Phyre 2 alignment of P0AER8 with c2xzmE_

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Job Description | P0AER8
Confidence | 2.42% | Date | Thu Jan 5 11:24:03 GMT 2012
Rank | 83 | Aligned Residues | 17
% Identity | 59% | Template | c2xzmE_
PDB info | PDB header:ribosome | Chain: E: PDB Molecule:ribosomal protein s5 containing protein; | PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
Resolution | 3.93 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 341 | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | 350 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query Sequence |  | G | H | C | G | F | G | L | G | . | . | . | . | . | . | . | . | . | . | . | A | T | P | T | A | I | A | N | M
Query Conservation |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | H | I | G | L | G | W | K | V | A | K | E | V | Q | G | A | I | K | G | A | I | T | H | A | K | L | N | M
Template Known Secondary structure |  | T |  |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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