Phyre 2 alignment of P39874 with c3o3cD_

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Job Description | P39874
Confidence | 38.04% | Date | Thu Jan 5 12:01:07 GMT 2012
Rank | 36 | Aligned Residues | 52
% Identity | 12% | Template | c3o3cD_
PDB info | PDB header:transferase | Chain: D: PDB Molecule:glycogen [starch] synthase isoform 2; | PDBTitle: glycogen synthase basal state udp complex
Resolution | 3.51 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 146 | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | T | C | Y | D | L | R | F | P | E | L | A | L | A | Q | A | L | Q | G | A | E | I | L | V | L | P | A | A | W | V | R | G | P | L | K | E | H | H | W | S | T | L | L | A | A | R | A | L | D | T | T | C | Y | M | V | A | A | G | E | C | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | N | A | N | N | P | I | L | G | L | D | Y | D | E | F | V | R | G | C | H | L | G | V | F | P | S | Y | Y | . | . | E | P | W | G | Y | T | P | A | E | . | . | . | . | . | . | C | T | V | M | G | V | P | S | I | T | T | N | V | S | G
Template Known Secondary structure |  |  |  | T | T |  | S | S |  |  |  |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  | S | S | . | . | B | S | S |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  | T | T |  |  |  |  |  |  | S | S | B |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 481 | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . |  |  | . | 510 | . | . | . | . | . | . | . |  |  |  |  |  |  | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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