09/01/2012 12:35:24 : INFO  : Run start: Mon Jan  9 12:35:23 GMT 2012
09/01/2012 12:35:26 : INFO  : Initialised job
09/01/2012 12:35:27 : INFO  : Renaming log file 'phyre2_20120109_123523.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/f6ffc3840b002ca6/phyre_20120109_123523.log'
09/01/2012 12:35:28 : INFO  : Initialised job:
Sequence
>batch____
MLVAAGQFAVTSVWEKNAEICASLMAQAAENDASLFALPEALLARDDHDADLSVKSAQLL
EGEFLGRLRRESKRNMMTTILTIHVPSTPGRAWNMLVALQAGNIVARYAKLHLYDAFAIQ
ESRRVDAGNEIAPLLEVEGMKVGLMTCYDLRFPELALAQALQGAEILVLPAAWVRGPLKE
HHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPFGVTIAAASEMPALIMAEVTPER
VRQVRAQLPVLNNRRFAPPQLL

09/01/2012 12:35:28 : INFO  : Checked sequence
09/01/2012 12:35:29 : INFO  : Finding homologues with PSI-BLAST
09/01/2012 12:35:29 : INFO  : PSI-BLAST 3 iterations
09/01/2012 12:37:20 : INFO  : PSI-BLAST 5 iterations
09/01/2012 12:39:34 : INFO  : Finished PSI-BLAST
09/01/2012 12:39:34 : INFO  : Running Buildali to generate a3m file
09/01/2012 12:56:17 : INFO  : Converting to HMM
09/01/2012 12:56:20 : INFO  : Calibrating HMM
09/01/2012 12:56:27 : INFO  : Searching HMM database
09/01/2012 13:01:14 : INFO  : Finished buildali
09/01/2012 13:01:14 : INFO  : Predicting secondary structure
09/01/2012 13:01:17 : INFO  : Predicted secondary structure (PSI-Pred)
09/01/2012 13:01:17 : INFO  : Predicting Disordered regions
09/01/2012 13:01:18 : INFO  : Predicted Disorder (Disopred)
09/01/2012 13:01:19 : INFO  : Running memsat_svm check
09/01/2012 13:05:36 : INFO  : Globular protein
09/01/2012 13:05:37 : INFO  : Predicted Transmembrane (memsat_svm) ID 'f6ffc3840b002ca6'
09/01/2012 13:05:38 : INFO  : Initialising fold library search
09/01/2012 13:05:39 : INFO  : Initialised search input
09/01/2012 13:05:40 : INFO  : Building Ensemble models
09/01/2012 13:05:42 : INFO  : Building hh.c1emsB_.model.1.pdb
09/01/2012 13:05:53 : INFO  : Building hh.c2vhiG_.model.2.pdb
09/01/2012 13:05:58 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f6ffc3840b002ca6/hh.c2vhiG_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f6ffc3840b002ca6/c2vhiG_.2.pdb
09/01/2012 13:06:00 : INFO  : Building hh.c2w1vA_.model.3.pdb
09/01/2012 13:06:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f6ffc3840b002ca6/hh.c2w1vA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f6ffc3840b002ca6/c2w1vA_.3.pdb
09/01/2012 13:06:10 : INFO  : Building hh.d1uf5a_.model.4.pdb
09/01/2012 13:06:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f6ffc3840b002ca6/hh.d1uf5a_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f6ffc3840b002ca6/d1uf5a_.4.pdb
09/01/2012 13:06:17 : INFO  : Building hh.c2plqA_.model.5.pdb
09/01/2012 13:06:21 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f6ffc3840b002ca6/hh.c2plqA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f6ffc3840b002ca6/c2plqA_.6.pdb
09/01/2012 13:06:23 : INFO  : Building hh.d1emsa2.model.6.pdb
09/01/2012 13:06:28 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f6ffc3840b002ca6/hh.d1emsa2.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f6ffc3840b002ca6/d1emsa2.7.pdb
09/01/2012 13:06:30 : INFO  : Building c1emsB_.1.pdb
09/01/2012 13:06:36 : INFO  : Building c2vhiG_.2.pdb
09/01/2012 13:06:42 : INFO  : Building c2w1vA_.3.pdb
09/01/2012 13:06:47 : INFO  : Building d1uf5a_.4.pdb
09/01/2012 13:06:53 : INFO  : Building c2e2kC_.5.pdb
09/01/2012 13:06:58 : INFO  : Building c2plqA_.6.pdb
09/01/2012 13:07:03 : INFO  : Building d1emsa2.7.pdb
09/01/2012 13:07:09 : INFO  : Building c3dlaD_.8.pdb
09/01/2012 13:07:16 : INFO  : Building c2e11B_.9.pdb
09/01/2012 13:07:22 : INFO  : Building d1f89a_.10.pdb
09/01/2012 13:07:27 : INFO  : Building d1j31a_.11.pdb
09/01/2012 13:07:32 : INFO  : Building c3hkxA_.12.pdb
09/01/2012 13:07:38 : INFO  : Building c3n05B_.13.pdb
09/01/2012 13:07:43 : INFO  : Building c3ilvA_.14.pdb
09/01/2012 13:07:49 : INFO  : Building c3qxbB_.15.pdb
09/01/2012 13:07:55 : INFO  : Building c2hk1D_.16.pdb
09/01/2012 13:08:02 : INFO  : Building d1o60a_.17.pdb
09/01/2012 13:08:09 : INFO  : Building d1s3la_.18.pdb
09/01/2012 13:08:16 : INFO  : Building d1d9ea_.19.pdb
09/01/2012 13:08:23 : INFO  : Building c2qw5B_.20.pdb
09/01/2012 13:09:13 : INFO  : Finished HH model building
09/01/2012 13:09:14 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
09/01/2012 13:09:59 : INFO  : html domain output complete ID 'f6ffc3840b002ca6'
09/01/2012 14:15:05 : INFO  : Run end  : Mon Jan  9 14:15:05 GMT 2012
