Phyre 2 alignment of P0AER8 with d1e9yb2

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Job Description | P0AER8
Confidence | 24.95% | Date | Thu Jan 5 11:24:03 GMT 2012
Rank | 3 | Aligned Residues | 30
% Identity | 33% | Template | d1e9yb2
SCOP info | TIM beta/alpha-barrel | Metallo-dependent hydrolases | alpha-subunit of urease, catalytic domain
Resolution | 3.00

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 335 | . | . | . | . | 340 | . | . | . | . | . | . | . |  |  |  |  | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | A | V | L | A | A | G | H | C | G | F | G | L | . | . | . | . | G | A | T | P | T | A | I | A | N | M | Q | A | I | T | E | R | F | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | D | Q | I | E | A | G | A | I | G | F | . | I | H | E | D | W | G | T | T | P | S | A | I | N | H | A | L | D | V | A | D | K | Y | D
Template Known Secondary structure |  |  |  |  |  |  | T | T |  | S | B |  | . |  |  | G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 208 | . | 210 | . | . | . | . | . | . | . | . |  | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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