BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (92 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ACH3 Sugar fermentation stimulation protein B n=66 Ta... 192 3e-48 UniRef50_B7LR55 DNA-binding transcriptional activator of maltose... 167 1e-40 UniRef50_C4X0G5 Regulatory factor of maltose metabolism n=5 Tax=... 153 2e-36 UniRef50_Q6D9D0 Sugar fermentation stimulation protein n=16 Tax=... 115 3e-25 UniRef50_C5BF99 Sugar fermentation stimulation protein n=30 Tax=... 108 4e-23 UniRef50_B4ETI1 Phage protein n=47 Tax=Gammaproteobacteria RepID... 99 5e-20 UniRef50_Q322I2 Transcriptional regulatory protein n=8 Tax=Gamma... 97 1e-19 UniRef50_A4TP35 DNA-binding protein n=23 Tax=Yersinia RepID=A4TP... 96 3e-19 UniRef50_D0FNK4 Sugar fermentation stimulation protein B n=2 Tax... 94 9e-19 UniRef50_C7BNF2 Sugar fermentation stimulation protein b (Ner-li... 94 1e-18 UniRef50_Q9RG38 Pln n=4 Tax=Enterobacteriaceae RepID=Q9RG38_PHOLU 90 2e-17 UniRef50_UPI00019F1682 hypothetical protein CATC2_16475 n=1 Tax=... 89 6e-17 UniRef50_P06020 DNA-binding protein Ner n=7 Tax=root RepID=NER_BPMU 86 4e-16 UniRef50_C9R6S3 Possible DNA-binding protein n=6 Tax=Proteobacte... 73 2e-12 UniRef50_UPI000196E47E sugar fermentation stimulation protein n=... 72 5e-12 UniRef50_A1IT90 Ner-like DNA-binding protein n=4 Tax=Neisseriace... 71 9e-12 UniRef50_D2NHS6 Phage DNA-binding protein n=5 Tax=Enterobacteria... 70 2e-11 UniRef50_C0DX46 Putative uncharacterized protein n=1 Tax=Eikenel... 68 8e-11 UniRef50_A9ICZ3 Mu-like prophage FluMu DNA-binding protein Ner n... 66 3e-10 UniRef50_B7UGE4 Predicted DNA-binding protein n=4 Tax=Gammaprote... 64 2e-09 UniRef50_Q12EU1 Putative transcriptional regulator, Nlp n=1 Tax=... 62 6e-09 UniRef50_B8FGN9 Putative transcriptional regulator, Nlp n=1 Tax=... 62 7e-09 UniRef50_D2TQ31 Prophage transcriptional regulator Ner n=1 Tax=C... 61 9e-09 UniRef50_B6ISR8 Phage DNA-binding protein Ner, putative n=1 Tax=... 60 3e-08 UniRef50_C6E6U5 Putative transcriptional regulator, Nlp n=1 Tax=... 59 3e-08 UniRef50_P46496 Mu-like prophage FluMu DNA-binding protein Ner n... 58 1e-07 UniRef50_Q0EWA6 Putative uncharacterized protein n=1 Tax=Maripro... 57 2e-07 UniRef50_A4NLS5 Ner-like DNA-binding protein n=2 Tax=Pasteurella... 55 6e-07 UniRef50_A1TUL9 Putative transcriptional regulator, Nlp n=1 Tax=... 52 4e-06 UniRef50_C6P2C1 Putative transcriptional regulator, Nlp n=1 Tax=... 52 6e-06 UniRef50_A7IP05 Putative transcriptional regulator, Nlp n=1 Tax=... 52 6e-06 UniRef50_Q8X345 Putative DNA-binding protein n=1 Tax=Escherichia... 48 1e-04 UniRef50_B7UXK3 Ner-like protein n=5 Tax=root RepID=B7UXK3_PSEA8 47 2e-04 UniRef50_A9D2T0 Putative uncharacterized protein n=1 Tax=Hoeflea... 45 8e-04 UniRef50_A0PBQ2 Ner-like protein n=9 Tax=Gammaproteobacteria Rep... 44 0.001 UniRef50_B3QCI8 Putative transcriptional regulator, Nlp n=1 Tax=... 44 0.001 UniRef50_A9HP45 Putative sugar fermentation stimulation protein ... 44 0.002 UniRef50_B9JYW2 Putative uncharacterized protein n=3 Tax=Rhizobi... 40 0.020 >UniRef50_P0ACH3 Sugar fermentation stimulation protein B n=66 Tax=Enterobacteriaceae RepID=SFSB_ECO57 Length = 92 Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 92/92 (100%), Positives = 92/92 (100%) Query: 1 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD 60 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD Sbjct: 1 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD 60 Query: 61 PWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK 92 PWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK Sbjct: 61 PWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK 92 >UniRef50_B7LR55 DNA-binding transcriptional activator of maltose metabolism n=107 Tax=Gammaproteobacteria RepID=B7LR55_ESCF3 Length = 107 Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 79/86 (91%), Positives = 83/86 (96%) Query: 1 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD 60 ME+ IDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANAL+RPWPKGE IIAKALGT+ Sbjct: 15 MENKLIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALTRPWPKGEWIIAKALGTE 74 Query: 61 PWVIWPSRYHDPQTHEFIDRTQLMRS 86 PWVIWPSRYHDPQTHEFIDRT+LMRS Sbjct: 75 PWVIWPSRYHDPQTHEFIDRTRLMRS 100 >UniRef50_C4X0G5 Regulatory factor of maltose metabolism n=5 Tax=Klebsiella RepID=C4X0G5_KLEPN Length = 118 Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 70/82 (85%), Positives = 77/82 (93%) Query: 4 NFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWV 63 FIDWHPADI+AGLRK+GTS+AAESRR+GLSSSTLANAL+RPWPKGE+IIA AL T PWV Sbjct: 31 KFIDWHPADIVAGLRKRGTSLAAESRRHGLSSSTLANALTRPWPKGELIIATALETQPWV 90 Query: 64 IWPSRYHDPQTHEFIDRTQLMR 85 IWPSRYHDP THEFIDRTQ+MR Sbjct: 91 IWPSRYHDPVTHEFIDRTQMMR 112 >UniRef50_Q6D9D0 Sugar fermentation stimulation protein n=16 Tax=Enterobacteriaceae RepID=Q6D9D0_ERWCT Length = 87 Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 56/79 (70%), Positives = 65/79 (82%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHPADIIA LRKK T++AA SR GLSSSTLANALSRPWPKGE +IA AL P IWP Sbjct: 7 DWHPADIIAALRKKNTTLAAVSRAAGLSSSTLANALSRPWPKGEWLIADALSIHPSEIWP 66 Query: 67 SRYHDPQTHEFIDRTQLMR 85 SRY++P+T+E IDR +L+R Sbjct: 67 SRYYNPETNELIDRKKLIR 85 >UniRef50_C5BF99 Sugar fermentation stimulation protein n=30 Tax=Enterobacteriaceae RepID=C5BF99_EDWI9 Length = 94 Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 52/86 (60%), Positives = 64/86 (74%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHPA+IIA L K+ ++ SR GLSSSTLANAL+RPWPKGE +IA+AL P IWP Sbjct: 8 DWHPAEIIAALHKRRLTLTQVSRNAGLSSSTLANALTRPWPKGEWLIAEALSIHPSEIWP 67 Query: 67 SRYHDPQTHEFIDRTQLMRSYTKPKK 92 SRY+DP THE +DR +L+R+ KK Sbjct: 68 SRYYDPITHELLDRKRLIRNVASVKK 93 >UniRef50_B4ETI1 Phage protein n=47 Tax=Gammaproteobacteria RepID=B4ETI1_PROMH Length = 90 Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 47/72 (65%), Positives = 55/72 (76%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 +WHPADIIA L+KKGT++A SR GLSSSTL+NALSRPWPKGE IIAK L P IWP Sbjct: 5 NWHPADIIASLKKKGTTLAEVSRAAGLSSSTLSNALSRPWPKGEQIIAKELDIPPSTIWP 64 Query: 67 SRYHDPQTHEFI 78 RY D + ++ I Sbjct: 65 ERYFDEKGNQII 76 >UniRef50_Q322I2 Transcriptional regulatory protein n=8 Tax=Gammaproteobacteria RepID=Q322I2_SHIBS Length = 68 Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 46/64 (71%), Positives = 55/64 (85%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHPADIIAGL+K+GTS++A SR+ GL+SSTLANAL+R WPKGE +IA+ALG P IWP Sbjct: 5 DWHPADIIAGLKKRGTSLSALSRQAGLASSTLANALTRRWPKGERLIAEALGIKPEQIWP 64 Query: 67 SRYH 70 SRY Sbjct: 65 SRYR 68 >UniRef50_A4TP35 DNA-binding protein n=23 Tax=Yersinia RepID=A4TP35_YERPP Length = 81 Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 45/67 (67%), Positives = 55/67 (82%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHPADI+AGL+K+GT+MAA SR++GL+SSTLAN L RPWPKGE +IA+ L P IWP Sbjct: 5 DWHPADILAGLKKRGTTMAALSRKSGLASSTLANTLLRPWPKGERLIAEVLELHPAEIWP 64 Query: 67 SRYHDPQ 73 SRY P+ Sbjct: 65 SRYLKPK 71 >UniRef50_D0FNK4 Sugar fermentation stimulation protein B n=2 Tax=Erwinia pyrifoliae RepID=D0FNK4_ERWPY Length = 109 Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 44/65 (67%), Positives = 51/65 (78%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 D HPADI+A +K+ TS+AA SR+ GL+S TLANAL RPWPKGE IIA ALG P IWP Sbjct: 6 DMHPADILAAFKKRQTSLAALSRQAGLNSGTLANALKRPWPKGEFIIAAALGVHPSAIWP 65 Query: 67 SRYHD 71 SRY+D Sbjct: 66 SRYYD 70 >UniRef50_C7BNF2 Sugar fermentation stimulation protein b (Ner-like protein) n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BNF2_PHOAA Length = 109 Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/64 (67%), Positives = 51/64 (79%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHPADIIA L+K+GT+++A SR+ GL+SSTL+NAL R WPKGE IIA LG P IWP Sbjct: 5 DWHPADIIAALKKQGTTLSAVSRKAGLASSTLSNALHRQWPKGEAIIATKLGLSPSEIWP 64 Query: 67 SRYH 70 SRY Sbjct: 65 SRYQ 68 >UniRef50_Q9RG38 Pln n=4 Tax=Enterobacteriaceae RepID=Q9RG38_PHOLU Length = 70 Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 43/63 (68%), Positives = 49/63 (77%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWH ADIIA L+K+GTS+AA SR GL+SSTL+N L RPWPKGE IIA L +P IWP Sbjct: 6 DWHKADIIAALKKRGTSLAAVSREAGLASSTLSNVLHRPWPKGERIIATILNCEPSEIWP 65 Query: 67 SRY 69 SRY Sbjct: 66 SRY 68 >UniRef50_UPI00019F1682 hypothetical protein CATC2_16475 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI00019F1682 Length = 98 Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 43/63 (68%), Positives = 50/63 (79%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHPA IIA L K+GTS+AA SR+ GL+SSTLANAL+RP PKGE +IA AL P IWP Sbjct: 5 DWHPAYIIAALHKRGTSLAALSRQAGLASSTLANALTRPCPKGEWLIASALKVHPATIWP 64 Query: 67 SRY 69 +RY Sbjct: 65 TRY 67 >UniRef50_P06020 DNA-binding protein Ner n=7 Tax=root RepID=NER_BPMU Length = 75 Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 41/64 (64%), Positives = 49/64 (76%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWH AD+IAGL+K+ S++A SR+ G + +TLANAL R WPKGE IIA AL T P VIWP Sbjct: 9 DWHRADVIAGLKKRKLSLSALSRQFGYAPTTLANALERHWPKGEQIIANALETKPEVIWP 68 Query: 67 SRYH 70 SRY Sbjct: 69 SRYQ 72 >UniRef50_C9R6S3 Possible DNA-binding protein n=6 Tax=Proteobacteria RepID=C9R6S3_AGGAD Length = 83 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 6 IDWHPADIIAGLRKKGTSMAAESRRNGLSS-STLANALSRPWPKGEMIIAKALGTDPWVI 64 IDWH DI A L KKG S+ S ++G S+ STL NAL RPW KGE IIA+A+G VI Sbjct: 8 IDWHREDIKAALAKKGWSLRQLSLKHGYSNGSTLKNALDRPWLKGERIIAEAIGVPAEVI 67 Query: 65 WPSRYHDPQTHEFIDR 80 W SRY ++ DR Sbjct: 68 WASRYEQRNLKKYADR 83 >UniRef50_UPI000196E47E sugar fermentation stimulation protein n=1 Tax=Neisseria mucosa ATCC 25996 RepID=UPI000196E47E Length = 87 Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 47/68 (69%) Query: 2 ESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDP 61 ES DWH A+I+A +RK+G ++ A S +GLS++TL +AL +PKGE II+ LG P Sbjct: 16 ESRKQDWHRAEIVAAVRKRGKTITALSIESGLSANTLKSALQFKYPKGERIISDFLGVPP 75 Query: 62 WVIWPSRY 69 IWPSRY Sbjct: 76 QEIWPSRY 83 >UniRef50_A1IT90 Ner-like DNA-binding protein n=4 Tax=Neisseriaceae RepID=A1IT90_NEIMA Length = 87 Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 36/65 (55%), Positives = 46/65 (70%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 +WH ADI+A L+KKG S+ A S GLS +TL +AL+ P+ KGE IIA A+G +P IWP Sbjct: 9 NWHRADIVAALKKKGWSLRALSIEAGLSPNTLRSALAAPYLKGERIIAAAIGVEPEEIWP 68 Query: 67 SRYHD 71 RY D Sbjct: 69 ERYAD 73 >UniRef50_D2NHS6 Phage DNA-binding protein n=5 Tax=Enterobacteriaceae RepID=D2NHS6_ECOLX Length = 89 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/63 (52%), Positives = 43/63 (68%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 +WH ADI+A L K+G ++A SR +GL+ TL NAL R +P+ E IIA AL T P +WP Sbjct: 18 NWHRADIVAALHKRGLTLALLSRSHGLAPRTLNNALERHYPRAERIIAGALDTTPETLWP 77 Query: 67 SRY 69 RY Sbjct: 78 ERY 80 >UniRef50_C0DX46 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DX46_EIKCO Length = 92 Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 46/77 (59%) Query: 5 FIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVI 64 +DWH ADIIA L+K+G S+ A + + + +TL AL +P+PK E +IA ALG P I Sbjct: 13 LLDWHRADIIAALKKRGWSIRALAAQANVHPTTLYGALIKPYPKSERVIADALGMKPEQI 72 Query: 65 WPSRYHDPQTHEFIDRT 81 WP RY + RT Sbjct: 73 WPQRYAARNFQPVLRRT 89 >UniRef50_A9ICZ3 Mu-like prophage FluMu DNA-binding protein Ner n=5 Tax=Proteobacteria RepID=A9ICZ3_BORPD Length = 100 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/64 (56%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSS-STLANALSRPWPKGEMIIAKALGTDPWVIW 65 DWH ADI A L K G S+ ++ +G SS +TL L RPWPKGE IIA A+G P IW Sbjct: 14 DWHRADIKAALEKAGWSLRRLAKHHGYSSPTTLTIPLMRPWPKGERIIASAIGRSPAEIW 73 Query: 66 PSRY 69 PSRY Sbjct: 74 PSRY 77 >UniRef50_B7UGE4 Predicted DNA-binding protein n=4 Tax=Gammaproteobacteria RepID=B7UGE4_ECO27 Length = 78 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 38/63 (60%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWH I+A + KG ++ S R GL +L NAL R PK E IIA A+G +P IWP Sbjct: 11 DWHREYIVAAVHTKGFTLRELSERAGLKKDSLKNALYRSCPKYERIIADAIGVEPAEIWP 70 Query: 67 SRY 69 SRY Sbjct: 71 SRY 73 >UniRef50_Q12EU1 Putative transcriptional regulator, Nlp n=1 Tax=Polaromonas sp. JS666 RepID=Q12EU1_POLSJ Length = 125 Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 2/66 (3%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 D HPAD+IA L K+GTS+ + NG S + L+ PW E ++AKAL P +WP Sbjct: 14 DMHPADVIAALHKRGTSLRKIALENGYSH--IQRVLTSPWLAAEQLVAKALDAKPEDLWP 71 Query: 67 SRYHDP 72 SRY +P Sbjct: 72 SRYLNP 77 >UniRef50_B8FGN9 Putative transcriptional regulator, Nlp n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGN9_DESAA Length = 90 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 40/65 (61%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DW+P DI A L K G ++A R+ GL+ T N +P+P+ E IA+ LGT P IWP Sbjct: 15 DWNPWDIKAALGKAGYTLADIGRQEGLAPRTANNVFRKPYPRIERAIAEVLGTVPQAIWP 74 Query: 67 SRYHD 71 +RY D Sbjct: 75 TRYDD 79 >UniRef50_D2TQ31 Prophage transcriptional regulator Ner n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TQ31_CITRO Length = 76 Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 39/63 (61%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHP I+ +R + SM A +R+ G+ + L NA+ R PK E IIA+ LG P IWP Sbjct: 9 DWHPQRILGEVRAREGSMRALARKAGVGQNNLYNAVYRHVPKYEGIIAECLGVPPEEIWP 68 Query: 67 SRY 69 SRY Sbjct: 69 SRY 71 >UniRef50_B6ISR8 Phage DNA-binding protein Ner, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ISR8_RHOCS Length = 107 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 38/63 (60%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 WH DI A +RK+GT++ + NGL SST AL+ P GE +IA+ LG V+WP Sbjct: 14 WHKEDIKAAIRKRGTTVTDLALSNGLGSSTCRVALNTPCFTGEQVIAEFLGVPAQVLWPD 73 Query: 68 RYH 70 RY Sbjct: 74 RYE 76 >UniRef50_C6E6U5 Putative transcriptional regulator, Nlp n=1 Tax=Geobacter sp. M21 RepID=C6E6U5_GEOSM Length = 103 Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 36/63 (57%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHPADI A L K G S A +R NG ++ L R W + E ++AK LG IWP Sbjct: 12 DWHPADIKAALDKAGYSFARIARENGYRLNSPNVVLHRAWSQVEQLVAKILGVQASEIWP 71 Query: 67 SRY 69 SRY Sbjct: 72 SRY 74 >UniRef50_P46496 Mu-like prophage FluMu DNA-binding protein Ner n=7 Tax=Pasteurellaceae RepID=NER_HAEIN Length = 89 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 41/65 (63%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWH ADI+A L+K G S+ + ++ +S +TL L + +PK E ++A A+G P VIW Sbjct: 14 DWHRADILAELKKNGWSLRSLAKEGQVSYNTLKTVLDKSYPKMERLVANAIGVPPEVIWA 73 Query: 67 SRYHD 71 R+ + Sbjct: 74 GRFAE 78 >UniRef50_Q0EWA6 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWA6_9PROT Length = 106 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 35/64 (54%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 WH DI A LRK+G + S +G + + L WPK E IIA L +PW IWP Sbjct: 13 WHREDIKAELRKRGWPLVRVSTEHGYARKSAQATLGHSWPKMERIIANILEVEPWEIWPH 72 Query: 68 RYHD 71 RY+D Sbjct: 73 RYND 76 >UniRef50_A4NLS5 Ner-like DNA-binding protein n=2 Tax=Pasteurellaceae RepID=A4NLS5_HAEIN Length = 78 Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DW I+ L ++ ++ + S + GL+ STL NAL +PKGE IIA+A+G + IW Sbjct: 5 DWSRKRIVYELHERNITLHSLSVKAGLAPSTLKNALRVSYPKGEKIIAEAIGVEASEIWV 64 Query: 67 SRYHDPQTHEFIDRT 81 +RY + + +DRT Sbjct: 65 TRY-AKRENRHVDRT 78 >UniRef50_A1TUL9 Putative transcriptional regulator, Nlp n=1 Tax=Acidovorax citrulli AAC00-1 RepID=A1TUL9_ACIAC Length = 90 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHPAD+ A L K+G S+ ++ +G S L+ W E I+A ALG IWP Sbjct: 13 DWHPADVKAALEKRGVSLRKLAKTHGYSH--FQRVLTTHWWAAEQIVAAALGLRAEEIWP 70 Query: 67 SRY 69 SRY Sbjct: 71 SRY 73 >UniRef50_C6P2C1 Putative transcriptional regulator, Nlp n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P2C1_9PROT Length = 114 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRP-WPKGEMIIAKALGTDPWVIW 65 DWHPADI A L K G ++A+ + G+ SS+ ++ +P E IA A+G P VIW Sbjct: 13 DWHPADIKAALHKNGITLASIAEVYGMRSSSSLSSTFTRSYPLNEKRIADAIGVHPMVIW 72 Query: 66 PSRYH 70 PSRY+ Sbjct: 73 PSRYN 77 >UniRef50_A7IP05 Putative transcriptional regulator, Nlp n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7IP05_XANP2 Length = 112 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHP +I + +RK+G+++ SR GL +AL P +GE IA+ L P IWP Sbjct: 19 DWHPEEIKSAVRKRGSTLYDLSRDAGLPEHACRSALRGPNFEGEFAIAEFLSLSPREIWP 78 Query: 67 SRY 69 SR+ Sbjct: 79 SRF 81 >UniRef50_Q8X345 Putative DNA-binding protein n=1 Tax=Escherichia coli O157:H7 RepID=Q8X345_ECO57 Length = 82 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 33/64 (51%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DW P I A L G S+ + S + G S +L + L P + IIA ALG P IWP Sbjct: 10 DWPPEIIKARLHMAGLSLRSLSLKAGYSRDSLKSVLRTPCRPYQQIIADALGVSPEEIWP 69 Query: 67 SRYH 70 SRY Sbjct: 70 SRYQ 73 >UniRef50_B7UXK3 Ner-like protein n=5 Tax=root RepID=B7UXK3_PSEA8 Length = 118 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 17 LRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYHDPQT-- 74 LR +G+S+A +R +SS + NA P+P+ E IA L P V+WP R+ D + Sbjct: 21 LRTRGSSLAEVARSLNVSSPAVKNAKLTPYPRVERAIAAVLNLSPLVLWPERWLDEENPK 80 Query: 75 HEFIDRTQLMRSYTK 89 + +R++ +++Y + Sbjct: 81 RQRPNRSETLQAYVR 95 >UniRef50_A9D2T0 Putative uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D2T0_9RHIZ Length = 101 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%) Query: 13 IIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYH 70 I A L + G ++A R LS+ T N + P +GE IA ALGT P ++WP+RY Sbjct: 18 IKAKLLEAGLTLAEIDRIYQLSNGTARNTMREPNARGERAIAAALGTRPHLLWPTRYR 75 >UniRef50_A0PBQ2 Ner-like protein n=9 Tax=Gammaproteobacteria RepID=A0PBQ2_PASPI Length = 90 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 17 LRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYHD 71 L+ +G S+AA R++ S ++ AL +P P E IA ALG P IWP RY + Sbjct: 24 LKIQGLSLAALGRKHKTSRQVVSTALYKPSPCWEHEIATALGVKPSEIWPERYDE 78 >UniRef50_B3QCI8 Putative transcriptional regulator, Nlp n=1 Tax=Rhodopseudomonas palustris TIE-1 RepID=B3QCI8_RHOPT Length = 99 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 W I A + +KG ++ +R+ GL S AL R +GE IA+ALG P +WP Sbjct: 5 WDRHAIKAAVHRKGLTLVGIARKAGLEESACKVALRRRNWRGEAAIAEALGLHPSALWPD 64 Query: 68 RY 69 RY Sbjct: 65 RY 66 >UniRef50_A9HP45 Putative sugar fermentation stimulation protein B n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HP45_GLUDA Length = 103 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPW--PKGEMIIAKALGTDPWVIW 65 H DI A LRK+ S+A+ SR+ GL+ + L A+ +P + E IA+ LG P ++ Sbjct: 10 MHVEDIKAELRKRYGSLASISRQLGLNPNALTAAIHKPGNSVRSERRIAELLGKAPHEVF 69 Query: 66 PSRYHDPQT--HEFIDRTQLMR 85 P R+H T +DR R Sbjct: 70 PDRFHKDGTPISRVVDRKPTCR 91 >UniRef50_B9JYW2 Putative uncharacterized protein n=3 Tax=Rhizobium/Agrobacterium group RepID=B9JYW2_AGRVS Length = 112 Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 29/58 (50%) Query: 13 IIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYH 70 I A L G ++ A R GL T N L + GE IA AL T P ++W SRYH Sbjct: 21 IKARLNVAGLTLLAIDREYGLPRGTAGNTLQQANLAGERAIAAALKTRPHLLWRSRYH 78 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACH3 Sugar fermentation stimulation protein B n=66 Ta... 150 1e-35 UniRef50_B7LR55 DNA-binding transcriptional activator of maltose... 140 1e-32 UniRef50_C4X0G5 Regulatory factor of maltose metabolism n=5 Tax=... 138 4e-32 UniRef50_C5BF99 Sugar fermentation stimulation protein n=30 Tax=... 129 3e-29 UniRef50_Q6D9D0 Sugar fermentation stimulation protein n=16 Tax=... 125 4e-28 UniRef50_B4ETI1 Phage protein n=47 Tax=Gammaproteobacteria RepID... 112 3e-24 UniRef50_UPI00019F1682 hypothetical protein CATC2_16475 n=1 Tax=... 111 5e-24 UniRef50_A4TP35 DNA-binding protein n=23 Tax=Yersinia RepID=A4TP... 110 1e-23 UniRef50_C0DX46 Putative uncharacterized protein n=1 Tax=Eikenel... 109 2e-23 UniRef50_Q322I2 Transcriptional regulatory protein n=8 Tax=Gamma... 109 2e-23 UniRef50_C7BNF2 Sugar fermentation stimulation protein b (Ner-li... 109 3e-23 UniRef50_D0FNK4 Sugar fermentation stimulation protein B n=2 Tax... 108 4e-23 UniRef50_Q9RG38 Pln n=4 Tax=Enterobacteriaceae RepID=Q9RG38_PHOLU 108 5e-23 UniRef50_C9R6S3 Possible DNA-binding protein n=6 Tax=Proteobacte... 108 7e-23 UniRef50_A1IT90 Ner-like DNA-binding protein n=4 Tax=Neisseriace... 107 1e-22 UniRef50_UPI000196E47E sugar fermentation stimulation protein n=... 104 9e-22 UniRef50_P06020 DNA-binding protein Ner n=7 Tax=root RepID=NER_BPMU 103 2e-21 UniRef50_B7UGE4 Predicted DNA-binding protein n=4 Tax=Gammaprote... 100 2e-20 UniRef50_B8FGN9 Putative transcriptional regulator, Nlp n=1 Tax=... 99 3e-20 UniRef50_B6ISR8 Phage DNA-binding protein Ner, putative n=1 Tax=... 98 6e-20 UniRef50_D2NHS6 Phage DNA-binding protein n=5 Tax=Enterobacteria... 98 6e-20 UniRef50_P46496 Mu-like prophage FluMu DNA-binding protein Ner n... 98 9e-20 UniRef50_A9ICZ3 Mu-like prophage FluMu DNA-binding protein Ner n... 97 2e-19 UniRef50_Q0EWA6 Putative uncharacterized protein n=1 Tax=Maripro... 94 1e-18 UniRef50_C6E6U5 Putative transcriptional regulator, Nlp n=1 Tax=... 94 2e-18 UniRef50_A4NLS5 Ner-like DNA-binding protein n=2 Tax=Pasteurella... 92 7e-18 UniRef50_D2TQ31 Prophage transcriptional regulator Ner n=1 Tax=C... 92 7e-18 UniRef50_Q8X345 Putative DNA-binding protein n=1 Tax=Escherichia... 91 9e-18 UniRef50_A9HP45 Putative sugar fermentation stimulation protein ... 91 1e-17 UniRef50_Q12EU1 Putative transcriptional regulator, Nlp n=1 Tax=... 90 2e-17 UniRef50_A7IP05 Putative transcriptional regulator, Nlp n=1 Tax=... 89 4e-17 UniRef50_A1TUL9 Putative transcriptional regulator, Nlp n=1 Tax=... 88 7e-17 UniRef50_C6P2C1 Putative transcriptional regulator, Nlp n=1 Tax=... 86 3e-16 UniRef50_B3QCI8 Putative transcriptional regulator, Nlp n=1 Tax=... 81 1e-14 UniRef50_B7UXK3 Ner-like protein n=5 Tax=root RepID=B7UXK3_PSEA8 79 3e-14 UniRef50_A0PBQ2 Ner-like protein n=9 Tax=Gammaproteobacteria Rep... 77 1e-13 UniRef50_A9D2T0 Putative uncharacterized protein n=1 Tax=Hoeflea... 70 2e-11 Sequences not found previously or not previously below threshold: UniRef50_B2NA08 Putative DNA-binding protein Ner n=3 Tax=Enterob... 76 4e-13 UniRef50_A8I7I4 Putative transcriptional regulator n=1 Tax=Azorh... 73 3e-12 UniRef50_A9IV17 Putative uncharacterized protein n=2 Tax=Bartone... 68 1e-10 UniRef50_C4GJV0 Putative uncharacterized protein n=1 Tax=Kingell... 67 1e-10 UniRef50_C4WG62 Putative uncharacterized protein n=1 Tax=Ochroba... 63 4e-09 UniRef50_A9IX71 Putative uncharacterized protein n=2 Tax=Bartone... 61 8e-09 UniRef50_B9JYW2 Putative uncharacterized protein n=3 Tax=Rhizobi... 61 1e-08 UniRef50_UPI000190517F hypothetical protein RetlG_31258 n=1 Tax=... 61 2e-08 UniRef50_A0P331 Putative uncharacterized protein n=1 Tax=Labrenz... 59 4e-08 UniRef50_Q0FYV9 Putative uncharacterized protein n=1 Tax=Fulvima... 54 2e-06 UniRef50_D0D4E3 Conserved domain protein n=1 Tax=Citreicella sp.... 53 2e-06 UniRef50_D2TY44 Transcriptional regulator, Nlp n=1 Tax=Arsenopho... 47 2e-04 UniRef50_D0Z924 Putative uncharacterized protein n=1 Tax=Edwards... 46 4e-04 UniRef50_D0D3V8 Conserved domain protein n=1 Tax=Citreicella sp.... 44 0.001 UniRef50_D2F169 Putative uncharacterized protein n=1 Tax=Bactero... 44 0.002 UniRef50_D0J193 Putative uncharacterized protein n=1 Tax=Comamon... 43 0.002 UniRef50_A4EFH3 Putative uncharacterized protein n=1 Tax=Roseoba... 41 0.008 UniRef50_D1A859 Transcriptional regulator, XRE family n=6 Tax=Ac... 41 0.011 UniRef50_A1WY71 Putative transcriptional regulator n=1 Tax=Halor... 40 0.017 UniRef50_Q3IGJ6 Putative uncharacterized protein n=1 Tax=Pseudoa... 40 0.018 UniRef50_C4VKQ5 Helix-turn-helix domain protein n=6 Tax=Lactobac... 39 0.044 >UniRef50_P0ACH3 Sugar fermentation stimulation protein B n=66 Tax=Enterobacteriaceae RepID=SFSB_ECO57 Length = 92 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 92/92 (100%), Positives = 92/92 (100%) Query: 1 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD 60 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD Sbjct: 1 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD 60 Query: 61 PWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK 92 PWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK Sbjct: 61 PWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK 92 >UniRef50_B7LR55 DNA-binding transcriptional activator of maltose metabolism n=107 Tax=Gammaproteobacteria RepID=B7LR55_ESCF3 Length = 107 Score = 140 bits (353), Expect = 1e-32, Method: Composition-based stats. Identities = 79/86 (91%), Positives = 83/86 (96%) Query: 1 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD 60 ME+ IDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANAL+RPWPKGE IIAKALGT+ Sbjct: 15 MENKLIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALTRPWPKGEWIIAKALGTE 74 Query: 61 PWVIWPSRYHDPQTHEFIDRTQLMRS 86 PWVIWPSRYHDPQTHEFIDRT+LMRS Sbjct: 75 PWVIWPSRYHDPQTHEFIDRTRLMRS 100 >UniRef50_C4X0G5 Regulatory factor of maltose metabolism n=5 Tax=Klebsiella RepID=C4X0G5_KLEPN Length = 118 Score = 138 bits (349), Expect = 4e-32, Method: Composition-based stats. Identities = 70/83 (84%), Positives = 77/83 (92%) Query: 3 SNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPW 62 FIDWHPADI+AGLRK+GTS+AAESRR+GLSSSTLANAL+RPWPKGE+IIA AL T PW Sbjct: 30 DKFIDWHPADIVAGLRKRGTSLAAESRRHGLSSSTLANALTRPWPKGELIIATALETQPW 89 Query: 63 VIWPSRYHDPQTHEFIDRTQLMR 85 VIWPSRYHDP THEFIDRTQ+MR Sbjct: 90 VIWPSRYHDPVTHEFIDRTQMMR 112 >UniRef50_C5BF99 Sugar fermentation stimulation protein n=30 Tax=Enterobacteriaceae RepID=C5BF99_EDWI9 Length = 94 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 52/86 (60%), Positives = 64/86 (74%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHPA+IIA L K+ ++ SR GLSSSTLANAL+RPWPKGE +IA+AL P IWP Sbjct: 8 DWHPAEIIAALHKRRLTLTQVSRNAGLSSSTLANALTRPWPKGEWLIAEALSIHPSEIWP 67 Query: 67 SRYHDPQTHEFIDRTQLMRSYTKPKK 92 SRY+DP THE +DR +L+R+ KK Sbjct: 68 SRYYDPITHELLDRKRLIRNVASVKK 93 >UniRef50_Q6D9D0 Sugar fermentation stimulation protein n=16 Tax=Enterobacteriaceae RepID=Q6D9D0_ERWCT Length = 87 Score = 125 bits (314), Expect = 4e-28, Method: Composition-based stats. Identities = 56/82 (68%), Positives = 65/82 (79%) Query: 4 NFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWV 63 DWHPADIIA LRKK T++AA SR GLSSSTLANALSRPWPKGE +IA AL P Sbjct: 4 RKQDWHPADIIAALRKKNTTLAAVSRAAGLSSSTLANALSRPWPKGEWLIADALSIHPSE 63 Query: 64 IWPSRYHDPQTHEFIDRTQLMR 85 IWPSRY++P+T+E IDR +L+R Sbjct: 64 IWPSRYYNPETNELIDRKKLIR 85 >UniRef50_B4ETI1 Phage protein n=47 Tax=Gammaproteobacteria RepID=B4ETI1_PROMH Length = 90 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 47/76 (61%), Positives = 57/76 (75%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 +WHPADIIA L+KKGT++A SR GLSSSTL+NALSRPWPKGE IIAK L P IWP Sbjct: 5 NWHPADIIASLKKKGTTLAEVSRAAGLSSSTLSNALSRPWPKGEQIIAKELDIPPSTIWP 64 Query: 67 SRYHDPQTHEFIDRTQ 82 RY D + ++ I + + Sbjct: 65 ERYFDEKGNQIIRKLR 80 >UniRef50_UPI00019F1682 hypothetical protein CATC2_16475 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI00019F1682 Length = 98 Score = 111 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 53/78 (67%) Query: 5 FIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVI 64 DWHPA IIA L K+GTS+AA SR+ GL+SSTLANAL+RP PKGE +IA AL P I Sbjct: 3 KQDWHPAYIIAALHKRGTSLAALSRQAGLASSTLANALTRPCPKGEWLIASALKVHPATI 62 Query: 65 WPSRYHDPQTHEFIDRTQ 82 WP+RY + + Q Sbjct: 63 WPTRYDGQEAYRLPKHPQ 80 >UniRef50_A4TP35 DNA-binding protein n=23 Tax=Yersinia RepID=A4TP35_YERPP Length = 81 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 45/72 (62%), Positives = 55/72 (76%) Query: 5 FIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVI 64 DWHPADI+AGL+K+GT+MAA SR++GL+SSTLAN L RPWPKGE +IA+ L P I Sbjct: 3 KQDWHPADILAGLKKRGTTMAALSRKSGLASSTLANTLLRPWPKGERLIAEVLELHPAEI 62 Query: 65 WPSRYHDPQTHE 76 WPSRY P+ Sbjct: 63 WPSRYLKPKKSP 74 >UniRef50_C0DX46 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DX46_EIKCO Length = 92 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 34/78 (43%), Positives = 46/78 (58%) Query: 4 NFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWV 63 +DWH ADIIA L+K+G S+ A + + + +TL AL +P+PK E +IA ALG P Sbjct: 12 ELLDWHRADIIAALKKRGWSIRALAAQANVHPTTLYGALIKPYPKSERVIADALGMKPEQ 71 Query: 64 IWPSRYHDPQTHEFIDRT 81 IWP RY + RT Sbjct: 72 IWPQRYAARNFQPVLRRT 89 >UniRef50_Q322I2 Transcriptional regulatory protein n=8 Tax=Gammaproteobacteria RepID=Q322I2_SHIBS Length = 68 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 46/66 (69%), Positives = 55/66 (83%) Query: 5 FIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVI 64 DWHPADIIAGL+K+GTS++A SR+ GL+SSTLANAL+R WPKGE +IA+ALG P I Sbjct: 3 LQDWHPADIIAGLKKRGTSLSALSRQAGLASSTLANALTRRWPKGERLIAEALGIKPEQI 62 Query: 65 WPSRYH 70 WPSRY Sbjct: 63 WPSRYR 68 >UniRef50_C7BNF2 Sugar fermentation stimulation protein b (Ner-like protein) n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BNF2_PHOAA Length = 109 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 43/69 (62%), Positives = 51/69 (73%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHPADIIA L+K+GT+++A SR+ GL+SSTL+NAL R WPKGE IIA LG P IWP Sbjct: 5 DWHPADIIAALKKQGTTLSAVSRKAGLASSTLSNALHRQWPKGEAIIATKLGLSPSEIWP 64 Query: 67 SRYHDPQTH 75 SRY Sbjct: 65 SRYQKKTNS 73 >UniRef50_D0FNK4 Sugar fermentation stimulation protein B n=2 Tax=Erwinia pyrifoliae RepID=D0FNK4_ERWPY Length = 109 Score = 108 bits (271), Expect = 4e-23, Method: Composition-based stats. Identities = 44/68 (64%), Positives = 51/68 (75%) Query: 4 NFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWV 63 D HPADI+A +K+ TS+AA SR+ GL+S TLANAL RPWPKGE IIA ALG P Sbjct: 3 KRRDMHPADILAAFKKRQTSLAALSRQAGLNSGTLANALKRPWPKGEFIIAAALGVHPSA 62 Query: 64 IWPSRYHD 71 IWPSRY+D Sbjct: 63 IWPSRYYD 70 >UniRef50_Q9RG38 Pln n=4 Tax=Enterobacteriaceae RepID=Q9RG38_PHOLU Length = 70 Score = 108 bits (270), Expect = 5e-23, Method: Composition-based stats. Identities = 43/65 (66%), Positives = 49/65 (75%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWH ADIIA L+K+GTS+AA SR GL+SSTL+N L RPWPKGE IIA L +P IWP Sbjct: 6 DWHKADIIAALKKRGTSLAAVSREAGLASSTLSNVLHRPWPKGERIIATILNCEPSEIWP 65 Query: 67 SRYHD 71 SRY Sbjct: 66 SRYFK 70 >UniRef50_C9R6S3 Possible DNA-binding protein n=6 Tax=Proteobacteria RepID=C9R6S3_AGGAD Length = 83 Score = 108 bits (269), Expect = 7e-23, Method: Composition-based stats. Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 1 MESNF--IDWHPADIIAGLRKKGTSMAAESRRNGLSS-STLANALSRPWPKGEMIIAKAL 57 ME+ IDWH DI A L KKG S+ S ++G S+ STL NAL RPW KGE IIA+A+ Sbjct: 1 METKKTAIDWHREDIKAALAKKGWSLRQLSLKHGYSNGSTLKNALDRPWLKGERIIAEAI 60 Query: 58 GTDPWVIWPSRYHDPQTHEFIDR 80 G VIW SRY ++ DR Sbjct: 61 GVPAEVIWASRYEQRNLKKYADR 83 >UniRef50_A1IT90 Ner-like DNA-binding protein n=4 Tax=Neisseriaceae RepID=A1IT90_NEIMA Length = 87 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 36/71 (50%), Positives = 46/71 (64%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 +WH ADI+A L+KKG S+ A S GLS +TL +AL+ P+ KGE IIA A+G +P IWP Sbjct: 9 NWHRADIVAALKKKGWSLRALSIEAGLSPNTLRSALAAPYLKGERIIAAAIGVEPEEIWP 68 Query: 67 SRYHDPQTHEF 77 RY D Sbjct: 69 ERYADRNLKPV 79 >UniRef50_UPI000196E47E sugar fermentation stimulation protein n=1 Tax=Neisseria mucosa ATCC 25996 RepID=UPI000196E47E Length = 87 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 35/71 (49%), Positives = 48/71 (67%) Query: 2 ESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDP 61 ES DWH A+I+A +RK+G ++ A S +GLS++TL +AL +PKGE II+ LG P Sbjct: 16 ESRKQDWHRAEIVAAVRKRGKTITALSIESGLSANTLKSALQFKYPKGERIISDFLGVPP 75 Query: 62 WVIWPSRYHDP 72 IWPSRY + Sbjct: 76 QEIWPSRYPEQ 86 >UniRef50_P06020 DNA-binding protein Ner n=7 Tax=root RepID=NER_BPMU Length = 75 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 41/68 (60%), Positives = 49/68 (72%) Query: 4 NFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWV 63 DWH AD+IAGL+K+ S++A SR+ G + +TLANAL R WPKGE IIA AL T P V Sbjct: 6 KARDWHRADVIAGLKKRKLSLSALSRQFGYAPTTLANALERHWPKGEQIIANALETKPEV 65 Query: 64 IWPSRYHD 71 IWPSRY Sbjct: 66 IWPSRYQA 73 >UniRef50_B7UGE4 Predicted DNA-binding protein n=4 Tax=Gammaproteobacteria RepID=B7UGE4_ECO27 Length = 78 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 38/66 (57%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWH I+A + KG ++ S R GL +L NAL R PK E IIA A+G +P IWP Sbjct: 11 DWHREYIVAAVHTKGFTLRELSERAGLKKDSLKNALYRSCPKYERIIADAIGVEPAEIWP 70 Query: 67 SRYHDP 72 SRY Sbjct: 71 SRYASK 76 >UniRef50_B8FGN9 Putative transcriptional regulator, Nlp n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGN9_DESAA Length = 90 Score = 99.2 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 30/68 (44%), Positives = 40/68 (58%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DW+P DI A L K G ++A R+ GL+ T N +P+P+ E IA+ LGT P IWP Sbjct: 15 DWNPWDIKAALGKAGYTLADIGRQEGLAPRTANNVFRKPYPRIERAIAEVLGTVPQAIWP 74 Query: 67 SRYHDPQT 74 +RY D Sbjct: 75 TRYDDSGN 82 >UniRef50_B6ISR8 Phage DNA-binding protein Ner, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ISR8_RHOCS Length = 107 Score = 98.5 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 WH DI A +RK+GT++ + NGL SST AL+ P GE +IA+ LG V+WP Sbjct: 14 WHKEDIKAAIRKRGTTVTDLALSNGLGSSTCRVALNTPCFTGEQVIAEFLGVPAQVLWPD 73 Query: 68 RYHDPQTHEFI---DRTQLMRS 86 RY T +R + +R+ Sbjct: 74 RYEPDGTPRHPRVRNRLKGIRN 95 >UniRef50_D2NHS6 Phage DNA-binding protein n=5 Tax=Enterobacteriaceae RepID=D2NHS6_ECOLX Length = 89 Score = 98.5 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 33/68 (48%), Positives = 43/68 (63%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 +WH ADI+A L K+G ++A SR +GL+ TL NAL R +P+ E IIA AL T P +WP Sbjct: 18 NWHRADIVAALHKRGLTLALLSRSHGLAPRTLNNALERHYPRAERIIAGALDTTPETLWP 77 Query: 67 SRYHDPQT 74 RY Sbjct: 78 ERYALKNG 85 >UniRef50_P46496 Mu-like prophage FluMu DNA-binding protein Ner n=7 Tax=Pasteurellaceae RepID=NER_HAEIN Length = 89 Score = 97.7 bits (242), Expect = 9e-20, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 42/76 (55%) Query: 6 IDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIW 65 DWH ADI+A L+K G S+ + ++ +S +TL L + +PK E ++A A+G P VIW Sbjct: 13 QDWHRADILAELKKNGWSLRSLAKEGQVSYNTLKTVLDKSYPKMERLVANAIGVPPEVIW 72 Query: 66 PSRYHDPQTHEFIDRT 81 R+ + + Sbjct: 73 AGRFAERNKRPTLQHK 88 >UniRef50_A9ICZ3 Mu-like prophage FluMu DNA-binding protein Ner n=5 Tax=Proteobacteria RepID=A9ICZ3_BORPD Length = 100 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 2 ESNFIDWHPADIIAGLRKKGTSMAAESRRNGLS-SSTLANALSRPWPKGEMIIAKALGTD 60 ++ DWH ADI A L K G S+ ++ +G S +TL L RPWPKGE IIA A+G Sbjct: 9 KTALKDWHRADIKAALEKAGWSLRRLAKHHGYSSPTTLTIPLMRPWPKGERIIASAIGRS 68 Query: 61 PWVIWPSRYHDPQTHEF 77 P IWPSRY + + Sbjct: 69 PAEIWPSRYIEKYSDPI 85 >UniRef50_Q0EWA6 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWA6_9PROT Length = 106 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 35/64 (54%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 WH DI A LRK+G + S +G + + L WPK E IIA L +PW IWP Sbjct: 13 WHREDIKAELRKRGWPLVRVSTEHGYARKSAQATLGHSWPKMERIIANILEVEPWEIWPH 72 Query: 68 RYHD 71 RY+D Sbjct: 73 RYND 76 >UniRef50_C6E6U5 Putative transcriptional regulator, Nlp n=1 Tax=Geobacter sp. M21 RepID=C6E6U5_GEOSM Length = 103 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 6 IDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIW 65 DWHPADI A L K G S A +R NG ++ L R W + E ++AK LG IW Sbjct: 11 QDWHPADIKAALDKAGYSFARIARENGYRLNSPNVVLHRAWSQVEQLVAKILGVQASEIW 70 Query: 66 PSRYHDPQTHEFIDRTQLMRSYTKPKK 92 PSRY D + RT ++ K Sbjct: 71 PSRY-DRRGRPLKSRTARVKQSRTISK 96 >UniRef50_A4NLS5 Ner-like DNA-binding protein n=2 Tax=Pasteurellaceae RepID=A4NLS5_HAEIN Length = 78 Score = 91.5 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DW I+ L ++ ++ + S + GL+ STL NAL +PKGE IIA+A+G + IW Sbjct: 5 DWSRKRIVYELHERNITLHSLSVKAGLAPSTLKNALRVSYPKGEKIIAEAIGVEASEIWV 64 Query: 67 SRYHDPQTHEFIDRT 81 +RY + + +DRT Sbjct: 65 TRYAKRE-NRHVDRT 78 >UniRef50_D2TQ31 Prophage transcriptional regulator Ner n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TQ31_CITRO Length = 76 Score = 91.5 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 39/63 (61%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHP I+ +R + SM A +R+ G+ + L NA+ R PK E IIA+ LG P IWP Sbjct: 9 DWHPQRILGEVRAREGSMRALARKAGVGQNNLYNAVYRHVPKYEGIIAECLGVPPEEIWP 68 Query: 67 SRY 69 SRY Sbjct: 69 SRY 71 >UniRef50_Q8X345 Putative DNA-binding protein n=1 Tax=Escherichia coli O157:H7 RepID=Q8X345_ECO57 Length = 82 Score = 91.1 bits (225), Expect = 9e-18, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 33/64 (51%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DW P I A L G S+ + S + G S +L + L P + IIA ALG P IWP Sbjct: 10 DWPPEIIKARLHMAGLSLRSLSLKAGYSRDSLKSVLRTPCRPYQQIIADALGVSPEEIWP 69 Query: 67 SRYH 70 SRY Sbjct: 70 SRYQ 73 >UniRef50_A9HP45 Putative sugar fermentation stimulation protein B n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HP45_GLUDA Length = 103 Score = 90.8 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPW--PKGEMIIAKALGTDPWVIW 65 H DI A LRK+ S+A+ SR+ GL+ + L A+ +P + E IA+ LG P ++ Sbjct: 10 MHVEDIKAELRKRYGSLASISRQLGLNPNALTAAIHKPGNSVRSERRIAELLGKAPHEVF 69 Query: 66 PSRYHDPQT--HEFIDRTQLMR 85 P R+H T +DR R Sbjct: 70 PDRFHKDGTPISRVVDRKPTCR 91 >UniRef50_Q12EU1 Putative transcriptional regulator, Nlp n=1 Tax=Polaromonas sp. JS666 RepID=Q12EU1_POLSJ Length = 125 Score = 90.0 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 D HPAD+IA L K+GTS+ + NG S + L+ PW E ++AKAL P +WP Sbjct: 14 DMHPADVIAALHKRGTSLRKIALENGYSH--IQRVLTSPWLAAEQLVAKALDAKPEDLWP 71 Query: 67 SRYHDPQTHEFIDRTQLMRSYTKPKK 92 SRY +P + + T P++ Sbjct: 72 SRYLNPADRALAFQQTRKITVTMPRQ 97 >UniRef50_A7IP05 Putative transcriptional regulator, Nlp n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7IP05_XANP2 Length = 112 Score = 88.8 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 37/69 (53%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHP +I + +RK+G+++ SR GL +AL P +GE IA+ L P IWP Sbjct: 19 DWHPEEIKSAVRKRGSTLYDLSRDAGLPEHACRSALRGPNFEGEFAIAEFLSLSPREIWP 78 Query: 67 SRYHDPQTH 75 SR+ Sbjct: 79 SRFRSDGGR 87 >UniRef50_A1TUL9 Putative transcriptional regulator, Nlp n=1 Tax=Acidovorax citrulli AAC00-1 RepID=A1TUL9_ACIAC Length = 90 Score = 88.1 bits (217), Expect = 7e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHPAD+ A L K+G S+ ++ +G S L+ W E I+A ALG IWP Sbjct: 13 DWHPADVKAALEKRGVSLRKLAKTHGYSH--FQRVLTTHWWAAEQIVAAALGLRAEEIWP 70 Query: 67 SRYHDPQTH 75 SRY + Sbjct: 71 SRYEVSRER 79 >UniRef50_C6P2C1 Putative transcriptional regulator, Nlp n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P2C1_9PROT Length = 114 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 6 IDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRP-WPKGEMIIAKALGTDPWVI 64 DWHPADI A L K G ++A+ + G+ SS+ ++ +P E IA A+G P VI Sbjct: 12 QDWHPADIKAALHKNGITLASIAEVYGMRSSSSLSSTFTRSYPLNEKRIADAIGVHPMVI 71 Query: 65 WPSRYHDPQT 74 WPSRY+ + Sbjct: 72 WPSRYNKDGS 81 >UniRef50_B3QCI8 Putative transcriptional regulator, Nlp n=1 Tax=Rhodopseudomonas palustris TIE-1 RepID=B3QCI8_RHOPT Length = 99 Score = 80.7 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 37/83 (44%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 W I A + +KG ++ +R+ GL S AL R +GE IA+ALG P +WP Sbjct: 5 WDRHAIKAAVHRKGLTLVGIARKAGLEESACKVALRRRNWRGEAAIAEALGLHPSALWPD 64 Query: 68 RYHDPQTHEFIDRTQLMRSYTKP 90 RY +R + P Sbjct: 65 RYRSSAPIYRRNRNHVRACVASP 87 >UniRef50_B7UXK3 Ner-like protein n=5 Tax=root RepID=B7UXK3_PSEA8 Length = 118 Score = 79.2 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 13 IIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYHDP 72 I LR +G+S+A +R +SS + NA P+P+ E IA L P V+WP R+ D Sbjct: 17 IKYQLRTRGSSLAEVARSLNVSSPAVKNAKLTPYPRVERAIAAVLNLSPLVLWPERWLDE 76 Query: 73 QT--HEFIDRTQLMRSYTK 89 + + +R++ +++Y + Sbjct: 77 ENPKRQRPNRSETLQAYVR 95 >UniRef50_A0PBQ2 Ner-like protein n=9 Tax=Gammaproteobacteria RepID=A0PBQ2_PASPI Length = 90 Score = 77.3 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 10 PADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRY 69 I L+ +G S+AA R++ S ++ AL +P P E IA ALG P IWP RY Sbjct: 17 REWIKYKLKIQGLSLAALGRKHKTSRQVVSTALYKPSPCWEHEIATALGVKPSEIWPERY 76 Query: 70 HDPQTHEFIDRTQ 82 + HE R + Sbjct: 77 DEE--HEIPLRHK 87 >UniRef50_B2NA08 Putative DNA-binding protein Ner n=3 Tax=Enterobacteriaceae RepID=B2NA08_ECOLX Length = 83 Score = 75.7 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 2 ESNFIDWHPADIIAGLRKKGTS-MAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD 60 E DW I L+ G S S G + +L + P K E +I+ A+G Sbjct: 5 EDRDRDWPSLKIQLALKDNGWSSFRELSLHAGYAQDSLKAVVRTPNKKYERVISDAIGVP 64 Query: 61 PWVIWPSRYHDPQT 74 P +IWPSRY + Sbjct: 65 PEIIWPSRYRNDGF 78 >UniRef50_A8I7I4 Putative transcriptional regulator n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8I7I4_AZOC5 Length = 101 Score = 72.7 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 W I A + ++ T++ A + GL S +AL R GE +A LG P IWP Sbjct: 9 WDRHAIRAEVHRRETTLTAIALAAGLDQSACRSALVRRHLAGEKALADFLGIAPEKIWPE 68 Query: 68 RYHDP 72 RY P Sbjct: 69 RYAKP 73 >UniRef50_A9D2T0 Putative uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D2T0_9RHIZ Length = 101 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 33/67 (49%) Query: 12 DIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYHD 71 I A L + G ++A R LS+ T N + P +GE IA ALGT P ++WP+RY Sbjct: 17 RIKAKLLEAGLTLAEIDRIYQLSNGTARNTMREPNARGERAIAAALGTRPHLLWPTRYRP 76 Query: 72 PQTHEFI 78 Sbjct: 77 SGQRRSP 83 >UniRef50_A9IV17 Putative uncharacterized protein n=2 Tax=Bartonella tribocorum CIP 105476 RepID=A9IV17_BART1 Length = 150 Score = 67.7 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 W I+A LR++ ++A ++ LSSS++ + +RP K E IA +G ++ Sbjct: 60 WDRHSILAELRRRNMTLAELAKAYQLSSSSVQHIWTRPNEKAERAIADFIGLPVEQVFSD 119 Query: 68 RYHDPQTHEFI 78 RY P++ I Sbjct: 120 RY--PKSRRRI 128 >UniRef50_C4GJV0 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GJV0_9NEIS Length = 136 Score = 67.3 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%) Query: 4 NFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWV 63 +D HP I A +R +G ++ +R +S ++ AL +P GE IA L Sbjct: 51 KGMDMHPELIRAEIRMRGKTLTDLARLYDVSPKVVSMALKQPSLAGEKAIATFLNKSLHE 110 Query: 64 IWPSRYHDPQTHEFID 79 ++P R+ Sbjct: 111 LFPERWTQDGRRIRPR 126 >UniRef50_C4WG62 Putative uncharacterized protein n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WG62_9RHIZ Length = 133 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 38/83 (45%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 W +I++ LR++ ++A ++ GLS S + N +RP E IA LG V++ Sbjct: 42 WDRHEILSRLRRQKKTLAGIAKDYGLSLSGVKNIWTRPNEPAERAIADVLGVPVEVVFCD 101 Query: 68 RYHDPQTHEFIDRTQLMRSYTKP 90 RY + + S KP Sbjct: 102 RYPKKRNRIHVSEYPSRSSRGKP 124 >UniRef50_A9IX71 Putative uncharacterized protein n=2 Tax=Bartonella RepID=A9IX71_BART1 Length = 101 Score = 61.5 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 W I+A LR++ ++A ++ LSSS++ + +R K E IA +G ++ Sbjct: 11 WDRHSILAELRRRNMTLAELAKAYQLSSSSVQHIWTRSNEKAERAIADFIGLPVEQVFSD 70 Query: 68 RYHDPQTHEFI 78 RY P++ I Sbjct: 71 RY--PKSRRRI 79 >UniRef50_B9JYW2 Putative uncharacterized protein n=3 Tax=Rhizobium/Agrobacterium group RepID=B9JYW2_AGRVS Length = 112 Score = 60.7 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 29/67 (43%) Query: 12 DIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYHD 71 I A L G ++ A R GL T N L + GE IA AL T P ++W SRYH Sbjct: 20 RIKARLNVAGLTLLAIDREYGLPRGTAGNTLQQANLAGERAIAAALKTRPHLLWRSRYHP 79 Query: 72 PQTHEFI 78 Sbjct: 80 DGQRRAP 86 >UniRef50_UPI000190517F hypothetical protein RetlG_31258 n=1 Tax=Rhizobium etli GR56 RepID=UPI000190517F Length = 110 Score = 60.7 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 W I+A LR+KG ++ + N S +RP E II+ LG ++P Sbjct: 25 WDRHLILAELRRKGMTLTKLAEMNQKSPGGFRTIWTRPNEGNEAIISAFLGVPAAELFPD 84 Query: 68 RYHDPQT 74 RY T Sbjct: 85 RYPKKTT 91 >UniRef50_A0P331 Putative uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P331_9RHOB Length = 103 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 37/79 (46%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 W I A L ++G ++A + ++ ++ ++ +RP K E I++ L T +WP Sbjct: 12 WDKHSIKAELHRQGMTLAKLAELARMTPNSFSHVWTRPVRKAEASISEFLETPLKDLWPD 71 Query: 68 RYHDPQTHEFIDRTQLMRS 86 RY + + +R+ Sbjct: 72 RYPIRTARILSSKYENLRA 90 >UniRef50_Q0FYV9 Putative uncharacterized protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FYV9_9RHIZ Length = 107 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 +W I A + ++G S++ +R L S AL KG IA ALG ++P Sbjct: 11 EWDRHTIKAEVHRRGLSLSGIARDADLPESACRLALMGMNRKGADAIAAALGIPFDTLFP 70 >UniRef50_D0D4E3 Conserved domain protein n=1 Tax=Citreicella sp. SE45 RepID=D0D4E3_9RHOB Length = 80 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%) Query: 6 IDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWP--KGEMIIAKALGTDPWV 63 +D H + A LR +GTS+A SR G+S S L R + E +A+A+G P Sbjct: 9 LDAH-ERLKAELRIRGTSLAQISRELGVSDSALTLVGKRMCRSQRIEEALAQAVGMSPEE 67 Query: 64 IWP 66 ++P Sbjct: 68 LFP 70 >UniRef50_D2TY44 Transcriptional regulator, Nlp n=1 Tax=Arsenophonus nasoniae RepID=D2TY44_9ENTR Length = 76 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 +WH A+I+A ++ ++++ S + GL+S L N L R + E I ++ P Sbjct: 7 NWHGANIVAAF-QQNITLSSISHKFGLNSKILNNRLIRIFSSDEKCIIASINLHQSATLP 65 Query: 67 SRYHD 71 S Y D Sbjct: 66 SYYCD 70 >UniRef50_D0Z924 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0Z924_EDWTE Length = 38 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 21/33 (63%) Query: 42 LSRPWPKGEMIIAKALGTDPWVIWPSRYHDPQT 74 + R +P+ E +IA+AL P IWP RY + +T Sbjct: 1 MERHYPRAERLIAQALDMRPEDIWPQRYRNKKT 33 >UniRef50_D0D3V8 Conserved domain protein n=1 Tax=Citreicella sp. SE45 RepID=D0D3V8_9RHOB Length = 68 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 16 GLRKKGTSMAAESRRNGLSSSTLANALS--RPWPKGEMIIAKALGTDPWVIWPSRYHDPQ 73 LR +G S+A+ +R + ST+ R K E +A A+ P ++P RY + Sbjct: 2 ELRLRGKSIASVARELEVLRSTVTLVSQGLRRSLKIERALADAVEKTPAELFPDRYPAEE 61 Query: 74 TH 75 Sbjct: 62 DS 63 >UniRef50_D2F169 Putative uncharacterized protein n=1 Tax=Bacteroides sp. D20 RepID=D2F169_9BACE Length = 92 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Query: 18 RKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMI--IAKALGTD 60 + +G ++ + + G++ STLAN LS+ P E + IA ALG + Sbjct: 10 KMQGITLQELADKMGVARSTLANTLSKGNPTIETLSKIADALGVE 54 >UniRef50_D0J193 Putative uncharacterized protein n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J193_COMTE Length = 86 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRP--WPKGEMIIAKALGTDPWVIW 65 HP I A LR KG S A + +++S+++ +S + IA+ G ++W Sbjct: 1 MHPEQIKAALRMKGISPTALASEMRVANSSVSQVISGRAVSARIRQRIAEITGMPVDMLW 60 Query: 66 P 66 P Sbjct: 61 P 61 >UniRef50_A4EFH3 Putative uncharacterized protein n=1 Tax=Roseobacter sp. CCS2 RepID=A4EFH3_9RHOB Length = 54 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 27 ESRRNGLSSSTLANALSRPWP--KGEMIIAKALGTDPWVIWPSRYHDPQT 74 SR GL+ ST++ + + IA LG P +WP RY + Sbjct: 1 MSRSLGLAQSTVSVVSMGHGRSHRIQEAIASELGKTPEELWPKRYRTKEG 50 >UniRef50_D1A859 Transcriptional regulator, XRE family n=6 Tax=Actinomycetales RepID=D1A859_THECD Length = 247 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANAL---SRPWPKGEMIIAKALGTDPWVI 64 + A L ++G + AA + G+ T+ + P+ + +A LG D + Sbjct: 1 MPNERLRAALLERGLTAAALAEAIGVDPKTVERWITKGRTPYRRHRFAVASQLGVDETYL 60 Query: 65 WPS 67 WP Sbjct: 61 WPE 63 >UniRef50_A1WY71 Putative transcriptional regulator n=1 Tax=Halorhodospira halophila SL1 RepID=A1WY71_HALHL Length = 227 Score = 40.3 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 11 ADIIAGLRKKGTSMAAESRRNGLSSSTLANALS-RPWPKGEMI--IAKALGTDPWVI 64 I R++G +A +RR G+S L +A +P I IA AL P + Sbjct: 7 QYIRKTARERGLPLAELARRAGMSRQALYDAWQPGRYPSMSTIVRIANALEVHPLAL 63 >UniRef50_Q3IGJ6 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3IGJ6_PSEHT Length = 93 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKG--EMIIAKALGTDPWVIW 65 + +I A + KKG ++A + S +++ + R IAKA+ ++ Sbjct: 1 MNHEEIKAAIYKKGYTLAMVAECINKHPSHISSIIHRRNTSSVIANAIAKAIDMPVEQVF 60 Query: 66 PS 67 P Sbjct: 61 PD 62 >UniRef50_C4VKQ5 Helix-turn-helix domain protein n=6 Tax=Lactobacillus RepID=C4VKQ5_9LACO Length = 213 Score = 39.1 bits (90), Expect = 0.044, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Query: 17 LRKKGTSMAAESRRNGLSSSTLANALSR------PWPKGEMIIAKALGTDPWVIWPSRYH 70 L+K+G + + + G++ +T+ N P K + +AKAL +P I PS Sbjct: 27 LKKRGMTPKELAEKTGIAYTTINNYRRVYAQPSLPSKKNLLAMAKALNCEPDEIDPSYLQ 86 Query: 71 DPQTHEFIDRTQLMRSYTK 89 T++ +D + ++ ++ Sbjct: 87 FVVTNDKLDNKENLQIFSS 105 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACH3 Sugar fermentation stimulation protein B n=66 Ta... 131 6e-30 UniRef50_C4X0G5 Regulatory factor of maltose metabolism n=5 Tax=... 125 5e-28 UniRef50_B7LR55 DNA-binding transcriptional activator of maltose... 123 1e-27 UniRef50_C5BF99 Sugar fermentation stimulation protein n=30 Tax=... 116 2e-25 UniRef50_Q6D9D0 Sugar fermentation stimulation protein n=16 Tax=... 116 3e-25 UniRef50_UPI00019F1682 hypothetical protein CATC2_16475 n=1 Tax=... 112 4e-24 UniRef50_B4ETI1 Phage protein n=47 Tax=Gammaproteobacteria RepID... 107 9e-23 UniRef50_A4TP35 DNA-binding protein n=23 Tax=Yersinia RepID=A4TP... 106 2e-22 UniRef50_C7BNF2 Sugar fermentation stimulation protein b (Ner-li... 106 2e-22 UniRef50_D0FNK4 Sugar fermentation stimulation protein B n=2 Tax... 105 5e-22 UniRef50_Q9RG38 Pln n=4 Tax=Enterobacteriaceae RepID=Q9RG38_PHOLU 104 9e-22 UniRef50_A1IT90 Ner-like DNA-binding protein n=4 Tax=Neisseriace... 103 2e-21 UniRef50_Q322I2 Transcriptional regulatory protein n=8 Tax=Gamma... 103 2e-21 UniRef50_UPI000196E47E sugar fermentation stimulation protein n=... 101 5e-21 UniRef50_C0DX46 Putative uncharacterized protein n=1 Tax=Eikenel... 101 7e-21 UniRef50_C9R6S3 Possible DNA-binding protein n=6 Tax=Proteobacte... 100 2e-20 UniRef50_P06020 DNA-binding protein Ner n=7 Tax=root RepID=NER_BPMU 100 2e-20 UniRef50_P46496 Mu-like prophage FluMu DNA-binding protein Ner n... 98 7e-20 UniRef50_B6ISR8 Phage DNA-binding protein Ner, putative n=1 Tax=... 98 1e-19 UniRef50_B7UGE4 Predicted DNA-binding protein n=4 Tax=Gammaprote... 97 1e-19 UniRef50_B8FGN9 Putative transcriptional regulator, Nlp n=1 Tax=... 96 3e-19 UniRef50_Q12EU1 Putative transcriptional regulator, Nlp n=1 Tax=... 96 3e-19 UniRef50_C6E6U5 Putative transcriptional regulator, Nlp n=1 Tax=... 95 4e-19 UniRef50_D2NHS6 Phage DNA-binding protein n=5 Tax=Enterobacteria... 95 7e-19 UniRef50_A9ICZ3 Mu-like prophage FluMu DNA-binding protein Ner n... 94 1e-18 UniRef50_B3QCI8 Putative transcriptional regulator, Nlp n=1 Tax=... 90 2e-17 UniRef50_Q8X345 Putative DNA-binding protein n=1 Tax=Escherichia... 90 2e-17 UniRef50_C4WG62 Putative uncharacterized protein n=1 Tax=Ochroba... 90 3e-17 UniRef50_A9IV17 Putative uncharacterized protein n=2 Tax=Bartone... 90 3e-17 UniRef50_Q0EWA6 Putative uncharacterized protein n=1 Tax=Maripro... 88 6e-17 UniRef50_A7IP05 Putative transcriptional regulator, Nlp n=1 Tax=... 88 7e-17 UniRef50_A4NLS5 Ner-like DNA-binding protein n=2 Tax=Pasteurella... 88 1e-16 UniRef50_D2TQ31 Prophage transcriptional regulator Ner n=1 Tax=C... 87 1e-16 UniRef50_C4GJV0 Putative uncharacterized protein n=1 Tax=Kingell... 87 1e-16 UniRef50_C6P2C1 Putative transcriptional regulator, Nlp n=1 Tax=... 87 2e-16 UniRef50_A1TUL9 Putative transcriptional regulator, Nlp n=1 Tax=... 85 8e-16 UniRef50_A0P331 Putative uncharacterized protein n=1 Tax=Labrenz... 84 1e-15 UniRef50_A9HP45 Putative sugar fermentation stimulation protein ... 83 3e-15 UniRef50_B2NA08 Putative DNA-binding protein Ner n=3 Tax=Enterob... 82 6e-15 UniRef50_UPI000190517F hypothetical protein RetlG_31258 n=1 Tax=... 81 1e-14 UniRef50_A8I7I4 Putative transcriptional regulator n=1 Tax=Azorh... 80 2e-14 UniRef50_A9IX71 Putative uncharacterized protein n=2 Tax=Bartone... 80 2e-14 UniRef50_A0PBQ2 Ner-like protein n=9 Tax=Gammaproteobacteria Rep... 79 4e-14 UniRef50_B7UXK3 Ner-like protein n=5 Tax=root RepID=B7UXK3_PSEA8 76 3e-13 UniRef50_D2TY44 Transcriptional regulator, Nlp n=1 Tax=Arsenopho... 75 5e-13 UniRef50_A9D2T0 Putative uncharacterized protein n=1 Tax=Hoeflea... 74 1e-12 UniRef50_B9JYW2 Putative uncharacterized protein n=3 Tax=Rhizobi... 69 4e-11 UniRef50_Q0FYV9 Putative uncharacterized protein n=1 Tax=Fulvima... 69 5e-11 UniRef50_D0D4E3 Conserved domain protein n=1 Tax=Citreicella sp.... 65 8e-10 UniRef50_D0D3V8 Conserved domain protein n=1 Tax=Citreicella sp.... 56 5e-07 UniRef50_D2F169 Putative uncharacterized protein n=1 Tax=Bactero... 53 4e-06 UniRef50_D0Z924 Putative uncharacterized protein n=1 Tax=Edwards... 44 0.002 Sequences not found previously or not previously below threshold: UniRef50_Q6G501 Putative uncharacterized protein n=1 Tax=Bartone... 48 1e-04 UniRef50_Q3IGJ6 Putative uncharacterized protein n=1 Tax=Pseudoa... 47 2e-04 UniRef50_D0J193 Putative uncharacterized protein n=1 Tax=Comamon... 46 5e-04 UniRef50_Q1JVI5 Putative uncharacterized protein n=1 Tax=Desulfu... 45 8e-04 UniRef50_A4EFH3 Putative uncharacterized protein n=1 Tax=Roseoba... 45 0.001 UniRef50_A1WY71 Putative transcriptional regulator n=1 Tax=Halor... 43 0.004 UniRef50_A1RRK6 Transcriptional regulator, XRE family n=3 Tax=Th... 42 0.004 UniRef50_A1WUX0 Diguanylate cyclase/phosphodiesterase with PAS/P... 42 0.006 UniRef50_D1A859 Transcriptional regulator, XRE family n=6 Tax=Ac... 42 0.007 UniRef50_A6FSA5 Putative phage repressor n=2 Tax=Roseobacter sp.... 41 0.007 UniRef50_B8IRJ1 Putative phage repressor n=1 Tax=Methylobacteriu... 41 0.008 UniRef50_Q2CEW8 Probable transcriptional regulator n=1 Tax=Ocean... 41 0.010 UniRef50_C9R3N5 Putative DNA-binding protein (Phage related) n=5... 40 0.018 UniRef50_C8WR32 Transcriptional regulator, XRE family n=2 Tax=Al... 40 0.024 UniRef50_UPI00016A2970 putative prophage repressor n=1 Tax=Burkh... 39 0.037 UniRef50_Q2LQD8 Hypothetical cytosolic protein n=1 Tax=Syntrophu... 38 0.067 UniRef50_D2B3L5 LacI family transcription regulator n=1 Tax=Stre... 38 0.078 UniRef50_C8W039 Putative transcriptional regulator, Nlp n=2 Tax=... 38 0.082 >UniRef50_P0ACH3 Sugar fermentation stimulation protein B n=66 Tax=Enterobacteriaceae RepID=SFSB_ECO57 Length = 92 Score = 131 bits (330), Expect = 6e-30, Method: Composition-based stats. Identities = 92/92 (100%), Positives = 92/92 (100%) Query: 1 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD 60 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD Sbjct: 1 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD 60 Query: 61 PWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK 92 PWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK Sbjct: 61 PWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK 92 >UniRef50_C4X0G5 Regulatory factor of maltose metabolism n=5 Tax=Klebsiella RepID=C4X0G5_KLEPN Length = 118 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 70/84 (83%), Positives = 77/84 (91%) Query: 3 SNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPW 62 FIDWHPADI+AGLRK+GTS+AAESRR+GLSSSTLANAL+RPWPKGE+IIA AL T PW Sbjct: 30 DKFIDWHPADIVAGLRKRGTSLAAESRRHGLSSSTLANALTRPWPKGELIIATALETQPW 89 Query: 63 VIWPSRYHDPQTHEFIDRTQLMRS 86 VIWPSRYHDP THEFIDRTQ+MR Sbjct: 90 VIWPSRYHDPVTHEFIDRTQMMRQ 113 >UniRef50_B7LR55 DNA-binding transcriptional activator of maltose metabolism n=107 Tax=Gammaproteobacteria RepID=B7LR55_ESCF3 Length = 107 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 79/86 (91%), Positives = 83/86 (96%) Query: 1 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD 60 ME+ IDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANAL+RPWPKGE IIAKALGT+ Sbjct: 15 MENKLIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALTRPWPKGEWIIAKALGTE 74 Query: 61 PWVIWPSRYHDPQTHEFIDRTQLMRS 86 PWVIWPSRYHDPQTHEFIDRT+LMRS Sbjct: 75 PWVIWPSRYHDPQTHEFIDRTRLMRS 100 >UniRef50_C5BF99 Sugar fermentation stimulation protein n=30 Tax=Enterobacteriaceae RepID=C5BF99_EDWI9 Length = 94 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 52/86 (60%), Positives = 64/86 (74%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHPA+IIA L K+ ++ SR GLSSSTLANAL+RPWPKGE +IA+AL P IWP Sbjct: 8 DWHPAEIIAALHKRRLTLTQVSRNAGLSSSTLANALTRPWPKGEWLIAEALSIHPSEIWP 67 Query: 67 SRYHDPQTHEFIDRTQLMRSYTKPKK 92 SRY+DP THE +DR +L+R+ KK Sbjct: 68 SRYYDPITHELLDRKRLIRNVASVKK 93 >UniRef50_Q6D9D0 Sugar fermentation stimulation protein n=16 Tax=Enterobacteriaceae RepID=Q6D9D0_ERWCT Length = 87 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 56/82 (68%), Positives = 65/82 (79%) Query: 4 NFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWV 63 DWHPADIIA LRKK T++AA SR GLSSSTLANALSRPWPKGE +IA AL P Sbjct: 4 RKQDWHPADIIAALRKKNTTLAAVSRAAGLSSSTLANALSRPWPKGEWLIADALSIHPSE 63 Query: 64 IWPSRYHDPQTHEFIDRTQLMR 85 IWPSRY++P+T+E IDR +L+R Sbjct: 64 IWPSRYYNPETNELIDRKKLIR 85 >UniRef50_UPI00019F1682 hypothetical protein CATC2_16475 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI00019F1682 Length = 98 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 53/78 (67%) Query: 5 FIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVI 64 DWHPA IIA L K+GTS+AA SR+ GL+SSTLANAL+RP PKGE +IA AL P I Sbjct: 3 KQDWHPAYIIAALHKRGTSLAALSRQAGLASSTLANALTRPCPKGEWLIASALKVHPATI 62 Query: 65 WPSRYHDPQTHEFIDRTQ 82 WP+RY + + Q Sbjct: 63 WPTRYDGQEAYRLPKHPQ 80 >UniRef50_B4ETI1 Phage protein n=47 Tax=Gammaproteobacteria RepID=B4ETI1_PROMH Length = 90 Score = 107 bits (268), Expect = 9e-23, Method: Composition-based stats. Identities = 47/77 (61%), Positives = 57/77 (74%) Query: 6 IDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIW 65 +WHPADIIA L+KKGT++A SR GLSSSTL+NALSRPWPKGE IIAK L P IW Sbjct: 4 KNWHPADIIASLKKKGTTLAEVSRAAGLSSSTLSNALSRPWPKGEQIIAKELDIPPSTIW 63 Query: 66 PSRYHDPQTHEFIDRTQ 82 P RY D + ++ I + + Sbjct: 64 PERYFDEKGNQIIRKLR 80 >UniRef50_A4TP35 DNA-binding protein n=23 Tax=Yersinia RepID=A4TP35_YERPP Length = 81 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 45/72 (62%), Positives = 55/72 (76%) Query: 5 FIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVI 64 DWHPADI+AGL+K+GT+MAA SR++GL+SSTLAN L RPWPKGE +IA+ L P I Sbjct: 3 KQDWHPADILAGLKKRGTTMAALSRKSGLASSTLANTLLRPWPKGERLIAEVLELHPAEI 62 Query: 65 WPSRYHDPQTHE 76 WPSRY P+ Sbjct: 63 WPSRYLKPKKSP 74 >UniRef50_C7BNF2 Sugar fermentation stimulation protein b (Ner-like protein) n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BNF2_PHOAA Length = 109 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 43/71 (60%), Positives = 51/71 (71%) Query: 5 FIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVI 64 DWHPADIIA L+K+GT+++A SR+ GL+SSTL+NAL R WPKGE IIA LG P I Sbjct: 3 KKDWHPADIIAALKKQGTTLSAVSRKAGLASSTLSNALHRQWPKGEAIIATKLGLSPSEI 62 Query: 65 WPSRYHDPQTH 75 WPSRY Sbjct: 63 WPSRYQKKTNS 73 >UniRef50_D0FNK4 Sugar fermentation stimulation protein B n=2 Tax=Erwinia pyrifoliae RepID=D0FNK4_ERWPY Length = 109 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 44/69 (63%), Positives = 51/69 (73%) Query: 4 NFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWV 63 D HPADI+A +K+ TS+AA SR+ GL+S TLANAL RPWPKGE IIA ALG P Sbjct: 3 KRRDMHPADILAAFKKRQTSLAALSRQAGLNSGTLANALKRPWPKGEFIIAAALGVHPSA 62 Query: 64 IWPSRYHDP 72 IWPSRY+D Sbjct: 63 IWPSRYYDS 71 >UniRef50_Q9RG38 Pln n=4 Tax=Enterobacteriaceae RepID=Q9RG38_PHOLU Length = 70 Score = 104 bits (259), Expect = 9e-22, Method: Composition-based stats. Identities = 43/68 (63%), Positives = 49/68 (72%) Query: 4 NFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWV 63 DWH ADIIA L+K+GTS+AA SR GL+SSTL+N L RPWPKGE IIA L +P Sbjct: 3 ERHDWHKADIIAALKKRGTSLAAVSREAGLASSTLSNVLHRPWPKGERIIATILNCEPSE 62 Query: 64 IWPSRYHD 71 IWPSRY Sbjct: 63 IWPSRYFK 70 >UniRef50_A1IT90 Ner-like DNA-binding protein n=4 Tax=Neisseriaceae RepID=A1IT90_NEIMA Length = 87 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 36/72 (50%), Positives = 46/72 (63%) Query: 6 IDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIW 65 +WH ADI+A L+KKG S+ A S GLS +TL +AL+ P+ KGE IIA A+G +P IW Sbjct: 8 KNWHRADIVAALKKKGWSLRALSIEAGLSPNTLRSALAAPYLKGERIIAAAIGVEPEEIW 67 Query: 66 PSRYHDPQTHEF 77 P RY D Sbjct: 68 PERYADRNLKPV 79 >UniRef50_Q322I2 Transcriptional regulatory protein n=8 Tax=Gammaproteobacteria RepID=Q322I2_SHIBS Length = 68 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 46/66 (69%), Positives = 55/66 (83%) Query: 5 FIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVI 64 DWHPADIIAGL+K+GTS++A SR+ GL+SSTLANAL+R WPKGE +IA+ALG P I Sbjct: 3 LQDWHPADIIAGLKKRGTSLSALSRQAGLASSTLANALTRRWPKGERLIAEALGIKPEQI 62 Query: 65 WPSRYH 70 WPSRY Sbjct: 63 WPSRYR 68 >UniRef50_UPI000196E47E sugar fermentation stimulation protein n=1 Tax=Neisseria mucosa ATCC 25996 RepID=UPI000196E47E Length = 87 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 35/71 (49%), Positives = 48/71 (67%) Query: 2 ESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDP 61 ES DWH A+I+A +RK+G ++ A S +GLS++TL +AL +PKGE II+ LG P Sbjct: 16 ESRKQDWHRAEIVAAVRKRGKTITALSIESGLSANTLKSALQFKYPKGERIISDFLGVPP 75 Query: 62 WVIWPSRYHDP 72 IWPSRY + Sbjct: 76 QEIWPSRYPEQ 86 >UniRef50_C0DX46 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DX46_EIKCO Length = 92 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 34/78 (43%), Positives = 46/78 (58%) Query: 4 NFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWV 63 +DWH ADIIA L+K+G S+ A + + + +TL AL +P+PK E +IA ALG P Sbjct: 12 ELLDWHRADIIAALKKRGWSIRALAAQANVHPTTLYGALIKPYPKSERVIADALGMKPEQ 71 Query: 64 IWPSRYHDPQTHEFIDRT 81 IWP RY + RT Sbjct: 72 IWPQRYAARNFQPVLRRT 89 >UniRef50_C9R6S3 Possible DNA-binding protein n=6 Tax=Proteobacteria RepID=C9R6S3_AGGAD Length = 83 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 1 MESNF--IDWHPADIIAGLRKKGTSMAAESRRNGLSS-STLANALSRPWPKGEMIIAKAL 57 ME+ IDWH DI A L KKG S+ S ++G S+ STL NAL RPW KGE IIA+A+ Sbjct: 1 METKKTAIDWHREDIKAALAKKGWSLRQLSLKHGYSNGSTLKNALDRPWLKGERIIAEAI 60 Query: 58 GTDPWVIWPSRYHDPQTHEFIDR 80 G VIW SRY ++ DR Sbjct: 61 GVPAEVIWASRYEQRNLKKYADR 83 >UniRef50_P06020 DNA-binding protein Ner n=7 Tax=root RepID=NER_BPMU Length = 75 Score = 99.6 bits (247), Expect = 2e-20, Method: Composition-based stats. Identities = 41/68 (60%), Positives = 49/68 (72%) Query: 3 SNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPW 62 DWH AD+IAGL+K+ S++A SR+ G + +TLANAL R WPKGE IIA AL T P Sbjct: 5 EKARDWHRADVIAGLKKRKLSLSALSRQFGYAPTTLANALERHWPKGEQIIANALETKPE 64 Query: 63 VIWPSRYH 70 VIWPSRY Sbjct: 65 VIWPSRYQ 72 >UniRef50_P46496 Mu-like prophage FluMu DNA-binding protein Ner n=7 Tax=Pasteurellaceae RepID=NER_HAEIN Length = 89 Score = 98.1 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 44/80 (55%) Query: 2 ESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDP 61 ++ DWH ADI+A L+K G S+ + ++ +S +TL L + +PK E ++A A+G P Sbjct: 9 KTAEQDWHRADILAELKKNGWSLRSLAKEGQVSYNTLKTVLDKSYPKMERLVANAIGVPP 68 Query: 62 WVIWPSRYHDPQTHEFIDRT 81 VIW R+ + + Sbjct: 69 EVIWAGRFAERNKRPTLQHK 88 >UniRef50_B6ISR8 Phage DNA-binding protein Ner, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ISR8_RHOCS Length = 107 Score = 97.7 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Query: 2 ESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDP 61 + WH DI A +RK+GT++ + NGL SST AL+ P GE +IA+ LG Sbjct: 8 KRRPKGWHKEDIKAAIRKRGTTVTDLALSNGLGSSTCRVALNTPCFTGEQVIAEFLGVPA 67 Query: 62 WVIWPSRYHDPQTHEFI---DRTQLMRS 86 V+WP RY T +R + +R+ Sbjct: 68 QVLWPDRYEPDGTPRHPRVRNRLKGIRN 95 >UniRef50_B7UGE4 Predicted DNA-binding protein n=4 Tax=Gammaproteobacteria RepID=B7UGE4_ECO27 Length = 78 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 39/71 (54%) Query: 2 ESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDP 61 E DWH I+A + KG ++ S R GL +L NAL R PK E IIA A+G +P Sbjct: 6 EVMNKDWHREYIVAAVHTKGFTLRELSERAGLKKDSLKNALYRSCPKYERIIADAIGVEP 65 Query: 62 WVIWPSRYHDP 72 IWPSRY Sbjct: 66 AEIWPSRYASK 76 >UniRef50_B8FGN9 Putative transcriptional regulator, Nlp n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGN9_DESAA Length = 90 Score = 95.8 bits (237), Expect = 3e-19, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 40/69 (57%) Query: 6 IDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIW 65 DW+P DI A L K G ++A R+ GL+ T N +P+P+ E IA+ LGT P IW Sbjct: 14 RDWNPWDIKAALGKAGYTLADIGRQEGLAPRTANNVFRKPYPRIERAIAEVLGTVPQAIW 73 Query: 66 PSRYHDPQT 74 P+RY D Sbjct: 74 PTRYDDSGN 82 >UniRef50_Q12EU1 Putative transcriptional regulator, Nlp n=1 Tax=Polaromonas sp. JS666 RepID=Q12EU1_POLSJ Length = 125 Score = 95.8 bits (237), Expect = 3e-19, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 D HPAD+IA L K+GTS+ + NG S + L+ PW E ++AKAL P +WP Sbjct: 14 DMHPADVIAALHKRGTSLRKIALENGYSH--IQRVLTSPWLAAEQLVAKALDAKPEDLWP 71 Query: 67 SRYHDPQTHEFIDRTQLMRSYTKPKK 92 SRY +P + + T P++ Sbjct: 72 SRYLNPADRALAFQQTRKITVTMPRQ 97 >UniRef50_C6E6U5 Putative transcriptional regulator, Nlp n=1 Tax=Geobacter sp. M21 RepID=C6E6U5_GEOSM Length = 103 Score = 95.4 bits (236), Expect = 4e-19, Method: Composition-based stats. Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 6 IDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIW 65 DWHPADI A L K G S A +R NG ++ L R W + E ++AK LG IW Sbjct: 11 QDWHPADIKAALDKAGYSFARIARENGYRLNSPNVVLHRAWSQVEQLVAKILGVQASEIW 70 Query: 66 PSRYHDPQTHEFIDRTQLMRSYTKPKK 92 PSRY D + RT ++ K Sbjct: 71 PSRY-DRRGRPLKSRTARVKQSRTISK 96 >UniRef50_D2NHS6 Phage DNA-binding protein n=5 Tax=Enterobacteriaceae RepID=D2NHS6_ECOLX Length = 89 Score = 95.0 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 33/68 (48%), Positives = 43/68 (63%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 +WH ADI+A L K+G ++A SR +GL+ TL NAL R +P+ E IIA AL T P +WP Sbjct: 18 NWHRADIVAALHKRGLTLALLSRSHGLAPRTLNNALERHYPRAERIIAGALDTTPETLWP 77 Query: 67 SRYHDPQT 74 RY Sbjct: 78 ERYALKNG 85 >UniRef50_A9ICZ3 Mu-like prophage FluMu DNA-binding protein Ner n=5 Tax=Proteobacteria RepID=A9ICZ3_BORPD Length = 100 Score = 93.8 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 2 ESNFIDWHPADIIAGLRKKGTSMAAESRRNGLS-SSTLANALSRPWPKGEMIIAKALGTD 60 ++ DWH ADI A L K G S+ ++ +G S +TL L RPWPKGE IIA A+G Sbjct: 9 KTALKDWHRADIKAALEKAGWSLRRLAKHHGYSSPTTLTIPLMRPWPKGERIIASAIGRS 68 Query: 61 PWVIWPSRYHDPQTHEF 77 P IWPSRY + + Sbjct: 69 PAEIWPSRYIEKYSDPI 85 >UniRef50_B3QCI8 Putative transcriptional regulator, Nlp n=1 Tax=Rhodopseudomonas palustris TIE-1 RepID=B3QCI8_RHOPT Length = 99 Score = 90.0 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 37/86 (43%) Query: 5 FIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVI 64 W I A + +KG ++ +R+ GL S AL R +GE IA+ALG P + Sbjct: 2 RRRWDRHAIKAAVHRKGLTLVGIARKAGLEESACKVALRRRNWRGEAAIAEALGLHPSAL 61 Query: 65 WPSRYHDPQTHEFIDRTQLMRSYTKP 90 WP RY +R + P Sbjct: 62 WPDRYRSSAPIYRRNRNHVRACVASP 87 >UniRef50_Q8X345 Putative DNA-binding protein n=1 Tax=Escherichia coli O157:H7 RepID=Q8X345_ECO57 Length = 82 Score = 90.0 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 35/71 (49%) Query: 2 ESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDP 61 E + DW P I A L G S+ + S + G S +L + L P + IIA ALG P Sbjct: 5 EVSDHDWPPEIIKARLHMAGLSLRSLSLKAGYSRDSLKSVLRTPCRPYQQIIADALGVSP 64 Query: 62 WVIWPSRYHDP 72 IWPSRY Sbjct: 65 EEIWPSRYQVK 75 >UniRef50_C4WG62 Putative uncharacterized protein n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WG62_9RHIZ Length = 133 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 38/83 (45%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 W +I++ LR++ ++A ++ GLS S + N +RP E IA LG V++ Sbjct: 42 WDRHEILSRLRRQKKTLAGIAKDYGLSLSGVKNIWTRPNEPAERAIADVLGVPVEVVFCD 101 Query: 68 RYHDPQTHEFIDRTQLMRSYTKP 90 RY + + S KP Sbjct: 102 RYPKKRNRIHVSEYPSRSSRGKP 124 >UniRef50_A9IV17 Putative uncharacterized protein n=2 Tax=Bartonella tribocorum CIP 105476 RepID=A9IV17_BART1 Length = 150 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%) Query: 3 SNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPW 62 + W I+A LR++ ++A ++ LSSS++ + +RP K E IA +G Sbjct: 55 TTTQKWDRHSILAELRRRNMTLAELAKAYQLSSSSVQHIWTRPNEKAERAIADFIGLPVE 114 Query: 63 VIWPSRYHDPQTHEF 77 ++ RY + F Sbjct: 115 QVFSDRYPKSRRRIF 129 >UniRef50_Q0EWA6 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWA6_9PROT Length = 106 Score = 88.5 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 35/67 (52%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 WH DI A LRK+G + S +G + + L WPK E IIA L +PW IWP Sbjct: 13 WHREDIKAELRKRGWPLVRVSTEHGYARKSAQATLGHSWPKMERIIANILEVEPWEIWPH 72 Query: 68 RYHDPQT 74 RY+D Sbjct: 73 RYNDYGQ 79 >UniRef50_A7IP05 Putative transcriptional regulator, Nlp n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7IP05_XANP2 Length = 112 Score = 88.1 bits (217), Expect = 7e-17, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 39/79 (49%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHP +I + +RK+G+++ SR GL +AL P +GE IA+ L P IWP Sbjct: 19 DWHPEEIKSAVRKRGSTLYDLSRDAGLPEHACRSALRGPNFEGEFAIAEFLSLSPREIWP 78 Query: 67 SRYHDPQTHEFIDRTQLMR 85 SR+ R + Sbjct: 79 SRFRSDGGRIPQVRHRTKA 97 >UniRef50_A4NLS5 Ner-like DNA-binding protein n=2 Tax=Pasteurellaceae RepID=A4NLS5_HAEIN Length = 78 Score = 87.7 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 5 FIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVI 64 DW I+ L ++ ++ + S + GL+ STL NAL +PKGE IIA+A+G + I Sbjct: 3 KKDWSRKRIVYELHERNITLHSLSVKAGLAPSTLKNALRVSYPKGEKIIAEAIGVEASEI 62 Query: 65 WPSRYHDPQTHEFIDRT 81 W +RY + +DRT Sbjct: 63 WVTRYAKRENR-HVDRT 78 >UniRef50_D2TQ31 Prophage transcriptional regulator Ner n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TQ31_CITRO Length = 76 Score = 87.3 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 39/63 (61%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 DWHP I+ +R + SM A +R+ G+ + L NA+ R PK E IIA+ LG P IWP Sbjct: 9 DWHPQRILGEVRAREGSMRALARKAGVGQNNLYNAVYRHVPKYEGIIAECLGVPPEEIWP 68 Query: 67 SRY 69 SRY Sbjct: 69 SRY 71 >UniRef50_C4GJV0 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GJV0_9NEIS Length = 136 Score = 87.3 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%) Query: 4 NFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWV 63 +D HP I A +R +G ++ +R +S ++ AL +P GE IA L Sbjct: 51 KGMDMHPELIRAEIRMRGKTLTDLARLYDVSPKVVSMALKQPSLAGEKAIATFLNKSLHE 110 Query: 64 IWPSRYHDPQTHEFID 79 ++P R+ Sbjct: 111 LFPERWTQDGRRIRPR 126 >UniRef50_C6P2C1 Putative transcriptional regulator, Nlp n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P2C1_9PROT Length = 114 Score = 86.5 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 5 FIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRP-WPKGEMIIAKALGTDPWV 63 DWHPADI A L K G ++A+ + G+ SS+ ++ +P E IA A+G P V Sbjct: 11 DQDWHPADIKAALHKNGITLASIAEVYGMRSSSSLSSTFTRSYPLNEKRIADAIGVHPMV 70 Query: 64 IWPSRYHDPQT 74 IWPSRY+ + Sbjct: 71 IWPSRYNKDGS 81 >UniRef50_A1TUL9 Putative transcriptional regulator, Nlp n=1 Tax=Acidovorax citrulli AAC00-1 RepID=A1TUL9_ACIAC Length = 90 Score = 84.6 bits (208), Expect = 8e-16, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 6 IDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIW 65 DWHPAD+ A L K+G S+ ++ +G S L+ W E I+A ALG IW Sbjct: 12 KDWHPADVKAALEKRGVSLRKLAKTHGYSH--FQRVLTTHWWAAEQIVAAALGLRAEEIW 69 Query: 66 PSRYHDPQTH 75 PSRY + Sbjct: 70 PSRYEVSRER 79 >UniRef50_A0P331 Putative uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P331_9RHOB Length = 103 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 W I A L ++G ++A + ++ ++ ++ +RP K E I++ L T +WP Sbjct: 12 WDKHSIKAELHRQGMTLAKLAELARMTPNSFSHVWTRPVRKAEASISEFLETPLKDLWPD 71 Query: 68 RYHDPQTHEFIDRTQLMRSYTK 89 RY + + +R+ K Sbjct: 72 RYPIRTARILSSKYENLRASQK 93 >UniRef50_A9HP45 Putative sugar fermentation stimulation protein B n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HP45_GLUDA Length = 103 Score = 83.1 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRP--WPKGEMIIAKALGTDPWVIW 65 H DI A LRK+ S+A+ SR+ GL+ + L A+ +P + E IA+ LG P ++ Sbjct: 10 MHVEDIKAELRKRYGSLASISRQLGLNPNALTAAIHKPGNSVRSERRIAELLGKAPHEVF 69 Query: 66 PSRYHDPQT--HEFIDRTQLMR 85 P R+H T +DR R Sbjct: 70 PDRFHKDGTPISRVVDRKPTCR 91 >UniRef50_B2NA08 Putative DNA-binding protein Ner n=3 Tax=Enterobacteriaceae RepID=B2NA08_ECOLX Length = 83 Score = 81.9 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 2 ESNFIDWHPADIIAGLRKKGTS-MAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD 60 E DW I L+ G S S G + +L + P K E +I+ A+G Sbjct: 5 EDRDRDWPSLKIQLALKDNGWSSFRELSLHAGYAQDSLKAVVRTPNKKYERVISDAIGVP 64 Query: 61 PWVIWPSRYHDPQTHEFID 79 P +IWPSRY + Sbjct: 65 PEIIWPSRYRNDGFIRKAS 83 >UniRef50_UPI000190517F hypothetical protein RetlG_31258 n=1 Tax=Rhizobium etli GR56 RepID=UPI000190517F Length = 110 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 33/82 (40%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 W I+A LR+KG ++ + N S +RP E II+ LG ++P Sbjct: 25 WDRHLILAELRRKGMTLTKLAEMNQKSPGGFRTIWTRPNEGNEAIISAFLGVPAAELFPD 84 Query: 68 RYHDPQTHEFIDRTQLMRSYTK 89 RY T ++++ Sbjct: 85 RYPKKTTTILSHEYSSESTHSR 106 >UniRef50_A8I7I4 Putative transcriptional regulator n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8I7I4_AZOC5 Length = 101 Score = 80.4 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 W I A + ++ T++ A + GL S +AL R GE +A LG P IWP Sbjct: 9 WDRHAIRAEVHRRETTLTAIALAAGLDQSACRSALVRRHLAGEKALADFLGIAPEKIWPE 68 Query: 68 RYHDP---QTHEFIDRTQLMRSYTKP 90 RY P R+ ++ P Sbjct: 69 RYAKPSPWAKRILEGRSAASQNGGAP 94 >UniRef50_A9IX71 Putative uncharacterized protein n=2 Tax=Bartonella RepID=A9IX71_BART1 Length = 101 Score = 80.0 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPS 67 W I+A LR++ ++A ++ LSSS++ + +R K E IA +G ++ Sbjct: 11 WDRHSILAELRRRNMTLAELAKAYQLSSSSVQHIWTRSNEKAERAIADFIGLPVEQVFSD 70 Query: 68 RYHDPQTHEF 77 RY + F Sbjct: 71 RYPKSRRRIF 80 >UniRef50_A0PBQ2 Ner-like protein n=9 Tax=Gammaproteobacteria RepID=A0PBQ2_PASPI Length = 90 Score = 79.2 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 10 PADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRY 69 I L+ +G S+AA R++ S ++ AL +P P E IA ALG P IWP RY Sbjct: 17 REWIKYKLKIQGLSLAALGRKHKTSRQVVSTALYKPSPCWEHEIATALGVKPSEIWPERY 76 Query: 70 HDPQTHEFIDRTQ 82 + HE R + Sbjct: 77 --DEEHEIPLRHK 87 >UniRef50_B7UXK3 Ner-like protein n=5 Tax=root RepID=B7UXK3_PSEA8 Length = 118 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 11 ADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYH 70 I LR +G+S+A +R +SS + NA P+P+ E IA L P V+WP R+ Sbjct: 15 EWIKYQLRTRGSSLAEVARSLNVSSPAVKNAKLTPYPRVERAIAAVLNLSPLVLWPERWL 74 Query: 71 DPQT--HEFIDRTQLMRSYTK 89 D + + +R++ +++Y + Sbjct: 75 DEENPKRQRPNRSETLQAYVR 95 >UniRef50_D2TY44 Transcriptional regulator, Nlp n=1 Tax=Arsenophonus nasoniae RepID=D2TY44_9ENTR Length = 76 Score = 75.4 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 1 MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTD 60 M +WH A+I+A ++ ++++ S + GL+S L N L R + E I ++ Sbjct: 1 MLDFSYNWHGANIVAAF-QQNITLSSISHKFGLNSKILNNRLIRIFSSDEKCIIASINLH 59 Query: 61 PWVIWPSRYHDPQT 74 PS Y D Sbjct: 60 QSATLPSYYCDSTK 73 >UniRef50_A9D2T0 Putative uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D2T0_9RHIZ Length = 101 Score = 74.2 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 34/73 (46%) Query: 12 DIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYHD 71 I A L + G ++A R LS+ T N + P +GE IA ALGT P ++WP+RY Sbjct: 17 RIKAKLLEAGLTLAEIDRIYQLSNGTARNTMREPNARGERAIAAALGTRPHLLWPTRYRP 76 Query: 72 PQTHEFIDRTQLM 84 + Sbjct: 77 SGQRRSPQNWTRV 89 >UniRef50_B9JYW2 Putative uncharacterized protein n=3 Tax=Rhizobium/Agrobacterium group RepID=B9JYW2_AGRVS Length = 112 Score = 69.2 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 31/74 (41%) Query: 12 DIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYHD 71 I A L G ++ A R GL T N L + GE IA AL T P ++W SRYH Sbjct: 20 RIKARLNVAGLTLLAIDREYGLPRGTAGNTLQQANLAGERAIAAALKTRPHLLWRSRYHP 79 Query: 72 PQTHEFIDRTQLMR 85 + + Sbjct: 80 DGQRRAPQPPENYQ 93 >UniRef50_Q0FYV9 Putative uncharacterized protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FYV9_9RHIZ Length = 107 Score = 68.8 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWP 66 +W I A + ++G S++ +R L S AL KG IA ALG ++P Sbjct: 11 EWDRHTIKAEVHRRGLSLSGIARDADLPESACRLALMGMNRKGADAIAAALGIPFDTLFP 70 >UniRef50_D0D4E3 Conserved domain protein n=1 Tax=Citreicella sp. SE45 RepID=D0D4E3_9RHOB Length = 80 Score = 64.6 bits (156), Expect = 8e-10, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%) Query: 6 IDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWP--KGEMIIAKALGTDPWV 63 +D H + A LR +GTS+A SR G+S S L R + E +A+A+G P Sbjct: 9 LDAH-ERLKAELRIRGTSLAQISRELGVSDSALTLVGKRMCRSQRIEEALAQAVGMSPEE 67 Query: 64 IWP 66 ++P Sbjct: 68 LFP 70 >UniRef50_D0D3V8 Conserved domain protein n=1 Tax=Citreicella sp. SE45 RepID=D0D3V8_9RHOB Length = 68 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 16 GLRKKGTSMAAESRRNGLSSSTLANALS--RPWPKGEMIIAKALGTDPWVIWPSRYHDPQ 73 LR +G S+A+ +R + ST+ R K E +A A+ P ++P RY + Sbjct: 2 ELRLRGKSIASVARELEVLRSTVTLVSQGLRRSLKIERALADAVEKTPAELFPDRYPAEE 61 Query: 74 TH 75 Sbjct: 62 DS 63 >UniRef50_D2F169 Putative uncharacterized protein n=1 Tax=Bacteroides sp. D20 RepID=D2F169_9BACE Length = 92 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Query: 18 RKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMI--IAKALGTDPWVIW 65 + +G ++ + + G++ STLAN LS+ P E + IA ALG + ++ Sbjct: 10 KMQGITLQELADKMGVARSTLANTLSKGNPTIETLSKIADALGVEVTDLF 59 >UniRef50_Q6G501 Putative uncharacterized protein n=1 Tax=Bartonella henselae RepID=Q6G501_BARHE Length = 99 Score = 48.0 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 26/76 (34%) Query: 9 HPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMIIAKALGTDPWVIWPSR 68 ++A L + ++ + SST+ N + P K + +A G I+ Sbjct: 8 DRHSVLAKLCHRNITLTKRIETYQIVSSTVKNIWTHPNEKTKHALANLSGLHAKPIFVDC 67 Query: 69 YHDPQTHEFIDRTQLM 84 Y + L+ Sbjct: 68 YFESCNRISKLAKHLL 83 >UniRef50_Q3IGJ6 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3IGJ6_PSEHT Length = 93 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPK--GEMIIAKALGTDPWVIW 65 + +I A + KKG ++A + S +++ + R IAKA+ ++ Sbjct: 1 MNHEEIKAAIYKKGYTLAMVAECINKHPSHISSIIHRRNTSSVIANAIAKAIDMPVEQVF 60 Query: 66 PS 67 P Sbjct: 61 PD 62 >UniRef50_D0J193 Putative uncharacterized protein n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J193_COMTE Length = 86 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRP--WPKGEMIIAKALGTDPWVIW 65 HP I A LR KG S A + +++S+++ +S + IA+ G ++W Sbjct: 1 MHPEQIKAALRMKGISPTALASEMRVANSSVSQVISGRAVSARIRQRIAEITGMPVDMLW 60 Query: 66 P 66 P Sbjct: 61 P 61 >UniRef50_Q1JVI5 Putative uncharacterized protein n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JVI5_DESAC Length = 90 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 2/80 (2%) Query: 10 PADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWP--KGEMIIAKALGTDPWVIWPS 67 P +I L +K A +R +S S + + + + IA +G ++P Sbjct: 11 PLEIKIALMRKNCLQADIARTCEVSRSHVNRVIQGNVVSDRVQRQIASEIGYPVEEVFPD 70 Query: 68 RYHDPQTHEFIDRTQLMRSY 87 RY + + + Sbjct: 71 RYPASGPGPRVQPVEHRAAS 90 >UniRef50_A4EFH3 Putative uncharacterized protein n=1 Tax=Roseobacter sp. CCS2 RepID=A4EFH3_9RHOB Length = 54 Score = 44.5 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 27 ESRRNGLSSSTLANALSRPWP--KGEMIIAKALGTDPWVIWPSRYHDPQT 74 SR GL+ ST++ + + IA LG P +WP RY + Sbjct: 1 MSRSLGLAQSTVSVVSMGHGRSHRIQEAIASELGKTPEELWPKRYRTKEG 50 >UniRef50_D0Z924 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0Z924_EDWTE Length = 38 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 21/33 (63%) Query: 42 LSRPWPKGEMIIAKALGTDPWVIWPSRYHDPQT 74 + R +P+ E +IA+AL P IWP RY + +T Sbjct: 1 MERHYPRAERLIAQALDMRPEDIWPQRYRNKKT 33 >UniRef50_A1WY71 Putative transcriptional regulator n=1 Tax=Halorhodospira halophila SL1 RepID=A1WY71_HALHL Length = 227 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 13 IIAGLRKKGTSMAAESRRNGLSSSTLANALS-RPWPKGEMI--IAKALGTDPWVIWPSRY 69 I R++G +A +RR G+S L +A +P I IA AL P + + Sbjct: 9 IRKTARERGLPLAELARRAGMSRQALYDAWQPGRYPSMSTIVRIANALEVHPLALLEPMF 68 Query: 70 HDPQT 74 + Sbjct: 69 RNDSN 73 >UniRef50_A1RRK6 Transcriptional regulator, XRE family n=3 Tax=Thermoprotei RepID=A1RRK6_PYRIL Length = 516 Score = 42.2 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Query: 14 IAGLRKK-GTSMAAESRRNGLSSSTL---ANALSRPWPKGEMIIAKALGTDPWVI 64 ++ LR++ G S++ +R G+S STL N P IA ALG + Sbjct: 9 LSELRRRKGLSLSRLARLAGVSKSTLWEIENDKISPSINTLWAIANALGVPFGEL 63 >UniRef50_A1WUX0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Halorhodospira halophila SL1 RepID=A1WUX0_HALHL Length = 646 Score = 42.2 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Query: 13 IIAGLRKKGTSMAAESRRNGLSSSTLANALSR---PWPKGEMIIAKALGTDPWVIWPSRY 69 I ++G S+A +RR G+S +L + SR P + +A+ LG P + ++ Sbjct: 9 IRRRANEQGLSLAEVARRAGMSRQSLYDCWSRDGYPNLATIVELAEVLGVHPLRLLELQF 68 Query: 70 HDPQTHEFIDRTQLMR 85 D E D +R Sbjct: 69 PDDGAAE--DHCHTLR 82 >UniRef50_D1A859 Transcriptional regulator, XRE family n=6 Tax=Actinomycetales RepID=D1A859_THECD Length = 247 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSR---PWPKGEMIIAKALGTDPWVI 64 + A L ++G + AA + G+ T+ +++ P+ + +A LG D + Sbjct: 1 MPNERLRAALLERGLTAAALAEAIGVDPKTVERWITKGRTPYRRHRFAVASQLGVDETYL 60 Query: 65 WPS 67 WP Sbjct: 61 WPE 63 >UniRef50_A6FSA5 Putative phage repressor n=2 Tax=Roseobacter sp. AzwK-3b RepID=A6FSA5_9RHOB Length = 220 Score = 41.5 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Query: 10 PADIIAGLRKKGTSMAAESRRNGLSSSTLANALSR--PWPKGEMI--IAKALGTDPWVIW 65 + II+ L ++ S+A +R+ G+ + + E IA+ALG D + Sbjct: 7 RSKIISELERQNVSVAEIARKAGVPYDAVRDIKRGKVQSTSWERAVKIAQALGIDLEDVS 66 Query: 66 P 66 P Sbjct: 67 P 67 >UniRef50_B8IRJ1 Putative phage repressor n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IRJ1_METNO Length = 246 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 7 DWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGEMII--AKALGTDPWVI 64 +W I ++++G + S GL + + +AL R K E +I A LG P I Sbjct: 27 EW-RQLIADEIKRQGRDLKEVSLSAGLGETYVRDALKRGRGKLENLIRVASVLGKPPEWI 85 Query: 65 WPSRYHDPQTH 75 S P T Sbjct: 86 TTSSKTKPGTR 96 >UniRef50_Q2CEW8 Probable transcriptional regulator n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CEW8_9RHOB Length = 202 Score = 41.1 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 7/75 (9%) Query: 13 IIAGLRK----KGTSMAAESRRNGLSSSTLANA---LSRPWPKGEMIIAKALGTDPWVIW 65 I A LR+ +G ++ + GLS+ ++ A ++ P IA+ LG I Sbjct: 16 IGAALRRYRKSQGMTLRDVAEGAGLSTGFISQAERDIAVPSLSSLRKIAQVLGVSLQDIL 75 Query: 66 PSRYHDPQTHEFIDR 80 P + +R Sbjct: 76 PETVPAMEASRRSER 90 >UniRef50_C9R3N5 Putative DNA-binding protein (Phage related) n=5 Tax=Pasteurellaceae RepID=C9R3N5_AGGAD Length = 88 Score = 40.3 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALS--RPWPKGEMIIAKALGTDPWVIW 65 + +I L+ K + + + G+S ++NA+ + + IA A+ +++ Sbjct: 1 MNQKEIYQALKNKNLNASMIAEALGVSYQAVSNAIKQGKSSERIAKAIALAIDQPLEIVF 60 Query: 66 PSRYHDPQTHEFIDRT 81 P Q F + Sbjct: 61 PHYVQKKQKQIFRKKK 76 >UniRef50_C8WR32 Transcriptional regulator, XRE family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WR32_ALIAD Length = 218 Score = 39.9 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 11 ADIIAGLRKKGTSMAAESRRNGLSSSTLANAL---SRPWPKGEMIIAKALGTDPWVI 64 + + LR++ SM + G+S ST++ + R IA ALG P + Sbjct: 7 ETVKSLLRRRSMSMRQLATATGISVSTISKMIAGKQRVNLDYLRRIADALGVPPLTL 63 >UniRef50_UPI00016A2970 putative prophage repressor n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A2970 Length = 201 Score = 39.1 bits (90), Expect = 0.037, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Query: 11 ADIIAGLRKKGTSMAAESRRNGLSSSTLANALS--RPWPKGE--MIIAKALGTD 60 A I A ++++G S A +R+ G+S +TL+ LS P+ M IA ALGT Sbjct: 12 ARIRALMQRQGLSDADLARKTGVSPATLSRVLSMATEDPRISTVMAIADALGTT 65 >UniRef50_Q2LQD8 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQD8_SYNAS Length = 72 Score = 38.4 bits (88), Expect = 0.067, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%) Query: 8 WHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSR----PWPKGEMIIAKALGTDPWV 63 P I A L ++G +R ++ + ++ + + K IAK LG Sbjct: 1 MKPNQIKAALAERGIRQREIARECSVTDTQVSRVIKQCDFIVSTKVAKAIAKRLGMPLEK 60 Query: 64 IWPSRYHDPQT 74 ++P+ Q Sbjct: 61 VFPAYRPKKQA 71 >UniRef50_D2B3L5 LacI family transcription regulator n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B3L5_STRRD Length = 342 Score = 38.4 bits (88), Expect = 0.078, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 15/80 (18%) Query: 18 RKKGTSMAAESRRNGLSSSTLANALSRPWP-KGEMI-----IAKALGTDPWVIWPSRYHD 71 R +G ++ +R G+S T++NAL+ P+ K E + + + LG P D Sbjct: 7 RGRGVTIEDVARAAGVSRQTVSNALNAPYRLKAETLERVTTLIEELGYRP---------D 57 Query: 72 PQTHEFIDRTQLMRSYTKPK 91 T+ + +Y P+ Sbjct: 58 QSARSLRSGTRRIIAYPTPE 77 >UniRef50_C8W039 Putative transcriptional regulator, Nlp n=2 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W039_DESAS Length = 73 Score = 38.4 bits (88), Expect = 0.082, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 10 PADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWP-KGEMI---IAKALGTDPWVIW 65 P +I A + KG + ++ G++ + + +A++ +G I IA+A+G IW Sbjct: 9 PREIRALMVLKGIKIVDIAKEAGVTPAYVHHAINSTGRNRGYRIRPYIAEAIGKTVKEIW 68 Query: 66 PS 67 P Sbjct: 69 PD 70 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.306 0.146 0.423 Lambda K H 0.267 0.0447 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 558,338,338 Number of Sequences: 3077464 Number of extensions: 20435870 Number of successful extensions: 75262 Number of sequences better than 1.0e-01: 75 Number of HSP's better than 0.1 without gapping: 137 Number of HSP's successfully gapped in prelim test: 38 Number of HSP's that attempted gapping in prelim test: 75082 Number of HSP's gapped (non-prelim): 176 length of query: 92 length of database: 1,040,396,356 effective HSP length: 62 effective length of query: 30 effective length of database: 849,593,588 effective search space: 25487807640 effective search space used: 25487807640 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 87 (38.0 bits)