PVY Y+ + + DG+L + + E V + VI +E Sbjct: 349 FGDPVYVYSLKEGINDGYLTPFKVR----------QIATTLDEYV--YTADDNVIEGDIE 396 Query: 689 DDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAF 748 + + + +DFNR + I R + +D T QKTLVFC T HA V + + Sbjct: 397 EGRRYTESDFNRVIEIAERERYRVKLFMDMIDQT--QKTLVFCATQDHALAVRDCINQTK 454 Query: 749 KKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNI 808 + P I++T + + + + N + +P I+ T L+TGVD ++ NI Sbjct: 455 QNSDPDY----CIRVTANDGSEGERWLRVFQD-NDKTIPTILTTSQKLSTGVDARNVRNI 509 Query: 809 VFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVEL 868 V +R + S I ++Q+ GR TRL K F I+D V Y + + + Sbjct: 510 VLMRPINSIIEFKQIVGRGTRLFE--GKDYFTIYDFVKAYERFDDPEWDG--------DP 559 Query: 869 QTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLD 928 + + + RI + + R+ Sbjct: 560 IEPEPRPPVKPPKECPVCGKLPCECVREPEPCPECGRIPCICGKRVKTKIKLADGKERMI 619 Query: 929 ELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDID 988 + + +G + ++ +LP ++L+ + + L Sbjct: 620 QHMTATTFWSPDG----KPLSAAQFIESLYGQLPELFKDEDELRAIWSKPDTRKRLLQGL 675 Query: 989 DEVVSVKSLYGDYDTPQDFLEA----FDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQ 1044 +E + D ++ + + + V NR + K + Q Sbjct: 676 EEKGFGGEQLAEVSKMIDAEDSDLFDVLAYIAFTLAPISRADRVENRKDHIFSKYSSKEQ 735 Query: 1045 EWFD 1048 ++ Sbjct: 736 QFLA 739 >UniRef50_Q0TN04 Type I restriction-modification system, R subunit n=2 Tax=Clostridium RepID=Q0TN04_CLOP1 Length = 1059 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 142/955 (14%), Positives = 294/955 (30%), Gaps = 152/955 (15%) Query: 195 QTQARLAALEAQLAEKNAELAKQTEQERKAYH---KEITDQAIKRTLNLSEEESRFLIDA 251 + + L L + E+N + A + EI ++ ++L+ F ++ Sbjct: 51 RLRDALKRLNPWMNEENLDRAIRYISRADNLGSGLLEINEKIYDALVDLT-----FTVEQ 105 Query: 252 QLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVV 311 L G Q +T+ F + + ++ G F D V+F+ P+ V+ Sbjct: 106 DLFGNG-QKKPQTVHFIDWNDVDNNDFLVVRQFEVQTLS-GKSIFPDIVIFINGIPVVVL 163 Query: 312 EAKRNNIDV--------PARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSW 363 EAK ++ + RY D Y+ Sbjct: 164 EAKSPFLEKGNNECIGKKQAYEQLRRYMNARDESLGEGAPKLFYTNFFTGILNRYNAYVG 223 Query: 364 QDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRN--MSKALPEWHRPEELLE 421 ++ Y K +V D +N + L + + LL+ Sbjct: 224 TI--------------SSSYNYYLEWKDPYPFKLEEVEDYKNCGQNILLQGFLEKKNLLD 269 Query: 422 MLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ----QEILLAMATGTGK 477 ++ + + A++ + + RY Q AV I G+ + ++ G+GK Sbjct: 270 LMRNFIVFE----AEDGVVIKKVCRYQQFRAVNKALNKIKNGKDKISRGGVVWHTQGSGK 325 Query: 478 TRTAIAMMFRLIQSQRFK--RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD 535 + T + + ++ ++Q I+ + DR L +Q G FE T T I + Sbjct: 326 SLTMVFLARKIKRTQGLTDSTIVIVTDRIDLDKQIAGTFERTLGKITTPVRADTIDKMKK 385 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSD----------------EPMPVARYDCIVVDEAHRG 579 +I + T+Q T + + + + ++ DEAHR Sbjct: 386 LLSNPQPQIIMTTIQKFQSETEEKEVMLDGENLTQKYAVEYPVLSTKQNIIVLADEAHRS 445 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYR 635 D + R+ L +AV I T TP T + FG + + Sbjct: 446 QYKDT---------------AANMRKALP--NAVFIGFTGTPIDKEDKSTPRTFGGYIDK 488 Query: 636 YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEV 695 Y+ + AV DG + R V E++ + + Q + Sbjct: 489 YSIKQAVDDGATVKIV----YEGRRPDLQVIGESLEELFDEAFSDRTDEEKEAIKQKYAN 544 Query: 696 ADFNRGLVIPAFNRAVCNELTNYLDPT---GSQKTLVFCVTNAHADMVVEELRAAFKKKY 752 + + +L + K + CV+ + L K+ Sbjct: 545 KK--TVVESEDRIDEIAKDLLKHYKEQILPNGFKAQIVCVSREACVKYYDALNRHMKEIL 602 Query: 753 PQLEHDAIIKITGDADKD---------ARKVQTMITRFN---KERLPNIVVTVDLLTTGV 800 + +A + +GD + + + +I RF + ++ D+L TG Sbjct: 603 GE-GFEAQVIFSGDNNDKPHLKKHFTTKSEQEKLIKRFKKPINKDKLTFLIVKDMLLTGF 661 Query: 801 DIPSICNIVFLRKVRSRILYEQMKGRATRLC---------------PEVNKTSFKIFDCV 845 D P + R ++ L Q R R + K I D Sbjct: 662 DAPIEQVMYLDRPLKEHTLL-QAIARVNRTSTREVERQLENGEIVKENITKQCGYIVDYY 720 Query: 846 DIYSTLES--VDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKL 903 I + LE + + +P L L NE+ ++ G +++ + LV K+ Sbjct: 721 GISNYLEDALAIFDKEELGKPMESLDDLYNEMLSYRESIMSMFRGVD--KNNLDALVNKI 778 Query: 904 QRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPG 963 + E + + + F+ + P Sbjct: 779 EP-----------------------EDKRAEFELMYRKFSGAVESLLPSHVDTEILNDLK 815 Query: 964 FIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQP 1023 +++ + + +++ D ++V + + + ++E + + Sbjct: 816 WLSYIRAAAKAKFSPSESIDIADCGEKVREIIETHLKSLGVRSWIEPITLFEKDFKDKIN 875 Query: 1024 ALQAVINRPRDLTRK-----GLVELQEWFDRQHFEESSLRKAWKETRNEDIAARL 1073 L++ + + + + E L+K ET+N+ I ++ Sbjct: 876 TLKSDEAQASAMEHAIKHTINIRRKENPVYYASLLE-RLQKILDETKNDWIERKI 929 >UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax=Cyanothece sp. PCC 8802 RepID=C7QWT4_CYAP0 Length = 1005 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 179/746 (23%), Positives = 286/746 (38%), Gaps = 130/746 (17%) Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGNQG 295 + SE +R LID QL KAGW + ++ E P G D G Sbjct: 1 MTRSEATTRKDLIDPQLAKAGWNVND--------------THQVGLEIPVDGYDAQPWNG 46 Query: 296 FADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 DY L+ IAVVEAKR + D + Y + Sbjct: 47 VTDYCLYSPNGDVIAVVEAKRQSRDPRVAEQQVRHYVTEIEK------------------ 88 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 + PF + TNG ++ DV + + + + + Sbjct: 89 ---------------HQSFRPFAFLTNGNIT----------YFWDVEN--SPKRQVAGFF 121 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 +L +L K N + ++ R YQ++A++ V + G + L+ MATG Sbjct: 122 SLRDLENLLYIRQNKINP--STLVVNRQISGRTYQQEAIQRVIERFEDGFRRGLIVMATG 179 Query: 475 TGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLT 534 TGKTRT + ++ LI+S + +LF+ DR L QAL + + + I Sbjct: 180 TGKTRTIMGLIDLLIRSNHLRTVLFVADRDVLVRQALDDNFRVYLPDEPSDRIRSYN--- 236 Query: 535 DKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFR 594 + S +++V T+Q+L K +D I+ DE HR Sbjct: 237 ---IDYSKRLYVGTLQTLTK----CCRNFTPGFFDLIIFDECHRSIY------------- 276 Query: 595 SQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAVIDGF 646 + +R +LD+FD + LTATP +T Q F G P + Y Y+ A+ DG Sbjct: 277 ------NQFREVLDYFDGKILGLTATPATAIDRNTFQAFHCFEGIPTFLYEYQQAINDGN 330 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 L+D Q T +EG+ G ++ + DD D+E + + + Sbjct: 331 LVDYS-LYQAQTHFQREGIR---GANLDEEDRNMLIEQGIDPDDIDYEGTELEKKVSNRD 386 Query: 707 FNRAVCNELTN--YLDPTGS--QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 R E+ + D +G KT++F VT HA L+ F + YPQ + Sbjct: 387 TLRKQWTEIMEVCHKDESGQLPGKTIIFAVTQKHAHR----LKEVFDEMYPQFSEMVQVI 442 Query: 763 ITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 ++ + K + +I +F KE +P I ++VDL+ TGVDIP + N+VF++ V+S I +Q Sbjct: 443 VS-----EMEKTKDLIDKFKKEEMPRIAISVDLMDTGVDIPEVVNLVFMKPVQSFIKLQQ 497 Query: 823 MKGRATRLC---------PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVEL--QTL 871 M GR TR P K F I D + + D + + V+L L Sbjct: 498 MIGRGTRNHEACKYLNRLPNGKKDEFLIIDFWENEFDRDPSDEVISQNLPITVKLFNTRL 557 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELC 931 + + ++ + +E L+ KL I G R I V +D Sbjct: 558 RLLGYYLDNQESSDEQNQDVKGDLYEYLLGKL-NISGRNGQFRTPRHIIRLMVEMVDPKP 616 Query: 932 QDAAGVNFNGFASRLREKGPHWSAEV 957 + G G L + + Sbjct: 617 NERIGDLAAGTCGFLVNSYQYILEKF 642 >UniRef50_B8CZR6 EcoEI R domain protein n=5 Tax=Firmicutes RepID=B8CZR6_HALOH Length = 770 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 189/834 (22%), Positives = 311/834 (37%), Gaps = 123/834 (14%) Query: 238 LNLSEEES-RFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 + L+E E I ++ AGW + + LR E Sbjct: 1 MALTETEVCMRYITPAIQNAGWDINKQVLR-------EYSFTDGRVIVRGKLVNRAKPKR 53 Query: 297 ADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADY+L P+A++EAK++ + + A + ++ Y++ D Sbjct: 54 ADYILQYKSNIPLAIIEAKKDTLPIGAGMQQALEYAEILD-------------------- 93 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 IPF YS+NG+ G D R AL ++ Sbjct: 94 ------------------IPFVYSSNGK----------GFIEHDRNSGREKEIALEDFPS 125 Query: 416 PEELLEMLGSEPQKQNQWFADNPGM-----SELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 PEEL + + + + RYYQ A+ +AI KGQ+ ILL Sbjct: 126 PEELWGRFSKQKEFTREQEQLYLQDYFYQINYKTPRYYQRVAINRAVEAIAKGQKRILLV 185 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDI 530 MATGTGKT TA ++ RL ++ + KRILFL DR L +Q I GD + Sbjct: 186 MATGTGKTFTAFQIIHRLWKAGKKKRILFLADRNILVDQT--------ITGDFSPFGDKM 237 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTL--QSDEPMPVARYDCIVVDEAHRGYILDKEQTE 588 + + +I++A QS+ ++ E +D +V+DE HRG Sbjct: 238 IKIQRGNVSHAHEIYLALYQSMTGPEEWQKTFEEYSPDFFDLVVIDECHRGSARAN---- 293 Query: 589 GELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALH----TVQIFGEPVYRYTYRTAVI 643 SA+R +L++FD A + LTATP T FGEP+Y Y+ + + Sbjct: 294 ------------SAWRVVLEYFDQATHLGLTATPKEDADVSTQGYFGEPIYTYSLKQGIE 341 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV 703 DGFL + ++ G KG+ + + +D+++ V DF+R L+ Sbjct: 342 DGFLAPYKVVRMGLDKDLM-GFRPIKGQTDKY---------GRVMEDREYYVNDFDRELI 391 Query: 704 IPAFNRAVCNELTNYLDPTGS---QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAI 760 + + V E+T YL KT+VFC HA+ + + L + + + Sbjct: 392 LEKRHELVAKEITRYLKEELQDRFAKTIVFCQDIEHAENMRQALVNE-NADLVKQNYKYV 450 Query: 761 IKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 ++ITGD + ++ I E P I T L+TTGVD + IV + S + Sbjct: 451 MRITGDNPEAKIQLDNFIE--PSETYPVIATTSKLMTTGVDAQTCKLIVLDMTINSMSEF 508 Query: 821 EQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSET 880 +Q+ GR TRL P+ K F I D D P E + Sbjct: 509 KQIIGRGTRLRPDYGKYYFTILDFRGATRLFADPDFDG--YPIPDDEDGDNYPGNDVNGG 566 Query: 881 YKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFN 940 +I D E E+ K R + +D + + E D N Sbjct: 567 NRIPGND-----EGGDEEGRVKYYVDDVEVNLINKRVQYLDANGKLVSESYVDYTKKNIR 621 Query: 941 GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDD-EVVSVKSLYG 999 + L + W+ E K L + ++ L DIDD +++ Sbjct: 622 KQYATLDDFIRRWTEE--EKKQVIYDELLEQGIILDELRKEVGKEDIDDFDLICHIVFDA 679 Query: 1000 DYDTPQDFLEAFDS---LVQRSPNAQPALQAVINRPRDLTRKGLVELQ-EWFDR 1049 T + + + A+ L+ ++++ ++ + +++ D Sbjct: 680 KPLTKSERINNVKKRNYFTKYGEQARKVLEILLDKYKNSNITEIEDIKILKLDE 733 >UniRef50_UPI0001C42655 hypothetical protein BpOF4_03725 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42655 Length = 998 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 152/1025 (14%), Positives = 314/1025 (30%), Gaps = 116/1025 (11%) Query: 174 KLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQA 233 AL + E A + +E A +K K+Y +Q Sbjct: 14 IEAALIANGYKKRVLEGEASALFKQYAIDVEELFAFLEDTQSKSLRALEKSYGPNYKEQV 73 Query: 234 IKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEW--------- 284 +KR + + + L++ + G + TL+F+ +P +N+ EW Sbjct: 74 LKRIVEQLKTSKQGLVECLRK--GIKDRGVTLKFA-YHKPATTMNQLTNEWYSKNRFNVA 130 Query: 285 PTGKDETGNQGFADYVLFVGLKPIAVVEAKRN--NIDVPARLNESYRYSKCFDNGFLRET 342 + D VLF+ P+ V+E K N V + + + F Sbjct: 131 RQVYYSDKHNNSVDMVLFLNGLPLIVMELKNPLTNQTVEQAMKQLKFDRDPNERLFKFNE 190 Query: 343 LLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRD 402 + Y P+ + + + +PF G + + Sbjct: 191 RVVVY-----FAVDPDEVFMTTELKKGKTYFLPFNKGNQGGKGNP--------LVYENYR 237 Query: 403 TRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMS------ELGLRYYQEDAVRAV 456 T + + + P+ LL++L + D+ G + + R++Q DAVR + Sbjct: 238 THYLWEEI---LAPDSLLDILFRFVFIKKDDILDSNGDTIEERKMLIFPRFHQLDAVRKL 294 Query: 457 EKAIVKG--QQEILLAMATGTGKTRTAIAMMFRLIQSQR------FKRILFLVDRRSLGE 508 E+ + L+ + G+GKT + + RL + F ++ + DRR L + Sbjct: 295 EEDVKVRLVGHNYLIQHSAGSGKTNSISWLAHRLAKLHDENNESIFSSVIVITDRRVLDK 354 Query: 509 QALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARY 568 Q A I + T+I + T+Q + Sbjct: 355 QLQDAVYQLEHKAGMVERINKDSAQLANAINNETRIIITTLQKFPFIMEKVAGIDRKKY- 413 Query: 569 DCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF------------------ 610 +++DEAH + L+ RI + Sbjct: 414 -AVIIDEAHSSQGGKASTALTNILSDKTLEDAYNEDRIAEENLESLDEQIIETIMKSGKQ 472 Query: 611 -DAVKIALTATPALHTVQIFG--------EPVYRYTYRTAVIDGFLIDQDPPIQIITRNA 661 + A TATP T++ FG + YT R A+ +GF++D Sbjct: 473 DNVSFFAFTATPKPKTLEKFGTLGMDGKPRAFHEYTMRQAIEEGFILDVLQNYTTYKTFW 532 Query: 662 QEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDP 721 + + +V R ++ I + N++ Sbjct: 533 KIAKTIDDDPEVSRKQATKKLAQYVSLHPH-----------SIAQKTEIIIEHYRNFVKR 581 Query: 722 --TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMIT 779 G K +V + HA +K + D + + + Sbjct: 582 KIGGRAKAMVVTASRLHAVRYKIAFDKYIDEKGYDDLKTVVAFSGTVKDGEISYTEPDMN 641 Query: 780 RFNKERLP--------NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 +F+++ LP +++ + TG D P + + + + S I Q R R C Sbjct: 642 KFSEKELPEKFNSDEYKVLLVAEKYQTGFDEPLLHTMYVDKPL-SGIKAVQTLSRLNRTC 700 Query: 832 PEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVELQTLVNEITDSETYKI-TEADG 888 P K + D V+ +++ + + L + + E Y+I TE + Sbjct: 701 P--GKEDTFVLDFVNEQEDIKASFQPYYESTSLSEVTDPNILYDLQGELEPYQIFTEEEV 758 Query: 889 RSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLRE 948 + E + K D+ K++ ++ AA F + + Sbjct: 759 QKVNELELNGGLNKSTSAQTALNAEIDKGVERYKKLSAGEQEAFKAAATKFTRTYGFVLQ 818 Query: 949 KGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFL 1008 ++ L L + + DD + ++ + Sbjct: 819 IATFIDVDL----HKLYIYLNYLLRKLPRDKNDKDVYLADDVALEYYRNQKVFEGSIELE 874 Query: 1009 E--AFDSLVQRS------PNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKA 1060 + + QR + + L +++ + D E FD Q + + Sbjct: 875 KTGGVELDPQRHGAGGAVEDEKTKLSSILEKLNDRFGTEFTEEDLLFDEQVVS-TMTKSE 933 Query: 1061 WKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQA 1120 + R ++ + + + D + E + +I G+ ++ Q ++D++ Sbjct: 934 DVQVRAKNNSYDNFRLAMKERIIDFVIDRMEANEKYTHKILGDQEF---QSYFIDKIIAE 990 Query: 1121 LKEKV 1125 + ++ Sbjct: 991 VYTEI 995 >UniRef50_C1P7N7 Type I site-specific deoxyribonuclease, HsdR family n=4 Tax=Firmicutes RepID=C1P7N7_BACCO Length = 1035 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 123/900 (13%), Positives = 280/900 (31%), Gaps = 99/900 (11%) Query: 261 DSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDV 320 S T+++ E V + E+ + + D VLFV P AV+E K+ +I + Sbjct: 116 KSFTIQYIDWNNIENNVFHVVEEFEVERMDGRGTVRPDIVLFVNGIPFAVIECKKASISM 175 Query: 321 PARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYST 380 +++ R + G L + + ++ ++ + P + + Sbjct: 176 NQGISQMIR-----NQGKDYAPQLFKFVQIVM--------STNKNETKYATCNTPKKFWS 222 Query: 381 NGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGM 440 +E +A + R K + PE LLE+ Sbjct: 223 VWKEEKAEWLQNWLDKTVEGRLPTMQDKNIISLFHPERLLELTQFFTLFDKD-------- 274 Query: 441 SELGLRYYQEDAVRAVEKAIVK-----GQQEILLAMATGTGKTRTAIAMMFRLIQSQR-- 493 + RY Q A++ + K I + +Q ++ G+GK+ T + + ++ R Sbjct: 275 VKKVARYQQYFAIKEIIKTIEERDENGNRQSGVIWHTQGSGKSLTMVMLAKYILSELRGF 334 Query: 494 FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV 553 +++ + DR L +Q F TR+ L D ++ + I V Sbjct: 335 NPKVIVVTDRVELDKQIHKTFSHTRLKAS---RATSGSHLVDLINDNHSDIVTTLVHKFD 391 Query: 554 KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV 613 + + + ++VDE+HR + +++ +A Sbjct: 392 TASSKQKSIESRDIF--VLVDESHRTQYGELHL---------------KMKKVFP--NAC 432 Query: 614 KIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSK 669 + T TP +T+ FG+ +++YT V D ++ +++ ++ + + Sbjct: 433 YLGFTGTPLMKKEKNTLIKFGKLIHKYTIADGVRDKAIVPLLYEGKMVEQSVNQKAIDHR 492 Query: 670 GEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL-----DPTGS 724 E + R +ND +++ + + + + ++ + Sbjct: 493 LEMITR------NLNDKQKEEVKQRWSKYEKLASSEQRIYLIAEDINKHFVENYKTQGSQ 546 Query: 725 QKTLVFCVTNAHADMVVEELRAAFK--------------------KKYPQLEHDAIIKIT 764 K ++ + A +E ++ ++ Sbjct: 547 FKAMLATNSKIEAIRYLEAFEELSDLNCAVVISPPDQREGHEVVDQESKDKVQRFWKRMM 606 Query: 765 GDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMK 824 + + F ++++ VD L TG D P + + ++ L Q Sbjct: 607 DRYGTPEKYEDAIKDEFVNGDELDLLIVVDKLLTGFDAPRATVLYVDKPMKEHTLL-QAI 665 Query: 825 GRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKIT 884 R RL K I D + L+ M + + L I D + + Sbjct: 666 ARVNRLYE--GKDYGLIIDYRGLLDKLDEAMQMYSGAGLENFDPEDLKGAIYDVISVIGS 723 Query: 885 EADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDA-AGVNFNGFA 943 S + K R + E ++ L ++ + Sbjct: 724 LRQYYSDLWQIFAPIKNKNDREEYEVWL--EDEERREEFYGVLSNFGRNLGIALESEKIY 781 Query: 944 SRLREKGPHWSAEVFNKLPGFIARLE-KLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYD 1002 + L + + F ++ + I++ + D ++ + + Sbjct: 782 NTLPPEELQKYKKDFKFFQDLRKSVKLRYSDTIDHKEYEAKMQKLMDNYIAAEEVIRIT- 840 Query: 1003 TPQDFL--EAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKA 1060 P D L +AF+ ++R + + A+ R E + F E +++A Sbjct: 841 NPVDILNAKAFEEELERLESKRAKADAIRTRLTKSIHAKWDE--NPSYYKKFSE-RIQEA 897 Query: 1061 WKETRNEDI-AARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQ 1119 +E +++ I A + ++ ER + + + L + Sbjct: 898 IQEYKDKRISEAEYLNRMKDIMNDYRRGESSERYPEIIKENRNAQAFYGVTKDILSETKE 957 >UniRef50_Q7MPU7 Type I site-specific restriction-modification system, R (Restriction) subunit n=11 Tax=cellular organisms RepID=Q7MPU7_VIBVY Length = 817 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 179/806 (22%), Positives = 300/806 (37%), Gaps = 126/806 (15%) Query: 231 DQAIKRTLNLSEEES-RFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKD 289 K ++ L+E ++ R + +L+++GW+ + + + ++ K Sbjct: 15 TARKKNSMALNEADTCRVYVTPKLKESGWENNPSAITE------QYTFTDGRVQFKGSKV 68 Query: 290 ETGNQGFADYVL-FVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYS 348 + G Q ADY+L + PIAVVEAK N V + ++ Y++ Sbjct: 69 QRGEQKRADYLLKYTRDFPIAVVEAKPENSPVGQGMQQAKDYAEIL-------------- 114 Query: 349 PDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSK 408 + F YSTNG E + T + Sbjct: 115 ------------------------GLKFAYSTNGHEIL------------EFDYTTGEEQ 138 Query: 409 ALPEWHRPEELLEMLGSEPQKQNQWFADNPGM----SELGLRYYQEDAVRAVEKAIVKGQ 464 L + P+EL + L + +++ S RYYQ+ A+ +++++G+ Sbjct: 139 LLSRFPTPDELFKRLCGDEGIKDEDLDTLLSPYHHVSGYSPRYYQQIAINRAVQSVLQGK 198 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQSQRF-------KRILFLVDRRSLGEQALGAFEDT 517 + L+ MATGTGKT A + ++L ++ RILFL DR L + Sbjct: 199 KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVD--------- 249 Query: 518 RINGDTFNS-IFDIKGLTDKFPEDSTKIHVATVQSLVK--RTLQSDEPMPVARYDCIVVD 574 TF + S +I+ A QS+ R + P +D I++D Sbjct: 250 DPKDKTFTPFGDARHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIID 309 Query: 575 EAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPAL----HTVQIF 629 E HRG D S +R IL++F+ A +I +TATP T + F Sbjct: 310 ECHRGSARDN----------------SNWREILEYFEPAFQIGMTATPLREDNRDTYRYF 353 Query: 630 GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLED 689 G P+Y Y+ R + DGFL ++I+ G SKG+ Sbjct: 354 GNPIYTYSLRQGIDDGFLAPYRVH-RVISEVDAAGWRPSKGDVDRF---------GREIP 403 Query: 690 DQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAF 748 D +++ DF R + + A A LT+++ T KT+VFCV HAD + L Sbjct: 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNN-L 462 Query: 749 KKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNI 808 + D + ++T + K + + P I+ T LLTTGVD P+ N+ Sbjct: 463 NSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETST-PVILTTSQLLTTGVDAPTCKNV 521 Query: 809 VFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD-IYSTLESVDTMRPVVVRPKVE 867 V R V S ++Q+ GR TRL + K F I D D + +V Sbjct: 522 VLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYTGSATQNFADPDFDGYPEIEDEVV 581 Query: 868 LQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRL 927 + E+ D E++ AE + E V + R +D ++ Sbjct: 582 IDEDGEEVVDDTL--TPESEVLEVAEETGEYEVNTEGEGADDEEEHEPRKYYVDGGSVKI 639 Query: 928 DELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDI-NNLNDAPIFLD 986 + + ++ K+ + L++LK N L I L+ Sbjct: 640 TSHLVYELDEDGKQL------RVIQYTDYTAEKVKTLFSSLDELKDSWANPLKREEIILE 693 Query: 987 IDDEVVSVKSL-YGDYDTPQDFLEAF 1011 + + + + L T D L+ Sbjct: 694 LQERGIQFEDLVAESGKTDADPLDLL 719 >UniRef50_C5DAW5 Type I site-specific deoxyribonuclease, HsdR family n=4 Tax=Firmicutes RepID=C5DAW5_GEOSW Length = 1003 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 141/1002 (14%), Positives = 313/1002 (31%), Gaps = 95/1002 (9%) Query: 164 TQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERK 223 T+ ++E + GY + + + + + LEA L N L+ +E Sbjct: 3 TEEQLENVVIEYFQELGYNYLPASELK-RDEKEVLLFDRLEAALVRLNPSLSLDVIRE-- 59 Query: 224 AYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAE 283 ++I ++ ++L + ++ R P N + Sbjct: 60 -AIRKIRHFETNDVFTNNKVFHKYLTETVEVAEFVNGETVYHRVRLIDWEVPENNDFLVV 118 Query: 284 WPTGKDETGNQGFADYVLFVGLKPIAVVEAK---RNNIDVPARLNESYRYSK-CFDNGFL 339 E G + D VL+V P+ V E K R +D+ + Y + F Sbjct: 119 NQLEVVEKGQKKIPDIVLYVNGIPLVVFELKSTSREEVDIEDAYKQLKNYMNVHIPSLFY 178 Query: 340 RETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRD 399 L + + K + Sbjct: 179 YNAFLVISDGVKARAGTITAPLDRF------------------------LAWKKIHIEDE 214 Query: 400 VRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQED----AVRA 455 V + R + + + L+++ + N+ +++ Y+Q A+ + Sbjct: 215 VVENRELETLMYGLFNQKRFLDVIKNFTLFTNE--------AKIMAAYHQYYGMKKAIES 266 Query: 456 VEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQ--SQRFKRILFLVDRRSLGEQALGA 513 +A+ K + ++ G+GK+ + + + L++ + I+ + DR L Q Sbjct: 267 TIRAVGKDGRAGVIWHTQGSGKSYSMVFLAGNLVKREELKNPTIVVITDRNDLDGQLFET 326 Query: 514 FE-DTRINGDTFNSIFDIKGLTDKFPE-DSTKIHVATVQSLVKRTLQSDEPMPVARYDCI 571 F + T + + + I +T+Q + + + Sbjct: 327 FSGASEFLRQTPQQAETRSHIKELLENRQTGGIIFSTIQKF----EEETGLLSDRENIIV 382 Query: 572 VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQ 627 +VDEAHR + + + + Y R L +A IA T TP T Sbjct: 383 MVDEAHRSQYGVDPKYDI-VTGEQKYGYAKYLREALP--NATYIAFTGTPIETTDKSTTG 439 Query: 628 IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTL 687 +FG+ + Y AV DG + ++ E ++ + V + + Sbjct: 440 LFGDVIDVYDMTQAVQDGATVKIYYESRLAKVKLDEKKMNEIDQEYWNMQVNEGVDDYIV 499 Query: 688 EDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS---QKTLVFCVTNAHADMVVEEL 744 E Q ++ + + R V ++ ++ + + K ++ + A + +E+ Sbjct: 500 EQSQK-SLSRMEQIIGDKDRIREVVADIISHYEERENLVAGKAMIVAYSRKTAFAMYKEI 558 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDAR---------KVQTMITRFNKERLP-NIVVTVD 794 P + I +T + + F P IV+ VD Sbjct: 559 MRQR----PDWKEKVKIVMTENNQDPEELAKLVGNKQTRKQREKEFKDVNHPFKIVIVVD 614 Query: 795 LLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV 854 + TG D+P++ + + +++ L Q R R+ P KT I D + + L Sbjct: 615 MWLTGFDVPALDTMYIDKPMKAHNLM-QAIARVNRVYP--GKTGGLIVDYIGLKRDLMEA 671 Query: 855 DTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNR 914 Q V E + + + H + R Sbjct: 672 LKTY------TKRDQDKVQENEQARDIALNILEVLRNMFHEFDYSAFFGDSDKKRYEVIR 725 Query: 915 DRSETIDKQVRRLDELC-QDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKT 973 D +E + + +R + + + L K F + FI + + Sbjct: 726 DGAEFVQQTEKRKSLFMTETKKLKDVYKICTGLLSKEQKEEISYFIAVRSFIMKSSRKGA 785 Query: 974 DINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPR 1033 + I +++ ++ + + + + + + + A P N Sbjct: 786 PDLKEVNERISKMLEEAILEDEVMVLTQASSSESFDLLNEENIKKLRALPQKNIAANILM 845 Query: 1034 DLTRKGLVELQEW-FDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEER 1092 + ++ L ++++ K ++ N + + V + L F+E Sbjct: 846 RVLKEKLQDVKKKNMTVSQTFSKRFEKILEKYNNRNDYTDV------YEVFEELIKFKEE 899 Query: 1093 VDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKT 1134 ++ A+ K + E+ ++ D L K +++D++ Sbjct: 900 LEAAIQAGKQL-GLTDEEKAFFDVLGSDPDIKKLMEDEILIK 940 >UniRef50_B8HE51 Type I site-specific deoxyribonuclease, HsdR family n=6 Tax=Actinomycetales RepID=B8HE51_ARTCA Length = 1074 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 148/1012 (14%), Positives = 292/1012 (28%), Gaps = 115/1012 (11%) Query: 140 ENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQAR 199 +T + E E+ A+ ++G Q++T + R Sbjct: 3 AGPIGGSTVTTAPAVTFSEAEWEGMALELLAEPLGWRPMSGQAIAPGTGQRDTWDELLIR 62 Query: 200 ---LAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRF-LIDAQLRK 255 L AL+ + AE +Q E + R N + R ID+ + Sbjct: 63 PRLLTALQKFNPKVPAEYLQQALAEIASPKSNDPITENHRIHNYLVDGYRLSYIDSDGNE 122 Query: 256 AGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR 315 A +P N +A + D VL+ P++++E K+ Sbjct: 123 A--------NPTIHLLSQDPDQNDWLAVNQVTLIQGDYNRRFDIVLYCNGMPVSIIELKK 174 Query: 316 NN---IDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRF 372 DV + + Y + F GF + P + Sbjct: 175 AGSATADVASAHAQLQTYLREFPMGFRFCVFTLASDGIQAKYGTPFTPLNHFSPWNVDDD 234 Query: 373 KIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQ 432 +P + D + AL + E L++ S Sbjct: 235 GLPVA----------------PGYMEDGVAITALETALNGLYNQERFLQLTRSFTAFD-- 276 Query: 433 WFADNPGMSELGLRYYQEDAVRA----VEKAIVKGQQEILLAMATGTGKTRTAIAMMFRL 488 + G+ + + +Q AV +A+ + ++ G+GK+ + Sbjct: 277 --EGSDGLVKRIAKPHQYFAVTKAVGSTVQAVESNGKAGVVWHTQGSGKSMEMELYANLV 334 Query: 489 IQSQRFK--RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF-PEDSTKIH 545 + + K ++ + DR L Q F+ + + ++ I L ++ + I+ Sbjct: 335 ARHPKLKNPTVVVITDRNELDGQLFEGFDRSLLLAESPRQIRKRSELREELSNRTTGGIY 394 Query: 546 VATVQSLVKRTLQSDE-----PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 T+Q + + D + R +VVDEAHR + D Y Sbjct: 395 FTTLQKFGRSKAEKDAGTEHPLLSDRRNIIVVVDEAHRSHYDDL------------NGYA 442 Query: 601 SAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQI 656 R L H A IA T TP +T ++FG+ + Y AV DG + ++ Sbjct: 443 RHLRDALPH--ATLIAFTGTPLSFADRNTREVFGDDIDVYDLTRAVTDGATVPVYFEPRL 500 Query: 657 ITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT 716 I V +Q + G ++DT + VA N P A+ +L Sbjct: 501 IKVGLASEVTEEILDQAADEATLG--LDDTERARLEASVAVVNAVYGAPQRIAALAEDLV 558 Query: 717 NYLDPTG---------SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDA 767 + + K ++ T + + + IK+ Sbjct: 559 AHWEGRRAQMGKFIESPGKAMIVGGTREICAKLYTAIVELRPDWHSDDLAKGKIKVVYSG 618 Query: 768 D-------KDARKVQT----MITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVR 815 D D + + + R + +V+ D++ TG D P + + R ++ Sbjct: 619 DATDVPPVSDHVRRDSANATIKERLKDVDDELELVIVKDMMLTGYDSPPLHTLYLDRPLK 678 Query: 816 SRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEI 875 L Q R R K + + L + + + V+E Sbjct: 679 G-ALLMQTLARVNRTFR--GKKDGLLVAYAPLAENLAQALSEYTKDDQANKPVGRNVDEA 735 Query: 876 TDSETYKITEADGRSFAEHSH--------EQLVAKLQRIIGLATFNRDRSETIDKQVRRL 927 + G + ++ + L Sbjct: 736 IGLTVTLVETLRGLLAGYDWKAVLMRGGPKAFISAATGAANYLRSPETPGNRPAEGEETL 795 Query: 928 DELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDI 987 + +G +A + + K + P+ +I Sbjct: 796 ASKYRRHSGQLSRAWALCSGSETLAELRPEIQVYEETRVYMAKFDAADRQASGEPVPEEI 855 Query: 988 DD-------------EVVSVKSLYGDYD-TPQDFLEAFDSLVQRSPNAQPALQAVINRPR 1033 EV+ + G + D F + Q++ N Q A++A+ Sbjct: 856 QRLLGNLIASATSSGEVLDIYEAAGMPKPSLDDLTPEFIAKTQKARNPQLAIEALRKLIS 915 Query: 1034 DLTRKGLVE--LQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVG 1083 D + +++ + E + ++ + ++ A L+ R A Sbjct: 916 DESAVATRNNVIRQRAFSERITELMKKYTNQQLTSAEVIAELVELAREVAAE 967 >UniRef50_O05052 Putative type I restriction enzyme HindVIIP R protein n=47 Tax=Bacteria RepID=T1RH_HAEIN Length = 1055 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 152/1011 (15%), Positives = 304/1011 (30%), Gaps = 115/1011 (11%) Query: 186 EGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEES 245 EGK + + L + + N +L E + K T I + ++ Sbjct: 32 EGKFARGDLSGVVFVEQLREAVRKLNPQLP---ESAVDSVVKSATKSDIGDLVVRNQTFY 88 Query: 246 RFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF-ADYVLFVG 304 + L D + + K G N+ +A D + FV Sbjct: 89 KLLRDGVRVEYTQNGEQKIEMVRLVDFEHWGNNRFVAVNQLEIRSRKGGKRIPDIIGFVN 148 Query: 305 LKPIAVVEAK---RNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYET 361 P+ V E K R + D+ N+ Y F+ L + Sbjct: 149 GLPLVVFELKNPLRESADLLQAFNQFETYKDEIAELFVYNQALIISDGIVARLGSLSADF 208 Query: 362 SWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLE 421 + +++ D + L +PE+LL+ Sbjct: 209 QRFTPWK----------------VVDEKNKSARLYFDD-----ELQSLLNGLMQPEDLLD 247 Query: 422 MLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI-----VKGQQEILL-AMATGT 475 + + + Y+Q V + KG + I + G+ Sbjct: 248 YIRYFVLFERDSV---GKTIKKIAAYHQYYGVNEAVDSTIWATSEKGDRRIGVMWHTQGS 304 Query: 476 GKTRTAIAMMFRLIQSQ--RFKRILFLVDRRSLGEQALGAFED-TRINGDTFNSIFDIKG 532 GK+ + + +L+ + I+ + DR L Q F + T + D Sbjct: 305 GKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTFSSGKDLIKQTPQQVEDRDQ 364 Query: 533 LTDKFPEDS-TKIHVATVQSLVKRTLQSDEPMPVARYDCIVV-DEAHRGYILDKEQTEGE 590 L ++ + T+Q +S P+ R + IV+ DEAHR ++ Sbjct: 365 LRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERNNIIVISDEAHRSQYGFTQKLHNG 424 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGF 646 Q Y R L +A I T TP T +FG V Y + AV DG Sbjct: 425 KF---QTGYARHLRDALP--NASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQDAVEDGA 479 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 + + + L+K + + ++ + + L Sbjct: 480 TVPIVY-------DDARQIRLNKKDHDALFAEIDALLEEEPSTSLRLR----EKLLGSQE 528 Query: 707 FNRAVCNELTNYLDPTGSQ---KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI 763 + + + K ++ + + ++ A + + ++ IKI Sbjct: 529 RLIELAADFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNQIIALHPEWHSDNINEGAIKI 588 Query: 764 --TGDADK---------DARKVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFL 811 TG A ++ QT+ RF P +V+ D+ TG D P + Sbjct: 589 VMTGSASDTPEMQKHIYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCCNTMYLD 648 Query: 812 RKVRSRILYEQMKGRATRLCPEVNKTS-FKIFDCVDIYSTL--------------ESVDT 856 + ++ L Q R R+ ++ + I D V + L + + Sbjct: 649 KPMKGHNLM-QAIARVNRVFANKSRENGGLIVDYVGLAKELRAATQQYTNSTGKGQLAED 707 Query: 857 MRPVVVRPKVELQ---TLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFN 913 ++ V + K +L+ TL + +T+ + A + + I+ L + Sbjct: 708 VQSVFFKMKEQLEFIRTLFATPIEGKTFDVQAALEKDNPNDLLMAIRFAANHILSLDQLS 767 Query: 914 RDRSETIDKQVRRLDELCQDAAGVNFNGFASR-LREKGPHWSAEVFNKLPGFIARLEKLK 972 D + + + A + G + G E +N+ F + + Sbjct: 768 FDGKAHEQHWFNKKETEPRKKAFLKTAGLVKKGYMLCGTLAEVEPYNQEIAFYDAVRAIL 827 Query: 973 TDINNLNDAPIFLDIDDEVVSVKSLYGDY--------DTPQDFLEAFDSLVQRSPNAQPA 1024 T I + + +++Y + + PQ + ++ P Sbjct: 828 TKREQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQISLLSEEFLQTVKNSPT 887 Query: 1025 LQAVINRPRDLTRKGLV-ELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVG 1083 ++ + + Q E L++A + N ++ + Sbjct: 888 KNLWVSAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYHNHNLTV--------VEIL 939 Query: 1084 DALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKT 1134 D L + L K + E+L++ + L+Q K ++ D+V Sbjct: 940 DELFKMSQDFQERLALGKKL-GLTKEELAFYEALSQNQSAKDLMGDEVLSK 989 >UniRef50_C6Z257 Type I site-specific deoxyribonuclease n=2 Tax=Bacteroidales RepID=C6Z257_9BACE Length = 1042 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 147/1041 (14%), Positives = 332/1041 (31%), Gaps = 127/1041 (12%) Query: 203 LEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADS 262 +A LA A+ ++ + ++ + + + L++ L D + A S Sbjct: 51 RKAMLAINGADKVAAVDEAIRKIREQFSQPLVSANITLTDWLQNGL-DVTFKTAQGSLRS 109 Query: 263 KTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDV-- 320 ++ +W + AD V+F+ PI+VVE K + +V Sbjct: 110 DHIKIIDTDNINNNSFVVANQWTVT--NGKSTKRADIVVFINGLPISVVELKSPSREVTN 167 Query: 321 -PARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYS 379 + Y + F +L + Sbjct: 168 SEEAHQQLQNYMRIVPQLFTACQMLVISDMADTRVGTITAPL------------------ 209 Query: 380 TNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPG 439 + KT G + + + +++++ + Sbjct: 210 ----DRYMEWKTTDGSY--ESTAFADFETFFNGIFEKHRVIDIIANFTLTM-----GGDK 258 Query: 440 MSELGLRYYQEDAVRAVEKAIVKGQQE-----ILLAMATGTGKTRTAIAMMFRLIQSQRF 494 + Y+Q AV+ + + Q + G+GK+ + + +L+++ Sbjct: 259 KIRILAGYHQYFAVKKALECTKQALQRNDGKIGVFWHTQGSGKSLSMVFYAHQLLKNLLS 318 Query: 495 KRILFLVDRRSLGEQALGAFEDT--RINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL 552 +L L DR L +Q F + + S I A +Q Sbjct: 319 ATLLVLTDRLDLNDQLHSTFASCSDYLRQKPIKATDGENLYELLEKRKSHGIIFANIQKF 378 Query: 553 VKRTLQSDEPMPVARYDCIVV-DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD 611 R + + +R D IV+ DEAHR K + + + +L + + R++L + Sbjct: 379 KDR-----DKLITSRSDVIVISDEAHRTQSNTKTKIDTQ-TGELKLGFAAIVRKLLP--N 430 Query: 612 AVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYL 667 A I T TP T ++FG + Y AV DG + +++ + E Sbjct: 431 AAFIGFTGTPIEQDDNDTREVFGNYIDIYDMTQAVEDGATVPVYYESRLVKLDLDEDTLK 490 Query: 668 SKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTG---- 723 ++ ++++ +G D E A L P +C ++ N+ + Sbjct: 491 LLDDEYDKLAEEGADEQDIKRSKS--ENARLRALLSAPQTIDTLCKDIINHYENNRADLL 548 Query: 724 SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT---------GDADKDARKV 774 + K ++ + A + ++L + + + +T D A + Sbjct: 549 TGKAMIVAIDRATGIDIYKKLMELRPQW----KDIICVVMTQGNQDPVEWNDIIGSAARK 604 Query: 775 QTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE 833 + + +F P I + VD+ TG D+PS+ + + ++ L Q R R+ PE Sbjct: 605 EELARQFKDNNSPLKIAIVVDMWLTGFDVPSLATMYVYKPMKGHNLM-QAIARVNRVFPE 663 Query: 834 VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKV------------------------ELQ 869 K+ + D + I L+ + Sbjct: 664 --KSGGLVVDYIGIAKALKKAMHDYTGRDKKNYGDPNIKTTAYQQFVAALKRCRECMNDY 721 Query: 870 TLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRR--L 927 + S + G + LV+ N + + + R+ + Sbjct: 722 DYSSFSDCSNLQRANLIRGGVNVLLDKDNLVSSEPTTQTDENGNIILVDAVPAEARKVFM 781 Query: 928 DELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDI--NNLNDAPIFL 985 +E + + + E+ E L ++ K+ I + Sbjct: 782 EESKRLSQAASLCRSLLTPAERFEEAYFEAVRTLLLRLSGNNKITRKIIDERITQLLKVA 841 Query: 986 DIDDEVVSVKSLYGDYDT--PQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVEL 1043 + +V + + G + ++FL+ + +++ + + + + +K +VE Sbjct: 842 IKAEGIVEILNTKGSEFSLFDENFLKEIAEMKEKNFALELLKRLLEEHIKKYAKKRMVEA 901 Query: 1044 QEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRR------AAVGDALKPFEERVDHAL 1097 +++ + + NE++ L+ + A L E+ AL Sbjct: 902 EKF--SEMLDARLAEYLRGLISNEEVIKELLKMAQELKANAGQASELGLTEEEQAFYDAL 959 Query: 1098 TRIKGENDW--SSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTF----- 1150 T+ + D+ +S+ ++ L +AL+ +D ++ R L + + Sbjct: 960 TKPQAVRDFYENSQLVAMAKELTEALRSSKTIDWRQKESARAKMRSMVKRLLKKYKYPPE 1019 Query: 1151 --DDNLDTLLGKFSDYIWDEL 1169 + L+T++ + ++ + Sbjct: 1020 EQEAALETVIRQC--ELYADS 1038 >UniRef50_Q3J741 Type I site-specific deoxyribonuclease HsdR n=3 Tax=Gammaproteobacteria RepID=Q3J741_NITOC Length = 1042 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 148/985 (15%), Positives = 290/985 (29%), Gaps = 94/985 (9%) Query: 130 VPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQ 189 F+ + + + + +L++ +T A + Q+ + G E Sbjct: 5 PAGFISVRTTTENFGRRLGVFQDELDK-----VETPAIAQLQRLGWRYVRGVELSPEAAG 59 Query: 190 QETEAQTQARLA-ALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFL 248 E L LE + N L+ E+ + +EIT + + + L Sbjct: 60 AERAYYRDVVLVGRLEGAIRRINPWLS---EENLRKVAREITHPNHVGLMEYNHAIYQML 116 Query: 249 IDAQ--LRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLK 306 ++ + G +T++ P + ++ D V FV Sbjct: 117 VNYLSIEQDLGKGRKGQTVKIIDFENPGNNEFLCVNQFKVEGLN--QNIIPDIVCFVNGL 174 Query: 307 PIAVVEAKRNNID--VPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQ 364 P+AV+E K + + + + RY+ + + + Sbjct: 175 PLAVIECKSPYVADAISEGIKQLRRYANLRYPETDEGAQKLFWYNQLMITTCRDQAKVGT 234 Query: 365 DTSGKQRFK-----IPFCYS-------TNGREYRATMKTKSGIW---YRDVRDTRNMSKA 409 +S Q + PF + G +Y + + + Sbjct: 235 ISSSAQHYGEWKDAYPFTDGDIRAHPFSPGGKYEVREMAPPLWYAGEFEQASPVTPQQRL 294 Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQE--- 466 L P L++L + + A + + RY Q A+ V K + G Sbjct: 295 LAGMLDPGNFLDLLQNFTIFE----AVEGRLVKKVARYQQYRAMNKVIKRLKSGTDRKEK 350 Query: 467 -ILLAMATGTGKTRTAIAMMFRLIQSQRFK--RILFLVDRRSLGEQALGAFEDTRINGDT 523 ++ G+GK+ T + + ++ + + +++F+ DR L Q F +T Sbjct: 351 SGVVWHTQGSGKSLTMVMLAVKMRRDPALQQYKLVFVTDRTQLDTQLSNTFR--GAQNET 408 Query: 524 FNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL-QSDEPMPVARYDCIVVDEAHRGYIL 582 + + L DS+ I ATVQ + + + ++ DEAHR Sbjct: 409 VYNAGSVAELKTLLSRDSSDIVTATVQKFQDAEAAGGFKDLNPSGKIIVLADEAHRTQFG 468 Query: 583 DKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQI---FGEPVYRYTYR 639 T A KI T TP L T ++ FG + +Y Sbjct: 469 GLAMTINAALP-----------------KAPKIGFTGTPLLKTQKMDQAFGGYIDQYKIN 511 Query: 640 TAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFN 699 AV DG + I R Q V + + QG + Q + V Sbjct: 512 EAVEDGATVR----IIYEGRQVQSDVVGDSLDALFEAYFQGCSDEEKRAIKQKYGVEWAV 567 Query: 700 RGLVIPAFNRAVCNELTNYLDPT---GSQKTLVFCVTNAHADMVVEELRAA-FKKKYPQL 755 R PA R VC +L + K ++ + A + + L + Sbjct: 568 RE--APARIRWVCIDLLKHYREHIQPNGFKAMIVVGSRHAATVFKQTLDELDAPPSEVII 625 Query: 756 EHDAIIKITGDADKDARKVQTMITRFNK--ERLPN-IVVTVDLLTTGVDIPSICNIVFLR 812 T D + I F K P ++ D+L TG D P + R Sbjct: 626 SGKHNDPATLAQYTDRVHQKQAIQNFTKPLGEDPTAFLIVKDMLLTGFDAPIAQVMYMDR 685 Query: 813 KVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLV 872 ++ L Q R R C K + I D + L + ++Q Sbjct: 686 SLKDHALM-QAIARVNRTC--KGKQAGFIVDYHGLSDDL-----TEALNQFSSEDVQGTY 737 Query: 873 NEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSET-IDKQVRRLDELC 931 + + D + + + R + E + +++D + Sbjct: 738 HTLKDEIPKLKAAHTRVAAIFAGVKGADVDDYVLRLKDEDTRQQFERGFKRFAKQMDVIL 797 Query: 932 QDAAGVNFNGFASRL-------REKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIF 984 D A + R + + + +E+ P Sbjct: 798 PDVAAKPYVPDLKFWGKVQNAARNRYRDPGLNILDAGEKVRKLVEEHIISTGVDPKIPPV 857 Query: 985 LDIDDEVVS-VKSLYGDYDTPQDFLEAFDSLVQRSPNAQPA-LQAVINRPRDLTRKGLVE 1042 + V+ + + A + + P +++ R R++ K + Sbjct: 858 DLMAANFRESVEQIKSPESRASEIESAIKHHLIVNLEEDPEFYKSLSLRLREIIEKTNGK 917 Query: 1043 LQEWFDRQHFEESSLRKAWKETRNE 1067 ++ + ++ K+ +E Sbjct: 918 WEQQLELLLQMVDNIETEHKQAADE 942 >UniRef50_C0QCH5 HsdR2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QCH5_DESAH Length = 1005 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 138/1014 (13%), Positives = 289/1014 (28%), Gaps = 126/1014 (12%) Query: 152 QQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKN 211 Q + ++ + + + + ++ E++ + + L L E N Sbjct: 3 SQTPEYLQSELPAIQLFQKLGYTYLDGSTNEERSSIREVILESRLKGAIKRLNPWLNENN 62 Query: 212 AELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGA 271 A + A ++ I + L+ E + ++D + G + F Sbjct: 63 VNNAFKEITSVVATSLMEANETIHKLLSCQEYTPKQIVDGKETYKG-------VSFIDFE 115 Query: 272 RPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNI--DVPARLNESYR 329 + + + E D V+F+ P+AV+E K + + Sbjct: 116 NIDNNEFLVVNQMKFRGLE--KNSIPDIVVFINGMPLAVIECKSPKALGAETEAIGDLQH 173 Query: 330 YSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATM 389 Y + F + +++ Y Q FK+ Sbjct: 174 YQIQSEKLFKYNQVCV-----GIYKHGGRYGAIGAREEHYQVFKV--------------- 213 Query: 390 KTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQ 449 K + + + L + E L+++ + Q ++ RY Q Sbjct: 214 KDTTALQAILGHEPTPQDILLYSIFKKEYFLDLIRNFVIYQ----VSEGSKIKILPRYQQ 269 Query: 450 EDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQ---RFKRILFLVDRRSL 506 A K + + ++ G+GK+ T + + +L + + + I+ + DR L Sbjct: 270 IRATNKTIKRLQDENKGGVVWHTQGSGKSITMLYLATKLRREESGFKNPTIIIMTDRTDL 329 Query: 507 GEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL---------VKRTL 557 +Q F ++ L +D K T+ +K + Sbjct: 330 DDQISNTFRRCGF--PNPIQATSVRHLKQLLQDDYGKTITTTIHKFQETDEDGNIIKVSN 387 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIAL 617 + E + ++VDEAHR R+ L +A IA Sbjct: 388 EEIEVVSEKENLFVMVDEAHRSQYGF---------------LAGFMRQALK--NAKFIAF 430 Query: 618 TATPA----LHTVQIF--GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGE 671 T TP T+ F G + Y + +V DG + I ++ + + E Sbjct: 431 TGTPIDTEQKSTLGKFYGGGYLDIYNIKQSVEDGATLPILYEDGIPELYVEKELLEKQFE 490 Query: 672 QVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT---GSQKTL 728 E D + E + + + + + ++ K + Sbjct: 491 YYF------EKETDEKKAKLKQEATSLKKYMSGKQRIKRIAEHIIDHYKNKIYPDGYKGM 544 Query: 729 VFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDAR--------KVQTMITR 780 V C A + ++ D D +V+ I Sbjct: 545 VVCYNRPSAIAYKKAFDKLKAAGKHGFSSRVVMSFAPKKDPDEYFKLATPDTEVKQAIED 604 Query: 781 FN----KERLPN-----------IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 F + N +++ D+L TG D+P + + +++ L Q Sbjct: 605 FKLPFGDDTQLNKAGKKQFNNDALMIVSDMLLTGYDVPVAMVMYLDKPLKAHNLL-QAIA 663 Query: 826 RATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETY---- 881 R R K + I D I + L + + P + + EIT Sbjct: 664 RVNRT--RGAKAAGLIVDYCGIANHLVDAMKIFSGDLEPADVMVNISAEITRLRLRHNCL 721 Query: 882 KITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNG 941 D + + + + + + + + + + L+ + D A + + Sbjct: 722 VAFFQDMGIDRKKNRQDYIDRAVHHLEPIDIRDTFKDLLKRFNKSLNIILPDEAALEYKD 781 Query: 942 FASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDY 1001 + + S +K + +++ + DE + K + Sbjct: 782 DFTLYNQIRLEASNAYMDKTLQI------------SKDESKKLQSLIDEHLRAKGITSLL 829 Query: 1002 DTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAW 1061 D P ++ + Q + R L K VEL++ D L Sbjct: 830 DEPVSIID-VEKFQQEIDKTLNPKSKELKRTNRLKHKITVELEKNPDFYQPLSDKLEALI 888 Query: 1062 KETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWS--SEQLSW 1113 K R I + L +E + + + Q+ W Sbjct: 889 KARRENRITQLELFAEYDKIQEKILNKNKEAENLGFQTEREFAVFKTMETQMGW 942 >UniRef50_D1W5U0 DEAD/DEAH box helicase n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5U0_9BACT Length = 786 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 189/833 (22%), Positives = 308/833 (36%), Gaps = 126/833 (15%) Query: 239 NLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 L+EE+ + I + GW DS + + FA Sbjct: 6 ELTEEDVKNRYISEAITSKGWPKDSIFME------QKVRFTDGKISLHGNLVHRERPKFA 59 Query: 298 DYVLFVGL-KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DYVL+ PIA+VEAK N V L ++ Y++ D Sbjct: 60 DYVLYANKATPIAIVEAKDANHSVSHGLQQAKIYAQMLD--------------------- 98 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 + F YS+NG G D + ++ E+ Sbjct: 99 -----------------VKFAYSSNG----------EGFAEHDYLTGKERIFSMEEFPTK 131 Query: 417 EELLEMLGSEPQKQNQWFADN---------PGMSELGLRYYQEDAVRAVEKAIVKGQQEI 467 EEL+E SE N G + RYYQ +A+ AI KGQ + Sbjct: 132 EELIERYKSEANDGNGLNEQELAVIAQPFCTGQNIFPPRYYQRNAINRTVNAIAKGQSRV 191 Query: 468 LLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSI 527 LL MATGTGKT TA +++RL+ S+ K++L+L DR L +Q++ +D + I Sbjct: 192 LLVMATGTGKTYTAFQIVWRLLHSKLKKKVLYLADRNILVDQSIQ--QDFNPLKKVTHKI 249 Query: 528 FDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP---MPVARYDCIVVDEAHRGYILDK 584 K S ++ A Q L+ + + +D ++VDE HRG D Sbjct: 250 DYSKDKNHLEELSSYQVFFALYQQLIGQNDAKNYQELFPNPDYFDLVIVDECHRGSAKDD 309 Query: 585 EQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPALHTVQ----IFGEPVYRYTYR 639 S +R ILD+F A I +TATP Q FGEP+Y Y+ + Sbjct: 310 ----------------SNWRNILDYFSSATHIGMTATPKETKYQSSIGYFGEPIYTYSLK 353 Query: 640 TAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFN 699 + DGFL + + G++ Q ++ + +ED + + +D++ Sbjct: 354 NGIEDGFLAPFKVI----------NITTNIGDEWRPTKGQKDIHGNEIED-RIYNNSDYD 402 Query: 700 RGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 +VI R V E+TNYL T KT+VFC HA+ + L A + D Sbjct: 403 YNIVIEDRIREVAQEITNYLKSTDRMAKTIVFCADETHAERMRMALTNA-NADMCKKNPD 461 Query: 759 AIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRI 818 +++ITG + K+ I+ E+ P I T LL+TGVD IV +++ S Sbjct: 462 YVVRITGSDEYGKSKLDYFIS--VAEKYPVIATTSKLLSTGVDCKMTKLIVLDQQIGSMT 519 Query: 819 LYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTL------- 871 ++Q+ GR TRL + KT F + D ++ + P+ + P + Sbjct: 520 EFKQIIGRGTRLREKEGKTYFTVMDFRNVTRLFADPEWDGPIEIDPNYPPKEKEPTPYLP 579 Query: 872 --VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRR--L 927 NE T + A+ + ++ + R+E+I ++ + Sbjct: 580 PEENEPTGVKEPDPAPQPKPIVAKDGCQVMIINKVVSVYDTDGKLLRTESITDYTKKSII 639 Query: 928 DELCQDA-------AGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLND 980 D + A L+E G +A + + + I Sbjct: 640 DTYATIDTFTSKWQETKKKSDIAEMLKESGIDLAALKHTENMDDVDDFD-FICHIAYGKK 698 Query: 981 APIFLDIDDEVVSVKSLYGDYDTPQDFLEA-FDSLVQRSPNAQPALQAVINRP 1032 + ++V + + LEA D ++ + +L + N P Sbjct: 699 TLTRHERAEQVKKRDIFNKYGEQARSVLEALLDKYIKEGISELESLTVLENDP 751 Score = 45.1 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 92/303 (30%), Gaps = 18/303 (5%) Query: 870 TLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDE 929 L++ D + K+ D + + +Q++ + R+ R + Sbjct: 495 KLLSTGVDCKMTKLIVLDQQIGSMTEFKQIIGRGTRLREKEGKTYFTVMDFRNVTRLFAD 554 Query: 930 LCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDD 989 D + + +E P P + + + + I + Sbjct: 555 PEWDGPIEIDPNYPPKEKEPTP--YLPPEENEPTGVKEPDPAPQPKPIVAKDGCQVMIIN 612 Query: 990 EVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDR 1049 +VVSV G + + + + + ++ ++ +K ++ E Sbjct: 613 KVVSVYDTDGKLLRTESITDYTKKSI---IDTYATIDTFTSKWQETKKK--SDIAEMLKE 667 Query: 1050 QHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSE 1109 + A K T N D I A G ER + R + + Sbjct: 668 SGID----LAALKHTENMDDVDDF-DFICHIAYGKKTLTRHERAEQVKKRDIFNK-YGEQ 721 Query: 1110 QLSWLDRLAQALKEKVVLDDD---VFKTGNFHRRGGKAMLQRTFDDNLD--TLLGKFSDY 1164 S L+ L ++ + + + V + F + G KA + + F + + Y Sbjct: 722 ARSVLEALLDKYIKEGISELESLTVLENDPFRKLGSKANIVKFFGGKQGYLDAVKELEQY 781 Query: 1165 IWD 1167 I++ Sbjct: 782 IYN 784 >UniRef50_C8NQU2 HsdR family type I site-specific deoxyribonuclease n=6 Tax=Corynebacterineae RepID=C8NQU2_COREF Length = 1065 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 148/1011 (14%), Positives = 286/1011 (28%), Gaps = 123/1011 (12%) Query: 146 EVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEA 205 + + E V ++ + + + E + LAAL Sbjct: 4 QTSFSEADWEALVLDQLGENSWLPVHG-----DDIAPGTGERDSWDELLIRPRLLAALRR 58 Query: 206 QLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTL 265 + + +Q E A + R + + R L G + TL Sbjct: 59 LNTQVPDQYLQQALAEIIAPSSQDAITENHRIHKMFVDGHRI---TYLDADG-TEHNPTL 114 Query: 266 RFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNN---IDVPA 322 R + N +A + + D VL+ P++++E K+ DV A Sbjct: 115 RIIGTEEID---NDFLAVNQVPLVQGDYRRRFDVVLYCNGMPVSIMELKKAGSHTADVAA 171 Query: 323 RLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNG 382 + Y + F F + P + P Sbjct: 172 AHAQLQTYLREFPLAFRFCVFTFASDGLDAKYGTPFTPLNHFSPWNVDDDGAPVPAGHT- 230 Query: 383 REYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSE 442 D + A+ + P L++L S A G+ + Sbjct: 231 ---------------LDGEAVLPIETAIAGLYNPTRFLQLLRSYTAFD----AGAEGLVK 271 Query: 443 LGLRYYQEDAVRA----VEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQ--RFKR 496 + +Q AV A+ + ++ G+GK+ +++ + Sbjct: 272 RIAKPHQYFAVTKAVGSTIDAVRTNGKAGVVWHTQGSGKSMEMELYTAAVMRHPVLKNPT 331 Query: 497 ILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE-DSTKIHVATVQSLV-- 553 ++ + DR L Q +F +++ DT I L ++ + I+ T+Q Sbjct: 332 VVLVTDRTELDGQLYSSFARSQLLPDTPKQISKRAELREELTSRGTGGIYFTTLQKFSLT 391 Query: 554 --KRTLQSDEPMPVAR-YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF 610 ++ ++ P+ R ++VDEAHR + D Y R L Sbjct: 392 QVEKDSGTEHPLLSDRKNIIVIVDEAHRSHYDDL------------DGYARHLRDALP-- 437 Query: 611 DAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVY 666 +A IA T TP +T +FG+ + Y AV DG + ++I +GV Sbjct: 438 NATLIAFTGTPISFEDRNTRDVFGDYIDIYDLSRAVDDGATVPVYFEPRLIKVQLADGVT 497 Query: 667 LSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS-- 724 + + G I D +Q A N P + +L + + Sbjct: 498 EDDLDTAADEATTGLGIEDRARIEQ--SAAVVNAVYGAPDRLAILAQDLVTHWEQRHRAV 555 Query: 725 -------------QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA 771 K L+ T + + + + IK+ Sbjct: 556 APFIADPDGAPTFGKALIVGATREICANLYTAITTLRPDWHSEEIDKGKIKVVYSGSASD 615 Query: 772 RK-----------VQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRIL 819 T+ R E +V+ D++ TG D P + + R ++ L Sbjct: 616 TPPVADHVRRQSANNTIKERLKDPEDELELVIVKDMMLTGFDSPPLHTLYLDRPLKG-AL 674 Query: 820 YEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSE 879 Q R R KT + + L + + + ++E Sbjct: 675 LMQTLARVNRTFR--GKTDGLLVAYAPLADNLAKALAEYSNTDQARKPVGKNIDEAAAMV 732 Query: 880 TY-----KITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDA 934 T + AD A + + L + G + RD + + E Sbjct: 733 TVLVGRLRELLADHDWQAVLNQPGPKSFLNAVTGTVNYLRDPATPGNAAAEDDSETLAAR 792 Query: 935 AGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLND-------------- 980 A E + + + Sbjct: 793 YRNTAGQLARAWALCTGSGQLEDLRPEIQVYEEIRVWMGKYDAQDRASRGEPVPEDVQRM 852 Query: 981 -APIFLDIDDEVVSVKSLYGDYDTP----QDFLEAFDSLVQRSPNAQPALQAVINRPRDL 1035 + D V +Y P D F + Q++ N Q A++A+ + Sbjct: 853 LGQLIATATDATGEVLDIYEAAGMPHPSLDDLTPEFIARTQKARNPQLAIEALRALISEE 912 Query: 1036 TRKGLVE--LQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGD 1084 +R+ +++ + E R ++ + ++ A L+ + A Sbjct: 913 SRRSTRNNAIRQRAFSERITELMNRYTNQQLTSAEVIAELVALAKEVAQES 963 >UniRef50_B8EIX1 Putative uncharacterized protein n=1 Tax=Methylocella silvestris BL2 RepID=B8EIX1_METSB Length = 976 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 121/795 (15%), Positives = 247/795 (31%), Gaps = 83/795 (10%) Query: 197 QARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL--SEEESRFLIDAQLR 254 + A L + A + +A+ + A ++ L E R +ID Sbjct: 49 KDYDRAWTVDLVQLRAFVGSTQRPLVEAFDLDNDSPARQKFLARLQGEIGKRGVIDVLRH 108 Query: 255 KAGWQADSKTLRFS------KGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPI 308 A A L + A +N+ D LF+ PI Sbjct: 109 GAKHGAHDVDLFYGTPSPGNAKAAERFALNRFSVTRQLRYSRDDTAHALDLALFINGLPI 168 Query: 309 AVVEAKR--NNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDT 366 A E K V + + R + F Sbjct: 169 ATFELKNSLTKQTVEDAVEQYKRDRDPREKLFE------FGRCIVHLAVDDAQVKFCTQL 222 Query: 367 SGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSE 426 GK + +PF N T T + K + P L +++ + Sbjct: 223 KGKASWFLPFNKGWNDGAGNPPNPT--------GIKTDYLWKDI---LTPLSLTDIIENY 271 Query: 427 --PQKQNQWFADNPGMSELGLRYYQEDAVRAVE-KAIVKG-QQEILLAMATGTGKTRTAI 482 ++ + +L R++Q D VR + A KG + +L+ + G+GK+ + Sbjct: 272 AQIVERKDPKTNRTKRDQLFPRFHQLDVVRKLLADAKAKGAGRRVLIQHSAGSGKSNSIA 331 Query: 483 AMMFRLIQSQR-----FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 + +L++ F ++ + DRR L +Q + G T L Sbjct: 332 WLAHQLVRLANGGGQVFDSVVVVTDRRILDQQIRDTIKQFAQVGATVGHAEHSGDLRRFI 391 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGY-----------ILDKEQ 586 + KI + TVQ R+ I++DEAH + E Sbjct: 392 ADG-KKIIITTVQKFPFILDDIGAQHKDRRF-AILIDEAHSSQGGKAAAALNAALTGAED 449 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGE-----------PVYR 635 + +++ + R++L +A A TATP T++IFGE P + Sbjct: 450 GNEDETVEDKINAIMEQRKMLP--NASYFAFTATPKNKTLEIFGEPFPEGDVVKHRPFHS 507 Query: 636 YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEV 695 YT + A+ +GF++D + + + + + + ++ +D Sbjct: 508 YTMKQAIQEGFILDVLRYYTPVNSYYRLVKTVDEDPEFDTKRATRKLRRYVESNDHAI-- 565 Query: 696 ADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQL 755 L ++ G + +V A + + A ++ Sbjct: 566 -----RLKAEIMVDHFHEQVLALNKIGGQARAMVVTSGIERAIQYYQAVSAYLVERKSPY 620 Query: 756 --------EHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICN 807 EH+ +A + + ++ + + ++ D TG D P + + Sbjct: 621 RAIVAFSGEHEFCGVKVSEASLNGFPSKDIVDQIETDPY-RFLICADKFQTGYDQPLLHS 679 Query: 808 IVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT--MRPVVVRPK 865 + + + S I Q R R P+ K + D ++ T+ + R ++ + Sbjct: 680 MYVDKAL-SGIKAVQTLSRLNRAHPQ--KYDTFVLDFMNDTETIRASFDKFYRTTILSDE 736 Query: 866 VELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVR 925 + L + + Y++ + + + Q L ++++D+ + Sbjct: 737 TDPNRLHDLKATLDGYQVYDPAQIDQLVGLYLSGADRDQLDPILDACVTTYNDSLDEDGQ 796 Query: 926 RLDELCQDAAGVNFN 940 + A + Sbjct: 797 VDFKGKAKAFARTYA 811 >UniRef50_A6EUB1 DEAD/DEAH box helicase n=3 Tax=Bacteria RepID=A6EUB1_9BACT Length = 1005 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 146/991 (14%), Positives = 309/991 (31%), Gaps = 111/991 (11%) Query: 204 EAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLR---KAGWQA 260 + L+ K+ E+ + K++ ++ ++R E + R +D + G + Sbjct: 40 DEILSFLQISQPKKWEKISAIHGKDVENRVLQRL--YKELDLRGALDVLRKGFVDYGVRF 97 Query: 261 DSKTLRFSKGARPEPGVNK---AIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR-- 315 + + G P+ ++ + N+ D VL + P+A +E K Sbjct: 98 QMAYFKPASGLNPDAVAMYNSNSLKVYRQIYYSKKNKNSVDIVLGLNGLPLATLELKNQF 157 Query: 316 NNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIP 375 +V + + F + G + F +P Sbjct: 158 TGQNVNHAKKQYKDTRDPKELLFS-----FKKRALVHFSIDSDEVFMATKLEGSKTFWLP 212 Query: 376 FCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFA 435 F + K+ T + + + + L++L Q + Sbjct: 213 FNQGNGNGKGNPINKSGDY-------RTAYLWNYI---LQKDSWLQILQQFIHLQTEEVI 262 Query: 436 DNPGMSE----LGLRYYQEDAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLI 489 N + + + RY+Q DAVR + +K + L+ + G+GK+ + + +RL Sbjct: 263 SNGKIYKKEKMIFPRYHQLDAVREITDDTLKNGAGKNYLVQHSAGSGKSNSIAWLAYRLT 322 Query: 490 QSQR------FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTK 543 F ++ + DRR L +Q I + T Sbjct: 323 SLHNTSNERIFDSVIVVTDRRVLDQQLQNTIYQFEHKQGVVQKIDKDSKQLADAISNGTN 382 Query: 544 IHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAY 603 I + T+Q + E R +++DEAH + + E+ + + +A Sbjct: 383 IIITTLQKFPYVIDKVGE--IPNRKYAVIIDEAHSSQGGEASKKMKEVLGVVEDEESTAQ 440 Query: 604 RRILDHF-----------------------------DAVKIALTATPALHTVQIFG---- 630 ++ + A TATP T+Q+FG Sbjct: 441 EPYPNYGEGNDDETILGQDIVNSCIEKSALARGQQTNVSFFAFTATPKYKTLQVFGAKDE 500 Query: 631 ----EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDT 686 +P + Y+ R A+ +GF++D + + Q+ + + Sbjct: 501 EGKPKPFHLYSMRQAIEEGFILDVLKNYTTYELYFRLTKAIEDDPQLNKKKTAKAIGKYV 560 Query: 687 LEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRA 746 + ++I F V ++ G K +V C + HA EE + Sbjct: 561 SLHPHNLAQKT---EIIIEHFRSIVSKKI------GGKAKAMVVCGSRLHAKRYFEEFKK 611 Query: 747 AFKKKYPQLEHDAIIKITG---DADKDARKVQTMITRFNKERLP--------NIVVTVDL 795 K+K Q E I+ +G D + ++ + F ++ LP I++ D Sbjct: 612 YIKEKKYQNELKVIVAFSGKLKDDNYPDGVSESELNGFKEKELPQMFEKEEYKILIVADK 671 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVD----IYSTL 851 TG D P + + +K+ S + Q R R+C K + D + I+ + Sbjct: 672 YQTGFDQPLLHTMYVDKKL-SGVKAVQTLSRLNRMC--AGKEDTFVLDFANDRETIFQSF 728 Query: 852 ESVDTMRPVVVRPKVE-LQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLA 910 + + V + L L + D + Y E D + + + L Sbjct: 729 QPYYEITTVTDETDINHLYDLKARLDDFQVYWQEEIDEFANVYFHPNTNLNNAKNQKYLY 788 Query: 911 TFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEK 970 +F E + + + ++ S L + P AE F K F L+ Sbjct: 789 SFTDPSVERFKELETEEKQDEFKKSIRSWTNLYSFLAQIMPFVDAE-FEKFYAFAKLLQT 847 Query: 971 LKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTP-----QDFLEAFDSLVQRSPNAQPAL 1025 + + ++ E ++ + + ++ ++R+ + L Sbjct: 848 RLPKRDLSETFQLSDEVALEYYRLEKIKEGSIDLLKGEEGELSGTTEAGLKRTKEEEALL 907 Query: 1026 QAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDA 1085 +++ D E + F Q E + ++ + + Sbjct: 908 SEIVSVLNDRFGTEFEEADKLFFDQIEAELMEDEKLQKQAKANKMDTF-KYAFEDMFMTK 966 Query: 1086 LKPFEERVDHALTRIKGENDWSSEQLSWLDR 1116 L ++ +I + + + + Sbjct: 967 LIGRMDQNQDIFEKILEDKMFGDLVKELMMK 997 >UniRef50_B3H2F8 Type I restriction enzyme R protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B3H2F8_ACTP7 Length = 787 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 179/856 (20%), Positives = 311/856 (36%), Gaps = 112/856 (13%) Query: 239 NLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 +SE + R I ++ AGW + +S + I + T A Sbjct: 9 QMSEADIRSKFITPAIKNAGWSDRHISEEYSFKVDKPFTDGQMIVDPKTKLASRKEAKRA 68 Query: 298 DYVLF-VGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DY+L+ IAVVEAK L ++ Y++ Sbjct: 69 DYILYQSKNHKIAVVEAKDYKHSPRDGLQQAMDYARDL---------------------- 106 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 F YS+NG E+ D + + ++ P Sbjct: 107 ----------------GASFAYSSNGDEF----------VEHDFITGVQRTLPMSQFPTP 140 Query: 417 EELLEMLGSEPQKQNQWFADNP-----GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 +EL E + + P + RYYQE+A+ +A+ KG+ ILL M Sbjct: 141 QELSERWSKQYTPEELKIIQQPYYTSASDNFKEPRYYQENAINLTIEAVAKGRNRILLVM 200 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQ-ALGAFEDTRINGDTFNSIFDI 530 ATGTGKT TA ++ RL S +++LFL DR L +Q F+ + + Sbjct: 201 ATGTGKTYTAFQIIHRLKASGAKRKVLFLADRNVLVDQPMTQDFKPFK---------DKM 251 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTL-QSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 +++K + S ++++A Q L T + + + +D I++DE HRG + Sbjct: 252 VKVSNKKLDSSFEVYLALYQQLDGETDNELFKQFQPSFFDLIIIDECHRGSAKED----- 306 Query: 590 ELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA----LHTVQIFGEPVYRYTYRTAVID 644 S +R IL++F+ A I +TATP + FG+P+Y Y+ + ++ D Sbjct: 307 -----------SNWRAILNYFNEATHIGMTATPKETADASNISYFGDPIYTYSLKQSIED 355 Query: 645 GFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVI 704 GFL I++ +G +KG GE++ D L + + DF+ +++ Sbjct: 356 GFLAPYRV-IRVDLDCDLKGWRPTKG----LTDKNGELVEDRL-----YTIKDFDYNIIL 405 Query: 705 PAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI 763 V +T +L T KT+VFC HA +V EL I +I Sbjct: 406 NDRTCLVAERITEFLKKTNRLDKTIVFCANINHAQRMVAELSR-LNADMLAKNPKYIRQI 464 Query: 764 TGDADKDARKVQTMITRFNKER-LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 TGD ++ N+ P I VT L+TTGVD + +V ++S ++Q Sbjct: 465 TGDQTGKNDDLEAFCDVQNEGNAYPVIAVTSKLMTTGVDSKTCKLVVLDANIQSMTEFKQ 524 Query: 823 MKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYK 882 + GR TRL + K F I D + V ++ ++ ++E Sbjct: 525 IIGRGTRLRTDAGKEFFTILDFRGVTRLFADPAFDGDPVAILELPENKPFDDKENNEKNN 584 Query: 883 ITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQ-----VRRLDELCQDAAGV 937 T E E A + L D + + +D Q Sbjct: 585 RTSKPTDQVKEDGGEYKPAIVVEAGSLKLRILDEKVQYLNEQGELVLEDIDIFSQREIRK 644 Query: 938 NFNGFASRLRE-KGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDD-EVVSVK 995 +F+ + + F ++ L K + +D I + ++ K Sbjct: 645 DFSSYEQFQQSWTTSGEIFLKFYTDEKWLNSLRKKNQFGSQFDDYDIIRKVAYGKMPMTK 704 Query: 996 SLYGDYDTPQDFLEAFDSLVQRSPNAQPAL--QAVINRPRDLTRKGLVELQEWFDRQHFE 1053 + D+L + + L + V + +DL++ L++ ++ Sbjct: 705 QERIEKAKKSDYL---AQYSEENRQVLGLLLDEYVKSGTKDLSKTELLQTPKFRTFGGLL 761 Query: 1054 ESSLRKAWKETRNEDI 1069 + KE + + Sbjct: 762 PILNKFGGKELYRKAV 777 >UniRef50_C7P6A6 Type I site-specific deoxyribonuclease n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P6A6_METFA Length = 816 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 200/948 (21%), Positives = 369/948 (38%), Gaps = 157/948 (16%) Query: 238 LNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 + LSE ++R + +L++ GW ++ + + + F Sbjct: 1 MPLSEADTREKFVIPKLKEYGWTEENIIREYKIKSDRFYVKGEDYEII------KSPNKF 54 Query: 297 ADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 AD VL V + VVE KR +I L ++ Y+K D Sbjct: 55 ADIVLKVNNIIVGVVEVKREDIPADKGLPQAIDYAKRLD--------------------- 93 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 +P Y+TNG+E ++ + + P Sbjct: 94 -----------------VPIAYTTNGKEIII------------YDRRIPKTERVDNFLSP 124 Query: 417 EELLEMLGSEPQKQNQWFADNP----GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMA 472 +EL ++ +++ + LR YQE A++ V +A++KGQ+ ILL MA Sbjct: 125 KELYQIYKEWKGLEDKNLSPLEYPYYNDPTKKLRSYQETAIKRVIEAMLKGQKRILLTMA 184 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKG 532 TGTGKT T+ ++++LI+S R+LFL DR L +QA A+E + Sbjct: 185 TGTGKTFTSFQIVWKLIKSGFISRVLFLTDRIFLRDQAYEAYEPFK---------GARFK 235 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQ 592 + + +I+ +T Q+L T + +P +D I++DE HR Sbjct: 236 IESGKFNKNRQIYFSTYQTLY--TDNFYKQIPEDFFDLIIIDECHRSRYGR--------- 284 Query: 593 FRSQLDYVSAYRRILDHF-DAVKIALTATPALHT----VQIFGEPVYRYTYRTAVIDGFL 647 + I++HF DA + +TATP + FGEPV+ Y+ A+ DG+L Sbjct: 285 ----------WGEIVEHFKDAYHLGMTATPRREDNIDVYEYFGEPVFEYSLAQAIEDGYL 334 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAF 707 + +I+T EG+ +S+ E++ E+ + L+D + ++F R + +P Sbjct: 335 VPYKI-YKILTNIDIEGLDISQAEEI---IYDDEINPENLKDF--YLPSEFERTISLPDR 388 Query: 708 NRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD 766 R +C +L N ++ T + KT++FCV HA++V + + +KI + Sbjct: 389 TRKMCEKLLNIMNKTDKKAKTIIFCVDTEHAEIVKNTINQLTN------NENFAVKIVHE 442 Query: 767 ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 D I R ++ P + TVDLL+TGVDIP + NIVF+R + SR+L++Q+ GR Sbjct: 443 DKNDLE-----IFRDSESNYPIVATTVDLLSTGVDIPDVKNIVFMRPISSRVLFKQIIGR 497 Query: 827 ATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEA 886 +RL F+I D + ++ D +P ++ + + N+I Sbjct: 498 GSRLANNKG--FFRIIDFTNATRLIDEWDIPKPPKLKVEEIPEEPYNKIIKGYVIDKDTK 555 Query: 887 DGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRL 946 + A+++ IG ++ +++ L ++ +G+ Sbjct: 556 EPI---------FDARVKIKIGRFEKETYTNKYGYFELKELPSNPLLNIIISKDGYVPLR 606 Query: 947 REKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQD 1006 R+ P+ F P + I I ++++ G + + Sbjct: 607 RKVAPNEENYFFELKPIKKKPKKITVRGIVVEIAEEIEVEVN----------GTNVSYAE 656 Query: 1007 FLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKA--WKET 1064 + + + + L+ V + K E + + + +R E Sbjct: 657 YKRYVKENIVKEIHTLEDLKDVW-----INDKKRKEFLDKLKEKCIDIDLIRDLEDMDEV 711 Query: 1065 RNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRI-----KGENDWSSEQLSWLDRLAQ 1119 DI A L+ L +RV++ + + K D LS L++ + Sbjct: 712 DGFDIMAHLV-------FDVPLLTRNDRVNYFINKHLYKIDKYGRDIRDIVLSMLEKYKR 764 Query: 1120 ALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKFSDYIWD 1167 + L V T + R+G L+ N+ + + I++ Sbjct: 765 GGIDN--LSPKVLLTQDMKRKGALNKLKAKVK-NIPQFINEIKSNIYE 809 >UniRef50_Q6ZE43 Type I site-specific deoxyribonuclease chain R n=3 Tax=Bacteria RepID=Q6ZE43_SYNY3 Length = 989 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 127/904 (14%), Positives = 268/904 (29%), Gaps = 111/904 (12%) Query: 275 PGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR--NNIDVPARLNESYRYSK 332 N D +F+ PIA E K V + + R Sbjct: 117 FSNNIFSVTRQLRYSSVETALSLDMAVFINGLPIATFELKNRLTKQTVLDAVEQYQRDRD 176 Query: 333 CFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTK 392 + LL+ +GK + +PF N Sbjct: 177 PKE------LLLQFGRCAVHFAVDDHEVRFCTHLTGKGSWFLPFNKGHNDGAGNPPNP-- 228 Query: 393 SGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSE--PQKQNQWFADNPGMSELGLRYYQE 450 + T + K + E L ++L + ++ + ++ RY+Q Sbjct: 229 ------NGIATDYLWKEV---LTKEGLTDILENYAQIVEEKDEKTCRKKLKQVFPRYHQL 279 Query: 451 DAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLIQSQR-----FKRILFLVDR 503 VR + + + L+ + G+GK+ + + +L+ ++ F I+ + DR Sbjct: 280 TVVRQLLATAKQDGVGKRYLIQHSAGSGKSNSIAWLAHQLVGLEQDGKALFDSIIVVTDR 339 Query: 504 RSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM 563 + L Q + T L + K+ + TVQ + + Sbjct: 340 QVLDRQIRNTIKQFAQVSATVGHAERSGDLRQFIKDG-KKVIITTVQKFPFILNEIGDEH 398 Query: 564 PVARYDCIVVDEAHRGYILDKEQTEGELQ----------FRSQLDYVSAYRRILDHF--- 610 +++ IV+DEAH + + RIL+ Sbjct: 399 RQSKF-AIVIDEAHSSQGGKTTAAMNRVLEGTASYNVANEEEEETTEDKINRILEGRKMV 457 Query: 611 -DAVKIALTATPALHTVQIFGEP------------VYRYTYRTAVIDGFLIDQDPPIQII 657 +A A TATP T++IFG+P + YT + A+ +GF++D + Sbjct: 458 TNASYFAFTATPKNKTLEIFGQPAPQPDGTVKHYPFHSYTMKQAIQEGFILDVLKSYTPV 517 Query: 658 TRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTN 717 + + + Q ++ ++ N Sbjct: 518 ESYYRLAKTVEDDPLFDAKKAQKKLRRYVESHQHAIREK-------TEIMVDHFHTQVIN 570 Query: 718 YLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTM 777 + G + +V A + +++ AI+ +G+ D +KV Sbjct: 571 HGKIGGQARAMVITNGIGQAIQYFYAFKDYLRERKSPY--QAIVAFSGEYDYGGQKVTEA 628 Query: 778 ---------ITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 IT +E ++ D TG D P + + + + S I Q R Sbjct: 629 TLNGFPSSQITDKIEEDPYRFLIVADKYQTGYDQPLLHTMYVDKAL-SGIKAVQTLSRLN 687 Query: 829 RLCPEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVELQTLVNEITDSETYKITEA 886 R P+ K + D + T++S R ++ + + L + D +++++ Sbjct: 688 RAHPQ--KYDTFVLDFYNDSGTIQSSFDPYYRTTILSNETDPNKLHDLKADLDSHQVYTQ 745 Query: 887 DGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRL 946 + + + + + L + +D+ + + A + AS L Sbjct: 746 EQIQYLVELYLNGADRDRLDPVLDACVAAYNADLDEDGQVDFKGKAKAFVRTYGFLASIL 805 Query: 947 REKGPHWSA---------------EVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEV 991 W + + G + ++ + I L +D Sbjct: 806 PYSNADWEKLSIFLNFLIPKLPAPKEEDLSRGILEAIDMDSYRVELKTSLKIDLADEDAE 865 Query: 992 VSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQH 1051 + G P+ L+ ++++ + ++ K +++ + Sbjct: 866 IKPVPTAGGGSKPEADLDQLSNIIKAFNDQFG----------NINWKDNDKIRRVIAEEI 915 Query: 1052 FEESSLRKAWKE-TRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQ 1110 + + A++ RN D I H AA+ + + + Sbjct: 916 PAKVAADVAYQNAMRNNDKRTARIEH--DAALQRVMIELLADHTELFKQFSDNQSF---- 969 Query: 1111 LSWL 1114 WL Sbjct: 970 KKWL 973 >UniRef50_C6BRN4 Type I site-specific deoxyribonuclease n=2 Tax=Proteobacteria RepID=C6BRN4_DESAD Length = 802 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 162/655 (24%), Positives = 245/655 (37%), Gaps = 127/655 (19%) Query: 239 NLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 N +E E+R LID L GW ++ G G Q A Sbjct: 4 NRNEAETRAELIDPALTSCGWGKVDESR---------VKREVITNGRLIGGGRRGKQDIA 54 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DYVL + +AV+EAKR ++ + ++ RY+ Sbjct: 55 DYVLVYKGQKLAVIEAKRESLSDTEGVQQAKRYADKL----------------------- 91 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 K F YSTNG + + P+ Sbjct: 92 ---------------KTRFAYSTNGHTVYRIDME------------TGAESHVDAFPTPQ 124 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSE---LGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 EL + +E + F+ P + RYYQ +A+ +AI G+ ILL +ATG Sbjct: 125 ELWDETFAEENEWRNRFSSVPFEDKGGTWEARYYQHNAINQALEAIAAGKDRILLTLATG 184 Query: 475 TGKTRTAIAMMFRLIQSQRF-------------KRILFLVDRRSLGEQALGAFEDTRING 521 TGKT A + ++L S+ RILFL DR L +QA +F Sbjct: 185 TGKTFIAFQLSWKLFHSRWNIKEWREGEEITRRPRILFLADRNILADQAYNSFSAF--PE 242 Query: 522 DTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQ------SDEPMPVARYDCIVVDE 575 D I + I Q+ + + P +D I++DE Sbjct: 243 DALVRISPDAIRKKGMVPKNGNIFFTIFQTFMSGIDAEGNSAPNFGDYPPDFFDFIIIDE 302 Query: 576 AHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPALH----TVQIFG 630 HRG D+ S +R IL++F AV++ LTATP T FG Sbjct: 303 CHRGGAKDE----------------STWRGILEYFAPAVQLGLTATPRRTNNADTYGYFG 346 Query: 631 EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDD 690 +PVY Y+ + + DGFL + + E V + E+I +E+ Sbjct: 347 DPVYTYSLKDGINDGFLTPFKVV----------QIATTLDEYV--YTSDDEIIQGEVEEG 394 Query: 691 QDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKK 750 + + +FNR + I A + +D + QKT+VF T HA ++ + + Sbjct: 395 KRYGENEFNRSIEIKAREEHRVKIFMDNIDQS--QKTIVFGATQHHAGILRDIINQQKTC 452 Query: 751 KYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVF 810 P + + + +K R Q N++ +P I+ T L+TGVD ++ NIV Sbjct: 453 SDPNYCVRVVAQDLAEGEKWLRIFQD-----NEKTIPTILTTSQKLSTGVDARNVRNIVL 507 Query: 811 LRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTM-RPVVVRP 864 LR V S I ++Q+ GR TRL K F I+D V Y + PV P Sbjct: 508 LRPVNSMIEFKQIVGRGTRLFD--GKDYFTIYDFVKAYEHFNDPEWDGEPVEPEP 560 >UniRef50_C4Z8T4 Type I site-specific deoxyribonuclease, HsdR family n=13 Tax=Bacteria RepID=C4Z8T4_EUBR3 Length = 1048 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 146/1030 (14%), Positives = 304/1030 (29%), Gaps = 147/1030 (14%) Query: 148 LTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQL 207 T+ + E Q Q+E + +++ + L E + + L +L Sbjct: 13 NTVVTEYEPLKHRSDQYQSEADLEKEFIRMLCEQGYEYLPIHTE-----EDLITNLRQKL 67 Query: 208 AEKNAELAKQTEQER--KAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTL 265 E NA TE ER + +++T + E + R SK + Sbjct: 68 EELNAYKFSDTEWERFFNDCVANKNEGIVEKTAKIQEN----YVQVLKRD---DNMSKNI 120 Query: 266 RFSKGARPEPGVNKAIAEWPTGKDET-GNQGFADYVLFVGLKPIAVVEAKRNNIDVPARL 324 + I ++ GK + D + V P+ VE KR + + Sbjct: 121 SLIDKKNIHNNRLQVINQYVIGKADGAKYDNRYDVTILVNGLPLVHVELKRRGVAIKEAF 180 Query: 325 NESYRYSKCFD----NGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYST 380 N+ RY + F + + T + ++ Sbjct: 181 NQINRYQRDSFWAGSGLFEYVQIFVISNGTNTKYYSNS--TRFNAIKDANATNTKKGKTS 238 Query: 381 NGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGM 440 N E+ + S D+ D + +L +L Sbjct: 239 NSFEFTSYWSDASNRIIVDLVDFT------KTFFAKHSILNILTKYCIFT-------SEN 285 Query: 441 SELGLRYYQEDAVRAVEKAIVKGQQ---------EILLAMATGTGKTRTAIAMMFRLIQS 491 + +R YQ A + I + TG+GKT T+ Sbjct: 286 MLMVMRPYQITATERIINRIEIAHNYKKYGDIAAGGYIWHTTGSGKTLTSFKTARLASDL 345 Query: 492 QRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQS 551 ++LF+VDR+ L Q + ++ NS K L + + +KI + T+Q Sbjct: 346 PYIDKVLFVVDRKDLDYQTMKEYDRF--EKGAANSNSSTKILEKQLRDSKSKIIITTIQK 403 Query: 552 LVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD 611 + + E + I+ DE HR D F+ + I Sbjct: 404 MSSFIKKFKEHPVYNKQVVIIFDECHRSQFGDMHAAIVN-SFKKYYMFGFTGTPIFPSNT 462 Query: 612 AVKI--ALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ--------IITRNA 661 T T Q FG+ ++ YT A+ D ++ I Sbjct: 463 GSICNPKFT-----TTEQTFGDKLHTYTIVNAINDKNVLPFKVEYHKTMEMEPDIDDEQV 517 Query: 662 QEGVYLSKGEQVERISPQGEVINDTLED-----DQDFEVADFNRGLVIPAFNRAVCNELT 716 + E +RI + I D + D+ + + + +R E+ Sbjct: 518 LDIDRKKAFEDPKRIHLVAQYILDHFDQKTYRGDKTYIFNSLTNIEEVASADRGKVEEIK 577 Query: 717 NYLDPTGSQKTLVFCV-TNAHADMVVEELRAAFKKK------------------------ 751 +G +F V + A +E R K Sbjct: 578 QKQRLSGFNS--IFAVSSVPMAKAYYDEFRNIIKNDPTKNLKIAVIYSYGANEEEVDGIL 635 Query: 752 ----------------------YPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNI 789 + D+DK + + R + ++ Sbjct: 636 DEENPEDTSALDQNSRDFLEAAIQDYNLMFHTNYSTDSDKFQNYYKDVSLRMKNKE-LDM 694 Query: 790 VVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYS 849 ++ V++ TG D ++ + + ++ L Q R R+ + KT I ++ Sbjct: 695 LIVVNMFLTGFDATTLNTLWVDKNLKMHGL-IQAFSRTNRILNSI-KTFGNIVCFRNLQK 752 Query: 850 TLESVDTMRPVVVRPKVELQTLVNEI------------------TDSETYKITEADGRSF 891 +++ + + L + + T K D + Sbjct: 753 RVDAAISQFGDENAGGIVLMQSFKDYYYGYESVDGKPMPGYIDMIEDLTNKFPVMDSQIM 812 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP 951 E ++ ++ I+ + E DK++ + QD G + R++ Sbjct: 813 GEEKQKEFISLFGAILRMRNLLVAFDEFKDKELIS-ERDLQDYLGKYQDLRDEWKRKREN 871 Query: 952 HWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDI---DDEVVSVKSLYGDYDTPQDFL 1008 S ++ + + + +++++ +I+ + +D+ + + +P+ L Sbjct: 872 GESTDIVDDIVFEVELIKQIEINIDYIMMLVNKYHDTHCEDKEILITIRKAVDSSPE--L 929 Query: 1009 EAFDSLVQRSPNAQPALQAVINRPRDLTRKGLV-ELQEWFDRQHF----EESSLRKAWKE 1063 + +L++ N + V+N D + +LQ + + L A++E Sbjct: 930 RSKKALIENFINGVNEIDDVMNEWHDYVVEMREHDLQIIIEEERLKPVETRKFLENAFQE 989 Query: 1064 TRNEDIAARL 1073 + + + Sbjct: 990 GEVKTVGTDI 999 >UniRef50_Q2B8V1 DEAD/DEAH box helicase:Helicase, C-terminal:Type I site-specific deoxyribonuclease HsdR n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8V1_9BACI Length = 949 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 132/904 (14%), Positives = 268/904 (29%), Gaps = 128/904 (14%) Query: 254 RKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEA 313 + G ++T++ + + + D VL++ P+ +VE Sbjct: 68 QDLGGGKKNQTVQLFDFENVQNNEFLVVNQ--ISYTNANGTIRPDLVLYINGLPLVIVEC 125 Query: 314 KRN----NIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGK 369 K + +P + + RY + + F +L S D Sbjct: 126 KSPKLRWDKQLPEGVRQFGRYQEMNEKLFWYNQMLIVTSRDRARVGTIFARP-------- 177 Query: 370 QRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQK 429 ++ K + +V R R E +L+++ + Sbjct: 178 --------------QHYGLWKNPYPLTLEEVGSDRAQDIMAAGILRKESVLDLMRNFIVF 223 Query: 430 QNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ----QEILLAMATGTGKTRTAIAMM 485 G + RY Q AV + IV + + ++ G+GK+ T + M Sbjct: 224 D--------GKVKKLSRYQQYRAVNKGIQRIVTEKKPSLRGGVVWHTQGSGKSLTMVYMA 275 Query: 486 FRLIQSQ--RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTK 543 +L + + ++ + DR+ L EQ F++ T + L + Sbjct: 276 MKLRREASLQNPMLVIVTDRQDLDEQITKTFQNCGFPNPT--QAVSVADLKRQLERGPGA 333 Query: 544 IHVATVQSLVKRTLQSDEPMPV----ARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDY 599 + +Q P+ A ++ DE+HR Sbjct: 334 TVMTLIQKFQGAEDDDGNPVFPVISEAENIIVMTDESHRSQY---------------KGL 378 Query: 600 VSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQ 655 R+ L +A I T TP T FG + +YT AV DG + + Sbjct: 379 ALNMRKALP--NATFIGFTGTPIEKEKRSTTGKFGSYIDKYTIEQAVKDGATVPIHYESR 436 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNEL 715 + + + +V + + + + L P + ++ Sbjct: 437 LPNVHVKGDSLDELFNRVFFEYDEDTREKIKQKHVNEALI------LTAPERMDEIALDI 490 Query: 716 TNYLDPT---GSQKTLVFCVTNAHADMVVEELRAA----FKKKYPQLEHDAIIKITGDAD 768 + + K V CV+ A + F+ K D Sbjct: 491 VRHFESRILVNGYKAQVVCVSRTAAVRYKALIDQYSAGQFETAVIFSSGHNDEKELRDHH 550 Query: 769 KDARKVQTMITRFNK---ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 + + +I RF K E +++ D L TG D P + + +R L Q Sbjct: 551 ITKEQEKELINRFKKPFSEDKLAMLIVCDKLLTGFDAPIEQVMYLDKPLREHNLL-QAIA 609 Query: 826 RATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITE 885 R R + NK+ I D + L+ E + + Sbjct: 610 RTNRKYDD-NKSYGLIVDYFGVSRFLDEA-----------------------LEIFSAND 645 Query: 886 ADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASR 945 G + + + R +++ D +R +E + + + FA Sbjct: 646 VKGALQSIDEELPRLEQRHRSAMRYFDGLKKTQREDSILRLKEEDVRTDFDIAYKRFAES 705 Query: 946 LREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYD--- 1002 + + P AE F + + +L ++ D D ++V + + + Sbjct: 706 MDKVMPSPKAEKFVGDLKHLGMIRQLAKSRFSVEDGMDISDCGEKVRELIYKHLQSEGIQ 765 Query: 1003 --TPQDFLE-AFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRK 1059 P L+ AF V+ + + + E+ + +SL++ Sbjct: 766 VRKPVSILDAAFKEDVEENV-------KPETKAAQIEHAIKREISVKMEEDEVFYTSLKE 818 Query: 1060 AWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQ 1119 +E + + EE V A + + +SEQ + ++L + Sbjct: 819 KVQELIERFKER---QMDIYELLDKLYEAREELVKKAEGK--TNSGLTSEQEPYYNKLME 873 Query: 1120 ALKE 1123 ++ Sbjct: 874 VFED 877 >UniRef50_C6MBL3 Type III restriction protein res subunit n=3 Tax=Proteobacteria RepID=C6MBL3_9PROT Length = 1103 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 150/935 (16%), Positives = 284/935 (30%), Gaps = 119/935 (12%) Query: 280 AIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNG-- 337 A + T G D VLFV P+A +E K A N +Y Sbjct: 165 ATDQHLTQTGTKGKAWRIDLVLFVNGLPVATLELKSEFK--QAVFNAIQQYKTTRFATDP 222 Query: 338 --FLRETLLEHYSPDEVHEAVPEYETSWQD-TSGKQRFKIPFCYSTNGREYRATMKTKSG 394 E LL VH AV +YE G+ F +PF T Sbjct: 223 VTKKPEPLLTFKRGALVHFAVSQYEVYMTTRLEGEDTFFLPFNKGT-----IEGGAGNDV 277 Query: 395 IWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFAD-----NPGMSELGLRYYQ 449 + T + + P+ LL +L Q + D + + + RY+Q Sbjct: 278 PEEVNRYATDYLWNEV---LLPDNLLTILARYVHLQIEEKEDWEGRKSKKETLIFPRYHQ 334 Query: 450 EDAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLIQSQR------FKRILFLV 501 D V + A + L+ + G+GK+ + + +L F ++ + Sbjct: 335 WDVVNRLMNAARTEGPGHKYLIQHSAGSGKSNSIAWVAHQLSSLYNPQGSKLFNSVIVVT 394 Query: 502 DRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP------EDSTKIHVATVQSLVKR 555 DR L +Q I +G K E+S I + T+Q+ Sbjct: 395 DRTVLDDQLQDTINQFEHVDGMVGRINRQEGDGSKSEKLAAALENSQPIIIVTIQTFPYV 454 Query: 556 TLQSDEPMPVARYDC-IVVDEAHRGYILDKEQTEGELQFRSQLDYVS---AYRRILDHF- 610 + + + + I+ DEAH + E+ + ILD Sbjct: 455 LRAIENSVSLKQRCYAIIADEAHSSQTGSTARQLKEVLMIDAKADGEEELSSEDILDAAV 514 Query: 611 -------DAVKIALTATPALHTVQIFGEP---------------VYRYTYRTAVIDGFLI 648 + A TATP T+++FG + Y+ R A+ +GF++ Sbjct: 515 ASRRASDNLSYFAFTATPKTKTLELFGRLPNPHEPPSRTNKPQAYHVYSMRQAIEEGFIL 574 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 D + +Q E S + +V + ++ +A Sbjct: 575 DVLKNYTNYKVAYNLAQKIQSADQ-EVESRKAKVKLNQWVRLHEYNIAQ---------KV 624 Query: 709 RAVCNELTNYLD--PTGSQKTLVFCVTNAHADMVVEELRAA------------------- 747 + + + + G K +V + A Sbjct: 625 QVIVEHFRSNVQGLLGGQAKAMVVTSSRKEAVRYKLGFDKYIAQQGYPKIHAMVAFSGEV 684 Query: 748 -FKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSIC 806 F +K P K T K + M F+ + +++ + TG D P +C Sbjct: 685 EFSEKDPNATALLGEKFTESNMNPNLKGRDMRKAFDTDDY-QVMIVANKFQTGFDQPKLC 743 Query: 807 NIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV----DIYSTLESVDTMRPVVV 862 + +K+ + Q R R P +T I D DI + + Sbjct: 744 AMYVDKKL-GGVECVQTLSRLNRTYPGKAETGTFILDFFNEPQDILDAFQPYYQTAELAD 802 Query: 863 RPKVELQ-TLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETID 921 +L L +++ + + E + A ++ + A + I A + Sbjct: 803 VSDPDLIFDLFDKLKAAGIFTWNEIEQFCAAFYTKNKSNAAIANICKPAVERWQKRYQSA 862 Query: 922 KQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDA 981 + RL + + + E + + L F L T + Sbjct: 863 LEAYRLAKEMFERTKKTRDAVLIANAENSFKACKKEKDALDIFKK---DLGTFVRFYEFM 919 Query: 982 PIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLV 1041 +D D+ + SLY + P ++L++ ++ R + ++ L Sbjct: 920 SQIVDYADKSLEKLSLYARHLRP----MLRETLIEEDNVDLSSVLLSHYRLSKIRQQDLK 975 Query: 1042 ELQEWFDRQHFEESSLRKAWKETRNEDIAARLIG-----HIRRAAVGDALKPFEERVDHA 1096 Q+ + Q L A + + E+ + +I I L + + Sbjct: 976 LQQDTGEYQLKPGEGLGTASAKDKQEEFLSHIISRLNELFITDYLTEKDLVNYAYTIRDK 1035 Query: 1097 LTR----IKGENDWSSEQL---SWLDRLAQALKEK 1124 ++ +K + S +Q ++ + A+ + Sbjct: 1036 VSENALVMKQIANNSPQQAMLGDFIKAVDDAVMDS 1070 >UniRef50_Q47281 Type I restriction enzyme EcoEI R protein n=45 Tax=Bacteria RepID=T1RE_ECOLX Length = 813 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 179/896 (19%), Positives = 327/896 (36%), Gaps = 130/896 (14%) Query: 240 LSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 L+E + I ++ AGW S+ R E + AD Sbjct: 9 LTETDIITKFILPAVKDAGWDVMSQ-------IRQEVKLRDGKIVVRGKLASRIKVKSAD 61 Query: 299 YVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 VL+ P+AV+EAK N + + + Y+ D Sbjct: 62 IVLYHKPNLPLAVIEAKANKHAISKGMQQGLDYASLLD---------------------- 99 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALP--EWHR 415 +PF +++NG G + D + + + + ++ Sbjct: 100 ----------------VPFVFASNG----------DGFIFHDKTNPQQLESEIALSDFPT 133 Query: 416 PEELLEMLGSEPQKQNQWFADNPGM-----SELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 PE+L + + + S RYYQ A+ A+ G+ ILL Sbjct: 134 PEQLWQKYCAWKGFTQEQLPVISQDYFDDGSGKAPRYYQMQAINRTVDAVSAGKNRILLV 193 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGA-FEDTRINGDTFNSIFD 529 MATGTGKT TA +++RL +++ KRILFL DR L +Q F+ Sbjct: 194 MATGTGKTYTAFQIIWRLWKAKNKKRILFLADRNILVDQTKRNDFQPFG---------NA 244 Query: 530 IKGLTDKFPEDSTKIHVATVQSLV--KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQT 587 + +T + + + ++H+A Q++ + ++ + + +D IV+DE HRG + Sbjct: 245 MTKVTGRTIDPAYEVHLALYQAITGPEEHQKAYKQVAPDFFDLIVIDECHRGSASED--- 301 Query: 588 EGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPALH----TVQIFGEPVYRYTYRTAV 642 SA+R IL++F A ++ LTATP + FGEPVY Y+ + + Sbjct: 302 -------------SAWREILEYFGSATQVGLTATPKETEDVSNIDYFGEPVYTYSLKEGI 348 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 DGFL +G KG+ + +D+ + + DF+R L Sbjct: 349 EDGFLAPYKVVRV-DIDVDVQGWRPVKGQLDKY---------GEEIEDRIYNLKDFDRTL 398 Query: 703 VIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 VI V +T+YL T KT+VFC HAD + L + ++ Sbjct: 399 VIDERTMLVAQTITDYLKRTNPMDKTIVFCNDIDHADRMRHALV-VLNPEQVLKNEKYVM 457 Query: 762 KITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 KITGD D ++ I K+ P I T +L+TTGVD + +V + ++S ++ Sbjct: 458 KITGDDDIGKAQLDNFIN--PKKAYPVIATTSELMTTGVDAQTCKLVVLDQNIQSMTKFK 515 Query: 822 QMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTM----RPVVVRP---KVELQTLVNE 874 Q+ GR TR+ + K F I D + +VV+P + + Sbjct: 516 QIIGRGTRINEKHGKLWFTILDFKKATELFADPRFDGLPEKVLVVKPGDISDKDSDFNEQ 575 Query: 875 ITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDA 934 + + D E + V + ++ + D ++ V +D Sbjct: 576 LDAENNADGGDNDASEAREDVADYQVNRDKQAGNGEFHDDDENKVRKFYVNGVDVKVLAK 635 Query: 935 AGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSV 994 ++ + E ++ + K + A L+ + + ++ +++ + Sbjct: 636 RVQYYDSDGKLVTESFQDYTRKTMLKDSEY-ASLDSFVRKWQDAPRKQVIIEELEQLGIL 694 Query: 995 KSLYGDYD-TPQDFLEAFDSLV-------QRSPNAQPALQAVINRPRDLTRKGLVELQEW 1046 + + D + +V ++ A + + + ++ L L + Sbjct: 695 WDVLAEEVGKDLDPFDLLCHVVYGQPPLTRQERVANVRKRNYFTKYAEPAQQVLNTLLDK 754 Query: 1047 FDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKG 1102 + + +E + K + D R I I+ +E+ V+ I Sbjct: 755 YADEGVQEIEDVQVLK-LKPFDTLGRPIEIIKTRFGDKK--AYEQAVNELENEIYQ 807 >UniRef50_B7R239 Type I restriction enzyme n=1 Tax=Thermococcus sp. AM4 RepID=B7R239_9EURY Length = 983 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 125/913 (13%), Positives = 264/913 (28%), Gaps = 126/913 (13%) Query: 259 QADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNI 318 + + R N+ + G D +L+V P+ ++E K+ ++ Sbjct: 93 EETGEPKRLMLIDYENLQNNEFLVANQVGYPF--KTKIPDVILYVNGIPLVIIECKKLDV 150 Query: 319 DVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCY 378 + Y K F + V+ + Sbjct: 151 SWKKAYEQIKGYEKEMPELFKYVQVGVAVGDKPVYFPI---------------------- 188 Query: 379 STNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP 438 + ++ + + + +PE LL++L + Sbjct: 189 --------VPWLSSVPVYEWKWGNFDPLDDLVE-LLKPETLLDILRYFTFYRES----GG 235 Query: 439 GMSELGLRYYQEDAVRAVEKAI------VKGQQEILLAMATGTGKTRTAIAMMFRLIQSQ 492 +++ RY Q AVR + + L+ G+GKT T I +++ + Sbjct: 236 AFTKVLPRYMQYRAVREIVNLAVGYARGETERNRGLIWHWQGSGKTLTMIFSAYKIKRLL 295 Query: 493 RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL 552 I F+VDRR L Q G + ++ + +SI +K + + I + + Sbjct: 296 GNPTIFFIVDRRELERQLSGELKAVGLSFEVIDSIEKLKEVLTHA-DGKRGIFITLIHKF 354 Query: 553 VKRTLQ----------SDEPMPVARYDCIV-VDEAHRGYILDKEQTEGELQFRSQLDYVS 601 L+ + + R D +V +DE HR + S Sbjct: 355 RPEELEDVLTELKKKSRRQRTIMNRRDVVVLIDEGHRTQYGE---------------LAS 399 Query: 602 AYRRILDHFDAVKIALTATP----ALHTVQIFG----EPVYRYTYRTAVIDGFLIDQDPP 653 R IL A A T TP T FG + RY ++ DGF + Sbjct: 400 TMRSILK--SASFFAFTGTPIAKKGRDTYATFGYKDRPYLDRYFITQSIEDGFTVKIAYQ 457 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCN 713 ++ + L ++ E +E+ + L P + Sbjct: 458 ARLEEDVHLKRELLEAFLS-SKLEEIPEEYRGRVEEKLKKRLNAIRVFLKNPKRIEMIAQ 516 Query: 714 ELTNYLDPT-GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDAR 772 ++ + + K +V V + L + Y ++ + + + Sbjct: 517 DIARHYKESVEPFKAMVVAVDRESCVLYKRALDKYLPRGYTEIVMTFNRDDSEVIKEYQK 576 Query: 773 K-------------VQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRIL 819 + + + F + +P I++ D+L TG D P + + + ++ L Sbjct: 577 ELEERFPGKDMAEIRERIREDFRNKEIPKILIVTDMLLTGFDAPILQTMYLDQPLKEHRL 636 Query: 820 YEQMKGRATRLCPEVN---KTSFKIFDCVDIYSTLESVDTMRPVVVRPK--VELQTLVNE 874 Q R R + K + D V I+ L+ + V ++ + E Sbjct: 637 L-QAIARTNRPFIKNGENIKPFGLVIDYVGIFKELKRALEIYDEVDIEGAAYSVEEIKEE 695 Query: 875 ITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDA 934 + + DG + A R + +L +D Sbjct: 696 LRKKIAKAMGYFDGLEPGRDRETIMNAVETLFRNNKGEEFQRLYREIRHHYKLLMEDRDE 755 Query: 935 AGVNFN-------GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDI 987 F + +++ P + + + + D PI Sbjct: 756 FREAFKWLTEVYYAYRAKVDGVPPEVELKADEFFREALKFIHETVDIEEIKTDFPIMELD 815 Query: 988 DDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWF 1047 ++ + V + L + V LT + +++ Sbjct: 816 EEFLKKVMRERDKRKAFTNLLFSVRHYVNTHK-------------GPLTEDLVEQVERII 862 Query: 1048 DRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWS 1107 + ++ + K ++E IA + + L E + L + N + Sbjct: 863 EAWRHKKEEIEKLYEEL--LGIAGEIEKRSQEQRKL-GLNELEYAILMVLKKHVKTN--T 917 Query: 1108 SEQLSWLDRLAQA 1120 +E + + +L + Sbjct: 918 NELIKGIRKLLKE 930 >UniRef50_B7GLJ0 Type I site-specific restriction-modification system, R (Restriction) subunit n=3 Tax=Bacillaceae RepID=B7GLJ0_ANOFW Length = 1020 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 141/943 (14%), Positives = 301/943 (31%), Gaps = 135/943 (14%) Query: 262 SKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNN---I 318 + + PE + + P E D V+++ P+ V E K N Sbjct: 107 TPHIFPIDWEHPENNDFLVVNQLPI---EGRMSRRPDIVIYINGLPLIVFELKNPNSEQA 163 Query: 319 DVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCY 378 V + Y+ F + E + +PF Sbjct: 164 TVYDAYTQIQNYTYDISQLFNYNAFVVISDNVET------------------KHGMPFA- 204 Query: 379 STNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP 438 ++ A+ K+ G D M + + LL + + + Sbjct: 205 ---DYDFFASWKSIDGR-NVDNNCANTMRTLIEGLFPKDRLLNYIRNFIVF----LEEGS 256 Query: 439 GMSELGLRYYQEDAV-----RAVEKAIVKGQQEILL-AMATGTGKTRTAIAMMFRLIQSQ 492 ++++G +Y+Q V A+ G ++I + TG+GK+ + + L + Sbjct: 257 KITKVGAKYHQFFGVNFAVNEAIRATRPDGDRKIGVMYHTTGSGKSLSMLFFAGILSRHP 316 Query: 493 R--FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQ 550 + I+ VDR L +Q F + D D + L ++ +I +T++ Sbjct: 317 KMENPSIVIQVDRNDLDKQLHDTFVQGKSYIDHVEHAEDTEQLRTLLRGEAGQIIFSTIE 376 Query: 551 SLVKRTLQSDEP-MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDH 609 K+ ++ P + R ++ DEAHR + + R L Sbjct: 377 KFRKKEGETQHPVLSKRRNIVVIADEAHRTQAGFAG------------GFAAQLRYALP- 423 Query: 610 FDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGV 665 +A I T TP HT +IFG ++RY AV D + ++I + Sbjct: 424 -NASHIGFTGTPVDFVGNHTEEIFGHIIHRYDMAQAVADKATLPIYYESRLIPLDLSAED 482 Query: 666 YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDP--TG 723 K +++ +D ++ + A + + P R + N++ ++ + Sbjct: 483 IDEKYKEI----IVDAGGDDEESENYKRKWAALEKVVGTPKRLRRLANDIVSHFNQVANP 538 Query: 724 SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKD------------- 770 QK ++ C++ A + LR + +TGD KD Sbjct: 539 FQKAMIVCMSRRIAVDLYNYLREI------PECPPVEVIMTGDVSKDPKEWREVQPGSKY 592 Query: 771 -----ARKVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMK 824 ++ + + + P V+ VD+ TG+D + + + ++ L Q Sbjct: 593 AHIKTKKEQEEVKAKLRDPEDPLKFVIVVDMWLTGMDAKPLSYLYVDKPMKGHNL-IQAI 651 Query: 825 GRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPV---VVRPKVELQTL-------VNE 874 R R+ P K + D + I ++L+ P ++ + Sbjct: 652 ARVNRVFP--GKEGGVVVDYIGIATSLKEATHKYTQSGGTGSPSYDISEAVKIFMGHLEA 709 Query: 875 ITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSET--IDKQVRRLDELCQ 932 + + +I + R+ + E +A L ++ + E ++K + + + Sbjct: 710 VREFIPSEIDVQNWRTKPKIEREDFIADLVNVLLNSDPEEYIQEATKLEKSYQLVKNQPE 769 Query: 933 DAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVV 992 + ++ + K E+L I+N + E V Sbjct: 770 VLELADEAMLYLMIKAQLRKHLRPPIEKPSENKTLEERLSELIDN-------SLLAKETV 822 Query: 993 SVKSLYGDYDTPQDFL-EAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQH 1051 + + G L +AF + + + + L+ + D + V + + Sbjct: 823 DIFKVAGIERPDISILDDAFLADLTKKEHEDLRLKLLKKLLEDQIK---VTFSKGSPQSK 879 Query: 1052 FEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQL 1111 L K K+ N I A A V + + ++ + + + + S E++ Sbjct: 880 ALSELLEKTLKDYHNRVIQA--------ADVVRVMIKMRKEMEEEMRK-RHDLGLSEEEI 930 Query: 1112 SWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNL 1154 + + ++ + F + + L Sbjct: 931 EFYKAI-------TAMEQESFSNEFLADLIH--KVVKALKKQL 964 >UniRef50_A3EUI1 Putative type I restriction enzyme, HsdR family n=2 Tax=Bacteria RepID=A3EUI1_9BACT Length = 1007 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 134/912 (14%), Positives = 274/912 (30%), Gaps = 117/912 (12%) Query: 266 RFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN-NIDVPARL 324 + + + NQ D LFV P+A E K + +V + Sbjct: 112 NPALWDHYRANRLTVVRQL---HYSRHNQNALDLGLFVNGLPVATCELKTDLTQNVRDAI 168 Query: 325 NESYRYSKCFDN-GFLRETLLEHYSPDEVHEAVPEYETS-WQDTSGKQRFKIPFCYSTNG 382 + + D E LL + VH AV E G +PF + Sbjct: 169 RQYRKDRSPRDPVAKENEPLLAFKTRALVHFAVSTDEVFITTRLEGAHTRFLPFNQGHDE 228 Query: 383 REYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGM-- 440 T + + + + + L++LG+ + + Sbjct: 229 GAGNPPNP--------QGYATSYLWEKIW---QRDNWLDILGNFLTIEKKEDESEGKKKV 277 Query: 441 --SELGLRYYQEDAVRAVEK--AIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQR--- 493 + + RY+Q DAVR + + I L+ + G+GK+ T + R+ Sbjct: 278 KETLIFPRYHQWDAVRRLIEAARIEGVGHSYLIQHSAGSGKSNTIGWVAHRMASLHNGSG 337 Query: 494 ---FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQ 550 F I+ + DR+ L +Q I + + + I + T+Q Sbjct: 338 EKVFDSIVVITDRKVLDKQLQETIYQFEHKEGVVQKIDENSDQLAQALSEGKPIIITTLQ 397 Query: 551 SLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF 610 ++ + R+ I+ DEAH Q + S++ I Sbjct: 398 KF-PFVMEKVGGLKKRRFALII-DEAHSSQTGSAAQKLQAVLASSEIGETDPEEEITSED 455 Query: 611 -------------DAVKIALTATPALHTVQIFG--------EPVYRYTYRTAVIDGFLID 649 + A TATP T++IFG EP + Y+ R A+ +GF++D Sbjct: 456 VVNRVMTSRKRPENLSTFAFTATPKAKTLEIFGRPGADGKPEPFHVYSMRQAIEEGFILD 515 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 + + +++ + + ++I F Sbjct: 516 VLQHYVSYKAFYKLAHTGKEDKELPMDKASKALGRYLRLHPHNIAQK---VAIIIEHFRE 572 Query: 710 AVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ-------------LE 756 V ++ G K +V + A + Q Sbjct: 573 KVLPKI------GGKAKAMVVTDSRKAAVRYKISFDKYIAEHGYQDLRTLVAFSGKVSDP 626 Query: 757 HDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRS 816 + + + + Q + F+ + +++ + TG D P + + +++ Sbjct: 627 ESGSFEFSETSMNRDLRGQDIRDAFDTDDY-KVLIVANKFQTGFDQPLLHTMYVDKRLAG 685 Query: 817 RILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVELQ---TL 871 +L Q R R+CP K + D V+ + R + + + L Sbjct: 686 -VLAVQTLSRLNRICP--GKEDTFVLDFVNNPEEILEAFRPYYRTARLEERTDPNLIHDL 742 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELC 931 ++ + Y TE + + A ++ A L + A ++++ +++ Sbjct: 743 KIKLDGTHVYYWTEVERFAEAFFDPKRTQASLHPWLKPAADR-------YRELKEEEQVL 795 Query: 932 QDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEV 991 ++F L + P+ L A L + D +D Sbjct: 796 FRKDLISFLRLYEFLSQIVPYND----PDLEKLYAFGRNLLPRLGVKTDTDTIDISEDVR 851 Query: 992 VSVKSLYGDYDTPQDFLEAFDSLVQRSPN---------AQPALQAVINRPRDLTRKGLVE 1042 ++ L + E + + + L ++ + DL L + Sbjct: 852 LTHFRLQKQGERKLSMEEGETPYLIPTSDIGTGVVRESETGKLSEIVRKMNDLFSGDLTD 911 Query: 1043 LQEWFDRQHFEESSL--RKAWKETRNEDIAARLIGHIRRAAVGDALKPFE---------- 1090 H +E L RK ++ +N ++G + + ++ E Sbjct: 912 ADLIGYATHTKEKLLENRKLEEQAKNNTFEQFILGDFDQEFMNTIIENHERNQKMSNQVL 971 Query: 1091 --ERVDHALTRI 1100 ERV ++ Sbjct: 972 SDERVREGFKKL 983 >UniRef50_B5IRS5 Type I site-specific deoxyribonuclease, HsdR family, putative n=1 Tax=Thermococcus barophilus MP RepID=B5IRS5_9EURY Length = 979 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 138/942 (14%), Positives = 274/942 (29%), Gaps = 125/942 (13%) Query: 259 QADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNI 318 + K L PE + D +L++ PI ++E KR Sbjct: 91 TGEPKRLMLIDYKNPENNEFLVANQV----GYPFKTKIPDMILYINGIPIVLIECKRLKK 146 Query: 319 DVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCY 378 D + RY K F V+ Sbjct: 147 DWKEAYRQIKRYEKEMPELFKYVQFSIAIGDRVVYFP----------------------- 183 Query: 379 STNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP 438 ++ ++ + E P LL++L + D Sbjct: 184 -------NVPWLEDVSVYEWKGESFDDLDN-IMEILIPANLLDILKYFIFYR----EDKG 231 Query: 439 GMSELGLRYYQEDAVRAVEKAIVKG------QQEILLAMATGTGKTRTAIAMMFRLIQSQ 492 ++++ RY Q A + + VK + + L+ G+GKT T I +++ + Sbjct: 232 VITKVLPRYMQFRATNKIVERAVKYAKGETERNKGLIWHWQGSGKTLTMIFSAYKIKRLL 291 Query: 493 RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL 552 I F+VDRR L +Q + ++ + SI +K + + I V + Sbjct: 292 GNPTIFFIVDRRELEKQLSDELKSIGLSFEVVGSIPKLKEILMHS-DGKRGIFVTLIHKF 350 Query: 553 VKRTLQSDEPMPV----------ARYDCI-VVDEAHRGYILDKEQTEGELQFRSQLDYVS 601 + L+ R D I +DE HR + + Sbjct: 351 REDELKELREQLKKESRRRKTIMNRKDVIAFIDEGHRTQYGE---------------LAA 395 Query: 602 AYRRILDHFDAVKIALTATP----ALHTVQIFG----EPVYRYTYRTAVIDGFLIDQDPP 653 R IL +A A T TP T FG + RY ++ DGF + Sbjct: 396 TMRSILK--NASFFAFTGTPISKKYRDTYATFGYKDEPYLDRYFIIDSIRDGFTVKIAYQ 453 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCN 713 ++ L ++ E + +E+ ++ L P + Sbjct: 454 ARLEDEVRLRKEDLEAF-LASKLEEIPEEYREKVEEKLKKKLNAIKIFLKNPKRIEKIAE 512 Query: 714 ELTNYLDPT-GSQKTLVFCVTNAHADMVVEELRA-----------AFKKKYPQLEHDAII 761 ++ + + K +V V + + L F + PQ+ + Sbjct: 513 DIAKHYKESVEPFKAIVVAVDREACVLYKKALDKFLPSEYSEIVMTFNQNDPQIIQEYFN 572 Query: 762 KIT--GDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRIL 819 ++T + ++T F K+ P I++ D+L TG D P + + + ++ L Sbjct: 573 ELTRKYRTKDQEEIREEIVTSFKKKEFPKILIVTDMLLTGFDAPILQTMYLDKPLKEHRL 632 Query: 820 YEQMKGRATRLCPEVN---KTSFKIFDCVDIYSTLESVDTMRPVVVRPK--VELQTLVNE 874 Q R R + K I D V I+ L+ + V +L + E Sbjct: 633 L-QAIARTNRPFFKNGENIKAFGLIVDYVGIFKELKRALAIYDEVDIKGVAYKLDEIKEE 691 Query: 875 ITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDA 934 + + + DG + A L R + +L + Sbjct: 692 LRKKISEALALFDGIELKRDRDTIMKAVLILFQKQKGSEFQRLYREIRYYYKLLREDKTE 751 Query: 935 AGVNFN-------GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDI 987 F+ + S++ P ++ + + + D PI Sbjct: 752 FKNVFSWLTEVYYAYNSKVNGLDPEIEQKMDAFFKEALKFIHETIDIEKLRTDFPIIELD 811 Query: 988 DDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSP-----NAQPALQAVINRPR------DLT 1036 ++ + + D L A + + ++ ++ R R + Sbjct: 812 EEFLKKIMRSTSKEQAFYDLLFAVRHYINTHRGPLTSDLVEQVERIVERWRSKKEEIEKL 871 Query: 1037 RKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHA 1096 + L + + ++ E L E + + + + D + E Sbjct: 872 YEELFTVAQKIQQRTKEREELGLTELEYALVMVLKKHVKTNTAQLISDVKELLNETESLR 931 Query: 1097 LTRIKGE----NDWSSEQLSWLDRLAQALKEKVVLDDDVFKT 1134 R K + ++ S + + ++ R + D Sbjct: 932 FPRWKEKADVVSELSRKVMLFIVRKYNRRYGDLFKTRDDILE 973 >UniRef50_B5FA21 Type I restriction-modification system, R subunit n=8 Tax=Bacteria RepID=B5FA21_VIBFM Length = 816 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 187/902 (20%), Positives = 323/902 (35%), Gaps = 150/902 (16%) Query: 239 NLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 +E ++R LI+ L K GW K + I +G A Sbjct: 3 QRNEADTRVDLIEPLLEKVGW----------KTVPSSFIRREVICPGKIQLGGKRARGVA 52 Query: 298 -DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DYVL + +A VEAK + + ++ Y+K Sbjct: 53 SDYVLVYQGRKLAAVEAKSEKLSYTEGVRQAKDYAKRL---------------------- 90 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 F Y+TNG E + K + + P Sbjct: 91 ----------------NCRFGYATNGHEIY------------QIDTVTKEEKLVERFLSP 122 Query: 417 EELLEML-----GSEPQKQNQWFADNPGMSELG---LRYYQEDAVRAVEKAIVKGQQEIL 468 EE+ + Q + F P ++ G RYYQE+A+ A A+ KG +IL Sbjct: 123 EEMWALTFEKKETQYSQVWRERFTAVPMETQSGTWLPRYYQENAINAALDAVAKGAPKIL 182 Query: 469 LAMATGTGKTRTAIAMMFRLIQSQR-------------FKRILFLVDRRSLGEQALGAFE 515 L +ATGTGKT A + ++L S+ RILFL DR L QA F Sbjct: 183 LTLATGTGKTSIAFQIAWKLFNSKWSVKAQKKPELAKRRPRILFLADRNILANQAFNDFS 242 Query: 516 DTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE------PMPVARYD 569 D I + + + + Q+ + +D Sbjct: 243 PFG--DDAIIRISPDEVRKNGGVPKNGSVFFTIFQTFMSGKDSEGNDAPYFGSYSPDFFD 300 Query: 570 CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPAL----H 624 I++DE HRG D+ S++R IL++F AV++ LTATP + Sbjct: 301 FIIIDECHRGGAHDE----------------SSWRGILEYFSSAVQLGLTATPKRLDNAN 344 Query: 625 TVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN 684 T + FG+PVY Y ++ + DGFL I+ ++ + G V+ Sbjct: 345 TYKYFGKPVYSYDLKSGINDGFLTPFKV-YTIVGT----------LDKYTYLPGDGVVVR 393 Query: 685 DTLEDDQDFEVADFN--RGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVE 742 +E + +E DFN RG+ IPA + + ++P ++KT+VFC+T HA V + Sbjct: 394 GKVEPGRVYEEKDFNHNRGISIPAREEKRVHYWMDRINP--NEKTIVFCMTQEHAGEVRD 451 Query: 743 ELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDI 802 + +KK + ++IT D K + + N++ +P IV T L+TGVD Sbjct: 452 LINQYAQKKGGSDNLNYCVRITADDGKSGEADLELFSD-NEKTIPTIVTTSRKLSTGVDA 510 Query: 803 PSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVV 862 ++ NIV +R I ++Q+ GR TRL + K F +FD V + D Sbjct: 511 RNVRNIVLMRPCTDMIEFKQIIGRGTRLYDK--KDFFSVFDFVQAHHNFSDPDWDGEPED 568 Query: 863 RPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDK 922 + + +T+ + S + + + + + + Sbjct: 569 GATLNSDE--EVCSGPIPPDMTDEENESPSGNGAKGNGTDSGDTTNVPPPTPAPDKLV-- 624 Query: 923 QVRRLDELCQDAAGVNFNGFASRLREKGP---HWSAEVFNKLPGFIARLEKLKTDINNLN 979 V+ D + ++ + + K + +++ LP F ++L++ + Sbjct: 625 -VQLNDGRKRQIKHMHAALYWGSVDGKPITAHEFLQQLYGDLPRFFQNEDELRSLW---S 680 Query: 980 DAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPR-DLTRK 1038 D + DE+ + + Q+ LEA +L+ + + + + LTR Sbjct: 681 DPTTRDKLLDEL-------AENEYDQEKLEALKTLIDAPDSDVYDVLMYVAYEKPALTRA 733 Query: 1039 GLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALT 1098 L + F E ++ N I + + ++ A+ Sbjct: 734 QRAALAKASVDSEFTEHRQQEFIHFVLNHYIEGGVSELSMDKMRPLVELKYN-TINDAVA 792 Query: 1099 RI 1100 Sbjct: 793 EF 794 >UniRef50_B6ENI5 Restriction enzyme n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6ENI5_ALISL Length = 1072 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 139/955 (14%), Positives = 287/955 (30%), Gaps = 127/955 (13%) Query: 199 RLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQ--LRKA 256 + LEA + N ++ + + +E+T + + + +++ + Sbjct: 51 LVKRLEAAIKRINPWISD---ENLRKVSREVTHPNFAALMEYNHAFYQTMVNYLSVEQDL 107 Query: 257 GWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN 316 G +T++ P ++ D V FV P+AV+E K Sbjct: 108 GKGRKGQTVKLVDFETPSNNEFLCTNQFKVEGANQS--IIPDIVCFVNGIPLAVIECKSP 165 Query: 317 --NIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFK- 373 + + +N+ RY+ + + + +S Q + Sbjct: 166 YISAPMGDGINQLRRYANLRHTDDHEGAEKLFWYNQLMVSTCRDQAKVGTISSNSQHYGD 225 Query: 374 ----IPFCYS-----------------------TNGREYRATMKTKSGIW---------Y 397 PF + + + K W Y Sbjct: 226 WKDAYPFSDAQLAEQSLRDNIVPLHSAITVQIPDDALDESEDNLAKHDEWQQAAEPAASY 285 Query: 398 RDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVE 457 + + + L L++L + + D+ + + RY Q AV V Sbjct: 286 EVLTEVTAQQRLLAGMFSILNFLDILQNFILFE----TDDGRLIKKVARYQQYRAVNKVI 341 Query: 458 KAIVKGQQE----ILLAMATGTGKTRTAIAMMFRLIQSQRFK--RILFLVDRRSLGEQAL 511 + + G+ ++ G+GK+ T + + ++ + K +++F+ DR L EQ Sbjct: 342 ERLKSGKDRKERSGVVWHTQGSGKSLTMVMLAVKMRRDAELKQYKLVFITDRTQLDEQLS 401 Query: 512 GAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP--------- 562 F D G+T + + L + +DS+ + A VQ + ++ Sbjct: 402 NTFRDA--QGETVYNAGSVAELKELLKKDSSDLVTAMVQKFADLEKEQEKQKTVAEGFAD 459 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPA 622 + + ++ DEAHR T +A KI T TP Sbjct: 460 LNPSDKIIVLADEAHRTQFGGLAMTINAALP-----------------NAPKIGFTGTPL 502 Query: 623 LHTVQI---FGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQ 679 L T ++ FG + Y AV DG + R + V +++ Sbjct: 503 LKTQKMSQAFGGYIDEYKINQAVEDGATVKLL----YEGREVKSEVAGDSLDKLFEEYFG 558 Query: 680 GEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT---GSQKTLVFCVTNAH 736 + E + + V R PA R VC +L + K ++ + Sbjct: 559 EYTEEEQREIKRKYGVEKAVRE--APARIRWVCIDLIKHYKEHIRPDGFKAMIVVGSRHA 616 Query: 737 ADMVVEELRAAFKKK-YPQLEHDAIIKITGDADKDARKVQTMITRFNKE----------- 784 A + + L + D + D + +IT F K Sbjct: 617 AAIFKKTLDELGAPHSEVIISGDHNDEKYLTQYTDKVHQKKVITNFKKPFGIDKQGTEEK 676 Query: 785 ----RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK 840 ++ D+L TG D P + RK++ L Q R R K Sbjct: 677 NKKFNNTAFLIVKDMLLTGFDAPIAQVMYIDRKLQDHTLM-QAIARVNRTY--KGKECGY 733 Query: 841 IFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLV 900 + D + + L + + Q+L +EI + + + Sbjct: 734 VVDYHGLATHLTEALELFS-SDDVEGSYQSLKDEIPKLKAKHTRAMSFFKQVLKNGKPSD 792 Query: 901 AKLQRIIGLATF--NRDRSETIDKQVRRLDELCQDAAGVNF---NGFASRLREKGPHWSA 955 ++ L + ++L+ + DA V F ++ Sbjct: 793 DIDDYVLALKDETVRAQFDMAFKQFGKQLNVILPDAEAVPFIPDMKLLGKIHNASKTKFR 852 Query: 956 EVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEV-----VSVKSLYGDYDTPQDFLEA 1010 + + A++ +L + + D + SV ++ D + A Sbjct: 853 DEGLDMSEIGAKVRQLVDEHILSTGVDPKIAPIDLLAANFKESVTAIKSDESKASEIESA 912 Query: 1011 FDSLVQRSPNAQPA-LQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKET 1064 + + + P +++ R RD+ K + + + + A+++ Sbjct: 913 IKHHITINLDEDPEFYRSLSLRLRDIIEKTAGKWAQQLELMLEMRGDIGSAYQQA 967 >UniRef50_Q167L8 Type I restriction enzyme subunit, putative n=11 Tax=Bacteria RepID=Q167L8_ROSDO Length = 782 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 175/785 (22%), Positives = 276/785 (35%), Gaps = 131/785 (16%) Query: 241 SEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ---GF 296 +E ++R ID L AGW+ K GAR WP G Q Sbjct: 11 TEADTRAQRIDPALAAAGWEGAGK----IDGARVHREEML----WPGRIMSGGGQNAPKP 62 Query: 297 ADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 ADYVL + +AV+EAK+ ++ ++ Y++ Sbjct: 63 ADYVLRMKGHVMAVLEAKKASLSYTEGRGQALDYARRI---------------------- 100 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 F Y TNG ++ + P Sbjct: 101 ----------------GARFAYCTNGLRTY------------EIDLNTGTEGEVEAVPSP 132 Query: 417 EELLEMLGSEPQKQNQWFADNPGMS---ELGLRYYQEDAVRAVEKAIVKGQQEILLAMAT 473 + L E F P + + RYYQ AV AV +A+ + ++ ILL +AT Sbjct: 133 DVLWERCYPTGNAWRDRFGQIPFETDGGKWQPRYYQAAAVNAVLEALAQDEKRILLTLAT 192 Query: 474 GTGKTRTAIAMMFRLIQSQRF--------KRILFLVDRRSLGEQALGAFEDTRINGDTFN 525 GTGKT A + ++L QS+ RILFL DR L +QA +F D + Sbjct: 193 GTGKTSIAFQIAWKLFQSRWNLSGAPTRRPRILFLADRNILADQAYNSFSAFAP--DALS 250 Query: 526 SIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP-----VARYDCIVVDEAHRGY 580 I + + + Q+ + + +D I++DE HRG Sbjct: 251 RINPKEISKKGKMPRNASVFFTIFQTFMTENKSGEAEFNFREYEPDFFDFIIIDECHRGG 310 Query: 581 ILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPAL----HTVQIFGEPVYR 635 D+ S++R IL++F AV++ LTATP T FGEPVY Sbjct: 311 AKDE----------------SSWRGILEYFAPAVQLGLTATPKRKVNADTYTYFGEPVYT 354 Query: 636 YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEV 695 Y R + DGFL R + P+ EV+ ++ D ++ Sbjct: 355 YALREGIDDGFLTPFKV------RQMASTIDTY------VYDPEDEVVGGDVDPDHEYTE 402 Query: 696 ADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQL 755 + N +VIPA ++ +E + ++P QKTLVFC T HA V + + + P Sbjct: 403 DEINAKIVIPAREQSRIHEFMDQINP--RQKTLVFCATQNHAAAVCDYINQIKDIEDPHY 460 Query: 756 EHDAIIKITGDADKDARKVQTMITRFNKER--LPNIVVTVDLLTTGVDIPSICNIVFLRK 813 ++T + D + + F +P I+ T L+TGVD ++ NIV +R Sbjct: 461 ----CERVTAN---DGALGEQHLREFQDNERSIPTILTTSQKLSTGVDARNVRNIVLMRP 513 Query: 814 VRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVN 873 ++S + ++Q+ GR TR K F I+D V Y + P Sbjct: 514 IKSMVEFKQIVGRGTRTFE--GKDFFTIYDFVKAYEHFNDPEWDGPPEPPDTPGTPPKPP 571 Query: 874 EITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQD 933 + D E +L + + + D ++ +E + Sbjct: 572 KPGDPVPPGDPPPTPPEPEEKIVIKLAD--GKERRIKYIATTSYYSHDGKMISGEEFMEQ 629 Query: 934 AAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVS 993 G + E+ K F+ L D L D +D + V Sbjct: 630 LFGDLGDLVTG---EEELRLIWSDPEKRVQFLKVLADRGYDTGRLEDMKRLIDAPNSDVF 686 Query: 994 VKSLY 998 Y Sbjct: 687 DVLAY 691 >UniRef50_A3DMK4 Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Staphylothermus marinus F1 RepID=A3DMK4_STAMF Length = 1020 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 143/904 (15%), Positives = 250/904 (27%), Gaps = 130/904 (14%) Query: 266 RFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN---NIDVPA 322 R + G N+ + + D VL+V P+ +E K + Sbjct: 108 RLKLIDYSDLGRNEFVVSRQVIH-RGVREIRNDIVLYVNGIPLVSIEVKNPTEPGVSWRD 166 Query: 323 RLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNG 382 + RY + + + + Sbjct: 167 AFLQIKRYEHSVPELYKYVQIGVAIGARAKYFPI-------------------------- 200 Query: 383 REYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSE 442 + K W + D+ ++ E RP L++L + + S+ Sbjct: 201 IPWADPGKVPIYEWREEGLDSIG---SVIEMLRPHRFLDILRFYTYFRM----EEGRESK 253 Query: 443 LGLRYYQEDAVRAVEKAI------VKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKR 496 + RY Q A + + L+ G+GKT T I +L Sbjct: 254 VIARYMQYRAANKIVDRVLKRLRGEDNIDRGLIWHWQGSGKTLTMIFAAMKLYWLLENPM 313 Query: 497 ILFLVDRRSLGEQAL-GAFEDTRINGDT-FNSIFDIKGLTDKFPEDSTK----IHVATVQ 550 I F+VDR L Q + + I I L + + + V TVQ Sbjct: 314 IFFVVDRIELQNQLYYENLTKLDLGPEVKPKLIDSIDRLRQVLSYNDYRGEPGVFVVTVQ 373 Query: 551 SLVKRTLQSDEPMPV-----------ARYDCIV-VDEAHRGYILDKEQTEGELQFRSQLD 598 + E R D I+ VDEAHR Sbjct: 374 KFQPSEFEELEKFLKAIAMSRPGTVMDRMDIILLVDEAHRTQYG---------------V 418 Query: 599 YVSAYRRILDHFDAVKIALTATP------ALHTVQIFGEP----VYRYTYRTAVIDGFLI 648 R+L A A T TP +T F P + +Y ++ D + + Sbjct: 419 LAEQMMRLLR--KANYFAFTGTPVPRRNPLKNTFAKFSPPGELYLDKYFILDSIRDKYTV 476 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 + + + E P+ ++ ++ F L P Sbjct: 477 KIAYQPGPFDYSLNKELLEEFLESEFDELPEEVRRRVERHVGKELDIRKFKVFLENPERI 536 Query: 709 RAVCNELTNYLDPT--GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ------------ 754 + + + G K +V + + L +Y + Sbjct: 537 DRIAKYIAEHFRENVDGKFKAMVVASSRRACVLYKRALDKYLPPEYSEVVMTFQSNENDT 596 Query: 755 ----LEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVF 810 + + + +DA VQ +I F E P I++ D+L TG D P + + Sbjct: 597 LIEEYKSELTSRYHVMNPRDA--VQKIIENFRTEDNPRILIVTDMLLTGFDAPILQTMYL 654 Query: 811 LRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPK--VEL 868 + ++ L Q R R V K + D V I+ LE M ++ Sbjct: 655 DKPLKGHRLL-QAIARVNRPYRGV-KEYGLVIDFVGIFRELEKAFAMYEREDLKGAVFDV 712 Query: 869 QTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQ--VRR 926 + ++ E ++ + + + E E + LA E K +RR Sbjct: 713 EEVLREFKETLQHLLQLIGPKPVVESDEELFRYVRIKAEELARNRSLEKEFTGKYRVLRR 772 Query: 927 LDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLD 986 L EL + + P K I ++ + L+ Sbjct: 773 LYELISAKLSRDDIEQYKWFSNIYVFYVKNFVGSTPEEELAERYYKKTIEAISHSLQVLE 832 Query: 987 IDDEVVSVK------------SLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRD 1034 + E +K G D + + + P +V ++ D Sbjct: 833 KEAEFSPIKIDREFFEEFIQNKNIGLEDKASALIMGIHKF-KLYAHNDPIYVSVADKIED 891 Query: 1035 LTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVD 1094 L RK L+ + E L + + E R R V L + Sbjct: 892 LMRKWRRRLKNSLELYE-EAKRLWEKIYALKEEQTKLRFGR--REYLVYRTLVDAGFKEK 948 Query: 1095 HALT 1098 HAL Sbjct: 949 HALE 952 >UniRef50_D2NT13 Type I site-specific restriction-modification system, R (Restriction) subunit n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NT13_9MICC Length = 1111 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 125/1022 (12%), Positives = 298/1022 (29%), Gaps = 148/1022 (14%) Query: 124 KDYDFPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIA 183 DY P F + + + + + + + ++ + Q L + Sbjct: 11 PDYSHPTEGFTERILSSDTFTVLGDRTEAPHYDEWAKANEKRKGLQTEAQLEAELIDTLR 70 Query: 184 ILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLN--LS 241 + A + L QL N T E AY + L+ Sbjct: 71 DQGYEYLSNLTDETALIRNLREQLERFN------TRPEEGAYGPNSGFHFTDEEFDRLLT 124 Query: 242 EEESR---------------FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT 286 E +R ID +L + + P + + ++ Sbjct: 125 EHLARSNDGILEKAKLIQEERFIDFRLDD----GTLRNIMLIDAVYPARNRMQVVNQYRV 180 Query: 287 GKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEH 346 + D + V P+ +E K+ ++ + + RY Sbjct: 181 PAANGKTRNRYDVTILVNGLPLVHIELKKRSVGIQEAFQQIERYQGAGFQEDTHRFFEYA 240 Query: 347 YSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNM 406 + +Y ++ + + + +G + + S ++ Sbjct: 241 QIFIISNGVKTKYYSNTVRHKHIEDLQEVRRKNPSGGSAGKSFEFTSYWADAKNNRISDL 300 Query: 407 SKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQ- 465 + L +L L +R YQ A + + + Sbjct: 301 MLFARTFLAKNALANILTRYCILTVD-------QDLLVMRPYQIAATERIINCVKTADKS 353 Query: 466 ------------EILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGA 513 + TG+GKT T+ RL ++ ++++F+VDR+ L Q + Sbjct: 354 KNSDKTFGTKKAGGYIWHTTGSGKTLTSFKTARRLAETGLVEKVIFVVDRKDLDYQTMLE 413 Query: 514 FEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVV 573 + + D+ +S + L+D+ + T I V T+ L T + + I+ Sbjct: 414 YNNF--QADSVSSSSSTRQLSDRLADRGTSIVVTTIHKLSNLTNAEPKHPVYGQRVAIIF 471 Query: 574 DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPV 633 DE HR + F++ + I D A P T ++FGE + Sbjct: 472 DECHRSQFGQMNANIKKY-FKNYCMFGFTGTPIFDGNSA------GGPGTTTGEVFGECL 524 Query: 634 YRYTYRTAVIDGFLIDQDPPIQ-------------IITRNAQEGVYLSKGEQVERISPQG 680 + YT A+ DG ++ A E +++E+++ Sbjct: 525 HTYTVVDAIRDGNVLPFHLEYTNTSPTFACLEESVYAEEIAAERAATPDAKELEKLAKAK 584 Query: 681 EVIN--DTLEDDQDFEVADFNRGLVIPAFN------RAVCNELTNYLDPTGSQKTLVFCV 732 V+ + +E + + +++R + R + +Y++ +++ Sbjct: 585 AVLESPERIEAIATYILDNYDRKTNQKERDYDLKKSRTINKVTEHYVERVRGFNSILATS 644 Query: 733 TNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKER------- 785 + A + L +++ + D K+ +I F + Sbjct: 645 SIDAACTYYDALNTLQEERIAEGVLDPAKKLKVAIIYSQGNGGQLIDTFGEGENYEFPTG 704 Query: 786 ------------------------------------------LPNIVVTVDLLTTGVDIP 803 ++++ V++ TG D Sbjct: 705 DTGSRMDGFLEDYNTMFGTNFSTDGDSFDNYYKDVSRRMKVRELDLLIVVNMFLTGFDSK 764 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVR 863 ++ + + ++ L Q R R+ V K S + D+ + T + Sbjct: 765 TVNTLWVDKNLKMHGL-VQAYSRTNRIFNSV-KRSGNVVCFRDLEQATKDAFT---LFGD 819 Query: 864 PKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQ 923 + +I + YK + R E+ + + D E + Sbjct: 820 TENSDGQSALDIAFTRPYKEAFEEYREAVTTLREEF-----GMDEGGSITVDTPEEKARY 874 Query: 924 VRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNK-----LPGFIARLEKLKTDINNL 978 ++ ++++ + + + +R+ G ++ + + +++ Sbjct: 875 IKLMNDVLELRQELRVHD--EFIRDGGDELISDYDMQGYTGVYNDIYDEIREMRKAREEG 932 Query: 979 NDAPIFLDIDDEVVSVKSLYGDYDTPQD-----FLEAFDSLVQRSPNAQPALQAVINRPR 1033 D D ++ + + Q+ L ++ + + +A ++ +N Sbjct: 933 TDEGEDRTDDVDLFANVHFLTELVKQQEIGVDYILALIEAAHESNSDATEDIERAVNSSS 992 Query: 1034 DL 1035 +L Sbjct: 993 EL 994 >UniRef50_O27023 Type I restriction enzyme n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O27023_METTH Length = 1013 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 117/860 (13%), Positives = 251/860 (29%), Gaps = 108/860 (12%) Query: 271 ARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN---NIDVPARLNES 327 P N A D +LF+ P+ +E K + + Sbjct: 104 DHDTPSHNSFTASRQVVFRRGDQTIRTDIMLFINGIPLVNIELKNPVGMSETWADAYRQI 163 Query: 328 YRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQR-FKIPFCYSTNGREYR 386 Y K + + + + + ++ K+P G E+ Sbjct: 164 KDYEKTVPELYKYVQMGVAAEDFARYFPIVPWLDEVPTFEWRETDGKLPQKSRKQGHEHH 223 Query: 387 ATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLR 446 + + RPE +L+ + + + ++ +++ R Sbjct: 224 TGLPAADILP----------------LLRPERVLDFIRNYIYIRTEF----GSTTKVIAR 263 Query: 447 YYQEDAVRAVEKAI------VKGQQEILLAMATGTGKTRTAIAMMFRLIQSQR--FKRIL 498 + Q A + + + + L+ G+GKT T I +L + + + Sbjct: 264 HMQYHAAERIVERVLRNIRGEDKRNRGLIWHWQGSGKTLTMIFAASKLYRMKELENPTVF 323 Query: 499 FLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTK----IHVATVQSLVK 554 F+VDRR L EQ I+ I I L D + + + +Q Sbjct: 324 FIVDRRELEEQLYAELAALEIHQPE--RIESIAELKRTIASDDYRGKRGLFITLIQKFTD 381 Query: 555 RTLQSDEPM--------PVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRI 606 + + + + +DEAHR ++ Sbjct: 382 KLDDITAELREHGGETIMDRKNVIVFIDEAHRSQYGLLAAQMKDMLR------------- 428 Query: 607 LDHFDAVKIALTATP----ALHTVQIF-----GEPVYRYTYRTAVIDGFLIDQDPPIQII 657 A T TP T F + +++Y ++ DGF + ++ Sbjct: 429 ----SAFFFGFTGTPISKRERDTYDRFAYPPEEKYIHQYFITDSIRDGFTVKITYQPRLA 484 Query: 658 TRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTN 717 + +L VE + D E + ++ L P + ++ Sbjct: 485 GDVHLDRKHLEAFIGVEFEELPESIRKDVEESVKR-KLDTIKTILENPRRIELIAEDIAK 543 Query: 718 YLDPT--GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQ---------------LEHDAI 760 + G K +V + + EL +Y + + + + Sbjct: 544 HFKENIDGRFKAMVVAPSRRACVLYKRELDRHLPPEYSEIVMTYTPRDEEIIRAYDEELM 603 Query: 761 IKITGDADKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRIL 819 K G + + + ++ RF +R P I++ D+L TG D P + + + ++ L Sbjct: 604 DKYHGRNHHEIKNL--VLERFRDPDRNPRILIVTDMLLTGFDAPILQTMYLDKPLKEHRL 661 Query: 820 YEQMKGRATRLCPEVNKTSFKIFDCVDIY-----STLESVD-TMRPVVVRPKVELQTLVN 873 Q R R +V K + I D + + E V ++ Sbjct: 662 L-QAVARTNRPYRDV-KEAGLIIDYIGVMGAELRRAFELYSKEEYEGAVYDMESMKREYE 719 Query: 874 EITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQD 933 E+ ++ + V + L + + + L + Sbjct: 720 ELLRETLRIFSDLEWDGMDIEVLSDAVELITSDEELEKKFTENYRELRRLFELLSDQPFI 779 Query: 934 AAGVNFNGFASRLREKG-------PHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLD 986 G+ + + + P AE + + + + P+ Sbjct: 780 RHGLKDYRWLTVIYTYYQRVVSRKPSVEAETERYYQKTLKYIHRTTEFREIESKLPVIEF 839 Query: 987 IDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEW 1046 D +++ + D + +S V R+ P ++V + L + + ++ Sbjct: 840 DSDYFENLRKVRDIRDKAALTVYTLNSYVLRNGTRNPIYESVAEKVERLLEQWREKTMDY 899 Query: 1047 FDRQHFEESSLRKAWKETRN 1066 + + +R+ WKE R Sbjct: 900 EELYREGAAIIREIWKEERR 919 >UniRef50_A1SRA3 Type III restriction enzyme, res subunit n=4 Tax=Bacteria RepID=A1SRA3_PSYIN Length = 860 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 156/681 (22%), Positives = 258/681 (37%), Gaps = 130/681 (19%) Query: 238 LNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 +N +E E+R LI +L GW +++ R E G+ G + + Sbjct: 1 MNRNESETRADLISPKLALDGWGTTERSI-----IRREFGITAGRI---LGGGKRASSLS 52 Query: 297 ADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 +DYVL + +A VEAKR ++ + ++ Y++ Sbjct: 53 SDYVLEFQGRKLAAVEAKRESLSYTEGVRQAKDYAQRLQ--------------------- 91 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGRE-YRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 F Y+TNG + Y+ M T + +M + E Sbjct: 92 -----------------CRFAYATNGHDIYQIDMLTGFEQLVDNYLSPADMWRLCFEPVT 134 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 + + + + Q + G + RYYQE+A+ +AI G+ ILLA+ATGT Sbjct: 135 GKTEPDYTATWRTRFAQIPFEFKGDWQ--PRYYQENAINQALEAIALGKDRILLALATGT 192 Query: 476 GKTRTAIAMMFRLIQSQR-------------FKRILFLVDRRSLGEQALGAFEDTRINGD 522 GKT A ++L S+ RILFL DR L +QA F D Sbjct: 193 GKTCIAFQTAWKLFHSRWSLQAAKNPSNAKKRPRILFLADRNILTKQAFNDFGAFG--ED 250 Query: 523 TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQ------------------------ 558 I + K + I +A Q+L+ + Sbjct: 251 AVVRITPSEIKKAKGVPKNASIFMAIFQTLMTDSASNPTNDSDEEELPEDEDYSLPIVTD 310 Query: 559 ----SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAV 613 + P +D I++DE HRG D+ S++R IL++F AV Sbjct: 311 TSNCNFRQYPEDFFDFIIIDECHRGGANDE----------------SSWRDILNYFAPAV 354 Query: 614 KIALTATPALHT----VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSK 669 ++ LTATP + FGEPVY YT + + DGFL + + Sbjct: 355 QLGLTATPKRTDNVDSYKYFGEPVYSYTLKEGINDGFLTPFKV---YPIVGTMDEYQYTP 411 Query: 670 GEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLV 729 G+ V E + ++ DFNR + +P + + ++++P KT+V Sbjct: 412 GDAVTF--------KGEPEAGRVYKEGDFNRIITMPQREQKRVHYWMDHINPHD--KTIV 461 Query: 730 FCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNI 789 FC T HA MV + + +K ++IT + N++ +P I Sbjct: 462 FCGTQEHAGMVRDYINQYAVQKGWTTNPTYCVRITANDGAAGENDLRTFCD-NEKTIPTI 520 Query: 790 VVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYS 849 + T L+TGVD ++ NIV +R + I ++Q+ GR TRL K+ F ++D V + Sbjct: 521 LTTSRKLSTGVDARNVRNIVLMRPCNNMIEFKQIIGRGTRLYD--GKSFFTVYDFVKAHH 578 Query: 850 TLESVDTMRPVVVRPKVELQT 870 + + + + Sbjct: 579 NFADPEWDGEPLPPKEKPDEQ 599 >UniRef50_D0KYE6 Type I site-specific deoxyribonuclease n=2 Tax=Proteobacteria RepID=D0KYE6_HALNC Length = 783 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 186/861 (21%), Positives = 296/861 (34%), Gaps = 139/861 (16%) Query: 240 LSEEESRFL-IDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 ++E E+R ID L AGW + + R E + E G + G AD Sbjct: 1 MNEAETRAEHIDPALAAAGWGVVAGSR-----IRREYPITLGRIE---GAGKRGKALTAD 52 Query: 299 YVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 YVL +AVVEAK N + + ++ YS Sbjct: 53 YVLEYRNTKLAVVEAKAWNKPLTEGVGQAKDYS--------------------------- 85 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 + I F Y+TNG GI+ D+ + L + P+E Sbjct: 86 -----------GKLAIRFAYATNG----------QGIYGIDME--SGVEAELANYPSPDE 122 Query: 419 LLEMLGSEPQKQNQWFADNPGMSE---LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGT 475 L + FA+ P RYYQ+ A+ V AI Q ILL +ATGT Sbjct: 123 LWARTFASQNIWRDRFAEVPFEDRGGYFQSRYYQDIAIERVLAAIADHQSRILLTLATGT 182 Query: 476 GKTRTAIAMMFRLIQSQRF-------------KRILFLVDRRSLGEQALGAFEDTRINGD 522 GKT A + ++L S+ RILFL DR L QA AF D Sbjct: 183 GKTFIAFQLAWKLFHSRWNLRDWQREAEPSRRPRILFLADRNILANQAFNAFSAF--PED 240 Query: 523 TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP------MPVARYDCIVVDEA 576 I + + Q+ + +P P +DCI++DE Sbjct: 241 ALVRIDPADIRKQGRVPKNGSLFFTIFQTFMSGQDAEGQPAPYFGDYPPDFFDCIIIDEC 300 Query: 577 HRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPAL----HTVQIFGE 631 HRG D+ S +R IL +F AV++ LTATP T Q FGE Sbjct: 301 HRGGANDE----------------SNWRGILAYFAPAVQLGLTATPKRKDNVDTYQYFGE 344 Query: 632 PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ 691 PV+ Y+ + + DGFL + + + E V +P ++ +E + Sbjct: 345 PVFVYSLKDGINDGFLTPFRV----------KQIATTLDEYV--YTPDDTLVEGEIEAGK 392 Query: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKK 751 +E ADFN+ + I + +D +KT+VFC T HA V + + Sbjct: 393 RYEEADFNKIIEIKEREQKRVEIFMAQIDQ--REKTIVFCATQEHALAVRDLINQIKSSS 450 Query: 752 YPQLEHDAIIKITGDADKDARKVQTMITRFNKER--LPNIVVTVDLLTTGVDIPSICNIV 809 P ++T + + F +P I+ T L+TGVD ++ NIV Sbjct: 451 NPDY----CQRVTANDGARGEHY---LRDFQDNEKTIPTILTTSQKLSTGVDARNVRNIV 503 Query: 810 FLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQ 869 +R V S I ++Q+ GR TRL K F I+D V + + + P+ Sbjct: 504 LMRPVNSMIEFKQIIGRGTRLYD--GKDYFTIYDFVKAHHHFNDPEWDGEP-LEPEPTDP 560 Query: 870 TLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDE 929 ++ S+ ++ + + D + Sbjct: 561 RPPQPPSEPTPPDGVREPSSSYERKPKVKVQLSDGKARTIQHMMSTSFWHPDGTPMSAQQ 620 Query: 930 LCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDD 989 + G F E + L + + L + +D + Sbjct: 621 FMESLFGRLPEFFKD---EDELRALWSDPETRKRLLEGLAEKGFGTDQLREMQKIIDAQN 677 Query: 990 EVVSVKSLY-GDYDTP---QDFLEAFDSLVQRSPN--AQPALQAVINRPRDLTRKGLVEL 1043 + Y TP +D + +L+ N Q L V+++ + + L + Sbjct: 678 SDLFDVLAYVAYAQTPLSREDRADRAMALISSHFNSKQQVFLDFVLSQYISVGVEELDKT 737 Query: 1044 QEWFDRQHFEESSLRKAWKET 1064 + + S+ A + Sbjct: 738 KLGSLLRLKYHDSINDAIADL 758 >UniRef50_Q4A127 Type-1 restriction enzyme R protein n=77 Tax=cellular organisms RepID=HSDR_STAS1 Length = 930 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 136/973 (13%), Positives = 292/973 (30%), Gaps = 150/973 (15%) Query: 164 TQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERK 223 Q+E + + + L + E + R E + N + E +R Sbjct: 3 YQSEFALETEMMEQLKSNGYETVTIRNEQQLLDNFRSILNERHADKLNGDPLTDKEFQRL 62 Query: 224 AYHKEITDQAIKRTLNLSEEESRFLIDAQ-LRKAGWQADSKTLRFSKGARPEPGVNKAIA 282 E +R L D L++ D + S NK Sbjct: 63 LTMINGKGIF---------ESARILRDKMPLKRD----DESEVYLSFLDTRHWCQNKFQI 109 Query: 283 EWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRET 342 D+T + D + + P+ +E KR ID+ N+ RY K G R Sbjct: 110 TNQVSVDDT-YKARYDVTILINGLPLVQIELKRRGIDINEAFNQVMRYRKQNYTGLFRYI 168 Query: 343 LLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRD 402 L S + + + + + +E Sbjct: 169 QLFIISNGIDTRYISNNDGEIYKSH---------MFYWSDKENN---------------R 204 Query: 403 TRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVK 462 +++ + RP + +M+ + + +R YQ AV A+ + Sbjct: 205 INTLNEFTETFLRPCHIAKMISRY------MILNETDNILMAMRPYQVHAVEALIHQATE 258 Query: 463 GQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD 522 + TG+GKT T+ L + K+++FLVDR+ L Q F + Sbjct: 259 TSNNGYIWHTTGSGKTLTSFKASQVLSEQDDIKKVIFLVDRKDLDSQTEEEFNKF--SKG 316 Query: 523 TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYD--CIVVDEAHRGY 580 + + + L + + S + V T+Q + K + E + + D ++DE HR Sbjct: 317 SVDKTNNTAQLVKQLKDKSLPLIVTTIQKMSKAIQNNAEALDQYKTDKVVFIIDECHRSQ 376 Query: 581 ILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP---------ALHTVQIFGE 631 D + + +A T TP T IFG Sbjct: 377 FGDMHRIVRQHFN-----------------NAQYFGFTGTPRFEENQSQDGRSTADIFGR 419 Query: 632 PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ 691 ++ Y + A+ DG ++ I + + E VE I+ ++D Sbjct: 420 CLHTYLIKDAIHDGNVLGFSVDY--INTIKAQNIDTETDELVEGINTDEVWLSD------ 471 Query: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDP---TGSQKTLVFCVTNAHADMVVEELRAAF 748 + +T D + + + + Sbjct: 472 --------------QRVELIARHITENHDKYTRNRQYSAIFTVQSIPALVKYYDAFKKIS 517 Query: 749 KKKYPQLEHDAIIKITGDADKDARKV---------QTMITRFN----------------- 782 K L+ + + +++ +V + +I +N Sbjct: 518 KDYEHPLKVAGVFSYAANEERNEGEVDEAHSRGKLEEVIQDYNLNFGTNFSTDTFQEYFN 577 Query: 783 ----------KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 K+ ++++ V++ TG D + + + ++ L Q R R+ Sbjct: 578 HISKNVKKGVKDNKIDVLIVVNMFLTGFDSKVLNTLYVDKNLKYHDL-IQAYSRTNRV-E 635 Query: 833 EVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFA 892 + K KI + D+ ++ + L +E + E + Sbjct: 636 KETKPFGKIVNYRDLKQNTDNALKLFSQTEDTDRVLMRDYDEYKAEFVDALAELKAVALK 695 Query: 893 EHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREK-GP 951 +Q+ + ++ + F + + + + G+N F + Sbjct: 696 PQDMDQVQDENEKKAFVEAFRLVSKLVLRLKAFDEFDFTKANIGMNEQEFEDYKSKYFAI 755 Query: 952 HWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAF 1011 + + ++ L + +I L + I + ++V L + ++ + Sbjct: 756 YDEVKPKRGEVEKVSILNDIDFEIEILRNDRINVSYIMDLVRQIDLKDKAEQQRN-RDQI 814 Query: 1012 DSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAA 1071 ++ + + L+ RDL R+ + ++ E ++ +A+ N + Sbjct: 815 RRMLDNADDPTLRLK------RDLLREFIDDVIPELSE----EDNIDEAYILFENAKRES 864 Query: 1072 RLIGHIRRAAVGD 1084 ++ AV + Sbjct: 865 EFNQFAQQQAVDE 877 >UniRef50_A1RES7 Type I site-specific deoxyribonuclease, HsdR family n=5 Tax=Gammaproteobacteria RepID=A1RES7_SHESW Length = 1053 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 154/1079 (14%), Positives = 307/1079 (28%), Gaps = 131/1079 (12%) Query: 160 EKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARL-AALEAQLAEKNAELAKQT 218 +K + A + Q + G E QE + L L + N + Sbjct: 7 DKVERPAIAQLHQLGWRYVPGKTLAPEHSNQERDYLRDVVLVKRLTQAIERINPWI---N 63 Query: 219 EQERKAYHKEITDQAIKRTLNLSE--EESRFLIDAQLRKAGWQADSKTLRFSKGARPEPG 276 E+ + +EIT + + ++ + + G +T++ Sbjct: 64 EENLRKVVREITHPQCAGLMEYNHGFYQTMVGYLSVEQDIGKGKKGQTVKLIDFDDVSNN 123 Query: 277 VNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPAR--LNESYRYSKCF 334 ++ T D V FV P+AV+E K I P +++ RY+ Sbjct: 124 EFICTNQFKVEG--TKQTIIPDIVCFVNGLPLAVIECKSPFISTPVACGIDQLRRYANQR 181 Query: 335 --------DNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGK----------------- 369 + F L+ D + Sbjct: 182 HPEDFEGAEKLFWYNQLMVSTCRDIARVGTISSPAQYYGDWKDAYPLTDAQIAQVDSDNV 241 Query: 370 ----QRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGS 425 ++ + ++ + V + L E L+++ + Sbjct: 242 VPLAKKLTVEQPVASVDAAGSEQPQVAEPPADYQVAKVTAQQRLLAGMFSRENFLDIVRN 301 Query: 426 EPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQE----ILLAMATGTGKTRTA 481 + D+ + + RY Q AV V + G+ ++ G+GK+ T Sbjct: 302 FILFEP----DDGRLIKKVARYQQFRAVNKVIHQLKTGKTRKEKSGVVWHTQGSGKSLTM 357 Query: 482 IAMMFRLIQSQRFK--RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE 539 + + ++ K +++F+ DR L EQ F+ G+T + + L D + Sbjct: 358 VMLAVKMRHDPELKQYKLVFVTDRTQLDEQLSTTFQ--GAQGETVYNADSVAALRDLLKK 415 Query: 540 DSTKIHVATVQSLVKRTLQSDEPMPVARYDC-----IVV--DEAHRGYILDKEQTEGELQ 592 DS+ + A VQ ++ + + + I+V DEAHR T Sbjct: 416 DSSDLVTAMVQKFQDAEKEAQQQGDKSFVNINTSDKIIVLADEAHRTQFGGLATTINAAL 475 Query: 593 FRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQI---FGEPVYRYTYRTAVIDGFLID 649 +A KI T TP L T ++ FG + +Y AV DG + Sbjct: 476 P-----------------NAPKIGFTGTPLLKTQKMDTAFGGYIDKYKINEAVEDGATVR 518 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 R + V + + + E + + V R PA R Sbjct: 519 LL----YEGREVKTAVAGESLDALFEEYFGDYTKEEQQEIKRKYGVEKAVRE--APARIR 572 Query: 710 AVCNELTNYLDPT---GSQKTLVFCVTNAHADMVVEELRAAFKK------KYPQLEHDAI 760 VC +L + K ++ + A + + L + I Sbjct: 573 WVCIDLLKHYRERIRPDGFKAMIVVGSRHAATLFKKTLDELKAPPSEVIISGDHNDPQYI 632 Query: 761 IKITGDADKDARKVQTMITRFNKE---------------RLPNIVVTVDLLTTGVDIPSI 805 + T D + +I F K ++ D+L TG D P Sbjct: 633 AQYT-----DKVHQKKVIANFKKPFGTDAPGTDEKQRKFDNTAFLIVKDMLLTGFDAPIA 687 Query: 806 CNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPK 865 + RK++ L Q R R K + D + S L + + Sbjct: 688 QVMYIDRKLQDHTLM-QAIARVNR--NYKGKECGYVVDYYGLTSYLTDALELFS-SDDIE 743 Query: 866 VELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVR 925 Q+L +E+ + + + + + KQ+ Sbjct: 744 GTYQSLKDELPKLQAAHTRLKAFFKGVTSDDVDDYVVVLKDDAVRAQFEVAYKRFAKQLN 803 Query: 926 RLDELCQDAAGVNFNGFASRL----REKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDA 981 + + F ++ R + ++ + +++ Sbjct: 804 VILPDASAKPYIPDMTFFGKVHHAARNRYRDDGMDLLDVGEKVRQLVDEHILSTGVDPKI 863 Query: 982 PIFLDIDDEVVSV-KSLYGDYDTPQDFLEAFDSLVQRSPNAQPA-LQAVINRPRDLTRKG 1039 P + + + + A + + P +++ R RD+ K Sbjct: 864 PPVDLLAANFKEHVQKIKSPESKASEIESALKHHININLEDDPEYYRSLSLRLRDIIEKT 923 Query: 1040 LVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFE-ERVDHAL- 1097 + + + L A K+ + + + + + + +D AL Sbjct: 924 AGNWERQLELLLDMTNDLSTAHKQAAQNFGLSETEFAFYNILLAEVTRIHDGDMIDEALH 983 Query: 1098 TRIKGENDWSSEQLSWLDRLAQALKEK------VVLDDDVFKTGNFHRRGGKAMLQRTF 1150 +IK + L ++ ++ V F + A LQ F Sbjct: 984 EQIKSTTQALVQVLDDATQIVDFFNKEDEIKRMKKKIKRVILEQPFGDKALVATLQDRF 1042 >UniRef50_Q60295 Putative type-1 restriction enzyme MjaXP R protein n=2 Tax=Methanocaldococcus RepID=T1RH_METJA Length = 1042 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 149/1010 (14%), Positives = 329/1010 (32%), Gaps = 99/1010 (9%) Query: 148 LTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQL 207 +K++ + + A ++ + L + + L + E E+ A L + Sbjct: 18 DKMKKEAAKLNEDYVVENAAIQRL-KNLGYSYKHGSELTPEYNERESYRDAILK--NRFI 74 Query: 208 AEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLID---AQLRKAGWQADSKT 264 TE+ +K +T+ + LI+ + ++ G + ++ Sbjct: 75 KAIKNINPWLTEELALKVYKTVTNIDNPDFNMRGKIFYEMLINGVKLEFKENG-EKKTRF 133 Query: 265 LRFSKGARPEPGVNKAIAEWPTGKD-ETGNQGFADYVLFVGLKPIAVVEAKRN--NIDVP 321 ++ ++ E G D V+F+ PIA+ E K N Sbjct: 134 VKLIDFENINKNEFLVANQFEVEYYYENGRFRRPDLVVFINGIPIAIFEFKSPKSNQTAK 193 Query: 322 ARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKI-PFCYST 380 N+ K + +L E P + RF + S Sbjct: 194 DAFNDHKTKMKDIPQLYQYAQILVVSDGLETKYGSPTSD--------WDRFFVWEGVESD 245 Query: 381 NGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGM 440 + E + ++ ++ L + E L+E L Sbjct: 246 DDVEVIEVDNYGNTMYKYKGNPYTSLDILLMGLFKKEHLIEFLEDFI---------IHDK 296 Query: 441 SELGLRYYQEDAVRAVEKAIVK---------GQQEILLAMATGTGKTRTAIAMMFRLIQS 491 ++ YYQ V+ +K ++ ++ A GTGK+ T + + ++ Sbjct: 297 KKIIATYYQFYTVKKAVDRTIKSVLYGETPEDRRIGIVWHAQGTGKSITMLFYAKKALKQ 356 Query: 492 QRF--KRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATV 549 + ++FL DR L EQ F + SI +++ L K P I AT+ Sbjct: 357 KELNYPLLVFLTDRLELDEQLYNVFSSVFSEAERAESIAELQELIKKTP---GGIIFATI 413 Query: 550 QSLVKRTLQSDEPMPVARYDCIVV-DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILD 608 Q +++ P R + I++ DEAHR + Q + Sbjct: 414 QKFGRKSKDEHYPFLTDRNNIIIIADEAHRSHYGTLAQNLRKAIP--------------- 458 Query: 609 HFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEG 664 +A +A TATP T +FG+ + Y A G ++ +++ + Sbjct: 459 --NASFLAFTATPIDYKDRSTFLVFGDYISAYPIDKAKRHGVVVPIYYEARLVELHLTNE 516 Query: 665 VYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS 724 + +++ +++++ A + ++ + V ++ + + Sbjct: 517 FIDLEFDEISERVANDPETKESIKEVF----AKLEKIMLTEDYLSKVSKDIIEHFNKRLQ 572 Query: 725 ---QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKD----ARKVQTM 777 K +V ++ A + + + + + ++++ + Sbjct: 573 DFDGKAMVVTISRKVAVELYKWITKQPNAPKIAVVMSGNKSKDPEDFHPHIRTKKELENL 632 Query: 778 ITRFNKER-LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNK 836 F +V+ VD+ TG D+P + + FL+ +++ L Q R R+ +K Sbjct: 633 AKEFKDPESDLKMVIVVDMWLTGFDVPCLHTMYFLKPMKNHSLA-QAIARVNRVF--KDK 689 Query: 837 TSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSH 896 I D + I + ++ + +L T + + + + + + Sbjct: 690 PGGLIVDYIGIAD--DLSKSLSKYSSEARKDLMTDIKVVIEEMKRRYEKVTSYFKNINYK 747 Query: 897 EQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAE 956 + L++ + Q D+ + N PH Sbjct: 748 D--------WKKLSSEDLSLLTVKAYQRVAKDDNTKKEFVRNVIALKKLYLLARPHPETI 799 Query: 957 VFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQ 1016 F ++K+ + I D++++ ++SL + ++ ++ F+ L + Sbjct: 800 GIKDDLEFFEMIKKMIVKYSTKKIREISQDLEND---IQSLISKSISAKELVDVFEMLKK 856 Query: 1017 RSPNAQPALQAVIN-----RPRDLTRKGLVELQEWFDRQHFEESSLR-KAWKETRNEDIA 1070 P ++ +D R L+++ R ++ +R K + E NE I Sbjct: 857 EKPELSVLSDEFLSEIAKIEYKDYVRDVLIKILNDDIRVRMAKNPIRFKKFSERLNEVIE 916 Query: 1071 ARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQA 1120 I I A + + L + + A K + E+L++ D L Sbjct: 917 KYRIKVITTAEMIEELVNLAKEIRKAAEEGKEL-GLTEEELAFYDLLLSY 965 >UniRef50_A1WBU3 Type I site-specific deoxyribonuclease, HsdR family n=14 Tax=Bacteria RepID=A1WBU3_ACISJ Length = 1000 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 151/1003 (15%), Positives = 309/1003 (30%), Gaps = 104/1003 (10%) Query: 181 YIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNL 240 Y A E +Q E + L +L + A + ++ + + Sbjct: 46 YAAPSEVPRQIQEVLVEPWLRDALIRLNPEIAAQPDRADEVLYKLRAIVLSVRSDGLIRA 105 Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 +EE + ++ + G + +R + N I + AD V Sbjct: 106 NEEMTAWMRGERSMPFGHNNEHVPVRLIDLD--DLSQNHYIVTQQYTYRAGPTERRADLV 163 Query: 301 LFVGLKPIAVVEAK---RNNIDVPARLNESYR-YSKCFDNGFLRETLLEHYSPDEVHEAV 356 L V P+ ++EAK + I + + Y K F+ Sbjct: 164 LLVNGLPLVLIEAKTPVKKCISWVDAAVQVHDDYEKFVPELFVCNVFSVATEGKAYRYG- 222 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 +P +++ G +++ + RP Sbjct: 223 --------------SIGLPV------KDWGPWHLDGDGE-DSQHHPLKSLKLSAESMLRP 261 Query: 417 EELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ-QEILLAMATGT 475 +L++LGS ++ RY Q +A + + ++ G ++ L+ G+ Sbjct: 262 HVVLDILGSFTLFATNKKKQR---IKIICRYQQFEAANKIVERVLAGYPRKGLIWHFQGS 318 Query: 476 GKTRTAIAMMFRLIQSQ--RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGL 533 GK+ + +L + +L +VDR L Q G F T + + L Sbjct: 319 GKSLLMVFAAQKLRMHAGLKNPTVLIVVDRIDLDSQITGTF--TGADIPNLEKADTREKL 376 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCI-VVDEAHRGYILDKEQTEGELQ 592 +D KI + T+ + + R + I +VDEAHR D + E Sbjct: 377 QQLLAQDVRKIIITTIFKFGEGPNSTKGGSLNDRSNIIALVDEAHRTQEGDLGRKMREAL 436 Query: 593 FRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFG------EPVYRYTYRTAV 642 +A LT TP +T FG + RY + ++ Sbjct: 437 P-----------------NAFLFGLTGTPINRADRNTFYAFGADEDEKGYMSRYGFEESI 479 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 DG + ++I + + + + + ++D +D+ A + Sbjct: 480 RDGATLKLHFEPRLIDLHIDKAALDAAYKDL------TGGLSDLDKDNLAKTAAKMAVLV 533 Query: 703 VIPAFNRAVCNELTNYLD---PTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDA 759 P R VC ++ + K + + EL + + Sbjct: 534 KTPERIRKVCEDIVEHFQAKVEPNGFKGQIVTFDRESCLLFKAELDKLLPPEATDIVMSV 593 Query: 760 IIKITGDA------DKDARKVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLR 812 + D+ + + ++ RF P +++ L TG D P + + + Sbjct: 594 QAADKKEHPEYAPYDRSRDEEERLLDRFRDPADPLKLIIVTAKLLTGFDAPILQAMYLDK 653 Query: 813 KVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKV-ELQTL 871 +R L Q R R E KT I D + I+ + + V+ V +Q L Sbjct: 654 PLRDHTLL-QAICRVNRTYSEQ-KTHGLIVDYLGIFDDVAAALEFDDQSVKQVVSNIQEL 711 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSET--IDKQVRRLDE 929 +++ ++ + G + +E L+A Q + + +E ++K L Sbjct: 712 KDKLPEAMQKCLAFFSGCDRSLQGYEGLIAAQQCLPNNEVRDNFAAEYSVLNKIWEALSP 771 Query: 930 LCQDAAGVNFNGFASRLREKGPHWS---AEVFNKLPGFIARLEKLKTDINNLNDAPIFLD 986 + S++ + S +++ L L ++ + D L Sbjct: 772 DTVLGPFEKDYKWLSQVYQSVQPSSGHGKLIWHSLGAKTIELIHQNVHVDAVRDDLDTLV 831 Query: 987 IDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSP---------NAQPALQAVINRPRDLTR 1037 +D +++ D ++ ++ AL+ + + Sbjct: 832 LDADLLEAVLSNPDPKKAKEIEIKLKRRLRGHGGNPKFKKLSERLDALKDRFESGQINSV 891 Query: 1038 KGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRR----AAVGDALKPFEERV 1093 + L +L E E + E R + L ++ V + +E V Sbjct: 892 EFLKQLLEIAKETLQAEKDVPSEEDEDRGKAALTELFNEVKTSETPIMVERVVTDIDEIV 951 Query: 1094 DH-ALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTG 1135 +G E L + K K+ D+++F+ Sbjct: 952 RLVRFPGWQGTQAGEREVKKALRK--ALFKYKLHADEELFEKA 992 >UniRef50_C9RRX7 Type I site-specific deoxyribonuclease n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRX7_FIBSS Length = 781 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 184/878 (20%), Positives = 313/878 (35%), Gaps = 143/878 (16%) Query: 240 LSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 ++E ++R ID +L++A W+ + +++ + E IA G E + D Sbjct: 1 MNESDTRRKKIDPKLKEALWEVTPDSAIYTEQSAYE------IAPGRIGHAERNPKK-ID 53 Query: 299 YVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 Y+L IA+VEAK++ +DV + ++ Y++ Sbjct: 54 YLLVYKGIKIAIVEAKKDELDVSEGVPQAKEYAE-------------------------- 87 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 R I F YS NG IW D++ + + P+E Sbjct: 88 ------------RMNIRFTYSCNG----------DKIWAIDMQ--TGEEGFVDAFPTPQE 123 Query: 419 LLEMLGSEPQKQNQWFADNPGMSE--LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476 L E L E P + RYYQE AV V AI + Q +LL +ATGTG Sbjct: 124 LWERLYPENNPLRDKLNAVPFNRDGGKSPRYYQEIAVNNVMDAISRKQDRVLLTLATGTG 183 Query: 477 KTRTAIAMMFRLIQSQRF-------KRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 KT A + +++ ++ RILFL DR L QAL F + + I Sbjct: 184 KTYIAFQICWKIFKAHWNVDGTERLPRILFLADRNILSNQALNDFGQF--DENAMCRITP 241 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSD--EPMPVARYDCIVVDEAHRGYILDKEQT 587 K I+ + Q+++ E P +D +++DE HRG D+ + Sbjct: 242 ESIAKSKGVPKGPSIYFSIFQTMMTSLNGKFVYENYPEDFFDLVIIDECHRGAANDESR- 300 Query: 588 EGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPAL----HTVQIFGEPVYRYTYRTAV 642 +R ILD+F A + LTATP +T + FG+PVY Y+ + + Sbjct: 301 ---------------WRDILDYFQRAYHLGLTATPKKNENANTYEYFGKPVYVYSLKQGI 345 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRG- 701 DGFL +I + N +Y P+ +V + ++ ++ + DF G Sbjct: 346 EDGFLTPYRV--RISSSNIDNYIY----------DPEDDVESGEIDPNKIYTETDFYHGN 393 Query: 702 LVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII 761 + I + E +DP +KT+VF T AHA ++ + + +K Sbjct: 394 IKIRERDEFRVEEFLKQIDP--DEKTIVFGATQAHAAILRDLINQHSRKPNVNY----CK 447 Query: 762 KITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 ++T D N++ LP I+ T L+TGVD ++ NIV +R V + I ++ Sbjct: 448 RVTSDDGDKGEADLKTFQD-NEKLLPTILTTSQKLSTGVDAKNVRNIVLMRPVNNIIEFK 506 Query: 822 QMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETY 881 Q+ GR TRL K F I+D V + ++ + D + Sbjct: 507 QIIGRGTRLFD--GKYFFTIYDFVGASKNFSDPEWDGEPIIDTPEPPN-GGDPDDDKGSS 563 Query: 882 KITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNG 941 + + + + Q + ++ D + Sbjct: 564 GGPRKPRPCKICGNLPCTCDAKTKEKRCIEIKLSANHVLRLQAQWQEKFMFDGELITLEQ 623 Query: 942 FASRLREKGPHWSAEVFN---------KLPGFIARLEKLKTDINNLNDAPIFLDIDD-EV 991 F L K P + + + + L L + ++ Sbjct: 624 FIKILFGKIPEFFKDSQDLRARWSDPTTREALLQNLSDNGFSKERLRQVQALTQNEKCDL 683 Query: 992 VSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQA----------VINRPRDLTRKGLV 1041 + V L +P + E + + N Q V N +L+ L Sbjct: 684 LDVLELIAYNKSPMERAERVRLMHEEILNEISEKQVPFMEFVLQQYVENGVDELSLNQLP 743 Query: 1042 ELQEWF--------DRQHFEESSLRKAWKETRNEDIAA 1071 EL + D+ L+K + + + A Sbjct: 744 ELVKLKYGTIKDACDKMGVTGKDLKKLFTDFQKTLYVA 781 >UniRef50_C9MRT3 Type I restriction-modification system, R subunit n=5 Tax=Bacteroidales RepID=C9MRT3_9BACT Length = 770 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 169/843 (20%), Positives = 299/843 (35%), Gaps = 122/843 (14%) Query: 239 NLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 +L+EE+ + I + KAGW+ + + + + A Sbjct: 11 DLTEEDIKLRFITPAINKAGWKNEHIRMEYY--------FTDGRVIFQGKVHARQTGKKA 62 Query: 298 DYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DY+LF KPIA++EAK NN + + ++ Y++ D Sbjct: 63 DYLLFHAANKPIAIIEAKDNNKPLGGGMQQAMEYAQILD--------------------- 101 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 IPF YS+NG G D + +L ++ P Sbjct: 102 -----------------IPFAYSSNG----------DGFLEHDFLTGKETELSLEQFPTP 134 Query: 417 EELLEMLGSEPQKQNQWFADN-----PGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 + L + + + Q N+ RYYQ AV +AI KG+ +L+ M Sbjct: 135 DALYQRIINAKQLNNEALKIIEQPFYSDSYTYEPRYYQRIAVERTVEAIAKGRDRVLIVM 194 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIK 531 ATGTGKT TA ++ RL S K+IL+L DR L +Q + +D + I Sbjct: 195 ATGTGKTITAFQIIHRLKASGTKKKILYLADRNILIDQTM--VQDFKPFKKVMTKI---- 248 Query: 532 GLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP---VARYDCIVVDEAHRGYILDKEQTE 588 + + ++H+A LV ++P +D I+VDE HRG D Sbjct: 249 --QGATIDSAYEVHMALYHQLVSNEEGVEDPFKQVQPTFFDLIIVDECHRGSAKDD---- 302 Query: 589 GELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA----LHTVQIFGEPVYRYTYRTAVI 643 SA+R++L++F A +I +TATP + + FGEPV+ Y+ + Sbjct: 303 ------------SAWRKVLEYFSTATQIGMTATPKAENGANNLDYFGEPVFTYSLLQGIQ 350 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV 703 DGFL I+ + Q + S + + + +E D R + Sbjct: 351 DGFLAPYRVTNSYISIDL----------QGFKPSDDEKDLLGRDIVQRLYERKDIGRDIA 400 Query: 704 IPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIK 762 V +T L G KT+VFC A+ + L + +++ Sbjct: 401 FTKRREIVAKRITKMLKQIGRMTKTIVFCTDIDEAEAMRSLLVN-LNTDLCNRDPRYVMR 459 Query: 763 ITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 ITGD + +++ I + P IV T +LL TGVD + IV +++ S ++Q Sbjct: 460 ITGDDNVGKKQLDNFID--VDQAYPTIVTTSELLATGVDCKTCGLIVIDKEIGSMTEFKQ 517 Query: 823 MKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYK 882 + GR TRL + K +I D + + + P + I D Sbjct: 518 IIGRGTRLRTDKGKWHLEILDFRNATAKFKDPKFDG--DPEPPQGKGPKIYTIPDKSPTI 575 Query: 883 ITEADGRSFA-EHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNG 941 ++E + E H + ++ ++G D +++ N Sbjct: 576 VSEPQRVKYLVEGEHIAITTEIVSVLGEDGRTMRTESVTDYTRKQI-----RKRYATLND 630 Query: 942 FASRLREKGPHWSA-EVFNKLPGFIARLEKLKTDINNLNDAPIFLDID-DEVVSVKSLYG 999 F E + + + + + + + + + D+ + Sbjct: 631 FVKNWTEAERKKVIVDELKDYSVLVDAVREKNPALAHADIFDVICHVAYDQPPMARRERA 690 Query: 1000 DYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRK 1059 + +++ F ++ AL L + L + + + K Sbjct: 691 NNVKKRNY---FAKYEGKAREVLEALLDKYADYGILNLEDSDILDTAPFNKIGKPQKIVK 747 Query: 1060 AWK 1062 + Sbjct: 748 LFG 750 >UniRef50_C5DB09 Type III restriction protein res subunit n=7 Tax=cellular organisms RepID=C5DB09_GEOSW Length = 1012 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 137/1037 (13%), Positives = 324/1037 (31%), Gaps = 108/1037 (10%) Query: 166 AEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAY 225 +E ++ L ++G Q + + L L + E + + E+ Sbjct: 6 SEKRFEEDIETYLLTEGGYVKGDQSNYDKERAIDLNQLIDFIKETQEKEWTRYEKIYGEE 65 Query: 226 HKEITDQAIKRTLNLSEEES--RFLID---AQLRKAGWQADSKTLRFSKGARPEPGVNKA 280 + + + + + R I +L+ A ++ ++ TL + Sbjct: 66 APKKLYKRLNDEIETNGLLHVLRHGITDRGVKLKIASFRPET-TLNEKTIRDYQANKLTV 124 Query: 281 IAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN--NIDVPARLNESYRYSKCFDNGF 338 I ++ T N D VL + PI +E K V + + F Sbjct: 125 IRQFA---YSTENHNTLDMVLSLNGIPIVALELKNQFKGQSVENGKKQFMYDRDPREKIF 181 Query: 339 LRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYR 398 + Y +++ GK +PF +NG + Sbjct: 182 QFNKRILVYFVVDLY-----EVWMTTKLDGKNTVFLPFNQGSNG---AGEVGGAGNPENP 233 Query: 399 DVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSE-----LGLRYYQEDAV 453 D T + + + +L+ K+ ++ + + + RY+Q D V Sbjct: 234 DGYATSYLWEKVLHKDSLMNILQRFMHLEVKKEKFIKNGKESVKTSSKLIFPRYHQLDVV 293 Query: 454 RAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLIQSQR------FKRILFLVDRRS 505 R + + + + + L+ + G+GK+ + + + L F ++ + DR Sbjct: 294 RKLVEDVRQKGSGENYLIQHSAGSGKSNSIAWLAYHLASLHNEDNESIFTSVIVVTDRTV 353 Query: 506 LGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP--EDSTKIHVATVQSLVKRTLQSDEPM 563 L Q +I D K D + +I + T+Q + + + Sbjct: 354 LDRQLQQTISSFDHTTGLVETIDDKKTSKDLRDAINNGKRIIITTLQKF--PVIYEEVEV 411 Query: 564 PVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAY------------------RR 605 ++VDEAH + ++ + Sbjct: 412 NKGSRFAVIVDEAHSSQTGKSAKKLKAALADTEEALREYAELEAEIEAEQLDFEDEIVQE 471 Query: 606 ILDHF---DAVKIALTATPALHTVQIFG--------EPVYRYTYRTAVIDGFLIDQDPPI 654 +L H + A TATP T+++FG +P + Y+ R A+ +GF++D Sbjct: 472 LLTHGRHKNLSFFAFTATPKEKTLEMFGTKQPDGTFKPFHIYSMRQAIEEGFILDVLQNY 531 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 + S+ ++ + + +++ F ++ Sbjct: 532 MTYKTYYRIAKNTSENPELSTTQGVKAIKRYQSLHPYTLQQKT---AIMVEQFRNVTRHK 588 Query: 715 LTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV 774 + G K +V + HA E + K+K + D++ Sbjct: 589 I------GGKAKAMVVTASRLHAVRYFHEFKKYIKEKGYDDIDVLVAFSGVVIDQNEEYR 642 Query: 775 QTMITRFNKER--------------LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 + + + + NI++ + TG D P + + +K+ S + Sbjct: 643 EETLNKTKDGKRIKESQLKEAFHSDDFNILIVAEKYQTGFDEPLLHTMFIDKKL-SGVKA 701 Query: 821 EQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVELQTLVNEITDS 878 Q R R P K I D V+ ++ + ++++ + + T Sbjct: 702 VQTLSRLNRTYP--GKEDTFILDFVNEAEDIKKAFQPYYEVTELDKEIDVNLIYDTRTKL 759 Query: 879 ETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVN 938 +KI + + + ++ +G + +++ + N Sbjct: 760 RNFKIYNDQDIKKLTRIYFKKGKQTEKDLGKIASHLIPIIKRYEELDEETQYKFRVTVRN 819 Query: 939 FNGFASRLREKGPHWSAEVFNKLPG---FIARLEKLKTDINNLNDAPIFLDIDDEVVSVK 995 FN + S + + + E+ + I + K + N+ D E Sbjct: 820 FNKWYSYITQLVRMFDKELHEEYIFTSYLIKFIPKNSAEKINIEDKVKLEYYKLEETFKG 879 Query: 996 SLYGDYDTPQDFL---EAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHF 1052 ++ + ++P++ L + D+ ++ P+ Q L+ +I R E + Sbjct: 880 TITLESNSPENVLKNSDNVDTGIKP-PDDQDLLENIIQRVNKRFEGKFTEADRVIVEGIY 938 Query: 1053 EE-----SSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWS 1107 ++ LR+ + E + + + + E+++ + + ++ Sbjct: 939 KKTVKGNEKLRRFARNNDEEMFNKSIFPDVFEKVAQEL---YMEQMNAYSKLFEDRSFYN 995 Query: 1108 SEQLSWLDRLAQALKEK 1124 + + + + L+ + Sbjct: 996 AVMEAVAKEVYKELRRE 1012 >UniRef50_B3EQD9 Type I site-specific deoxyribonuclease, HsdR family n=9 Tax=Bacteria RepID=B3EQD9_CHLPB Length = 1070 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 154/1061 (14%), Positives = 301/1061 (28%), Gaps = 157/1061 (14%) Query: 174 KLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQA 233 + + + + + +A + +E+N + A Q + K + T++A Sbjct: 36 ERQQRMSNVLLENVLRNQLKAINRINFKGGVYLFSEENIQSAIQKLKNIKYDGLQKTNEA 95 Query: 234 IKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGN 293 + + L + + G + S TL + PE E+ + + Sbjct: 96 VYDLITLGTAMEQTI-------EG-DSKSFTLNYVDWRNPERNAFHVTVEYSVERSRSTE 147 Query: 294 QGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKC--FDNGFLRETLLEHYSPDE 351 D VLFV P V+E K I+V +++S R F+ LL + + Sbjct: 148 TVRPDIVLFVNGIPFCVIECKSPQIEVDQAVSQSIRNQNDAYIPKLFVYTQLLLALNKNR 207 Query: 352 VHEAVPEYETS----WQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDT---- 403 A W++ + + + + +S + D D Sbjct: 208 AMYATTGTAVRFWSVWKEPGLTTDDETTKDTKSTKLKELERLIQESLDYRVDPDDFSLSS 267 Query: 404 -----------RNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDA 452 K+L RPE LLE+ G + RY Q Sbjct: 268 VLSVAQNLRIVTEQDKSLYALCRPERLLELAWKFTVFD--------GGLKKIARYQQYFV 319 Query: 453 VRAVEKAIVK-----GQQEILLAMATGTGKTRTAIAMMFRLIQSQRF--KRILFLVDRRS 505 +++ + + ++ ++ G+GK+ T + + L RI+ + DR Sbjct: 320 IKSTLNRVKQFAYSGSRKGGVIWHTQGSGKSLTMVMLTRNLALDPEISNPRIVLVTDRDD 379 Query: 506 LGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPV 565 L +Q F + N + L + E + I + K + Sbjct: 380 LDKQLGNTFAACGLEA---NRATSGRNLLELVAEKQSGIVTTLIHKFDKAYAVNKYRDES 436 Query: 566 ARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP---- 621 + ++VDE+HR + + R++ +A + T TP Sbjct: 437 SD-IFVLVDESHRTQFGS---------------FAARMRQMFP--NACYLGFTGTPLLKK 478 Query: 622 ALHTVQIFGEPVY-RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG 680 + FGE V Y+ AV DG ++ R+ + + + QG Sbjct: 479 EKNNFIRFGELVEPHYSISQAVEDGAVVPLL----YEGRHVEMTQNRAAVDLWFERHTQG 534 Query: 681 EVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD---PTGSQKTLVFCVTNAHA 737 + + + A+ +++ + K + A Sbjct: 535 LSKEQQADLKRKYARAEMLNK--ADQVIYMRAFDISEHFRANWQGTGFKAQLVAPGKVSA 592 Query: 738 DMVVEELR--------------------AAFKKKYPQLEHDAIIKITGDADKDARKVQTM 777 E L + K+ + + + Sbjct: 593 LKYQEYLNDIGMVGSEVVISPPDMREGFEETDDESNDEVVKFWQKMMKRYGSEEEYTKQL 652 Query: 778 ITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKT 837 I +F P I++ VD L TG D P + R +R L Q R R+ K Sbjct: 653 INQFKHGSDPEILIVVDKLLTGFDSPRNAVLYLCRVLREHTLL-QAIARVNRIHE--GKE 709 Query: 838 SFKIFDCVDIYSTLESVDTMRPVVV----------------------RPKVELQTLVNEI 875 I D ++ L+ TM +L L + Sbjct: 710 FGFIVDYANVLGELDKALTMYSAFEGFDESDLVGTLTSINSEIEKLPDRHSDLWDLFKTV 769 Query: 876 TDSETYKITE--ADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQD 933 S + E E + +L + + + + +ET DK + R + Sbjct: 770 KHSYDEEAYELLLADDQLREEFYTRLAEFAKTLAIALSSEKFLTETEDKTLSRYKSDLRK 829 Query: 934 AAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLN--DAPIFLDIDDEV 991 + KL + +++ +N D +F + +E Sbjct: 830 FQSLKVAVKLRYAESIDYRDYEPKIKKLLDTHIQADEVIQLNEPVNIFDEHMFNQVKEEQ 889 Query: 992 VSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQ-----AVINRPRDLTRKGLVELQEW 1046 + A + + PA + D K + +L+ Sbjct: 890 GVYQDKKTTGSKADTIAHATKKAITEKMDEDPAFYQKFSLLIQQAIEDFRAKRISDLEYL 949 Query: 1047 FDRQHFEESSLRKAWKETRNEDIAARLIGHIRRA-AVGDALKPFEE-------------- 1091 + K + ++ A A LKPF E Sbjct: 950 QQVVDIRNKVVGKVHDDVP------DILSGNEDAMACYGVLKPFFEDHAPGLEPVVADTA 1003 Query: 1092 -RVDHALTRIKGENDWSSE--QLSWLDRLAQALKEKVVLDD 1129 + L + K + W E Q ++ + L +++ + Sbjct: 1004 IAIYDILEKHKKVHFWDDEDAQKQAINEIEDYLYDELKTEK 1044 >UniRef50_C9KLJ8 Type I restriction-modification system, R subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLJ8_9FIRM Length = 772 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 182/841 (21%), Positives = 302/841 (35%), Gaps = 116/841 (13%) Query: 240 LSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFAD 298 LSEE+ + I L + W A + + + + FAD Sbjct: 8 LSEEDIKHRYITPALERV-WPASDIRMELA--------ITAGRVNIKGNMEARERPKFAD 58 Query: 299 YVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 YVL+ P+AVVEAK NN + + ++ Y++ D Sbjct: 59 YVLYTESGHPLAVVEAKDNNHTISFGMQQAKAYAQMMD---------------------- 96 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 +PF YS+NG G D +L + P Sbjct: 97 ----------------LPFAYSSNG----------DGFVEYDFLTGIECELSLDAFPTPA 130 Query: 418 ELLEMLGSEPQKQNQWFADNPGMS-----ELGLRYYQEDAVRAVEKAIVKGQQEILLAMA 472 EL+ E + RYYQ AV AI +GQ+ +LL MA Sbjct: 131 ELIARFKEEGHLTEEQVRVIEQPFYVSEGTFAPRYYQRVAVDRTLDAIARGQKRLLLVMA 190 Query: 473 TGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKG 532 TGTGKT TA +++RL ++ K+IL+L DR L +Q++ +D R + + Sbjct: 191 TGTGKTYTAFQIIYRLRKAGLGKKILYLADRNILVDQSIQ--QDFRPLASVIHKVNYASD 248 Query: 533 LTDKFPEDSTKIHVATVQSLVKRTLQS--DEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 D+ S +++ + Q L + E +D IVVDE HRG + Sbjct: 249 --DRTTITSYEVYFSLYQQLFGENDEERFRELFRPDFFDLIVVDECHRGSAKADSR---- 302 Query: 591 LQFRSQLDYVSAYRRILDHFD-AVKIALTATPALH----TVQIFGEPVYRYTYRTAVIDG 645 +R+ILD+FD A++I +TATP + FGEPVY Y+ R + DG Sbjct: 303 ------------WRKILDYFDTAIQIGMTATPKETAYVSNIDYFGEPVYTYSLRQGIDDG 350 Query: 646 FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIP 705 FL V ++ GE Q + +ED + + D++ +V+ Sbjct: 351 FLAPFRVI----------NVQMNIGEGWRPCKGQRDFFGREIED-RVYNNTDYDYNIVLE 399 Query: 706 AFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT 764 R V +TNYL T KT+VFC A A+ + L + + +++IT Sbjct: 400 DRIREVAARITNYLLHTDRMAKTIVFCADEAAAERMRHALAQQNADMMKKYPN-YVVRIT 458 Query: 765 GDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMK 824 G ++ I+ P I T LL+TGVD + IV + S +++Q+ Sbjct: 459 GSDPYGKSQLGYFIS--VASPTPVIATTSQLLSTGVDCKMVRLIVLDENITSMTMFKQII 516 Query: 825 GRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKIT 884 GR TRL + K SF I D + D P++ P E + T Sbjct: 517 GRGTRLRYDEGKRSFVIMDFRGVTRLFADPDWDGPIIEDPGFESGEGEGKPTGGGGKGGG 576 Query: 885 EADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFAS 944 + +A ++ D + V + + + F Sbjct: 577 RGGEPAVKPFVRADGCKVYTVQETIAVYDTDGKLLKQENVIDYTKENILEQFGDLHRFIH 636 Query: 945 RLREKGPHWS-AEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDT 1003 + A+ + +L+ + + I D+ + + Sbjct: 637 EWNAAEKKQAIADALATRGVDLDKLKHAMKMDDVDDFDFICHVAYDQKPLTRRERAEGVR 696 Query: 1004 PQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVE---LQEWFDRQHFEESSLRKA 1060 +DFL + + L+ ++ +DL K + + L+ ++ + K Sbjct: 697 RRDFLSRYSGAAR------AVLETLLESYKDLGIKNIEKTDVLRMKDFQKFGTPEHIGKL 750 Query: 1061 W 1061 + Sbjct: 751 F 751 >UniRef50_A0Q5T7 Type I restriction-modification system, subunit R (Restriction) n=3 Tax=Francisella novicida RepID=A0Q5T7_FRATN Length = 1036 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 144/1079 (13%), Positives = 320/1079 (29%), Gaps = 150/1079 (13%) Query: 141 NLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARL 200 + ++ + + E +++K+ + + N + +L Sbjct: 9 STFNSQFNEVPNTSENSLQQKSLKLLQKLGYELITKEQNREFRNSNLNDVILKDIAAKQL 68 Query: 201 AALEAQ--LAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEE-SRFLIDAQLRKAG 257 A + + E E++ + + ++E ++ L Sbjct: 69 AKINSYTYKGEVFEFSKADIERQIYNLNTLAAGGLLATNKKITESFLHAPSVEQNLPDG- 127 Query: 258 WQADSKTLRFSKGARPEPGVNKAIAEWPTG---KDETGNQGFADYVLFVGLKPIAVVEAK 314 S + +F E V E+ K E AD VLF+ PI V+E K Sbjct: 128 -SKKSFSFKFIDFDNFENNVFHVTEEFSVERNVKTEAEKTRRADIVLFINGFPIVVIELK 186 Query: 315 RNNIDVPARLNESYRYS--KCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRF 372 +++++V +++ Y K F LL + A + Sbjct: 187 KSDVEVSKGISQLIEYQADKEIPKLFEFAQLLIAANNHSPQYATTGSPAKY--------- 237 Query: 373 KIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQ 432 + T E +A ++ + R N+ L L+EM N Sbjct: 238 -----FLTWKEEDQALIQQLDSLVTN--RQPSNLDNLLVSLCSKSRLIEMFRFFILFDNN 290 Query: 433 WFADNPGMSELGLRYYQEDAVRAVEKAIVKG----QQEILLAMATGTGKTRTAIAMMFRL 488 + RY Q A+ A+ ++I ++ L+ G+GK+ T + L Sbjct: 291 --------IKKIARYQQYYAISAIIESISHYEGASRKGGLIWHTQGSGKSLTMVMATMYL 342 Query: 489 IQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVAT 548 + R++ + DR+ L +Q F ++ + + L D+ E+ T + +T Sbjct: 343 QKKIENARVVVVTDRKDLDKQISDTFRNSEVE---VVKATTGRNLIDEL-ENGTSVITST 398 Query: 549 VQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILD 608 + Q+ + + I+VDE+HR D + A +++ Sbjct: 399 IHKFETAVKQNCKLESSNIF--ILVDESHRSQSGDFHR---------------AMKKVFV 441 Query: 609 HFDAVKIALTATP----ALHTVQI--FGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ 662 H I T TP I F +++YT A+ D ++ +++ + Sbjct: 442 H--GCYIGFTGTPLLKSQKSDGSITKFNGLIHKYTIDQAIKDKAVLPLLYEARMVDQWIT 499 Query: 663 EGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDP- 721 + L+ R + +N+ + D + + F A+ ++ ++ Sbjct: 500 DEAALN-----RRFARYTNDLNEDQKKDLEQKWVSFRNVASSKQRLEAIVFDIEDHFTKN 554 Query: 722 --TGSQKTLVFCVTNAHADMVVEELRAAF-------------KKKYPQLEHD------AI 760 K + + A + + K+ + Sbjct: 555 IRGEGFKAMFATNSKVEAVRFKKLFDESGLINSAVSLSAPDVKEGNTDVNDTKKEVQAFW 614 Query: 761 IKITGDADKDARKVQTMITRFN-KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRIL 819 + + + F + +++ VD L TG D P + ++++ L Sbjct: 615 KDMLAKYGSEKAYNDYIDAEFKADDGDIELLIVVDKLLTGFDAPIAQVLYIDKELKDHTL 674 Query: 820 YEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT-MRPVVVRPKVELQTLVNEITDS 878 Q R RL K I D ++ L+ T + + ++ ++ + Sbjct: 675 L-QAIARVNRLYE--GKDYGLIVDYRGLFENLDKALTSYGALAGYDETDVTGTFADVKNE 731 Query: 879 ETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQD-AAGV 937 T S + D E + + L+ +D A + Sbjct: 732 LQKLKTSFSQLQDLFKSI-----THKNDQESYEVYLDSKEKRQEFYKSLNTFARDLAFSL 786 Query: 938 NFNGFASRLREKGPHWSAEVFNKLPGFIARLE-KLKTDINNLNDAPIFLDIDDEVV---- 992 + + E + L + ++ + D + Sbjct: 787 GCDYVNNIYSESDLSNFKKWLRFYNTLRKSLRIRYAESVDFAQYEQRMQSLLDTYIGTEG 846 Query: 993 ------------------SVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRD 1034 V++L D + A + PA +R + Sbjct: 847 EVFQLSATVDMFSQDFKNEVENLTSDRARADAIISATTKYAKEKREVNPA---FYDRIAE 903 Query: 1035 LTRKGLVELQEWF--DRQHFEESSLRKAWKETRNEDIAARLIGHIR---RAAVGDALKPF 1089 ++ + + +E +R+ E+ + NE I A I + + D+LK + Sbjct: 904 KIKEIIQQYKEKRLSEREFLTEAQGVYVKVKQNNEAILASYPSQISSKPKQSFYDSLKSY 963 Query: 1090 EER------------VDHALTRIKGENDW--SSEQLSWLDRLAQALKEKVVLDDDVFKT 1134 E +D + + +W + + + +++ ++ Sbjct: 964 FETSSEDRFIQIVCYIDEVFAKYIKKPNWKNNIDVKNEIEQELDDYLFDENIEVAELDK 1022 >UniRef50_Q48QA1 Type I restriction-modification system restriction subunit n=27 Tax=Bacteria RepID=Q48QA1_PSE14 Length = 1005 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 130/911 (14%), Positives = 272/911 (29%), Gaps = 87/911 (9%) Query: 155 EQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAEL 214 EQ + + +++ +G + + A A Sbjct: 7 EQALEASIEKYLTGNCLEEQATIRDGVKELPFDPNHGYQLGRVQDFNARYAVDTRCLWRF 66 Query: 215 AKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGA--- 271 ++ + K+ D R L + ++ L K G D L A Sbjct: 67 LHDSQGDELERLKQRYDDWDLRILERFDRLAKKYGVLHLFKRGLAIDDVHLNLMYPAPLA 126 Query: 272 ------RPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLN 325 + + N + + D VLFV P+A +E K AR + Sbjct: 127 SSSGRVKRQFAANIFSSTRQVRYSLSNPLEEIDLVLFVNGLPVATLELKNPWTGQTARYH 186 Query: 326 ESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREY 385 +Y + D+ + LL+ + +G F +PF N Sbjct: 187 GQKQYRQGRDSS---QPLLQFGRCLVHMTVDTDEVYMTTKLAGTATFFLPFNKGHNYGAG 243 Query: 386 RATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGL 445 + + + + E + ++ + + Sbjct: 244 NPPNLA--------GHKSAYLWREI---FSRESVANIIQHFVRLDGSSKTPLAKRTLFFP 292 Query: 446 RYYQEDAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLIQSQR---------- 493 RY+Q D VR + + Q L+ + G+GK+ + ++LI++ Sbjct: 293 RYHQLDVVRRLVAHASQQGVGQRYLIQHSAGSGKSNSITWAAYQLIETYPASLNVAGARG 352 Query: 494 -----FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVAT 548 F ++ + DRR L +Q + + L E KI + T Sbjct: 353 LDVPLFDSVIVVTDRRLLDKQLRENLREFSEVKNIIAPALKSSDLKQAL-EQGKKIIITT 411 Query: 549 VQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILD 608 +Q D+ + +++DEAH T + D +IL Sbjct: 412 IQKFPWIVDGIDD--MAGKRFAVIIDEAHSSQDGSSHGTMNSVMGGDDQD--DTQEKILS 467 Query: 609 -------HFDAVKIALTATPALHTVQIFGE--------PVYRYTYRTAVIDGFLIDQDPP 653 +A A TATP T++ FGE P + Y+ + A+ +GF++D Sbjct: 468 AIKNSKMRGNASYFAFTATPKNSTLEKFGEQQADGRFEPFHLYSMKQAIEEGFILDVLAN 527 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCN 713 + + +++ Q ++ D Q +V + Sbjct: 528 YTTYRSYYEIQKSIEDDPLFDKLKAQKKLRAYVERDQQTIDVK-------AEVMLDHFID 580 Query: 714 ELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT--------G 765 ++ G K +V A + + + + Sbjct: 581 QVVTPKKLKGQGKGMVITQNIESAIRYHKAISRLLAARGNPFKALIAFSGDKLVDGIEYS 640 Query: 766 DADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 +A + +F+ + ++V + TG D P +C + +K++ +L Q Sbjct: 641 EAGINGSAEADTRDKFDTDEY-RLLVVANKYLTGFDQPKLCAMYVDKKLQY-VLAVQALS 698 Query: 826 RATRLCPEVNK--TSFKIFDCVDIYST----LESVDTMRPVVVRPKVE-LQTLVNEITDS 878 R R P+ K + D ++ + T + + L L +++ + Sbjct: 699 RLNRAAPKWGKKTEDLFVLDFFNLVEDIKASFDPFYTATSLSRATDINVLHELKDQLDEL 758 Query: 879 ETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVN 938 Y+ E + A++ +L +I +A + ++ + + ++ Sbjct: 759 GVYEWPEVEAF-AAQYFDNVDAEQLAVLIDIAVERFEVELELEDEAKVDFKIKAKQFVKI 817 Query: 939 FNGFASRLREKGPHWSA--EVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKS 996 + AS + + W L + +K +I+ L ++ E V + Sbjct: 818 YGQMASIMPYEIVAWEKLFWFLKFLIPKLKVQDKDADEIDALLNSVDLSSYGLERVKLNH 877 Query: 997 LYGDYDTPQDF 1007 D + Sbjct: 878 SIALDDADTEL 888 >UniRef50_A0Q726 Type I restriction-modification system, subunit R (Restriction) n=25 Tax=Proteobacteria RepID=A0Q726_FRATN Length = 782 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 164/849 (19%), Positives = 295/849 (34%), Gaps = 147/849 (17%) Query: 238 LNLSEEESR-FLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 ++ SE +++ LI +L+ +GW + T + G + F Sbjct: 1 MSYSEADTKAKLITPKLKNSGWDERNITREYY-----------FTDGRKQAGGARGEKKF 49 Query: 297 ADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 DY+L +A+VEAK+ I+ L ++ Y+K Sbjct: 50 VDYLLHYQGINLAIVEAKKEGINYKQGLQQAIDYAKAL---------------------- 87 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 + + YSTNG + + S+ + ++ P Sbjct: 88 ----------------NVDYVYSTNGHNIL------------EYHISTGQSQDIDDFPTP 119 Query: 417 EELLEMLGSEPQKQNQWFADNPGMSE--LGLRYYQEDAVRAVEKAIVKGQQEILLAMATG 474 EL E K Q S+ RYYQ+ AV+ AI GQ ILL +ATG Sbjct: 120 RELFERKYPNINKVRQNVVTQEFFSDGTKTPRYYQKIAVQKTIDAISSGQDRILLTLATG 179 Query: 475 TGKTRTAIAMMFRLIQSQRFK--------RILFLVDRRSLGEQALGAFEDTRINGDTFNS 526 TGKT A + +RL++++ K RIL+L DR L +QA+ F + Sbjct: 180 TGKTYIAFQIAYRLLEARWRKNDIGNKKPRILYLADRNILIDQAINEFNPIENDCKRIQG 239 Query: 527 IFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS--------------DEPMPVARYDCIV 572 + S + A Q++ + + + P +D I+ Sbjct: 240 --KLIKKNGGKVPLSGNVFFAIYQAVAENKNRQYLATDSEDDSLTAYYKQYPADFFDLII 297 Query: 573 VDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPAL----HTVQ 627 +DE HRG D S++R I+++F AV + LTATP T Sbjct: 298 IDECHRGSANDD----------------SSWRDIIEYFSSAVHLGLTATPKRDVNGDTYD 341 Query: 628 IFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTL 687 FGEP+Y Y+ + + DGFL ++ P D Sbjct: 342 YFGEPIYEYSLKDGINDGFLTPYKVKRITTN--------------IDEYRPNTHDSVDGD 387 Query: 688 EDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAA 747 ++ + ++D+ + + + + + + ++ KT+VFC HA + + Sbjct: 388 LPNKVYSISDWEKTITSQQRHELIAKTILDNINKMD--KTIVFCKNQPHALELKLAIDRF 445 Query: 748 FKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICN 807 K K P +++T + + R N + +P I+ + +LTTGVD ++ N Sbjct: 446 KKVKTPDY----CVRVTSEEGQIGRDYLEQFQD-NDKDIPVILTSSKMLTTGVDAKNVRN 500 Query: 808 IVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVE 867 IV + S I ++Q+ GR TR K F I D V D V V+ Sbjct: 501 IVLTAPIESMIEFKQIIGRGTRTFE--GKDFFTILDFVKASDKFYDKDWDGVADVVTDVK 558 Query: 868 LQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQV-RR 926 + +T +I E D + ++ I + + V Sbjct: 559 ----ADGKPKEDTKEIKEIDPIENLKEKDDEPKKHEPINITIKGRKLKVLDIETSYVGVD 614 Query: 927 LDELCQDAAGVNFNGFASRLREKGPHWSAEVF---NKLPGFIARLEKLKTDINNLNDAPI 983 + G + + + + + +LE++ + N+++ Sbjct: 615 GRPIATQEYLEQLIGVLGKYCQNNEQALKDAWANPKHRQTLLDKLEEMLSFGQNIDNIKA 674 Query: 984 FLDIDDEVVSVKSLYGDYDTP------QDFLEAFDSLVQRSPNAQPALQAVINRPRDLTR 1037 D + + + + +Q+ NA A + ++ + Sbjct: 675 IFKAKDSDIYDVLNHLVFSKDIITREQRAVAAESSEFIQQLQNA-KAREFLLFVLDKYKK 733 Query: 1038 KGLVELQEW 1046 G+VEL++ Sbjct: 734 DGVVELEQK 742 >UniRef50_C4XDR7 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XDR7_MYCFE Length = 808 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 186/857 (21%), Positives = 328/857 (38%), Gaps = 136/857 (15%) Query: 225 YHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEW 284 Y E+ K T+N E + R I L +AGW + + + A + Sbjct: 7 YLNEVIKMNKKNTINEEEVKLR-FITPALERAGWDKNFINMEYYISA--------GKVIF 57 Query: 285 PTGKDETGNQGFADYVLFVGL--KPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRET 342 G+ + DY+L P+A++EAK + L ++ Y+K Sbjct: 58 ENGEAKKLKAKRIDYLLNYNGDGSPLAIIEAKGEDHKEGDGLLQAQNYAKRL-------- 109 Query: 343 LLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRD 402 + F +++NG +R + D++ Sbjct: 110 ------------------------------GVRFVFTSNGNNFR----------FYDMKT 129 Query: 403 TRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP------GMSELGLRYYQEDAVRAV 456 + L E+ P+EL EM E K+N+ G + RYYQ+ A+ Sbjct: 130 GIEKTIGLDEFFTPDELFEMTYGEEIKENKALEKIISTPYYYGQNSHIPRYYQKRAINDT 189 Query: 457 EKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFED 516 A+ KG+ ILL MATGTGKT A +++RL +S K+IL+L DR L +Q + D Sbjct: 190 VDAVAKGKDRILLVMATGTGKTYVAFQIIWRLWKSGLKKKILYLADRNILIDQTI--IGD 247 Query: 517 TRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKR-----TLQSDEPMPVARYDCI 571 + ++ + + + + S +I+++ Q L + + E +D I Sbjct: 248 FKPFKNSMVKV------SKRNMDTSYEIYLSLYQQLSENGSEDSLKKLKESFKPDFFDLI 301 Query: 572 VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALH----TV 626 +VDE HRG + S +R IL++FD A KI LTATP + Sbjct: 302 IVDECHRGSASED----------------SKWREILNYFDSATKIGLTATPKETAEVSNI 345 Query: 627 QIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDT 686 FGEP+Y Y+ + + DG+L + G+ R Sbjct: 346 DYFGEPIYTYSLKEGIEDGYLAPYKV--------VKFGINTDVFGY--RPEKDKRDKYGE 395 Query: 687 LEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ--KTLVFCVTNAHADMVVEEL 744 + +D ++ V DF++ +VI + V ++T+YL ++ KT+VFC HA+ + + L Sbjct: 396 IVEDNEYNVKDFDKTIVIEERTKEVAKKITDYLKSINNRYAKTIVFCDDIEHAERMRQAL 455 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPS 804 + +H I++ITGD ++ +++ I E P IV T +L+TTGV+ Sbjct: 456 V-HYNSDMMAKDHRYIVRITGDNEEGKKQLDNFIDD--NELYPTIVTTSELMTTGVNCKL 512 Query: 805 ICNIVFLRKV---RSRILYEQMKGRATRL-------CPEVNKTSFKIFDCVDIYSTLESV 854 I ++Q+ GR TR+ NK F I D + Sbjct: 513 CRVIALD-NTFGENGMTKFKQIIGRGTRIKEFDDPKDKHKNKLYFTILDFKNATKLFADP 571 Query: 855 DTMRPVVVRPKVELQTLVNEITDSETYKITEA--DGRSFAEHSHEQLVAKLQRIIGL--- 909 D P + + L N+ ET K E +G + E+S + + ++I Sbjct: 572 DFNGPAIQEEFFNPEILRNKKAKQETKKEYELVDEGLVWKENSEQNKSNRRKKIYVNGVD 631 Query: 910 ATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLE 969 + D + + + E +D N + +++ +W++ I L Sbjct: 632 VELIYKKVNYYDDEGKLIIEPIEDFVKRNVLKNYNTIQDFVKYWTSN--KTRSTIIQELM 689 Query: 970 KLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSL-VQRSPNAQP---AL 1025 I NL + D +++ + + + + + N + L Sbjct: 690 SKGILIENLRNIYPRDFDDFDLICSIAYGSKLLKRSERVNNKKVVQIIERQNVETCRKIL 749 Query: 1026 QAVINRPRDLTRKGLVE 1042 Q +IN+ ++ L + Sbjct: 750 QILINKYQEEVIDELTD 766 >UniRef50_B8GAW6 Type I site-specific deoxyribonuclease, HsdR family n=4 Tax=Bacteria RepID=B8GAW6_CHLAD Length = 982 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 136/856 (15%), Positives = 246/856 (28%), Gaps = 108/856 (12%) Query: 259 QADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNI 318 + + L RPE E+ + AD V V P+ V+E K Sbjct: 100 ERRERNLALLDPERPEANRFHVTDEF--TFQSGARRIRADVVFLVNGIPVIVIETKAATR 157 Query: 319 --DVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPF 376 + ++ RY + + + L + S K F Sbjct: 158 LEGIAEAFDQIRRYHQEAPDLMAQAQLFALTHLVQFFYGAT------WSLSRKALFNWRE 211 Query: 377 CYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFAD 436 NG + + + P +L +L + Sbjct: 212 EVRANG-----------------GLPPPDFETLVKSFIAPRRVLRVLTDYILFARK---- 250 Query: 437 NPGMSELGLRYYQEDAVRAVEKA------IVKGQQEILLAMATGTGKTRTAIAMMFRLIQ 490 + + ++ LR +Q A V K + L+ G+GKT T + + RLI+ Sbjct: 251 DGELQKIVLRPHQMRATERVLARSYQAVTAPKAPRRGLIWHTQGSGKTYTMLTIARRLIE 310 Query: 491 SQRF--KRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVAT 548 RF +L +VDR L Q E + L + D+ + V+ Sbjct: 311 DGRFDNPTVLLIVDRNELESQLFQNLEAVGF--GRVRLARSKRHLRELLRADTRGLIVSM 368 Query: 549 VQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILD 608 + + R ++VDEAHR D Sbjct: 369 IHKF----DDMPANLCPRRNVFVLVDEAHRSTGGDLGNYLMGALP--------------- 409 Query: 609 HFDAVKIALTATP------ALHTVQIFG-----EPVYRYTYRTAVIDGFLIDQDPPIQII 657 +AV I T TP T ++FG + +Y+ R ++ DG + + Sbjct: 410 --NAVFIGFTGTPIDRTAHGKGTFKVFGADDPQGYLDKYSIRESIEDGATVPLHYQLAPN 467 Query: 658 TRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVA-DFNRGLVIPAFNRAVCNELT 716 A + V + EV D+ + + V + Sbjct: 468 DLIADREAMEREFWAVAELEGVAEVEELNRVLDRAVTLTNKLKNRERVDKIAAFVADHFQ 527 Query: 717 NYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADK------D 770 Y+ P G K + + E L + I D Sbjct: 528 KYVQPMG-YKAFLVAADREACALYKEALDRYLPA---EWSAVVISAGHNDPPHLKRYHLS 583 Query: 771 ARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829 + + F K P + + + L TG D P + + + +R +L Q R R Sbjct: 584 EEEETRLRRAFRKPGENPQMFIVTEKLLTGYDAPILYCMYLDKPMRDHVLL-QAIARVNR 642 Query: 830 LCPEVN---KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEA 886 + KTS I D V ++ LE V VE ++ + + + + Sbjct: 643 PYESDDGQRKTSGLILDFVGVFENLERALAFDSQDVSGVVEGIEVLQQ-RFAALMEQSRQ 701 Query: 887 DGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGF---- 942 + + ++ AK ++ +T + R EL + ++ + F Sbjct: 702 EHLTVGQNLSSPYAAKDDKLAESILLRFRDKDTREAFYRFFRELEELYEILSPDPFLRPY 761 Query: 943 ---ASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDE--------V 991 RL E A +P + L K + + + + Sbjct: 762 LEDYQRLVEMYRLLRAAYEPHVPVDKSFLRKTAEIVQQHSRTDAIHEPQATYEIGPVALL 821 Query: 992 VSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAV---INRPRDLTRKGLVELQEWFD 1048 + + + L+ LV+ +A P L ++ R + +E Q+ Sbjct: 822 ALLTEEKPETVKVFNLLKELHHLVEEQGHAAPYLLSIGERAEEVRRRFEERQIESQQALQ 881 Query: 1049 RQHFEESSLRKAWKET 1064 L +A E Sbjct: 882 ELDELVKQLNQAHAER 897 >UniRef50_UPI0001C37440 type I restriction-modification system, R subunit n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37440 Length = 1068 Score = 367 bits (942), Expect = 1e-99, Method: Composition-based stats. Identities = 174/1080 (16%), Positives = 336/1080 (31%), Gaps = 162/1080 (15%) Query: 144 HQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAAL 203 E+ ++ L Q++ T ++ ++ ++ ++ +A L L Sbjct: 5 PTELQYVETPLLDQLKRLGWTVKQLSDSEK---HDPKNSYRESFREVVIVSRLRAALKRL 61 Query: 204 EAQLAEKNAELA-----------KQTEQERKAYHKEITDQAIKRTLNLSEEESR-FLIDA 251 L + E K + + + IT+ L+ E R LID Sbjct: 62 NPWLEDNQIEDLCNQVQTYPHPMKNLLENNEEVYDMITEGLSADDLHTGELNRRVRLID- 120 Query: 252 QLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVV 311 W + GA AI+++ D VLFV P+ V+ Sbjct: 121 ------WT----DVDGYDGADMTDNEFLAISQYKVRIPGKEEHIIPDIVLFVNGLPLVVI 170 Query: 312 EAKRNNI--DVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGK 369 E K +I + + + RY E VPE Q Sbjct: 171 ECKAPDIAEPMAEGIEQLMRYQNRR--------------GSAELEGVPELFYFNQILIST 216 Query: 370 QRFKIPFCYSTNGREYRATMKTKSGIWYRDVR---DTRNMSKALPEWHRPEELLEMLGSE 426 + T G + K RD+ + P LL+++ + Sbjct: 217 CFHDCRYSSITGGVSHFMEWKDAYPYKLRDINPNGKPSAQEITVAGMLEPSHLLDIVQNF 276 Query: 427 PQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIV---KGQQEILLAMATGTGKTRTAIA 483 ++ DN +L RY Q + + + KG++ L GTGKT T + Sbjct: 277 IAFKD---EDNGIRVKLVPRYMQYRGAAKIIERLRTAAKGEKGGTLWHTQGTGKTLTMMF 333 Query: 484 MMFRLIQSQR--FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDS 541 ++ ++ S +++ +VDR+ L Q F+ T+ N I+GL + Sbjct: 334 VIRKMYNSLDLYNYKVVLIVDRKDLQTQM---FKTTKTVKYAVNIADSIEGLKKLIENTA 390 Query: 542 TKIHVATVQSLVKRTLQSDEP-------------------MPVARYDCIVVDEAHRGYIL 582 + + VA V + S + + + +++DEAHR Sbjct: 391 SDVTVAMVHKFGENEKNSGKKNDKKSATLEQRTAVSSFPVLNTSDRILVMIDEAHRSEYS 450 Query: 583 DKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAV 642 + + ++VK+A T TP TV FG + YT + A Sbjct: 451 ELAANMWKSMP-----------------NSVKVAFTGTPITKTVDNFGGYIDTYTMKQAE 493 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVI-NDTLEDDQDFEVADFNRG 701 DG ++ ++ R A + + + G + + +E + V + Sbjct: 494 EDGIVV----ELKYEGRAADSEITDKEAMNRSFVDVFGYLDVEEQVEILGRYTVRAY--- 546 Query: 702 LVIPAFNRAVCNELTNYLDP---TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHD 758 L + ++ ++ T K V V+ A + + A K +LE + Sbjct: 547 LEAEEIIKEKAADMLDHYISTVFTNGFKAQVVGVSKEAAYRYKQAIDALLPIKIAELEQN 606 Query: 759 --------------AIIKITGDADKDARKVQT---------MITRFNK----------ER 785 I+ + + ++ +I F + Sbjct: 607 NPNRVDIEQLKKLKTACVISAGGSNEEQHLKKYANEKENELIIDGFKAPFGETGLKGGDG 666 Query: 786 LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV 845 I++ +L TG D P + +K+ + L Q RA R C NK + D V Sbjct: 667 NYGILIVTAMLLTGFDAPIEQVMYLDKKLTNHNLL-QAITRANRTC-GANKKCGYLVDYV 724 Query: 846 DIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQR 905 I + L+ R ++ +++L ++ D + + F +++ Sbjct: 725 GITNHLKDALADYADADRDEI-MESLRDKSKDIDALNSAYNEIVQFLTEKVGCSLSQTSE 783 Query: 906 IIGLATFNRDRSETIDKQV----RRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKL 961 II + + E + + R D + D A + ++ +L + N Sbjct: 784 IIEELCIDEELREEYNGRFSVMSRLFDRVLPDPAALKYSEEYKKLAFIRESVAKMTRNPR 843 Query: 962 PGFIARLEKLKTDINNL--------NDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDS 1013 +K++ I P L + + D T ++ A Sbjct: 844 FSNRDASKKVRIIIERYLTVNGVDIEIQPTPLLSPEFLKGANKNKSDRATCEEIKYAVRE 903 Query: 1014 LVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARL 1073 + + P L A ++ L++ + + LRKA ++ R +DI A Sbjct: 904 FININMPKDPELYARLS----------ERLEQILENFKNNWAELRKALEQLR-KDIIAGR 952 Query: 1074 IGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFK 1133 PF + D S +Q+ L + + + + Sbjct: 953 AKENTYGYEATHEMPFLGLLKTEFFGNTPFEDLSDQQMKILKSVTDDVLNRFKTETATVN 1012 >UniRef50_A1HQI3 Type I site-specific deoxyribonuclease, HsdR family n=4 Tax=cellular organisms RepID=A1HQI3_9FIRM Length = 1050 Score = 366 bits (940), Expect = 2e-99, Method: Composition-based stats. Identities = 143/1024 (13%), Positives = 308/1024 (30%), Gaps = 156/1024 (15%) Query: 203 LEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLID---AQLRKAGWQ 259 L L + N L +E A + + D++ + + + + L D + A + Sbjct: 53 LRNALEKLNPGL--DSEAINLAIEEIVKDRSSLNPVQANRDVYKLLKDGVKVTYKNADDE 110 Query: 260 ADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNID 319 + ++ PE N + + AD V FV P+ +E K Sbjct: 111 EIDEVVKVIDWNCPEN--NHFLLASQLWISGEIYKRRADLVGFVNGIPLVFIELKSTARR 168 Query: 320 VPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYS 379 + Y + L Y+ F Sbjct: 169 LEHA------YYDNLRDYKNTIPQLFWYNG--------------------------FIIL 196 Query: 380 TNGREYRATMKTKSGIWYRDVRDTRN--------MSKALPEWHRPEELLEMLGSEPQKQN 431 +NG + R + S + + + + + LL+++ + + Sbjct: 197 SNGSQSRIGSMSASWEHFAEWKKVSSEGEEGVVSLETMFRGTCDKVRLLDIVENFTLFSD 256 Query: 432 QWFADNPGMSELGLRYYQE----DAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFR 487 + +L + +Q +A+ AV+K + + G+GK+ + + + Sbjct: 257 A----GGSLVKLVAKNHQYLGVNNAIEAVKKIRENKGRLGVFWHTQGSGKSYSMLFFCQK 312 Query: 488 LIQSQRFK-RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHV 546 +++ + + DR L +Q F + + L + ED ++ Sbjct: 313 ILRKIPGNWTFVIVTDRTELDDQIYKNFAAAGAVIEERVQAESCQHLKELLAEDH-RMVF 371 Query: 547 ATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRI 606 + + ++VDEAHR + R Sbjct: 372 TLIHKFQSDNDGEYPKITDRDDIIVLVDEAHRSQY---------------DTLAANMRSA 416 Query: 607 LDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ 662 + +A IA T TP T ++FG+ V Y +R ++ D + +I Sbjct: 417 MP--NASFIAFTGTPLMAGEEKTREVFGDYVSIYNFRQSIEDRATVPLYYENRIPELQLI 474 Query: 663 EGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT 722 + + +++ E + E A + + ++ + Sbjct: 475 NEKLNDDIQDI----IDNAALSEEEEKKLEREFAREYHLITRDDRLETIAEDIVKHFMTR 530 Query: 723 GS-QKTLVFCVTNAHADMVVEELRAAFKKKYPQL-----------------------EHD 758 G K +V + A + ++++ ++K +L E D Sbjct: 531 GEMGKAMVVSIDRFTAVRMYDKVQKYWQKYMDELQKQLAKCHPEEAAEIKKKLDYMQETD 590 Query: 759 AIIKITGDADK------------DARKV---QTMITRFNKERLP-NIVVTVDLLTTGVDI 802 + I+ ++ RK + + RF P IV + TG D Sbjct: 591 MAVVISSGQNEVEAFQKKGLDILPHRKRMVTEDLDKRFKDPNDPLRIVFVCAMWLTGFDA 650 Query: 803 PSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVV 862 P++ I + +++ L Q RA R+ +KT I D + ++ L+ + V Sbjct: 651 PAVNTIYLDKPMKNHTLM-QTIARANRVF--KDKTCGTIVDYIGVFRNLQKALAIYATPV 707 Query: 863 RPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDK 922 ++ + D T + + + R++ + R Sbjct: 708 AGG----SVDTPVKDKTTLIDELKKAIAATTAFCNEKGIDVGRLLNTSGLELVRLLDDAV 763 Query: 923 QVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAP 982 + +++ + + P A F K A + + D Sbjct: 764 ERLVVNDETKQRFQSLVGNIVKLYKAILPDPKASEFAKQKNLFACISDKIRSLTPPADIS 823 Query: 983 IFLDIDDEVVS---VKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKG 1039 + +EV+ Y ++ P + ++ V S AL+ ++ + T Sbjct: 824 DIMGEIEEVLDQSIASEGYIIHEAPAGY----NTKVDLSQIDFEALRKFFDKSKKHTEVE 879 Query: 1040 LVELQEWFDRQHFEESSLRKAWKETRNE-DIAARLIGHIRRAAVGDALKPFEERVDHALT 1098 + + L K + ++ D A R I G V+ Sbjct: 880 --------KLKGLINAKLNKLVRLNKSRIDFAERFQKLIDEYNSGSL------NVELMFD 925 Query: 1099 RIKG-ENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFH-RRGGKAMLQRTFDDNLDT 1156 ++ + + E+ L A+ L E+ + D+ KA +++ + LDT Sbjct: 926 KLLAFAKELTEEEKRGL---AEQLTEEELALFDILTKPEPKLTDKDKAQVKKVVRELLDT 982 Query: 1157 LLGK 1160 L + Sbjct: 983 LKRE 986 >UniRef50_A6L6I5 Type I restriction enzyme EcoR124II R protein n=7 Tax=Bacteroides RepID=A6L6I5_BACV8 Length = 942 Score = 366 bits (939), Expect = 3e-99, Method: Composition-based stats. Identities = 141/1002 (14%), Positives = 295/1002 (29%), Gaps = 122/1002 (12%) Query: 173 QKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQ 232 Q AL + + Q + K+ E+ E T + Sbjct: 4 QSEAALEAGLITTLQQMDYEYVQIVEEDNLYANFKRQLEVHNRKRLEEY---GRNEFTTE 60 Query: 233 AIKRTLNLSEEESRFLIDAQLRKA--GWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDE 290 ++ L E +RF +LR AD + + R + N+ E Sbjct: 61 EFEKILIYLEGGTRFEKAKKLRDLYPLDTADGQRIWVEFLNRQQWCQNEFQVSNQIT-VE 119 Query: 291 TGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPD 350 + D + + P+ +E KR +++ N+ RY K +G L S Sbjct: 120 GRKKCRYDMTILINGLPLVQIELKRRGVELKQAYNQIQRYHKTSFHGLFDYIQLFVISNG 179 Query: 351 EVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKAL 410 +G ++ + + ++ Sbjct: 180 VNTRYFANNP-------------------NSGYKFTFNWTDAANHPFNELDKFAVF---- 216 Query: 411 PEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 + L +++G + LR YQ AV + + + Sbjct: 217 --FLEKCTLGKIIGKYI------VLHEGDKCLMVLRPYQFYAVEKILDRVQNSNDNGYIW 268 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDI 530 TG GKT T+ + + +++F+VDR L Q +E +S + Sbjct: 269 HTTGAGKTLTSFKAAQLVSELDDVDKVMFVVDRHDLDTQTQSEYEAFEP--GAVDSTDNT 326 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVA----RYDCIVVDEAHRGYILDKEQ 586 L + +S KI + T+Q L ++ + ++ DE HR + D Sbjct: 327 DELVKRLQSNS-KIIITTIQKLNAAVSKTWYSNKIDAIRHSRIVMIFDECHRSHFGDSH- 384 Query: 587 TEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATP--------ALHTVQIFGEPVYRYT 637 ++I+ F +A T TP T +IFG +++Y Sbjct: 385 -----------------KKIMKFFDNAQIFGFTGTPIFTENAVDGHTTKEIFGNCLHKYL 427 Query: 638 YRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVAD 697 + A+ D ++ E I E D F V Sbjct: 428 IKDAIADENVLGFLVEYYHGNEIVDNDNQTRMEEIARFILNNFNKSTFDGEFDALFAVQS 487 Query: 698 FNRGL--------VIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFK 749 + + P Q + + + +EL++ Sbjct: 488 VPMLIRYYKIFKSLNPKIRIGAVFTYAANNSQDDEQTGMGTGKYVSESVGEADELQSIMD 547 Query: 750 KKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNI 808 T + + + + + P ++ + V + TG D + + Sbjct: 548 DYNENYGTSFT---TENFRAYYDDINLRMKKKKADMKPLDLCLVVGMFLTGFDSKKLNTL 604 Query: 809 VFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVEL 868 + + L Q R R+ E K KI D+ + +++ + P+ + Sbjct: 605 YVDKNMEYHGLL-QAFSRTNRVLNEK-KRFGKIVCFRDLKNNVDTSIKLFSNSDNPEDIV 662 Query: 869 QTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLD 928 + ++ T+ + S + L ++ + + F + + Q+ Sbjct: 663 RPPFEKVKHEYKGLATDFLQKYPTPSSIDLLQSENDKKNFVLAFRDIIRKHAEIQIYEDY 722 Query: 929 ELCQDAAGVN---FNGFASRLREKGPHWSAEVFNKLPGFIAR--------LEKLKTDINN 977 + G+ FN + S+ + + + LE + + Sbjct: 723 SEDAEDLGMTEQQFNDYKSKYLDITVGFIDPPATQSTVAEDPVPYGNSQGLEDIDFCLEL 782 Query: 978 LNDAPIFLDIDDEVVSVKSLYGDY--DTPQDFLE-------------AFDSLVQRSPNAQ 1022 L+ I + E+++ Y D + + L+ D +Q++ + Sbjct: 783 LHSDIINVAYILELIAELDPYSDDYSEKRKHILDTMIKDAGMRGKAKLIDGFIQKNVDED 842 Query: 1023 PALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIG-HIRRAA 1081 D T EL+E ++ E + + +E I+A ++ +I+ Sbjct: 843 KENFMNGRNRADGT----NELEERLNQYIVSERN-KAVSDLADDEQISAEVLNLYIKEYD 897 Query: 1082 VGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKE 1123 +P E + AL ++ + L R+ + L+ Sbjct: 898 YLQKEQP--EIIQKALKE---KHLGLIKTRKALTRIMERLRS 934 >UniRef50_B7MMN7 Type I restriction-modification system (HsdR-like) n=25 Tax=Bacteria RepID=B7MMN7_ECO45 Length = 1091 Score = 366 bits (938), Expect = 4e-99, Method: Composition-based stats. Identities = 151/1057 (14%), Positives = 299/1057 (28%), Gaps = 111/1057 (10%) Query: 138 RGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQ 197 E Q ++ L Q Q Q L Y+A TE + Q Sbjct: 9 FSEAKLEQAIIELLQDQGYQHLIGDNVPRSTLDQVIIEDDLRHYLAARYQPDGITEEEIQ 68 Query: 198 ARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRK-- 255 + A E K + D K+ L + ++R L A LR+ Sbjct: 69 RLIKQFTTLPASDLYESNKTFCRWLANGFLFKRDDRQKKDLYIELLDTRHL-PAALRQIF 127 Query: 256 AGWQADSKTLRFSKGARPEPGVNKAIAEWPTGK-DETGNQGFADYVLFVGLKPIAVVEAK 314 + + P +N+ + D +L++ P+ V E K Sbjct: 128 DAEDVPLQQAAELPPSYINPPLNRIKIVNQLKISGKDNQTRIPDGILYINGLPLVVFEFK 187 Query: 315 RN----NIDVPARLNES-YRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGK 369 ++ + RY + F+ L Sbjct: 188 SAVREQEANIGDAWKQLCKRYRRDIPQLFIYNALCIISDGVNNRMGNLFAP--------- 238 Query: 370 QRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQK 429 EY + + +G R+ ++ + P LL+++ + Sbjct: 239 -------------YEYFYSWRKVTGNENREQDGIPSLHSMIQGLFHPVRLLDVIKNFICF 285 Query: 430 QNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQ------EILLAMATGTGKTRTAIA 483 ++ ++ RY Q A R + +I + ++ ATG GK+ T Sbjct: 286 PDK----AKHEVKICCRYPQYYAARKLYYSIKQARKPFGSGKGGTYFGATGCGKSYTMQF 341 Query: 484 MMFRLIQSQRF--KRILFLVDRRSLGEQALGAF--EDTRINGDTFNSIFDIKGLTDKFP- 538 + L++S F I+ + DR L +Q I DT + + L ++ Sbjct: 342 LTRLLMKSVEFASPTIVLITDRTDLDDQLSAQMCNAKNYIGDDTIVPVTSREDLRNQLAG 401 Query: 539 EDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLD 598 +S + + T+ + E + + DEAHR + ++ + + Sbjct: 402 RNSGGVFLTTIHKFT----EDTELLSERSNIICISDEAHRSQVNLDQKVIVDKESGKVRK 457 Query: 599 YVSAYRRILDHF-DAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQII 657 + + D +A + T TP T+ +FGE + YT +V D + + Sbjct: 458 TYGFAKYLHDSLPNATYVGFTGTPIDATLDVFGEVIDSYTMTESVQDEITVRIVYEGRAA 517 Query: 658 TRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTN 717 + E + G N+ D+ A N L +A+ + Sbjct: 518 KVILDSSKLEEVEKYYEECANAG--TNEWQIDESKKATATMNAVLGDEDRLKALAEDFAK 575 Query: 718 YLDPTG------SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKIT------- 764 + + K + C + A +L+ + + + +T Sbjct: 576 HYEKRVAEGSTVKGKAMFVCASREIAWDFYRQLKVIRPAWFEVKQAPDGVVLTEQEQKEL 635 Query: 765 ------------GDADKD--------ARKVQTMITRFNKER-LPNIVVTVDLLTTGVDIP 803 G D + + + +F + I + VD+ TG D+P Sbjct: 636 PPSEMVKMVMTRGKDDDEALYDLLGTKEYRKELDKQFKNAKSNFKIAIVVDMWLTGFDVP 695 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVR 863 + I + ++ L Q R R K+ + D + I S + M + Sbjct: 696 ELDTIYIDKPLQKHNL-IQTISRVNRKLE--GKSKGLVVDYIGIKSQMNQALAMYSRIDA 752 Query: 864 PKVELQT----LVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSET 919 E V D E D R + + ++ L R + Sbjct: 753 TNFEDIQQSVIEVKNHLDLLGQVFYEFDSRDYFSGEPQAQLSCLNRAAEFVLRTQKVERR 812 Query: 920 IDKQVRRLDELCQ-----DAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTD 974 V+R+ +A P +++ Sbjct: 813 FMGLVKRMKAAYDVCCGSEALSQTERDHIHYYLAVRSIVFKLTKGDAPDVTQMNARVREM 872 Query: 975 INNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRD 1034 I A V+ +Y D + ++ FD N I + Sbjct: 873 IAEALKAD----------GVEEIYFLGDKKAESIDIFDEDYLARINKIKLPATKIQLLQK 922 Query: 1035 LTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVD 1094 L K + + ++ Q + +A + NE ++ + + Sbjct: 923 LLEKAISDFKKVNQLQGINFTRRFQAIIDRYNERREDDVLNGEEFDTFSQEMTDIIYDIK 982 Query: 1095 HALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDV 1131 + E+ ++ D + +++K D Sbjct: 983 TEMGTWADL-GIDIEEKAFFD-ILAHMRDKYQFTYDD 1017 >UniRef50_UPI000185CC48 type I restriction-modification system, R subunit n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185CC48 Length = 1068 Score = 366 bits (938), Expect = 4e-99, Method: Composition-based stats. Identities = 143/968 (14%), Positives = 281/968 (29%), Gaps = 125/968 (12%) Query: 219 EQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVN 278 ++ R +Q + L L + + + G S + R+ PE V Sbjct: 79 KELRTHEGFMGVNQQVYDLLTLGKTFEQTI--------GSSKKSYSFRYIDWECPENNVY 130 Query: 279 KAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN--NIDVPARLNESYRYSKC--F 334 E+ + + D VLF+ PI V+E K N + +++ R K Sbjct: 131 HVSEEFAVTRTARNDHYRPDIVLFINGIPIVVIECKSNVIKNPITEAISQHLRNQKDDGI 190 Query: 335 DNGFLRETLLEHYSPDEVHEAVPEYETSW------------------QDTSGKQRFKIPF 376 + LL + + A + Q + +P Sbjct: 191 RELYQYSQLLLALAVNSASYATTATPLKYWQVWCELFGDRLAENKANQQLKSLKNRPLPV 250 Query: 377 CYSTNGREYRATMKTKSGIWYRDVRDT----RNMSKALPEWHRPEELLEMLGSEPQKQNQ 432 + +R + ++R L R E LL ++ N Sbjct: 251 DEQSALFAHRYQ---STQYFFRQQATEEVLLTEQDLTLYYLCRKERLLRLIQHYTIFDNH 307 Query: 433 WFADNPGMSELGLRYYQEDAVRAVE---KAIVKGQQ-EILLAMATGTGKTRTAIAMMFRL 488 + RY Q AV K I G++ ++ G+GK+ T + + L Sbjct: 308 --------IKKIARYQQFFAVEDTLAKVKHIEDGKRLGGVIWHTQGSGKSLTMVMLAQLL 359 Query: 489 IQSQRFK--RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHV 546 + K +IL + DR L EQ F+ + LT+ E + K+ Sbjct: 360 AADKSIKHPKILLVTDRTDLDEQISKTFKKCNL---PVEKAATGTKLTELLKEHTDKVIT 416 Query: 547 ATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRI 606 T+ Q ++ + + +++DEAHR ++ Sbjct: 417 TTIHKFETVVSQLNKALTSSE-IFVLIDEAHRTQYGRLGVKMQQVFP------------- 462 Query: 607 LDHFDAVKIALTATP----ALHTVQIFGEPVYR-YTYRTAVIDGFLIDQDPPIQIITRNA 661 A IA T TP +T FG + YT AV DG ++ + + Sbjct: 463 ----KACFIAFTGTPLMKKEKNTAAKFGGIIGTPYTITDAVADGAIVPILYEGRHNLFDL 518 Query: 662 QEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL-VIPAFNRAVCNELTNYLD 720 E + ++V + + + +A NR +I A + + Sbjct: 519 NEKPLDNYFDRVSEPLSDYGKAHLKRKAN---SIAQLNRADQIIQARAWDIAEHFKKNVQ 575 Query: 721 PTGSQKTLVFCVTNAHADMVVEEL--------------------RAAFKKKYPQLEHDAI 760 G K ++ + A L ++ Sbjct: 576 NEG-FKAMLVTPSKTAAIDYRNYLMKECKLDCEVLISAPDTRENNEDSFEENEYKVGSFY 634 Query: 761 IKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 + + ++I F + P +++ VD L TG D P + + R ++ L Sbjct: 635 KAMMDKYGSSKKYEDSLIDSFRDKEQPELLIVVDKLLTGFDAPIVKVMYLTRSLKEHTLL 694 Query: 821 EQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSET 880 Q R R+ + K + D L+ M + + E Sbjct: 695 -QAIARVNRV--KEGKDYGLVIDYYGNLENLDKAIEMYGSWEDFEADDLKGTVTNAAKEI 751 Query: 881 YKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFN 940 K+ + + + + + + +E + + +R + + Sbjct: 752 EKLPQLHSQLW----------DIFKTVKNKYDTEAYAELLSDKEKRETFYERLSLFARML 801 Query: 941 GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLY-- 998 A L +A + + L+TD+ I ++ + Sbjct: 802 KLALSLVSFDTEENAPTIERYQKDLKFFLALRTDVARRYFDTIDYTEYEKQIQKLIDKHI 861 Query: 999 ---GDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEES 1055 GD+ + ++ FD + A L ++ + + + + D Sbjct: 862 ITDGDFLQITEKIDLFDK--EERDKALEQLTGHASKADHIASRTVKAISIKMDEDPIFYQ 919 Query: 1056 SLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLD 1115 L ++T R+ V D F E L + + ++ + Sbjct: 920 KLSTLIRQTIEAYRQKRIDELEYFNRVRDYENQFFEGTQSNLPEALIG---NKKATAFYN 976 Query: 1116 RLAQALKE 1123 L + LK Sbjct: 977 LLGEHLKT 984 >UniRef50_A4VG54 Type I restriction-modification system endonuclease n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VG54_PSEU5 Length = 1019 Score = 366 bits (938), Expect = 4e-99, Method: Composition-based stats. Identities = 129/804 (16%), Positives = 246/804 (30%), Gaps = 90/804 (11%) Query: 268 SKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN-NIDVPARLNE 326 + AR + + + D+ D F+ P+A VE K + V A + + Sbjct: 74 TVIARYAANRLRVVPQLRYSLDKADE---IDLAFFINGIPVATVELKTDFTQSVQAAMQQ 130 Query: 327 SYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQD-TSGKQRFKIPFCYSTNGREY 385 + E LL VH A+ + + +G F +PF +G Sbjct: 131 YRMDRRPERKSGGLEPLLTFKRGAVVHFAMSDSDIRMTTKLAGDSTFFLPFNRGNDGAAG 190 Query: 386 RATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGL 445 + L +HR +L + QN + Sbjct: 191 NPPGENGHYPVSYLWERVLQKDNWLHIFHRF-----VLQERKETQNAEGKTYFKEGLIFP 245 Query: 446 RYYQEDAVRAVEKAIV-KG-QQEILLAMATGTGKTRTAIAMMFRLIQSQRFK------RI 497 R++Q + V + A+ +G Q L+ + G+GKT T LI+ +R + Sbjct: 246 RFHQWEGVTKMIDAVRVEGAGQPYLIQHSAGSGKTNTIAWTAHSLIRVRRPDGEPYFHSV 305 Query: 498 LFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE------DSTKIHVATVQS 551 + + DR+ L +Q A + +I + K + D I V T+Q+ Sbjct: 306 IVVTDRQVLDQQLQDAIQQIEHQAGVVCAIDRQQSSLPKSQQLAKAMLDGVPIIVCTLQT 365 Query: 552 LVKRTLQSD-EPMPVARYDCIVVDEAHRGYILDKE---------QTEGELQFRSQLDYVS 601 E R I++DEAH Q+E E + S+ + +S Sbjct: 366 FPYAQKAILGEQSLRNRRFAIIIDEAHSSTGGSTADDLRYVLTGQSEAEWEKLSKEERLS 425 Query: 602 AYRRILDHF-DAVKIALTATPALHTVQIFGEP---------------VYRYTYRTAVIDG 645 ++ +A A TATP T+ +FG P + YT + A+ +G Sbjct: 426 VWQSSRSRPGNASYFAFTATPKHSTLSLFGRPRNPTQPVSTDNPPAPFHLYTMQQAIDEG 485 Query: 646 FLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIP 705 F++D + G + ++V+ S ++ + + + Sbjct: 486 FILDVLKNYTSYEVAFKIGSEMVDDKRVDEKSAGRKLAKWLSLNP-----------VNVG 534 Query: 706 AFNRAVCNELTNYLDP--TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI 763 + + G K +V + A A L K+K A++ Sbjct: 535 QKVELIVEHFRKNVAHLLGGQAKAMVVTSSRAAAVKYHLALEDYCKRKGYD-NVLAMVAF 593 Query: 764 TGDADKDARKV--------------------QTMITRFNKERLPNIVVTVDLLTTGVDIP 803 +G+ + + M F+ +++ + TG D P Sbjct: 594 SGEVPNTDVQAPSLPADHQFSETNLNPGLHGRDMRKVFDAPDY-RVMIVANKYQTGFDQP 652 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTL--ESVDTMRPVV 861 + + +K+ S + Q R R P +KT + D + + R Sbjct: 653 KLVAMYLDKKI-SGVEAVQTLSRLNRTFPGKDKTF--VIDFANKAEEILASFKTFYRDAQ 709 Query: 862 VRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETID 921 V + + + + I E + Q++ L DR Sbjct: 710 VADIQDPNIVYDIKQRLDGMFIYEQAEVEAFGDAIVDPKVTHQKLFSLTQAPTDRFNGKL 769 Query: 922 KQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDA 981 K + + + A + + E +E + E L + + Sbjct: 770 KTLNDAIDQWEKAWEKAHDEGNDKDMEYADVQRSEYCKARDELMIFSESLTKFVRSYEYI 829 Query: 982 PIFLDIDDEVVSVKSLYGDYDTPQ 1005 +D D + + Y + Sbjct: 830 AQLIDFGDPSLETFASYARLLRKR 853 >UniRef50_B5V5B2 Type I RM system R subunit n=2 Tax=Bacillus cereus group RepID=B5V5B2_BACCE Length = 995 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 132/1006 (13%), Positives = 285/1006 (28%), Gaps = 113/1006 (11%) Query: 174 KLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQA 233 + + E + +E AK K+Y + + Sbjct: 14 IEDSFIANGYTKRTLEGEASRLFKQYALDVEELFTFLEDTQAKLLRALEKSYGSDYKQKV 73 Query: 234 IKRTLNLSEEESRFLIDAQ---LRKAGWQADSKTLRFSKGARPEPG----VNKAIAEWPT 286 + R + +++ LI ++ G + N+ Sbjct: 74 LNRICDQLKKQ--GLIYCLRHGIKDRGVTLKLIYNKPPTTMNQLMNELYRKNRFTVSRQV 131 Query: 287 GKDETGNQGFADYVLFVGLKPIAVVEAKRN--NIDVPARLNESYRYSKCFDNGFLRETLL 344 + D VLFV P+ V+E K + V + + R + F + Sbjct: 132 -YYSDKHNNSLDMVLFVNGLPLVVMELKNPLTSQTVEHAMKQLKRDRDPKEQLFKFNERV 190 Query: 345 EHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTR 404 Y P+ + ++ + +PF + Y + R Sbjct: 191 VVY-----FAVDPDEVFMTTELKKEKTYFLPFN-------KGNNGGKGNPTVYNNYRTHY 238 Query: 405 NMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMS------ELGLRYYQEDAVRAVEK 458 + L + LL++L + D+ G + + R++Q + VR +E+ Sbjct: 239 LWEEMLVS----DSLLDILFRFVFVKKDDILDSNGETIGERKMLIFPRFHQLNVVRKLEE 294 Query: 459 AI--VKGQQEILLAMATGTGKTRTAIAMMFRLIQSQR------FKRILFLVDRRSLGEQA 510 + Q L+ + G+GKT + + RL + F ++ + DRR L +Q Sbjct: 295 DVQVKSVGQNYLIQHSAGSGKTNSISWLAHRLAKLHDEGNNAVFSSVIVITDRRVLDKQL 354 Query: 511 LGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDC 570 A I K T+I + T+Q + + Sbjct: 355 QDAVYQLEHKAGMVERINKDSNQLAKAIRGETRIIITTLQKFPFIMEKVSDFDRKKY--A 412 Query: 571 IVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-------------------D 611 +++DEAH + L+ RI + + Sbjct: 413 VIIDEAHSSQGGKASTALTNILSDKTLEDAYEEDRIAEENMDNLDEQIVETIMKSGKQDN 472 Query: 612 AVKIALTATPALHTVQIFG--------EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQE 663 A TATP T++ FG + YT R A+ +GF++D + Sbjct: 473 ISFFAFTATPKPKTLEKFGTMGTDGKPHAFHEYTMRQAIEEGFILDVLSNYTAYKTFYKI 532 Query: 664 GVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDP-- 721 + V + ++ + + N+ Sbjct: 533 AKQVDDDPLVSQKQATKKLAQYVSLHPHNIAQK-----------TEIIIEHYRNFTRHKI 581 Query: 722 TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAI----IKITGDADKDARK---- 773 G K +V + HA K + I G+ Sbjct: 582 GGRAKAMVVTASRLHAVRYKIAFDRYIYKMGYDDLKTVVAFSGIVKDGEIPYSEPDMNGF 641 Query: 774 -VQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCP 832 + + +FN + +++ + TG D P + + + + S I Q R R CP Sbjct: 642 SEKELPDKFNSDEY-KVLLVAEKYQTGFDEPLLHTMYVDKPL-SGIKAVQTLSRLNRTCP 699 Query: 833 EVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVELQTLVNEITDSETYKITEADGRS 890 K + D V+ +++ + + L + + E Y+I + Sbjct: 700 --GKEDTFVLDFVNDTEDIKASFQPYYETTGLEEVTDPNILYDLQAELEPYQIFTEEEVQ 757 Query: 891 FAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKG 950 ++ ++ T + ++ +RL+E ++A + F Sbjct: 758 AVNEL--EIKGGFKKSTKAQTELNAWIDKGVERFKRLNEEEKEAFKASVTKFVRTY--AF 813 Query: 951 PHWSAEVFN-KLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLE 1009 A + L L L + + DD + ++ + + Sbjct: 814 ILQIAMFIDVHLHKLYIYLNYLLRKLPRSSKDRDVYMADDVALQYYRNQKVFEGSIELEK 873 Query: 1010 AFDSLVQRS--------PNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAW 1061 ++ + + + L +++ + + E ++ R +E L Sbjct: 874 TGGVNLKPTSHGTGGAVEDEKVRLSSILEKLNERFGTEFTE-TDFLSRDQVKEDMLNNED 932 Query: 1062 KETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWS 1107 + + ++ + D + + +I ++ Sbjct: 933 IQQKAKNNTKDNFKFAFEKSFMDFVIDRMSSNEKFFMKILENEEFK 978 >UniRef50_C7NM10 Type I restriction enzyme R protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NM10_KYTSD Length = 1006 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 151/1037 (14%), Positives = 309/1037 (29%), Gaps = 119/1037 (11%) Query: 162 AQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQE 221 E + L G+ + + + A LAE + +Q Sbjct: 1 MANTREKSFEANVEAHLTGHGWQALAPE-GYDRALGLFPDEVVAWLAESQPKAWEQLVAR 59 Query: 222 RKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPE----PGV 277 ++ + ++ + + AG D T R + G Sbjct: 60 NGGEGLARQRFLTALAGDIDHRGTLAVLRSGTKHAGITVDMATFRPASGLNETIAARYAA 119 Query: 278 NKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNN--IDVPARLNESYRYSKCFD 335 N+ E+ D L + P+A E K + + Y + Sbjct: 120 NRLAVVRQLHHSESRPADSVDVTLVLNGIPVATAELKNPFTHQTIEHAKTQ---YREDRH 176 Query: 336 NGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGI 395 L+ + P + +G+ +PF +NG +G Sbjct: 177 P----NDLIFRSRALVHYAVDPHHVAMTTRLAGQDTRFLPFDQGSNG----PGHPGTAGN 228 Query: 396 WYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRA 455 RD T + + + + + LE+LGS Q++ + L RY+Q AVR+ Sbjct: 229 PQRDGYQTAYLWEEVW---QRDAWLELLGSFIQQR----KEGSSWQVLFPRYHQWHAVRS 281 Query: 456 VEKAIVKGQQEI--LLAMATGTGKTRTAIAMMFRLIQ------SQRFKRILFLVDRRSLG 507 + A + + L+ + G+GK+ T L + + F +++ L DR+ L Sbjct: 282 ILAATYEDGAGVDRLIQHSAGSGKSNTIAWSAHLLSRLHGKDEAPVFDKVVVLTDRKVLD 341 Query: 508 EQALGAFEDTRINGDTFNSIF-DIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPV- 565 +Q T I D K L ++ +I + T+Q + E Sbjct: 342 KQLQNTVAGLEHTEGTIVRIDKDSKQLKASLEGNAARIIITTLQKFPVVMQLAKEQAKET 401 Query: 566 -------ARYDCIVVDEAHRGYILD----------------------KEQTEGELQFRSQ 596 + ++VDEAH E T+G + + Sbjct: 402 GDGGRVMGQRFAVIVDEAHSSTSGSAFSGMKRVLKGGVDEALDDAEAAETTDGNVPGAEE 461 Query: 597 LDYVSAYRRILDHFDAVKIALTATPALHTVQIFG--------EPVYRYTYRTAVIDGFLI 648 + + +R + A TATP T+ IFG P + Y+ R A+ +GF++ Sbjct: 462 DSLLESAQRRGKQSNLSFFAFTATPKPKTLNIFGQTGPDGVKRPFHTYSMRQAIAEGFIL 521 Query: 649 DQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFN 708 D + ++ + + D E +++ F Sbjct: 522 DVLASYTTYDVYYKLINTEPSDPSIDTRKGKAALARHASLHDHMMEGK---AEVIVEHFR 578 Query: 709 RAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEH-------DAII 761 +++ G K +V + HA + + KK Sbjct: 579 EKTAHKV------GGRAKAMVVTRSRLHALKTHQAIERYIKKNGYDKGPGALSALVAFSG 632 Query: 762 KITGDADKDARKVQTMITRFNKERLPN-------IVVTVDLLTTGVDIPSICNIVFLRKV 814 +T + + + F + LP ++V + TG D P + + +K+ Sbjct: 633 SVTDPDTPEVALTEGAVNGFPESELPRRFHDEHQVLVVAEKYQTGFDEPLLHTMYVDKKL 692 Query: 815 RSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT-MRPVVVRPKVELQTLVN 873 S + Q R R P K + D + +++ + +V+ Q L Sbjct: 693 -SGVAAVQTLSRLNRTMP--GKHDTFVLDFANSAEEIQAAFEPFYEQSLAEQVDPQALTT 749 Query: 874 EITDSETYKITEAD------------GRSFAEHSHEQLVAKLQRIIGLATFNRDRSE--- 918 + +T+ + A+ + ++ + R + L + D +E Sbjct: 750 MEQELKTFGVLVAEEMQQAVALVLDGDDTDQGRIYQLVGQAAGRWVMLNERDEDAAETFR 809 Query: 919 -TIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWS--AEVFNKLPGFIARLEKLKTDI 975 T+D R + Q + L + + +P ++ I Sbjct: 810 GTLDAFCRAYTFIAQVMPWADPEQERLFLFGRLLLADLPQREGDSMPQISRSVQLSHLRI 869 Query: 976 NNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDL 1035 + I L+ DE G + + +L+ A + + R Sbjct: 870 AAQGETVIELEGSDEPGEALPGEGKGAEAEPVADKLSALIAVLNEKFGA--ELGDADRLW 927 Query: 1036 TRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDH 1095 + + + D Q + R+A++ E + L+ ++ ++ Sbjct: 928 FEQQTMVVAHDVDMQDVARHNDRRAYRLVVEERVEDMLLDRDQQNGKLFSMFFENLDFRR 987 Query: 1096 ALTRIKGENDWSSEQLS 1112 + + + Sbjct: 988 MMVEHIVGQTYDKARRQ 1004 >UniRef50_Q5NWL0 Type I restriction-modification system (Restriction subunit) n=4 Tax=Betaproteobacteria RepID=Q5NWL0_AZOSE Length = 714 Score = 364 bits (935), Expect = 9e-99, Method: Composition-based stats. Identities = 165/731 (22%), Positives = 270/731 (36%), Gaps = 150/731 (20%) Query: 241 SEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYV 300 +E SR IDAQL+ GW+ N E+ ADYV Sbjct: 3 NEAFSRVKIDAQLKDQGWEI--------------LNPNAVRFEYVLSDGTK-----ADYV 43 Query: 301 LFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 L + +AVVEAK+ I+ ++ Y+ Sbjct: 44 LCDRHGRALAVVEAKKAAINPAEAEAQAKAYAVQLQ------------------------ 79 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 +P+ + NG E R W + + + + +L Sbjct: 80 --------------VPYIFLANGEEIR--------FWEWE---REAFPRTVKTFFAQSDL 114 Query: 420 LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTR 479 + K++ + R YQ + + + I G++++L+ MATGTGKTR Sbjct: 115 ERRAATGQVKRDPLTVQIDKH--IVERDYQTACIDKLCQEITAGRRKLLVEMATGTGKTR 172 Query: 480 TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE 539 TA A + RL ++ R+LFLVDR L +Q AF + + + T + + Sbjct: 173 TAAAFIKRLFEANAVTRVLFLVDRIPLAKQTEDAFAEHLSDFPAYVL------RTGRRFQ 226 Query: 540 DSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDY 599 D +I + T+QS+V + +D ++ DE HR Sbjct: 227 DEKRITITTLQSMVNIYHE----YSAGYFDLVISDECHRSIYG----------------- 265 Query: 600 VSAYRRILDHFDAVKIALTATP----------------ALHTVQIF--GEPVYRYTYRTA 641 + +L HFD +++ LTATP T++ F +P + Y + A Sbjct: 266 --KWSGVLKHFDGIQVGLTATPCVANLGDLGDAEDKLFVRDTLRFFEVDKPTFSYKMKDA 323 Query: 642 VIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLE-----DDQDFEVA 696 + DG+L+ + A EG + K +++ + + + D + Sbjct: 324 IHDGYLVPYQIYKAKTVKTAAEGGFEVKRGELDWSAMDTTTRAEFEKLFEGSDAIVIDPN 383 Query: 697 DFNRGLVIPAFNRAVCNELTNYLDPT-----------GSQKTLVFCVTNAHADMVVEELR 745 R IP NRA+ E L+ KT+VF VT HA+ + + Sbjct: 384 ALERKFTIPERNRAIVREFREVLEKGFTDAKGVVRKPLLGKTIVFAVTKRHAETLAQLFD 443 Query: 746 AAFKKKYPQLEHDAI-IKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPS 804 +AF + P E ++G D T I RF KE P ++V+V++L TG D P Sbjct: 444 SAFADQKPSPEVRYADYVVSGMGKDDTVDGMTKIKRFKKEPFPKVLVSVNMLDTGFDCPE 503 Query: 805 ICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTM------- 857 + N+VF R RS ILY+QM+GR TR K F +FD V + D Sbjct: 504 VANLVFARFTRSAILYQQMRGRGTR--KAKGKPVFTMFDFVGVTDYHGDNDAEGEGGIVI 561 Query: 858 ------RPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLAT 911 RP R + L + + + + DG + EQ A++ Sbjct: 562 QKAAPKRPTEPRKLLSLDIDDHIDPTTREWVTVDEDGNMVFPEASEQKQAEIGARFEAWL 621 Query: 912 FNRDRSETIDK 922 ++ + + D+ Sbjct: 622 LAQEETLSPDE 632 Score = 45.9 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 8/82 (9%) Query: 1093 VDHALTRIK--GENDWSSEQLSWLDRLAQALKEKVVL----DDDVFKTGNFHRRGGKAML 1146 + E S ++ WL + L V F F GG Sbjct: 613 IGARFEAWLLAQEETLSPDEARWLRTVGSQLYANVDAWDEFTAGHFAFPPFTLMGGLPEA 672 Query: 1147 QRTF--DDNLDTLLGKFSDYIW 1166 R F LDTLL +D ++ Sbjct: 673 LRVFSSGKRLDTLLESLNDAVF 694 >UniRef50_C3GR20 Type III restriction protein res subunit n=1 Tax=Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1 RepID=C3GR20_BACTU Length = 1014 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 134/919 (14%), Positives = 285/919 (31%), Gaps = 112/919 (12%) Query: 264 TLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR--NNIDVP 321 L + I ++ N D VL V P+ +E K V Sbjct: 109 NLNYETLQNYNANQFTCIRQFA---YSPNNNKTIDMVLLVNGIPLIALELKNQYTGQSVE 165 Query: 322 ARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTN 381 + + + F T Y + + +G + F +PF +N Sbjct: 166 NAKVQFQQDRDPKELVFQFNTRFLVYFAVDHY-----EVFMTTKLAGNKTFFLPFNQGSN 220 Query: 382 GREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSE----PQKQNQWFADN 437 G + D T + + + + + +++++ +K+ Q + Sbjct: 221 GPGRVGGKGNPENM---DGYPTAYLWEQV---LQRDNVMDIIQRFMNLEIKKEKQGDREI 274 Query: 438 PGMSELGLRYYQEDAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLIQSQR-- 493 + + RY+Q D VR + + + + + L+ + G+GK+ + + + L + Sbjct: 275 KKKTLIFPRYHQLDVVRELLEDVKENGSGENYLIQHSAGSGKSNSIAWLAYHLASAHDVN 334 Query: 494 ----FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTD--KFPEDSTKIHVA 547 F ++ + DR L Q +I D K D K D KI + Sbjct: 335 NNPIFASVIIVTDRTILDRQLQNTIMSFDHTAGQVETIDDRKTSQDLKKAINDGKKIIIT 394 Query: 548 TVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRIL 607 T+Q + + M + ++VDEAH + Q + Y+ I Sbjct: 395 TLQKF--PIIYQEVEMEKGKNYAVIVDEAHSSQTGNSAQKLKAALADKEATLQE-YQEIE 451 Query: 608 D----------------------HFDAVKIALTATPALHTVQIFGE--------PVYRYT 637 + H + A TATP T+++FG P + Y+ Sbjct: 452 ENIENTTLDDQDELVKTLLAQGRHSNLSFFAFTATPKEKTIEMFGTKQKDGSFAPFHVYS 511 Query: 638 YRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVAD 697 R A+ +GF++D + + + ++ + + Sbjct: 512 MRQAIEEGFILDVLKNYMTYKTSYRIAKEIDDNPELPKTEAVRAIARYQSFHPWVLRQKT 571 Query: 698 FNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKK-YPQLE 756 +++ F + G K +V + HA ++E + ++K Y L+ Sbjct: 572 ---EVMVEQFREVTKKAI------GGKGKAMVVTPSRLHAVRYMQEFKTYIEEKGYIDLD 622 Query: 757 HDAIIKITGDAD-------------KDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIP 803 T + D R + + NI++ + TG D P Sbjct: 623 VLVAFSGTVNDDGIEYTEPSMNVTKDGERIKENQLKEAFHTDDFNILIVAEKYQTGFDEP 682 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV--DTMRPVV 861 + + +K+ S + Q R R K I D V+ + Sbjct: 683 LLHTMFVDKKL-SGVKAVQTLSRLNRTI--QGKKDTFILDFVNTEDEILEAFQPFYEVTT 739 Query: 862 VRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQL-VAKLQRIIGLATFNRDRSETI 920 + ++ + + + + Y I D +Q + +R++G + Sbjct: 740 LDSEININLIYDTQSKLRKYNIYNQDDIDAVIKLVKQAQKKQDERLLGRISSLFKPVIQR 799 Query: 921 DKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNK------LPGFIARLEKLKTD 974 + R + NF + + + + E+ + L FI + ++ K D Sbjct: 800 YDDLPRDTQYEFRVTLRNFGKWYNYASQLDRTFDMELLEENIFTNYLLNFIPKEQREKID 859 Query: 975 INNLNDAPIFLDIDDEVVSVKSLYGDYD-----TPQDFLEAFDSLVQRSPNAQPALQAVI 1029 I + + D + + D D P++ + P + +L+ +I Sbjct: 860 IADKVKLEYYKLQKDFEGEIMLIAEDGDSGVLSNPKEINASIK-----PPEERDSLEEII 914 Query: 1030 NRPRDLTRKGLVELQEWFDRQHFEESSLR---KAWKETRNEDIAARLIGHIRRAAVGDAL 1086 +R + E + ++ + K +N + L Sbjct: 915 HRINERFPDDFKESDKVLVEALYKSFKQKPDLKLVNMAKNNSSEMFENNLFKDIFQDIVL 974 Query: 1087 KPFEERVDHALTRIKGEND 1105 + + E A +++ G ++ Sbjct: 975 EKYAEN-QAAFSKLVGSDE 992 >UniRef50_B6ALE7 Putative DEAD/DEAH box helicase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALE7_9BACT Length = 756 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 170/811 (20%), Positives = 283/811 (34%), Gaps = 134/811 (16%) Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGK-----DETGNQGF 296 E ++R LID +LR GW K+ + + E P E G Sbjct: 7 ETDARILIDDRLRAVGWDPADKSQVLTSVLIRNKTSPFSTTESPEDHSFAAEGEDAYSGQ 66 Query: 297 ADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 ADYVL + +AV+EAK+ ID ++ Y++ Sbjct: 67 ADYVLLDQRGRSLAVIEAKKQKIDPYTAKQQTLPYARSI--------------------- 105 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 PF + +NG I++ D + ++ + + Sbjct: 106 -----------------GAPFIFLSNG----------ELIYFWDYLNED--ARPVDSFFS 136 Query: 416 PEELLEMLGSEPQKQNQWFADNPGM-----SELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 +L ++ ++++ P +R YQ++A++A+++ I G++ L+ Sbjct: 137 RRDLERLVHMRSERKSLATIPIPETYVRQGETRLVRPYQKEAMQALDRTIELGKRRFLIE 196 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDI 530 + TGTGKT + RLIQ+ +RILFLVDR L QA+ A +D Sbjct: 197 LPTGTGKTDLISLYLKRLIQAGYAERILFLVDRDQLARQAIEAIQDLLPVH-------SS 249 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 L +I V +Q+++ R + +D +V DE HR Sbjct: 250 YWLKSGMVRQEKQITVCLLQTMIGRVAE----FTSGYFDVVVADECHRSIYG-------- 297 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTAV 642 A++ L FDA+ I +TATP +T + P Y Y+ + A Sbjct: 298 -----------AWQTALTRFDALHIGMTATPAMYIERNTFDFYQCQDETPDYSYSIQEAF 346 Query: 643 IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL 702 DG+L+ I T + + +GE D E ++ + NR + Sbjct: 347 RDGYLVPYKFATGITT-------------ILSEGADEGEEHYDPAEFERKWTNKSTNRLM 393 Query: 703 VIPAFNRAVCNELTNY--LDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAI 760 + F+R + TG K++VF +T HA + L +P+ + Sbjct: 394 M-KEFDRISWQIYKDLAPGQRTGPGKSVVFAITKHHAARLARYLNEL----HPEAKGRYA 448 Query: 761 IKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 IT D +I RF +E P + V+V +L TG D I ++V R+VRS ILY Sbjct: 449 EVITSDIP----DANDLIRRFKREEYPQVAVSVGMLDTGFDCREILHLVLCRRVRSPILY 504 Query: 821 EQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSET 880 +QM+GR TR + K F I+D + DT E + Sbjct: 505 QQMRGRGTRTADHIGKNKFIIYDFFKNHEYFNDSDTDIFSGSGGGGEARPRPPHPVTGRK 564 Query: 881 YKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFN 940 + E L A +G D+ E + + + E G Sbjct: 565 LVELGLED--------EWLDAVHYIEVGPDGERVDKREYVTDWEKVVRE---GEEGDPQI 613 Query: 941 GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD 1000 R + KL + N LD + + Sbjct: 614 VKIKRGESLTEEEEQILIGKLNQPTRYFNEENLRRAYRNPGGNLLDFIRTALGLVKTKTM 673 Query: 1001 YDTPQDFLEAFDSLVQRSPNAQPALQAVINR 1031 + ++ A+ + +P L + NR Sbjct: 674 EEKIEENFRAWLVTRELTPEQAQYLALLKNR 704 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 89/275 (32%), Gaps = 14/275 (5%) Query: 904 QRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPG 963 + I+ L R RS + +Q+R D G N + ++ Sbjct: 487 REILHLVLCRRVRSPILYQQMRGRGTRTADHIGKNKFIIYDFFKNHEYFNDSDTDIFSGS 546 Query: 964 FIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLY-----GDYDTPQDFLEAFDSLVQRS 1018 + + + L ++DE + G+ ++++ ++ +V+ Sbjct: 547 GGGGEARPRPPHPVTGRKLVELGLEDEWLDAVHYIEVGPDGERVDKREYVTDWEKVVREG 606 Query: 1019 PNAQPALQAVINRPRDLTRKGLVELQEWFDRQH--FEESSLRKAWKETRNEDIAARLIGH 1076 P + + R LT + L ++ F E +LR+A++ L+ Sbjct: 607 EEGDPQIVKI-KRGESLTEEEEQILIGKLNQPTRYFNEENLRRAYRNPG-----GNLLDF 660 Query: 1077 IRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGN 1136 IR A K EE+++ + + EQ +L L K ++ D Sbjct: 661 IRTALGLVKTKTMEEKIEENFRAWLVTRELTPEQAQYLALLKNRGIVKGMVSLDDLFVPP 720 Query: 1137 FHRRGGKAMLQRTFDDN-LDTLLGKFSDYIWDELA 1170 + F + L ++ + + + A Sbjct: 721 LSLQNAGETGIELFGEQGLKQVVDDLNHSVLSQSA 755 >UniRef50_UPI0001BC3736 type I restriction-modification system, R subunit n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC3736 Length = 917 Score = 364 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 194/973 (19%), Positives = 350/973 (35%), Gaps = 168/973 (17%) Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADY 299 L EE++R ID QL +GW S+ P ++ A+ E +DY Sbjct: 2 LPEEKARVKIDKQLMDSGWNIVSR-------DEYIPNLSLAVKE-----ALMQGGKESDY 49 Query: 300 VLFVGLKPIAVVEAKRNNIDVP-ARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPE 358 +LFV K IAV+EAK+ + ++ Y+ N + Sbjct: 50 LLFVDNKAIAVIEAKKEEKSLGIDVAKQAENYAVTPKNWYG------------------- 90 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEE 418 IP Y NG + + D+ L E H P++ Sbjct: 91 ---------TWFDNLIPLVYLANGNKILFKNM---------LTDSDGDYIELTEMHSPKK 132 Query: 419 LLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKT 478 +L+++ + + P + E GLR Q +A E +I KGQ++ L +ATG+GKT Sbjct: 133 MLQLIEMKSEYG-----ALPRIEEKGLRNCQYEAEVNFENSIRKGQKKALAVLATGSGKT 187 Query: 479 RTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTR--INGDTFNSIFDIKGLTDK 536 A +R + + +R+LFL DR +L QA F+ N ++ I LT K Sbjct: 188 YLACLAAYRQLNYTQTRRVLFLADRNNLARQAETEFKLFDRTEKQQPLNDLYTINRLT-K 246 Query: 537 FPEDSTKIHVATVQSL--------------------VKRTLQSDEP---------MPVAR 567 + ++ I ++T+Q L + + DEP + Sbjct: 247 PDKINSDIVISTIQKLFAVLTGQKIDDIDEDEEDDKSFISDEKDEPEVKLGNNLKLSPDH 306 Query: 568 YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPALHTV 626 + I+VDE HR ++ +L +F DA + LTATP Sbjct: 307 FQFIIVDECHRSIYG-------------------KWQSVLKYFKDAKILGLTATPKPEAY 347 Query: 627 QIF-GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND 685 F + +YTY +++DG + +I T + G + KG V + G+ ++ Sbjct: 348 AFFNNNIIEKYTYEDSIVDGVNVPNRV-YRIKTEQTEHGGAIEKGATVIETTRNGKKVDF 406 Query: 686 TLEDDQ-DFEVADFNRGLVIPAFNRAVCNELTN--YLDPTGSQ--------KTLVFCVTN 734 + + + D+ A +R +V P R E Y D + KTL+F + Sbjct: 407 YISNKRIDYTEAQLDRSIVSPEQIRLNLEEFKKSIYTDLFPERKVSWNYIPKTLIFAKDD 466 Query: 735 AHADMVVEELRAAFKKKYPQ--LEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVT 792 HA +V ++ F + + + + KIT A +I F + I VT Sbjct: 467 HHATEIVNIVKEVFAQNFDDSIIPEKFVQKIT----YSAGDTDALIREFRTNKEFRIAVT 522 Query: 793 VDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC----------PEVNKTSFKIF 842 V L+ TG D+ + + F+R V S +LY QMKGR R+ K F I Sbjct: 523 VTLVATGTDVKPLEVVFFMRDVNSDVLYTQMKGRGCRVISDDKLREVTPNATTKDCFYIV 582 Query: 843 DCVDIYSTLESVDTM---RPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQL 899 D + + + + + +L+ L+ ++ A R + + + Sbjct: 583 DAIGVTEHDKQIPKAGNGKGGQKNKTPKLEQLLEYLSHGYVSDDNLALLRDYCATINHRY 642 Query: 900 VAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFN 959 L TF + + + + ++E F +S+ + N Sbjct: 643 EENALFGHHLKTFISNYNFSPKELAFNINEALSKNILPPFESVSSKNGARN--------N 694 Query: 960 KLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSP 1019 + I L K + +D+++ + F+E F+ + + Sbjct: 695 LISCLITNLGARKKLLELHRGYYAVSPDEDKLIEKGF---SQEQALSFIENFEKYITENA 751 Query: 1020 NAQPALQAVINRPRD-LTRKGLVELQEWF--DRQHFEESSLRKAWKET------------ 1064 ++ AL+ + N +T L+ELQE + + F + + +K Sbjct: 752 DSIEALRIIYNSEDTVITHSMLLELQERLLSENRSFTPTKIWGNYKLLDTDSNVDELDIS 811 Query: 1065 RNEDIAARLIGHIRRAAVGDA-LKPFEERVDHALTRI--KGENDWSSEQLSWLDRLAQAL 1121 +N + LI +R A + L + T + + + ++ + +A + Sbjct: 812 QNTNALTNLIQIVRYAYKKNPKLISLLKGYSQRFTLYCGQAQRTLTEDKKDIMKHIADYI 871 Query: 1122 KEKVVLDDDVFKT 1134 + + Sbjct: 872 INDGYISINELNE 884 >UniRef50_B9TB59 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TB59_RICCO Length = 903 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 126/881 (14%), Positives = 253/881 (28%), Gaps = 93/881 (10%) Query: 299 YVLFVGLKPIAVVEAKRN---NIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEA 355 V FV P++V+E K DV A N+ Y F + Sbjct: 1 MVAFVNGLPLSVIELKNPADEKADVYAAFNQIGNYKNEIPQLFEPNVVCVISDGTVARIG 60 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 + +E + G+ D + + Sbjct: 61 SI----------------------SADQERFMPWRVADGLDNPD--QHLELEVLVKGLFE 96 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAV----RAVEKAI--VKGQQEILL 469 + L L + G ++ Y+Q V ++I + + ++ Sbjct: 97 RKTFLTYLRHFVAYT----TNGAGTFKVVAGYHQYHGVLKGVERALESIHNRRDGKGGVM 152 Query: 470 AMATGTGKTRTAIAMMFRLIQSQR--FKRILFLVDRRSLGEQALGAFEDTRINGDTF-NS 526 G+GK+ A+ + L + I+ + DR+ L Q F RI T Sbjct: 153 WFTQGSGKSFLAVFYVGLLREHPDLENPTIVVVTDRKDLDGQLYETFASCRIPLRTVPVQ 212 Query: 527 IFDIKGLTDKFPED-STKIHVATVQSLVK-RTLQSDEPMPVARYDCIVVDEAHRGYILDK 584 D L E + I T+Q + + + E + ++ DEAHR K Sbjct: 213 ATDRADLKKHLSEQVAGGIFFTTIQKFAPEKGMDTVEELSDRHNIIVICDEAHRTQYGFK 272 Query: 585 EQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRT 640 + + + + L +A+ + LT TP T +FG V Y Sbjct: 273 SELDKKGEKYRY-GLAKYMHDALP--NALYLGLTGTPISENDRDTEAVFGTYVDIYDVLA 329 Query: 641 AVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNR 700 + DG + +II + S +++E++ + ++ Sbjct: 330 SQKDGTTVPIHYEQRIIDLAVNKDELDSLDDELEKLLEDD---PEEQSTKTISALSRLES 386 Query: 701 GLVIPAFNRAVCNELTNYLDPTG---SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEH 757 + + ++L + D K ++ ++ A + +E+ + + Sbjct: 387 IAMADGRLEKLADDLVAHWDDRLETIDGKGMIVAISRKAAVGLYDEIIKRRPEWHADDID 446 Query: 758 DAIIKITGDAD-----------KDARKVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSI 805 +IK+ + A++ + + R P +V+ D+ TG D P + Sbjct: 447 KGVIKVVMTSPASDPANLRKHATSAQEKKMLEKRIKDPDDPLRLVIVRDMWLTGFDAPCL 506 Query: 806 CNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPK 865 + + +R + L Q R R+ +K + D + I L++ Sbjct: 507 HTLYVDKPMRGQGLM-QAVARVNRVW--KDKPGGLVVDYIGIGEELKAAIAQYTRARGHD 563 Query: 866 --------VELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRS 917 E +++ E + D A + L A + L N+ + Sbjct: 564 HGEPVEFIDEALSILKETIGIIRDMLHGIDLTGVATDAKRALAALPLAMNHLVKLNQKKE 623 Query: 918 ETIDKQ-----VRRLDELCQDAAGVNFNGFA-SRLREKGPHWSAEVFNKLPGFIARLEKL 971 + + R LD++ + G L + + + Sbjct: 624 GAKEDEKPEGVKRFLDQVVKLTKAQALAGTHPDALLLRNEIAFYQAVRAGLVKFTSVGAG 683 Query: 972 KTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINR 1031 K+ + + V V LY + + D P Sbjct: 684 KSKVEKEAAMRQIVAKGVLVNGVTDLYKTLGVDKPDISVLDETFLNKLGEIPQKNLAAEL 743 Query: 1032 PRDLTRKGLV-ELQEWFDRQHFEESSLRKAWKETRNE-----DIAARLIGHIRRAAVGDA 1085 + L + Q + L +A K+ N + LI + A Sbjct: 744 LQRLIDDEIHARAQRNTTQALKFSKKLAEAIKKYTNRGLTSAQVIEELIKLAKEIAKDQP 803 Query: 1086 LKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVV 1126 E + + S D + +AL ++ Sbjct: 804 PPDMTE---DEFAFYEALRENESAVREMGDPILKALAHELT 841 >UniRef50_Q1CT24 Type I restriction enzyme R protein n=12 Tax=Helicobacter pylori RepID=Q1CT24_HELPH Length = 1003 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 138/993 (13%), Positives = 304/993 (30%), Gaps = 123/993 (12%) Query: 140 ENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQAR 199 E + T+ + K ++E E +++ + L + +E E + Sbjct: 4 ETIAESNESTVVAEFHSNNERKNAYESEAELEREFIALLQKQGYEFKKIHKEEELK---- 59 Query: 200 LAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLI-DAQLRKAGW 258 L+ QL + N E + + Q I + + +++ + D Sbjct: 60 -DNLKEQLEKLNNHSFTPKEWD------TLYSQFIANKNDDYKAKTKKIQEDPIFNLTLE 112 Query: 259 QADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNI 318 +K ++ + I ++ + + D + V P+ VE K+ + Sbjct: 113 NGKTKNIKIIDKKNIHRNALQVIHQYS---AKGKYENRYDVSILVNGLPLVHVELKKRGV 169 Query: 319 DVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCY 378 + N+ RY + + + Y + + ++ K Sbjct: 170 AIREAFNQIKRYQRDSFSAEDGLFEFVQIFVISNGTSSKYYSNTTRIAQIEKNHKA---- 225 Query: 379 STNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP 438 + E+ D+ D + LL +L ++ Sbjct: 226 --DTFEFTNYWADSKNHNIEDLMDFA------KAFFAKRSLLNVLTRYCVFTSEEV---- 273 Query: 439 GMSELGLRYYQEDAVRAVEKAIV---------KGQQEILLAMATGTGKTRTAIAMMFRLI 489 L +R YQ A + + I K Q + TG+GKT T+ Sbjct: 274 ---LLVMRPYQIVAAERILEQIKTAQNSKTYKKSQSGGYIWHTTGSGKTLTSFKSATLAK 330 Query: 490 QSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATV 549 + + ++LF+VDR+ L Q + ++ D NS K L ++ + + KI + T+ Sbjct: 331 ELEGVSKVLFVVDRKDLDYQTMKEYDKF--QKDCANSNTSTKILKEQLEDSNAKIIITTI 388 Query: 550 QSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDH 609 Q L K ++ DE HR + Q + + Sbjct: 389 QKLDKFVKSHKGHAIFNEEVVMIFDECHRSQLGSMHQAITKAFKKYH------------- 435 Query: 610 FDAVKIALTATPAL-----------HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIIT 658 T TP T Q FG +++YT A+ D ++ T Sbjct: 436 ----LFGFTGTPIFAQNCDKNNPLGTTEQKFGTCLHQYTIIDAIRDKNVLPFRVEYH-NT 490 Query: 659 RNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC----NE 714 A+EG+ + V+ S + + +++ + FN+ FN + Sbjct: 491 IKAKEGIKDKEVRAVDEKS--ALLDSRRIKEIAKCILERFNQATKNKRFNSILACSSIEA 548 Query: 715 LTNYLDPTGSQK-----TLVFCVT------------NAHADMVVEELRAAFKKKYPQLEH 757 L Y +K +F + N A+ + + R + Sbjct: 549 LKKYYQAFKEEKHDLKIAAIFSYSANEELEALEDENNESANRLDKSSRDFLEGAIADYNG 608 Query: 758 DAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 + K + + + R ++++ V++ TG D + + + ++ Sbjct: 609 MFGVSFDTSDQKFQSYYKDLSQKMKN-REIDLLMVVNMFLTGFDATRLNTLWVDKNLKYH 667 Query: 818 ILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITD 877 L Q RA R+ V KT I D+ L + + L + Sbjct: 668 GL-IQAFSRANRILDSV-KTHGNIVCFRDLEQDLNDALMLFGNKDAQSIALLRKYEDYLK 725 Query: 878 SETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGV 937 T E +G E E+L+ + + + + + ++ ++ + + Sbjct: 726 GYTDNHKEYEGY---EGLIERLLREFPLKEPIVSEGQKK-----DFIKLFGKILKLENIL 777 Query: 938 NFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVV-SVKS 996 N + P + +K F + +I+D+++ ++ Sbjct: 778 NSFENFKKDDYINPRDFQDYQSKYLDFYDEMR--------PEKGRDKEEINDDLIFEIEL 829 Query: 997 LYGDYDTPQDFLEAFDSLVQRSPNAQ----PALQAVINRPRDLTRKGLVELQEWFDRQHF 1052 + L + + ++ +IN +L K +L F ++ Sbjct: 830 IKQVEVNIDYILNLIEEFAKEHGVEIQGVKTKIEPIINSSIELRNK--KDLIMDFIDKYN 887 Query: 1053 EESSLRKAWKETRNEDIAARLIGHIRRAAVGDA 1085 ++ + +++ ++ I + + Sbjct: 888 KDQEVHAHFQDYIHQKREEEFQNIIEENRLNEE 920 >UniRef50_C2ZGZ1 Type-1 restriction enzyme R protein n=7 Tax=Bacteria RepID=C2ZGZ1_BACCE Length = 922 Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 137/951 (14%), Positives = 286/951 (30%), Gaps = 112/951 (11%) Query: 176 VALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIK 235 + +Q +T+ +L A LA +L K E+K + +TD+ K Sbjct: 8 YQSEAQLEKHLVEQLQTQGYEAIQLPDYAAVLANFRTQLNK--FNEKKLNGQPLTDKEFK 65 Query: 236 RTLNLSEEE-----SRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDE 290 R L +E++ ++ L D L + + D L + N T Sbjct: 66 RVLVATEDKSIYESAKILRDKLLIE---REDGTELYLELMNTKQWCKNLFQVTTQTTMF- 121 Query: 291 TGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPD 350 + D +F+ PI +E KR +D N+ RY + G + S Sbjct: 122 GKYENRYDVTIFINGLPIVQIELKRRGLDFKEAFNQIQRYRRHSFQGLYHFLQIFVVSNG 181 Query: 351 EVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKAL 410 + + Q F + + E N+ Sbjct: 182 VDTKYFSNSDYDIQFG---------FTFFWSDEENNII---------------TNLQDFT 217 Query: 411 PEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 + +P L +M+ ++ + + +R YQ AV A+ K + + Sbjct: 218 KVFLQPCHLAKMVSRY------MIINDTDKALMVMRPYQVYAVEALVKRANETNNNGFIW 271 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDI 530 TG+GKT T+ L + K++ FLVDR+ L Q F + + Sbjct: 272 HTTGSGKTLTSFKAGQILANEESIKKVFFLVDRQDLDSQTTAEFNKF--EKGSVDRTDKT 329 Query: 531 KGLTDKFPEDSTKIHVATVQSLVK-----RTLQSDEPMPVARYDCIVVDEAHRGYILDKE 585 L + + V T+Q + R + EP ++DE HR D Sbjct: 330 DELIKQIKNPMKRFIVTTIQKMSNAVKNPRYEKIMEPYKQEH-VVFIIDECHRSQFGDMR 388 Query: 586 QTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATP---------ALHTVQIFGEPVYR 635 + I HF +A T TP T +F + ++ Sbjct: 389 ------------------KDIDHHFQNAQYFGFTGTPRFEENKSQDGRTTADLFEKCLHH 430 Query: 636 YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEV 695 Y + A+ DG ++ ++ + +K E ++ + D + Sbjct: 431 YLIKDAIRDGNVLGFSVEYISTFQSKADEFDDTKVEGIDTDEVLRHPTRLNMIADHIIDN 490 Query: 696 ADFNRG------LVIPAFNRAVCNELTNYLDPTGSQKTLV---FCVTNAHADMVVEELRA 746 + + + + + + K F +D E R Sbjct: 491 HNRRARSKGYCGIFAVDSIQTLIKYYDLFKSKNHNLKIAGIYSFGAN-EESDGTEEHSRE 549 Query: 747 AFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSIC 806 A + D R + + + ++ +I++ V++ TG D + Sbjct: 550 ALDRMIVDYNQMFGT--DYSTDTWDRYFSDVSKKMKQAQI-DILLVVNMFLTGFDSKPLN 606 Query: 807 NIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKV 866 + + ++ L Q R R+ + K + ++ + + Sbjct: 607 TLYVDKNLQYHNLL-QAYSRTNRV-EKATKPYGNVVCYRNLKDQTDDTIRLFSKTDSVDD 664 Query: 867 ELQTLVN----------EITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDR 916 L + E + D E+ E +VA L Sbjct: 665 VLMQNYDAYLAKFKEALEGLKKVAASPEQVDALQTEENQREFIVAFKNVTKMLQRLQSFS 724 Query: 917 SETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDIN 976 D+ ++ E + + RL+++ P + + + + + +++ Sbjct: 725 DFEFDEDELQITEQSYEDYKSKYFKIHDRLKKEDPRKE-SILQDIDFELELMHTDRINVS 783 Query: 977 NLNDAPIFLDIDDE--------VVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAV 1028 + + L +DDE ++ + + + + +E + + + ++ Sbjct: 784 YIMNLIANLTMDDEKTRDQEIKLIKQELDHASDEKLRLKVELIHNFLDKIVPQLGTNVSI 843 Query: 1029 INRPRDLTRKGLVELQEWFDRQ-HFEESSLRKAWKETRNEDIAARLIGHIR 1078 ++ + E F + E+S L++ +I R Sbjct: 844 LDEYSKYEEEIKEEEMNTFASEVGLEQSVLKEQVATYEYANIIEDSTIMDR 894 >UniRef50_A8ZYK5 Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYK5_DESOH Length = 1020 Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 116/841 (13%), Positives = 257/841 (30%), Gaps = 95/841 (11%) Query: 259 QADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAK---R 315 + + + F ++ + D VL V P+ +EAK R Sbjct: 98 EGEDRDFYFIDFEDIWQNSLIVTNQYWVQGFKMVK---TDIVLLVNGIPLVPIEAKQRAR 154 Query: 316 NNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP----EYETSWQDTSGKQR 371 + + + Y + D F+ + +P Y W+ T + Sbjct: 155 KGTNWLEGVKQFSTYDQRADKLFMCHGFSVACNGRITKYGIPGASSSYFNEWKSTVLETG 214 Query: 372 FKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKA-----LPEWHRPEELLEMLGSE 426 P N + R + +P +L+++ + Sbjct: 215 QNNPILDQDNDLCRTYLNDEDGFYHFDVERLPNGEVLERMKLGIIGLLQPARVLDIVKNF 274 Query: 427 PQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ-QEILLAMATGTGKTRTAIAMM 485 + + + + RY Q A + + + ++ ++ G+GK+ T + Sbjct: 275 LVFER----TDGKIIKKVARYQQLRAANKIVHRVAESDLKQGVIWHTQGSGKSLTMLYTA 330 Query: 486 FRLIQSQ--RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTK 543 ++L + + +VDR+ L EQ G F+D +++I L + Sbjct: 331 YKLRNTPGLDDPTVYIVVDRKDLREQIGGTFDDCAF--PNARPVYNIGDLKHIIDKAPAG 388 Query: 544 IHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAY 603 + + TVQ + I++DEAHR D + + Sbjct: 389 VFITTVQKFQ----ELGNRQDTRDNIIILIDEAHRTQYGDFQIELQNVLP---------- 434 Query: 604 RRILDHFDAVKIALTATPALHTVQIFGE---------PVYRYTYRTAVIDGFLIDQDPPI 654 +A + A T TP T Q FG + +Y A+ DG + Sbjct: 435 -------NARRFAFTGTPIPKTYQEFGAKKDKGTQEYYLDKYGILDAIEDGATVPIRYTF 487 Query: 655 QIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNE 714 + +L K + + + + + + V + L + + + Sbjct: 488 ------GPQEWFLDKEKLKQGYDEITADLTEDEKRLVEKRVQAWKVFLKHEDRIKVLAKD 541 Query: 715 LTNYLD---PTGSQKTLVFCVTNAHADMVVEELRAAFKKKY-------PQLEHDAIIKIT 764 + K V + EL F + E ++ Sbjct: 542 IAEDFKSVVEPQGFKAQVVACDKEACVLYYNELLKYFDRSELTIIFSTGNYEEGERYELF 601 Query: 765 GDADKDARKVQTMITRFNK---------ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVR 815 D K+ ++ + +I F K I++ ++L TG D P + +R Sbjct: 602 KDHYKEDKERRQLIANFKKRITPDEQREGNNLKIIIVCNMLLTGFDAPIEQTMYLDSPIR 661 Query: 816 SRILYEQMKGRATRLCPEV----NKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTL 871 L Q R R + +K +I D + ++ + P + ++++L Sbjct: 662 DHNLL-QAVARTNRPYDDRVSKLSKEFGRIVDYIGVFENYKEALNYDPEDIGEFEDVESL 720 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSE-TIDKQVRRLDEL 930 V++ + E + ++E + ++++ L ++ + + + Sbjct: 721 VDQF-PNVLEAAFEPFKDIKLKDTYECSMEIVRKLTELDQGKFEQDYREVLQLWEAISPH 779 Query: 931 CQDAAGVNFNGFASRLREKGPHWSAEVF-------NKLPGFIARLEKLKTDINNLNDAPI 983 + + + + E + K I KL +L + I Sbjct: 780 PKLRDHQKKYRWLNEIYEIYLEEFKRLDFNSEIYAAKTRKLIQESAKLINFKGHLPEVKI 839 Query: 984 FLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVEL 1043 + +E+ K D + + +++++R+ A NR +L +K + Sbjct: 840 DSNYLNELKETKL--SPSDKAEKLIRDIETVIRRNEANSAAYVEFQNRLEELIKKKQEKS 897 Query: 1044 Q 1044 + Sbjct: 898 E 898 >UniRef50_Q30S05 Type I site-specific deoxyribonuclease HsdR n=5 Tax=cellular organisms RepID=Q30S05_SULDN Length = 1030 Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 114/863 (13%), Positives = 255/863 (29%), Gaps = 120/863 (13%) Query: 261 DSKTLRFSKGARPEPGVNKAIAEWPTGKDETG---NQGFADYVLFVGLKPIAVVEAKRNN 317 S + R+ E E+ + D ++FV P+ V+E K+++ Sbjct: 117 KSFSFRYIDFENIENNHFFVTEEFIVDRANQNEITKTRRPDLMVFVNGIPLVVIELKKSS 176 Query: 318 IDVPARLNESYRYS--KCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIP 375 ++ + + + + F L + +E P Sbjct: 177 LNYENGIKQLEKEQKKDEIPHLFKYIQLTIAANSNEARYG---------------TMGTP 221 Query: 376 FCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFA 435 + + +E + + R+ ++ L + LL ++ Sbjct: 222 LKFYSLWKEEESEKAKTTLKTMIQNREVTSLDLTLFALLSKDRLLRLIRHYILFD----- 276 Query: 436 DNPGMSELGLRYYQEDAVRAVEKAIVK---GQQ-EILLAMATGTGKTRTAIAMMFRLIQS 491 + RY Q + K + K G + L+ G+GK+ T + + L + Sbjct: 277 ---KKVKKVSRYQQFFGIEKTLKRVEKITDGIRAGGLIWHTQGSGKSLTMVMLTKLLKLT 333 Query: 492 QRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQS 551 +I+ + DR L EQ FE+T I L +K + + V Sbjct: 334 YTNAKIIVVTDRVDLDEQIHKTFENTDIKA---GRASSGSDLIEKLQSGIS-VITTLVHK 389 Query: 552 LVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD 611 K +++ + + ++VDE+HR D + Sbjct: 390 FEK--VRNSKTVINDNNVFVLVDESHRTQGGDLHNAMKKALPL----------------- 430 Query: 612 AVKIALTATPA------LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGV 665 A + T TP ++ FG ++RYT AV DG ++ +++ + Sbjct: 431 ACYLGFTGTPLLKKEKNKNSFLKFGGEIHRYTIDDAVKDGAVLPLLYEGRLVDQEV---- 486 Query: 666 YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDP---- 721 LS V + + ++D + D + A F + + ++ + Sbjct: 487 -LSPDGLVRKFNMIARELSDDAKRDLQHKWARFQKVASSEQRLELIALDINEHFKKTLKM 545 Query: 722 -TGSQKTLVFCVTNAHADMVVEELRAAFKKK----------------YPQLEHDAIIKIT 764 K + + A E + + A + Sbjct: 546 SNSGFKAMFATSSKYEAIKYHEIFEEYGDIRTAYVISSNEHEELDGGNKEYVAKAWQETI 605 Query: 765 GDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMK 824 + + ++ + F ++++ VD L TG D P + ++++ L Q Sbjct: 606 KNYGSEEEYLKYVKNEFIHGDEIDLLIVVDKLLTGFDAPRASTLYIDKQLKEHNLL-QAI 664 Query: 825 GRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKIT 884 R RL K I D + L+ T + + + L + D + Sbjct: 665 ARVNRLYD--GKDYGYIVDYRGLLGELDQALTNYASLD--GFDPEDLTGAVVDVRSEIAK 720 Query: 885 EADGRSFAEHSHE--QLVAKLQRIIGLATFNRDRSETID------------------KQV 924 + E + L+ + + + R + + + Sbjct: 721 AKTYYTHLEDLFSDVKFKDDLESYVVVLADIQKRDDFKEWLSHFSRAFKLGLSSEKIDDI 780 Query: 925 RRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIF 984 +E+ + F ++ + H + + L+ + + Sbjct: 781 LSENEIKLYKKKIKFYNELRKVVQLRYHETCDFGKYEEQMQKLLDTFVSAKEVNELTKLV 840 Query: 985 LDIDDEV-VSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVEL 1043 + E V+ + G L A ++V+ + PA I + + ++ Sbjct: 841 NIFETEFEEEVQRVEGKSAKADTILSAVSAVVKEKMESNPAFYKSIAQ-------QIEDV 893 Query: 1044 QEWFDRQHFEESSLRKAWKETRN 1066 ++ + E K+ ++ Sbjct: 894 INEYNAKRLSEEEKLAKAKQLKD 916 >UniRef50_B5J7A5 Type I site-specific deoxyribonuclease, HsdR family, putative n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J7A5_9RHOB Length = 1025 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 130/917 (14%), Positives = 286/917 (31%), Gaps = 123/917 (13%) Query: 262 SKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ---GFADYVLFVGLKPIAVVEAKRNNI 318 ++T+ A PE E + + D V++V + V+E KR+ + Sbjct: 88 TQTVWLIDWANPEANHFAVAEEVAVKAATSDGKTFGKRPDVVIYVNGIALGVLELKRSTV 147 Query: 319 DVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCY 378 V + + DN + + + K+++ + + Sbjct: 148 SVSEGIRQ------NLDNQKPMFIQRFFSTMQMIMAGNDTEGLRYSVIEAKEKYWLSWRE 201 Query: 379 STNGREYRATMKTKSGIWYRD-VRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADN 437 + K + + AL + LEM+ + Sbjct: 202 ENPAYREGIDPRDKRYLPDAPSAEGASPLDCALVRLCAKDRFLEMIHNFLVFD------- 254 Query: 438 PGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRI 497 + R+ Q VRA ++ I + ++ ++ G+GK+ T + + + ++ + R+ Sbjct: 255 -AGVKKTCRHNQYFGVRAAQEQIRR-REGGIIWHTQGSGKSLTMVWLAKWIRENVKDARV 312 Query: 498 LFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL 557 L + DR L EQ F+ + L + ++ + + + + Sbjct: 313 LVITDRTELDEQIEKVFKGV---NEDILRSKSGADLIARLNAEAPWLLCSLIHKFGGKEE 369 Query: 558 ---------QSDEPMPVARYD-----CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAY 603 + + + VDE HR D + A Sbjct: 370 ADGDVSGYIEEMSQALPKDFHAKGDLYVFVDECHRSQSGDLHK---------------AM 414 Query: 604 RRILDHFDAVKIALTATP-----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIIT 658 + IL +A+ I T TP ++++FG ++ Y + AV DG ++D + I Sbjct: 415 KAILP--NAMFIGFTGTPLLKEDKRTSLEVFGPYIHTYKFNEAVADGVVLDLRYEARDID 472 Query: 659 RNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNY 718 +N ++K + + +ND + + + + + ++ Sbjct: 473 QNITSQDKINK-----WFEIKTQGLNDLAKAQLKARWGTMQKVMSSQSRLEKIVADILLD 527 Query: 719 LDPTGSQK-----TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAI------------- 760 ++ K ++ + A E + Sbjct: 528 MELRDRLKSGHGNAMLVSSSIYQACKFYELFDKTDLAGKCAIVTSYKPTASDIKGEESGE 587 Query: 761 ------------IKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNI 808 K+ G D +A + Q ++ +++ VD L TG D PS + Sbjct: 588 GLTERLRQYEIYTKMLGGQDAEAFEKQAKKKFIDEPGQMKLLIVVDKLLTGFDAPSATYL 647 Query: 809 VFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVEL 868 +K++ L+ Q R RL +K I D D++ +LE+ + Sbjct: 648 YIDKKMQDHGLF-QAICRVNRL-DGDDKEYGYIIDYKDLFKSLETSIEDYTTEAFDGYDK 705 Query: 869 QTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGL-----ATFNRDRSETIDKQ 923 + + +TD D A + + V + A D+ + + Sbjct: 706 EDVAGLLTDRLKMARDRLDDALEAVRALCEPVETPRDTHAYLQFFCAKDTSDKDALKENE 765 Query: 924 VRRLDEL-CQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAP 982 +RL + + A+ + E G +S + + EK++ ++ + Sbjct: 766 PKRLALYRLVASLVRAYAETANEMGEVG--YSDSEMAAIKADVDHFEKVRNEVKLASGDY 823 Query: 983 IFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSL------VQRSPNAQPALQAVINRPRDLT 1036 I L + + + + + FD + V+R +A AL + I + ++ Sbjct: 824 IDLKMYEPAMRHLIDTYIRAEESEIISNFDDMSLIQLIVERGVDAVDALPSGIRKNKEAV 883 Query: 1037 RKGLVELQEWF------DRQHFEESS---LRKAWKETRNEDIA-----ARLIGHIRRAAV 1082 + + + E L + R E I A+++ ++A Sbjct: 884 AETIENNVRKLIIDETPINPKYYEKMSDLLDALIVQRRTEVIDYEAYLAKIVELAKQAKR 943 Query: 1083 GDALKPFEERVDHALTR 1099 + + V+ R Sbjct: 944 PEPTTSYPASVNSPAKR 960 >UniRef50_Q30XD1 DEAD/DEAH box helicase-like n=10 Tax=Proteobacteria RepID=Q30XD1_DESDG Length = 1085 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 134/908 (14%), Positives = 265/908 (29%), Gaps = 112/908 (12%) Query: 167 EVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYH 226 + A Q+K ++E + + Q A+ + E + + Q E+ K Sbjct: 2 QASAHQEKHFQQYIIDRLVEQGWKLGDTQHYDNERAMYPEDLESWIKTSGQQEKWDKLER 61 Query: 227 KEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEW-- 284 L + + LR+ G+ L A PE N A+ E Sbjct: 62 LNGAKTLEVLMARLDKALEKQGTMQVLRQ-GFSIAGCGLIEMTEAAPEDKRNAAVIERYQ 120 Query: 285 -------PTGKDETGNQGFADYVLFVGLKPIAVVEAKRN-NIDVPARLNESYRYSKCF-D 335 P K + D VLF+ P+A VE K + A +++ + Sbjct: 121 ANILRVVPELKYHPAREFAIDLVLFINGLPVATVELKTDFTQSAEAAMDQYRNDRLPYDP 180 Query: 336 NGFLRETLLEHYSPDEVHEAVPEYETSW-QDTSGKQRFKIPFCYSTNGREYRATMKTKSG 394 RE LL VH A+ + E G+ F +PF G Sbjct: 181 KTKRREPLLTFKRGAVVHFAMSDSEIMMATKLDGESTFFLPFNKGRKDESGAVHAGNPPG 240 Query: 395 IWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGM-----SELGLRYYQ 449 D ++ +P+ L + S + + D G + + R++Q Sbjct: 241 EIKADGTQEYPVAYFWEAVCQPDSWLRIFHSFVYVETKDVVDIQGNWSKKETLIFPRFHQ 300 Query: 450 EDAVRAVE-KAIVKGQQEILLA-MATGTGKTRTAIAMMFRLIQSQR------FKRILFLV 501 AV + A G L + G+GKT T L++ + F ++ + Sbjct: 301 WTAVNQILADARQNGAGMTYLCDHSAGSGKTSTISWTAHDLVKLREDNGDAVFNSVIIVT 360 Query: 502 DRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE------DSTKIHVATVQSLVKR 555 DR L Q A + +I K K + T I V T+Q+ Sbjct: 361 DRNVLDGQLQDAVKQIDHQFGVIAAIDRQKSSKSKSKQLSEALLSGTPIVVVTIQTFPYA 420 Query: 556 TLQSD-EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYR--RILDHF-- 610 + + +++DEAH S +S +L+ Sbjct: 421 MEAIITDKALKGKNFAVIIDEAHNSQTGATAAKLQAALGMSGQGKMSTMTVDELLEQLQK 480 Query: 611 ------DAVKIALTATPALHTVQIFGEP---------------VYRYTYRTAVIDGFLID 649 + A T TP T+ +FG P + YT R A+ + F++D Sbjct: 481 SRARPKNISYFAFTGTPKHSTLMLFGRPTDPSQPASDDNPPQAFHLYTMRQAIEEKFILD 540 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 + ++V + + + + + Sbjct: 541 VLKGYVPYKTAFNLSKQIEDSKRVSGKAAKRALAQWMSLHPTNVTQK-----------VQ 589 Query: 710 AVCNELTNYLDPT--GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD- 766 + T + G K +V + A A + ++ +++ +G Sbjct: 590 FIVEHFTKNVAHRLDGKAKAMVVTSSRAAAIRYKKAFDRYIEQHSEYGFIHSLVAFSGKM 649 Query: 767 -----------------------------ADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 + Q + F++ +++ D Sbjct: 650 TGKQVMHQDDGEFKDDVFIVDENEEFTEQSMNPDIHGQDLRFAFDRPEY-RVMLVADKFQ 708 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV--D 855 TG D P + + +K+ + + Q R R P K I D V+ + Sbjct: 709 TGFDQPKLVAMYVDKKIANHVEIVQTFSRLNRTAP--GKDEVFIIDFVNDPENVRQAFTT 766 Query: 856 TMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKL-----QRIIGLA 910 + + +L + + + + + + + + + + + + L Sbjct: 767 YDKGAHIDEVQDLNVVYEIKERLDEHGLYDEKDLAAFKEARFKTIRDITHTKSPQHKALY 826 Query: 911 TFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEK 970 + + +++ L + F ++ E G + ++ I L Sbjct: 827 AATAGATALYNDKMKMLRD-GMATWEAAFEKARAKGDEAGMKSADHHQDEYAEQIKALIG 885 Query: 971 LKTDINNL 978 K+D+ Sbjct: 886 FKSDLGRF 893 >UniRef50_Q4HQY2 Type I restriction enzyme R protein (HsdR) n=2 Tax=Campylobacterales RepID=Q4HQY2_CAMUP Length = 1006 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 139/1035 (13%), Positives = 291/1035 (28%), Gaps = 160/1035 (15%) Query: 142 LYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLA 201 L T+ + R+ + Q+E + +++ + L E + + Sbjct: 7 LAQNTTSTIAVEWTPSKRQNSSYQSEAQLEKELIATLQAQGYEYAPITNEKSLE-----S 61 Query: 202 ALEAQLAEKNAELAKQTEQER--KAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQ 259 L +L E N+ TE R +++++ + E+ I R G Sbjct: 62 NLRTKLEELNSTTLSDTEWRRFFAQVLSRANASIVEKSVLIQED----YIQPLERDNG-- 115 Query: 260 ADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNID 319 + A + I ++ + D + V P+ +E KR + Sbjct: 116 -SIINFKLIDKADIHKNSLQVINQYEATTPTRSH--RYDVTILVNGLPLVHIELKRRGVS 172 Query: 320 VPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYS 379 + N+ RY + Y + +D K + I + Sbjct: 173 LKEAFNQINRYGRESFFSGNGLFEFVQIFVISNGTQSKYYSNTTRDFHIKTKQGIKTTKT 232 Query: 380 TNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPG 439 +N E+ + + D+ D + LL++L Sbjct: 233 SNTFEFTSYFSDEKNTIIDDLIDFA------KTFFARHTLLQILCHYCVLDVDR------ 280 Query: 440 MSELGLRYYQEDAVRAVEKAIV------------KGQQEILLAMATGTGKTRTAIAMMFR 487 L LR YQ A + + I + + + TG+GKT T+ Sbjct: 281 -KLLVLRPYQIAACEKILQQIAISYHNKFYEKSSEQKSGGYIWHTTGSGKTLTSFKTAQL 339 Query: 488 LIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVA 547 + ++LF+VDR+ L Q + ++ + T + + + KI + Sbjct: 340 ASKIPEIAKVLFVVDRKDLDYQTMREYDRFQKGAATGSKNTKELQSRLNSTDKNHKIIIT 399 Query: 548 TVQSLVKRTLQ-SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRI 606 T+Q L + Q + +++ ++ DE HR ++ + + Sbjct: 400 TIQKLSRFIAQAEKDHTIFSKHIVMIFDECHRSQFGQMQKDITKAFKKLY---------- 449 Query: 607 LDHFDAVKIALTATPAL--------HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIIT 658 T TP T ++FGE ++RYT A+ D ++ T Sbjct: 450 -------LFGFTGTPIFAANALGYETTQRVFGECLHRYTIIHAIRDHNVLPFRVDYHTTT 502 Query: 659 RNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNY 718 ++ + ++ + Sbjct: 503 KDTTQITDEILLNPTRIEYITHYILEHFTTHTKRN------------------AKSYNLN 544 Query: 719 LDPTGSQKTLVFCVTNAHADMVVEEL---------------------------------- 744 T L + A EE Sbjct: 545 GKHTLGFNALFATQSIPMAMRYYEEFKRQQNNLPESKALKIGIIYSYAPNDEPEEENSED 604 Query: 745 --------RAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLL 796 R K AD + R + ++ + V++ Sbjct: 605 TTALPKSQRDFLDAAISDYNAVFKCKFDSSADNFQNYYKDFSQRLRDKE-LDLAIVVNMF 663 Query: 797 TTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDT 856 TG D ++ + + +R L Q R R+ V K+ I D+ + Sbjct: 664 LTGFDATTLNTLYVDKSLRYHGLL-QAYSRTNRILNSV-KSFGNIITFRDLQKNTDDALA 721 Query: 857 MRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDR 916 + + + E T D + + +L +L L +F + Sbjct: 722 LFSDENAKGIVFLRSLEEYLQGYT------DEKGQKHKGYNELTKELTDKFPLESFRQAT 775 Query: 917 SETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDIN 976 +T DK+ L + N P + + +I+ E+L+ D + Sbjct: 776 LKTSDKKHF-LALFGELLKLRNILEIFDNF--SDPLNERDKQDYQSHYISTYEELRKDKD 832 Query: 977 NLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLT 1036 + ++ E+++ + + + LE + + +++ L Sbjct: 833 DKESNLDEVEFQVELLAQVEV-----SIEYILELIAKYHKDQATNYEPILKLLDSSLSLR 887 Query: 1037 RKGLVELQEWFDRQHFEESSLRK---AWKETRNEDIAARLIG-----------HIRRAAV 1082 K EL F +S++ K + +T + +I ++ + Sbjct: 888 SK--KELFLRFIDSLHTQSNVAKDFSTYIKTHKNNALQDIINALNLDPKKTKEFMQDSFE 945 Query: 1083 GDALKPFEERVDHAL 1097 L+ + D L Sbjct: 946 RGELRDYGRAFDEIL 960 >UniRef50_D1YNY8 Type I restriction enzyme HsdR protein N-terminal domain protein n=1 Tax=Veillonella parvula ATCC 17745 RepID=D1YNY8_9FIRM Length = 1029 Score = 362 bits (928), Expect = 5e-98, Method: Composition-based stats. Identities = 149/1054 (14%), Positives = 309/1054 (29%), Gaps = 136/1054 (12%) Query: 167 EVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYH 226 E + L ++G + + L A + + ++ K Y Sbjct: 8 EKRFEDDIESFLCTAGGYVKGNPKVFNQELALDTDTLFAFIKHSQPKKWERYT---KLYG 64 Query: 227 KEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEW-- 284 Q +KR + E + L+ G+Q T R A A++ Sbjct: 65 DSCEQQFLKRFNDSVE--HKGLLSVLRH--GFQDRGITFRVVYWKPETSMNETARAQYEA 120 Query: 285 ------PTGKDETGNQGFADYVLFVGLKPIAVVEAKR--NNIDVPARLNESYRYSKCFDN 336 N D VLF+ P+ +E K + +++ FD Sbjct: 121 NIFHCTRQLYYSVSNNNSVDIVLFLNGIPVVSMELKCQFTGQNATNAISQYK-----FDR 175 Query: 337 GFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIW 396 + + +G + +PF +NG A +G Sbjct: 176 SNKDQIFKFNRRVLVHFAVDLTQVHMTTKLNGSSTYFLPFNQGSNG----AGNVGSAGNP 231 Query: 397 YRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQ--NQWFADNPGMSELGLRYYQEDAVR 454 D DT + +++ + + LLE+L + + R++Q D V Sbjct: 232 NSDTYDTSYLWESV---LQRDRLLEILQKYMHLSVVKDSAGNITDEILIFPRFHQLDVVT 288 Query: 455 AVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLIQSQR------FKRILFLVDRRSL 506 + + + L+ + G+GK+ + + RL F+ + + DR+ L Sbjct: 289 KLLDHVKENGAGHNYLIQHSAGSGKSNSIAWLAHRLSGLHDRDDKKIFRSTIIVTDRKVL 348 Query: 507 GEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVA 566 Q + + E ST I + T+Q + + Sbjct: 349 DSQLQNTVSQFDHTPGVIQRVDKTSKQLKEAIESSTPIIITTLQKFPVIYEEVKAQ---S 405 Query: 567 RYDCIVVDEAHRGYILDKEQTEGELQFRSQ-------LDYVSAYRRILD----------- 608 ++VDEAH + + ++ LD Sbjct: 406 CNFAVIVDEAHSSQTGSTARKLKQALANTEKALQEYADWAYEDEENALDEEDKLVKELVA 465 Query: 609 ---HFDAVKIALTATPALHTVQIFG--------EPVYRYTYRTAVIDGFLIDQDPPIQII 657 H + A TATP T+Q+FG P + Y+ + A+ +GF++D Sbjct: 466 QGQHDNLSFFAFTATPKAKTLQLFGTRDEMGKYHPFHIYSMQQAIDEGFILDVLKNYMTY 525 Query: 658 TRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTN 717 + + +++ + + + +++ F +++ Sbjct: 526 NTYYKIASLVDVDIELDSAAGMKAIRKFQTLHPHNITQKT---AVMLRHFMDITRHKI-- 580 Query: 718 YLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDAR-KVQT 776 G K +V + HA V+E R ++ + ++ +G+ D + R + Sbjct: 581 ----GGRAKAMVVTPSRLHAVRYVQEFRRQIEQMERPDL-EVLVAFSGEIDDNGRTYTEE 635 Query: 777 MITRFNKERLPN--------------IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 + + +++ + TG D P + + +K+ S + Q Sbjct: 636 SLNIDKEGNHIKEKALPGTFHSDEYGMLIVAEKYQTGFDEPLLHTMFVDKKL-SGVKAVQ 694 Query: 823 MKGRATRLCPEVNKTSFKIFDCVDIYSTL--ESVDTMRPVVVRPKVELQTLVNEITDSET 880 R R K + D V+ + + + + + TL + + + Sbjct: 695 TLSRLNRTM--KGKQDTFVLDFVNSEDDILSSFAPFYQETKLDKETDPNTLYDVKSTLDK 752 Query: 881 YKITEADGRSFAEHSHEQLVAK---------------LQRIIGLATFNRDRSETIDKQVR 925 + + + Q + ++R L +RD + + Sbjct: 753 FNVYDVHDIEQFGELFYQSQNQTMGDLGKLQSYIMPAIKRFESLEEADRDIFKGTLQHFN 812 Query: 926 RLDEL------CQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGF-IARLEKLKTDINNL 978 RL D F+ +A L + P + + + K + Sbjct: 813 RLYSFITQVCRLFDKELHTFSIYAKFLAIQLPKEHQDHVDLDDKIMLEYYRLEKGSHGPI 872 Query: 979 NDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDS-LVQRSPNAQPALQAVIN------R 1031 + + V T + +E F+ + + + Sbjct: 873 DLVSQENGLQPITGKVGRKNSLITTINEIIEEFNKRYGTEFTEMDKVILQIEQDIAKDPK 932 Query: 1032 PRDLTRKG-LVELQEWFDRQHFE--ESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKP 1088 RD R + FD++ R + + +L IR A +G+A+ Sbjct: 933 WRDYIRNNGYKTFKILFDQEFISIVAKRFRANEEFLKVLLKDEKLFKDIRDA-LGNAIYS 991 Query: 1089 FEER--VDHALTRIKGENDWSSEQLSWLDRLAQA 1120 E ++HAL + EQ L +A Sbjct: 992 RVEHNVMNHALPEKMMHGMFELEQPEMLPLVADK 1025 >UniRef50_C5C4M4 Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C4M4_BEUC1 Length = 1097 Score = 362 bits (928), Expect = 6e-98, Method: Composition-based stats. Identities = 154/1051 (14%), Positives = 292/1051 (27%), Gaps = 119/1051 (11%) Query: 152 QQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKN 211 ++L + + ++ + + +AI E + A + Sbjct: 14 EELAEHGWTPREGKSIAPGAPAVVD--DEGLAIAERETWADLLIPSRLKRAARKVNPDVP 71 Query: 212 AELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGA 271 Q + KR + E RF L G + + T+R Sbjct: 72 PAYLDQALATLTTPQSQDAIAENKRLHDAVVEGFRF---TYLDDDGQE-RTPTIRLVDA- 126 Query: 272 RPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNI---DVPARLNESY 328 +P N+ +A + D VL++ P+ ++E K DV A + Sbjct: 127 --DPDRNEWLAVNQVTVVSGDVERRFDVVLYLNGMPVGIIELKNAGTPHADVAAAHAQLT 184 Query: 329 RYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNG--REYR 386 Y + F L P + ST + R Sbjct: 185 TYVRELPLAFRFAVLTVASDGVTAKYGTPFTPLNHYSPWNVDDDGRVVGRSTAPGPEDSR 244 Query: 387 ATMKTKSGIWYRDVRDTRN----MSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSE 442 AT + I D + + E L++L + + G+S+ Sbjct: 245 ATDGITADIPEGDAATGDAGALALEVLIAGLFNTERFLQLLRGYVAFD----SGDGGLSK 300 Query: 443 LGLRYYQEDAVRA----VEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQR--FKR 496 + +Q AV A+ + ++ G+GK+ ++++ + Sbjct: 301 RIAKPHQYFAVSQAIATTIHAVETNGKAGVVWHTQGSGKSMEMELYANQVMRHPKLHNPT 360 Query: 497 ILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED-STKIHVATVQSLVKR 555 I+ + DR L Q F + + + I L D+ + I+ T+Q Sbjct: 361 IVVVTDRTELDGQLYETFNRSELLPEKPRQIVRRNELRDELGSRVTGGIYFTTLQKFGLS 420 Query: 556 TLQSDE-----PMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF 610 + D + ++VDEAHR + D Y + L Sbjct: 421 KEEKDAGLAHPRLSDRPNIVVIVDEAHRSHYDDL------------DGYAWHLKNALP-- 466 Query: 611 DAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVY 666 +A IA T TP +T ++FG+ ++ Y AV DG + +++ Sbjct: 467 NATLIAFTGTPISFADRNTREVFGDVIHTYDLTRAVEDGATVPVYFESRLVKVGFS--GD 524 Query: 667 LSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTG--- 723 L+ + +++T D + VA N PA + +L + + Sbjct: 525 LTDDQINASADEVTVGLDETERDRIEKSVAVVNAIYGAPARLEKLATDLVAHWEARRTAM 584 Query: 724 ---------------SQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDAD 768 K LV C T A + E++ A + H +K+ Sbjct: 585 AELVRSVDVDGGDVAPGKALVVCATRDIAARLYEQIVAIRPGWHSADIHAGKVKVVYSGS 644 Query: 769 KDAR-----------KVQTMITRFNKE-RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRS 816 + + + R IV+ D++ TG D P + + R +R Sbjct: 645 ATDQPPISDHVRRDSENAVIKKRLKDPTDELEIVIVKDMMLTGYDSPPLHTLYLDRPIRG 704 Query: 817 RILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEIT 876 L Q R R K + + I L + + + V++ Sbjct: 705 -ALLMQTLARVNRTFR--GKNAGLLVAYAPIAEHLTAALAEYTDRDQEAKPVGKTVDDAV 761 Query: 877 DSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSE-----TIDKQVRRLDELC 931 D I E L + A + T + D + Sbjct: 762 DVARQLIEELRAVLVGFDWRADLRRRQSSGDKAAGLRTILAAVNWLRTPRRGDDATDGVT 821 Query: 932 QDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEV 991 + G R R + + F + ++ I D+V Sbjct: 822 PSSTFRTLAGQLGRARAISGPEALADVDNEIRFYEEVRIWIGKLDAEERQARGEPIPDDV 881 Query: 992 VSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWF--DR 1049 + L + S A L R L + Sbjct: 882 QRM-------------LNELMAAAVESGEVLDIYGAAGLEAPRLDRLDTDYLTRAQSAEN 928 Query: 1050 QHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSE 1109 +L+ R +R+ + F R+ + + N S+E Sbjct: 929 PQLTIEALQNLI--ARESQTVTH-GNLVRQ-------RVFSVRLSEVMAKYTNSNLTSAE 978 Query: 1110 QLSWLDRLAQALKEKVVLDDDVFKTGNFHRR 1140 ++ L +A+ + + D Sbjct: 979 VIAALIEVARDVSAEG--DRGASFDPPLSTD 1007 >UniRef50_UPI000197676D type I site-specific deoxyribonuclease HsdR family subfamily protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI000197676D Length = 970 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 146/997 (14%), Positives = 287/997 (28%), Gaps = 154/997 (15%) Query: 194 AQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQ- 252 A LA QL + NA + + E I E ++ L D Sbjct: 28 ANYDDVLANFREQLTKFNARKLVEAKGAAALSDAEFGRVMIHMDDKSVYESAKILRDKYV 87 Query: 253 LRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVE 312 L + S R V + KD+ D + + P+ VE Sbjct: 88 LALDNGKTVYLDFFSSDTDRNIYQVTHQVTMDKAHKDDVAYTNRYDVTILINGLPVVQVE 147 Query: 313 AKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRF 372 KR +++ +N+ RY K G R L S + Sbjct: 148 LKRPGVEINEAINQINRYRKFSFKGLFRYLQLFVVSNSVQTKYFCNENEM---------- 197 Query: 373 KIPFCYSTNGREYRATMKTKSGIWYRDVRDTRN-MSKALPEWHRPEELLEMLGSEPQKQN 431 +G Y +K+ W D N + + ++ R + EML Sbjct: 198 --------DGGSYNPILKSLVFFWTDDKNKRINKLDEFTADFLRRSTITEMLDKY----- 244 Query: 432 QWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQS 491 + +R YQ AV+A ++ +++ Q + TG+GKT T+ + L Sbjct: 245 -MVIKTTEPVLMVMRPYQIYAVKAAKRRVLESNQNGYVFACTGSGKTLTSFKLAQLLRDE 303 Query: 492 QRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQS 551 R +++FL+DR+ L +Q + + + L + + + V T+Q Sbjct: 304 PRVDKVIFLIDRKDLDDQTVDEYNSF--EKGCVDGSDSTAVLVKQLGQADRGLIVTTIQK 361 Query: 552 LVKRTL-QSDEPMPVARYD---CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRIL 607 + + E + + D ++DE HR Sbjct: 362 MANAVKGKRYERLMDSYRDKKVVFIIDECHRSQFGKMHGDIERHFR-------------- 407 Query: 608 DHFDAVKIALTATP---------ALHTVQIF------GEPVYRYTYRTAVIDGFLIDQDP 652 +A I T TP T +F ++RY + A+ DG ++ Sbjct: 408 ---NANYIGFTGTPIFEANKGKDGRTTADVFYSGSKLDSCLHRYMIKDAIADGNVLRFSV 464 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC 712 Q R + G ER+ L D + R V Sbjct: 465 EYQ---RTIFAKQMSASGIDPERLGDPEYCRRHNL---------DLDALYHDDERIRVVA 512 Query: 713 NELTNYLDP--TGSQK----TLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD 766 +++ + K L + + R + + + T Sbjct: 513 SDIFEHHKQHVHPQGKDVYTALFAVDSIQTLGKYYDAFRELNEARPDDERYRVAAIFTYQ 572 Query: 767 ADKD---------------------------------ARKVQTMITRFNKERLP--NIVV 791 A++D + + R ++ LP +I++ Sbjct: 573 ANEDMDEGGDEHSQELLARCMADYNGMFGTAFDLDSFDAYRKDIAKRMKQKELPQVDILL 632 Query: 792 TVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTL 851 V+++ TG D + + + + L Q R R+ +V K +I DI Sbjct: 633 VVNMMLTGFDAKPLNTLYLDKNLIWHTL-VQAYSRTNRV-DKVTKQFGQIVSYRDIKKAQ 690 Query: 852 ESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLAT 911 + + P L + + E R A + + + I Sbjct: 691 DDALRLFSGDGDPNEYLLESYEYYVNQWMNQ--EVQLRKAAPTVDDAGRLQSEEDIRKFV 748 Query: 912 FNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKL 971 ++ + V + E+ + + + K+ Sbjct: 749 VAFRAMSGTLATLKTFGKFDWADLSVVLDD------EEYEGYKSWYLYYHDEARKKDPKV 802 Query: 972 KTDINNLNDAPIFLDIDDEVVSV--------KSLYGDYDTPQDFLEAFDSLVQRSPNAQP 1023 ++ D + V+ + + + + +D ++ ++RS N Sbjct: 803 PVPVDVDFDVELVRTDRINVMYILSLLKSAHEGGKSEEERARD-IDLVMREIERSDND-- 859 Query: 1024 ALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVG 1083 AL+A + R +L + D +++A+++ E + A + + Sbjct: 860 ALRAKKDIMEAFIRTRFYDLPDGID--------VQQAYEQFERESLQAEIESFAYDNGIE 911 Query: 1084 DALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQA 1120 + + + S E + RLA Sbjct: 912 ------AQDILDVFSEYTFGGSISEEGIR--KRLASY 940 >UniRef50_A5WF29 Type III restriction enzyme, res subunit n=5 Tax=Gammaproteobacteria RepID=A5WF29_PSYWF Length = 1112 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 160/959 (16%), Positives = 292/959 (30%), Gaps = 155/959 (16%) Query: 279 KAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNID-VPARLNESYRYSKCFDNG 337 + TG ++ + D VLFV P+ +E K V + R D Sbjct: 147 HKEVDEATGNTKSAKRHRIDLVLFVNGLPVVTMELKSEFKQAVENAKLQYKRDRLPVDPA 206 Query: 338 FLR-ETLLEHYSPDEVHEAVPEYETSWQD-TSGKQRFKIPFCYSTNGREYRATMKTKSGI 395 + E LL VH AV +Y+ +G F +PF T R Sbjct: 207 SKKPEPLLSFKRGALVHFAVSQYDVFMTTKLAGDDTFFLPFNKGT-----RDGGAGNDIP 261 Query: 396 WYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFAD-----NPGMSELGLRYYQE 450 + T + + + LL +LG Q + D + + RY+Q Sbjct: 262 QDHNRYATDYLWNEV---LSTDNLLNILGRFMHLQIEDKEDALGRRTKKETMIFPRYHQW 318 Query: 451 DAVRAVEKAIVKGQQ-----------------EILLAMATGTGKTRTAIAMMFRLIQSQR 493 D V + + VK + L+ + G+GK+ + +L Sbjct: 319 DVVTNLVEDAVKQDKVRHAKQDNPNLNKKVENRYLIQHSAGSGKSNSIAWTAHQLSTLYN 378 Query: 494 ------FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE------DS 541 F ++ + DR L +Q I +G K + S Sbjct: 379 DAGTKLFDSVIVVTDRTVLDDQLQDTIYQFEHADGVVGRINRKEGEGSKSEKLAEALMSS 438 Query: 542 TKIHVATVQSLVKRTLQSDEP-MPVARYDCIVVDEAHRGYILDKEQTEGELQ-------- 592 I + T+Q+ ++ + R I+ DEAH + E+ Sbjct: 439 QPIIIVTIQTFPYVLKAIEDSSVLKERRYAIIADEAHSSQSGTTARKLKEVLIASPTASD 498 Query: 593 -----FRSQLDYVSAYRRILDH--------FDAVKIALTATPALHTVQIFGEP------- 632 F +D + +LD + A TATP T+++FG Sbjct: 499 ELRDNFEEHVDRGLSAEDMLDATITARRGSDNLSYYAFTATPKSKTLELFGRLPNPNLPA 558 Query: 633 --------VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN 684 + Y+ R A+ +GF++D Q L+K ++V+ + ++ Sbjct: 559 SKDNKPEAYHVYSMRQAIEEGFILDVLKNYTSYKVVYQLNQKLAKDQEVDAKRAKIKLNQ 618 Query: 685 DTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL 744 D+ ++ + ++I FN + G K +V + A Sbjct: 619 WV--RLHDYNISQKVK-IIIEHFNENI------KGLLGGQAKAMVVTGSRKEAVRYKLAF 669 Query: 745 RAA--------------------FKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKE 784 F + P T K + M F+ + Sbjct: 670 DKYVLEHGYKDINAMVAFSGEVEFNESDPDSSGLLGESFTESNMNPDLKGRDMRKAFDSD 729 Query: 785 RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDC 844 +++ + TG D P +C + +K+ + Q R R+ P +T + D Sbjct: 730 DY-QVMLVANKFQTGFDQPKLCAMYVDKKLAG-VDCVQTLSRLNRIYPGKKETGTFVLDF 787 Query: 845 V----DIYSTLESVDTMRPVVVRPKVELQ-TLVNEITDSETYKITEADGRSFAEHSHEQL 899 DI + + + + L +I S+ K E D + A +S + Sbjct: 788 FNDPEDILAAFQPYYETAELADVTDPDKVFDLFEKIRASDIIKWHEVDNLADAFYSKNKS 847 Query: 900 VAKLQRIIGLATFN-RDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVF 958 A + I A R + + + V+R + + N + E Sbjct: 848 NAAISNICKPAVERWRHQYQRASEDVKRTKAILERTKATNDAVLIG----NADNDFKEAK 903 Query: 959 NKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTP---QDF-------- 1007 + + L + +D DD + SLY + P +DF Sbjct: 904 KAKDELVLFKKDLGSFARFYEFMSQIVDYDDRDLEKLSLYARHLLPLLREDFNLDDEIDL 963 Query: 1008 ------------LEAFDSLVQRSPNAQ---PALQAVINRPRDLTRKGLVELQEWFDR--- 1049 L+ D +Q PA P+D L E+ + Sbjct: 964 SNIEMTHYRVSKLKQQDLKLQEHSEDNQLEPASGLGTATPKDKKDDYLSEIIRQLNDIFA 1023 Query: 1050 -QHFEESSLRKAWKETRNEDIAARLI-GHIRRAAVGDA-LKPFEERVDHALTRIKGEND 1105 + F E L + R++ + ++ +R A L F +D A+ + ++ Sbjct: 1024 GEGFTEDDLVNYAQTIRDKMAESEIVMSQVRNNTKDQAMLGDFPIAIDDAMIDSREAHE 1082 >UniRef50_C0N6E9 Type III restriction enzyme, res subunit family n=2 Tax=Bacteria RepID=C0N6E9_9GAMM Length = 1026 Score = 361 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 129/865 (14%), Positives = 261/865 (30%), Gaps = 88/865 (10%) Query: 163 QTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQER 222 +T +E++ ++ L G + +A L + A + Sbjct: 6 KTTSELDFEEAIEAYLVGEAGYDIAPNTQFDATLALDATTLLDFV---KATQEDTYNALK 62 Query: 223 KAYHKEITDQAIKRTLNLSEEESRFLIDAQL---RKAGWQADSKTLRFSKGARPEPGVNK 279 +Y +I +KR SE + R L+D + G R + PE Sbjct: 63 ASYGTQIDSALVKRIA--SECDQRGLLDVLRNGVKDRGQLIRLAFFRPASTLNPETEKRY 120 Query: 280 AIA---EWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDN 336 + + D +L + PIA VE K +N ++ K Sbjct: 121 QQNKLTVMRQVHYDLASNNSIDMMLSLNGLPIATVELKNAFTGQKT-INAIKQFIKDRKP 179 Query: 337 GFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIW 396 + + +G+ F +PF NG + + Sbjct: 180 TAKTPLIQFKKRALVHFAVDTDEVFMTTRLAGEHTFFLPFNKGNNGGKGNPDHHNHVTGY 239 Query: 397 YRDVRDTRNMSKALPEWHRPEELLEM---LGSEPQKQNQWFADNPGMSELGLRYYQEDAV 453 T + + + + ++L L +E ++ + + RY+Q A Sbjct: 240 -----KTGYLWEEVWQRDSWLDILHRFVHLQTEEKRDPDTGKKTRKETLIFPRYHQLAAT 294 Query: 454 RAVEK--AIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQR------FKRILFLVDRRS 505 RA+ K A+ Q L+ + G+GKT T +L F ++ + DRR+ Sbjct: 295 RALLKQTALDSAGQNYLIQHSAGSGKTNTISWTAHQLASLHGDDNKPVFNTVVVISDRRN 354 Query: 506 LGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP--EDSTKIHVATVQSLVKRTLQSDEPM 563 L +Q + I + K TD KI + T+Q + E Sbjct: 355 LDKQLQDSIYQIEHKQGVVEKIDEDKSSTDLADALNAGAKIVITTLQKF-SFLMGKVEDF 413 Query: 564 PVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLD----------------------YVS 601 R+ +++DEAH + + + + + Sbjct: 414 SDRRF-AVIIDEAHSSQGGRSASSLRVVLGKHDDEQVLAAAEVEDDKQPEQKTTEDLVLE 472 Query: 602 AYRRILDHFDAVKIALTATPALHTVQIFG--------EPVYRYTYRTAVIDGFLIDQDPP 653 ++ + A TATP T+++FG P + Y+ R A+ + F++D Sbjct: 473 EIKKKGKQPNLSFYAFTATPKAKTLEMFGVDDGSGIPRPFHLYSMRQAIEERFILDVLKH 532 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCN 713 + + +V+ + + + ++I + R Sbjct: 533 YTTYKTYYELSKKVDDDPEVDEKKAKRAIARFMSLHPHNLAQKT---EIMIEHYRRFTSK 589 Query: 714 ELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAF-KKKYPQLEHDAIIKITGDADKDAR 772 ++ G K +V + HA +E K Y ++ T D D Sbjct: 590 KI------AGKAKAMVVTRSRLHAVRYKQEFDKYIHDKGYDDVKTLVAFSGTVDDPDDDT 643 Query: 773 --KVQTMITRFNKERLPN--------IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 + + F ++ LP I++ + TG D P + + + ++ Q Sbjct: 644 QSYTEAGMNGFGEKELPERFASREYHILIVAEKYQTGFDQPLLHTMFVDKPLKDL-KAVQ 702 Query: 823 MKGRATRLCPEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVELQTLVNEITDSET 880 R R KT + D + ++ + + + L + Sbjct: 703 TLSRLNR--SNSGKTDTFVLDFANEMEEIKESFKPYFQETEIEETTDPNQLYTLQQKIDG 760 Query: 881 YKITEADGRSFAEHSHEQLV-AKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNF 939 + I ++ + + V + +R G D + K R D N Sbjct: 761 FHIIRSEDVESFAAVYFKPVTNQTKRDHGQLNKWVDPAVQRYKDEFRDSTSSVDEERYNE 820 Query: 940 NGFASRLREKGPHWSAEVFNKLPGF 964 +G + + +++ + Sbjct: 821 DGEEFKSSLQSFVRLYSFLSQIIDW 845 >UniRef50_C6VT73 Type I site-specific deoxyribonuclease, HsdR family n=3 Tax=Bacteria RepID=C6VT73_DYAFD Length = 974 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 126/1045 (12%), Positives = 305/1045 (29%), Gaps = 163/1045 (15%) Query: 168 VEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHK 227 + +Q L G + ++ L++QL + N+ + E ++ Sbjct: 2 AKQPEQILEEQLVDQLQKLGYAFVAIKDEKQLISNLKSQLEKHNSIVFSDKEFDKVLNIL 61 Query: 228 EITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTG 287 K ++ +R G ++L F + N+ Sbjct: 62 NKGSVFEK-------AKTLREKQHIVRDNG-----ESLYFEFLNQEHWCQNQFQVTQQVS 109 Query: 288 KDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHY 347 E + D L + P+ +E KR +++ N+ RY + + Sbjct: 110 M-EGVYKNRYDVTLLINGLPLVQIELKRRGLELKEAFNQINRYQR-----HSFGVNSALF 163 Query: 348 SPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMS 407 ++ T + + Q FK + + + +G Sbjct: 164 QYVQIFVISNGVNTKYYANNKNQTFKQ--TFYWSDVANKRLTNILNGF------------ 209 Query: 408 KALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKG---- 463 ++ P + +M+ + LR YQ AV A+ + + Sbjct: 210 --TSQFLEPCHISKMICKYI------VVSETNKVLMVLRPYQFYAVEALVERVKNSGIKG 261 Query: 464 -QQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD 522 + + TG+GKT T+ L+ + K+++F+VDR+ L Q F + Sbjct: 262 PHKNGYIWHTTGSGKTLTSFKASQILMHLPQVKKVVFVVDRKDLDYQTNKEFNIF--SKG 319 Query: 523 TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDE----PMPVARYDCIVVDEAHR 578 + + D + L +F + TK+ V T+Q L + + DE HR Sbjct: 320 SVDGTDDTRALVKQFAD-DTKLIVTTIQKLNSAIGKKQYLDQMARMKDERIIFIFDECHR 378 Query: 579 GYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV-KIALTATP------------ALHT 625 + + RI F+ + T TP T Sbjct: 379 SQFGE------------------THTRIKSFFNNIQLFGFTGTPIFADNAVKNELGKRTT 420 Query: 626 VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND 685 ++FGE +++Y A+ D ++ + E E + + + Sbjct: 421 TELFGECLHKYVITDAIRDENVLKFSVEYVGRYKQKDESRTNIDIEVEDIDTKELMDSPV 480 Query: 686 TLEDDQDFEVADFNRGLVIPAFNRAV----CNELTNYLDPTGSQK---------TLVFCV 732 LE D+ +A+ R F L Y + ++K +F Sbjct: 481 RLEKIADYILANHARKTHSREFTGMFCVSSVETLIRYYEILQAKKLAGQHNLKIATIFSY 540 Query: 733 T-----------------------------------NAHA----DMVVEELRAAFKKKYP 753 T A ++ + R + Sbjct: 541 TANEDDQDANGSMSYESDPPPLRMVADPPAPYLKKGEEAAPTAPVIINKHSREKLDEYIG 600 Query: 754 QLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 + +++ KE+ +I++ V++ TG D + + + Sbjct: 601 HYNKMFGTAYSTKDSVSFYNYYNDVSKKVKEKQIDILLVVNMFLTGFDSKKLNTLYVDKN 660 Query: 814 VRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST-------LESVDTMRPVVVRPKV 866 ++ L Q R R+ +V K+ I ++ + D +++ P Sbjct: 661 LKYHGL-IQAYSRTNRIDNDV-KSQGNIIVFRNLKKATDEAIALFSNKDAKDIIIMEPYE 718 Query: 867 ELQTLVNEITDSETYKITEADGRSFAEHSHEQL--VAKLQRIIGLATFNRDRSETIDKQV 924 + D + + +++L + + ++ + ++ + + Sbjct: 719 DYAEKFGAAFDKLLTVAPTVESVNQLTTEYDELEFIKAFRELMRIKNVLTTFADFKWEDL 778 Query: 925 RRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLND---- 980 ++L +D + +++ + + + + + + ++ + Sbjct: 779 AMSEQLFEDYKSKYLD-LHDKVKFDTQKEKVSILEDVDFELELIHRDEINVAYILKLLAN 837 Query: 981 --APIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINR-PRDLTR 1037 D + + + L + E + + + + + + + Sbjct: 838 LNNGSKADQEKKRKEIIDLLTGEANLRSKRELIEKFIAENLPRIEDNETLPDEFEKFWNE 897 Query: 1038 KGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHAL 1097 + + ++ + + E + E + ++ R + L E + L Sbjct: 898 EQVKAFKQLVEEEKLSE---------PKTEKLIESILFSEREPLREEVLGLLEGNMPTVL 948 Query: 1098 TRIKGENDWSSEQLSWLDRLAQALK 1122 R K S+ + +++ + + Sbjct: 949 QRKKVGERVLSKIMGFIETFVEGIV 973 >UniRef50_Q47GH2 Type I site-specific deoxyribonuclease HsdR n=5 Tax=Bacteria RepID=Q47GH2_DECAR Length = 1077 Score = 360 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 139/1053 (13%), Positives = 305/1053 (28%), Gaps = 156/1053 (14%) Query: 166 AEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAY 225 A + E + T +A A + +Q ++R Sbjct: 34 AVANLYNETFGQDGTEGRTSEAEVILTRRLRKALERINPGYSASAYDQAIEQLTEDRSKQ 93 Query: 226 HKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWP 285 +QA + L + + I + + +T+ + P N Sbjct: 94 LPVNANQAFYKLLR---DRVKVEITDN------EGNPQTVELTVIDWRNPENNDFFLTQQ 144 Query: 286 TGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLE 345 + D V FV P+ +E K ++ + + Y + + Sbjct: 145 MWVSGEMYKRRCDLVGFVNGIPLVFIELKAPHVPLKSA------YDDNLKDYKGQSIPQL 198 Query: 346 HYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRN 405 + + + TS + F E+R + + Sbjct: 199 FHPNAFILLSNGSQTRIGTLTSPWEHFF----------EWRRIDDETEA-------GSTS 241 Query: 406 MSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQE----DAVRAVEKAIV 461 + A+ LL+++ + + G+ + + +Q A+ + K Sbjct: 242 LDTAIRGMCDKRRLLDIVENFTIFE----EARGGLIKKVAKNHQYLGVNKAIAQMIKLRE 297 Query: 462 KG-----QQEILLAMATGTGKTRTAIAMMFRLIQSQRFK-RILFLVDRRSLGEQALGAFE 515 G ++ + G+GK+ + + +++++ K L + DR L +Q F+ Sbjct: 298 SGDVEAAKRLGVFWHTQGSGKSLSMVFFTQKILRTLPGKWTFLIVTDREELDDQISKTFK 357 Query: 516 DTRI---------NGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVA 566 T + L D + +Q E + Sbjct: 358 ATGAIPNAKLGGTKDNILVRAASSNHLKQLLKTDE-RYIFTLIQKFRTEAGAQYEKLSDR 416 Query: 567 RYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----- 621 ++ DEAHR + R L H A + T TP Sbjct: 417 SDIIVITDEAHRSQY---------------DIFALNMRNALPH--AAFLGFTGTPLIAGE 459 Query: 622 ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGE 681 T ++FG+ V Y + ++ DG + + E++ + Sbjct: 460 EERTREVFGDYVSVYDFARSIEDGATVPLYYENRTPELQITNQNLNKDIEKL----LEEA 515 Query: 682 VINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTG-SQKTLVFCVTNAHADMV 740 +++ E + E A + + +L + G K ++ C+ A A + Sbjct: 516 ELDEAQEQKLEREFAREYHLITRDDRLETIAEDLVKHFLGRGYRGKAMMVCIDKATAVRM 575 Query: 741 VEELRAAFKKKYPQLEHDAIIKITGDADKDARKV-------------------------- 774 ++++A +++ +L D + A K+ Sbjct: 576 YDKVQAYWQQHLAELHEKLTKATGDDKEILAEKIMVMDTTDMAVVVSQSQNEIEDLKAKG 635 Query: 775 ------------QTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 + + +F + +V + TG D+P+ + + +R+ L Sbjct: 636 LDIVPHRQRMLKEDLDEQFKDPDGNLRLVFVCAMWITGFDVPTCSTLYLDKPMRNHTLM- 694 Query: 822 QMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETY 881 Q RA R+ P K++ I D V I+ L+ + +P + Sbjct: 695 QTIARANRVSP--GKSAGLIVDYVGIFRNLQDALRIYAKPNQPGQLPINDKAALVAQLEA 752 Query: 882 KITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNG 941 + A+ + + V L + + + A Sbjct: 753 LLERAESFCTDLGINLKGVVNTPPEKRLEALQEAMNTILGEGENTTKAYLLLAG-----Q 807 Query: 942 FASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVS---VKSLY 998 A + P +A + + +A L + + D ++ D ++ Y Sbjct: 808 VARTFKSILPDAAANAYAPMSVLVAYLGAMIKALRPPPDISDVMNDLDALLDDSIATEGY 867 Query: 999 GDYDTPQ----------DFLEAFDSLVQ-RSPNAQPALQ-AVINRPRDLTR------KGL 1040 P+ DF + + + L+ + + + R L Sbjct: 868 RIGHKPEAEALIDLSQIDFAALQEKFAEGKKATETEKLKGQIEQKLEKMVRENKGRTDFL 927 Query: 1041 VELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRI 1100 + Q+ D + +L +KE A+ + + A + L E + LT+ Sbjct: 928 EKFQKLIDAYNSSSHNLEAFFKEL---LAFAQNLTEEEQRAHRENLSEEELAIFDLLTQ- 983 Query: 1101 KGENDWSSEQLSWLDRLAQALKEKVVLDDDVFK 1133 E S ++ + ++A+ L K+ + V Sbjct: 984 -PEPALSEKEKDEVKKVAKELLAKLKAEKLVLD 1015 >UniRef50_C7WVK1 Type III restriction enzyme n=10 Tax=Firmicutes RepID=C7WVK1_ENTFA Length = 1014 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 126/917 (13%), Positives = 279/917 (30%), Gaps = 123/917 (13%) Query: 265 LRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR--NNIDVPA 322 L + + E ++ N D VL + P+ +E K V Sbjct: 110 LNDERMEKYEANSFTCTRQFA---YSPNNHKTIDMVLSLNGIPLVALELKNQYTGQTVEN 166 Query: 323 RLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNG 382 + + + F Y GK+ + +PF +NG Sbjct: 167 AKLQFQKDHDPKELVFRFNRRFLVY-----FAVDHTDVYMTTKLDGKKTYFLPFNQGSNG 221 Query: 383 REYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSE----PQKQNQWFADNP 438 S +D T + + + + L++++ +K+ Q + Sbjct: 222 PGRVGGAGNPSN---KDGYPTAYLWEKV---LTRDNLMDIIQRFMNLEIKKEKQGDREVT 275 Query: 439 GMSELGLRYYQEDAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLIQSQR--- 493 + + RY+Q D VR + + + L+ + G+GK+ + + + L Sbjct: 276 KKTLIFPRYHQLDVVRKLVADVKSHGSGENYLIQHSAGSGKSNSIAWLAYHLASIHDQLN 335 Query: 494 ---FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK--FPEDSTKIHVAT 548 F I+ + DR L Q + +I D K D D KI + T Sbjct: 336 YPIFSSIIIVTDRTVLDRQLQNTIMNFDHQTGLVETIDDRKSSQDLKEAINDGRKIIITT 395 Query: 549 VQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYR---- 604 +Q + + R ++VDEAH + Q Y Sbjct: 396 LQKF--PVIYQEVDQVEGRNFAVIVDEAHSSQTGNSAQKLKAALSDKSKSLEEYYELEGE 453 Query: 605 --RILD---------------HFDAVKIALTATPALHTVQIFG--------EPVYRYTYR 639 +L H + A TATP T+++FG EP + Y+ R Sbjct: 454 VDDVLPDAEDELVQQLAAQGKHQNLSFFAFTATPKEKTLEMFGTKQPDGHFEPFHVYSMR 513 Query: 640 TAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFN 699 A+ +GF++D + + + + ++ + ++ Sbjct: 514 QAIEEGFILDVLKNYMTYSTSYKIAREIEDNPELPKSEATRAIVRFQSLHPWAVAQKT-- 571 Query: 700 RGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDA 759 +++ F + G K +V + HA ++E + K + Sbjct: 572 -AVMVEQFRAVTRTAI------GGQAKAMVVTASRLHAVRYMKEFKKYIANKGYNDLNVL 624 Query: 760 II----KITGDADKDARK----------VQTMITRFNKERLPNIVVTVDLLTTGVDIPSI 805 + + G+ + K + + NI++ + TG D P + Sbjct: 625 VAFSGLVVDGETEYTETKMNVTKSGENVRENQLKEAFHTDNFNILIVAEKYQTGFDEPLL 684 Query: 806 CNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVR 863 + +K++ + Q R R P K I D V+ +E+ +R Sbjct: 685 HTMFVDKKLKG-VKAVQTLSRLNRTMP--GKKDTFILDFVNDVEDIEAAFQPFYEQTNLR 741 Query: 864 PKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQ-RIIGLATFNRDRSETIDK 922 ++ + + + + + + +Q + R++G + + Sbjct: 742 EEINVNLIYDTQSKLRKFNVYNQGDIERVMKLVKQAQKQQNERLLGRISSMFKPIMDRYE 801 Query: 923 QVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAP 982 ++ + ++ NF+ + + + + E+ + L+ L + D Sbjct: 802 EMNKDNQYQFRVTLRNFSKWYDYISQLDRLFDMELLEERIFTGYLLKFLPKETRENIDIS 861 Query: 983 IFLDID-----------------DEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPA- 1024 + ++ + + P D ++ + ++ + P Sbjct: 862 DKVKLEYYKLRQDFSGEIHLVNKEGELVNPKTIDAGIKPPDERDSLEEIIHKINERFPND 921 Query: 1025 --------LQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGH 1076 ++ + D +V + + D Q FE+S +K+ E + Sbjct: 922 FDEGDRVLVEILYRSFADNPDLKVVSMAKNNDAQMFEKSLFPDVFKDKVMEQ-------Y 974 Query: 1077 IRRAAVGDALKPFEERV 1093 + A + + ++R Sbjct: 975 EKNNAAFEKMFGHDDRY 991 >UniRef50_A7HVM3 Type I site-specific deoxyribonuclease, HsdR family n=7 Tax=Alphaproteobacteria RepID=A7HVM3_PARL1 Length = 1045 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 136/932 (14%), Positives = 271/932 (29%), Gaps = 108/932 (11%) Query: 182 IAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLS 241 + + Q R L + + + + + T+Q I TL L Sbjct: 19 LDDVLADQLLKINSFTHRGREYPFDLEDAHEAIRRLKPTPDRQKGLRGTNQDIYDTLVLG 78 Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 ++ + G + S + RF P + AE + + D V Sbjct: 79 TTITKTI-------QG-DSKSYSFRFIDWDTPSNNIFHVTAELAVERTASTQTKRCDIVG 130 Query: 302 FVGLKPIAVVEAKRNNIDVPARLNESYRYS--KCFDNGFLRETLLEHYSPDEVHEA-VPE 358 +V P VVE KR+ + ++ Y F LL + E A V Sbjct: 131 YVNGIPFLVVENKRSTESLKKAKSQLIGYQNEDNIPQLFHFAQLLMVMNRAEARYATVGA 190 Query: 359 YETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDT------------RNM 406 + WQ + N R + D R Sbjct: 191 TQQYWQTWRDDEDRDEDIAKQANRPLSREEADAIFSGDFSDARAFFEAMAAEGPRAITAQ 250 Query: 407 SKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKG--- 463 +A+ RPE LL+++ G R+ Q +R + I Sbjct: 251 DRAIHALCRPERLLDLVRRFTVFD--------GGVRKIARHQQFFGIRETVERIRHYDIG 302 Query: 464 --QQEILLAMATGTGKTRTAIAM--MFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI 519 ++ ++ G+GK+ T + + L ++ RI+ + DR L +Q F+ + Sbjct: 303 GRRKGGVIWHTQGSGKSLTMVMLGRALALDKAIPNPRIIIVTDREDLDKQIKDTFKSCDM 362 Query: 520 NGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRG 579 L + + + + + E + ++VDE+HR Sbjct: 363 KP---IRATSGSDLVEHIHNKTA-LVTTIINKFDSAAKNAAE-VDEDSNIFVLVDESHRS 417 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYR 635 ++ + + RR+L A I T TP +T+ FG +++ Sbjct: 418 QTG---------RYGGHSQFATKMRRLLP--KACYIGFTGTPLLKKEKNTLATFGGLIHK 466 Query: 636 YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEV 695 Y AV D ++ +++ + GV E++ + + + + + + Sbjct: 467 YPIDEAVADRAVVPLLYEGRLVEQQVNAGVIDRWFEKISEGLSKSQKADLKRKFSRTDAL 526 Query: 696 ADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAF------- 748 + + + AF+ + + TG K + + A A E L Sbjct: 527 SKTGQAIRAKAFD--ISEHYRQHWQGTG-FKAQLVAPSKAAAVRFKEVLDEIGHVTSEII 583 Query: 749 -------------KKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 ++ + ++ + + + F P I++ V Sbjct: 584 ISAPDENEGNEEVDRESKDIVRAFWTRMMARYRNEDEYNRQITEAFKGSGDPEILIVVSK 643 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN--KTSFKIFDCVDIYSTLES 853 L TG D P + + +R L Q R RL E K I D + L++ Sbjct: 644 LLTGFDAPRNTVLYVCKTLREHNLL-QAIARVNRLYEEDGTEKEFGFIIDYEGLLGELDA 702 Query: 854 VDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFN 913 T + + K+ R + + +++ Sbjct: 703 ALTTYSAFEGYEDADLIGAVHDVREQIRKLPHVHDRLWDLFKSVRNKKDMEQFEQFLGDE 762 Query: 914 RDRSETI----------------DKQVRRLDELCQDAAGVNFNGF--ASRLREKGPHWSA 955 R+E DK DE + ++ F R + + Sbjct: 763 AIRNEFYERLRAFSRCLHMSLSSDKLFDVFDEARVETMKRDWRQFTELRRSVQLRYQETV 822 Query: 956 EVFNKLPGFIARLEK-LKTDINNLNDAPIFLDIDDEVVSVKSLYGDYD--TPQDFLEAFD 1012 +V P L+ + + ++ D + +V G + A Sbjct: 823 DVTEFEPKIQKLLDDHVVAMPAETIIEMVNINDPDALKAVVDDKGVSEASRADRIASATR 882 Query: 1013 SLVQRSPNAQPALQAVINRPRDLTRKGLVELQ 1044 ++ P R +L + + + + Sbjct: 883 RVITEKMEEDP---TFYMRFSELLEETIRDYR 911 >UniRef50_C0QY63 Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0QY63_BRAHW Length = 1021 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 126/922 (13%), Positives = 289/922 (31%), Gaps = 102/922 (11%) Query: 259 QADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNI 318 + S ++ + + + E D ++++ P+ V+E K Sbjct: 103 ENKSTYIKLVDYKNIDNNYFWVVNQLSIKDVED---KRPDVIIYLNGLPVVVMELKNPVK 159 Query: 319 D---VPARLNESYRYSKC-FDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKI 374 D + + Y + N F + + I Sbjct: 160 DDETIDEAYTQIKNYMENWISNLFYYNAFCVITDGVHAEVG---------TITADKTRFI 210 Query: 375 PFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWF 434 + + + + + + + E L +L Sbjct: 211 AWKRESEDIDVIKKNSDINQQYK----------TLINGMLQKERFLNILHYFVFY---IE 257 Query: 435 ADNPGMSELGLRYYQEDAVRAVEKAIV-----KGQQEILLAMATGTGKTRTAIAMMFRLI 489 ++ ++ Y+Q AV + I K ++ ++ TG+GK+ T + + Sbjct: 258 SNEKAKIKILAAYHQYFAVNKAVEKIKEAYNKKSRKAGIVWHTTGSGKSFTMLMAAKVIS 317 Query: 490 QSQRFKRILFLVDRRSLGEQALGAFEDTR--INGDTFNSIFDIKGLTDKFPE-DSTKIHV 546 Q+ I+ + DR L +Q F R +T I + L + +S I Sbjct: 318 QNLYNPTIVIITDRTDLDDQLFLTFSSARSTYLNNTPEKIESRQDLIKRLKGINSGGIIF 377 Query: 547 ATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRI 606 T+Q Q DE + ++VDEAHR + L+K + + + Y++ Sbjct: 378 TTLQKF----EQYDEALSERSNIVLMVDEAHRSHDLEKSKIKDGQIKYNMSKYIND---- 429 Query: 607 LDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ 662 +A+KI T TP +T +FG+ + Y AV D + ++ Sbjct: 430 -AFPNAIKIGFTGTPIESDDRNTKDVFGDYIDCYDMTQAVEDDVTVPIYYEGRVNHLKLD 488 Query: 663 EGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT 722 E + E+ + E + +E + E++ + L ++C ++ + + Sbjct: 489 EEMLKKADEEYTMMLENNEATEEAIEKSKK-ELSKMDAILGADDVIDSLCKDIIAHYEKR 547 Query: 723 GS---QKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAII-----KITGDADKDARKV 774 + K + + + +++ ++ G Sbjct: 548 KNVLIGKAFIVAYSRPIGIKIYKKILELKPDWENMIKPVMTTSNKDPVEWGKMLGSKSHR 607 Query: 775 QTMITRFNKE-RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE 833 + F + I V V + TG D+P + + + + + L Q R R+C Sbjct: 608 DNLAKEFKDKTSNFKIAVVVSMWLTGFDVPPLDTMYIYKPIANHDLM-QTISRVNRVC-- 664 Query: 834 VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAE 893 +K + + D + I L+ ++ D + K+ + E Sbjct: 665 KDKDAGLLVDYIGIADNLKKAMKDYTKRD---------IDNYGDMDIAKMALPKFKEALE 715 Query: 894 HSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLRE----- 948 + + + + +R + I K + L + F+ ++ Sbjct: 716 Y-IRNIFKDIDYSSFYTCSSSERMDIILKLSDHISSLEETGKNDFFDKAVQLMKAEKLCR 774 Query: 949 --KGPHWSAE--VFNKLPGFIARLE--KLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYD 1002 S E ++ + I ++E + + + L+ + + +++ + Sbjct: 775 SIITREESVETALYESVKVIINKIENHQKLSIKDINQRINKILENSIQSEGIMNIFEGNE 834 Query: 1003 TPQDFLEAFDSLVQRSPN---AQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRK 1059 ++F ++ N AL+ + D + L + ++K Sbjct: 835 DSKEFSLFDKKYLKSIANMKYKNIALEVLNKLLNDKIKATLK---VNIIQSGIFSDRIKK 891 Query: 1060 AWKETRNEDIA-----------ARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSS 1108 + N I + + +I + A L E+ + A+ I +D++ Sbjct: 892 IMERYNNNAIDNIEVIDELLNLSDDLDNIEKEANDLGLTNEEKAMYDAM-LIPINSDYNK 950 Query: 1109 EQLSWLDRLAQALKEKVVLDDD 1130 E++ + + + EK D D Sbjct: 951 EEIKTMAKELAVIIEKNSEDID 972 >UniRef50_C4FJW2 Type I restriction-modification system, R subunit n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FJW2_9AQUI Length = 967 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 142/1020 (13%), Positives = 309/1020 (30%), Gaps = 119/1020 (11%) Query: 157 QVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAK 216 Q + E + L + K + E +T LE ++ +L Sbjct: 14 QKPALNYLKQETVKYDTETYTLKWEVITENQKDKLNELRTSETQIILEPIFKQQIKKLNP 73 Query: 217 QTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPG 276 E + D E ++L + + + +RF Sbjct: 74 FLTDEEIDNLLKQLDTLPPSIQGNYEAW-KYLRGEKPFYSSKEKRDLNIRFIDTENISNN 132 Query: 277 VNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNID--VPARLNESYRYSKCF 334 AI E+ + D V F+ P+ E K D + +++ RY + Sbjct: 133 TFHAIEEF--TITNGKYRNRFDIVFFINGIPVIFQENKSPKKDNAIDEGIDQVKRYHEES 190 Query: 335 DNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSG 394 + + + K Sbjct: 191 KEILKLLQAFVITNNLHFSYGPTWFSSV-----------------------------KDT 221 Query: 395 IWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVR 454 YR+ ++ + + + + ++++ Q+ + + ++ L+ +Q AV Sbjct: 222 YNYREQQEGDYK-RLIESFFDRQRTIKLILDYI----QFLYKDNQLQKVILKPHQIRAVE 276 Query: 455 AVEKAIVKGQQ-EILLAMATGTGKTRTAIAMMFRLIQSQRF--KRILFLVDRRSLGEQAL 511 + + + + L+ G+GKT T I ++++ +F IL +VDR L +Q Sbjct: 277 KIIQRAEEEDKYRGLIWHTQGSGKTLTMITAAKLIMENPKFQNPTILMIVDRNELEQQLF 336 Query: 512 GAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCI 571 E ++ K L + ED + ++T+ + + + Sbjct: 337 KNIESAKL---PVERAKSKKDLEARLREDFRGLIISTIHKF----DDFPPNLNTRKNIFV 389 Query: 572 VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQ 627 +DEAHR D +A I T TP +T Sbjct: 390 FIDEAHRTTGGDLGNHLMGALP-----------------NATIIGFTGTPRATGEANTFL 432 Query: 628 IFGE-----PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEV 682 FG+ + +Y+ ++ DG + + + E ++ + E Sbjct: 433 TFGKDDENLYLDKYSIAESIKDGTTLRLHYTHAPNEYLINQEILEKDLEALKNKADDVET 492 Query: 683 INDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVE 742 ++ +E+ + + + + + + ++P G K V V+ + + Sbjct: 493 LDRAIENLSSKIILEDEKRI--EEIAKVIAKHFRENVEPNG-YKAFVVAVSRKACVLYKK 549 Query: 743 ELRAAFKKKYPQLEHDAIIKITGD---ADKDARKVQTMITRFNK-ERLPNIVVTVDLLTT 798 L +Y ++ + D + + + F +LP I++ D L T Sbjct: 550 ALDKYLPPEYSKVVISPYYNDDKELKEHHLDPEQERQVRENFKDPNKLPKILIVTDKLLT 609 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN--KTSFKIFDCVDIYSTLESVDT 856 G D P + + + +R +L Q R R + K + I D V I S L+ Sbjct: 610 GFDAPILYCLYLDKIMRDHVLL-QTIARVNRPYEKDGLKKPAGLIVDFVGILSDLKKALE 668 Query: 857 MRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDR 916 + + + ++ E ++ E + +LQ I + ++ Sbjct: 669 FDSKDLSEIAQAIQDIEKL-KEEFVELIENAKPVIKYLEIIKPENRLQAIGDYFRADENK 727 Query: 917 SETIDKQVRR----LDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLK 972 R+ D L D + +L + LP EK+K Sbjct: 728 YHEFKNLYRKIKDIYDILSPDPFLSPYLDEFEKLTNIYQVAKSLFEPVLPAEKELSEKVK 787 Query: 973 TDINNLNDAPI------FLDIDDEVVSVKSLYGDYDTPQDFLEAFDS-----------LV 1015 I + I +IDD+++ D + +++ + V Sbjct: 788 QLIYKHSSVRIDFISEDIYEIDDKLIKRLKAGDDTINIYNLVKSLEKDLEEEEEEKKPYV 847 Query: 1016 QRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESS-----LRKAWKETRN---- 1066 + L+ N + T + L EL++ + + E L+ + ++ Sbjct: 848 KPLKEKLQDLKERYNLRQIETHQMLEELKQLIEDKLNFEKEEKDPVLQTIEYDLKDFPEI 907 Query: 1067 ---EDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKE 1123 E++A + + + + + + RI N ++++ L Sbjct: 908 KNPENVAKEIFNALNDFKNWKVSEEQKRNLKIEMYRILDGNVQDEVMKKIVEKILGHLMA 967 >UniRef50_Q07ZW9 Type III restriction enzyme, res subunit n=10 Tax=Proteobacteria RepID=Q07ZW9_SHEFN Length = 1087 Score = 359 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 154/1109 (13%), Positives = 321/1109 (28%), Gaps = 145/1109 (13%) Query: 165 QAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKA 224 Q+++ +Q Q L G + + + A + + +K A+ TE+ A Sbjct: 11 QSDILSQMQSQGWLLGESSKYNKQLALYPEDVIDFVKATQPEQWDKLAQHFPDTERNPTA 70 Query: 225 YHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPE----PGVNKA 280 + + N + + +++ Q++ G + + + P+ N Sbjct: 71 TADALLKSLERDLQN---KGTLWVLRNQVKDRGAKFTLCSFKPDHDLNPDASARYDKNIL 127 Query: 281 IAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN-NIDVPARLNESYRYSKCFDNGFL 339 G G D LFV P+A E K + + + + D Sbjct: 128 KVVPELVYSPNGYDGRLDLTLFVNGIPVATCELKSEFKQSITNAKVQYMKDRQPKDPITK 187 Query: 340 R-ETLLEHYSPDEVHEAVPEYETSWQD-TSGKQRFKIPFCYSTNGREYRATMKTKSGIWY 397 + E LL VH AV +Y + +GK+ F +PF T + + Sbjct: 188 KPEPLLTFKRGALVHFAVSQYNVAMTTRLAGKKTFFLPFDQGTAEGGQGNDIPEDPNEY- 246 Query: 398 RDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSE-----LGLRYYQEDA 452 T + + + + LL +L + + G + + RY+Q Sbjct: 247 ----ATSYLWNEI---FQKDNLLLILSRYIHLEVKDEEHLDGSIKVKETLIFPRYHQWAV 299 Query: 453 VRAVEKA--IVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQ------------------ 492 V + I Q+ L+ + G+GK+ + + +L Sbjct: 300 VSKLLNTVDIEGTGQKYLIQHSAGSGKSNSIAWLAHQLASKHYTSPSIEIDHPELGKKVG 359 Query: 493 --RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE------DSTKI 544 F ++ + DR L Q N + + K + ST I Sbjct: 360 DKVFDSVIVITDRTVLDSQLQDTIYQFDHNEGMIARVNREEAQGSKSSQLAGELKASTSI 419 Query: 545 HVATVQSLVKRTLQ-SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQ------FRSQL 597 + T+Q+ + R ++ DEAH + E+ +L Sbjct: 420 IIVTIQTFPHVLEAIRKDSTLAGRSFAVIADEAHSSQTGTTARKLREVLMTEQLEGDEEL 479 Query: 598 DYVSAYRRILDHF----DAVKIALTATPALHTVQIFGE---------------PVYRYTY 638 D R L+ + A TATP T+++FG P + Y+ Sbjct: 480 DSEDMLRLSLEARKGSKNISYFAFTATPKAKTLELFGRKPDLDAPASDGNKPLPFHVYSM 539 Query: 639 RTAVIDGFLIDQDPPIQ-IITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVAD 697 R A+ +GF++D +V+ ++ Sbjct: 540 RQAIEEGFILDVLQNYTSYRVAYQLAHGQPESDHEVDSKKASSKMAKWVRLHP------- 592 Query: 698 FNRGLVIPAFNRAVCNELTNYLDP--TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQL 755 I + + + G K +V + A K + Sbjct: 593 ----YNIAQKVETIVEHFNSKIKHLLGGEAKAMVVTSSRLEAVRYKLAFEKYVHTKGYEN 648 Query: 756 EHDAIIK------------------ITGDADKDARKVQTMITRFNKERLPNIVVTVDLLT 797 + + T + + + M F+ +++ + Sbjct: 649 INAMVAFSGEVNDPDYSLLQGNDQPFTENNMNPNLRGRDMRKAFDTNDY-QVMLVANKFQ 707 Query: 798 TGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV----DIYSTLES 853 TG D P + + + ++ + Q R R K + D V D+ + Sbjct: 708 TGFDQPKLVAMYVDKPLKG-VECIQTLSRLNRTY--KGKDMTFVLDFVNDPEDVLKEFKV 764 Query: 854 VDTMRPVVVRPKVELQ-TLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATF 912 + + ++ ++ D Y+ E + A +S + AKL + Sbjct: 765 YFQTAELSGVSDPNIVYEIMEKLADVGIYQWFEVEAFVTAYNSKQANQAKLANLCKAPVE 824 Query: 913 NRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLK 972 V ++ + A ++ N A + E + E + L F L Sbjct: 825 RFSVRYKEASHVLQIAQADLSKAKLDRNDKAIKFAENSVKHAKEARDVLEVFKK---DLI 881 Query: 973 TDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRP 1032 + + +D +D + S++ + P + D + + R Sbjct: 882 SFYRYYEFSSQIVDFNDYELEKLSIFAKHLHPLLRFDVIDDDI-----DLSDVVMTHYRL 936 Query: 1033 RDLTRKGL---VELQEWFDRQHFEESSLRKAWKETRNEDIAARLIG-----HIRRAAVGD 1084 + L ++ E A + ++ +I I + Sbjct: 937 HEQREADLHLGHKIGEEPQSYLAPSKEGSGATPKDPKTELLNEIIERMNDLFIEDGLSEN 996 Query: 1085 ALKPFEERV-------DHALTRIKGENDWSSEQLSWLDRLAQALKEK--VVLDDDVFKTG 1135 + + + + + +++ + + + + A+ E V D + Sbjct: 997 DMLNYANTIAGKISENETVMDQLRSNTKEQAMLGEFPNSINNAVIESMDVHNDMAMKLLS 1056 Query: 1136 NFHRRGGKAMLQRTFDDNLDTLLGKFSDY 1164 N G A L FD + L ++ Sbjct: 1057 NEAVAKGFAGL--MFDVLMKGLAKSVNEA 1083 >UniRef50_C1SJS9 Helicase, type I site-specific restriction-modification system restriction subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJS9_9BACT Length = 1066 Score = 359 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 143/1086 (13%), Positives = 313/1086 (28%), Gaps = 137/1086 (12%) Query: 170 AQQQKLVALNGYIAILEGKQQETEAQTQARLAAL--EAQLAEKNAELAKQTEQERKAYHK 227 A ++ + + + R AL LA + E+ + + Sbjct: 4 AHREIHFEDYIVDQLTSSGWEVGKHTEYDRGRALYYPDVLAWIQDSQPETWEKLIRIHGS 63 Query: 228 EITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADS--------KTLRFSKGARPEPGVNK 279 + + R + E ++ I+ R G ++ + N+ Sbjct: 64 DTEPAVLDRLVKSLESKTGGTINVLRRGFGMAGGGTIQMSQTMPEDDRNETSVKRYNQNR 123 Query: 280 AIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN-NIDVPARLNESYRYSKCFDNGF 338 D V F+ P+A E K + V A + + K + Sbjct: 124 LRIVRQVRYSLDNENA-IDLVAFINGIPVATFELKTDFTQSVEAAKAQYKQDRKPKSSSS 182 Query: 339 LR-ETLLEHYSPDEVHEAVPEYETSW-QDTSGKQRFKIPFCYSTNGREYRATMKTKSGIW 396 R E LL VH A+ + E G+ + +PF +G S Sbjct: 183 GRLEPLLAFKRGAIVHFAMSDSEVYMATKLDGEATYFLPFNQGNDGAAGNPPSAENSYPV 242 Query: 397 YRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGM-----SELGLRYYQED 451 + + L + + + + G + + RY+Q + Sbjct: 243 SYMW----------ERILQKDNWLRIFHRFVLIEKKEYETASGEIRFKETMIFPRYHQWE 292 Query: 452 AVRAVEKAI--VKGQQEILLAMATGTGKTRTAIAMMFRLIQ------SQRFKRILFLVDR 503 +V V A+ + + L+ + G+GKT T + LI+ + F ++ + DR Sbjct: 293 SVTKVIDAVKVEEAGHQYLIQHSAGSGKTNTISWISHELIRLRYASGASYFNSVIVVTDR 352 Query: 504 RSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE------DSTKIHVATVQSLVKRTL 557 L Q A +++ K + T I V T+Q+ Sbjct: 353 TVLDAQLQEAISQIEHQYGVVHAVDREASSLSKSQQLANALMTGTPIIVVTIQTFPYAME 412 Query: 558 QSD-EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYR--RILDHF---- 610 E + +++DEAH Q ++ + +++ IL+ Sbjct: 413 AILTEQSLQDKRFAVIMDEAHNSQTGSTAQKLRQVLALNSKADMASMTSDEILEMIQKVR 472 Query: 611 ----DAVKIALTATPALHTVQIFGEP---------------VYRYTYRTAVIDGFLIDQD 651 + A TATP T+ +FG P + YT + A+ +GF++D Sbjct: 473 GMPKNVSHFAFTATPKHSTLSLFGRPMDPSKPLSKDNPPVPFHTYTMQQAIEEGFILDVL 532 Query: 652 PPI-QIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRA 710 T ++ +V+ + + + Sbjct: 533 QNYTHYDTAFRIGEKFVKDETRVDAKYAKRALARWVSLHPTNVSQK-----------VEF 581 Query: 711 VCNELTN--YLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYP--------------- 753 + + + G K +V + A A +KK Sbjct: 582 IVEHFYSSVAMLLNGQAKAMVVTSSRAAAVKYKLAFDKYVEKKGYVGIRSLVAFSGQILG 641 Query: 754 -QLEHDAI-----IKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICN 807 + D T D + + + F+ +++ + TG D P + Sbjct: 642 KDINDDFNHFPDDQSFTEDNMNPDTRGRDLRKVFDTREY-QVMLVANKFQTGFDQPKLVA 700 Query: 808 IVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTL--ESVDTMRPVVVRPK 865 + +K+ S + Q R R +KT + D + + + V Sbjct: 701 MYLDKKI-SGVEAVQTLSRLNRTYAGKDKTY--VIDFANKPDEIVEAFKTYYKSADVANV 757 Query: 866 VELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVR 925 + + + + ++ EA+ + +++ L DR + +++ Sbjct: 758 QDPNIVYDMKERLDGMQMFEAEEVRQFGIAITSAKVTHEKLYSLTQPATDR---FNGRMK 814 Query: 926 RLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFL 985 L+ +A V+ F ++ + + + + ++L L Sbjct: 815 MLN----NAIEVSEKEFLLAKSKQDEAGTKKADARRSEYTKARDELLIFSEGLTKFVNIY 870 Query: 986 DIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQE 1045 + ++V ++ + + ++ Q L + +T G V+ + Sbjct: 871 EYVAQLVE--FGDASIESFASYAKLLSKRLKGIAPEQVDLNGLQLTHFKMTDTGSVDTRL 928 Query: 1046 WFDRQHFEESSLRKAWKETRNED--IAARLIGHIRRAAVGDALKPFE--------ERVDH 1095 + E + ++ R+ + LI + D + E++ Sbjct: 929 DAADKPLLEPAKGTGGRDPRDRERAYLQELIKMLNDVFGKDITDKDKVAFAVHVSEKLRD 988 Query: 1096 ALTRIKGENDWSSEQ-------LSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQR 1148 + + S EQ + AL + + F R +++ Sbjct: 989 NKKVMAQVKNNSREQAMKADLPAEATKAIVGALGSHQAMAKRLLSDE-FTRNTFLSVVYE 1047 Query: 1149 TFDDNL 1154 + Sbjct: 1048 LLKSDA 1053 >UniRef50_B2IMB0 Type I restriction-modification system, R subunit n=31 Tax=Bacteria RepID=B2IMB0_STRPS Length = 777 Score = 359 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 190/874 (21%), Positives = 322/874 (36%), Gaps = 136/874 (15%) Query: 232 QAIKRTLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDE 290 + IK +SEE+ + I + GW + + E E K Sbjct: 3 EFIKSKKEMSEEDIKANFITPAIVSKGW-------KNGEHIAYEEYFTDGRIEVRGDKAR 55 Query: 291 TGNQGFADYVLFVG-LKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSP 349 +DY L+ IA+VEAK N V A L ++ Y + D Sbjct: 56 RKEGKKSDYSLYYQFGTRIAIVEAKDNKHSVRAGLQQAIEYGEILD-------------- 101 Query: 350 DEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKA 409 +PF YS+NG G D Sbjct: 102 ------------------------VPFVYSSNG----------DGFIEHDRITREERELE 127 Query: 410 LPEWHRPEELLEMLGSEPQKQNQWFADNPGM------SELGLRYYQEDAVRAVEKAIVKG 463 L E+ EEL + E + S RYYQ+ A+ + + +G Sbjct: 128 LDEFPTREELFSRMTKEKGLTYEITEAISTPYYTDAFSMKTPRYYQQIAINRTIETVARG 187 Query: 464 QQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDT 523 Q+ ++ MATGTGKT A ++ RL ++ KR+LFL DR L +Q + D + Sbjct: 188 QKRVMFVMATGTGKTFMAFQIIHRLRKAGLAKRVLFLADRNILVDQTMAE--DFKPFEKV 245 Query: 524 FNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRT--LQSDEPMPVARYDCIVVDEAHRGYI 581 I K LT +S +I++ Q L + +D IV+DEAHRG Sbjct: 246 MTKI-TPKLLTAPEKLNSFEIYLGLYQQLTGEDGTETHYQKFDKDFFDLIVIDEAHRGSA 304 Query: 582 LDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATPA----LHTVQIFGEPVYRY 636 + S +R+++D+F A +I +TATP + FGEP+Y Y Sbjct: 305 KEN----------------SNWRKVIDYFSSATQIGMTATPKETKNASNTEYFGEPIYTY 348 Query: 637 TYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVA 696 + + + DGFL P +++ N V + E ++ G++I D + Sbjct: 349 SLKQGIEDGFL----APYRVMRVNLDVDVDGYRPET-GKVDANGQLIEDRY-----YGRK 398 Query: 697 DFNRGLVIPAFNRAVCNELTNYLDPTGSQ--KTLVFCVTNAHADMVVEELRAAFKKKYPQ 754 DF++ +VI + V +++Y+ ++ KT+VFCV HA+ + L Q Sbjct: 399 DFDKTIVIDDRTQRVAKFVSDYMKQNNARFDKTIVFCVDIDHAERMRAALVKE-NLDLVQ 457 Query: 755 LEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKV 814 ++ ++++TGD + ++ + P IV T LLTTGV+ + IV + Sbjct: 458 EDYRYVMQVTGDNAEGKAQLDNFMD--VNSNFPAIVTTSKLLTTGVNAKTCRLIVLDSNI 515 Query: 815 RSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNE 874 +S ++Q+ GR TRL P+ K F I D ++ + D P L+T Sbjct: 516 QSMTEFKQIIGRGTRLYPQKGKEFFTIIDFRNVTNLFADSDFD----GEPVKVLETGAKT 571 Query: 875 ITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDA 934 ++ S + E ++ V L + + N R + L A Sbjct: 572 VSGSTPGFVDEEGDPVEKYIVTDKQVTILNSTVQVLDENGKLITESLTDYTRKNILGSYA 631 Query: 935 AGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSV 994 N F + + ++L L+ ++ +IDD + + Sbjct: 632 ---TLNDFITVWH--TADKKKLILDELYKKGVYLDAIRESEGISEQ-----EIDDFDLLL 681 Query: 995 KSLYGDYD-TPQDFLEAFDS---LVQRSPNAQPALQAVINRPRDLTRKGLVELQ------ 1044 K YG + T + + L + S A+ L+ ++N+ D L ++ Sbjct: 682 KLAYGQKELTKTERINKLKQSGYLYKYSEEARAVLEILLNKYMDKGIGELESIETLKLPE 741 Query: 1045 --------EWFDRQHFEESSLRKAWKETRNEDIA 1070 + + ++ +A KE E Sbjct: 742 FQIYGGTFKIINTYFGDKKRYLQAIKELEQELFT 775 >UniRef50_D1VV13 Type I restriction enzyme, HsdR subunit n=8 Tax=Bacteria RepID=D1VV13_9FIRM Length = 1007 Score = 358 bits (919), Expect = 6e-97, Method: Composition-based stats. Identities = 136/1072 (12%), Positives = 306/1072 (28%), Gaps = 160/1072 (14%) Query: 154 LEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAE 213 L + +++ +++ L + ++ E + L+ Q+ N Sbjct: 22 LANYKKIDRASESTYQSEADLERDLINNLMTQGYQRLEAGNSSDLY-KNLKEQIERLNGV 80 Query: 214 LAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARP 273 +E +R + + + E++R + + + + D L+ K Sbjct: 81 NFSSSEWQR------FLLEYLDAPNDGIIEKTRKIQENYIYD--FTFDDGNLKNIKLIDK 132 Query: 274 EPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKC 333 + N + K E ++ D + V P+ +E K+ + + ++ +RYSK Sbjct: 133 DNIFNNFLQVTSQIKQEGSHKNRYDVSILVNGLPLVHIELKKRGVSLHEAFDQIHRYSKE 192 Query: 334 FDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKS 393 N + + N E+ Sbjct: 193 SFNVENSLYKYVQIFVISNGTYCRYFANTTAQNK-------------NNYEFTCQWADAK 239 Query: 394 GIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAV 453 D+ D + +LE+L + + L +R YQ A Sbjct: 240 NKSINDLEDFT------RTFFEKRVILEVLTKYCVF-------DVSNTLLIMRPYQIAAT 286 Query: 454 RAVEKAIVKGQQE---------ILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 + I + + TG+GKT T+ ++ F+VDR+ Sbjct: 287 ERILWKIKSSYERKKAGTIEAGGFIWHTTGSGKTLTSFKTARLATGLSFIDKVFFVVDRK 346 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 L Q + ++ + D+ N D K L + +I V T+Q L + ++ Sbjct: 347 DLDYQTMKEYQRFQP--DSVNGSKDTKALKKAIEKKDDRIIVTTIQKLNEFVKKNPNHEI 404 Query: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPAL- 623 + ++ DE HR D ++ + + T TP Sbjct: 405 YDKNCVLIYDECHRSQFGDAQKNIRRSFK-----------------NYYQFGFTGTPIFP 447 Query: 624 -------HTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERI 676 T IFG ++ Y A+ DG ++ IT + +++ ++ Sbjct: 448 ENSLGTDTTAGIFGAQLHSYVITDAIRDGKVLKFKVDYNNITPKFKAAEREYDEKKLVKL 507 Query: 677 SPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAH 736 + + + + + + + F+ F + + Sbjct: 508 ESKMFLHPERITEITKYILRIFDTKTHRNEF-------YDIKNRRLRGFNAMFAVQSVDA 560 Query: 737 ADMVVEELRAA--------------FKKKYPQLEHDAIIKITGD-------ADKDARKVQ 775 A + EE + P E AI +I+ + + Sbjct: 561 AKLYYEEFQRQQSALDFDKRLRVATIFSYAPNEEGKAIGEISEENFDPCAMDSTAKEFLD 620 Query: 776 TMITRFNK-------------------------ERLPNIVVTVDLLTTGVDIPSICNIVF 810 +I +N + ++++ V + TG D P++ + Sbjct: 621 KVINDYNNYFKTNFSTAANEFQNYYKDLSLRVKNKEVDLLIVVGMFLTGFDAPTLNTLFV 680 Query: 811 LRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQT 870 + +R L Q R R+ +V KT I D+ + + L+ Sbjct: 681 DKNLRYHGL-IQAFSRTNRILNKV-KTFGNIVCFRDLEKATKDAIKTFGDENSLNIILEK 738 Query: 871 LVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDEL 930 E D + T + + + +++ K + + V+ EL Sbjct: 739 SYKEYIDGFIDEETGKTTKGY-KDLCNEILEKFPDPTEIELEADKK-----DFVQLFGEL 792 Query: 931 CQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDE 990 + + S + P + + ++ E + + + + +D D Sbjct: 793 LKSENILKNFDEFSSFEKIIPDRLMQDMKSV--YVDIREDILKLRHGDKENTMTIDFSDV 850 Query: 991 VVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGL-VELQEWFDR 1049 + L D L + + ++ + R + R L +E Sbjct: 851 EFQIDLLKTDEINLDYILNLILEKSKEHTD----IETLKVEVRRVIRSSLGTRAKEDLIM 906 Query: 1050 QHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSE 1109 + L +DI ++ + + + + Sbjct: 907 NFINSNKLTDL---KNTDDILESFYSFAKKEK------------EKNINNLIDRENLKEG 951 Query: 1110 QLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKF 1161 ++++ + D+ RRGG ++ +++L K Sbjct: 952 SKRFIEKAIEKGYASYSGDELDKIIPPTSRRGGAREKKK------ESILDKI 997 >UniRef50_C3NN84 Type III restriction protein res subunit n=1 Tax=Sulfolobus islandicus Y.N.15.51 RepID=C3NN84_SULIN Length = 763 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 175/928 (18%), Positives = 322/928 (34%), Gaps = 194/928 (20%) Query: 238 LNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFA 297 + +E ++ L D LRK GW + + E + Sbjct: 1 MPNTEADAITLCDEHLRKLGWNLEKFKKNHTLKDLFPNISF----------TENEGKHRP 50 Query: 298 DYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVP 357 DY L + + ++EAK+ +D+ A + E+ +K + Sbjct: 51 DYTLIL-GDKVILIEAKKKGVDLRAAIAEARESAKILRKYGV------------------ 91 Query: 358 EYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPE 417 +P+ Y+ +G++ WY D + + + +PE Sbjct: 92 ---------------NVPYIYACDGQK-----------WYMQNLDANTVETQVERFLKPE 125 Query: 418 ELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGK 477 E+ + ++ L LR YQ+ AV+ + + + G++ +L+ MATGTGK Sbjct: 126 EV----------SVTLNPVSSSINALDLRNYQKIAVQQIITSFLSGKKRMLVEMATGTGK 175 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 T +A + +L+ + K +L+LVDR SL Q F ++I+ L+ Sbjct: 176 TEVVMAAIAKLLDEGKVKNVLYLVDRDSLATQTYQRFNA------RLGDKYNIRKLSGDI 229 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 + S I ++TVQ L + + + IV+DEAHR Y D Sbjct: 230 NDLSADIIISTVQMLY--VDEKFKLFNSDHFQLIVLDEAHRSYYGD-------------- 273 Query: 598 DYVSAYRRILDHFD-AVKIALTATPAL----HTVQIFGEPVYRYTYRTAVIDGFLIDQDP 652 + +++ +F+ A + LTATP + FG P++RYTY V DG+L D Sbjct: 274 -----WHKVVQYFNKAAVLGLTATPKIDKDVDNFAYFGYPIFRYTYSRGVKDGYLADTIY 328 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVC 712 + +T G++ + DF+ D + + IP N + Sbjct: 329 -YKFLTNVDIYGIH---------------------DLGYDFDPNDLGKKVDIPMRNELIA 366 Query: 713 NEL---TNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKK-KYPQLEHDAIIKITGDAD 768 + N+ + +K +VF + HA+ + + + ++ +I Sbjct: 367 EKYFEAINFKETKELKKAIVFAASIKHAENLRLAFIRKYNELMGYSPDNAEAEEIFRSIH 426 Query: 769 KDARKVQTMITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 + ++ F + + TVDLL+TGVD P + IV R +SR+LY QMKGR Sbjct: 427 SAIPNHEELVREFQSPNSRIKVAFTVDLLSTGVDAPDVEVIVMARPTKSRVLYLQMKGRG 486 Query: 828 TRLCPEVN--KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITE 885 TR+ E N K F + D VD + E Sbjct: 487 TRIYKEGNKVKDKFYLIDFVDTWRL--------------------------------ENE 514 Query: 886 ADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASR 945 D E ++ + + I L + T K+ + ++ ++ ++ Sbjct: 515 EDKPITNEDIVKEEEEEEKEISELMGSTEEPQRTTAKKEVKREQKREEMVILDIPVSIVY 574 Query: 946 LREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQ 1005 P + + + ++K + + I + Sbjct: 575 AEVITPENFKNELKGISEQV--VRQVKAYLQAQEEVQIKKTQFETA-------------- 618 Query: 1006 DFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETR 1065 + +FD +++ + L L EL+ + + Q E L+ + E Sbjct: 619 --VRSFDYFYRKNG------------GKTLNENYLKELEAFLNEQGITEDVLKDTYGEP- 663 Query: 1066 NEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKV 1125 A L + A EER + + + + E L K Sbjct: 664 ----DATLKDFVEVALGLKTFPTPEERKRNLIKEWYNKKGYPKECERLFMALYDFRKRNP 719 Query: 1126 VLDDDVFKT-GNFHRRGGKAMLQRTFDD 1152 +D F + GG + ++ F+D Sbjct: 720 NIDKKAFFNAEVVKQAGGFSKVKGCFED 747 >UniRef50_Q11QY6 Restriction enzyme type I helicase subunit; type I restriction enzyme HsdR n=39 Tax=cellular organisms RepID=Q11QY6_CYTH3 Length = 1034 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 126/886 (14%), Positives = 267/886 (30%), Gaps = 95/886 (10%) Query: 146 EVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEA 205 T +Q LE + + + + ++QK+ + + Sbjct: 2 PSQTNEQALESSIEKCLTGTSLEQLKEQKVSLHIANERRELYRAGNGYYIGSPEDFNAQF 61 Query: 206 QLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTL 265 L EK +T Q+ + + + + + +L + G D Sbjct: 62 ALDEKRFWDFLETTQQEELSKLQKQSDWKLKIIERLNYTVKKYGILRLFRKGLDIDDAHF 121 Query: 266 RF---------SKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN 316 S+ R N+ + D VLFV P A +E K + Sbjct: 122 TLLYPLPLASSSETVRTNFESNQFSVTRQLRYSLINTKEEIDMVLFVNGLPFATMELKNH 181 Query: 317 NIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPF 376 A+++ +Y D + + LL + +G F +PF Sbjct: 182 WTGQNAKVHGQNQYKTKRD---INQPLLNFGRCIVHFAVDTDEAYMTTRLNGNDTFFLPF 238 Query: 377 CYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFAD 436 R + K T M + + + + ++ + + Sbjct: 239 NLG-----QREPLFGKGNPVNPFGHKTSYMWEEI---FTRKSIANIIQHFVRFDGKETDP 290 Query: 437 NPGMSELGLRYYQEDAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLIQSQR- 493 + RY+Q D VR + K Q L+ + G+GK+ + ++LI++ Sbjct: 291 LSKKTLYFPRYHQLDVVRKLVDDASKKGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPE 350 Query: 494 --------------FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE 539 F ++ + DRR L +Q ++ + + K L + E Sbjct: 351 SDNLPGSKGVSNPLFDSVIVVTDRRLLDKQIRENIKEFSEVKNIVAPAYSSKELKESL-E 409 Query: 540 DSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF------ 593 KI + T+Q + + +++DEAH T ++ Sbjct: 410 SGKKIIITTIQKFPFIVDGIAD--LSDKRFAVIIDEAHSSQSGTSAGTMNQVMGNAAGDA 467 Query: 594 ------RSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFG--------EPVYRYTYR 639 Q + A R +A +A TATP +T++ FG +P + Y+ + Sbjct: 468 TEDEEIDPQDKILEAMRARKMRGNASYLAFTATPKNNTLERFGVKQEDGKYKPFHLYSMK 527 Query: 640 TAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFN 699 A+ +GF++D + + E + Q ++ ++ Q Sbjct: 528 QAIEEGFILDVLANYTTYKSYYEIEKSIEDNPLFETVKAQKKLRTYVEQNKQTIATK--- 584 Query: 700 RGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLE--- 756 +L N G K +V + A L+ ++ + Sbjct: 585 ----ADIMLDHFMTKLVNTKRLKGKAKAMVATQSIESAINYYFALKKLLDEQGNPFKIAI 640 Query: 757 ------------------HDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTT 798 +D + D + I RF ++V + T Sbjct: 641 AFSGVKKIKGIEYTEDSLNDFPAHLDTAKPSDPGYISDKIARFVNMDEYRMLVVANKYLT 700 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNK--TSFKIFDCVDIYSTLESVDT 856 G D P + + +K++ ++ Q R R ++ K I D + ++ Sbjct: 701 GYDQPKLTAMYVDKKLQG-VIAVQALSRLNRSADKLGKKTEDLFILDFYNTTEDIKKAFD 759 Query: 857 --MRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVA--KLQRIIGLATF 912 + ++ L ++ + + E + + V +L I+ +A Sbjct: 760 PFYTATSLSKATDINVLHELKSNLDDTGVYEWSEVEDFVEKYFKGVNAQELSPIVEVAAE 819 Query: 913 NRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVF 958 + + +D + + ++ + AS + + W + Sbjct: 820 RFNVTLELDDKAKADYKIKAKHFVKIYGQMASIMHYEVQAWEKLFW 865 >UniRef50_A6P0G5 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A6P0G5_9BACE Length = 1045 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 141/1026 (13%), Positives = 302/1026 (29%), Gaps = 203/1026 (19%) Query: 170 AQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEI 229 + ++ L+ A+ T AQ +E+ L+ Q +E+ A ++ Sbjct: 46 SYREILLTRYFRQALQRLNPWLTSAQMDEAQKKMESHLS---TASLMQINEEKYALIRDG 102 Query: 230 TDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKD 289 ++R +EE+ +ID Q PE AI E D Sbjct: 103 ISVTVQRPGGRTEEKKAAVIDFQ-------------------HPENNHFLAIKELKIHGD 143 Query: 290 ETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARL-NESYRYSKCFDNGFLRETLLEHYS 348 + D V FV P+ VE K+ ++DV + Y + F Sbjct: 144 --LYRRRTDIVGFVNGIPLLFVELKKTSVDVEEAYTHNYTDYLDTIPHLFYYNA------ 195 Query: 349 PDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRN--- 405 F +NG E + ++ + + Sbjct: 196 ---------------------------FLILSNGVEAKVGTLGSKYEFFHEWKRLSEQET 228 Query: 406 ----MSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQE----DAVRAVE 457 + L + E L++L + + +++ R +Q +AV+A E Sbjct: 229 GSVALETMLRGICKKENFLDLLENFILFDHS----GGRTAKILARNHQYLGVNEAVKAYE 284 Query: 458 KAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQS-QRFKRILFLVDRRSLGEQALGAFED 516 + + + G+GK+ + + + ++ + I+ L DR L +Q FE+ Sbjct: 285 ARKLNNGKLGVFWHTQGSGKSYSMVFLAQKIRRKFAGSPTIVVLTDREELNKQISDTFEN 344 Query: 517 TRINGDTFNS---IFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVV 573 + G T S + L K + +Q K EP+ I+ Sbjct: 345 CGLLGKTKASQFIATSGEDLIQKL-SGNPSFIFTLIQKFNKAD---PEPIYPDHDILIMS 400 Query: 574 DEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH----TVQIF 629 DEAHR + +L A +I TP L T + F Sbjct: 401 DEAHRSQNG---------------IFADNMTALLP--TASRIGFAGTPLLSNDNITARTF 443 Query: 630 GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLED 689 G + Y ++ AV DG + + + + ++ D D Sbjct: 444 GGYISVYDFKRAVEDGATVPLYYENR------GDKIADLHNPEITDRILDAIERADLDVD 497 Query: 690 DQDFEVADFNRGL---VIPAFNRAVCNELTNYL-DPTGSQKTLVFCVTNAHADMVVEELR 745 Q+ +F + + ++ + + D S K + C+ + + + Sbjct: 498 QQEKLEREFAKEIHLLTAQQRLESIAKDFVGHYSDLWTSGKAMFVCLNKVTCVRMYDLAQ 557 Query: 746 AAFKKKYPQLEHDAIIK--------------------------------------ITGDA 767 + ++ +LE + + Sbjct: 558 KYWAEEIARLEKEIKCATQQEAQELNRKLEWMKETEMAVVISQEQNEIQTFQKWGLDIKT 617 Query: 768 DKDARKVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 + + + + F P +V + TG D+ + + + +++ L Q R Sbjct: 618 HRQKMEKRELDKEFKDPSNPLRVVFVCAMWLTGFDVKCLSCLYLDKPLKAHTL-IQTIAR 676 Query: 827 ATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVV------RPKVELQTLVNEITD--- 877 A R+ K++ I D + I L V P V+ + L+ I D Sbjct: 677 ANRVAE--GKSNGLIVDYIGIVKALRKALADYTANVGGQGGADPTVDKEELIARILDTIS 734 Query: 878 -------------SETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSET-IDKQ 923 + + + + + + + L+ T+ + Sbjct: 735 AAKDYLLQHDFRLQDLVDGKDFEKLALLQKAANAVSGTLEERKQFQTYATELVRLMKYAD 794 Query: 924 VRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPI 983 + + + + F +++ + ++ ++ I+ ++ + + Sbjct: 795 RQDVSSISRKEYEAIVAIFHELQKKRKSASNVDLMVEINSIISEYVQVDAPGEGIVPSRQ 854 Query: 984 FLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQ----PALQAVINRPRDL---- 1035 F + ++ + L+ D L+Q + P R + + Sbjct: 855 FDISKIDFDLLRREFARVKKKNLILKDLDDLIQERLDKLLFSNPQRINYYERYQQIIEDY 914 Query: 1036 -----------TRKGLVELQEWFDR-------QHFEESSLRKAWKETRNEDIAARLIGHI 1077 T L++L D+ + F + E+++ + I I Sbjct: 915 NSEQNRATIEKTFMDLIDLANSMDQEEQRYVREGFSSDEELSLYDLLFLENLSKQDIQKI 974 Query: 1078 RRAAVG 1083 ++ AV Sbjct: 975 KQVAVD 980 >UniRef50_A5WEH4 Type I site-specific deoxyribonuclease, HsdR family n=31 Tax=cellular organisms RepID=A5WEH4_PSYWF Length = 1107 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 132/905 (14%), Positives = 268/905 (29%), Gaps = 108/905 (11%) Query: 262 SKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDV- 320 S T++ E + D V FV P+ V+EAKR + + Sbjct: 129 SPTIKLIDWDNIHNNRYHVTEEMVVQNSDATGNVIPDIVCFVNGLPLVVIEAKRPDSNNP 188 Query: 321 -----PARLNESYRYS--KCFDNGFLRETLLEHYSPDE-VHEAVPEYETSWQDTSGKQRF 372 +++ R K + F LL + E ++ E W ++ Sbjct: 189 HKSTNSQAISQHLRNQGQKYIPHLFAYSQLLLAINGYEGLYATCNTPEKFWAKWIEEELE 248 Query: 373 KIPFCYSTN------------GREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELL 420 + F N + + + + + RP+ LL Sbjct: 249 EAEFKQLKNQPVHPDQLAALFAHRKPRDKQEYLSLVQSGQLTVTDQDRLIISLLRPDRLL 308 Query: 421 EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEI-----LLAMATGT 475 +M + ++ RY Q ++A+ K + + + ++ TG+ Sbjct: 309 DMTRFYTLF-------DSRAGKIVARYQQVFGIKALIKRVSQLDDKGSRAGGVIWHTTGS 361 Query: 476 GKTRTAIAMMFRL--IQSQRFKRILFLVDRRSLGEQALGAFEDTRI---NGDTFNSIFDI 530 GK+ T + + L ++ R+ + DR L Q F Sbjct: 362 GKSFTMVFLSKALIWLEDLAKCRVFVVTDRIDLENQIARTFISAGALSDKDKAMAKALSG 421 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE 590 + L K + + +I + + Q E + ++VDE HR Sbjct: 422 RDLAKKVGQGNERIIFSIINKFG-AAAQYPEFYNPSENIIVLVDEGHRSQNGANNIL--- 477 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATP---ALHTVQIFGEPVYRYTYRTAVIDGFL 647 ++ L +A IA T TP T FG+ ++ YT + AV D + Sbjct: 478 ------------MQKALP--NAAFIAFTGTPLLKDDKTENKFGKIIHSYTMQQAVADKTV 523 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAF 707 +I N + +++ Q + + F + + Sbjct: 524 TPLLYEERIPELNTNDVAIDKWFDRIT----QKLTTEQKADLKRKFAKK--GQVYQVEGR 577 Query: 708 NRAVCNELTNYLDPTGSQ--KTLVFCVTNAHADMVVEELRAAFK-----KKYPQLEHDAI 760 + ++++++ Q K + C + A A + L K P + Sbjct: 578 IELIAHDISDHFQNFKQQGLKGQLACDSKASAIRYKQALDNIGKVTSVVAMSPPDTREGH 637 Query: 761 IKITGDADK-----------------DARKVQTMITRFNKERLPNIVVTVDLLTTGVDIP 803 ++ ++ D + + +I F+++ P+I++ VD L TG D P Sbjct: 638 TEVDVESKDIVQNWWMQHVAPNYGMDDVQYTKDIIDAFSQDDGPDIMIVVDKLLTGFDEP 697 Query: 804 SICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVR 863 + + ++S L Q R RL +K + D I L++ + Sbjct: 698 KNTVLYIDKPLKSHNL-IQAIARVNRLH--SHKQFGYLIDYRGILKELDTTIEDYQNLAE 754 Query: 864 PKVE--LQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETID 921 + + S + + + VA Q L + + D Sbjct: 755 RTQGGFDIDDLAGMYSSMQSEYKKLPMLHSKVWAIFADVANKQDGHALRQALSPKMQQRD 814 Query: 922 KQVRRLDELCQDAAGVNFNGF----------ASRLREKGPHWSAEVFNKLPGFIARLEKL 971 + + +D F AS + ++ K L K Sbjct: 815 GMIVDTNLKKRDDFYAALTEFTNTMKVALQSASYFDDTFFDKKRNLYKKDLKAFIELRKQ 874 Query: 972 KTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINR 1031 + N + D + K + G + ++ + Q N+ Sbjct: 875 VREDANETIDFDEYEDDIRNLLNKHIAGLEVKEPEGAYLVGNMGKEVKPEQLNDDEARNQ 934 Query: 1032 PRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEE 1091 +T + ++ + + K K+ ED A +++ + FE+ Sbjct: 935 TDKITSRVTKMIEVDLADDPYAQEHFSKLLKQA-IEDAKAMFDAPVKQYMM---FADFEQ 990 Query: 1092 RVDHA 1096 V Sbjct: 991 DVKAR 995 >UniRef50_C7QLU3 Type I site-specific deoxyribonuclease, HsdR family n=6 Tax=Bacteria RepID=C7QLU3_CYAP0 Length = 986 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 121/914 (13%), Positives = 270/914 (29%), Gaps = 104/914 (11%) Query: 259 QADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNI 318 + L P + E+ T + G D V + PI V+E K + Sbjct: 123 EKRELDLTLINYEDPTQNEYEVTEEYYTHNGKDG--IREDIVFLINGIPILVIECKNADK 180 Query: 319 --DVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPF 376 + +++ RY + F+ + L V Sbjct: 181 IEGIALGIDQIRRYHREAPELFVPQMLFTATEAIGFSYGVTWNLVRR------------- 227 Query: 377 CYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFAD 436 I+ + + + P LL+ L + + Sbjct: 228 -----------------NIFNWKDEQIGQLENKIKTFCHPYILLKFLLNYIIFAEKDET- 269 Query: 437 NPGMSELGLRYYQEDAVRAVEKAIVKGQQ-EILLAMATGTGKTRTAIAMMFRLIQSQR-- 493 + + L+ +Q A+ V + ++ L+ G+GKT T I + L ++ Sbjct: 270 ---LQKFILKQHQTIAIEKVIQRCHDTEKSRGLVWHTQGSGKTFTMIKIAEMLFKAPDSE 326 Query: 494 FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV 553 I+ ++DR L +Q L + +N IK L + D I + + Sbjct: 327 KPTIILIIDRNELQDQLLRNLNNLGVN--NIRHANRIKTLIELLENDYRGIIITMIHKF- 383 Query: 554 KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV 613 + + + +++DEAHR D A Sbjct: 384 ---REMPTDVNLRNNIYVLIDEAHRTTGGDLGTYLMAGLPH-----------------AT 423 Query: 614 KIALTATP------ALHTVQIFG-----EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQ 662 I T TP T + FG +++Y+ ++ DG + + Sbjct: 424 IIGFTGTPIDKTNQGKGTFKTFGTDDEKGYLHKYSIAESIEDGTTLPLYYNLAPNEMLVP 483 Query: 663 EGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT 722 + + + ++ D+ + +F +G V + + Sbjct: 484 AEIMDQEFLDLVETEGINDIAELNKILDRAVNLKNFLKG---DQRVDQVAKYVAQHYTKN 540 Query: 723 ---GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD---ADKDARKVQT 776 K + V + L +Y + + T D D + + Sbjct: 541 VEPLGYKAFLVAVDRPACAKYKQALDRYLPLEYSAVVYTGNNNDTEDLKTHHIDDKTEKQ 600 Query: 777 MITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN 835 + F K P I++ + L TG D P + + + +R L Q R R Sbjct: 601 IRKNFAKFGEYPKILIVTEKLLTGYDAPILYAMYLDKPMRDHTLL-QAIARVNRPYENET 659 Query: 836 ----KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSF 891 K + D V I+ LE + V V+ +L+ + + ++ + Sbjct: 660 EEMVKPHGFVLDFVGIFDKLEKALSFDSQEVNAIVKDLSLLKNLFKIKIEQLIKNYLTLI 719 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP 951 + ++Q V L + ++ + + DA + L Sbjct: 720 QHNFNDQDVDHLLEYFRDKERRKAFTKDYKSLEMLYEVISPDAFLRPYLNEYGTLSGIYQ 779 Query: 952 HWSAEV------FNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYD--T 1003 ++ ++ + + F++I+ + + G Sbjct: 780 VIRNAYSKRVYVDREVKRKTDKIVQNNIATTAIPTVTDFIEINAQTIETIQNKGGGKTTK 839 Query: 1004 PQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKE 1063 + +++ + + + N P L A++ R + + + + + ++R+ ++ Sbjct: 840 VINLIKSIEKTAEEN-NDDPFLIAMVQRAKAIQERFENRQTDTQETLDLLLQAVRE-NEQ 897 Query: 1064 TRNEDIAARL--IGHIRRAAVGDALKPFEERVDHALTR-IKGENDWSSEQLSWLDRLAQA 1120 + E A + A+ +A E + + + +W + + L L + Sbjct: 898 RKQEQSAKGFDSLSFFVYQALENAGIDNPEDMAQEIRQHFIENPNWKTSEGE-LRELRKN 956 Query: 1121 LKEKVVLDDDVFKT 1134 + + + D + Sbjct: 957 VTFSIYTEIDELEK 970 >UniRef50_C2CJE8 Type I site-specific deoxyribonuclease n=5 Tax=Firmicutes RepID=C2CJE8_9FIRM Length = 781 Score = 357 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 180/871 (20%), Positives = 306/871 (35%), Gaps = 127/871 (14%) Query: 233 AIKRTLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDET 291 I +SEE+ + I + + W D ++ E + Sbjct: 3 KILNKKQMSEEDIKLHYITPSII-SKWNKDKISM--------ERKITDGKINIRGNLKFR 53 Query: 292 GNQGFADYVLFVGLK-PIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPD 350 ADYVL++ PIA+VEAK N + L ++ Y++ D Sbjct: 54 EKAKRADYVLYLNNNNPIAIVEAKDNKKSLSHGLQQAMTYARMLD--------------- 98 Query: 351 EVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKAL 410 +PF YS+NG G D + +L Sbjct: 99 -----------------------LPFAYSSNG----------DGFMEHDFLTGKERELSL 125 Query: 411 PEWHRPEELLEMLGSEPQKQNQWFADN---------PGMSELGLRYYQEDAVRAVEKAIV 461 E+ EEL+ SE K + + RYYQ A+ + + I Sbjct: 126 EEFPSEEELINRFKSEKNKGRGLSEEEEKIINQPYYSSQNTYPPRYYQRIAINRILEEIA 185 Query: 462 KGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING 521 KG+ +LL MATGTGKT TA +++RL+QS + K+IL+L R L +Q + D Sbjct: 186 KGKDRLLLVMATGTGKTYTAFQIVYRLLQSGQKKKILYLAYRNILVDQTIS--GDFAPLK 243 Query: 522 DTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS--DEPMPVARYDCIVVDEAHRG 579 + + K D S +++ + Q L+ + E +D I+VDE HRG Sbjct: 244 KVIHKVNFSKD--DPTTITSHQVYFSLYQQLIGEDGKEHFSELFRPDFFDLIIVDECHRG 301 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPALH----TVQIFGEPVY 634 + S++RRIL++F A +I +TATP FGEP+Y Sbjct: 302 SAKED----------------SSWRRILEYFKSASQIGMTATPKETKYVSNSHYFGEPIY 345 Query: 635 RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFE 694 Y+ R + DGFL + GE Q + +ED + + Sbjct: 346 SYSLREGIEDGFLAPFKVI----------NITTDIGESWRPYKGQLDKSGKEIED-RIYN 394 Query: 695 VADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFCVTNAHADMVVEELRAAFKKKYP 753 +D++ +VI V E+T YL T KT+VF T A+ + L Sbjct: 395 NSDYDYNIVIEDRTYQVAKEITAYLKATDRMAKTIVFTPTEEAAERMRVALVN-LNNDLV 453 Query: 754 QLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 + D ++ITG + K+ I+ + P I T LL+TGVD + IV Sbjct: 454 KENPDYCVRITGSDEYGKSKLDYFIS--ISSQYPVIATTSKLLSTGVDTKMVKLIVLDTM 511 Query: 814 VRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVN 873 + S ++Q+ GR TRL + KT F + D ++ D P+++ + + Sbjct: 512 LNSMTEFKQIIGRGTRLREKEGKTHFVLMDFRNVSRLFADPDWDGPLIIDDGFNPKKPND 571 Query: 874 EITDSETYKITEADGRSFAEHSHEQ-------------LVAKLQRIIGLATFNRDRSETI 920 + T G + + ++ + +++ + E I Sbjct: 572 KEAHEPPETYTTGGGINRSVPIIDKNGLKVKIINKTVSIYDTNSKLLRCESIIDYTKENI 631 Query: 921 DKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLE-KLKTDINNLN 979 + LD+ + + R + E K + I Sbjct: 632 RGEYANLDDFIRT-WRRDSKENIVRKMLEEVGIDIEELKKEQDMEDVDDFDFILHIAYDK 690 Query: 980 DAPIFLDIDDEVVSVKSLYGDYDTPQDFLEA-FDSLVQRSPNAQPALQAVINRPRDLTRK 1038 A + + V +D LEA D + + ++ + P + Sbjct: 691 KALTRKERAENVKKHDFFSKYNGLARDILEALLDKYMNQGIEEITSMDVLKLDP-FIKYG 749 Query: 1039 GLVELQEWFDRQHFEESSLRKAWKETRNEDI 1069 + + F + ++ + N ++ Sbjct: 750 KPSRIIKEFGGRDMYIEAINNLKEAIYNNEV 780 Score = 48.6 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 65/204 (31%), Gaps = 20/204 (9%) Query: 971 LKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVIN 1030 + + ++ + + I ++ VS+ + ++ ++ Sbjct: 587 INRSVPIIDKNGLKVKIINKTVSIYDTNSKLLRCESIIDYTKENIRGE----------YA 636 Query: 1031 RPRDLTRKGLVELQEWFDRQHFEE--SSLRKAWKETRNEDIAARLIGHIRRAAVGDALKP 1088 D R + +E R+ EE + + KE ED+ I A Sbjct: 637 NLDDFIRTWRRDSKENIVRKMLEEVGIDIEELKKEQDMEDV--DDFDFILHIAYDKKALT 694 Query: 1089 FEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVV---LDDDVFKTGNFHRRGGKAM 1145 +ER ++ + + ++ L+ L + + DV K F + G + Sbjct: 695 RKERAENV-KKHDFFSKYNGLARDILEALLDKYMNQGIEEITSMDVLKLDPFIKYGKPSR 753 Query: 1146 LQRTFDDNLDTL--LGKFSDYIWD 1167 + + F + + + I++ Sbjct: 754 IIKEFGGRDMYIEAINNLKEAIYN 777 >UniRef50_A3J6X1 Type I restriction-modification system restriction subunit n=4 Tax=cellular organisms RepID=A3J6X1_9FLAO Length = 992 Score = 357 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 147/1010 (14%), Positives = 315/1010 (31%), Gaps = 89/1010 (8%) Query: 166 AEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTE-QERKA 224 E+ ++ + L + E + + + A + E + + ++ Sbjct: 6 KEIHVEEHIVKYLVDHGGFHEVHASAYDKELCLIPSEAIAFIQETQPDKYNLLKLEQYGN 65 Query: 225 YHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKA---I 281 E I +T S++++ L+ +++ G Q D + + PE + Sbjct: 66 KVDEKIVANIAKTYKDSKDKTLDLLRNKVKDRGVQFDMVYFQPANDKSPEHQEWYKKNRL 125 Query: 282 AEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRE 341 A K N D VLFV P+ +E K + N +Y + D E Sbjct: 126 AVVRQLKYSAKNNNSIDLVLFVNGIPVVTLELKNE-LTGQNHHNAIKQYIQDRDPKG--E 182 Query: 342 TLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVR 401 LE E + GK F +PF G + + + DV Sbjct: 183 PFLEFKRCLVHFAVGTEKVFMTTELKGKGTFFLPFNQ---GLDNFNPDGFATSYLWEDVL 239 Query: 402 DTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIV 461 ++ L + + LE E + + L R++Q AV+ + A+ Sbjct: 240 TKDSLLDLLQNYINIQTDLE---KEYDTVTKGLKEKKSTKLLFPRFHQRRAVQRLLHAVK 296 Query: 462 KGQ--QEILLAMATGTGKTRTAIAMMFRLI--------QSQRFKRILFLVDRRSLGEQAL 511 + + L+ + G+GK+ T + +RL + ++ + DRR+L +Q Sbjct: 297 EEGVGKNYLIQHSAGSGKSNTITWLAYRLAGFYQNENDDKALYDSVIVVNDRRALDKQIQ 356 Query: 512 GAFEDTRINGDTFNSIFD--IKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYD 569 I + K E+ +I + T+Q + R Sbjct: 357 NNIRQLDNTPGLVAYIDENKTAQDLKKAIEEGKRIIITTIQKF--PVISETIASMPERKY 414 Query: 570 CIVVDEAHRGYILDKEQTEGELQFRSQ-----------LDYVSAYRRILDHFDAVKIALT 618 +++DEAH + + + + +R + A T Sbjct: 415 AVIIDEAHSSQSGEAARHLKKSLSLEEAEKEDVSEDLDDIIADEIKRKGKQPNISFFAFT 474 Query: 619 ATPALHTVQIFGEPVY-------RYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLS-KG 670 ATP T ++FG + YT A+ +GF+ D R + Sbjct: 475 ATPKPKTEELFGRLIDGKIKAFDTYTMEQAIKEGFIRDVLKNYMSFKRYYKIIKRTEIDD 534 Query: 671 EQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVF 730 ++ E+ + + D E ++I F NE+ G + +V Sbjct: 535 KEYEKKKTVRLLGSYVDLQDHAIERK---ARIMIEHFVSKTQNEI------QGKARAMVV 585 Query: 731 CVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERL---- 786 + HA + ++ T + + + + ++ Sbjct: 586 TKSRLHAVRFKRKFDEIMQEMKLPYGALVAFSGTVKDSETNEEYTEISMNQLQGKIAIPE 645 Query: 787 ------PNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFK 840 ++ + TG D P + + +K+ Q R R K S Sbjct: 646 AFKLPQFRFLIVANKYQTGFDEPMLHTMFVDKKLGGAS-TVQTLSRLNRTMR--GKESTM 702 Query: 841 IFDCVD----IYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSH 896 + D V+ + + + + + +L + +++ + + Sbjct: 703 VLDFVNDPELVQKDFQYYYGENFMEEDNQTDPNSLYTVQSKIDSFNLIYQNEVEAFADIF 762 Query: 897 EQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAE 956 + +++ + +R E K+ +++ + + F S++ + Sbjct: 763 FRKGNNYEKLNPILKTVTNRYEAELKEEDQINFKSEVQTFLKLYRFLSQIITFTDVELEK 822 Query: 957 VFNKLPGFIARLEKLKTDINNLNDAPIFLD-IDDEVVSVKSLYGDYDTPQDFLEAFDSLV 1015 + L + L +KT++ + LD + L + + + Sbjct: 823 YYVFLTALLKMLPYIKTNLPLDVLGEVELDSYKIQHQYTTDLALVSENGEMYGMTPGGAS 882 Query: 1016 QRSPNAQPALQAVINRPR-----DLTRKGLVELQEWFDR--------QHFEESSLRKAWK 1062 + + L +I DLT + VE Q+ D+ F ++ R + Sbjct: 883 GKEEDELDMLTNIIKVLNDTFGIDLTDEDKVEFQKMKDKIYSNEELMSFFNRNNSRDNIQ 942 Query: 1063 ETRNEDIAARLIGHIRRAA-VGDALKPFEERVDHALTRIKGENDWSSEQL 1111 + +E+I L+ I + + L E+RV+ +I + + Sbjct: 943 DKFSEEIDNELLNFINTKLELYNKLS--EDRVNLMFKKIWFNDLYDKRVR 990 >UniRef50_A6UXD8 Type I site-specific restriction-modification system, R subunit n=9 Tax=Gammaproteobacteria RepID=A6UXD8_PSEA7 Length = 1067 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 152/967 (15%), Positives = 291/967 (30%), Gaps = 125/967 (12%) Query: 262 SKTLRFSKGARPEPGVNKAIAE--WPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNID 319 + R + + + E + E D VLFV P+A +E K Sbjct: 104 DHGMNPDTLKRYQCNRLRVVQEVSYSPHCREGEYNPRLDLVLFVNGIPVATLELKSEFKQ 163 Query: 320 VPARLNESYRYSKCFDNGFLR--ETLLEHYSPDEVHEAVPEYETSWQD-TSGKQRFKIPF 376 YRY + + R E LL VH AV + E + +GK+ F +PF Sbjct: 164 SVENAKRQYRYDRPVKDPLTRKPEPLLTFKRGALVHFAVSQDEVAMTTQLAGKETFFLPF 223 Query: 377 CYST-NGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFA 435 + +G S T + + L +P+ L++LG Q Sbjct: 224 NLGSLDGGAGNPPAPDDSQY------ATGYLWQRL---FQPDAWLKVLGRFLHLQKSVKE 274 Query: 436 DNPGM-----SELGLRYYQEDAVRAVEKAIVKG--QQEILLAMATGTGKTRTAIAMMFRL 488 D G + + RY+Q + V + + + L+ + G+GK+ + +L Sbjct: 275 DADGKRVTKETLIFPRYHQWEVVNRLIETTRNEGPGKRYLIQHSAGSGKSNSIAWTAHQL 334 Query: 489 IQSQR------FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE--- 539 F ++ + DR L +Q I G K + Sbjct: 335 ASLYDAEGQRLFNSVIVITDRTVLDKQLQDTIYQFEHAQGVVKCITRDIGSQSKSEQLAE 394 Query: 540 ---DSTKIHVATVQSLVK--RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGE---- 590 + T+I + T+Q+ L + Y ++ DEAH + Sbjct: 395 ALAEQTRIIIVTIQTFPALFDALDKYPKLASGHY-AVIADEAHSSQTGSSASKLKQILGS 453 Query: 591 --LQFRSQLDYVSAYRRILDHFDA--------VKIALTATPALHTVQIFGEP-------- 632 + + + +LD A A TATP T+++FG Sbjct: 454 DAVLGKEGDAEEISAEELLDAAVAARAPNERISYYAFTATPKAKTLELFGRVPDPTLPAS 513 Query: 633 -------VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIND 685 + Y+ R A+ +GF++D + + E+V+ + ++ Sbjct: 514 ADNKPEAFHLYSMRQAIEEGFILDVLQNYTTYSTAWKIAHPDGDDEEVDSKKARMKLARW 573 Query: 686 TLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDP--TGSQKTLVFCVTNAHADMVVEE 743 + + + G K +V + A Sbjct: 574 VRLHPYNINQK-----------VEVIVGHFRANIRHLLGGQAKAMVVTSSRQEAVRYQLA 622 Query: 744 LRAAFKKKYPQLEHDAII-------------KITGDAD--KDARKVQTMITRFNKERLPN 788 ++A K+ H + ++T + + + F + N Sbjct: 623 VQAYVKQMGYTDVHPLVAFSGSVLPDGVIPEEVTESSSLLNPGLNGRDLAEAF-DTQDFN 681 Query: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV--- 845 +++ + TG D P +C + +K++ + Q R R +K +F I D Sbjct: 682 VMIAANKYQTGFDQPKLCAMYVDKKLQG-VDCVQTLSRLNRTF-GDSKPTF-ILDFFNDP 738 Query: 846 -DIYSTLESVDTMRPVVVRPKVELQ-TLVNEITDSETYKITEADGRSFAEHSHEQLVAKL 903 DI T + +L L ++ Y E + A + +KL Sbjct: 739 QDILDAFLPYYTKAELTDVTDPQLIYDLQKKLDAEGIYHWEEVAAFALAFFDPKAAASKL 798 Query: 904 QRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPG 963 A + + ++ R+ + A N + + E + E ++L Sbjct: 799 SYYCAPAKERFAKRYKLAQESRQHALDFKRTAEQNGDSAGVKKAEAAVKEAGEQVDQLDL 858 Query: 964 FIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQP 1023 F L+ L+ + +D + +Y + P ++ D Q + Sbjct: 859 FKKNLQSFVRLYEFLS---QIIPYEDRELEQLCVYAKHLHPLLRVDRLD---QEDVD-VG 911 Query: 1024 ALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVG 1083 LQ R L +E D + L + + +I + Sbjct: 912 ELQLTHYRLTKRAEHQLRLSEEQGDYGLKPPTGLGSGKPHDPEKKRLSEIIEALNDIFGA 971 Query: 1084 DA--------LKPFEERVDHALTRIKGENDWSSEQ-------LSWLDRLAQALKEKVVLD 1128 + L R+ + N+ S EQ LD + A+ + + Sbjct: 972 EVSDEDQLQFLTGIANRISRQEDVMAQVNNHSVEQVMHGLFPKRVLDTVLDAMTDNEKMS 1031 Query: 1129 DDVFKTG 1135 +V Sbjct: 1032 LEVLDNE 1038 >UniRef50_D0S8M3 Type I site-specific restriction-modification enzyme n=2 Tax=Acinetobacter RepID=D0S8M3_ACIJO Length = 959 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 135/984 (13%), Positives = 288/984 (29%), Gaps = 113/984 (11%) Query: 165 QAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKA 224 Q+E + + + + L G + + E + L+ L+ Q+ N + + ++ Sbjct: 4 QSEYQLENELIAQLKGLGYSIVTIKDE-----RQLLSNLKTQIERANGLASMSETEWKQV 58 Query: 225 YHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEW 284 T +R NL L + + F P + + + Sbjct: 59 ISFLNTGTVFERAKNL----------RDLFPVKFDDGTSKHLFFLSDDPSKNIYQVTNQI 108 Query: 285 PTGKDE-TGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCF----DNGFL 339 + G D L V P+ +E K+ +++ N++ RY + F Sbjct: 109 TIDHRDYNGRTSRFDVTLLVNGLPLVQIELKKRGMEIAEAFNQTQRYIREAYWAGQGLFG 168 Query: 340 RETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRD 399 L + T G E+ + Sbjct: 169 FIQLFVISNGANTRYYSN---------------------GTTGIEFAFPWADVHNKHINE 207 Query: 400 VRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKA 459 + D + + L +ML S + LR YQ AV+ + + Sbjct: 208 IVDFAE------AFFNQQHLTQMLTQYMVLL------ETTKSLMVLRPYQIYAVQKIVEH 255 Query: 460 IVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRI 519 + Q + TG+GKT T+ ++Q +++LF+VDR L Q F Sbjct: 256 VQNSNQNGYIWHTTGSGKTLTSFKASQIIMQMPDVEKVLFVVDRNDLDTQTSREFNAF-- 313 Query: 520 NGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYD----CIVVDE 575 ++ +S + L + + K+ V T+Q L + + + DE Sbjct: 314 KAESVDSTDNTSTLVKQLDQRHDKLIVTTIQKLNRAISTDRYLESIDYLKNKKVVFIFDE 373 Query: 576 AHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYR 635 HR + Q + F + + I + K L L T +F + +++ Sbjct: 374 CHRSQFGETHQNIKK-FFSNAQMFGFTGTPIFEKNSQSKAGL----KLTTDYLFNQCLHQ 428 Query: 636 YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN-DTLEDDQDFE 694 Y A+ D ++ + L + VE I Q N LE + Sbjct: 429 YVIVDAIRDRNVLQFQIDYRGKFTVKGMQNNLDYEDDVEGIDTQELYDNPQRLEMIARYI 488 Query: 695 VADFNRGLVIPAFNRAV----CNELTNYLDPTGSQK-------------------TLVFC 731 V + F + LT Y + + +F Sbjct: 489 VDTHDTKTKNREFTAMFCVSSVDTLTQYYELFEKVQAEKQQQDEAEGRLFKPLTIATIFS 548 Query: 732 VTNAHADM------------------VVEELRAAFKKKYPQLEHDAIIKITGDADKDARK 773 A + + R + A Sbjct: 549 YGANEAVENNDQNGLIQEESTDAPNQINQSSRDKLDRYIANYNAQFGTNYNSGDGFYAYY 608 Query: 774 VQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPE 833 I K++ +I++ V++ TG D + + + ++ L Q R R+ + Sbjct: 609 RD--IADRVKKKQIDILLVVNMFLTGFDSKPLNTLYVDKNLKYHGL-IQAFSRTNRVYND 665 Query: 834 VNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAE 893 K I ++ + + K L +EI + + + Sbjct: 666 K-KPFGNIISFRNLKRATDEALALFSNKEARKTVLVQSFDEIKQDYEQAVEKLLRITPDY 724 Query: 894 HSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHW 953 + + LV + Q++ + F + Q++ E QD ++ FA+ + Sbjct: 725 QTVDDLVTEDQQLEFIKAFRE--VMRYNAQLQTFIEYDQDQTQLDKQHFANFASKYADLC 782 Query: 954 SAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDS 1013 A ++ L+ + ++ L+ I + ++ + + + + Sbjct: 783 RAVRKTTKKEKVSVLDDVDFQLDLLHSDRINVGYILTLLQMAVNAETDEQRKKYEAQVHD 842 Query: 1014 LVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKET-RNEDIAAR 1072 L+ + + + K + F ++ +A++ E++ Sbjct: 843 LIGSDISLHDKQDLIQKFIEENMPKMINGQSVQVAFAQFWDAEKEQAYQHFCEQENLKPE 902 Query: 1073 LIGHIRRAAVGDALKPFEERVDHA 1096 + + + P +E + Sbjct: 903 AMKQVLDNYEFNKRLPRKEELKDL 926 >UniRef50_A9FYJ9 Type I restriction-modification system restriction subunit n=1 Tax=Phaeobacter gallaeciensis BS107 RepID=A9FYJ9_9RHOB Length = 1088 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 150/1058 (14%), Positives = 287/1058 (27%), Gaps = 154/1058 (14%) Query: 188 KQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRF 247 KQ EA + RL A+ K + + A + ++ ++E + Sbjct: 40 KQVIAEATLRERLRAINPGPDGKPWLDEARLSEAVSALTRHGQRGLMEANQAVTELLLKG 99 Query: 248 LIDAQLRKAGWQA-DSKTLRFSKGARPEPGVNKAIAEWPT----GKDETGNQGFADYVLF 302 L L + W +T+R+ ++ G D D V+ Sbjct: 100 LTVEGLPE--WDGGRGQTIRYIAWDDVAANSFTVSNQFRVDCPPGHDVGKGFIIPDVVML 157 Query: 303 VGLKPIAVVEAKRNNID--VPARLNESYRYSKCFD-----NGFLRETLLEHYSPDEVHEA 355 V P+ VVEAK I + + + RY + L + + Sbjct: 158 VNGIPMVVVEAKSPGIPEPLAEAVKQLRRYHNARKAALEVDENEGAPALFASVQLLIATS 217 Query: 356 VPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHR 415 E + + +G+ + G + + R Sbjct: 218 FDEARVGCIGAGLEYYGQWKTVVGPDGKGSEDEVAKALG-----KTRLSEQERMIAGMLR 272 Query: 416 PEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQE--------- 466 P LL++L N + RY Q AV + + G+ Sbjct: 273 PAHLLDILRHYLLFMNV----GGQTIKTVCRYQQYRAVNRALERLRTGKTRVQDGEYDRR 328 Query: 467 -ILLAMATGTGKTRTAIAMMFRLIQSQRFKR--ILFLVDRRSLGEQALGAFEDTRINGDT 523 ++ G+GK+ T + M+ ++ ++ ++ + DR+ L Q ++GD Sbjct: 329 GGIVWHTQGSGKSLTMVFMIRKMRTDLDLRKFKVIMVTDRKDLQRQLSET---ATMSGDV 385 Query: 524 FNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSD-------EPMPVARYDCIVVDEA 576 L + AT+Q ++ + + +VVDEA Sbjct: 386 VELAISNSSLKRLARRKGPGLVFATIQKYRTDEDVAEVTKGPAFDVLNEDDTILVVVDEA 445 Query: 577 HRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP------ALHTVQIFG 630 HR D + +I T TP T +IFG Sbjct: 446 HRTQAGDLHANLLAALP-----------------NCARIGFTGTPIIMGEKKRST-EIFG 487 Query: 631 EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDD 690 + + +YT + A DG + + ++G L G + + + + + Sbjct: 488 DFIDQYTIKEAEADGATVPVLYEGRTAEGAVKDGATL-DGLFEDMFRGRSDEELEAIRKK 546 Query: 691 QDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKK 750 + +I R + L P G K V + A + Sbjct: 547 YATKGNILEAKELIGEKARDMLRHYVTNLLPNG-YKAQVVAYSRTAVVRYHAAFLEARDE 605 Query: 751 KYPQLEH------------------------------------DAIIKITGDADKDARKV 774 + + ++G + DA Sbjct: 606 LLAEAAALPDCDKSLDDEELCIRPAKLQALVQAWRYRDTLEKIEFAAIMSGGNNDDASWK 665 Query: 775 QT--------MITRFNKE---------RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 Q I RF K ++ +L TG D P + R +R Sbjct: 666 QWTESSAQEMRIKRFKKPLFHNDSTKADPLAFLIVKSMLLTGFDAPIEGVMYLDRSIRE- 724 Query: 818 ILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV-------DTMRPVVVRPKVELQT 870 Q R R KT + D + L+S D +V Sbjct: 725 AELLQAIARVNRT--GFGKTCGIVVDYFGVAHHLKSALSAYSDEDIDGALVSLTDQIPIL 782 Query: 871 LVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDEL 930 I + ++ D S E + L + R +D ++++ + R + L Sbjct: 783 RDRHIRVVDIFRREGLDDLSDDEKCLQVLATEKVR-AEFTVKLKDFLKSLEIVLPRPEGL 841 Query: 931 CQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLND-APIFLDIDD 989 +R R + + + ++ + P+ L + Sbjct: 842 PFVKDAKRLAYIQTRARNRFRDVAVIGSDVGAKVRKLIDDHVISLGIDPKIPPVQLTDAE 901 Query: 990 EVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPA-LQAVINRPRDLTRKGLVELQEWFD 1048 V G + A S +++ P + + R + + E + Sbjct: 902 FEDQVGQASGARAKASEMEHAIRSHIRKKLETDPVRFKKMSERLNQILDGFGHQWDEIIE 961 Query: 1049 RQHFEESSLRKAWKET--RNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDW 1106 + LR + T DI + +R EE T + Sbjct: 962 QLQAIIDELRSESQSTGETEFDIPEIYVPFLRTVL--------EEAGADENTPAQHLQAL 1013 Query: 1107 SSEQLSWLDRLAQALKEKVVL-------DDDVFKTGNF 1137 +DR+ + + D + ++ F Sbjct: 1014 HRVTQEIVDRIVDEVVANRSIWSTFKMADQENLRSEIF 1051 >UniRef50_C5VKZ0 Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Prevotella melaninogenica ATCC 25845 RepID=C5VKZ0_9BACT Length = 947 Score = 356 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 144/1006 (14%), Positives = 292/1006 (29%), Gaps = 125/1006 (12%) Query: 173 QKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQ 232 Q AL + + Q + ++ K+ E+ E T+ Sbjct: 4 QSEAALENGLIATLQQMNYEYVQIEEEKNLRTNFKSQLEKHNRKRLEEI---GRTEFTEA 60 Query: 233 AIKRTLNLSEEESRFLIDAQLRKA--GWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDE 290 ++ L E +RF +LR + + L R N+ E Sbjct: 61 EFEKILIYLEGGTRFEKAKKLRDLFPLELDNGERLWVEFLNRTHWCQNEFQVSHQIT-VE 119 Query: 291 TGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPD 350 + D + + P+ +E KR +++ N+ RY K +G L S Sbjct: 120 GRKKCRYDVTILINGLPLVQIELKRRGVELKQAYNQIQRYHKTSFHGLFDYVQLFVISNG 179 Query: 351 EVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKAL 410 +G ++ + + + + + K Sbjct: 180 VNTRYFANNP-------------------NSGYKFTFNWTDAANVPFNE------LEKFA 214 Query: 411 PEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLA 470 + L +++G + LR YQ AV + + + Sbjct: 215 TSFFDKCTLGKIIGKYI------VLHEGDKCLMVLRPYQFYAVEKILDRVKNSNNNGYIW 268 Query: 471 MATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDI 530 TG GKT T+ + + +++F+VDR L Q +E +S + Sbjct: 269 HTTGAGKTLTSFKAAQLVAELDDVDKVMFVVDRHDLDTQTQSEYEAFEP--GAVDSTDNT 326 Query: 531 KGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVAR----YDCIVVDEAHRGYILDKEQ 586 L + ++KI + T+Q L + + ++ DE HR + D + Sbjct: 327 DELVKRLH-GNSKIIITTIQKLNAAVSKQWYSRRIEEIRHARIVMIFDECHRSHFGDCHK 385 Query: 587 TEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP--------ALHTVQIFGEPVYRYTY 638 + T TP T +IFG +++Y Sbjct: 386 NIVRFFD-----------------NTQIFGFTGTPIFVENAVDGHTTKEIFGNCLHKYLI 428 Query: 639 RTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADF 698 + A+ D ++ + E + I E D F V Sbjct: 429 KDAIADENVLGFLVEYYHGNADVDNANQNRMTEIAKFILNNFNKSTFDGEFDALFAVQSV 488 Query: 699 NRGL--------VIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKK 750 + + + P + + + + + +EL+A Sbjct: 489 STLIRYYKIFKSLNPKIRIGAVFTYASNSSQDDALTGMNTGSYVSESTGEADELQAIMDD 548 Query: 751 KYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIV 809 T + + + + + P ++ + V + TG D + + Sbjct: 549 YNDMFGTSFT---TENFRAYYDDINLRMKKKKTDMKPLDLCLVVGMFLTGFDSKKLNTLY 605 Query: 810 FLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST-------LESVDTMRPVVV 862 + + L Q R R+ E K KI D+ S + + + +V Sbjct: 606 VDKNMDYHGLL-QAFSRTNRVLNEK-KRFGKIVCFRDLKSNVDASIKLFSNSNNLEDIVR 663 Query: 863 RPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQ---------LVAKLQRIIGLATFN 913 P E++ E+T + + + ++ ++ K I F Sbjct: 664 PPFNEVKKNYQELTTNFLEQYPTPSSIDLLQSEKDKKQFILAFRDVIKKHAEIQVYDEFE 723 Query: 914 RDRSET-------IDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIA 966 D ++ +D + + LD A G + E + + Sbjct: 724 EDAADLGMTEQQFMDFRSKYLDIYDTFAGGCKPSEENQTPDEDTESTETSTESGIDDIDF 783 Query: 967 RLEKLKTDINNL--------NDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRS 1018 LE L +DI N+ + P D ++ + ++ + D +Q++ Sbjct: 784 CLELLHSDIINVTYILELIADLNPYSADYKEKRTYIIDTMIKDAELRNKAKLIDGFIQQN 843 Query: 1019 PNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIR 1078 + R G +L+E + E + K + E + ++ H Sbjct: 844 VDDDRD----NFMARKQKFDGTSDLEERLNNYITTERN-NAVDKLAKEEGLDVTVLNH-- 896 Query: 1079 RAAVGDAL-KPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKE 1123 + D L K E + AL ++ ++ L R+ LK Sbjct: 897 YLSEYDYLQKEQPEIIQEALKE---KHLGLIKKRKTLTRILDRLKS 939 >UniRef50_C3XMW2 Type I restriction-modification enzyme n=3 Tax=Helicobacter RepID=C3XMW2_9HELI Length = 1027 Score = 356 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 140/924 (15%), Positives = 275/924 (29%), Gaps = 111/924 (12%) Query: 259 QADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN-- 316 + L E A+ ++ T + D V+FV P+ + E K Sbjct: 110 EQRGINLELLDFENVENNAFLALNQFVF---STKDSVRCDVVVFVNGLPLVLCELKHPLD 166 Query: 317 -NIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIP 375 N D+ + Y + F+ L + + + +Q Sbjct: 167 INADLHKAYLQIETYKEKAKELFIPNALCIISDGVDSKLGSLNADFTRFLKWQRQG---- 222 Query: 376 FCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFA 435 D+ + E +P LL+ L + + Sbjct: 223 -----------------------DMLSENTRVVDICEVLKPCVLLDFLRYFITYEQSYIQ 259 Query: 436 D-----NPGMSELGLRYYQEDAVRAVEKAIVK-------GQQEILLAMATGTGKTRTAIA 483 D +++ Y+Q AV ++ K ++ ++ G+GK+ + + Sbjct: 260 DTQGYKESKLNKKIAAYHQYYAVNKAIESARKAMQSSETNKKGGVVWHTQGSGKSLSMVF 319 Query: 484 MMFRLIQSQRFKRILFLVDRRSLGEQALGAF-EDTRINGDTFNSIFDIKGLTDKFPEDST 542 + ++ +L L DR L Q F + + + T K L +KF + Sbjct: 320 FCAKALKELNNPTLLLLTDRTDLDNQLFNTFAKSSTLLQTTPLRCESTKDLKEKFTQRKG 379 Query: 543 KIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSA 602 I +T+Q + + E + ++ DEAHR + E Y Sbjct: 380 GIIFSTMQKF-RDENERFELLSQRGDIIVIADEAHRTQYGFSARLRSESL---AYGYAQN 435 Query: 603 YRRILDHFDAVKIALTATPA----LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIIT 658 R L +A I + TP +T +FG+ + Y ++ AV DG + ++ Sbjct: 436 VRDALP--NATYIGFSGTPIEKDNANTRNVFGDYIDIYDFQKAVDDGATLPLFYESRLAK 493 Query: 659 RNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNY 718 + E ++I D+ + + + + ++ + Sbjct: 494 LHLSEEGK--------------KLIESFDTDNTQGSLLKLQDIIGAKERLKNIAKDILEH 539 Query: 719 LDPTG---SQKTLVFCVTNAHADMVVEELRAAFKKKYPQL--EHDAIIKITGDADK---- 769 + K ++ C + A + EL + A + IT A Sbjct: 540 FNARKEKLKGKAMIACSSREIAVDLYNELVELEPSLHSDDYTTGRAKVIITSSASDGAKL 599 Query: 770 -----DARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQM 823 + + + R N ++ D+ TG D P + + + ++ L Q Sbjct: 600 SKFHTSKEEQRHIANRANDINDCLEFIIVCDMWLTGFDAPPLHTLYIDKPMKGHTLM-QA 658 Query: 824 KGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPK--VELQTLVNEITDSETY 881 R R+ +K S I D + I + L+ V+ Q LV + + Sbjct: 659 IARVNRVY--KDKPSGLIVDYIGIMAELQKALQFYTQGKSQNFLVDKQKLVEVVYEKHEV 716 Query: 882 KITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNG 941 G + + KL + + E + + + +L + V N Sbjct: 717 LKQMLHGFEYMGYFQADTRGKLDLLSQITDKILSDEELKKRFLDEVVKLVKAYIMVLPND 776 Query: 942 FASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDY 1001 L + F L I + E K +N + + D+ + + + Sbjct: 777 EIQNLSK-----EIAFFELLKNRIKKSEYSKAQADNALKQSLIKQVIDKELVSEGMIDIL 831 Query: 1002 DTPQDFLEAFDSLVQRSPNAQ-------PALQAVINRPRDLTRKGL-VELQEWFDRQHFE 1053 D Q E L AL+ + D + L EL+ + Sbjct: 832 DKSQIKTENISILSNEFLEGMRHYKYPHIALETLRKLLNDELQARLPKELKSKGLYEKLH 891 Query: 1054 ESSLRKAWKETRNEDIAARLIGHIRRAAVGDA------LKPFEERVDHALTRIKGENDWS 1107 + ++ K + LI + D L +E AL+ K + Sbjct: 892 QILMQYQNKLIDAAKVIEELIELSQELIASDEKKQDSGLSDYEYAFYEALSEFKEVEEIM 951 Query: 1108 --SEQLSWLDRLAQALKEKVVLDD 1129 + + +KE LD Sbjct: 952 GVEKLRELSKAVFFTIKENATLDW 975 >UniRef50_D2MXN8 Type I site-specific deoxyribonuclease chain R n=8 Tax=Campylobacter RepID=D2MXN8_CAMJE Length = 972 Score = 356 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 111/869 (12%), Positives = 257/869 (29%), Gaps = 84/869 (9%) Query: 288 KDETGNQGFADYVLFVGLKPIAVVEAKR--NNIDVPARLNESYRYSKCFDNGFLRETLLE 345 T N+ D V+F+ P+ +E K +V + + + + F + Sbjct: 128 YYSTQNKNSLDMVIFLNGLPLITIELKNHFTGQNVFHAIEQYKKDRNPREPMFSLTIVHF 187 Query: 346 HYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRN 405 D + + +PF N + + +G D T Sbjct: 188 SLDHDLCYMS--------TKLDQDATIFLPFNLGLNNGSGKIGLANGAGNPPSDGIKTAY 239 Query: 406 MSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ- 464 + + + + LL + + Q + + + RY+Q D V + + Sbjct: 240 LWEKI---FKKNTLLNLFFNFVQVVKKKNEEII----IFPRYHQFDVVEKLLAHAKENGT 292 Query: 465 -QEILLAMATGTGKTRTAIAMMFRLIQSQR-----FKRILFLVDRRSLGEQALGAFEDTR 518 Q L+ + G+GK+ + + L+ R F I+ + DR+ L Q + Sbjct: 293 GQRYLIQHSAGSGKSNSIFWLAHNLVSLHRLEKNIFDSIIVVTDRKVLDRQIRENVKSFS 352 Query: 519 INGDT-FNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAH 577 +I E+ KI + T+Q + I++DEAH Sbjct: 353 QKTKNLVEAITHGSKQLKNALEEGKKIIITTIQKFPFILDEIKTLKSKTF--AIIIDEAH 410 Query: 578 RGYILDKEQTEGELQFRSQLDYVSAYRR-ILD-------HFDAVKIALTATPALHTVQIF 629 Q E D IL+ +A A TATP T+++F Sbjct: 411 SSQSGSNAQKMAEAIRDKSSDENQNLDDEILEIIKNKKLQSNASYFAFTATPKPKTLEMF 470 Query: 630 GE-----------PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISP 678 G P + Y+ + A+ +G ++D + + + ++ Sbjct: 471 GMPCDVNGEQMFIPFHLYSMKQAIEEGSILDVLKDYTTYKSYYKIISCTNDNPKYDKKRA 530 Query: 679 QGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTN--YLDPTGSQKTLVFCVTNAH 736 ++ N I ++ +C + G K +V + + Sbjct: 531 NAKLKAYVQ-----------NNIKTIEQKSQIMCEHFFQNSFKKINGKAKAMVVTSSREN 579 Query: 737 ADMVVEELRAAFKKKYPQLEHDAIIK--------ITGDADKDARKVQTMITRFNKERLPN 788 A R +K YP + I ++ + + F K+ Sbjct: 580 AVKYYLVFREYLRKNYPYFKAIVAFSGEVNLEGEIYSESGLNGFSENALKDEFKKDEY-R 638 Query: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIY 848 ++ + TG D + + + + S + Q R R C NK + + D V+ + Sbjct: 639 FLIVAEKYQTGFDEALLHTMYVDKAL-SGVSAVQTLSRLNRTCE--NKENTFVLDFVNTH 695 Query: 849 STLESVD--TMRPVVVRPKVELQTLVNEITDSETYKITEADGR-SFAEHSHEQLVAKLQR 905 + + + + + + Y+I + F + + + Sbjct: 696 EDIAKSFSVFYEQTYLSEATDDNRIFDLKANLNEYEIYTQEQIDDFTDAILRKEKENVIH 755 Query: 906 IIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKL--PG 963 +R ++ D+++ ++ +F + + KL Sbjct: 756 AKLDIMLSRFDQKSDDEKLDFYNKARTYLKEYSFLAQILPYEDIELEKLYILLKKLVCKI 815 Query: 964 FIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTP---QDFLEAFDSLVQRSPN 1020 + + + L I + D + + D+ + P ++ ++ + N Sbjct: 816 ILPKSQDLAKGILDNVDFDSYRLLLDKTQDIILQGNGELKPSFADGSSKSVEAELAELSN 875 Query: 1021 AQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRA 1080 + ++ + +R+ + ++ ++ ++ Sbjct: 876 IIKDFNNKYANIDFNESDKIAKILCDIKDDIVKNERIRETFDKSDMQNSRIEFDTLLK-- 933 Query: 1081 AVGDALKPFEERVDHALTRIKGENDWSSE 1109 D ++ E + ++ + Sbjct: 934 ---DTIQDILELNLELFKQFNQNIEFKDK 959 >UniRef50_A9BH04 Type I site-specific deoxyribonuclease, HsdR family n=6 Tax=cellular organisms RepID=A9BH04_PETMO Length = 981 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 112/897 (12%), Positives = 258/897 (28%), Gaps = 103/897 (11%) Query: 259 QADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNI 318 + + + F + + + E+ AD V + P ++E K + Sbjct: 115 EKRERNVTFLDTYEIDRNIFQVTDEF--TFTNGSETIRADVVFLINGVPFILIETKAPHR 172 Query: 319 D--VPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPF 376 + + RY + + + Sbjct: 173 TDPLNEAYKQVKRYHQEAPELLAILQIFGLIDVIRFYYGAT------------------- 213 Query: 377 CYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFAD 436 N + S ++D D + + + ++++L Q Sbjct: 214 ---WN-------LSGGSLFEWKDELDQGY-ETLIKTFFDRKRVIKILTDFILFTKQDEE- 261 Query: 437 NPGMSELGLRYYQEDAVRAVEKAIVK-GQQEILLAMATGTGKTRTAIAMMFRLIQSQ--R 493 + ++ LR +Q AV + + +Q L+ G+GKT T I ++I+ Sbjct: 262 ---LKKVVLRPHQMKAVDKIIERAKDPSKQRGLIWHTQGSGKTYTMIVTAKKIIEDPFFE 318 Query: 494 FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV 553 ++ LVDR L Q + I + K L D + V+ + Sbjct: 319 NPTVIMLVDRNELESQLFSNLKSVGIE--NVEVVESKKHLRQLLKTDKRGLIVSMIHKF- 375 Query: 554 KRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAV 613 + + + ++VDEAHR +A Sbjct: 376 ---DNIPADLNLRKNIFVLVDEAHRSTGGKLGTFLEGALP-----------------NAT 415 Query: 614 KIALTATP------ALHTVQIFGE------PVYRYTYRTAVIDGFLIDQDPPIQIITRNA 661 I T TP T FG+ + +Y+ ++ DG + Sbjct: 416 YIGFTGTPIDKTNYGKGTFVTFGKDDPPKGYLDKYSISESIKDGTTVPLYYTFAPNKMMI 475 Query: 662 QEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAV----CNELTN 717 ++ V + + +V ++ ++ + L + + Sbjct: 476 EKDVLEKEFLTLAETQGVSDVEELNKVLEKAVKLKNM---LKNNDRVQLISKFVAKHFKE 532 Query: 718 YLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI---TGDADKDARKV 774 +++P G K + V + EEL +Y ++ + + Sbjct: 533 FIEPMG-FKAFLVAVDREACALYKEELDKHLPPEYSKVVYSQSQNDPPQMTKYYLSEMEE 591 Query: 775 QTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC-- 831 + + F K LP I++ + L TG D P + + + +R +L Q R R Sbjct: 592 KKVRENFKKPGELPKILIVTEKLLTGFDAPILYCMYLDKPMRDHVLL-QAIARINRPYKK 650 Query: 832 PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSF 891 E +K + + D V I++ LE + +E L+ E + E Sbjct: 651 EEKDKKNGLVVDFVGIFNNLEKALAFDSEDIEGVIEDIELLKEEFAQQMEIGKEKYLSIV 710 Query: 892 AEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNF-------NGFAS 944 A+ ++ V + + K + L D + + Sbjct: 711 AKKDRDKSVDAILEYFMDEEKRNEFFVYYKKLSGLYEILSPDKFLKKYLQDYDTLSRMYK 770 Query: 945 RLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKS-LYGDYDT 1003 L+ + ++K + + +F+ + + ++ D + Sbjct: 771 ILKNAYEKGVSVDEEFTEKTKKLIQKYTKNSKIKDTLEVFVIDEYTLKRIEESNASDVEK 830 Query: 1004 PQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKE 1063 + ++ + V+ P L + + +L + + + ++ +++ + Sbjct: 831 VFNLYKSIEKTVEEESVEYPILITIGEKAENLLFLYKNRQKSTEETLNGLKNLVQETNDK 890 Query: 1064 TR-NEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDW---SSEQLSWLDR 1116 + ++ + + D E + + K Q + + Sbjct: 891 KKAQKESGKSAAFFTLKELLKDESIDDAEDIAEEFEKKKETYPLWDKDEVQKRKMRQ 947 >UniRef50_Q4HNM6 Type I restriction-modification system, R subunit n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HNM6_CAMUP Length = 813 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 191/903 (21%), Positives = 314/903 (34%), Gaps = 161/903 (17%) Query: 234 IKRTLNLSEEESRF-LIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETG 292 +K NLSEE+++ I+ L K GW +S + + A + ++ + TGK + Sbjct: 1 MKALQNLSEEDTKKRYIEPALSKVGWDFESIKMEYGVKA-KDYEFSEGKIDIKTGKRDKS 59 Query: 293 NQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEV 352 ADYVLF +AV+EAK + + ++ Y+K Sbjct: 60 TIKKADYVLFYNGIALAVLEAKAYKYEDSEGIEQAKNYAKAL------------------ 101 Query: 353 HEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPE 412 K PF +S++G+ + TK D + + L Sbjct: 102 --------------------KAPFAFSSSGKGFVKYTLTK------DFKGVAKENLPLNA 135 Query: 413 WHRPEELLEMLGSEPQKQNQWFADNP-GMSELGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 + P EL E N +S+ RYYQ +A+ A A KGQ ILL + Sbjct: 136 FPSPGELYEAYKKWQNLTNDNLLQTHCDLSQTTPRYYQNNAINAALIATQKGQSRILLVL 195 Query: 472 ATGTGKTRTAIAMMFRLIQS-----QRFKRILFLVDRRSLGE-QALGAFEDTRINGDTFN 525 ATGTGKT A + RL ++ ++IL+L DR L F+ Sbjct: 196 ATGTGKTLIAYQIAHRLFNQTLPNGKKIEKILYLADRNELINTDTTRTFKSF-------- 247 Query: 526 SIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP------MPVARYDCIVVDEAHRG 579 I + ++ + ++ Q + + ++++ + +D I +DE HRG Sbjct: 248 -AKGIYKIENRNFKSGYSLYFGIYQQFISGSEENNDKKEHYKALKPDFFDLIFIDECHRG 306 Query: 580 YILDKEQTEGELQFRSQLDYVSAYRRILDHFD-AVKIALTATP----------------A 622 S +R IL++F+ A++I +TATP Sbjct: 307 SARAD----------------STWREILEYFNSALQIGMTATPKYNKEQRESQEAGELEK 350 Query: 623 LHT--VQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQG 680 + FGEPVY+Y+ + + DG+L P +I + + E +R Sbjct: 351 RDDDNIDYFGEPVYQYSLKQGIDDGYL----APFSVIENLSNIEMQGYTPELGKRDEEGR 406 Query: 681 EVINDTLEDDQDFEVADFNRGLVIPAFNRAVCN---ELTNYLDPTGSQKTLVFCVTNAHA 737 E+ +T F DFNR + + R V + ++ KT++FC HA Sbjct: 407 EIPQET------FNSPDFNRTIYLKPQIRFVAKKVSKFLHHTLKNPYAKTIIFCEDQRHA 460 Query: 738 DMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFN--KERLPNIVVTVDL 795 ++ + L+ K+ + + I +IT D DK + ++ F +R P I T L Sbjct: 461 LLMKDALQDE-NKQEVAKDSNYITRITSDDDKG----KALLDNFKSVSKRYPVIATTSQL 515 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRL---CPEVNKTSFKIFDCVDIYSTL- 851 L+TGVD + IV + VR + L++QM GR TRL KT F + D I Sbjct: 516 LSTGVDTQMVQVIVIDKIVRDKSLFKQMIGRGTRLNEVLESKGKTHFYVLDFKGIAREFL 575 Query: 852 ESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLAT 911 D V E++ E T K + + + + + Sbjct: 576 NDPDFDGEVEFIGTDEVRE--REKKPESTDKENKTESNDLPPDIKDPPIKYTIGGEEIQV 633 Query: 912 FNRDRSETIDKQVRRL-------DELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGF 964 + + +S I + V + E N F S L+ A Sbjct: 634 YTQSKSVAILRNVNGVLTPITQSLESFSGEKLKNTKAFESYLKTLRIGDKA----TREEL 689 Query: 965 IARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD--------YDTPQDFLEAFD---- 1012 + +LE+ I L F + D+ + + G FLE+ Sbjct: 690 LNKLEEKGIFIQELGQMDKFKNCDEFDILLSLAKGSPALSRTQRAKKANKFLESLQPKAR 749 Query: 1013 --------SLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKET 1064 Q N N P + E L+ Sbjct: 750 ELLELLLEKYAQGGINEL-DSSVFKNEPFKSKYTNRSTIVEILKEYGGVNVVLQNLKNAL 808 Query: 1065 RNE 1067 E Sbjct: 809 YEE 811 >UniRef50_A9DFK8 Type I restriction-modification system, R subunit n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DFK8_9RHIZ Length = 1004 Score = 355 bits (910), Expect = 7e-96, Method: Composition-based stats. Identities = 149/977 (15%), Positives = 274/977 (28%), Gaps = 182/977 (18%) Query: 225 YHKEITDQAIKRTLNLSEEESRFLI---DAQLRKAGWQADSKTLRFSKGARPEPGVNKAI 281 ++ + A +SE E+ + D + G + +TLR P Sbjct: 57 INRPSAEAAYGELAAISENETWLKVLRGDYARKVTGQETW-QTLRVIDFLEPGNNRFVVT 115 Query: 282 AEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN---NIDVPARLNESYRYSKCFDNGF 338 + + N D V++V P+ V+EAK + +Y + F Sbjct: 116 HQLRV---KAENTRRPDLVVYVNGIPLVVIEAKSPLNIKDKTGEAFEQIRQYERDIPRLF 172 Query: 339 LRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYR 398 V Y G + + + Sbjct: 173 FSNVFNIVTDGALVL------------------------YGATGASSKYFGEWRDPWPKS 208 Query: 399 DVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEK 458 D +++K L P LL+++ + G + RY Q AV + + Sbjct: 209 DADFPDSLAKGLWCLLEPGRLLDLIAHYVVFE----KTEDGTVKKICRYQQFRAVNRIVE 264 Query: 459 AIVKGQQE-ILLAMATGTGKTRTAIAMMFRL-------IQSQRFKRILFLVDRRSLGEQA 510 +++G+ L+ G+GK+ T + +L ++ IL L DR L Q Sbjct: 265 RVLEGKHRQGLIWHTQGSGKSLTMVFAALKLKTHRTIVSEALTNPNILVLTDRVDLHTQI 324 Query: 511 LGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIH-VATVQSLVKRTLQSDEPMPVARYD 569 G F + T I IK L ++T+ S EP+ + Sbjct: 325 SGTFVACGLPNPTP--IDSIKDLHALIRSGKDGHTALSTIFKFQ----GSKEPVENSENW 378 Query: 570 CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHT 625 ++VDEAHR D A T TP +T Sbjct: 379 IVMVDEAHRTQEKDLGAYLRATLP-----------------KARFFGFTGTPVKKDDKNT 421 Query: 626 VQIFG----EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGE 681 FG + +Y AV DG + PI R + +K + + Sbjct: 422 YANFGVVGESYLDKYGIDDAVADGATV----PIYYTGRKTDWHIDEAKIDIL--FDTWFA 475 Query: 682 VINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD---PTGSQKTLVFCVTNAHAD 738 +D ++ + P + ++ + K + + Sbjct: 476 EFDDDKLNEIKKRGVRIEDLVRHPRRIELIAYDIWTHFKAYAQPDGFKAQIVAIDREAVI 535 Query: 739 MVVEELRAAFKKKYPQLEHDAIIKITGDA------------------------------- 767 + + L + D + Sbjct: 536 LYRQALTRVIAEDLQAGGLDVATALARADAMSACVYSINQEDGKPSEDAHRQAIRDGLKA 595 Query: 768 -DKDARKVQTMITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 DA + + F K P ++ D L TG D P + + ++ L Q Sbjct: 596 HHVDAEAEKQVKQAFGRKGEDPQFLIVCDKLLTGFDCPIESVMYLDKPLKEHGLL-QAIA 654 Query: 826 RATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITE 885 R R+ K + I D + + + LE L + D + + Sbjct: 655 RTNRVSDRK-KRNGLIVDYIGVSANLEEA----------------LASYRADDVKNAMRD 697 Query: 886 ADGRSFAEHSHEQLVAKLQRIIGLATFNRD-RSETIDKQVRRL-DELCQDAAGVNFNGFA 943 D + +VA + + + F++D D ++ L E F Sbjct: 698 LDDLRNQLRTAHAVVAVMLKPVKRKAFDKDGLKAEFDAFIKALGSEDKWFEFKARARSFI 757 Query: 944 SRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDT 1003 + P S F ++A L + F + Sbjct: 758 ALYETLSPDPSVLEFTADLKWVATF--LLYGTQHFEKRQAFDQM---------------- 799 Query: 1004 PQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKE 1063 ++ E ++ + A V + R +T E F+ + L A Sbjct: 800 --NYSEKIREMLNQHLEATGLSVTV--KLRHITDPDFWE---DFETDGKTDEDLMTAAIR 852 Query: 1064 TRNED---IAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLA-- 1118 E ++ R+ + F ER+ L +++ QLSW D+L Sbjct: 853 KTTELRKTVSERIDASPHQYGK------FSERLRQLLEKLESA------QLSWSDKLKAA 900 Query: 1119 QALKEKVVLDDDVFKTG 1135 + L + +D+ + Sbjct: 901 EELARDLAAEDEAYVDA 917 >UniRef50_C5BX90 Type I site-specific deoxyribonuclease, HsdR family n=7 Tax=Bacteria RepID=C5BX90_BEUC1 Length = 1015 Score = 355 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 147/1033 (14%), Positives = 271/1033 (26%), Gaps = 185/1033 (17%) Query: 140 ENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQAR 199 E + T+ + E + Q+E E + + + L E+ Sbjct: 9 EPIAMSSDSTVVAEFTADPAEATRYQSEAELEAELVRLLREQAYEYLPITSES-----DL 63 Query: 200 LAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLID--AQLRKAG 257 +A L QL N E +R ++ + E+ R D L++ Sbjct: 64 VANLRRQLEALNHITFTDAEWKR-----FFAERIAGERDGIVEKTVRIQEDHVQLLKRD- 117 Query: 258 WQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ-------GFADYVLFVGLKPIAV 310 SK + + I ++ + + D + V P+ Sbjct: 118 -DGTSKNITLLDKTHIHNNRLQMINQYEVPGAPSSDGAGRPRRANRYDVTILVNGLPLVH 176 Query: 311 VEAKRNNIDVPARLNESYRYSKCFD----NGFLRETLLEHYSPDEVHEAVPEYETSWQDT 366 VE KR +D+ N+ RY + F L + + Sbjct: 177 VELKRRGVDLREAFNQINRYQRDSFWSGSGLFEYVQLFVISNGTLTKYYSNTTRSQHLSE 236 Query: 367 SGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSE 426 GK + ++N E+ + + D+ + LL +L Sbjct: 237 QGKAKRGR---KTSNSFEFTSWWADATNRPIMDLVGFT------RTFFAKHSLLNVLTKY 287 Query: 427 PQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIV--KGQQE-------ILLAMATGTGK 477 + L +R YQ A + I Q+ + TG+GK Sbjct: 288 CVQTADRM-------LLVMRPYQIAATEQILTRIETSSNQKRFGTLSAGGYVWHTTGSGK 340 Query: 478 TRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKF 537 T T+ + ++LF+VDR+ L Q + ++ NS L + Sbjct: 341 TLTSFKTAQLASKLGGVDKVLFVVDRKDLDYQTMREYDRF--EKGAANSNTSTAVLKRQL 398 Query: 538 PEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQL 597 + S +I + T+Q L ++ + + DE HR D + R Sbjct: 399 EDPSKRIIITTIQKLSTFIAKNAGHAIYGGHVVTIFDECHRSQFGDMHTAITKAFKRYH- 457 Query: 598 DYVSAYRRILDHFDAVKIALTATPA-------------LHTVQIFGEPVYRYTYRTAVID 644 T TP T Q FG+ ++ YT A+ D Sbjct: 458 ----------------LFGFTGTPIFAVNAGTGGNPTLRTTAQAFGDKLHTYTIVDAITD 501 Query: 645 GFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVI 704 ++ + D+ D R L+ Sbjct: 502 RNVLPFRIDY-------------------------VNTVKVGAVIDKQVSAIDTERALLD 536 Query: 705 PAFNRAVCNELTNYLDPTGSQK--------------TLVFCVTNAHADMVVEEL------ 744 PA R V + ++ D + L + A + Sbjct: 537 PARVRQVTQYVLDHFDQKTKRNQTYALKDRRVVGFNALFATASIDAAKVYYNMFSLLQED 596 Query: 745 -------------------------------------------RAAFKKKYPQLEHDAII 761 R + Sbjct: 597 LPDAKKLKVGLIYSYAANEAEDETAAGLLGEEEFETHDLDASSRDFLEDAIQDYNDMFGT 656 Query: 762 KITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 ADK + + R R ++V+ V++ TG D ++ + + +R+ L Sbjct: 657 SFDTSADKFQNYYKDLSLRLKD-REIDLVIVVNMFLTGFDATTMNTLWVDKDLRAHGL-V 714 Query: 822 QMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETY 881 Q R R+ V KT I D+ + + L E D Sbjct: 715 QAYSRTNRILNSV-KTYGNIVSFRDLEQETNDAIALFGNKDAAGIVLLKPYGEYFDEYAD 773 Query: 882 KITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNG 941 K+TE R A+ I R R+ + +++ D ++ Sbjct: 774 KVTELRERFPLGTPIVGEQAQKDFIAVFGALLRLRNILLSFDNFAGNQILSDRDLQDYQS 833 Query: 942 FASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFL---------DIDDEVV 992 L + + + +L + D + L D DD + Sbjct: 834 IYLDLYQSFRRADTAERETINDDVVFEIELIKQVEINVDYILMLVEKYRAAKGDGDDREI 893 Query: 993 SVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLV-ELQEWFDRQH 1051 +P L L++ + + V R EL++ ++ Sbjct: 894 RATIDRAIDSSPS--LRNKKDLIEEFVDRLSVDEDVAAEWRAYVATKRDAELEQIIADEN 951 Query: 1052 FEESSLRKAWKET 1064 + R Sbjct: 952 LKPDQTRAFIDTA 964 >UniRef50_B5H9V0 Type III restriction enzyme n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H9V0_STRPR Length = 790 Score = 354 bits (909), Expect = 8e-96, Method: Composition-based stats. Identities = 175/819 (21%), Positives = 300/819 (36%), Gaps = 132/819 (16%) Query: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 LR Q +++A+EK++ G Q L+ MATG GKT T + +RL++ +R+LFLVD Sbjct: 6 KRLRSAQYKSIKALEKSLAGGNQRALIQMATGAGKTYTVVQSSYRLLRHAGARRVLFLVD 65 Query: 503 RRSLGEQALGAFEDTRINGD--TFNSIFDIKGLTDKFPEDSTKIHVATVQ----SLVKRT 556 R +LG+QA + D G + ++ + DS KI ++T+Q L Sbjct: 66 RNNLGKQAYNEYRDFVPLGARTPLHEQMPLRLFSKGAVADSDKIVISTIQRLWCKLSGIP 125 Query: 557 LQSDE-----------------------PMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 + +D+ +P +D IVVDE HR Sbjct: 126 VPADDDESFETERADRLAGSVASVGYCPDLPPDFFDVIVVDECHRSIYGR---------- 175 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFG-EPVYRYTYRTAVIDGFLIDQDP 652 +R +L++FDA I LTATP T F V +YTY AV D +D D Sbjct: 176 ---------WRPVLEYFDAHVIGLTATPIHQTFAFFDNNLVSQYTYEQAVADSVNVDYDI 226 Query: 653 PIQIITRNAQEGVYLSKGEQVERISPQGEVI---------------NDTLEDDQDFEVAD 697 +I TR ++G + + + ++E D + + Sbjct: 227 -YKIGTRITEQGSVIPALSTEVLPDGTVQQVNSVIAKVHKLTRAEHWQSVEADDPYARTE 285 Query: 698 FNRGLVIPAFNRAVCNELTNYL----------DPTGS-------QKTLVFCVTNAHADMV 740 N+ + R + + L TG KTL F + HAD + Sbjct: 286 VNQRVRSTDQIRLIVETFRDNLFTEIFPPTVDQETGEVQSREIVPKTLFFAQNDLHADAI 345 Query: 741 VEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGV 800 VE +R AF KIT A + ++ F +R I VTVD++ TG Sbjct: 346 VEAVRTAF----GGAGDGFCRKITSQASRP----DKALSDFRNKRDLRIAVTVDMIATGT 397 Query: 801 DIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN----------KTSFKIFDCVDIYST 850 DIP++ +VF+R +++ +EQMKGR R +++ K F I D V + Sbjct: 398 DIPALECLVFMRDIQTWSYFEQMKGRGARTVKDLDLVKVTADAVHKDRFVIVDAVGVTEH 457 Query: 851 LESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLA 910 RP+V + +L + E ++ D + +L +L A Sbjct: 458 --PKTDARPLVRDDAKPVPSLERLLRACERGELLHPDDIATLAGRLSRLGRRLDERGRAA 515 Query: 911 TFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEK 970 + + + R DA R P E+ + + +A E Sbjct: 516 IEEYLGVDQTYEGMVRSLVRAADAERPA----LVRAESSAPEEDGEIADAVGLLVASEEL 571 Query: 971 LKTDINNLNDAPIFLDI--DDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAV 1028 + D+ + +D D+++ + + + ++ + + + + AL+ Sbjct: 572 RAALLRAARDSWLLVDHLSQDQLLEA-RGLRNEEEARRVVDDWRAYMAEHEDDMLALRIA 630 Query: 1029 INRPRDLTRKGLVELQEWF-----DRQHFEESSLRKAWKETRNEDIAA-------RLIGH 1076 R R+ L EL+ R+ + E+ L KA+ + + AA + Sbjct: 631 FQE-RRPPREVLRELKALIGKVRATRREWTEARLWKAYVDLKIARGAARRNAGLVEFLSV 689 Query: 1077 IRRAAV--GDALKPFEERVDHALTRIKGEND-----WSSEQLSWLDRLAQALKEKVVLDD 1129 IR G+ +P+ V+ L + + + Q +WL ++ + L Sbjct: 690 IRYELGLDGNEFRPYRSTVEGRLEEWLARQETAGVAFDNRQRAWLRQVVNVVAANATLTV 749 Query: 1130 DVFKTGNFHRRGGKAMLQRTFDD---NLDTLLGKFSDYI 1165 G GG F D L+ + + Sbjct: 750 ASLDEGRRAAAGGYGDFVDAFKDGRWKPGELVIELDREL 788 >UniRef50_A4CI89 HsdR n=2 Tax=Flavobacteriaceae RepID=A4CI89_9FLAO Length = 1000 Score = 354 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 121/865 (13%), Positives = 259/865 (29%), Gaps = 109/865 (12%) Query: 259 QADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR--- 315 + + + P+ + + ++ N D ++F+ P+ + E K Sbjct: 97 EEKAIHMYPLDYENPDNNTYRVVNQFSVT---GKNVRRPDVIVFINGLPLVLFELKNWYD 153 Query: 316 NNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIP 375 + N+ Y K F L +E + W Sbjct: 154 EKTSIKEAFNQIGHYKKDIPELFEYNALTVISDGNEAQHGMFSSSLEWFAP--------- 204 Query: 376 FCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFA 435 + R T+ M L E LL + + ++ Sbjct: 205 ----WKSIDGRTTVADGDF----------QMHTLLFGLFPKERLLNYIKNFIFHED---- 246 Query: 436 DNPGMSELGLRYYQE----DAVRAVEKAIVK--GQQEILLAMATGTGKTRTAIAMMFRLI 489 N + + G +Y+Q AV A ++A+ + ++ G+GK+ + L Sbjct: 247 HNGTLIKKGAKYHQFFGVNFAVDAAKRAVRPYGDGRIGVIWHTQGSGKSISMAMYTGILR 306 Query: 490 QSQ--RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVA 547 + I+ VDR L Q F + + L + + Sbjct: 307 SLPELKNPTIVVQVDRSDLDFQLYENFVLAKDLVGEVSHAESTDELRSLLSAGAGGVIFT 366 Query: 548 TVQSLVKRTLQSDEP-------MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV 600 T++ + D + ++ DEAHR + Sbjct: 367 TIEKFRLKLGYEDTEGEEEHPVLSERENVIVMADEAHRTQYGLL------------DGFA 414 Query: 601 SAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQI 656 S R+ L +A I T TP T +FG ++ Y + AV D ++ ++ Sbjct: 415 SNLRKALP--NASFIGFTGTPIDKKDADTEAVFGSVIHTYDIQQAVADKATVNIYYEPRL 472 Query: 657 ITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELT 716 + E I + I +T E+D + A + + +++ Sbjct: 473 AKLHL----------WNEDIDEEVAAITETDEEDGNMNWAAIEDAAGAADRVKELASDIL 522 Query: 717 NYL---DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARK 773 + T K ++ C++ + + + L A + + + +TG+ KD ++ Sbjct: 523 RHFTLRTETLEGKAMIVCMSRRNCVKMYDALTAL------EGCPEIAVVMTGNISKDPKE 576 Query: 774 ----------VQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQ 822 + + RF + P +V+ D+ TG D P + + + +R L Q Sbjct: 577 WNPHIRTKEAKEALKKRFRDPKDPLKMVIVRDMWLTGFDAPCVHTMYVDKIMRGHNLM-Q 635 Query: 823 MKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPV---VVRPKVELQTLVNEITDSE 879 R R+ +K + I D + I L + +P ++++ + D Sbjct: 636 AITRTNRVFR--DKDNGVIVDYIGIGDNLRNAARKYTQGGGKGKPTIDMKQALELFNDQI 693 Query: 880 TYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNF 939 + G ++L + ++ N D Q L E Sbjct: 694 EACLQYIPG-DIDYSPWKRLREGDKLLLVKTAVNAIVPSDEDSQNFMLGEKKLSGLLSIV 752 Query: 940 NGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYG 999 + + K + + + I ID E V Sbjct: 753 KNQPVIQDKAVDVLFIQHVAKAVRNAKSVRIQRENHRERVKELISQSIDSEAVVDVFAMA 812 Query: 1000 DYDTPQ-DFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLV-ELQEWFDRQHFEESSL 1057 + P L+ ++ + + + I +++ + + L + + + L Sbjct: 813 GIEKPDISILD--ETFLLGAKEEKDGHALKIELIKNILKDEIKLRLPKNIKKYTSLKEEL 870 Query: 1058 RKAWKETRNEDIA--ARLIGHIRRA 1080 + + + A ++ ++RA Sbjct: 871 ERILERYHTNALDSYATILELVKRA 895 >UniRef50_A8ZY57 Type III restriction protein res subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZY57_DESOH Length = 787 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 181/784 (23%), Positives = 285/784 (36%), Gaps = 149/784 (19%) Query: 238 LNLSEEES-RFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGF 296 ++ +E+++ LI+ L KAGWQ DS+ G+ + T DET Sbjct: 1 MSRNEKQTCTDLIEPALTKAGWQWDSQV---------TIGLGRVNITGDTMYDET-QTII 50 Query: 297 ADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAV 356 ADYVL P+ V+EAK +I + + RY+ Sbjct: 51 ADYVLRYYGAPLVVLEAKAESISAADGMQQGSRYA------------------------- 85 Query: 357 PEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRP 416 R I F +TNG ++ T + L P Sbjct: 86 -------------GRLDIRFSIATNGTDWVLTDND------------SGKYETLSAPPSP 120 Query: 417 EELLEMLGSEPQKQN-----QWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAM 471 E +L G +S +R YQ+ A+ G LL M Sbjct: 121 EAILTHHGISIDWDQWGEVFSAGYHIDQVSRKVVRPYQDVAIHKTLWHFAGGNNRALLLM 180 Query: 472 ATGTGKTRTAIAMMFRLIQSQRFKR--ILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 ATGTGKT ++++L+ + KR ILFL DR SL +QA AF + + Sbjct: 181 ATGTGKTFVVFQLVWKLLNTSILKRQHILFLTDRNSLKDQAYRAFAAFSTDERVTINKDT 240 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSD--EPMPVARYDCIVVDEAHRGYILDKEQT 587 + + K+ A Q+L + E +D +++DE HR D Sbjct: 241 VANGQHQV----GKVFFANYQNLDEELDGKKIFEHYDQDFFDLVIIDECHRSGFGD---- 292 Query: 588 EGELQFRSQLDYVSAYRRILDHFD-AVKIALTATPA---------------LHTVQIFGE 631 + +L+HF+ A+++ LTATP T + FG Sbjct: 293 ---------------WFGVLEHFNSALQMGLTATPRELEEGRRVLTEEEKRRDTYEYFGA 337 Query: 632 PVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ 691 P+Y Y+ + A+ DG+L+ +I + T D + Sbjct: 338 PIYTYSLKQAIEDGYLVPYLLEERITNV---------------------DEEGYTGLDGK 376 Query: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDPTG--SQKTLVFCVTNAHADMVVEELRAAFK 749 + A+F R + +P A+ +L L +K++VFCV + HA + ELR Sbjct: 377 HYTTANFERDIRMPDRTTAIAEDLWEILGQYDLRDEKSIVFCVDDTHAAFMAAELRRLSG 436 Query: 750 KKYPQLEHDAIIKITGDADKDARKVQTMITRFNK--ERLPNIVVTVDLLTTGVDIPSICN 807 G + R + F P + VTVDLLTTG D P + N Sbjct: 437 DDDY----------AGRIVRSERNSHQLERNFATVGSTKPRVAVTVDLLTTGFDAPDVKN 486 Query: 808 IVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVE 867 IVF+R +RS ILY+QMKGR TRLC ++NK F IFD ++ P + + Sbjct: 487 IVFVRPLRSAILYKQMKGRGTRLCEDINKRYFTIFDYSGASQLEDAEFDGHPANRQKGAQ 546 Query: 868 LQTLVNEITDSETYKITEADGRSFAEHSHEQL-VAKLQRIIGLATFNRDRSETIDKQVRR 926 +T + TD K ++ + +A ++I + R+ +D + Sbjct: 547 PKTKPRKKTDEPAAKPAGEGISVVISDTNRYVCLADGRKIPFEEYTEQSRNFILDVSAKS 606 Query: 927 LDELCQDAAGVNFNGFAS---RLREKGPHWSAEVFNKLP-GFIARLEKLKTDINNLNDAP 982 LDEL N R + P + L K+ ++ + P Sbjct: 607 LDELLTIWIDKNSRKELREELRDHDIYPSAFRHYLELPKTDDVDILAKIGFNLVRVPTRP 666 Query: 983 IFLD 986 ++ Sbjct: 667 QRVE 670 >UniRef50_C3JM62 Dead/deah box helicase n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JM62_RHOER Length = 1046 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 142/1020 (13%), Positives = 286/1020 (28%), Gaps = 96/1020 (9%) Query: 163 QTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQER 222 AE + + L G + E + + + + Sbjct: 4 NAYAEFAFESRVEAELVGRGWVHAQGTFNVELGLD--TGEMYRFIGATQVKRWNKLIDLY 61 Query: 223 KAYHKEITDQAIKRTLNLSEEESRFLIDAQL---RKAGWQADSKTLR----FSKGARPEP 275 Q +R SE ++R ++D R G D R + A E Sbjct: 62 GGDQSTAQRQFAQRVA--SEVDARGVLDVLRQGVRDRGVLIDLAYFRPGHTLAADALAEY 119 Query: 276 GVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN--NIDVPARLNESYRYSKC 333 N D LFV P+A VE K + + + R Sbjct: 120 SANILTVARQLHYSVRHPNRSLDMALFVNGIPVATVELKNPNTGQNADHAIAQYRRDRDP 179 Query: 334 FDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKS 393 D + P+ +G +PF ++G + Sbjct: 180 ND-------VFLAKRAIVHFAVDPDRAFITTRLNGADTQFLPFNLGSSGAGFSGEAGNPD 232 Query: 394 GIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSE-LGLRYYQEDA 452 + + + + E+L + + NP S + RY+Q DA Sbjct: 233 AAPGS--YSVAYLWEQIWQRDNWLEILHRFVHIEAPEKKGATANPHTSPRIFPRYHQWDA 290 Query: 453 VRAVEKAIVKG--QQEILLAMATGTGKTRTAIAMMFRLI------QSQRFKRILFLVDRR 504 V+ + L+ + G+GK+ T + RL F + + + DR Sbjct: 291 VQKMIGHARTNGAGHNYLIQHSAGSGKSNTIAWLAHRLSNLFDADNQPVFHKAIVITDRV 350 Query: 505 SLGEQALGAFEDTRINGDTFNSIF-DIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPM 563 L Q I + L ++KI V+T+Q + + Sbjct: 351 VLDRQLQKTIFQFDHTPGVVKKIDENSTQLAAALDNTTSKIIVSTLQMYPYMLDKIADMG 410 Query: 564 PVARYDCIVVDEAHRGYILDKEQTEGELQFRS-----QLDYVSAYRRIL-DHFDAVKIAL 617 + +++DEAH + + + D R+ + A Sbjct: 411 LAGKRYAVIIDEAHSSQGGESAIKIKKALGANAIRQEDEDDAEYMTRVRGKQPNLSYFAF 470 Query: 618 TATPALHTVQIFGE-----------------PVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 TATP T+++FG P + Y+ R A+ +G+++D + Sbjct: 471 TATPKSPTLKLFGTFEPNRRNPHTDEMGMYVPFHVYSMRQAIDEGYILDVLANYITY--D 528 Query: 661 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL- 719 + + S +Q E EV + + + L + + ++ + Sbjct: 529 TKWRLRNSAVDQAESAIANPEVDSAKAKAKLVRYAEQHPKSL--EQKAKLIVDDFRENIS 586 Query: 720 -DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMI 778 G K +V HA + + +RA + + D + + Sbjct: 587 ARLGGRAKAMVVTDGREHALDLYQAIRAYVALCRFADCNALVAFSGQLKVDDLEYTEAQL 646 Query: 779 TRFN---------------------KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 F+ + ++V + TG D P +C + + + Sbjct: 647 NGFSEAQLPEKFAYTKADDPHSAAIDKDEYRLLVVAEKYQTGFDQPLLCAMYVDKTLTG- 705 Query: 818 ILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVELQTLVNEI 875 + Q R R+ P ++ + D V+ + ++ D + P + L + Sbjct: 706 VATVQTLSRLNRIHPLKSQDDVHVLDFVNDAADIQRSFEDWFETTITEPS-DPNLLYTKQ 764 Query: 876 TDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAA 935 + Y++ A + + + E + + R + L D Sbjct: 765 REVMDYELLVASEMEAFIRVLAAAGPDRKTDAAERKLHAELHEYLKPALDRFEALDSDDE 824 Query: 936 GVNFNGFAS-RLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSV 994 NF +R + + +DI D +S Sbjct: 825 RENFRSALQGYVRAYSLIAQIVDWGDRDLERLYQYGRILLLRLPGRPATSVDIGDADLSH 884 Query: 995 KSLYGDYDTPQDFLEAFDSLVQRSPNA-----QPALQAVINRPRDLTRKGLVEL---QEW 1046 L E D V+ +P +Q + +L + ++L + Sbjct: 885 FRLELTGRHNVSLSEVGDRDVRGHAADGASYREPDIQPLSEIIEELNGRFGLDLGTSDQI 944 Query: 1047 FDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDW 1106 Q + ++ + AR G + + + + ER + N++ Sbjct: 945 LVYQQVLGLVEDTSMQQIALMNDEARF-GQVADDRLDNIVAENAERNADFMKLYFDNNEF 1003 >UniRef50_A5GB17 Type III restriction enzyme, res subunit n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GB17_GEOUR Length = 753 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 167/825 (20%), Positives = 291/825 (35%), Gaps = 135/825 (16%) Query: 240 LSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT----GKDETGNQG 295 ++E +R LID LR+ GW K+ ++ + ++ G+ G Sbjct: 1 MNETYARILIDDMLRQVGWDPRDKSEVGTEVPVYLSAGHDPAPDYAGRDSFGEPSYHVAG 60 Query: 296 FADYVLFV-GLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHE 354 ADYVL+ +P+AVVEAK+N I+ ++ Y++ D Sbjct: 61 RADYVLYGQNGRPLAVVEAKKNAINPYVAKQQALPYAQRID------------------- 101 Query: 355 AVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWH 414 PF + TNG I++ D + ++ + ++ Sbjct: 102 -------------------APFIFLTNG----------ELIYFWDYLNDD--ARIVDSFY 130 Query: 415 RPEELLEMLGSEPQKQNQWFADNPGM-----SELGLRYYQEDAVRAVEKAIVKGQQEILL 469 ++ ++ ++ + +R YQ++A+RA++ A+ G++ L+ Sbjct: 131 SRRDMERLVEMRQSRKTLATIELQDYYVRQGETRQVRDYQQEAMRALDHAVELGKKRFLI 190 Query: 470 AMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFD 529 + TGTGKT + RL+++ +R+LFLVDR L +QAL +D + Sbjct: 191 ELPTGTGKTDLIGLYLKRLMKAGWAERVLFLVDREQLAKQALETIQDILGE-------YS 243 Query: 530 IKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEG 589 L +I VA +Q+++ E +D +V DE+HR Sbjct: 244 SYWLKPGTVRQEKQITVALLQTMI----GCHEDYSSGYFDVVVTDESHRSIYG------- 292 Query: 590 ELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIF----GEPVYRYTYRTA 641 A++ L FDA+ I LTATP +T + +P + Y + A Sbjct: 293 ------------AWQTALTRFDALHIGLTATPANYIERNTFDFYQCKDNQPDFSYRIQDA 340 Query: 642 VIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRG 701 G+L I T EG L+ D + ++ + N+ Sbjct: 341 FAGGYLAPYRFATGI-TEIIAEGADLNDEHY------------DPSQFERTWTNEKTNKL 387 Query: 702 LVIPAFNRAVCNELTNY--LDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDA 759 ++ F+R + G K++VF ++ HA + L +P+ + Sbjct: 388 MM-EEFDRLAWENYKDLAPGQKDGPGKSVVFAISKHHAARLTHYLNQL----HPEHKGRY 442 Query: 760 IIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRIL 819 IT D +I RF KE P + V+V +L TG D + ++V R+VRS IL Sbjct: 443 AEVITSD----VADADALIRRFKKEIYPMVAVSVGMLDTGFDCRELLHVVMCRRVRSPIL 498 Query: 820 YEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTM-RPVVVRPKVELQTLVNEITDS 878 Y+QM+GR TR P + K F I+D + DT S Sbjct: 499 YQQMRGRGTRTAPHIQKKKFVIYDFFKNHEYFNDSDTDVFSGAGSGGHAPGGTTTGPRPS 558 Query: 879 ETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVN 938 + + E L A +G D+ E + + + D Sbjct: 559 DNLIELGLED--------EWLYAVKYVEVGPNGERIDKKEYVTNWEQTIKGQTDDPILQK 610 Query: 939 FNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLY 998 L + A+ N F + N +D + + L Sbjct: 611 VRED-EHLTNEEEELLAKRLNTPKHFF---NEENLRRAYRNPGGTLIDFIRAALGLLKLK 666 Query: 999 GDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVEL 1043 + + A+ + L + NR + L +L Sbjct: 667 STDERLDENFRAWLVARSLTSEQAEYLSLLKNRGIATGKLQLEDL 711 Score = 91.0 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 68/198 (34%), Gaps = 11/198 (5%) Query: 976 NNLNDAPIFLDIDDEVVSVKSLY-----GDYDTPQDFLEAFDSLVQRSPNAQPALQAVIN 1030 +D I L ++DE + G+ ++++ ++ ++ + + + Sbjct: 555 PRPSDNLIELGLEDEWLYAVKYVEVGPNGERIDKKEYVTNWEQTIKGQTDDPILQKVRED 614 Query: 1031 RPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFE 1090 + L+ + + F E +LR+A++ LI IR A LK + Sbjct: 615 EHLTNEEEELLAKRLNTPKHFFNEENLRRAYRNPG-----GTLIDFIRAALGLLKLKSTD 669 Query: 1091 ERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTF 1150 ER+D +SEQ +L L L + + + F Sbjct: 670 ERLDENFRAWLVARSLTSEQAEYLSLLKNRGIATGKLQLEDLFSPPLSILNAAGIGVELF 729 Query: 1151 DDN-LDTLLGKFSDYIWD 1167 + L ++ ++ ++ Sbjct: 730 GEKGLKEVVDDMNETVFK 747 >UniRef50_Q879X0 Type I restriction-modification system endonuclease n=31 Tax=cellular organisms RepID=Q879X0_XYLFT Length = 1031 Score = 351 bits (901), Expect = 8e-95, Method: Composition-based stats. Identities = 135/1030 (13%), Positives = 282/1030 (27%), Gaps = 133/1030 (12%) Query: 169 EAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKE 228 +L + Q + + + LA A K E A Sbjct: 25 PEYSHELAPTDFAATHNGYVQGKPTDYNRDVALDVVQLLAFLQATQPKVVETLELAADGI 84 Query: 229 ITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPE------PGVNKAIA 282 Q + R E R ++D + L G N Sbjct: 85 KRTQFLHRLQG--EITKRGVVDVLRKGVSHGPVHVDLYKLLPTPGNAAAADAFGKNMFSV 142 Query: 283 EWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR--NNIDVPARLNESYRYSKCFDNGFLR 340 D V+F+ P+ E K + + + + Sbjct: 143 TRQVRYSNDSGNE-LDLVIFINGLPVLTFELKNSLTKQTLADAIVQYQT------TRSPK 195 Query: 341 ETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDV 400 E L + + GK + +PF N RD Sbjct: 196 ELLFQLGRCVAHVAVDDAGVAFCTELKGKASWFLPFNQGWNSGAGNPP--------NRDG 247 Query: 401 RDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMS-----ELGLRYYQEDAVRA 455 T + K + E L ++ S Q AD G ++ R++Q VRA Sbjct: 248 LKTDYLWKQI---LTRESLANIIESYAQVVVVEEADASGKKRKTRKQIFPRFHQLCTVRA 304 Query: 456 VEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLIQSQR--------FKRILFLVDRRS 505 + L+ + G+GK+ T + +L++ +R F I+ + DRR+ Sbjct: 305 LLGRAHSDGVGGRYLIQHSAGSGKSNTIAWLAHQLVELRRKDDPMTPQFDSIIVITDRRA 364 Query: 506 LGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPV 565 L Q + F + + L + KI V TVQ Q + Sbjct: 365 LDTQIADTIKGYDHVAAIFGHSDNAQELCEYLR-GGKKIIVTTVQKFPFILDQLGD--LS 421 Query: 566 ARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDY--------------------VSAYRR 605 + +++DEAH E + RR Sbjct: 422 GKRFALLIDEAHSSQGGKITARMHETLGGKVAEEEFEEEFEEEFEEDRTQDAVNAEIERR 481 Query: 606 ILDH---FDAVKIALTATPALHTVQIFGEPVY-------------RYTYRTAVIDGFLID 649 I +A A TATP T+++FGE YT + A+ + F++D Sbjct: 482 IASRKLLANASYFAFTATPKNKTLELFGEKTLVGDKVQFRSPEELTYTTKQAIQEKFILD 541 Query: 650 QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNR 709 Q ++ + +++ ++ D+ Sbjct: 542 VVEKYTPYDSFYQVAKTVADDPEFDKVKALKKIRLYVESHDKAIRRK-------AEIMVD 594 Query: 710 AVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADK 769 E+ G + ++ C A A E+ + + + Sbjct: 595 HFIAEVVGKQKIGGQARAMIVCNGIARAIDYWREVSDYLTQIKSPYRAIVAYSGSFEIGG 654 Query: 770 DARKVQTMITRFNKERLPN--------IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYE 821 +K + + F + +P+ ++ + TG D P + + + + +L Sbjct: 655 -QKKTEADLNGFPSKDIPDTLKKDPYRFLIVANKFVTGFDEPLLHTMYVDKPLAG-VLAV 712 Query: 822 QMKGRATRLCPEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVELQTLVNEITDSE 879 Q R R P+ K + D D +++ D R + + + L + + + Sbjct: 713 QTLSRLNRAHPQ--KRDTFVLDFADNAEAVKAAFQDYYRATIQMGETDPNKLHDLKAELD 770 Query: 880 TYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNF 939 ++ + + + L + ++ + + + + A ++ Sbjct: 771 GQQVYSWSQVEEVVGLYVSGADRDKLDPILDACVAEYTDKLGEDDQVKFKGKAKAFVRSY 830 Query: 940 NGFASRLREKGPHWSA---------------EVFNKLPGFIARLEKLKTDINNLNDAPIF 984 FA+ L P W + + G + ++ + + Sbjct: 831 GFFAAILSYGHPAWEKLSIFLNFLIPKLPAPKEEDFSKGVLETIDMDSYRVEAKAALKMA 890 Query: 985 LDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQ 1044 +D D V G + ++ ++ ++ K +++ Sbjct: 891 MDDADASVEPVPSGGGGGKGEAVIDRLS----------VIIKTFNELFGNIQWKDEDKIR 940 Query: 1045 EWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGEN 1104 + + + KA++ + + A+ ++ + Sbjct: 941 KVIAEEIPARVAQDKAYQNA-QANSDKQNAKLEHDKALNRVVQELLSDHTELFKQFSDNP 999 Query: 1105 DWSSEQLSWL 1114 + WL Sbjct: 1000 SF----KRWL 1005 >UniRef50_C8VZC5 Type I site-specific deoxyribonuclease, HsdR family n=2 Tax=Bacteria RepID=C8VZC5_DESAS Length = 1034 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 123/821 (14%), Positives = 251/821 (30%), Gaps = 95/821 (11%) Query: 261 DSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDV 320 S L+F PE + + E+ + + + D VL V P+ V+E K++ IDV Sbjct: 115 QSFDLKFIDWEHPENNLWQVTDEFSVERADGKYV-WPDIVLLVNGLPLVVIECKKSGIDV 173 Query: 321 PARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYST 380 + + ++ + ++ ++ +Y T + Sbjct: 174 EKGVAQ---NTRNWQPDYIPHLFKYAQIIMAMNLNTVKYGTCGTTAEHFSVW-------- 222 Query: 381 NGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGM 440 RE + + + + E LLE++ N Sbjct: 223 --REKNYQWQQEKCSNVSPDGKVTAQDRTIVSILSKERLLELMRYFILYDNN-------- 272 Query: 441 SELGLRYYQEDAVRAVEKAIV----KGQQEILLAMATGTGKTRTAIAMMFRLIQSQRF-- 494 + RY Q AV+A K I KG + ++ + G+GK+ T + ++ ++I Sbjct: 273 VKKIARYQQFFAVQATMKRIKGEDNKGARGGVIWHSQGSGKSLTMVMLVKKIIADPDIGN 332 Query: 495 KRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVK 554 R + + DR +L +Q F T++ KGL D + S I V Sbjct: 333 PRFVLVNDRVNLDKQLRDNFARTQLRP---VRASTGKGLIDLLRDKSETIITTLVHKFYT 389 Query: 555 RTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK 614 + + ++VDE+HR + + ++ +A+K Sbjct: 390 AAKKRVK--IEDDNIFLLVDESHRSHSSELHDFMIDVLP-----------------NAIK 430 Query: 615 IALTATP-----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSK 669 I T TP L+T FG + Y AV DG ++ +II ++ Sbjct: 431 IGFTGTPLLKKHKLNTYAQFGPLIDSYPITRAVEDGVIVPLVYEGRIIPQDVTSEKIDDY 490 Query: 670 GEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT---GSQK 726 + + +N ++D + + V ++ + K Sbjct: 491 LKYIIAP------LNHERQEDMKRKWSRLLPLAQTRQRIDMVAFDIHEHFISYAGPKGFK 544 Query: 727 TLVFCVTNAHADMVVEELRAAF------------KKKYPQLEHDAIIKITGD-------- 766 ++ + A + ++ K+ +L + KI Sbjct: 545 AMIAASSRPAAIDLHRSIKKLGGIKTAVVISPENVKEGDELTGENKEKIRSFFKEEVEPL 604 Query: 767 -ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 + F ++++ D+L TG D P + + +R L Q Sbjct: 605 FGHNYEEYGEWAKNSFIGGEDVDMLIVKDMLLTGFDAPVAAVLYVDKPMREHALL-QALA 663 Query: 826 RATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITE 885 R R+ P K I D I+S L + M D E + Sbjct: 664 RVNRVYP--GKDFGLIVDYWGIFSKLNTAMDMYADEKSGMDGYDQ-----ADIENAILGA 716 Query: 886 ADGRSFAEHSHEQLVAKLQ-RIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFAS 944 D + E +H +L + + + + +S D +R++ + Sbjct: 717 VDQKRKLERAHSELRLVFEGKDFDRNSSDGWQSALADSDLRKVFYEKLSVFSRLLDLAMG 776 Query: 945 RLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTP 1004 + + + + N+ F +D + S+ + + + Sbjct: 777 SYAFYSAIGYDRIQQYKRDLLHFQKLRGAVLLRYNEKVDFSKYEDGIRSLLNNFVLSEPS 836 Query: 1005 QDFLEAFDSLVQR-SPNAQPALQAVINRPRDLTRKGLVELQ 1044 + +E L + + + + EL+ Sbjct: 837 RIIVEPVSIHDTEGMKAQLEKLDSKAAKGDAIRTRMDKELE 877 >UniRef50_B5ZAL0 Type I site-specific deoxyribonuclease, HsdR family n=12 Tax=Ureaplasma RepID=B5ZAL0_UREU1 Length = 1022 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 137/1042 (13%), Positives = 322/1042 (30%), Gaps = 123/1042 (11%) Query: 138 RGENLYHQEVLTLKQQLEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQ 197 E ++V+ + L+ + + + +++Q+ + AI ++ + + Sbjct: 8 YDEKYLEEQVIEKIKALDYEYIDPRSFLEKRDSKQEIIDWTKLDEAIRRINKRIEDYEVN 67 Query: 198 ARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAG 257 + ++ +L NA L + ++ I+ K +N ++R +ID Sbjct: 68 DIINKIQNELN--NANLLDRNKKLLSFMVHGISIWNQKEEIN----KTRKIID------- 114 Query: 258 WQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETG-NQGFADYVLFVGLKPIAVVEAKRN 316 R + D V+++ P+ ++E K Sbjct: 115 ------------LDRINNNDFVVTNQLIVRSTHPEWENQIPDVVIYINGVPVVIIELKTM 162 Query: 317 NID---VPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFK 373 + + RY + F + Sbjct: 163 KSSNDILLEAGAQIQRYVDFIQDIFSFNLFSIISNGAISKIGT----------------- 205 Query: 374 IPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQW 433 K +R+ + + ++ + P+ L ++L + N+ Sbjct: 206 -------------FPKKDDDFEIWRNEQFSSDIFDTIKFLLAPKNLFDLLRNFIFFTNKG 252 Query: 434 FADNPGMSELGLRYYQEDAVRA----VEKAIVKGQQE-ILLAMATGTGKTRTAIAMMFRL 488 +++ +YYQ ++ ++KA + QQ+ ++ G+GK+ + + ++ L Sbjct: 253 -------NKIFPKYYQYFGIKKGISSIQKAWDENQQKAGIIWHTQGSGKSLSMVMLVSNL 305 Query: 489 IQSQRFKRI--LFLVDRRSLGEQALGAFEDTR-INGDTFNSIFDIKGLTDKFPE-DSTKI 544 + KR+ L + DR+ L Q F T I + L + + Sbjct: 306 KKCLDLKRLTALVITDRKDLDGQLFNTFSICEDYLHQTPYQISSCEDLKKSLQDVKQDGV 365 Query: 545 HVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYR 604 + +T+Q + + I+ DEAHR + E + S Y R Sbjct: 366 YFSTIQKFNDEIE-----LSDRKDILIISDEAHRSHNNYLAIDENNEENNSNKPYSYLLR 420 Query: 605 RILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPP-----IQ 655 + +A+ I T TP + T +IFG+ +++YT A D ++ + + Sbjct: 421 KAFP--NAIFIGFTGTPIENKDVSTSEIFGDVIHKYTLSQATEDKSIVPINYENAQVEFK 478 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNEL 715 + + ++ E E + + ND + ++ + + L + + Sbjct: 479 LDEEKLKLIDEQNEKENQEIKNNHKKDANDIIVKKDIKKIEEILQILQSDERIKIIVKHF 538 Query: 716 TNYLDPTGSQ---KTLVFCVTNAHADMVVEELRAAFKKKYPQLE-----HDAIIKITGDA 767 + + K + + A+ E+ +++ + Sbjct: 539 IKHYEARRGVLKDKAMFVAMNRLCAEKYYHEILRNRPDWVNKIKLIITPNKKDSPELTKI 598 Query: 768 DKDARKVQTMITRFNK-ERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 + + +I +F I++ VD+L TG D+PS+ I F R ++ L Q R Sbjct: 599 IGSEQDRKNVINQFKDPNSEIKILIVVDMLLTGYDVPSLDVIYFDRVLKMHNLM-QAMAR 657 Query: 827 ATRLC-----PEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQ-TLVNEITDSET 880 R P + K + + D + I+ ++ + K + + + D Sbjct: 658 VNRKYIDKDNPNIKKEAGLVVDYIGIFKRIQEALKFYWDGNQTKNKFKFEEKYQNVDDIL 717 Query: 881 YKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFN 940 +A + ++ + VAKL E +K + V + Sbjct: 718 ANYNDALKNVYDKYFSDLNVAKLIDEKNYLALV---DEVFNKSLTSEFIHDVKNIRVAYK 774 Query: 941 GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD 1000 S L E+ S +F + L +K Sbjct: 775 MVISTLSEEIIERSNLLFATAAYIKNTNDGNVDYDEYNKALRESLKDSVAFFDIKEPEHK 834 Query: 1001 YDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKA 1060 +E+F S ++++ + + + L + L +++ + ++ L + Sbjct: 835 QIHKLVDIESFVSNIKKNEDMGNQ-----QKKQMLFNRFLNKIKNSVNISIIAKTKLSQK 889 Query: 1061 WKETRNE-----DIAARLIGHIRRAAVGDALKPFEERVDHAL--TRIKGENDWSSEQL-S 1112 + I +I D + E + + +Q Sbjct: 890 LEMVFERFKMDSLSYEEFIQYIFNEFGDDLINDEIENNEEKFYVKMFVDAVRLNEDQSDE 949 Query: 1113 WLDRLAQALKEKVVLDDDVFKT 1134 ++ +A + + + + Sbjct: 950 EIESIAYEIYDAITMQGKRLIE 971 >UniRef50_Q3SFH2 DEAD/DEAH box helicase n=11 Tax=Bacteria RepID=Q3SFH2_THIDA Length = 1009 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 121/919 (13%), Positives = 260/919 (28%), Gaps = 112/919 (12%) Query: 274 EPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN--NIDVPARLNESYRYS 331 + N+ + D VL + P+ E K V + + Sbjct: 115 QYAANRVGVIRQLRYSQRNTNE-LDLVLSINGIPVFTAELKNPMTGQTVTNAIAQYQHDR 173 Query: 332 KCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKT 391 + F E +G +PF +G Sbjct: 174 DHREPLFE-----FKRRALVHFAVDTEQVFMTTRLAGSATHFLPFNKGLDGGAGNPPDPA 228 Query: 392 KSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEP-----QKQNQWFADNPGMSELGLR 446 T + + + + + LL++ +K+ + + R Sbjct: 229 GRAY------RTAYLWEEVW---QRDSLLDIFARFIHLQVEEKRTDDGRKIKKETMIFPR 279 Query: 447 YYQEDAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLI------QSQRFKRIL 498 Y+Q AVR +E A L+ + G+GK+ T + RL + F ++ Sbjct: 280 YHQLRAVRELEDAARTEGPGHNYLVEHSAGSGKSNTIGWLAHRLASLHNESDHKVFDSVI 339 Query: 499 FLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL------ 552 + DRR L Q I + + +S I ++T+Q Sbjct: 340 VITDRRVLDRQLQDTIYQFEHRQGVVQKIDEDSRQLAEALTNSVPIIISTLQKFPFVARQ 399 Query: 553 ----VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF--------------- 593 + + + + R +++DEAH + E+ Sbjct: 400 LARMAEERREGADGILPTRRCAVIIDEAHSSQSGETATDLKEVLGGHVLREEAARYAVDE 459 Query: 594 --RSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGE--------PVYRYTYRTAVI 643 + + + + + A TATP T+ +FG P +RYT A+ Sbjct: 460 GVDNLDELYRSMAKRGRQTNLSFFAFTATPKHKTLAVFGRDEAGKAGQPFHRYTMSQAIE 519 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV 703 +GF++D + VER + + ++ Sbjct: 520 EGFIMDVLKNYTTYATYYKLVKASEDDPNVERKQAAKALARFMRLHPYNIAQKT---EVM 576 Query: 704 IPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI 763 + FN +++ G K +V + A A ++K ++ Sbjct: 577 VEHFNAVTRHKV------GGKAKAMVVTGSRLEAVRYKLAFDAYIREKGYSWI-KTLVAF 629 Query: 764 TGDADKDARKVQT--------------MITRFNKERLPNIVVTVDLLTTGVDIPSICNIV 809 +G+ D +T + +F+ +++ + TG D P + + Sbjct: 630 SGEVVDDELPGKTWTEVGMNGGIKEGVLPEKFDSSEY-QVLLVAEKYQTGYDQPLLHTMY 688 Query: 810 FLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMR--PVVVRPKVE 867 +++ I Q R R+ P K + D V+ ++ + + + Sbjct: 689 VDKRLAG-IQAVQTLSRLNRMHPL--KEDTFVLDFVNDRQEIKEAFKQYHEGAEMGEEAD 745 Query: 868 LQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIG-LATFNRDRSETIDKQVRR 926 + + + I + + + + D + + V+ Sbjct: 746 PNQMYAIKAELDASGIYLLEEMQRFIGIYFKPKQRQSPADHQAMNAALDPAVDRFRAVQE 805 Query: 927 LDELCQDAAG---VNFNGFASRLREKGPHWSAEVFNKLPGFI---ARLEKLKTDINNLND 980 DE + F + L + P+ +++ +L K T D Sbjct: 806 EDEEQAELWRGKLSAFRNLYAFLSQVAPYQDSDLERLYTFLRFLSPKLPKRTTGQRYSFD 865 Query: 981 APIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSL-VQRSPNAQPALQAVINRPRDLTRKG 1039 + L+ + D + L+ + + L ++I+ + Sbjct: 866 DEVRLEYYRLQKISEGSISLRDGKAELLDGPGEVGSGARHDEDVPLSSLIDVINERFGTD 925 Query: 1040 LVELQEWFDRQHFEESSLRKAWKETRNEDIAA----RLIGHIRRAAVGDALKPFEERVDH 1095 + Q F + + A ++ + AA + + E+ + Sbjct: 926 FTD-----ADQLFFDQIIEAAMEDGSLLEAAAVNPEEKFALLFAGLLETLFIERMEQNED 980 Query: 1096 ALTRIKGENDWSSEQLSWL 1114 R E D+ S W+ Sbjct: 981 IFARFMNERDFQSLVSKWI 999 >UniRef50_Q3ZWI1 Restriction enzymes type I helicase subunit n=1 Tax=Dehalococcoides sp. CBDB1 RepID=Q3ZWI1_DEHSC Length = 994 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 124/930 (13%), Positives = 260/930 (27%), Gaps = 129/930 (13%) Query: 259 QADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNI 318 S+ + A + + D +LFV P+ +EAK + Sbjct: 99 DEPSRNINLIDYTGVGNNDFLASNQVWI---QGIEHRRPDILLFVNGIPVVDIEAKTASH 155 Query: 319 ---DVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIP 375 D ++ RY K N + + + +P Sbjct: 156 GHIDWAEGAKQTGRYDKEIPNLYYSNCFCAGVNELRMKYGIP------------------ 197 Query: 376 FCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFA 435 G + + + + + M + LL+++ + + Sbjct: 198 ------GERLQYWQQWRDPYPHTHIPSFDEMKCTIYGLFDRTNLLDIIQNFIVFE----T 247 Query: 436 DNPGMSELGLRYYQEDAVRAVEKAI-----VKGQQEILLAMATGTGKTRTAIAMMFRLIQ 490 + + RY Q A + GQ+ ++ G+GK+ T + +L Sbjct: 248 EQSKTIKKIARYQQFRAANKIVARALNLDQESGQRRGIVWHTQGSGKSLTMLFAARKLWN 307 Query: 491 SQRFK--RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDST--KIHV 546 + K I+ +VDR L +Q +G + N + I+ L E I V Sbjct: 308 DSKLKQPTIIIVVDREQLQDQMIGEL--FKTNSENVAVAVSIQDLRRLVAEGDGYRGIIV 365 Query: 547 ATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRI 606 V ++ + ++VDEAHR D Sbjct: 366 TIVNKFEGMQIE----ISKRANIVMLVDEAHRTQYGDLGIFMRSAMP------------- 408 Query: 607 LDHFDAVKIALTATP----ALHTVQIFGE---------PVYRYTYRTAVIDGFLIDQDPP 653 +A LT TP +T + FG + RY+ ++ DG P Sbjct: 409 ----NASLFGLTGTPLELDDRNTPRAFGRKLGEDRFERYMDRYSIEDSLRDGAT----RP 460 Query: 654 IQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCN 713 I R V + ++ + + A + L P V N Sbjct: 461 IHYEVRATDWTVAYTDLDKKFEALFADRSPEERKALMGE---AKLDAILKHPKRIAQVAN 517 Query: 714 ELTNYLDPT---GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKD 770 ++ N+ K +V C + L + + D+ K Sbjct: 518 DIANHFIEHIRPNGFKAMVVCRDKEMCALYKTALDQLLAPEVSLIIISEDPTHDVDSIKP 577 Query: 771 ----ARKVQTMITRFNKE---------------RLPNIVVTVDLLTTGVDIPSICNIVFL 811 + + + F + I++ D+L TG D P + + Sbjct: 578 YYLGDTQRRNAVDDFKNPAPKSQEERDNPDNRFKRVEILIVCDMLLTGFDAPILQVMYLD 637 Query: 812 RKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTL 871 + +R L Q R R E+ K I D ++ L + Sbjct: 638 KSMRDHTLL-QAIARVNRPYSEL-KEFGLILDYFGMFEKLNDALNYDKNELGEVAFPYGK 695 Query: 872 VNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELC 931 ++ + ++ + + SH+ + L + + + L Sbjct: 696 FRDMFRTNITELLDLFIGIPHDGSHQSAMRVLIMLNDNDEKREQFEKLFRNVRVLFETLQ 755 Query: 932 QDAAGVNF--------NGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPI 983 D +F + L++ P E+ + +L + D+ + + Sbjct: 756 PDEFLRDFLYDYEWLCKLYMIYLKKFYPAEHFEISEEDGAKTRQLIREHVDVKEIEEEFP 815 Query: 984 FLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKG---- 1039 +D+ ++ D D+ ++ + ++ + R + + + Sbjct: 816 TYKLDENYLTKIKDMNPNAKALDIEAMLDAEIRIRLDEDEDVRPLSERLKHIIEQKRAGT 875 Query: 1040 LVELQEWFDRQHFEESSLRKAWKETRNE--DIAARLIGHIRRAAVGDALKPFEERVDHAL 1097 L + + + + + + R IA + + G+A+ + + A Sbjct: 876 LAGITLLKELEDLTKQVVDVIQETQRPVVDSIAKEVAKRVPNIPQGEAMAVAQAIIAKAK 935 Query: 1098 TR-----IKGENDWSSEQLSWLDRLAQALK 1122 + + + LA K Sbjct: 936 EKCFENWFLQNYMDTELYREFTILLATQFK 965 >UniRef50_Q0A7Q4 Type III restriction enzyme, res subunit n=9 Tax=cellular organisms RepID=Q0A7Q4_ALHEH Length = 1029 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 140/1056 (13%), Positives = 298/1056 (28%), Gaps = 126/1056 (11%) Query: 162 AQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQE 221 +E+ + +L + + + L + A Q E Sbjct: 1 MAGHSELAFETAIEASLTSAGGYEKRNASAYDEALAIFPEDVTGFLQDSQAAKWGQLEAL 60 Query: 222 RKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPE----PGV 277 + ++ + L + + + ++ + G R + G PE + Sbjct: 61 LGEKTRATVLHSLAKELEI--KGTLHVLRYGFKCYGKTFRLAHFRPNSGMNPEAAAAYAL 118 Query: 278 NKAIAEWPT-----------GKDETGNQGFADYVLFVGLKPIAVVEAKR--NNIDVPARL 324 N+ K + D L + P+ E K + Sbjct: 119 NRLTVTRQVAFTSVMKKADGPKSTKNRRCIIDVTLSLNGLPVVTAELKNSLTGQRAADAV 178 Query: 325 NESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGRE 384 + + D F P+ GK +PF + Sbjct: 179 KQYKQDRDERDLLFA-----FKKRALVHFAVDPDEAWMTTRLKGKDTVFLPFNRGHDHGA 233 Query: 385 YRAT--MKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSE 442 K+ + +V + ++ L + E + K ++ + Sbjct: 234 GNPPVENNWKTHYLWDEVLEKDSLMDILQRFMHLE-----VKERQVKTDKGVRTIRKETM 288 Query: 443 LGLRYYQEDAVRAVE-KAIVKG-QQEILLAMATGTGKTRTAIAMMFRLIQSQR------F 494 + RY+Q DAVR + A G L+ + G+GK+ + + RL F Sbjct: 289 IFPRYHQLDAVRRLVVHARANGSGHNYLVQHSAGSGKSNSIAWLAHRLASLHDAEDQKVF 348 Query: 495 KRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQS--L 552 ++ + DRR L +Q I + + T I + T+Q Sbjct: 349 HSVVVVTDRRVLDQQLQNTIYQFEHKTGVVEKIDENTQQLAQALSGGTPIIITTLQKFPF 408 Query: 553 VKRTLQSDEPMP-------VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYR- 604 + + L + E + ++VDEAH + + + ++ A + Sbjct: 409 ISQALSTLEKKGTGVKISTAGKRFAVIVDEAHSSQSGETASELRGMLNKDGIEAAIAAQL 468 Query: 605 ---------------------RILDHFDAVKIALTATPALHTVQIFGE-------PVYRY 636 + + A TATP T +F E P + Y Sbjct: 469 SDEEDDALSDEAKAAILRDSLKRARQPNLSFFAFTATPKFKTKALFDEPGPSGSSPFHEY 528 Query: 637 TYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVA 696 + R A+ +GF++D R + +V R + Sbjct: 529 SMRQAIEEGFIMDVLQNYTTYKRFFGLIKQVENDPEVPRKKAAKALSRYLELHP------ 582 Query: 697 DFNRGLVIPAFNRAVCNELTNYL--DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYP- 753 + I + Y+ + G K +V + A K Sbjct: 583 -----VNIEQVVSVIVEHFRLYVMSEMGGRAKAMVVTGSRLAAVKYKLAFDRYIKDNGYG 637 Query: 754 ------------QLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVD 801 + D T A D + F +E +++ + TG D Sbjct: 638 GIRSLVAFSGSVEDPDDPGSAYTEVAMNDGLAESELPETFEREDY-RVLLVAEKYQTGFD 696 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCV----DIYSTLESVDTM 857 P + + ++++ + Q R R+ P K + D DIY + + Sbjct: 697 QPLLQTMYVVKRLAG-VQAVQTLSRLNRVAP--GKARTFVLDFANEEDDIYQSFKPYYEA 753 Query: 858 RPVVVRPKV-ELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDR 916 PV +L L +++ + + + + + ++ + + A + Sbjct: 754 TPVGENADPHQLSELQHKLMGWAIFAPDDVNAFADVWYRSKRDHSASDHRVMNAVLDAVV 813 Query: 917 SETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTD-- 974 + D++ +E + + L + P+ +E+ L KL Sbjct: 814 ARFSDREEAEQEEFRGQLTA--YRNLYAFLSQIIPYQDSELEKFYAFVRNLLSKLPPPGD 871 Query: 975 -----INNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVI 1029 +++ F S+ G+ + + S V+ A P V Sbjct: 872 GQAFALDDEVALRYFRLQQMTEGSIDLGTGEAYPLKGPTDVGTSGVKE--EAVPLSSLVE 929 Query: 1030 NRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPF 1089 Q +FD+ K + R ++ R + + Sbjct: 930 KLNERFGTDFTEADQLFFDQITASAEENEKIVEAARANNLPNFSAFLER--MLDELFIDR 987 Query: 1090 EERVDHALTRIKGENDW-SSEQLSWLDRLAQALKEK 1124 E + +R+ + ++ S+ + + + ++E+ Sbjct: 988 MENNEDIFSRVMTDKEFRSAAHEHLAEEIFKRVREE 1023 >UniRef50_Q0AUQ7 Type I restriction-modification system, R subunit n=2 Tax=Bacteria RepID=Q0AUQ7_SYNWW Length = 1061 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 128/928 (13%), Positives = 275/928 (29%), Gaps = 89/928 (9%) Query: 261 DSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNID- 319 S T+ + A + A+ ++ T + D VLF+ P+ +E K + Sbjct: 117 KSPTVHYIDFANRDNNRFIAVCQFKVRILGTEHHIIPDIVLFLNGLPVVAIECKSPRVKD 176 Query: 320 -VPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCY 378 +P +++ RYS+ L +Y+ + E + T ++ F Sbjct: 177 AIPEAIDQLMRYSEQRGEKGEGSAPLFYYNQIIIATCRNEAKFGTITTHSEKYF------ 230 Query: 379 STNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNP 438 + + + + + LL+++ + D Sbjct: 231 ----YRWADPYPRTIDELDHAGSSPNDQQRLVAGMLDHDNLLDLIRTFTLFSAN---DKG 283 Query: 439 GMSELGLRYYQEDAVRAVEKAIVKGQ----QEILLAMATGTGKTRTAIAMMFRLIQSQRF 494 ++ RY Q AV+ K +++G+ + ++ G+GK+ T + M+ + + Sbjct: 284 ETIKIMGRYQQFRAVKLAVKRLLEGKTPRERSGIIWHTQGSGKSLTMMFMVREMYRHTEL 343 Query: 495 KR--ILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL 552 + ++F+ DR L EQ + T I+ L DS+ + +A + Sbjct: 344 SKWKVIFVTDRTQLEEQLSETSQSIGF---TVKVADSIRNLKTLMRSDSSDLVMAMIHKF 400 Query: 553 VKRTL-QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD 611 + L ++ + + Y ++ DEAHR + + Sbjct: 401 READLTETFPELNTSPYILVMTDEAHRSQYAMLGANLDKGIP-----------------N 443 Query: 612 AVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGE 671 A +I T TP T ++FG+ + +YT R ++ DG ++ + + + Sbjct: 444 AARIGYTGTPIDKTERVFGDYIDKYTMRQSIEDGVTLEIVYEGRTHNAEVTDQEEMDAAF 503 Query: 672 QVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFC 731 + + L A I A + ++ P G K + Sbjct: 504 EDVFSDYNLQQRLQILGYGSR--EAYLEAEPTIAAKAEDMVAHYLTHVFPNG-FKAQIVA 560 Query: 732 VTNAHADMVVEELRAAFKKKYPQLEHD--------------AIIKITGDADK-------- 769 + A + + AA +LE++ + I+G+ + Sbjct: 561 TSREAAVRYKKFVDAALSNAIIELENNNPLRLDLDRLRKLKTDVIISGNHNDKKHLKVYS 620 Query: 770 DARKVQTMITRFNKE---------RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILY 820 D K + I F I++ ++L TG D P + R + + L Sbjct: 621 DKSKHEVSIKSFKLSFDAEENGVTGDMGIIIVNNMLLTGFDAPVEQVMYLDRVIVAHNLL 680 Query: 821 EQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSET 880 Q R R+ K + D V I L + +V E + Sbjct: 681 -QAIARVNRVS-GTGKDKGYVVDYVGIGHHLRRAIDNYDEREQKEVIDTLSFPEEELRDL 738 Query: 881 YKITEADGRSFAEHSHEQL--VAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVN 938 +A + + + L + D + R L+ + + Sbjct: 739 VTSHKAVMELISNYGLKDLSDYDAFFDLFYDEDARFDFMLVFKQFTRCLNLVFPSREALK 798 Query: 939 FNGFASRLREKGPHWSAEVFNKL-------PGFIARLEKLKTDINNLNDAPIFLDIDDEV 991 + L E + ++ P + ++ +DD+ Sbjct: 799 YMADYQALNEINVLAAKHFRDERLSMKDVPPKLRSITDQYLESKGIDVKVKPISILDDDF 858 Query: 992 VSVKSLYGDYD-TPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQ 1050 + A + + P LQA + + + + + Sbjct: 859 EKQVGKRNRAKTKAAEVEHAIRHHLDIELDDDPDLQASFSAALAEIFQQFRDNWQKIYEE 918 Query: 1051 HFE-ESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSE 1109 + + A KE + + R + G+ ++ Sbjct: 919 LEKLRIRIINASKEPTYGLHRKKQMPFFRMFNKEIFGAGDADHGKTKFEAADGKGTYTVN 978 Query: 1110 QLSWLDRLAQALKEKVVLDDDVFKTGNF 1137 + + L +E + + K F Sbjct: 979 EEDKISLLVDLTQEAFFIVERELKLTGF 1006 >UniRef50_A5P9B2 Type I restriction-modification system, R subunit n=2 Tax=Proteobacteria RepID=A5P9B2_9SPHN Length = 1085 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 144/1073 (13%), Positives = 298/1073 (27%), Gaps = 146/1073 (13%) Query: 154 LEQQVREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAE 213 L + ++ +L + + E + + R A+ A + E Sbjct: 22 LARLGWRYVSRAEGEAQRRGRLEQVILEDVLAERMVAINRIRQRGRTHAVPDDAARELIE 81 Query: 214 LAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARP 273 K+ +R A ++ + L L E +D ++ + + L+F P Sbjct: 82 KLKEAASDR-AIGLMPANERVTNLLKLGES-----VDVEVDG---EKRGRQLKFIDWDTP 132 Query: 274 EPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYS-- 331 + AE+P ++ + D VLFV P+ V+E K + I+ +++ R Sbjct: 133 ANNLFHMTAEFPVRRERREDTRRPDIVLFVNGIPLVVIEVKCSAIETQQGISQQLRNQAP 192 Query: 332 KCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFC-------------- 377 F +L + + A + + ++ Sbjct: 193 DEIPRLFTVSQMLIAANDSDPRYATSGTPSKFWSLWREEEIADSQVERIVNAGLDPDEAS 252 Query: 378 YSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADN 437 + R + + L RP+ LL+++ N Sbjct: 253 KIWIDFDRHRRTHDGLMDPGAGGRLPNQLDRLLISLCRPDRLLDIVRGYTLFDN------ 306 Query: 438 PGMSELGLRYYQEDAVRAVEKAIVKG-----QQEILLAMATGTGKTRTAIAMMFRLIQSQ 492 + RY Q VR + + + ++ ++ G+GK+ T + + + + Sbjct: 307 --GVKKVARYQQYFGVRRSLERVRQHDDDGHRKGGVVWHTQGSGKSLTMVMLAGAIEREF 364 Query: 493 RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL 552 R + + DR L Q F + L + + + Sbjct: 365 GKARFVLVTDRVDLDRQLTQTFRNAG---KLPQQATRGSDLIRMLKDK-RPVITTLIHKF 420 Query: 553 VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDA 612 + ++VDE+HR + + R++L A Sbjct: 421 KAGLKSAGSFTDPDTDIFVLVDESHRSQTVKDIDSLHR-----------QMRKVLPG--A 467 Query: 613 VKIALTATP----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLS 668 I T TP T FG ++ Y AV D ++ + + AQ+ Sbjct: 468 AYIGFTGTPLLKREKSTFDRFGGLIHDYKIDQAVADKAVVPLLYEGRHVEMEAQQANLDK 527 Query: 669 KGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDP---TGSQ 725 E + + D + D +A + + V +++ + Sbjct: 528 WFE------RKTRNLTDGQKADLKKRIARAQVVQGVEPWLNEVAQDVSEDFERTMLGTPY 581 Query: 726 KTLVFCVTNAHADMVVEELRAAF--------------------KKKYPQLEHDAIIKITG 765 K + A ++ + L + I K+ Sbjct: 582 KAQLVAPFKREAVLLHQMLEEIGIVESAVIISKSDDRDGHEDVGDDDDDIVQSFIKKVEA 641 Query: 766 DADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 A+ + I F ++++ VD L TG D P + + +R Q Sbjct: 642 KQPL-AKYEEDTIRAFKNGVGVDVLIVVDKLLTGFDAPRNQTLYIAKNLRDH-KLLQAIA 699 Query: 826 RATRLCPEV----------NKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEI 875 R RL +K +I D V I L+ T Sbjct: 700 RVNRLFSSEEKDEDGDALYDKEHGRIVDYVGILEDLDQALTAYSAF-------------- 745 Query: 876 TDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAA 935 E D E++ + L + D + L + Sbjct: 746 -----EGYDEGDVAQALVSIREEVDTLPDKHAALLDLFKGVGNHYDPEAYALHLRDELRR 800 Query: 936 GVNFNGFASRLREKGPHWSAEVF--NKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVS 993 ++ + R + ++ F N P IA ++ L + Sbjct: 801 KRFYDRLSDFARTLQTAFGSDQFVENTEPRVIANYKQDLKRFEALRR------------A 848 Query: 994 VKSLYGDYDTPQDFLE---AFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQ 1050 V+ YGD + D+ + +L+ + +A + V P D+ + + + Q Sbjct: 849 VRLRYGDAEEDYDYKRYQASIRALLDKHIDATELVAIVP--PVDIFDEE--NFKRTVEEQ 904 Query: 1051 HFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRI-KGENDWSSE 1109 +S+ A I R A+ + + E D+ ++ Sbjct: 905 TGTAASVADAITSATQRSITER---MDEDPAMYRRFAKMVQDIIDGFREGRLSEKDYLAK 961 Query: 1110 QLSWLDRLAQALKEKVVLDDDVFKTGNF--HRRGGKAMLQRTFDDNLDTLLGK 1160 +++ + + K + G T + + Sbjct: 962 AHEIREQVVEGSRAKTEETPASLRGDPLGSAIYGQARDAVGELAGEQSTEISE 1014 >UniRef50_C1YVI0 Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YVI0_NOCDA Length = 1085 Score = 349 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 124/1030 (12%), Positives = 279/1030 (27%), Gaps = 124/1030 (12%) Query: 128 FPVPVFVLPERGENLYHQEVLTLKQQLEQQVREKAQTQAEVE-----AQQQKLVALNGYI 182 + + P + E L+ E E + Q +++ L Sbjct: 5 ADDGIPIYPRDPDE-AQWEAWALEWLAEPCGWEPVRGQDLAPRKDGSGERRAWDDLLLTE 63 Query: 183 AILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLN-LS 241 + + + + +L + + + + + Sbjct: 64 RLRSALTRINPQLPDDAVDEVIEELGRRESSDPFHEFHRLHTLLTQGVKVEVTDPDTGQT 123 Query: 242 EEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVL 301 E+ + ID + N+ + G D V Sbjct: 124 VTETAWPID---------------FNDPHSNAFVAANQVTVKDLAGSASRTRPRRLDIVG 168 Query: 302 FVGLKPIAVVEAKRNNIDV--PARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEY 359 +V P+AV E K + + Y + + + D + V Sbjct: 169 YVNGIPLAVFELKAAGSEDGSREAHAQLLTY-RTEYGATALAPVAFAIASDGITARVGTP 227 Query: 360 ETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEEL 419 T W+ + + A + D + + P Sbjct: 228 HTPWEHMAPWEV-------------NDAGDPLELAAGQDDHEHLVALESLVSGVFGPVRF 274 Query: 420 LEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKA----IVKGQQEILLAMATGT 475 L++L + + + +Q AV + + ++ G+ Sbjct: 275 LDLLENFLAFSRDEGSTVDTVRLAKA--HQYIAVNKAIDRTITAVSSNGKIGVVWHTQGS 332 Query: 476 GKTRTAIAMMFRLIQSQ--RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGL 533 GK++ + ++ R I+ L DR L Q F + + + + L Sbjct: 333 GKSKEMEFYAAKALKHPALRNPTIVVLTDRLDLDSQLYATFAASALLPEEPKQAALSEHL 392 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEP-----MPVARYDCIVVDEAHRGYILDKEQTE 588 + S I T+Q + + + R ++VDEAHR + E Sbjct: 393 SHLLERPSGGIVFTTLQKFRITKDEKEAGLQHRVLSARRNVIVIVDEAHRSHYGLLE--- 449 Query: 589 GELQFRSQLDYVSAYRRILDHFDAVKIALTATP----ALHTVQIFGEPVYRYTYRTAVID 644 Y R L +A IA T TP T +FG+ + Y AV D Sbjct: 450 ---------GYAKNLRDALP--NAAYIAFTGTPIAAADRDTRAVFGDDIDVYDLTRAVRD 498 Query: 645 GFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVI 704 G + + I + + + + R +++ + +A + + Sbjct: 499 GATVRVFYENRHIPVSLPQDIDPELLD--GRAEDLTAELDEEERKRANRALAAYEDVVGS 556 Query: 705 PAFNRAVCNELTNYLDPTGS-----------------QKTLVFCVTNAHADMVVEELRAA 747 P R + ++ ++ K ++ ++ + + Sbjct: 557 PERIRKLAADIVDHWKQRREEMGKLLVTTGENPRPSPGKAMIVGLSRKVCADLYAAIIQL 616 Query: 748 FKKKYPQLEHDAIIK--ITGDADKDA---------RKVQTMITRFNK-ERLPNIVVTVDL 795 + + D +IK TG A +++ + R E +V+ L Sbjct: 617 EPTWHSDDDADGVIKCVYTGQASDPEPTRTHVRTPTRIKAIQRRATDPEDKLELVIVQSL 676 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD 855 TG D P + + + +R L Q R R K S + D + I L Sbjct: 677 WLTGFDSPPLHTLYLDKPMRGAALM-QAIARVNRRF--GEKPSGLVVDFLGIADKLTQAL 733 Query: 856 TMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVA-KLQRIIGLATFNR 914 + + + + V+E + DG + + + + + Sbjct: 734 MEYTLTDQDERPVGREVSEAVAIVQEQHHILDGILHGLNWRLTRDSGRPKAFVNAVLDAV 793 Query: 915 DRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTD 974 + + + + + + F + Sbjct: 794 EFLQQPEPDLEEGRPTLVRRFTKHARDLVRAFALCPTEPELDPIRPDLKFFDSVRHYVVK 853 Query: 975 INNLNDAPI-FLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPR 1033 ++ A D ++++ L + ++ +++ + P+ + + R R Sbjct: 854 LDTEAKAARGLATAADVELAIRQLTASAVAADEVVDIYEAAGLQKPDLSHLDEEFVRRLR 913 Query: 1034 D----------LTRKGLVELQ-----EWFDRQHFEESSL----RKAWKETRNEDIAARLI 1074 + L R E++ ++ F E L R + + A+++ Sbjct: 914 ESERPHLAIEALRRSIEREVKAVYPHNVVKQEKFVEKLLHTMNRYRNGALTSAAVIAQMV 973 Query: 1075 GHIRRAAVGD 1084 + + Sbjct: 974 ELAKEVSADR 983 >UniRef50_C7QRQ2 Type III restriction protein res subunit n=4 Tax=cellular organisms RepID=C7QRQ2_CYAP0 Length = 984 Score = 348 bits (893), Expect = 6e-94, Method: Composition-based stats. Identities = 133/1012 (13%), Positives = 289/1012 (28%), Gaps = 109/1012 (10%) Query: 173 QKLVALNGYIAILEGKQQETEAQTQARLAAL--EAQLAEKNAELAKQTEQERKAYHKEIT 230 +K + +LE + + L + L NA ++ ++ + Y + Sbjct: 5 EKNFESDIQAYLLENGYHSRTSNDYDKKLCLIPQDVLNFINATQPQEWQKYQTQYGDDAQ 64 Query: 231 DQAIKRTLNLSEEE-SRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEW---PT 286 + ++R ++ + ++ L+ G + R S E + Sbjct: 65 TKLLQRLAQQIKKRGTVEILRKGLKANGCKFKLAYFRPSTALNDETQRLYQGNFFSLIRQ 124 Query: 287 GKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEH 346 NQ D +F+ P+ E K + N +Y + RET+L Sbjct: 125 FYYSEKNQNSIDLAIFLNGLPLFTCELKNSFKG-QTVENAIKQYRNDREP---RETVLSF 180 Query: 347 YSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNM 406 P GK+ +PF + T + Sbjct: 181 GVCLSHFAVDPNLVYMTTHLQGKKTKFLPFNQGRDNGHGNPPSALS--------YPTAYL 232 Query: 407 SKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQ-- 464 + + + L++ ++ ++++ + RY+Q D + + + Sbjct: 233 WQQIWQKDSILNLIQNFITQYEEEDDKGNKTGEKKLIFPRYHQLDTINRLINHAKDHKTG 292 Query: 465 QEILLAMATGTGKTRTAIAMMFRLIQSQR------FKRILFLVDRRSLGEQALGAFEDTR 518 Q+ L+ + G+GK+ T + +L+ F IL + DR++L +Q + Sbjct: 293 QKYLIQHSAGSGKSNTIAWLAHQLVSLHEREDNRVFDSILVITDRKALDKQLQRNLKQFE 352 Query: 519 INGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHR 578 +I + E+ I V T+Q Q + I++DEAH Sbjct: 353 TTSGVVENIDKTSRQLKEALENGKNIIVTTLQKFPGVIDQINSLKGQKF--AIIIDEAHS 410 Query: 579 GYILDKEQTEGELQFRSQLDYVSA-YRRILDH---------------FDAVKIALTATPA 622 + + + L+ + I D+ + A TATP Sbjct: 411 SQTGENSRQLKTVLSTQTLEEAETQEQDIEDYIEDRIEEAARTRGNLPNLSYFAFTATPK 470 Query: 623 LHTVQIFG--------EPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 T+++FG +P Y+ R A+ +GF++D + + Sbjct: 471 PKTLELFGIKQPDGTFKPCSLYSMRQAIEEGFILDVLQNYTTYQTYFSLLKTVENDPHYD 530 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTN 734 R + N + ++ F+ V +++ K ++ + Sbjct: 531 RNKAGRLLRNFVDLHPHNINAK---VAIIAEHFHNNVAHQI------NNQAKAMIVTRSR 581 Query: 735 AHADMVVEELRAAFKKKYPQLEHDAIIKITGDA-------------DKDARKVQTMITRF 781 HA L ++ + T + Sbjct: 582 LHAVRYKLALDNYLRENGYPYQSLVAFTGTVKDGGRDFTETGMNTASSGVSIPEKATADT 641 Query: 782 NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKI 841 + L ++ + TG + P + + +K+ Q R R + K S I Sbjct: 642 FNQNLYKFLIVANKFQTGFNQPLLTAMYVDKKLGGVN-AVQTLSRLNRTYSQ--KESTVI 698 Query: 842 FDCVDIYSTLESV--DTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQL 899 D + ++S + V+ + ++ + + + Y A + + Sbjct: 699 LDFANEIDVIQSAFENYYDRTVLSQETDVNLVYDIQQQLDDYDFYTASDITDFAQIYFNP 758 Query: 900 VAKLQRIIGLATFNRDRS-ETIDKQVRRLDELCQDAAGVN-------------FNGFASR 945 A R+ + DR E + + +D + F Sbjct: 759 KATQDRLHSILMPVIDRYQEATEAEQFSFRNKLKDFIRLYRFIGQLIGCPDSELEQFYEF 818 Query: 946 LREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQ 1005 R P +E + I I L + + G + P Sbjct: 819 ARHLAPKLPFAQQQLPLEVQQNIELSQYRIQRTYTGQIDLKRGERQLDPIIAAGTGNPPV 878 Query: 1006 DFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKG---LVELQEWFDRQHFEESSLR---- 1058 + E ++++ + T + +L+ D ++SL+ Sbjct: 879 EDREPLSVIIEQ---------LNQQFGTNFTEDEQVFIEQLEHKLDNSDSLQASLKINSL 929 Query: 1059 KAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQ 1110 + + T N + I + + L + +Q Sbjct: 930 ENVRLTFNNLTNEFMQEMIESNFNFYKHFNDDSEFANLLLNWLFQRFLERQQ 981 >UniRef50_B3ENS5 Type III restriction protein res subunit n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3ENS5_CHLPB Length = 992 Score = 348 bits (893), Expect = 7e-94, Method: Composition-based stats. Identities = 131/913 (14%), Positives = 276/913 (30%), Gaps = 97/913 (10%) Query: 262 SKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR--NNID 319 T ++ +R N + E ++ D +F+ PI +E K + + Sbjct: 107 EPTNPVAEESRRLYQENLLHVQRQVKFSE-SDEKSLDMGIFLNGLPIFTIELKNQISGQN 165 Query: 320 VPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYS 379 V + + + F + + +G + +PF Sbjct: 166 VGHAMKQYKNTRDPKEPLFR------FKRCLAHFAVDNDLVYVATELAGAKTQFLPFNQG 219 Query: 380 TNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPG 439 +G K T + + + + R +L++ + Sbjct: 220 NDGGAGNPPCKI--------GYATSYLWQEVWKKPRILDLIQRFIRVMDVLDDKGKKTDK 271 Query: 440 MSELGLRYYQEDAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLIQ------S 491 ++ R++Q VR + + + L + G+GKT + L Sbjct: 272 QRQIFPRFHQLTCVRELGADAQQHGAGRRYLNQHSAGSGKTNCIAWLANSLATLHTKEGQ 331 Query: 492 QRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDK----FPEDSTKIHVA 547 F ++ + DRR + Q +I G+T K ED +I V Sbjct: 332 PVFSSVIVISDRRVIDRQLQRTLTQVIETPGMLVNIAADDGMTSKDLKRALEDGKRIIVT 391 Query: 548 TVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYV------S 601 T+Q + ++VDEAH Q ++ S D + Sbjct: 392 TLQKFGVIMDSMGD--LPGERFAVIVDEAHSSQAGQSAQAVQKVLSYSSEDEQKDEEEKT 449 Query: 602 AYRRILDHF-------DAVKIALTATPALHTVQIFG--------EPVYRYTYRTAVIDGF 646 RIL+ + A TATP T+Q FG +P YT R A+ + F Sbjct: 450 TEDRILEELKTRGPQKNVSYFAFTATPKPETLQQFGTKHKDGTFKPFSLYTMRQAIEEKF 509 Query: 647 LIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA 706 ++D + + + E + + + ++ +++ Sbjct: 510 ILDVLKNYTTYDQYWALLKKVKDDPEFEEVKAKSLLKQFVSRHERTIAKK---VAIIVAH 566 Query: 707 FNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD 766 F +V ++L G K ++ + HA + A KKK + Sbjct: 567 FQASVSDKL------GGKAKAMIVTSSRLHAVRYKLAVDACLKKKGIPFKALVAFTDVVK 620 Query: 767 ADKDARKVQTM----------ITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRS 816 KD ++ RF + ++ TG D P + + +K+ S Sbjct: 621 DSKDGKEYTEANMNGFPEAATADRFEADEY-RFLIVASKFQTGFDQPKLLAMYVDKKL-S 678 Query: 817 RILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLES--VDTMRPVVVRPKVELQTLVNE 874 + Q R R V K + D + +E + + + + L N Sbjct: 679 GVACVQTLSRLNRTM--VGKEETFVLDFENTAEDIEKGFQPFYDRITLSKETDPNQLYNI 736 Query: 875 ITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDA 934 TD + + I K++++ L D K+ +++ + Sbjct: 737 RTDLDKFGIHTEADLKAFADQWFAPKPKIEKLHALT----DPVAEKWKKEGEEEQVDYKS 792 Query: 935 AGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSV 994 +F + + P + L KL + + +++ Sbjct: 793 KARDFVKLYAFMSHLVPLKDTGLAKLDVFLRFLLPKLPAKKGETPLEVLGMVDMEKLAVR 852 Query: 995 KSLYGD--YDTPQDFLEAFD-----SLVQRSPNAQ-PALQAVINRPRDLTRKGLVELQEW 1046 K D ++ ++ + +L + ++ + R + + + + Sbjct: 853 KKDKKDIGLKRGEEKVDPLNYGGGATLSEEEREQLSKIIEDLNTRFNTSFTEDEIMVIKQ 912 Query: 1047 FDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDW 1106 +++ E+ +L++ K +AA + A FE+ V+ K ++ Sbjct: 913 LEKKIGEDEALQQQLKNGSPHAVAATFEQVAKDA--------FEDLVNDNFKFYKKVSED 964 Query: 1107 SSEQLSWLDRLAQ 1119 + RL + Sbjct: 965 DEVSKEFFARLFE 977 >UniRef50_C3NPG6 Type I site-specific deoxyribonuclease HsdR family n=7 Tax=Bacteria RepID=C3NPG6_VIBCJ Length = 1260 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 145/1078 (13%), Positives = 319/1078 (29%), Gaps = 136/1078 (12%) Query: 167 EVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYH 226 E +Q + L + A + + + K + T E + Sbjct: 5 EERLEQAIIELLGKEGYPHTRGEVIERAPEDVLIKSDLREFLAKRYQAEGITAYEIEQII 64 Query: 227 KEITDQAIKRTLNLSEEESRFLIDA-QLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWP 285 ++ + ++ +F+ D L++ ++ E + + + Sbjct: 65 HKLEYLPASDLYDTNKAIMKFVSDGFLLKREDATQKDLYIQLIDYVDLENNRYRIVNQME 124 Query: 286 TGKDETGNQGFADYVLFVGLKPIAVVEAK---RNNIDVPARLNESY-RYSKCFDNGFLRE 341 E D +L++ P+ V E K R + + RY + F Sbjct: 125 IQGYEL---RIPDGILYINGLPLVVFEFKSAIREEATIYDAYKQLTTRYDRDIPELFKYN 181 Query: 342 TLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVR 401 L + P E+ + + +G D Sbjct: 182 ALCVISDGVNSKMG---------------SYFAP-------YEFYYSWRKITGAEKLDKD 219 Query: 402 DTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIV 461 ++ + + +++ + + ++ RY Q A + I Sbjct: 220 GIDSLFTMISGLFNKKRFTDVIRHFIYFPD----TSSKQEKIVCRYPQYYAATKLFANIK 275 Query: 462 KGQQ----EILLAM----------ATGTGKTRTAIAMMFRLIQ--SQRFKRILFLVDRRS 505 K + L ATG GK+ T + + L++ I+ + DR Sbjct: 276 KHMKCFDEHGKLVSGDGKGGTYFGATGCGKSYTMLFLSRLLMKDVELGSPTIILITDRTD 335 Query: 506 LGEQALGAFEDTR--INGDTFNSIFDIKGLTDKFP-EDSTKIHVATVQSLVKRTLQSDEP 562 L +Q G F + + + S+ L + S + + T+ + E Sbjct: 336 LDDQLSGQFTNAKGYVGDQNIISVESRAELREHLKGRKSGGVFLTTIHKFT----EDLEL 391 Query: 563 MPVARYDCIVVDEAHRGYIL-DKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP 621 + + DEAHR I +++ T E + + L +A + T TP Sbjct: 392 LTERTNVICISDEAHRSQINLEQKITVTEDGVKKTYGFAKYLHDSLP--NATYVGFTGTP 449 Query: 622 ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGE 681 T+ +FG V YT +V D + + + +G L + E+ + + Sbjct: 450 IDATLDVFGAVVDSYTMTESVFDEITVRIVYEGR-AAKVLLDGRQLEEVEKY-YKACEEA 507 Query: 682 VINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT------GSQKTLVFCVTNA 735 N+ D +A + L P +A+ + + + K + C + Sbjct: 508 GANEYQIDKSKTAMASMSTILGDPDRIKAIAKDFVEHYEKRVEEGTTQKGKAMFVCSSRE 567 Query: 736 HADMVVEELRAAFKKKY------------------PQLEHDAIIKITGDADKDAR----- 772 A +EL A + + + +T D D D Sbjct: 568 IAYQFYKELIALRPEWDEVKFCEDGATLSESDKKKVKPMERVKMIMTRDNDDDKELWNKL 627 Query: 773 ----KVQTMITRFNKER-LPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 + + +F + I + VD+ TG D+P + I + ++ L Q R Sbjct: 628 GSKEYRKELDRQFKNGKSNFKIAIVVDMWLTGFDVPFLDTIYIDKPLQKHNL-IQTISRV 686 Query: 828 TRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPK-VELQTLVNEITDSETYKITEA 886 R K + + D + I + + +++ V + D + Sbjct: 687 NRKFE--GKENGLVVDYIGIKKQMNLALSQYTAGQDQNLEDIKQSVIIVKDHLSLLDGLF 744 Query: 887 DGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRL 946 + + + +L + A F + + L + ++ Sbjct: 745 HKFDSKPYFNGTPLEQLHCLNASADFALRTKKFEKTFMDLTKRLKSAYDICVGSSELTKT 804 Query: 947 RE----KGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYD 1002 + VF G +E++ + +L + D +E+ + G Sbjct: 805 HKDKIHYYLAVRTIVFKITTGGAPDVEQMNRRVRDLVKDALISDGVEEIFKLGEKDGGE- 863 Query: 1003 TPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHF----EESSLR 1058 ++ FD + + + K + E ++ + + + L Sbjct: 864 -----IDIFDDDYLAKLEMIKQPNTKLQLLQQMLAKAIGEFKKTNKVKGVDFTKKMNMLV 918 Query: 1059 KAWKETRNEDIAA---------RLIGHIRR-----AAVGDALKPFEER-VDHALTRIKGE 1103 + + E +D+ +I A+ G+ FEE+ L + + Sbjct: 919 EKYNERDEKDVLRSEVINDFSDEIINLYNELRAEMASFGEMGINFEEKAFYDILISLAHK 978 Query: 1104 NDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQRTFDDNLDTLLGKF 1161 D++ + L+ + K V+D + + ++ +L LL ++ Sbjct: 979 YDFTYPEDKLLELSKEV---KKVID----DKAKYTDWNKRDDIKAELHFDLIILLDEW 1029 >UniRef50_B3R3C4 Type I restriction-modification deoxyribonuclease, R subunit n=16 Tax=Bacteria RepID=B3R3C4_CUPTR Length = 1041 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 141/911 (15%), Positives = 250/911 (27%), Gaps = 112/911 (12%) Query: 167 EVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYH 226 + + + Q A + LA++ + Sbjct: 24 LYAEGDTAHYDRASALYLPDLLAWIEATQLDAWQRLSKTHGPALKERLAERVRKSLNERG 83 Query: 227 KEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPT 286 + L L E + L + + N+ Sbjct: 84 TLDVLRRGVEMLGLKEALTVAQFRPALA------------INPVIQQHYAANRLRVVRQV 131 Query: 287 GKDETGNQGFADYVLFVGLKPIAVVEAKRNNID-VPARLNESYRYSKCFDNGFLRETLLE 345 Q D VLF+ +A E K + V +++ G + E LL Sbjct: 132 RHSPNNPQDALDLVLFLNGIAVATAELKSDFTQGVLDAVDQYRFDRHPQPKGGMAEPLLS 191 Query: 346 HYSPDEVHEAVPEYETSWQD-TSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTR 404 VH AV + E +G +PF G + A D T Sbjct: 192 FPGGALVHFAVSQAEVMMTTRLAGAGTNFLPFNRGNQGGKGNAPNP--------DGFATA 243 Query: 405 NMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKA-IVKG 463 + + + R + L++L + S + RY+Q DA R + + +G Sbjct: 244 YLWEEVW---RRDSWLDILHRYLINKRD--NQKQPKSVIFPRYHQLDATRRIVADVLAQG 298 Query: 464 -QQEILLAMATGTGKTRTAIAMMFRLIQSQR------FKRILFLVDRRSLGEQALGAFED 516 L+ + G+GKT + L F +L + DR L Q A D Sbjct: 299 PGGRYLIQHSAGSGKTNSIAWTAHFLADLHDASHRKLFDSVLVVSDRTVLDAQLQEAIFD 358 Query: 517 TRINGDTFNSIFDIKGLT----DKFPEDSTKIHVATVQSLVKRTLQSDE-PMPVARYDCI 571 SI G + +D KI V T+Q+ E + + Sbjct: 359 FGRTTGVVESITSESGSKSAQLGQALKDGKKIIVCTIQTFPFALQAVQELAATEGKRFAV 418 Query: 572 VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDH----------------FDAVKI 615 + DEAH + +L + + I + Sbjct: 419 IADEAHSSQTGESAAKLKQLLSAEEWVALQDGGEIDTEGLLAVQMEARSGGKGGNGLTYV 478 Query: 616 ALTATPALHTVQIFGEP--------VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYL 667 A TATP T+++FG P + Y+ R A+ +GF++D + Sbjct: 479 AFTATPKQKTLELFGRPGPDGLPQPFHSYSMRQAIEEGFILDVLKNYTTYKLAFKLAHDG 538 Query: 668 SKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDP--TGSQ 725 + ++ E + +A + V + P G Sbjct: 539 QEYDEKEVERSTAMKGIMQWVRLHPYNIAQ---------KVQVVVEHYRENVQPLLDGKA 589 Query: 726 KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAI--------------IKITGDADKDA 771 K +V + A + +RA ++ L + Sbjct: 590 KAMVVVGSRKEAVRWQKAIRAYIERMNYPLGVLVAFSGEVEDPESFAEPVSEHSKDLNPG 649 Query: 772 RKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 K + + F ++++ + TG D P +C + + + I Q R R Sbjct: 650 LKGKDIREAFADPGY-HLLLVANKFQTGFDQPLLCGMYVDK-MLGGIQAVQTLSRLNRAY 707 Query: 832 PEVNKTSFKIFDCVD----IYSTLESVDTMRPVVVRPKVELQ-TLVNEITDSETYKITEA 886 P K + I D V+ I ++ + L L ++ + Y E Sbjct: 708 P--GKDTTYILDFVNDAQEILKAFKTYYATAELEATTDPHLVYDLRAKLDAAGHYDDFEV 765 Query: 887 DGRSFAEHSHEQLVAKLQRIIGLATFNRDR------SETIDKQVRRLDELCQDA------ 934 E + A+L I R + ID Q R D+ + A Sbjct: 766 ARVVKVEMDPKGTQAQLSTAIAPVADRLLRRYKTAQQDRIDAQSRHDDKAAEAARETMET 825 Query: 935 --AGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVV 992 N G SRL + ++L ++ + + Sbjct: 826 LVLFRNDMGAYSRLYAFLSQIFDYGNTDIEKRFLFYKRLIPLLDFGRERDTVDLSKVVLT 885 Query: 993 SVKSLYGDYDT 1003 K + T Sbjct: 886 HHKLRHTGQQT 896 >UniRef50_C3X5U1 Type I site-specific deoxyribonuclease n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X5U1_OXAFO Length = 978 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 125/925 (13%), Positives = 274/925 (29%), Gaps = 170/925 (18%) Query: 261 DSKTLRFSKGARPE-PGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNID 319 D + R + E N+ E + D + + P+ +E KR + + Sbjct: 66 DDGSTREIRFLNQEAWCKNEFQVANQITM-EGEYENRYDVTILINGLPLVQIELKRKDTE 124 Query: 320 VPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYS 379 + ++ RY + + + ++ ET + + Q F F + Sbjct: 125 LKVAFDQINRYR-----YHSYDAGIGLFQYVQIFIISNGNETKYFANNPGQSF--DFTFY 177 Query: 380 TNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADN-- 437 + + + ++ + + RP +++M+ ++ ++ Sbjct: 178 WSDE---------------NNKRITSLQEFTDTFLRPCHIVKMIAKYIILAQEYKEESEV 222 Query: 438 ------------------PGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTR 479 + LR YQ AV A+ + + TG+GKT Sbjct: 223 GLKRKKGKTAAQAIKREVTKRYLVILRPYQYYAVEAIVNKVKNCNDNGYIWHTTGSGKTL 282 Query: 480 TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE 539 T+ + + +++LF+VDR+ L Q AF + + + K L + + Sbjct: 283 TSFKASQIIDTLENVEKVLFVVDRKDLDNQTAEAFNQY--QEGSVDGTSNTKALIKQLAD 340 Query: 540 D-----STKIHVATVQSLVKRTLQSDEPMPVARYD----CIVVDEAHRGYILDKEQTEGE 590 STK+ V T+Q L +Q + + DE HR + Q + Sbjct: 341 SAIDKSSTKLIVTTIQKLNNAVMQPKFSKQIEHLKNKKVVFIFDECHRSQFGETHQNIKK 400 Query: 591 LQFRSQLDYVSAYRRILDHFDAVKIALTATP----------------------------A 622 A T TP Sbjct: 401 FFN-----------------KAQMFGFTGTPIFADNASSGMGIQKALKEGTLLTDGTEIK 443 Query: 623 LHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEV 682 T +FGE ++RY A+ DG ++ I + Q G + QVE I + Sbjct: 444 KTTKALFGECLHRYIITDAIRDGNVLPFSVEY--IGQYKQNGTGTTLDIQVEDIDTEELF 501 Query: 683 I-NDTLEDDQDFEVADFNRGLVIPAFNRAV----CNELTNYLDPTGSQKT---------L 728 D L + +++ + F L Y D ++ Sbjct: 502 ESEDRLRKITRYILSNHDAKTKQRQFTAMFCVSGVKTLIKYYDLFKEEQAKLGTDLTIAT 561 Query: 729 VF--CVTNAH-------------------ADMVVEELRAAFKKKYPQLEHDAIIKITGDA 767 +F + + R ++ T Sbjct: 562 IFSYAPNEEDPNAHGFDIGAIPDEELEVDSKKMSPFSRDRLEEFIGDYNARFGTSYTTKD 621 Query: 768 DKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRA 827 I+ + +I++ V++ TG D + + + ++ L Q R Sbjct: 622 SDSFYNYYKNISDRTRNGEIDILLVVNMFLTGFDSKRLNTLYVDKNLKYHGL-IQAYSRT 680 Query: 828 TRLCPEVNKTSFKIFDCVDIYSTLESV-------DTMRPVVVRPKVELQTLVNEITDSET 880 R+ ++K+ +I ++ + D V++ P NE Sbjct: 681 NRIIN-IHKSHGQIVCFRNLKKQTDDAIALFASKDAKEVVLLEPYGHYVKKFNEGVTRLL 739 Query: 881 YKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFN 940 + + + E+ + V + + ++ L + + + + ++ + G N Sbjct: 740 EIVPDVNVVLEDENEQLEFVKRFRELLRLYNILKSFCDFQENDLLLTEQQMAEYMGKVRN 799 Query: 941 GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGD 1000 S ++ G + + F+ + + +++ + ++ + Sbjct: 800 LQYSISKQTG-KQKVSILKDVDFFLDVMHSDEINVSYI---------------LRKCFEL 843 Query: 1001 YDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKA 1060 TP+D ++ +Q N P+L + + L ++ S+ Sbjct: 844 KKTPEDKIDKKRKEIQNLLNTSPSLHSKRELIEKFIEENLPKIS--------SGDSIEAL 895 Query: 1061 WKETRNEDIAARLIGHIRRAAVGDA 1085 + + RN++ AA L + Sbjct: 896 FADFRNKEAAAALRKLCEEEKLAQE 920 >UniRef50_A8ZS37 Type I site-specific deoxyribonuclease, HsdR family n=4 Tax=Proteobacteria RepID=A8ZS37_DESOH Length = 1038 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 129/904 (14%), Positives = 267/904 (29%), Gaps = 123/904 (13%) Query: 262 SKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVP 321 + + PE E + G + D VL++ I V+E KR++++V Sbjct: 107 HEDVHLIDWEHPENNDFALAEEVTL---KGGYERRPDLVLYINGMAIGVIELKRSSVEVA 163 Query: 322 ARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTN 381 + + + N + V Y T Sbjct: 164 DGVRQLITNQEKIFNEG------FFSTVQLVFAGSDSQGLR---------------YGTT 202 Query: 382 GREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMS 441 G + ++ K + + K L + + LL+++ + Sbjct: 203 GTPEQFFVQWKDEEGDSALAPGTLLDKPLAQMCNKKRLLDLIRNCIIFD--------AGQ 254 Query: 442 ELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLV 501 + R +Q +A ++ I + ++ ++ G+GK+ + + L++ RIL + Sbjct: 255 KKVPRPHQYFGFKAAQERIRR-REGGVIWHTQGSGKSILMVLIAKWLMEHDPDARILVIT 313 Query: 502 DRRSLGEQALGAFEDTRI--NGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS 559 DR L +Q + + + I +K + ++ A + L+ Sbjct: 314 DRDELDKQIVDVMRNAGVVGEDAPSPRITSRAQFVEKIGATTPRLLCALIHKFETTDLKG 373 Query: 560 DEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTA 619 + P R+ I VDE HR D + DA+ I T Sbjct: 374 NPPPIHGRF-YIFVDECHRTQGGDMNRQMKRWMQ-----------------DAIFIGFTG 415 Query: 620 TP-----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVE 674 TP L T +FG ++ Y + V D ++D + + + + Sbjct: 416 TPLLRRDKLMTRDVFGTYIHTYKFHQGVADKVILDLKYEARNVPQRLTSQKAIDA----- 470 Query: 675 RISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD-----PTGSQKTLV 729 + + +N+ + A + + + + ++ ++ Sbjct: 471 WFEQKTKNLNNFQKAIVRKTWATMEKLMSAGERKQRIIADIIQDFSLKPRLNNDRGTAIL 530 Query: 730 FCVTNAHADMVVEELRAAFKKKY------PQLEHDAIIKITGDADK-------------- 769 + A + Y + +AI K ++++ Sbjct: 531 VTASIYDACHYFRLFQNTGFGAYCGIITSYEPNANAISKEPANSNERYKFDTYKQCVLDA 590 Query: 770 ---DARKVQTMITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 + RF + +++ V L TG D PS I ++ L+ Q Sbjct: 591 FTTTEKYEAETRRRFIEEPANCKLLIVVSKLLTGFDAPSCTYIYLDNEMHDHTLF-QAIC 649 Query: 826 RATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITE 885 R RL +K I D +++ ++ + + + + Sbjct: 650 RTNRL-DGDDKEYGHIVDFKELFGDVQQAIAVY---------------NSDELDIDEGGG 693 Query: 886 ADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASR 945 + + ++ KL + + + L C +A N Sbjct: 694 GENNIHLKDWLKEGKKKLDDTREALKYLCAPVPEPREMEQYLFYFCGNADNPNALTDTEA 753 Query: 946 LREKGPHWSAEVFNKLPGFIARLEK---LKTDINNLNDAPIFLDIDDEVVSVKSLYGDYD 1002 LR A L + +I LN+ F + S Sbjct: 754 LRVSFYKSVATFVRAFAAVSQYLAEAGYSAAEIATLNNEVKFFSDTRAAIKKHSGEELDI 813 Query: 1003 TPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWK 1062 P + L+ A PA + ++ R LVEL L + K Sbjct: 814 KP--YEADMRHLLNTYIQADPA-----DPLGEMDRYSLVELIIKTGIHDAIAKKLNEKGK 866 Query: 1063 ETRNEDIAARLIGHIRRAAVGDALKP---FEERVDHALTRIKGENDWSSEQLSWLDRLAQ 1119 ++ +A +I +IR+ + + L +EE IK D + +L + Sbjct: 867 LSKTA-VAEGIIHNIRKTIIREQLADPRFYEEMSKLLDDLIKQRQDDTKSYEEFLKQAEA 925 Query: 1120 ALKE 1123 +K+ Sbjct: 926 LVKK 929 >UniRef50_A8TCZ2 Type III restriction protein res subunit n=3 Tax=cellular organisms RepID=A8TCZ2_METVO Length = 997 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 148/1020 (14%), Positives = 290/1020 (28%), Gaps = 127/1020 (12%) Query: 184 ILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSE- 242 + K+++ + + L + N K +++ + L+E Sbjct: 7 DDDLKERKFQTIIKEYLTNENNYVESFNKNYDKHYAIDKECLFNFLELTQKNELKELNEI 66 Query: 243 --EESRFLI----DAQLR-------------KAGWQADSKTLRFSKGARPEPGVNKAIAE 283 + R I D QLR G + + + + Sbjct: 67 YGDNYRSKIIENLDKQLRIMGIIHILKHGYKDMGVKLKLAYFKPANNLNADQNKLYGQNI 126 Query: 284 WPTGKD-ETGNQGFADYVLFVGLKPIAVVEAKRN--NIDVPARLNESYRYSKCFDNGFLR 340 ++ D V+F+ PI +E K + + + F Sbjct: 127 VSVTEELNYTQDKRIDLVIFLNGMPITTIEVKNPYTGQTYKNAIKQYKK------TRFNT 180 Query: 341 ETLLEHYSPDEVHEAVPEYETSWQD-TSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRD 399 E L + ++ A+ E + G+ +PF + K +Y Sbjct: 181 EKLFKFKERAIINFAMDEDQVYMTTQLKGEDTIFLPFNLGVGDGAGNPNVTGKLKTYYMW 240 Query: 400 VRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQ---------WFADNPGMSELGLRYYQE 450 + LLE++G Q Q + + RY+Q Sbjct: 241 -----------ENILTKDSLLEIIGKFVYVQKQEHEVLDDNGDYKIITTEKTIFPRYHQL 289 Query: 451 DAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLIQ-SQRFKRILF-----LVD 502 D R + +++ Q+ L+ + G+GKT + + RL + +++F + D Sbjct: 290 DCTRDILNHVIQNGSGQKYLIQHSAGSGKTNSITWLSHRLSSLHDKNDKVIFDGVIVVTD 349 Query: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 R+ L +Q + I K E TKI ++T+Q + + Sbjct: 350 RKVLDKQLQDSIYQLEHKTGVVAKIDKDSNQLAKEIEKGTKIIISTIQKFPHVLKKLADT 409 Query: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQF------------RSQLDYVSAYRRILDHF 610 IV+DEAH E ++D + L +F Sbjct: 410 KGKKY--AIVIDEAHSSTSGKNMMALKESLSLDEAIKIAEEEESQEIDSEDKINKELKNF 467 Query: 611 ----DAVKIALTATPALHTVQIFGE-----------PVYRYTYRTAVIDGFLIDQDPPIQ 655 + A TATP T+++FG P + Y+ R A+ +GF++D Sbjct: 468 TDQSNVSFFAYTATPKATTLRLFGTKSDDDNDDKYYPFHIYSMRQAIEEGFILDVLKNYM 527 Query: 656 IITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNEL 715 + + + + ++ ++ + + Sbjct: 528 TYKMCYKVSKTIEEDPEFDKARATKSIMRYVTLHPCNISQK-----------TEIIIEHF 576 Query: 716 TNY--LDPTGSQKTLVFCVTNAHADMVVEELRAAFKKK-YPQLEHDAIIKITGDADKDAR 772 NY G K ++ + HA E K+K Y L+ T Sbjct: 577 RNYTMKKIGGHAKAMLITPSRLHAVRYKLEFDKYIKEKGYDDLKTLVAFSGTVKDTNSLE 636 Query: 773 KVQTMITRFNKERLP--------NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMK 824 ++ + ++ LP I++ + TG D P + + +K+ + Q Sbjct: 637 YTESGMNEISQANLPVEFDKEESKILIVANKYQTGFDQPKLHTMYIDKKLFG-VKAVQTL 695 Query: 825 GRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKI- 883 R R+ P K I D V+ ++ P + TL N+I ++ Y + Sbjct: 696 SRLNRIYP--GKEDTFILDFVNEPEDIQRA-------FMPFYSMTTLNNDIDPNDIYTLE 746 Query: 884 TEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFA 943 E + + L L R + E + F A Sbjct: 747 NEIYAKQVINEEDVKKFTDLFYKDNLTNRGRALESNYINNSLKRIEKFTTEETIEFKNLA 806 Query: 944 SRLREKGPHWSAEVFNKLPGFIARLEKL-----KTDINNLNDAPIFLDIDDEVVSVKSLY 998 + K L K +I N + + E S+K Sbjct: 807 KKFINLYNLIIQIFALKDSDIHRLNIYLRYLLKKIEIENTGGVDLTNKVILEYYSLKKGK 866 Query: 999 GDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVEL--QEWFDRQHFEESS 1056 D + D + + N + L K E E + + Sbjct: 867 LDEIELRSSDGGIDIHISEGGTKGENPDLLSNIIKTLNDKFGTEFSDSEKLAVEQISNNL 926 Query: 1057 LRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDR 1116 + L + + + + + +I +ND+ ++ + L Sbjct: 927 KSNEKLKLNATANDYELFRLAFDKSFEEGVVNEFSKNEIFYGKILKDNDFKNKLIDLLAM 986 >UniRef50_C0CKP4 Putative uncharacterized protein n=2 Tax=Bacteria RepID=C0CKP4_9FIRM Length = 1046 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 153/1056 (14%), Positives = 311/1056 (29%), Gaps = 197/1056 (18%) Query: 169 EAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKE 228 E+ + L+ A+ + + Q LE + Q +E+ ++ Sbjct: 45 ESYHEILLLRYFREALKKLNPWMNDNQISEAQKVLE---NRLSTSSLLQVNEEKYFLIRD 101 Query: 229 ITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGK 288 +K+ +E + +ID Q P+ A+ E Sbjct: 102 GISVTVKKPNGQTETKKAAVIDFQ-------------------NPDNNYFLAVKELKIHG 142 Query: 289 DETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESY-RYSKCFDNGFLRETLLEHY 347 D + D V FV P+ VE K+N +DV +++Y Y + F Sbjct: 143 D--LYRRRTDIVGFVNGIPLLFVELKKNTVDVQNAYDDNYTDYQDTIPHLFYYNA----- 195 Query: 348 SPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRN-- 405 F +NG E + ++ + + Sbjct: 196 ----------------------------FLMLSNGTEAKVGTLGSKYEFFHEWKRLAEED 227 Query: 406 -----MSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQE----DAVRAV 456 + L + E L++ + + +++ R +Q +A++A Sbjct: 228 QGSVALETMLRGICKKENFLDLFENFILFDHS----GGRTAKILARNHQYLGVNEAMKAY 283 Query: 457 EKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRF-KRILFLVDRRSLGEQALGAFE 515 + + + G+GK+ + + ++ + + L DR L Q FE Sbjct: 284 AARKLNDGKLGVFWHTQGSGKSYSMVFFAQKIRRKFEGSPTFVILTDREELNSQISDTFE 343 Query: 516 DTRINGDTFNS---IFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIV 572 + + G +S + L K + +Q K + EP+ I+ Sbjct: 344 NCGLLGKNKSSQFIAASGEDLVQKLK-GNPSFIFTLIQKFNKP---NLEPIYPDHDIIIM 399 Query: 573 VDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH----TVQI 628 DEAHR + ++L A +I T TP L T + Sbjct: 400 SDEAHRSQYG---------------IFADNMMKLLP--TAARIGFTGTPLLSSDNITART 442 Query: 629 FGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLE 688 FG V Y ++ AV DG + + E + ++ D Sbjct: 443 FGGYVSVYDFKRAVEDGATVPLYYENR------GEKILNLHNPEITEQILDAIENADLDV 496 Query: 689 DDQDFEVADFNRGL---VIPAFNRAVCNELTNYL-DPTGSQKTLVFCVTNAHADMVVEEL 744 D QD A+F + + +++ + N+ D S K + C+ + + Sbjct: 497 DQQDKLEAEFAKEIHLLTAEPRLKSIARDFVNHYSDLWTSGKAMFVCLNKVTCVRMYNYV 556 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDAR-------------------------------- 772 + +K++ QL+ +A + R Sbjct: 557 QEYWKEEIKQLKAKIKTVTQQEAQELERKLKWMQETEMAVVISQEQNEIQTFKKWNLDIK 616 Query: 773 ------KVQTMITRFNKERLP-NIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKG 825 + + + F + P +V + TG D+ + + + +++ L Q Sbjct: 617 YHRAKMEKRELDKEFKDSKNPLRVVFVCAMWLTGFDVKCLSCLYLDKPLKAHTLM-QTIA 675 Query: 826 RATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVV------VRPKVELQTLVNEITDSE 879 RA R+ K++ I D + I L V P V+ + L+N I ++ Sbjct: 676 RANRVSE--GKSNGLIVDYIGIVKALRKALADYTANVSGNGGVDPTVDKEKLINRIIETI 733 Query: 880 TY-----KITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDA 934 + D + + Q ++ LQ + +T L+ L + Sbjct: 734 GKAKLFLAENDFDLQMLIDAYDFQKLSYLQEAANAVCGTIEDKKTFTTYASELNRLMKYT 793 Query: 935 AGVNFNGFASRLREKGPHWSAEVFNKLP--GFIARLEKLKTDINNL-----------NDA 981 + G+ + E AE+ K L ++ I++ ++ Sbjct: 794 DRSDITGYTRKEYEAIAAIYAELQKKRKHINTTELLVEINAIISSYVEIQHMPSMVREES 853 Query: 982 PIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNA----QPALQAVINRPRDLTR 1037 F + ++ + L+ + ++Q+ + P R + + Sbjct: 854 RRFDISAIDFDLLRREFAKVKKKNLVLKDLEEVIQQKLDRMMFCNPDRINYYERYQQIID 913 Query: 1038 KGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHAL 1097 E + F L + E+ ++R D Sbjct: 914 DYNSEQDRATIEKTF--MDLMDLANQMNQEE-----QRYVREGFFSDEELS--------F 958 Query: 1098 TRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFK 1133 + D S + L +A L K+ F Sbjct: 959 YDMLFREDLSKSDIKKLKEVATDLLHKIKGKISEFD 994 >UniRef50_Q1CR89 Type I restriction enzyme R protein n=10 Tax=Helicobacter pylori RepID=Q1CR89_HELPH Length = 992 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 145/1019 (14%), Positives = 321/1019 (31%), Gaps = 127/1019 (12%) Query: 161 KAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQ 220 +T+ EV+ Q + GY + + + + E + L A + + N E + E Sbjct: 1 MMKTEKEVQKQVIETFKAMGYAYLGDLTKSDNENINRESLKAWLIKNQKINDERWHKIEH 60 Query: 221 ERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKA 280 E K +A ++ L LI K +++T Sbjct: 61 EIHNALKNDLYEANQKFYEL-------LIYGVKTKISQNENTQTTWLIDWKDVSKNEFSV 113 Query: 281 IAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLR 340 E D VL+V + V+E K++++ V + + + DN + Sbjct: 114 AEEVSVKGPNA---KRPDVVLYVNGIALGVLELKKSSVSVESAIRQ------NLDNQKKK 164 Query: 341 ETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDV 400 + V + ++++ + +++ Sbjct: 165 FIRDFFKTIQLVMAGNESQGLKYGVIETEEKYYLS---------------------WKEE 203 Query: 401 RDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAI 460 +N+ + + + + E LE + + R++Q A++ ++ I Sbjct: 204 GVLKNLFETIERFLKKERFLEFIHDFLIFD--------KGKKKCARFHQYFAIKKTQEFI 255 Query: 461 VKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRIN 520 + ++ ++ G+GK+ T + + L ++++ R+L + DRR L Q G FE Sbjct: 256 QR-KEGGIIWHTQGSGKSLTMVWLTQWLRRNRKQARVLIVTDRRELDAQIQGVFEGIG-- 312 Query: 521 GDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGY 580 + K L E+ + + V L+ + PV + ++VDE HR Sbjct: 313 -EDLYRADSKKDLLSVLFENKEFLVGSLVHKFDDNDLEDLKKQPVLKEWIVLVDECHRTQ 371 Query: 581 ILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP-----ALHTVQIFGEPVYR 635 L +A+ IA + TP + ++FG+ ++ Sbjct: 372 GAKLHNAMKSLLP-----------------NAIFIAFSGTPLLKQDKKTSQEVFGDYIHC 414 Query: 636 YTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEV 695 Y + AV D ++D + + + S + E + + +ND + + + Sbjct: 415 YKFNEAVSDKVVLDLSYEARSVEQYVS-----SPEKLDEYFELKTQNLNDAAKTELKKKW 469 Query: 696 ADFNRGLVIPAFNRAVCNELTNYLDPTGSQK-----TLVFCVTNAHADMVVEELRAAFKK 750 + + + ++ + K ++ + +A E K Sbjct: 470 VNLQKVFSTKDRLARIVQDIVLDMAKLPRLKNGKGNAMLVAESVYNACRYFELFLETELK 529 Query: 751 KYPQLEHDAIIKITGDAD-------------------------KDARKVQTMITRFNKE- 784 + I D KD +K I F +E Sbjct: 530 DKVAVITSYEPNIADLKDCGSDESEESYKYRTYCTMLQNFFNEKDEKKALNKIKEFEEEV 589 Query: 785 --------RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNK 836 +++ VD L TG D+PS+ + +K++ L+ Q R RL +K Sbjct: 590 KKRFINEPDRMKLLIVVDKLLTGFDVPSLTYLYMDKKMQDHGLF-QAVCRVNRL-DSEDK 647 Query: 837 TSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSH 896 I D D++ +L+ + E + + I+D + + S Sbjct: 648 DFGCIIDYSDLFDSLQEAHSDYTNGAFENYEREDIQGLISDKAQKIKKKLEEVREQLRSL 707 Query: 897 EQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAE 956 + V + + + + + Q RRL A F + + + Sbjct: 708 GESVKEPKDEMDYIAYFCGSDLEKNAQKRRLFYQLVGAFLRMFVELNNLEKPIYSKEETQ 767 Query: 957 VFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQ 1016 + F L+K + + D+ +E+ + Y + ++ D + Sbjct: 768 QIKQEAEFYRHLQKAVSL--SSGDSVDLKSYSEEMRRILDAYIKTTDSETLIKIEDQGLC 825 Query: 1017 R--SPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLI 1074 + +++ + ++ E+ + + E + + LI Sbjct: 826 EVLAQMDIDDFNKALSQAFKNESSMAESIANNTKKRIIEKEASDPKYYE-KLSSLLNDLI 884 Query: 1075 GHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQL---SWLDRLAQALKEKVVLDDD 1130 R + + +++ ++ + D + + L L L E L D Sbjct: 885 LQFREKKL--TYLEYLQQIHDLAKKVIDKEDKNYPKKINTKALKTLYDNLDENEALALD 941 >UniRef50_UPI000038E017 HsdR family type I site-specific deoxyribonuclease n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E017 Length = 994 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 141/955 (14%), Positives = 284/955 (29%), Gaps = 115/955 (12%) Query: 160 EKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTE 219 ++A ++ + + Q+L LE + + L +L + ++ ++ Sbjct: 4 DEASSEKWIIEKLQELGWTYNTPEELEDMEDNKYFLRETLLNSLRKMNSIPDSLISDAVS 63 Query: 220 QERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNK 279 + + + + L +ID + T+R + Sbjct: 64 KLEELTPSKDGNSKFLNFLKNG----INVIDEHRQ-------IHTVRLIAQSNKYNNSFI 112 Query: 280 AIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNI--DVPARLNESYRYSKCFDNG 337 + + D +LFV P+ ++E K + N+ Y + + Sbjct: 113 VTNQLSIH---GKSNKRPDILLFVNGIPVVIMENKNPYNAGSIDEAYNQIKGYEESIEGL 169 Query: 338 FLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWY 397 F + +G P ++ G++ RA KT + Sbjct: 170 FTYLQIAVI-------------------NNGINGELFPLFFNEKGKDTRAKWKTS---YP 207 Query: 398 RDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVE 457 + + L + +++L + + + ++ RY Q A + Sbjct: 208 MESKQGSEFETLLNGVFNIDNFVKLLLNYTHIRKK----GDRNEKILARYMQFRATEKIL 263 Query: 458 KAIVKGQQE--------ILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQ 509 I + L+ G+GKT ++L ++ IL +VDR+ L Q Sbjct: 264 NRIHNNMDKNLKEPKKTGLIWHWQGSGKTLIMAYTAYQLRKTLPDATILIVVDRKDLDNQ 323 Query: 510 ALGAFEDTRINGDTFNSIFDIKGLTDKFPEDST----KIHVATVQSLVKRTLQSDEPMPV 565 AL +F D + + I + L D ++ I + T+Q +S Sbjct: 324 ALSSFSDIQ-GLELTKDIKNTTELGDLIAYNNGNAMPGIFIVTIQKFSPENFKSIVKDST 382 Query: 566 ARYDCI-VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATP--- 621 + I +VDE+HR +R DA T TP Sbjct: 383 LNNNVICLVDESHRTQYG---------------LMAGTFRNAFP--DAFVFGFTGTPIRK 425 Query: 622 -----ALHTVQIF----GEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQ 672 +T + F + RYT + A DGF + ++ + E Sbjct: 426 KSGGNIRNTFEEFCPPGEVYLDRYTMKDAQEDGFTVPIAYEYNAAIPAVKDHIINEALEL 485 Query: 673 VERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ-KTLVFC 731 E E D L + + R V N N ++ T S K ++ Sbjct: 486 DEEAEGLTENEKDLLNRKIRVIKELYKTDANVDTIARDVANHFKNEVENTNSGLKAMLVA 545 Query: 732 VTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV-------------QTMI 778 V M +L + ++ + D + R + Sbjct: 546 VDREACVMYKRKLDKLLAPETSEIVMTFGHNESSDIISEYRDELQKRTGKDAKQACKEFT 605 Query: 779 TRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTS 838 FN P I++ D+L TG D P + + + + L Q GR R P +K Sbjct: 606 ESFNISGNPKILIVTDMLLTGFDSPKLWVMYLAKPLFEERLL-QAIGRTDR--PFRDKDY 662 Query: 839 FKIFDCVDIYSTL-ESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHE 897 + D V + TL ++++ +P ++ + E + + K+ + F Sbjct: 663 GYVIDYVYLLGTLNKTLNKYEGGPSKPGIQGIVISREEIEKDFIKLLDETYAIFGNFDFS 722 Query: 898 QLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEV 957 + N + S+ +K R+L + + + Sbjct: 723 DNSHDNLNKLIKILSNPEISDRFEKNFRKLTAMLNLPRAKAYLTLHIDKYRQLAKAYGIY 782 Query: 958 FNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQR 1017 N L EK++ + I + G++ +D+L + Sbjct: 783 VNNLKLGAVNGEKVQEAYE-----RVKKIISENFFLDVENRGNFTIDRDYLNTLGKT-RD 836 Query: 1018 SPNAQPALQAVINRPRDLTR------KGLVELQEWFDRQHFEESSLRKAWKETRN 1066 +A AL + +V+ + + + K ++ Sbjct: 837 YGSALRALNTWHTEISNRRFGYPGLLDRIVDAYQKLLNAKAVNDEILQQIKSIKD 891 >UniRef50_D1BQJ4 Type I site-specific deoxyribonuclease, HsdR family n=2 Tax=Bacteria RepID=D1BQJ4_VEIPT Length = 1054 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 140/1007 (13%), Positives = 290/1007 (28%), Gaps = 180/1007 (17%) Query: 193 EAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQ 252 Q + A+ + Q +E+ Y ++ +KR +E + +ID Sbjct: 66 WINDQQIVEAITRLTRRISTASLIQINEEKYNYLRDGIPVTVKRPDGRTEIKKAAIID-- 123 Query: 253 LRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVE 312 A+ E D AD V FV P+ +E Sbjct: 124 -----------------FNNAYNNEFLAVKELIVNGD--LYNRRADIVGFVNGIPLLFIE 164 Query: 313 AKRNNIDVPARLNE-SYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQR 371 KR +IDV + Y F Sbjct: 165 LKRPDIDVRNAYEDNYKDYLDTIPQLFYYNA----------------------------- 195 Query: 372 FKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRN-------MSKALPEWHRPEELLEMLG 424 F +NG E + ++ + + L E L++L Sbjct: 196 ----FVMLSNGLEAKVGTVGSKYEFFHEWKRLDEDEKGSVAFETMLLGICNKENFLDLLE 251 Query: 425 SEPQKQNQWFADNPGMSELGLRYYQE----DAVRAVEKAIVKGQQEILLAMATGTGKTRT 480 + + N +++ R +Q AV A +K + + G+GK+ + Sbjct: 252 NFILYDHS----NGRTAKILARNHQYLGVNKAVEAYADRKLKDGKLGVFWHTQGSGKSYS 307 Query: 481 AIAMMFRLIQS-QRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNS----IFDIKGLTD 535 ++ + + L DR L Q FE+ I G + + L Sbjct: 308 MAFFAQKIRRKMAGSPTFVVLTDREELNTQISDTFENCGILGKDSKAKQCIATSGEDLIA 367 Query: 536 KFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS 595 K + + K + EP+ I+ DEAHR Sbjct: 368 KLK-GNPSFIFTLIHKFNKSDV---EPIYPDHDIIIMSDEAHRSQYG------------- 410 Query: 596 QLDYVSAYRRILDHFDAVKIALTATPALH----TVQIFGEPVYRYTYRTAVIDGFLIDQD 651 Y ++L A +I T TP L T + FG + Y ++ AV DG + Sbjct: 411 --LYADNMMKLLP--TAARIGFTGTPLLSYDNITERTFGGYISVYDFKRAVEDGATVPLY 466 Query: 652 PPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVI---PAFN 708 + + + ++ D Q+ +F + + I Sbjct: 467 YENRGAKLDDLQN------PEITNEILDAIEAADLDSAQQEKLEKEFEKSIHILTAEPRL 520 Query: 709 RAVCNELTNYLDP-TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDA 767 R++ + + S K + C+ + + ++ +K++ +L+ + +A Sbjct: 521 RSIAKDFVRHYSDVWTSGKAMFVCLNKVTCVRMYDYVQEYWKEEIKRLKKQIKVATQQEA 580 Query: 768 DKDARKVQ--------------------------------------TMITRFNKERLP-N 788 + RK++ + F P Sbjct: 581 QELERKLKWMEETDMAVVISQEQNEIQTFKAWGLDIETHRRKMVKRDLDKEFKDSENPLR 640 Query: 789 IVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIY 848 IV + TG D+ + + + +++ L Q RA R+ K++ I D + I Sbjct: 641 IVFVCAMWLTGFDVKCLSCLYLDKPLKAHTLM-QTIARANRV--NEGKSNGLIIDYIGIV 697 Query: 849 STLESVDTMRPVV------VRPKVELQTLVNEITDS-ETYKITEADGRSFAEHSHEQLVA 901 L+ V P ++ + L+ I + + + E + Sbjct: 698 KALKKALAEYTANVGNHDGVDPTIDKEKLIARILELIDILVAFFKQKNIYIEDFSDAQTN 757 Query: 902 KLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGP-HWSAEVFNK 960 R+ L +T+ D+ A + + + V+ Sbjct: 758 AFSRLSNLNEAANAVCDTV------ADKQTFTACASELHKLMKYIERDDISVDTRRVYET 811 Query: 961 LPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDTP--QDFLEAFD------ 1012 + L+ + D++ + I E + +K G + +++ D Sbjct: 812 IAAIHRMLKPRRRDVDTTDLMVTINAIISEHIGMKEFLGQTEDAIGSEYITRIDISAINF 871 Query: 1013 SLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAAR 1072 +++++ + D + L L + R+ ++ + + Sbjct: 872 NILRKEFTRVKHKNLLFKDLGDFIEQSLDRLVAANPNRRDYYERYRQIIEDYNSGKDRSN 931 Query: 1073 LIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQ 1119 + +AL + + +R E + ++L+ D L + Sbjct: 932 I------EKTFEALIQLVKELTEEESRYIREGFTTDDELAIFDLLKK 972 >UniRef50_A8UNU3 DEAD/DEAH box helicase-like protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UNU3_9FLAO Length = 1000 Score = 345 bits (886), Expect = 4e-93, Method: Composition-based stats. Identities = 131/986 (13%), Positives = 302/986 (30%), Gaps = 132/986 (13%) Query: 204 EAQLAEKNAELAKQTEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRK--AGWQAD 261 E L + E + + K YHK++ Q I + LN + + + +I+ + G+ Sbjct: 42 EDLLFQFLEETQTKALDKLKRYHKDLYKQKIVKRLN-DQTKQKGVIEVLRKGIVDGFTDT 100 Query: 262 SKTLRFSK-------GARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAK 314 L + K A N A N+ D V F+ PI E K Sbjct: 101 KLRLFYDKPVSAYNQKANDLYQANIFSAMRQV-YFSPKNKKSLDIVTFINGLPIISFELK 159 Query: 315 RN--NIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRF 372 +V + + + F L+ E + G+ F Sbjct: 160 NELTKQNVNHAIKQYKTDRDPNEEIFRFGRLVV------NFAVDSEEVWMCTELKGQSSF 213 Query: 373 KIPFCY-STNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQN 431 +PF NG ++ +++V +++ + + +++ E + + Sbjct: 214 FLPFNKGYKNGAGNPPKEGIRTDYLWKEVLTKDSLTNIIQNY------SQIITEEKEYLD 267 Query: 432 QWFADNPGMS--ELGLRYYQEDAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFR 487 + R++Q AVR + + Q+ L+ + G+GK+ + + + Sbjct: 268 SKGKKRIKKVKKLIFPRFHQLAAVRNILADAQENGAGQKYLIQHSAGSGKSNSISWLAHQ 327 Query: 488 LIQSQR-------FKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED 540 L+ F ++ + DRR L +Q + + +I + E+ Sbjct: 328 LVGLHNKAGNKTIFDTVIVITDRRVLDKQIRDNIKQYQQVKGVVQAITEGSKQLKTALEE 387 Query: 541 STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLD-- 598 KI + T+Q + + I++DEAH + E + + Sbjct: 388 GKKIVITTIQKFPHIVEEIGD--LPGTNFGIIIDEAHSSLSGQMARKLNETLAKVSDEEE 445 Query: 599 -----------------------YVSAYRRILDHFDAVKIALTATPALHTVQIFGEP--- 632 + R++L +A A TATP T+++FG P Sbjct: 446 LQSDLENYDENESNEVTGEDLIRAMVKARKLLP--NASYFAFTATPKNKTLELFGVPYQE 503 Query: 633 --------VYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVIN 684 + Y+ + A+ +GF+ D + + ++ Q ++ Sbjct: 504 NSKTKFRAFHLYSMKQAIEEGFIKDVLQNYTTYQSYYALLKKIEDDPEYDKKKAQKKLKA 563 Query: 685 DTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEEL 744 + + L+I F + ++ G K ++ + A+A + Sbjct: 564 YVESHEHAIKKKSI---LMINQFLENLNKKV------GGKGKAMMVTSSRANAVKYKKAF 614 Query: 745 RAAFKKKYPQLEHDAIIKITGDADKDAR------KVQTMITRFNKERLPNIVVTVDLLTT 798 K + A++ +G+ D + + F K ++ + T Sbjct: 615 DQYLKDINSPYK--AVVGFSGEIDGETEASLNGFPSAKIPDEFEKNEY-RFLLVANKFQT 671 Query: 799 GVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMR 858 G D P + + +K+ Q R R P K + D + +E+ Sbjct: 672 GFDQPLLHTMFVDKKLGGVN-AVQTLSRLNRSHPL--KKETFVLDFANTAEDIENS---- 724 Query: 859 PVVVRPKVELQTLVNEITDSETYKITEA--DGRSFAEHSHEQLVAKLQRIIGLATFNRDR 916 +P E L ++ + + +A + + + E+ K+ + + + Sbjct: 725 ---FKPYFESTILGEATDPNKLFDLQDALDNYQVYTREQVEEFSNKILDNVPVDQLHALL 781 Query: 917 SETIDKQVRRLDELCQDAAGVNFNGF---------ASRLREKGPHWSAEVFNKLPG---- 963 E+ D L+E Q + N L Sbjct: 782 DESSDIFRNDLEEEQQADFRAKVKTYVRLYIFLSQIVEFENAYLERLYIFLNHLQNKLGG 841 Query: 964 ---------FIARLEKLKTDINNLNDAPIFLDIDDEV--VSVKSLYGDYDTPQDFLEAF- 1011 + ++ + + + L+ +++ + + G + ++L Sbjct: 842 DTSVDLAQGILDNIDMDSYRLQLESTTNVVLEQGEDLKPIPTEMRGGVNEPEIEYLSGIL 901 Query: 1012 DSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAA 1071 + +R V ++ + + +E + + + +E++ Sbjct: 902 KAFNERYGTEFEDTDKVRKMAVNVAEGVFKNKEMRNAYEFSDEQNAKITNDKIVSEEMLK 961 Query: 1072 RLIGHIRRAAVGDALKPFEERVDHAL 1097 + + + K +++ + Sbjct: 962 HINDNFNLYKIYSDNKEARADINNMI 987 >UniRef50_Q11PS8 Type I restriction-modification system R subunit n=10 Tax=cellular organisms RepID=Q11PS8_CYTH3 Length = 963 Score = 345 bits (886), Expect = 4e-93, Method: Composition-based stats. Identities = 131/1011 (12%), Positives = 283/1011 (27%), Gaps = 143/1011 (14%) Query: 169 EAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKE 228 + +Q L G ++ A L L+ QL + N + E ++ Sbjct: 11 KQSEQILEEQLLIQLHKLGYEKVILPNEDALLLNLKKQLEKHNKITFSKAEFDKVLNIVN 70 Query: 229 ITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGK 288 K + R I +R G L F N+ + Sbjct: 71 KGSVFEKAKILRQ----RQHI---IRDNG-----DNLYFEFLNTDYWCQNEYQVTNQLSQ 118 Query: 289 DETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNGFLRETLLEHYS 348 E D L + P+ +E KR +++ N+ RY K + Y Sbjct: 119 -EGRYLNRYDVTLLINGLPLVQIELKRRGLELKEAFNQIDRYRK-----HSFGSGHGLYH 172 Query: 349 PDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVRDTRNMSK 408 ++ T + G + + + + +G Sbjct: 173 FVQLFVISNGVNTKYFGNFGIHKQEYLQTFHWTDENNKPLNNILNGF------------- 219 Query: 409 ALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKG----- 463 + P + +M+ + LR YQ AV + K + + Sbjct: 220 -TDTFLEPCHISKMICKYI------VLHETEKKLMVLRPYQYFAVENIIKKVKENEVLNG 272 Query: 464 ---QQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRIN 520 + + TG+GKT T+ L K+++F+VDR+ L Q +E + Sbjct: 273 YDINKNGYIWHTTGSGKTLTSFKASQILSNIPAIKKVVFVVDRKDLDYQTNQEYEKF--S 330 Query: 521 GDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQS---DEPMPVARYDCIVVDEAH 577 +S+ + L KF + + +I V T+Q L + + DE H Sbjct: 331 QGCVSSVGNTDDLIKKFNDPAERIIVTTIQKLNNAISGKNIYKMKAMQDQRMVFIFDECH 390 Query: 578 RGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATP--------ALHTVQI 628 R D ++ I+ +F + T TP T + Sbjct: 391 RSQFGD------------------THKNIVSYFTNIQLFGFTGTPILVENANGEKTTASL 432 Query: 629 FGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLS-----KGEQVERISPQGEVI 683 FG+ +++Y A+ D ++ + + V L + E E + ++ Sbjct: 433 FGKCLHKYVITDAIRDENVLRFSVEYIQTFKQKEHIVDLKIEQINETEVFEAPERKEAIV 492 Query: 684 NDTLEDDQDFEVADFNRGLVIPAFNRAVCN--ELTNYLDPTGSQK----TLV-FCVT--- 733 N L+ + ++ +V E+ + G + T+ F Sbjct: 493 NYILQHHKQKTQQGKYCAMMCVQDIDSVIQYYEILKAMKKAGEHQLKIITIFSFAQNEDP 552 Query: 734 -----------NAHADMVV-------EELRAAFKKKYPQLEHDAIIKITGDADKDARKVQ 775 + E L A + T D+ Sbjct: 553 LDYEIKTELSVVEEPKALYGLPPHRRELLDAYIGDFNQLYD---TAHSTKDSQSFYTYYN 609 Query: 776 TMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVN 835 + + + +I++ ++ TG D + + + ++ L Q R R + N Sbjct: 610 DVAKKAKNNEM-DILLVANMFLTGFDSKYLNTLYVDKNLQYHGL-IQAFSRTNRTH-DKN 666 Query: 836 KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHS 895 KT I ++ + T+ + + + + S Sbjct: 667 KTQGNIVCFRNLKDKTDEAITLFSNREAIDEVIVAPYETYVEEFNKAVNQLKAIVPNVDS 726 Query: 896 HEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSA 955 + L + ++ + + K++ E D + F + + Sbjct: 727 VDDLYTEEDQLKFI--LAFRNMIRLHKKMSHYTEFTWDDLEIEEQSFLDYSSKYQDLKDS 784 Query: 956 EVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVV-----------------SVKSLY 998 V + L+ + ++ + I + +++ + +L Sbjct: 785 IVHKSDKEKTSILDDIDFELELIKKDTINVSYIVQLLFKLKVKKGKKDKEEVEKEIFNLL 844 Query: 999 GDYDTPQDFLEAFDSLVQRSPNAQ-PALQAVINRPRDLTRKGLVELQEWFDRQHFEESSL 1057 + + E + ++ + + A V R + E ++ Sbjct: 845 NTEVSLRSKRELIEKFIKENMSKIVEAEDIVDEFTRFWNEEQQKAFDELVQDENLSAERT 904 Query: 1058 RKAWKET---RNEDIAARLIGHIRRAAVGDALKPFEE--RVDHALTRIKGE 1103 + + E + ++ R AL+ + R+ + Sbjct: 905 QHLIEGYLFSEQEPLRDEILKL-RNEGRPSALQAKDISNRILQRIKDFVNT 954 >UniRef50_O28565 Type I restriction-modification enzyme, R subunit n=1 Tax=Archaeoglobus fulgidus RepID=O28565_ARCFU Length = 957 Score = 345 bits (886), Expect = 4e-93, Method: Composition-based stats. Identities = 130/916 (14%), Positives = 270/916 (29%), Gaps = 127/916 (13%) Query: 263 KTLRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPA 322 KT++ A PE + D LFV P+A++E K+ Sbjct: 89 KTIKLIDYANPEANSLVFSRQVSFA------DIIPDITLFVNGIPLAIIECKKMAKSWKE 142 Query: 323 RLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNG 382 + RY + F + ++ V+ Sbjct: 143 GYAQIKRYEQSAPELFKYVQIGFSFADRLVYF---------------------------- 174 Query: 383 REYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSE 442 I + K + +PE L+++ + + +++ Sbjct: 175 -----------PIVRWEESVPVYEWKPQFDILKPEIFLDLIRYFTIYR----EQDGEITK 219 Query: 443 LGLRYYQEDAVRAVEKA---IVKG---QQEILLAMATGTGKTRTAIAMMFRLIQSQRFKR 496 + RY Q AV ++ + KG + + L+ GTGKT T I ++ Sbjct: 220 VLPRYMQYRAVNSIVERAVGWAKGFEERNKGLIWHWQGTGKTLTMIFSALKIRDLIGNPS 279 Query: 497 ILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLV--- 553 I F+VDR L +Q ++ +I+ + SI +K + + + + Sbjct: 280 IFFVVDRVELQKQLSDELKNLKISYELIESIDHLKEVLSHA-DGKRGFFITLIHKFREEE 338 Query: 554 ----KRTLQSDEPMPVARYDCI-VVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILD 608 + ++ R D + ++DE HR + ++ R IL Sbjct: 339 LAKLREQMEKQHWSIAKRRDVVCLIDEGHRTQYGE---------------LAASMRSILK 383 Query: 609 HFDAVKIALTATP----ALHTVQIFG----EPVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 +A A T TP T FG + RY ++ DG+ + ++ + Sbjct: 384 --NASFFAFTGTPIAKKGRDTYLAFGYPDEPYLDRYFILDSIDDGYTVKIAFQSRLDEVH 441 Query: 661 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLD 720 ++ E + +E D + L + ++ ++ Sbjct: 442 LDRENLEIFLS--SKLEEIPEEYREKVEQDLKRRLNKVKVILEDKKRIERIARDIASHYI 499 Query: 721 PT-GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD------------- 766 K +V V+ + L + ++ + + Sbjct: 500 QFVKPFKAMVVAVSRNACLYYKQALDKFLNENETEIVMTFQQNDSKELLDYLEKLRKKYG 559 Query: 767 ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGR 826 + + +ITRF K P I++ D+L TG D P + + + ++ L Q R Sbjct: 560 KSELKEIHEEIITRFKKYENPKILIVTDMLLTGFDAPILQTLYLDKPLKEHRLL-QAIAR 618 Query: 827 ATRLCPEVN---KTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKI 883 R + K + + D V ++ L+ M + + + Sbjct: 619 TNRPFVKDGENLKGAGLVVDYVGVFKFLKKAFEMYEEEDIRGAAYELEELKEELRKKLDE 678 Query: 884 TEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDE---LCQDAAGVNFN 940 + + + + I A R I R L E ++ + Sbjct: 679 AFRFFDFELSYDRDTIDRAVLVISARADEFRKLYSEIRNLYRLLLEDRIEFKEKFDLLSE 738 Query: 941 GFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDIN--NLNDAPIFLDIDDEVVSVKSLY 998 + L+ + + + + L+ + I+ + ++I+DE + Sbjct: 739 VYHVYLQRENQLEAEIEQKRDQFYREALKFIHETIDVQRIKKDYPIIEINDEFLERVKKK 798 Query: 999 GDYDTPQDFLEAFDSLVQRSPNAQPALQA--------VINRPRDLTRKGLVELQEWFDRQ 1050 D L + ++ + + R D + ++ L E + + Sbjct: 799 EKR-RIYDILFPVRNYARKVGDEDLIARVERIVKDWNERRRDADEVYREVLSLAEKVNEE 857 Query: 1051 HFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHA-LTRIKGENDWSSE 1109 E LR + KE + + DA K + V + + S Sbjct: 858 RKERERLRLSEKEYGVFKLLKSHATAANERELVDATKAIMDIVKARTFPKWYEK---SEV 914 Query: 1110 QLSWLDRLAQALKEKV 1125 + L E+ Sbjct: 915 VQEIEREVLLYLIERG 930 >UniRef50_B3PQK7 Probable type I restriction-modification system protein, restriction subunit n=1 Tax=Rhizobium etli CIAT 652 RepID=B3PQK7_RHIE6 Length = 1022 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 135/913 (14%), Positives = 273/913 (29%), Gaps = 138/913 (15%) Query: 257 GWQADSKTLRFSKGARPEPGVNKAIAEWPT-GKDETGNQGFADYVLFVGLKPIAVVEAKR 315 G T+RF P E GK D VL+V + V+E K+ Sbjct: 104 GPGEAPVTVRFIDWENPAGNDLGVAEEVAVKGKSAKTYNKRPDLVLYVNGIALGVIELKK 163 Query: 316 NNIDVPARLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIP 375 + I V + + DN + + Q F + Sbjct: 164 STIGVGEGIRQ------TLDNQRPEFIRHFFTTVQITFAGNDSEGLRYAPIQTPQPFWL- 216 Query: 376 FCYSTNGREYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFA 435 W D + + + + P LE++ Sbjct: 217 -------------------AWKEDSEIISRLDRDVTQMMAPARFLELIHDFTLFD----- 252 Query: 436 DNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFK 495 G + R Q AV+A ++ + ++ ++ G+GK+ + + + + Sbjct: 253 ---GGIKKLARPNQYFAVKAAQERVRA-KEGGIIWQTQGSGKSLIMVMLARWIREHYPDG 308 Query: 496 RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKR 555 R+L + DR+ L Q F GD L + + +I + + KR Sbjct: 309 RVLIVTDRKELDRQIEDVF---GNTGDKVRRARTGNDLMAALADPTDRIICSLIHKFGKR 365 Query: 556 TLQSDEPMPVARYD----------CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRR 605 E + + + +DEAHR A R+ Sbjct: 366 EQGEMEGLVADIQNSKVGAPAGEFFVFIDEAHRTQSG---------------KLAKAMRQ 410 Query: 606 ILDHFDAVKIALTATP-----ALHTVQIFGEPVYR-YTYRTAVIDGFLIDQDPPIQIITR 659 I+ A+ I T TP +++ FG + Y + AV DG ++D + Sbjct: 411 IMPQ--AMFIGFTGTPLLRSDKGTSLETFGPYIGTPYRFDEAVEDGVVLDLRYEAR---- 464 Query: 660 NAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYL 719 + S G+ + + + + R L + N++ + Sbjct: 465 -DIDQRITSPGKIDAWFESRTKNLTPIAKASLKQRWGTLQRVLSSKDRLEQIANDIIMDM 523 Query: 720 D-----PTGSQKTLVFCVTNAHADMVVEELRA---------AFKKKYPQLEHDAIIKITG 765 + G ++ + A E R A Y + + + TG Sbjct: 524 ELKPRLKAGRGNAMLVAGSIPEACKFFEIFRKSGSVLASNCAIVTSYKRAAPELNGEETG 583 Query: 766 DADKDAR-----------------KVQTMITRFNKE-RLPNIVVTVDLLTTGVDIPSICN 807 + + + Q + F E +++ V L TG D P+ Sbjct: 584 MGETEKQYVHRVYTDLLGERSEEDYEQEALRLFKDEPGRMKLLIVVSRLLTGFDAPTATF 643 Query: 808 IVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVE 867 + +++R L+ Q R RL +K I D D++ +E+ + + Sbjct: 644 LYIDKQMRDHGLF-QAICRVNRL-DGDDKDFGYIVDYKDLFRNIENAVDDYTSEAFDEFD 701 Query: 868 LQT----LVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQ 923 + + N ++ T D + EQ + ++ ++ + ++ Sbjct: 702 KEDVRGLITNRAEQADDDLQTARDAWLGLLDAVEQPKGDDEIFAYFSSPQGLENDPLSEE 761 Query: 924 VRRLDELCQDAAGVNFNGFASRLREKGPHWSAEV-FNKLPGFIARLEKLKTDINNLNDAP 982 R + AG +A+ E G E+ ++ + R ++ + + Sbjct: 762 KGRRRQALYRLAGHYARAYANVASEPGGSGFNELELAEIRNEVERAISIRDAVRLHSGDA 821 Query: 983 IFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTR----- 1037 + L + + + ++ A DS V + + V + D Sbjct: 822 VDLKLYEPAMRHLIDT--------YIRAEDSTVISHLDDISLIDLVQTKGADAIHGLPTP 873 Query: 1038 ------KGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEE 1091 ++ R EE+ + + E + + L+ R A+ A + E Sbjct: 874 SKGKQSNVAEAIENNVRRLIIEETPVNPKFYEM-MSQLLSDLVAQRRNDAMEYA--DYLE 930 Query: 1092 RVDHALTRIKGEN 1104 R+ + R K + Sbjct: 931 RISELVRRAKEGH 943 >UniRef50_C6DAA4 Type I site-specific deoxyribonuclease, HsdR family n=15 Tax=Bacteria RepID=C6DAA4_PECCP Length = 1031 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 149/1021 (14%), Positives = 317/1021 (31%), Gaps = 157/1021 (15%) Query: 158 VREKAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQ 217 RE+A Q ++ Q L + +A+ + + +Q Sbjct: 6 QRERATQQRLIQFFVQDLEYRYLSRSAGYAGDSNIDAEILSAWLKRRGVSDTLITRVLRQ 65 Query: 218 TEQERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGV 277 + K+ ++E R L K G ++T+ A PE Sbjct: 66 LDSAAAL-------GEGKKLYYANKEVYRLLRYGVKEKEGAGEQNQTVWLIDWAHPEAND 118 Query: 278 NKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNESYRYSKCFDNG 337 E + + D VL+V + V+E KR++++V + + DN Sbjct: 119 FAIADEVTV---KGEYRKRPDLVLYVNGIALGVIELKRSSVNVSEGIRQ------NLDNQ 169 Query: 338 FLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWY 397 + V + T +++ + W Sbjct: 170 KKTFIRNFFTTIQLVMAGNDTQGLRYGTTETPEKYYL--------------------AWK 209 Query: 398 RDVRDTRN--MSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRA 455 D DT + L LL+++ + + R+ Q V A Sbjct: 210 EDNPDTGTHKLDFHLSRLCSKSRLLDIVHNYIAFD--------AGVKKLCRHNQFFGVEA 261 Query: 456 VEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFE 515 ++ I + ++ ++ G+GK+ T + + + ++ R+L + DR L EQ F Sbjct: 262 AKQHITR-REGGIIWHTQGSGKSLTMVWLAKWIRENMPNSRVLIVTDRTELDEQIESVFM 320 Query: 516 DTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYD------ 569 + L + + + V +R+ ++++ + Sbjct: 321 GV---DEDIYRTSSGNDLIATLNHPNPWLICSLVHKFGRRS-EAEDSAATDAFITELQQS 376 Query: 570 -----------CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALT 618 + VDE HR +A IL A+ I T Sbjct: 377 LTKTFRAKGDLFVFVDECHRTQSGKLH---------------NAMTTILPE--ALFIGFT 419 Query: 619 ATP-----ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQV 673 TP +V++FG ++ Y + AV DG ++D + I + + Sbjct: 420 GTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVVLDLRYEARDIDQYLTSEKKVD----- 474 Query: 674 ERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT-----GSQKTL 728 + + +++ + + + L + + N++ +D G + Sbjct: 475 DWFEAKTRGLSNLAKTQLKQKWGSMQKLLSSKSRLEQIVNDILLDMDTRPRLMDGRGNAM 534 Query: 729 VFCVTNAHADMVVEELRA-------------------------------------AFKKK 751 + C + A V E ++K Sbjct: 535 LVCSSVYQACKVYEMFSQTDLAGKVAIVTSFRPDAASIKGEETGAGLTEKLFKFSTYRKM 594 Query: 752 YPQLEHDAIIKITGDADKDARKVQTMITRF-NKERLPNIVVTVDLLTTGVDIPSICNIVF 810 + KI G + R+V+ RF N+ +++ VD L TG D PS + Sbjct: 595 LADYFEQSEEKIAGRIAEFEREVKQ---RFINEPGQMRLLIVVDKLLTGFDAPSATYLYI 651 Query: 811 LRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQT 870 + + L+ Q R RL +K I D D++ +L+ T + + Sbjct: 652 DKTMTDHTLF-QAICRVNRL-DGEDKEYGYIIDYKDLFRSLDKAITDYTTGAFDDYDQED 709 Query: 871 LVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFN-----RDRSETIDKQVR 925 + + + + + D S + V + + + +++ +K+ Sbjct: 710 VDGLLKNRLEQEKLDLDSALEVVRSLCESVRAPRSLQDYQHYFCGESGENQTALSEKEAL 769 Query: 926 RLDELCQDA-AGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIF 984 RL A + A+ + E G ++ E + +A EKL+ +I + + Sbjct: 770 RLSFYQNVARLLRAYASLANEMPEAG--YTIEEAESIRAEVAEFEKLRYEIKLTSGDLLD 827 Query: 985 LDIDDEVVSVKSLYGDYDTPQDFLEAFDS--LVQRSPNA-QPALQAVINRPRDLTRKGLV 1041 + + + + L F+ L++ AL A+ + R+ Sbjct: 828 MKRFEPAMRHLLDMYVRADGSEVLMDFEELSLIELIVEKGAAALSALPDDIRNNQDAMAE 887 Query: 1042 ELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIK 1101 ++ + +E+ + + R + LI R+ A+ + + ER+ ++ Sbjct: 888 TIENNVRKTIVDENPVNPKYY-GRMSLLLDELITLRRQNALDY--QQYLERIRDLCKQVI 944 Query: 1102 G 1102 Sbjct: 945 R 945 >UniRef50_Q6MH63 Type I restriction-modification system restriction subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MH63_BDEBA Length = 1075 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 137/879 (15%), Positives = 270/879 (30%), Gaps = 118/879 (13%) Query: 265 LRFSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNID--VPA 322 L F E + + E+ ++ D V+ + P+A +E K+ + V Sbjct: 118 LHFFDFINIENNILQVTEEFSVQRNGRKQHYIPDIVILINGLPLAAIECKKPGLPDAVKK 177 Query: 323 RLNESYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNG 382 + + R G + L + +Y T +K S Sbjct: 178 GIEQQLRNQN--RTGITKFYLFQQILGSVAGSTGAKYGTIGTSEEFWAIWKESKYDSKES 235 Query: 383 REYRATMKTKSG--------------------IWYRDVRDTRNMSKALPEWHRPEELLEM 422 + + IW R+ + + RP+ LL++ Sbjct: 236 LLKKLVNQEIDSKVKDKIFEFRAYSDRRAMEVIWDSGSREVTIQDQCIHFVFRPDRLLDI 295 Query: 423 LGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVK-----GQQEILLAMATGTGK 477 + + +N +++ R+ Q AV+ K + + ++ TG+GK Sbjct: 296 IQNFIIFEND--------TKIAPRHQQYFAVKESLKRVQTIKEDGARDGGVIWHTTGSGK 347 Query: 478 TRTAIAMMFRLIQSQRFK----RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGL 533 + T + + L + FK +I+ + DR L EQ FE + L Sbjct: 348 SYTMVMLAKSLADAVEFKSKNAKIIVVTDRVDLDEQITETFEKCG---KAPVQAKSGEHL 404 Query: 534 TDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQF 593 ++ + + +S + + ++VDE HR + Sbjct: 405 SELIQSRGYSVLTTIIDKFES-VAKSHKVTDESENVFVLVDEGHRSQFGETHALMKNTFK 463 Query: 594 RSQLDYVSAYRRILDHFDAVKIALTATPALH----------TVQIFGEPVYRYTYRTAVI 643 A IA T TP T FGE +++YT A+ Sbjct: 464 -----------------KAAFIAFTGTPIRKVKKDEAVAKSTEVQFGEFIHKYTMENALE 506 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV 703 DG + ++ N + ++V + + + + L Sbjct: 507 DGAVCPIVYEGRMGELNGNKDQLDRWFDRVTKDLNEEQKAALKKRFSME------EEILK 560 Query: 704 IPAFNRAVCNELTNYLDPT---------GSQKTLVFCVTNAHADMVVEELRAAFKKKY-- 752 RA+ ++ N+ K + T A L + Sbjct: 561 ADDRIRAIALDIKNHYRENFRQEGEPTKDFMKGQLATNTKGEALAYKRYLDEFGIRTSLV 620 Query: 753 --PQLEHDAIIKITGDADKD---------------ARKVQTMITRFNKERLPNIVVTVDL 795 P + I D + + T+I F K+ +P I++ VD Sbjct: 621 ISPPEMREGSKSIEDDDRPEVVKFWDECMKRYGSAKKYQDTIIDNFKKDDVPEILIVVDK 680 Query: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD 855 L TG D P + +K++ + Q R RL P K+ + D I+ + Sbjct: 681 LLTGFDAPRNAVLYIDKKLKEHNVL-QAIARVNRLYPR--KSEGLVIDYRGIFDDMTQAI 737 Query: 856 TMRPVVVRPKVELQTLVNEITDS-ETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNR 914 + ++L+ + + + D E K + +S EH IG + Sbjct: 738 DFYRKMEGNDIDLEDIKDTLFDKSEEVKKLDPAIKSLNEHFSSISNMTDDEEIGRYLADE 797 Query: 915 DRSETIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTD 974 +R + ++ R + + A G ++ + P + + F A L + Sbjct: 798 NRRKDFYEKFRHFHNVYKLALG------YAKWTYETPEQKKNEYARKYKFYANLRTVIK- 850 Query: 975 INNLNDAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRD 1034 D + D ++ + + D P+ +E FD + + ++ R Sbjct: 851 -ERYPDGINYEDYIADIRRLVDVNLKADPPKLIVERFDIFNKEKFEEETKAKSKGARADI 909 Query: 1035 LTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARL 1073 + + E FD +L + +ET + I R+ Sbjct: 910 IKGMASSHISERFDEDPIFYKNLSQVIEETYLKYIDRRI 948 >UniRef50_B0VF77 DEAD/DEAH box helicase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VF77_9BACT Length = 1011 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 138/940 (14%), Positives = 295/940 (31%), Gaps = 128/940 (13%) Query: 285 PTGKDETGNQGFADYVLFVGLKPIAVVEAKRNN--IDVPARLNESYRYSKCFDNGFLRET 342 Q D VL + P+A +E K +V + + Y D Sbjct: 124 RQVFYHPDKQQSIDMVLAINGIPVATLELKNPGTGQNVKHAIKQ---YQNDRDPS---AP 177 Query: 343 LLEHYSPDEVHEAVPEYETSWQD-TSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRDVR 401 LL + VH AV E ++ +PF +N ++ K + Sbjct: 178 LLSFKTGALVHFAVDTDEVYMTTHLMKQKTSFLPFNRGSN---PQSVDCGKGNPIHPSGH 234 Query: 402 DTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIV 461 T + + + +P+ LLE++GS +N D + RY+Q D+VR + + Sbjct: 235 RTAYLWEDV---LQPDSLLEIVGSFIFIENAGKKDEHI---IFPRYHQLDSVRRLLAQVK 288 Query: 462 KGQ--QEILLAMATGTGKTRTAIAMMFRLIQSQR------FKRILFLVDRRSLGEQALGA 513 Q + L+ + G+GKT + + RL F ++ + DR L Q A Sbjct: 289 SDQTGKNYLIQHSAGSGKTNSISWLAHRLANLHTDQDKLIFDCVIVITDRVVLDRQLQDA 348 Query: 514 FEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL---------------- 557 I + D TKI + T+Q Sbjct: 349 IYQIEHAMGVVAPIKEGSQQLANALVDGTKIVITTLQKFPFILRGLLRIAGAKDTDMPDE 408 Query: 558 ------QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRS--QLDYVSAYRRILD- 608 ++ + R I+VDEAH + + ++ + + V ++ L+ Sbjct: 409 AALLKSKAWQKKIAGRKYAIIVDEAHSSQTGEAARDMKQILGDKAVRTEDVEDWQDELNL 468 Query: 609 -------HFDAVKIALTATPALHTVQIF---GEPVYRYTYRTAVIDGFLIDQDPPIQIIT 658 + A TATP T+++F G+ + Y+ R A+ +GF++D + Sbjct: 469 VMESRGQQPNLSFFAFTATPKGKTLELFGTHGKAFHNYSMRQAIEEGFILDVLQRYTTYS 528 Query: 659 RNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNY 718 + + + ++ ++ + + Sbjct: 529 TYFKMIKKTADDPSMPAKKAAKKLCKFMRLHPRNVSQK-----------TEIIIEHFRSC 577 Query: 719 LDP--TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQ- 775 + P K +V + A + + + + H ++ +G +++ Sbjct: 578 IMPLIGRKAKAMVVTDSRLQAVRYMLAFQKYIGENHYTDVH-PLVAFSGTVIDPETELEY 636 Query: 776 ------------------TMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSR 817 + RF E I++ + TG D P +C + +++ Sbjct: 637 TEPGMNIDYKNGRHISETQLKDRFGSEDY-QILLVANKYQTGYDQPQLCAMYVDKRLDG- 694 Query: 818 ILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITD 877 + Q R R+ P K + + D V+ + + +P + L +E Sbjct: 695 VQAVQTLSRLNRIYP--GKEAPFVLDFVNKAEDILAA-------FKPYYTVTELESESDP 745 Query: 878 SETYKITEADGRSFAEHSHE-QLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAG 936 + +I + E + AK+ D + ++ Q + Sbjct: 746 THLEEIKHELNQMQIYDWKEVEDFAKIFYKPLGEQKRGDHAALQKHLQSAVERYKQLESD 805 Query: 937 VNFNGFASRLREKGPHWS-----AEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEV 991 + + F +L+ ++ ++ + + + +D+ D Sbjct: 806 EDRDKFHDKLKAYVRLYAFVTQLINYTDQEQEMLYSFGRFLLPHIHPSDSRDAYPEKDVE 865 Query: 992 VSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQ- 1050 + L + D E + V+ + ++P L E+ E + + Sbjct: 866 LQYYRLQKVMEGSIDLSEGEEVKVKSPTDTGTRKAKEEDKP-------LSEIIETLNERF 918 Query: 1051 --HFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSS 1108 F E+ R +++ + + ++ AA + L FE ++ + + Sbjct: 919 GTDFSEAD-RLFFEQIKETALQDE--SVLKTAA-ANPLDKFELGIEQIIKDLMMNR-LKE 973 Query: 1109 EQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKAMLQR 1148 + R K + V+ ++ F+ G +R Sbjct: 974 NDK-IVSRYMDDEKFQKVI-FNLLSKELFNDINGDYNAKR 1011 >UniRef50_A6LY59 Type III restriction protein, res subunit n=2 Tax=Clostridium RepID=A6LY59_CLOB8 Length = 993 Score = 345 bits (884), Expect = 8e-93, Method: Composition-based stats. Identities = 153/1024 (14%), Positives = 310/1024 (30%), Gaps = 119/1024 (11%) Query: 171 QQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYHKEIT 230 +++ L + G +Q + + L+ L + +E K Sbjct: 4 KEKNLEESIEDYLVSIGYEQGISHEFDLQHCLLKDDLFRFLEATQNELIEEFKGTRGAGY 63 Query: 231 DQAIKRTLNLSEEESRFLIDAQLR---------KAGWQADSKTLRFSKGARPEPGVNKAI 281 +A ++ S + R LID K + +K A + N Sbjct: 64 KKAFLDLVD-SHIKKRGLIDVLRNGITDIMMNGKFEFVYFKPNSNLNKTAIDKYNENIFK 122 Query: 282 AEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR--NNIDVPARLNESYRYSKCFDNGFL 339 T N D VL + P+ V+E K N +V + + + F Sbjct: 123 ITRQFKY-STKNNNTLDVVLSINGFPVIVIELKNQFTNQNVYDAIKQYKEDRDPKEKLFG 181 Query: 340 RETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMKTKSGIWYRD 399 + G + F +PF N + T++ K Sbjct: 182 FNE-----RVLVYFTVDTDEVYMTTQLKGDKTFFLPFNKGNNKGKGNPTVEGKV------ 230 Query: 400 VRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKA 459 T + + + + LL+++ Q ++ + RY+Q DAVR + K Sbjct: 231 --KTHYLWEEI---LVHDSLLDIINRFYFIQED---EDKKKKAIFPRYHQLDAVRKMVKD 282 Query: 460 IV--KGQQEILLAMATGTGKTRTAIAMMFRLIQSQR------FKRILFLVDRRSLGEQAL 511 + K L+ + G+GKT T RL F ++ + DR+ L +Q Sbjct: 283 LEVNKAGLNYLIQHSAGSGKTNTIAWSAHRLSSLHDEENNPIFDSVIVITDRKVLDKQLQ 342 Query: 512 GAFEDTRINGDTFNSIFDIKGLTD--KFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYD 569 A I D K +D K E KI + T+Q + + Sbjct: 343 DAIYQLEHKKGLVVKIDDKKNSSDLAKAIESGVKIIITTIQKFPYALQKIESLEKRKY-- 400 Query: 570 CIVVDEAHRGYILDKEQTEGELQFRSQLDYVS---------------AYRRILDHF---- 610 +++DEAH + E L+ + +++ Sbjct: 401 AVIIDEAHSSTAGENMGALKETLAGKTLEEAAKQESEEEKNEKSSMDKMTDLIEKRTDLG 460 Query: 611 DAVKIALTATPALHTVQIFGEP--------VYRYTYRTAVIDGFLIDQDPPIQIITRNAQ 662 + A TATP T+QIFG + Y+ R A+ + F++D ++ + Sbjct: 461 NVSFFAFTATPKNKTLQIFGRAGEDGKSHEFHLYSMRQAIEEKFILDVLKNYMPVSVYYK 520 Query: 663 EGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPT 722 G ++ + ++ + + ++ I + ++ + Sbjct: 521 VGKKIADNPEFDKGEAKKAINRFVSLNEH-----------NIRQKVETIVDDFMDNRSMW 569 Query: 723 --GSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDA-------RK 773 G K +V + HA + K+K ++ T ++ R Sbjct: 570 IDGKAKGMVVTASRLHAVRYKIAIDKYIKEKGYNIKALVAFSGTVKDGEEEFTEVEMNRI 629 Query: 774 VQTMITRFN-----KERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRAT 828 V IT N + I++ + TG D P +C + +K+ + Q R Sbjct: 630 VAADITDSNLPNIFDKNDFKILIVAEKYQTGFDQPKLCAMYVDKKLDG-VKTVQTLSRLN 688 Query: 829 RLCPEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVEL---QTLVNEITDSETYKI 883 R P + D + ++ + + L ++ + Y Sbjct: 689 RTYPSK---QTFVLDFQNSTEDIQEAYKPYFEATNIDKVTDPNVVNDLWYQLHEYGIYND 745 Query: 884 TEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFA 943 E + + + ++ + ++ + +R ++ E + A F Sbjct: 746 EELNDFAILYYKEKRTANQDAKMNNIIDKGVERFCLLEANSEEEGEEFKKKASKYIT-FY 804 Query: 944 SRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVKSLYGDYDT 1003 + L + P + + +A L+KL + D L +D ++ L D Sbjct: 805 NFLLQIYPLKNLNLLRLQIYLVALLKKLPKTGKHKIDIDNLLSLD--YYKLQKLGKDDKR 862 Query: 1004 PQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKE 1063 +D + Q+ IN P + +++ + E R + Sbjct: 863 GEDI--SLSYGEGELVGISEDAQSRINEPEEEYLDDIIKRINDIFGINLTEED-RIIIDQ 919 Query: 1064 TRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKE 1123 + + ++ +E+ V S+ + DRL + + Sbjct: 920 Y------EEMFKNDKQVMDIAKANSYEDLVKTFAKSHFKRGIIKSKNRN--DRLVKEILT 971 Query: 1124 KVVL 1127 L Sbjct: 972 NGNL 975 >UniRef50_C3WN61 Type I restriction-modification system restriction subunit n=8 Tax=Bacteria RepID=C3WN61_9FUSO Length = 983 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 119/894 (13%), Positives = 264/894 (29%), Gaps = 105/894 (11%) Query: 273 PEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR----NNIDVPARLNESY 328 E N E D +F+ PI +E K + Sbjct: 131 KEFEQNIFSVTNQLTFSERNKGLELDIAIFINGLPIITMELKSRASSTGWTYKDAEEQYK 190 Query: 329 RYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYST-NGREYRA 387 K + F + T K +PF T NG Sbjct: 191 NDRKPIEPLFS------FKRCMAHFAVDENFITFTTKLDDKNTVFMPFNKGTENGGSGNP 244 Query: 388 TMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRY 447 + ++ + L ++ N + RY Sbjct: 245 INP-----------NGTMTDYLWKDFLDKKVLTSLIKDFSYVDNNKV-------LVFPRY 286 Query: 448 YQEDAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLIQ-------------SQ 492 +Q V + + ++K + L+ + G+GK+ + + +RL++ + Sbjct: 287 HQYRVVTKLVEDVMKNGVGKNYLIQHSAGSGKSNSITWLAYRLVEVARKVQNGDISKFEK 346 Query: 493 RFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSL 552 F ++ + DR +L +Q L + + KI +AT+Q Sbjct: 347 IFNSVIVVTDRLNLDKQIDDNIRKFIDVRSVVGHASSSTDLKNLLV-NEKKIIIATIQKF 405 Query: 553 VKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFD- 611 L+ + I++DEAH + + I D + Sbjct: 406 -PYLLEKIGTELKGKNFAIIIDEAHSSQSGRAAASLNMAVSATIDINDDNDFEIEDKLNE 464 Query: 612 ----------AVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNA 661 A A TATP T+Q+FG Y+ + A+ +GF++D Sbjct: 465 LIEARKMPENASFFAFTATPKAKTLQMFGNVFDLYSMKQAIEEGFILDVLKNYTYYENFY 524 Query: 662 QEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDP 721 + + ++ Q ++ + +++ F ++ Sbjct: 525 KIKKSVEDNPIFDKKKAQKKIRKYVECQEFPIREK---AEVMVEHFLHNTATKI------ 575 Query: 722 TGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKV------- 774 G K +V + A + KK +A+I +G+ + + + V Sbjct: 576 AGQAKAMVVTQSILSAIEYYHCINDMLKKSNTGY--EALIAFSGEKEYNGKTVTEASLNG 633 Query: 775 ---QTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLC 831 +T+F + + +++ D TG D P + + + + + Q R R Sbjct: 634 FPDNETVTKFKEAKY-KLLIVADKYQTGYDEPLLHTMYVDKVLND-VKAVQTLSRLNRC- 690 Query: 832 PEVNKTSFKIFDCVDIYSTLESV--DTMRPVVVRPKVELQTLVNEITDSETYKITEADGR 889 NK I D + ++ + + +V+ L N ++ ++ + E D Sbjct: 691 -TKNKIDTCIIDFANKPEHIQEAFQPYYKETKLDGEVDPNKLFNLLSVLDSKYVYEKDEV 749 Query: 890 SFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLDELCQDAAGVNFNGFASRLREK 949 + ++ +I + +R + ++ + + + +N AS L Sbjct: 750 DELVELFLKNCSR-DKIDNIIDVAVERYNALSEEDQVEFKSGVKSFIRTYNFLASILVVG 808 Query: 950 GPHWSAEVF--------------NKLPGFIARLEKLKTDINNLNDAPIFLDIDDEVVSVK 995 W +V + G + ++ + N I L+ D + Sbjct: 809 QIEWEKKVIFFEHLIHRLPTPTEDLAKGILETIDLESYRLEKKNTIDIILEDKDGAIE-G 867 Query: 996 SLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVEL-QEWFDRQHFEE 1054 + G + L +++V + + + +D + + EL + F+ Sbjct: 868 AGIGAARKSEAELTPLENIVSTFND---VFGNIEWQDKDNVIRQIKELPEMVMKNDKFKN 924 Query: 1055 SSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGENDWSS 1108 + + ++ + E A L + + + + + + Sbjct: 925 ALINSDFENIKREYSIA-LRDVFKNIMKDNMELFGQWTNNSDFKKWIDNAIFEE 977 >UniRef50_A9DR70 DEAD/DEAH box helicase-like protein n=1 Tax=Kordia algicida OT-1 RepID=A9DR70_9FLAO Length = 1021 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 130/919 (14%), Positives = 267/919 (29%), Gaps = 109/919 (11%) Query: 267 FSKGARPEPGVNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRNNIDVPARLNE 326 ++K A+ N N+ D V+F+ P+ +E K A N Sbjct: 105 YNKKAQDLFEKNLFTVTQEL-MYTDANRNEIDLVVFLNGLPVVTMELKNAFTH-QAVKNA 162 Query: 327 SYRYSKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYR 386 +Y + ++ + A + + ++ F +PF N +Y Sbjct: 163 IKQYRNTRNP---KDLIFNFGRCMVHFAADTDLVYMATALANEKTFFLPFNKGLNNGDYI 219 Query: 387 ATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQW---------FADN 437 A + + T + K + + ++G Q Sbjct: 220 APFGAGNPEVD-EGIKTSYLWKEI---LEKRSFINIIGQFAQVVKDDDDPCNKKLGIKKK 275 Query: 438 PGMSELGLRYYQEDAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLI------ 489 + RY+Q VR + + + L+ + G+GK+ + + +L+ Sbjct: 276 SSPKLIFPRYHQLKVVRDLLYDVKHQGIGKRYLIQHSAGSGKSNSITWLAHQLVGLYDKT 335 Query: 490 -QSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPE----DSTKI 544 + F ++ + DR L Q + T +I G + + KI Sbjct: 336 NTNHLFDSVIVVTDRTVLDRQIRENIKRFAQVKSTVEAITGKSGSKTSQLKVALANKKKI 395 Query: 545 HVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSA-- 602 + TVQ+ + D+ I++DEAH D D + Sbjct: 396 IICTVQTFPFLLKEMDDLQESNFG--IIIDEAHSSQSGDTAAKMNAALAGKGFDDLPKNE 453 Query: 603 -----YRRILDHF--------DAVKIALTATPALHTVQIFG----------------EPV 633 I++H +A A TATP T++ FG +P Sbjct: 454 DGSIDTDDIVNHIIESRKMLKNASYFAFTATPKNKTLETFGVPYKDFGDNGLEKTKFKPF 513 Query: 634 YRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDF 693 + Y+ + A+ + F++D + K ++ E ++ + + F Sbjct: 514 HTYSMKQAIEEEFILDVLANYTTYNSYYKLISQAKKHKEFEIKEANKKLRSYV--EGHKF 571 Query: 694 EVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYP 753 + + + +V + G K ++ C + A A + + K+ Sbjct: 572 AITEKAKIMVNHFHQEV-------HHLINGKAKAMIVCKSIASAMKYKDAVDDYLKEIKS 624 Query: 754 QLEHDAIIK-----------ITGDADKDARKVQTMI-TRFNKERLPNIVVTVDLLTTGVD 801 +T + + I +F K++ ++ + TG D Sbjct: 625 PYRSIVAFSGKAKHYSTGIEMTEASMNNFEDGDNDIPCQFKKDKY-RFLIVANKYQTGFD 683 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYST----LESVDTM 857 P + + +++ S + Q R R +K + D + + T Sbjct: 684 QPLLHTMYVDKQL-SSVAAVQTLSRLNRAYK-PHKKDTFVLDFFNKLEDIKVAFQDYYTT 741 Query: 858 RPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRS 917 + + + + E F + + K + +I + + D Sbjct: 742 TILSEETDINKLNDLQDNLAGYQVYSPEIIEEHFTLYYNNVDRNKTEPLIKRSVYYFDSE 801 Query: 918 ETIDKQV----------RRLDELCQDAAGVNFNGFA--SRLREKGPHWSAEVFNKLPGFI 965 T D+++ R L + N L+ P E I Sbjct: 802 LTKDEKINFKSQAKSFVRTYSYLAKIVDVQNPEWEILWLYLKYLTPLLKIEDEPDDENII 861 Query: 966 ARLEKLKTDINNLNDAPIFL---DIDDEVVSVKSLYGDYDTPQDFLEAF-DSLVQRSPN- 1020 + ++ I L E + V + D LE+ + +R + Sbjct: 862 EAINMDSYRVSRHQQGKIDLVAEPASIEPIPVSEGGFGIEKAYDTLESILNEFNKRFGDI 921 Query: 1021 AQPALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIRRA 1080 V R K + E QE + + S + + D+ LI + Sbjct: 922 EWTDNDKVKQRLSIEIPKRIRENQEQMAVFNNSDKSNARDYMNKIVTDVMKELIFSSKGD 981 Query: 1081 AVGDALKPFEERVDHALTR 1099 V D + + Sbjct: 982 LVVDTEIYKTFADNADFKQ 1000 >UniRef50_A4XPS1 Type I site-specific deoxyribonuclease, HsdR family n=5 Tax=Proteobacteria RepID=A4XPS1_PSEMY Length = 1087 Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 151/1104 (13%), Positives = 310/1104 (28%), Gaps = 152/1104 (13%) Query: 162 AQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQE 221 + + Q Q ++ + + + + L A ++ + Sbjct: 7 VEQPFLQQLQAQGWTVIDQGTVVPQDPMPSLRSSFRQWLLPEVFDAAVRSINRTDDGREW 66 Query: 222 RKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQAD------SKTLRFSKGARPEP 275 + + R N + E+ + A L KA ++ +R PE Sbjct: 67 LTDKQLDDLRGQLLRQPNRTLLEANEAVQALLFKAQVDSNELTGEADPIVRLIDFHTPEN 126 Query: 276 GVNKAIAEWPTGKDETGNQ-GFADYVLFVGLKPIAVVEAKRNNID----VPARLNESYRY 330 AI ++ D VLFV P+ VVE K+ + + + RY Sbjct: 127 NRFHAINQFRIDTPGCVRAFIIPDIVLFVNGIPLVVVECKKGSATCANPMQEAFVQLQRY 186 Query: 331 SKCFDNGFLRETLLEHYSPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTNGREYRATMK 390 + + + E P S + + T+G E+ K Sbjct: 187 MRKRKE----------TAAAGLTEGEPRLFHSSLLLIRSCGLEADYGTITSGEEHFYGWK 236 Query: 391 TKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQE 450 T + + LL++L + + D ++ RY Q Sbjct: 237 TLYPANDAASEGMNAQQRLIAGMLTRHNLLQILRTSSVFMD---TDGGPRIKVVCRYQQF 293 Query: 451 DAVRAVEKAIVKGQ----QEILLAMATGTGKTRTAIAMMFRLIQSQRFK--RILFLVDRR 504 A + + + G+ + ++ G+GK+ T + + L S+ +++ + DR+ Sbjct: 294 RAANKIIERLRSGKTAMERGGVVWHTQGSGKSLTMVFLARMLRASRDLNDYKVILVNDRQ 353 Query: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTL------- 557 L EQ + G N I + L +S+ I++ V + Sbjct: 354 DLEEQLGET---ATLIGGRVNVIETRQDLRKHLATESSDINMVMVHKFQEHKQTLTNTVA 410 Query: 558 ------------QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRR 605 ++ + + +++DEAHR D + E Sbjct: 411 EALGTYLAMPSGKTFGVVNTSDRIILMIDEAHRTQSSDLGENLFEAFP------------ 458 Query: 606 ILDHFDAVKIALTATP-------ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIIT 658 +A +IA T TP T + FGE + Y AV DG + + Sbjct: 459 -----NATRIAFTGTPLLTERHGERKTHKRFGEYIDTYRLLDAVNDGATLQILYEGKTAD 513 Query: 659 RNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNY 718 E +Q + + L + + L A+ +L + Sbjct: 514 SALTEK---HAFDQAFEDLFRDRSEEELLAIKKKY--GATGDILEAENRINAIARDLVRH 568 Query: 719 LDPT---GSQKTLVFCVTNAHADMV--------VEELRAAFKKKYPQLEH-------DAI 760 K V C + E + K P + Sbjct: 569 YIDNILPNGFKAQVVCHSKLACIRYQAGIEAAIAERIEQEQVKTAPDADLLRRLRFLKTA 628 Query: 761 IKITGDADKDARKVQTM---------ITRF----------NKERLPNIVVTVDLLTTGVD 801 + ++ D +A + + F + ++ D+L TG D Sbjct: 629 VVVSSDGTNEAAFITQARKQAARMGAVENFCRGFDLDDPDKEYSGIAFLIVCDMLLTGFD 688 Query: 802 IPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVV 861 P + +K+R L Q R R+ + K + D + + + L T+ Sbjct: 689 APIEQVMYIDKKLREHTLL-QAIARTNRV--KKGKQRGYVVDYIGLANHLTDALTLYAAS 745 Query: 862 VRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKL---QRIIGLATFNRDRSE 918 LQ L + + + + + L + L+ D + Sbjct: 746 DE----LQELHDGMQNITSELPVLEERYQRLLQHFTALGVRSIGAFVTGTLSGLEADAAV 801 Query: 919 TIDKQVRRLDELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNL 978 + DE + V F + PH SA+ + + ++ + Sbjct: 802 VHEAVKALKDEKLRADFEVYLKKFLMSMDIILPHPSAQPYRVPAKRFGYILQVTKERYKD 861 Query: 979 -------NDAPIFLDIDDEVVSVK---SLYGDYDTPQDFLEAFDSLVQRSPNAQP----- 1023 + I+D ++S+ + +DFLE + ++ A+ Sbjct: 862 ASLDLSGAGEKVKALINDHLISLGINPKVEPVELLAEDFLEKLAAHSGKNVEAKASEMEH 921 Query: 1024 ALQAVINRPRDLTRKGLVELQEWFDRQHFEESSLRKAWKETRNEDIAARLIGHIR--RAA 1081 A++ D L E D + E E + + G + Sbjct: 922 AIRKHCTVHHDEDPAFFKSLSEKVDALIEKHQDEWDLLVEKLAELRSEAVAGRQKGEEGM 981 Query: 1082 VGDALKPFEERVDHALTRIKGENDWSSEQLSWLDRLAQALKEKVVLDDDVFKTGNFHRRG 1141 +A + + + + ++ L+E + F + Sbjct: 982 SKEATTFYAHIIQVGFAGGVVAGGDKDKFKALMEATVDLLQE--TIGSIDFWQNPDKQ-- 1037 Query: 1142 GKAMLQRTFDDNL-DTLLGKFSDY 1164 ++ + T + + Sbjct: 1038 --KRIRGLLKTEISKTGIDELKQN 1059 >UniRef50_Q0RV86 Type I site-specific modification system restriction subunit n=2 Tax=Actinomycetales RepID=Q0RV86_RHOSR Length = 1041 Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 135/919 (14%), Positives = 266/919 (28%), Gaps = 122/919 (13%) Query: 167 EVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQERKAYH 226 E+E +++ L+ + + + + + LA+ E + + A Sbjct: 11 EIEFEKEIAEYLHAHGWLYSRDDTGYDRERALFPEDVAGWLADTQPEQLDKVVKSGSADV 70 Query: 227 KEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGA--------RPEPGVN 278 + DQ + R + ++D L G + FS + RPE +N Sbjct: 71 AKQQDQLLDRIV--------KILDTPLENGGGTLNLLRKGFSHLSAKFQMCVFRPESTLN 122 Query: 279 KAIA---------EWPTGKDETGNQGFADYVLFVGLKPIAVVEAKRN-NIDVPARLNESY 328 T + D V FV P+A E K + V +++ Sbjct: 123 VKRNGEYAAVRLRVMRQVHFSTADNRSVDLVFFVNGLPVATAELKTDFTQTVTDAISQYR 182 Query: 329 RYSKCFDNGFLRETLLEHY--SPDEVHEAVPEYETSWQDTSGKQRFKIPFCYSTN----G 382 D + L + +G + +PF + G Sbjct: 183 TSRLPKDPATGKAQPLFVSGARALVHFALSNDEVWMTTKLAGDKTHFLPFNRGSEDGGAG 242 Query: 383 REYRATMKTKSGIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGMSE 442 S +W W L + E + + Sbjct: 243 NPLNPNGSRTSYLW--------EQVLQRDAWLNILGRLMYIKHESSTDPISGKTSKSSTL 294 Query: 443 LGLRYYQEDAVRAVEKAI-VKG-QQEILLAMATGTGKTRTAIAMMFRLIQ-----SQRFK 495 R++Q +AV + A+ +G + L+ + G+GKT + R+ + ++ F Sbjct: 295 RFPRFHQWEAVSELTAAVTAEGVGKRYLIQHSAGSGKTDSIAWTAHRMARLQVENTKVFD 354 Query: 496 RILFLVDRRSLGEQALGAFEDTRINGDTFNSIF---------DIKGLTDKFPEDSTKIHV 546 ++ + DR L Q A + + +I GL K D I V Sbjct: 355 SVIVVTDRNVLDAQLQDAIKQIDNDQGIVVAIDRDEAARAGGSKSGLLAKSLTDGKLIIV 414 Query: 547 ATVQSLVKRTLQ-SDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRR 605 T+Q+ + + ++ DEAH + +L + Sbjct: 415 VTIQTFPFAMEEIRKNKGLKGKTFAVIADEAHSSQSGQVASKLKAVLTAEELQDIEDGAD 474 Query: 606 I-------------LDHFDAVKIALTATPALHTVQIFGE---------PVYRYTYRTAVI 643 + + A TATP T+++FG P + YT + A+ Sbjct: 475 VDVEAVLAAEASERAASANISFFAFTATPKGKTLELFGRAPAAGGKPVPFHVYTMKQAIE 534 Query: 644 DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLV 703 +G+++D Q G + ++V++ EV+ + Q ++ Sbjct: 535 EGYILDVLTGYHSFKLAFQIGQNATSEDEVDQSQATKEVMRWVKLNPQTIAQK---AAII 591 Query: 704 IPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKI 763 + F V + L G K +V + A + KK Sbjct: 592 VEHFRANVAHLLD------GHAKAMVVTDSRKAAVRYKLAIDDFIAKKGYGYGTLVAFSG 645 Query: 764 TGDADKDARK----------VQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRK 813 + K V + T F +++ + TG D P +C + R Sbjct: 646 AVQDPESGPKDFTEATMNPGVHDLRTAF-TGDAYRVMIVANKFQTGFDQPLLCAMYVDR- 703 Query: 814 VRSRILYEQMKGRATRLCPEVN---KTSFK--IFDCVD----IYSTLESVDTMRPVVVRP 864 + S + Q R R + K++ + D V+ I E T + Sbjct: 704 ILSGVTAVQTLSRLNRTYRTPSGVLKSAAMTQVVDFVNEPTVIREAFEPYFTDAFLETET 763 Query: 865 KVEL-QTLVNEITDSETYKITEADGRS---FAEHSHEQLVAKLQRIIGLATFNRDRSETI 920 L L ++ + Y E D + H L A + + Sbjct: 764 DPNLVHDLAAKLDTAAIYAQAEVDQCAEGFVKGRGHSALAAAVDPGKKRFAERYQAALIH 823 Query: 921 DKQVRRLDELCQDAAGVN-------FNGFASRLREKG--PHWSAEVFNKLPGFIARLEKL 971 + L + F S++ + G +++ + + + + Sbjct: 824 NGGEGDKAALAELDMFRKDVGSFVRLYDFMSQIVDYGDPELEKKQIYLRHLDRVIQPDNY 883 Query: 972 KTDINNLNDAPIFLDIDDE 990 I+ + + D+ Sbjct: 884 TAPIDLSDVVLQRVKQVDQ 902 >UniRef50_C1FPX7 Type III restriction protein res subunit n=1 Tax=Clostridium botulinum A2 str. Kyoto RepID=C1FPX7_CLOBJ Length = 1002 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 136/1040 (13%), Positives = 303/1040 (29%), Gaps = 117/1040 (11%) Query: 161 KAQTQAEVEAQQQKLVALNGYIAILEGKQQETEAQTQARLAALEAQLAEKNAELAKQTEQ 220 + E ++ L ++G + + L + + + ++ Sbjct: 2 NEEELKEKAFEEAIEQYLITEGGYIKGNPKNFNRELALDNETLIEFIKKTQPKKWERYVT 61 Query: 221 ERKAYHKEITDQAIKRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPE----PG 276 + +E + + + + + ++ + G + D + + + Sbjct: 62 IYGSASEESFIKRFNKEVKTNGLLA--ILRRGFKDRGIKFDVVYFKPANTDNTDRVKLYN 119 Query: 277 VNKAIAEWPTGKDETGNQGFADYVLFVGLKPIAVVEAKR--NNIDVPARLNESYRYSKCF 334 N D VLF+ P+ +E K + +N+ Sbjct: 120 ENILHCTRQLHYSVFNEN-SIDIVLFLNGIPVVSMELKCQFTGQTIHNAINQYK------ 172 Query: 335 DNGFLRETLLEHYSPDEVHEAVPEYETSWQD-TSGKQRFKIPFCYSTNGREYRATMKTKS 393 + ++ + + + VH AV +E +G+ + +PF + Sbjct: 173 FDRASKDAIFDFRNRVLVHFAVDLFEVHMTTRLNGENTYFLPFNQG---SNGSGNVGGAG 229 Query: 394 GIWYRDVRDTRNMSKALPEWHRPEELLEMLGSEPQKQNQWFADNPGM------SELGLRY 447 T + + + + L+E+L + + D + + RY Sbjct: 230 NPLNPKGYQTAYLWEKV---LCKDRLMEILHKYMHLKKEDKKDADSKVISTEETLIFPRY 286 Query: 448 YQEDAVRAVEKAIVKGQ--QEILLAMATGTGKTRTAIAMMFRLI------QSQRFKRILF 499 +Q DAV + + + K + L+ + G+GK+ + + RL + +K I+ Sbjct: 287 HQLDAVTKLLEDVKKNGAGKNYLIQHSAGSGKSNSIAWLAHRLSGLHDDNNNPIYKSIIV 346 Query: 500 LVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFP--EDSTKIHVATVQSLVKRTL 557 + DRR L Q I K D +I + T+Q Sbjct: 347 VTDRRVLDSQLQDTIYQFDHVLGVVECIDKKKHAVDLRDAINAGKRIIITTLQKFPVIYK 406 Query: 558 QSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYR------------- 604 + + I+VDEAH + + + + D + YR Sbjct: 407 E----IQTDGNFAIIVDEAHSSQTGEASKKLKKAL-TNTDDILEEYRAMENEAEENVKDD 461 Query: 605 --RILDHF-------DAVKIALTATPALHTVQIFGE--------PVYRYTYRTAVIDGFL 647 ++LD + A TATP T+Q+FG+ + Y+ R A+ + F+ Sbjct: 462 EDKMLDELASHGRIDNLSFFAFTATPKEKTLQMFGDKQSDGTYRAFHIYSMRQAIEEHFI 521 Query: 648 IDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAF 707 +D + ++ V+ E+ + ++I F Sbjct: 522 LDVLKNYTTYKMYYKIAKKVADDPDVDVSKGAKEIARYESLHPHNLAQKT---DIMIEHF 578 Query: 708 NRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKK-YPQLEHDAIIKITGD 766 N++ G K ++ + HA + E R K+K Y L+ T + Sbjct: 579 RSITKNKI------GGRAKAMLVTASRLHAVRYLFEFRRYIKEKGYTDLDVLVAFSGTVN 632 Query: 767 ADK-----------------DARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPSICNIV 809 + K + F+ + N+++ + TG D P + + Sbjct: 633 DPDIPDTDFTEEGLNKDKQGNTIKEDQLKEEFHNDD-FNMLIVAEKYQTGFDEPLLHTMF 691 Query: 810 FLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVVRPKVELQ 869 +K+ S + Q R R K + D V+ ++ +P E Sbjct: 692 VDKKL-SGVKAVQTLSRLNRTM--KGKEDTFVLDFVNNAEDIQKA-------FQPYYEAT 741 Query: 870 TLVNEITDSETYKI-TEADGRSFAEHSHEQLVAKLQRIIGLATFNRDRSETIDKQVRRLD 928 L E + Y + D + + + A++ + I + R + Sbjct: 742 VLEQETDPNVIYDLKNGLDSFQIYQPTEVEHFAQIFYGKDNKDAQALLTGCIKPALDRYN 801 Query: 929 --ELCQDAAGVNFNGFASRLREKGPHWSAEVFNKLPGFIARLEKLKTDINNLNDAPIFLD 986 E + R+ + F L + + + D Sbjct: 802 VKEDKDREEFKSSLATFVRIYSFIIQVCRMYDKDMQKFFVYARFLGKCLPKGENEKV--D 859 Query: 987 IDDEVVSVKSLYGDYDTPQDFLEAFDSLVQRSPNAQPALQAVINRPRDLTRKGLVELQEW 1046 + D+++ + LE + V + + + K Sbjct: 860 LSDKLILEYYKLDKTFSGDIALEKTEGYVANIKGGIGGKEKKEDPLSVIIDKMNERFGTA 919 Query: 1047 F-DRQHFEESSLRKAWKETRNEDIAARLIGHIRRAAVGDALKPFEERVDHALTRIKGEND 1105 F ++ E K+ + + + + K + Sbjct: 920 FSEQDKVLEQMKSDFAKDEKIVNAVKSDDKSLFKYLYEQKFKDVAVNRYEENDKFFMSLF 979 Query: 1106 WSSEQLSWLDRLAQALKEKV 1125 E+++++ + + K Sbjct: 980 SDEEKMNFIMNMMAEVVYKE 999 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.125 0.334 Lambda K H 0.267 0.0386 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,421,511,122 Number of Sequences: 3077464 Number of extensions: 214836227 Number of successful extensions: 1004382 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2564 Number of HSP's successfully gapped in prelim test: 10595 Number of HSP's that attempted gapping in prelim test: 965511 Number of HSP's gapped (non-prelim): 29531 length of query: 1170 length of database: 1,040,396,356 effective HSP length: 140 effective length of query: 1030 effective length of database: 609,551,396 effective search space: 627837937880 effective search space used: 627837937880 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 99 (42.8 bits)