BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (76 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P39354 Putative uncharacterized protein yjhD n=7 Tax=Es... 162 2e-39 UniRef50_D0KEU6 Putative lipoprotein n=1 Tax=Pectobacterium wasa... 76 4e-13 UniRef50_C7BND0 Putative uncharacterized protein n=1 Tax=Photorh... 66 3e-10 UniRef50_A4W937 Lipoprotein, putative n=3 Tax=Enterobacteriaceae... 65 1e-09 UniRef50_Q4KDA7 Lipoprotein, putative n=1 Tax=Pseudomonas fluore... 45 8e-04 >UniRef50_P39354 Putative uncharacterized protein yjhD n=7 Tax=Escherichia coli RepID=YJHD_ECOLI Length = 76 Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 76/76 (100%), Positives = 76/76 (100%) Query: 1 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK 60 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK Sbjct: 1 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK 60 Query: 61 PEPPRDPHIPLMGDFN 76 PEPPRDPHIPLMGDFN Sbjct: 61 PEPPRDPHIPLMGDFN 76 >UniRef50_D0KEU6 Putative lipoprotein n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KEU6_PECWW Length = 164 Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 34/73 (46%), Positives = 49/73 (67%) Query: 1 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK 60 +NC++ +R FE +YFSQ +A GD IA IGQWE + +ES++G+I VC+I LK Sbjct: 92 INCDSLERAVFERVYFSQPYALGDVIAIVDEIGQWEAFHKESMMGLIAGMVCQIAPERLK 151 Query: 61 PEPPRDPHIPLMG 73 PE P++ PL+G Sbjct: 152 PELPKETRTPLLG 164 >UniRef50_C7BND0 Putative uncharacterized protein n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BND0_PHOAA Length = 160 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%) Query: 1 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK 60 +NC+ + FE +FS+ +AKG IA+R +GQW +SE+S++ +I VCRI A LK Sbjct: 88 VNCDRMETAAFELTFFSEPFAKGLVIARRDEVGQWRTFSEKSIMEMIRGLVCRIDPARLK 147 Query: 61 PEPPRDPHIPLM 72 P +D PL+ Sbjct: 148 PALSKDTQTPLL 159 >UniRef50_A4W937 Lipoprotein, putative n=3 Tax=Enterobacteriaceae RepID=A4W937_ENT38 Length = 164 Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 43/72 (59%) Query: 1 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK 60 +NC+ QR FS+ +A+GD + +GQWE Y ++SL GII S+C I V LK Sbjct: 92 INCDKNQRAVMGRSLFSKPFAEGDLVHAGLDVGQWETYPKDSLFGIIAESMCSIPVEKLK 151 Query: 61 PEPPRDPHIPLM 72 PEP ++ PL+ Sbjct: 152 PEPAKENRKPLL 163 >UniRef50_Q4KDA7 Lipoprotein, putative n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KDA7_PSEF5 Length = 158 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 1 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK 60 +NCE + QF +YFS+ +A+G + ++ + QW + +SL+G + C + LK Sbjct: 92 INCEKDESAQFGRVYFSEPFAQGVEVMRKDDLAQWAAFPRQSLIGELRNMACAVDPTRLK 151 Query: 61 --PEPPR 65 P P R Sbjct: 152 LAPAPSR 158 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D0KEU6 Putative lipoprotein n=1 Tax=Pectobacterium wasa... 130 1e-29 UniRef50_P39354 Putative uncharacterized protein yjhD n=7 Tax=Es... 129 2e-29 UniRef50_C7BND0 Putative uncharacterized protein n=1 Tax=Photorh... 124 1e-27 UniRef50_A4W937 Lipoprotein, putative n=3 Tax=Enterobacteriaceae... 122 5e-27 UniRef50_Q4KDA7 Lipoprotein, putative n=1 Tax=Pseudomonas fluore... 103 2e-21 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_D0KEU6 Putative lipoprotein n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KEU6_PECWW Length = 164 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 34/73 (46%), Positives = 49/73 (67%) Query: 1 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK 60 +NC++ +R FE +YFSQ +A GD IA IGQWE + +ES++G+I VC+I LK Sbjct: 92 INCDSLERAVFERVYFSQPYALGDVIAIVDEIGQWEAFHKESMMGLIAGMVCQIAPERLK 151 Query: 61 PEPPRDPHIPLMG 73 PE P++ PL+G Sbjct: 152 PELPKETRTPLLG 164 >UniRef50_P39354 Putative uncharacterized protein yjhD n=7 Tax=Escherichia coli RepID=YJHD_ECOLI Length = 76 Score = 129 bits (325), Expect = 2e-29, Method: Composition-based stats. Identities = 76/76 (100%), Positives = 76/76 (100%) Query: 1 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK 60 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK Sbjct: 1 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK 60 Query: 61 PEPPRDPHIPLMGDFN 76 PEPPRDPHIPLMGDFN Sbjct: 61 PEPPRDPHIPLMGDFN 76 >UniRef50_C7BND0 Putative uncharacterized protein n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BND0_PHOAA Length = 160 Score = 124 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 45/72 (62%) Query: 1 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK 60 +NC+ + FE +FS+ +AKG IA+R +GQW +SE+S++ +I VCRI A LK Sbjct: 88 VNCDRMETAAFELTFFSEPFAKGLVIARRDEVGQWRTFSEKSIMEMIRGLVCRIDPARLK 147 Query: 61 PEPPRDPHIPLM 72 P +D PL+ Sbjct: 148 PALSKDTQTPLL 159 >UniRef50_A4W937 Lipoprotein, putative n=3 Tax=Enterobacteriaceae RepID=A4W937_ENT38 Length = 164 Score = 122 bits (305), Expect = 5e-27, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 43/72 (59%) Query: 1 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK 60 +NC+ QR FS+ +A+GD + +GQWE Y ++SL GII S+C I V LK Sbjct: 92 INCDKNQRAVMGRSLFSKPFAEGDLVHAGLDVGQWETYPKDSLFGIIAESMCSIPVEKLK 151 Query: 61 PEPPRDPHIPLM 72 PEP ++ PL+ Sbjct: 152 PEPAKENRKPLL 163 >UniRef50_Q4KDA7 Lipoprotein, putative n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KDA7_PSEF5 Length = 158 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 1 MNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLK 60 +NCE + QF +YFS+ +A+G + ++ + QW + +SL+G + C + LK Sbjct: 92 INCEKDESAQFGRVYFSEPFAQGVEVMRKDDLAQWAAFPRQSLIGELRNMACAVDPTRLK 151 Query: 61 --PEPPR 65 P P R Sbjct: 152 LAPAPSR 158 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.133 0.388 Lambda K H 0.267 0.0414 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 317,496,743 Number of Sequences: 3077464 Number of extensions: 9774031 Number of successful extensions: 21453 Number of sequences better than 1.0e-01: 5 Number of HSP's better than 0.1 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21443 Number of HSP's gapped (non-prelim): 10 length of query: 76 length of database: 1,040,396,356 effective HSP length: 47 effective length of query: 29 effective length of database: 895,755,548 effective search space: 25976910892 effective search space used: 25976910892 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 87 (38.1 bits)