BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (577 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P28355 Single-stranded-DNA-specific exonuclease recJ n=... 1085 0.0 UniRef50_P39693 Single-stranded-DNA-specific exonuclease recJ n=... 873 0.0 UniRef50_Q2NRF9 Single-stranded-DNA-specific exonuclease n=4 Tax... 853 0.0 UniRef50_B4RXN3 Single-stranded-DNA-specific exonuclease RecJ n=... 617 e-175 UniRef50_Q1LTU5 Single-stranded-DNA-specific exonuclease RecJ n=... 616 e-175 UniRef50_Q5QYV7 Single-stranded DNA-specific exonuclease n=1 Tax... 585 e-165 UniRef50_UPI0000E0E6D4 single-stranded-DNA-specific exonuclease ... 569 e-160 UniRef50_Q8D2B5 RecJ protein n=1 Tax=Wigglesworthia glossinidia ... 560 e-158 UniRef50_B6SE72 RecJ n=2 Tax=Kingella RepID=B6SE72_9NEIS 532 e-149 UniRef50_C0N9A7 Single-stranded-DNA-specific exonuclease RecJ n=... 519 e-145 UniRef50_A4BBM4 Single-stranded-DNA-specific exonuclease RecJ n=... 515 e-144 UniRef50_Q1N0E3 Single-stranded-DNA-specific exonuclease RecJ n=... 512 e-143 UniRef50_C6RPU9 Single-stranded-DNA-specific exonuclease RecJ n=... 494 e-138 UniRef50_A1AWT7 Single-stranded-DNA-specific exonuclease RecJ n=... 486 e-136 UniRef50_Q87EB5 Single-stranded DNA exonuclease n=23 Tax=Bacteri... 484 e-135 UniRef50_Q2YBC4 Exonuclease RecJ n=1 Tax=Nitrosospira multiformi... 474 e-132 UniRef50_A9IQX3 Single-stranded-DNA-specific exonuclease n=163 T... 470 e-131 UniRef50_Q2SXD4 Single-stranded-DNA-specific exonuclease RecJ n=... 462 e-128 UniRef50_Q12ES6 Single-stranded-DNA-specific exonuclease RecJ n=... 462 e-128 UniRef50_B0VNC7 SsDNA exonuclease, 5'--> 3' specific , Mg depend... 461 e-128 UniRef50_Q6F719 SsDNA exonuclease, 5'--> 3' specific , Mg depend... 454 e-126 UniRef50_A5WDK1 Exonuclease RecJ n=3 Tax=Psychrobacter RepID=A5W... 454 e-126 UniRef50_B6BWW7 Single-stranded-DNA-specific exonuclease RecJ n=... 441 e-122 UniRef50_D0KXT7 Single-stranded-DNA-specific exonuclease RecJ n=... 438 e-121 UniRef50_UPI0000E87D07 exodeoxyribonuclease VII, single-stranded... 436 e-120 UniRef50_C6NUA0 Single-stranded-DNA-specific exonuclease recJ n=... 434 e-120 UniRef50_A2SJG6 Exonuclease RecJ n=8 Tax=Proteobacteria RepID=A2... 430 e-119 UniRef50_C6NXH8 Single-stranded-DNA-specific exonuclease recJ n=... 373 e-101 UniRef50_A1U815 Phosphoesterase, RecJ domain protein n=1 Tax=Mar... 331 6e-89 UniRef50_C1SHI0 Exonuclease RecJ n=1 Tax=Denitrovibrio acetiphil... 330 1e-88 UniRef50_A4J2G7 Single-stranded-DNA-specific exonuclease RecJ n=... 330 1e-88 UniRef50_Q3A3C6 Single-stranded-DNA-specific exonuclease RecJ n=... 327 1e-87 UniRef50_B3E2R5 Single-stranded-DNA-specific exonuclease RecJ n=... 320 1e-85 UniRef50_C4V0G0 Possible single-stranded-DNA-specific exonucleas... 316 1e-84 UniRef50_B8CXF2 Single-stranded-DNA-specific exonuclease RecJ n=... 315 4e-84 UniRef50_Q39XC5 RecJ exonuclease n=6 Tax=Desulfuromonadales RepI... 313 2e-83 UniRef50_C6P9C5 Single-stranded-DNA-specific exonuclease RecJ n=... 311 4e-83 UniRef50_B2RMC6 Single-stranded-DNA-specific exonuclease n=53 Ta... 310 7e-83 UniRef50_A7H9Y9 Single-stranded-DNA-specific exonuclease RecJ n=... 309 2e-82 UniRef50_A5EVF0 DNA exonuclease RecJ n=2 Tax=Cardiobacteriaceae ... 308 3e-82 UniRef50_A6TQN7 Single-stranded-DNA-specific exonuclease RecJ n=... 305 2e-81 UniRef50_B2A2F5 Single-stranded-DNA-specific exonuclease RecJ n=... 302 3e-80 UniRef50_C1A4A6 Single-stranded-DNA-specific exonuclease n=1 Tax... 302 3e-80 UniRef50_A5D3H7 Putative uncharacterized protein n=1 Tax=Pelotom... 300 7e-80 UniRef50_B8FE66 Single-stranded-DNA-specific exonuclease RecJ n=... 300 8e-80 UniRef50_C9KKH1 Single-stranded-DNA-specific exonuclease RecJ n=... 300 9e-80 UniRef50_C0ZAP8 Putative uncharacterized protein n=1 Tax=Breviba... 299 2e-79 UniRef50_A0L8H3 Exonuclease RecJ n=2 Tax=Proteobacteria RepID=A0... 299 2e-79 UniRef50_UPI0001789928 single-stranded-DNA-specific exonuclease ... 297 7e-79 UniRef50_A6NR30 Putative uncharacterized protein n=1 Tax=Bactero... 297 8e-79 UniRef50_C8VZX5 Single-stranded-DNA-specific exonuclease RecJ n=... 296 2e-78 UniRef50_Q2LTE9 Single-stranded DNA-specific exonuclease n=1 Tax... 295 3e-78 UniRef50_A8VTW9 Holliday junction DNA helicase RuvB n=2 Tax=Baci... 295 3e-78 UniRef50_B1HV84 Single-stranded-DNA-specific exonuclease recJ n=... 294 7e-78 UniRef50_C6XU81 Single-stranded-DNA-specific exonuclease RecJ n=... 293 1e-77 UniRef50_C6D7X7 Single-stranded-DNA-specific exonuclease RecJ n=... 291 5e-77 UniRef50_A4XHU1 Single-stranded-DNA-specific exonuclease RecJ n=... 290 8e-77 UniRef50_Q3A9Z7 Single-stranded DNA-specific exonuclease RecJ n=... 290 1e-76 UniRef50_C0QDK3 RecJ n=1 Tax=Desulfobacterium autotrophicum HRM2... 290 1e-76 UniRef50_Q67LM2 Single-strand DNA-specific exonuclease n=1 Tax=S... 289 2e-76 UniRef50_B0K968 Single-stranded-DNA-specific exonuclease RecJ n=... 286 1e-75 UniRef50_Q2S0E3 Single-stranded-DNA-specific exonuclease RecJ n=... 286 1e-75 UniRef50_D2QL07 Single-stranded-DNA-specific exonuclease RecJ n=... 285 4e-75 UniRef50_Q183I1 Putative single-stranded-DNA-specific exonucleas... 285 5e-75 UniRef50_D0MFV1 Single-stranded-DNA-specific exonuclease RecJ n=... 283 2e-74 UniRef50_Q1NUV0 RecJ exonuclease n=2 Tax=delta proteobacterium M... 280 9e-74 UniRef50_Q2RRN7 RecJ exonuclease n=3 Tax=Alphaproteobacteria Rep... 280 1e-73 UniRef50_B0P091 Putative uncharacterized protein n=4 Tax=Clostri... 280 1e-73 UniRef50_Q11NW2 Single-strand DNA specific exonuclease n=13 Tax=... 280 1e-73 UniRef50_B2GBD3 Single-strand DNA-specific exonuclease n=21 Tax=... 280 1e-73 UniRef50_Q02C20 Single-stranded-DNA-specific exonuclease RecJ n=... 280 2e-73 UniRef50_A4SDH3 Single-stranded-DNA-specific exonuclease RecJ n=... 279 2e-73 UniRef50_UPI0001694BF0 YrvE n=1 Tax=Paenibacillus larvae subsp. ... 278 4e-73 UniRef50_Q0AYS8 Single-stranded DNA-specific exonuclease-like pr... 278 5e-73 UniRef50_B8FQU1 Single-stranded-DNA-specific exonuclease RecJ n=... 276 1e-72 UniRef50_A8ZTX7 Single-stranded-DNA-specific exonuclease RecJ n=... 276 1e-72 UniRef50_C5CED3 Single-stranded-DNA-specific exonuclease RecJ n=... 276 2e-72 UniRef50_A5UUU1 Single-stranded-DNA-specific exonuclease RecJ n=... 275 3e-72 UniRef50_D0RNX1 Single-stranded-DNA-specific exonuclease RecJ n=... 275 3e-72 UniRef50_C8WZW9 Single-stranded-DNA-specific exonuclease RecJ n=... 275 4e-72 UniRef50_C8QX81 Single-stranded-DNA-specific exonuclease RecJ n=... 275 4e-72 UniRef50_C6IZW2 Single-stranded-DNA-specific exonuclease RecJ n=... 274 8e-72 UniRef50_C6X239 Single-stranded-DNA-specific exonuclease recJ n=... 273 9e-72 UniRef50_UPI00016BFB11 single-stranded-DNA-specific exonuclease ... 273 1e-71 UniRef50_A3DF49 Single-stranded-DNA-specific exonuclease RecJ n=... 273 1e-71 UniRef50_A6BZD1 Single-strand DNA-specific exonuclease n=2 Tax=P... 272 3e-71 UniRef50_C4GBT7 Putative uncharacterized protein n=1 Tax=Shuttle... 271 3e-71 UniRef50_Q8EPR4 Single-strand DNA-specific exonuclease n=1 Tax=O... 271 5e-71 UniRef50_A8YVP8 Single-stranded-DNA-specific exonuclease n=6 Tax... 271 7e-71 UniRef50_A1HMM2 Single-stranded-DNA-specific exonuclease RecJ n=... 270 1e-70 UniRef50_B7K3K2 Single-stranded-DNA-specific exonuclease RecJ n=... 270 1e-70 UniRef50_A7VWX6 Putative uncharacterized protein n=1 Tax=Clostri... 270 1e-70 UniRef50_C7RHH6 Single-stranded-DNA-specific exonuclease RecJ n=... 269 2e-70 UniRef50_Q1IIX8 Single-stranded-DNA-specific exonuclease RecJ n=... 269 2e-70 UniRef50_D2MJC9 Single-stranded-DNA-specific exonuclease RecJ n=... 269 2e-70 UniRef50_D1AWA1 Single-stranded-DNA-specific exonuclease RecJ n=... 268 3e-70 UniRef50_B0VEZ1 Putative ssDNA exonuclease, 5'--> 3'-specific n=... 268 3e-70 UniRef50_A3DBX0 Single-stranded-DNA-specific exonuclease RecJ n=... 268 4e-70 UniRef50_A9B300 Single-stranded-DNA-specific exonuclease RecJ n=... 268 5e-70 UniRef50_C5EEP4 Putative uncharacterized protein n=1 Tax=Clostri... 268 6e-70 UniRef50_A8SGF1 Putative uncharacterized protein n=1 Tax=Faecali... 267 8e-70 UniRef50_B0TAW1 Single-stranded-DNA-specific exonuclease recj n=... 266 1e-69 UniRef50_C4G696 Putative uncharacterized protein n=1 Tax=Abiotro... 266 1e-69 UniRef50_C6V5J7 Single-stranded-DNA-specific exonuclease RecJ n=... 266 2e-69 UniRef50_A8MGN3 Single-stranded-DNA-specific exonuclease RecJ n=... 266 2e-69 UniRef50_A7HJW8 Single-stranded-DNA-specific exonuclease RecJ n=... 266 2e-69 UniRef50_A9IVX3 Single-stranded-DNA-specific exonuclease n=3 Tax... 266 2e-69 UniRef50_C7NEA4 Single-stranded-DNA-specific exonuclease RecJ n=... 265 3e-69 UniRef50_C7H6M6 Single-stranded-DNA-specific exonuclease RecJ n=... 265 3e-69 UniRef50_B0PEB7 Putative uncharacterized protein n=1 Tax=Anaerot... 265 4e-69 UniRef50_B9E712 Putative uncharacterized protein n=1 Tax=Macroco... 264 5e-69 UniRef50_C6LAA7 Single-stranded-DNA-specific exonuclease RecJ n=... 264 6e-69 UniRef50_Q1GEL8 Single-stranded-DNA-specific exonuclease RecJ n=... 264 7e-69 UniRef50_C5NYP0 Single-stranded-DNA-specific exonuclease RecJ n=... 264 7e-69 UniRef50_B7AQW7 Putative uncharacterized protein n=1 Tax=Bactero... 264 8e-69 UniRef50_C0EW92 Putative uncharacterized protein n=2 Tax=Clostri... 264 9e-69 UniRef50_B1C9H3 Putative uncharacterized protein n=1 Tax=Anaerof... 263 1e-68 UniRef50_O32044 Single-stranded-DNA-specific exonuclease recJ n=... 262 2e-68 UniRef50_Q3MAJ6 Exonuclease RecJ n=6 Tax=Cyanobacteria RepID=Q3M... 262 3e-68 UniRef50_C2M9T5 Single-stranded-DNA-specific exonuclease RecJ n=... 261 4e-68 UniRef50_C9LKW7 Single-stranded-DNA-specific exonuclease RecJ n=... 261 4e-68 UniRef50_Q7U6Y0 Possible single-stranded-DNA-specific exonucleas... 261 5e-68 UniRef50_A1VF80 Single-stranded-DNA-specific exonuclease RecJ n=... 261 6e-68 UniRef50_D2LJ47 Single-stranded-DNA-specific exonuclease RecJ n=... 261 6e-68 UniRef50_Q03F38 Exonuclease RecJ n=3 Tax=Lactobacillales RepID=Q... 261 6e-68 UniRef50_Q2YT94 Single-strand DNA-specific exonuclease n=60 Tax=... 260 1e-67 UniRef50_B9XN50 Single-stranded-DNA-specific exonuclease RecJ n=... 260 1e-67 UniRef50_UPI0001C37215 single-stranded-DNA-specific exonuclease ... 259 1e-67 UniRef50_D1BND6 Single-stranded-DNA-specific exonuclease RecJ n=... 259 2e-67 UniRef50_Q7MAI2 PUTATIVE SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEAS... 259 2e-67 UniRef50_C6JNX8 Single-stranded-DNA-specific exonuclease recJ n=... 259 3e-67 UniRef50_Q26GN0 Single-stranded DNA-specific exonuclease n=7 Tax... 258 3e-67 UniRef50_D1VS52 Single-stranded-DNA-specific exonuclease RecJ n=... 258 4e-67 UniRef50_C3CT94 Single-stranded-DNA-specific exonuclease recj n=... 258 4e-67 UniRef50_A9KLD3 Single-stranded-DNA-specific exonuclease RecJ n=... 258 5e-67 UniRef50_Q1WT52 Single-stranded-DNA-specific exonuclease n=5 Tax... 258 6e-67 UniRef50_Q038P0 Exonuclease RecJ n=8 Tax=Lactobacillus RepID=Q03... 257 7e-67 UniRef50_Q137L0 Exonuclease RecJ n=91 Tax=Alphaproteobacteria Re... 256 1e-66 UniRef50_UPI0001BC5E35 single-stranded-DNA-specific exonuclease ... 256 2e-66 UniRef50_Q049X0 Exonuclease RecJ n=22 Tax=Lactobacillus RepID=Q0... 256 2e-66 UniRef50_B1YJG2 Single-stranded-DNA-specific exonuclease RecJ n=... 255 3e-66 UniRef50_A8EWZ8 Single-stranded DNA-specific exonuclease n=1 Tax... 254 5e-66 UniRef50_D2RLC4 Single-stranded-DNA-specific exonuclease RecJ n=... 254 5e-66 UniRef50_A5MZ56 RecJ n=30 Tax=Clostridium RepID=A5MZ56_CLOK5 254 6e-66 UniRef50_C8WA12 Single-stranded-DNA-specific exonuclease RecJ n=... 254 7e-66 UniRef50_A8SN06 Putative uncharacterized protein n=1 Tax=Parvimo... 254 8e-66 UniRef50_C5B4H2 Single-stranded-DNA-specific exonuclease protein... 254 9e-66 UniRef50_Q1QT56 Exonuclease RecJ n=1 Tax=Chromohalobacter salexi... 253 1e-65 UniRef50_C5RPJ0 Single-stranded-DNA-specific exonuclease RecJ n=... 253 1e-65 UniRef50_Q0C0S5 Single-stranded-DNA-specific exonuclease RecJ n=... 253 1e-65 UniRef50_Q5FGN3 Single-stranded-DNA-specific exonuclease recJ n=... 253 2e-65 UniRef50_D1N562 Single-stranded-DNA-specific exonuclease RecJ n=... 252 2e-65 UniRef50_A6LJS2 Single-stranded-DNA-specific exonuclease RecJ n=... 252 3e-65 UniRef50_C5QT22 Recombination protein RecJ n=2 Tax=Staphylococcu... 252 3e-65 UniRef50_C3WCZ7 Single-stranded-DNA-specific exonuclease recJ n=... 251 4e-65 UniRef50_B0NCG3 Putative uncharacterized protein n=9 Tax=Clostri... 251 5e-65 UniRef50_C8NEZ1 Single-stranded-DNA-specific exonuclease RecJ n=... 251 5e-65 UniRef50_B9L7S0 Single-stranded-DNA-specific exonuclease RecJ n=... 251 8e-65 UniRef50_C7XTQ6 Single-stranded-DNA-specific exonuclease RecJ n=... 250 1e-64 UniRef50_Q5HNR5 Single-stranded-DNA-specific exonuclease RecJ n=... 250 1e-64 UniRef50_B5ZFU4 Single-stranded-DNA-specific exonuclease RecJ n=... 250 1e-64 UniRef50_C6XKA3 Single-stranded-DNA-specific exonuclease RecJ n=... 249 2e-64 UniRef50_B8DHM3 Single-stranded-DNA-specific exonuclease RecJ n=... 249 2e-64 UniRef50_A6Q667 Single-strand DNA-specific exonuclease n=1 Tax=S... 249 2e-64 UniRef50_C5RCA3 Recombination protein J n=1 Tax=Weissella parame... 248 4e-64 UniRef50_C0X5S7 Single-stranded-DNA-specific exonuclease RecJ n=... 248 4e-64 UniRef50_B8HKK4 Single-stranded-DNA-specific exonuclease RecJ n=... 248 5e-64 UniRef50_C6VR18 Single-strand DNA-specific exonuclease RecJ n=6 ... 248 5e-64 UniRef50_A5VFK4 Single-stranded-DNA-specific exonuclease RecJ n=... 248 6e-64 UniRef50_Q03W56 Single-stranded DNA-specific exonuclease n=3 Tax... 248 6e-64 UniRef50_Q1PZA9 Similar to exonuclease RecJ n=1 Tax=Candidatus K... 247 7e-64 UniRef50_D2R2J0 Single-stranded-DNA-specific exonuclease RecJ n=... 247 1e-63 UniRef50_C0GFY2 Single-stranded-DNA-specific exonuclease RecJ n=... 246 2e-63 UniRef50_Q8DJI0 Tll1243 protein n=1 Tax=Thermosynechococcus elon... 246 2e-63 UniRef50_A3UCE8 Single-stranded-DNA-specific exonuclease RecJ n=... 246 2e-63 UniRef50_A8UBS7 Single-stranded-DNA-specific exonuclease RecJ n=... 246 2e-63 UniRef50_C1F3K9 Single-stranded-DNA-specific exonuclease RecJ n=... 245 3e-63 UniRef50_B5EMW0 Phosphoesterase RecJ domain protein n=2 Tax=Acid... 245 3e-63 UniRef50_UPI0001C31CC5 single-stranded-DNA-specific exonuclease ... 245 4e-63 UniRef50_A7ZG65 Single-stranded-DNA-specific exonuclease RecJ n=... 244 5e-63 UniRef50_A8F1S2 Single-stranded-DNA-specific exonuclease RecJ n=... 244 6e-63 UniRef50_C0XKS9 Exonuclease RecJ n=3 Tax=Lactobacillus RepID=C0X... 244 7e-63 UniRef50_Q30NS6 Exonuclease RecJ n=3 Tax=Epsilonproteobacteria R... 244 7e-63 UniRef50_A8SRX9 Putative uncharacterized protein n=2 Tax=Clostri... 244 8e-63 UniRef50_C0WCD6 Exonuclease recJ n=1 Tax=Acidaminococcus sp. D21... 243 1e-62 UniRef50_B0MLV1 Putative uncharacterized protein n=1 Tax=Eubacte... 243 2e-62 UniRef50_C6XG71 Single-stranded-DNA-specific exonuclease protein... 243 2e-62 UniRef50_A5FQT9 Single-stranded-DNA-specific exonuclease RecJ n=... 242 2e-62 UniRef50_Q6MKZ4 Single-strand DNA-specific exonuclease n=1 Tax=B... 242 3e-62 UniRef50_Q0API9 Single-stranded-DNA-specific exonuclease RecJ n=... 241 5e-62 UniRef50_B1ZV73 Single-stranded-DNA-specific exonuclease RecJ n=... 241 5e-62 UniRef50_C7MMI3 Single-stranded-DNA-specific exonuclease RecJ n=... 241 6e-62 UniRef50_Q6MEM6 Putative ssDNA-specific exonuclease n=2 Tax=Para... 240 1e-61 UniRef50_UPI00016B257B single-stranded-DNA-specific exonuclease ... 240 1e-61 UniRef50_Q2JN66 Single-stranded-DNA-specific exonuclease RecJ n=... 239 3e-61 UniRef50_C7HTZ0 Single-stranded-DNA-specific exonuclease RecJ n=... 238 4e-61 UniRef50_B5YIG7 Single-stranded-DNA-specific exonuclease RecJ n=... 238 5e-61 UniRef50_C9RIN9 Single-stranded-DNA-specific exonuclease RecJ n=... 238 5e-61 UniRef50_A6DSV4 Single-stranded-DNA-specific exonuclease RecJ n=... 237 1e-60 UniRef50_B2IMS8 Single-stranded-DNA-specific exonuclease RecJ n=... 237 1e-60 UniRef50_B0CAF5 Single-stranded-DNA-specific exonuclease RecJ n=... 236 1e-60 UniRef50_Q04F00 Single-stranded DNA-specific exonuclease n=1 Tax... 236 1e-60 UniRef50_B2ULA8 Single-stranded-DNA-specific exonuclease RecJ n=... 236 2e-60 UniRef50_C9RBA5 Single-stranded-DNA-specific exonuclease RecJ n=... 236 2e-60 UniRef50_A4E7W6 Putative uncharacterized protein n=1 Tax=Collins... 236 2e-60 UniRef50_D0EM60 Single-stranded-DNA-specific exonuclease n=3 Tax... 236 3e-60 UniRef50_A5FY25 Single-stranded-DNA-specific exonuclease RecJ n=... 234 5e-60 UniRef50_B0S1I9 Single-strand DNA-specific exonuclease n=3 Tax=C... 234 8e-60 UniRef50_C7H0U6 Single-stranded-DNA-specific exonuclease RecJ n=... 234 8e-60 UniRef50_D0LJ88 Single-stranded-DNA-specific exonuclease RecJ n=... 234 1e-59 UniRef50_UPI000197A786 single-stranded DNA-specific exonuclease ... 233 1e-59 UniRef50_A9BF16 Single-stranded-DNA-specific exonuclease RecJ n=... 233 2e-59 UniRef50_A9BAH9 Single-stranded DNA-specific exonuclease n=1 Tax... 233 2e-59 UniRef50_B2V9Q3 Single-stranded-DNA-specific exonuclease RecJ n=... 233 2e-59 UniRef50_C3WKI0 Single-stranded-DNA-specific exonuclease recJ n=... 232 3e-59 UniRef50_A8F454 Single-stranded-DNA-specific exonuclease RecJ n=... 231 4e-59 UniRef50_C0EBF3 Putative uncharacterized protein n=1 Tax=Clostri... 231 4e-59 UniRef50_A7KV88 SsDNA exonuclease n=1 Tax=Bacillus phage 0305phi... 231 5e-59 UniRef50_UPI00017452AB single-stranded-DNA-specific exonuclease ... 231 6e-59 UniRef50_Q3AK10 Single-stranded-DNA-specific exonuclease RecJ n=... 231 7e-59 UniRef50_UPI00016C4908 single-strand DNA-specific exonuclease n=... 229 2e-58 UniRef50_Q7NPL4 Single-strand-DNA-specific exonuclease n=1 Tax=G... 229 2e-58 UniRef50_Q2RHV6 Single-stranded-DNA-specific exonuclease RecJ n=... 229 2e-58 UniRef50_A5TTL1 Recombination protein J n=7 Tax=Fusobacterium Re... 229 2e-58 UniRef50_B1I335 Single-stranded-DNA-specific exonuclease RecJ n=... 229 3e-58 UniRef50_C4FWR9 Putative uncharacterized protein n=1 Tax=Catonel... 228 3e-58 UniRef50_B4UA60 Single-stranded-DNA-specific exonuclease RecJ n=... 228 4e-58 UniRef50_Q6ALW7 Related to single-strand DNA-specific exonucleas... 228 5e-58 UniRef50_C1XP89 Exonuclease RecJ n=1 Tax=Meiothermus silvanus DS... 228 7e-58 UniRef50_A4IZE2 Single-stranded-DNA-specific exonuclease RecJ n=... 226 2e-57 UniRef50_B2USH8 Single-stranded-DNA specific exonuclease n=20 Ta... 225 3e-57 UniRef50_C2YFF0 Single-stranded-DNA-specific exonuclease RecJ n=... 224 5e-57 UniRef50_D1AL25 Single-stranded-DNA-specific exonuclease RecJ n=... 224 1e-56 UniRef50_Q1IXZ0 Single-stranded-DNA-specific exonuclease RecJ n=... 223 2e-56 UniRef50_Q7VGH0 Single-stranded DNA-specific exonuclease n=1 Tax... 223 2e-56 UniRef50_Q31G80 Exonuclease RecJ n=1 Tax=Thiomicrospira crunogen... 223 2e-56 UniRef50_A6G9W0 Single-stranded-DNA-specific exonuclease RecJ n=... 221 4e-56 UniRef50_Q7VBV8 Single-stranded DNA-specific exonuclease n=1 Tax... 221 7e-56 UniRef50_A8UQI8 Single-strand-DNA-specific exonuclease RecJ n=2 ... 221 8e-56 UniRef50_A2C286 DHH family:DHHA1 domain:Single-stranded-DNA-spec... 217 8e-55 UniRef50_P73518 Single-strand-DNA-specific exonuclease; RecJ n=1... 217 9e-55 UniRef50_A3VNM8 Single-stranded-DNA-specific exonuclease RecJ n=... 216 1e-54 UniRef50_Q0F3M9 Single-stranded-DNA-specific exonuclease RecJ n=... 216 2e-54 UniRef50_C3WCG5 Single-stranded-DNA-specific exonuclease recJ n=... 214 5e-54 UniRef50_C3XJZ6 Single-stranded-DNA-specific exonuclease RecJ n=... 213 1e-53 UniRef50_C2KX60 Single-stranded-DNA-specific exonuclease RecJ n=... 213 1e-53 UniRef50_D0GIS6 Single-stranded-DNA-specific exonuclease RecJ n=... 212 3e-53 UniRef50_C5ZWW3 RecJ exonuclease n=2 Tax=Helicobacter RepID=C5ZW... 211 6e-53 UniRef50_B5YFK1 Single-stranded-DNA-specific exonuclease RecJ n=... 210 1e-52 UniRef50_Q2JMF8 Single-stranded-DNA-specific exonuclease RecJ n=... 209 2e-52 >UniRef50_P28355 Single-stranded-DNA-specific exonuclease recJ n=222 Tax=cellular organisms RepID=RECJ_SALTY Length = 577 Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/577 (91%), Positives = 555/577 (96%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA 60 MKQQ QLRRRE DETA+LPA+LPPLLRRLYASRGVRSA+ELERSVKGMLPWQQLSG++ A Sbjct: 1 MKQQRQLRRREADETAELPADLPPLLRRLYASRGVRSARELERSVKGMLPWQQLSGIDNA 60 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 VEILYNAFREGTRIIVVGDFDADGATSTALSVL MR+LGC NI YLVPNRFEDGYGLSPE Sbjct: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPE 120 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 VVDQA ARGAQLIVTVDNGISSHAGV HA++LGIPVIVTDHHLPGDTLP AEAIINPNLR Sbjct: 121 VVDQAKARGAQLIVTVDNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLR 180 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 DC FPSKSLAGVGVAFYLMLALRTFLRD+GWFDERNIA PNLAELLDLVALGTVADVVPL Sbjct: 181 DCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPL 240 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 DANNRILTWQG+SRIRAGKCRPGIKALLE++NRD Q+LAASDLGFALGPRLNAAGRLDDM Sbjct: 241 DANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDM 300 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 SVGVALLLCDN+GEARVLA+ELDALNQTRKEIEQGMQ EAL LCEKLERS +TLPGGLAM Sbjct: 301 SVGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAM 360 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP Sbjct: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 +M+KFGGHAMAAGLSLEE KF+ FQQRFGELVTEWLDP+LLQGEV+SDGPLS AEM+ME Sbjct: 421 DLMIKFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSME 480 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA 540 VAQLLRDAGPWGQMFPEPLFDG FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN+DT Sbjct: 481 VAQLLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTT 540 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 WPDNGVREV+LAYKLDINEFRGNRSLQIIID+IWP+ Sbjct: 541 CWPDNGVREVELAYKLDINEFRGNRSLQIIIDDIWPL 577 >UniRef50_P39693 Single-stranded-DNA-specific exonuclease recJ n=116 Tax=Gammaproteobacteria RepID=RECJ_DICD3 Length = 575 Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/577 (74%), Positives = 497/577 (86%), Gaps = 2/577 (0%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA 60 M QLRRR ET +LP LP LLRRLYA RGVR QELERS++G+L ++ L G+ +A Sbjct: 1 MNVVTQLRRRPTAET-ELPDSLPALLRRLYAQRGVRQMQELERSLRGLLDYRLLGGITQA 59 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 VE+L A + RI++VGDFDAD ATSTAL+VLA+RS+ + YLVPNRFEDGYGLSPE Sbjct: 60 VEVLRQALADNRRIVIVGDFDADRATSTALTVLALRSMAAREVQYLVPNRFEDGYGLSPE 119 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 VV QA A+GA+LIVTVDNGISSHAGV+ A GI V+VTDHHLPG+TLPAAEA+INPNL Sbjct: 120 VVAQAPAKGAELIVTVDNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLS 179 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 DC FPSK+LAGVGVAFYLM+ALR LR+ GWF ER +A PNLAELLDLVALGTVADVVPL Sbjct: 180 DCAFPSKALAGVGVAFYLMMALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPL 239 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 DANNRIL QG+SRIRAGKCRPGI+ALLEV+NRDA +L ASDLGFALGPRLNAAGRLDDM Sbjct: 240 DANNRILISQGLSRIRAGKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDM 299 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 SVGV LLLC +I +AR+LA++LDALNQ+R+EIE GMQ+EAL LCE+LER+RDTLP GLAM Sbjct: 300 SVGVELLLCKHIVQARMLASDLDALNQSRREIEAGMQVEALHLCEQLERTRDTLPLGLAM 359 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 YHP+WHQGVVGILASRIKERFHRPVIAFAPAGDG LKGSGRSI GLH+ ALERLDT +P Sbjct: 360 YHPQWHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSIAGLHLH-ALERLDTCHP 418 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 G+MLKFGGHAMAAGLSL ED+F F+QRF +LV EWLD S L+G V SDG L+ ++T+ Sbjct: 419 GLMLKFGGHAMAAGLSLVEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELASPDVTLG 478 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA 540 A++LR+AGPWGQ FPEP FDG FRLLQQRLVGERHLKVMVEP+GGGPLLDGIAFNVDT Sbjct: 479 TAEMLREAGPWGQAFPEPTFDGRFRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTL 538 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 LWPD+ VREV+LAYKLD+NEFRG RS+Q++I+++WP+ Sbjct: 539 LWPDSSVREVELAYKLDVNEFRGKRSVQLLIEHLWPL 575 >UniRef50_Q2NRF9 Single-stranded-DNA-specific exonuclease n=4 Tax=Gammaproteobacteria RepID=Q2NRF9_SODGM Length = 578 Score = 853 bits (2203), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/578 (71%), Positives = 489/578 (84%), Gaps = 1/578 (0%) Query: 1 MKQQIQLRRREVDETADLP-AELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEK 59 M +LRRR + ++A L A++PPLL+RLY RGV + ELER V+G+L + L+G+E+ Sbjct: 1 MNMTTELRRRPLSDSAVLAEADIPPLLKRLYVQRGVCAVGELERGVRGLLAYHTLTGIEQ 60 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 AV++L A + RI+VVGDFDADGATSTAL+VLA+R +G ID+LVPNRFEDGYGLSP Sbjct: 61 AVDLLIRALADQRRIMVVGDFDADGATSTALTVLALRQMGAQTIDFLVPNRFEDGYGLSP 120 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 EVV+QA ARGAQLI+TVDNGISSHAGV A GIPV++TDHHLPGDTLPAAEAI+NPNL Sbjct: 121 EVVEQAAARGAQLILTVDNGISSHAGVTLAHEKGIPVLITDHHLPGDTLPAAEAIVNPNL 180 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 RDC F SKSLAGVGVAFYLMLALR L D GWF +R IA P LAELLDLVALGTVADVVP Sbjct: 181 RDCTFASKSLAGVGVAFYLMLALRARLNDSGWFTQRGIAAPKLAELLDLVALGTVADVVP 240 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 LDANNRIL QG+SRIRAG+CRPGI+AL EVANRD +L ASDLGFALGPRLNAAGRLDD Sbjct: 241 LDANNRILVHQGLSRIRAGRCRPGIRALAEVANRDITRLCASDLGFALGPRLNAAGRLDD 300 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 MSVGVALLL +++ +AR+LA ELDALNQTR+EIE GM+ EAL LC+ + R +P GLA Sbjct: 301 MSVGVALLLSEDLPQARMLAAELDALNQTRREIEHGMEAEALALCQSMARDEQAMPFGLA 360 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 +YH +WHQGVVGILASRIKERFHRPVIAFAPAG+G LKGSGRS+ GLHMRD LERLDTL+ Sbjct: 361 IYHEQWHQGVVGILASRIKERFHRPVIAFAPAGEGVLKGSGRSVAGLHMRDLLERLDTLH 420 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 PGM+LKFGGHAMAAGL+LE +F+ F+QRF ELV EWLDP++L+G + SDG L+ E+++ Sbjct: 421 PGMILKFGGHAMAAGLTLEHAQFERFRQRFAELVDEWLDPAMLEGVIWSDGELAGQELSL 480 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT 539 A+LLRD GPWGQ FP+PLFDG FR+L QRLVGE+HLK+++EPV GGP+LDGIAFN+D+ Sbjct: 481 TTAELLRDGGPWGQGFPDPLFDGRFRVLNQRLVGEKHLKLLLEPVAGGPMLDGIAFNIDS 540 Query: 540 ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 LWPDN V V+LAY+L++NEFRGNRSLQ++I +IWP+ Sbjct: 541 RLWPDNSVHTVELAYRLEVNEFRGNRSLQLLIQHIWPL 578 >UniRef50_B4RXN3 Single-stranded-DNA-specific exonuclease RecJ n=12 Tax=Gammaproteobacteria RepID=B4RXN3_ALTMD Length = 573 Score = 617 bits (1591), Expect = e-175, Method: Compositional matrix adjust. Identities = 309/566 (54%), Positives = 412/566 (72%), Gaps = 2/566 (0%) Query: 9 RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAF 68 RRE+ A L ++L P++ R+Y R + + +LE ++G+ + L G+ +A +IL A Sbjct: 7 RREI-SGASLSSDLHPVIDRIYRGRNIANIDDLENGLRGLTHFNALKGMPEAAQILATAI 65 Query: 69 REGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR 128 + RII+VGDFDADGATST++ +LA+R++G N+D+LVPNRF+ GYGLS +VD+A + Sbjct: 66 EQNKRIIIVGDFDADGATSTSVCILALRAMGFDNVDFLVPNRFDFGYGLSVPIVDEAAKQ 125 Query: 129 GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKS 188 GA +IVTVDNGIS GV HA+ LGI V+VTDHHLPGD LP A+AI+NPN C FPSK+ Sbjct: 126 GADIIVTVDNGISCIDGVTHAKGLGIQVVVTDHHLPGDVLPPADAIVNPNQPGCEFPSKN 185 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 LAGVGVAFY+MLAL+ L+ QG+F++ IA PNLA LLD+VA+GTVADVV LD NNRIL Sbjct: 186 LAGVGVAFYIMLALKAKLQQQGYFEKAGIAPPNLASLLDIVAVGTVADVVVLDKNNRILV 245 Query: 249 WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 308 QG+ RIRAG+CRPGIKAL+EVANRD L ++DLGF +GPRLNAAGRLDDMS G+A LL Sbjct: 246 HQGLQRIRAGQCRPGIKALVEVANRDCAHLTSTDLGFVVGPRLNAAGRLDDMSQGIACLL 305 Query: 309 CDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQG 368 D+ +AR++A ELDALN+ R+EIE GM+ +A E++ +P L +Y ++HQG Sbjct: 306 EDDTIQARMIAAELDALNKERREIETGMKAQAEMALEQMVLDEGDMPSALVVYREDFHQG 365 Query: 369 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGG 428 V+GI+A R+KE++ +PVIAFA D +KGS RSI G+H+RD L+ ++T YPG++ KFGG Sbjct: 366 VIGIVAGRLKEKYLKPVIAFAHQDDLIIKGSARSIPGVHIRDVLDEVNTRYPGVIEKFGG 425 Query: 429 HAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 HAMAAGLSL K + F++ F ++ + L ++SDG LS +E+ + A LLR A Sbjct: 426 HAMAAGLSLPVAKLRDFERAFIDIAGKHLAKLDGNHALLSDGDLSASELCLPFAHLLRQA 485 Query: 489 GPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVR 548 GP+GQ F PLFDG F LL QRLVG++HLK MV G +D IAFNVD WP+ V+ Sbjct: 486 GPFGQGFESPLFDGEFSLLDQRLVGQKHLK-MVLKGDGANEVDAIAFNVDLKAWPNAMVK 544 Query: 549 EVQLAYKLDINEFRGNRSLQIIIDNI 574 V +AY+LDIN FRG ++Q+I++ I Sbjct: 545 RVHVAYRLDINVFRGQETVQLIVEQI 570 >UniRef50_Q1LTU5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LTU5_BAUCH Length = 575 Score = 616 bits (1589), Expect = e-175, Method: Compositional matrix adjust. Identities = 292/573 (50%), Positives = 408/573 (71%), Gaps = 4/573 (0%) Query: 5 IQLRRREVDETADL-PAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEI 63 +QLRRR + + + L +P LL+R+Y RG+++ +ELE + Q +G+++A + Sbjct: 3 VQLRRRAIGDISILDEINIPILLKRIYIQRGIKNPRELELKTCYLFTNAQFNGIQQAAIL 62 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 L A R+ I+VVGDFD DGATSTAL +LA++ +G I++L+ NRF+D YGL+ VV+ Sbjct: 63 LTKALRDKLSIMVVGDFDVDGATSTALVILALKQMGVEKINFLILNRFKDSYGLNTRVVE 122 Query: 124 QAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 + + GAQ+I+TVDNG+SSH + A + GIPV+V DHHLPG TLP A +I+NPNL++CN Sbjct: 123 KVASSGAQIILTVDNGVSSHTAINLAVAKGIPVLVIDHHLPGQTLPNAVSIVNPNLKNCN 182 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 F SK+LA VGVAFYLMLALR L GWFD+ IA+P LA+L DLVALGTVAD+VPLD N Sbjct: 183 FQSKNLASVGVAFYLMLALRMELCKSGWFDKNKIAVPKLAKLFDLVALGTVADMVPLDMN 242 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NRIL QG++ IR G CRPGI+AL+E++N + K+ ASDLGF + PRLNAAGRL DMS+ Sbjct: 243 NRILVHQGINLIRTGCCRPGIRALVEISNINLTKICASDLGFYISPRLNAAGRLQDMSLS 302 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 V LLL DN+ AR++A +LD LN+ R+ IEQ M I+AL LC+++E +++ +P GL +YH Sbjct: 303 VELLLADNLSTARIIAAKLDRLNKERRLIEQKMFIQALNLCKQIENTKNGIPSGLLLYHQ 362 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMM 423 WHQGV+GI+AS+IKE F+RPVI APA + LKGS RS+ +H+ + L+ LD LYP MM Sbjct: 363 NWHQGVIGIIASQIKEFFYRPVIILAPADNFLLKGSCRSVPSVHIYNLLQILDQLYPNMM 422 Query: 424 LKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483 L FGGHAMAAGL++E+ K LF+ F L + + PS+L + SDG L E+++ A+ Sbjct: 423 LNFGGHAMAAGLTIEQSKLSLFRDSFYSLANQLIKPSMLNKIIWSDGELVGKEISISTAK 482 Query: 484 LLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWP 543 +LR+ GPWG F +PLFDG F +L + L+ + HLK+ ++ + G ++DGI FN++ + Sbjct: 483 ILREGGPWGVEFTDPLFDGIFCILNKMLIKKVHLKIKLQDISNGLIIDGIIFNINKIILL 542 Query: 544 DNGVREV-QLAYKLDINEFRGNRSLQIIIDNIW 575 + + ++AYKL+IN N LQ++I IW Sbjct: 543 SIKTKTLYRIAYKLNIN--YSNHQLQLLIQYIW 573 >UniRef50_Q5QYV7 Single-stranded DNA-specific exonuclease n=1 Tax=Idiomarina loihiensis RepID=Q5QYV7_IDILO Length = 570 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 302/574 (52%), Positives = 395/574 (68%), Gaps = 11/574 (1%) Query: 6 QLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILY 65 ++RR ++ + LP ++PPLLR++YA RGVR A EL G+L + L + KAVE+L Sbjct: 5 EIRRYQLVDDDFLPQQMPPLLRQIYARRGVRRADELSLKASGLLHFSSLRDIGKAVELLQ 64 Query: 66 NAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA 125 NA + ++ + GDFDADGATS+AL V A+++ G + Y VPNR DGYGLS +V+Q Sbjct: 65 NALKNQAKVCICGDFDADGATSSALMVSALQAFGLQQVGYRVPNRMTDGYGLSVAMVEQL 124 Query: 126 HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFP 185 QLIVTVDNGI++H + AR GI V+VTDHHLP + LP A AI+NPN C F Sbjct: 125 AVENVQLIVTVDNGIAAHDAIVLAREKGIQVLVTDHHLPPEELPPANAIVNPNQHGCEFS 184 Query: 186 SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNR 245 SK+LAGVGVAFY++LALR+ LR+QG +PNLA+ LDLVALGTVADVVPLD NNR Sbjct: 185 SKNLAGVGVAFYVLLALRSALREQGVE-----PLPNLADWLDLVALGTVADVVPLDYNNR 239 Query: 246 ILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVA 305 +L QG++RIR G RPGIKALLEVANRDA +LAASDLGFALGPR+NAAGRLDD+ +G+ Sbjct: 240 VLVQQGIARIRKGMSRPGIKALLEVANRDASQLAASDLGFALGPRINAAGRLDDIGLGIE 299 Query: 306 LLLCDNIGEARV--LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 LL GE R LA +L+ LNQ RK IE M+ A + KL + +P + +Y P Sbjct: 300 CLLA---GETRAQQLAQQLNDLNQQRKSIETEMREHAESAVAKLCFDQGQVPDLVTLYQP 356 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMM 423 +WH GV+GI+A R+KE+ +RPVIA A D LKGS RS+ GLHMRD LER+ +L PG+M Sbjct: 357 DWHAGVIGIVAGRVKEQVNRPVIALANDDDEFLKGSARSVSGLHMRDLLERVHSLQPGIM 416 Query: 424 LKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483 +FGGHAMAAGL+++++ F + ++ +EWL Q SDG L+ +++++ Sbjct: 417 ERFGGHAMAAGLTMKKENLTRFSELAEQVASEWLSEEQKQRVFWSDGELTTTQLSLDSVN 476 Query: 484 LLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWP 543 L+ AGPWGQ FPEP+FDG F L+ QR+VGERHLK++V G LLD IAFNVDT WP Sbjct: 477 TLQSAGPWGQQFPEPMFDGQFELVDQRIVGERHLKLVVRH-PQGELLDAIAFNVDTQQWP 535 Query: 544 DNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 V+L YK +N FRG ++Q++++ I I Sbjct: 536 ARQASVVELLYKPQLNHFRGRTNVQLLVEQIRAI 569 >UniRef50_UPI0000E0E6D4 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E6D4 Length = 593 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 280/553 (50%), Positives = 388/553 (70%), Gaps = 4/553 (0%) Query: 25 LLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADG 84 +L ++ RG+ S EL K +L + QL+G++ AVE+L+ + +I+++GDFDADG Sbjct: 41 ILSAIFLHRGIESLDELATGAKDLLHFNQLNGIQAAVELLFTGLQSQQKIVIIGDFDADG 100 Query: 85 ATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGA-QLIVTVDNGISSH 143 ATSTAL +LA+R LG ++ YLVPNRF+ GYGLSPE+VD A + A +++TVDNGI+ H Sbjct: 101 ATSTALCMLALRDLGFHSVQYLVPNRFDFGYGLSPEIVDVAIEQYAPDILLTVDNGIACH 160 Query: 144 AGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALR 203 AGV HA++ G+ VI+TDHHLPG++LP A+AI+NPN C F SK LAGVGVAFY++ A + Sbjct: 161 AGVAHAKAHGLKVIITDHHLPGESLPNADAIVNPNQHYCEFGSKHLAGVGVAFYVLSAFK 220 Query: 204 TFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPG 263 T L GWF + A PNLA+ LD+VALGTVADVV LD NNRI +QG+ RIRAG+CRPG Sbjct: 221 THLLSVGWFPDPARA-PNLAQYLDIVALGTVADVVKLDKNNRIFVYQGVQRIRAGRCRPG 279 Query: 264 IKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELD 323 I+ALL+VA++ K+ A+DLGF LGPRLNAAGRL+DM+ G+ LL D+ AR +A+ LD Sbjct: 280 IRALLDVASKAPDKVTATDLGFILGPRLNAAGRLEDMAQGIECLLADDYDTARGMAHTLD 339 Query: 324 ALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHR 383 +LN+ R+EIE M+ +A ++ TLP GL +Y ++HQGV+GILA RIKE+ +R Sbjct: 340 SLNRQRREIEGQMREQAEAALASIQLDDATLPDGLVLYDADFHQGVIGILAGRIKEQHYR 399 Query: 384 PVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFK 443 P + FA D LKGS RSI G+H+RD + ++T +P ++ KFGGHAMAAGLS+ Sbjct: 400 PTVVFAQQDDHELKGSARSIPGVHIRDVFDEINTRHPHIIKKFGGHAMAAGLSINVQYID 459 Query: 444 LFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH 503 F F ++ +++ + +++SDG LS MT++ A L AGPWGQ F EP+FD Sbjct: 460 EFTTAFHSVLAKYMAQVPNEAQILSDGQLSSRNMTLDFAHTLVQAGPWGQGFEEPIFDNI 519 Query: 504 FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRG 563 F L+ QR+VG++HLK++++ +D IAFN+D WPD V+ V +AYKL+INEFRG Sbjct: 520 FELVSQRVVGQKHLKMVLKL--DQVTVDAIAFNIDVNTWPDLNVKRVHVAYKLNINEFRG 577 Query: 564 NRSLQIIIDNIWP 576 +S+Q ++ P Sbjct: 578 QQSVQCMVVKFGP 590 >UniRef50_Q8D2B5 RecJ protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D2B5_WIGBR Length = 580 Score = 560 bits (1442), Expect = e-158, Method: Compositional matrix adjust. Identities = 250/566 (44%), Positives = 387/566 (68%), Gaps = 3/566 (0%) Query: 1 MKQQIQLRRREVDETADLP-AELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEK 59 M I++ R ++ ++ + +P +L+++Y++RG++ +E++ K ++ ++ L G++K Sbjct: 1 MNYDIKIHRISKIKSPEIENSNIPIILKKIYSNRGIKQLKEIDLKTKNLISYKNLLGIKK 60 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 A ++L A + +I++VGDFD DGA+ TAL+ L + LG +++++PNRF++GYGL+ Sbjct: 61 ATDVLKIALIKRKKIVIVGDFDVDGASGTALAFLILMKLGAKKVEFIIPNRFKNGYGLTK 120 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 E+V+ + ++IVTVDNGISSH GV AR G+ +I++DHH+P LP A AIINPNL Sbjct: 121 EIVEFIEKKEGEVIVTVDNGISSHEGVNLARKKGMKIIISDHHIPDKILPKAHAIINPNL 180 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 ++C F SKSL+GVGV FYLM++LR+ L+ WF + I IPNLAE LDLVALGT++D+ P Sbjct: 181 KNCKFKSKSLSGVGVIFYLMISLRSELKKNSWFKDNKIIIPNLAEFLDLVALGTISDLSP 240 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 LD NNRIL QGM+RIR G CR GIKAL+E++N D L+ +D+ + L P++N AGRL D Sbjct: 241 LDLNNRILVHQGMNRIRNGNCRAGIKALIEISNLDISFLSTNDISYILSPKINVAGRLKD 300 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 M +GV LLL ++I +AR+LA EL+ LN+ R+ I + M+ +A +C K+++ +T P G Sbjct: 301 MRIGVKLLLTNDIKKARLLAKELNFLNKKRQIIGKKMEKQAFFICTKIQKKTNTTPSGFV 360 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 +YH +WH+G++GI+ASRIKERF PVI FA + + LKGS RSI+G+++R L+ L+ +Y Sbjct: 361 LYHQDWHEGILGIIASRIKERFQVPVIIFAKSKNNLLKGSIRSIEGINIRLILKELNNMY 420 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 P +++ FGGH++AA L +E K F++ F + + + SDG L ++++ Sbjct: 421 PDLIISFGGHSVAAALVIESSKLIYFKKIFLNFIENKKINVSSKRIISSDGELFYDDISI 480 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT 539 + A LL + PWG F P+FDG FR+ Q L+ + HLK+ ++ + GG +LDGI FNVD Sbjct: 481 KTATLLLYSSPWGNKFNYPIFDGKFRIFDQLLINKIHLKIKIQHILGGNILDGICFNVDL 540 Query: 540 ALWPDNGVREVQLAYKLDINEFRGNR 565 WP+ + V+LAY L + ++ N+ Sbjct: 541 KSWPNKKINFVKLAYTLRV--YKKNK 564 >UniRef50_B6SE72 RecJ n=2 Tax=Kingella RepID=B6SE72_9NEIS Length = 570 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 274/555 (49%), Positives = 380/555 (68%), Gaps = 15/555 (2%) Query: 20 AELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGD 79 A PPLL +LYA+R V+SA EL S+ ++P+ QL E A + L A + +I+++ D Sbjct: 23 AGTPPLLAQLYAARHVQSADELGDSLSQLIPYTQLKNCEAAAQRLATAIEQRQKILIIAD 82 Query: 80 FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139 +DADGAT+ ++ + +R++G + +D+ VPNRFE GYGL+PE+ D A GAQLI+TVDNG Sbjct: 83 YDADGATACSVGIKGLRNMG-AVVDFFVPNRFEHGYGLTPELADIAAQMGAQLILTVDNG 141 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199 ISS GV A++LGI +VTDHH G ++P I+NPN R C+FPSKSLAGVGV FY++ Sbjct: 142 ISSQEGVARAKALGIDTVVTDHHTAGSSIPDC-IIVNPNQRGCDFPSKSLAGVGVIFYVL 200 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 +ALR LR +G+F + + PNL LLDLVALGTVADVVPLD NNRIL QG+ RIRAGK Sbjct: 201 MALRAQLRSRGYFQQAGLPEPNLGNLLDLVALGTVADVVPLDHNNRILVSQGLKRIRAGK 260 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 GI+AL E+A RD +K D+GFALGPR+NAAGRLDDMS+G++ LL DN+ A+ +A Sbjct: 261 MSHGIRALFEIARRDTRKAQPFDMGFALGPRINAAGRLDDMSIGISCLLSDNLPYAQQIA 320 Query: 320 NELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKE 379 +EL+ LNQTR+EIEQGM E L LC + S T L++YH ++HQGVVGI+ASR+K+ Sbjct: 321 SELNQLNQTRQEIEQGMLQEVLALCPNVLPSSQTT---LSVYHEQFHQGVVGIVASRLKD 377 Query: 380 RFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEE 439 RF+RPV FAP+ DG L+GSGRSI GLH+RDAL+ + P M++KFGGHAMAAGL+L + Sbjct: 378 RFYRPVFVFAPSDDGELRGSGRSIAGLHLRDALDMVAKRCPDMIVKFGGHAMAAGLTLRK 437 Query: 440 DKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPL 499 +F F Q F ++V ++ +L ++DG L +++T+E A L+ WGQ FP P Sbjct: 438 HRFDEFCQVFEDVVQGLVNEDILSQTYLTDGSLHGSDITLEQADLISRQ-VWGQNFPPPS 496 Query: 500 FDGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLD 557 F F +++Q+ +G ++H K ++ DG F D ++++ Y+ Sbjct: 497 FSDEFDVVRQQFMGKEQKHKKAWLQK-------DGYEFEAMFWRCEDELPNKIRIVYRPT 549 Query: 558 INEFRGNRSLQIIID 572 +NE+ GN+ LQ+ +D Sbjct: 550 VNEWNGNQELQLYVD 564 >UniRef50_C0N9A7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9A7_9GAMM Length = 585 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 264/577 (45%), Positives = 393/577 (68%), Gaps = 6/577 (1%) Query: 4 QIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEI 63 Q+++++R+ DLP P +RR+ A+RG++ A++L + + QQ+ G+++AV I Sbjct: 3 QVEIKQRDSSGWQDLPDAWPDCIRRIMAARGIKQAEQLFFELANLPRPQQMLGMDQAVAI 62 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 + A ++ ++ VV DFD+DGATS AL++ +R++G +I+++VPNRF GYGL+PE++D Sbjct: 63 MVEALQKQWKVTVVADFDSDGATSCALAIRGLRAMGLQHINFIVPNRFIHGYGLTPELLD 122 Query: 124 QAHARGAQ--LIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 Q L++TVDNGI++ AGVE A+ GI V+VTDHHL G+ LP A+AI+NPN Sbjct: 123 DIPNTTEQPDLLLTVDNGIAAVAGVEAAQQRGIKVLVTDHHLAGEVLPTADAIVNPNQAG 182 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 FPSK+LAGVGV FYL+L LR LR+Q WF ++N+ P L++ LD+VALGTVADVVPLD Sbjct: 183 DAFPSKNLAGVGVCFYLLLGLRQALREQDWFMQQNLDEPKLSDWLDIVALGTVADVVPLD 242 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NR L G+ RIR+G+ GI+AL ++A R+ KL + DL F++ PRLNAAGR++DM Sbjct: 243 KLNRTLVDIGLKRIRSGRACAGIRALSQIAGRETDKLVSPDLAFSIAPRLNAAGRMEDMG 302 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 +G+ LLL D +A +A +LD +N R+ +EQ MQ +ALT+ +KL T+ G +Y Sbjct: 303 LGINLLLTDEWQDALSIAAQLDQINLERRGVEQQMQQDALTMLDKLSLETATVAPGYCLY 362 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 PEWHQGV+G+LASRIKE+ HRPVIAFAP +G +KGS RSI G+H+RD L R+ P Sbjct: 363 DPEWHQGVIGLLASRIKEKMHRPVIAFAPGNEGEIKGSARSIAGIHIRDVLARIAAQNPT 422 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 M+ +FGGHAMAAGL+L+ + F+ F ++T+ +D ++ Q ++ +DG LS E+T+++ Sbjct: 423 MLQRFGGHAMAAGLTLKLNDLDNFRVAFEAVLTDSVDAAVYQQQLATDGELSHHEITLQL 482 Query: 482 AQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGER--HLKVMVEPVGGGPLLDGIAFNVDT 539 A+ L A PWGQ F EP F G F + RLVG+ HL++ ++ +G + +AF Sbjct: 483 AEQLPQAAPWGQGFEEPRFHGLFDVKSWRLVGQEADHLRLSLQ-LGDSREITAMAFRQQK 541 Query: 540 ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 W + G + + + Y+L +NEFR +++Q +ID++ P Sbjct: 542 PEWLERGSK-ILIRYRLAVNEFRATKTIQFLIDDLLP 577 >UniRef50_A4BBM4 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Reinekea blandensis MED297 RepID=A4BBM4_9GAMM Length = 573 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 275/551 (49%), Positives = 370/551 (67%), Gaps = 11/551 (1%) Query: 24 PLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDAD 83 PL+ RLY +R V QELE S++ ++ ++ L G+ +AV +L A E R++VVGD+D D Sbjct: 31 PLVDRLYRARQVTDPQELEPSLRHLVDYRLLKGLTEAVSLLNRARSERWRVLVVGDYDTD 90 Query: 84 GATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSH 143 GATSTAL+VL ++S G ++DYL+PNRFE GYGLS E+VD A R LIVTVDNGI+S Sbjct: 91 GATSTALAVLGLQSFGL-DVDYLLPNRFEYGYGLSAEIVDLALTRQPDLIVTVDNGIASI 149 Query: 144 AGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALR 203 GVE A + G+ V+VTDHHL G LP A AI+NPN DC FPSK+ G V +Y+++ALR Sbjct: 150 EGVERANAAGVKVLVTDHHLAGAELPQAAAIVNPNQPDCAFPSKAACGCTVLYYVLIALR 209 Query: 204 TFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPG 263 LR QG D +PNL + LDLVAL TVADVVPLD NNR L G++R+RAG+CRPG Sbjct: 210 AELRAQGQPD-----LPNLGQWLDLVALATVADVVPLDENNRRLVTHGLNRVRAGQCRPG 264 Query: 264 IKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELD 323 I+AL EVA R Q+ ASD GF +GPRLNAAGRLDDM++GV LLL ++ EAR LA+EL Sbjct: 265 IRALFEVAGRQWQEAKASDFGFVIGPRLNAAGRLDDMTIGVQLLLAESDDEARSLASELH 324 Query: 324 ALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHR 383 ALN R++IEQ M + L R+ G+ + +WH+GV+GI+ASR+K+R H+ Sbjct: 325 ALNTERRQIEQSMVADVSKSLPDLSRTDKRC--GIVVTGNDWHEGVIGIVASRVKDRIHK 382 Query: 384 PVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFK 443 PV+AFA +G KGS RS+ G+HMRDAL+ + G++LKFGGHAMAAGL++ D+ Sbjct: 383 PVVAFAAGDNGQWKGSARSVPGVHMRDALDWVAKKSEGVVLKFGGHAMAAGLTIAADRSD 442 Query: 444 LFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH 503 F F + V + L + DG LS +E+T++ A L AGPWGQ FPEPLF G Sbjct: 443 EFADLFDQAVQALAESEALTPHLWCDGALSDSELTLDNALALEQAGPWGQAFPEPLFYGE 502 Query: 504 FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRG 563 F++ +R++ +RHLK+ ++ G IAFNV+ ++ + R V Y+L +N FRG Sbjct: 503 FQISDRRVLADRHLKMTLQQ--GAGEWPAIAFNVEPSILNASATR-VHGLYQLSVNRFRG 559 Query: 564 NRSLQIIIDNI 574 S+Q+I + + Sbjct: 560 QVSVQLIFNKL 570 >UniRef50_Q1N0E3 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Gammaproteobacteria RepID=Q1N0E3_9GAMM Length = 581 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 269/571 (47%), Positives = 369/571 (64%), Gaps = 21/571 (3%) Query: 24 PLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDAD 83 P++ R+ SRG+++ +L S+ + +Q L G+++AV +L A R RI+++GDFDAD Sbjct: 15 PIIERVLDSRGLKTG-DLSFSLNQLAGYQALKGIDQAVAMLEFAIRSQQRIVIIGDFDAD 73 Query: 84 GATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR-GAQLIVTVDNGISS 142 GATSTAL+V A++ LG + YLVPNRFE GYGLS + A+ + L+VTVDNGISS Sbjct: 74 GATSTALAVDALQQLGAHWVHYLVPNRFEFGYGLSSAIAQLAYEQYQPDLLVTVDNGISS 133 Query: 143 HAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLAL 202 GVE A LG+ V+VTDHHL D+LP A+AI+NPN DC FPSK+ G V FY+M AL Sbjct: 134 FEGVETAHELGMKVLVTDHHLAADSLPNADAIVNPNQPDCLFPSKAACGCAVVFYVMCAL 193 Query: 203 RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRP 262 R + G +N+ N+A+ LDLVAL TVADVVPLD NN+IL QG+ RIRAG+ RP Sbjct: 194 RAHRMNLGDETAKNL---NMAQYLDLVALATVADVVPLDRNNQILVEQGLRRIRAGQARP 250 Query: 263 GIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 322 G++ALL+VA R A L + D GFALGPRLNAAGR+DDMS+G+ LL A +A L Sbjct: 251 GVQALLQVAKRQAPLLTSKDFGFALGPRLNAAGRMDDMSIGIECLLSKEFTRAVHIAETL 310 Query: 323 DALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFH 382 D LNQ RK +E MQ EAL + E S + +YHP+WHQGVVG+LASRIKE+ Sbjct: 311 DELNQDRKSVEGQMQKEALKILETTSLSNEQEQATYCLYHPQWHQGVVGLLASRIKEKLF 370 Query: 383 RPVIAFAPAGDGT-----------LKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 RPVIAFAPA D +KGSGRSI G HMRDAL+ + P ++ KFGGHAM Sbjct: 371 RPVIAFAPASDDVTNEALASGEFEIKGSGRSIPGFHMRDALDLVAKRLPHVLQKFGGHAM 430 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 AAGLS+++ K F+ F ++ + + +L E+++DG + + + +A+ L+ PW Sbjct: 431 AAGLSIQQKHLKEFETCFEQVARDIMTADMLVNEIITDGEPNYEDYNVHIARQLKFVAPW 490 Query: 492 GQMFPEPLFDGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDT---ALWPDNG 546 GQ FPEP+FDG F ++ RL+G + HLK+ + LD I F+++ + + Sbjct: 491 GQNFPEPIFDGEFDVINYRLIGSEKNHLKLTLASKNHHRYLDAILFSIERHGLSAQDVSN 550 Query: 547 VREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 + V + + LD+NEFRG ++Q++I ++ I Sbjct: 551 LSRVHIVFDLDVNEFRGQENVQLMIRHLRSI 581 >UniRef50_C6RPU9 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Acinetobacter RepID=C6RPU9_ACIRA Length = 570 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 262/571 (45%), Positives = 374/571 (65%), Gaps = 16/571 (2%) Query: 5 IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEIL 64 IQ+++R + + + P L + A RGV S QELE +K +L L G+E+AVEI+ Sbjct: 4 IQVKQRPLLTRVESFQHVSPFLAHILARRGVASEQELELRLKYLLS-PCLKGLEQAVEII 62 Query: 65 YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124 A + +I++VGD+DADGATSTAL +LA+R +G +++ YLVP+RF+ GYGL+P + D Sbjct: 63 NQAIDQQKKIVIVGDYDADGATSTALMILALRDMG-ADVAYLVPDRFKYGYGLTPAIADL 121 Query: 125 AHARGA-QLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 A R L++TVDNGISSH GV+ A+ G+ VI+TDHHL PAAEA++NPN CN Sbjct: 122 AFTRFTPDLLITVDNGISSHEGVKQAQDHGMQVIITDHHLTTKETPAAEAVVNPNQLGCN 181 Query: 184 FPSKSLAGVGVAFYLMLALRTFLR--DQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 FPSK+LAGVGVAFY++ L +F + DQ ++ N+ + LDLVALGT ADV LD Sbjct: 182 FPSKALAGVGVAFYVLANLCSFRKRADQ--------SVSNITQYLDLVALGTYADVASLD 233 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NNRIL G+ RI+ +CRPGI ALL++A R+ L A DLGF LGPR+NAAGR++ M Sbjct: 234 YNNRILVDAGLKRIQQQQCRPGILALLDIAGREPAALKAQDLGFVLGPRINAAGRMETME 293 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 +G+ LL ++ A LA +L+ LN R++IE M+ EAL E+L+ S++ +P L M+ Sbjct: 294 IGIECLLAPDLENAYPLARQLNQLNIERRQIEAQMKQEALRYLEQLQLSKENIPPALIMF 353 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALERLDTLYP 420 WHQGV+GI+A R+KE+FHRP I FA DG +KGS RS++G+H+RD +E++ YP Sbjct: 354 EEHWHQGVIGIVAGRLKEQFHRPSIVFAADEDGIHIKGSARSVEGIHIRDCIEQIAEQYP 413 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 ++ FGGHA AAGL++ ++ F F+Q F +L+ +D +LL + +DG L + ++ Sbjct: 414 HLVRYFGGHAAAAGLTIRKEHFLEFKQVFIQLIA-GMDETLLSATLWTDGELPVEALVLD 472 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA 540 L+ GPWGQ FP P+F+G F+++ R + E HLK+ + + G ++D IAFN Sbjct: 473 TVDLIEKLGPWGQKFPSPVFEGIFKVVDFRWLKETHLKLRL-ALNNGQVVDAIAFNAKDR 531 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIII 571 D +V L Y+L+ NEF GN LQ+ I Sbjct: 532 FEYDPENDQVDLVYELERNEFNGNTGLQLRI 562 >UniRef50_A1AWT7 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Bacteria RepID=A1AWT7_RUTMC Length = 573 Score = 486 bits (1251), Expect = e-136, Method: Compositional matrix adjust. Identities = 258/560 (46%), Positives = 372/560 (66%), Gaps = 14/560 (2%) Query: 21 ELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 ++P L+++YA+RG+ + + + P ++ A+ +L A RI++VGDF Sbjct: 17 DIPTFLKKIYAARGINESHLSLNLIHLLKP--NFLQLDVALVLLEQALLNQKRILIVGDF 74 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA-HARGAQLIVTVDNG 139 D DGAT++ ++V ++R +G +D+LVPNRFE GYGLS E+V A + LI+TVDNG Sbjct: 75 DCDGATASVVAVKSLRMMGAKFVDFLVPNRFEHGYGLSEEIVKLAIQEKQPDLIITVDNG 134 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199 ISS GV+ A+S I VI+TDHHLP TLP A+ IINPNL+ C F SK+LAGVGV FYL Sbjct: 135 ISSFDGVKLAKSSNIQVIITDHHLPSKTLPQADIIINPNLKGCEFLSKNLAGVGVCFYLF 194 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 A +T L +F I P+L +LDLVALGTVADVV LD NNRIL QG+ RI+ K Sbjct: 195 SAFKTHLIKCNYFTNYKITPPDLRNMLDLVALGTVADVVKLDQNNRILVNQGVKRIQQKK 254 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 C PGI ALLE++NR + L ASDLGF++ PRLNAAGRL+D+S G+ LL ++I +AR A Sbjct: 255 CAPGILALLEISNRPSATLRASDLGFSVAPRLNAAGRLNDISRGIKCLLTEDINDARRYA 314 Query: 320 NELDALNQTRKEIEQGM--QIEALTLCEKLERSRDTLPG---GLAMYHPEWHQGVVGILA 374 EL+A NQ RK+ + M Q +A+ ++L +++ + ++++ P WH+G++GI+A Sbjct: 315 QELEAFNQQRKQEQARMQDQAQAIVDAQELSITQENMSSDRFAISLFDPSWHEGIIGIVA 374 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 ++KE +H PV FA + D LKGS RSI +H++D L+ LD P ++LKFGGHAMAAG Sbjct: 375 GKLKEDYHCPVAIFAQS-DSDLKGSIRSIPSVHIKDLLDLLDRQNPDLILKFGGHAMAAG 433 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 LS++ + F F+Q F ++ LD + + E+++DG L +++++ AQLL DAGPWGQ Sbjct: 434 LSIKPENFTDFKQAFENVIQTHLDNRMPKVELLTDGELEAFDLSLDNAQLLVDAGPWGQG 493 Query: 495 FPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAY 554 F EP+F G F +++Q++VGE+HLK +++ G + D IAF P + +AY Sbjct: 494 FDEPIFYGEFEIIEQKIVGEKHLKFLLKLKGNTQVFDAIAF-----FQPPLLSMQALVAY 548 Query: 555 KLDINEFRGNRSLQIIIDNI 574 KL IN +RG+ SLQ++I+ I Sbjct: 549 KLSINSWRGSISLQLMIEQI 568 >UniRef50_Q87EB5 Single-stranded DNA exonuclease n=23 Tax=Bacteria RepID=Q87EB5_XYLFT Length = 613 Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust. Identities = 261/570 (45%), Positives = 371/570 (65%), Gaps = 21/570 (3%) Query: 19 PAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVG 78 P +PPLLRR+Y +RG + + +L LS ++ A +L + RI+VVG Sbjct: 27 PDNVPPLLRRVYTARGCADPVTAQPCLAQLLSPAMLSNMQAATVLLTEVIKANGRILVVG 86 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 DFD DGAT+ A++V +R LG N+ + VPNR GYGLS +V++ L+VTVD+ Sbjct: 87 DFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEELAPLQPALLVTVDH 146 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 GI+ HAG+ A++ G V+VTDHHLPG+TLPAA+ I+NPNL FPSK+LAGVGV FY+ Sbjct: 147 GIACHAGIAAAKARGWKVLVTDHHLPGETLPAADVIVNPNLPGDLFPSKTLAGVGVIFYV 206 Query: 199 MLALRTFL-------------RDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNR 245 +LALR L R ++N P+L LLDLVA+GTVAD+VPLD NNR Sbjct: 207 LLALRARLYPAARAECEGQETRIHSSISQKN--RPDLTSLLDLVAVGTVADLVPLDTNNR 264 Query: 246 ILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVA 305 L G+ R+R G+ G++AL+EV+ RD +L A+D+GFAL PRLNAAGRL+DM++G+ Sbjct: 265 ALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAAGRLEDMALGIE 324 Query: 306 LLLCDNIGEARVLANELDALNQTRKEIEQGMQIEA-LTLCEKLERSRDTLPGGLAMYHPE 364 LLL ++ AR +A L+ +N R+ ++QGM +A + + + +S LP + ++ P+ Sbjct: 325 LLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAEQAVAQAMAQSGGVLPMAVCLFDPD 384 Query: 365 WHQGVVGILASRIKERFHRPVIAFAPA--GDGTLKGSGRSIQGLHMRDALERLDTLYPGM 422 WH GV+G++AS++K++ HRPV+A APA G L+GS RSI GLH+RD L LD+ YPGM Sbjct: 385 WHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDVLVALDSGYPGM 444 Query: 423 MLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVA 482 + KFGGHAMAAGL+L+ + +F++ F V +D ++LQ E+ SDG L+ E+ A Sbjct: 445 IQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGELAADELDALHA 504 Query: 483 QLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALW 542 + LR GPWGQ FPEPLFDG F +LQ R++ ERHLK+ V G L+ I FN Sbjct: 505 RALRLGGPWGQGFPEPLFDGEFEVLQWRVLKERHLKMEVRYSGRHDALNAIYFN---GWQ 561 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIID 572 D R ++LAY+L +++RG ++Q+I++ Sbjct: 562 GDPPARRLRLAYRLVCDDYRGGDAIQLIVE 591 >UniRef50_Q2YBC4 Exonuclease RecJ n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2YBC4_NITMU Length = 613 Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust. Identities = 268/592 (45%), Positives = 364/592 (61%), Gaps = 51/592 (8%) Query: 24 PLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDAD 83 P+L R+Y++RG+ +LE ++P+ +L + L A R+++V D+D+D Sbjct: 24 PVLARVYSARGIEEPGQLEIDWSRLIPFARLKNATAMAQFLATAIALRKRLLIVADYDSD 83 Query: 84 GATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHA--RGAQLIVTVDNGIS 141 GAT+ A+ + A+R G + +DYLVPNRFE GYGL+PE+V A A +++TVDNGI+ Sbjct: 84 GATACAVGIRALRKFG-AQVDYLVPNRFEYGYGLTPEIVRVAAAGVHRPDILITVDNGIA 142 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLA 201 S GV A LG+ V+VTDHHLPGDTLP A I+NPN C+FPSK L+GVGV FY+MLA Sbjct: 143 SVEGVAEANRLGMQVLVTDHHLPGDTLPEAAVIVNPNQPGCDFPSKHLSGVGVMFYVMLA 202 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 261 LR LR +G F PNL LLDLVALGTVADVV LD NNR+L QG+ RIR G Sbjct: 203 LRAELRAKGMFASPQQE-PNLGSLLDLVALGTVADVVKLDDNNRLLVQQGLKRIRKGSGC 261 Query: 262 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 321 GI AL+ +A R+ + + +LGF +GPRLNAAGRLDDMS+G+ L+ D+ A LA + Sbjct: 262 AGINALINIACRNFSQTSTYELGFMIGPRLNAAGRLDDMSLGIECLITDDPPRAAQLALQ 321 Query: 322 LDALNQTRKEIEQGMQIEALTLCEKLE------------------------RSRDTLPGG 357 LD N+ R+EIE M+ AL + E + RS D+ G Sbjct: 322 LDTFNRKRQEIESHMRDSALNMLENIFSGSSGLQDSPTLRPSDMPQRSGVFRSHDSPQEG 381 Query: 358 -----LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 L ++ P WHQGV+GILASRIK++FHRPVI FAP G LKGSGRSI G H+RDAL Sbjct: 382 TSAYALTLFDPGWHQGVIGILASRIKDKFHRPVITFAPGGQDELKGSGRSIPGFHLRDAL 441 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 + + YPG++LKFGGH+ AAGL++ F+ F+ F + E L P+ L+ + +DG L Sbjct: 442 DLVSKRYPGLLLKFGGHSAAAGLTIRTCDFEKFRAAFEQTARELLGPADLKRVIETDGDL 501 Query: 473 SPAEMTMEVA-QLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEP----VGGG 527 +E+T+E+A QL+R WGQ FP+P F F + QR+VG++HLK+ + G Sbjct: 502 DESEITLELAEQLVRQV--WGQGFPQPAFRSRFHVEDQRVVGQKHLKLKLRKARPAAGNN 559 Query: 528 P------LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 P L D I F D P GV + Y+L +N+F+ + SLQ I+++ Sbjct: 560 PPEKPVLLYDAILFLQD---GPLPGV--IDAVYRLQVNDFKSDVSLQFILEH 606 >UniRef50_A9IQX3 Single-stranded-DNA-specific exonuclease n=163 Tax=cellular organisms RepID=A9IQX3_BORPD Length = 695 Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust. Identities = 266/557 (47%), Positives = 357/557 (64%), Gaps = 17/557 (3%) Query: 20 AELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGD 79 A + PLL RL+A+RGV + + +LP L+ V+ A IL +A +G R+++V D Sbjct: 151 AGIHPLLARLWAARGVTHPDQTRLAWPALLPPAGLTHVDHAARILADAIAQGKRLLIVAD 210 Query: 80 FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA---HARGAQLIVTV 136 +D DGAT+ A+ + A+R+ G +N+D+LVPNRFE GYGLSP VVD A HA LI+TV Sbjct: 211 YDCDGATACAVGLRALRAFG-ANVDFLVPNRFETGYGLSPAVVDLACAHHAGKPDLIITV 269 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 DNGI+S GV A + GI V+VTDHHLPGDTLP A AI+NPN C FPSK+LAGVGV F Sbjct: 270 DNGIASVDGVAAANAAGIGVVVTDHHLPGDTLPDALAIVNPNQPGCGFPSKNLAGVGVIF 329 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 YLMLALR LR +G + P L L DLVALGTVADVV LDANNR+L QG+ R+R Sbjct: 330 YLMLALRAELRRRGVYPPDGG--PRLDALSDLVALGTVADVVKLDANNRLLVTQGLQRMR 387 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 AG+ +PG++AL VA R+ + DLGFALGPR+NAAGRL DMS+G+A L D+ +A Sbjct: 388 AGRMQPGLRALFAVAAREPRSACGFDLGFALGPRINAAGRLADMSLGIACLTTDDEAQAL 447 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 +A +LD +N+ R+ IE M+ +A+ + + + ++ P WHQGVVG++ASR Sbjct: 448 DMARQLDQINRERRGIEAEMREQAMAAMDAAGSANGAT---VCVFDPSWHQGVVGLVASR 504 Query: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 +KE++ RP +AFAPAGD L+GSGRSI +H+RD L+ + +PG++ KFGGHAMAAGL+ Sbjct: 505 LKEKYWRPTLAFAPAGDDELRGSGRSIPDVHLRDVLDLVSKRHPGLIRKFGGHAMAAGLT 564 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 L D F +F F V E + + +DG L +VA LL+ WG F Sbjct: 565 LGRDDFSVFGPAFDAAVRELTGRDRFEPLLETDGSLESGYANADVATLLQQQ-VWGAGFA 623 Query: 497 EPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKL 556 PLF F + QRLVGE+HLK+ +E G D I F D +L +Q AY+L Sbjct: 624 PPLFLDEFTVRNQRLVGEKHLKLSLE--RGHQRFDAIWFGHDQSL-----PERIQAAYRL 676 Query: 557 DINEFRGNRSLQIIIDN 573 + N + G S Q++I++ Sbjct: 677 EPNVWNGMVSAQLVIEH 693 >UniRef50_Q2SXD4 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Burkholderia thailandensis RepID=Q2SXD4_BURTA Length = 564 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 267/555 (48%), Positives = 360/555 (64%), Gaps = 17/555 (3%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 L P+L RLYA+RG+ S ++E ++ ++P QL G A +L +A G +++VV D+D Sbjct: 22 LHPVLARLYAARGIASPADVETALSRLVPPAQLKGCADAAALLADALEAGRKMLVVADYD 81 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 DGAT+ A++V +R G + IDYLVPNRFE GYGL+PE+V+ A AR L++TVDNGI+ Sbjct: 82 CDGATACAVAVRGLRMFG-AKIDYLVPNRFEYGYGLTPEIVELAAARKPDLLITVDNGIA 140 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLA 201 S GV A + GI V+VTDHHLPGDTLPAA AI+NPN C FPSK +AGVGV FY++LA Sbjct: 141 SVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFPSKHIAGVGVMFYVLLA 200 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 261 LR LR +G F + P L LLDLVALGTVADVV LD NNR+L QG+ RIR G+ + Sbjct: 201 LRAELRARGAFGDARPE-PRLDGLLDLVALGTVADVVRLDGNNRVLVAQGLQRIRNGRMQ 259 Query: 262 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 321 PG+ AL A RDA+ + DLGF LGPRLNAAGRL DMS+G+ L D++G A LA + Sbjct: 260 PGVAALFRAAARDARSASGFDLGFGLGPRLNAAGRLSDMSLGIECLTTDDVGRAWELAQQ 319 Query: 322 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 381 LDA+N+ R+EIE GMQ +AL ++ + + +++PEWHQGV+GI+A R+KERF Sbjct: 320 LDAMNRERREIEAGMQQQALADLASVDPAEAAT---ITLFNPEWHQGVIGIVAGRLKERF 376 Query: 382 HRPVIAFAPAGDGT---LKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLE 438 HRP FA A DG+ +KGSGRSI G H+RDA++ + P +++ FGGHAMAAG++L+ Sbjct: 377 HRPAFTFAHA-DGSGARVKGSGRSIPGFHLRDAIDLISKREPDLIVTFGGHAMAAGVTLD 435 Query: 439 EDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEP 498 F F + EWL L + +DG L A T +V +LL DA WGQ FP P Sbjct: 436 TGNVPRFAAAFEAVAREWLSDDALARVIETDGDLEDAYFTPQVVELL-DAAVWGQGFPAP 494 Query: 499 LFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDI 558 LF G F + Q LV ++HLK+ + + G + I FN L LA++L Sbjct: 495 LFSGEFDVASQALVKDKHLKLQL--MRGRQRFNAIWFNHAEPL-----PARATLAFRLAS 547 Query: 559 NEFRGNRSLQIIIDN 573 + + G +Q+I+++ Sbjct: 548 DTWNGTTRVQLIVEH 562 >UniRef50_Q12ES6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Polaromonas sp. JS666 RepID=Q12ES6_POLSJ Length = 600 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 262/584 (44%), Positives = 361/584 (61%), Gaps = 45/584 (7%) Query: 24 PLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDAD 83 PLL +LYA+RGVRS EL+ + +LP L G +A +L +A G +I VV D+D D Sbjct: 23 PLLAQLYAARGVRSMDELDDGLGKLLPPASLRGTREAARLLADAMAAGQKICVVADYDCD 82 Query: 84 GATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSH 143 GAT+ A+++ +R LG N+ YLVP+R DGYGL+P + ++ A GA ++VTVDNGI+S Sbjct: 83 GATACAVALRGLRLLGAQNVGYLVPDRVIDGYGLTPPIAERVKATGADVLVTVDNGIASL 142 Query: 144 AGVEHARSLGIPVIVTDHHLPG-----DTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 GV A++LG+ V+VTDHHLP LPAA+ I+NPN DC+F SKS+AGVGV FY+ Sbjct: 143 EGVARAKALGMQVLVTDHHLPALKDGQVVLPAADVIVNPNHPDCSFESKSMAGVGVMFYV 202 Query: 199 MLALRTFLRDQGWFDER------------------------NIAIPNLAELLDLVALGTV 234 +LALR LR++G F I P L LL LVALGTV Sbjct: 203 LLALRAELRERGVFGRPAAGPPPGGTAPSGGSTAHEVASVGAIPQPKLDTLLPLVALGTV 262 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 ADVV LDANNR L QG+ RIRAG G+ L A R A D GFALGPR+NAA Sbjct: 263 ADVVKLDANNRRLVAQGLKRIRAGALPAGLAGLFTAAGRHAALATTFDFGFALGPRINAA 322 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRL DM++G+ LL D+ A LA LD +N+ R++IE GM+ +A + + + Sbjct: 323 GRLSDMTLGIECLLTDDAARADELARMLDGINRERRDIEAGMREQAQLAADAMIDEDEEP 382 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAF----APAGDGTLKGSGRSIQGLHMRD 410 P +A++ PE+H+GVVGI+ASRIK++ HRP F AP + LKGSGRSI G H+RD Sbjct: 383 PPAIAIFDPEFHEGVVGIVASRIKDKLHRPTFVFAASQAPGKEHELKGSGRSIAGFHLRD 442 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 AL+ + +PG++L+FGGHAMAAG ++ E++F+ F+Q ++ EWLD + L + +DG Sbjct: 443 ALDLVAKRHPGVLLRFGGHAMAAGCTIAEERFEQFEQALQQVAHEWLDAATLTRRLDTDG 502 Query: 471 PLSPAEM--TMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGP 528 PL PAE T V L R+ WGQ F P F ++ QRLVGE+HL + ++ G Sbjct: 503 PL-PAEYRRTDVVDTLHREV--WGQGFAAPTFSEEVEVVSQRLVGEKHLALKLK--HQGQ 557 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIID 572 +DGI F TAL V+LA++LD +E++G + ++ +++ Sbjct: 558 PVDGIWFGHTTAL-----PARVKLAFRLDADEWQGVKRVRFLVE 596 >UniRef50_B0VNC7 SsDNA exonuclease, 5'--> 3' specific , Mg dependent n=13 Tax=Moraxellaceae RepID=B0VNC7_ACIBS Length = 566 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 251/570 (44%), Positives = 364/570 (63%), Gaps = 13/570 (2%) Query: 4 QIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEI 63 +IQ+++R + + +PP + + A RGV+S QELE +K +L +L G++ AV + Sbjct: 3 KIQIKQRPLLTRPEQFQGVPPFIAEILARRGVQSEQELELKLKNLLA-PELKGLDAAVAL 61 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 + A E +I++VGD+DADGATSTAL +L +R +G + +DYLVP+RF+ GYGL+P + + Sbjct: 62 MDQAIDEQKKIVIVGDYDADGATSTALMMLVLRDMG-AQVDYLVPDRFKYGYGLTPAIAE 120 Query: 124 QAH-ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDC 182 AH L++TVDNGISSHAGV+ A +LG+ VI+TDHHL P AEA++NPN C Sbjct: 121 LAHHTYQPDLLITVDNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGC 180 Query: 183 NFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA 242 FPSK+LAGVGVAFY++ L + QG + + + LDLVALGT ADV LD Sbjct: 181 EFPSKALAGVGVAFYVLANLASLRNRQGK------STSKVTQYLDLVALGTYADVAVLDY 234 Query: 243 NNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSV 302 NNRIL G+ RI+ +CR GI ALL++A R+A + A DLGF LGPR+NAAGR++ M + Sbjct: 235 NNRILVDAGVKRIQQHQCRVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRI 294 Query: 303 GVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYH 362 G+ LL D + A +A +L+ LN R++IE M+ +AL+ + L+ S+ +P L ++ Sbjct: 295 GIECLLADTMETAYPIAQQLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFE 354 Query: 363 PEWHQGVVGILASRIKERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALERLDTLYPG 421 WHQGV+GI+A R+KE+FHRP I FAP DG +KGS RSI G+H+RD +E++ +P Sbjct: 355 ENWHQGVIGIVAGRLKEQFHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPE 414 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 ++ FGGHA AAGL++ ++ F+ F+ F + V +D S+ Q + +DG L + + ++ Sbjct: 415 LVSHFGGHAAAAGLTIRKENFEAFKTVFNDCVAA-MDESIFQATLWTDGELPVSALQLDT 473 Query: 482 AQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL 541 + GPWGQ FP P F+G+F+++ R + E HLK+ + D IAFN Sbjct: 474 LNWIEQLGPWGQKFPLPQFEGYFKVIDFRWLKETHLKLRLAIDQYS--FDAIAFNAAGRF 531 Query: 542 WPDNGVREVQLAYKLDINEFRGNRSLQIII 571 D V L Y++D N F GN SLQ+ I Sbjct: 532 EFDPMRDHVHLVYEIDRNVFNGNVSLQLRI 561 >UniRef50_Q6F719 SsDNA exonuclease, 5'--> 3' specific , Mg dependent n=2 Tax=Acinetobacter RepID=Q6F719_ACIAD Length = 568 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 251/569 (44%), Positives = 366/569 (64%), Gaps = 12/569 (2%) Query: 5 IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEIL 64 IQ+++R + D ++P + + A RGV S Q+L+ +K +L L G++ A+ ++ Sbjct: 4 IQIKQRPLLTHPDQFQDVPEFIAHILARRGVDSIQQLDLKLKYLLK-PTLKGLDTAIALI 62 Query: 65 YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124 A + +II+VGD+DADGATSTAL LA++ +G + +DY+VP+RF+ GYGL+P + D Sbjct: 63 DQAIDQQQQIIIVGDYDADGATSTALMCLALKEMG-ARVDYIVPDRFKYGYGLTPAIADL 121 Query: 125 AHARGA-QLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 AH + +L++TVDNGISSHAGVE A+ LG+ VI+TDHHL + P AEA++NPN +C Sbjct: 122 AHQQCQPELLITVDNGISSHAGVEQAQQLGMKVIITDHHLTTKSAPDAEAVVNPNQLNCP 181 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 FPSK+LAGVGVAFYL+ L + + + + + LDLVALGT ADV LD N Sbjct: 182 FPSKALAGVGVAFYLLAHLSSLRQ------AHHKPSCKITQYLDLVALGTYADVASLDYN 235 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NRIL G+ RI+ +CR GI ALL++A RD L A DLGF LGPR+NAAGR+D M++G Sbjct: 236 NRILVDAGLKRIQQQQCRAGILALLDIAKRDPSTLKAQDLGFVLGPRINAAGRMDSMNIG 295 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 + LL ++ A +A +L+ LN R+++E M+ +AL E ++ + +P L M+ Sbjct: 296 IECLLASDLETAYPIAEQLNRLNLERRQVETEMKQQALGYLEDIQLQHENIPPALVMFAE 355 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALERLDTLYPGM 422 WHQGV+GI+A R+KE+FHRP I FAP DG +KGS RSI+G+H+RD +E++ +P + Sbjct: 356 NWHQGVIGIVAGRLKEQFHRPSIVFAPDTDGEHIKGSARSIEGIHIRDTIEQVAEQHPHL 415 Query: 423 MLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVA 482 + FGGHA AAGL+L++ F+ F+ F + + +D +LLQ + +DG L + +E Sbjct: 416 VSHFGGHAAAAGLTLKKSHFEEFKNVFTACIAQ-MDETLLQAVLWTDGSLPAQAIDLETV 474 Query: 483 QLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALW 542 + GPWGQ FP P F+G F +L R + + HLK+ + +G +D IAFN Sbjct: 475 DWIERLGPWGQKFPLPQFEGRFEVLDYRWLKDIHLKLKL-GLGEYGSVDAIAFNAAQKFD 533 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIII 571 D + V L Y+LD NEF G+ +LQ+ I Sbjct: 534 FDPMKKHVNLVYELDRNEFNGSVNLQLRI 562 >UniRef50_A5WDK1 Exonuclease RecJ n=3 Tax=Psychrobacter RepID=A5WDK1_PSYWF Length = 611 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 250/605 (41%), Positives = 370/605 (61%), Gaps = 54/605 (8%) Query: 15 TADLPAELP----------PLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEIL 64 T LP +LP P L RL+ +RG++S Q+L+ + +LP Q LS V++AV ++ Sbjct: 9 TGTLPDDLPACFTQMYQQAPTLTRLFLARGIQSDQDLDYGLSALLPAQGLSDVDEAVTLM 68 Query: 65 YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124 A RI++VGDFD DGATSTAL + + +G +D++VP+RF+ GYGL+PE+V Sbjct: 69 DEAIEAQRRILIVGDFDCDGATSTALMMRILSQMGAV-VDFVVPDRFKYGYGLTPEIVQL 127 Query: 125 A-HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 +I+TVDNGISSH GV+ A + GI VI+TDHHL + P A A++NPN C+ Sbjct: 128 GIEQYQPDMIITVDNGISSHEGVDKAIANGIKVIITDHHLTTKSKPNAHAVVNPNQLGCS 187 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 F SK+L GVGVAFYL+ L + R+ G R+ A ++ LDLVALGT+ADV LD N Sbjct: 188 FESKALVGVGVAFYLLGRLAKYRREAG----RSTA--QVSRYLDLVALGTIADVGVLDHN 241 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NRIL G++ IRAG+C GI ALLE+A RD QK++ D GF +GPR+NAAGR+D+M +G Sbjct: 242 NRILVNHGLAAIRAGRCSLGILALLELAGRDYQKMSVQDFGFVIGPRINAAGRMDNMRIG 301 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD----------- 352 + L+ D++ +A+ LA ELD LN+ R+ +E M+ +A + +L+ + D Sbjct: 302 IECLMADDMSDAKRLAFELDKLNKERRYVEGEMREQADEILRQLQPNSDRSQAQTTDEQS 361 Query: 353 -----------------TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT 395 P L +Y WHQGV+GI+A R+KE +RP I FAPA D Sbjct: 362 DDSDDSLKQQAESFTDKAQPRSLILYQDNWHQGVIGIVAGRLKESHYRPAIVFAPADDTQ 421 Query: 396 L------KGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRF 449 L KGS RSI G+H+RDA+ER+ +P ++ FGGHAMAAGL+L+ FK F + F Sbjct: 422 LDGQDAIKGSARSIPGIHIRDAIERIAESHPELITHFGGHAMAAGLTLKRKDFKAFAEAF 481 Query: 450 GELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ 509 EL + ++ S+ + + +DG L + +++ + L WG F P FDG F ++Q Sbjct: 482 -ELQMQSVEASVFEEQQFTDGQLLAEDFSLQFVEALTQNHIWGHGFVPPQFDGVFDVVQA 540 Query: 510 RLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQI 569 R++ ++HLK+ ++ G +D I FN D W D ++V + ++L INE++GN+++Q+ Sbjct: 541 RILKDKHLKLSLKYPGVMYPIDAIWFNYDPKKW-DYRAQQVHVLFELSINEWQGNQNIQL 599 Query: 570 IIDNI 574 ++ ++ Sbjct: 600 MVKDV 604 >UniRef50_B6BWW7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=beta proteobacterium KB13 RepID=B6BWW7_9PROT Length = 563 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 227/577 (39%), Positives = 349/577 (60%), Gaps = 24/577 (4%) Query: 5 IQLRRREVDETAD---LPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAV 61 ++L +++DE+ + P++ ++ A+R + S+++++ ++ +L +L ++A Sbjct: 1 MKLINKKIDESIKQKLINTGRHPIVSQILAARNISSSKDVDYPIEQLLSPNKLLNCDEAA 60 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 + L +A ++ +I +VGD+DADGA+ +++++L R LG +D+L+P+RF++GYGLS E+ Sbjct: 61 DFLSDAIQKQKKITIVGDYDADGASGSSVAILGFRLLGIE-VDFLIPSRFKNGYGLSSEI 119 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 VD A+ + +I+TVDNGI+S G+ HA LGI VIVTDHHL + LP A+ IINPN + Sbjct: 120 VDMANTKETDIIITVDNGIASFEGISHANDLGIDVIVTDHHLQAENLPDAKFIINPNQKK 179 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 C+FPSK+L G GV FYL++A+R LRDQ +FD N+ PNL ++LDLVAL T+AD+V +D Sbjct: 180 CSFPSKNLCGAGVVFYLLIAIRKKLRDQNYFDNLNVDEPNLLQILDLVALATIADMVKMD 239 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NNR+L G+ IR+ +C G+K L + N+ SDL F + P++NAAGR+DDMS Sbjct: 240 FNNRLLVHHGLRVIRSQQCNLGLKKLFMLTNKSHLTALTSDLSFVIAPKINAAGRMDDMS 299 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 +GVA L N EA A +L N RK+ E MQ EA + + T + ++ Sbjct: 300 LGVACLTATNENEAHEYARQLIEFNFQRKKTETDMQEEAQAIMRGFNNNNKT----ICLF 355 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 + +WHQGV+GILASR+KE F+RPVI FA G LKGS RSI+G H+RDA++ + P Sbjct: 356 NDKWHQGVIGILASRLKENFYRPVIIFAQDESGYLKGSARSIEGFHVRDAIDLVAKKNPE 415 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM-- 479 +++ FGGHAMAAGL++++D+F F Q F E+ L P L + D + + + Sbjct: 416 VIVTFGGHAMAAGLTIKKDRFDSFVQSFEEVAESILKPEDLSEIIEVDDSILQDNINVHI 475 Query: 480 --EVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 E+ QL WG F PLF F + Q+++ H K+ + + I FN Sbjct: 476 IDEINQL-----EWGNGFQRPLFTDTFDCVDQKVIKGLHTKLNL--TKHNQTFESIFFNY 528 Query: 538 DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 ++ PD V+ Y L+ N+F + + I I Sbjct: 529 QESI-PD----RVKCLYTLETNKFNNTNKVTLNIKKI 560 >UniRef50_D0KXT7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXT7_HALNC Length = 597 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 258/589 (43%), Positives = 366/589 (62%), Gaps = 22/589 (3%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAV 61 +Q ++RR+ + + + + L + +RG+ +++ ++ +LP + G++ A Sbjct: 6 NEQRLIQRRQQPQIPEAMSSIDSRLAAILVNRGIVHPRQINPDLEFLLPPADMPGIDVAA 65 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 +IL +A RE RI+++GDFDADGAT+TAL V A+R++G ++Y +P+R GYGLSP + Sbjct: 66 DILADAVRENARILIIGDFDADGATATALCVRALRAMGAKQVEYTLPDRQRHGYGLSPAL 125 Query: 122 VDQAHARG---AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 + A +I+TVDNGI++ AGV A +L VI+TDHHLPGDTLP A AI+NPN Sbjct: 126 LKDWIAEADAPPDIILTVDNGIAAFAGVAAALTLNATVIITDHHLPGDTLPPAHAIVNPN 185 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 L +F SK++AGVGVAFY+M ALR L Q WF IA PNLA LDLVA+GTVADVV Sbjct: 186 LNGSDFASKAIAGVGVAFYVMAALRERLSAQDWF-AGGIARPNLARWLDLVAVGTVADVV 244 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 LD NNR L QG++RI+A +C PGI AL VA +D + +++DLGF +GPRLNAAGRL+ Sbjct: 245 SLDDNNRRLVAQGLARIQAQQCVPGISALFAVAGKDPRYASSTDLGFVVGPRLNAAGRLE 304 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGM------QIEALTLCEKLERSRD 352 DM +GV LL D+ AR A L+ +N R+ +EQ M Q ++ L E L+ R Sbjct: 305 DMRIGVDCLLADDPISARQYAMTLNEINHERRALEQEMLFSLKKQGKSSGLNE-LDLDRP 363 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD----GTLKGSGRSIQGLHM 408 P ++ +HQGV+GI+A R+KER+ RPV FAP + LK SGRSI G+H+ Sbjct: 364 IDPADWVIFDDSFHQGVIGIVAGRLKERWQRPVFVFAPENNDAPRAKLKASGRSIPGVHL 423 Query: 409 RDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS 468 RD L + T P +M FGGHAMAAGLSL D+ F++ F + + Q V + Sbjct: 424 RDVLVSMATTAPDLMHAFGGHAMAAGLSLSFDQLDTFRRLFAREMAKHRLHFPDQAIVHT 483 Query: 469 DGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGE-RHLKVMVEPVGGG 527 DGPLS E+T++ AQ L+ PWG PEP+FD F +L++ + E RH ++ + + Sbjct: 484 DGPLSANELTLDFAQQLQTCTPWGTDCPEPIFDNRFEVLERTPLKEGRHWRLRLRLLKTE 543 Query: 528 PLLDGIAFNVDTALWPDNGV-----REVQLAYKLDINEFRGNRSLQIII 571 P I ++ TA+W G + LAY++DIN FRG ++LQ++I Sbjct: 544 PATPTIGADL-TAVWFGIGDHIPAGKYWHLAYRIDINRFRGQQTLQLMI 591 >UniRef50_UPI0000E87D07 exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87D07 Length = 559 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 234/547 (42%), Positives = 337/547 (61%), Gaps = 17/547 (3%) Query: 26 LRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGA 85 L + A+R + S E+ +K ++P +L +E L+ ++ +I+++GD+DADGA Sbjct: 25 LASILAARNIGSIAEIHYDLKNLIPPNRLYSLEATAVFLHQCIKKQKKILIIGDYDADGA 84 Query: 86 TSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAG 145 T+TA++VL +R +N+D+LVPNRFE GYGL+ +V +A + +I+TVDNGI+S G Sbjct: 85 TATAVAVLGLRKF-LANVDFLVPNRFEYGYGLTIGIVKEALKKTPDVIITVDNGIASIEG 143 Query: 146 VEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTF 205 V+ AR I VIVTDHHLP D +P A I+NPN ++C+F SKSL GVGV FYL++ALR Sbjct: 144 VQFARDNNIDVIVTDHHLPADQIPNANFIVNPNQKNCSFSSKSLCGVGVVFYLLMALRAV 203 Query: 206 LRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIK 265 R+ F E I PNL +L+DLV LGTVAD+VPLD NNRIL GM +I+ C GI+ Sbjct: 204 FREANEFIE--IQEPNLFDLIDLVCLGTVADLVPLDFNNRILVHHGMKKIKRNSCNFGIQ 261 Query: 266 ALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDAL 325 A+ +++N+ L SD+ F++ P+LNAAGRLDDMS+G+ LL ++ EA V A EL L Sbjct: 262 AIAKLSNKSLSHLKTSDISFSIAPKLNAAGRLDDMSIGIKCLLSQSLQEAEVFAIELIKL 321 Query: 326 NQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPV 385 N RKEIE M+ +AL E + + ++ WHQGV+GILASRIKE++ RP Sbjct: 322 NSQRKEIEVEMKEDALKHIIFDEEKNYS----ICLFDESWHQGVIGILASRIKEKYFRPT 377 Query: 386 IAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLF 445 I FA +G LKGSGRSI G H+RDAL+ + + +++ FGGHAMA+GL+++E F+LF Sbjct: 378 IIFAKDANGILKGSGRSIPGFHLRDALDFISKKHSDLIITFGGHAMASGLTIDEVNFELF 437 Query: 446 QQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLR-DAGPWGQMFPEPLFDGHF 504 + F + L +V D S M + + D WGQ F P F F Sbjct: 438 VKVFNAHCANVMSKDDLN--LVVDVDESILTMNATFDDIFKIDMSIWGQGFSPPSFTDEF 495 Query: 505 RLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGN 564 L+ Q+ + +H K + G + + I FN L PD +++ Y ++ NEFRG+ Sbjct: 496 TLVSQKTLMNKHTKCQLSL--NGKVYEAIFFNFSENL-PD----KIKAIYSIEANEFRGS 548 Query: 565 RSLQIII 571 + +Q+I+ Sbjct: 549 KKIQLIL 555 >UniRef50_C6NUA0 Single-stranded-DNA-specific exonuclease recJ n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUA0_9GAMM Length = 577 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 248/551 (45%), Positives = 339/551 (61%), Gaps = 14/551 (2%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLPW---QQLSGVEKAVEILYNAFREGTRIIVVG 78 L P+L RLYA+R VR ++L V+ + P Q L G+ A E+L +A R+ + +VG Sbjct: 23 LDPVLARLYAARAVRETRQLRLDVEQLSPGEGDQGLLGLGAAAELLADAVRQQRVVCIVG 82 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DGAT+TAL A+ G + Y+VP+RF GYGL+PE+V Q A +++VTVDN Sbjct: 83 DYDCDGATATALLHEALSLCGARALRYVVPDRFRWGYGLTPELVAQLPA-DTEIVVTVDN 141 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 GI+S GV A++ + VI+TDHHLPG LPAA+AI+NP C FP KS +GV VAFYL Sbjct: 142 GITSVDGVAAAKARNLQVIITDHHLPGAVLPAADAIVNPRQPGCPFPWKSSSGVAVAFYL 201 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 A+R L D+G+ P+ +L DLVALGTVADVV L+ NNRIL QG+ R+R+G Sbjct: 202 AAAVRRRLLDRGYL---GAGAPHFGQLWDLVALGTVADVVALEHNNRILVQQGLKRLRSG 258 Query: 259 KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVL 318 + RPG+ ALLE A + + A+ LGF L PR+NAAGRL+DM +G+ LLL + EA L Sbjct: 259 RARPGLAALLECAGVEPAAVTAATLGFTLAPRINAAGRLEDMGLGIRLLLSQDRAEAAEL 318 Query: 319 ANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIK 378 A LD LN+ R+ IE M A + + L L GL ++ PEWH GV+GI+A R++ Sbjct: 319 ARTLDELNRQRRAIETQMSEAAQQIVDDLPDCGHNL--GLCVFQPEWHAGVIGIVAGRLR 376 Query: 379 ERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLE 438 ER+HRP IAFAP GDG L+GSGRSI GLH+RD+L P ++ +FGGHA AAGL L Sbjct: 377 ERYHRPAIAFAPVGDGFLQGSGRSIAGLHLRDSLADCVARAPHLLERFGGHAAAAGLRLR 436 Query: 439 EDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEP 498 F + ++ E L L+ V DGPL + + +E+A+ L AGPWG FPEP Sbjct: 437 RAHLDEFVALWNTVLAERLTTEDLEESVFHDGPLESSSLDLELARRLEAAGPWGNGFPEP 496 Query: 499 LFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDI 558 LF G FR+ +++ + H ++ ++ G G + I F L P V + Y ++ Sbjct: 497 LFWGRFRICERKALPGGHWRLHLDD-GAGRRFEAIRFR-SPELPPGPWVEAL---YVPEV 551 Query: 559 NEFRGNRSLQI 569 N + G LQ+ Sbjct: 552 NRYAGTERLQL 562 >UniRef50_A2SJG6 Exonuclease RecJ n=8 Tax=Proteobacteria RepID=A2SJG6_METPP Length = 581 Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust. Identities = 261/570 (45%), Positives = 367/570 (64%), Gaps = 27/570 (4%) Query: 20 AELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGD 79 A + PLL RL+A+RG+ +A++L+ S+ +LP L G A +L +A ++ RI+VV D Sbjct: 19 AGVSPLLARLFAARGITAAEQLDDSLALLLPPTALLGAADAARLLADATQQRRRIVVVAD 78 Query: 80 FDADGATSTALSVLAMRSLGCS--NIDYLVPNRFEDGYGLSPEVVDQAHA----RGAQLI 133 +D DGAT+ A+++ +R LG + + Y+VP+R GYGL+P +VD A + ++ Sbjct: 79 YDCDGATACAVALRGLRLLGATPETLGYVVPDRQVHGYGLTPAIVDLAFGVFGGQAPDVL 138 Query: 134 VTVDNGISSHAGVEHARSLGIPVIVTDHHLPG-----DTLPAAEAIINPNLRDCNFPSKS 188 VTVDNGI+S GV HA++ G+ V+VTDHHLP LP A+ I+NPN C F SK+ Sbjct: 139 VTVDNGIASLDGVAHAKARGLQVLVTDHHLPALQDDRVVLPTADVIVNPNQPGCPFESKA 198 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 LAGVGV FY++LALR+ LR +G FD A P L LLDLVALGTVADVV LD NNR L Sbjct: 199 LAGVGVMFYVLLALRSELRSRGVFDA--AAQPRLDALLDLVALGTVADVVKLDENNRRLV 256 Query: 249 WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 308 QG+ RIR+G+ +PG++AL + A RD + + D GFALGPRLNAAGR+++M++G+ LL Sbjct: 257 AQGLRRIRSGRMQPGVRALFDAAARDPARASGFDFGFALGPRLNAAGRMENMTLGIECLL 316 Query: 309 CDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD------TLPGGLAMYH 362 D+ G A LA +LDA+N+ R+E+E GM+ +A + E L D P LA+Y Sbjct: 317 TDDAGRAAELAQQLDAINRERREVESGMREQAEAMLEALVARDDHGAGAGDPPPALAIYD 376 Query: 363 PEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGM 422 P +H+GVVGI+ASR+K+R HRP FA DG LKGSGRSI G H+RDAL+ + +PG+ Sbjct: 377 PGFHEGVVGIVASRLKDRSHRPTFVFARGQDGLLKGSGRSIPGFHLRDALDLVSKRHPGL 436 Query: 423 MLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVA 482 + +FGGHAMAAG +L E F F++ ++ EWLD + LQ + +DGPL + Sbjct: 437 LRRFGGHAMAAGATLAEADFARFERALVQVAGEWLDAAALQRTLRTDGPLGAEYFNADTV 496 Query: 483 QLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALW 542 + L +A WGQ F P+F ++ QRLVGE+HLK+ V GG L D I F + Sbjct: 497 RAL-EAQVWGQAFEPPVFSDRVEVVSQRLVGEKHLKLAVRH--GGALRDAIWFGHSEPV- 552 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIID 572 +V LAY+L ++E+ G + +Q+I++ Sbjct: 553 ----AAQVTLAYQLRVDEYNGRQRVQMIVE 578 >UniRef50_C6NXH8 Single-stranded-DNA-specific exonuclease recJ n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NXH8_9GAMM Length = 539 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 211/528 (39%), Positives = 312/528 (59%), Gaps = 22/528 (4%) Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++AV + A R ++VGD+D DGA ++A +L G + +VPNRF +GYG Sbjct: 1 MKEAVAWIAYAVRHQWPTVIVGDYDVDGACASA--ILRGSLSGLLPVTSIVPNRFTEGYG 58 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+P +VD+ A +L++TVDNG+S+HAGV A+ G+ V+VTDHHLPG P A+ I+N Sbjct: 59 LTPAIVDRI-APETKLVITVDNGVSAHAGVAAAKQRGMTVLVTDHHLPGPLRPPADVIVN 117 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 PN C FP KS G VA+YL+LAL W + +DLVAL TVAD Sbjct: 118 PNQPGCPFPWKSTCGTAVAWYLVLALHQ--THPHWIGREQVE-----SQIDLVALATVAD 170 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V L+ NNR+L G+ RIR GK PG+ + +A + + D F +GPRLNAAGR Sbjct: 171 LVKLERNNRVLVANGLRRIREGKINPGLSGIATMAQIELSTIREQDFAFKIGPRLNAAGR 230 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L DM G+ LLL + + + L+ +N RKE++ ++ EA+ + + S D + Sbjct: 231 LADMQTGIHLLLSRDAEQVERWSRFLETVNAQRKEVQAQIEQEAVEIVNGMSDSGDPV-- 288 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTL-KGSGRSIQGLHMRDALERL 415 L + WH GVVGI+A ++KERF RP G+G L +GSGRS+ G H+RDAL RL Sbjct: 289 -LCVGSDHWHSGVVGIVAGKLKERFERPAFVLTATGEGDLAQGSGRSLDGWHLRDALARL 347 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 DT +PG++ ++GGHAMAAGLS+ + +F F+ ++ E + L +V DGPLS A Sbjct: 348 DTEHPGILQRYGGHAMAAGLSIPKSRFDAFRAGINGVLLEQVPTGALHRQVHCDGPLSAA 407 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLV--GERHLKVMVEPVGGGP--LLD 531 E T+E+A+ + AGPWGQ FPEPLF+ F + R + G L + +E P L++ Sbjct: 408 ECTLEMARAIEAAGPWGQGFPEPLFENTFVVESARTMKGGHWKLHLRLEDSSSVPTNLVE 467 Query: 532 GIAFNVDTALWPD---NGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + F + P+ +G+R ++ Y+L +N ++G +LQ+ I + +P Sbjct: 468 AVHFLDGKEVAPEPPPSGLR-IRAQYRLQVNRWQGREALQLQIHSAYP 514 >UniRef50_A1U815 Phosphoesterase, RecJ domain protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U815_MARAV Length = 660 Score = 331 bits (848), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 233/649 (35%), Positives = 329/649 (50%), Gaps = 94/649 (14%) Query: 8 RRREVDETADLPAELPPLLRRL----YASRGVRSAQELERSVKGMLPWQQLSGVEKAVEI 63 + RE+ T PA P +R+L +A+RG + K ++ L+ KA Sbjct: 17 QSREIVTTG--PAVENPAVRQLKEHIFANRGASYPETYHP--KHLVSPTLLTDALKAAVR 72 Query: 64 LYNAFREGTRIIVVGDFDADGATSTAL---------SVLAMRSLGCSNIDYLVPNRFEDG 114 L +A EG II V DFD DGAT A+ LA + +++ ++P+RF G Sbjct: 73 LSDALLEGQTIICVADFDCDGATGAAIFNRCMKRFADTLAAFRMPKASLHTVIPDRFRYG 132 Query: 115 YGLSPEVV-DQAHARGAQLIVTVDNGISSH---------AGVEHARSLGIP-VIVTDHHL 163 YGL P + D+ +IVT+DNGISSH GV A G P VI+TDHH Sbjct: 133 YGLKPRLAEDKIKPLYPDVIVTIDNGISSHDAVTRISQWQGVSSANPNGAPDVIITDHHA 192 Query: 164 PGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERN------I 217 G+TLP A A++NPN +DC FPSK+LAG GVAFY+ML +R L + + R I Sbjct: 193 QGETLPTAFAVVNPNRKDCPFPSKALAGCGVAFYMMLLVRQTLISRLKRNSRTSAAAGGI 252 Query: 218 AIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRP------------GIK 265 A + DLVA+GT+ D+VP+D NNRI+ G+ RI G P G++ Sbjct: 253 AAVQINHFADLVAVGTIGDMVPMDLNNRIMVKVGLDRINKGLQMPARKAHLDGYLSFGVR 312 Query: 266 ALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDAL 325 ALLE AN + + ASD+ F + PR+NA GRL+ + G+ LL + A + A+ L Sbjct: 313 ALLEAANV-SYPVTASDIAFQVVPRINAVGRLETPTAGIECLLSETQMMAGIEADRCHKL 371 Query: 326 NQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPV 385 N+ RK +++ MQ EA L + DT + +++P WH G+VG++AS IKER V Sbjct: 372 NEERKSVQRTMQQEADEALASLSDTPDTETPCVVLHNPSWHPGIVGLVASGIKERTKGAV 431 Query: 386 IAFAPAGD-----GT---------LKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 I FAP GD GT LKGSGRS +H+RD L + P +M++FGGHA Sbjct: 432 ICFAPEGDPNAKPGTPEADGDPDWLKGSGRS-DNVHLRDTLAFVAAQAPDLMMQFGGHAR 490 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 AAGLSL + + F++ F + V L + L V +DG L PA + + PW Sbjct: 491 AAGLSLHKTELNRFKRLFAKAVEHSLTAAPLVNPVYADGAL-PAHLRDHAFAAWIERQPW 549 Query: 492 GQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD---TALWP-DNGV 547 G +FPEP F +F++++ VG H K++V PL N D T ++P +G Sbjct: 550 GNLFPEPTFTQNFKVIRAAGVGTAHQKLLVMDADEQPL-----SNTDQNGTTIYPVSHGA 604 Query: 548 R----------------------EVQLAYKLDINEFRGNRSLQIIIDNI 574 + V++ Y L IN FRG +Q I +I Sbjct: 605 KAIPMLWFFSRDEENPDTVAPGSAVRVTYTLTINRFRGQNEIQAIAKSI 653 >UniRef50_C1SHI0 Exonuclease RecJ n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHI0_9BACT Length = 592 Score = 330 bits (845), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 200/580 (34%), Positives = 317/580 (54%), Gaps = 24/580 (4%) Query: 8 RRREVDETADLPAEL--PPLLRRLYASRGVRSAQELE----RSVKGMLPWQQLSGVEKAV 61 R+ E + ++L EL P + R + +A L+ +KG+ + +EKA Sbjct: 16 RKPECSDISELADELGMPVCITEALYKRELFNADVLDAYFKTPLKGISSPFLIKDMEKAA 75 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 + + + T+I + GD+D DG TS AL L ++ +G +++ Y +PNR ++GYGL+ Sbjct: 76 AAIAESIKNNTKICIYGDYDVDGVTSVALMFLFLKEVG-ADVTYYIPNRLQEGYGLNKTA 134 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLP-AAEAIINPNLR 180 + G++LI+TVD GI++ V++A S+G+ VI+TDHH P +++P A A++NP Sbjct: 135 IKDIAEAGSRLIITVDCGINAMEEVQYAVSMGVEVIITDHHQPSESIPEGAAAVVNPMRE 194 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 D K L+GVGVAF L++ALR L + G F + IPN+ + LDLV LGT+ADVVPL Sbjct: 195 DDTSAFKGLSGVGVAFKLVMALRYKLNESGRFKGK---IPNIKKYLDLVTLGTIADVVPL 251 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 NRI+ G+ + CRPG++ L VA D QK+ + +GF L PR+NA GR+ Sbjct: 252 VGENRIIVRHGLEILSGKNCRPGLRELKRVAGIDGQKVTTTHVGFGLAPRINAVGRMGAS 311 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 G+ LL+ ++ ++ LA ELD N++R++IE+ + E+ EK + GL + Sbjct: 312 DKGLRLLITNDREQSLYLAEELDKENKSRQDIERHIIEESFKRVEKNKLHEKY--KGLVL 369 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 Y EWHQGV+GI+ASR+ E+++ P I DG KGSGRSI + LE++ + Sbjct: 370 YSEEWHQGVIGIVASRLVEKYNLPAIVLTFE-DGVGKGSGRSIPSFDLYKGLEQMQDI-- 426 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 +L FGGH AAGL +EE Q+RF + V + L+P E+ D + P++++ E Sbjct: 427 --LLSFGGHKYAAGLRIEEQHITSLQKRFHKAVEDLLEPKDFVAELKIDALMEPSDVSSE 484 Query: 481 VAQLLRDAGPWGQMFPEPLF--DGHFRLLQQRLVGER--HLKVMVEPVGGGPLLDGIAFN 536 + + L P+G EP+F G + + VG HLK+ +E G + D I +N Sbjct: 485 LMKWLGRMEPYGAGNREPVFCMRGVNKHQEPVFVGRESMHLKIFLEK--NGKVFDCIGYN 542 Query: 537 VDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + G + + + R Q+++ +I P Sbjct: 543 MKAYKDVVYGNESFDIVFSPAATGYYHGRYTQLVLKDIKP 582 >UniRef50_A4J2G7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2G7_DESRM Length = 885 Score = 330 bits (845), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 208/533 (39%), Positives = 301/533 (56%), Gaps = 26/533 (4%) Query: 46 KGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDY 105 K PW + ++KAVE + A +G +I+V GD+D DG T T + VLA+R LGC DY Sbjct: 55 KMFSPWL-MQDMKKAVERILGARDKGEQILVYGDYDVDGITGTTVLVLALRRLGC-KADY 112 Query: 106 LVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG 165 +P+R E+GYGL+ +++A RG L+VTVD GIS VE A++LG+ V++TDHH P Sbjct: 113 FIPHRLEEGYGLNKVALERAVERGVSLVVTVDCGISGAEEVEVAKALGLEVVITDHHEPP 172 Query: 166 DTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAEL 225 LPAA AI++P C++P K LAGVGVA L+ QG F++ ++ N E Sbjct: 173 VQLPAAVAILDPKRSGCSYPFKELAGVGVALKLI---------QGLFEQAGLSQRNWEEY 223 Query: 226 LDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGF 285 LDLV LGTVAD+VPL NRIL G+ +I K RPG++AL++V+ A+ L +LGF Sbjct: 224 LDLVCLGTVADIVPLQGENRILVKHGLPQISNSK-RPGLQALIKVSGIKAEVLGTRELGF 282 Query: 286 ALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCE 345 L PRLNAAGR+ D +GV LLL +++ A +A ELD N R+++E + EAL L Sbjct: 283 GLAPRLNAAGRMGDAGLGVELLLAEDLLVAEEMAEELDRGNHERQQVESKVLSEALAL-- 340 Query: 346 KLERSRDTLPGG-LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQ 404 LE + G L + WH GV+GI+ASR+ +RF+RPV + +G KGS RSI Sbjct: 341 -LETDSEISQGKVLVLASENWHPGVIGIVASRLVDRFYRPVFMISLE-EGKGKGSARSIP 398 Query: 405 GLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQG 464 G ++ A+ + +FGGHAMAAG S+ DK F++ + E+L L Sbjct: 399 GFNLYQAMVSCQD----HLEQFGGHAMAAGFSIHVDKINEFRKTINAMAEEFLSEEHLTP 454 Query: 465 EVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGER--HLKVMV 521 + D ++ +++M+ Q L P G P P+ ++ R VG+ HLK+ V Sbjct: 455 NLDLDALINLNDLSMDTVQELNQLSPLGHCNPGPILGCCQATVINCREVGKNGGHLKMRV 514 Query: 522 EPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +LDGI FN+ + V +A+ IN + G S+Q+ + + Sbjct: 515 RE--DHTVLDGIGFNLASYSEMLAANDTVDMAFIPSINVWNGRTSVQLEVKEL 565 >UniRef50_Q3A3C6 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Desulfuromonadales RepID=Q3A3C6_PELCD Length = 574 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 213/536 (39%), Positives = 307/536 (57%), Gaps = 41/536 (7%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 ++ ++KAVE L A +I V GD+D DG + TAL V +R+ G + + Y +P R +D Sbjct: 65 MADMDKAVERLAQAVCNREKIAVHGDYDVDGISGTALLVETLRAFG-ARVSYHIPLRLKD 123 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG+S ++ GA L VTVD G+S+HA A LG+ +I+TDHH +TLPAA A Sbjct: 124 GYGVSAAALEDCATHGATLAVTVDCGVSAHAQAMRAAELGLDLIITDHHQVPETLPAALA 183 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 I+NP+ DC +P K+LAGVGVAF L++ALR LRD G + + + P+L LDLVALGT Sbjct: 184 IVNPSRPDCGYPFKNLAGVGVAFLLLVALRKHLRDLGHW--KTVCEPDLRYGLDLVALGT 241 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +AD+VPL NR LT G+ + + R G++AL +VA D K+ +GF L PR+NA Sbjct: 242 IADIVPLKGLNRALTKAGLE-LLSHSGRAGLQALKKVAGVD--KVTCGSIGFRLAPRINA 298 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGRL+D +VGV LLL +++ +A A LD +N R+ IEQ TL + ER R Sbjct: 299 AGRLEDGAVGVELLLQESVQDAMATAEMLDRVNSDRQAIEQQ------TLEQADERWRQR 352 Query: 354 LPGG---LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRD 410 G + + WH GV+GI+ASR+ E++HRP I A +G KGSGRSI+GLH+ Sbjct: 353 SSGATHSIVLADERWHPGVIGIVASRLVEKYHRPTILIA-LNEGVGKGSGRSIKGLHLYQ 411 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 AL G FGGH AAGL+++ + + F + F +L + L P L+ DG Sbjct: 412 ALSDCQAFLQG----FGGHEYAAGLTIDAGRVEAFARDFEKLARQTLSPEDLRFRQFHDG 467 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG---HFRLLQQRLVGERHLKVMVEPVGGG 527 +S E+ ++ L P+G P+P++ H + +Q+ VG++HL+ + GG Sbjct: 468 EVSLEEIDLDSIDELSRLAPFGPGNPQPVYLARGVHLQSVQR--VGDKHLRFIA--CQGG 523 Query: 528 PLLDGIAFNVDTALWPDNGVREVQLAYKLDI------NEFRGNRSLQIIIDNIWPI 577 L IAF + R+ QLA DI NE+R S+Q+ + +I P+ Sbjct: 524 HGLPCIAFGM--------AERQAQLAGPQDILFTPQRNEWRERVSVQLQVRDIRPV 571 >UniRef50_B3E2R5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Geobacter lovleyi SZ RepID=B3E2R5_GEOLS Length = 586 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 213/582 (36%), Positives = 326/582 (56%), Gaps = 38/582 (6%) Query: 1 MKQQIQLRRREVDETADLPAE--LPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQL 54 M +Q L++ + A L A L + + +SRG+ ++ L ++ ML + Sbjct: 14 MHKQWILKQTDPATVAALSAATGLSAVTASILSSRGLTEPEQVASFLSPTLAAMLDPFLM 73 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +G+E+AV L A + + GD+D DG ++TAL V +R++G N+ Y +PNR EDG Sbjct: 74 AGMEQAVVRLVAARAAKETVCIYGDYDVDGISATALLVSGLRAMGL-NVTYHIPNRMEDG 132 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YGL+ + + RG +L ++VD G+++ RS+G+ +I+TDHH P D LP A A+ Sbjct: 133 YGLNGDALRLIKERGIELAISVDCGVTAIEEAILCRSIGLDLIITDHHQPLDQLPDAIAV 192 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 INP+ RDC++P K LAGVGVAF L++ALR+ LRDQG F + P+L + LDLVALGT+ Sbjct: 193 INPHRRDCSYPFKGLAGVGVAFNLLVALRSRLRDQGAFGDNG---PDLRQWLDLVALGTI 249 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+VPL NR+LT G+ R+ G CR G+ AL +VA + +++ +GF L PRLNA Sbjct: 250 ADLVPLVEQNRLLTSAGLQRMGDG-CRIGLAALKQVAGIKGE-VSSGQVGFQLAPRLNAV 307 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRL+ GV LLL ++ +A L+ ELD N R+++E+ + EA+ E +D Sbjct: 308 GRLESAVPGVELLLTEDPQQAAALSAELDGANLERRQVERRIFDEAIAQIEAQGGLQDR- 366 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 + + P+WHQGVVGI+ASR+ ER++RP + A D + KGSGRSI G H+ +AL Sbjct: 367 -NSIVLSSPDWHQGVVGIVASRLVERYYRPTLLVAERDDASGKGSGRSISGFHLLEALHE 425 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + ++GGH AAG+++E + F F + L L E+V D ++P Sbjct: 426 C----ADFLQRYGGHRAAAGVTVEPGQMAAFADAFEQAALTRLGDQELIPELVLDVEVAP 481 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGERHLKVMVE-------PVGG 526 ++T + L+ GP+G P L ++L R GE HL + ++ +G Sbjct: 482 RDLTSALVAELQRLGPFGMGNTTPVLLLRQMQVLDCRCFGEGHLNLRLQRDGLQFKALGW 541 Query: 527 G------PLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFR 562 G P L +A V W NG ++ +L++ +FR Sbjct: 542 GMAERTVPALVDLACTVKLETW--NGREQL----RLELKDFR 577 >UniRef50_C4V0G0 Possible single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Selenomonas RepID=C4V0G0_9FIRM Length = 671 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 215/586 (36%), Positives = 322/586 (54%), Gaps = 55/586 (9%) Query: 10 REVDETADLPAEL--PPLLRRLYASRGVRSAQELERSVK-GMLPWQQ---LSGVEKAVEI 63 + DE L AE+ P++ +L RG+R+A+E + P+ ++ +E+ E Sbjct: 18 QHTDEGDALAAEIGVTPIIGQLLWQRGIRTAEEARAFLHPADTPFHDPFLMADMERGAER 77 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 + A R I++ GD+D DG T+TAL + ++R+LG N+ Y +PNRF +GYGL+ + + Sbjct: 78 VLCAVRRDEPIVIYGDYDVDGMTATALLMRSIRTLG-GNVSYYIPNRFTEGYGLNADALQ 136 Query: 124 QAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 Q G +L+VTVD GI+S V A G+ +++TDHHLPG LP+A A++NP+ DC Sbjct: 137 QIAGEGCRLLVTVDCGIASVDTVAEATG-GMDIVITDHHLPGQMLPSAYAVMNPHRADCA 195 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 +P K+LAGVGVAF L+ AL W ER + AE LD+ ALGTVAD+VPL Sbjct: 196 YPEKNLAGVGVAFKLVQAL--------WQMERE---ESFAEYLDIAALGTVADLVPLVGE 244 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NR + G+ ++ C GI+AL+EVA + + +GF L PRLNAAGRL+ G Sbjct: 245 NRKIVQMGLRQMAEHPC-VGIRALIEVAGLADKSINTGQVGFQLAPRLNAAGRLETARHG 303 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG--GLAMY 361 LLL ++ A +A EL+ALN R+++EQ + L E + D P + + Sbjct: 304 AELLLTEDTACASRMAGELNALNTERRDLEQDI------LAEAERQLADFTPDVPAIVVA 357 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL-DTLYP 420 EW+ GV+GI+ASR+ E+++RP I D KGS RSI GLH+ +AL DTL Sbjct: 358 GEEWNAGVIGIVASRLVEKYYRPSIVLTRR-DDVYKGSCRSIAGLHLYEALSACRDTL-- 414 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 ++FGGHAMAAGL+L ++ F++ F E V L +V +PA+ T+E Sbjct: 415 ---IQFGGHAMAAGLTLSCERLSDFRRAFSEAVRTRLTAQDFIPKVAVSALAAPADWTVE 471 Query: 481 VAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNV 537 + L P+G P P+F + R + +G +HL++ + G + Sbjct: 472 TVEELALLEPYGMGNPRPIFGVRNVRPQKASSIGAEGKHLRMDI----------GTREHH 521 Query: 538 DTALWPDNG-------VREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 TAL+ + G + LAY INE++G RS+Q ++D + P Sbjct: 522 ITALYWNAGDLATVLTEEDSDLAYTPSINEWQGERSVQCMVDTVTP 567 >UniRef50_B8CXF2 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXF2_HALOH Length = 814 Score = 315 bits (806), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 201/593 (33%), Positives = 334/593 (56%), Gaps = 41/593 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELER----SVKGMLPWQQLSG 56 MK++ Q ++++D + + +L P+L+ + SRG+ E+ R ++ + + Sbjct: 1 MKKKWQFIKQKLDGSLN---DLEPVLQSILYSRGITDRDEINRFLSCRIQDLHSPFLMKD 57 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + KAV+ + A G +IIV GD+D DG TSTAL L + +DY +PNR ++GYG Sbjct: 58 MGKAVDRILTAIESGEKIIVYGDYDVDGITSTALLFLYFKKRLGYEVDYYLPNRLKEGYG 117 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ E +D+ + L++TVD GIS VE+A G+ VIVTDHH P LP A A+++ Sbjct: 118 LNKEALDKIINKNYDLMLTVDCGISGLEEVEYATRKGLEVIVTDHHQPAKKLPPAIAVLD 177 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P+ +D +P K LAGVGVAF L AL ++ D L L+D+V+LG++AD Sbjct: 178 PHRKDDKYPFKYLAGVGVAFKLCQALEKEIKGHEISD-------FLLRLIDIVSLGSIAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +VPL NRI+ +G+S + + G++ L++ + D + L A +G+ + P LNAAGR Sbjct: 231 IVPLLGENRIIVKRGLSELNDTSNK-GLRVLMDKLSLDGKDLNAGHIGYIMAPPLNAAGR 289 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK-LERSRDTLP 355 ++D S+G+ LL D+I +A+ +AN L LN++R+ E+ + +A+ + EK ++ ++D Sbjct: 290 MEDPSLGIELLTTDSIDKAKEIANRLINLNKSRQAEEEEIFEDAVKMIEKTVDLNKDK-- 347 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 G+ + P+WH GV+GI+ASR+ E+++RPVI + DG KGS RSI+GL++ AL+ Sbjct: 348 -GIVLASPDWHHGVIGIVASRLVEKYYRPVIMISLE-DGIGKGSCRSIEGLNIYKALD-- 403 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 +L +GGH AAGL++ ++ + F+ F + V L P L + D L P Sbjct: 404 --FCSSYLLSYGGHEQAAGLAINKEDIEQFRDTFLDYVDSVLSPEDLIPVLKLDSILKPG 461 Query: 476 EMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDG 532 ++ + + L+ P+G P+P F + + + R VG +HLK ++ L G Sbjct: 462 QINLNFYKTLKQLEPYGVGNPKPRFFLSNMQFNKLRTVGRDGKHLKFTLDKG-----LKG 516 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQI-IID-------NIWPI 577 I F+ L ++V LA+ L +N + G +++ ++D N +PI Sbjct: 517 IGFDFGDKLIEFKN-KKVDLAFYLTLNTWNGAEEVELQLLDVNVKESINYYPI 568 >UniRef50_Q39XC5 RecJ exonuclease n=6 Tax=Desulfuromonadales RepID=Q39XC5_GEOMG Length = 578 Score = 313 bits (801), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 222/563 (39%), Positives = 313/563 (55%), Gaps = 28/563 (4%) Query: 20 AELPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRI 74 + + P L L A+RG+ + R + L P+ L G+E+AV L A + Sbjct: 26 SSVDPFLAALLANRGIADGESARRFLSSSLGDVSDPFL-LKGMEEAVARLCAARARRETV 84 Query: 75 IVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV 134 V GD+D DG T+TAL V R++G Y +P R E+GYGLS + + + A AQ++V Sbjct: 85 CVYGDYDVDGITATALLVSFFRAVGIRCF-YHIPKRLEEGYGLSVDGLRKV-AEQAQVVV 142 Query: 135 TVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGV 194 TVD G+++ A E +LG+ +++TDHH PG +P A A+INP C++P KSLAGVGV Sbjct: 143 TVDCGVNAVAEAELCLTLGVDLVITDHHTPGPAIPKACAVINPLQPGCSYPFKSLAGVGV 202 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 AF +M+ALR LR +G F N PNL E LDLVALGT+ADVVPL NRI G+ Sbjct: 203 AFNVMVALRGRLRAEGAFAGGN--GPNLREYLDLVALGTIADVVPLVGENRIFVKYGLRE 260 Query: 255 IRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 + A R G+KAL +VA ++ +GF L PRLNAAGR++D + GV LLL G Sbjct: 261 LSASS-RVGVKALKDVAGVTG-AVSCGAVGFRLAPRLNAAGRMEDAAAGVELLLETEPGR 318 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG--GLAMYHPEWHQGVVGI 372 A +A ELDA N R+ +E+ + +AL + + G + + WH GV+GI Sbjct: 319 AAAIAAELDANNDERQALERQILTDALGRVQ----GNTAMEGRKSIVLASAAWHPGVIGI 374 Query: 373 LASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMA 432 +ASR+ + FHRP + A +G +GSGRSI G H+ DAL ++KFGGH A Sbjct: 375 VASRMVDLFHRPTVLIALQ-EGNGRGSGRSIPGFHLYDALGAC----ADQLVKFGGHRYA 429 Query: 433 AGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWG 492 AGLS++E +LF RF E+ L L + D LS ++T +A L P+G Sbjct: 430 AGLSIDEPTLELFVDRFEEVAAGLLSADDLIPVLRVDAVLSAQQVTAGLADALSSLEPFG 489 Query: 493 QMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQ 551 PEPLF ++++ V HLKV + GGG D I FN+ T D+ V Sbjct: 490 AGNPEPLFVLKDMEIVRRWAVRGNHLKVRLS--GGGFTFDAIGFNLATK--EDSLPDLVD 545 Query: 552 LAYKLDINEFRGNRSLQIIIDNI 574 + + L NE+ G ++LQ+ + +I Sbjct: 546 IVFTLGWNEWNGRKTLQLSLKDI 568 >UniRef50_C6P9C5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P9C5_CLOTS Length = 819 Score = 311 bits (797), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 186/572 (32%), Positives = 321/572 (56%), Gaps = 42/572 (7%) Query: 14 ETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFR 69 E + +L + + +RG ++++ + L L G+EKA ++ Sbjct: 17 EKIKIKYKLKEYIAQTIVNRGYDDLKKVDEYLNPDLNMMHSPFLLDGIEKASSVIKYHIE 76 Query: 70 EGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARG 129 + +I + GD+D DG T T++ ++ LG +++++ +P+R ++GYG++ +++ + G Sbjct: 77 KNNKITIYGDYDVDGITGTSILYKTLKKLG-ADVNFYIPDRLQEGYGINLNAIEKIYNLG 135 Query: 130 AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSL 189 + LI+TVD GI+S VEHA+ LGI +IVTDHH D LP A +INP++++C +P + L Sbjct: 136 SSLIITVDCGITSVIEVEHAKKLGIEIIVTDHHQVPDVLPDATCVINPHIKNCTYPYREL 195 Query: 190 AGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTW 249 +GVGVAF L LAL + D + LD+VALGTVAD+VPL NRI+ Sbjct: 196 SGVGVAFKLCLAL---IGDDAL------------DYLDIVALGTVADIVPLTGENRIIVK 240 Query: 250 QGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLC 309 +G+ ++ K + G+KAL+ V+ + + + +GF L PRLNAAGRL+ V LL Sbjct: 241 EGLKMMKNSKNK-GLKALINVSGLNNKDINTYHVGFVLAPRLNAAGRLESAVSCVNLLTT 299 Query: 310 DNIGEARVLANELDALNQTRKEIEQGMQIEALTLCE-KLERSRDTLPGGLAMYHPEWHQG 368 D+ EA +A L++ N R+E+E+ M EA+ E K++ ++ + +Y +WH G Sbjct: 300 DDDIEANRIAEYLNSENIKRQELEKKMLDEAIVQVETKIDLDKEKF---IVLYSEDWHPG 356 Query: 369 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG-MMLKFG 427 ++GI++SRI E+++RP I + GD T KGSGRSI+G ++ DA++ Y G ++ FG Sbjct: 357 IIGIVSSRITEKYNRPSILISICGD-TGKGSGRSIKGFNIYDAIK-----YAGDCLIGFG 410 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRD 487 GH MAAG+++++D+ + F+ + E L+ L + + + + +E A L Sbjct: 411 GHEMAAGITIKKDEIESFKDKLNEYAESKLNDIDLIPTIEIETSIENETIDLEGANQLSL 470 Query: 488 AGPWGQMFPEPLF-DGHFRLLQQRLVG-ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDN 545 P+G P P + H + Q VG +HL+++ + D I F++ + N Sbjct: 471 LEPFGNSNPMPAYIINHLHVKQTYTVGNNKHLRIIAQK--NDMCYDIILFHMGSEA---N 525 Query: 546 GVRE---VQLAYKLDINEFRGNRSLQIIIDNI 574 +E + +A +++NE+ G++ ++II +I Sbjct: 526 KFKEGYIIDIAGYINVNEWNGDKKVEIIAKDI 557 >UniRef50_B2RMC6 Single-stranded-DNA-specific exonuclease n=53 Tax=Bacteria RepID=B2RMC6_PORG3 Length = 584 Score = 310 bits (795), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 191/569 (33%), Positives = 313/569 (55%), Gaps = 36/569 (6%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIV 76 L P++ L A RG+ S +E +R + L P+ + ++KAV L A +I++ Sbjct: 27 LAPVVGCLLARRGIASVEEAKRFFRPRLEDLHDPFL-MKDMDKAVARLNRAVGRKEKIMI 85 Query: 77 VGDFDADGATSTALSVLAMRSLGCS--NIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV 134 GD+D DG T+ AL +R+ GCS +DY +P+R+++GYG+S +D AH+ G +LI+ Sbjct: 86 YGDYDVDGTTAVALVYKYLRATGCSETQLDYYIPDRYDEGYGISYRGIDLAHSLGTKLII 145 Query: 135 TVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGV 194 +D GI + V +A+SL I I+ DHH P +TLP A A+++ D +P + L+G GV Sbjct: 146 VLDCGIKAVEKVAYAKSLDIDFIICDHHNPDETLPDAVAVLDAKRADNTYPYEHLSGCGV 205 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 F M Q + N+ L LLDLVA+ +D+VP+ NRIL + G+ + Sbjct: 206 GFKFM---------QAYARSNNLPESKLLPLLDLVAVSIASDIVPIMGENRILAYYGLRQ 256 Query: 255 IRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 + C G++A+++V +++ +D+ F +GPR+NA+GR+ + V LLL + E Sbjct: 257 LNKRPCL-GLQAIIDVCGLKKRRIDMNDIVFKIGPRINASGRMMNGGKAVELLLSQDAVE 315 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILA 374 A+ +D N R+E+++ + +A+ + +L D L +Y PEWH+GV+GI+A Sbjct: 316 AQSRTANIDEYNDQRRELDKDVTEQAIDILGELS---DVDKKILVIYRPEWHKGVIGIVA 372 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 SR+ ER+ RP I +GD + GS RS+ G + A+E L ++ FGGH A+G Sbjct: 373 SRMTERYSRPTIVMTKSGD-FISGSARSVGGFDVYKAIEHCKDL----LVNFGGHPFASG 427 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 L+++E+ + F++ + E + P LL ++ D +S E+ ++ L+ GP+G Sbjct: 428 LTIKEENLETFRKMITDYAEEAVSPELLVPQIDVDAEISIEEVNYKLLDNLKRMGPFGPE 487 Query: 495 FPEPLFDGH--FRLLQQRLVGE--RHLKVMVEPVGGGPL--LDGIAFN-VDTALWPDNGV 547 +P+F + R VG+ HLK+ V VG G + GIAFN NG Sbjct: 488 NSKPVFISRQLYDAGGSRAVGKASEHLKIDVR-VGSGERHPVSGIAFNQAGHCNEIKNG- 545 Query: 548 REVQLAYKLDINEFRGNRSLQIIIDNIWP 576 +L Y ++ NEF GN+SLQ+++ +I P Sbjct: 546 -SFRLCYTIEENEFNGNKSLQLLVRDIKP 573 >UniRef50_A7H9Y9 Single-stranded-DNA-specific exonuclease RecJ n=7 Tax=Deltaproteobacteria RepID=A7H9Y9_ANADF Length = 599 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 224/564 (39%), Positives = 303/564 (53%), Gaps = 33/564 (5%) Query: 24 PLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIVVG 78 P+ R+ A RG+ + E + L P+ + G++ AV L A G RI G Sbjct: 49 PVAARVLAGRGLADPADAEAFLASRLSELPDPFT-MKGMDAAVSRLVQAVEAGERIACYG 107 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DG TSTAL +R+ G + Y P+R +GYGL+ E V + A+GA+L+VT+D Sbjct: 108 DYDVDGVTSTALLCGFLRAAGADVVTY-TPHRLVEGYGLNTEAVRKLAAQGARLLVTLDC 166 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 GI+S V A +LG+ +V DHH LPAA AI+NP+ C +PSK LA VGV F L Sbjct: 167 GITSVEEVRAAAALGLDTVVVDHHTVPVELPAARAILNPHQPGCAYPSKGLAAVGVTFAL 226 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 +ALR LR++ A PNL + LDLVALGT+ADVVPL NRIL G+ I Sbjct: 227 AMALRRTLRER-GRFGGGRAEPNLKDALDLVALGTIADVVPLVGANRILVRWGLEAIAKS 285 Query: 259 KCRPGIKALLEVAN-RDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 + RPG+ AL VA + ++ A +GF L PR+NAAGRLDD GV LLL D+ AR Sbjct: 286 R-RPGLCALKRVAGIAEGGEVTAGQVGFRLAPRINAAGRLDDAGRGVRLLLSDDEATARA 344 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG---GLAMYHPEWHQGVVGILA 374 LA ELD N R+EIE+ + L E E +R + GL + WH GVVGI+A Sbjct: 345 LAEELDRENAARQEIERRI------LDEATEDARARVGAGVRGLVLARDGWHAGVVGIVA 398 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 SRI ERFHRP + A +G+ KGSGRSI+ H+ DAL G + +FGGH AAG Sbjct: 399 SRIVERFHRPAVLVALE-EGSGKGSGRSIEAFHLYDAL----AACSGHLARFGGHRHAAG 453 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 +++E F+ F L L DG L ++T +A+ L GP+G Sbjct: 454 VTVERGSLAAFRAAFEAHAAAQLAEEDLVPRCRIDGWLEERDVTERIAEDLAKLGPFGAG 513 Query: 495 FPEPLFDGHFRLLQQRLV--GERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQL 552 PEP+F + R V G HLK+ + G +D I F + L G V+ Sbjct: 514 HPEPVFALRGAATRARTVGAGNAHLKLAL-----GRGIDAIGFGMGDRLAACAG--PVEA 566 Query: 553 AYKLDINEFRGNRSLQIIIDNIWP 576 A+ L + + G R LQ+ + ++ P Sbjct: 567 AFTLGFDAWDGARRLQLKLRDVRP 590 >UniRef50_A5EVF0 DNA exonuclease RecJ n=2 Tax=Cardiobacteriaceae RepID=A5EVF0_DICNV Length = 556 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 195/557 (35%), Positives = 305/557 (54%), Gaps = 22/557 (3%) Query: 18 LPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 P + L+R +YA+R V + +E+ + ++ +LP + +EKA + L A + I++ Sbjct: 15 FPKDWHALVRAIYAAR-VDNPEEVAKPLRALLPPDSVPDIEKAAQRLLTAIVQRESILIF 73 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DGAT+TAL V + LG +DY +PNR GYGL+ + A L++TVD Sbjct: 74 GDYDVDGATATALCVSVIEQLG-GKVDYFIPNRQRHGYGLTVRGLKTLSTLPA-LVITVD 131 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 NGI S E ++ + +++TDHH TLP A+A++NPN ++ ++ +L+GVGVAFY Sbjct: 132 NGIRSFEAAEWLQAHNVALVITDHHQTDTTLPRAQAVVNPNRQEHHYLG-NLSGVGVAFY 190 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 ++L LR W+ + +L LDLVALGTVAD VPLD NNRIL G++R+R Sbjct: 191 VLLMLRRL-----WYQQFGNFPVDLNSYLDLVALGTVADKVPLDRNNRILVAHGIARMRT 245 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 G+ GI+AL+ V+N+ + + D+ F+L P LNA GRL +MS GVALLL + A Sbjct: 246 GQSNLGIQALIAVSNQTPEMMTTRDIDFSLAPILNAVGRLSEMSEGVALLLSADWQTACD 305 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 A L+ N++RK + M+ +A L+ + D + + Y +WH+G++GI+A+R+ Sbjct: 306 NAQYLERFNRSRKALTNEMERQA-----ALQINPDAVIA--SAYQADWHEGIIGIVAARL 358 Query: 378 KERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 + RP + + DG +KGS RSI G+ + L P ++FGGHAMAAG + Sbjct: 359 SQTLARPALVATQSDDGLGIKGSMRSIAGVDIHRLLIAAVADLPSDCIQFGGHAMAAGFT 418 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 + ++ + L + + + + + D L + + A L + PWG FP Sbjct: 419 VLKECYPLLLTALKQHFERQIGARVPEQPLYFDAELPIDLLQLSWAHFLENLEPWGAGFP 478 Query: 497 EPLFDGHFRLLQQRLVGERHLK-VMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYK 555 P F F + R +G H + V+ EP+ G L D F L V+ V Y+ Sbjct: 479 PPQFCNRFIVADCRALGAGHTRLVLREPINGQ-LFDATWFFHKEDLPSGTAVKVV---YQ 534 Query: 556 LDINEFRGNRSLQIIID 572 L+IN F G+ L ++I+ Sbjct: 535 LEINRFFGDERLNLLIN 551 >UniRef50_A6TQN7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TQN7_ALKMQ Length = 841 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 193/562 (34%), Positives = 304/562 (54%), Gaps = 30/562 (5%) Query: 24 PLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREGTRIIVVGD 79 P ++ +R V +E +R + L L ++KAV+ + A ++ +I + GD Sbjct: 27 PFTAQILTNRKVIDTREAKRFIDSSLEQLHDPFLLKDMKKAVDRIQEAIQKNEKIWIYGD 86 Query: 80 FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139 +D DG +ST++ + +++ S +DY +P+R ++GYG++ E + +RG LI+TVD G Sbjct: 87 YDVDGVSSTSIMLQYFKTIDFS-VDYYIPDRVQEGYGINQEAIQLIKSRGGNLIITVDCG 145 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199 I+S + A SL I +I+TDHH +P A AIINP DC++P S+ G G+A L+ Sbjct: 146 ITSFEEIALANSLSIDMIITDHHECQGAVPEAYAIINPKQHDCSYPFDSICGCGLALKLI 205 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 AL + + +D+VA+ TVAD+VPL NRI G+ + K Sbjct: 206 QALTP----------KEEFKSTIYLYIDIVAIATVADIVPLVDENRIFVKNGLQYMPDTK 255 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 G++ALLEV +KL A +GF+LGPR+NAAGR+ GV LL + E + LA Sbjct: 256 -NLGVQALLEVCKLKDRKLNAGHIGFSLGPRINAAGRIGSADSGVKLLTSSDPAEVQQLA 314 Query: 320 NELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKE 379 + L+ NQ R+EIE + EA+ + E + + L + WH GV+GI+ASRI E Sbjct: 315 HFLNEENQNRQEIEVKILDEAINMIES--SGQFNIDKVLVLAKEGWHHGVIGIVASRIVE 372 Query: 380 RFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEE 439 R+H+PVI A GD KGS RSI L++ +A+ + L+ LK GGH AAGL+L+ Sbjct: 373 RYHKPVIILAIEGDKA-KGSARSIPKLNLFEAMNQCKDLF----LKIGGHEQAAGLTLKS 427 Query: 440 DKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPL 499 + + F+ + ++V + L P ++ DG LS + + L + P+G P P Sbjct: 428 ENIEAFRMKINDIVNQTLSPEDFIAQIHCDGLLSLDVVEDSLIDELGNLEPYGMGNPSPK 487 Query: 500 FDGH-FRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNV-DTALWPDNGVREVQLAYK 555 F G+ F ++ R VG +HLK+ + +D I FN D + + G + + L Y Sbjct: 488 FIGYDFTIVDIRAVGVDGKHLKLKLG--SKSKQVDAIGFNFGDYSDHIEQGDK-IHLVYT 544 Query: 556 LDINEFRGNRSLQIIIDNIWPI 577 + NEFRG +++Q+ I +I + Sbjct: 545 PEFNEFRGQKNIQLQIKDIKTV 566 >UniRef50_B2A2F5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2F5_NATTJ Length = 831 Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 193/527 (36%), Positives = 292/527 (55%), Gaps = 29/527 (5%) Query: 20 AELPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRI 74 + +L +L +RGV + +++ + PW L +++AVE++ + I Sbjct: 25 CNISTVLAQLLVNRGVTTPEQVADFLNPSFDSLHSPWL-LPDMKQAVELIDKIIKSNEPI 83 Query: 75 IVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQ--L 132 ++ GD+DADG T+TAL + S NI Y +P+RF+DGYGL+ V+ R Q L Sbjct: 84 LIYGDYDADGVTATAL-LYEYLSTKFDNIYYYIPDRFKDGYGLTNAGVNSVLERFPQCKL 142 Query: 133 IVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGV 192 I+TVD GI+S +E LG VIVTDHH LP+A A+INP + N+P K LAGV Sbjct: 143 IITVDCGINSIQEIEELNRLGKKVIVTDHHEQLGDLPSAHAVINPKIHTTNYPFKYLAGV 202 Query: 193 GVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGM 252 GVAF L+ AL + F+E L + LDLV +GT+AD+VPL + NRI +G+ Sbjct: 203 GVAFKLVSALAEQIETHYDFNEL------LKQYLDLVTIGTIADLVPLTSENRIFVSKGL 256 Query: 253 SRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNI 312 I + RPG+KAL+++ + ++ A +GF +GPR+NAAGRL V LL + Sbjct: 257 QYI--DERRPGMKALMDLLGLEYGEVKAGQVGFVIGPRINAAGRLASADEAVQLLTESSE 314 Query: 313 GEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG--LAMYHPEWHQGVV 370 AR LA +LD N+ R+++EQ + EA +++ + L G L ++ WH+GVV Sbjct: 315 SAARELAKKLDKENRERQKVEQKITKEA----DEMINRNNLLARGPVLVVWSENWHEGVV 370 Query: 371 GILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGH 429 GI+ASR+ E+++RPVI + G LKGS RSI G +M +AL+ D L ++K+GGH Sbjct: 371 GIVASRLLEKYYRPVIVLTRDDEPGKLKGSCRSISGFNMAEALKSCDNL----LIKYGGH 426 Query: 430 AMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAG 489 +AAGL LE F ++ L +WL L + D + +T E+A+ + Sbjct: 427 ELAAGLKLESAHLDEFIKQMNHLAQKWLSEDDLLPSIDIDMEIPEEALTRELAEEISQLE 486 Query: 490 PWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 P+G P+P+ GH ++ R VG+ + ++ +LDGI F Sbjct: 487 PFGMGNPQPVIGCGHIQVASTREVGKSSEHLQIKFKNNMGVLDGIWF 533 >UniRef50_C1A4A6 Single-stranded-DNA-specific exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A4A6_GEMAT Length = 599 Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 207/561 (36%), Positives = 295/561 (52%), Gaps = 30/561 (5%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIV 76 LP + RL +RG +R ++ L PW+ L E+AV + A R I V Sbjct: 41 LPESVCRLLVNRGYADVDAAKRFLRPRLEHIESPWR-LHDAERAVTRIAEAVRSQETIFV 99 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+D DG +STAL +R LG ++ VPNR DGY L P V A A GA+L++T Sbjct: 100 HGDYDVDGMSSTALLTRVLRDLGAHHVVPFVPNRLTDGYDLGPAGVRAAQAAGARLVITC 159 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D G S+HA V + GI VIVTDHHLPG +P A A+ NP C K LA VGVA+ Sbjct: 160 DCGTSAHAAVAELMTAGIDVIVTDHHLPGHGMPPAFAVCNPRHPACQSADKDLAAVGVAY 219 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAEL-LDLVALGTVADVVPLDANNRILTWQGMSRI 255 L LAL E PN+A LDLVAL T+ADV PL NR+ G+ ++ Sbjct: 220 KLALAL----------CEVFAVSPNIAHRQLDLVALATIADVAPLRGENRVFVRYGL-KL 268 Query: 256 RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 A PG++AL+ + DA+ L A +GF L PRLNAAGR+ D +G+ LLL + EA Sbjct: 269 LAETTHPGLRALMRSSGLDAKPLTAGRVGFVLAPRLNAAGRIADARLGLQLLLAEREDEA 328 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 V+A EL+ LN+ R+E+++ + +A+ E RD + G + WH GV+GI+AS Sbjct: 329 NVIARELEELNRARQELDRTVLDDAMRQVES-PAMRDQV--GFVLSREGWHAGVIGIVAS 385 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 RI E RP + A DG KGSGRSI + L L+ ++GGH AAGL Sbjct: 386 RIVEHTARPAVLVA-VEDGVGKGSGRSISAFDLHAGLGACADLFQ----RYGGHRAAAGL 440 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 +++ + F +RF + L L E+ D +S + E+ +L+R P+G Sbjct: 441 TMDAAQLPAFAERFDAVARAQLSADDLVPELRVDLDVSIHAVGEELEKLVRHFEPFGIGN 500 Query: 496 PEPLF--DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLA 553 P P F DG R VG L++ V+ GG L+GI + + + + + +A Sbjct: 501 PSPTFRADGVRLAAPTRRVGTDGLRISVDTTGG--TLEGIGWGLAARMPRLDVSQAYDMA 558 Query: 554 YKLDINEFRGNRSLQIIIDNI 574 ++L+ +E+RG LQ+ + ++ Sbjct: 559 FRLERDEYRGVSRLQLKLTDV 579 >UniRef50_A5D3H7 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D3H7_PELTS Length = 946 Score = 300 bits (769), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 202/569 (35%), Positives = 315/569 (55%), Gaps = 43/569 (7%) Query: 21 ELPPLLRRLYASRGVRSAQELERSVKGMLPW----QQLSGVEKAVEILYNAFREGTRIIV 76 ++ P+ +L +RG+ + ++ + L + L ++ AV + A G +I++ Sbjct: 73 DISPVTAQLLINRGIYTVEQGRAFIGSELSRLHRPELLRDMDTAVARILQAVEAGEKILI 132 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+DADG T+TAL + R LG ++ DY +P R E+GYG+ E + +A +G L+VTV Sbjct: 133 YGDYDADGITATALLIKVFRRLG-ADADYYIPGRLEEGYGVHLEPLQKALQKGTGLVVTV 191 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D GIS+ A E AR+ G+ +I+TDHH P +P A A+INP DC++P K LAGVG+A Sbjct: 192 DCGISALAEAEWARANGLDLIITDHHEPPPEIPNACAVINPKRPDCSYPFKELAGVGLAL 251 Query: 197 YLMLAL--RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 L AL RT ++ W D LDL LGTVAD+VP+ NRIL G+ R Sbjct: 252 KLAQALLERTGAGEKAWLD-----------YLDLACLGTVADIVPVQGENRILVKHGLPR 300 Query: 255 IRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 + AG PG++AL+ V+ L+ ++G+AL PRLNAAGR+ +GV LL+ D++ E Sbjct: 301 L-AGTGSPGLQALMAVSGIKGDNLSPREVGYALAPRLNAAGRIGTPQMGVRLLMTDDLEE 359 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA------MYHPEWHQG 368 AR LA EL+ NQ R++IE + EAL+L E GLA + P WH G Sbjct: 360 ARHLAGELNRYNQVRQKIESKVFEEALSLLEA--------DPGLAEAPVPVLASPGWHAG 411 Query: 369 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGG 428 V+GI+ASR+ E+ +RPV+ + G+ +GS RSI G ++ AL +L++GG Sbjct: 412 VIGIVASRLAEKLYRPVLLISLEGE-LGRGSARSIPGFNVYKALSHCHE----YLLEYGG 466 Query: 429 HAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 HA+AAG +E + +++ ++ L + DG + +++ E+ ++ Sbjct: 467 HALAAGFKVEGGMVEDLRKKINGYARTAVEAEKLIPYLELDGIVEVGQVSEELVNEIKLL 526 Query: 489 GPWGQMFPEPLFDG-HFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALWPDN 545 P+G P+PL +L+ R++G+ HLK+ + G ++DGI FN+ Sbjct: 527 SPFGPSNPDPLLCCLEAFVLESRVIGKGSSHLKLRLR--GKNTVMDGIGFNLGAYAEVLA 584 Query: 546 GVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +V LA+ INE+ G RSLQ+ + ++ Sbjct: 585 TAEKVDLAFVPGINEYNGRRSLQLEVKDL 613 >UniRef50_B8FE66 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FE66_DESAA Length = 572 Score = 300 bits (769), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 204/553 (36%), Positives = 300/553 (54%), Gaps = 27/553 (4%) Query: 32 SRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGAT 86 +RG+R ER + L P+ L ++KA+ + +A + I+V GD+DADG Sbjct: 34 NRGIREPGAAERYLGPSLADLPSPFT-LKDMDKAIARIIHAIQARENILVFGDYDADGVC 92 Query: 87 STALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE-VVDQAHARGAQLIVTVDNGISSHAG 145 STAL + G + + + VP+R ++GYG S + + + ++ QL++TVDNGISSH Sbjct: 93 STALLTEFLLEAG-ARVFFHVPHRTQEGYGFSSQHIRNPVLSKKIQLVITVDNGISSHEA 151 Query: 146 VEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTF 205 +E A G+ VIVTDHH P +T P A A+I+P L C LAGVGVAFYL + LR Sbjct: 152 IEEAGQAGVDVIVTDHHTPSETPPPALAVIDPKLPGCPSGLDHLAGVGVAFYLCIGLRMA 211 Query: 206 LRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIK 265 +R+QG + E PNL DLVALGT+AD+VPL NRILT G+ I RPG+K Sbjct: 212 MREQGLWPEGK--EPNLKHKCDLVALGTIADMVPLIGENRILTRAGL-EIMGAAARPGVK 268 Query: 266 ALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDAL 325 ALL+V+ D ++A DL F PRLNA GR+D + V LLL + AR LA E+DAL Sbjct: 269 ALLDVSAVDNSTVSAHDLAFRAAPRLNAPGRVDHANKAVELLLEKSNSRARQLAWEIDAL 328 Query: 326 NQTRKEIEQGMQIEALTLCEKLERSRDTLPG--GLAMYHPEWHQGVVGILASRIKERFHR 383 N+ R+ + + + AL+L +S L G L M H WH GV+GI A+++ F+ Sbjct: 329 NRKRQRMSEDLYHSALSLL----KSDHDLKGKRSLVMAHSGWHPGVIGIAAAKLVREFNC 384 Query: 384 PVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFK 443 PV+ + T KGS RSI G+ + AL+ ++ ++ FGGHA AAGL++++ + Sbjct: 385 PVVLIS-MDKRTGKGSARSIPGVDLYQALQACES----QLIAFGGHAQAAGLTIDDKSIE 439 Query: 444 LFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DG 502 F+ F V E + + D ++P E+ + A + P+G PEP+F Sbjct: 440 TFRGMFDSQVLEKSTERDFERVLTIDYSVNPMEIGPDFANQIESMAPFGIANPEPVFIST 499 Query: 503 HFRLLQQRLVGERHLKVMVEP-VGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEF 561 + Q VG H +++ G L I FN L P +AY++ N + Sbjct: 500 EVGIKQGPTVGRGHRRMVFHSGEGNTKPLQAIWFNARDQLVPSIA---GAVAYRVQWNRW 556 Query: 562 RGNRSLQIIIDNI 574 + +++Q II+ I Sbjct: 557 KDRQTVQAIIEGI 569 >UniRef50_C9KKH1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Veillonellaceae RepID=C9KKH1_9FIRM Length = 668 Score = 300 bits (768), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 197/528 (37%), Positives = 295/528 (55%), Gaps = 30/528 (5%) Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV + A +G I V GD+D DG T+T+L +R G + +D+ +P+R +GYG Sbjct: 62 MDKAVARIQKALAQGEHITVYGDYDVDGMTATSLLTRTLRKFG-AKVDFYIPDRMTEGYG 120 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLG-IPVIVTDHHLPGDTLPAAEAII 175 L+ +++ A + L+VTVD GI+S A V + G + +I+TDHHLPG LP A A++ Sbjct: 121 LNRRALEEI-AEQSDLLVTVDCGIASVADVAAIQGAGKLDIIITDHHLPGSELPPACAVL 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP+ DC +P K LAGVGVAF L AL + W + + L+LVALGTVA Sbjct: 180 NPHRADCPYPDKDLAGVGVAFKLCQALAAARSGKLWDGQ-----SAFTDDLELVALGTVA 234 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL NR + QGM+R+ A PG+ AL+EVA +K+ A LGF L PRLNAAG Sbjct: 235 DIVPLRGENRRIVKQGMARMEATAL-PGVAALVEVAGLKDKKITAGHLGFLLAPRLNAAG 293 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL- 354 R++ GVALL ++ +A LA ELDALN R+EIE T+C+ E+ ++L Sbjct: 294 RIESARTGVALLTAEDRAQADKLALELDALNTERREIES-------TICQTAEQELESLD 346 Query: 355 ---PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 + + W+ GV+GI ASR+ ++F++P I + DG +GS RSI+GL+M +A Sbjct: 347 MAETKAIVVAGKGWNPGVIGIAASRLVDKFYKPTIVLSVQEDGICRGSCRSIEGLNMYEA 406 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L +L+FGGHAMAAGLSL E++ F+ F L + +V + Sbjct: 407 LSACKE----HLLQFGGHAMAAGLSLREEELPAFRAAFAAYAGAHLSEEDYEPKVSVEFE 462 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVG--ERHLKVMVEPVGGGP 528 + P E+T+++ + L P+G P+P F + R + +G + HL+ + P Sbjct: 463 MMPEELTLDLVEELSLLEPYGMGNPKPYFGCRNVRGREAMAIGREQNHLRFKL-GTEDAP 521 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + + D A + +V Y INE+ G RSLQ +++++ P Sbjct: 522 VTSLMWNRADLAAAVNRETLDV--VYAPAINEWNGRRSLQCMVEDLSP 567 >UniRef50_C0ZAP8 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAP8_BREBN Length = 782 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 206/569 (36%), Positives = 291/569 (51%), Gaps = 45/569 (7%) Query: 20 AELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLSGVEKAVEILYNAFREGTRI 74 +L PL+ +L RG+ ++Q+ ++ P+ L G+E++V + A + I Sbjct: 25 CQLTPLVSKLLVIRGIDTSQKARDFLQAGPELFHDPFL-LDGMEQSVHRIQQAIQRQEPI 83 Query: 75 IVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV 134 + GD+DADG +ST+L V +R LG DY +PNRF +GYGL + + H G +LI+ Sbjct: 84 CIYGDYDADGVSSTSLMVHLLRQLGAV-FDYYIPNRFTEGYGLHKDALAHLHQSGYKLII 142 Query: 135 TVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGV 194 TVD GIS+ V +A LG+ VIVTDHH P +P A A+INP C++P LAGVGV Sbjct: 143 TVDTGISAVEQVAYANQLGLDVIVTDHHEPPAVIPEAFAVINPKKPGCSYPFDMLAGVGV 202 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 AF + AL + P L L DL ALGT+AD+VPL NRIL G+ R Sbjct: 203 AFKVGHAL--------------LKEPPL-HLADLAALGTIADLVPLVDENRILARAGLKR 247 Query: 255 IRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 + + G++AL+ V +L+A +GFALGPRLNA+GRL+ V LL ++ E Sbjct: 248 LNHTR-NLGLQALIRVCGLADTELSAGHVGFALGPRLNASGRLETAESAVKLLTTSDMDE 306 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILA 374 A A LD LN+ R+EI M EA+ + +L L + W+ GVVGI+A Sbjct: 307 AEKCAQALDDLNRERQEIVAAMTEEAVQMVNELYPPDQN--NVLVLAKEGWNVGVVGIVA 364 Query: 375 SRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAA 433 SR+ E F+RP I GT KGS RSI G M + L P +GGH MAA Sbjct: 365 SRLVELFYRPTIVLGIDPEKGTAKGSARSIAGFDMYEGLTACKEWLP----HYGGHTMAA 420 Query: 434 GLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQ 493 G++L + L +Q+ EL EWL D +S E+++ A+ L P+G Sbjct: 421 GMTLPVENLDLLRQKLNELAGEWLSSEDFTPMTKVDVAMSMEEISLTAAEQLEQLAPYGM 480 Query: 494 MFPEPLFDGHFRLLQQ------RLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDN 545 P PL LL++ R +G + HLK + G LD I FN Sbjct: 481 GNPTPLV-----LLEEVETQGMRTIGRDDNHLKCTLNKAGTS--LDAIGFNWAHVTKRVT 533 Query: 546 GVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + +L +NE+ GNR Q+ I ++ Sbjct: 534 PKARFHVLGELSVNEWNGNRKPQLTIRDL 562 >UniRef50_A0L8H3 Exonuclease RecJ n=2 Tax=Proteobacteria RepID=A0L8H3_MAGSM Length = 592 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 194/532 (36%), Positives = 296/532 (55%), Gaps = 35/532 (6%) Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 AVE L A G +I V GD+D DGATS+AL + LG + + +PNR +GYG S Sbjct: 75 AVERLAEALERGEKIAVFGDYDVDGATSSALLMRYFHELGVA-LRVYIPNRLTEGYGPSV 133 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 + G L++TVD GI++ ++ A++LG+ VI+TDHH + LP A A+INPN Sbjct: 134 GAMRTLAEEGVSLVITVDCGITAFEPLQEAKALGLAVIITDHHQAREQLPEALAVINPNR 193 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 +D FP K LAGVGVAFYL++AL LR++GWF+ + P L LLDLVA+GTVADV Sbjct: 194 QDEPFPYKELAGVGVAFYLVMALNRLLRERGWFN-KGRQEPVLKPLLDLVAVGTVADVAG 252 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVA--NRDAQKLAASDLGFALGPRLNAAGRL 297 + NR L G+ + + + PG+ AL++V + ++L ++ +GF LGPRLNA GRL Sbjct: 253 MRGLNRALVTTGL-HVLSERSNPGLAALMQVVGIGEEVKELTSTHIGFQLGPRLNAGGRL 311 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 ++G LL C + +A +A LDA N+ R+EIE+ + +A+ E ++ L G Sbjct: 312 GQGALGYQLLSCHDQAQALPIAQTLDASNKERQEIERTLLKQAMDQVEA--ENQPILRRG 369 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRDALERLD 416 L + WH GV+GI+ASR+ +++ +P + A A G KGSGRSI G+++ A+E Sbjct: 370 LVVAGEGWHAGVIGIVASRLCDKYSKPALVIAIDAETGVGKGSGRSIPGINLLAAIE--- 426 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 + FGGH +AAGL+++ +K F + F + +T S + D L E Sbjct: 427 -AGAAHLEHFGGHKVAAGLTIQREKIPAFMEAFEDHLTRHYQASAFFPRLTVDAELPLDE 485 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKV---------MVEPVG- 525 + VA+ ++ P+G PEP+F L +++ ERHL + +E +G Sbjct: 486 LDFAVARQIQSFSPFGPGNPEPIFILPRVSLRGIKVLKERHLAMSIVCPRTHQQIEAIGF 545 Query: 526 ---GGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 GP++D I D A+W +A KL I +RG +++ + ++ Sbjct: 546 RMAPGPIVDAIQAG-DVAVW--------DVAGKLTIETWRGREKMKLQLSDV 588 >UniRef50_UPI0001789928 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789928 Length = 800 Score = 297 bits (761), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 197/564 (34%), Positives = 312/564 (55%), Gaps = 38/564 (6%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREGTRIIVV 77 LPP++ L ASRG++SA++ + G + G+ +AV + A + I++ Sbjct: 27 LPPIVASLMASRGIQSAEDGREFLYGTFELTHDPYLMQGMREAVPRIRKALEDREHILIY 86 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+DADG +ST+L + MR LG S D +P+R +GYGL +D AH +G L++TVD Sbjct: 87 GDYDADGVSSTSLMIHLMRYLGAS-YDIYIPHRSNEGYGLHNHALDWAHQQGVSLVITVD 145 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 GIS+ + +A SLGI VIVTDHH P + LP A A+INP + C +P K LAGVGVA+ Sbjct: 146 TGISAVEQIAYANSLGIDVIVTDHHEPPEVLPEAYALINPKIPTCPYPFKGLAGVGVAYK 205 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 L AL + P E L +V++GT+AD++PL NR+L G+ +R Sbjct: 206 LAQAL--------------VGDPP-EEWLQIVSIGTIADLMPLTGENRVLVKHGIESMRR 250 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 + GI++LLEV+ +++ A ++ F++ PR+NA+GRLD V LL ++ EA Sbjct: 251 TRYE-GIRSLLEVSGIHVEQVTAVNVAFSMAPRINASGRLDHAGRAVTLLTTEHREEAER 309 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 LA ELD LN+ R+++ + + EAL + + R ++ +P + + W+ GVVGI+AS+I Sbjct: 310 LAWELDGLNKDRQQVVENIVQEALGMVQNRWRGQE-IPPVIVLAGEGWNVGVVGIVASKI 368 Query: 378 KERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 ERF+RPV+ + G KGS RSI G + AL + M FGGH AAG+S Sbjct: 369 LERFYRPVVILGIDPETGNCKGSARSIPGFDIYAALLSCKDV----MDHFGGHPSAAGMS 424 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWG--QM 494 L D+ F+Q + L+ L +D S +E+++ + + + GP+G Sbjct: 425 LHRDRLAAFEQGLHRYAEDALEAEHLIAVCEADLEASLSEVSVPILEQMEQLGPFGMANA 484 Query: 495 FPEPLFDGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVD--TALWPDNGVREV 550 P+ +F + R +G+ +HLK+ ++ ++D I+F + P V V Sbjct: 485 VPKIVFRD-VVIKDVRKIGKEGKHLKLRLQ--QKREVIDAISFGWGHLADILPVGSV--V 539 Query: 551 QLAYKLDINEFRGNRSLQIIIDNI 574 + +L +NE+ G+R +Q++I +I Sbjct: 540 DVLGELSVNEWNGSRKVQLMIQDI 563 >UniRef50_A6NR30 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NR30_9BACE Length = 689 Score = 297 bits (760), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 207/565 (36%), Positives = 299/565 (52%), Gaps = 36/565 (6%) Query: 22 LPPLLRRLYASRG---VRSAQELERSVKGMLPWQQ--LSGVEKAVEILYNAFREGTRIIV 76 +PPL + +RG V A++ RS + +L W + +++AV + A + I V Sbjct: 24 VPPLAASVLCARGLDTVEKAKDFLRSDEDLL-WDPFLMKDMDRAVSRIAAALDQNEHIAV 82 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+D DG TST L +RS G Y +P+R E+GYGLS V HA+G LI+TV Sbjct: 83 YGDYDVDGITSTCLLTDYLRSRGAKVTPY-IPDRMEEGYGLSCSAVSALHAKGVSLIITV 141 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D GI++ A E A SLGI V++TDHH D +P A A+++P+ RDC +P K LAGVGVA Sbjct: 142 DCGITAVAEAEFAASLGIDVVITDHHECKDRIPTAAAVVDPHRRDCGYPFKHLAGVGVAL 201 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L+LAL G E + + A DL A+GTVADV+ + NR + G++ ++ Sbjct: 202 KLVLAL-------GDKTEESALLRRYA---DLAAVGTVADVMQVVGENRTIIRMGLAALK 251 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 RPG++ALL A + L + +G+ L PR+NA+GR+ + LLL + Sbjct: 252 -NTVRPGLRALLHEAGLTERPLTSVSIGYTLAPRINASGRMGCAGLAAELLLTSDPARGE 310 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 LA EL ALN+ R+ +E + E + + + + R D L + WHQGVVGI+ASR Sbjct: 311 ALARELCALNRERQAVELDIYEECVAMADAM-RPEDR--PALVLAREGWHQGVVGIVASR 367 Query: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 + E++ P DG KGS RS G ++ ALE+ L G FGGH +AAG + Sbjct: 368 LSEKYSCPTFMIC-LQDGKGKGSCRSFGGFNLFAALEQCRDLLEG----FGGHELAAGFT 422 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 + E+ F++R ELV + ++ + D PA +T E L P+G P Sbjct: 423 ILEEHIPAFRERMLELVRSSTGGAAMEAALEVDAEADPALLTQEGVLSLDLLEPYGTGNP 482 Query: 497 EPLF--DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA---LWPDNGVREVQ 551 +P+F G + G RHLK+ V GG D I F+V A L P + V Sbjct: 483 KPVFSMSGCTVTNASEVGGGRHLKLKV--TKGGRSFDAIFFSVSLAEAGLAPGD---RVD 537 Query: 552 LAYKLDINEFRGNRSLQIIIDNIWP 576 LA+ INEFRG RS+Q+ + ++ P Sbjct: 538 LAFSPQINEFRGWRSVQLQLIDLRP 562 >UniRef50_C8VZX5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZX5_DESAS Length = 907 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 200/585 (34%), Positives = 315/585 (53%), Gaps = 34/585 (5%) Query: 2 KQQI-QLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELERSVKGML-----PWQQ 53 KQ+I ++ ++ + + EL P+L +L +RG+ + ++++ ++ L P+ Sbjct: 3 KQKIWHIKENDLATQSIITKELGVSPILAQLMVNRGLGTVEQIKNFMEYDLSSLNNPYI- 61 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L ++KAV + A +I++ GD+D DG T TAL V A+R L +++Y +P+R ++ Sbjct: 62 LQDMQKAVNRIIEAVNRSEKILIYGDYDVDGITGTALLVGALRRL-TDHVNYYIPHRIKE 120 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVE-HARSLGIPVIVTDHHLPGDTLPAAE 172 GYGL E V++A +G LI+TVD GIS V+ ++ +I+TDHH P LPAA Sbjct: 121 GYGLHKEAVEKAAGQGYSLIITVDCGISGKEAVDWSVQNTKTDIIITDHHEPPPVLPAAL 180 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A+INP +DC +P K LAG+GVA L+ Q + N++ E LD+V LG Sbjct: 181 AVINPKRKDCEYPFKELAGIGVALKLV---------QAVYAAANMSSETWKEYLDIVCLG 231 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 292 T+ADVVPL NRIL G+ + + G+ AL++ + + + +GF L PRLN Sbjct: 232 TIADVVPLLGENRILVKYGLPYL-TKTSKKGLIALIKASGLRGD-ITSGQVGFVLAPRLN 289 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 AAGRL D + V LLL ++ +A +A LD N+ RK +E EA+ + E+ + Sbjct: 290 AAGRLGDPFMAVELLLTEDEAQANQIAVVLDEKNRKRKSVEDAALKEAIQMIEREISFKQ 349 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 + L + EWH GV+G++ASR+ ER+++PV+A A G+ KGS RSI G ++ AL Sbjct: 350 S--KVLVLASEEWHPGVIGLVASRLVERYYKPVLAIALDGEQG-KGSARSIPGFNLYQAL 406 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 E G +GGH MAAG SL+ + F + E + LL + DG Sbjct: 407 EHCGKNLSG----YGGHTMAAGFSLKRESLDNFIREINVYADEVISEDLLVPVMNLDGIF 462 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGE--RHLKVMVEPVGGGPL 529 S ++T +V + P+GQ P PL +++ + VG+ HLK+ + G Sbjct: 463 SLNDITEQVIAEIEKLAPFGQANPGPLLCCPEIQVVNFKGVGKEGEHLKIKIRKENG--F 520 Query: 530 LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +DGI FN+ + V LA+ +INE++G R + + I +I Sbjct: 521 IDGIGFNLASYSEMLATAERVNLAFVPEINEWQGKRHISLRIKDI 565 >UniRef50_Q2LTE9 Single-stranded DNA-specific exonuclease n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LTE9_SYNAS Length = 586 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 193/531 (36%), Positives = 287/531 (54%), Gaps = 46/531 (8%) Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 GV + ++ +Y +G +I+V GD+DADG TS A+ V +R + +++ Y +P+R ++GY Sbjct: 80 GVNRLIQAVY----QGEKIVVYGDYDADGITSVAVLVKFLRDIQ-ADVSYYIPDRIDEGY 134 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL+ + +D+ + A LI+TVD GIS + +ARSLG+ I+ DHH D+LP A A I Sbjct: 135 GLNRKAIDRIKEKSASLIITVDCGISDCDEILYARSLGLDTIILDHHEVSDSLPTAVASI 194 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP DC FP K LA VG+ F ++ALR LR +G++ + PNL E LDLVALGT+ Sbjct: 195 NPKRPDCPFPLKHLAAVGIVFNFLIALRGNLRKEGFWHGK--PYPNLKEYLDLVALGTIG 252 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+ P+ NRI G+ + GK R GI+AL E+ D Q + F+L PR+NAAG Sbjct: 253 DICPMVDENRIFVRVGLELLTEGK-RVGIRALKEICGVDTQAVDTEKASFSLIPRINAAG 311 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ V LLL D++G+AR LA +LD+ N+ R+ +E+ + E + EK R+ Sbjct: 312 RVGLPDDAVELLLADDMGKARDLAVKLDSYNRRRRALEKNILEEIIEDLEKTISDRNR-- 369 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 L M +WH GV+GI+AS+I +R+ RP I + DG KGSGRSI ++ L Sbjct: 370 TALVMASEKWHPGVIGIVASKIADRYDRPAILIS-LKDGIGKGSGRSIANFNIYQGLREC 428 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS----DGP 471 + ++ +GGH AAG+S+ E+ + F + E+V E ++LQ + +S + Sbjct: 429 E----DYLISYGGHRYAAGISIMEEDIEQFAETLDEIVRE----NVLQSDFISATFIEAQ 480 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGERHLKVMVEPVG----- 525 ++T E+ + P+G PEP L + +VG HL++ V G Sbjct: 481 CHLNDITHELLAQMELLAPFGSKNPEPVLCVRNVNAFSPAVVGNNHLRMRVSEAGVSRNT 540 Query: 526 ------------GGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGN 564 LD IAF W NG ++QL K DI RGN Sbjct: 541 IWFSQGHFIRELNDSCLD-IAFTPQINTW--NGASDIQLKMK-DIT-IRGN 586 >UniRef50_A8VTW9 Holliday junction DNA helicase RuvB n=2 Tax=Bacillus RepID=A8VTW9_9BACI Length = 785 Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 191/525 (36%), Positives = 284/525 (54%), Gaps = 30/525 (5%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L +++AV+ + A + RI++ GD+DADG TSTA++ L ++ LG + + Y +PNRF + Sbjct: 63 LYDMDRAVDRIRRAIEKQERILIFGDYDADGVTSTAITYLTLKRLG-AEVSYYIPNRFTE 121 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG + QA LI+TVD GIS E A+ G+ +I+TDHH P LP A A Sbjct: 122 GYGPNEGAFRQAAEESVSLIITVDTGISGVHEAEVAKECGMDLIITDHHEPPPVLPDAFA 181 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 ++NP C++P+ +LAG GVAF L AL IP +L DLVA+GT Sbjct: 182 VVNPKQEHCSYPNPNLAGAGVAFKLAHALTG-------------EIPE--DLFDLVAIGT 226 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +AD+V L+ NR L G+ IR G R G+KALL++A + +L +GF +GPRLNA Sbjct: 227 IADLVSLEGENRYLAKAGIEAIRQGP-RAGVKALLDIAGAEVSELNEETIGFMIGPRLNA 285 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGRLD ALL+ +N EA+ LA +D LN+ R+ I + + EA+ E Sbjct: 286 AGRLDSADPAAALLITENPHEAKDLAELIDGLNKERQSIVKEIAEEAIEQVEA-----QG 340 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG-TLKGSGRSIQGLHMRDAL 412 +P + + W+ GV+GI+ASR+ ER++RPVI + + KGS RSI+G M +L Sbjct: 341 VPSVIIVGAEGWNPGVIGIVASRLVERYYRPVIVLSFDQEKEQAKGSARSIEGFDMFQSL 400 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 + P FGGH MAAGL++ + ++R L E + ++ D P+ Sbjct: 401 STCRDILP----HFGGHPMAAGLTMSLSDVEELRERLIRLANESMSDDDWIRKLKVDLPV 456 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGER--HLKVMVEPVGGGPL 529 S E+T+ + L+ P+G P P + ++ R +G HLK+ V G G Sbjct: 457 SIEEVTLNAIEDLQAMAPYGIGNPAPKVMLEDVGIVSMRRIGATGDHLKLSVNNKGSGIE 516 Query: 530 LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 LD IAF A + + + L KL INE+ G R Q +++++ Sbjct: 517 LDAIAFGKGDAADEISKLSPLSLVGKLGINEWNGKRKPQFLVEDM 561 >UniRef50_B1HV84 Single-stranded-DNA-specific exonuclease recJ n=2 Tax=Bacillaceae RepID=B1HV84_LYSSC Length = 773 Score = 294 bits (752), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 200/586 (34%), Positives = 316/586 (53%), Gaps = 41/586 (6%) Query: 2 KQQIQLRRREVDETADLPA--ELPPLLRRLYASRGVRSAQELERSVKGMLPWQQ-----L 54 K++ Q+ R +V+ L +L + ++ A+RG + + E S+ M + Sbjct: 5 KKRWQVERPDVELVQALQNDLQLSAIAAKILAARGCETTADAE-SLLNMTEANVHDPFLM 63 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 G+ +AV + A G +I+V GD+DADG TST + + + LG +N+ + +PNRF G Sbjct: 64 HGMAEAVARIEQALDNGEKILVYGDYDADGVTSTTVMLNVLLDLG-ANVSFKIPNRFIHG 122 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + +A+ G QLI+TVDNGIS + A+ LG+ VIVTDHH PG+ LP A+ I Sbjct: 123 YGPHEALFREAYEEGVQLIITVDNGISGIEPIRVAKELGLDVIVTDHHEPGEELPPADII 182 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 ++P L + ++P LAGVGVAF L AL L L++ VA+GTV Sbjct: 183 LHPRLPEGHYPFGELAGVGVAFKLAHALYGELP---------------THLIEYVAIGTV 227 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+VPL NR L +G+ +R P ++A+ ++A+ + K++ +GF GPRLNA Sbjct: 228 ADLVPLVDENRYLVKRGIEEMRRS-LSPWVQAMCDIASTEQAKISEETIGFYFGPRLNAV 286 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRL + S GV LL+ ++ +A LA +L+A N RK+I + + EA+ L E ++ D+L Sbjct: 287 GRLGEASPGVELLMAEDSVKATALAKQLNASNTERKDIVKNITEEAIALIESEKKISDSL 346 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALE 413 L + W+ GVVGI+ASR+ E+++RP I + D GT KGS RSI G H+ + L Sbjct: 347 V--LVVAGEGWNAGVVGIVASRLVEQYYRPTIVLSLDPDKGTAKGSARSIDGFHLYNELA 404 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + + P FGGH MAAG++L + + R L L V D PLS Sbjct: 405 KNRDILP----HFGGHPMAAGMTLSIEHVDELRSRLDTQARACLTEEHLTPVVHIDIPLS 460 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLF---DGHFRLLQQRLVGERHLKVMVEPVGGGPLL 530 E++ + + + GP+G FP+P++ D +++ E H+K +E G L Sbjct: 461 LDEISADAIEEIASLGPFGTDFPKPVYVLEDVEISSMRKIGAAENHIK--MELTNGCDKL 518 Query: 531 DGIAFNVDTALWPDNGVREVQLAY--KLDINEFRGNRSLQIIIDNI 574 D + F+ D +++++ L INE++G + Q +I+++ Sbjct: 519 DSVGFH--KGHLHDELTYGIKVSFIGDLQINEWQGRKKAQFMIEDV 562 >UniRef50_C6XU81 Single-stranded-DNA-specific exonuclease RecJ n=7 Tax=Bacteroidetes RepID=C6XU81_PEDHD Length = 567 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 182/565 (32%), Positives = 304/565 (53%), Gaps = 45/565 (7%) Query: 26 LRRLYASRGVRSAQELERSVK---GML--PWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 L ++ RG+ S +E + + G L P+ + ++KA+E + A +I+V GD+ Sbjct: 29 LAQILVQRGISSFEEARQYFRPDMGRLHDPFL-MKDMDKAIERIDKAINSREKILVYGDY 87 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 D DG TS AL+ + S I Y +P+R ++GYG+S +D A+A G LI+ +D GI Sbjct: 88 DVDGTTSVALA-FSFFSQFTDQIGYYIPDRHKEGYGISTAGIDYANANGISLIIALDCGI 146 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 S + +A SL I I+ DHHLPG+ LPAA AI++P +DC +P K LAG G+ F L Sbjct: 147 KSTDKIAYANSLNIDFIICDHHLPGEVLPAAVAILDPKRKDCPYPFKELAGCGIGFKLA- 205 Query: 201 ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKC 260 Q + + + LDLV + AD+VP++ NRIL + G+ ++ + C Sbjct: 206 --------QAYCLQHRLPQEQYERYLDLVMVSIAADIVPIEDENRILAYHGLIKLNSNPC 257 Query: 261 RPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLC--DNIGEARVL 318 G+KAL++++ ++ + +D+ F L PR+NAAGR+D + V +LLC DN+ + + L Sbjct: 258 -IGLKALMDISGKN-KDYTLTDVVFTLAPRINAAGRMDHANQAVKMLLCTEDNLAQEQSL 315 Query: 319 ANELDALNQTRKEIEQGMQIEALTL---CEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 L N RK +Q M EAL L CE L + T+ +YH W++GV+GI+AS Sbjct: 316 LINLQ--NTERKTSDQNMTAEALALIAECEILINKKTTV-----VYHENWNKGVIGIVAS 368 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 R+ E+++RP + + +G L GS RS+ G + +AL + L +++FGGH AAGL Sbjct: 369 RLTEKYYRPTVVLTKS-NGLLTGSARSVAGFDLYEALLGCEDL----LVQFGGHKFAAGL 423 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 +++ + F +RF +V + LL E+ D + ++ + +++ P+G Sbjct: 424 TIKAEDIGFFTERFENIVAATITEDLLCPEISIDNEIRLRQIDGKFQRIIAQMAPFGPHN 483 Query: 496 PEPLFDGHFRLLQQR--LVGERHLKVMVEPVGGGPLLDGIAFNV----DTALWPDNGVRE 549 P+F H L + +VG +HLK+ ++ + + IAF + + L P+ + Sbjct: 484 MAPVFVSHEVFLASKPYVVGTKHLKLAIKQ-QNSSIFECIAFGMAEEYEQLLQPN---QP 539 Query: 550 VQLAYKLDINEFRGNRSLQIIIDNI 574 + Y ++ N ++ + LQ+ I I Sbjct: 540 FSVCYTIEENIWKAQKRLQLNIKEI 564 >UniRef50_C6D7X7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7X7_PAESJ Length = 677 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 201/568 (35%), Positives = 297/568 (52%), Gaps = 39/568 (6%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 +PPL+ +L RG + + E ++G + L G+ +AV + A G I + Sbjct: 30 IPPLVAKLLVQRGYKDKEAAETFLRGGEDRLHDPYLLIGMTEAVARIRQAADNGEFIRIY 89 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+DADG +ST+L + R LG + DY +P+R +GYGL+ +D A A G +LIVTVD Sbjct: 90 GDYDADGVSSTSLLIHVFRELGYT-FDYYIPHRASEGYGLNTGAIDIAAADGVRLIVTVD 148 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 GIS++ VE+A+SLGI ++VTDHH P + +P A A++NP DC +P K LAGVGVAF Sbjct: 149 TGISAYEQVEYAKSLGIDIVVTDHHEPPERIPDAVAVVNPKREDCPYPFKGLAGVGVAFK 208 Query: 198 LMLAL--RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 L AL R + E D+V+LGT+AD++PL NR+L G++R+ Sbjct: 209 LATALMGRAPM-----------------EWTDIVSLGTIADIMPLTDENRVLVRAGLARL 251 Query: 256 RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 + G +AL E + ++ ++ + F + PR+NAAGRLD V LL + EA Sbjct: 252 Q-NTDNTGFRALSEACGIELDQVTSTTVAFGMAPRINAAGRLDHAKRAVELLTTGDYDEA 310 Query: 316 RVLANELDALNQTRKEIEQGMQIEA-LTLCEKLERSRDT---LPGGLAMYHPEWHQGVVG 371 A+ LD LN+ R+ I G+ EA L K + +R P + + W+ GV+G Sbjct: 311 IRAASSLDVLNKERQRIVDGIVKEAELQWQGKRDAARAAGRPEPAVIVLAGEGWNVGVIG 370 Query: 372 ILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHA 430 I+AS+I ER+++PVI D G KGS RSI+G + AL D L + +GGH Sbjct: 371 IVASKILERYYKPVIVLGIDPDSGMCKGSARSIEGYDLHAALTECDEL----LDHYGGHQ 426 Query: 431 MAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGP 490 AAG+SL D+ F+++ GEL EWL + D S + ++ L P Sbjct: 427 AAAGMSLRRDQLPAFEEKLGELAMEWLTEQDWIPKTAIDLVCSVGDASVHTIGQLALLEP 486 Query: 491 WGQMFPEP-LFDGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGV 547 +G P P L L R +G+ RHLK+ + G LD + F + Sbjct: 487 FGAGNPSPRLLLQSAELSDYRTMGKDARHLKLSLR--SGRTSLDAVGFGLGELSNQLQSG 544 Query: 548 REVQLAYKLDINEFRGNRSLQIIIDNIW 575 V L +L INE+ G R Q+ I +++ Sbjct: 545 LPVDLVGELSINEWNGQRKAQLHIHDLY 572 >UniRef50_A4XHU1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Clostridia RepID=A4XHU1_CALS8 Length = 803 Score = 290 bits (743), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 191/559 (34%), Positives = 311/559 (55%), Gaps = 37/559 (6%) Query: 21 ELPPLLRRLYASRGVRSAQELER----SVKGMLPWQQLSGVEKAVEILYNAFREGTRIIV 76 ++ P + ++ +RG+ ++E+ ++K + L+ +++A+ I++NA R+++ Sbjct: 27 KIRPQIIKVLKNRGIVQKDDIEKFLAPAIKNLHNPFLLNDMKEAINIVHNAILHKKRVLI 86 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+D DG TST L ++ ++ Y +PNRF+DGYGL+ +++ + +++TV Sbjct: 87 YGDYDCDGVTSTYLLYSNLKKFLPTS--YYIPNRFKDGYGLNLDILKRLED-TFDILITV 143 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D GIS+ +E+ + G VIVTDHH P D LP A+AIINP RD +P + LAGVGVAF Sbjct: 144 DTGISAINEIEYLKQKGKIVIVTDHHEPKDKLPIADAIINPKRRDSTYPFRDLAGVGVAF 203 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L+ AL+ + I L++ LD+VA+GT+ADV+PL NRI G+ ++ Sbjct: 204 KLLHALKL----------SGLEIK-LSKYLDIVAIGTIADVMPLVDENRIFAKFGLKLLK 252 Query: 257 AGKCRPGIKALLEVANRDA-QKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 + G+K L+EVA + ++L D+ F +GPRLNAAGR+ D ++ ++LLL D++ EA Sbjct: 253 YTR-NIGLKKLIEVAGLSSKEELKPFDVSFIIGPRLNAAGRISDANLAMSLLLSDSLVEA 311 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE-WHQGVVGILA 374 +A LD N+ R+EIE+ EA + + ++D L + + + WH GVVGI + Sbjct: 312 EKIARRLDEENRKRQEIEEKTIKEAQKI---ITLNKDILRKKIFVLSSQSWHPGVVGIAS 368 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 S+I E+++RP + F +G LKGSGRSI+G ++ +AL+ ++LKFGGH AAG Sbjct: 369 SKITEKYYRPSLLFTFTDEGILKGSGRSIKGFNLFEALKNC----SDILLKFGGHEHAAG 424 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 LSL D F + + E+ + + V D LS E+ E+ + P+G Sbjct: 425 LSLVSDNFDKLDEILNAIAQEY-HFMIFKPAVEIDLVLSLNEIDDELIDQVYLLEPFGVG 483 Query: 495 FPEPLFDGHFRLLQQ-RLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDN---GVREV 550 PEP F +++ R +GE + K G G D + F + L ++ +++V Sbjct: 484 NPEPTFLIKNIIVENFRFMGEDN-KYYKFFTGNGTKYDVVCF---SNLEDEDELVTMKKV 539 Query: 551 QLAYKLDINEFRGNRSLQI 569 + KL+ N F R Q Sbjct: 540 DIVCKLEKNIFNSTRRNQF 558 >UniRef50_Q3A9Z7 Single-stranded DNA-specific exonuclease RecJ n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A9Z7_CARHZ Length = 854 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 197/566 (34%), Positives = 306/566 (54%), Gaps = 35/566 (6%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIV 76 + PL ++ +RG+ + + R G + P+ L +EKAV+++ + R + ++ Sbjct: 25 IEPLTAKMLVNRGIFHPRGVRRFFWGNIDDTYSPYL-LKDMEKAVKLILSG-RNTEKFLI 82 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+DADG TSTAL +R G N+D+ +PNR ++GYGL + +A G I++V Sbjct: 83 YGDYDADGLTSTALLYDFLRKRGF-NVDWYIPNRLDEGYGLHLPPLVKALEEGISFIISV 141 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D GI++ V+ R +G V++TDHH P + +P AEA+INP +DC +P K LAGVGVA Sbjct: 142 DCGITAVDEVKTVREMGAKVVITDHHEPQEEIPVAEAVINPKQKDCPYPFKGLAGVGVAL 201 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L+LAL L ++ E +I L + LDL +GT+AD+VPL NRI +G+ R+ Sbjct: 202 KLVLALGMALGER----EEDI----LDQYLDLFTVGTIADIVPLVDENRIFVIEGLKRL- 252 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 A RPG+KAL EVA + +++ D+GF L PRLNAAGRL D ++ LL+ +N A Sbjct: 253 AATGRPGLKALKEVAQLNREEITTRDVGFILSPRLNAAGRLKDPALAFELLIEENYERAL 312 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEK---LERSRDTLPGGLAMYHPEWHQGVVGIL 373 LA L NQ R+ IE + A+ E+ L+R + + GG WH GV+GI+ Sbjct: 313 ALAYRLSEENQNRQGIEAEIFKAAVETIEREVDLDREKILIIGGDG-----WHPGVIGIV 367 Query: 374 ASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAA 433 AS++ E+++RPVI + G+ KGSGRS+ G ++ +AL+ + + FGGH A Sbjct: 368 ASKLMEKYYRPVILISFDGEEG-KGSGRSVFGFNLFEALKAVK----DYLTHFGGHERAV 422 Query: 434 GLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQ 493 G+ + + +F F++ + L LL ++ + + ++ ++++ + P+G+ Sbjct: 423 GVGVLKSRFLEFKEALLAYAEKHLPDELLLPKIEVEEVVGENDLNLKISDEIALFAPFGE 482 Query: 494 MFPEPLF---DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREV 550 PEPLF G R Q HLK V+ + IAF+ L EV Sbjct: 483 QNPEPLFLIKGGQIRGAQAVGKNGNHLKFNVKL--NREIFSSIAFSKGDYLEFVYQQNEV 540 Query: 551 QLAYKLDINEFRGNRSLQIIIDNIWP 576 LA+ N F G LQ+ + I P Sbjct: 541 DLAFIPKPNRFNGKTELQLNVKEIAP 566 >UniRef50_C0QDK3 RecJ n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDK3_DESAH Length = 572 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 199/566 (35%), Positives = 303/566 (53%), Gaps = 42/566 (7%) Query: 25 LLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 ++ L A+RGV++ + L +++ + L +++AVE + A RI++ GDF Sbjct: 29 IVATLLANRGVKTPEAALAFLTPTMETLTSPFSLKDMDRAVERIILAIENNERILIFGDF 88 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 DADG T+TA+ + + I + +P+R ++GYGL E + A + LIVTVD G Sbjct: 89 DADGITATAVLNDFLTHVN-GEISWYIPHRSKEGYGLKVEHIAMATEQQIDLIVTVDCGS 147 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 S V+ AR I VIVTDHH D P A AI+NP + C+ LAGVGVAFYL++ Sbjct: 148 DSFEAVDLARLEDIDVIVTDHHEVPDPAPRALAIVNPKQKCCHSGLDHLAGVGVAFYLVI 207 Query: 201 ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKC 260 ALR +R +G + + PNL DLVALGT+AD+VPL A NR+LT G+ +R GK Sbjct: 208 ALRMEMRKRGMW--QRFTEPNLLASCDLVALGTIADMVPLTAENRVLTIAGIEVMRRGK- 264 Query: 261 RPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLAN 320 RPG+ AL +VA D + + D+ F + PR+NAAGR+ + + LL + A A+ Sbjct: 265 RPGLSALFDVARIDVALIDSDDIAFRIAPRINAAGRMAHARICIDLLCSRDPRGAEQKAD 324 Query: 321 ELDALNQTRKEIEQGMQIEALTLCEKLER--SRDT---LPGGLAMYHPEWHQGVVGILAS 375 LD LN+ R++ EQ ++ +ER SR L M+ WH GV+GI+AS Sbjct: 325 LLDQLNKKRQQTEQ-------SIVADIERRISRQNGAPCKDALVMWDSSWHPGVLGIVAS 377 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 +I ++ PV+ + A + GS RSI +++ AL + + +FGGHAMAAGL Sbjct: 378 KISRKYVCPVVLISTA-NSPATGSCRSINNINIHSALGQCSDF----LERFGGHAMAAGL 432 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGE-----VVSDGPLSPAEMTMEVAQLLRDAGP 490 +++E F F + S++ GE + D L +T E+ + + P Sbjct: 433 TIQEKNMAAFSHHFENTIR-----SIVHGEPRKRILELDCALEIDTVTKELIEAIDSLRP 487 Query: 491 WGQMFPEPLFDGH-FRLLQQRLVGERHLKVMV--EPVGGGPLLDGIAFNVDTA-LWPDNG 546 +G PEPLF ++ ++G RH K+ + + GP + + FN+D PD+ Sbjct: 488 FGMGNPEPLFYCKDIKVTHSTIIGMRHRKMELAKQTNASGPCISAVHFNIDDLDCLPDHF 547 Query: 547 VREVQLAYKLDINEFRGNRSLQIIID 572 Q+A+++ +N F G S QIII+ Sbjct: 548 ---EQIAFRIRMNRFNGRFSPQIIIE 570 >UniRef50_Q67LM2 Single-strand DNA-specific exonuclease n=1 Tax=Symbiobacterium thermophilum RepID=Q67LM2_SYMTH Length = 853 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 206/530 (38%), Positives = 300/530 (56%), Gaps = 35/530 (6%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L + +AV+++ R G I+V GD+DADG T+TA +LA+R+L + + Y +P+RF + Sbjct: 65 LKDMREAVDLIRARLRSGGPIMVYGDYDADGVTATATLLLALRAL-GAEVAYYIPDRFRE 123 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYGL+ + ARG IVTVD G+++ A + AR LGI ++VTDHH PG LP A Sbjct: 124 GYGLNAGALRSIRARGYDFIVTVDTGVAAVAEAQVARELGITLVVTDHHEPGPVLPDVPA 183 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 ++NP DC +P K LAGVGVAF L LAL PN +LLD+V LGT Sbjct: 184 LVNPRRPDCTYPFKGLAGVGVAFKLALAL---------------GAPNAWDLLDIVTLGT 228 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 VAD++PL NR + +G+SR+ A RPG++AL++VA + A +GFALGPR+NA Sbjct: 229 VADMMPLVDENRAIVREGLSRLGATH-RPGLRALMQVAGVQ-PPVTAGHVGFALGPRINA 286 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 GR+ GV LLL ++ A LA LD N+ R+EIE + EAL L Sbjct: 287 LGRMSSAEAGVELLLTEDPARAEELARRLDEENRARQEIEAAILEEALAQAAALPPEERE 346 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 L + WH GVVGI ASR+ E +HRP I + GD ++GS RSI G HM+ AL Sbjct: 347 Y--ALVLAGEGWHHGVVGICASRVLEVYHRPTILLSIEGD-EVRGSARSIPGFHMQRALL 403 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLE-EDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 ++ L+ +FGGHA AAGLSL D ++R L EWL P L E D + Sbjct: 404 QMSELF----TRFGGHAAAAGLSLRGRDLVPELRRRMNRLAAEWLRPEDLVPEQRVDAFV 459 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLF--DGHFRLLQQRLVGE--RHLKVMVEPVGGGP 528 + ++ + + L P+G P P+ DG +++ R +G +HLK+ + P G G Sbjct: 460 ALDQIDEGLIRELEALEPFGLGNPAPVLATDG-LQVVDGRAIGRNGQHLKLFLRPDGDGA 518 Query: 529 L--LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 ++ + +N+ A+ P+ G R + +AY+ +IN + G +Q+++ ++ P Sbjct: 519 AAPVEAVGWNMAVAM-PEPG-RRIAVAYEPEINTYMGRSRIQLVLKDMKP 566 >UniRef50_B0K968 Single-stranded-DNA-specific exonuclease RecJ n=11 Tax=Thermoanaerobacteraceae RepID=B0K968_THEP3 Length = 811 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 175/515 (33%), Positives = 290/515 (56%), Gaps = 30/515 (5%) Query: 11 EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFRE 70 EV +T LP + +L + V+S L +K + L G+++A +++ Sbjct: 20 EVQKTYGLPKIIADMLSARLNLQEVKSF--LNPDLKDLYSPYLLRGIKEAKDLIQQHIAS 77 Query: 71 GTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGA 130 I + GD+D DG T+T++ L ++ LG + +DY +P R +GYG++ E +D+ RG Sbjct: 78 KDLITIYGDYDVDGITATSILYLTLKKLG-AKVDYYIPERLVEGYGINEEAIDKIAQRGT 136 Query: 131 QLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLA 190 +LI++VD GI+S VE A+ LGI VI+TDHH +P A+ +INP+L D +P LA Sbjct: 137 KLIISVDCGITSVKEVEKAKFLGIDVIITDHHSIPKEIPQADVVINPHLPDSEYPFCDLA 196 Query: 191 GVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQ 250 GVGVAF L AL + ++ + ELLD+V++GT+AD+VPL NRI+ + Sbjct: 197 GVGVAFKLSQAL---IGEEAY------------ELLDIVSIGTIADIVPLLGENRIIVKE 241 Query: 251 GMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCD 310 G+ R+ + G+KA+++ + + ++ +GF L PRLNAAGRL V LL+ Sbjct: 242 GLKRLNETQ-NIGLKAIIKASGLENIEIDEYHVGFILAPRLNAAGRLRSAEAAVRLLISQ 300 Query: 311 NIGEARVLANELDALNQTRKEIEQGMQIEAL-TLCEKLERSRDTLPGGLAMYHPEWHQGV 369 + E +A L+ N R++IE + EA+ + E ++ +++ + + ++ WH GV Sbjct: 301 DEKEVEEIAEYLNQENLNRQQIENQILQEAIKKIKETVDLNKEKV---IVLWDKNWHPGV 357 Query: 370 VGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGH 429 +GI+ASRI ERFHRP I + G+G KGSGRSI+G ++ ALE ++K+GGH Sbjct: 358 IGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYC----KDYLIKYGGH 412 Query: 430 AMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAG 489 MAAG+++E++ ++F+ + E L L + D + ++ +E+A+ ++ Sbjct: 413 EMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAKVKNEKIDIEIAKQVQRFK 472 Query: 490 PWGQMFPEP--LFDGHFRLLQQRLVGERHLKVMVE 522 P+G P P LF+G L G ++ K++V+ Sbjct: 473 PFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIVQ 507 >UniRef50_Q2S0E3 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0E3_SALRD Length = 584 Score = 286 bits (732), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 189/520 (36%), Positives = 288/520 (55%), Gaps = 33/520 (6%) Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 L +A +GT ++V GD+D DG T TAL +R G ++ + +P+R+EDGYGL +D Sbjct: 74 LSDAIDDGTSVLVYGDYDVDGTTGTALFTDFLRDRGV-DVSFFIPDRYEDGYGLCRRGLD 132 Query: 124 QAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 A RGA L+V +D GI++H +A+ LG+ +I+ DHH P +TLP A A+++P D + Sbjct: 133 AAAERGASLVVALDCGITAHEEAAYAQELGLDLIIADHHTPKETLPEALAVLDPKRPDDD 192 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 +P + L G G+AF L+ Q R+ A E LDL+AL T +D+VPL Sbjct: 193 YPFEELPGCGLAFKLV---------QAVLAHRDEAPDAAYEYLDLLALSTASDIVPLYGE 243 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAAS-DLGFALGPRLNAAGRLDDMSV 302 NR+L +G+ ++ RPG++AL + A+ D Q + ++ ++ F LGPR+NAAGR++ S Sbjct: 244 NRVLMAEGLEALQR-STRPGVQALADAADLDLQTVTSTGNIVFTLGPRINAAGRMEHASS 302 Query: 303 GVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYH 362 V LLL + EA A EL+ LN+ R+ I+ ++ EA+ E+ SR P L +Y Sbjct: 303 AVELLLARSYEEAEPHAAELEQLNRERRRIDDTIEEEAVERAERQITSRS--PHALVLYD 360 Query: 363 PEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGM 422 P+WH GV+GI+AS I ERFH+P I G+ +KGS RSI+G+++ +AL + + Sbjct: 361 PDWHLGVIGIVASSIVERFHKPTILLTHNGEA-VKGSARSIEGINIYEALADCE----DV 415 Query: 423 MLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL---SPAEMTM 479 + +FGGH AAG+SLE D F+ RF + V E + P LL + D + + + Sbjct: 416 LTQFGGHDHAAGMSLEADDIDAFRDRFDDAVGERVTPELLTPSIKVDASVDLDTIGSVAD 475 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVG--ERHLKVMV--EPVGGGPLLDGIA 534 +L+ GP+G P P+F ++ R VG + HLK V G D I Sbjct: 476 RFWAVLKQFGPFGPANPTPVFHAEDLDVVSARTVGSDDSHLKFEVRQRDASSGQTYDAIG 535 Query: 535 FNVDTAL-----WPDNGVREVQLAYKLDINEFRGNRSLQI 569 F + L D G V+L + L+ N + G +LQ+ Sbjct: 536 FGMGEKLSVLRESQDTGT-PVELLFSLEENTWNGRTTLQL 574 >UniRef50_D2QL07 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Sphingobacteriales RepID=D2QL07_9SPHI Length = 584 Score = 285 bits (729), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 186/586 (31%), Positives = 309/586 (52%), Gaps = 46/586 (7%) Query: 9 RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEI 63 +R ET + P L L RGV++ +E + + P++ + ++KA+ Sbjct: 23 QRSAIETLTSSLGVSPFLAALLVQRGVQTYEEARTFFRPEINHLHNPFE-MKDMDKAIMR 81 Query: 64 LYNAF--REGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 L A +I++ GD+D DG TS AL ++S + IDY +P+R+++GYG+S + Sbjct: 82 LQMAMLPERQEKILIYGDYDVDGTTSVALVYGFLKSYHPA-IDYYIPDRYKEGYGISKQG 140 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 + A G LI+ +D GI S V A++LG+ I+ DHH PGD +P A A+++P D Sbjct: 141 IQWAAENGFSLIIALDCGIKSIDRVAEAKALGVDFIICDHHRPGDQIPDAAAVLDPKRDD 200 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 C +P K L+G GV F L+ Q + + I + L LDLVA+ +D+VPL Sbjct: 201 CAYPYKELSGCGVGFKLL---------QAFCLHKGIDLNELYPSLDLVAVSIASDIVPLT 251 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NR+L G+ + A R G+KAL+++A +++L ++L F LGPR+NAAGR+ Sbjct: 252 GENRVLAHYGLKHLNASP-RTGLKALIKIAGF-SRELDITNLVFGLGPRINAAGRIQHAK 309 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLC---EKLERSRDTLPGGL 358 V LLL ++ EA A ++ N +R+E + M +AL + E L +++ T+ Sbjct: 310 AAVQLLLAESEEEADEFAMAINKHNNSRREFDSSMTEQALEMIRGNESLLQAKSTV---- 365 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 ++ WH+GV+GI+ASR E FHRP I + D GS RS+ G + +A+E L Sbjct: 366 -LFDASWHKGVIGIVASRCIEHFHRPTIILTQSNDKA-AGSARSVPGFDVYEAIEECADL 423 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 + +FGGH AAG+++ D F+++F E+V + L + D PL +E++ Sbjct: 424 ----LEQFGGHTFAAGMTMSVDNIDAFRKKFEEVVASRIKEEHLTPLIDIDLPLDFSEIS 479 Query: 479 MEVAQLLRDAGPWGQMFPEPLF--DGHFRLLQQRLVGERHLKVMVE-----PVGGGPLLD 531 ++ +++R GP+G +P F + + + + ++ E+HLK+ V G Sbjct: 480 DKLYRIVRQMGPFGPHNLQPTFMTEDVYLVSEPIIMKEKHLKINVRQGDTTARRSGQTFT 539 Query: 532 GIAF---NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 I F ++ L P + + Y++D N F GN SLQ+++ +I Sbjct: 540 AIGFGMAHIADLLSPG---KPFSICYQVDQNHFNGNVSLQLMLKDI 582 >UniRef50_Q183I1 Putative single-stranded-DNA-specific exonuclease n=8 Tax=Clostridium RepID=Q183I1_CLOD6 Length = 816 Score = 285 bits (728), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 180/581 (30%), Positives = 309/581 (53%), Gaps = 33/581 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSG 56 +K + ++ E + ++ E+ +L+ +RG+ + ++ E + L + + + Sbjct: 6 LKYKGKIEESEFSKKLNISPEICQILK----NRGICTEKDSEIFMNPSLDYLRDPFLMKD 61 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV+ + A + +I + GD+D DG +ST++ L +S+G N+DY +PNR E+GYG Sbjct: 62 MQKAVDRIKLAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIG-YNVDYYIPNRLEEGYG 120 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 ++ + + +RG LI++VD GI+S + V A LGI VI+TDHH +P+A A+IN Sbjct: 121 INEDAIKLISSRGCDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQSEIPSAFAVIN 180 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P DCN+P SL G GVAF ++ AL +E ++ N L++V L T+ D Sbjct: 181 PKQEDCNYPFDSLCGCGVAFKMIQALTP-------KEEFKTSMYN---YLEIVTLATICD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +VPL NRI+ G+ ++ GK G++ L++V ++ K+ +S +GFA+GPR+NA+GR Sbjct: 231 IVPLIDENRIIVKNGLKSMKEGK-NIGLRELIKVCGVESDKIGSSHIGFAIGPRINASGR 289 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L +GV L + EA +A+ L+ N R+ IE M EA + + R D Sbjct: 290 LGYSYLGVELFTTQSQEEAVEIASILEEKNNERQMIEAKMYHEAEEMLKSNSRYND--DK 347 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 L + W G++GI+AS++ E++++P I +G GS RSI+G ++ +AL + Sbjct: 348 VLVLAKEGWQHGIIGIVASKLTEKYYKPTILLG-IENGEATGSARSIKGFNIFEALIKCK 406 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 L M KFGGH AAGLSL+ D ++ + L + V + L Sbjct: 407 DL----MTKFGGHEQAAGLSLDSDNVEILANEINKFADYNLTEDDMIENVNVEFELQENV 462 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ-RLVG--ERHLKVMVEPVGGGPLLDGI 533 + + + + L P+G P P F +L+ +++G ++HLK+ +E + I Sbjct: 463 INLNLVEELHKLEPFGLNNPNPRFIVRNYILKDLKVIGKNQQHLKLSIEKEKS---YECI 519 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 FN+ +V + ++LD N + GNR +Q ++ +I Sbjct: 520 GFNMSHLKSMYKVGDKVDVLFQLDENNYMGNRKVQFLLKDI 560 >UniRef50_D0MFV1 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFV1_RHOM4 Length = 587 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 202/568 (35%), Positives = 301/568 (52%), Gaps = 33/568 (5%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREGTRIIVV 77 LP L R+ +RG+ + + + L ++ +E A L A + +++V Sbjct: 27 LPEPLARVLVARGITTVEAARAFFRPELDQLHDPFLMADMEAAARRLARAIEDREQVLVY 86 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG T+TAL ++ G + Y VP+RF GYGL+ + +++A G +L++ +D Sbjct: 87 GDYDVDGTTATALVTSFLKERGVP-VRYFVPDRFRHGYGLTQKALEEALEAGTRLLIALD 145 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 GI++ +AR+ G+ +I+ DHH G TLP A A+++P DC +P L+G VAF Sbjct: 146 CGITAAEEAAYARARGVDLIICDHHTAGATLPEAVAVLDPKRPDCPYPFPELSGCAVAFK 205 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLA-ELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L+ A L + P A LDLVAL T AD+VPL NRIL +G+ +R Sbjct: 206 LVQATLQVLGES----------PEAAYRYLDLVALSTAADIVPLTGENRILMAEGLRHLR 255 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 RPG++ L A + L + F L PR+NAAGRL D + VALLL ++ A Sbjct: 256 RS-TRPGLQQLAARARWPLETLTMHGIVFGLAPRINAAGRLGDANRAVALLLAEDAATAD 314 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 LA ELDA N+ R++I++ EA+ E+ +RD L +YHP+WH GV+GI+ASR Sbjct: 315 KLAAELDAANRERQQIDRRTLEEAIVQAERQITARDDR-HALVLYHPDWHLGVIGIVASR 373 Query: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 I ERF+RP I A D LKGS RSI G+++ +AL + L +L+FGGH AAGL+ Sbjct: 374 IVERFYRPTILLC-AVDSILKGSARSIAGINIYEALRDCEDL----LLQFGGHTYAAGLA 428 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 LEE++ + F++RF E V + P LL + D L + +LL+ GP G Sbjct: 429 LEENRLEAFRERFNEAVGARMTPELLVPRLEIDALLDLHTLDERFWRLLQRFGPHGPENE 488 Query: 497 EPLFDGHFRLL--QQRLVG--ERHLKVMVEPVG--GGPLLDGIAFNVDTALWPDNGVRE- 549 EPLF + + +LVG +HLK V P + I F + L R Sbjct: 489 EPLFMARDLEVVGEPKLVGGEGKHLKFYVRQRAHPDDPPCEVIGFGKERLLPAVQHSRRM 548 Query: 550 ---VQLAYKLDINEFRGNRSLQIIIDNI 574 + LA+ L N ++G LQ+ + ++ Sbjct: 549 GQPLALAFTLQENTWQGQTRLQLRLRDL 576 >UniRef50_Q1NUV0 RecJ exonuclease n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NUV0_9DELT Length = 569 Score = 280 bits (717), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 191/524 (36%), Positives = 281/524 (53%), Gaps = 20/524 (3%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L G+ A +L + +G I++ D+DADG T+ AL L +R LG + YL+P+R D Sbjct: 59 LKGMAPASRLLADWLAKGAPIVIYADYDADGLTAGALLYLYLRRLGHRRLHYLIPHRVRD 118 Query: 114 GYGLSPEVVDQA--HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAA 171 GYGL P ++ A+ L++TVD GI+ V A LG VI+TDHH P LPAA Sbjct: 119 GYGLHPHLLASVPVAAQRQPLLITVDCGITDREAVAAATELGFKVIITDHHQPDGELPAA 178 Query: 172 EAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 A++NP+ C+FP +LAGVGVAFYL++ LR L +QG R +P L + LDLVAL Sbjct: 179 AAVLNPHQAGCSFPCPNLAGVGVAFYLLMGLRRRLVEQG--SHRAAELPRLKDFLDLVAL 236 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRL 291 GTVAD+V + NRIL G+ ++ G RPG AL VA A D+ F+L PRL Sbjct: 237 GTVADMVKVTGANRILIRAGLEVLQ-GNQRPGPAALAAVAGITPGY--AEDISFSLAPRL 293 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NAAGR+ + + LL+CD+ G+A LA ELD LN+ R+ + + + + + + + Sbjct: 294 NAAGRIGEPEIAFKLLICDDPGQAAALAGELDELNRQRRAMSDKIYQD---VRQTISSNI 350 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 L + H +WH GV+GI A+R+ + RP I A +G KGSGRS+ GL + A Sbjct: 351 ADLQNIILFAHEQWHPGVLGIAATRLALEYDRPAILCA-LTNGVAKGSGRSVAGLDLLAA 409 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFG-ELVTEWLDPSLLQGEVVSDG 470 + L G +GGHA A G+S+ ++ F++R +L++E +GEV D Sbjct: 410 VAGCRELLAG----YGGHAAALGVSMPKEVVAQFRERLNQQLISELPRARQERGEVDVDW 465 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLL 530 + M + P+G PEP F R+ + +VG +HL+ + Sbjct: 466 FFADGAMEPGFTAAYQRLAPFGPGNPEPQFRIRGRVGKATVVGSKHLRFSWQQADQS--Y 523 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + IAF AL +GV V+ + L N ++G S Q+ + + Sbjct: 524 NAIAFGRADALPLTSGV--VEFTFTLRRNFYQGRSSWQLKVSEL 565 >UniRef50_Q2RRN7 RecJ exonuclease n=3 Tax=Alphaproteobacteria RepID=Q2RRN7_RHORT Length = 606 Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 211/567 (37%), Positives = 316/567 (55%), Gaps = 25/567 (4%) Query: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 +P ++ R+ RGV+ + L +++ +LP L ++KAV L A R+ I + Sbjct: 51 VPEVVGRVLTGRGVQVEEADGFLTPTLRALLPDPGHLLDMDKAVARLSKAVRDKETIAIF 110 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DGATSTAL RSLG + + +P+R +GYG + ++ A+GA++++TVD Sbjct: 111 GDYDVDGATSTALMHRFFRSLGARVLIH-IPDRVLEGYGPNAPALEALAAKGARVVLTVD 169 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 GIS+ + A++ G+ V+V DHH LPAA A++NP D P LA VGVAF Sbjct: 170 CGISAFDALRAAKAAGLDVVVCDHHEARTELPAAVAVVNPKRLDEASPHTHLAAVGVAFL 229 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 + +A+ LRD GWF P+L LLDLVALGTV D+VPL NR L QG+ ++ A Sbjct: 230 MAVAINRDLRDSGWFAAEQRPPPDLMALLDLVALGTVCDMVPLIGVNRALVQQGL-KVIA 288 Query: 258 GKCRPGIKALLEVAN-RDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 + PGI AL EV+ RD ++ A LGF LGPR+NA GR+ +G ALL ++ E Sbjct: 289 KRTNPGIAALAEVSGVRD--RVDAFHLGFMLGPRVNAGGRVGQAGMGAALLSSEDPLECL 346 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERS-RDTLPGGLAMYHPEWHQGVVGILAS 375 A +LDA N RKEIE + +A+ E++E + + LP A +WH GVVGI+AS Sbjct: 347 DFARQLDAFNGARKEIEAAVLHQAI---EQVEAAPANDLPLVFA-SGTDWHPGVVGIVAS 402 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 R+KER+ P A A G G KGSGRS+ G+ + + + G++ GGHAMAAG Sbjct: 403 RLKERYGLPACAVALDG-GLAKGSGRSVGGVDLGRVV--IAAREAGVLEAGGGHAMAAGF 459 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 SL D+ + F+Q GE + + + L + DG L ++ + L AGP+G Sbjct: 460 SLRTDRLEEFRQFLGERLKDQVAALALVASLDLDGVLDVRGANAQLVRALSQAGPYGSGN 519 Query: 496 PEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN-----VDTALWPDNGVRE 549 PEP F + R+ + +VG H++ + GG L +AF + AL +G Sbjct: 520 PEPRFAVANARVGKVDVVGMGHVRCFLNGPSGGS-LKAMAFKAADSEIGHALLTAHGA-S 577 Query: 550 VQLAYKLDINEFRGNRSLQIIIDNIWP 576 + +A L ++ F+G ++ +++D++ P Sbjct: 578 LHVAGTLRLDSFQGRETVVLVVDDVAP 604 >UniRef50_B0P091 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B0P091_9CLOT Length = 576 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 187/573 (32%), Positives = 303/573 (52%), Gaps = 42/573 (7%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIV 76 + P++ RL +R V +++++ + G L P+ + GV++ VEIL +EG I + Sbjct: 23 IDPVIARLIRNRDVVGDEQIQQYLYGELSDISDPFL-MKGVKEGVEILKQKVQEGKTIRI 81 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 + D+D DG S + A+ LG ID+ +P+R +DGYG++ ++++A I+T Sbjct: 82 ISDYDVDGVVSNYILWKAIHDLG-GKIDFQIPDRMKDGYGINENIIEKAVEDQIDTILTC 140 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHH-LPGDT---------LPAAEAIINPNLRDCNFPS 186 DNGI++ V + + G+ +I+TDHH +P DT LP A+ +INP CN+P Sbjct: 141 DNGIAAADAVAYGKEHGLTMIITDHHDVPFDTDEAGMRKEVLPPADVVINPKQEACNYPY 200 Query: 187 KSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRI 246 L G GVAF M A + + DE L ELL ++A+ TV DVV L NRI Sbjct: 201 PLLCGAGVAFQFMRAFYQAMEE----DE-----SQLEELLSMLAIATVCDVVDLTGENRI 251 Query: 247 LTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVAL 306 +G+ RI+ + G+KALL V + +++ + LGF +GP +NA+GRL+ + L Sbjct: 252 FVKEGLRRIKDTQ-NIGLKALLNVHDLMDKQIQSYALGFIVGPCINASGRLESAEKALNL 310 Query: 307 LLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWH 366 L ++ +A+ A EL LN RK + + EAL + E D + L +Y PE H Sbjct: 311 FLEEDEEKAKQTAEELKELNDLRKTMTENGVKEALGQAFEYEAKGDKV---LVLYLPECH 367 Query: 367 QGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKF 426 + + GI+A RIK+R + P A +G +KGSGRSI+G M + + ++ ++ KF Sbjct: 368 ESIAGIIAGRIKDRLNHPAFVLTDAKEG-IKGSGRSIEGYSMFEEMMKVKEVFT----KF 422 Query: 427 GGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLR 486 GGH MAAG SLE++K + F+++ E T L+ +V D + +TM++ L Sbjct: 423 GGHPMAAGCSLEKEKLQEFRKKINENCT--LEKKDFAKKVQIDIDMPVDYITMDLIHQLS 480 Query: 487 DAGPWGQMFPEPLFDGHFRLLQQRLV---GERHLKVMVEPVGGGPLLDGIAFNVDTALWP 543 P+G+ +PLF H +L +R+ +++ + G +DG+ F + Sbjct: 481 VLEPFGKENKKPLF-AHRKLKVERVNVFGKNKNVIKLALKSSQGTRIDGMIFEDEDEFRE 539 Query: 544 DNGV-REVQLAYKLDINEFRGNRSLQIIIDNIW 575 G + + Y INE++G +SLQI I N + Sbjct: 540 KMGTSKYITCTYYPVINEYQGYKSLQINIQNYF 572 >UniRef50_Q11NW2 Single-strand DNA specific exonuclease n=13 Tax=Bacteroidetes RepID=Q11NW2_CYTH3 Length = 574 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 177/583 (30%), Positives = 305/583 (52%), Gaps = 40/583 (6%) Query: 6 QLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAV 61 Q + R + E ++ A + +L R + + +E + + L + +EKAV Sbjct: 16 QEKARSLAEALNINAYISAML----VQRNIETFEEAKNFFRPSLSQLHDPFLMRDMEKAV 71 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 L A RI++ GD+D DG TS ++ +++ +NI+Y +P+R+++GYG+S Sbjct: 72 TRLMQAIAGNERILIYGDYDVDGTTSVSVFYGFLKNY-YTNIEYYIPDRYKEGYGVSKAG 130 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 ++ A A LIV++D GI + V +A S GI I+ DHH PG+ LP A AI++P + Sbjct: 131 IEYARDTNATLIVSLDCGIRAVEMVAYANSFGIDFIICDHHNPGNELPDAVAILDPKQNN 190 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 C++P K L+G GV F L+ AL T G+ E L E +DL+A+ +D+VP+ Sbjct: 191 CSYPYKELSGCGVGFKLLQALCT---RAGYSSEL------LFEQIDLLAISICSDIVPIT 241 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NRILT+ G+ ++ RPGI+A+++V+ + + + + F +GPR+NAAGR+D Sbjct: 242 GENRILTYFGLQKLNESP-RPGIQAIVDVSGL-KKAIDVNTVVFTIGPRINAAGRIDHAF 299 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 V LLL +N +A A ++ N R+E ++ + EAL + + + +Y Sbjct: 300 AAVELLLAENKTDAANFAANINDHNLVRREFDETITGEALGMIQ--SNANAATASSTVLY 357 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 +WH+GV+GI+ASR E +HRP I + +G + GS RS+ + +A+++ L Sbjct: 358 KNDWHKGVIGIVASRCIEHYHRPTIILTQS-NGKVAGSARSVPDYDLYEAIDKCSDL--- 413 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 +++FGGH AAGL++EE + F+ +F E+V+ + L + D L ++ Sbjct: 414 -LIQFGGHKYAAGLTMEEKNIEAFRTKFEEVVSATIRKEQLIPMISIDLELPLNQIDSRF 472 Query: 482 AQLLRDAGPWGQMFPEPLF-------DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 ++R GP+G +P+F DG R+L+ ++HLK+ + I Sbjct: 473 FNIVRQMGPFGPQNMQPIFVSRNVMDDGTSRILK-----DKHLKLNIRQ-QDSVTYPAIG 526 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 + + + Y L+ NEF G +++Q++I +I I Sbjct: 527 WQMHAFYDRIKNKEPFDICYSLEENEFNGKKTIQLMIRDIQFI 569 >UniRef50_B2GBD3 Single-strand DNA-specific exonuclease n=21 Tax=cellular organisms RepID=B2GBD3_LACF3 Length = 765 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 205/588 (34%), Positives = 309/588 (52%), Gaps = 61/588 (10%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELER----SVKGMLPWQQLSGV 57 K+ IQ+ V + LPAEL LL ++G++SA +R + + L V Sbjct: 16 KETIQV----VADATGLPAELAALL----VNQGIKSADAAQRWLNPQAEDLHTPDALHDV 67 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 ++AVE + A G +I V GD+DADG T+T L A+ +LG + +DY VP+RF DGYG Sbjct: 68 DRAVERIMAAVEAGEKITVYGDYDADGITATTLMYEALETLG-AQVDYYVPDRFTDGYGP 126 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + V + G QLIVTVDNG++ A +E+A+ G+ V++TDHH + LP A AI++P Sbjct: 127 NQAVYQRLIEGGTQLIVTVDNGVAGLAAIEYAKEQGVDVVITDHHALPEQLPPAVAIVHP 186 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 +P L+GVGVAF + AL G F E+LDLVA+G +AD+ Sbjct: 187 QYPGSEYPFADLSGVGVAFEVAWALL------GEFP---------VEMLDLVAIGELADL 231 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 V L N L G+ ++R G RPG+ ALL++A L +D+GF L PRLNA GR+ Sbjct: 232 VSLAGENHALVALGLQQLRQG-SRPGLHALLKLAGVKEATLTGTDVGFQLAPRLNALGRI 290 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 + GV LL + EA LA E+D N+ RK++ + + EAL + + +P Sbjct: 291 EQAGPGVVLLSTFDEEEAERLAKEVDQTNEERKQLVEQITKEALAMA-----ANQQVPAL 345 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRP-VIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 + + H WHQGV+GI+A+ + + +P ++A A G+ KGSGRS+ GL + AL++ Sbjct: 346 VLVGH-GWHQGVLGIVAAHVVQATGKPTIVASANEGETIAKGSGRSVDGLDLFAALDQ-- 402 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP----- 471 + +M FGGHAMA G+S E Q E VT QG P Sbjct: 403 --HRDLMTAFGGHAMACGMSFELTAAAPLQAALNEEVTA-------QGFNQQQKPPLKIT 453 Query: 472 --LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFR-LLQQRLVG--ERHLKVMVEPVGG 526 L+P +T ++ ++ P+G EP + + + +++G + HLK+ V G Sbjct: 454 LTLAPDRLTQDLYTQIQRLAPFGPGNEEPQIELDVKGPVATQVMGKDKSHLKLKV----G 509 Query: 527 GPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 P LD +AF + EV+L L +NE+RG S Q+++ ++ Sbjct: 510 QPPLDVVAFGKASLAPALAEAEEVKLVGTLSLNEWRGKTSCQLMLTDV 557 >UniRef50_Q02C20 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02C20_SOLUE Length = 582 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 195/525 (37%), Positives = 272/525 (51%), Gaps = 28/525 (5%) Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 A+E + A R+ RI++ GD+D DG TS L + + L Y VP+R +DGYG+ P Sbjct: 75 AIERIARAIRDRERILIYGDYDVDGTTSVVL-LTKVIELAGGEARYHVPHRLKDGYGMRP 133 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 EVV+ A +G +LIV+VD GI + V A LGI VIVTDHHLP LP A A++NPN Sbjct: 134 EVVEAAAEQGVKLIVSVDTGIRAGEVVRRANELGIDVIVTDHHLPETELPPALAVLNPNR 193 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 DC + K+L G GVAF ++ AL L GW ++ + L L A+ TVADVVP Sbjct: 194 LDCGYMEKNLCGAGVAFKVIQAL---LPHIGWPADKVRRVSE--SFLKLAAIATVADVVP 248 Query: 240 LDANNRILTWQGMSRIRAGKCRP-GIKALLEVA--NRDAQKLAASDLGFALGPRLNAAGR 296 L NRI+ G+ + G R G++ALL+VA DA A + F + PR+NAAGR Sbjct: 249 LTGENRIIVACGLRGL--GTVRNVGLRALLDVAGFTPDATPPNARQVAFQIAPRMNAAGR 306 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 +D V L L + AR LA +L N R Q ++ E CE++ + D Sbjct: 307 MDTARAVVELFLTSDAERARELAKQLHEQNAER----QAVEAEIRETCEQI--AVDGAES 360 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRDALERL 415 L Y WH+GV+GI+ASR+ ER HRPV + DG +GSGRSI H+ +ALE + Sbjct: 361 ALVYYAENWHRGVLGIVASRLVERLHRPVFVLSRNPEDGLAQGSGRSIPAFHLLEALESM 420 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 P + LKFGGH AAG+++E + F++RF L + V D L Sbjct: 421 ----PELFLKFGGHKHAAGVTMEAARVVEFRERFNAFAATRLSAEDYRRRVEIDAVLELG 476 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 E+ + L P+G P P+F + + + E+HLK+ V G G L Sbjct: 477 EINEQTTGELFGLAPFGHGNPPPMFAVLNVEVASSVVWKEKHLKLNVRQNGRGLSLKAWN 536 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEF---RGNRSLQIIIDNIWP 576 F P G R V LA+ L+ + + RG + I+ ++ P Sbjct: 537 FAARVGELPP-GAR-VDLAFNLEEDAYSAARGYPAWAAILRDVKP 579 >UniRef50_A4SDH3 Single-stranded-DNA-specific exonuclease RecJ n=12 Tax=Chlorobiaceae RepID=A4SDH3_PROVI Length = 574 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 196/569 (34%), Positives = 299/569 (52%), Gaps = 35/569 (6%) Query: 16 ADLPAELPPLLRRLYASRGVRS---AQELERSVKGMLPWQQL-SGVEKAVEILYNAFREG 71 + A LP L R++ RGV+S A+ + LP L + + KAV + A R G Sbjct: 21 CSIKASLP--LARIFFMRGVKSYDAAEAFFTASLETLPSPSLFASMPKAVGRVQEAIRSG 78 Query: 72 TRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQ 131 +I++ GD+D DG T TA+ L +R +++ Y + NRFE+GYGLS E + A R Sbjct: 79 EKIMIYGDYDVDGITGTAMLNLFLRDRD-ADVSYYINNRFEEGYGLSMEGIRAAAERQVG 137 Query: 132 LIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAG 191 LI+TVD GIS++ +E A LG+ VIV DHH P + LP A AI+NP + C++P + L G Sbjct: 138 LIITVDCGISANLAIERAGELGMDVIVCDHHEP-EELPDAYAILNPKVPGCSYPFRELCG 196 Query: 192 VGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQG 251 GVAF + A+ +E ++ + + LDLVA+ T AD+V L NR + +G Sbjct: 197 CGVAFRFVQAIA---------EELQLSAESWQQYLDLVAIATAADMVVLSEENRTMVREG 247 Query: 252 MSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 R+ + R GI+A+L + + L + + F + PR+NAAGR+ V LL ++ Sbjct: 248 F-RMMQQRPRVGIEAMLSFMKVNPRDLGMTGVTFGIAPRINAAGRMGSARKAVDWLLAES 306 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL-ERSRDTLPGGLAMYHPEWHQGVV 370 EA EL+ LN R+ + +E L E++ E + + +Y WH GVV Sbjct: 307 KDEAHKHTGELEELNILRRRTD----LEMLKRAEEMVEGHFASYCSSIVLYDESWHLGVV 362 Query: 371 GILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHA 430 GI+AS++ ER+H P + A +KGS RS+ GL++ L+ L + +FGGH Sbjct: 363 GIVASKMLERYHLPTVILG-ASKELVKGSVRSVPGLNIYSVLQECSDL----LEQFGGHH 417 Query: 431 MAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGP 490 AAG+S+ + F++RF E+ LD Q E+ D L E+T + L+ P Sbjct: 418 QAAGVSMRPENLPAFRKRFDEISARVLDMDARQKELTVDTELGLGEITGNFMKALQRFSP 477 Query: 491 WGQMFPEPLF--DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF---NVDTALWPDN 545 +G PEPLF +G RL+ ERH+K MV G LD IAF ++ AL + Sbjct: 478 YGVGNPEPLFLTEGLQCTGSVRLLKERHVKFMVRD-ASGKRLDVIAFDRKDIYDALMESS 536 Query: 546 GVREVQLAYKLDINEFRGNRSLQIIIDNI 574 G + + Y L+++E+ G Q + ++ Sbjct: 537 G-QSFSMVYSLELHEWNGRVEPQAKVKDL 564 >UniRef50_UPI0001694BF0 YrvE n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694BF0 Length = 813 Score = 278 bits (711), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 190/563 (33%), Positives = 302/563 (53%), Gaps = 34/563 (6%) Query: 22 LPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 L L RL A RG+ + + E + G + ++KAV+ + A I + Sbjct: 27 LDTLTARLLALRGITTPEAAESFLHSRQDGFHDPFLMKDMKKAVDRIRLAVEHKEFIRIY 86 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+DADG TST+L + +R + + DY +P+R +GYGL+ + V++A G LI+TVD Sbjct: 87 GDYDADGVTSTSLVMFLLRKIK-ARFDYYIPHRVREGYGLNRQAVEKAAEDGVDLIITVD 145 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 G+S+ V + + LG+ VIVTDHH P D P A++NP DC +P K LAGVGVAF Sbjct: 146 TGVSAVEQVTYIQELGMDVIVTDHHEPPDISPQPLALVNPKQADCPYPFKHLAGVGVAFK 205 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 L AL D +P ELL+LVA+GTVAD++P NR + G+ R++ Sbjct: 206 LAHAL---------LDR----VPE--ELLELVAIGTVADLMPFHGENRTIVKMGLKRMQQ 250 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 PGI+ALL++A ++Q++ ++ LGFA+GPRLNA+GRL + V LL+ + G A Sbjct: 251 SAF-PGIRALLKIAGIESQQVTSTHLGFAVGPRLNASGRLGSANNSVELLITGDSGRANE 309 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 LA LD LNQ R+ I + + EAL + + + +T L + P+W++GV+GI+AS+I Sbjct: 310 LAQLLDELNQERQRIVREINEEALAIAAEQVQKGNTF---LVVAKPDWNEGVIGIVASKI 366 Query: 378 KERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 E ++RP I F+ + G KGS RSI+ M + L T ++ FGGH AAG++ Sbjct: 367 VETYYRPTIVFSMNDESGLAKGSARSIESFDMYENL----TACRELLEHFGGHRSAAGMT 422 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 ++++ ++ L P L + +D ++ + + L+ P+G P Sbjct: 423 IKQEHIDALHRQLDHQAKALLGPDDLVPVIRADAACHLKDVPLGWIEQLQKLEPFGASNP 482 Query: 497 EPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPD--NGVREVQ 551 P F + RL RL+G ++H+K+++ G + A A + + + Sbjct: 483 SPQFIVENLRLTDLRLLGRDKKHMKLVLSESQGESTVQIEALGFGKAHLSELISPTARLD 542 Query: 552 LAYKLDINEFRGNRSLQIIIDNI 574 + +L INE+ G R Q+ + ++ Sbjct: 543 VLGELGINEWNGIRRPQLTLKDL 565 >UniRef50_Q0AYS8 Single-stranded DNA-specific exonuclease-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AYS8_SYNWW Length = 932 Score = 278 bits (710), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 204/569 (35%), Positives = 297/569 (52%), Gaps = 55/569 (9%) Query: 25 LLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIVVGD 79 LL R+ RG+ +E R + G L P+Q L ++ AV + A G +I+V GD Sbjct: 26 LLARILVKRGISETEEANRFLYGKLEDLNDPFQ-LKDMDLAVARIEQAIAAGEKIVVYGD 84 Query: 80 FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139 +D DG S + + ++ LG +N Y VP+RF +GYGL+ + +++ + G QL++TVD G Sbjct: 85 YDVDGVCSIVILLECLQLLG-ANCSYYVPDRFLEGYGLNSDAIEKLASEGCQLLITVDCG 143 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199 ISS A + A LG+ +I+TDHH P D LP A AIINP L S LAG GVAF L Sbjct: 144 ISSLAEGQLACDLGMDLIITDHHRPLDKLPPAVAIINPKL-GGGAGSSDLAGAGVAFNLA 202 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 AL +Q L L+LVAL TVAD+VPL ++NRI+ G+ +I Sbjct: 203 AALWRGRMEQ----------EKLYNWLELVALATVADIVPLRSDNRIMVKYGLKKI-GQT 251 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 R G++ALL + + L + F LGPRLN+AGRL+ + LLL + A +A Sbjct: 252 SRKGLRALLRETALEGKNLRTWHIAFVLGPRLNSAGRLNSARNSIELLLAQDEKRAASMA 311 Query: 320 NELDALNQTRKEIEQGMQIEALTLCEK---LERSRDTLPGGLAMYHPEWHQGVVGILASR 376 L +N+ RK IE+ + EA+ E+ LE+ L GG +WH GV+GI+ASR Sbjct: 312 AFLCRVNEERKRIEETIFREAVAEIEQHIDLEKDPILLLGG-----EKWHDGVIGIVASR 366 Query: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 + E + RP I + GD +GS RSI G+ + AL+ G + +FGGH MAAGL Sbjct: 367 LNEHYRRPCILISWEGDCG-RGSARSIAGIDIFAALD----YASGFLQQFGGHKMAAGLR 421 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 LE F F+++ E SL E D + PA++ + + L P G+ P Sbjct: 422 LERRNFPAFKEKILEWAATQELSSLKPSERKIDAEIKPADINEALLKELELLQPCGEGNP 481 Query: 497 EPLFDGHFRLLQQRLV--------GERHLKVMVEPVGGGPLLDGIAFNVDTAL---WPDN 545 PLF LL+Q + G H K+ EP L+GIAFN + W ++ Sbjct: 482 VPLF-----LLRQVSINSAALIGKGREHFKIKTEP----DELEGIAFNQAQYMELPWRNS 532 Query: 546 GVREVQLAYKLDINEFRGNRSLQIIIDNI 574 L ++L NE++G + +Q+ + ++ Sbjct: 533 C---QDLLFELTENEYQGRKRIQLKVKDM 558 >UniRef50_B8FQU1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Desulfitobacterium hafniense RepID=B8FQU1_DESHD Length = 801 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 196/574 (34%), Positives = 299/574 (52%), Gaps = 33/574 (5%) Query: 13 DETADLPAEL--PPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILY 65 D + LP L P++ + RG+ + +E+ ++ L P+ + +A+E L Sbjct: 17 DSRSPLPQRLGITPVVADILRQRGIEAEEEIMEFLRPSLLNLNSPFA-FREMARAIERLE 75 Query: 66 NAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA 125 A + +I++ GD+D DG TSTAL + LG + Y +P+R ++GYGL + + +A Sbjct: 76 LARAQEEKILIYGDYDVDGVTSTALLYKVLTDLGFKAVAY-IPSRMDEGYGLHKDAITKA 134 Query: 126 HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFP 185 ++++TVD GI++ VE+ARS GI +I+TDHH P D+LP A AI+NP ++D +P Sbjct: 135 LQANVKVMITVDCGITAVEEVEYARSQGIDIILTDHHEPPDSLPQAYAILNPKVKDSGYP 194 Query: 186 SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNR 245 + LAGVGVAF L AL L +E + E+LDL ALGT+AD+VPL NR Sbjct: 195 FRDLAGVGVAFKLAQALLERL------EEGKSGAYAVLEILDLAALGTIADLVPLTHENR 248 Query: 246 ILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVA 305 I+ G+ ++ G++ LLE + L A + F + PR+NAAGR+D G+ Sbjct: 249 IIVAYGLRQME-NTIHLGLRTLLEECGLWGKPLKAGQIAFMVAPRINAAGRMDSARAGLE 307 Query: 306 LLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEW 365 LLL + A LA L N R++ E+ + EA+ + EK + +P + + W Sbjct: 308 LLLTGHEERAVELARFLSRENTLRQDTEKEIFAEAVEILEK-----NPMPRVIVLSGKNW 362 Query: 366 HQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLK 425 H GV+GI+ASR+ ER++RPV A + KGS R I G H+ D L+ L + K Sbjct: 363 HHGVIGIVASRLVERYYRPVFLIAEE-EEIGKGSARGIGGYHVLDELKAQAEL----LEK 417 Query: 426 FGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLL 485 FGGH+ AAG SL+ + L ++ + L + + D + + + L Sbjct: 418 FGGHSQAAGFSLKLETIPLLREALNQAALH-LPEEMFYERIRVDQCVPLEVLDASLLHDL 476 Query: 486 RDAGPWGQMFPEPLFDGH-FRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALW 542 P+G P P+ G + L VG+ HLK M P G +GIAF L Sbjct: 477 EHLAPFGFGNPSPVLAGRDYPLYMADTVGKDHAHLKCMFGPQGE---WEGIAFRKGEELA 533 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 G V +A+ LD N FRG +S+Q++I +I P Sbjct: 534 NILGSATVDVAFGLDWNTFRGAQSIQLMIKDIQP 567 >UniRef50_A8ZTX7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTX7_DESOH Length = 573 Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 197/584 (33%), Positives = 303/584 (51%), Gaps = 22/584 (3%) Query: 1 MKQQIQLRRREVDETADLPAELP--PLLRRLYASRGVRSAQE----LERSVKGMLPWQQL 54 M + I R+ + + LP + L +RG+ S ++ L +V + + Sbjct: 1 MTRNINTRQPDPSAVTAIAKALPCSDIAASLLVNRGILSVKQARHFLSATVADLPSPFSM 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 G++ AV +++A I+V GD+DADG T+TAL V + G + + + +P+R +G Sbjct: 61 KGIDTAVARIHSALINHETILVFGDYDADGITATALLVGFLTQAG-ATVRHHLPHRILEG 119 Query: 115 YGLSP-EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 YGL P + + A A L++TVD GI+SHA R GI +I+TDHH P A A Sbjct: 120 YGLKPRHITEVAATHKASLLITVDCGITSHAAALACREAGIDLIITDHHQAPAEPPTALA 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 +I+P C LAGVGVAFYL++ALR FLR++G++ R PNL DLVA+G Sbjct: 180 VIDPAQAGCPSGLGDLAGVGVAFYLLIALRAFLREKGFWKTR--PEPNLKACCDLVAIGA 237 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +AD+VPL NRIL G+ +R RPGI+AL+ A L+A D+ F L PRLNA Sbjct: 238 IADIVPLTGENRILVRTGLELLRT-PSRPGIEALIAGAKIKKPALSAEDVAFRLAPRLNA 296 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLC-EKLERSRD 352 GR+D + + LLL + A +A L+ LN R+ IE+ + E + +++ ++ Sbjct: 297 PGRIDHAATALELLLAETKEVAVKIAGRLNRLNTKRQMIEEEISGEIQQIVNDRINTIKE 356 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 L + H +WHQGV+GI ASR R+ PV +GD + GS RSI GLH+ DAL Sbjct: 357 RR--SLVLAHRQWHQGVIGIAASRAARRYSLPVALITISGDMGI-GSARSIPGLHLYDAL 413 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 + L+ FGGHA AAG + + F+ +F +V + P V D L Sbjct: 414 KGCARLFE----DFGGHAQAAGFRIRMENLAAFETQFEYIVRQQTTPGDFVPAVEVDCEL 469 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLD 531 + +T + + + P+G PEPLF + R ++ RH K+ + G + Sbjct: 470 AMDRITNTLVREIEGLSPFGAGNPEPLFSARNVRASDTFMINGRHRKMTLAHPGTDRGIA 529 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 I FN + + R ++ ++L + + G+ + QIII++ + Sbjct: 530 AIWFNTPASHQESSFFR--RILFRLRQDTWNGSGAPQIIIEDAF 571 >UniRef50_C5CED3 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CED3_KOSOT Length = 1047 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 173/484 (35%), Positives = 266/484 (54%), Gaps = 31/484 (6%) Query: 25 LLRRLYASRGVRSAQELERSVKGMLPWQQL-------SGVEKAVEILYNAFREGTRIIVV 77 L +L +RG+ E ++K + P + L ++KAV+ + A G I+V Sbjct: 27 FLAKLLVNRGITDVTE---ALKYLNPDRTLLHDPFLMKDMKKAVKTIIEAGERGDSIVVF 83 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG TSTAL LAM+ +G N+ Y +P R E+GYGLS +++ +++G +L++TVD Sbjct: 84 GDYDVDGVTSTALLYLAMKKMGF-NVSYYIPLRLEEGYGLSRAAIEELYSQGHRLLITVD 142 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 G++S +E A+ LG+ V+VTDHH D LP AEAI+NP D N+P K LAGVGVAF Sbjct: 143 CGVTSFDEIEFAKKLGLKVVVTDHHEVKDKLPLAEAIVNPKRPDDNYPFKGLAGVGVAFK 202 Query: 198 LMLALRTFLRDQGWFDERNIAIP-NLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L+ AL LR +P N + LD+VALGT+AD+VPL NR + +G +I+ Sbjct: 203 LLSALNETLR-----------MPLNPEDYLDIVALGTIADIVPLRDENRFIVREGTKKIQ 251 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 G+K LL + L A D+ F + P+LNAAGR+D V + LL+ ++ +A Sbjct: 252 KEPLL-GLKILLSYLRINPDNLTAQDIAFKIAPKLNAAGRMDSAVVALELLISEDKAQAM 310 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 A+ L NQ R+ IE + +A E +D + + WH GV+GI+ASR Sbjct: 311 RTASRLLQHNQNRQMIEAKIFEQATKEIESNVSMKDNFV--VVLSGENWHLGVLGIVASR 368 Query: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 + +++RPV + + DG KGS RS G+ + L + ++ ++GGH MAAG S Sbjct: 369 LVAQYNRPVFLISTS-DGEGKGSARSPSGISIISLLNKT----ADILDEYGGHEMAAGFS 423 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 ++++K F++R E + L ++ D L+ ++ E + + P+G P Sbjct: 424 IKKEKIPEFRKRLNEAYMDIYGEELPTYKIEVDDVLTLESISPETLKKIDMLRPFGHSNP 483 Query: 497 EPLF 500 EP F Sbjct: 484 EPKF 487 >UniRef50_A5UUU1 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Chloroflexaceae RepID=A5UUU1_ROSS1 Length = 572 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 192/564 (34%), Positives = 295/564 (52%), Gaps = 35/564 (6%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSGVEKAVEILYNAFREGTRIIVV 77 LPPL+ L RGVRS + P+ + G+E AV+ + A + + V Sbjct: 29 LPPLIAALLYQRGVRSDAAMREFFSADYRLNDPFS-MRGMETAVQRIAAAIHDHELMAVY 87 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG T+ L V A+ ++G + Y VP+R +GYGL+ E +D G +L++TVD Sbjct: 88 GDYDTDGVTAVTLLVQAISAMGGLILPY-VPHRIREGYGLNIEAIDALAREGVRLLITVD 146 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 GIS+ HAR++GI +I+TDHH P LP A AIINP C++P K L GVG+AF Sbjct: 147 CGISNVREAAHARAVGIDLIITDHHHPPARLPDAVAIINPRQPGCSYPFKHLVGVGIAFQ 206 Query: 198 LMLAL-RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L+ AL R R D +LLD+VALGTV D+ PL NR+L G+ + Sbjct: 207 LVRALARRGFRSTLQKD----------DLLDVVALGTVTDMGPLIGENRVLVTHGLKALN 256 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 A + RPG++AL++ A ++ ++D+ F LGPRLNA+GR+D+ + LLL + A+ Sbjct: 257 AAQ-RPGVRALIQAAGMTPGRVTSTDISFGLGPRLNASGRIDNARLSYELLLAEEFETAQ 315 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 LA+EL+ N+ R+E+ + + +A + L + L + + ++ GVVG++A+R Sbjct: 316 RLAHELNLQNRQRQELSKTVHEQASAQIQALGKQNQRL---IILDGTDYPAGVVGLVAAR 372 Query: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 + E + RP + G+ +GS RS+ G + DAL L+ +FGGH AAG + Sbjct: 373 LVEEYGRPTV-LIERGEQWSRGSARSVPGFSIIDALTDCADLFE----RFGGHTEAAGFT 427 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 + D+ + R E L LL + D + PA ++ E+ L P+G P Sbjct: 428 IATDRLPALEDRLLRYAAEHLSDDLLMPGITIDAEVPPASLSYELLGELAKLEPFGHGNP 487 Query: 497 EPLFDGHFRLLQ-----QRLVGERHLKV-MVEPVGGGPLLDGIAFNVDTALWPDNGVREV 550 +P+ R LQ R +HLK+ +V G GP D IAF R + Sbjct: 488 QPVLMS--RRLQVTGAWPRGSEGQHLKLRLVGADGSGP-FDAIAFRFGHLARYFEQPRWI 544 Query: 551 QLAYKLDINEFRGNRSLQIIIDNI 574 + Y L+ +E+ G+ SLQ+ + + Sbjct: 545 DIVYTLEADEWNGSPSLQLNVKDF 568 >UniRef50_D0RNX1 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNX1_9RICK Length = 580 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 184/566 (32%), Positives = 299/566 (52%), Gaps = 26/566 (4%) Query: 22 LPPLLRRLYASRGVRSAQ---ELERSVKGMLPW-QQLSGVEKAVEILYNAFREGTRIIVV 77 L L RL A+R + L +K LP + K +EI+ + +I + Sbjct: 30 LDFLTSRLLANRNINQKNIENFLNPKIKNFLPNPYNFKDMGKGLEIISRHIKNKNKICIF 89 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLV--PNRFEDGYGLSPEVVDQAHARGAQLIVT 135 GD+D DGATS+ + + L NID+ V P+R +DGYG S + + LI+ Sbjct: 90 GDYDVDGATSSGIMSKYLEQL---NIDHFVFIPDRQKDGYGPSVKTFTNIINKNVNLIIA 146 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVA 195 +D G +S +E+ARS I V+V DHH +T PAA AIINPN D L GV Sbjct: 147 LDCGTTSFEAIEYARSKNIDVVVIDHHKSQETFPAANAIINPNRIDETGDYYYLCAAGVL 206 Query: 196 FYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 F ++ L LR+ +F++ + PNL +LLDLV +GTV DVVPL NR QG+ ++ Sbjct: 207 FIFLVGLNKILRENYYFNKAKVQEPNLLDLLDLVMMGTVCDVVPLMDLNRAFVHQGL-KV 265 Query: 256 RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 + + G+K L++ + + +KL+ ++G+ LGP++NA GR+ +G LL +N A Sbjct: 266 ASKRHNLGLKTLVDYS-KIKKKLSTYEVGYVLGPKINAGGRIGKSELGYNLLTTNNAETA 324 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 ++++EL++LN RK+IE+ + EA+++ E R+ + + +WH+G++GI+AS Sbjct: 325 YLISSELESLNLKRKDIEKKIVEEAISISE-----RNNDEPIVFLSKNDWHEGLIGIVAS 379 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 R+K+ F++P + G+ KGS RSI G + A+ + L ++ K GGH MA G Sbjct: 380 RLKDHFNKPSFIISQKGEDC-KGSARSIFGFDVGMAITKCKQL--NIITKGGGHPMAGGF 436 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 SL+ DK ++F+ L + L + + D L + + E+ + L P+G Sbjct: 437 SLKSDKLEIFKNELINLFLK-LKKNKDNNIIEIDSYLESSAINDELIEKLNHLEPYGSGN 495 Query: 496 PEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV---DTALWPDNGVREVQ 551 EP+F F++ + H+KV++ G +D I+FN D + N +E Sbjct: 496 REPIFGFEKFKVSKVIETKNNHVKVVLNK--GNFYIDAISFNSKNKDLGNYLMNFKKEFN 553 Query: 552 LAYKLDINEFRGNRSLQIIIDNIWPI 577 L K+ +NE+ G +++IID+I I Sbjct: 554 LVAKIKLNEWNGKSKIELIIDDIQLI 579 >UniRef50_C8WZW9 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Desulfovibrionales RepID=C8WZW9_DESRD Length = 577 Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 199/560 (35%), Positives = 302/560 (53%), Gaps = 30/560 (5%) Query: 21 ELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIV 76 E+ P L L RG+ S QE L ++ + P SG+ +A +L A + T + Sbjct: 28 EISPFLCDLLWQRGLSSPQEMDVFLSPGLRHLAPPHTWSGLNEAAAVLAAALEQDTGPLA 87 Query: 77 V-GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVT 135 V GD+D DG T+TAL +R G + + +L PNR EDGYGL+ ++ + +G + ++T Sbjct: 88 VWGDYDVDGITATALVTEILRGRGYAVLPHL-PNRMEDGYGLNTAGIEALYDQGVRALLT 146 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVA 195 VD G+ + A+ LG+ V+V+DHH P TLP A+AI+NP + C P LAGVG A Sbjct: 147 VDCGMGDLEAITRAKELGMRVVVSDHHQPHATLPPADAIVNPCVDAC--PCPELAGVGTA 204 Query: 196 FYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 F+LM AL L +L LDLVALGT+ADVV L NRI+ G+ + Sbjct: 205 FFLMAALNRLLPG---------TPSDLRPSLDLVALGTIADVVSLRGQNRIVAKNGLLLL 255 Query: 256 RAGKCRPGIKALLEVANRDAQK-LAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 G RPGI AL E + + + A + F L PR+NAAGR+ + + LLL ++ Sbjct: 256 SEGS-RPGIYALKEASRLPGKAPIGAGQVAFGLAPRINAAGRMGSATEALDLLLAPDLAT 314 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILA 374 A+ LA +L+A NQ R+ E G+ +A+T E ER + GL + +WHQG++GI+A Sbjct: 315 AQPLAAKLEAANQERRTCEDGILEQAVTQVE--ERG---VTEGLVLADAQWHQGIIGIVA 369 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 SR+ ERF+RP I +G KGSGRSI + + AL L G FGGH AAG Sbjct: 370 SRVVERFYRPTILLT-RHNGYWKGSGRSIVDVDLHAALTECADLLAG----FGGHPQAAG 424 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 LSL E K F QRF + +++ L + + DG + ++ +++ + + P+G Sbjct: 425 LSLTEANLKPFTQRFSQAISKQLGGAEPLPRLKLDGHIPFGQIDLDLIREIELLQPFGMG 484 Query: 495 FPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLA 553 P+P+F ++ + + G++H+ + ++ G +L G A+ AL P VQLA Sbjct: 485 NPQPVFCSEPLQVQKHNVFGKKHVSLQLQDPKSGIVLTGKAWRQAEALTPSIQGETVQLA 544 Query: 554 YKLDINEFRGNRSLQIIIDN 573 + +N ++G S+ + I + Sbjct: 545 FTPRLNHYQGLTSIDLDIKD 564 >UniRef50_C8QX81 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX81_9DELT Length = 592 Score = 275 bits (702), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 193/535 (36%), Positives = 286/535 (53%), Gaps = 27/535 (5%) Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 G+ +AVE++ N+ I+V D+D DG ++ A+ + +L C ++ YL+P+R EDGY Sbjct: 69 GMSRAVELIANSMGSRQPIVVYADYDVDGLSAGAVLYKFLENLNCRDLYYLLPHRGEDGY 128 Query: 116 GLSPEVVDQAHAR----GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAA 171 G+ ++ + A+ L++TVD GI H + AR LG VIVTDHH P DTLP A Sbjct: 129 GVHAHLLAELRAKLGGNARPLLITVDCGIGDHQALIEARELGYTVIVTDHHRPEDTLPPA 188 Query: 172 EAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 AI+NP+ C FP K+LAGVGVAFYLM+ LR L QG+F ++ NL E +DLVAL Sbjct: 189 AAILNPHQAGCPFPCKNLAGVGVAFYLMMGLRRHLAGQGFFADQPPV--NLKEYMDLVAL 246 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVA--------NRDAQKLAASDL 283 GTVAD+V L NRIL G+ ++ + RPG+ AL A + + + D+ Sbjct: 247 GTVADMVALRGANRILVRAGLEVMQESR-RPGLVALAVAAGIKPPKGEGSEKRAIYPEDI 305 Query: 284 GFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTL 343 F+L PRLNAAGR+ LL+ DN EA+ LA EL+ LN+ R+++ + +A Sbjct: 306 SFSLAPRLNAAGRVATPETAFRLLITDNPAEAQALAAELEELNRWRRQLSDQVYRQAKER 365 Query: 344 CEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSI 403 E+ + + L + WH GV+GI A+R+++ F+RPVI F L+GSGRS Sbjct: 366 AAASEQQKMQV---LVLADENWHTGVLGIAATRLQQDFNRPVILFGYESPNILRGSGRSF 422 Query: 404 QGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQ 463 +GL D L +D ++L +GGHA A G++L+ + FQ + E + + Sbjct: 423 EGL---DLLAMVDACSE-LLLGYGGHAAALGVTLDPGRLAEFQAQLNEAAGRIMAERQPE 478 Query: 464 GEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVG--ERHLKVMV 521 + D + + + P+G PEPLF L Q +VG + HL+ Sbjct: 479 PTITVDWHFADGRIDAGLTTNYHLLEPFGPGNPEPLFQVKGPLAQAGVVGREQNHLRFRW 538 Query: 522 EPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + L GIAFN +L P N V+L + L N ++G + Q+ +I P Sbjct: 539 QQKDFN--LPGIAFNYGNSLKPSN-PGPVELIFALRRNIYQGRVAWQLQAKSIKP 590 >UniRef50_C6IZW2 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Bacillales RepID=C6IZW2_9BACL Length = 801 Score = 274 bits (700), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 193/561 (34%), Positives = 302/561 (53%), Gaps = 31/561 (5%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREGTRIIVV 77 + PLL L +R + S ++ E ++G L Q LSG+++AV + A G RI++ Sbjct: 27 ISPLLASLLVTREMESPEKAELFLRGSLADQHDPMLLSGMKEAVPRIRRAVENGERILIY 86 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+DADG +ST L + MR LG + DY +P+R ++GYGL V++ H +G LIVTVD Sbjct: 87 GDYDADGVSSTTLMIYLMRHLGAT-YDYYIPHRTKEGYGLHIPVLEHYHKKGFTLIVTVD 145 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 GIS+ V +A ++G+ VIVTDHH P LP A A+INP L C +P K LAGVGVA+ Sbjct: 146 TGISAVEQVAYANAVGMDVIVTDHHEPPAVLPEAYALINPKLPYCTYPFKGLAGVGVAYK 205 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 L AL W +L ALGT+AD++PL NR++ G++ + Sbjct: 206 LAQALLGEDTPIAW--------------TELAALGTIADLMPLTGENRMIVKSGLASMER 251 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 PG+ ALL + + ++ ++ + F L PR+NA+GR+ + VALL +N+ EA Sbjct: 252 -SAFPGMTALLGTSGWSSGEVTSTAVAFGLAPRINASGRMSHANRAVALLTAENMEEAEA 310 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 +A ELD LN+ R+ I + M EAL E E+S + LP + + W+ GVVGI+AS++ Sbjct: 311 IAEELDVLNKERQIIVEDMVQEALQQLESQEQS-EGLPDVIVVAGEGWNAGVVGIVASKL 369 Query: 378 KERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 ER++RP I + G KGS RSI G + +AL T ++ FGGH AAG+S Sbjct: 370 LERYYRPTIVLGIHPETGECKGSARSIPGFDIYEAL----TDCADLLDHFGGHPSAAGMS 425 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 L ++ + F +R L P + +D S ++T++ + L+ P+G Sbjct: 426 LSRERLEEFGRRLNAFAAGRLTPEHFVPVLETDLTCSLKDITLQAIEQLQQLAPFGMANT 485 Query: 497 EPLFDGHFRLLQQ-RLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLA 553 P L + R +G+ +HLK+++ G ++ +AF + + + Sbjct: 486 CPRLLLRGLKLLECRQMGKDGKHLKLILGQ--NGKTVEAVAFGKGELAPLLSEEARIDIV 543 Query: 554 YKLDINEFRGNRSLQIIIDNI 574 + +NE+ G+R Q++I ++ Sbjct: 544 AEASVNEWNGSRKPQLMIQDL 564 >UniRef50_C6X239 Single-stranded-DNA-specific exonuclease recJ n=2 Tax=Flavobacteriaceae RepID=C6X239_FLAB3 Length = 570 Score = 273 bits (699), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 161/533 (30%), Positives = 280/533 (52%), Gaps = 39/533 (7%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSL-GCSNIDYLVPNRFE 112 + ++ AV+ + A G +I+V GD+D DG T+ AL L + + ++Y +P+R Sbjct: 61 MKDMQIAVDRVATAIENGEKIMVYGDYDVDGTTAVALMYLYLSKIVDKKYLEYYIPDRNI 120 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 +GYG+S E +D A G LI+ +D GI + V++A+SL I I+ DHHLPGD +P A Sbjct: 121 EGYGISIEGIDHAKNNGFSLIIALDCGIKAIDKVDYAKSLAIDFIICDHHLPGDEIPDAV 180 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A+++P +DC +P K L+G GV F L L + + I L EL DL+A+ Sbjct: 181 AVLDPKRKDCRYPFKELSGCGVGFKLCQGLNSIYK---------IPEAELFELTDLLAIS 231 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAA---SDLGFALGP 289 AD+V + NR+L QG+ +R + G++ L+ +KLA S++ F + P Sbjct: 232 IAADIVSMTGENRVLAKQGLKVLRKSR-NLGLRMLIP-----EEKLATFEISNIVFEIAP 285 Query: 290 RLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLER 349 ++NAAGR+ V L++ DN+ +A + N++ LN +R+E++ EAL E+ ++ Sbjct: 286 KINAAGRISQGKAAVELMVSDNLKQAHQIVNDIITLNDSRREMDMSSTTEALLQVEETQQ 345 Query: 350 SRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMR 409 ++ +Y W++GV+GI+ASR+ E + +P + F +G + S RS+ + Sbjct: 346 VQNYTT---VVYGSGWNKGVIGIVASRLTETYFKPTLVFTDGNNGEMVASARSVADFDVH 402 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 DALE + LKFGGH AAGLS+E+DKF F+++F ++V+E + + ++ D Sbjct: 403 DALENCSEFF----LKFGGHPAAAGLSMEKDKFDKFREKFEKVVSEKIQQHQKEPSLLID 458 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVG--------ERHLKVMV 521 + P ++ + R P+G +P+ + Q++ G HLK + Sbjct: 459 SDVIPDDLNKDFFSFHRKLAPFGPHNMKPI----LAMKNQKISGYVKTMGKDNCHLKFYI 514 Query: 522 EPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + G ++ + F + D R +A+ + N ++GN + + I ++ Sbjct: 515 KQESTGRNIECVGFKL-GKFVEDFRNRPFDIAFTAEENHWKGNVTYYLNIRDV 566 >UniRef50_UPI00016BFB11 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFB11 Length = 679 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 168/521 (32%), Positives = 286/521 (54%), Gaps = 23/521 (4%) Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV + +A + +I + GD+DADG TST++ + + +G + ++Y +PNRF +GYG Sbjct: 54 MDKAVIRILDAISQKQQITIYGDYDADGITSTSVLYMFLTEVG-AKVNYYIPNRFTEGYG 112 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 ++ + + LIVTVDNGI++ A V+ ARS GI VI+TDHH D +P A I+N Sbjct: 113 MNIDAILYLADNKTDLIVTVDNGITAIAEVDFARSKGIDVIITDHHQCLDQIPDAHCIVN 172 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 +C +PS++LAGVG+ F L+ A+ T L+ +E + + LDLV++GT+AD Sbjct: 173 YKRPNCTYPSQNLAGVGIVFKLITAIATTLKLS--LEEY------VYKYLDLVSIGTIAD 224 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +VPL +R++ G+ I + PG++ALL + N+++Q + + + F + PR+NA R Sbjct: 225 MVPLLQESRVIASLGLKLITHTR-NPGLRALLNIINKNSQPITSYTIAFQVAPRINAISR 283 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCE-KLERSRDTLP 355 + D ++ + L + A LA LD N RK E + A + ++ S++ + Sbjct: 284 MSDANLAIELFTTQDTQRAATLAQLLDNNNIKRKAKEAEIVTAAFEYVKNNIDLSKEKV- 342 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 L + +WH GV+G++AS+I + ++RP I GD + GS RSI G + +A+ Sbjct: 343 --LVITGTDWHHGVLGLVASKISQHYYRPTIVCTLDGDKYV-GSARSIDGFSIINAI--- 396 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 T ++K+GGH AAGL++ K + F + + E LD LL ++ D + + Sbjct: 397 -TEQQQYLIKYGGHTQAAGLTISASKIRNFTEDINKANYEILDKQLLTPKIYIDATVPLS 455 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGER--HLKVMVEPVGGGPLLDGI 533 E+T+++ L P GQ P+ ++ + +G+R HLK+++E LD I Sbjct: 456 EVTIDLYNSLSALEPCGQNNSSPILLVKGKISKIIHMGKRSEHLKIILE--DNNKFLDVI 513 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 F+ N EV++A + NE+ G ++Q ++ I Sbjct: 514 IFSQGQLSNFLNKGEEVEIAGSISKNEWNGKTTIQFMMTAI 554 >UniRef50_A3DF49 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Clostridium thermocellum RepID=A3DF49_CLOTH Length = 827 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 196/573 (34%), Positives = 313/573 (54%), Gaps = 46/573 (8%) Query: 20 AELPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRI 74 A + LL ++ SRGV ++ + L P++ L +EKAV+ + A R+ +I Sbjct: 24 AGISKLLAGIFLSRGVDDPDYIKDFLNPSLDKLHDPFE-LRDMEKAVDRIVKALRQNEKI 82 Query: 75 IVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV 134 ++ GD+D DG TST++ R +++ Y +P+R +GYG+S ++ L++ Sbjct: 83 LIYGDYDVDGITSTSILYDFFRRQN-ADVCYYIPDRLNEGYGISMAAAEKMPEMDVDLVI 141 Query: 135 TVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGV 194 TVD GI++ V++ I +I+TDHH +++P A A++NP+ DC +P K LAGVGV Sbjct: 142 TVDCGITAFEEVKYITDNNIDIIITDHHECRESVPDALAVVNPHRFDCAYPFKELAGVGV 201 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 A+ L+ AL + G+ ER + LDLVALGTVADVVPL NRI+ G+ Sbjct: 202 AYKLLEALSKKMNIPGF--ER--------QYLDLVALGTVADVVPLLGENRIIVKYGLPM 251 Query: 255 IRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 I G+++L++VA + +++ +GF L PR+NAAGR+ D S V LL DN E Sbjct: 252 IEKTS-NVGLRSLIKVAGIENKEINTFLVGFVLAPRINAAGRIGDASRAVRLLTTDNEEE 310 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEK---LERSRDTLPGGLAMYHPEWHQGVVG 371 A +A ELD N RK+ E + EA+ + E L+R + + G WH GV+G Sbjct: 311 ALEIAKELDEQNIFRKQNELEIMEEAVNIIETGIDLQREKVIVVAG-----ERWHHGVIG 365 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMML-KFGGHA 430 I++S+I ER++RP + + G+G KGS RSI+G ++ +AL ++ G +L K+GGH Sbjct: 366 IVSSKITERYYRPSVLISVDGEGA-KGSARSIEGFNLFEAL-----VHCGKVLEKYGGHE 419 Query: 431 MAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGP 490 AAGL+L+ + F++ E LD L + D ++ +MT+E + L+ P Sbjct: 420 QAAGLALKPENIDEFRRMINEYADSVLDEDDLVPRMKIDVRITKEDMTLENCKELKLLEP 479 Query: 491 WGQMFPEPLFD-GHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFN----VDTALWP 543 +G+ P P+F + ++ + R VG+ RH K+ + G L+D I FN D Sbjct: 480 FGESNPPPVFRYDNLKVHEIRPVGQDSRHAKIRFD--DNGTLIDAICFNGGGLTDCYELS 537 Query: 544 DNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 D V + ++IN + G ++Q+ I +I P Sbjct: 538 DI----VDVVCSMEINLWNGRENVQLNIKDIRP 566 >UniRef50_A6BZD1 Single-strand DNA-specific exonuclease n=2 Tax=Planctomyces RepID=A6BZD1_9PLAN Length = 587 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 195/564 (34%), Positives = 292/564 (51%), Gaps = 32/564 (5%) Query: 22 LPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 + PLL ++ +RG++ A ++ + +L + GVE A + + A ++ RI + Sbjct: 24 ISPLLAQVLIARGLQDAAAARSFIDARMTELLEPGSMPGVETASDRIVAALKDKRRITIY 83 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQ-LIVTV 136 GD+D DG T+T++ +L +L DY +PNR +DGYGL+ + + Q H Q L++TV Sbjct: 84 GDYDVDGMTATSI-LLQCITLANGKCDYFIPNRLDDGYGLNCDAIRQLHEEDPQRLLITV 142 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D GI+S AR LG+ +I+TDHH D LPAA+ +++P L D ++ L G GVA Sbjct: 143 DCGITSVQEAALARELGLELIITDHHQMADELPAADCLVHPRLPDSDYEFPHLCGAGVAL 202 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLD----LVALGTVADVVPLDANNRILTWQGM 252 L A+ L D A P + E L L A+GT+ADVVPL NRIL G+ Sbjct: 203 KLAWAVCQKLGDG------QKASPQMREYLKCAVGLAAIGTIADVVPLVGENRILVRYGL 256 Query: 253 SRIRAGKCRPGIKALLEVANRDA-QKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 S + A + G++ L++VA A Q L D+GFA+ PRLNAAGRL + V LL N Sbjct: 257 SAL-AERAPLGLQELMKVAEIKAGQMLDTEDIGFAIAPRLNAAGRLGQARLAVELLTTSN 315 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVG 371 A LA LD LN+ R+ +E+ + +A + E E + L + H +WH GV+G Sbjct: 316 QDRASQLAAYLDELNKNRRTVERRIFKQAKEMVE--ENAEWEEHHTLVLAHADWHPGVIG 373 Query: 372 ILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHA 430 I+A+R+ E F +P + A A T +GS RS G + ++++GGH Sbjct: 374 IVANRVSEHFEKPTVLIALDATTRTGQGSARSFAGFDLHAGFSSCS----AHLVRYGGHQ 429 Query: 431 MAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGP 490 AAGL +EEDK + F+Q F E + PS + V D + E+T + + L GP Sbjct: 430 AAAGLKIEEDKIENFRQAFAEYAADAPKPSEDELLVRIDAEVCLNEITKQAVRELDCLGP 489 Query: 491 WGQMFPEPLFDGHFRLLQQ--RLVGE--RHLKVMVEPVGGGPLLDGIAFNV-DTALWPDN 545 +GQ P P F L + R +GE RHL ++ + + IAF + A D Sbjct: 490 FGQENPRPQFVATRVQLAEPPRTMGEGGRHLSLVFQQ--HNTKIRAIAFGKGEWATQMDE 547 Query: 546 GVREVQLAYKLDINEFRGNRSLQI 569 +++ IN FRG S+Q+ Sbjct: 548 DGGPFSISFAPGINRFRGFESVQL 571 >UniRef50_C4GBT7 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GBT7_9FIRM Length = 590 Score = 271 bits (694), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 195/583 (33%), Positives = 300/583 (51%), Gaps = 57/583 (9%) Query: 28 RLYASRGVRSAQE-----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDA 82 R+ +RGV A+E L S+ + L V++A ++L A G +I ++GD+D Sbjct: 28 RVMVNRGV--AEEDFDAYLHPSLDQIRNPHDLKDVDRAADLLSEAIDAGKKIRIIGDYDI 85 Query: 83 DGATSTALSVLAMRSLGC-SNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 DG ST +L L C +++DY++P R EDGYGL+ +V+ AH G LI+T DNGI+ Sbjct: 86 DGIQST--YILHQALLTCQADVDYVLPKRIEDGYGLNSHLVEDAHESGVSLIITCDNGIA 143 Query: 142 SHAGVEHARSLGIPVIVTDHH-LPG--------DTLPAAEAIINPNLRDCNFPSKSLAGV 192 + + A+ LG+ VIVTDHH +P D LP A+AI+NP DC +P K + G Sbjct: 144 AKEAIARAKDLGMMVIVTDHHEVPFAMADGKRLDRLPPADAIVNPKQADCPYPFKEICGA 203 Query: 193 GVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGM 252 VA+ L+ L +++R +++ + L+ A TV DV+PL NR + G+ Sbjct: 204 VVAWKLVFVL---------YEKRGVSVTLAMDFLENAAFATVGDVMPLVDENRTIVSLGL 254 Query: 253 SRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNI 312 R+R PG+ AL+ V D L+A +GF LGP LNAAGRL+ LL Sbjct: 255 ERLRK-TSNPGMAALMRVREIDPDHLSAYHIGFILGPCLNAAGRLETAEKSTRLLEEKEP 313 Query: 313 GEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGI 372 +A VLA +L ALN+TRK + +A T ++ + ++D + L +Y P+ H+ + G+ Sbjct: 314 EKAWVLAEDLAALNETRKAMTARGLEDAFTQIKEGDYAKDPV---LVIYLPKLHESIAGL 370 Query: 373 LASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 +A ++KE RP A +G +KGSGRSI M + + R L M++FGGH M Sbjct: 371 VAGKVKESLWRPCFILTDASAEGLVKGSGRSIPPYSMFEEMNRCKDL----MVQFGGHPM 426 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 AAGLSL DK ++ T L L ++ D P+ +T+ + + L+ P+ Sbjct: 427 AAGLSLRRDKIDSLRRALNANCT--LTEDDLLPKIHIDVPMPLHYITISLVEELKRLEPF 484 Query: 492 GQMFPEPLFDGHFRLLQQ-RLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL--------- 541 G P+PLF L++ R +G + G ++G+ F A Sbjct: 485 GNGNPKPLFAVRNVLVRSLRTMGREGQFLKFSLREGSSEVEGVYFGDARAFATAVEEAYG 544 Query: 542 ---WPD--NGVRE---VQLAYKLDINEFRGNRSLQIIIDNIWP 576 W + +G R V++ Y+ IN +RG +SLQ++I I P Sbjct: 545 QGSWEEFCHGFRRDLAVRMVYEPQINSYRGRKSLQLVIREIEP 587 >UniRef50_Q8EPR4 Single-strand DNA-specific exonuclease n=1 Tax=Oceanobacillus iheyensis RepID=Q8EPR4_OCEIH Length = 771 Score = 271 bits (693), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 178/561 (31%), Positives = 298/561 (53%), Gaps = 40/561 (7%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIV 76 L PLL++L+ RG+ + +E++R + + P+ L +EKAV+ ++ A + +I+V Sbjct: 26 LSPLLKQLFIQRGITTNEEVQRFLSPQIDDLHHPFL-LKDMEKAVQRIHKAIQNEEKILV 84 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+DADG +STA+ + A+ LG + D+ +PNRF +GYG + A +G ++I+TV Sbjct: 85 FGDYDADGVSSTAVMLKALTELGAT-CDFYIPNRFTEGYGPNEAAFRNASEQGYKVIITV 143 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN--FPSKSLAGVGV 194 D GI+S A LG+ +I+TDHH P +P + AII+P C+ +P LAGVGV Sbjct: 144 DTGITSVHEANIANELGMDLIITDHHEPQTNIPESFAIIHPK---CSPEYPFNELAGVGV 200 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 AF AL G+F ++ L A+GT+AD+VPL NR+L G+ Sbjct: 201 AFKFAEALL------GYFP---------SQFLSYTAIGTIADLVPLFDENRVLASYGLKE 245 Query: 255 IRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 +RA G+KAL++V + L +GF++GPRLNA GRL D + V LLL +++ Sbjct: 246 LRA-TTDVGLKALIQVCQ--IEDLDEQSIGFSIGPRLNAVGRLQDADLAVELLLTEDMEA 302 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILA 374 A +ANE++ +N RK++ Q + EA + R + A W+QGV+GI+A Sbjct: 303 ALEIANEINKINDERKKVVQRIVSEADQIVNSKPERRIIVVSNEA-----WNQGVLGIVA 357 Query: 375 SRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAA 433 S + ++ RP I + +G +KGS RSI + + R+ L+ FGGH+ AA Sbjct: 358 SHLVRKYDRPAIVLSTQPENGVVKGSARSIPAFDLFEGCMRMRDLFT----HFGGHSQAA 413 Query: 434 GLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQ 493 G++L + + + +++ L L+ E+ G L+ + +E+ + + P+G Sbjct: 414 GMTLPIENVDKLELQLDDILNNELAEEDLKQELEISGQLNMENINIELIKDISKLAPFGM 473 Query: 494 MFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLA 553 P+P+F + +G + + ++ +D I F A +Q+A Sbjct: 474 KNPKPVFQIKEIPSDIKRIGSKKNHLKMQFRKNSTRMDAIGFGWGDAYNQIAPHTPIQIA 533 Query: 554 YKLDINEFRGNRSLQIIIDNI 574 +L INE+ GN++ Q++I ++ Sbjct: 534 GELSINEWNGNQTAQLMIQDM 554 >UniRef50_A8YVP8 Single-stranded-DNA-specific exonuclease n=6 Tax=Lactobacillus RepID=A8YVP8_LACH4 Length = 757 Score = 271 bits (692), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 180/577 (31%), Positives = 301/577 (52%), Gaps = 69/577 (11%) Query: 21 ELPPLLRRLYASRGVRSAQELE----RSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIV 76 +L P+ RL+A RG+ + ++L+ + + + + ++KAV+ + A G +I + Sbjct: 20 QLSPISARLFALRGINTDEKLDFWFNATEENLTDPSLMHDMDKAVDRINQAIDNGEKITI 79 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+DADG T+T + A+ LG +++ Y +P+RF+DGYG + + A G +LI+TV Sbjct: 80 YGDYDADGITATTIMTEALSILG-ADVHYFIPDRFKDGYGPNLDRYKDIVADGTKLIITV 138 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 DNG++ VE+A+ G+ I+TDHH + P A AI++ N +P G GVA+ Sbjct: 139 DNGVTGIEEVEYAKEHGVDTIITDHHTFQENKPDAYAIVHCNYPGQEYPFDDYCGAGVAY 198 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 + R ++D +P ELLDL +GT+ D+V + I+ +G+ + Sbjct: 199 TI---CRELMQD---------PVP---ELLDLAMIGTIGDMVKVTGEGHIIVKRGLDVLN 243 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 + RPG++AL++ A + + +D+GF + PRLNA GRL + ++ V LLL D+ EA+ Sbjct: 244 QTE-RPGLRALIKNAGLTLETINETDVGFNIAPRLNAVGRLANANLAVELLLSDDDLEAQ 302 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD-TLPGGLAMYHPEWHQGVVGILAS 375 +A++++ LN RKE + E C +L R L +Y P++H+GV+G++A+ Sbjct: 303 KIADQIEDLNNKRKE----LTTEVYDRCMELVRENSWQKQNTLVLYDPDFHEGVLGLVAN 358 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 +I E+ H+P I +G +KGSGRS G ++ DA L+ L ++ KFGGH A GL Sbjct: 359 KIVEKLHKPTIVLTKNDEGEIKGSGRSFSGFNLFDA---LNPLKESLLTKFGGHDFACGL 415 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME----------VAQLL 485 S+EEDK +++F + + DG L E ME +AQ + Sbjct: 416 SMEEDKVNDLRKKF-------------EADFHVDGGLETKEYDMELPMHDLSPQTLAQ-I 461 Query: 486 RDAGPWGQMFPEPLFD------GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT 539 GP+G P+P+F HF + + + H+K+ G L + FN D Sbjct: 462 NQVGPFGTGDPQPIFSISDPTITHFFKIGK---DKNHVKLTANKKDGN--LAIVGFNKD- 515 Query: 540 ALWPDNGVREV--QLAYKLDINEFRGNRSLQIIIDNI 574 + +N + ++ L +N +R SLQ I++ I Sbjct: 516 --YLNNNLLPFISKIFVTLSLNTYRKQVSLQGIMEGI 550 >UniRef50_A1HMM2 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMM2_9FIRM Length = 570 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 193/571 (33%), Positives = 299/571 (52%), Gaps = 51/571 (8%) Query: 22 LPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 + PL+ ++ +RG+ S + L V+ + L G+ A+E + A +I++ Sbjct: 27 ITPLVAQILINRGINSVEAADAFLNAGVERLHDPFALKGMAAAIERIRQALHSKEKIVIY 86 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG T++AL + LG + + Y VP+RF +GYGL+ + GA LI+TVD Sbjct: 87 GDYDVDGITASALLYRVLSQLGAA-VAYYVPDRFSEGYGLNITALQNLCRAGADLIITVD 145 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 GI++ V R +I+TDHH PG +PAA A+INP DC +P K+LAGVGVAF Sbjct: 146 CGITAVNEVAAIRGEA-DIIITDHHEPGAAVPAALAVINPKQPDCPYPEKALAGVGVAFK 204 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 L AL W D + L + LDLVA+GTVAD+VPL NRI+ +G++R+ A Sbjct: 205 LCQAL--------WQDAGR-PVDELYKYLDLVAVGTVADLVPLVGENRIIVREGLNRLPA 255 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 + G++AL+ V ++ + F L PRLNAAGR+ V +L+ D+ A Sbjct: 256 TE-NAGLRALVAVCGFTDGRMDTGRIAFGLAPRLNAAGRVSHALSAVEMLITDDALFAGE 314 Query: 318 LANELDALNQTRKEIEQGM--QIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 +A ELDA N R+ IE + Q+E + LE ++ L + +WH GV+GI+AS Sbjct: 315 VAKELDAANAERRRIEDAIRVQVEEMLAGTDLEANKV-----LVVAAEDWHHGVIGIVAS 369 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 RI E+F+RP + + +G +GS RSI+G ++ +AL R L +L+FGGH+ AAG Sbjct: 370 RIVEKFYRPTLIIS-IENGVGRGSARSIRGFNIFEALCRSSDL----LLRFGGHSAAAGF 424 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 S+ + ++R L E L P + + D P+ ++T+ + L P+G Sbjct: 425 SILPENVDELRRRLNALAAEVLTPDDFRPVIQIDVPVMLRDITLPLLAELNRLAPYGFGN 484 Query: 496 PEPLFD-GHFRLLQQRLVGE--RHLKVMVEPVGG---------GPLLDGIAFNVDTALWP 543 P P+ + ++L+ R +G HLK+ V G G L D I N Sbjct: 485 PAPVLACKNIQVLEARRIGADGSHLKLRVCHEGCPGEVVMWNRGDLADKIPVN------- 537 Query: 544 DNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 V + + ++NE++G S+Q+ +I Sbjct: 538 ----SLVAMTFFPEVNEWQGRLSIQLRASDI 564 >UniRef50_B7K3K2 Single-stranded-DNA-specific exonuclease RecJ n=8 Tax=Cyanobacteria RepID=B7K3K2_CYAP8 Length = 655 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 187/568 (32%), Positives = 309/568 (54%), Gaps = 40/568 (7%) Query: 22 LPPLLRRLYASRGVRSAQE----LERSVKGM-LPWQQLSGVEKAVEILYNAFREGTRIIV 76 L PL+ ++ +RG+ + + L+ V+ + P ++ + ++ +L A G +I + Sbjct: 28 LSPLIAKVIINRGIDTVKSTQVYLDPEVENLPSPLKEFPDLATSITLLQEAITTGEKIAI 87 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+DADG TSTAL + A LG ++I Y +P+R +DGYG++ +V+ +G +I+TV Sbjct: 88 CGDYDADGMTSTALLLRAFSQLG-ADIYYEIPSRMKDGYGINERIVEAFADQGVGVILTV 146 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 DNGIS++ ++ A LG+ VI+TDHH + LP A+AI+NP L N P + LAGVGVA+ Sbjct: 147 DNGISAYQPIQRAIELGLTVIITDHHDLPEKLPPADAILNPKLLPENSPYRGLAGVGVAY 206 Query: 197 YLMLALRTFLR-DQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 L + L QG+ D LL+L LGT+AD+ PL NR +G+ R+ Sbjct: 207 ILAVTTAQSLGITQGFID----------PLLELFTLGTIADLAPLIGVNRRWLKRGLRRL 256 Query: 256 RAGKCRPGIKALLEVA--NRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIG 313 + G++AL++VA + + ++L D+GF LGPR+NA GR+ D + + LL D+ G Sbjct: 257 PKSQL-AGVQALMQVAGVSEEQKQLKPDDIGFRLGPRINAIGRIGDPQMIIELLTTDDPG 315 Query: 314 EARVLANELDALNQTRKEIEQGMQIEALTLCEK--LERSRDTLPGGLAMYHPEWHQGVVG 371 A A + + +N RK + + +++EA+ L E + +D + L + WH GV+G Sbjct: 316 IALERAMQCEQINAKRKAMCEQIELEAVHLVENTPIPWKKDRV---LVVVQSNWHHGVIG 372 Query: 372 ILASRIKERFHRPV-IAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMML-KFGGH 429 I+ASR+ ER+ PV I ++GS R I+ ++ +AL+ + G +L K+GGH Sbjct: 373 IVASRLVERYGVPVFIGTYEENPSKIRGSARGIKEFNIFEALD-----FCGDLLGKYGGH 427 Query: 430 AMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAG 489 A G SL F+QR ++L+P L+ V D + ++T + Q + Sbjct: 428 KAAGGFSLLAKNLDHFKQRLSTFAHQYLEPHHLKPLVSIDAEANFDQLTPLLHQSIDQLQ 487 Query: 490 PWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNG-- 546 PWG P+F + ++L+QR+VG+ HLK++ + +A+ W + Sbjct: 488 PWGIGNEFPVFWTPNVQVLEQRIVGKNHLKLVFCQDNNENQMKAVAWR-----WGEYFPL 542 Query: 547 VREVQLAYKLDINEFRGNRSLQIIIDNI 574 + V +AYKL N + G +++I I I Sbjct: 543 PKRVDIAYKLKENNWNGETNIEIEIIGI 570 >UniRef50_A7VWX6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWX6_9CLOT Length = 710 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 193/579 (33%), Positives = 312/579 (53%), Gaps = 43/579 (7%) Query: 10 REVDETADLPAELPPLLRRLYASRGVRSAQELERSVK---GMLPWQQLSGVEKAVEILYN 66 +E+ +T L L + RG S +++E + L ++ AVE ++ Sbjct: 31 KEIAKTIAQTYGLSQFLSMMLVIRGFHSKEQIESFLNTPDSCFDPFLLKDMDLAVERIHQ 90 Query: 67 AFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH 126 A + +I + GD+DADG TST+L + SLG +++ Y +P R +GYG++ + V + Sbjct: 91 ALDQFEKICIYGDYDADGVTSTSLLYSYLESLG-ADVMYYIPERESEGYGMNIDAVRKLS 149 Query: 127 ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH-LPGDTLPAAEAIINPNLRDCNFP 185 G +LI+TVDNGI++ VE+A SL I +VTDHH GD LP A A+++P+ DC+ P Sbjct: 150 ELGVRLIITVDNGIAAAREVEYANSLHIDTVVTDHHQQQGDILPPAVAVVDPHRLDCDCP 209 Query: 186 SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNR 245 K++AGVGV F L+ AL +D G+ + + N + DL A+GT+ D+VPL+ +NR Sbjct: 210 FKNMAGVGVTFQLISALEG--KDGGF----STLLENYS---DLAAIGTIGDIVPLEKDNR 260 Query: 246 ILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVA 305 +L G++++ R GI+AL+ + + +KL ++ + F+L PR+NAAGRL V Sbjct: 261 VLVKHGLAQLSRTD-RLGIQALITESGLEGKKLTSTAVAFSLVPRINAAGRLGSSRQAVK 319 Query: 306 LLLCDNIGEARVLANELDALNQTRKEIEQ--GMQIEALTLCEKLERSRDTLPGGLAMYHP 363 LLL + EA LA E+ NQ R++IE +QIE L ER D + L + Sbjct: 320 LLLSEYPDEAEDLAREIGEQNQQRQKIEGDIALQIEEY-LQAHPERRFDRI---LVVDGE 375 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMM 423 WH GVVGI+ASR+ E++ +P + + G+ + +GSGRS++G + DA+ + Sbjct: 376 NWHAGVVGIVASRVVEKYGKPCVVISREGELS-RGSGRSVEGFSLSDAVYACRE----HL 430 Query: 424 LKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483 ++FGGH MAAG++++ DK F+ + P + +++ D L P +++++ + Sbjct: 431 VRFGGHPMAAGITIKTDKIDDFRLAINAYAAQR-HPQMPYPKLLLDCKLRPQVLSLDIVE 489 Query: 484 LLRDAGPWGQMFPEPLFDGHFRLLQQRLVG------ERHLKVMV--EPVGGGPLLDGIAF 535 L P+G P PLF L L G +HL++ E V + + F Sbjct: 490 ELTLLEPFGTGNPAPLFG----LYSMTLTGITPCGNRKHLRLAFQREKVK----ITAMRF 541 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +V +P + LA L+ NE+RG SL I I ++ Sbjct: 542 SVTPEEFPYQPGDILDLAVTLERNEYRGEASLSIHIRDL 580 >UniRef50_C7RHH6 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Anaerococcus RepID=C7RHH6_ANAPD Length = 576 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 180/539 (33%), Positives = 288/539 (53%), Gaps = 49/539 (9%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L V+KA++++ + I + GD+D DG S +++L NI Y +P+R ED Sbjct: 58 LKDVDKAIDLIIETIQNNGEIRIFGDYDQDGIAS-VMTLLDGLLFYYDNISYDIPHRVED 116 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH---------LP 164 GYG+S + ++A A L++T DNGI+ V+ + I VIVTDHH Sbjct: 117 GYGISNNMSEKAIADKVSLVITCDNGITGFDQVKKLKENNINVIVTDHHQIEKEDNDGWV 176 Query: 165 GDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAE 224 LP A+ +INP+ D ++P K L G GVAF LM AL +++ +G F+ L Sbjct: 177 NQILPDADCVINPHRLDSSYPFKDLCGAGVAFKLMQAL--YMKLEGDFEY-------LFS 227 Query: 225 LLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLG 284 LL+ VA+GTV D+V L NRI +G+ R+ A + + IKALLE A +++ LG Sbjct: 228 LLEYVAMGTVCDIVSLTDENRIFVIEGLKRLNATE-KYAIKALLEEAGW-RKEINEYTLG 285 Query: 285 FALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEI-EQGMQIEALTL 343 F LGP +NA GRL + + LL+ ++I + ANEL LN RK + E+G+ + + + Sbjct: 286 FILGPLMNATGRLSTAKLAIELLMEEDIDKIHEYANELVNLNNKRKSLTEEGIN-KCIKI 344 Query: 344 CEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG-DGTLKGSGRS 402 E +D + + +Y P + + GI+A RIKE+++RP I + +G LKGSGRS Sbjct: 345 AEDKSYDKDDV---IVIYEPSIDESICGIVAGRIKEKYYRPTIILTNSSKEGVLKGSGRS 401 Query: 403 IQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEE---DKFKLFQQRFGELVTEWLDP 459 I+ +M DA+ D + FGGH MA GLS++ D+F++F + L + L+ Sbjct: 402 IETYNMHDAIVPFD----HKLESFGGHPMACGLSIKVDILDEFRIFLNKNSNLSKKDLE- 456 Query: 460 SLLQGEVVS-DGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHL 517 EV++ D + + +++E A+ L P+G+ P P+F + + ++G+ Sbjct: 457 -----EVINIDTQIKLSNLSLEFAESLESLSPFGKDNPRPIFANKGVDIADIAMIGKDKK 511 Query: 518 KVMVEPVGGGPLLDGIAFNV-----DTALWPDNGVR--EVQLAYKLDINEFRGNRSLQI 569 + ++ G + I FN +L D ++ ++ + Y D+NEFRGNR+LQI Sbjct: 512 TMRMKLFQNGNYYNAIKFNALDDYEYLSLKFDGKIKGNKIDIVYYPDVNEFRGNRTLQI 570 >UniRef50_Q1IIX8 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIX8_ACIBL Length = 579 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 184/567 (32%), Positives = 296/567 (52%), Gaps = 36/567 (6%) Query: 20 AELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRII 75 A + PL+ L A+RG++ + E L S+ + ++ G++ AVE L A + +++ Sbjct: 20 ANISPLVAVLLAARGIKYSDEAWMFLNPSLDALHSPYEMLGMDAAVERLMAAIAKKEQVL 79 Query: 76 VVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVT 135 + GD+D DG T+T + A+ G ++ VP+R +GYG+ EV+++A A G +LI++ Sbjct: 80 IYGDYDVDGTTATVILKTAIEICG-GRAEFHVPHRLLEGYGMRDEVIEKAAADGIRLIIS 138 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPG-DTLPAAEAIINPNLRDCNFPSKSLAGVGV 194 VD GI + A E A LG+ +IVTDHHLPG D +P A A++NPN C++P K L G GV Sbjct: 139 VDTGIRAFAAAETASRLGLDLIVTDHHLPGADGVPKALAVLNPNQTGCDYPCKHLCGAGV 198 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 AF + AL +R IP+ L + A+ T+AD VPL NR+ G+ Sbjct: 199 AFKVAQALLE-------KSDRARLIPS---FLKMAAIATIADAVPLTGENRVFVSLGLEG 248 Query: 255 IRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 +R G+K LL + D + L+ D+ F + PRLNAAGR+D V L + Sbjct: 249 LRK-PVNAGLKELLALCRIDGRTLSTQDVAFRIAPRLNAAGRMDVARDVVELFTTRDAKH 307 Query: 315 ARVLANELDALNQTRKEIEQGMQ--IEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGI 372 A+ +A L+ LN R+E E + IE + + R + + EWH+GV+GI Sbjct: 308 AKDVAQHLNKLNGDRQEEEARIMAAIEKQLADDASFKDRYS----FVLDGAEWHRGVIGI 363 Query: 373 LASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMA 432 ASR+ +R HRP + A +G GSGRSI H+ +ALE L+ ++GGHA A Sbjct: 364 CASRVVDRVHRPALVIA-RHEGEAHGSGRSIPSFHLLNALESCADLFS----RYGGHAHA 418 Query: 433 AGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWG 492 G +L ED+ +++ + L P+ E+V D L ++++ ++ +L+ P+G Sbjct: 419 VGFALPEDRLPQLREKLEAYARQHLKPADFVPEMVYDTELPLSDVSEKLYLMLQKLEPFG 478 Query: 493 QMFPEPLFDGHFRLLQ--QRLVGERHLKVMVEPVGGGPL---LDGIAFNVDTALW---PD 544 P+P+F L R + E+H+K+ + P G + +A+ + L P Sbjct: 479 MSNPQPVFVSRGARLAGPARTLKEKHVKMRLAPQSNGGFQRSFEALAWRKNEKLQAEPPL 538 Query: 545 NGVREVQLAYKLDINEFRGNRSLQIII 571 N + +A+ +D N+ LQ+I+ Sbjct: 539 NMGDLLDVAFTIDHNDHPDFGGLQLIL 565 >UniRef50_D2MJC9 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJC9_9BACT Length = 582 Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 183/523 (34%), Positives = 286/523 (54%), Gaps = 24/523 (4%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L +E+AV+ L+ A + RI GD+D DG +T+L +L RS+G + + +P+R E+ Sbjct: 79 LPDMERAVDRLHLAIQRCERICFYGDYDVDGMAATSLHLLFWRSVG-AQAEVYIPDRQEE 137 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYGL + + G L++T D G +S+ +E ARSLG+ VIVTDHH +P A Sbjct: 138 GYGLHESAIRKLGHGGVSLLLTADCGTTSYREIEVARSLGMDVIVTDHHQLQSRMPEPVA 197 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 INP D +P + L G+A+ ++ A + R G D +P + DLVAL + Sbjct: 198 FINPYRPDSVYPFQGLCSGGLAYKVVEA---YARKYGAAD-----VP-VESFRDLVALSS 248 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +AD+VPL NR+L G++++ G R GI+AL + + +A +GF + PRLNA Sbjct: 249 IADMVPLRDENRVLVRDGLAQVAQGN-RCGIRALTQDLGLNG-TCSAGTIGFRVAPRLNA 306 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGRL +GV LL D+ A LA +L+ LN+ R+EIE+ M EA+ E ++ Sbjct: 307 AGRLAHAGLGVRLLTADSEPVALQLAQQLEELNRRRREIEEAMTREAIAQVEAGDQ---- 362 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 P + + WH GVVGI+A+R+ ER+HRP A DG KGS RS+ G + AL Sbjct: 363 -PHAIVVGAEGWHSGVVGIVAARLVERYHRPAAVVAFDRDGLGKGSVRSVAGFDVCQALR 421 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + ++ FGGH MAAGL++ + + F +RFGE V +D SL + D ++ Sbjct: 422 QCQR----DLVAFGGHPMAAGLTVRREAYADFSRRFGEGVEGAMDDSLKVPTLDVDAAVA 477 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 A++ + L P+G PEP L +L++++VG+ HLK++V G P L+ Sbjct: 478 LADVQFPFVRELERLQPFGMGNPEPTLMSRGVSVLEKKVVGDNHLKLVVRQPGSVP-LES 536 Query: 533 IAFNV-DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 I F + A D G + + ++NE++G+ +Q+ + ++ Sbjct: 537 IGFRMGGLAHAIDAGHGRIDAVFTPELNEWKGSTRIQLRLRDV 579 >UniRef50_D1AWA1 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWA1_STRM9 Length = 883 Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 185/578 (32%), Positives = 300/578 (51%), Gaps = 51/578 (8%) Query: 17 DLPAELPPLLRRLYASRGVRSAQELER----SVKGMLPWQQLSGVEKAVEILYNAFREGT 72 DLP + L + ASRG+ +++ S++ + +L + A + +A +E Sbjct: 18 DLPIDNNIL--NILASRGIVDEKDIVNFINPSLENLEDPLKLKDLGLAASYILDAIKEYK 75 Query: 73 RIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQL 132 I + GD+D DG TST+L LA + +G NIDY +P R E GYGL+ + + + +G L Sbjct: 76 NICIYGDYDVDGITSTSLLYLAFKKIGAKNIDYYIPLRNE-GYGLNKDAIQEIKNKGTDL 134 Query: 133 IVTVDNGISSHAGVEHARSLGIPVIVTDHH-LPGDT-LPAAEAIINPNLRDCNFPSKSLA 190 I+TVD GISS+ VE SL + I+TDHH +P D LP A A INP D + ++A Sbjct: 135 IITVDCGISSYHDVEFINSLDMKAIITDHHDIPSDKKLPRALACINPKRLDNEYSFPNIA 194 Query: 191 GVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQ 250 GVGVAF +LA F R G +E + LD+ +LGT+AD++P+ NRI+ Sbjct: 195 GVGVAF--LLAYELF-RRLGIKEE-------IYSYLDIASLGTIADIMPIIKENRIIVKY 244 Query: 251 GMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCD 310 G+ +++ G++ +L N ++L D+ F + P NAAGRL D +GV LL+ D Sbjct: 245 GLEKLK-NSSNLGLRTILNKLNLKDKELTTGDISFKIAPVFNAAGRLADAKLGVKLLISD 303 Query: 311 NIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYH-PEWHQGV 369 N E +LA+ L + N RK+I Q E +T R +D + + H P +H G+ Sbjct: 304 NQNEINILADNLISNNIYRKKI----QDEIITSVLDELREKDISNKYILISHSPNYHHGI 359 Query: 370 VGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGG 428 +GI+AS++ E +++P I +G S RS++G ++ AL + L ++KFGG Sbjct: 360 IGIVASKVLETYYKPCIIMEENLEEGIAVASCRSVEGFNITKALSYVSNL----LIKFGG 415 Query: 429 HAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 HA AAG +++ + +F+++ E L+ L + D + +++ E Q L Sbjct: 416 HANAAGFTIKLENIDIFKEKIEAYAKEQLENIKLTKNIKIDMKIPAQKISYEFIQSLNLL 475 Query: 489 GPWGQMFPEPLFDGHFRLLQQ-RLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDN 545 P+G P PL ++ + VG E+HLK ++ G F+V A+W + Sbjct: 476 KPFGFGNPTPLLMSENCIIHNPKTVGSNEQHLKFDIDQKG---------FSVKNAIWFNG 526 Query: 546 G-----VREVQLAY----KLDINEFRGNRSLQIIIDNI 574 G +R+ + Y KL+ NE++ I+I+++ Sbjct: 527 GSNLQELRKNHIFYDVVFKLETNEYKDRFYPSIMIEDM 564 >UniRef50_B0VEZ1 Putative ssDNA exonuclease, 5'--> 3'-specific n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VEZ1_9BACT Length = 574 Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 185/575 (32%), Positives = 302/575 (52%), Gaps = 41/575 (7%) Query: 10 REVD-ETADLPAE--LPPLLRRLYASRGVR---SAQELER-SVKGMLPWQQLSGVEKAVE 62 +E++ E L AE LP L+ L +G++ SAQE + S+ + +EKAV+ Sbjct: 14 KEINPEIEKLSAEFKLPRLVAELLYRKGIKTVNSAQEFFKPSMDNLYDPYLFPDMEKAVQ 73 Query: 63 ILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVV 122 + A +I + GD+D DG T+TAL L ++ +G +NID+ +P+R DGYGLS + Sbjct: 74 RILRAIDSKEKITIYGDYDVDGTTATALLYLGLKRIG-ANIDFYIPHRMIDGYGLSLGSL 132 Query: 123 DQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDC 182 D G+ LI++VD G+++ + S+G+ +I+TDHH P D LP A AIINP L Sbjct: 133 DALRENGSSLIISVDCGVNAIEEINAINSMGMEIIITDHHNPKDELPPAFAIINPKLPGT 192 Query: 183 NFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAI---PNLAELLDLVALGTVADVVP 239 +P + LAGVGVA+ L++A+ N+ I N + +DLVA+GT+AD+VP Sbjct: 193 KYPYEHLAGVGVAYKLLMAIYN-----------NLGIDSAENKLKYMDLVAVGTIADIVP 241 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 L + NRI G+ + K G+ AL++++ + + L +D+ F + PR+NAAGR+ Sbjct: 242 LTSENRIFASIGLQHLIEKK-NLGLNALVQISGLNQKNLDTTDIVFGIAPRINAAGRMGS 300 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL--PGG 357 SV V LL+ + ++ LA ++ N R++ +Q EA C+ +E+ L Sbjct: 301 ASVSVELLISTDEAKSMELAEIIEHQNSLRQQEDQKTFQEA---CDIIEKKYKDLQQTSC 357 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 + + +WH GV+GI+AS++ E+++RPVI + DG GSGRS+ + +AL++ + Sbjct: 358 MVVSSDDWHPGVIGIVASKLVEKYYRPVIMIS-FKDGFGSGSGRSVADFDLFEALKQTEH 416 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 + FGGH A GL++ ++ F+ V+E L +Q + D + + Sbjct: 417 ----NLHSFGGHKYAVGLTIYQEYLDRFENELTRFVSENLRLEQIQPPLQIDAEIELYNI 472 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ--RLVGERHLKVMVEPVGGGPLLDGIAF 535 + L P+G P+F + VG HLK+ V V G + I + Sbjct: 473 NNTLLDALEHFAPFGPDNTRPVFMTRNVTIASYPYNVGRNHLKLKV--VKDGIYFNLIGY 530 Query: 536 NVDTA--LWPDNGVREVQLAYKLDINEFRGNRSLQ 568 N+ L NG ++ +AY L+ N F N ++Q Sbjct: 531 NLGDYLPLLKKNG--KLDIAYTLEYNRFGNNLTIQ 563 >UniRef50_A3DBX0 Single-stranded-DNA-specific exonuclease RecJ n=4 Tax=Clostridium thermocellum RepID=A3DBX0_CLOTH Length = 763 Score = 268 bits (685), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 173/558 (31%), Positives = 305/558 (54%), Gaps = 44/558 (7%) Query: 25 LLRRLYASRGVRSAQELERSVKGML--PWQ--QLSGVEKAVEILYNAFREGTRIIVVGDF 80 L+ R++ +RG ++ + + + + L P + + + +AV+ + A +I V GD+ Sbjct: 27 LVARIFYNRGYKNPETIRQMLNPELYVPTKPDEFPDMPRAVDRILRAADNEEKICVYGDY 86 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 D DG TST ++++ + S + Y VP+RF +GYG++ E+V + G LI+T D GI Sbjct: 87 DVDGVTST-VTLVECLNFFTSKVVYHVPDRFTEGYGMNEEIVRKLAQDGVSLIITCDCGI 145 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 S+ + A+ LG+ V++TDHH D LP A+AI+NP L + +++++G G+ ++L L Sbjct: 146 SNVREITLAKELGMDVVLTDHHTVPDELPPADAILNPKLLEEGHRARNISGCGMVYFLCL 205 Query: 201 ALRTFLRDQGWFDERNIAIPNLAE-LLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 AL L +G+ P+ AE LD++AL +ADVV L+ NR L + + + + Sbjct: 206 AL---LEKKGF--------PDRAERFLDMLALSLIADVVSLNGENRYLLQKALPALFNTR 254 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 R G++ LLEVA R+ + D+ F + PR+NAAGR+D + V L LC ++ +AR++A Sbjct: 255 -RIGLRQLLEVAERNGKLENEEDVAFQIAPRINAAGRMDTARLPVELFLCQDLEKARIMA 313 Query: 320 NELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKE 379 ++D+LN RK ++Q + EA+ + E ++++ L +Y WH G++GI A RI E Sbjct: 314 EKIDSLNTERKRVQQSIVDEAVEMVETRKKNKTI----LVLYKEYWHHGIIGIAAGRICE 369 Query: 380 RFHRPVIAFAPAGDG-TLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLE 438 + +P I F+ DG T GS RSI+ +++ + ++ G +LKFGGH+ AAGLS+ Sbjct: 370 LYRKPAILFSLKEDGITAVGSARSIEEVNIYELIKEC----SGKLLKFGGHSQAAGLSIR 425 Query: 439 EDKFKLF-QQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 +D + F Q E + ++ V +D L ++ E+ ++ AGP+G+ F Sbjct: 426 KDDIEEFISQIEMEAENRYFIKDMVN--VNADMELGIEDINEELYDRIQSAGPYGEGFEA 483 Query: 498 PLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPL-----------LDGIAFNVDTALWPDN 545 P F + +L R+ ++H +++E G + +G F+V + +N Sbjct: 484 PCFCIRNVIVLSDRMTEKKHHIMVLEDQKGNRIPAVKWFGEDESFEGRCFDVTCRIGRNN 543 Query: 546 GVRE--VQLAYKLDINEF 561 ++ +QL + + F Sbjct: 544 YSKDAGIQLTLEYMVESF 561 >UniRef50_A9B300 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B300_HERA2 Length = 573 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 183/562 (32%), Positives = 294/562 (52%), Gaps = 35/562 (6%) Query: 21 ELPPLLRRLYASRGVRSAQELERSVKGMLPWQQ------LSGVEKAVEILYNAFREGTRI 74 E PLL + +RG R A +E+ + + W+Q L +++AVE + A + R+ Sbjct: 26 EYHPLLAAILWNRGWRDAAAVEQFLN--IDWKQRHDPFLLHDMDRAVERIKQAVAQQQRV 83 Query: 75 IVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV 134 +V GDFD DG T L + ++ G Y +P R +GYGL+ +++ H G L+V Sbjct: 84 VVYGDFDTDGVTGVTLLMQLFKAFGLPVRPY-IPKREGEGYGLNLAAIEKLHQEGLDLLV 142 Query: 135 TVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGV 194 TVD GIS+ A + A LG IV DHH P LP A A+++P DC +P K L GVGV Sbjct: 143 TVDCGISNVAEISRANELGFDTIVLDHHQPPANLPPAYAVVDPKRSDCAYPFKGLCGVGV 202 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNL--AELLDLVALGTVADVVPLDANNRILTWQGM 252 AF L AL W I NL ++LD+VALGT+AD++PL NR+L G+ Sbjct: 203 AFKLYEAL--------W--RAGIQPNNLRARDILDVVALGTIADMMPLTGENRVLVHFGL 252 Query: 253 SRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNI 312 + + RPG+KALL VA + K+ AS +GF L PR+NAAGRL D + +LLL + Sbjct: 253 QAMNESQ-RPGLKALLRVAGVEQGKIDASSVGFRLSPRINAAGRLVDARIAYSLLLAPDQ 311 Query: 313 GEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGI 372 +A A++L++ N R+ + + +Q A L + + + L + ++H GVVG+ Sbjct: 312 AQADGFADQLNSTNIERQALTRDVQQAARELAQNSGQLDQRI---LVIVGEDFHHGVVGL 368 Query: 373 LASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMA 432 A ++ E F RPV+ D + +GS RSI G ++ +AL L+ K+GGHA A Sbjct: 369 AAGKLAEEFARPVLVMGKEEDRS-RGSARSIPGFNIVNALAECADLFE----KYGGHAAA 423 Query: 433 AGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWG 492 AG ++ + +QR + + + +++ ++ D + ++ ++ +L P+G Sbjct: 424 AGFTIANEHIPELEQRLQAIANQQITDAMMVPQLPIDAEATFDQLNLDTLAVLEKMAPFG 483 Query: 493 QMFPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVRE 549 P+P F +++ R VG +HL++ ++ G I FN+ L + Sbjct: 484 LENPQPRFCSRRVTVIEARGVGAENQHLRLRLQQ--GRHYQTAIGFNLGDWLAELPNGSQ 541 Query: 550 VQLAYKLDINEFRGNRSLQIII 571 + + Y + INE+ G S+Q+ + Sbjct: 542 IDIVYTVGINEWNGRSSVQLTL 563 >UniRef50_C5EEP4 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EEP4_9FIRM Length = 590 Score = 268 bits (684), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 183/589 (31%), Positives = 298/589 (50%), Gaps = 57/589 (9%) Query: 22 LPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 + P+ R+ +RG+ ++ L SVK + + L +EKAV IL +EG I +V Sbjct: 18 ISPVTARIIRNRGIEGMEDIGHYLHGSVKDLHDPRLLPDMEKAVGILRGKVQEGKPIRIV 77 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG ST L A++ +G +N+D+ +P+R +DGYG++ +++ A G I+T D Sbjct: 78 GDYDIDGVCSTYLLYRALKRIG-ANVDFEIPDRIKDGYGINEMIIEAAAEDGIDTILTCD 136 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHL----------PGD--------------------T 167 NGI++ + + A+ LG+ V+VTDHH GD Sbjct: 137 NGIAAVSQIARAKELGMTVVVTDHHDILVEESGNSGAGDDAGGQDGNDADAEDSCQGTEV 196 Query: 168 LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLD 227 LP A+AI+NP +R C +P + G VA+ L+ L F+E + ++L+ Sbjct: 197 LPPADAIVNPKMRGCRYPFPGICGGMVAYKLVQVL---------FEECGVPAEEWLDMLE 247 Query: 228 LVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFAL 287 + A+ TV DV+ L NRI+ +G+ R+ G++ L+E N + + A +GF + Sbjct: 248 IAAIATVGDVMKLQGENRIIVKEGLCRL-GHTSNLGLRKLIEKNNLASDSITAYHIGFVI 306 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 GP LNA+GRL + + LLLC++ EA +A EL LN RK++ Q +A + ++L Sbjct: 307 GPCLNASGRLQTAKLALGLLLCEDEMEADRMAQELKELNDQRKDMTQAGIDDAAAMVDEL 366 Query: 348 ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLH 407 + L ++ P+ H+ + GI+A R++ER+ +P A +G KGSGRSI+ H Sbjct: 367 YQDDKV----LVVFLPDCHESLAGIVAGRLRERYGKPSFVLTRA-EGCAKGSGRSIEAYH 421 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 M AL + L +LKFGGH MAAG SL E+ F++R E E L V Sbjct: 422 MFHALVEVKDL----LLKFGGHPMAAGFSLREEDVDEFRRRLNENARERLTEDDFIPRVW 477 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGG- 526 D + ++ + L P+GQ +P F +++ V R+ V+ + Sbjct: 478 IDVAMPFEYISESFVKELELLEPYGQGNEKPQFAQKNMVIRSASVMGRNRNVVRLSLVNE 537 Query: 527 -GPLLDGIAFNVDTALWPDNG-VREVQLAYKLDINEFRGNRSLQIIIDN 573 G ++G+ F + G R + + Y +NE+ GNR+LQI++ + Sbjct: 538 RGVSMNGVVFTEGDLFMEEKGNSRVMDIIYYPGVNEYNGNRNLQIVVKD 586 >UniRef50_A8SGF1 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SGF1_9FIRM Length = 710 Score = 267 bits (683), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 171/460 (37%), Positives = 253/460 (55%), Gaps = 27/460 (5%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L+ ++ A + ++ A G I V GD+D DG T+TAL ++ +G S + ++P+R D Sbjct: 91 LTDMDAACQRIWQAIDNGETIAVFGDYDVDGVTATALLYQHLKGMGAS-VKCMLPSREGD 149 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYGLS + H +G LIVTVDNGIS+ + A SLG+ +I+TDHHLP +TLP A A Sbjct: 150 GYGLSKNAIQSMHNKGCTLIVTVDNGISAVEEADFAASLGMDLIITDHHLPPETLPKAVA 209 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 +++P D + P K L G GVAF L AL G E + DL A+GT Sbjct: 210 VVDPRREDDHSPFKGLCGAGVAFKLCAAL------DGCPPEEMLDYCG-----DLAAVGT 258 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 VADV+PL NR L G+ +++ RPG ALLE + + A ++ +A+ PR+NA Sbjct: 259 VADVMPLVGENRTLVKAGLRQLQQTD-RPGFGALLEEVGLAGKPITAENISYAIAPRINA 317 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL-ERSRD 352 AGR+D+ + L+LC++ A LA++L+ +N R+E EQ + A L E+ ER D Sbjct: 318 AGRMDNAVTALQLVLCEDPDRAEELAHKLNEINAHRQETEQQIFKAAEELLEQQPERLDD 377 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 + + ++ +WH GV+GI+ASR+ ER RPVI G KGSGRS+QG ++ + Sbjct: 378 RI---MLLWGRDWHPGVIGIVASRLVERTGRPVIVVTIDEHGEGKGSGRSVQGFNLHACI 434 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 L ++++GGHAMAAGLS+ E+ ++R E P L + D + Sbjct: 435 GSCADL----LVRYGGHAMAAGLSVREENLPELRRRLNEWAAREC-PVLHTPPLTCDVTI 489 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLV 512 +T+E + L P+G P P+F LLQ +V Sbjct: 490 HLDRITVESVRHLDQLAPYGAENPTPVF-----LLQSAVV 524 >UniRef50_B0TAW1 Single-stranded-DNA-specific exonuclease recj n=2 Tax=Heliobacteriaceae RepID=B0TAW1_HELMI Length = 577 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 201/570 (35%), Positives = 290/570 (50%), Gaps = 50/570 (8%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 L P L A RG+ A E ER ++ M + + G A I+ + I V Sbjct: 17 LTPFQAALLARRGIGPA-EAERFIRSGIEDMYDPRLMKGATAAAAIISDTIDRQVPITVY 75 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGA-QLIVTV 136 GD+D DG T TAL V ++ LG S +D+ + +RF +G+G+ P +++ RG +LI++V Sbjct: 76 GDYDCDGVTGTALLVESLTKLGAS-VDWYINSRFVEGFGMHPLGIEEIARRGTPRLIISV 134 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 DNGIS+ V AR LG+ V++TDHH P + LP A+ I+NP C +P K LAGVGVAF Sbjct: 135 DNGISAGDAVRRARELGMQVVITDHHEPSEELPPADVIVNPKQAGCAYPEKHLAGVGVAF 194 Query: 197 YLMLAL-------RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTW 249 +M L R LR LDLVA+GTVADV+P+ NRI Sbjct: 195 KVMQILFQAAGRPREILRS-----------------LDLVAIGTVADVMPVTGENRIFIK 237 Query: 250 QGMSRIRAG-KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM-SVGVALL 307 G+ I G + R G++A+ + AN A LGF GP LNA GR+D + + V LL Sbjct: 238 NGLKLINWGNRTRIGLQAIKDAANLKGDVNAHYHLGFIFGPMLNATGRIDGVPAAAVELL 297 Query: 308 LCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQ 367 L + A LA +L +N+ R+E+ + ALT + + PG + +Y+P +H+ Sbjct: 298 LTADRHRAAGLAAQLRKVNEERQELTRRQTEVALTQAQTKMQGTGA-PGFIVVYNPAFHE 356 Query: 368 GVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKF 426 G+VG++ASR+KE +HRPV+A + + G LKGS RS++G ++ E L ++LK Sbjct: 357 GIVGLIASRLKEVYHRPVLALTDSHEPGVLKGSVRSVKGFSVK---EHLIDGCADLLLKG 413 Query: 427 GGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLR 486 GGH MAAG SL ++ R V + L V D L P EM + + Sbjct: 414 GGHEMAAGCSLIKENLAALCCRLDAAVHQ-APADLFVPSVGIDYVLEPKEMDRGLVTQIE 472 Query: 487 DAGPWGQMFPEPLF-DGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALWP 543 + P+G FP P F F Q R VG HL++ G + I FN A Sbjct: 473 EFAPYGAGFPRPNFLLAPFWPEQVRFVGRDGNHLRL------SGQGVIAIGFNQAEAFRK 526 Query: 544 DNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 N + L +IN++ +RS+Q + N Sbjct: 527 ANPQGTLALLGLPEINDY--DRSVQFRLRN 554 >UniRef50_C4G696 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G696_ABIDE Length = 580 Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 183/579 (31%), Positives = 307/579 (53%), Gaps = 52/579 (8%) Query: 22 LPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 + + R+ +RG+ + ++++ + K + + + + A EIL EG +I ++ Sbjct: 23 ISKIAARVLVNRGMSNDEDIDEYLNAEEKELARPELMRDLTNACEILNRKINEGEKIRII 82 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG ST + RS+G ++I Y++P+R +DGYG++ ++V++A G IVT D Sbjct: 83 GDYDVDGVCSTFVLYDFFRSMG-ADISYVIPHRVQDGYGINIDIVNKAKEDGIDTIVTCD 141 Query: 138 NGISSHAGVEHARSLGIPVIVTDHH-LP-GDTLPAAEAIINPNLRDCNFPSKSLAGVGVA 195 NGI+++ V+HA+ +G+ V++TDHH +P + LP A+ + NP DCN+P K L G GVA Sbjct: 142 NGIAAYEQVKHAKEIGLTVLITDHHDIPVNNDLPPADTVTNPKREDCNYPFKGLCGAGVA 201 Query: 196 FYLMLALRTFLRDQGWFDER-NIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 + L + + G + I N + L AL T+ DV+ L NRI+ +G+ Sbjct: 202 YQL---INHYAEKYGNNSAKLKTEIKN--KYLAFTALATICDVMELIGENRIIVKKGLKA 256 Query: 255 IRAGKCRPGIKALLEVA---NRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 I + G++ALLEV+ N+D ++ GF +GP +NA+GRL+ + L L + Sbjct: 257 IYNTE-NVGLRALLEVSGLVNKD--EITVYHCGFIIGPMINASGRLESAVKAIKLFLESD 313 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVG 371 A ANEL LN RK+I + I A + E E D + L + P+ H+ + G Sbjct: 314 RERALSEANELQGLNNERKDITEQSLIRATEIAESSEYLNDKV---LVILVPDCHESIAG 370 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 I+A RIKE+F++P + F A G +KGSGRSI+ +M + + + + KFGGH M Sbjct: 371 IVAGRIKEKFYKPTLIFTYAERG-IKGSGRSIEDYNMFEEISKCSECFS----KFGGHPM 425 Query: 432 AAGLSLE----EDKFKLFQQRFGELVTE--WLDPSLLQGEVVSDGPLSPAEMTMEVAQLL 485 AAG SL+ E++ ++F + +++ E L L+ ++ D L P +T E+ + L Sbjct: 426 AAGFSLKGETTEEQIEVF-NKLRKMLNENTTLTEEELKPKIFFDMELPPYYVTEELIEEL 484 Query: 486 RDAGPWGQMFPEPLFDGHFRLLQQ-RLVGERHLKVMVEPVGGGPLLDGIAFNVDTALW-P 543 P+G P F +Q R++G+ + + +E L DG V A+W Sbjct: 485 LRFEPYGTGNKVPTFARRNMYIQTYRVIGKNNNAIKLE------LTDGGEGQVHNAIWFG 538 Query: 544 DNGV----------REVQLAYKLDINEFRGNRSLQIIID 572 D V +++ + Y INE+RG +++Q+ I+ Sbjct: 539 DASVFEEYLLNKEEKKLDIIYSPQINEYRGFKNIQLKIE 577 >UniRef50_C6V5J7 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Neorickettsia RepID=C6V5J7_NEORI Length = 577 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 181/497 (36%), Positives = 264/497 (53%), Gaps = 30/497 (6%) Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 L G+++ +E + A E +I++ GD+D DGATS+AL R +G +D +P+R Sbjct: 67 SLLGMKEGIERILRAISEDEKIVIYGDYDVDGATSSALLKNYFREIG-KKVDIYIPDRIT 125 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 +GYG + Q G L +TVD GI +HA +E A ++G+ +IV DHH+ D +P A Sbjct: 126 EGYGPNKAAFMQLKKEGYTLCITVDCGILAHAEIEVANTIGLDIIVVDHHISADVIPPAT 185 Query: 173 AIINPNLRDC-NFP-SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A+INPN D N ++ LA VGV+F L++ L LR +G+FD + PNL LDLVA Sbjct: 186 AVINPNRIDQPNVAYTEHLAAVGVSFLLLIGLNVVLRAKGFFDNKK--EPNLINYLDLVA 243 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPR 290 LGTV DVV L NR QG+ I K G+ ++L + L A LG+ +GP Sbjct: 244 LGTVCDVVRLTGINRAFVKQGLKVIDQRK-NLGL-SILTKELKLFSTLEAYHLGYVIGPH 301 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NA GR+ S+G LL N EA +A L LN RKEIE+ E +T EK S Sbjct: 302 INAGGRISQSSLGSRLLSTQNPAEAEEIATTLCVLNLKRKEIERAALQEVITQVEK--TS 359 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRD 410 + + A WHQG++GI+ASRIK+ +H P I + G+ K S RSI+G ++ Sbjct: 360 KKIILAASA----NWHQGIIGIVASRIKDLYHLPTIILSIDGN-IAKASARSIKGANIGM 414 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKF----KLFQQRFGELVTEWLDPSLLQGEV 466 A+ + G++++ GGH MAAG S E +K + F++ F E+ T Q + Sbjct: 415 AV--IAAKESGLIIEGGGHKMAAGFSCETEKIPAIREFFEEYFKEVDT--------QESI 464 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGER-HLKVMVEPV 524 D L +T ++ L+ P G PEP F R++ R++GE H+ + V Sbjct: 465 HIDSELYIDTITSDLCDDLKILAPHGSGNPEPKFVLKDVRVVTSRVIGEDGHIACTLRDV 524 Query: 525 GGGPLLDGIAFNVDTAL 541 ++ GIAF D L Sbjct: 525 RTHTVIRGIAFRADPIL 541 >UniRef50_A8MGN3 Single-stranded-DNA-specific exonuclease RecJ n=11 Tax=Clostridiales RepID=A8MGN3_ALKOO Length = 587 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 171/534 (32%), Positives = 294/534 (55%), Gaps = 45/534 (8%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLPW----QQLSGVEKAVEILYNAFREGTRIIVV 77 + PL+ +L +R + + + + L +++ V KA IL + RI ++ Sbjct: 22 ISPLICKLLVNRSITEERLISSFIDSNLDHLHDPKKMKDVVKAASILKSKIETHKRIRII 81 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG ST + +A+ G +++DY +P+R +DGYG++ +++++ + G I+T D Sbjct: 82 GDYDVDGVISTYILFMALSKCG-ADVDYDIPDRIKDGYGINRSIIERSKSEGIDTIITCD 140 Query: 138 NGISSHAGVEHARSLGIPVIVTDHH-LP---------GDTLPAAEAIINPNLRDCNFPSK 187 NGIS+ +++A+ LG+ VIVTDHH +P A+AIINP +C++ K Sbjct: 141 NGISAIEPIQYAKDLGLTVIVTDHHDIPFIEDEESKRTFISSCADAIINPKQEECDYEFK 200 Query: 188 SLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRIL 247 SL G GVAF L+ Q +++ I + L++ VA+ TV DVV L NRI Sbjct: 201 SLCGAGVAFKLI---------QVLYEKMKIPMEESFRLIEFVAIATVCDVVDLIDENRIF 251 Query: 248 TWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALL 307 QG+ I+ G+ AL++ + +++ ++ LGF +GP +NA+GRLD+ G+ LL Sbjct: 252 VKQGLEAIKTTN-NLGLMALMKESGIESKSISVYHLGFIIGPCINASGRLDNAKKGLRLL 310 Query: 308 LCDNIGEARVLANELDALNQTRKEIE-QGMQIEALTLCEKLERSRDTLPGGLAMYHPEWH 366 + ++ E LA EL LNQ RK++ +G++ +A+ + E + + +Y PE H Sbjct: 311 IAEDREEVDSLAKELYELNQDRKDMTIKGVE-KAIEIIEGTDIKNHKV---FVIYMPEVH 366 Query: 367 QGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKF 426 + + GI+A RIKE++H P I + +G +KGSGRSI +M + L + L + KF Sbjct: 367 ESLAGIIAGRIKEQYHVPTIVLTKSEEG-VKGSGRSIDCYNMFEELLKCKDL----LRKF 421 Query: 427 GGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLR 486 GGH MAAGLSL+ED+ + +++ + VT+ + L+ + D L + E+ + + Sbjct: 422 GGHPMAAGLSLDEDQVENLREKLNQ-VTDLTEEDLIPT-INLDMGLEIDRIDYELIEDIE 479 Query: 487 DAGPWGQMFPEPLF-DGHFRLLQQRLVGER----HLKVMVEPVGGGPLLDGIAF 535 P+G+ +PLF D + R+++ ++G+ LK++ + G +DGI F Sbjct: 480 RLSPFGKGNNKPLFGDKNIRVIKGHILGQNRNVLKLKLLSKQ---GKYMDGIYF 530 >UniRef50_A7HJW8 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Thermotogaceae RepID=A7HJW8_FERNB Length = 989 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 180/543 (33%), Positives = 291/543 (53%), Gaps = 48/543 (8%) Query: 10 REVDE--TADLPAEL--PPLLRRLYASRGVRSAQELERSVKGMLPWQQ-------LSGVE 58 R+VDE +L L + +L RG+++ ++ +R + P +Q L +E Sbjct: 6 RQVDEHLVQELSERLGVNKFVAKLLVLRGIKTEEDAKRFLN---PTRQTLRSPFLLKDME 62 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 KAVEIL A G ++I+ GD+D DG T TA+ + G N+DY +P R ++GYG+ Sbjct: 63 KAVEILLRARDNGEKVIIHGDYDVDGITGTAVLYTFLSENGW-NVDYYIPKRVDNGYGIQ 121 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 P+ V++ +G + I+TVD GI++ V+ A+ LG+ +++TDHH P +TLP A+AI+NP Sbjct: 122 PQFVEEIVLKGFKTILTVDCGITAFEAVDKAKELGLNIVITDHHQPKETLPNADAIVNPK 181 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 D +P K AGVGVA+ L+ AL ++ NI ELLDLVALGTVAD+V Sbjct: 182 RPDDEYPFKEFAGVGVAYKLITALA---------EKMNIPPSVTDELLDLVALGTVADMV 232 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 L NR + +G+ R+ + GI L++ ++ D+G+ + P+LNAAGRLD Sbjct: 233 ELLDENRYIVREGLKRLN-NTAKLGIVRLIQKIG--IATISTRDIGYRIAPKLNAAGRLD 289 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 L++ + A L L N TR+ IE + EA+ + E + D+LP + Sbjct: 290 SPDDAFKLIVTKDEASATELVEILLGYNVTRQGIEAKIYNEAVQMIES--NNLDSLPIVV 347 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 A Y WH GV+GI+A+R+ +++PV+ + DG +GS RS+QG+++ + LER + Sbjct: 348 A-YGYGWHLGVIGIVATRLVHLYNKPVMVIS-IEDGVGRGSARSVQGVNIIELLERFRDI 405 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 + FGGH MA G SL+E+K + E + E + ++ + D +S E+ Sbjct: 406 FED----FGGHTMALGFSLKEEKIPELIKAIREKIRE--EDIKVEEVIAVDEKISVDEIN 459 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ------RLVGERHLKVMVEPVGGGPLLDG 532 ++ + + P+G PEP+F L+Q ++ GE + + G ++G Sbjct: 460 EDLLKSIELLEPYGHGNPEPVF-----LIQNSPVERFKIFGETGYNIRLTLKGNSNSIEG 514 Query: 533 IAF 535 + F Sbjct: 515 VGF 517 >UniRef50_A9IVX3 Single-stranded-DNA-specific exonuclease n=3 Tax=Bartonella RepID=A9IVX3_BART1 Length = 594 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 194/562 (34%), Positives = 297/562 (52%), Gaps = 23/562 (4%) Query: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 P L R+ ++RGV + ++ +++ ++P + ++ A E + A ++ V Sbjct: 40 FPDQLARVLSARGVDETEAVAFIDPTLRMLMPDPESFRDMQCAAERIVKALLNQEQVAVF 99 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DGA ++AL R G + +P+R +GYG + + + GA+LI+TVD Sbjct: 100 GDYDVDGACASALIARFFRYFGIE-VKIYIPDRIVEGYGPNEQAMRMLVQEGARLIITVD 158 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 G +S V+ AR G V++ DHH + A A++NPN D L GV F Sbjct: 159 CGANSPDAVKAARLAGADVVILDHHQMSEIHQEAIALVNPNRPDDFSEQGYLCAAGVVFV 218 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 + + LR + + +P+L +LDLVAL T+ DVVPL NR +G+ R+ Sbjct: 219 TLAWVHHLLRKKQF----EGPLPDLLSMLDLVALATICDVVPLQGVNRAFVVKGLHVARS 274 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 GI AL +VA R + L + LGF LGPR+NA GR+ D ++G LL C+N EA Sbjct: 275 MH-NLGIAALTKVA-RIGEPLNSFHLGFLLGPRINAGGRIGDQALGARLLSCENKDEADR 332 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 +A +LD LNQ R+E+E+ +A + L + ++ P L + H EWH G++GILASR+ Sbjct: 333 IAEQLDQLNQERQEMEKIQLAQAESYIASLYQDQEP-PLSLVISHQEWHPGIIGILASRL 391 Query: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 KERF PV A A DG GSGRSI G+ + + TL ++ K GGH+MAAG+++ Sbjct: 392 KERFFCPVFAIALKEDGNGVGSGRSIHGIDLGALVREAVTL--NLLEKGGGHSMAAGITI 449 Query: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 + K + F++ E V+ + + + DG LS + + +LL AGP+G Sbjct: 450 QSTKIEFFRKWLEEKVSVMVSQLHAKKSLRIDGSLSASGANQALFELLEKAGPFGTGNAT 509 Query: 498 PLF--DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN-VDTAL---WPDNGVREVQ 551 P+F H RL+ VG+ HL++++ G G L GIAF V TAL N + Sbjct: 510 PVFVLPSH-RLMNLSEVGKGHLRLIISN-GEGKKLQGIAFRAVGTALGDFLSRNIGEMIH 567 Query: 552 LAYKLDINEFRGNRSLQI-IID 572 LA L +N + G + Q+ +ID Sbjct: 568 LAGHLSLNYWNGTINPQLRVID 589 >UniRef50_C7NEA4 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Fusobacteriaceae RepID=C7NEA4_LEPBD Length = 997 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 183/583 (31%), Positives = 297/583 (50%), Gaps = 48/583 (8%) Query: 14 ETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFR 69 E +L + + + ++ SRG+ + +E+ + L Q L +EK V + A + Sbjct: 47 ENTNLSSVIDNDILKILYSRGITTEKEIREFLNPKLGNIQNPYGLQDMEKTVLEIEKAIK 106 Query: 70 EGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARG 129 E I + GD+D DG TST++ +A++ LG N++Y +P R ++GYGL+ E + + G Sbjct: 107 EQKNIWIYGDYDVDGITSTSILYMALKELGAENVNYYIPIR-DEGYGLNNEALKKIKKSG 165 Query: 130 AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH-LPGDTLPAAEAIINPNLRDCNFPSKS 188 A L++TVD GI++ VE A S+ +P+I+TDHH L GD +P A ++NP + +F + Sbjct: 166 ADLVITVDCGITAFPEVEFANSINLPIIITDHHNLHGDKVPDAITVVNPKRPENDFSFEF 225 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 LAGVG F ++L L ER + LDLVA+GTVAD+VPL NRILT Sbjct: 226 LAGVGTIFMVILCLY----------ERIGKKAKAYKYLDLVAIGTVADIVPLMEENRILT 275 Query: 249 WQG---MSRIRAGKCRPGIKALLEVANRD---AQKLAASDLGFALGPRLNAAGRLDDMSV 302 G +SR + R + L + N D + + D+GF + P NAAGRL D + Sbjct: 276 KFGLEQLSRSKNKGLRFLLYKLFSIQNSDFNEKTEYNSYDVGFIIAPVFNAAGRLKDAKM 335 Query: 303 GVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK-LERSRDTLPGGLAMY 361 V LL+ DN E ++ EL N RKE +Q E + EK +E S + Y Sbjct: 336 VVKLLISDNDREIEIIVKELINKNFERKE----LQNEIVEKVEKHIEESDLKEDYVIVDY 391 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYP 420 PE+H GV+GI AS+I +++++P I D G GS RSI ++ +AL+ + P Sbjct: 392 SPEYHHGVIGIAASKIVDKYYKPAIIIEVKEDEGIAVGSCRSIGNFNILEALQSM----P 447 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 + +KFGGH+ AAG ++ +LF+++ + L + D + +++ E Sbjct: 448 ELFVKFGGHSGAAGFTIGIKNLELFKKKINKFAKTKLKEEDFVKIIEIDKQIPIQKISYE 507 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQQ-RLVGERHLKVMVEPVGGGPLLDGIAFNVDT 539 Q++ P+G P P F + L + + +GE +M + G FN + Sbjct: 508 FFQIIELLKPFGFGNPMPTFRTNNVLFENIKFIGENKNHIMFDIKQKG------FFNRN- 560 Query: 540 ALWPDNG--VREVQ------LAYKLDINEFRGNRSLQIIIDNI 574 A+W ++G +E+ + YKL F+ ++ I+++ Sbjct: 561 AVWFNSGEYFKELNENLFYDIVYKLKTEMFQDRYYTKVYIEDV 603 >UniRef50_C7H6M6 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Ruminococcaceae RepID=C7H6M6_9FIRM Length = 713 Score = 265 bits (677), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 175/480 (36%), Positives = 259/480 (53%), Gaps = 25/480 (5%) Query: 25 LLRRLYASRGVRSAQELERSVKG---MLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 LL + A+RG+ E + G + L+ ++KA + +A I+V GD+D Sbjct: 63 LLAGILAARGITDPAEALTLLSGEEELTDPMLLTDMDKACARILDAIDREETIVVFGDYD 122 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 DG T+TAL ++ +G +N+ ++P+R DGYGLS + H +G QLIVTVDNGIS Sbjct: 123 VDGVTATALLYQHLKGMG-ANVKCMLPSREGDGYGLSKNAIQSIHDKGCQLIVTVDNGIS 181 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLA 201 + E A SLG+ +IVTDHHLP DTLP A A+++P D P K L G GVAF L A Sbjct: 182 ALEEAEFAASLGVDLIVTDHHLPHDTLPKAVAVVDPRRADDTSPFKGLCGAGVAFKLCAA 241 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 261 L G E + DL A+GTVADV+PL NR L G+ ++ R Sbjct: 242 L------DGCPPEEMLDYCG-----DLAAVGTVADVMPLTGENRTLVKAGLHLLQHSD-R 289 Query: 262 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 321 PG+ ALL+ + + A ++ +A+ PR+NAAGR+D + L+LC++ A LA++ Sbjct: 290 PGLLALLDEVGLGGKPVTAENVSYAIAPRINAAGRMDSAVTALQLVLCEDEERAAELAHK 349 Query: 322 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM-YHPEWHQGVVGILASRIKER 380 L+ +N R+E E + A +LE L + + + +WH GV+GI+ASR+ E+ Sbjct: 350 LNEINAARQETEGEIAKAAQA---QLEAEPAILEDRVILIWGRDWHPGVIGIVASRLVEK 406 Query: 381 FHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEED 440 RPVI + G KGSGRS+QG ++ + + L +L+FGGHAMAAGLS+ E+ Sbjct: 407 TGRPVIVVSIDEHGEGKGSGRSVQGFNLHACIASCEDL----LLRFGGHAMAAGLSVREE 462 Query: 441 KFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF 500 ++R E P L+ + D + +T+E + L P+G P P+F Sbjct: 463 NLPELRRRLNEWAAREC-PVLVTPPLECDLSIHLDRITVESVRRLDQLAPYGAENPAPVF 521 >UniRef50_B0PEB7 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEB7_9FIRM Length = 685 Score = 265 bits (676), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 185/577 (32%), Positives = 305/577 (52%), Gaps = 38/577 (6%) Query: 9 RREVDETADLPAE---LPPLLRRLYASRGVRSAQELERSVKG---MLPWQQLSGVEKAVE 62 R+ DE A A+ LPPL R+ A RG + + + R + G + L +++AV+ Sbjct: 9 RQADDEAARHAAKALGLPPLAVRILAGRGFDTQEAIRRFLTGDCALTDPMALRDMDRAVK 68 Query: 63 ILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVV 122 + A EG +I V GD+D DG ST + + S G +++ Y +P+R +GYGL+ E + Sbjct: 69 RIRRAIAEGEKIAVYGDYDCDGILSTVVLYSYLESAG-ADVCYYIPHRDREGYGLNREAL 127 Query: 123 DQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDC 182 G +L++TVDNGI++ V A S+GI V+VTDHH P D LP A A+++P+ D Sbjct: 128 QIIRDDGVRLVITVDNGITAVDEVAFAASIGIDVVVTDHHKPRDMLPQAVAVVDPHRLDD 187 Query: 183 NFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA 242 + LAG+GVAF L+ AL D G L + DL+A+ TVAD+VPL Sbjct: 188 ESGCEYLAGIGVAFKLICALEG---DDGDL--------MLEQYGDLIAVATVADIVPLIG 236 Query: 243 NNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSV 302 NR + +G+ +++ G+ AL+ V ++L+ ++ + + PR+N+AGR D + Sbjct: 237 ENRTIVRRGLESLQSTD-NEGLAALIRVCGMADRQLSCENIAYGIVPRINSAGRFDCVDN 295 Query: 303 GVALLL--CDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 V L CD E LA ++++LN+ R+ +E + + + +L+ + L + + Sbjct: 296 AVELFSGGCD---EPETLAGDINSLNEKRRAVEDQIVRQIMN---QLDAQTEELGRRIIV 349 Query: 361 YHPE-WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 H E WH GVVGI+ASR+ ERF +P I F+ GD +GS RSI+G + DA++ L Sbjct: 350 IHGEGWHHGVVGIVASRMVERFGKPCIVFSVEGD-VARGSARSIEGFSIIDAIDACSRL- 407 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 ++++GGH AAGL++ K F+ + P + Q + D +SP ++T+ Sbjct: 408 ---LIRYGGHNQAAGLTVSMANLKAFKNAINDWAASHY-PDMPQQTINIDCAISPRQLTV 463 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ-RLVGE-RHLKVMVEPVGGGPLLDGIAFNV 537 E L P+G P+F +LQ +G+ +H+++ G G + + F + Sbjct: 464 EEIAPLSMLEPFGSGNEPPVFTIRSCVLQGIYAIGDGKHVRLRF--CGDGCVFYAVYFGM 521 Query: 538 DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 A +P V LA +D+NE+ G + + + + +I Sbjct: 522 TQANFPYTIGETVDLAVTVDVNEWNGEQRVSVKVRDI 558 >UniRef50_B9E712 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E712_MACCJ Length = 753 Score = 264 bits (675), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 184/533 (34%), Positives = 279/533 (52%), Gaps = 51/533 (9%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 + + KAV+ + A I+V GD+DADG TS + V +++S+G + + +PNRF + Sbjct: 59 MHDMSKAVKRIQTAIDNNEMILVYGDYDADGVTSVTVLVNSLKSIGAK-VGWYIPNRFTE 117 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG + + +AH G LI+TVDNGI H V A LGI VI+TDHH G TLP A A Sbjct: 118 GYGPNEQAFREAHDAGISLIITVDNGIQGHHEVNVANELGIDVIITDHHEIGQTLPDAYA 177 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 I++P D ++P LAGVGV++ L AL G +E LL VA+GT Sbjct: 178 ILHPMHPDGSYPFHHLAGVGVSYKLACALN------GQMNEH---------LLGFVAIGT 222 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 ++D+V L NR L +G+ + G+KALL+ A+ + + + +GF +GPRLNA Sbjct: 223 ISDLVSLTGENRALVKRGLKALNV-DTPIGLKALLKQASFNGE-ITEETVGFIIGPRLNA 280 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 GRLDD + LL DN EA ++ ++D N RKEI + +AL E+ + + Sbjct: 281 VGRLDDARLACELLQIDNEDEAEWMSEQVDQFNIERKEIVSSITEQALIDVEEKIANGNR 340 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDAL 412 + + W++GV+GI+ASRI E++H P I D G KGS RSI + M D+L Sbjct: 341 F---IVVAKEGWNEGVLGIVASRITEQYHLPAIVLNIDYDKGYAKGSARSIAQVSMYDSL 397 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 E L + KFGGH MAAG++L + + +Q + +D ++Q E+ D + Sbjct: 398 EETRNL----ITKFGGHHMAAGMTLPIENIERLEQALNNHLDTLIDGEIIQ-EIEIDAAV 452 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGER--HLKVMVEPVGGGPL 529 +++T++ + P+G F PL + +L + +G+ HLK+ V+ Sbjct: 453 EMSDITIKNINDMDKLRPFGTDFSAPLLSLMNAKLTDVKQIGQNQAHLKMTVQ------- 505 Query: 530 LDGIAFNVDTALWPDNGVR--------EVQLAYKLDINEFRGNRSLQIIIDNI 574 N AL + G R +V LA L +NE+ GN Q+I+ +I Sbjct: 506 ------NTLNALMWNEGARISGLPVGSQVNLAGTLQLNEWNGNVQPQMIVRHI 552 >UniRef50_C6LAA7 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Clostridiales RepID=C6LAA7_9FIRM Length = 598 Score = 264 bits (675), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 191/569 (33%), Positives = 301/569 (52%), Gaps = 48/569 (8%) Query: 28 RLYASRGVRSAQELERSVKGML----PWQQLSGVEKAVEILYNAFREGTRIIVVGDFDAD 83 RL +R V +E + G L Q+ +KA +L + +I ++GD+D D Sbjct: 49 RLIRNRDVVGDAAIEEYLNGSLLNLHSAHQMKDCDKAAALLADKIDAQKKIRIIGDYDID 108 Query: 84 GATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSH 143 G +T + A++ G +N+DY +P+R DGYGL+ ++D A G I+T DNGI++ Sbjct: 109 GVCATCILYRALQLCG-ANVDYDLPDRILDGYGLNRNLIDLAGDEGVDTILTCDNGIAAV 167 Query: 144 AGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALR 203 V +ARSLG+ VIVTDHH PG+ LP A+A++NP+ + C +P K+L G VA+ L+ L Sbjct: 168 EEVAYARSLGMTVIVTDHHEPGEVLPEADALVNPHQKSCPYPYKNLCGAAVAYKLVTVL- 226 Query: 204 TFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPG 263 + I +L++L TV DV+ L NRIL +G+ ++ + PG Sbjct: 227 --------CEAMGIPQDESEKLIELAGFATVGDVMDLTGENRILVKEGLLQLNHTE-NPG 277 Query: 264 IKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELD 323 ++AL+ V N +++ + +GF LGP LNA GRLD + LLL + EA +LA EL Sbjct: 278 LQALIRVNNLQDKEITSYHIGFVLGPCLNAGGRLDTAKKSLELLLAQSEAEATLLAEELL 337 Query: 324 ALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHR 383 LN+ RK + +A+ L E D + L +Y P+ H+ + GI+A R++ER++R Sbjct: 338 ELNERRKAMTLEGYEQAVELIENGPMRDDKV---LVVYLPDCHESLAGIIAGRLRERYYR 394 Query: 384 PVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFK 443 P I G+ +KGSGRSI+ M L++ L+ LKFGGH MAAG SLE++ Sbjct: 395 PAIVLTQ-GESAVKGSGRSIESYSMFQELQKCADLF----LKFGGHPMAAGCSLEKENVG 449 Query: 444 LFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DG 502 ++R T L L ++V D P+ +T + + L P+G+ +P+F + Sbjct: 450 ELRRRLNAQTT--LTQEDLTEKIVIDVPMPLGYITERLIEELSCLEPFGKGNSKPVFAEK 507 Query: 503 HFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALWPD---------------N 545 + +L R VG+ R +++ V G ++D + F D L+ + Sbjct: 508 NLDILSARAVGQSGRVVRLRVAN-AAGTVMDAVYFG-DATLFREYVEEKYGRTETEKLFQ 565 Query: 546 GVRE-VQLA--YKLDINEFRGNRSLQIII 571 G R VQL+ Y I+E+ G RS+QI++ Sbjct: 566 GRRNAVQLSVIYYPSIHEYNGLRSIQIVV 594 >UniRef50_Q1GEL8 Single-stranded-DNA-specific exonuclease RecJ n=45 Tax=Alphaproteobacteria RepID=Q1GEL8_SILST Length = 603 Score = 264 bits (675), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 199/564 (35%), Positives = 301/564 (53%), Gaps = 34/564 (6%) Query: 22 LPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 LPP + ++ A RGV + + L +K +LP +++ +E A A RI + Sbjct: 58 LPPAVCQVLARRGVPAHEATGFLTPQLKDLLPDPRRMKDMETAAARFLQAVERRERIAIF 117 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 D+D DG +S AL ++ +R +G Y +P+R ++GYG + + A AR LI+ VD Sbjct: 118 ADYDVDGGSSAALLLVYLRQMGQQATLY-IPDRIDEGYGPNDAAM-AALARDHDLIICVD 175 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 G SH + A+ G V+V DHHL G+TLP A++NPN +D + GV F Sbjct: 176 CGTLSHGPIAAAK--GADVVVLDHHLGGETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFL 233 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 +++ +R RD+G A P+L +LDLVAL TVADV PL NR L QG+ ++ Sbjct: 234 MLVEVRRQARDKGLG-----AGPDLMAMLDLVALATVADVAPLIGANRALVRQGL-KVMG 287 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 + RPG+ AL +V+ DA + LGF LGPR+NA GR+ +G LL D+ EA Sbjct: 288 RRQRPGLVALADVSRMDAAP-STYHLGFLLGPRVNAGGRIGKADLGARLLSTDDPHEAAA 346 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE-WHQGVVGILASR 376 L+ LD LN R++IE ++ AL E R D L E WH GVVGI+ASR Sbjct: 347 LSERLDQLNTERRDIENAVRAAALEQAEA--RGFDAP---LVWAAGEGWHPGVVGIVASR 401 Query: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 +KE RP + G+ KGSGRS+ G+ + +++++ G++LK GGH MAAGL+ Sbjct: 402 LKEATGRPAVVIGLDGE-EGKGSGRSVSGIDLGASIQKV--AMEGLLLKGGGHKMAAGLT 458 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 + + + R EL+ + L ++ DG L P ++E+ + + AGP+G P Sbjct: 459 VARGQLEPAMARLAELLDKQGAGDLGPADLKLDGMLMPGAASVELIEQIEQAGPFGAGAP 518 Query: 497 EPLF---DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV-DTALWP---DNGVRE 549 P + D R ++ VGE HLKV GG +D IAF DT L P ++G Sbjct: 519 APRYGFPDVAVRFAKR--VGESHLKVSFTDGMGGN-IDAIAFGAFDTNLGPRLLEHGGAR 575 Query: 550 VQLAYKLDINEFRGNRSLQIIIDN 573 ++ +L++N + G +S Q+ +++ Sbjct: 576 FHVSGRLEVNTWGGRQSAQLRLED 599 >UniRef50_C5NYP0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYP0_9BACL Length = 753 Score = 264 bits (674), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 176/519 (33%), Positives = 268/519 (51%), Gaps = 34/519 (6%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 + ++KAV+ + A +I+V GD+DADG TST L V + S+G +N+ +PNRFE+ Sbjct: 61 MHDMQKAVDRINEAIENEEKILVYGDYDADGITSTVLLVETLISMG-ANVSSYIPNRFEE 119 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG + E + G LI+TVDNGI+ V+ A LG VIVTDHH DT+P A A Sbjct: 120 GYGPNKEAFTKIIDSGITLIITVDNGIAGVEEVDLANELGCDVIVTDHHKIQDTIPNAYA 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 II+P + N+P K LAGVGVAF L AL D LLDLVA+GT Sbjct: 180 IIHPEHPEGNYPFKKLAGVGVAFKLAHALLEIFPDF---------------LLDLVAIGT 224 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +AD+V + NRI QG+ I R G+K LLE++ D K+ +GF + P+LN+ Sbjct: 225 IADMVSITDENRIFVKQGLELINEDP-RIGLKMLLELSGIDT-KIDEQTVGFYIAPKLNS 282 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 GR+D +G+ L+ + AR LA +++ N RK++ + + + ++ E E+ + Sbjct: 283 IGRMDSAKLGLTFLMAEEPVTARALAEQIEQYNIQRKQVTEDIVKDVISKIENSEKKQ-- 340 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 + M E+H+GV+GI+AS I E++ +PV +G LKGS RSI ++ A+ Sbjct: 341 --KNVIMVSGEYHEGVLGIVASNIVEKYQKPVFIMNEK-EGVLKGSARSIFDFNIYVAMN 397 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 ++ L+ L FGGH +AAG S E+ F+ ++ E+ + L+ D S Sbjct: 398 KISDLF----LAFGGHTLAAGFSFEKSNFEKIEEFLDNEFEEFKQNNNLKANKNIDIVTS 453 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEP--LFDGHFRLLQQRLVGER-HLKVMV-EPVGGGPL 529 +++ + L P+G F +P L + L + E+ +L++ + + VG Sbjct: 454 LEDISYQFLNSLDALKPYGMDFEKPTVLIENAMVLNKAYFGSEKQYLRLTIADEVGN--- 510 Query: 530 LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQ 568 LD I F + L +D N F G LQ Sbjct: 511 LDCITFKDSVTFDKVEKNDIIDLVCNIDKNNFNGRTKLQ 549 >UniRef50_B7AQW7 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AQW7_9BACE Length = 577 Score = 264 bits (674), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 186/574 (32%), Positives = 303/574 (52%), Gaps = 47/574 (8%) Query: 25 LLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREGTRIIVVGDF 80 ++ R+ +R V + E + G L + G+ +AV ++ NA +G RI ++GD+ Sbjct: 25 VIARIIRNRDVTEDSQYEEYLYGGLESMHDPVLMKGISEAVAVIKNAIADGKRIRIIGDY 84 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 D DG S + + G ++ DY+VP+R DGYG++ ++ A A G +I+T DNGI Sbjct: 85 DIDGVCSICILHKGLIMAG-ADADYVVPDRITDGYGINENLIRNAIADGIDMIITCDNGI 143 Query: 141 SSHAGVEHARSLGIPVIVTDHH-LP----GD-----TLPAAEAIINPNLRDCNFPSKSLA 190 +++ + +A+ GI +IVTDHH +P D +P A+ +++P DC +P K L Sbjct: 144 AAYDAIAYAKENGITIIVTDHHDVPFRENADGTREYIIPPADVVVDPKQSDCGYPFKELC 203 Query: 191 GVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQ 250 G VA+ ++ L F L LL+L A+ TV D+V L NR + Q Sbjct: 204 GALVAWKMIQHLLGQKPKDSEF---------LMYLLELGAIATVGDIVSLQGENRTIVKQ 254 Query: 251 GMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCD 310 G+ I AG G+K L++V A +GF +GP LNA+GRLD + LL D Sbjct: 255 GLRHIHAGTRNVGLKTLMDVCGVAEADFNAYHIGFVVGPCLNASGRLDSAVKAIRLLETD 314 Query: 311 NIGEARVLANELDALNQTRKEI-EQGMQIEALTLCEKLERSR-DTLPGGLAMYHPEWHQG 368 + +A+ LA EL LN RK++ E+G++ C +ER + +P + ++ H+ Sbjct: 315 DEKQAQALAAELKLLNDERKDMTERGVE----NACNTVEREYGNNIPQIIVVHLDNCHES 370 Query: 369 VVGILASRIKERFHRPVIAFAPA--GDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKF 426 V GI+A R++E+++RP I F + G KGSGRSI+ M + R + M+ KF Sbjct: 371 VAGIIAGRVREKYYRPCIIFTDSIGEHGIYKGSGRSIEPYDMFAGVNR----FRDMLEKF 426 Query: 427 GGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS--DGPLSPAEMTMEVAQL 484 GGH MAAG+S+ ++F + F E + +D S + V+ D P+ +T EV + Sbjct: 427 GGHHMAAGMSIRSERF----EEFRECLVNSMDMSDEELTPVTWIDVPMPLDYVTEEVTEQ 482 Query: 485 LRDAGPWGQMFPEPLF-DGHFRLLQQRLVGE-RHLKVMVEPVGGGPLLDGIAFNVDTALW 542 L+ P+G+ P+P+F D + ++++ ++G+ R++ M+ G L+ + F+V T Sbjct: 483 LQLLEPFGKDNPKPVFADKNLTVVRKNIIGKNRNVLKMILQTVNGRRLEAVKFHV-TQEE 541 Query: 543 PDNGVRE--VQLAYKLDINEFRGNRSLQIIIDNI 574 DN + + Y DIN F GN +LQ+II I Sbjct: 542 ADNMKTGDIISIVYYPDINTFNGNSTLQMIISEI 575 >UniRef50_C0EW92 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0EW92_9FIRM Length = 591 Score = 264 bits (674), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 176/587 (29%), Positives = 292/587 (49%), Gaps = 58/587 (9%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLP----WQQLSGVEKAVEILYNAFREGTRIIVV 77 + P+ RL +R + + +E++R + G L L +K EI+ G +I ++ Sbjct: 22 ISPVTARLMRNRSLTTVREMQRYLYGSLSDLYDSHLLKDADKGAEIIKEKIETGKKIRII 81 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 D+D DG +S + ++ G +++DY +P+R EDGYG++ ++++A G I+T D Sbjct: 82 SDYDVDGVSSNYILYQGLKRCG-ADVDYKIPDRVEDGYGINEHLIEKAAEDGIDTIITCD 140 Query: 138 NGISSHAGVEHARSLGIPVIVTDHH-LP---------GDTLPAAEAIINPNLRDCNFPSK 187 NGI++ + + SLG+ +IVTDHH +P LP+A A+INP +DC +P + Sbjct: 141 NGIAAAEQIAYGNSLGLTLIVTDHHDIPFQRQEDGSISYNLPSAAAVINPKQKDCPYPFE 200 Query: 188 SLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRIL 247 ++ G V + + L D D R + L++ A+ TV DV+PL NRI+ Sbjct: 201 NICGAVVVYKFI----QVLYDLFGIDRRESEV-----FLEIAAMATVCDVMPLCDENRII 251 Query: 248 TWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALL 307 +G+ RI+ G++AL+E + + +K+++ GF LGP +NA+GRL + LL Sbjct: 252 VKEGLRRIQHTNI-TGLQALIEANHLEEKKISSYHFGFILGPCINASGRLTSAKDALELL 310 Query: 308 LCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQ 367 LC++ R A L LN RKE+ A E + D + L +Y P H+ Sbjct: 311 LCEDKELCRQKAEALTQLNAERKEMTANGVKAAKEYLESTGHANDKV---LVVYLPNCHE 367 Query: 368 GVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 + GI+A R+KE +H+PV +G LKGSGRSI+ HM + ++ + KFG Sbjct: 368 SIAGIIAGRMKEHYHKPVFVITRTKEG-LKGSGRSIEAYHMYKEMNKIKECFD----KFG 422 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP-AEMTMEVAQLLR 486 GH MAAG S++ED+ + F+++ T D + + P+S +E + +LL Sbjct: 423 GHPMAAGFSMQEDRLEEFREKLNANATLTEDDFAEKVHIDVALPISYLSESLINEFELLE 482 Query: 487 DAGPWGQMFPEPLF-DGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALWP 543 P+G +PLF + R++G R LK+ + G +D + F Sbjct: 483 ---PFGNENTKPLFAQKDLYIKGMRVLGTTGRCLKLFLSDANGTS-IDAMYFGESDVFLE 538 Query: 544 D----NGVREVQ-------------LAYKLDINEFRGNRSLQIIIDN 573 + G E Q + Y +NE+RG +++QI+I N Sbjct: 539 ELISFCGKEEAQRIQKGLSHHIWMDVTYYPQVNEWRGQKNIQIVIQN 585 >UniRef50_B1C9H3 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9H3_9FIRM Length = 793 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 162/526 (30%), Positives = 267/526 (50%), Gaps = 27/526 (5%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 ++K +E L R ++++ D+D DG TS+ + + + S N ++PNRF + Sbjct: 64 FKDMKKVMERLKEVIRNREKVVIFSDYDCDGVTSSII-LYKVLSFMKVNTKIIIPNRFTN 122 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYGLS E ++ L++T DNGI+S E + GI VI+TDHH P + LP A A Sbjct: 123 GYGLSDESMEMIIDEEPSLVITTDNGITSVEETEILKDSGIDVIITDHHTPPEVLPEAYA 182 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 IINP + N+P L G GVAF + A F + FD ++++L +GT Sbjct: 183 IINPKVEGDNYPFSELCGAGVAFKIACAAVKFF--ELDFD--------ISQILVFAMIGT 232 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +AD+V L + NR + G+ IR + G+ AL++ ++ D KL ++GF +GPR+NA Sbjct: 233 IADIVSLKSENRTIASLGLDLIRNTNNK-GLNALIKKSDLDKNKLNCGNIGFQIGPRINA 291 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGRLDD V L L ++ E +L++EL N RK+IE+ + E+ + D Sbjct: 292 AGRLDDAKKAVRLFLSEDEKEVDILSHELCEYNDQRKDIEESI----FKKSEEYIKENDL 347 Query: 354 LPGGLAM--YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 L L + Y ++++GV+G+ AS+I ++++RPV+ + + DG +K S RSI G + Sbjct: 348 LETSLILYVYGEDFNEGVMGVAASKICDKYNRPVVIMSDSEDGFIKASCRSITGFDIFKC 407 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L+ L+ KFGGH+ AAG S+E + + E + +L V D P Sbjct: 408 LDNSRELFS----KFGGHSAAAGFSIERENLDRLIEETNEYARKRKIENLFYKRVYYDTP 463 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGE--RHLKVMVEPVGGGP 528 P+ + ++ + L P+G + +L R +G+ HLK V + G Sbjct: 464 AIPSNLNVKTSLELEKFAPFGIGNSRSILCLRDVKLTNVRAIGKDGTHLKFSV--LYNGN 521 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 D I F++ L + + + + + +N ++G LQ I ++ Sbjct: 522 YYDAIGFSMGHYLREYDFTKSFDIVFTMSVNSYKGREKLQFEIKDM 567 >UniRef50_O32044 Single-stranded-DNA-specific exonuclease recJ n=101 Tax=Bacillales RepID=RECJ_BACSU Length = 786 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 183/589 (31%), Positives = 306/589 (51%), Gaps = 51/589 (8%) Query: 2 KQQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLS 55 K + +++R + D+ L +L PL+ L RG +A+ L ++ Sbjct: 5 KMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFYDPFEMK 64 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 G+++A + + A + +I++ GD+DADG TST++ + ++ L + +D+ +P+RF++GY Sbjct: 65 GMKEAADRIKQAISQQEKIMIYGDYDADGVTSTSVMLHTLQKL-SAQVDFYIPDRFKEGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G + + RG LI+TVD GI++ + A+ LG+ VI+TDHH PG LP AI+ Sbjct: 124 GPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKELGLDVIITDHHEPGPELPDVRAIV 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P C +P K LAGVGVAF L AL L D ELLDL A+GT+A Sbjct: 184 HPKQPGCTYPFKELAGVGVAFKLAHALLGELPD---------------ELLDLAAIGTIA 228 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL NR++ G+ R+R R G+K L++++ D + +GF L PRLNA G Sbjct: 229 DLVPLHDENRLIATLGLERLRRTN-RLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK--LERSRDT 353 R++ V LL+ ++ EA LA E+D LN+ R+++ M EA+ + E+ L+++ Sbjct: 288 RIEQADPAVHLLMSEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIEMVEQQGLDQT--- 344 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRDAL 412 + + W+ GVVGI+AS++ +RF+RP I G KGS RSI+G ++ ++L Sbjct: 345 ---AIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFESL 401 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS---- 468 + P FGGH MAAG++L+ + + R E+ D +L + + + Sbjct: 402 SECRDILP----HFGGHPMAAGMTLKAEDVPDLRSRLNEIA----DNTLTEEDFIPVQEV 453 Query: 469 DGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ-RLVGERHLKVMVEPVGGG 527 D ++T+E + P+G + P+P +L+ R +G V + Sbjct: 454 DLVCGVEDITVESIAEMNMLSPFGMLNPKPHVLVENAVLEDVRKIGANKTHVKMTIRNES 513 Query: 528 PLLDGIAFN---VDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 LD + FN + + P G R + + ++ INE+ + Q++I + Sbjct: 514 SQLDCVGFNKGELQEGIVP--GSR-ISIVGEMSINEWNNRKKPQLMIKD 559 >UniRef50_Q3MAJ6 Exonuclease RecJ n=6 Tax=Cyanobacteria RepID=Q3MAJ6_ANAVT Length = 730 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 189/619 (30%), Positives = 313/619 (50%), Gaps = 73/619 (11%) Query: 4 QIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELE-----RSVKGMLPWQQLSGVE 58 QI L++ ++ + A L P++ +L +RG+ + ++ + S+ P + + Sbjct: 22 QIHLQKTDLAQKLADAANLSPIVCQLLINRGIETPEQAQAFLEPESLNLPSPLTEFPDLA 81 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 +VE+L A ++I + GD+DADG TSTAL + ++RSLG + +DY +P+R +GYG++ Sbjct: 82 MSVELLQEAIASQSKIAICGDYDADGMTSTALLLRSLRSLG-AQVDYAIPSRMHEGYGIN 140 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 +V++ H+ G +LI+TVDNGIS+ + A+ LG+ VI+TDHH LP A+AI+NP Sbjct: 141 KRIVEEFHSEGVKLILTVDNGISAFEPIARAKELGLNVIITDHHDIPQKLPPADAILNPK 200 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFL-RDQGWFDERNIAIPNLAELLDLVALGTVADV 237 L + P + +AGVGVA+ L ++L L + +G + +L L LGT+AD+ Sbjct: 201 LIAESSPYRGVAGVGVAYILAVSLAQKLDKTKGL----------IQPMLALFTLGTIADL 250 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVA-------------------------- 271 PL NR +G+ + + PG++AL++VA Sbjct: 251 APLSGVNRRWVKRGLKLLPKSQL-PGVQALIQVAGVQAINSKFKIPFGNAKGEQNSKLIN 309 Query: 272 ---NRD--------------AQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 N+D Q L D+GF LGPR+NA GR+ D + LL D+ G Sbjct: 310 NDSNKDLTYGVPNPQSPVPNPQSLKPEDIGFRLGPRINAVGRIGDPLTVIELLTTDDEGL 369 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILA 374 A A + + N +R+++ + ++ +A+ E L + L + P WH GV+GI+A Sbjct: 370 ALERAMQCEQANTSRQQMCEEIEQQAIAHVEDLYATSLQQDRVLVVIQPNWHHGVIGIVA 429 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 SR+ ER+ PV + ++GS RSI ++ +ALE L + K+GGH A G Sbjct: 430 SRLVERYGVPVFIGTYEDEELIRGSARSIPEFNVFEALEYCHDL----LGKYGGHKAAGG 485 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 S + + R E + L P L+ + D + ++ E+ Q L P G Sbjct: 486 FSFPATNLQKLRSRLSEFANQCLQPQHLKPLLQIDVEANFNQIHQELYQQLNSLHPCGID 545 Query: 495 FPEPLF-DGHFRLLQQRLVGERHLKV-MVEPVGGGPLLDGIAFNVDTALWPDNG--VREV 550 P+P+F + ++++Q++VG+ H+KV + + + G P F W D + Sbjct: 546 NPDPVFWTPNVQVVEQQIVGKGHIKVTLSQTIEGQPY----QFKAIAWRWRDYYPLPPRL 601 Query: 551 QLAYKLDINEFRGNRSLQI 569 +AYKL N F GN SL++ Sbjct: 602 DIAYKLRENNFNGNTSLEL 620 >UniRef50_C2M9T5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9T5_9PORP Length = 593 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 183/579 (31%), Positives = 294/579 (50%), Gaps = 48/579 (8%) Query: 22 LPPLLRRLYASRGVRSAQELER----SVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 +P + RL RG+R+ E +R S++ + + ++ AV+ L A I++ Sbjct: 27 IPAVAGRLLYRRGIRTEAEAQRFFHPSLEDLHDPFLMQDMDLAVKRLNKALGRKEHIMIY 86 Query: 78 GDFDADGATSTALSVLAMRSLGCSN--IDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVT 135 GD+D DG T+ +L +RS GCS + Y +P R ++GYG+S VD AH GA LI+ Sbjct: 87 GDYDVDGTTAVSLIYKYLRSAGCSEHLLSYYIPGRDDEGYGVSYRGVDHAHEIGATLIIV 146 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVA 195 VD GI + + +A++LGI I+ DHH P D LP A A+++P DC++P + L G GVA Sbjct: 147 VDCGIKAINEIAYAKTLGIDFIICDHHHPDDQLPDAAAVLDPKRPDCHYPFEELCGCGVA 206 Query: 196 FYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 F M A F D G+ +L +LLDLVA+ AD+V + NRIL G+ ++ Sbjct: 207 FKFMQA---FGMDNGF------PSASLFKLLDLVAVSIAADLVSVMDENRILAHYGLRQL 257 Query: 256 RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 G+K +++ + +K+ +D+ + +GPR+NA+GR+ + V LLL ++ Sbjct: 258 NRNPSM-GLKGIIKTCGLEGRKITMADIIYKIGPRINASGRMMNGREAVDLLLSNDAKTT 316 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCE-KLERSRDTLPGGLAMYHPEWHQGVVGILA 374 ++ +D N R+E+++ EA+ L + E + + + +Y P+WH+G++GI+A Sbjct: 317 ARMSELIDEYNVRRRELDRSTTDEAMQLLQVNPELAHQPI---VVLYQPDWHKGIIGIVA 373 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 SR+ E +RP I D + GS RS+ G+ + +E L +L FGGH AAG Sbjct: 374 SRVAEYTNRPTIVLTGTSD-RIVGSARSVGGIDIYSIIEEARDL----LLNFGGHTYAAG 428 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS-DGPLSPAEMTMEVAQLLRDAGPWGQ 493 L+L DK F+ + + V +D Q + D + E+T + ++ P+G Sbjct: 429 LTLLPDKLPDFRA-YIQSVNAVVDTDRAQSTPIEVDAEIELREVTQRLYTTIQRFAPYGP 487 Query: 494 MFPEPLFDGHFRLLQQ-------RLVGE--RHLKVMVEP-VGGGPLLDGIAFNVDTAL-- 541 +PLF + QQ + VG H KV P +G GIAFN A Sbjct: 488 DNYQPLF-----VTQQLYDGGGSKAVGRNGEHFKVDAIPSLGSRKHCPGIAFNQAPAFRF 542 Query: 542 ----WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 L Y++D N F G SLQ+++ ++ P Sbjct: 543 IKKSSAGRASAPFALVYQIDENHFNGVVSLQLLVKDVKP 581 >UniRef50_C9LKW7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKW7_9FIRM Length = 667 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 190/575 (33%), Positives = 305/575 (53%), Gaps = 53/575 (9%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIV 76 +P R+ RG+ + ++L + L P+ + G+++AV + A +I++ Sbjct: 32 IPEGTARIMMRRGISTEEKLTHFLYDTLDNLSDPFL-MKGMQQAVRRIIQAIDLKEKIVI 90 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+D DG TST++ V +R LG +++++ +P R E+GYGL+ + +++ G L++TV Sbjct: 91 YGDYDVDGITSTSICVRCLRKLG-ADVNFYIPLREEEGYGLNRDAINKLSKEGVSLLITV 149 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D GISS V A + +I+TDHH P LP A++NP+ DC +P K LAG GVAF Sbjct: 150 DCGISSADLVAEAPQ-SLDIIITDHHQPPKVLPDCVAVLNPHQEDCPYPYKELAGCGVAF 208 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L + L ++ + E ++LVALGT+ADVV L NRIL +GM+R Sbjct: 209 TLCRGIYKELYNEDY-----------KENIELVALGTIADVVSLTGENRILVKEGMARFL 257 Query: 257 AGKCRPGIKALLEVA---NRDAQKLAASD-LGFALGPRLNAAGRLDDMSVGVALLLCDNI 312 + G+ ALL + N D +++ +D + F L PRLNAAGR+ GV L+ ++ Sbjct: 258 LTPIK-GLSALLRITGLVNEDTKEILHADYISFGLAPRLNAAGRITHAKYGVELMTTESG 316 Query: 313 GEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGI 372 EA LA L N R+ IE+ + EAL +L+ D + L + +WH GV+GI Sbjct: 317 EEAEALAQILCDTNIERQHIEREIYEEALQRIAELQIQDDLV---LVIDGKDWHPGVIGI 373 Query: 373 LASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMA 432 +ASRI E +HRPV+ +G KGS RSI ++ +ALE++ G ++++GGH MA Sbjct: 374 VASRILELYHRPVLVIT-VRNGVGKGSCRSISAFNIHEALEKM----AGFLIQYGGHKMA 428 Query: 433 AGLSLEEDKFKLFQQRFGELVTEWL--DPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGP 490 AG S+ ++ F++R + + D + E+ PL E+ +E + L P Sbjct: 429 AGFSIPAERISEFRKRINDYAKGIITVDDRIPVLELEESLPLD--EVNIEFIRSLDLLEP 486 Query: 491 WGQMFPEPLFDGHFRLLQQ--RLVGE--RHLKVMV----EPVGGGPLLDGIAFNVDTALW 542 +G P+PLF FR+ + R +G +H K + EPV + GI + D Sbjct: 487 YGSDNPKPLF-ASFRVFVETARRIGNDRKHFKCRLSQNREPVEA--IFWGIG-DKDPCCP 542 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 D V + Y+ +I+++ G +Q+I +I P+ Sbjct: 543 GDI----VDIVYEPEIHDWYGEH-VQLICKDIRPV 572 >UniRef50_Q7U6Y0 Possible single-stranded-DNA-specific exonuclease n=12 Tax=Cyanobacteria RepID=Q7U6Y0_SYNPX Length = 634 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 177/519 (34%), Positives = 271/519 (52%), Gaps = 24/519 (4%) Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +E AVE + A +G + V GD+DADG TSTAL + A+ LG + + +P+R E+GYG Sbjct: 62 LEAAVERICRACEQGEALAVCGDYDADGMTSTALLLRALIPLG-AKAEPAIPSRMEEGYG 120 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+P +VD+ H +G +L+VTVDNG+++ ++ AR+L + VIVTDHH + P A+++ Sbjct: 121 LNPAMVDRLHGQGIRLLVTVDNGVAAVEALQRARTLSMDVIVTDHHSIPEPRPWMTALLH 180 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P P + LAGVG+A+ L ++ L G D +A DL +GTVAD Sbjct: 181 PATTPEASPYRGLAGVGLAYVLASSVAERL---GRMDAIQVA-------RDLFCIGTVAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 + PL NR +G++ + +C G+ AL +A L A D+GF L PR+NA GR Sbjct: 231 MAPLTGANRRWLLEGLTTLHRSRCE-GVVALQRLAGLGETPLTAEDIGFQLAPRINAVGR 289 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L D + V LL + G+ LA D LN+ R+++ ++ EA L E + +P Sbjct: 290 LGDPVLVVDLLTESDPGKTMALARRCDDLNRQRRDLCDAIEAEATALVES--DAEGLIPP 347 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 L + WH GV+GI+A+R+ ER+HRPV A G+G L+ S R+ QG + AL Sbjct: 348 FLLLAQSHWHHGVIGIVAARLMERYHRPVALLAGDGEGLLRASARAPQGFAVDKAL---- 403 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 T ++ +FGGH A G +++ + R +L WLD V + L E Sbjct: 404 TTCADLLERFGGHPAAGGFTVKASQVHALHDRLNQLTQPWLDQEGAGRPVRPEACLKLNE 463 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 + ++ L P G P PLF ++ R + HL V ++ G +A+ Sbjct: 464 INWDLWAALETLTPHGVGHPAPLFWSRGCQVADWRTLNGGHLAVTLQQ--GTHQRRAVAW 521 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + L P V +AY+L +N +RG R LQ+ + +I Sbjct: 522 RC-SPLTPMP--ERVDVAYELKLNVWRGERRLQLELKSI 557 >UniRef50_A1VF80 Single-stranded-DNA-specific exonuclease RecJ n=10 Tax=Desulfovibrionaceae RepID=A1VF80_DESVV Length = 580 Score = 261 bits (667), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 192/543 (35%), Positives = 285/543 (52%), Gaps = 28/543 (5%) Query: 41 LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGC 100 L ++ + P ++ G+ +A ++ G V GD+D DG TSTAL + G Sbjct: 58 LSPQLRHLAPLEEWPGLAEAAGVITAGITAGMPFAVWGDYDVDGVTSTALVHDVLEFHGV 117 Query: 101 SNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTD 160 ++ + +P+R +GYGL+ E +++ A G +L++TVD GIS + AR LG+ V+V+D Sbjct: 118 -DVRHHLPDRRAEGYGLNVEWIERLAADGVRLLLTVDCGISDVVPISRARELGMTVVVSD 176 Query: 161 HHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIP 220 HHLP + LP A AI NP L C P +LAGVGVAF++M A+ L ER+ Sbjct: 177 HHLPPEVLPPAHAICNPRLACC--PCPALAGVGVAFFVMAAVNAAL------GERSGRRY 228 Query: 221 NLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRD-AQKLA 279 ++ E+LDLVALGT+ADVV L NRIL G+ +I + RPG+ AL VA + + L Sbjct: 229 DMREVLDLVALGTLADVVDLGGQNRILVKNGLLKIAEAR-RPGMAALKAVAGYNPSASLG 287 Query: 280 ASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIE 339 A + F L PR+NAAGRL + + + LL N GEA LA LDA+N R+ E + E Sbjct: 288 AGQVVFGLAPRINAAGRLGEAEMALQLLRARNHGEAAQLAQRLDAMNTDRRVEEDRILEE 347 Query: 340 ALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGS 399 A E SR G ++ +WH GV+GI+ASRI E ++RP + G+ TLKGS Sbjct: 348 AKRQAESQAASR----MGFVLHGEDWHPGVIGIVASRIVEAYYRPTLILCTEGE-TLKGS 402 Query: 400 GRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDP 459 GRS+ + L + L+ L FGGH AAG+SL+ ++RF +V + L Sbjct: 403 GRSVSEFDLHAGLSQCADLF----LGFGGHRQAAGMSLKTSALDALRERFDTVVRQALGD 458 Query: 460 SLLQGEVVSDGPLSPAEMT-MEVAQLLRDAGPWGQMFPEPLFDGH---FRLLQQRLVGER 515 + L + DG L + V + L P+G EP+F R L++ Sbjct: 459 TPLTASLKLDGDLGFEHASDFTVLKELEMLQPFGTGNAEPVFASPPLLVRGLRRFGKARE 518 Query: 516 HLKVMVEPVGGGPLLDGIAFNVDTALWPD--NGVREVQLAYKLDINEFRGNRSLQIIIDN 573 H+++ + G L A+ + + D G R ++LAY I+ + G S+ + I + Sbjct: 519 HVELELTDESCGVTLHAKAWR-QSGEFSDRLRGTR-IRLAYTPRIDRYSGAASVDLRIRD 576 Query: 574 IWP 576 P Sbjct: 577 WQP 579 >UniRef50_D2LJ47 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJ47_RHOVA Length = 609 Score = 261 bits (667), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 189/572 (33%), Positives = 293/572 (51%), Gaps = 33/572 (5%) Query: 22 LPPLLRRLYASRGV---RSAQELERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 LP ++ R+ A+RGV A L +++ + P + ++KA + + A G RI + Sbjct: 50 LPEIVGRILAARGVSLDEVADVLNPTLRALCPDPSTFTDMDKAADRIARAIETGERIAIF 109 Query: 78 GDFDADGATSTALSVLAMRSLGCSNID--YLVPNRFEDGYGLSPEVVDQAHARGAQLIVT 135 GD+D DGA+S+AL R L +D +P+R +GYG + + Q GAQLIVT Sbjct: 110 GDYDVDGASSSAL---LKRFLAWHGLDARIYIPDRITEGYGPNGPAIAQLIEDGAQLIVT 166 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVA 195 VD G +S ++ A G+ V+V DHH + LP A A++NPN +DC L GV Sbjct: 167 VDCGSTSFEALDVAAKRGVEVVVVDHHQVNEELPVAHAVVNPNRQDCLSGQGHLCAAGVT 226 Query: 196 FYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 F L +A + LR +G + + P+L LD+VAL TV DVVPL NR QG+ + Sbjct: 227 FLLCVAAQRRLRAKGAYAKS--PAPDLLGWLDIVALATVCDVVPLSGVNRAFVVQGLKVL 284 Query: 256 RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 R + PG++AL + A + + + LGF LGPR+NA GR+ D S+G LL ++ E Sbjct: 285 R-NRRNPGLRALADAAGVN-KPPSPYTLGFVLGPRINAGGRIGDASLGARLLASEDDIET 342 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 R +A LD LN+ R+EIE EA ++ + P +A P WH+G+VG+ AS Sbjct: 343 RRIAETLDRLNRERREIEIKTVEEAAAWADRTLMEDPSAPIIIA-GSPSWHKGLVGLAAS 401 Query: 376 RIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 R+ ERF RP + F+ D G GS RS+ G+ + A+ + G+ K GGH MAAG Sbjct: 402 RLTERFQRPCLIFSQDDDAGESTGSARSVSGVDIGAAVR--GAVEAGVAKKGGGHTMAAG 459 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQG----EVVSDGPLSPAEMTMEVAQLLRDAGP 490 ++++ + + LDP+ E+ DG L P T++ L AGP Sbjct: 460 ITVDTARL----HELAAFLRAALDPAYRVASAAPELAIDGVLKPRAATLDFCAQLEAAGP 515 Query: 491 WGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF-----NVDTALWPD 544 +GQ P P F R + + HL++ ++ V G + +AF + AL Sbjct: 516 YGQGNPAPRFSLASVRPTMIKEISGGHLRLALQDVDGSQ-ISAVAFRAAQTEIGAALAAG 574 Query: 545 NGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + +A +++ +E+ G ++ I+++ P Sbjct: 575 RDL-ACHVAGRIERDEWGGKSRIEFHIEDVAP 605 >UniRef50_Q03F38 Exonuclease RecJ n=3 Tax=Lactobacillales RepID=Q03F38_PEDPA Length = 773 Score = 261 bits (666), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 185/578 (32%), Positives = 302/578 (52%), Gaps = 45/578 (7%) Query: 11 EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYN 66 ++D+ A +L + ++ +RG ++ +++ + + L ++KA++ ++ Sbjct: 17 DIDQLAS-ETKLSQTMVKIMVARGFKTGEDILSFIDEDMSIVHDPMLLHDMQKALDRIFV 75 Query: 67 AFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH 126 A +I+V GD+DADG TST + + LG +N+ Y VP+RF+DGYG P + H Sbjct: 76 AIESNEKILVYGDYDADGVTSTTIMYETLDQLG-ANVQYFVPDRFKDGYG--PNLKKYQH 132 Query: 127 ---ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 G QLI+TVDNG++ + ++ A G VIVTDHH + LP A AII+P + Sbjct: 133 FINDEGVQLIITVDNGVAGNEAIKFAEDQGTNVIVTDHHEIPEVLPEAYAIIHPRHPEGA 192 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 +P L+GVGVAF + AL IP E LDL A+GT AD+V + Sbjct: 193 YPFGDLSGVGVAFKVATALLE-------------EIP--EEFLDLYAIGTTADLVSMTDE 237 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NR L G+ I R G++ L+E++ D D+GF + PR+NA GRL++ S Sbjct: 238 NRFLVKMGLEMI-PNTQRIGLQKLIEISGVDVSHFDEQDIGFTVAPRINAVGRLENASRA 296 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLER-SRDTLPGGLAMYH 362 V LL + EA +A E++ +N R+ + + EA + E SR T L + Sbjct: 297 VELLTTFDEEEATTIAQEINKINSKRQGLVSDIYTEAEEIALDDEHASRQT----LVIAG 352 Query: 363 PEWHQGVVGILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 +WHQGV+GI+ASRI ER ++P I + G+G KGSGRS+ L++ +A+ + G Sbjct: 353 HDWHQGVLGIVASRIVERTNKPTIVLSDQGGNGIYKGSGRSVAALNLFEAINPIREKCVG 412 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQG-EVVSDGPLSPAEMTME 480 FGGH MA G+++E D+ + E + ++ Q ++ D ++ E+T + Sbjct: 413 ----FGGHHMAIGVTVEADQLATLTDQL-EKAAQLVNLDFKQQPQLQIDLKVNIEELTEK 467 Query: 481 VAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGER--HLKVMVEPVGGGPLLDGIAFNV 537 + ++ GP+G P P F+ R+ + + +G+ HLK ++ G ++ IAF Sbjct: 468 LVSEMKILGPFGMNNPVPKFELEDVRVKEAKAIGKDGAHLKFTLD--DGNQNINAIAFKR 525 Query: 538 -DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + A +N + L ++ NE+RGN S+Q + D+I Sbjct: 526 GELADVLNNVANPISLVGTINTNEWRGNVSVQFMTDDI 563 >UniRef50_Q2YT94 Single-strand DNA-specific exonuclease n=60 Tax=Staphylococcus RepID=Q2YT94_STAAB Length = 757 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 180/563 (31%), Positives = 293/563 (52%), Gaps = 40/563 (7%) Query: 21 ELPPLLRRLYASRGVRSAQELERSVKGMLPWQ---QLSGVEKAVEILYNAFREGTRIIVV 77 +L P+++++ S+ + Q +E + QLS + K +E + A +I+V Sbjct: 26 KLTPIVKKILESKSIIDEQAIESIISDTDINHDALQLSDMTKTIERIKRAIANDEKILVY 85 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+DADG TST + V ++ LG + + + +PNRF +GYG + AH G LI+TVD Sbjct: 86 GDYDADGVTSTTILVTTLQLLG-AQVGWHIPNRFTEGYGPNELAFRNAHDEGITLIITVD 144 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 NGI H ++ + LG+ VIVTDHH G TLP A AI++P N+P + L G GVA+ Sbjct: 145 NGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIVHPMHPSFNYPFQQLCGAGVAYK 204 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLD-LVALGTVADVVPLDANNRILTWQGMSRIR 256 L AL I N+ + LVA+GT+AD+V L NR L QG+ ++ Sbjct: 205 LAQAL----------------IENVPDYFKALVAIGTIADLVSLTDENRSLVKQGL-KVL 247 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 +C +KALL+ A + + +GF +GPRLNA GRLDD S+ LL+ D+ EA Sbjct: 248 NDQCPTSVKALLKEAGYN-DNIDEETIGFIIGPRLNAVGRLDDASLACELLMTDDEEEAA 306 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 LA +++ N+ RK+I + EA+ + E ++ D L + WH+GV+GI+AS+ Sbjct: 307 FLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDLF---LLLAKENWHEGVLGIVASK 363 Query: 377 IKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 I E F P + + KGS RSI + M + L + + ++ KFGGH MAAG+ Sbjct: 364 IVETFALPTLILNIDREQNHAKGSARSIDQVSMFEIL----SAHQELIAKFGGHHMAAGM 419 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 +++ + + + + + E + L D L+ ++T++ + + P+G F Sbjct: 420 TMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTENDITIKNIRDMNRLRPFGTDF 479 Query: 496 PEPLFD-GHFRLLQQRLVGER--HLKVMVEPVGGGPLLDGIAFNVDTALWPD-NGVREVQ 551 P+F+ + + +G++ HLK+ + L F + L P+ + + Sbjct: 480 SRPIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAAL-----FWQNGHLEPELQDEQPIN 534 Query: 552 LAYKLDINEFRGNRSLQIIIDNI 574 + + INE+ GN+S Q+II +I Sbjct: 535 ILGSVQINEWNGNQSPQLIIQDI 557 >UniRef50_B9XN50 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=bacterium Ellin514 RepID=B9XN50_9BACT Length = 577 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 201/579 (34%), Positives = 307/579 (53%), Gaps = 47/579 (8%) Query: 21 ELPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRII 75 ++ PLL + +RG+ +A+ L ++ L P+ L + AVE L+ A + ++ Sbjct: 23 KVSPLLAQCLVNRGMSNAEALATFLQPRLKELADPFL-LPNMAAAVERLFQARQRKESLV 81 Query: 76 VVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR-GAQLIV 134 V GD+D DG TSTAL ++R+LG + +++ +P+R E+GYGLS E V+ + L++ Sbjct: 82 VFGDYDVDGVTSTALLAESLRALGWT-VNFYLPHRMEEGYGLSQEGVENCLRKFPTTLLL 140 Query: 135 TVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL-----RDCNFPSKSL 189 VD G ++ +++ R GI V+V DHH PAA A++NP L D + L Sbjct: 141 AVDCGSTAVTTIDYLRQKGIDVLVLDHHQVSSPAPAAIALVNPQLGPTREEDGKSSFREL 200 Query: 190 AGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTW 249 VG+AF L+ AL R+ G + +L LLDLVALGT+AD+VPL NRIL + Sbjct: 201 CSVGLAFKLVHALVKRGREVGLAEAEKY---DLRPLLDLVALGTIADLVPLTGENRILVY 257 Query: 250 QGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLC 309 G+ R+ + RPG+ AL +VA A + A ++GF L PRLNAAGRL++ + + LL+ Sbjct: 258 MGLQRL-SSTVRPGLVALKKVAQVTA-SMGAYEVGFQLAPRLNAAGRLENAAEALDLLMA 315 Query: 310 DNIGEARVLANELDALNQTRKEIEQGMQIEAL-TLCEKLERSRDTLPGGLAMYHPEWHQG 368 ++ A +A LD N+ R++IE+G+ E + ++ K RD + + WH G Sbjct: 316 PDMQTAVPIAESLDLRNRERQKIEKGIVEEVIGSVRAKFNPERDYV---IVEGQLLWHVG 372 Query: 369 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGG 428 VVGI+ASR+ ++F+RP I GD +GSGRSI G + AL D L +++ GG Sbjct: 373 VVGIVASRVLQQFYRPTIIVGGEGD-EWRGSGRSIAGFDLAAALRDCDDL----LVRHGG 427 Query: 429 HAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 HAMAAGL++E K L + R EL + LQ + D ++ E+ + L Sbjct: 428 HAMAAGLTIEAGKLDLLRVRMNELAQRLIKREELQPLLRLDAEVTLKEINFDSLFELDLL 487 Query: 489 GPWGQMFPEPLF----DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD 544 P GQ P F R LQ+ ++H+K+ L DG A + A+W Sbjct: 488 KPTGQGNPVVQFMVRNVTQARPLQRMGAEKQHVKLW--------LTDGTATH--EAVWWG 537 Query: 545 NG------VREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 G V LA+ INEF G R++Q+ + + P+ Sbjct: 538 AGKDTALPVGRFDLAFAPQINEFAGRRTVQLKVLDWKPM 576 >UniRef50_UPI0001C37215 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37215 Length = 675 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 184/569 (32%), Positives = 287/569 (50%), Gaps = 44/569 (7%) Query: 20 AELPPLLRRLYASRGVRSAQELERS--VKGMLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 ++ PL A++G + + + S V G+ + ++ A E + A +I V Sbjct: 21 CQVSPLTAAALAAKGYTTPESVADSLNVDGLSDPFMIKDMDIAAETINEAIDNEEKICVY 80 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG ST + + G +++ Y +P R E GYGL+ +D+ G LIVTVD Sbjct: 81 GDYDCDGIMSTVILFSYLFEAG-ADVVYYIPERSE-GYGLNKNAIDKIRDDGVSLIVTVD 138 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 NGIS+ + E+ G+ +++TDHH GDTLP AEAI++P+ DC K + G G+A Sbjct: 139 NGISAISEAEYIYECGMKLVITDHHQQGDTLPRAEAIVDPHRHDCPSGFKHMCGAGLALK 198 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 L AL D G + +A+ + DL A+ TVAD+V L NR L +GM R+ Sbjct: 199 LTAAL-----DGGDY---TLAMEQFS---DLAAIATVADIVSLTGENRFLVSEGM-RLID 246 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 RP + AL +V + +++ ++ +GF L PR+NA+GR L LC++ EA Sbjct: 247 NTDRPALLALKKVCGLEDKEIDSTSIGFGLAPRINASGRFGSPRTAAELFLCEDPDEALD 306 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCE---KLERSRDTLPGGLAMYHPEWHQGVVGILA 374 +A+ELD LN RK E + E + + + R R G WH GV+GI+A Sbjct: 307 IASELDKLNTMRKSAENDIISEISAMIDSDPSIIRKRVIYLSG-----KNWHHGVIGIVA 361 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 +RI+E F +P A DG ++GS R+ + +AL T + KFGGH A G Sbjct: 362 ARIQEMFGKPCF-IASETDGEVRGSARAFGEFSVFEAL----TYASDALSKFGGHPGAGG 416 Query: 435 LSLEEDKFKLFQQRFGELVTEW------LDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 ++++ +RFGEL+ E+ + P L + +D PL+PAE+T + + L+ Sbjct: 417 FTVKDG----MTERFGELLEEYAAANHEIMPLL---SLSADSPLTPAELTFQNVEDLKKL 469 Query: 489 GPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGV 547 P+G +PLF + + + R +G M++ G + F + P Sbjct: 470 EPYGMGNEQPLFYIENAEITEIRPMGNGS-HSMIKFKFGTTEYNAKMFRTSPDMLPVGKG 528 Query: 548 REVQLAYKLDINEFRGNRSLQIIIDNIWP 576 ++ L INEFRGNRSL I++ +I P Sbjct: 529 DPAKMIVTLGINEFRGNRSLDILVKDIRP 557 >UniRef50_D1BND6 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Veillonella RepID=D1BND6_VEIPT Length = 661 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 185/567 (32%), Positives = 295/567 (52%), Gaps = 44/567 (7%) Query: 24 PLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIVVG 78 P++ +L +R + E R ++G L P+ L ++ AV ++ I++ G Sbjct: 29 PIVAKLMVNRHI-DVDEGRRFLQGTLSDLLDPFT-LKDMDVAVSLVLETIESHKPIVIYG 86 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DG T+T++ ++ LG +++ Y +P R +GYGL+ E + RG L++TVD Sbjct: 87 DYDVDGITATSVLYRFLKKLG-ADVTYYIPERQSEGYGLNLEALKHLIERGTDLVITVDC 145 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 GISS+ VE R I +I+TDHH D +P A+A+IN +DC + K+L+GVGVAF L Sbjct: 146 GISSYDIVEAVRD-RINMIITDHHTAPDVIPRAKAVINHKQKDCPYKDKNLSGVGVAFKL 204 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 AL + + D+ LD+VALGTVADVVPL NRI+ G+ ++ + Sbjct: 205 CQALWLTKHGEWYLDD-----------LDIVALGTVADVVPLVGENRIIVKSGLEKMNSY 253 Query: 259 KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVL 318 GI L++VA + + + +G+ L PRLNAAGR+ + V LL+ D+ A + Sbjct: 254 P-NLGINKLIDVAGLHERTITSGHIGYTLAPRLNAAGRVTHATRAVELLVTDDADIAEAI 312 Query: 319 ANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY-----HPEWHQGVVGIL 373 A EL+ N+ R+E+E+ + +L R G A Y EWH GV+GI+ Sbjct: 313 AEELNETNRERQELERNIH--------ELARIDVANQGHKADYVTIVAGEEWHPGVIGIV 364 Query: 374 ASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAA 433 ASR+ E F++P + + DG KGS RSI G ++ DAL+ + + +L+FGGH+ AA Sbjct: 365 ASRLVEEFYKPTLVIS-IHDGVGKGSCRSIDGFNIYDALKSCEDI----LLQFGGHSAAA 419 Query: 434 GLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQ 493 G S++ ++ + R + E + V D L ++ +++ + D P+G Sbjct: 420 GFSIDANRIDELRYRLTKYCKEVVTAEEYIPVVAIDAELPVDDIDVDIIDRVSDLEPYGM 479 Query: 494 MFPEPLFDGHFRLLQQ-RLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREV 550 P+F +Q L+G+ H KV+ G LD IA+N V Sbjct: 480 ANSTPVFAIMEATVQDIMLMGQLKNHCKVIFATSNGT--LDAIAWNCPDLFRSIFVGTVV 537 Query: 551 QLAYKLDINEFRGNRSLQIIIDNIWPI 577 ++A+ L NE++G S Q++I I P+ Sbjct: 538 KVAFSLQKNEWQGLVSPQLMIQAIEPL 564 >UniRef50_Q7MAI2 PUTATIVE SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE EC 3.1 n=1 Tax=Wolinella succinogenes RepID=Q7MAI2_WOLSU Length = 534 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 185/562 (32%), Positives = 287/562 (51%), Gaps = 47/562 (8%) Query: 23 PPLL--RRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 PPLL R + + R A++ +K + ++L G+ +A +++ A ++ RI+V+GD+ Sbjct: 7 PPLLGKREIESILSQRFAKDRFCRLKDLPSPEKLHGIPQACDLIIEAMQQKRRIVVIGDY 66 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 D DG STA+ V L I ++PNRF DGYGLSP ++++ LI+TVDNGI Sbjct: 67 DVDGIVSTAIMVDFFHRLS-YPITSVIPNRFCDGYGLSPALIERLET---DLIITVDNGI 122 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 +H + + GI +I+TDHH P LP A+ IINP L C+FP K + G VA+YL Sbjct: 123 MAHEAAKICQERGISLIITDHHTPPLELPCAKVIINPKLSCCSFPQKEICGASVAWYLCA 182 Query: 201 ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKC 260 AL+ L A ++ E LDL+AL +ADV+PL NR+L QG+ + A Sbjct: 183 ALKGRLE----------AKIDMGEFLDLLALAIIADVMPLVEVNRLLVRQGLKEM-ARSN 231 Query: 261 RPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLAN 320 R L E + + D+ F + P LN+AGR++D S+ + LL D+I EA + Sbjct: 232 RAAFVVLKEKLRKS--HFSGEDVAFLIAPLLNSAGRMEDASLSLEFLLSDSILEAGEKFD 289 Query: 321 ELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKER 380 L ALN RKE E + EAL D L Y +WH+GV+GI+ASR+ +R Sbjct: 290 RLCALNCLRKETESRLFEEALG-------QIDLCGEALLAYGEDWHEGVLGIVASRLTDR 342 Query: 381 FHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEED 440 + +P +G+LKGS RS+ L + L++ L +L++GGH AAG+ L + Sbjct: 343 YKKPAFILT-QKEGSLKGSARSVGELDLVRLLQKSHHL----LLRYGGHKGAAGIQLRRE 397 Query: 441 KFKLFQQRFGELVT------EWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 F+ F+Q E ++ EW +GE G ++ + E+ +L P+G+ Sbjct: 398 NFESFKQAIEEELSRLKERIEW----RCEGEECL-GEIALESVDAELLDILERFEPYGEG 452 Query: 495 FPEP-LFDGHFRLLQQRLVG-ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQL 552 P+P F R+ + ++VG E++ +V G IAF P + + Sbjct: 453 NPKPRFFCKEARVCRYKIVGAEKNHTSLVLKNPSGNERKAIAFRQVYEFAP---LASISC 509 Query: 553 AYKLDINEFRGNRSLQIIIDNI 574 + L + F Q+II+ + Sbjct: 510 LFSLSRDIFSAESIPQLIIERL 531 >UniRef50_C6JNX8 Single-stranded-DNA-specific exonuclease recJ n=3 Tax=Fusobacterium RepID=C6JNX8_FUSVA Length = 860 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 172/561 (30%), Positives = 289/561 (51%), Gaps = 34/561 (6%) Query: 25 LLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 +L LY +R + +E L+ VK + L V+KAV L A + + GD+ Sbjct: 28 ILNLLY-NRNIIEKEEIKNFLDVDVKNIADPFSLKDVDKAVNRLVQAKENNETVWIYGDY 86 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 D DG TS +L LA+ LG ++ Y +P R ++GYGL+ E ++ G L++TVD GI Sbjct: 87 DVDGITSVSLCFLALSELGI-DVKYYIPLR-DEGYGLNMEAINYIKNEGGTLVITVDCGI 144 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 SSH + HA SLGI +IVTDHH + P A A+INP D ++ K LAGVG AF ++ Sbjct: 145 SSHEEISHASSLGIDMIVTDHHEINNGNPKALAVINPKREDNDYSFKYLAGVGTAFMMIA 204 Query: 201 AL-RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 AL +T +++ + + LD+VA+GTVAD+VPL NRI +G+ +R + Sbjct: 205 ALFKTLDKEEEVY-----------KYLDIVAIGTVADIVPLLKENRIFVKEGLEHLRRSR 253 Query: 260 ---CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 IK + E + D +K D+GF + P NA GRL+D V L + + Sbjct: 254 WLGLNMLIKKIFE--DYDIRKFNTYDIGFIIAPIFNAVGRLEDAKKAVELFIEKDHRVCS 311 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 +L N RKEI++ + +A+ EK+E + L + +H GV+GI+AS+ Sbjct: 312 AAIKDLLEKNSERKEIQEEIFEKAI---EKIENEKLYENSVLIVGEKGFHHGVIGIVASK 368 Query: 377 IKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 + +R+++P I D G S RSI+G ++ +A+ + +++K+GGH+ AAG Sbjct: 369 VLDRYYKPTIIMEIKPDEGIATASCRSIEGFNIIEAINN----FSDLLIKYGGHSGAAGF 424 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 S++ + + F ++ + ++ S L + D PL +++ + + P+G Sbjct: 425 SIKIENIEEFSKKLNDYAKTAMEDSTLIKPIKVDRPLPFYKISYDFLDKISLLEPFGFGN 484 Query: 496 PEPLFD-GHFRLLQQRLVGERHLKVMVEPV-GGGPLLDGIAFNVDTALWPDNGVREVQLA 553 P PLF + + RL+G+ +M+ + G + + + FN D +R + +A Sbjct: 485 PSPLFSLNNCQFDGLRLIGKDKKHIMMNVIKNGNEIRNCVWFNSDDIFENLVNLRNIDIA 544 Query: 554 YKLDINEFRGNRSLQIIIDNI 574 +KL + ++ ++ I++I Sbjct: 545 FKLKLETYKDRYQYKMYIEDI 565 >UniRef50_Q26GN0 Single-stranded DNA-specific exonuclease n=7 Tax=Flavobacteria RepID=Q26GN0_9BACT Length = 565 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 170/530 (32%), Positives = 272/530 (51%), Gaps = 34/530 (6%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 + ++ AV+ + A I+V GD+D DG TS AL + S + +P+R+ + Sbjct: 59 MKDMDVAVQRIQKAIGNNENILVYGDYDVDGTTSVALMSTFLLSF-YDRVATYIPDRYGE 117 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG+S + +D A LI+ +D G+ + V +A GI I+ DHH PG LP A A Sbjct: 118 GYGVSYQGIDYAADNDFSLIIALDCGVKAIDKVAYAAEKGIDFIICDHHRPGKKLPNAIA 177 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 +++P DC +P L G GV F L A F+ W E + IP LDLVA Sbjct: 178 VLDPKRDDCTYPFDELCGCGVGFKLCQA---FVEANDW--EFEMLIP----YLDLVATAI 228 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 AD+VP+ NRIL + G++ I R G KA++ +D L +D+ F + PR+NA Sbjct: 229 GADIVPIVGENRILAYHGLNVINTSP-RAGFKAIIHQLKKDT--LTITDVVFIIAPRINA 285 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEAL-TLCEKLERSRD 352 AGR+ V L++ D+ EA+ +A E++ N R+E ++ + EA + E R Sbjct: 286 AGRMKHALHAVELMVTDDFKEAQRIAAEIEEYNADRREADRSITEEAKQQIINNNEEERF 345 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 T ++ WH+GV+GI+ASR+ E ++RP + F +GD L S RS+ G + +AL Sbjct: 346 T----TVVFQENWHKGVIGIVASRLIETYYRPTLVFTKSGD-YLAASARSVSGFDVYNAL 400 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 E+ + +FGGH AAGL+L+ + + LF+ RF E+V ++ L E+ D L Sbjct: 401 EQC----SDYIEQFGGHKYAAGLTLKPENYSLFKDRFEEVVCATIEKQHLTPEIKIDAML 456 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLF-------DGHFRLLQQRLVGERHLKV-MVEPV 524 ++ + ++L+ P+G P+F G+ + + + E HLKV +V+ Sbjct: 457 PLENISPKFYRILQQMAPYGPGNMRPVFMTEKVMDTGYGKCVGK---SEDHLKVKVVKNK 513 Query: 525 GGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +D I FN+ + +AY + NE+ GN SLQ+++ +I Sbjct: 514 NDRNGMDAIGFNLGGKSDLVKNKVKFDIAYTISENEWNGNISLQLLLKDI 563 >UniRef50_D1VS52 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS52_9FIRM Length = 598 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 180/583 (30%), Positives = 296/583 (50%), Gaps = 58/583 (9%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREGTRIIVV 77 L +L R+ +RG++S +ELE+ +K L L + K+ I+ + +G+ I +V Sbjct: 21 LNKILYRILLNRGIKSDEELEKFLKPDLSNIHSPIFLKDMVKSANIIISHITKGSNIRIV 80 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG TST + ++ +G + + Y +PNR DGYG++ +++D+A LI+T D Sbjct: 81 GDYDVDGITSTYILYCGLKKIG-AKVSYDIPNRVLDGYGINNKIIDRAKEDDISLIITCD 139 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPG---------DTLPAAEAIINPNLRDCNFPSKS 188 NGI++ V++AR+LGI VIVTDHH P + LP A +I+P + D +P K Sbjct: 140 NGIAAFEPVKYARNLGIDVIVTDHHEPAKVLIEGVLQEKLPDANGLIDPKVSDSKYPFKD 199 Query: 189 LAGVGVAFYLM--LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRI 246 + G VAF L+ L L +Q +D + L VAL TV DV+PL NRI Sbjct: 200 ICGACVAFKLISYLYLIKGKEEQEVYD----------DFLAYVALATVCDVMPLKDENRI 249 Query: 247 LTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVAL 306 L G+ ++ + G+ AL+ + + + +GF +GP LNA GRL V L Sbjct: 250 LIHYGLEALKNVQ-DVGLNALISACDIKKEDIDVYHIGFIIGPTLNACGRLKTAKEAVEL 308 Query: 307 LLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWH 366 LL + A A E+ ++N R+ I+A+ + ++ E + P L +Y P + Sbjct: 309 LLEKDYNSAIEKAKEIRSINNQRQNYTNDGYIKAIKIIKEQELLK-KYP-ILLIYVPNIN 366 Query: 367 QGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKF 426 + +VGI+A RIKE+F+RP I + +G +KGSGRSI +M + + ++ + F Sbjct: 367 ESIVGIIAGRIKEKFYRPTIVLTDS-NGIIKGSGRSIDEYNMFEEV----NVFRDELEAF 421 Query: 427 GGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLR 486 GGH MA GLS++++ F F + D L ++ D PL+ +++ M++ Q L Sbjct: 422 GGHKMACGLSIKKENFNNFNLNLNKNAKLTRDD--LTKKIYIDYPLNFSQINMKLIQDLN 479 Query: 487 DAGPWGQMFPEPLFDG-HFRLLQQRLVGERH--LKVMVEPVGGGPLLDGIAFN------- 536 P+G +PLF + ++ + G +K+M+E G + + F Sbjct: 480 KLKPFGTDNEKPLFGSRNLKITDIAIFGTNKNVIKLMLED--SGVFQNALLFKDSNEFLN 537 Query: 537 ----------VDTALWPDNGVREVQLAYKLDINEFRGNRSLQI 569 V L N ++ + Y +D+N FRGN S+++ Sbjct: 538 DLKKAYGQEAVTGLLQKSNKNIKIDVIYSIDVNNFRGNSSIEL 580 >UniRef50_C3CT94 Single-stranded-DNA-specific exonuclease recj n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CT94_BACTU Length = 573 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 159/521 (30%), Positives = 283/521 (54%), Gaps = 41/521 (7%) Query: 10 REVDETADLPAELPPLLRRLYASRGVRSAQELER----SVKGMLPWQQLSGVEKAVEILY 65 +E++ AD E+ LY +RG + +++E + M Q + +KAV +L Sbjct: 29 KELNHLADCVLEI------LY-NRGFDTIEKIESFLHMDITDMHNPQLMKDSDKAVSLLS 81 Query: 66 NAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA 125 +A + I+V GD+D DG ++T+++VLA+R+LG + + Y V NRF+ GYG++ ++ Sbjct: 82 HAIKNNLHIVVYGDYDCDGVSATSVAVLALRNLG-AKVSYFVNNRFKHGYGMNVLGLEDM 140 Query: 126 HAR--GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLP-AAEAIINPNLRDC 182 + +++TVDNGI ++ G++ A+ LG+ VIVTDHH PGD LP A+A++NP DC Sbjct: 141 MKKYPDVDVVLTVDNGIVAYEGIKKAKELGLTVIVTDHHDPGDHLPEEADAVVNPKRHDC 200 Query: 183 NFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA 242 +P K L G V + +ML L W E + + + +++D+V + TV D++PL Sbjct: 201 EYPFKGLCGASVIYKVMLQLY-------W--ELDKDLDYVQDMIDIVGIATVGDIMPLID 251 Query: 243 NNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD-DMS 301 NR+ + + +++ + R K L E +++ GF P +NA GR+ D+ Sbjct: 252 ENRVFVTESIRQVKRAQ-RHVFKVLQEKTG--VKEITEETYGFKYVPMINALGRITGDVD 308 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 + + + + + + ++ N+ RK+I + + A+ + E+ + + +Y Sbjct: 309 EAIEMFVSQDEEKIPEIVEKVIETNEYRKQITEEQEALAIQMVEE-----KGIKPVIVIY 363 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 HP +H+G+VG++A R+KER+ RPVI A G G +KGS RSI H++ A + G Sbjct: 364 HPSFHEGIVGLIAGRLKERYFRPVIVLA-EGHGFIKGSARSIPNFHIKKAFDETKEYLIG 422 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 +GGH MA GLSL+E+ + F+++ L L + ++ D + P ++T+++ Sbjct: 423 ----YGGHPMAGGLSLKEEHLEAFEEKICSLAESQLTEADFIPRIMVDTVVEPKDVTVDL 478 Query: 482 AQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGE--RHLKV 519 + L P+G+ F +P F F++ + +GE HLK+ Sbjct: 479 VEELDVLKPFGEAFSKPNFGLKGFKVDKVYYMGENKNHLKL 519 >UniRef50_A9KLD3 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Clostridium RepID=A9KLD3_CLOPH Length = 592 Score = 258 bits (658), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 187/610 (30%), Positives = 313/610 (51%), Gaps = 57/610 (9%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGV 57 K ++ +R + + A+ A + P+L R+ +RG+ E++R + M + G+ Sbjct: 4 KWMLEAKRADFEALANRLA-ISPVLARIIVNRGLSEEDEMQRYLSCDLTEMYSGLMMKGM 62 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 E+A ++ A E I + DFD DG S A++ +G + Y P+R +GYGL Sbjct: 63 EQARNLIITAVEENQLIAIGTDFDNDGILSGHSLSTALKRIGGRVVVY-APDRISEGYGL 121 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH---LPGDT------- 167 + +V +A+ G++LI+T DNGI+ +++A+ LG+ V+VTDHH D Sbjct: 122 NRRIVLEAYEAGSRLIITCDNGIAVFDAIDYAKELGMTVVVTDHHEVAFEEDENGSRTFL 181 Query: 168 LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLD 227 LP A+ ++NP C +P K L G GV + L+ L ++ ++ L +LL+ Sbjct: 182 LPNADVVVNPKQEGCPYPFKGLCGAGVVYKLIELL---------YEYYSVPKEELYDLLE 232 Query: 228 LVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFAL 287 +A+ TVADV+ L + NR++ G+ + K GI+AL+E + ++++A +GF + Sbjct: 233 FIAIATVADVMDLVSENRLIVKHGLKLLSQSK-NLGIRALIEECGLEQKRISAYHIGFVI 291 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIE-QGMQIEALTLCEK 346 GP NAAGRLD ++V + LL EA+ LA L LN +RK++ QG++ E+ Sbjct: 292 GPCFNAAGRLDTVAVALDLLDAKTTEEAKQLAVSLKKLNDSRKDMTLQGVE----QAIER 347 Query: 347 LERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGL 406 +E S L + + H+ +VGI+A R++ER+++P + F G +KGSGRSI+ Sbjct: 348 IETSDLIHDKVLVVKLRDTHESLVGIIAGRLRERYNKPALVFVDVEQG-VKGSGRSIESY 406 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 +M + L + L + KFGGH MAAGLSL+ + + + R + T L L V Sbjct: 407 NMFEELLKCKDL----LTKFGGHPMAAGLSLKAENLETLRARLNQNTT--LSEEDLIPIV 460 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVG 525 D PL + + L P+G+ +P+F + HF++ Q R++G+ + + + Sbjct: 461 RIDIPLPIGYLNEAFLEELEKLEPFGKGNIKPVFAEQHFKIRQARILGKNQNVLKLNIIN 520 Query: 526 G-GPLLDGIAFNVDTAL-------WPDNGVR--------EVQLAYKL--DINEFRGNRSL 567 G +D + F T + VR EV LA+ +NE+ GNR++ Sbjct: 521 SEGFAMDALYFGDITEFNEFAEMEYGKEEVRKMYLGQYNEVDLAFTYYPTLNEYMGNRTV 580 Query: 568 QIIIDNIWPI 577 Q+II N I Sbjct: 581 QVIIQNYCRI 590 >UniRef50_Q1WT52 Single-stranded-DNA-specific exonuclease n=5 Tax=Lactobacillales RepID=Q1WT52_LACS1 Length = 777 Score = 258 bits (658), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 191/589 (32%), Positives = 303/589 (51%), Gaps = 52/589 (8%) Query: 3 QQIQLRRRE-VDETADLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGV 57 Q+I+L E +DE + P ++ ++ RG S + L+ +G+ + + Sbjct: 9 QEIELSENEHLDELIEETG-FPKIVLQILMERGYDSLEAINNFLDPDARGLYDPNFMHDM 67 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 E V+ + A G +I++ GD+D DG TSTAL + LG ++Y +P+RF+DGYG Sbjct: 68 ELGVDRIQQAIMNGEKIVIYGDYDVDGITSTALMYETLEELGAE-VEYYIPDRFKDGYGP 126 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + EV + G LIVTVDNG++ H +++A G+ V+VTDHH +TLP A AII+P Sbjct: 127 NVEVYKRLIDEGVSLIVTVDNGVAGHEAIDYANQHGVDVVVTDHHELPETLPDAYAIIHP 186 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 + ++P L+GVGVAF + AL L ++LDLVALGTVAD+ Sbjct: 187 RHPEGDYPFGELSGVGVAFKVAAALLEELP---------------QDVLDLVALGTVADL 231 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 V L NRIL G+ ++ RPG+++L +VA + + +GF+L PRLNA GR+ Sbjct: 232 VSLTGENRILVKYGLQLLQQ-TMRPGLQSLYKVAGIEVPTITEETIGFSLAPRLNALGRM 290 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALT-LCEKLERSRDTLPG 356 ++ S+GV LL + A LA + LN R+E + EA+ L K E + Sbjct: 291 ENGSLGVELLTTLDEERAEELAKTTNQLNIKRQEEVNKIVEEAVAQLANKSENHLVNVVA 350 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRDALERL 415 G WH+GVVGI+ASR+ + +P + + G KGSGRSI+ M DAL+ Sbjct: 351 G-----NNWHEGVVGIVASRLVDMTGKPSLVLSIDEKTGIAKGSGRSIEAFQMFDALDS- 404 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGEL-----VTEWLDPSLLQGEVVSDG 470 + +++KFGGH MA GLSL+ +K QQ E + P VV Sbjct: 405 ---HRDILMKFGGHHMACGLSLDREKLSDLQQVVDEEGKKQGIEHATKP------VVKVI 455 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGER--HLKVMVEPVGGG 527 P++ ++ + + L P+G P P+F+ + + + +G++ HLK+ ++ Sbjct: 456 PVNLDDVNLGLEAQLEALAPFGTDNPRPVFEFKDYEVNTVQAIGQQKNHLKLQLQ--SNN 513 Query: 528 PLLDGIAFNVDTALWP--DNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +D + F + + + V+L L N ++ +LQI+I++I Sbjct: 514 SQVDALDFGIGSKKISEIERNKNSVRLIGTLGKNVWQSRVNLQIMIEDI 562 >UniRef50_Q038P0 Exonuclease RecJ n=8 Tax=Lactobacillus RepID=Q038P0_LACC3 Length = 764 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 183/561 (32%), Positives = 293/561 (52%), Gaps = 40/561 (7%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIV 76 +PP L L RG+ + + V P+ L ++KAV + A + +I + Sbjct: 26 VPPFLATLLLQRGINDQADYDAFVHPDTSRLHDPFA-LHDMDKAVARILKAIEQNEKITI 84 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+D DG TS+A+ + ++SLG + D +P+RF DGYG + EV G QL++TV Sbjct: 85 YGDYDVDGLTSSAIMLETLQSLGA-DPDVFIPDRFTDGYGPNAEVYAYLQKTGTQLVITV 143 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 DNG++ A ++ A++ G+ V+VTDHH LP A A+++P D ++P L+G GVAF Sbjct: 144 DNGVAGAAVIDPAQAAGMDVVVTDHHELPAKLPHAVAVVHPRHPDGDYPFGDLSGAGVAF 203 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 + AL + P L E +DL ALGT+AD+V L NR++ G+ I+ Sbjct: 204 KVATAL--------------LGEPPL-ESVDLAALGTIADLVSLTDENRVIAQLGLKMIQ 248 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 + R G+ A+L+ A + + + +GF +GPRLNA GR+ D + GV LL A Sbjct: 249 T-QPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRMGDANPGVTLLTTFEDDVAA 307 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 LA ++ LNQ R+ + + EALT+ + E L + WH+GVVGI+AS+ Sbjct: 308 ELAEQVGKLNQERQGLVAKIAQEALTMAQAPENQAAKT---LLLASKGWHEGVVGIVASK 364 Query: 377 IKERFHRPVIAFAPAGDG-TLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 + E +P + A DG T KGSGRSI+ H+ ALE M+ FGGH MA GL Sbjct: 365 VVEATGKPTLIMNIADDGETAKGSGRSIEAYHLFKALEPAKE----HMVHFGGHHMAVGL 420 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 + + + E + ++ + + L A++T++ QL+R P+GQ Sbjct: 421 TAKTTDLPAIHAQM-EAAAATMLKTVPKPTLPITTRLEDADLTLDHYQLIRQLAPFGQGN 479 Query: 496 PEPLFDGHFRLLQQ-RLVGER--HLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQL 552 PEP+F +++Q + +G+ HL+ ++ ++ I F A + V+L Sbjct: 480 PEPVFSVRPQVIQNVKQIGKENNHLRFQIDQG-----INVIGFGYGDAAETLATAQAVKL 534 Query: 553 AYKLDINEFRGNRSLQIIIDN 573 A +LD N ++G+ SLQ+++ + Sbjct: 535 AVQLDQNTWQGHTSLQLMLKD 555 >UniRef50_Q137L0 Exonuclease RecJ n=91 Tax=Alphaproteobacteria RepID=Q137L0_RHOPS Length = 633 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 201/571 (35%), Positives = 310/571 (54%), Gaps = 28/571 (4%) Query: 21 ELPPLLRRLYASRGVR---SAQELERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIV 76 +LP +L R+ A RGV L+ +++ ++P ++ +E + + +A + + + Sbjct: 68 QLPEMLARVIAGRGVEIDAVPDFLDPTIRKLMPDPSSVTQMEAGAQRIADAAMKRETVAI 127 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+D DGATS AL +R G + + +P+R +GYG + + + +GA L++TV Sbjct: 128 FGDYDVDGATSAALLTWHLRHCGLDPLIH-IPDRIFEGYGPNVDAIRGLSEKGATLLITV 186 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D G +S + AR LG+ V+V DHH GD LP EA+INPN D LA VG+ Sbjct: 187 DCGTTSLEPLAEARRLGMSVVVIDHHQCGDELPEVEALINPNRPDDLSGLGHLAAVGLVM 246 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 ++A+ LR +G++ + PNL ++L VALGTVADV PL NR +G+ +R Sbjct: 247 MTLVAVNRELRHRGFWTV-ELPEPNLLDMLHHVALGTVADVAPLIGLNRAFVAKGLIALR 305 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 + G AL++VA + LGF LGPR+NA GR+ +GV LLL ++ EA Sbjct: 306 R-RDHVGHTALMDVARLNGPP-DVFHLGFMLGPRINAGGRIGRADLGVRLLLEGDVSEAA 363 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE-WHQGVVGILAS 375 +A ELD LN R+ IEQ + +A D G + + E WH GVVG++AS Sbjct: 364 RIAAELDRLNTERRVIEQMAEAQAEAEAMASLGLEDK--GAVIVTASEGWHPGVVGLVAS 421 Query: 376 RIKERFHRPVIAFA--PAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAA 433 R+KE+F RP A A P G GT GSGRSI G+ + A+ R + G+++K GGHAMAA Sbjct: 422 RLKEKFGRPAFAIALEPGGIGT--GSGRSIGGVDLGRAVRR--AVSEGLLMKGGGHAMAA 477 Query: 434 GLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQ 493 G++L +++ F+ + + S E++ DG +S +T E A L AGP+G Sbjct: 478 GVTLRKERLAEFRGWLETALAADVAKSRHINELLIDGAVSARGVTTEFAATLNRAGPFGA 537 Query: 494 MFPEPL--FDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF-----NVDTALWPDNG 546 PEP+ H +L+ VG+ HL++ + G G +++GIAF + AL + G Sbjct: 538 GNPEPVIALPAH-QLIYADEVGQAHLRLRFKS-GDGAIVNGIAFRSVGQKLGQALTENRG 595 Query: 547 VREVQLAYKLDINEFRGNRSLQI-IIDNIWP 576 + + +A L I+ ++G +Q+ +ID P Sbjct: 596 -QSLHVAGSLSIDRWQGAERVQLRVIDVAVP 625 >UniRef50_UPI0001BC5E35 single-stranded-DNA-specific exonuclease recJ n=3 Tax=Fusobacterium RepID=UPI0001BC5E35 Length = 842 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 168/528 (31%), Positives = 284/528 (53%), Gaps = 29/528 (5%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L ++KAV +L A ++ + + GD+D DG TS +L LA+ LG ++Y +P R ++ Sbjct: 48 LKDMDKAVHLLQEAKKKQQTVWIYGDYDVDGITSVSLCYLALTELGYP-VEYYIPLR-DE 105 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYGL+ E + + +G ++++TVD GI S V+ A SLG+ +I+TDHH LP A A Sbjct: 106 GYGLNQEALQYIYEQGGRIVITVDCGIVSVKEVDFANSLGMTMIITDHHEIQGELPKAAA 165 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 +INP + +P SLAGVG AF+L+ AL +G +E + + D+VALGT Sbjct: 166 VINPKREENLYPFPSLAGVGTAFFLVTAL---FEQEGKREE-------IQKYFDIVALGT 215 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLE--VANRDAQKLAASDLGFALGPRL 291 VAD+VPL +NRIL QG++ + A G++ L++ + + ++ +A D+GF L P Sbjct: 216 VADIVPLVEDNRILVQQGLA-LLAKSQWTGLRILVKRLFPDYETRRFSAYDIGFILAPIF 274 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLC-EKLERS 350 NAAGRL+D V L L + +A + L N R+ +++ + L C E++++ Sbjct: 275 NAAGRLEDAKSSVKLFLEKDSKKANAQIDSLIQNNMERRRVQEKI----LQACLEEIQQK 330 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMR 409 + L + +H GV+GI+AS++ +RF++P I +G S RSI G+++ Sbjct: 331 KLEEKNALVIAREGFHHGVIGIVASKLVDRFYKPSIVMEIKPEEGIATASCRSISGINIV 390 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 +AL + L +L++GGH+ AAG S+ + F + F ++++ + LL ++ Sbjct: 391 EALGEISPL----LLRYGGHSGAAGFSILIENISTFYEEFEKVLSRKVTEELLAKKLSIT 446 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGG 526 L P ++ + +R P+G P P+F H RL + RL+G ++HL + G Sbjct: 447 KELLPFQIQYPLLHDMRYLEPFGASNPAPIFALKHCRLDKIRLIGADKKHLMCNIHH-GD 505 Query: 527 GPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + + F +EV +A+ L + +RG +I I++I Sbjct: 506 TVFWNCVWFQASDVYEELLFAKEVDIAFHLKLEMYRGRYQYKIFIEDI 553 >UniRef50_Q049X0 Exonuclease RecJ n=22 Tax=Lactobacillus RepID=Q049X0_LACDB Length = 758 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 177/570 (31%), Positives = 289/570 (50%), Gaps = 67/570 (11%) Query: 21 ELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIV 76 +L PL +L++ RG+ + ++ L S + + ++KAV + A EG +I + Sbjct: 20 QLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMHDMDKAVGRINQALDEGEKITI 79 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+DADG T+TA+ + +G +++ Y +P+RF+DGYG S + A G +LI+TV Sbjct: 80 YGDYDADGITATAIMTEMLTIMG-ADVHYFIPDRFKDGYGPSLDRYKDIVADGTKLIITV 138 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 DNG + V +A+S G+ VIVTDHH + P A A+++ N +P G GVA+ Sbjct: 139 DNGATGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVHCNYPGQAYPFDDYCGAGVAY 198 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 + R L D +E L+L +GT+ D+V + ++ +G+ + Sbjct: 199 TIA---RAVLEDTA------------SEFLELAMIGTIGDMVKVSGEGHVIVKRGLEMLN 243 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 RPG++AL+ A + D+GF++ PRLNA GRL D S+ V LLL ++ GEA+ Sbjct: 244 ES-SRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGRLADASLAVRLLLAESPGEAQ 302 Query: 317 VLANELDALNQTRKEIEQG-MQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 LA++++ LN RK++ Q MQ + + + T L +Y P WH+GV+G++A+ Sbjct: 303 ELADQIEKLNNERKDLTQATMQAAEAQIKSRGYQKEAT----LTLYDPAWHEGVMGLVAN 358 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 +I E++H+P + G +KGSGRS QG ++ +AL+ + + +FGGH A GL Sbjct: 359 KIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKPFEG---KSITQFGGHDFACGL 415 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV------SDGPLSPAEMTMEVAQLLRDAG 489 S E+ ++ F + S GE DG +SP ++ + L AG Sbjct: 416 STTEENLNQLRRDFNQ--------SYKAGEKAPEKVQEYDGTISPLDVDLTSVYDLAQAG 467 Query: 490 PWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD--TALWPDNGV 547 P+G P+P+F LL + + P+ G +F V A+ D+G+ Sbjct: 468 PFGTDNPQPVF-----LLDRPQISNFR-----------PMRKGCSFMVGPVRAVDFDHGL 511 Query: 548 REVQLAY------KLDINEFRGNRSLQIII 571 + L Y KL N F+G ++Q I Sbjct: 512 NQTVLPYLQQMLVKLASNTFKGKTNVQFRI 541 >UniRef50_B1YJG2 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Exiguobacterium RepID=B1YJG2_EXIS2 Length = 769 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 186/523 (35%), Positives = 277/523 (52%), Gaps = 39/523 (7%) Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 K + + A EG I++ GD+D DG +S A+ A+ +G Y +PNRF +GYG + Sbjct: 68 KVITRIQQAADEGEMILIYGDYDVDGVSSAAILWHALIEVGAMAECY-IPNRFTEGYGPN 126 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHA---RSLGIPVIVTDHHLPGDTLPAAEAII 175 A G L++TVD GIS G+E A + LG+ +I+TDHH D LP A A+I Sbjct: 127 EAAFRWAAEEGFGLVITVDCGIS---GIEEAAVLKELGVDLIITDHHEAKDVLPDAFAMI 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P + D N+P LAG GVAF + AL +P ELLDL LGT+A Sbjct: 184 HPGV-DSNYPYSKLAGAGVAFKVAHALLG-------------RVPE--ELLDLAVLGTIA 227 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL NR+L +G+ + A + RPGI AL +V + +L +GFA GPR+NAAG Sbjct: 228 DLVPLIGENRLLAAKGIEALNASE-RPGILALRKVCSLVEDELTEESVGFAFGPRINAAG 286 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RLD + +LL + + EA LA +LD N+ R++I + + EA L E+ S Sbjct: 287 RLDSAMPALEMLLAETMEEAEPLAEQLDQQNKQRQDIVKKIAEEATALVEQHYLSDRV-- 344 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRDALER 414 L + +W+ GVVGI+ASR+ E++HRPVI A GT KGSGRSI + L + Sbjct: 345 --LVVDSDQWNPGVVGIVASRLVEKYHRPVILLCHDAEKGTAKGSGRSIAAFDLFAELNQ 402 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + P FGGH AAG++L + + ++R D + + + D L Sbjct: 403 TADILP----HFGGHPAAAGMTLSSENVPVLRERLNAQAASLPDEAFIATTEI-DLRLRV 457 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEP--LFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLD 531 +++++ + + + P+G P P + +G + R L++ HLKV+V G LD Sbjct: 458 SDVSIGLIEEMGRLSPFGMGNPSPRVVVEGANIRDLKRIGRDLTHLKVLV--TDGKTELD 515 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 GI F A+ + + EV L L+INE+ G R Q++I ++ Sbjct: 516 GIGFGFGDAVDEVSSLAEVSLMGSLNINEWNGFRKPQLMIQDL 558 >UniRef50_A8EWZ8 Single-stranded DNA-specific exonuclease n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EWZ8_ARCB4 Length = 522 Score = 254 bits (650), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 159/550 (28%), Positives = 289/550 (52%), Gaps = 39/550 (7%) Query: 28 RLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATS 87 RL+ R + + P ++ A + + A E I +VGD+D DG S Sbjct: 8 RLFELLSARHVNNPYSKLADIPPPTSFKDIDIATKRIKKAILENETITIVGDYDVDGIVS 67 Query: 88 TALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVE 147 T + + + + +++++PNRFE GYGLS ++VD +G L++TVDNGIS++ Sbjct: 68 TTIMLDFFKQINIK-VNHIIPNRFEHGYGLSTKIVDLIE-KG--LVITVDNGISAYEASL 123 Query: 148 HARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLR 207 + I +I+TDHH G+ +P A AIINP +DC FP K + G VA+YL A++ Sbjct: 124 KLKEKNIDLIITDHHTVGEKIPEALAIINPKQKDCTFPFKDICGAQVAWYLCAAIKK--- 180 Query: 208 DQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKAL 267 E N+ + N+++ LDL+ + +AD++P+ A N +T QG+ ++++ R K L Sbjct: 181 ------EMNLNV-NMSDYLDLLCIAIIADIMPMTALNYTITKQGLKKLKSS-SREAFKLL 232 Query: 268 LEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQ 327 + ++++ L + D+GF + P+LN+AGR+DD ++ + LL ++ A + LD LN Sbjct: 233 NSILSKES--LISDDIGFFIAPKLNSAGRMDDATIALDFLLSEDSFSANESLSLLDELNN 290 Query: 328 TRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIA 387 RK +++ + +A K++++++ + ++ WH+GV+GI+AS++ + +P Sbjct: 291 YRKTLQEDISNKANL---KIDKNKN----AIIVWDENWHEGVIGIVASKLSNLYKKPAFI 343 Query: 388 FAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQ 447 F + KGS R+ +++ + + + L G FGGH AAGLSL+ + + F++ Sbjct: 344 FTVQENDIAKGSVRANSNINLYELISKASHLLIG----FGGHKNAAGLSLKLENIEEFEK 399 Query: 448 RFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRL 506 E + + D L E+ + G L + + +E ++ P+G P+F + L Sbjct: 400 IINEELENFKDD--LHIEIDTLGELDVSSVDLEFLSIIEGFEPYGLENHRPIFKISNVNL 457 Query: 507 LQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGN 564 ++ L+G + HLK+ ++ G + + I FN P+ + L + NEF+G Sbjct: 458 VKYDLIGRDKNHLKLTLD--SNGVIFEAIKFNDSNKNIPN----ILNLIVSVAKNEFKGV 511 Query: 565 RSLQIIIDNI 574 + Q +I I Sbjct: 512 ITPQFLIQEI 521 >UniRef50_D2RLC4 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLC4_ACIFE Length = 782 Score = 254 bits (650), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 184/563 (32%), Positives = 297/563 (52%), Gaps = 34/563 (6%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGML-PWQ---QLSGVEKAVEILYNAFREGTRIIVV 77 + PLL + R + ++++ ++G P+ +L +++AV+ + A ++G + + Sbjct: 26 ISPLLAGILVRRDLTEPEKVKEFLEGKTQPYYDPFRLKDMDRAVDRILQALQQGEPMTIY 85 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG ++++L L +++ G + +D VP R +GYGL+ +++ ARG +L++TVD Sbjct: 86 GDYDVDGTSASSLLYLFLQARG-AKVDVYVPRRDREGYGLNGPALEKIAARGTKLLITVD 144 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 GIS V A G+ +I+TDHHL LP A A++NPN +P K +AGVGVAF Sbjct: 145 TGISGAQVVADAPK-GLDIIITDHHLAPRQLPPALAVVNPNQPGDEYPFKGIAGVGVAFK 203 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLA--ELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 L AL ++R P+L EL++LVALGTVAD+VPL NR + +G++R+ Sbjct: 204 LCQAL----------EQRRTGQPDLYWDELIELVALGTVADMVPLQDENREIVRKGLARM 253 Query: 256 RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 PG++AL+ V + + +GF LGPR+NAAGRLDD V LL + A Sbjct: 254 PHSPL-PGLQALIHVTVAPGSAINSGTIGFGLGPRINAAGRLDDAMTAVKLLTARDPETA 312 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 + LA EL++ NQ R+ + Q + EA E+ + L + WH GV+GI+AS Sbjct: 313 KELAEELNSANQERQALSQKIFEEA----ERQLAKQGPPEWSLVLGEEGWHPGVIGIVAS 368 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 R+ E++H P + + G+ T KGS RSI L + AL+R +++FGGHA AAGL Sbjct: 369 RMTEKYHLPSVLLSIDGE-TAKGSCRSIPPLDLYQALDRCRD----HLVQFGGHAQAAGL 423 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL-SPAEMTMEVAQLLRDAGPWGQM 494 ++ + F++ F +V E LD + V D + E+T E L P+G Sbjct: 424 TIRTAEIPAFREAFARVVAEMLDHKPYEPAAVPDWFVPEDREITPEAVAQLAQMEPFGVG 483 Query: 495 FPEPLFDGHFRLLQQ-RLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQ 551 P P+ +Q+ L+G HLK +++ GG G+ + Sbjct: 484 NPAPVLGFAKAQIQEVSLLGRDHNHLKFLLK--QGGFRYKGLLWQEGPRFHSFYPGEVAA 541 Query: 552 LAYKLDINEFRGNRSLQIIIDNI 574 +A+ +N FRG ++ + + + Sbjct: 542 VAFSPRVNTFRGVTAVDLEVSAV 564 >UniRef50_A5MZ56 RecJ n=30 Tax=Clostridium RepID=A5MZ56_CLOK5 Length = 595 Score = 254 bits (649), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 179/610 (29%), Positives = 307/610 (50%), Gaps = 64/610 (10%) Query: 1 MKQQIQLRRREVD-ETADLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLS 55 MK++ L+R D + A + ++ + A+RG+ +E L SV + + Sbjct: 1 MKRRWMLKRCNKDVKYISKKAGISEIMATILANRGIVEEKEIRDFLNPSVDNLQDPLSMK 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 +EK +I+Y A + I + GD+D DG ST + + G + + Y +P+R E+GY Sbjct: 61 DMEKGTDIIYKAIMDNKNIAIYGDYDVDGVMSTYILYCGLLKCG-AKVKYHIPDRIEEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHL-------PGDT- 167 G++ + +++ G ++I+T DNGIS+ A V+ A+ LGI V++TDHH G+ Sbjct: 120 GINIKSIEKLKEEGCEVIITCDNGISALAQVKRAKELGIAVVITDHHHIFFEERENGEKT 179 Query: 168 --LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAEL 225 +P A+A+I+P DC++P K L G GVAF + Q + + N + Sbjct: 180 YLIPEADAVIDPKQEDCSYPFKHLCGAGVAFKFI---------QVLYKKFNFKKEQCYKF 230 Query: 226 LDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGF 285 + A+GT+ D+V L NRI+ +G+ I + G+KAL+E + + + + +GF Sbjct: 231 IQYAAIGTICDIVDLIDENRIIVKKGLDMINNTE-NLGLKALIEETSLKGKNITSYHIGF 289 Query: 286 ALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEAL-TLC 344 +GP +NA GRL + + LLLC + +A LA +L LN R Q M +++L + Sbjct: 290 IIGPCINATGRLKSAVLALELLLCKDAEKAGKLAKKLHELNIQR----QDMTVKSLNNII 345 Query: 345 EKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQ 404 +K+E S L +Y E H+ + GI+A R+K+R++ P I +G KGSGRSI+ Sbjct: 346 DKVENSNLKRDKVLVVYEKETHESIAGIVAGRLKDRYNVPSIVIT-SGRIMSKGSGRSIE 404 Query: 405 GLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGE---LVTEWLDPSL 461 G +M + L + L M KFGGH +AAGLS+ E+ ++ + L E L P Sbjct: 405 GYNMFEELVKCKEL----MEKFGGHPLAAGLSITEENINRLRENLNKNCNLTEEDLIP-- 458 Query: 462 LQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERH--LK 518 ++ D L ++ V + ++ P+G+ PLF + + + + +G+ LK Sbjct: 459 ---KIRIDKKLPLENISFHVLEDIKKLEPFGKGNSTPLFGEKNIDVFKIYFMGKDKNVLK 515 Query: 519 VMVEPVGGGPLLDGIAFN-------VDTALWPDNGVREV----QLAYKLD------INEF 561 + +D IAF+ + ++ +G ++ + K+D INEF Sbjct: 516 LFCRLKNSLKKIDAIAFDGGEKFKKLILEVYGSSGANKIFNNNFTSLKMDFIFLPCINEF 575 Query: 562 RGNRSLQIII 571 G ++LQ++I Sbjct: 576 NGVKNLQLVI 585 >UniRef50_C8WA12 Single-stranded-DNA-specific exonuclease RecJ n=4 Tax=Coriobacteriaceae RepID=C8WA12_ATOPD Length = 1120 Score = 254 bits (648), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 175/490 (35%), Positives = 264/490 (53%), Gaps = 39/490 (7%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLP--W---QQLSGVEKAVEILYNAFREGTRIIV 76 + PL+ R+ +RG E + + L W Q + G+ + + A E +I V Sbjct: 29 VTPLVARVLVARGFTDVAEAQEFLSPSLQRDWLDPQCIPGMAEVANRVQKAIVEQQKIAV 88 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHA-RGAQLIVT 135 GDFD DG +ST L LA+R LG + Y +P+RF +GYGLS E + + R LI+T Sbjct: 89 FGDFDVDGMSSTCLLTLALRRLGADVLPY-IPHRFGEGYGLSKEALARVLLDRKPDLIIT 147 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL-RDCNFPSKSLAGVGV 194 VDNGI++ V GI V++TDHH P D +P + +P L DC PS+ LAG GV Sbjct: 148 VDNGIAAAQEVAWLLEQGIDVVITDHHEPADLVPQGVPVTDPKLIEDC--PSRELAGAGV 205 Query: 195 AFYLMLALRTFLRD-QGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMS 253 A L+ L Q W D +D+ LGT++D++ L+ NR L +G+ Sbjct: 206 ALKLVQVLGQLQNQPQLWLD-----------YIDVAMLGTLSDMMMLNKENRALVSEGVK 254 Query: 254 RIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIG 313 R++ G RPG+ AL VA +D +++A +L F++ PRLNAAGR+ + + LLL ++ Sbjct: 255 RLQKG-LRPGLVALAAVAGQDIAQISADNLPFSIIPRLNAAGRMGTTDIALDLLLTEDAE 313 Query: 314 EARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE--WHQGVVG 371 EA +LA +L+ +N R+ IE + EA LE++++ GG A+ + WH+GV G Sbjct: 314 EATILAGKLEEINAERRAIEAKLTDEA------LEQAKEIYDGGHAIVLAKEGWHEGVKG 367 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 I+ASRI R+H P I F DG +GSGRS+ + + A+E+ L ++FGGH Sbjct: 368 IVASRIVNRYHVPCILFT-IQDGVARGSGRSVGSVDLFHAVEQCADL----TVRFGGHQG 422 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSL-LQGEVVSDGPLSPAEMTMEVAQLLRDAGP 490 A G+++E K F++R E++ E + GEV + L E+T+ L P Sbjct: 423 AVGVTVETSKIDAFRKRLSEVMAELPEEEFESSGEVTALVNLD--EITINSIDALEALQP 480 Query: 491 WGQMFPEPLF 500 +GQ +PLF Sbjct: 481 FGQGNKKPLF 490 >UniRef50_A8SN06 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SN06_9FIRM Length = 581 Score = 254 bits (648), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 178/550 (32%), Positives = 273/550 (49%), Gaps = 56/550 (10%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLG--CSNIDYLVPNRF 111 + ++ A+EIL +A I +VGD+D DG +ST V+ M+ +G NI + +P+R Sbjct: 58 MKDLDTAIEILVDAIDNNLHIQIVGDYDQDGNSST---VVLMKGIGFFTDNISFSIPHRI 114 Query: 112 EDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP------G 165 EDGYG+S +VD A LI+T DNGIS+ E+ S+ I +I+TDHH Sbjct: 115 EDGYGISKGIVDNAKKNNVDLIITCDNGISAFEVAEYCNSMNIQMIITDHHQVCFDDKGN 174 Query: 166 DTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAEL 225 LP A+AIINP+ DC +P K L G GVAF LM AL FDE L +L Sbjct: 175 QILPKAKAIINPHRIDCEYPFKELCGAGVAFKLMQAL---------FDELGGDENYLIDL 225 Query: 226 LDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGF 285 L V++GTV DVV L NR +G+ + + K GI L + K+ + LGF Sbjct: 226 LQFVSMGTVCDVVDLVDENRFFVKKGLEILNSSK-NIGINKL--KTENEIGKITTTSLGF 282 Query: 286 ALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCE 345 LGP +NAAGRL+ S+GV L L ++ A A +L LN+ RK + + Sbjct: 283 KLGPCINAAGRLESASIGVELFLEEDENLADNYAKKLIELNEKRKNLTNEAYSRVNLKIK 342 Query: 346 KLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG-DGTLKGSGRSIQ 404 + E D + + +Y E H+ + GI+A RIK+ +++P + F+ A +G LKGS RSI+ Sbjct: 343 ENEYFNDDI---IVIYDNEIHESIAGIVAGRIKDHYYKPTLVFSNAKEEGILKGSARSIE 399 Query: 405 GLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFG---ELVTEWLDPSL 461 G + L L+ K GGHAMAAG S++++ + ELV E + Sbjct: 400 GYDIISKLRDFSNLFE----KLGGHAMAAGFSIKKENLDTLRNELNKNSELVLE----NF 451 Query: 462 LQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVM 520 ++ ++ D L + + L+ P+G+ PEPLF + + ++G+ + Sbjct: 452 IE-KIKIDCSLDFKLLNYNIVDELKLLEPYGKANPEPLFGTKNVEIKCISIIGKNKNVIK 510 Query: 521 VEPVGGGPLLDGIAF-NVDTAL------WPDNGV---------REVQLAYKLDINEFRGN 564 + GI F N D + + N + + + + Y INE+ Sbjct: 511 LVLSQDSIEFSGIIFTNFDKYIEYLNEKFKTNDIISKQDNIKNKFIDILYTPVINEYMNT 570 Query: 565 RSLQIIIDNI 574 +S+Q++I +I Sbjct: 571 KSIQLLIKDI 580 >UniRef50_C5B4H2 Single-stranded-DNA-specific exonuclease protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4H2_METEA Length = 614 Score = 254 bits (648), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 183/561 (32%), Positives = 289/561 (51%), Gaps = 35/561 (6%) Query: 25 LLRRLYASRGVRSAQELERSVKGMLPWQ-----QLSGVEKAVEILYNAFREGTRIIVVGD 79 L +++ RGV + LE K ML L+ ++ A + A R G + ++GD Sbjct: 70 LPKQIALMRGV-APSALETFFKPMLRTSMPDPSSLADMDAATARIAEAVRRGETVGLLGD 128 Query: 80 FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139 +D DGATSTA+ + + S G Y +P+R +GYG +P VD GA L++ +D+G Sbjct: 129 YDVDGATSTAIMLRWLGSAGHDKAVYYIPDRIREGYGPNPGAVDAIAEAGATLLLVLDSG 188 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI-INPNLRDCNFPSKSLAGVGVAFYL 198 +H + HAR+ G+ V+V DHH P TLP +AI +NP D +L G+AF L Sbjct: 189 TLAHGPIAHARARGMDVVVVDHHEPSRTLPLPDAILVNPKRPDDASGQTNLCTAGLAFLL 248 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 ++L LR +G+FD+ IA P+ +LL L ALGTVADVVPL NR + QG+ ++ Sbjct: 249 AVSLNRLLRAEGYFDQAGIAPPDPMDLLGLAALGTVADVVPLTGLNRAIVVQGLPKL--- 305 Query: 259 KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVL 318 PGI+AL+E + GF GP +NAAGR+DD +G LL D+ GE R L Sbjct: 306 DRNPGIRALVEETGEG--EFTPRTAGFVFGPCINAAGRIDDTRLGTLLLASDDPGETRDL 363 Query: 319 ANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIK 378 A L +N R+ +++ M A+ E + D + + + WH G+VG++A+R++ Sbjct: 364 ARHLREINAQRQAMQKEMVEAAVARALSAEFADDPV---IVIEDRAWHPGIVGLVAARVR 420 Query: 379 ERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLE 438 E +P + G KGS RS+ G M A+ R G+++ GGH MAAGL++E Sbjct: 421 EATDKPAVVVGEFG----KGSCRSVDGFDMGTAIIR--AREQGILIAGGGHRMAAGLTIE 474 Query: 439 EDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEP 498 + + ++ ++ P + +VV++ ++E L P+G +P Sbjct: 475 AGRLEELRRFVCGAAFDFERPP-TEVDVVAEA----GTASVEAIAPLEALAPYGAGNQQP 529 Query: 499 ---LFDGHFRLLQQRLVGERHLKVMVEPVGGGP---LLDGIAFNVDTALWPDNGVREVQL 552 + G R + R++ ERHLK+M+E G L + + + AL G+ V + Sbjct: 530 AVAVVGGIAR--RVRILKERHLKLMLEGPSGSTEAILFNAVGTRLGDALAASEGL-PVDV 586 Query: 553 AYKLDINEFRGNRSLQIIIDN 573 ++ ++EF +QI ID+ Sbjct: 587 LGRMAVDEFNAQARVQIKIDD 607 >UniRef50_Q1QT56 Exonuclease RecJ n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QT56_CHRSD Length = 599 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 189/555 (34%), Positives = 278/555 (50%), Gaps = 37/555 (6%) Query: 44 SVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLG---- 99 S++ + ++L +A E + A EG I ++ D+D DG TS V+ +R+L Sbjct: 60 SLRYLTHPERLQDARRAAERIAQAVAEGEHIGILTDYDVDGITS---HVVILRTLNELFG 116 Query: 100 --CSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQ--LIVTVDNGISSHAGVEHARSLGIP 155 + L+ +R DGYG+S +V++ A + L++T D G S + G+ Sbjct: 117 VPLHKLHSLIGHRIFDGYGISLPLVERTLALSPRPSLVITADCGSSDEPRIARLHEAGLD 176 Query: 156 VIVTDHH-LPGDTLPA-AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFD 213 V+VTDHH LP PA A A +NP DC++P ++AG VA+ M R+ L +QG Sbjct: 177 VVVTDHHALPASGPPASAYATVNPTRADCDYPDPTIAGCMVAWLTMSLTRSVLIEQGVA- 235 Query: 214 ERNIAIPNLAELLDLVALGTVADVVPL--DANNRILTWQGMSRIR--AGKCRPGIKALLE 269 + + P L+ L VALGTVAD V L NR + G++ I C + + E Sbjct: 236 --SPSTPKLSPWLSYVALGTVADCVSLGDSPANRAVVSHGLTLINRMEAAC---WRVMAE 290 Query: 270 VANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTR 329 D+ A L F +GPR+NA RLDD + +L + AR LD NQ+R Sbjct: 291 RLGTDSVPFDAETLAFQMGPRINARSRLDDPYAALHFMLAADDATARRHLEVLDTDNQSR 350 Query: 330 KEIEQGMQIEALTLC-EKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAF 388 K IE M A +L E L + ++ + H GV GI+ASR+ + F RP + Sbjct: 351 KAIESDMVERARSLALEALAEG----ASAIVVFLEDGHAGVQGIVASRLVQAFGRPTLVL 406 Query: 389 APAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQ 447 PA G L GSGRSI+GLH+RDAL+R L P + +FGGH AAG+ + ++ F+ Sbjct: 407 TPAAAAGMLTGSGRSIEGLHLRDALQRAHELAPEALPRFGGHRGAAGVGVPRERLTAFRD 466 Query: 448 RFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLL 507 F V E L L V++DG L PA++++ L P+G+ F PLF+G FR+ Sbjct: 467 AFLTAVEEQLGGRDLFPYVLTDGALEPAQLSLASVDELARLAPYGREFDAPLFEGEFRIE 526 Query: 508 QQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT-----ALWPDNGVREVQLAYKLDINEFR 562 Q R VG +M+E G I F T A P + + AYKL N ++ Sbjct: 527 QLRAVGADGNHLMLELSMGPVSHRAIWFRALTPGEVPAFGPGD---RLHCAYKLARNRWK 583 Query: 563 GNRSLQIIIDNIWPI 577 G SLQ++I++ P+ Sbjct: 584 GRESLQLMIEHAEPV 598 >UniRef50_C5RPJ0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Clostridium cellulovorans 743B RepID=C5RPJ0_CLOCL Length = 589 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 178/595 (29%), Positives = 300/595 (50%), Gaps = 75/595 (12%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREGTRIIVV 77 + P++ +L RG+R E+E+ +KG + + ++ A I+ A E +I++ Sbjct: 14 ISPIIAKLLWDRGIRDKDEVEKFLKGSIDEMYDPFLMKDMDLATSIIIKAIFEEKKIVIY 73 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG TST + A++ +G + + Y +P+R ++GYGL+ + ++ +G +I+TVD Sbjct: 74 GDYDVDGVTSTVIMFKALKRVG-ARVTYHIPDREKEGYGLNKKSIEVLREQGNSVIITVD 132 Query: 138 NGISSHAGVEHARSLGIPVIVTDHH-LP---------GDTLPAAEAIINPNLRDCNFPSK 187 NGI++ V++A+ +G V++TDHH LP + LP A+AIINP DCN+P K Sbjct: 133 NGIAAVEEVKYAKEIGFQVVITDHHDLPFEENEKGERKEILPNADAIINPKRSDCNYPFK 192 Query: 188 SLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRIL 247 L G +AF +AL F++ + + E E L + TV DVV L NR++ Sbjct: 193 YLCGASIAFKFAVAL--FIKRKIDYKEA------YNEYLQFAGIATVCDVVDLIDENRVI 244 Query: 248 TWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALL 307 + I K GI +L + ++++ +GF +GP +NA GRL++ + V LL Sbjct: 245 LKNALKSINNSK-NIGINSLRKFTLSLDKEISVYAIGFVMGPCINATGRLENAKMAVELL 303 Query: 308 LCDNIGEARVLANELDALNQTRKEIEQGMQIEAL-TLCEKLERSRDTLPGGLAMYHPEWH 366 L + A LA EL LN+TR Q M E + + +++E L +Y P H Sbjct: 304 LTKELEIAENLAKELVDLNKTR----QDMTTEGVEKVVKEIELGDYYNDKVLVVYEPTIH 359 Query: 367 QGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKF 426 + + GI+A RI+E++++P I A +G +KGS RSI+ ++ + L + L + KF Sbjct: 360 ESIAGIIAGRIREKYNKPTIILTKAVEG-VKGSARSIEEYNIYEELLKCKNL----LDKF 414 Query: 427 GGHAMAAGLSLEEDKFKLFQQRFGE---LVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483 GGH MAAG+SL+E+ + ++ L E + P +VV D PLS ++ + Sbjct: 415 GGHPMAAGMSLKEENIEPLRETLNGKCILTDEDMIP-----KVVIDFPLSSHKIDDSIIY 469 Query: 484 LLRDAGPWGQMFPEPLFDGHFRLLQQRLV-----GERHLKVMVEPVGGGPLLDGIAFNVD 538 + + P+G+ PLF LL++ +V G L V+ G +D +AF Sbjct: 470 DIGELAPFGKGNSTPLFGDKNLLLEKAMVFGSDNGVLKLVFNVQ----GRRIDAVAFKKY 525 Query: 539 TAL-------WPDNGVRE-----------------VQLAYKLDINEFRGNRSLQI 569 L W ++ E + + Y + NE++GN+ +Q+ Sbjct: 526 LELMEIIEENWVNDNYGELLPYSTGYLINIPQDLRLDIIYTPEFNEYKGNKKIQL 580 >UniRef50_Q0C0S5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C0S5_HYPNA Length = 597 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 195/564 (34%), Positives = 287/564 (50%), Gaps = 35/564 (6%) Query: 25 LLRRLYASRGVR---SAQELERSVKGMLPWQQL-SGVEKAVEILYNAFREGTRIIVVGDF 80 L+ RL A RGV + L +++ + P L + ++KA I+ +A G R+ V D+ Sbjct: 46 LVARLLAGRGVTPETAPSYLAPTLRDLFPDPSLFADMDKAAGIILDAIVAGKRVCVFADY 105 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 D DG TS+A+ R+ G + VP+R E+GYG SPE A+G L++TVD G Sbjct: 106 DVDGGTSSAILARYFRAWG-RELGLYVPDRLEEGYGPSPEAFRWLKAQGYDLVITVDCGA 164 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 ++ ++ A S+ +PV+V DHHL LP A++NPN DC LA GV F Sbjct: 165 AAVRALDEAVSIDLPVVVLDHHLMSGHLPETAALVNPNRPDCTSGQGHLAAAGVVFVFAA 224 Query: 201 ALRTFLRDQGWFDERNIA----IPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 A+ R +RNIA +P++ LDL ALGT+ D+ PL NR QG++ + Sbjct: 225 AMNRLAR------QRNIAPPAGLPDILPYLDLCALGTLCDMSPLTGVNRAFVRQGLTIMS 278 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 G+ G++AL +V+ + + F LGPRLNA GR+ D + LL D+ GEA Sbjct: 279 RGE-NVGLRALADVSGI-GEIDSVYHATFLLGPRLNAGGRVGDPWLAAKLLATDDRGEAI 336 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEK-LERSRDTLPGGLAMYHPE-WHQGVVGILA 374 LA L LN R+ +E +Q EA E+ L + D G+ + E WH GV+GI+A Sbjct: 337 ALAERLHTLNDERRAVEAAIQDEATAQAERALAANPDR---GIIIAAGEGWHPGVIGIVA 393 Query: 375 SRIKERFHRPVIAFAPAGDG---TLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 R+K+RFH P I G+G KGSGRS+ G+++ DA+ G++L GGHAM Sbjct: 394 GRLKDRFHLPTIIIG-WGEGLGPVAKGSGRSVTGVNLGDAISA--AAREGIILSGGGHAM 450 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 A GLSLE + F + ++ ++ D LSP T ++ L+ GP+ Sbjct: 451 AGGLSLEPHQIAAFDDWMVAHMAQFTAERDAALDLHIDAVLSPGSATTDLYDLIAALGPF 510 Query: 492 GQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD---NGV 547 G PEP+F R +G HL+ E G ++ IA+ V D G Sbjct: 511 GMGAPEPVFAMTDVMPTGVRRIGANHLRFTAENNTG--RIECIAWRVADEPMGDLLRTGQ 568 Query: 548 REVQLAYKLDINEFRGNRSLQIII 571 R V LA +L +++ G R +Q+ I Sbjct: 569 R-VGLAGRLKSDQWNGRRRVQLEI 591 >UniRef50_Q5FGN3 Single-stranded-DNA-specific exonuclease recJ n=18 Tax=Rickettsiales RepID=Q5FGN3_EHRRG Length = 590 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 175/531 (32%), Positives = 282/531 (53%), Gaps = 31/531 (5%) Query: 50 PWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPN 109 P+ L ++KAV + +A I++ GD+D DGATS+AL + +G Y +P+ Sbjct: 76 PFHMLD-MDKAVYRICHAIHNRENIVIFGDYDVDGATSSALIKQYLSQIGVPTTIY-IPD 133 Query: 110 RFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLP 169 R +GYG + + + + G L +TVD G +H + A+S+ + VIV DHH+ +TLP Sbjct: 134 RICEGYGPNTQALLKLKEIGNSLCITVDCGTIAHEPISAAKSVNLDVIVIDHHIGINTLP 193 Query: 170 AAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLV 229 A A+INPN D P LAGVGV+F +++AL L++QG+F +N PNL LDLV Sbjct: 194 DAVAVINPNRLDETSPYTYLAGVGVSFLMLVALHKTLKEQGFF--KNNQEPNLINYLDLV 251 Query: 230 ALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGP 289 ALGTV DV+P+ NR QG+ +I + G+K L +V + +K LGF +GP Sbjct: 252 ALGTVCDVMPIIGLNRTFVKQGL-KIMTTRQNLGLKTLSDVIGLE-EKPNIYQLGFNIGP 309 Query: 290 RLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLER 349 +NA GR+ + S+G LL +N EA ++ +L N RK +E EA+ E++E Sbjct: 310 HINAGGRVGNASLGARLLSTNNEEEALEISEKLQNFNLERKTLENQSFNEAV---EQIEA 366 Query: 350 SRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMR 409 + + + + WH G++GI+A R+K++F P I + +G K S RSI + + Sbjct: 367 T--IISSNIIIATGNWHPGIIGIVAGRLKDKFFLPSIVISLE-NGIGKASARSIPDVDLG 423 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQ----QRFGELVTEWLDPSLLQGE 465 A+ L G++++ GGHAMAAG S++E+K K+ Q+F + T + Sbjct: 424 AAILEAKAL--GIIIEGGGHAMAAGFSIQENKIKILHEFLSQKFHNINTRKV-------- 473 Query: 466 VVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPV 524 DG ++ + +++ + L+ P+G PEP F + R+ ++GE H++ ++ Sbjct: 474 FKVDGIVTAEAINLKLWKELQFLEPFGIGNPEPRFILTNIRIKNPEVIGESHIRCLI--Y 531 Query: 525 GGGPLLDGIAFNV--DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 + GI F L K+ IN +RGN ++Q II++ Sbjct: 532 DNKTFIKGICFRCIGTELGTTLLECTTTTLLGKISINYWRGNENIQFIIED 582 >UniRef50_D1N562 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N562_9BACT Length = 569 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 174/490 (35%), Positives = 269/490 (54%), Gaps = 25/490 (5%) Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 + G+++A L++A I++ GD+D DG T++AL L +R G + +P+RF+ Sbjct: 60 RFPGIQEASRRLWDAIAHKEPILIHGDYDTDGITASALLALVLRQNG-GIVHSFIPHRFD 118 Query: 113 DGYGLSPEVVDQAHAR--GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA 170 DGYG +PE + +A +++VTVD GI+S V A GI VIVTDHH G LP Sbjct: 119 DGYGFTPESLQKALDTFGPCKVLVTVDCGITSCDAVNDAVERGIDVIVTDHHEAGSELPK 178 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQ--GWFDERNIAIPNLAELLDL 228 A A+INP + + L+G G AF L A + R+ G F R L E+LD Sbjct: 179 ALAVINPKVYPELEDLQLLSGAGAAFKLSHAFIKYGREHNLGGFQTR------LEEVLDY 232 Query: 229 VALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALG 288 VALGTVAD+VPL NR++ G+ +R + RPG++AL+E +++ +L +D+ F L Sbjct: 233 VALGTVADIVPLLGENRVMVKFGIETLRK-QLRPGVRALIE-SSKLRSELTPADITFRLA 290 Query: 289 PRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLE 348 PR+NAAGR+ D +V + LL ++I EA A++L+ N+ R+E EQ + EA CE++E Sbjct: 291 PRINAAGRVGDANVALQLLESEHIVEAYQCASQLETYNRVRQEKEQEIYQEA---CEQIE 347 Query: 349 RSRD-TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLH 407 R+ L + +WHQGV+GI+ASR+ ++RP I GD GSGRSI L+ Sbjct: 348 RNLAWQSEYSLLVAGRDWHQGVIGIVASRLARDYNRPTIVLTIQGD-VAYGSGRSIACLN 406 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 + + L L + ++GGH MA G+ L+ D+ F + V + + + L+ + Sbjct: 407 LVEVLSHTSEL----LDRYGGHPMAVGIGLKADRIADFFEAMDREVRKQISSADLEDFIS 462 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGG 526 DG S E+T E + L P+G +P++ ++ + +VG H + + G Sbjct: 463 YDGEASLHELTPEFFKYLAMLSPFGHSNVKPIYRFNEVQVQRCSVVGGAHTRGTLRGRTG 522 Query: 527 GPLLDGIAFN 536 +D IAFN Sbjct: 523 Q--IDFIAFN 530 >UniRef50_A6LJS2 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LJS2_THEM4 Length = 977 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 169/510 (33%), Positives = 271/510 (53%), Gaps = 39/510 (7%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQ------- 53 MK +++ +E E ++P L +L SRG + + R + P + Sbjct: 1 MKWELKKIDKESSEKLAEELDIPLLTAQLLVSRGYVTPESAYRFIN---PSKNDLRSPFL 57 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L +++AV+ L A + I+V GD+D DG T A V + G + Y +PNR + Sbjct: 58 LKDMDRAVKYLLLARNKKYPILVYGDYDVDGITGVATLVTFLSKHGWK-VKYFIPNRLDV 116 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG+ PE+VD+ +G +L+++VD GI+S V+HAR LG+ V++TDHH +P A A Sbjct: 117 GYGIQPEIVDEYFKKGYRLLLSVDCGITSFDAVKHARELGMYVVITDHHTIKSGIPNAHA 176 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLM--LALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 +++P D +P K AGVGVA+ L+ LAL L D DE N ELLD+VAL Sbjct: 177 VVDPKREDETYPFKDFAGVGVAYKLISALALELGLPD----DEVN-------ELLDIVAL 225 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRL 291 GT+AD+V L NR + +G+ ++ + R G+ L++ N + + + D+G+ L P+L Sbjct: 226 GTIADMVDLVDENRYIVKEGLKKLNQTQ-RVGLVQLMKKLN--IKNITSQDIGYRLAPKL 282 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NAAGRL L+ +N+ A LA L N TR+EIE + EA+ K+E+S+ Sbjct: 283 NAAGRLYSAEDAYKLITTNNLSSAEQLAEILMGYNFTRQEIENKIFNEAVY---KIEKSK 339 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 L + +WH GV+GI+A+++ +++++P + + DG +GSGRS+ G+++ D Sbjct: 340 IKDLPILIVSGEKWHAGVLGIVATKLVQKYNKPSLVIS-LEDGMGRGSGRSVDGVNIFDV 398 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSL-LQGEVVSDG 470 L + + GGH MA G S+ E+K + + E++D + ++ D Sbjct: 399 LSSFSRYFEEI----GGHPMAVGFSIREEK---IDELIDVISKEFVDSHFEVDSKIEIDT 451 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLF 500 L E+ EV L P+G PEP+F Sbjct: 452 VLDIDEVNDEVINSLSYLEPFGHGNPEPVF 481 >UniRef50_C5QT22 Recombination protein RecJ n=2 Tax=Staphylococcus RepID=C5QT22_STAEP Length = 762 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 182/578 (31%), Positives = 298/578 (51%), Gaps = 56/578 (9%) Query: 15 TADLPAEL--PPLLRRLYASRGVRSAQELERSVKGML----PWQQLSGVEKAVEILYNAF 68 T +L EL P+++++ S+ + + ++ ++ + PW LS ++KAV+ + A Sbjct: 23 TEELAKELKLSPIVKKVLESKNLVQEEMIQDVLQDKIINHDPWA-LSDMQKAVDRINLAI 81 Query: 69 REGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR 128 + RI+V GD+DADG TST + V + LG + + +PNRF +GYG + A+ Sbjct: 82 DKSERILVYGDYDADGVTSTTILVNTLSQLGAQ-VGWYIPNRFSEGYGPNALAFQNAYEE 140 Query: 129 GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKS 188 G LI+TVDNGI H ++ + LG+ VIVTDHH G TLP A AI++P + ++P + Sbjct: 141 GTSLIITVDNGIQGHEEIKMVQDLGVDVIVTDHHEIGRTLPEAYAIVHPMHPEFSYPFQY 200 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 L G GVA+ L AL I+ P + L L A+GT+AD+V L NR + Sbjct: 201 LCGAGVAYKLAQAL--------------ISHPP-QQFLALAAIGTIADLVSLTDENRSIV 245 Query: 249 WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 308 QG++ I I+A+L+ A + + +GF +GPRLNA GRL+D S+ LL+ Sbjct: 246 KQGLN-ILNNNAPVSIQAILKQAGYN-DNINEETIGFIIGPRLNAVGRLEDASLAAELLM 303 Query: 309 CDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQG 368 + I EA LA +++ NQ RK+I + EAL L E+ + L + WH+G Sbjct: 304 SEEIEEAEFLAEQVEHFNQERKDIVSEITEEALALAEEQVQQGHLF---LLLAKENWHEG 360 Query: 369 VVGILASRIKERFHRPVIAF-APAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 V+GI+AS++ E + P + KGS RSI + M + L + ++ KFG Sbjct: 361 VLGIVASKVVETYALPTLILNIDLEQNHAKGSARSIDQVSMFEIL----NAHQDLISKFG 416 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRD 487 GH MAAG++++ + ++ + + + + + L+ D L E++++ + ++ Sbjct: 417 GHHMAAGMTMDIENIDELRKGLNDWMRQLAETTSLEPRKHVDVLLDEREISVKNIRDIQR 476 Query: 488 AGPWGQMFPEPLFD-GHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALWPD 544 P+G F P F+ + + +G+ +HLK+ + N AL+ Sbjct: 477 LRPFGTDFNSPTFELKDLNVQSIKAIGQDGKHLKL------------SLGENQIAALYWS 524 Query: 545 NGV--------REVQLAYKLDINEFRGNRSLQIIIDNI 574 NG + V L +L INE+ GN+S Q+II +I Sbjct: 525 NGHLANELEIGQPVNLIGQLQINEWNGNQSPQLIIQDI 562 >UniRef50_C3WCZ7 Single-stranded-DNA-specific exonuclease recJ n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WCZ7_FUSMR Length = 853 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 167/483 (34%), Positives = 255/483 (52%), Gaps = 28/483 (5%) Query: 25 LLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREGTRIIVVGDF 80 +L LY +R +R +++ + + L L V++AVE + A + + GD+ Sbjct: 25 ILNLLY-NRDIRDEEKIYKFINTSLDNIHSPLLLKDVDRAVERILQAKENKEEVWIYGDY 83 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 D DG TST+L LA+ +G + Y +P R ++GYGL+ E +D ++G ++I+TVD GI Sbjct: 84 DVDGITSTSLCYLALSEIGITP-RYYIPLR-DEGYGLNKEAMDYIKSQGGKVIITVDCGI 141 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 S+H +E+A SLG+ +IVTDHH + P A A+INP D FP K +AGVG AF L+ Sbjct: 142 SAHPEIEYANSLGLEIIVTDHHEINNGNPPAYAVINPKREDNQFPFKYMAGVGTAFMLIY 201 Query: 201 ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKC 260 AL L + L + LD+VA+GTVAD+VPL NRI T GM ++ Sbjct: 202 ALFDKLEKK----------EELYKYLDIVAIGTVADIVPLLEENRIFTKFGMEQLNKSHW 251 Query: 261 RPGIKALLEVANRD--AQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVL 318 GI L++ D +K D+GF + P NAAGRL+D V L + + + Sbjct: 252 L-GISMLIKKIFEDYKTKKFNTYDIGFIIAPIFNAAGRLEDAKRAVELFIEKDHRVCSEI 310 Query: 319 ANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIK 378 NEL N RKEI++ + AL E + D++ L + +H GV+GI+AS+I Sbjct: 311 INELLNNNTERKEIQEMILERALFKIENEKLFEDSV---LVVAEEGFHHGVIGIVASKIL 367 Query: 379 ERFHRPVIAFAPAGDGTL-KGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 +R+++P I D + S RSI+G +M +AL + L+ +K+GGHA AAG S+ Sbjct: 368 DRYYKPTIIMEIKPDERIATASCRSIEGFNMIEALNTMKELF----VKYGGHAGAAGFSI 423 Query: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 + + F +R E E + S L V D + +++ + + P+G P Sbjct: 424 KIENINEFSKRINEYAKENIPESSLIKPVKLDITIPAYKISYDFIDKISLLEPFGFGNPS 483 Query: 498 PLF 500 PLF Sbjct: 484 PLF 486 >UniRef50_B0NCG3 Putative uncharacterized protein n=9 Tax=Clostridiales RepID=B0NCG3_EUBSP Length = 586 Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 186/604 (30%), Positives = 312/604 (51%), Gaps = 55/604 (9%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRS----AQELERSVKGMLPWQQLSG 56 M+Q + LR+ E ++ P L L +R V AQ L ++ + + Sbjct: 1 MEQWVLLRKGADFEGIGKRFQISPRLACLIRNRDVIGDEAIAQYLNGTIADLYDGMLMKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV+IL E RI V+GD+D DG +T + + + LG + D +P+R +DGYG Sbjct: 61 MDKAVDILREKIAEQKRIRVIGDYDIDGVNATYILLEGLEKLG-AEADSDIPSRMKDGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH-LPGDT-------- 167 L+ E++++A+ G I+T DNGI++ + + LG+ ++VTDHH +P + Sbjct: 120 LNIELIERAYQDGIDTIITCDNGIAAAEEIACGKRLGMTIVVTDHHEVPFEEEEDGKKYL 179 Query: 168 LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLD 227 LP A+A+I+P C +P K L G +A+ L+ AL W A +L L++ Sbjct: 180 LPPADAVIDPKQPGCEYPFKGLCGAAIAYKLVEAL--------WEATGGDA-EDLDYLIE 230 Query: 228 LVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFAL 287 VA+ TV DV+ L+ NRI +G+ ++ PG+++L+ D ++ A +GF L Sbjct: 231 NVAIATVGDVMELENENRIFVKEGLQMLKRTH-SPGLRSLIACTGVDKDRIGAYHIGFVL 289 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 GP +NA+GRLD + LL + EA +LA +L ALN +RKE+ +A + + Sbjct: 290 GPCMNASGRLDTAKRTLNLLRAKSGKEADILAGDLKALNDSRKEMTDIAVEQARQIVDTT 349 Query: 348 ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLH 407 + +D + L +Y P H+ + GI+A RI+ER++RP I A +G +KGSGRSI+ + Sbjct: 350 KAGKDRV---LVLYLPGCHESLAGIVAGRIRERYYRPAIILTDAEEG-IKGSGRSIEAYN 405 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 M + L R L + KFGGH +AAG+SL ++ + ++ + L+P + +VV Sbjct: 406 MYEELSRCRDL----LTKFGGHKLAAGMSLAKENIEELRRTLNDNCR--LEPKDMAEKVV 459 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERH--LKVMVEPV 524 D L + +T E+ + L P+G+ +P+F + L+ R++G+ LK+ V+ Sbjct: 460 IDMELPFSCVTEELVEELTLLEPFGKGNTKPVFAARNVELISGRILGKNRNVLKLQVKD- 518 Query: 525 GGGPLLDGIAFN-----------------VDTALWPDNGVREVQLAYKLDINEFRGNRSL 567 + + F VD + G ++ + Y DINE+ G R++ Sbjct: 519 SSQTAREAVCFRGAEQMLSLLEERYGKEAVDLLMKGRGGQMKLSVTYYPDINEYMGKRTV 578 Query: 568 QIII 571 QI+I Sbjct: 579 QIVI 582 >UniRef50_C8NEZ1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Granulicatella RepID=C8NEZ1_9LACT Length = 771 Score = 251 bits (641), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 183/560 (32%), Positives = 291/560 (51%), Gaps = 40/560 (7%) Query: 26 LRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREGTRIIVVGDFD 81 L RL RG+++A+EL+ + L ++KAV + A G I + GD+D Sbjct: 32 LVRLCVERGIQTAEELQEFLSPTPHLIHDPFLLHDMDKAVGRIQEAIENGELIHIYGDYD 91 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 ADG TST + + LG + + Y +PNRF DGYG + + G LI+TVD GI+ Sbjct: 92 ADGITSTTILYETLEMLG-AQVSYYLPNRFTDGYGPNTPAFQRVIEEGHTLIITVDCGIA 150 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLA 201 +H + +A G VI+TDHH +P A A+++P + N+P L+G GVAF L A Sbjct: 151 AHEPIRYAMENGCDVILTDHHEIPSEIPEAYAVVHPRHPEANYPCGDLSGAGVAFKLAHA 210 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 261 L G F E E+++L A+GT+AD+V L NR + G+++++ + R Sbjct: 211 LL------GEFPE---------EMVELAAIGTIADLVSLTDENRTIAKLGIAQMKQTQ-R 254 Query: 262 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 321 G+ +LLE + KL +GF +GPRLNA GRL D + GV LL + EA+ + + Sbjct: 255 IGLVSLLEKLSVKMDKLDEKTIGFQIGPRLNALGRLGDATPGVQLLTTFDDEEAQSIVDF 314 Query: 322 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 381 + + N+ R+ I + EA + + E+ + L + P WH+GV+GI+ASRI E+ Sbjct: 315 MQSENERRQAIVNQIVEEATPIIQ--EQMNQPI---LVLAQPGWHEGVLGIVASRIVEQT 369 Query: 382 HRPVIAFAPAGDG-TLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEED 440 +P + + DG T KGSGRS ++ DAL T +LKFGGH MAAGL++E Sbjct: 370 GKPTLVLGISDDGLTAKGSGRSFGEFNLYDAL----TSVKDHLLKFGGHHMAAGLTVETI 425 Query: 441 KFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF 500 + + D + + D L ++T+E + L P+G PEP+ Sbjct: 426 MLPTIIDGLEQYAKDHQDLLDAKATLTIDEVLPLKDITVEWIESLASLKPFGTDNPEPIV 485 Query: 501 DGH-FRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVD---TALWPDNGVREVQLAY 554 ++ +L+G ++HLK+ ++ L +AF+ +L PD ++ +A Sbjct: 486 SLEGIQVASTQLLGADKKHLKLHLKEDNSTYTLQAMAFSKGEWAASLQPDT---KISIAG 542 Query: 555 KLDINEFRGNRSLQIIIDNI 574 L+INE++ NR Q+++ +I Sbjct: 543 TLEINEWQNNRLPQLMVKDI 562 >UniRef50_B9L7S0 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Nautiliaceae RepID=B9L7S0_NAUPA Length = 520 Score = 251 bits (640), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 178/559 (31%), Positives = 291/559 (52%), Gaps = 64/559 (11%) Query: 33 RGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSV 92 R + S + E S + + LS ++KA + + NA + +I+VVGD+D DG +S+A+ Sbjct: 8 REILSNRIEELSSSNLPHFLLLSDIKKASKRVVNAIKNKEKIVVVGDYDVDGVSSSAIMK 67 Query: 93 LAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSL 152 L + +I+ ++P+RF+DGYGL+P ++++ A LI+TVDNGI+S E + Sbjct: 68 LFFEKIKF-DIEVVIPDRFKDGYGLTPGLLERIEA---DLIITVDNGITSFEAAEICKQK 123 Query: 153 GIPVIVTDHHLP--------------GDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 + +I+TDHH P LP A AIINP +FP K + G VA+YL Sbjct: 124 RVDLIITDHHTPLIMDKVKCNMENEERFKLPDAYAIINPKTSP-DFPFKEICGAEVAWYL 182 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 A+++ E + I +L E D++A+ +ADV+PL NR L G+ R+ Sbjct: 183 CAAIKS---------EMKLKI-DLREFTDILAIAIIADVMPLTHMNRTLVNMGLKRLNKA 232 Query: 259 KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVL 318 +P KAL N+D A D+ F + PRLNAAGR+ V L+ N +A L Sbjct: 233 -VKPFSKALKRFFNKD---FKAEDIAFQIAPRLNAAGRMFHAGVAYEFLISKNEQKAFDL 288 Query: 319 ANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIK 378 ELD LN RKE E+ EA+ E++ + G ++H+GVVGI+ASR+ Sbjct: 289 LMELDGLNNLRKETEK----EAVESIEEITDDFIIVKG-------DFHEGVVGIIASRLV 337 Query: 379 ERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLE 438 ++ +P I F +G LKGSGRS+ + + + L G FGGH MA GLSL+ Sbjct: 338 HKYKKPAIVFCE-NNGILKGSGRSLGNIDIFSLVNECKELLEG----FGGHKMACGLSLK 392 Query: 439 EDKFKLFQQRFGELVTEW-LDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 E+ F+ ++ ++++ D ++ V+ + P E+ +E+ +L++ P+G+ P+ Sbjct: 393 EENFEELKKVLNNKISKYSKDDFFIEDYVLGELPFK--EIDIELLDILQEFEPFGEGNPK 450 Query: 498 PLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLD 557 P F + ++ + + E H K+++ +L + F + G + L +K Sbjct: 451 PKFIANAKIEHVQNLKENHFKLILSQ--DDIVLPAVIFRFE-------GEFKDSLYFKFS 501 Query: 558 INE--FRGNRSLQIIIDNI 574 INE + G RS+Q++I+ I Sbjct: 502 INENSYYG-RSVQLMIEEI 519 >UniRef50_C7XTQ6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XTQ6_9LACO Length = 769 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 186/561 (33%), Positives = 303/561 (54%), Gaps = 44/561 (7%) Query: 26 LRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREGTRIIVVGDFD 81 L L +RG +S E++ +K L Q L ++KAV + A ++G +I V GD+D Sbjct: 32 LANLLVARGFQSVHEVQLFLKPQLQQIQKPDRLHDMDKAVARITQAIKQGEQITVYGDYD 91 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 ADG T+TA+ + SLG + ++Y +P+RF+DGYG + + + G QL+VTVDNG++ Sbjct: 92 ADGMTATAVMFETLESLG-AKVNYYIPDRFKDGYGPNQDAYQRLITGGTQLLVTVDNGVT 150 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLA 201 V A G+ V++TDHH LP A AI++P + L+GVGVAF + A Sbjct: 151 GKKEVAFAHDQGVDVVITDHHSLPVELPNAVAIVHPQYPGDLYQYGDLSGVGVAFKVAWA 210 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 261 L G F ELLDLVA+G +AD+V + N +L G+ +++AG R Sbjct: 211 LL------GEFP---------TELLDLVAIGEIADLVSMAKENHVLVKFGIQQLQAG-LR 254 Query: 262 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 321 PGIKALL++A + L + D+ F L PRLNA GR+ + + GV LL + A LA + Sbjct: 255 PGIKALLKIAGVQEESLTSQDVSFKLAPRLNALGRIANGNEGVKLLTTVDEDAAEQLAKD 314 Query: 322 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 381 +D N+ R+++ + + EAL + + R L + +WHQGV+GI+ASR+ E+ Sbjct: 315 VDQCNRQRQDLVEQITQEALQKAQAPDNLRRRT---LLIVGHDWHQGVLGIVASRLVEKT 371 Query: 382 HRP-VIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEED 440 +P ++A G+ KGSGRS+ G + AL+ + ++ FGGH MA G+S Sbjct: 372 GKPTIVASVNHGELVAKGSGRSVDGYDLFAALDP----HRKLLTAFGGHVMACGMSFMIT 427 Query: 441 KFKLFQQRFGELV-TEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPL 499 + + + + LD + + ++ G L P E+T ++ Q ++ P+G EP+ Sbjct: 428 QVPAIAKVLEQAAEAQHLDAN-QKPRLMIAGTLQPDEITEKLYQQIQQLAPFGPDNEEPI 486 Query: 500 FDGHFRLL-QQRLVGE--RHLKVMVEPVGGGPLLDGIAF----NVDTALWPDNGVREVQL 552 F+ ++ +R +G+ HLK ++ G LD +AF NVD + GV ++L Sbjct: 487 FEITDPIITSKRQMGKNNEHLKFTLK--GTRQSLDVLAFGKGSNVD---FFSPGVH-LKL 540 Query: 553 AYKLDINEFRGNRSLQIIIDN 573 K+ +N ++G + Q+++++ Sbjct: 541 VGKVAVNSWQGRTTPQLLLED 561 >UniRef50_Q5HNR5 Single-stranded-DNA-specific exonuclease RecJ n=6 Tax=Staphylococcus RepID=Q5HNR5_STAEQ Length = 757 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 183/573 (31%), Positives = 293/573 (51%), Gaps = 42/573 (7%) Query: 12 VDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM---LPWQQLSGVEKAVEILYNAF 68 + E++ +L P+++++ S+ + QE++ +G + LS ++KA++ + A Sbjct: 17 ISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFEGTNISHDYMLLSDMQKAIDRIKLAI 76 Query: 69 REGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR 128 + RI+V GD+DADG TST + V +R LG + + +PNRF +GYG + A+ Sbjct: 77 DQNERILVYGDYDADGVTSTTILVSTLRLLGAQ-VGWYIPNRFTEGYGPNELAFKNAYDE 135 Query: 129 GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKS 188 G LI+TVDNGI H + + LG+ VIVTDHH G+TLP A AI++P + +P K Sbjct: 136 GISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAFAIVHPMHPNFEYPFKY 195 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 L G GVA+ L L I P + L A+GT+AD+V L NR + Sbjct: 196 LCGAGVAYKLAQGL--------------IEHPP-QHFIALAAIGTIADLVSLTDENRYIV 240 Query: 249 WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 308 QG+ +I IKA+L A + + + +GF +GPRLNA GRL+D S+ LLL Sbjct: 241 KQGL-KILNNHTPSSIKAILNQAGFNDE-ITEETIGFIIGPRLNAVGRLEDASLAAELLL 298 Query: 309 CDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQG 368 D EA LA +++ N RK+I + EAL L E+ + L + WH+G Sbjct: 299 SDEFEEAEFLAEQVEHFNHERKDIVSKITDEALLLAEEQIKQGHLF---LLLAKEGWHEG 355 Query: 369 VVGILASRIKERFHRPVIAF-APAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 V+GI+AS+I E + P + KGS RSI+ + M D L + ++ KFG Sbjct: 356 VLGIVASKIVETYALPTLILNIDENQNHAKGSARSIEQVSMFDILND----HQQLIDKFG 411 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRD 487 GH MAAG+++ D + + + E + L+ + D L E+ ++ + + Sbjct: 412 GHHMAAGMTMSIDNIEHLHKELDMWMKELTVTTSLEPSIKVDAQLEEKEINIKNIKDIFQ 471 Query: 488 AGPWGQMFPEPLFDGHFRLLQQ-RLVGE--RHLKVMVEPVGGGPLLDGIAFN---VDTAL 541 P+G F PLF +++ + +G+ +HLK+ + G L + +N + + L Sbjct: 472 LRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL----GHSGLTALFWNHGHLASEL 527 Query: 542 WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 P + + + L INE+ GN++ Q II +I Sbjct: 528 EPG---QPIHIIGTLQINEWNGNQTPQFIIKDI 557 >UniRef50_B5ZFU4 Single-stranded-DNA-specific exonuclease RecJ n=12 Tax=Acetobacteraceae RepID=B5ZFU4_GLUDA Length = 619 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 205/562 (36%), Positives = 292/562 (51%), Gaps = 31/562 (5%) Query: 25 LLRRLYASRGV--RSAQE-LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 ++ ++ A+RG+ RSA L+ +++ ++P L ++ A E L +A R G + V GD+ Sbjct: 67 IVGQMLAARGLDGRSAATFLDPTLRALMPDPSALRDMDPAAERLADAVRRGETVAVFGDY 126 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 D DGA + AL +R LGC + + VP+R +GYG + ++ ARGA L+V VD G Sbjct: 127 DVDGACAAALVTQLLRDLGCPVLTH-VPDRMTEGYGPNAPALEALAARGATLVVCVDCGT 185 Query: 141 SSH---AGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 ++ AG+ +IV DHH P A +NPN DC + L GVAF Sbjct: 186 AAGDILAGLAGRAD----IIVLDHHKAEGPPPPVLATVNPNRLDCTSGQRGLCAAGVAFL 241 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 +A LR GWF R P+L LD+VAL TV DV+PL NR L QG+ +I A Sbjct: 242 AAVATVRTLRRAGWFAARPE--PDLMAFLDIVALATVCDVMPLTDLNRALVTQGL-KILA 298 Query: 258 GKCRPGIKALLEVAN-RDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 + R G+ ALLEVA RD L+A GFALGPR+NA GR+ + +G+ LLLCD+ EAR Sbjct: 299 RRQRTGLDALLEVAGARD--PLSAFTCGFALGPRINAGGRIAESGLGLDLLLCDDAAEAR 356 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 LA LDA+N+ R+ +E + A+ ++ R G L + +WH GVVGI+A R Sbjct: 357 RLAERLDAVNRRRQTVETTILDRAM---DEAASQRAAGRGVLLLSGRDWHPGVVGIVAGR 413 Query: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 IKERF+RPV+ A DGT+KGS RS+ L + A+ + G++ GGHAMAAG S Sbjct: 414 IKERFNRPVLVGAELEDGTVKGSSRSVADLDLGAAI--IAARQAGLLTTGGGHAMAAGFS 471 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 L + F E +V+ +G + A T E+A + P+G Sbjct: 472 LPREGVPALHD-FLEARLAGATALPDATDVLIEGVVHVAGATTELATDIGRLAPFGAGND 530 Query: 497 EPLFD-GHFRLLQQRLVGER--HLKVMVEPVGGGPLLDGIAFNVD----TALWPDNGVRE 549 EP+ R+++ +G L+V+VE GGGP L + F D T + D Sbjct: 531 EPILAIPRVRVVRADRIGREGNTLRVLVEGEGGGPRLKALLFRADDHPATPILEDRNAPP 590 Query: 550 VQLAYKLDINEFRGNRSLQIII 571 + LA L + G S I Sbjct: 591 LHLAGWLRAESWNGRVSAGFFI 612 >UniRef50_C6XKA3 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XKA3_HIRBI Length = 609 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 198/569 (34%), Positives = 288/569 (50%), Gaps = 36/569 (6%) Query: 23 PPLLRRLYASRGV---RSAQELERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVVG 78 P L+ +L A RGV + ++K + P + ++ A E++ A G + V+ Sbjct: 54 PDLIGKLLAGRGVTLDEADTYFSPTLKALFPDPSSFADMDAACEVILEALVSGRKCAVLA 113 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DG TS A+ ++ I Y VP+R +GYG S E + +GA+L++TVD Sbjct: 114 DYDVDGGTSAAILTKYFKAWDRELILY-VPDRLTEGYGPSVEAFESLKEQGAELVMTVDC 172 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 G ++ +E A SLG+ V+V DHHL P A A++NPN DC +A GV F L Sbjct: 173 GAAAVEALEAAHSLGLDVVVLDHHLMQSEPPPAAAVVNPNRPDCKSGCGHMAAAGVVFVL 232 Query: 199 MLALRTFLRDQGWFDERNIA----IPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 L R ++++A +P+ + LDL ALGT+ D+ PL NR G+ + Sbjct: 233 TAGLNRLAR------QKSVAPAGGLPDPMKWLDLCALGTLCDMAPLKGVNRAFVNAGL-K 285 Query: 255 IRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 + G+ AL +V+ +A K + F LGPRLNA GR+ D + LL ++ E Sbjct: 286 VLQRMDNVGLAALSQVSGVEAPK-SVYHATFLLGPRLNAGGRIGDPWIAAKLLATEDRKE 344 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCE-KLERSRDTLPGGLAMYHPEWHQGVVGIL 373 A LA L ALN+ RKEIE + EA + E +L D G + + WH GV+GI+ Sbjct: 345 ALALAERLQALNEARKEIEAEILDEATRIAESRLVEKPDA--GAIVVGGEGWHPGVIGIV 402 Query: 374 ASRIKERFHRP--VIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 A R+KE+FHRP VI + KGSGRS+ G+++ + + + G++L GGHAM Sbjct: 403 AGRLKEKFHRPTIVIGWGEELGPVAKGSGRSVAGVNLGNLIAKASK--EGIILSGGGHAM 460 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS-DGPLSPAEMTMEVAQLLRDAGP 490 AAGLSLE + + F+ E E L Q V+ DG LSPA E+ + AGP Sbjct: 461 AAGLSLEPSQLEAFRDYMEESTAE-AKKELEQARVLELDGLLSPASADGELLLSVDGAGP 519 Query: 491 WGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGV-- 547 +G PEP+F + R R VG HL + GG L IAF A D G Sbjct: 520 YGAGSPEPIFAMANVRSHNVRRVGVDHLSFEILGEDGGK-LRAIAFRAADA---DLGQAI 575 Query: 548 ---REVQLAYKLDINEFRGNRSLQIIIDN 573 + + LA KL +E+RG +Q + + Sbjct: 576 LSGQMMHLAGKLKPDEWRGAGKVQFEVSD 604 >UniRef50_B8DHM3 Single-stranded-DNA-specific exonuclease RecJ n=24 Tax=Listeria RepID=B8DHM3_LISMH Length = 783 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 179/519 (34%), Positives = 269/519 (51%), Gaps = 40/519 (7%) Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 AV + A +I+V GD+DADG TS A+ + +R LG N ++ +PNRF +GYG + Sbjct: 69 AVARIKQAIELNEQILVYGDYDADGVTSIAVLMKTLRHLGA-NAEFYIPNRFTEGYGPNI 127 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 D A +G LI+TVDNGI++ + HA+ +G+ VIVTDHH P + +P A A+I+P Sbjct: 128 AAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREIMPEAVAVIHPKH 187 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 +P LAGVGVA+ L AL L ++ ELLDLVA+GTVAD+V Sbjct: 188 PKSAYPFDELAGVGVAYKLSHAL---LGEEP------------KELLDLVAVGTVADLVS 232 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 L NR+L G+ ++R G+ L + A+ ++ +GF L PRLNA GRL Sbjct: 233 LTDENRLLVQLGLRQLRES-ANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRLGP 291 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 LLL ++ EA LA E+D N+ RK+I ++ L + ++ TL L Sbjct: 292 ADPAADLLLTEDPEEALFLAEEIDDANKERKQI----VVDTTKLAMEAIEAKVTLGNVLV 347 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFA--PAGDGTLKGSGRSIQGLHMRDALERLDT 417 +Y W+ G++GI+AS++ + RP I P G KGSGRS+ H+ AL++ Sbjct: 348 VYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVT-GIAKGSGRSVDAFHLYQALDK--- 403 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGE----LVTEWLDPSLLQGEVVSDGPLS 473 + +M FGGH MAAGL+L + + + E L E P+L E ++ +S Sbjct: 404 -HRDLMTAFGGHPMAAGLTLPAENLIELEAKLQEEASFLSEEDFRPALKIEEKINIADVS 462 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLF---DGHFRLLQQRLVGERHLKVMVEPVGGGPLL 530 A +AQL + A P+G P+P+F + H + ++ + HLK M+ L Sbjct: 463 VA----FIAQLEKLA-PFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATL 517 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQI 569 D I F V + + V + +L INE+ + Q+ Sbjct: 518 DSIGFGVGDLVEKISPNAAVDVVGELSINEWNNVKKPQL 556 >UniRef50_A6Q667 Single-strand DNA-specific exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q667_SULNB Length = 527 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 167/540 (30%), Positives = 273/540 (50%), Gaps = 48/540 (8%) Query: 44 SVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNI 103 S+K + +++A E + A +I ++GD+D DG TST L L + + Sbjct: 24 SLKDLPHPSTFKDMDRATERIVRAIENREKISIIGDYDVDGVTSTTLMKLFFDEIDYP-V 82 Query: 104 DYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHL 163 ++++PNRF DGYGLS ++ + G L +TVDNGIS+ + + GI +I+TDHH+ Sbjct: 83 EWVIPNRFRDGYGLSANIIPRI--AGTDLAITVDNGISAVYAAQLCKEEGIELIITDHHM 140 Query: 164 PGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLA 223 +P A AII+ C+FP + + G +A+YL+ +L+ L + N+ Sbjct: 141 LAPEVPEAYAIIDQKQEACSFPYEEVCGAQIAWYLIASLKNALALK----------INMM 190 Query: 224 ELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDL 283 ++L A+ +ADV+PL NR + +G+ + + RP IKA +E + ++L++ D+ Sbjct: 191 PYMELAAIAIIADVMPLWHINRAMVERGIKAL-SQSSRPAIKAFMEHTQK--EELSSEDI 247 Query: 284 GFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTL 343 F+ P LNAAGR++D S V L NI +ARV L N RK E+ + +AL Sbjct: 248 AFSFAPILNAAGRMEDASHAVDFLTSTNIYDARVRLERLIGFNTERKATEEDITRKAL-- 305 Query: 344 CEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSI 403 + D + + WH+GVVGI+A+R+ +P I + +G LKGSGRS Sbjct: 306 -----QKADWEDEVIIVAGEGWHEGVVGIVAARVARVREKPCIILSRNEEGILKGSGRSY 360 Query: 404 QGLHMRDALE--RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRF------GELVTE 455 + ++ R D + KFGGH A GLSL E F+ F+++ G V E Sbjct: 361 GECDLFGIVDGCRED------LEKFGGHKAAIGLSLHETHFESFREKVQESYHQGNYVKE 414 Query: 456 WLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGE 514 +DP ++ G L +E++ + ++++ P+G P P F +LQ +G+ Sbjct: 415 EIDPEIV-------GELHFSEISFALTEMMQKYEPYGHGNPRPKFISSDVEILQADTMGK 467 Query: 515 RHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + G ++ G+ F + G R V + Y ++ N FRGN +LQ++ID I Sbjct: 468 EGEHLRFSFAQEGIVMPGVKFKTKEHF--ETGER-VSITYTVNENHFRGNVTLQLMIDKI 524 >UniRef50_C5RCA3 Recombination protein J n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RCA3_WEIPA Length = 768 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 187/556 (33%), Positives = 285/556 (51%), Gaps = 40/556 (7%) Query: 25 LLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 L+ ++ +RG + + L + G+ L ++KA+ L A G +IIV GD+ Sbjct: 31 LIAKILVNRGYDTIEAANAFLRPDLSGLYDPFLLHDMDKAITRLMQAIDNGQKIIVYGDY 90 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 D DG TSTA+ A+ +G N+DY VP+RF DGYG + + A G QL+VTVDNG+ Sbjct: 91 DVDGMTSTAIMTWALELMGA-NVDYFVPSRFSDGYGPNLANYQRFAAEGMQLLVTVDNGV 149 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 S V S GI VI+TDHH + LP A AI++P + +P L+G GVAF + Sbjct: 150 SGKDEVAWLMSQGIDVIITDHHELPEELPIATAIVHPRHPEGEYPFGGLSGAGVAFKVAS 209 Query: 201 ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKC 260 AL D E+LDL ALGTVADV+ L NRI+ QG+ ++ Sbjct: 210 ALLEEPAD---------------EVLDLAALGTVADVMSLTDENRIIVKQGLENLKL-DP 253 Query: 261 RPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLAN 320 RPG+ ALL A + +S +GF + PRLNA GRL+D + GV LLL D+IG+A+ LA+ Sbjct: 254 RPGLAALLAAAGTQLSDIDSSTIGFTIAPRLNALGRLEDATTGVQLLLMDDIGDAKPLAD 313 Query: 321 ELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKER 380 +++LNQ R+++ + A +L + G WH+GV+GI+AS++ E+ Sbjct: 314 HINSLNQERQQLVTTITAAAQEQAAQLRDDPVLVVAG-----ENWHEGVLGIVASKLVEQ 368 Query: 381 FHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEED 440 +P I GD +KGSGRS+ + AL+ + +M FGGHA AAG+++ + Sbjct: 369 TGKPTIVLNINGD-EMKGSGRSVPFFDLFTALDG----HRDLMTAFGGHASAAGMTVPTN 423 Query: 441 KFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF 500 + + + + + + +S A+ T E L+ P+G+ PEPLF Sbjct: 424 NLTALRAALHDAAAQQELANAQKPNLQIAAKVSAADFTKENFDNLQVLAPFGEGNPEPLF 483 Query: 501 DGHFRLLQQ--RLVGERHLKVMVEPVGGGPLLDGIAF---NVDTALWPDNGVREVQLAYK 555 + Q + +HL+ + + L IAF N +AL +Q+ Sbjct: 484 MLDLLGVNQVKTMSDGKHLRFIAQT--DTDQLPVIAFGWGNQASALA--GHFSSLQIIGT 539 Query: 556 LDINEFRGNRSLQIII 571 + N +RGN S Q+++ Sbjct: 540 MSQNSYRGNISYQLML 555 >UniRef50_C0X5S7 Single-stranded-DNA-specific exonuclease RecJ n=38 Tax=Enterococcus RepID=C0X5S7_ENTFA Length = 770 Score = 248 bits (633), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 186/562 (33%), Positives = 284/562 (50%), Gaps = 39/562 (6%) Query: 21 ELPPLLRRLYASRGVRSAQELER----SVKGMLPWQQLSGVEKAVEILYNAFREGTRIIV 76 E+ PL+ +L R +R+ + L + +++ + + +EKAV + A G +I+V Sbjct: 28 EINPLIGQLLWHRNIRTEEALRKFLHPTIEDIYDPFLMHDMEKAVARIQQAVEAGEQILV 87 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+DADG TST + A+ +G + Y +PNRF GYG + +V + +G QLIVTV Sbjct: 88 YGDYDADGITSTTVMKEAIELVGGM-VQYFLPNRFVHGYGPNKDVFAEQIEQGVQLIVTV 146 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 DNG++ H + +A + G+ VIVTDHH + LP A AI++P ++P LAGVGVAF Sbjct: 147 DNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAYAIVHPRHPQGDYPFGDLAGVGVAF 206 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 + AL L ELLDLVA+GT+AD+V L NR G+ I+ Sbjct: 207 KVATALLGELP---------------IELLDLVAIGTIADLVSLTDENRTFVKMGLQMIQ 251 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 G R G+ LL+ A + ++ +GF +GPRLNA GRL + + GV L+ + +A Sbjct: 252 TGD-RIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNALGRLGEAAPGVELMTTFDEEQAL 310 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 +A +D N RK+I + EAL L + G WH+GV+GI+A R Sbjct: 311 EIAKYIDQQNNERKDIVTTIAKEALDLIDPNAPVHILAKQG-------WHEGVLGIVAGR 363 Query: 377 IKERFHRPVIAFAPAGDGTL-KGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 I + +P I A GT KGSGRSI L++ +AL + + FGGH MAAG+ Sbjct: 364 IMQETGKPTIILAIDESGTTAKGSGRSISALNLYEALNEVREQFT----HFGGHHMAAGM 419 Query: 436 SLEEDKFKLFQQRFGELVTE-WLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 +L + Q+ + + +D + Q ++S+ L+ ++ T LR P+G Sbjct: 420 TLPVENIPFVQEHLAHFIEKNQIDMANGQELLISES-LAVSQATTTFIDQLRILAPFGTD 478 Query: 495 FPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD-TALWPDNGVREVQL 552 P F Q R +G + + + G LD IAF + A G +V Sbjct: 479 NTVPTFVFKEITPTQIRQIGADNAHLKFQMNQEGAQLDAIAFQMGPQADELAQGTADV-- 536 Query: 553 AYKLDINEFRGNRSLQIIIDNI 574 A +L INE+ G + Q+++ + Sbjct: 537 AGQLSINEWNGRKKPQLMVTDF 558 >UniRef50_B8HKK4 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Chroococcales RepID=B8HKK4_CYAP4 Length = 813 Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 178/517 (34%), Positives = 282/517 (54%), Gaps = 37/517 (7%) Query: 22 LPPLLRRLYASRGVRSAQELER-----SVKGMLPWQQLSGVEKAVEILYNAFREGTRIIV 76 L PLL ++ +RG+ + +++++ S+ P + + + +VE+L A I + Sbjct: 43 LDPLLAQVLINRGLETPEQVQQFLEPESLILPSPLTEFADLGLSVELLLQAIAAQKEIAI 102 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+DADG TSTAL + A+++LG + ++Y +P+R ++GYGL+ +V++ G QLI+TV Sbjct: 103 CGDYDADGMTSTALLLRALQALG-ARVNYAIPSRMQEGYGLNERIVEEFAGSGVQLILTV 161 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 DNGI++H + AR LG+ VIVTDHH LP A AI+NP L + P LAGVGVA+ Sbjct: 162 DNGIAAHRPITRARELGLAVIVTDHHDLPPELPCANAILNPKLLPHSSPYAGLAGVGVAY 221 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L ++L L G ++ A LL+L LGT+AD+ PL NR +G++ + Sbjct: 222 ILAVSLAQSL---GRTEDLVTA------LLELFTLGTIADLAPLTGVNRRWVKRGLALLP 272 Query: 257 AGKCRPGIKALLEV-----ANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 + GI+AL++V + ++ Q +GF LGPR+NA GR+ D + LL D+ Sbjct: 273 RSRFA-GIQALIQVSGGLTSKQENQAFKPEAIGFRLGPRINAIGRIGDPQTVIDLLTTDD 331 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEK----LERSRDTLPGGLAMYHPEWHQ 367 A A + NQ R+++ + ++ EA+ E LER R L + HP+WH Sbjct: 332 PMLAYAQAMVCEQTNQKRQQLCEEIEREAIAQLEAAQLDLERER-----VLVLVHPDWHH 386 Query: 368 GVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 GV+GI+ASR+ ER+ PV + G ++GS R I + AL+ L +LKFG Sbjct: 387 GVIGIVASRLVERYGVPVFIGSYEEQGQIRGSARGIPEFDVFGALQYCQDL----LLKFG 442 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRD 487 GH A G SLE D+ + R + L P L+ V D + +++T E+ + Sbjct: 443 GHRAAGGFSLEADQLPALRSRLRDFAHLQLQPEQLKPLVTVDVEVHLSQITWELYHQIDR 502 Query: 488 AGPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMV 521 P G PEP+F +++Q+ +G + HLK+++ Sbjct: 503 LHPCGIGNPEPVFWSAGVEVVEQKRIGKDQAHLKLVL 539 >UniRef50_C6VR18 Single-strand DNA-specific exonuclease RecJ n=6 Tax=Lactobacillus RepID=C6VR18_LACPJ Length = 778 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 186/573 (32%), Positives = 296/573 (51%), Gaps = 37/573 (6%) Query: 11 EVDETADLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYN 66 +VD+ A+ A + PL+ RL RG+ +A+E L + +L + +EKAV+ + Sbjct: 20 DVDKLAE-AASVTPLVARLLIMRGINTAEEAAPFLHADQQPLLDPTNMHDMEKAVDRIQE 78 Query: 67 AFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH 126 A G +I + GD+DADG TST++ + +G +N++Y +P+RF+DGYG + D+ Sbjct: 79 AIIAGDQITIYGDYDADGLTSTSIMYETLDQIG-ANVNYYIPDRFKDGYGPNQAAFDRLI 137 Query: 127 ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPS 186 A G +L VTVDNG++ +A + + GI V+VTDHH LP A AI++P + ++P Sbjct: 138 AAGTKLFVTVDNGVAGNAVINQVQEQGIDVVVTDHHELPTELPHAYAIVHPRHPEGSYPF 197 Query: 187 KSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRI 246 L+G GVAF + AL + ELLDL A+GTVAD+V L NR Sbjct: 198 GGLSGAGVAFKVATALLEEVP---------------EELLDLAAIGTVADLVSLTGENRT 242 Query: 247 LTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVAL 306 L G+ ++ RPG+ AL++ A KL +++GF + PRLNA GRL GV L Sbjct: 243 LVTLGL-KVLQQTTRPGLAALIQEAGLIPDKLTETNIGFGIAPRLNALGRLQSAQSGVEL 301 Query: 307 LLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLE-RSRDTLPGGLAMYHPEW 365 L + A LA +++ LN+ R+ + + + A+ + E +R T L + W Sbjct: 302 LTTLDDERATALAKQVNQLNEKRQGLVKTISASAIEQAQTPENEARQT----LVITGHGW 357 Query: 366 HQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLK 425 H+GV+GI+AS + E +P + DG LKGSGRS++ ++ A++ + ++ Sbjct: 358 HEGVLGIVASHVVETTGKPTLVLNEDDDGRLKGSGRSVEAYNLFAAIDPVRE----SLVA 413 Query: 426 FGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLL 485 FGGH MA GL++ D+ ++ Q + DG L AE T+ + Sbjct: 414 FGGHHMAVGLTVMADQLATLKEAMEVAAVSQQLADNAQVSLPIDGTLPLAEATLATLADI 473 Query: 486 RDAGPWGQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALW 542 + P+G P PLF+ + R +G ++HLK+ + G +D I F++ TAL Sbjct: 474 QALAPFGTDNPAPLFELVPTTVPHARAIGSDQQHLKLQLG--DGTNTIDAIGFSMGTALP 531 Query: 543 PDNGV-REVQLAYKLDINEFRGNRSLQIIIDNI 574 +V L +L N + G QI++ +I Sbjct: 532 AIQASPTDVTLVGELSENTWNGQTKPQIMVKDI 564 >UniRef50_A5VFK4 Single-stranded-DNA-specific exonuclease RecJ n=10 Tax=Sphingomonadales RepID=A5VFK4_SPHWW Length = 588 Score = 248 bits (632), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 193/514 (37%), Positives = 281/514 (54%), Gaps = 29/514 (5%) Query: 21 ELPPLLRRLYASRGV-RSAQELER--SVKGMLPWQQL-SGVEKAVEILYNAFREGTRIIV 76 E L+ +L +RG R A EL R +++G +P + +++A L +A G + + Sbjct: 32 EADDLITQLLLARGCPREAVELHRLPTIRGFMPDPSIFRDMDEAAARLADAVEHGEPVTI 91 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+D DGATS AL + +R LG + +P+R +GYG S E + + G +LIVTV Sbjct: 92 FGDYDVDGATSAALLIRLLRDLGL-RAGFYIPDRLMEGYGPSGEALLKIGEGGTRLIVTV 150 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKS--LAGVGV 194 D G + ++ A GI VIV DHH LP A A++NPN D + LA VGV Sbjct: 151 DCGAQAFEALKLASDAGIDVIVVDHHKCAAELPRAFALVNPNRLDEGEGAAHGHLAAVGV 210 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 AF L AL LR + +F R A P L +LLD+VALGTVADV L NR QG+ + Sbjct: 211 AFLLGAALLRVLRARNFFATR--AEPKLIDLLDIVALGTVADVASLRGLNRAFVAQGI-K 267 Query: 255 IRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 + AG+ G+ AL+E A+R + +DLGFALGPR+NA GR+ +GV LL ++ E Sbjct: 268 VMAGRRNIGLAALIE-ASRLERAPTCTDLGFALGPRINAGGRVGKSDLGVRLLTTEDRDE 326 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLC-EKLERSRDTLPGGLAMYHPEWHQGVVGIL 373 AR +A ELD LN+ R+ IE+ +Q EA TL + RS + G WH GV+GI+ Sbjct: 327 ARTIAAELDRLNEERRAIEKAVQEEAETLSGSQGNRSVAVVAAG------GWHPGVIGIV 380 Query: 374 ASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAA 433 A R+KE+ RP + A DG KGSGRSI G+ + A+ L G+++ GGHAMAA Sbjct: 381 AGRLKEKLGRPALVIALDKDGVGKGSGRSIGGVDLGAAI--LAAKDMGLLVAGGGHAMAA 438 Query: 434 GLSLEEDKF----KLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAG 489 G+++ ++R V D L + D ++P +T + + L G Sbjct: 439 GVTVAPGGVDALADFLEERLASDVARARDDRAL----LLDAVVAPGGVTPSLVEALEAGG 494 Query: 490 PWGQMFPEP-LFDGHFRLLQQRLVGERHLKVMVE 522 P+G +P P + G R+++ +VG+ H++ +V Sbjct: 495 PYGAGWPAPRIAAGAVRVIKADVVGQGHVRTIVS 528 >UniRef50_Q03W56 Single-stranded DNA-specific exonuclease n=3 Tax=Leuconostoc RepID=Q03W56_LEUMM Length = 655 Score = 248 bits (632), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 188/566 (33%), Positives = 294/566 (51%), Gaps = 48/566 (8%) Query: 25 LLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 + + A RG + L+ SV+ + L +++ +E L +A G +I+V GD+ Sbjct: 29 FMSTIVAQRGYTDPEAAFKYLQPSVEQLHDPMLLHDMDRTIERLQDAAFGGEKIVVYGDY 88 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 D DG TSTA+ V A+ LG Y +PNRF DGYG + + + A GAQLIVTVDNG+ Sbjct: 89 DMDGVTSTAIMVEALEVLGADVTPY-IPNRFSDGYGPNIDTYKKLIADGAQLIVTVDNGV 147 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 S VE+A S GI VI+TDHH TLP A A+I+P +P L+G GVAF + Sbjct: 148 SGQEAVEYAMSQGIDVIITDHHEMPATLPNAYAVIHPRHPKGQYPFGDLSGAGVAFKVAQ 207 Query: 201 ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKC 260 A L ++G E +P ELLDLVALG ++D+V L NR+L G+ +I Sbjct: 208 A----LLNEGQPVEDQTELP--TELLDLVALGEISDMVSLTDENRVLVSWGLKQINVSP- 260 Query: 261 RPGIKALLEVA-NRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 RPG+ A+L+ A +D + + + + F + PRLNA GRL D S+ + LLL + E+ +A Sbjct: 261 RPGLTAVLKNAGKKDNEPVISETVSFKIAPRLNAVGRLGDASLSLQLLLSQDPEESTAIA 320 Query: 320 NELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKE 379 +E++A+N R+EI + + A + E D + L + +WHQG++GI+ASR+ E Sbjct: 321 SEVEAINAQRQEIVEEVFGSAKQMALSDEYKNDQV---LVIAGQDWHQGILGIVASRLVE 377 Query: 380 RFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEE 439 +P I + DG KGSGR+ + + LY FGGHA A GL++ Sbjct: 378 LLQKPTIVLS-LTDGVYKGSGRTFGDFDLYQFMNTFHDLYD----TFGGHASALGLAISP 432 Query: 440 DKFKLFQQRFGELVTEWLDPSLLQ---GEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 ++ + +++ L+ + LQ + + LS E++ E + LR P+G Sbjct: 433 EQLDVLKEQV------RLNSAKLQIHAKPISINTTLSVNEISTETYEELRLLEPFGTGNQ 486 Query: 497 EPLFDGHFRLLQQRLVG--------ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVR 548 +P+F LQQ + ++H+K+ +E ++ + FN + Sbjct: 487 QPVFG-----LQQPKINKVTTMGNLKQHIKLALENN-----VEAVGFNHPDWVPMVANPL 536 Query: 549 EVQLAYKLDINEFRGNRSLQIIIDNI 574 + A L IN FRG +++Q+++ I Sbjct: 537 GISFAATLGINYFRGRKTIQLLLTAI 562 >UniRef50_Q1PZA9 Similar to exonuclease RecJ n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZA9_9BACT Length = 577 Score = 247 bits (631), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 162/442 (36%), Positives = 238/442 (53%), Gaps = 25/442 (5%) Query: 25 LLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 LL ++ +RG+ L+ + + L +EKA + A R G +I++ GD+ Sbjct: 27 LLAQILINRGITDVGAAKGFLQPQISTLSDPSNLPDIEKASVRINEAIRNGEKIVIYGDY 86 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 D DG T+TAL ++ + ++Y +P R E+GYGL+ E + + A G LI+TVD GI Sbjct: 87 DVDGLTATALMYRCLKMFD-ARVNYYIPERLEEGYGLNAEAIAKLKAGGTDLILTVDCGI 145 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 S+ E ARS GI +I+TDHH P +P A AIINP L+ + +GVG+AF L Sbjct: 146 SACREAEIARSYGIELIITDHHQPSQEIPDAFAIINPKLKATEKTFRDFSGVGIAFMLAW 205 Query: 201 ALRTFLRDQGWFDERNIA---IPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 ++ Q +F ++ ++ L + LVALGT+ADVVPL NRILT G+ ++ Sbjct: 206 SV-----GQHYFPQKKVSNEFKDFLISAMGLVALGTIADVVPLVGENRILTKYGLGALQQ 260 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 K PG++ALLEV++ L S +G+ LGPR+NA GR+ D V V +L +A+ Sbjct: 261 TKI-PGLQALLEVSSLTNINLDTSHVGYRLGPRINAPGRVSDAGVVVEMLTTACNEKAKE 319 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY--HPEWHQGVVGILAS 375 +A L+ N R+ MQ++ L+ + L LA+ EWH G+VGI+AS Sbjct: 320 IALFLEEENNRRR----AMQLDILSAARQKIVDEINLDETLAIVLADQEWHPGIVGIIAS 375 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 +I E F+RP + A A D GS RSI HM DALE M++ GGHA AAGL Sbjct: 376 KIAEEFNRPAVMIAVA-DEIGHGSARSIPSFHMLDALE----CCKNMLISVGGHAQAAGL 430 Query: 436 SLEEDKFKLFQQRFGELVTEWL 457 + D F+ ++ + L Sbjct: 431 KIHPDNIGDFRTLLNRMMAQKL 452 >UniRef50_D2R2J0 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Planctomycetaceae RepID=D2R2J0_9PLAN Length = 590 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 193/565 (34%), Positives = 293/565 (51%), Gaps = 34/565 (6%) Query: 22 LPPLLRRLYASRGVR---SAQE-LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 L P++ +L +RG+ +A+E L+ G+ + L G +A E L+ A +I+V Sbjct: 23 LSPIIVQLLVARGIYQPDAAKEFLDAKFGGLRDPELLPGATEAAERLFAAIEAQRKIVVY 82 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+DADG T T++ +L L ++ Y VPNR E+GYGLS ++ A+GAQL+++VD Sbjct: 83 GDYDADGMTGTSI-LLGCLKLLRADASYYVPNRLEEGYGLSNTALESLAAKGAQLVISVD 141 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 GI+S + A+ LG+ +IVTDHH LP A ++P L +P L G GVA Sbjct: 142 CGIASLSEARRAKELGLELIVTDHHEFASELPEAAVCVHPRLPGTAYPFGGLCGAGVALK 201 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLD---LVALGTVADVVPLDANNRILTWQGMSR 254 + AL Q + + LL L A+GTVADVVPL NRIL G++ Sbjct: 202 VAWAL-----CQKASQSKKVTDAMRTYLLSAMGLAAIGTVADVVPLVDENRILVRHGLTY 256 Query: 255 IRAGKCRP--GIKALLEVAN-RDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 + K +P G+ ALLE+ Q L++ D+ F + PRLNAAGR + V LL DN Sbjct: 257 L---KSQPMIGLGALLELTGLTKKQSLSSEDIAFTIAPRLNAAGRFGQAQLAVELLTTDN 313 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVG 371 A LA + LN +R+ +E+ +Q+ A+ K + + D P L + WH GV+G Sbjct: 314 ASRAASLAEYIHQLNSSRESLERSIQLAAVKQA-KEQFNPDDDP-ALVLAGRGWHAGVIG 371 Query: 372 ILASRIKERFHRPV--IAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGH 429 ++A R+ E+F+RPV IA G GS RS+ G ++ +AL T ++ +GGH Sbjct: 372 LVAGRLAEKFNRPVVLIALDQLGLKPGTGSARSVAGFNLHEAL----TASGEHLVGYGGH 427 Query: 430 AMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAG 489 A AAGL +EE K + F++ F E + PS GE+ D E+ + + + Sbjct: 428 AAAAGLRIEESKVEAFREAFCEFAASQIRPSERTGELRIDAESQLCEVNVSTIRQIEQME 487 Query: 490 PWGQMFPEPLFDGHFRLL---QQRL-VGERHLKVMVEPVGGGPLLDGIAFNV-DTALWPD 544 P+G P PL L +R+ GERH+ + ++ G + G+ F + D Sbjct: 488 PFGCGNPRPLLCASGVTLVEPPKRIGGGERHIAIKLQQ--AGVTMRGVGFGMGDQCDELA 545 Query: 545 NGVREVQLAYKLDINEFRGNRSLQI 569 V + +AY+ INEFRG + ++ Sbjct: 546 QAVGPLDIAYRPVINEFRGRVTAEL 570 >UniRef50_C0GFY2 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFY2_9FIRM Length = 788 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 195/561 (34%), Positives = 294/561 (52%), Gaps = 52/561 (9%) Query: 26 LRRLYAS----RGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIV 76 L RL A+ RGV + + + G L P++ ++G+ KA E L A RE +++ Sbjct: 26 LHRLTAACLTQRGVTTTEAARLFLAGSLSDLGDPFK-MAGMAKAAERLALAVREREPVLI 84 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+DADG TSTAL + ++ L S ++Y +P+R DGYGL V+++ RG +L VTV Sbjct: 85 YGDYDADGVTSTALLMAVLQKLEVS-VEYYIPSRLGDGYGLHGSVLEEFAGRGGKLAVTV 143 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D GI+S A +E A+ LG+ +IVTDHH D A A++NP +C + ++LAGVGVA+ Sbjct: 144 DCGINSFAEMELAKELGLDLIVTDHHECFDGQRNAFAVLNPKQEECGYSERNLAGVGVAW 203 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L AL + L + AE LDLVA+G++ADVVPL NRIL G+ ++ Sbjct: 204 NLARALHSLL---------GVPFAETAEYLDLVAVGSIADVVPLLGENRILVKYGLEKL- 253 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 + + RPG+ AL V N QKL+A+ + F L PRLNA GRL D + V LL + +A Sbjct: 254 SERPRPGLAALARVGNVGEQKLSATQVAFVLAPRLNAPGRLGDAAPAVETLL-ADEADAE 312 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 LA+ELD N+ R+++E+ + EA L L ++ WH GVVGI+A R Sbjct: 313 ALAHELDEKNRQRQQVEKDILAEARELAAAQADK-----PALVLWRDTWHPGVVGIVAGR 367 Query: 377 IKERFHRPVIAFAPAGDGTL-KGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 + F +P A DGT GS RS+ G + DAL+ + +FGGH AAGL Sbjct: 368 LASEFAKPSALVAV--DGTQGNGSIRSVPGCDVVDALQACTE----HLARFGGHPEAAGL 421 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 +++ + F++ F V + +V ++ L+ + + + P+GQ Sbjct: 422 TVDTQCLEAFREAFCRAVATQKTKEEQRQQVAAEAVLAELSLELVEELAALE--PFGQGN 479 Query: 496 PEPLF-DGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAF-----------NVDTAL 541 PEPLF + R VG +HL++ ++ GGP+ GI F VD + Sbjct: 480 PEPLFLVRDVEVAAARRVGNNGKHLQMKLK--NGGPVYAGICFGGGEADIARGMQVDAVV 537 Query: 542 WPDNGVREVQLAYKLDINEFR 562 +P + + + L + + R Sbjct: 538 FPTTNTWQGRTSLSLHVRDVR 558 >UniRef50_Q8DJI0 Tll1243 protein n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DJI0_THEEB Length = 775 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 180/524 (34%), Positives = 279/524 (53%), Gaps = 29/524 (5%) Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 AVE+L A G ++ + GD+DADG TSTAL + A+R LG ++IDY +P+R +GYG++ Sbjct: 90 AVELLQRAIARGDKMTICGDYDADGMTSTALLLRALRHLG-ADIDYEIPSRMHEGYGINE 148 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 +V + + RG +LI+TVDNGI++ + AR LG+ VIVTDHH LP A AI+NP L Sbjct: 149 RIVQECYDRGVKLILTVDNGIAALHPILKARELGLTVIVTDHHDVPPQLPPAHAILNPKL 208 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 P +LAGVG+A+ L ++L L + W P + L +L LGT+AD+ P Sbjct: 209 VPPTSPYHTLAGVGMAYILAVSLAQRLGN--WR-------PLVRPLRELCTLGTIADLAP 259 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVA----NRDAQKLAASDLGFALGPRLNAAG 295 L NR QG+ + G++AL++VA +DA L + +GF LGPR+NA G Sbjct: 260 LTGVNRRWVKQGLQTLPTSSLV-GVQALMQVAGCLPEQDA-SLKPTAVGFRLGPRINAIG 317 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ D V + LL D+ A+ LA +A N+ R+++ ++ EA+ E+ + Sbjct: 318 RIGDPQVVIELLTTDDPDRAQELAALCEATNRRRQDLCAAIEAEAIAHLEETDFDPQQ-E 376 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 L + P WH GV+GI+ASR+ ER+ PV + ++GS RSI H+ +ALE Sbjct: 377 WVLVIVQPNWHHGVIGIVASRLVERYGVPVFIGTYENETIIRGSIRSIPEFHVFEALEAT 436 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L +LK+GGH A G SL + ++ R L P L+ V D +S Sbjct: 437 KDL----LLKYGGHKAAGGFSLRAEHLAAWRDRLRAFAQTCLKPEDLRPLVTLDAEISFE 492 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGER--HLKVMVEPVGGGPLLDG 532 ++T + + P+G P+P+F ++L+Q +G++ HLK+ +E G + Sbjct: 493 QLTWDFYTQVEQLQPFGSENPQPMFCSRGVKILEQTPMGQQGEHLKLTLE--QNGQQMTA 550 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 A+ L V +AY L + + G L++ + + P Sbjct: 551 KAWRWGPFL---PLPTRVDIAYHLTAHTWHGETQLELELKGVKP 591 >UniRef50_A3UCE8 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UCE8_9RHOB Length = 592 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 185/518 (35%), Positives = 270/518 (52%), Gaps = 20/518 (3%) Query: 26 LRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 L RL A+RG+ + L ++ P L G+++A +++A G RI + D+D Sbjct: 40 LGRLMAARGLTAEDAPAFLAPKLRDSFPDPSTLKGMDEAARRIWDALDAGDRIALFADYD 99 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 DGATS A +R+LG I Y VP+R E+GYG + + +GA+L++T+D G + Sbjct: 100 VDGATSAAQLGGWLRTLGADPIIY-VPDRIEEGYGPNAPALKSLKEQGARLVITLDCGAA 158 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLA 201 S + A +G+PV+V DHHL +P A+A++NPN LA GV F L+ A Sbjct: 159 SVGPLTAAHEMGLPVVVIDHHLMDGEIPPADALVNPNQPGDVSGCGHLAAAGVTFVLLAA 218 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 261 L R +G F + A PN+ + DL ALGT+ DVV L NR + QG+ ++ + R Sbjct: 219 LNREGRRRGAF--KGQAEPNVLDFADLAALGTICDVVSLTGVNRAIVAQGL-KVMSAWSR 275 Query: 262 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 321 PG+ AL A + GF LGPR+NA GR+ +G L++ + EA +A Sbjct: 276 PGMAALAAAAGVQGPA-SPYHAGFLLGPRINAGGRVGQSDLGARLMMTQDPKEAAHIAQT 334 Query: 322 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 381 LDALN R+ IE + +A E L+ DT L WH GV+GI+A RIKERF Sbjct: 335 LDALNAERRAIETEVLDQAQAQVEALKLEDDTPI--LIASGEHWHPGVIGIVAGRIKERF 392 Query: 382 HRP--VIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEE 439 +RP VI P G KGSGRS G+++ A+ G+++ GGHAMA GL+++ Sbjct: 393 NRPAIVIGVDPE-TGLGKGSGRSCTGVNLGAAVAA--AREEGLLVAGGGHAMACGLTVDV 449 Query: 440 DKF-KLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEP 498 ++ +L L EW+ + V D +SP+ ++ E + L A P+G PEP Sbjct: 450 NRIGELTDYLTARLKQEWIAAEEARTYSV-DAVISPSAVSFEFCEALSAAEPYGMGNPEP 508 Query: 499 LFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 F R + VG H++ E GGG L GI+F Sbjct: 509 RFAFSSLRRTYAQRVGTDHVRFTFESPGGG-RLTGISF 545 >UniRef50_A8UBS7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Carnobacterium sp. AT7 RepID=A8UBS7_9LACT Length = 699 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 176/497 (35%), Positives = 256/497 (51%), Gaps = 35/497 (7%) Query: 84 GATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSH 143 G TSTA+ + +G ++Y +PNRF DGYG + ++ +G QLI+T DNG+S H Sbjct: 17 GVTSTAVLKETIEMIG-GEVNYYIPNRFTDGYGPNTAAFERLIEQGTQLILTCDNGVSGH 75 Query: 144 AGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALR 203 ++ A+SLGI VI+TDHH DTLP A A+I+P ++P LAGVGVAF L AL Sbjct: 76 TAIDRAKSLGIDVIITDHHELPDTLPDAYAVIHPRHPKGSYPFGELAGVGVAFKLATALL 135 Query: 204 TFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPG 263 IP ELLDLVALGT+AD+V L NR L QG+ ++ + R G Sbjct: 136 G-------------EIP--IELLDLVALGTIADLVLLTNENRALVKQGLLVLKNTQ-RMG 179 Query: 264 IKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELD 323 + AL + A +++ +GF + PRLNA GRL D + V LL + A LA + Sbjct: 180 LTALFKSAKIKREEIDEETIGFIIAPRLNAVGRLGDAAPAVELLTTFDDETALALAQLVQ 239 Query: 324 ALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHR 383 N R+ + EA + EKL + D + WH+GV+GI+AS+I + + Sbjct: 240 EKNTERQAYVSTITNEAFEMIEKLPTASDV----YVLAKEGWHEGVLGIVASKIVGKTGK 295 Query: 384 PVIAFA-PAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKF 442 P + G KGSGRSI H+ +AL+ + L FGGH MAAGL++ + Sbjct: 296 PTLVMTIDNAKGLAKGSGRSIAAFHLYNALDSVRQL----TTTFGGHHMAAGLTVPIENI 351 Query: 443 KLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG 502 L Q E L E+ DG L E T+EV + L P+G +PLF Sbjct: 352 ALIQDNLNHYAAETGLSEELGEEIQVDGQLKIQEATVEVVEELNRLAPFGTDNLKPLF-- 409 Query: 503 HFRLLQ----QRLVGER-HLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLD 557 F+ ++ +R+ G++ HLK+ + V LD I F + +V + KL Sbjct: 410 LFKNVESQDVRRIGGDQAHLKMKL--VEDNAFLDVIGFQFGSVADEIGLYSDVSVVGKLA 467 Query: 558 INEFRGNRSLQIIIDNI 574 INE+ G+R Q++++++ Sbjct: 468 INEWNGSRKTQLMLEDL 484 >UniRef50_C1F3K9 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3K9_ACIC5 Length = 592 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 192/574 (33%), Positives = 290/574 (50%), Gaps = 44/574 (7%) Query: 23 PPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVG 78 P L+ L A+RG SA+ L S+ +L + G+ +AV + A +++ G Sbjct: 39 PLLIAELLAARGASSAEAARAFLAPSLDDLLDPYSMRGMAEAVARIEQAAARHETMLIYG 98 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DG T+T L A+ LG + + VP+R +GYG+ E+++ A A G +L+++VD Sbjct: 99 DYDVDGTTATVLLKTAIERLG-GTVRFHVPHRLREGYGMQREILESAAADGVRLVISVDT 157 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLP--GDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 GI + A E A LG+ +IVTDHHLP G +P A A++NPN C + K L G GVAF Sbjct: 158 GIRAFAAAEAAAELGLDLIVTDHHLPEDGTGIPRALAVLNPNQPGCEYACKYLCGAGVAF 217 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L AL L Q R +P+ L ++A+ TVAD VPL NR + G++ +R Sbjct: 218 KLSQAL---LEKQDRTLARTKILPS---FLKMLAIATVADAVPLLGENRTIVSIGLAELR 271 Query: 257 AGKCRP---GIKALLEVANRDAQK--LAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 RP G++ALL A D + + A+D+ F L PR+NAAGR+D S V L + Sbjct: 272 ----RPVNAGLRALLTEAKLDPARKAITATDVAFRLAPRINAAGRMDIASEVVELFTTRD 327 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVG 371 AR LA +L+ LNQ R+ E + L E+L + M WH+GV+G Sbjct: 328 PQRARDLAAKLEQLNQDRRATEAAILERIL---ERLAEPHFAEARCIVMDGEGWHRGVLG 384 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 ILASRI ++ +P + + DG GSGRSI G H+ +ALE L+ KFGGHA Sbjct: 385 ILASRILDQTGKPALVISHE-DGEAHGSGRSITGYHLLEALESCHDLFT----KFGGHAH 439 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 A G S+ ++ + R E E + L G +V L+ +T LR P+ Sbjct: 440 AVGFSMPSERVPELRARLVEHAAERITEQDLGGPLVCHAELALDHITAAAFSWLRRLEPF 499 Query: 492 GQMFPEPLFDGHFRLLQQ--RLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDN---- 545 G EP+F L R + E+H+++ + G + + ++ W + Sbjct: 500 GMGNEEPVFVARKVRLAGPVRTMKEKHVRLSLSHGPRGVRISALGWH-----WAERVAAL 554 Query: 546 GVRE---VQLAYKLDINEFRGNRSLQIIIDNIWP 576 G++E + +AY+L NE L++ I ++ P Sbjct: 555 GIQEDDLLNIAYRLRENEHPEYGGLELEIVDLQP 588 >UniRef50_B5EMW0 Phosphoesterase RecJ domain protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMW0_ACIF5 Length = 605 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 189/554 (34%), Positives = 291/554 (52%), Gaps = 38/554 (6%) Query: 41 LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRS--- 97 L + G+ P L ++ A E + +A ++G I+++ DFDADGA++ A+ A R Sbjct: 50 LNLQLSGLTPPDLLPDIDIASECIVSAIKQGLPILLISDFDADGASAHAVLKFAFRDYFG 109 Query: 98 LGCSNIDYLVPNRFEDGYGLSPEVVDQ--AHARGAQLIVTVDNGISSHAGVEHARSLGIP 155 + + I + +R DGYG++ + D+ A A LI+T D G + H + R G Sbjct: 110 VPEARIHSYIGHRLRDGYGVTETLTDRIIAEAPRPALIITADQGSTDHERIARLRDHGFT 169 Query: 156 VIVTDHH-LPGDTLP-AAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFD 213 VIVTDHH +P D P AA A +NP D FP +AGV VA+ L A+R L G Sbjct: 170 VIVTDHHGVPADGPPTAAMACVNPVREDSAFPDPYIAGVHVAWLLCCAVRRRLIQDG--- 226 Query: 214 ERNIAIPNLAELLDLVALGTVADVVPL--DANNRILTWQGMSRIRAGKCRPGIKALLEVA 271 + + P L LLDLVALGT+AD V L NN+ + +G++ + + RP +AL VA Sbjct: 227 DLPASAPKLGGLLDLVALGTMADCVDLARSTNNKAIIARGLAIMNSPVARPAWQALY-VA 285 Query: 272 NRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKE 331 + A+ L F+ P +NA GRLD V LL+ D++ A LA N RK Sbjct: 286 TNCKGPITAATLAFSFAPVINARGRLDSALGSVDLLMSDSVPVAEGLALHFVEHNTERKA 345 Query: 332 IEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA 391 ++ M + + ++ RD + ++ PE H GV GI A+R+ E F RPV F+P Sbjct: 346 VQSNMLQRSAK--QAAQQVRDGA-AAITIFDPEGHAGVHGICAARLAESFGRPVAYFSPK 402 Query: 392 GDGT-LKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFG 450 +G + S R++ G H+RDAL + YP + +GGHA A G++L+ D + F + + Sbjct: 403 AEGQHITASLRTVHGFHVRDALAEIAGRYPDDFVAWGGHAGAGGVTLKRDGLQRFAEAWA 462 Query: 451 ELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQR 510 + L E+V+DGPL A + V + L P+G+ + P+F H R+ Q R Sbjct: 463 AIAASALRDQRAGPEIVTDGPLEVAP-SFAVVEELAALEPFGRQWEPPVFRSHGRIEQVR 521 Query: 511 LVGE-RHLKVMVEPVGGGPLLDGIAFNVDTALW---PDNGV------REVQLAYKLDINE 560 VG+ RHLK++V+ +D + ++ A+W +NGV + V +AY+LD+N Sbjct: 522 PVGDGRHLKLVVK-------MDAMDYD---AIWFGAVENGVCPVGVGQTVLMAYELDVNT 571 Query: 561 FRGNRSLQIIIDNI 574 FR +LQ+ I ++ Sbjct: 572 FRDTTTLQLRIRHV 585 >UniRef50_UPI0001C31CC5 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CC5 Length = 846 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 198/534 (37%), Positives = 279/534 (52%), Gaps = 40/534 (7%) Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 + G++ AVE + R GTRI V GD+D DG STA+ + A+R LG ++ D+ +P+R + Sbjct: 58 EFGGIDVAVETILGHVRAGTRITVHGDYDVDGVCSTAILLRALRQLG-ADADWFLPSRID 116 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP--GDTLPA 170 DGYGL+ V++ ARG +L++TVD I++ V AR+ GI V+VTDHH P LP Sbjct: 117 DGYGLAATTVERLAARGTRLLITVDCAITAVEEVAAARAAGIDVVVTDHHQPRADGRLPD 176 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLAL-RTFLRDQGWFDERNIAIPNLAELLDLV 229 A I++P++ FP L GVA+ L AL R D D+ LDLV Sbjct: 177 AP-IVHPSISGYPFPD--LCAGGVAYKLAQALHRAAGGDPARADDD----------LDLV 223 Query: 230 ALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGP 289 AL TVAD+VPL NR L +G+ R A +PG++AL+ VA D L A +G+ L P Sbjct: 224 ALATVADLVPLRGENRRLVREGL-RALASTAKPGLRALMRVARVDPSGLDAGAVGYRLAP 282 Query: 290 RLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL-E 348 R+NAAGRL GV LLL D+ A +A+ELDA N R+ EQ + EA +L E Sbjct: 283 RINAAGRLYRADAGVELLLTDDEARATAIADELDAANAERRMTEQRILWEAEEQVRELGE 342 Query: 349 RSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRP--VIAFAP-AGDGTLKGSGRSIQG 405 R L G WH GV+GI+ASRI ER +RP +IA P G GT GSGRSI+ Sbjct: 343 RPAYVLAG------EGWHPGVIGIVASRIVERTNRPALLIALDPDTGSGT--GSGRSIRA 394 Query: 406 LHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGE 465 D L L P ++ ++GGH AAGL++ + ++ F L P L Sbjct: 395 F---DLLGALHAAAP-LLERYGGHRAAAGLTIAAGRVAQLREAFEAHAASVLSPEDLVPV 450 Query: 466 VVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGE--RHLKVMVE 522 D + + +E+A+ L P G P P L L+ R +G+ RH + VE Sbjct: 451 ERVDALVGGRALGLELAEELARLEPCGMGNPRPNLLVPAAHLVDVRPMGQEGRHARFSVE 510 Query: 523 PVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 GG +AF+ D L P + ++L+ NE+ G ++++ + P Sbjct: 511 --AGGTRCRAVAFSCDGRL-PVDEQTPADATFRLERNEWNGAVEPRLLLRHATP 561 >UniRef50_A7ZG65 Single-stranded-DNA-specific exonuclease RecJ n=26 Tax=Campylobacteraceae RepID=A7ZG65_CAMC1 Length = 535 Score = 244 bits (624), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 168/551 (30%), Positives = 277/551 (50%), Gaps = 53/551 (9%) Query: 36 RSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAM 95 R ++ + + + L + K + A I +VGD+D DG S+ + Sbjct: 25 RFCNDIHKKLSEIPTPSALKDIYKGANRIKEAIERNEHIAIVGDYDVDGVVSSVILAEFF 84 Query: 96 RSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIP 155 LG N +PNRF+DGYGL+PE++D+ A LI+TVDNGIS++ + GI Sbjct: 85 DDLGVKNYLVKIPNRFKDGYGLNPEIIDEL-ASDVSLIITVDNGISANDAAAICKEKGID 143 Query: 156 VIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDER 215 +I+TDHH+P LP A AIINP DCNFP+ + G VA+YL+ AL+ + Sbjct: 144 LIITDHHMPPAVLPEAYAIINPKQEDCNFPNIEICGAEVAWYLVGALKDVCKLN------ 197 Query: 216 NIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDA 275 ++++ L+L+A+ +AD++ L NR+L G+ ++ A K R + E +D Sbjct: 198 ----YDMSKFLELLAIAIIADMMELRDMNRMLVRMGICKLNASK-RSAFCVIKEFYGKD- 251 Query: 276 QKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQG 335 K D+ F + P +N+AGR+DD L +I EA + + N +RKE E+ Sbjct: 252 -KFECDDISFLIAPLINSAGRMDDAMNSFNFLRAKSIEEAYDYLDTIIEFNNSRKEEER- 309 Query: 336 MQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT 395 Q+ +L + E + G +WH+GV+GI+ASR+ + F +P I F+ G Sbjct: 310 -QLFECSLKDVKEDDEVIITWG-----EQWHEGVIGIVASRLAKHFAKPAIVFS-IDKGR 362 Query: 396 LKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTE 455 KGS RS+ L D L + + + ++ +GGH AAGL+L + ++F E + + Sbjct: 363 AKGSARSVGKL---DILSLIAS-HEDLLTSYGGHKGAAGLTLAPENL----EKFKEEINK 414 Query: 456 WLDPSLLQGEVVSD---GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ-QRL 511 +Q SD G + P+E+ E+ ++L P+GQ P P+F +++ +RL Sbjct: 415 SCSCLNMQECKSSDELLGDIMPSEIDFELLEILEFYEPYGQKNPRPVFKIENAVVKNERL 474 Query: 512 VG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDI------NEFRG 563 +G + HLK++++ L+ + FN R V++ +D+ N FRG Sbjct: 475 IGRDQNHLKLILQK--DNKTLEALFFNF---------TRHVRVGEMVDVIFCVSKNSFRG 523 Query: 564 NRSLQIIIDNI 574 + Q++I I Sbjct: 524 LVTPQLLIREI 534 >UniRef50_A8F1S2 Single-stranded-DNA-specific exonuclease RecJ n=18 Tax=cellular organisms RepID=A8F1S2_RICM5 Length = 608 Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 193/568 (33%), Positives = 289/568 (50%), Gaps = 28/568 (4%) Query: 21 ELPPLLRRLYASRGVRSAQELER----SVKGMLPWQ-QLSGVEKAVEILYNAFREGTRII 75 ++ LL R+ + R V + +E+E +K +LP L +EKAV+ A +I Sbjct: 51 KISDLLARIVSLR-VNNLEEVENFLIPKIKNLLPDPFHLLDMEKAVDRTVTAILNNQKIC 109 Query: 76 VVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVT 135 + D+D DGATS AL R L D VP+R +GYG +P + + G +L++T Sbjct: 110 IFADYDVDGATSAALLKNIFRDLNIL-CDIYVPDRIAEGYGPTPFAMQKIKDNGTELLIT 168 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVA 195 VD G +H +++A+ + + VIV DHH+ + LP A AI+NPN D K LA VGVA Sbjct: 169 VDCGAMAHEALKYAKDVNLDVIVIDHHIATEILPDAVAIVNPNRIDEKSEYKHLAAVGVA 228 Query: 196 FYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 F A+ + L+ Q +F + + PNL + LDLVALGTV D++ L NR G+ +I Sbjct: 229 FLFATAILSNLKKQNYFTQTMLQ-PNLMKYLDLVALGTVCDMMKLTGLNRAFVASGL-KI 286 Query: 256 RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 + GIK L ++A + + LGF LGPR+NA GR+ S+G LL EA Sbjct: 287 MQQRQNIGIKTLYDMAGLN-EIPKCYHLGFILGPRINAGGRVGKSSLGANLLSTSCSNEA 345 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 LA EL+ N RK IE M EA+ + L + +L L + WH GV+GI+A Sbjct: 346 NKLAEELEKHNNERKVIELLMIEEAMEIA--LTQQDSSL---LFIVKEGWHPGVIGIVAG 400 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 ++KE+F +PV A DG K S RSI G+ E ++ +++ GGHAMAAG Sbjct: 401 KLKEKFDKPVAVIA-LNDGIGKASCRSILGIDF--GAEIINAKSKDLLIAGGGHAMAAGF 457 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 ++ DK + Q F ++ D L+ + + + L P+GQ Sbjct: 458 TVTADKLQELQNFFNNAFRISINKLENYKHAEYDIELTVNSVNFPLMEELNTLEPFGQGN 517 Query: 496 PEPL--FDGHFRLLQQRLVGERHLKVMVEPVG---GGPLLDGIAFNVDTALWPD----NG 546 EP+ FD F +L+ +VG +H+K M+ P G L IAFN + D + Sbjct: 518 HEPIFKFDDLF-VLKADIVGSKHIKCMLVPNKRGFGNKALSAIAFNSVGTAFEDVLLSSK 576 Query: 547 VREVQLAYKLDINEFRGNRSLQIIIDNI 574 + + L N ++GN ++Q+II +I Sbjct: 577 AKNIAAIGTLKTNNWQGNYTIQLIIKDI 604 >UniRef50_C0XKS9 Exonuclease RecJ n=3 Tax=Lactobacillus RepID=C0XKS9_LACHI Length = 776 Score = 244 bits (623), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 170/568 (29%), Positives = 294/568 (51%), Gaps = 35/568 (6%) Query: 21 ELPPLLRRLYASRGVRS---AQE-LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIV 76 ++ PL+ + RGV + AQ+ L S K + ++K + + +A +I V Sbjct: 27 KIDPLIASILLQRGVSTEEAAQDFLTPSSKDFHDPYLMHDMKKGIARIQHAVENEEQITV 86 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+DADG TST + + LG N+DY +PNRF DGYG + + + G LI+TV Sbjct: 87 YGDYDADGITSTTIMYEVLNDLGA-NVDYYIPNRFSDGYGPNVDAFKKIINNGTTLIITV 145 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN---FPSKSLAGVG 193 DNG++ + ++ A SL V+VTDHH + LP A AII+P +++ +P L+G G Sbjct: 146 DNGVAGNEAIDVANSLHCDVLVTDHHSLPEVLPNAYAIIHPRVKNQEGQAYPFGDLSGAG 205 Query: 194 VAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMS 253 VA + AL L +L+D+ A+GTVAD+V L NR + G++ Sbjct: 206 VALKVAQALMEDLP---------------IDLIDVAAIGTVADIVSLKDENRAIVKFGLN 250 Query: 254 RIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIG 313 IR + RPG+ AL++ A+ D K D+GF + PRLN+ GR+DD ++GV LL + Sbjct: 251 AIRNTQ-RPGLLALIKAADIDLSKFDEQDIGFGIAPRLNSLGRIDDANIGVELLSTFDDQ 309 Query: 314 EARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGIL 373 +A LA D N +RK + +A+ + E + + L + +WHQGV+GI+ Sbjct: 310 KATELAEFADHQNDSRKSLVDEFYQQAVQMVESSGDAENR--STLVVVGDDWHQGVLGIV 367 Query: 374 ASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMA 432 AS++ E++ RP I G+ +KGSGRS++ + A++ + + FGGH A Sbjct: 368 ASKLVEKYGRPTIVLTSQHGNDQVKGSGRSVESFDLFSAIDPI----RDQTIGFGGHHSA 423 Query: 433 AGLSLEEDKFKLFQQRFGELV-TEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 GL++ +DK + + + + + LD S ++ +S ++ + + L P+ Sbjct: 424 IGLTINKDKISVLKDQLEKAAGNQELDLSQKPTLDIA-AKISADQIDNQFIKNLNVLAPF 482 Query: 492 GQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWP-DNGVRE 549 GQ P+P+F+ + +L+ + +G+ + V L +AF A NG Sbjct: 483 GQDNPKPVFEIEYDQLIDVKTMGKTGDHLRFSLVKNKSRLTAVAFGRGAAAGQLSNGSAS 542 Query: 550 VQLAYKLDINEFRGNRSLQIIIDNIWPI 577 ++++ +++ N + + ++Q+++ ++ I Sbjct: 543 IKVSGEINENTWNNHTTIQLMVSDLKQI 570 >UniRef50_Q30NS6 Exonuclease RecJ n=3 Tax=Epsilonproteobacteria RepID=Q30NS6_SULDN Length = 537 Score = 244 bits (623), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 168/528 (31%), Positives = 280/528 (53%), Gaps = 51/528 (9%) Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 KA + + +A RE +I +VGD+D DG ++TA+ V R + ++ ++PNRF DGYG+S Sbjct: 50 KAAKKIADAIRENKKITLVGDYDVDGVSATAIMVDFFRQIPYP-LEAVIPNRFSDGYGVS 108 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 P ++++ LI+TVDNGI++ E GI +I+TDHH P TLP A AIINP Sbjct: 109 PHLLERI---DTDLIITVDNGITALEAAEICAQRGIELIITDHHTPLTTLPHAYAIINPK 165 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 L C++P + + G VA+ L+ L+ L NI ++ LD++ + +AD++ Sbjct: 166 LSACSYPFQEICGAQVAWLLLALLKKELN-------LNI---DMRSFLDILCIAIIADIM 215 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NR L G+ ++ R + + N+ + +++ D+ F + PR+N+AGRL+ Sbjct: 216 PLTDINRPLVKDGL-KVLMSSNRASCVIIRDFLNK--KNISSEDIAFQIAPRINSAGRLE 272 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 D S+ + L + +A + L++LN++R+E+E EAL++ ++ + Sbjct: 273 DASIALEFLTAQTLNKAYMQFEILNSLNESRRELEAEATKEALSIANGNDKV-------I 325 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + EWH+GVVGI+A+R+ E + RP I +G KGS RS+ +++ +E Sbjct: 326 VVAKEEWHEGVVGIVAARVAEHYTRPTIVLT-LENGVAKGSARSVGNVNIHKLIEE---- 380 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEW-LDPSLLQGEVVSDGPLSPAEM 477 + KFGGH MAAGL+L E F+ E ++ LD L EV+ G + ++ Sbjct: 381 NSHFLRKFGGHKMAAGLTLNEKDIDAFRVAINESASKLSLDDFLSLDEVI--GVVPSNQI 438 Query: 478 TMEVAQLLRDAGPWGQMFPEPLF---DGHFRLLQQRLVGE--RHLKV-MVEPVGGGPLLD 531 +E+ LL P+G+ PLF D +L+ + G+ H KV +++ +L+ Sbjct: 439 DLELLALLESFEPYGEANKRPLFLIRDA--SILEVKTFGKDSSHSKVKIMQSNEESSILE 496 Query: 532 GIAF----NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 I F N+ TA ++ +Y++ NEF S Q+IID I+ Sbjct: 497 LIQFKKILNLSTA-------DKLTCSYRVVKNEFNSKISAQLIIDKIY 537 >UniRef50_A8SRX9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SRX9_9FIRM Length = 630 Score = 244 bits (622), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 179/604 (29%), Positives = 301/604 (49%), Gaps = 76/604 (12%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEK----AVEILYNAFREGTRIIVV 77 + P++ R+ +RG+ + + G G+ K I+ + G+RI ++ Sbjct: 38 IDPVVARVITNRGICGDDNINMYLNGGADLLHDPGLMKDLPEGCRIVMDKLENGSRIRII 97 Query: 78 GDFDADGATSTALSVLAMRSL----------GCSNIDYLVPNRFEDGYGLSPEVVDQAHA 127 D+D DG TS + +L +R + C +DY +P+R DGYG+ ++D A A Sbjct: 98 SDYDVDGVTSNYILLLGLRKVWAQIHGARPEECEIVDYDIPHRIHDGYGIKNRLIDAAKA 157 Query: 128 RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH-LP----GD-----TLPAAEAIINP 177 G I+T DNGI++ +++A+++G+ VIVTDHH +P GD TLP A+A+I+ Sbjct: 158 DGVDTIITCDNGIAAFEQIKYAKTIGMTVIVTDHHQVPYQENGDGTKTYTLPPADAVIDN 217 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 DC +P K L G GVA + +L DER I E +++ L T D+ Sbjct: 218 QRVDCQYPFKGLCGAGVACKFI----QYLYRLCGIDEREI-----QEFFEVLGLATNCDM 268 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 + L NRI + ++ + PG+ AL+ ++ ++ +K+ DLGF +GP +NAAGRL Sbjct: 269 MDLVDENRIFVKYALESLKDSR-NPGLNALMRLSGKNEKKITTYDLGFLIGPCINAAGRL 327 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEI-EQGMQ-----IEALTLCEKLERSR 351 D + LL N +A A EL +N RK + E G++ +E T+ ++ + Sbjct: 328 GDARTSLEFLLEKNAAKAETKAAELIQINNDRKSMTENGVKLITKMLEDATIAGEIGDTA 387 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRD 410 + Y P+ H+ VVGI+AS++KE + RPV+ F + G LKGSGRSI+ +M + Sbjct: 388 TLADHVIVAYIPDVHESVVGIIASKLKEAYSRPVMIFTDSEHAGILKGSGRSIESYNMYE 447 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGE---LVTEWLDPSLLQGEVV 467 L R+ + + +FGGHAMAAG S+E + ++ E L E + P + + Sbjct: 448 HLSRVKSYFR----EFGGHAMAAGFSIESSRLGELRRVLNEQCALTDEDITPKV---RID 500 Query: 468 SDGPLSP-AEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGE-RHLKVMVEPV 524 PL A +M + + L P+G+ + LF + + + ++G+ R+L +V + Sbjct: 501 VGMPLQYLARQSMRITEQLYLLEPYGKGNRKALFGQANVPVRKASILGKNRNLLKLVLDI 560 Query: 525 GGGPLLDGIAFNVDTALWPDNGVRE-------------------VQLAYKLDINEFRGNR 565 G ++ I F+ D + N +++ + + Y +INEFR R Sbjct: 561 GENQYMEAIYFDPDEFV---NNIKQWFGADECDKMLNGRPNKVVIDMVYYPEINEFRNTR 617 Query: 566 SLQI 569 ++QI Sbjct: 618 NVQI 621 >UniRef50_C0WCD6 Exonuclease recJ n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCD6_9FIRM Length = 778 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 163/448 (36%), Positives = 248/448 (55%), Gaps = 26/448 (5%) Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAM-RSLGCSNIDYLVPNRFEDGY 115 +E+AV + A + +I + GD+D DG ++++L L + ++LG Y +P R +GY Sbjct: 65 MERAVTRICEALSKEEKITIYGDYDVDGTSASSLFFLFLTKNLGAKAAVY-IPRRDTEGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL+ E +++ +A G+ L++TVD GIS ++ A + G+ VI+TDHHL LP A ++ Sbjct: 124 GLNLEALEKIYAGGSTLVITVDTGISGADVIKKAPT-GLDVIITDHHLAPQELPPAYTVV 182 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQG--WFDERNIAIPNLAELLDLVALGT 233 NPN ++P K + G GVAF L AL + W D L++L A+ T Sbjct: 183 NPNQPGDSYPEKGICGCGVAFKLCQALWQHFHPESALWTD-----------LIELAAVAT 231 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 VADVVPL NR + +G+ +I A G++AL++ A R+ + + +GF +GPR+NA Sbjct: 232 VADVVPLVGENREIVRRGLKKI-ANTSLVGLRALIQSATREGSPITSDTIGFGIGPRINA 290 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGRLDD + V LL+ + EA+ L+ EL+ LN R+EI Q + EA + L S Sbjct: 291 AGRLDDAMLAVKLLITSDSEEAKTLSRELNDLNAKRQEISQRIFEEAEAM---LTASGKV 347 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 G+ + WH GV+GI+ASR+ E++H P I + DG KGS RSI +H+ ALE Sbjct: 348 PTWGIVLAKEGWHPGVIGIVASRLTEKYHEPTILMS-IKDGIAKGSCRSIPPVHLYHALE 406 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 +++FGGHA AAGL++E DK + F E V L + + EV D + Sbjct: 407 ACRL----ALIQFGGHAQAAGLTMEADKVDELRHLFTETVKTALHGEIYEPEVEPDYFIP 462 Query: 474 PAE-MTMEVAQLLRDAGPWGQMFPEPLF 500 E +T ++ L P+GQ P P+ Sbjct: 463 EGEAVTEKIVHELERLQPFGQNNPAPIL 490 >UniRef50_B0MLV1 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MLV1_9FIRM Length = 672 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 178/564 (31%), Positives = 289/564 (51%), Gaps = 43/564 (7%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLPWQQL--SGVEKAVEILYNAFREGTRIIVVGD 79 LP LL L SRG+ +A++ ++ G L + ++KAV+ + A +I V GD Sbjct: 23 LPMLLCSLLVSRGIYTAEQAQQYFNGTELSDPLLIADMDKAVQAIEEAVDNEVKITVYGD 82 Query: 80 FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139 +D DG TST + + ++G +++++ +P R E+GYGL+ + + H G LI+TVDNG Sbjct: 83 YDCDGVTSTVMLFTHLDAIG-ADVNWYIPTR-EEGYGLNENAIRKLHEDGTGLIITVDNG 140 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199 +S+ E LG+ ++VTDHH + LP AEAI+NP+ +D N P K LAG GVA L+ Sbjct: 141 VSAVNEAELIYELGMKLVVTDHHQLPEILPKAEAIVNPHRQDDNSPYKELAGCGVALKLI 200 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 +AL ER++ L + DL A+GT+ DVV L NRI+ +G+ ++ + Sbjct: 201 MAL-----------ERDVE-GVLEQYADLAAIGTIGDVVALTGENRIIVKRGLLEMQYSE 248 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 G++AL+ A DA+ + ++ + F L PR+NAAGR D LL+ A + A Sbjct: 249 -NQGLQALINAAGLDAESITSTGIAFGLCPRINAAGRYDSPKAAAELLMAQTGQIAEIKA 307 Query: 320 NELDALNQTRKEIEQG---MQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 EL+ LN RK+IE M L K SR + G W+ G++GI+++R Sbjct: 308 QELNELNAKRKQIESDILEMAKAQLIADPKAFNSRVLIVCGEG-----WNHGIIGIVSAR 362 Query: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 + E + +P I GD +GS RSI+G + AL+ + +FGGH AAG S Sbjct: 363 LLELYEKPCIVIGIEGDEA-RGSARSIEGFSLYTALDACSE----HLTRFGGHTKAAGFS 417 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQL--LRDAGPWGQM 494 L +DK F + E PS+ + ++ + P +E++ + LR P+G+ Sbjct: 418 LPKDKVDDFIAQLRSYADEKF-PSM--PVMTTEADIEPELSDLEISSIENLRHLQPYGEE 474 Query: 495 FPEPLF-DGHFRLLQQR-LVGERHLKVMVEPVGG--GPLLDGIAFNVDTALWPDNGVREV 550 PLF + ++ R L ++ E G L G +F+ +P + +V Sbjct: 475 NNAPLFLMRNCTIISSRPLKDGKYTSFSAEYKGSQFKFLCFGTSFD-KFGYYPGD---KV 530 Query: 551 QLAYKLDINEFRGNRSLQIIIDNI 574 + ++INE+ +S+ + + +I Sbjct: 531 DVLSHIEINEYNDKKSVSVRVKDI 554 >UniRef50_C6XG71 Single-stranded-DNA-specific exonuclease protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XG71_LIBAP Length = 600 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 198/577 (34%), Positives = 308/577 (53%), Gaps = 44/577 (7%) Query: 22 LPPLLRRLYASRGVR---SAQELERSVKGMLPWQQ-LSGVEKAVEILYNAFREGTRIIVV 77 +P ++ R+ +R V + L S++ ++P L+ +KA + A +I++ Sbjct: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 Query: 78 GDFDADGATSTALSVLAMRSLG-CS-NIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVT 135 GD+D DGA S AL MR L CS N + +P+R DGYG +P ++++ GAQLI+T Sbjct: 99 GDYDVDGAASVAL---MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHH-LPGDTLPAAEAIINPNLRDCNFPSKSLAGVGV 194 VD G +S+ +++A + GI VIV DHH + + +P A A++NPN D L GV Sbjct: 156 VDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP-AYALVNPNRLDDLSGQGHLCAAGV 214 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 F +++ + LR D + +L LLDLVAL TV DVVPL NR +G+ Sbjct: 215 VFLVLVLIYRILRQ----DNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMV 270 Query: 255 IRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 R + PG+KAL+E N + + A +LG+ +GP +NA GR+ + ++G LL+ D+ E Sbjct: 271 ARR-QGNPGLKALIERVNI-SSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQE 328 Query: 315 ARVLANELDALNQTRKEIEQGM--QIEA--LTLCEKLERSRDTLPGGLAMYHPEWHQGVV 370 +LA +LD LNQ R+ +E M Q EA LT C+ ++++ + G WH G+V Sbjct: 329 LEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG-----DRWHPGIV 383 Query: 371 GILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHA 430 G+LA+R+KE+F RP A + DG GSGRSI+G + + + G+++K GGHA Sbjct: 384 GLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHA 441 Query: 431 MAAGLSLEEDKFKL---FQQRFGELVTEWLDPSLLQGEVVS-DGPLSPAEMTMEVAQLLR 486 MAAGL++E F F Q+F + P+L+ V DG L+ + + + + +L Sbjct: 442 MAAGLTVERVNFGRLCDFFQKFAHNIV----PALITTPVFKIDGVLNASAVNIALIDMLE 497 Query: 487 DAGPWGQMFPEPLFDGHFRLLQQ-RLVGERHLKVMVEPVGGGPLLDGIAFNVDTA----- 540 AGP+G P P+F LQ R+V HL++ E L IAF V Sbjct: 498 SAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEF 556 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 L G R + + L +N +RG++ Q+ + + P+ Sbjct: 557 LMQSRGKR-MHVTGHLCVNYWRGSKRCQLRVLDASPV 592 >UniRef50_A5FQT9 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Dehalococcoides RepID=A5FQT9_DEHSB Length = 566 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 180/566 (31%), Positives = 285/566 (50%), Gaps = 42/566 (7%) Query: 23 PPLLRRLYASRGVRSAQELERSVKGMLPWQQLS-------GVEKAVEILYNAFREGTRII 75 PPL+ RL +RG+ + +E + + P ++L+ +E AV +Y A G +I+ Sbjct: 26 PPLISRLLYNRGITT---IEAADLFLSPDKRLNHDPFLFPDMEMAVSRIYKALLAGEKIV 82 Query: 76 VVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVT 135 V GDFDADG T+TA+ + LG N+ +P+R +GYGL +++ A G L+++ Sbjct: 83 VYGDFDADGLTATAVLTTGIARLG-GNVTPYIPHRITEGYGLKISALEKHRAEGVSLVIS 141 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVA 195 D GI++ ++ A +G+ VIVTDHH P D LP A AIINP + +P K LAGVGVA Sbjct: 142 TDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAYAIINPKMPCSTYPCKELAGVGVA 201 Query: 196 FYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 + L+ AL R+ G DE +LLDLVA+GTVAD+VP+ NR L +G+ + Sbjct: 202 YKLIQAL---YRNLGREDEAK-------DLLDLVAIGTVADIVPILDENRYLVKEGVKLL 251 Query: 256 RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 A + RPG+ + +++ ++ + + + PRLNAAGRL+ G LL I ++ Sbjct: 252 NA-EPRPGLIEMAQLSRLHLGEIETESISWIMAPRLNAAGRLEHAMAGYKLLTATTISDS 310 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT-LPGGLAMYH-PEWHQGVVGIL 373 + LA L+ N R+++ + EK DT P L ++ E QG+ G++ Sbjct: 311 QELALWLENKNTERQQL-------TVRFVEKARAMLDTQFPPALLIFSDAECPQGISGLV 363 Query: 374 ASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAA 433 A R+ + ++RP I D GS RSI ++ AL L+ FGGHA AA Sbjct: 364 AGRLSDEYYRPSIVIKTNADSA-TGSCRSIPDFNIIQALNHFAHLFS----HFGGHAQAA 418 Query: 434 GLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQ 493 G +L + F Q E L L+ + D + + + L P+G+ Sbjct: 419 GFTLPIENLDAFVQGISAYAEEILSVMELKPFIDIDIDTDLSLLCPATLRELERLAPFGE 478 Query: 494 MFPEPLFDGH-FRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREV 550 P+P+F + R +G HLK+ ++ G DG+AF L V Sbjct: 479 ANPKPVFLSRGLNITDYRSMGSNNEHLKLRIK--HKGRFWDGVAFRQAKEL-SSFLQSPV 535 Query: 551 QLAYKLDINEFRGNRSLQIIIDNIWP 576 + Y L+++++ G +L++ I ++ P Sbjct: 536 DIVYNLELDKWCGTDTLRLKIIDMAP 561 >UniRef50_Q6MKZ4 Single-strand DNA-specific exonuclease n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MKZ4_BDEBA Length = 575 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 165/572 (28%), Positives = 288/572 (50%), Gaps = 31/572 (5%) Query: 16 ADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREG 71 +++ + P L+ ++ A+RG A +E+ + L + L G+ +A+E L A+ Sbjct: 18 SNVEGQWPKLITKVLAARGFAEASHVEKLLFPKLADLKDPLVLKGMSQALERLGQAYLNK 77 Query: 72 TRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQ 131 +I + DFD DG + AL M +LG ++ + P R +GYG V++ +G Sbjct: 78 EKICIYADFDLDGTSGLALLKTGMLALGFPDVLHYQPKRLAEGYGFHAHAVEELKKQGVS 137 Query: 132 LIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAG 191 LI+TVD GI++HA ++ A LG+ VI+TDHHLP DT+P+A ++NPN DC L G Sbjct: 138 LIITVDVGITAHAAIDKANELGVDVILTDHHLPADTIPSAFVVVNPNQGDCPSGLGYLCG 197 Query: 192 VGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQG 251 GVAFYL+ L+ D + N +L E+LD +GT+ D+VPL +NR+L G Sbjct: 198 AGVAFYLLRGLKRHFHDHPQLPKNNW---DLKEVLDYFTIGTLTDMVPLVDDNRVLVKHG 254 Query: 252 MSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 + ++ K R G++ALLE + + L + D+ P+LNA R++ + + + L D+ Sbjct: 255 LVKLAETK-RAGLRALLEELDLTGRPLTSQDVAIRFAPKLNALSRMESGILPIDIFLLDD 313 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVG 371 +AR + ++ N TR +++ + EA L + + +H+GV+G Sbjct: 314 PSQARDMVRQVMKNNSTRVQLQGDAEAEAQQLLQGWPHQDFVF-----VASRNFHRGVLG 368 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 ++A+++ + +++P A DG + GS R QG L + ++ +FGGH+ Sbjct: 369 LIATKLTQVYNKPAFVGAVGDDGMIVGSARLPQG--QEACLVEAMSSAQELLSRFGGHSA 426 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLD-PSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGP 490 AAG + E K F + + ++ + P L E+ D +E++ + + GP Sbjct: 427 AAGFEIAETKVSTFVGKLADHFSDLREKPKPL--EIFYDVEAGLSEVSEALMKWYDFVGP 484 Query: 491 WGQMFPEPLFDGHF---RLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN-----VDTALW 542 +G F PL HF ++L +R + HL++ + GG + + F +DT Sbjct: 485 FGAGFSIPLI--HFTNVQVLSKRELKGGHLRLKIADADGGASAEALLFTPTPRQLDTL-- 540 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 N + +L N F G +++QI+I ++ Sbjct: 541 -TNVPGFYHVLGELQWNYFAGQKTVQILIRDL 571 >UniRef50_Q0API9 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Maricaulis maris MCS10 RepID=Q0API9_MARMM Length = 603 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 187/576 (32%), Positives = 291/576 (50%), Gaps = 44/576 (7%) Query: 21 ELPPLLRRLYASRGV---RSAQELERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIV 76 +P L R+ A+RGV ++A L ++ P + ++KA ++++A + V Sbjct: 45 SIPDALARVMAARGVAPDQAAAFLSPRLRDSFPDPSDFADMDKAAGLVWDAIEAERPMAV 104 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 D+D DGATS A + R + Y VP+R E+GYG S D ARGA+L++TV Sbjct: 105 FADYDVDGATSAAQLIRYFRHFDRTAEIY-VPDRVEEGYGPSGTAFDTLKARGAELVITV 163 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D G ++ + HA S+G+ VIV DHHL D +P A A++NPN D LA GV F Sbjct: 164 DCGAAARIALTHAASIGLDVIVIDHHLMDDDMPPAAALVNPNRPDDRSGCGHLAAAGVTF 223 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 + AL R +G N P+L + +DL ALGT+ DVVPL NR +T QG+ + Sbjct: 224 VFLAALNREGRRRGTITPDN--EPSLLDWIDLAALGTICDVVPLTGVNRAITAQGLKAM- 280 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 +G G++ L E + D + + GF +GPR+NA GR+ +G LL ++ AR Sbjct: 281 SGWRHLGLRCLAETSGVDGEA-STYHAGFLIGPRINAGGRVGRADLGATLLTTEDETLAR 339 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 +A ELD LN R+ IE + A + R L WH GV+G++A R Sbjct: 340 RIAGELDGLNSERRAIEADVLEAASAQLDGQSADRAI----LIAAGEGWHPGVIGVVAGR 395 Query: 377 IKERFHRPVI-------AFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGH 429 +KERF +PVI A P G KGSGRS+ G+++ A+ G++ GGH Sbjct: 396 LKERFDKPVIVIGIDREARPPVG----KGSGRSVPGVNLGGAIAA--AREAGLLTSGGGH 449 Query: 430 AMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAG 489 AMA GLS++ D+ E + L + + +DG L+ + +++++A++L A Sbjct: 450 AMAGGLSMDPDRITELVAFLDERLAPELAAAADDMALKADGVLTASGVSLDLARMLERAA 509 Query: 490 PWGQMFPEPLFD-GHFRLLQQRLVGERHLK-VMVEPVGGGPLLDGIAFNVDTALWPDNGV 547 P+GQ EP F R+ + VG H++ + +P G +DGI F D + Sbjct: 510 PFGQGNAEPRFALPDMRVSFAKRVGTDHVRFTLSDP--DGRRVDGICFRC-----ADTPI 562 Query: 548 REVQLAY---------KLDINEFRGNRSLQIIIDNI 574 E LA +L ++ ++G +Q+ ++++ Sbjct: 563 GEALLAAGPGLFHAFGRLKLDAWQGRERVQLHLEDL 598 >UniRef50_B1ZV73 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Verrucomicrobia RepID=B1ZV73_OPITP Length = 573 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 184/531 (34%), Positives = 281/531 (52%), Gaps = 26/531 (4%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L V+ A L A ++V+GD+D DG +STAL V +R G ++VP R ED Sbjct: 58 LRNVDAAATRLRQAIANQESVVVLGDYDVDGVSSTALLVSVLRRFGLLP-RFVVPRRSED 116 Query: 114 GYGLSPEVVDQAHARG-AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 GYGLS +D+A G L V +D G +SH V + R GI VIV DHH + Sbjct: 117 GYGLSRSAIDRALEGGRPHLFVVLDCGTNSHDEVAYLREQGIDVIVLDHHRSKERALDG- 175 Query: 173 AIINPNL-RD---CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDL 228 +INP++ RD + P + L VG+ F L L LR + I L + LDL Sbjct: 176 MLINPHVHRDDTGADGPWRHLCTVGLVFKLAHGLLKQLRAENHPVAFRI---KLRDHLDL 232 Query: 229 VALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVAN-RDAQKLAASDLGFAL 287 VALGTVAD+VPL NRIL G++ ++ + RPG++AL+EVA + + D+ F L Sbjct: 233 VALGTVADLVPLLGENRILARHGLTILQESR-RPGLRALMEVAGVKPENGINPVDISFRL 291 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 GPR+NA+GRL D ++ V LLL +++ + A +LDA N+ R+EIE+ + EA E+L Sbjct: 292 GPRINASGRLADAALSVELLLSEDLAFCQQTAQQLDAFNRERQEIERKITEEA----EQL 347 Query: 348 ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLH 407 + G+ ++ +WH GVVGI+A R+ +++RP + G+ KGSGRSI GL+ Sbjct: 348 IETHYADSPGIVLFSEDWHPGVVGIVAGRVTRKYNRPCVVLGNEGEFA-KGSGRSIDGLN 406 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 + +E L T ++ +GGH MA G++L ++ +F+++F V ++ + + Sbjct: 407 L---VEVLGTCC-DHLVSWGGHPMAVGIALRKEHLPVFREQFAAAVRTQAGDAIAEARLE 462 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ--RLVGERHLKVMVEPVG 525 L+P ++T + L P+GQ EP F +L+ + H + E Sbjct: 463 LAAWLTPEQITPRLMDELEQLHPFGQGNAEPRFGVRGVVLRTAPEIFKTFHFRFNFED-Q 521 Query: 526 GGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 G L G+A+ + + L P GV V LA +L N F + LQ+ + + P Sbjct: 522 RGRRLHGVAWKMASRLLP-VGV-PVDLAVELKWNHFNDRKFLQLCLVDWRP 570 >UniRef50_C7MMI3 Single-stranded-DNA-specific exonuclease RecJ n=4 Tax=Coriobacteriaceae RepID=C7MMI3_CRYCD Length = 1134 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 175/568 (30%), Positives = 291/568 (51%), Gaps = 42/568 (7%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLP--WQQ---LSGVEKAVEILYNAFREGTRIIV 76 LP + +RG+ S QE ++ L W + G+++ V L A R G RI+V Sbjct: 41 LPRFIAATLVARGISSPQEAGEFLRPSLARDWGNPYCIPGMDEVVGGLEAAVRSGKRIMV 100 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GDFD DG +STA+ +R LG + + +P R ++GYG++ +++ L+VTV Sbjct: 101 FGDFDLDGISSTAVLTRGLRELGGEVVPF-IPRRQDEGYGITEAAIERLMKDEPDLLVTV 159 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D GI+ V ++ G+ V +TDHH P D +P + +P + D + LAGVGVA Sbjct: 160 DCGIACRNEVRLLKNRGVDVFITDHHEPADLVPEEVPVCDPKI-DPDCSESILAGVGVAL 218 Query: 197 YLMLAL-RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 L+ AL F + W E DL LGT+AD++P+ +NR L G++ + Sbjct: 219 KLIQALGARFGQPHLW-----------REYTDLATLGTIADLMPMQQDNRALVADGVAHM 267 Query: 256 RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 RP I ALL A + ++++ L F++ PRLNAAGR+ D + + LLL D+ A Sbjct: 268 NESP-RPCIAALLHSAGVADKPVSSTSLSFSVIPRLNAAGRMGDAMLALNLLLEDDAHRA 326 Query: 316 RVLANELDALNQTRKEIEQGM-QIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILA 374 + +A +L+A+N R+ IE + +I L E + R + G WH+GV GI+A Sbjct: 327 QDIAADLEAVNSQRRAIEAELAEIATLQAQEIYQGQRALIVAGEG-----WHEGVKGIVA 381 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 SR+ + P I FA +G +GSGRS+ +++ A+E M+++FGGH A G Sbjct: 382 SRLARSYGVPTILFAIDEEGIARGSGRSVGSVNLFKAVESCSD----MLIRFGGHEAAVG 437 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 ++L F +R + + LD + + D ++ E+T+E + L P+GQ Sbjct: 438 VTLSAADLPAFTKRLCAFM-DGLDKNCFHPRIDIDACVNLDELTVENVEALEQLAPFGQG 496 Query: 495 FPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFN---VDTALWPDNGVR 548 +P + + L + R VG + H ++ G + GI F+ +D + D+ Sbjct: 497 NRQPTYLAQNVMLTRSRAVGADKNHFSTVL--TDGAHTVSGIMFHCAYIDRLMHCDS--- 551 Query: 549 EVQLAYKLDINEFRGNRSLQIIIDNIWP 576 V +++ ++E+RG RS++ ++ +I+P Sbjct: 552 VVNAGFEVQVDEWRGRRSVKAMLSSIYP 579 >UniRef50_Q6MEM6 Putative ssDNA-specific exonuclease n=2 Tax=Parachlamydiaceae RepID=Q6MEM6_PARUW Length = 594 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 167/557 (29%), Positives = 284/557 (50%), Gaps = 23/557 (4%) Query: 21 ELPPLLRRLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREGTRIIV 76 +L P++ ++ SRG S Q++ + LP ++ + +AVE + A R+ I++ Sbjct: 31 KLHPVIAQILVSRGFTSFQQIHDYLYAKLPELHDPFLMAEMPQAVERVCRAIRDHENILI 90 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD D DG T T L ++ LG +N+ + V NR L E ++ A +L++TV Sbjct: 91 YGDNDVDGMTGTTLLTEFLQDLG-ANVFFYVSNRGALRQSLIVEALEYALINNCKLLITV 149 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D GI++ + + + VI+TDHH P D +P A +NP L + +P++ L GVGVAF Sbjct: 150 DCGITAAVEIAKVAAQNVDVIITDHHEPTDKIPHCVATLNPKLVNNPYPNRDLTGVGVAF 209 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV-VPLDANNRILTWQGMSRI 255 L + L +G I +L + LDLVALGT++D+ LD NRIL G+ ++ Sbjct: 210 KLAHGITNQLTSEGKIPPSKI---DLKKYLDLVALGTISDMGSLLDTENRILVRYGLRQL 266 Query: 256 RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 R GK R G+ L + + D L + + PRLN+ GR+ D GV +LL N A Sbjct: 267 RKGK-RMGLAKLFSICDVDLNDLNTFTIASKIAPRLNSLGRIADPRKGVQMLLVKNADLA 325 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 +A ELD N R++IE+ M + + +++ + M +WH GV+ IL++ Sbjct: 326 EKMALELDLNNIERQKIERTMSSDVDSTIQQIPAILSN--KAIVMVSDKWHPGVIAILST 383 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 RI ++++RP + A G KGS RSI+ + L+ +++ FGGH AAGL Sbjct: 384 RISKQYNRPTVMIA-IDKGIGKGSIRSIREFPLLPTLKECS----DILINFGGHDFAAGL 438 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 +++E+ + F+ F + L + + ++ D + +E+T + + R P+G Sbjct: 439 TIKEEHVEQFKNHFIASANKKLADTDVMSKLYLDAEIKFSELTFDFIESARLLEPYGNEN 498 Query: 496 PEP-LFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAY 554 P+P L+ ++ ++VG+ HLK+ +E G +L+G+A T +R+ L Sbjct: 499 PQPILYCDAWQTWPPKIVGKTHLKLYLE--QGDRVLEGVALGKATY---SQQLRKKNLKL 553 Query: 555 KLDINEFRGNRSLQIII 571 ++ S+Q++I Sbjct: 554 RIAFTPQINKSSIQLLI 570 >UniRef50_UPI00016B257B single-stranded-DNA-specific exonuclease RecJ n=5 Tax=candidate division TM7 RepID=UPI00016B257B Length = 548 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 159/439 (36%), Positives = 239/439 (54%), Gaps = 36/439 (8%) Query: 25 LLRRLYASRGVRSAQ---------ELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRII 75 L ++ ASR + + +LE+ +LP Q KAV+ + A+ +G +I+ Sbjct: 3 LFEKILASRNIDKDKLNSFLSPDYDLEKGDPYLLPDMQ-----KAVDRIKTAYEKGEKIV 57 Query: 76 VVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVT 135 + GD+D DG ++TAL + A S G +I +PNRF +GYG++ VD+ + A LI+T Sbjct: 58 IYGDYDVDGISATALLLDAFESFGFKDIQSFIPNRFVEGYGMTIGAVDKIKSMDANLIIT 117 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVA 195 VD G H + +A SLGI +VTDHH +T P A A +NP +P LAGVGVA Sbjct: 118 VDCGSLCHNEINYANSLGIDTVVTDHHNVAETPPPAVAAVNPRFGGHLYPFSDLAGVGVA 177 Query: 196 FYLMLALRTFLRDQGWFDERNIAIPNLAE--LLDLVALGTVADVVPLDANNRILTWQGMS 253 F L+ AL+ L +P E LLDLVALGTV D+V L NR + G+ Sbjct: 178 FKLVQALQKELD----------GLPEGYEKWLLDLVALGTVCDIVKLTGENRANVYWGIE 227 Query: 254 RIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIG 313 ++ + R G+KAL+ VAN D ++A LGF GPR+NAAGR++ S+ + +L+ N Sbjct: 228 VMKKQR-RTGLKALMAVANIDKADISAKTLGFVFGPRINAAGRMETASLALDMLISKNGD 286 Query: 314 EARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGIL 373 +A AN +D LN R++++ + EA + L+ D + L + W+ G++GI+ Sbjct: 287 DALNKANYIDNLNSHRRQMQDDIFKEACKIA--LDYKDDDV---LVINGKNWNHGIIGIV 341 Query: 374 ASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAA 433 A++I E+F +PV A +G KGS RS + +++K GGHA AA Sbjct: 342 AAKILEKFKKPVYILAENDNGETKGSARSFGDF----SAADAVRAADDIIIKGGGHAAAA 397 Query: 434 GLSLEEDKFKLFQQRFGEL 452 G++L+ DK F+QR E Sbjct: 398 GVTLKNDKISDFRQRVNEF 416 >UniRef50_Q2JN66 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Synechococcus RepID=Q2JN66_SYNJB Length = 890 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 172/510 (33%), Positives = 279/510 (54%), Gaps = 29/510 (5%) Query: 24 PLLRRLYASRGVRSAQELERSVKG-----MLPWQQLSGVEKAVEILYNAFREGTRIIVVG 78 P+L ++ +RG+ S +++ ++ P + + + AV++L A R I + G Sbjct: 30 PILAQILLNRGLSSPAAVQQYLQPDPAHLPPPSRDFADLPLAVDLLDGAIRRQEPIAICG 89 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+DADG TSTAL +R+L + + Y +P+R +GYGL+ +V + H G +LI+TVDN Sbjct: 90 DYDADGMTSTAL---LLRALQDAPVHYRIPSRMTEGYGLNSRMVQELHREGVRLILTVDN 146 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 GIS+H ++ A++LG+ VIVTDHH LP A+AI+NP + P + +AGVGVA+ L Sbjct: 147 GISAHEPIQLAKALGLTVIVTDHHDLPPQLPPADAILNPKQLPVSSPYRGMAGVGVAYLL 206 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 AL +G + +A L+L +GT+AD+ PL NR+ QG+ + Sbjct: 207 AQAL---AERRGDGHLQRVA-------LELFTVGTIADLAPLTGVNRLWVRQGLHLLPTS 256 Query: 259 KCRPGIKALLEVANRDA--QKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 + GI+ALL+V + L +GF LGPR+NA GR+ +G+ LL D+ +A Sbjct: 257 QVA-GIRALLQVMGMQGSLEGLRPEWIGFGLGPRINAVGRIGRARMGIQLLTTDDPLQAE 315 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLER--SRDTLPGGLAMYHPEWHQGVVGILA 374 LA + LNQ R+++ ++ EAL + R ++ + L WH+GV+GI+A Sbjct: 316 KLARRCERLNQVRQQMCGRIEAEALEQIAQQGRDLQQERVLTILGSPQRRWHKGVIGIVA 375 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 SR+ ERF PV + + G + GS R QG+ D + L+ + K GGH A G Sbjct: 376 SRLAERFGCPVFIGSQSRQGEISGSAR--QGIPEFDVFQALE-FCKDLFTKHGGHPAAGG 432 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 SL + + F++R + + L P +Q V D +S +++T+++ + L+ P G Sbjct: 433 FSLRAEDWPFFEERLRQFAQQQLQPEQIQPLVQIDAEVSLSDLTLDLYRELQHLQPCGIG 492 Query: 495 FPEPLF-DGHFRLLQQRLVG--ERHLKVMV 521 PEP+F + ++LQQ+ G HLK+++ Sbjct: 493 NPEPVFYSRNLQVLQQQRFGPVPGHLKLLL 522 >UniRef50_C7HTZ0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HTZ0_9FIRM Length = 581 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 173/541 (31%), Positives = 276/541 (51%), Gaps = 53/541 (9%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L +EKA++++ G I + GD+D DG +ST +++L +I Y +P+R D Sbjct: 63 LKDMEKAIDLIIETMENGESIRIFGDYDQDGISST-MTLLDGLLYFYDDISYDIPDRVID 121 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT------ 167 GYG+S ++D+A L++T DNGI++ V+ + GI VIVTDHH Sbjct: 122 GYGISDRMIDRAIEANVSLVITCDNGITAIDQVKKLKENGIKVIVTDHHQVSKKEDGEWV 181 Query: 168 ---LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAE 224 LP A+ +INP D +P L G GVAF L+ AL + R G + L Sbjct: 182 EQILPQADCVINPKRLDNTYPFDDLCGAGVAFKLIQAL--YQRLDG-------DMEYLYG 232 Query: 225 LLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLG 284 LL+ VA+GTV DVV L NRI +G+ RI + + IKAL+E N ++++A LG Sbjct: 233 LLEYVAMGTVCDVVSLTDENRIFVREGLKRINNTE-KLAIKALVE-ENSWNREVSAYTLG 290 Query: 285 FALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLC 344 F +GP +NA GRL + + +L+ D+I + R A +L +LN RKE+ + L + Sbjct: 291 FIIGPCMNATGRLSTAKLAIDMLMEDDIEKIRTYAKKLVSLNTERKELTNIGLEKTLEII 350 Query: 345 EKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG-DGTLKGSGRSI 403 + + D + + + + + GI+A RIKE+F++P I + +G LKGSGRSI Sbjct: 351 KDKKYYNDDI---IIVDVENIEESICGIIAGRIKEKFNKPTIIMTQSSQNGILKGSGRSI 407 Query: 404 QGLHM-RDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLL 462 + ++ ++ E D L FGGH MA GLS+ DK + F+Q+ D S L Sbjct: 408 EAYNIYKEVFEIKDILES-----FGGHPMACGLSIRSDKVEEFRQKLN-------DKSKL 455 Query: 463 QGE-----VVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERH 516 + + + D + ++++E A+ L+ P+G+ P+ F D + + ++G+ + Sbjct: 456 KKDDFVNIINIDAQIPIDKLSLEFAESLQRLEPFGKDNPKAKFADKNLFIKNINMIGKNN 515 Query: 517 LKVMVEPVGGGPLLDGIAFNV--DTALWPDN------GVREVQLAYKLDINEFRGNRSLQ 568 + + G ++ I FN D D G R + + DINEF G R+LQ Sbjct: 516 NTMKMILNKNGRDIEAIKFNAQKDYKYLSDKFKANIIGNR-IDAVFYPDINEFNGRRNLQ 574 Query: 569 I 569 + Sbjct: 575 V 575 >UniRef50_B5YIG7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIG7_THEYD Length = 557 Score = 238 bits (607), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 180/550 (32%), Positives = 288/550 (52%), Gaps = 49/550 (8%) Query: 32 SRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATS 87 S+G++ E L ++ + P++ ++G+ +A +I+ A + T+I++ GD+DADG TS Sbjct: 35 SKGLKDIDEIYSFLNPNIDNIDPFE-ITGIYEATKIIDAAIKSETKILINGDYDADGLTS 93 Query: 88 TALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVE 147 TA+ + G + + Y +P+R + GYGLS +++A GA+LI+TVD GI VE Sbjct: 94 TAILYDILIKKG-AKVFYHIPHRIQHGYGLSIRSIEEAKKIGAKLIITVDCGIRDFEAVE 152 Query: 148 HARSLGIPVIVTDHHLP-----GDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLAL 202 +A GI VI+TDHH P P A A+INP + D LAGVGVAF L +AL Sbjct: 153 YANKEGIGVIITDHHEPLRLNEEVVTPHALAVINPKI-DGKPYYNYLAGVGVAFMLAMAL 211 Query: 203 RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRP 262 R++ LDLV LGT AD+VPL NR L G I + R Sbjct: 212 S---REEAL------------GYLDLVTLGTYADMVPLIHANRTLIKHGWEMIDS-PVRN 255 Query: 263 GIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 322 IK L +A ++ + L F L PR+NA GR+D V L+ ++ E L+ L Sbjct: 256 SIKMLKNIAGINSNSIRGFHLSFCLIPRINAPGRIDQAGDVVRFLISEDESELDSLSKWL 315 Query: 323 DALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFH 382 + +N R++ E+ + E + EKL + D P + + +WH GVVG +AS++ ++F+ Sbjct: 316 NQINSMRQKTEEKIMAE---VEEKLSKEFDDEP--VIVLWGDWHPGVVGTVASKLMDKFN 370 Query: 383 RPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKF 442 RP + G+ KGS RS G+ +++ L L +++FGGH AAG++L +D Sbjct: 371 RPAFILSIQGEKA-KGSARSPAGIDLQEFLNASKDL----LIRFGGHKQAAGMTLLKDNL 425 Query: 443 KLFQQRFGELVTEWL--DPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF 500 F+++ + E + D ++L + D ++ E+T +VA+ + P+G+ EPLF Sbjct: 426 YAFKEKLCLIAQEIVRDDKNIL----LLDAAVNLNEVTEKVAEEISLLEPFGEGNREPLF 481 Query: 501 DG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDIN 559 +L R VG HLK+ + G + I F++ A + + + A+ IN Sbjct: 482 GAKELTVLNLRKVGNNHLKMFLRQ--NGNTIGAIGFDMGDAQILEGSL--IDAAFTPSIN 537 Query: 560 EFRGNRSLQI 569 E+ G +SLQ+ Sbjct: 538 EWEGMKSLQL 547 >UniRef50_C9RIN9 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIN9_FIBSS Length = 570 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 173/590 (29%), Positives = 289/590 (48%), Gaps = 52/590 (8%) Query: 12 VDETADLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNA 67 V T ++P + R SRG+++ + L S + + G++KAVE + Sbjct: 5 VASTLSSTLKIPHAVARFLVSRGIKTVSDAYHMLCSSESDVHDPFLMMGMDKAVEWILAV 64 Query: 68 FREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHA 127 G R+ + GD+D DG TS L ++++G + ++ +PNRF DGYGLS VD+ + Sbjct: 65 RERGERVFIFGDYDLDGMTSVTLLTRCLKTVGIES-EWRLPNRFGDGYGLSVSAVDEMYE 123 Query: 128 RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP-GDTLPAAEAIINPNLRDCNFPS 186 GA+ ++TVD GI+++ + HA+ LG+ V+V DHH P GD LP ++ +++P+ N+P+ Sbjct: 124 AGARNLITVDTGITANVEIAHAKELGMAVMVMDHHQPSGDGLPVSDVLLDPHQEGDNYPN 183 Query: 187 KSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRI 246 L GVGV++ + AL F I P E LDLVALGT+AD+V + NR Sbjct: 184 PELCGVGVSYKFICAL---------FSRLGIKAP--VEYLDLVALGTLADLVQMTPENRY 232 Query: 247 LTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVAL 306 T G+ ++ + PG++ + + + D+ + L P LNA GR++ + L Sbjct: 233 FTRTGLESLKNSRW-PGVQEMYTSLMKPHSCVGGIDVMYKLAPLLNAPGRMERPDPALKL 291 Query: 307 LLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWH 366 LLC+N GEA L EL N RK+ E + A+ + L DT+P + + WH Sbjct: 292 LLCENKGEAGKLLEELKDWNARRKQKEAEITEMAMEQVKAL--YGDTIPTVIVVAGENWH 349 Query: 367 QGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKF 426 GV+GI+A+++ + FHRP + +G S R++ G + AL L+ ++ Sbjct: 350 VGVIGIVAAKLAQEFHRPSAVLSII-NGMAHASARAVPGFNWHKALFDSRELFD----RW 404 Query: 427 GGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLR 486 GGHA AAG SLE K + + G L+ D GEV++ P ++ + + +L Sbjct: 405 GGHANAAGFSLEAGKIEELR---GRLLQSAKDQG-YTGEVINTDESYPYDIKIALRELTV 460 Query: 487 DA---------------------GPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPV 524 + P+G FP P F + + + R + HL++ + Sbjct: 461 ETRVPTGRYPIRERSILEFIDLLEPFGGNFPYPAFRAENVTVHRVRELRGGHLQMEISQA 520 Query: 525 GGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 G + IAF + + R V + ++ N + +++Q+ I +I Sbjct: 521 GSA-VFPAIAFGLRKSKALLGRSRPVTVVFEPIWNYYNNTKTVQLCIKSI 569 >UniRef50_A6DSV4 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DSV4_9BACT Length = 572 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/447 (34%), Positives = 236/447 (52%), Gaps = 18/447 (4%) Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++K VE ++ + ++ +IIV GD+D DG TS+ L ++S G + + NR DGYG Sbjct: 66 MQKTVERIFESIQKNEKIIVHGDYDTDGVTSSTLLNWVIKSYGADS-SVFISNRLHDGYG 124 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 +P + GA L+++ D GI+S ++A G+ I+TDHH P D LP A AIIN Sbjct: 125 PTPTTMQNQIEAGASLVISTDCGITSFEAADYAHENGLDFIITDHHNPADQLPKAYAIIN 184 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P + SLAGVGV+F L AL F G A +L LDLVALGT+AD Sbjct: 185 PRITTELIDLYSLAGVGVSFKLCHALLKFGSKIG-----KKATIDLRNGLDLVALGTIAD 239 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 PL NR L G+ + RPG++AL E D + A+D+ + P++NAAGR Sbjct: 240 SCPLIGENRALVKNGLKLLNVNP-RPGVRALYEATTLDTH-ITAADISRKISPKINAAGR 297 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + D V LL ++I E+R L +L N+ R+ E+ +EAL + ++ +S P Sbjct: 298 VGDPMVSAKLLASNSIHESRQLVGQLKNFNRIRRNAEKSAYMEALQIAKEQAKSS---PP 354 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERL 415 L + P+WH GV+G++++++ + F P + + + L GSGRS G+++ + L+ Sbjct: 355 LLLVVGPDWHPGVIGLISTKLTKHFGLPSVVLSKDKNPDELLGSGRSCDGINLLEGLKHC 414 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELV-TEWLDP-SLLQGEVVSDGPLS 473 L + FGGH MAAGLSL + + F+++ EL+ ++ LD + DG S Sbjct: 415 SDL----LNNFGGHPMAAGLSLAVNNLEAFREKIIELLESDVLDKVEKKRKHQYYDGEFS 470 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLF 500 ++ + L P+G P+F Sbjct: 471 FQDLNEQFIGDLERMEPFGNGNDAPVF 497 >UniRef50_B2IMS8 Single-stranded-DNA-specific exonuclease RecJ n=75 Tax=Streptococcaceae RepID=B2IMS8_STRPS Length = 744 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 189/560 (33%), Positives = 295/560 (52%), Gaps = 39/560 (6%) Query: 20 AELPPLLRRLYASRGVRSAQELER----SVKGMLPWQQLSGVEKAVEILYNAFREGTRII 75 A L P + RL RG+++ + L++ S++ + L ++KAVE + A EG I+ Sbjct: 30 AGLGPEVARLLFERGIQNQESLKKFLEPSLEDLHDAYLLHDMDKAVERIRQAIEEGENIL 89 Query: 76 VVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ-AHARGAQLIV 134 V GD+DADG TS ++ ++ LG YL PNRF DGYG + V G LIV Sbjct: 90 VYGDYDADGMTSASIVKESLEQLGAECRVYL-PNRFTDGYGPNASVYKYFIEQEGISLIV 148 Query: 135 TVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGV 194 TVDNG++ H + A+S+G+ VIVTDHH +TLP A AI++P D ++P K LAG GV Sbjct: 149 TVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYAIVHPEHPDADYPFKYLAGCGV 208 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 AF L AL +E + ELLDLVA+GT+AD+V L NRIL G+ Sbjct: 209 AFKLACAL---------LEEVQV------ELLDLVAIGTIADMVSLTDENRILVQYGLEM 253 Query: 255 IRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 + + R G++ +L++A A ++ +GF + PRLNA GRLDD + + LL + E Sbjct: 254 LGHTQ-RIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEE 312 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILA 374 A +A + N+ RKEI Q + EA T+ + ++ + G W+ GV+GI+A Sbjct: 313 AHEIALMIHQKNEERKEIVQSIYEEAKTMVDPEKKVQVLAKEG-------WNPGVLGIVA 365 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 R+ E + VI DG KGS RS++ + D E LD + + + FGGHA AAG Sbjct: 366 GRLLEELGQTVIVLN-IEDGRAKGSARSVEAV---DIFEALDP-HRDLFIAFGGHAGAAG 420 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 ++LE ++ Q + V E + + ++ D L +++E + P+G Sbjct: 421 MTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLEALSLETVKSFERLAPFGMD 480 Query: 495 FPEPLFD-GHFRLLQQRLV--GERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQ 551 +P+F +F++ R + G HLK+ + G + +AF + + ++ Sbjct: 481 NQKPIFYIKNFQVESARTMGAGNAHLKLKISK--GEASFEVVAFGQGRWATEFSQTKNLE 538 Query: 552 LAYKLDINEFRGNRSLQIII 571 LA KL +N++ G +LQ+++ Sbjct: 539 LAVKLSVNQWNGQTALQLMM 558 >UniRef50_B0CAF5 Single-stranded-DNA-specific exonuclease RecJ n=11 Tax=Cyanobacteria RepID=B0CAF5_ACAM1 Length = 795 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 185/570 (32%), Positives = 304/570 (53%), Gaps = 39/570 (6%) Query: 22 LPPLLRRLYASRGVRSAQELER-----SVKGMLPWQQLSGVEKAVEILYNAFREGTRIIV 76 L PLL + A++G+ S + ++ S P + + ++ +L +A +I + Sbjct: 30 LSPLLAAVLANQGIGSVEAAQQFLAPESQSLPSPLEAFPDLAASLTLLQDAIASRHKIAI 89 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+DADG TSTAL + +R+LG +++DY +P+R ++GYG++ +V++ A L++TV Sbjct: 90 CGDYDADGMTSTALLLRVLRALG-ADVDYAIPSRMQEGYGINQRIVEEFAADNVTLVLTV 148 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 DNGI+++ + AR LG+ VI+TDHH LP A AI+NP L + P + LAGVGVA+ Sbjct: 149 DNGIAAYDPIVRARELGLTVIITDHHDLPPQLPPANAILNPKLVPEDSPYRGLAGVGVAY 208 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L L ++QG N + + LL+L LGT+AD+ PL NR +G++ + Sbjct: 209 VLATLLA---QEQG-----NTTL--ITPLLELFTLGTIADLAPLVGVNRRWLQRGLALLP 258 Query: 257 AGKCRPGIKALLEVANRDA--QKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 + G+++L++V+ + Q L +GF LGPR+NA GR+ D + LL D+ G Sbjct: 259 HSRLA-GVQSLMQVSGCVSADQALKPDAIGFRLGPRINAVGRIADPQTVIELLTTDDPGI 317 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT--LPGG---LAMYHPEWHQGV 369 A A + + NQ R+++ ++IEA+ L E L R P G + + HP WH GV Sbjct: 318 AFARAMQCEQANQHRRQLCADIEIEAIELVETLVRQGKAPWQPEGDWVIMLVHPGWHHGV 377 Query: 370 VGILASRIKERFHRPV-IAFAPAGDGT-LKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 +GI+ASR+ ER+ PV IA A D T ++GS R I + AL+ D + ++G Sbjct: 378 IGIVASRLVERYGLPVFIATYEAEDHTHIRGSARGIPEFDVFAALQACDE----ALGRYG 433 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRD 487 GH A G SL D+ + + + L L+ V D S ++ ++ + + Sbjct: 434 GHRAAGGFSLATDQLEKMRSHLRTYAHQTLQIDQLKPLVTVDAQASFTQIDWDLYEQINQ 493 Query: 488 AGPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMV---EPVGGGPLLDGIAFNVDTAL 541 P G PEP+F + +++QR VG + HLK+ + E L+ G+A+ T Sbjct: 494 LHPCGIGNPEPIFWTANVEVVEQRPVGKDKSHLKLTLAHTESDDRQQLIKGMAWRWGT-Y 552 Query: 542 WPDNGVREVQLAYKLDINEFRGNRSLQIII 571 +P + + +AY+L N + +L++ I Sbjct: 553 YPLP--QRIDVAYRLRENTWNQQTNLELEI 580 >UniRef50_Q04F00 Single-stranded DNA-specific exonuclease n=1 Tax=Oenococcus oeni PSU-1 RepID=Q04F00_OENOB Length = 622 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 167/528 (31%), Positives = 267/528 (50%), Gaps = 54/528 (10%) Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 +L +E + L +A +I + GD+DADG TST++ + ++ LG +DY +PNRF Sbjct: 61 RLDQIELLKKRLISAIDNQEKITIYGDYDADGITSTSILLKTLQILGA-RVDYFIPNRFR 119 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 DGYG + V Q G +LI VDNGIS V+ A + V++ DHH LP A+ Sbjct: 120 DGYGPNKFVYQQLIDTGTKLIFAVDNGISGFDAVDLANRNQVDVLIADHHQLPKKLPNAK 179 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 AII+P+L D ++P K+L+ G+AF + L + + LVA+G Sbjct: 180 AIIHPDLSD-DYPFKNLSAAGIAFKVSKYL--------------LGTQKARQFFPLVAIG 224 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 292 +ADV+PL NRIL G+ I++G+ + G++ +++ A+ + L A D+ F + PRLN Sbjct: 225 EIADVMPLINENRILIQTGIDLIKSGENK-GLQEVIKRADLKLESLTAQDIAFKIAPRLN 283 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 + GR+ D +GV LL D+ + +A +++ LN+ R Q EA + R Sbjct: 284 SLGRMADAGIGVELLTTDDSDKVSEIAKQVEHLNKQR-------QKEADKIYRIASRQVS 336 Query: 353 TLPGGLAMYHPE-WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 + + E WH+G++GI+A R+ F RP + F+ +G KGS RS + Sbjct: 337 PQENNIIIVSGENWHEGIIGIIAGRLSAYFGRPAVVFS-VKNGIAKGSARSTGDFDLYKV 395 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L+R LY + FGGH AAGLSL+ + + D G + D Sbjct: 396 LDRARDLY----ISFGGHKQAAGLSLKASDLDRLDK-----ILNADDYHFSVGRLAIDAV 446 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGGGP 528 + +++++ + L P+G+ PEP+FD L+ R++G ++H K+ V G Sbjct: 447 IKAEDLSIDSFKQLSKLAPFGEGNPEPIFDLDDVELVNLRILGSDKKHFKLKVNGFSG-- 504 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDI------NEFRGNRSLQII 570 D + FN PD + ++QL +L I NE++ +SLQII Sbjct: 505 --DILFFN-----RPD-LIGKLQLGERLSIVGTLSLNEWKHRQSLQII 544 >UniRef50_B2ULA8 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2ULA8_AKKM8 Length = 579 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 190/534 (35%), Positives = 268/534 (50%), Gaps = 48/534 (8%) Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTAL--SVLAMRSLGCSNIDYLVPNRFEDGYGL 117 AV+ ++ A EG + + GD+D DG TS AL ++L L + Y +P R +GYGL Sbjct: 69 AVDRIFRAVDEGETVCIYGDYDVDGVTSVALLRAILMAYDL---DPQYFIPVRSREGYGL 125 Query: 118 SPEVVDQAHARGA---QLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT-LPAAEA 173 S + + A L++TVD G SS V+ SLGI VI+ DHH G P A A Sbjct: 126 SEAGIKRCLCECADPPSLLITVDCGTSSVKEVDMLNSLGIDVIILDHHEAGPLGRPDAAA 185 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 ++N + + N P L GV F L AL ER + +L LDLVA+ T Sbjct: 186 VVNAKIEE-NSPYTYLCSAGVVFKLAHAL---------LKERKLKTFDLKLYLDLVAVAT 235 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVAN-------RDAQKLAASDLGFA 286 VAD+VPL A NRIL G+ R+ A G+K L E+A A L A+ +GF Sbjct: 236 VADIVPLVAENRILVRHGLGRL-AHSRHTGLKTLTEIAGIRPSDSVNHAGFLNAAHVGFR 294 Query: 287 LGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEAL-TLCE 345 +GPR+NAAGR+D + LLL + A LA LD+ N+ R+E E+ ++ +A+ L Sbjct: 295 IGPRINAAGRMDSPMDALELLLTMDARRAVQLAQMLDSHNRKRQEEEEAIRTDAVEMLHN 354 Query: 346 KLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRP--VIAFAPAGDGTLKGSGRSI 403 + RD + + + WH GVVGI+AS++ R+H+P VIAF +G G KGSGRSI Sbjct: 355 SFDPERDNV---IVLGSRAWHPGVVGIVASQLMRRYHKPTFVIAFDESGVG--KGSGRSI 409 Query: 404 QGLHMRDALERL-DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLL 462 G+ + A+ DTL G GGH MAAGL +EE + F++ F V+E Sbjct: 410 PGVSLVQAIHHCADTLVSG-----GGHDMAAGLVIEESRMDDFRRAFNRYVSETTTEEQR 464 Query: 463 QGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH--FRLLQQRLVGERHLKVM 520 + D +S +T+++ P+G P+PLF F + VG HLK+ Sbjct: 465 SPVLNIDMEVSFQALTLDLLDSYEKLEPFGNSNPQPLFMSSDVFPTEPPKRVGTNHLKLF 524 Query: 521 VEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + G D I FN P+ +A+ +D N +RG SL I I I Sbjct: 525 MR--QGIVERDAIFFNGAERELPNP---PWDIAFTIDRNVYRGRASLSISIQEI 573 >UniRef50_C9RBA5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Ammonifex degensii KC4 RepID=C9RBA5_AMMDK Length = 865 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 183/567 (32%), Positives = 275/567 (48%), Gaps = 55/567 (9%) Query: 24 PLLRRLYASRGVRSAQELERSVKGML----PWQQLSGVEKAVEILYNAFREGTRIIVVGD 79 P+L ++ +RGV++ +E + + G L P ++ +E+AV+ + +A +I+V GD Sbjct: 25 PVLAQILLNRGVKTLEEADFFLNGRLAQLPPPGKMKDLERAVKRIRSAVANQEKILVWGD 84 Query: 80 FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139 +DADG T+T L V ++ LG + Y +P R DGYGL + + A +G L++TVD G Sbjct: 85 YDADGITATVLLVSVLKHLGAEEVTYHLPTR-ADGYGLKGDFLRAAKEQGVSLVLTVDCG 143 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199 + + + +G+ +I+TDHH P D LP A A+INP DC +P K LAGVGVAF L Sbjct: 144 VKASEEARLCKLMGLDLIITDHHEPSDELPEAWAVINPRRPDCPYPFKELAGVGVAFKLA 203 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 AL R A E LD+VALGTVADV+PL NR+L +G+ + + Sbjct: 204 TAL-----------SREAA----EEWLDVVALGTVADVMPLVGENRVLVREGLKLFNSSR 248 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 RPG+ LL A + + L F L PRLNAAGR+ D V LL EA + Sbjct: 249 LRPGLAGLLSAAG-ASLPVTVRTLSFVLAPRLNAAGRIGDPDVAARCLLAVE-EEAEQWS 306 Query: 320 NELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKE 379 +L+ LN+ R+ E EA L +R+R+ L + +W G+ G++A R+ Sbjct: 307 RKLEELNRERQRWENACLKEADLLA---KRAREASSRVLVVEASDWPVGLTGLIAQRLHS 363 Query: 380 RFHRPVIAFAPAGDGTL-KGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLE 438 + P AF +G + +GSGR+ + ++ AL +L +GGHA A G +L Sbjct: 364 LYQLP--AFVIVWEGEVGRGSGRADESFNVYQALSHASP----YLLDYGGHAGAGGFTLT 417 Query: 439 EDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEP 498 + F F E D L ++T + + L P+G P P Sbjct: 418 RESFPHFVASLEEYARNLPPDRTYHACRYFDAVLELEKLTPRLMEELGRLEPFGPGNPPP 477 Query: 499 LFDGHFRLLQQRLVG---------ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVRE 549 RL+ Q + E HL++ + G L+G+AF P R Sbjct: 478 ------RLVAQGVEVVEVRRVGKEEEHLRLRLR--QGRACLEGVAFGRGGEELP----RL 525 Query: 550 VQLAYKLDINEFRGNRSLQIIIDNIWP 576 V L ++ INE G L+I+ + WP Sbjct: 526 VDLVFEPSINELTGQPELKIL--DWWP 550 >UniRef50_A4E7W6 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7W6_9ACTN Length = 1095 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 177/491 (36%), Positives = 267/491 (54%), Gaps = 41/491 (8%) Query: 22 LPPLLRRLYASRGVRSAQE--------LERSVKGMLPWQQLSGVEKAVEILYNAFREGTR 73 +P L+ R+ + G+ S +E L+R L +S V VE A R Sbjct: 29 IPGLVARIMVAHGIGSIKEGQLFLTPSLDRDWADPLIIPGMSVVADRVE---RAIRNHEH 85 Query: 74 IIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH--ARGAQ 131 I V GDFD DG TST L A+R+ G +++ +P RF++GYGLS +D+ + AR Q Sbjct: 86 IAVFGDFDVDGITSTCLLTEALRTFG-ADVTPFIPRRFDEGYGLSRAALDRVNELAR-PQ 143 Query: 132 LIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAG 191 LIVTVDNGI++ V + +SLGI ++VTDHH P D +P + +P L D + PS+ LAG Sbjct: 144 LIVTVDNGIAAKEEVSYLKSLGIDLVVTDHHEPSDQVPQGVPLTDPKLDD-DGPSRELAG 202 Query: 192 VGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQG 251 GVA L+ L L ++ L+++ ALGTV+D++PL NR L +G Sbjct: 203 AGVALKLVQVLGERLGKPSYW----------RSLIEVAALGTVSDMMPLTPENRALVAEG 252 Query: 252 MSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 + ++R RPG AL +A D + A L F+L PRLNAAGR+ D + + LLL + Sbjct: 253 IQQMRV-TARPGYIALAALAKADLSSITADGLSFSLIPRLNAAGRMADPKLALDLLLARD 311 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY--HPEWHQGV 369 EA LA EL+ +N+ R+EIE + +A+ E +T GG A+ WH+GV Sbjct: 312 PIEASALAAELEEINRQRREIEAELTRDAMAKVE------ETYDGGRAIVVGGEGWHEGV 365 Query: 370 VGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGH 429 GI+ASR+ R+H P + F+ DG +GSGRS+ +++ DA+ER L M++ GGH Sbjct: 366 KGIVASRLTNRYHVPALLFS-IEDGIARGSGRSVGKVNLFDAIERCSDL----MIRRGGH 420 Query: 430 AMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAG 489 A A G+++E K F++R +++E + V+ + +E+ +E + + Sbjct: 421 AGAVGVTIEASKLDEFRRRLSVVLSELPAEDFEDTDEVA-ATVDLSELNIETIEQISRLE 479 Query: 490 PWGQMFPEPLF 500 P+GQ PL Sbjct: 480 PFGQGNKVPLL 490 >UniRef50_D0EM60 Single-stranded-DNA-specific exonuclease n=3 Tax=Deinococcus RepID=D0EM60_DEIRA Length = 705 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 175/523 (33%), Positives = 271/523 (51%), Gaps = 46/523 (8%) Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 + +A + A REG RI + GD+DADG ++TA VL +R++G +N+ +P+R +GY Sbjct: 56 ALREAARHIVAAVREGKRIRIHGDYDADGVSATATLVLGLRAIG-ANVHGFIPHRLNEGY 114 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G+ P+ V + HA A L+VTVD G+S+ V+ + G V+VTDHH PG+ P ++ Sbjct: 115 GIHPDRVPE-HAAAADLVVTVDCGVSNLDEVKSLLATGTEVVVTDHHAPGENFPEC-LVV 172 Query: 176 NPNLRDCNFPSK-SLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +P+L P + +L G GVA++L+ W + P LL L LGTV Sbjct: 173 HPHLTPDYDPDRHNLTGAGVAYHLL-----------WAVYEELGRPEPRALLPLATLGTV 221 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 ADV PL NR L G++ + A PG++AL+ + ++ A D+ F L PR+NAA Sbjct: 222 ADVAPLLGENRALVRAGLAEM-ARTELPGLRALMN--EKRVRQPTARDVAFILAPRINAA 278 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ + + LL + EA+ LA L+ NQ R++I+ M +AL L + + + Sbjct: 279 GRMGEADRALELLTTPSDHEAKSLAAYLEIRNQERRKIQDDMFAQALQLADPNDPA---- 334 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 L + H +WH GV+GI+AS++ E F+RPV A KGS RS G+ L Sbjct: 335 ---LVLTHDDWHAGVMGIVASKLVETFNRPVYIVAQG-----KGSVRSTPGISAVQGLRE 386 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 L + +FGGH AAG SL+ F ++R V ++ P V D PL Sbjct: 387 SRDL----LGRFGGHPGAAGFSLDPQNFGALRERIHGYVRQFPTPV---PAVRLDAPLPV 439 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 A +T E+ L P+G+ P PL+ L RLVG++ V+ GG + G+ Sbjct: 440 AALTPELLSELSILEPFGEGNPRPLWHLRGPLTDTRLVGKQG-DVLQFRFGG---VKGMK 495 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 ++ D+ E +A +L +NE++G SL++ + P+ Sbjct: 496 YSER-----DDAAGERDVAAELALNEWKGRTSLELHAAALRPL 533 >UniRef50_A5FY25 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Alphaproteobacteria RepID=A5FY25_ACICJ Length = 594 Score = 234 bits (598), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 196/586 (33%), Positives = 299/586 (51%), Gaps = 32/586 (5%) Query: 7 LRRREVDETADLPAE---LPPLLRRLYASRGV---RSAQELERSVKGMLP-WQQLSGVEK 59 L R D TA A+ +P ++ RL A RGV +A LE +++ LP L+ ++ Sbjct: 24 LWRPAADRTAQAIAQRCGVPEVIGRLLAGRGVMPDHAADFLEPTLRAYLPDPSALTDMDA 83 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 A + ++ + G I + GD+D DGA S AL L + LG + I+Y VP+R +GYG + Sbjct: 84 AAARIADSVQRGATIAIFGDYDVDGACSGALMALGLGELGATTINY-VPDRLREGYGPNA 142 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 + +GA+LIV VD G ++H + A IV DHH PA A +NPN Sbjct: 143 PALRALAGQGAELIVCVDCGTAAHEALA-ALDGRADAIVLDHHKSEGAPPAIVATVNPNR 201 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 D ++ ++F ++A++ LR +G+F R +L +LDLVAL TV DV+P Sbjct: 202 ADDASGLGNVCAATISFLTLVAVQRELRRRGFFATRREI--DLLSMLDLVALATVCDVMP 259 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVAN-RDAQKLAASDLGFALGPRLNAAGRLD 298 L NR L QG+ ++ A + RPGI ALL+VA R+A GFA+GPR+NAAGR+ Sbjct: 260 LTGLNRALVTQGL-KVMARRERPGIAALLDVAQVREAP--GTMTCGFAIGPRINAAGRIA 316 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 + +G+ LL A VLA LD +N+ R+ +E G+ EA+T E + P L Sbjct: 317 EADLGLRTLLAAEPATAMVLARRLDEINRERQAVEAGLLDEAMTDAEA--QFAAGAPVAL 374 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + +WH GVVGI+A RIKE F+RP + A +G GSGRS+ G+ + A+ + Sbjct: 375 -VAGEQWHPGVVGIVAGRIKETFNRPAL-VAGIAEGRAVGSGRSVPGVDLGSAI--IAAR 430 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGE-LVTEWLDPSLLQGEVVSDGPLSPAEM 477 G+++K GGHAMAAG ++E + + + E L P ++ +G + + Sbjct: 431 EAGLLIKGGGHAMAAGFTVEAGRIEALRGFLAERLAVAATLPD--AADLPIEGMAAVGGI 488 Query: 478 TMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIA 534 +A + GP+G EP+F R+L+ +G E ++ VE GG L I Sbjct: 489 DEALAAAIGRVGPFGAGNEEPVFVVPRARVLRADRIGRNEATIRAFVEGEAGG-RLKTIL 547 Query: 535 FNVD----TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 F A G + LA + ++ G S+ +I+ + P Sbjct: 548 FRAGDGDLAAALARPGGAPLNLAGHIRAEQWNGRTSVSLILIDAAP 593 >UniRef50_B0S1I9 Single-strand DNA-specific exonuclease n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S1I9_FINM2 Length = 580 Score = 234 bits (597), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 154/527 (29%), Positives = 264/527 (50%), Gaps = 38/527 (7%) Query: 22 LPPLLRRLYASRGVRSAQEL-----ERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIV 76 + PL+ ++ +R + ++ E S P+ + ++KAV+I+ + +I + Sbjct: 22 IHPLIAKILLNRNITDFEKFLNPNAENSYHN--PFL-MKDMDKAVDIIISTIDHNEKIRI 78 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 VGD+D DG +ST +++L I Y +PNR DGYG+S ++D+ LI+T Sbjct: 79 VGDYDQDGNSST-MTLLDGLGYFTDKISYDIPNRMTDGYGISFSIIDKCIEDNIDLIITC 137 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLP-----GDTLPAAEAIINPNLRDCNFPSKSLAG 191 DNGIS+ ++AR GI +IVTDHH + +P A+A++NP + C +P KSL G Sbjct: 138 DNGISAIEQCDYARKNGIKIIVTDHHQTIKHDGKEIIPNADAVVNPQQQSCKYPFKSLCG 197 Query: 192 VGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQG 251 GVA+ L+ A+ ++ + LL VA+GTV D+V L NR +G Sbjct: 198 AGVAYKLIQAINI---------KKGYGMLQCENLLQYVAMGTVCDIVDLKDENRYFVTKG 248 Query: 252 MSRIRAGKCRPGIKALLEVAN-RDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCD 310 + I G+K L+ + ++A + + LGF +GP +NAAGRLD +GV L + Sbjct: 249 LEEINNTD-NYGLKCLINMTGIKNAVNVYS--LGFIIGPCINAAGRLDTAKLGVELFRDE 305 Query: 311 NIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVV 370 N+ A L LN+ RK++ + +A+ + E D + L H+ V Sbjct: 306 NMDNVEAYAKILVDLNEKRKKLTEDGFNKAVEIIENTALKNDDI---LICNVEGIHESVC 362 Query: 371 GILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGH 429 GI+A RIKE++++P + A LKGSGRSI ++ E D + M + FGGH Sbjct: 363 GIIAGRIKEKYNKPTLILTESANKNLLKGSGRSISEYNI---FEEFDE-FREMFVSFGGH 418 Query: 430 AMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAG 489 MA GLS+E++K F+ + + L +++ D ++ ++ + + + Sbjct: 419 PMACGLSIEKNKLDEFRTKVNK--NSKLTEEDFVKKILIDSSFYIDKIDFDLIEEIGNLR 476 Query: 490 PWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 P+G+ P P+ D ++ +++G+ + ++ + +D I F Sbjct: 477 PFGKDNPRPILGDKDVEIIFAKMIGKNQNVLKMKLLKNNKAIDAILF 523 >UniRef50_C7H0U6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0U6_9FIRM Length = 542 Score = 234 bits (596), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 161/546 (29%), Positives = 278/546 (50%), Gaps = 59/546 (10%) Query: 50 PWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPN 109 P +L +++AV + A +I + GD+DADG TST + + +++ G ++++Y +P+ Sbjct: 34 PADELYSIDEAVSRIAKACENNEKITIYGDYDADGVTSTGIMFMFLKAAG-ADVEYYIPS 92 Query: 110 RFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLP 169 R ++GYG+S E +++ G LI++VD G +S+ E+A S+G+ V++TDHH D Sbjct: 93 RMDEGYGISIEAINKIKETGTTLIISVDCGSNSYEEAEYAESIGMDVVITDHHTV-DKHH 151 Query: 170 AAEAIINPN--LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLD 227 +NP C FP +AGVGVAF ++ L+ L D+R L E LD Sbjct: 152 YEGINVNPKHPKSSCAFP--QIAGVGVAFKVLQQLQRKLN----LDKR-----VLLETLD 200 Query: 228 LVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFAL 287 LVA+GT+AD++P+ NR G+ ++ G++ LL +++ + D+ F + Sbjct: 201 LVAIGTIADIMPVYDENRTYIKYGLLKMNKNP-NLGLRCLLRELGIADREIKSDDVSFRI 259 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 P +NAAGRL++ S+GV L + D+ A LA +L LN RKE++ ++ Sbjct: 260 APCINAAGRLENASIGVELFITDDEKRAMTLARDLVNLNTKRKELQVA----------EV 309 Query: 348 ERSRDTL-----PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRS 402 +RS++ + + + H GV GI++ ++KE F + I GDG LK SGRS Sbjct: 310 KRSKEKMVETGADKNAILLTLDIHSGVAGIVSGKLKEDFGKVAIVMVDTGDGYLKASGRS 369 Query: 403 IQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWL--DPS 460 + + L + LY + FGGH+ A G ++++ +F++RF V + + DP Sbjct: 370 PDAIDLYQLLLKFQDLY----VNFGGHSAACGFTIKKSDENVFRERFYRAVDDMVEADPG 425 Query: 461 LLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLV-------- 512 L+ D + ++M +E+A L+ P+G++ + R L + +V Sbjct: 426 SLKKNYKYDLKVDVSDMNLELASELKMLEPYGKL------NEDIRFLIEDVVPFNMIYLG 479 Query: 513 -GERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVRE---VQLAYKLDINEFRGNRSLQ 568 RH+K ++ L+ + FN + N + E + + K NE+RG S Q Sbjct: 480 RDSRHIKFFLKQARN--TLECMCFNAAAEVI--NMIEEQKHISIIGKFGANEYRGKLSPQ 535 Query: 569 IIIDNI 574 I + +I Sbjct: 536 ITVSDI 541 >UniRef50_D0LJ88 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJ88_HALO1 Length = 577 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 201/597 (33%), Positives = 300/597 (50%), Gaps = 62/597 (10%) Query: 10 REVDET--ADLPAEL--PPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAV 61 R VD T + L A L + R A RG+ A L + + P L+G+ AV Sbjct: 8 RTVDATTVSSLAAGLGVSEITARCLAGRGIADASSARSYLAPRLNQLRPPVGLTGLSTAV 67 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 E L A +G RI + GD+D DG T+ AL + LG S + + R + GYG Sbjct: 68 ERLARAVSQGERIGIFGDYDVDGVTTAALMASFLEQLGASCVPRVA--RRDAGYGFGSAE 125 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE------AII 175 D + G ++I+T D G S +E A + G+ VIV DHH T+P+A A++ Sbjct: 126 ADAMASAGCRVIITGDCGTSDIDAIERAAARGVDVIVVDHH----TVPSATEQHPALALV 181 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP D FP +++A VG+AFYLM ALRT L +G+F +P+L ELLDLVALGTVA Sbjct: 182 NPLRADSTFPFRAMASVGLAFYLMAALRTELSGRGYF-RSGREMPDLRELLDLVALGTVA 240 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQK-LAASDLGFALGPRLNAA 294 D+VPL NRIL G+ + G+ RPG+ AL+ +A + + +G+ LGPRLNA Sbjct: 241 DLVPLQGENRILAATGLQYLAQGR-RPGVAALMALAKVGGDRGIDERAIGWRLGPRLNAP 299 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ D + ++LLL + EA A +++ N+ R+ + + + L + + Sbjct: 300 GRMGDAAPALSLLLARDAAEAEHWAAQVEDANERRRAAQAEVWEQVLGMLPSAD------ 353 Query: 355 PG-GLAMYHPEWHQGVVGILASRIKERFHRP--VIAFAPAGDGTLKGSGRSIQGLHMRDA 411 PG + + W G+ GI+AS++ E F RP VIA P G +GSGR+ +G H+ + Sbjct: 354 PGPAVVVAGDGWPSGITGIVASKLNEMFERPSFVIAVDPV-SGLARGSGRAPKGFHLCEI 412 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L R D+ +++FGGHA AAGL+ E + + ++ V E + G+ G Sbjct: 413 LARCDS----HLVRFGGHAGAAGLTAEAGRVEALREALSAAVAE----ASADGDEGGAGR 464 Query: 472 LSPAEMTMEVAQ----LLRDAG---PWGQMFPEPLFDGH-FRLLQQRLVG--ERHLKVMV 521 S + +++ Q L R+ G P+GQ +PL R+ R VG HLK+ Sbjct: 465 GSLIDAEVDLGQVDESLCRELGQLSPFGQGNEKPLLGCRGMRVRTTRRVGGDGSHLKLEF 524 Query: 522 EPVGGGPLLDGIAFNVDTALW----PDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 E G L GIAF W P G + + IN +RG +++ I ++ Sbjct: 525 EDR-QGRALSGIAFG-----WGERDPGAGA-TIDATFVPSINVWRGESRVELEIQHL 574 >UniRef50_UPI000197A786 single-stranded DNA-specific exonuclease n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI000197A786 Length = 530 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 152/464 (32%), Positives = 246/464 (53%), Gaps = 41/464 (8%) Query: 43 RSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN 102 R+++ + Q L+ E +I+ A I+VVGD+DADG ++A+ L ++L + Sbjct: 28 RTLRDLPTPQNLNNTESGAKIITQAMERNNEILVVGDYDADGVCASAIISLFFKALEYQH 87 Query: 103 IDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH 162 ++P+RFEDGYG+S ++++ +A+ A ++V+VDNGI++ + ++ GIP I+TDHH Sbjct: 88 FRLIIPHRFEDGYGVSAALLEK-NAQNAAVVVSVDNGITAFCAGQWCKAKGIPFIITDHH 146 Query: 163 LPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLR---DQGWFDERNIAI 219 P DTLP A+ IINP L+D F KS+ G VA+Y A++ L+ D G F Sbjct: 147 TPTDTLPQADVIINPMLQDSTFTQKSICGAVVAWYFCAAIKQNLKANIDMGMF------- 199 Query: 220 PNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALL--EVANRDAQK 277 L+ +A+ T+ADV+PL NRIL +G+ +R + A L E R + Sbjct: 200 ------LEYLAIATIADVMPLTGINRILVKKGLESLRTSS---NVLATLLRESFARFKKP 250 Query: 278 LAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQ 337 + A +L F P LN AGR++ + + LLL ++ A + EL LN RKEI+Q + Sbjct: 251 ITAENLAFDFIPLLNCAGRMESANKALELLLSPSLAHATHIYTELQNLNNKRKEIQQDIL 310 Query: 338 IEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLK 397 +A E + ++ D + Y WH+GV+GI+A+++ + + + D LK Sbjct: 311 QKAQ---EHIIQTDDFVLS----YGDSWHEGVLGIVAAKLARIYKKSAFVLSQNAD-VLK 362 Query: 398 GSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGE-LVTEW 456 GSGRS G ++ ++ L G+ GGH+ A GLSLE + ++ E +V E Sbjct: 363 GSGRSYGGANLIASITPLQQYCLGL----GGHSGAVGLSLESCQLWTLIEKLQETMVYEE 418 Query: 457 LDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF 500 D E + L + ME+ ++L P+G+ P+P F Sbjct: 419 CD------ENETFFTLGVKSVDMELFEILESFEPFGEGNPKPTF 456 >UniRef50_A9BF16 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BF16_PETMO Length = 1035 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 149/485 (30%), Positives = 262/485 (54%), Gaps = 27/485 (5%) Query: 22 LPPLLRRLYASRGVRSAQELER-----SVKGMLPWQQLSGVEKAVEILYNAFREGTRIIV 76 + L +L SR + + +E ++ ++ P+ + + KAVEIL + ++ + Sbjct: 32 ISDFLAKLLVSRNIETPEEGDKFLNHLELESFDPYL-MKDMSKAVEILKQIKEKKEKVAI 90 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+D DG T+T++ L ++ +G Y +P+R E+GY L+ + +++ ++ I+TV Sbjct: 91 FGDYDVDGVTATSVLYLGLKKIGYDVTSY-IPSRIEEGYSLNVKAIEELKSKNYNNIITV 149 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D G +S +E+A+SLG+ VIVTDHHLP + LP A+AI+NP D +P K LAGVGV F Sbjct: 150 DCGTTSIQEIEYAKSLGMKVIVTDHHLPQENLPKADAILNPKREDDKYPFKDLAGVGVTF 209 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L+ AL + N P E +DLVA+GT+AD+V + + NR L G+++++ Sbjct: 210 KLLQAL--------YKSYDNSLDP--FEYIDLVAVGTIADIVSITSENRYLVKIGLNKLK 259 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 + G+K LL+ ++ + + F + P++NAAGR+ D LL+ + + + Sbjct: 260 TNPTK-GLKYLLDELKIVDSEINSRTITFKVAPKINAAGRMSDARSAFNLLIEKDEEKLK 318 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKL-ERSRDTLPGGLAMYHPEWHQGVVGILAS 375 +EL LN R+ E+ + + +L+L + E +D + L + +WH GV+GI+AS Sbjct: 319 KAVSELLRLNSKRQSTEKEIYLYSLSLLDLYPEYKKDPV---LVLSGEDWHMGVLGIVAS 375 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 ++ +F++PV+ + + KGSGRS QG+ + + L +++ G+ +FGGH AAG Sbjct: 376 KLSNQFNKPVLMISKNQEMG-KGSGRSPQGIDLMELLLKVNE--RGIFEEFGGHKFAAGF 432 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 S+ + ++ E+ E L ++ D + TM + + P+G Sbjct: 433 SILSKNIEALRKEINEVYKELYGDKKLTSQIDVDMEIEGIWETM--FEDINKLEPFGYGN 490 Query: 496 PEPLF 500 EP+F Sbjct: 491 QEPVF 495 >UniRef50_A9BAH9 Single-stranded DNA-specific exonuclease n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BAH9_PROM4 Length = 625 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 147/489 (30%), Positives = 259/489 (52%), Gaps = 23/489 (4%) Query: 15 TADLPAELPPLLRRLYASRGVRSAQELERSVKGML---PWQQLSGVEKAVEILYNAFREG 71 + +P E+P +++ + RG+ ++ V+ P ++ A E + +A Sbjct: 17 SESIPKEIPHIIKSILLRRGLTHINDINDLVEPPDLPDPTDHFPDLDIASERIISAINNN 76 Query: 72 TRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQ 131 +I + GD+DADG TST+L V + L S I + +P+R E+GYGL+ +V++ G + Sbjct: 77 EKIAICGDYDADGMTSTSLLVDFLLRLDGSPIPF-IPSRKEEGYGLNRNIVEKIRREGIR 135 Query: 132 LIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAG 191 LI+TVDNG+S+ +E A+S GI VI++DHH + LP A+I+P+ + P K LAG Sbjct: 136 LIITVDNGVSAIYEIELAQSYGIDVILSDHHEIKENLPNLLALIHPSTIPYSSPYKYLAG 195 Query: 192 VGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQG 251 VG+A+ + + +RN + L+ DL +GTVAD+ L NR Sbjct: 196 VGLAYLIAQTIAI---------KRN-STDKLSLSKDLFCIGTVADMAKLKGANRYWLKSW 245 Query: 252 MSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 + K + G+K+LL A + + + D+ F + PR+N+ GR+ + S+ + L L + Sbjct: 246 TPNLINTKSK-GLKSLLSKAKLNNKNITTEDIAFRIAPRINSVGRISEPSLILKLFLEKD 304 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVG 371 R + N+++ +N+ RK + EA+++ LE + + L + + WHQGV+G Sbjct: 305 HISIREIVNKIENINKERKLLCNQTTSEAISI---LESNSEVLNPFIVLAQNHWHQGVIG 361 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 I+A++I ER++RP A +G L+ S RS + + AL++ + + KFGGH+ Sbjct: 362 IVAAKIMERYNRPTAILASDKNGFLRASVRSPKSFNALAALKKCSQI----LHKFGGHSA 417 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 A G +++ +K L Q + E + WL + + + + + ++T ++ L+ P+ Sbjct: 418 AGGFTIKAEKISLLQSKLNESASHWLSNN-SKPTIEPECYVEFDQITNQICNYLKLLEPF 476 Query: 492 GQMFPEPLF 500 GQ P PLF Sbjct: 477 GQGNPAPLF 485 >UniRef50_B2V9Q3 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Aquificales RepID=B2V9Q3_SULSY Length = 574 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 166/476 (34%), Positives = 246/476 (51%), Gaps = 54/476 (11%) Query: 45 VKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNID 104 +K ++ +E+A L + T I+V GD+DADG TST+L + + LG N Sbjct: 55 LKNLVNPSYFHSLEEAAIKLAEHIKRKTPIVVYGDYDADGITSTSLLINFFKDLGV-NAK 113 Query: 105 YLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP 164 Y +P+RF +GYGL+ E + + G LIV D+G ++ + +A+SLG+ V V DHH P Sbjct: 114 YYIPSRFSEGYGLNKEAIKKLSEHGKVLIVC-DSGTNAFDELFYAKSLGLEVFVLDHHEP 172 Query: 165 GDT--------LPAAEAIINPNL---RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFD 213 L IINP N K LA VG+AFYL+ R L Sbjct: 173 SYLWQNYTPPFLSEKINIINPKFYSDEQINPLFKHLATVGIAFYLIAITRRLL------- 225 Query: 214 ERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR 273 NI I L + LD+VA+GTVADVVP+ NR++ G+ + K R GIK LL VA R Sbjct: 226 --NIDI-KLRDYLDIVAIGTVADVVPMSFINRVMVKIGLEELNKQK-RAGIKELLNVA-R 280 Query: 274 DAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIE 333 ++L + D+GF +GPR+NA+GRL D V LL+ + A VLA EL+ LN+ R+++ Sbjct: 281 VKKELTSQDIGFIIGPRINASGRLADARNSVKLLVTRDQSRANVLAIELENLNKKRQKLT 340 Query: 334 QGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD 393 + EA EK E + L + + WH GVVGI A R+ E++ P + + + Sbjct: 341 DNVISEA----EK-ELLKQDLKNVIVIGKEGWHSGVVGIAAGRLTEKYKLPSVILS-VNN 394 Query: 394 GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELV 453 G GS RS+ +++ AL++ L+ KFGGH+MAAG+SL+ + ++R + V Sbjct: 395 GKAVGSARSVSKVNIYKALDKCRDLFD----KFGGHSMAAGMSLKTNLIPELKERLNQAV 450 Query: 454 TEWLDPSLLQGEVVSDGPLSPAEMTMEV---------AQLLRDAGPWGQMFPEPLF 500 EV + P + E+ MEV + + + P+G+ P P F Sbjct: 451 E----------EVAEEKPWAVKEIDMEVELSYWTTEKVKEIYNLQPFGEKNPIPKF 496 >UniRef50_C3WKI0 Single-stranded-DNA-specific exonuclease recJ n=4 Tax=Fusobacterium RepID=C3WKI0_9FUSO Length = 852 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 159/527 (30%), Positives = 270/527 (51%), Gaps = 50/527 (9%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L ++ AV+ ++ A +I + GD+D DG TS +L LA+ LG NIDY +P R ++ Sbjct: 53 LKDIDIAVKRIFEAIENNEKIYIYGDYDVDGITSVSLLYLALSELG-GNIDYYIPLR-DE 110 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH-LPGDTLPAAE 172 GYGL+ + + A L+++VD GI+S + A LG+ I+TDHH + GD LP A Sbjct: 111 GYGLNKDAIQSLKEEEANLVISVDCGINSIEEINFANELGLDFIITDHHEIIGD-LPKAF 169 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A+INP + + K LAGVG AF L+ AL + L D N +L + LD+VA+G Sbjct: 170 AVINPKREENIYSYKYLAGVGTAFMLVYALYSKL------DRLN----DLEKFLDIVAIG 219 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVA---NRDAQKLAASDLGFALGP 289 TVAD+VPL ++NR +G+ + K GIK LL + D ++ + D+G+ + P Sbjct: 220 TVADIVPLTSDNRKFVKRGLKLLNNTKW-IGIKQLLRKVFPEDWDTREYCSYDVGYLIAP 278 Query: 290 RLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLER 349 NAAGRL+D V+L + ++ E + +L N RK I++ + ++ EK + Sbjct: 279 IFNAAGRLEDAKQAVSLFIEEDGFECLTIIEQLLENNNERKNIQKKILEASIAEIEKKQL 338 Query: 350 SRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRP-VIAFAPAGDGTLKGSGRSIQGLHM 408 L + + + +H GV+GI+AS+I +++++P +I +G S RSI G+++ Sbjct: 339 YNKNL---ILVANKSFHHGVIGIVASKILDKYYKPSIIMEIKESEGVATASCRSIDGINI 395 Query: 409 RDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS 468 + L + +++K+GGH+ AAG +++ + + F QR + + E L + Sbjct: 396 VECLNSV----SDILVKYGGHSGAAGFTIKIENIEEFYQRVDKYIGENFPKELFVKTIKI 451 Query: 469 DGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF---DGHFRLLQQRLVGERHLKVMVEP-- 523 + L+P ++ E + L P+G P+F + + L+ HL + ++ Sbjct: 452 ENILAPYKVNYEFLRELEILEPYGAKNHTPIFAFKNCEYENLRFTKNSTEHLMLDIKKDN 511 Query: 524 --------VGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFR 562 GGG D IA +++ +A+KL + F+ Sbjct: 512 YYFKNCIFFGGGDYYDIIA-----------NSKKIDVAFKLKLETFK 547 >UniRef50_A8F454 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermotoga lettingae TMO RepID=A8F454_THELT Length = 979 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 167/545 (30%), Positives = 279/545 (51%), Gaps = 45/545 (8%) Query: 25 LLRRLYASRGVRSAQELERSVK-GMLPWQQ---LSGVEKAVEILYNAFREGTRIIVVGDF 80 L ++ +RG+ + R +K +L L +++ VE+L A E +++ GD+ Sbjct: 25 FLAKILVNRGIEDPKIANRFLKPSILDLHDPFLLRDMDRVVELLLKAREENIPVLIYGDY 84 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQ-LIVTVDNG 139 DADG T A+ + G DY +P R ++GYG+ P V++Q + + +++TVD G Sbjct: 85 DADGITGIAVYKEFLDRYGWVT-DYYIPKRMDEGYGIQPAVIEQFFKKFNKGIVLTVDCG 143 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199 I++ VE A+ V++TDHH G+ LP A A+++P D ++P K LAGVGVAF ++ Sbjct: 144 ITAIEAVEFAKKFNCLVLITDHHEVGEQLPDAAAVVDPKRPDDDYPFKDLAGVGVAFKVV 203 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI-RAG 258 A+ L NI I + +LL+ VA+GT+AD+V L NR + G+ ++ R G Sbjct: 204 SAISQKL---------NIQIEEIFDLLEFVAIGTIADMVKLVDENRFMVKTGLEKLKRTG 254 Query: 259 KCRPGIKALLE---VANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 K PG+ L + + D++ D+G+ + P+LNAAGRLD LL+ + A Sbjct: 255 K--PGLSILFKRLGINEPDSR-----DIGYRVAPKLNAAGRLDSADDAFELLISRDETSA 307 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 L N L N TR+EIE + + A+ E+ +D + + + WH GV+GI+A+ Sbjct: 308 EKLVNLLFEYNSTRQEIESEIFMRAVEQIEERGLHKDPI---IVVKGDNWHVGVIGIVAT 364 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 R+ R+ +PV+ + + DG +GS RSI L++ + L+ L + + +FGGH +A G Sbjct: 365 RLVHRYGKPVMVISNS-DGIARGSARSIPNLNLIELLQPLSSYF----YEFGGHPLAVGF 419 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS-DGPLSPAEMTMEVAQLLRDAGPWGQM 494 SL+ + F EL+ + P +V+ D L ++ E + + P+G Sbjct: 420 SLDSNNV----DDFAELLRNFEIPIEDVPDVLEIDEDLQLEQINEETLKDIGKLEPFGHG 475 Query: 495 FPEPLFDGHFRLLQQ-RLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLA 553 EP+F + + + G+ H V + G ++ I F +D A D + E Sbjct: 476 NNEPIFVARNVIAESIKFFGQNHANVKMNFTVNGAKIEAIGFGLDHAF--DKSIYECN-- 531 Query: 554 YKLDI 558 K+DI Sbjct: 532 -KVDI 535 >UniRef50_C0EBF3 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBF3_9CLOT Length = 678 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 175/579 (30%), Positives = 295/579 (50%), Gaps = 41/579 (7%) Query: 8 RRREVDETADLPAELPPLLRRLYASRGVRSAQ--ELERSVKGMLPWQQLSGVEKAVEILY 65 R +E++ET + L +L A+RG++ Q +L + P+ L ++KAVE + Sbjct: 15 RIQEIEETFGVSRFLAGIL----ATRGLQDDQINDLLGETELESPFA-LKDMDKAVERIN 69 Query: 66 NAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA 125 A G +I V GD+D DG TSTA+ + S+G + + + +P R + GYGL+ +D Sbjct: 70 RAVEAGEKIAVYGDYDCDGITSTAVLCTYLSSIG-AEVTHYIPERDDGGYGLNRPALDHL 128 Query: 126 HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFP 185 G QL++TVDNGI++ ++A LG+ +I+TDHH GDTLP A A+I+P DC Sbjct: 129 KGEGVQLLITVDNGITAVEEADYAAQLGMELIITDHHRVGDTLPQAVAVIDPQREDCPSR 188 Query: 186 SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNR 245 K LAGVGVAF L+ A+ + G ++ + DLVA+GTV DVVPL NR Sbjct: 189 YKFLAGVGVAFKLVAAM-----EDGDYES------TFSYFGDLVAIGTVGDVVPLTGENR 237 Query: 246 ILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVA 305 + +G+ +I + G+ A+ + A + + + F + PR+NAAGR + Sbjct: 238 TIVKRGLKQIEFSE-NIGLGAIFDKAKIAKTNVTSQYIAFGIVPRINAAGRFGMANKVFD 296 Query: 306 LLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEW 365 LL+C++ + + +A EL+ LN R+EIEQ +Q + R L W Sbjct: 297 LLMCEDEKQCKKMATELNQLNMQRQEIEQEIQQQIREELTA--NPRKLYNRVLVFAREGW 354 Query: 366 HQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLK 425 G++GI+++R+ E + RP + A G +GS RS+ G + +AL+ +L K Sbjct: 355 PHGIIGIVSARVTETYGRPSVLLAIEEGGVARGSARSVDGFSIYEALDANRSLCE----K 410 Query: 426 FGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLL 485 GGH+ AAGL+++ + +Q + E + + + D ++ +++T++ L Sbjct: 411 MGGHSAAAGLTIKAENIPALEQGLNDYAREHCE-RMPEPTYQIDFTVNASDLTVQNVNSL 469 Query: 486 RDAGPWGQMFPEPLFDGHFRLLQQR-------LVGERHLKVMVEPVGGGPLLDGIAFNVD 538 P+G P PLF L++ L G +H+K+ + G ++ I F V Sbjct: 470 AMLEPFGAQSPSPLF-----LIKNARLDAVVPLSGGKHIKLKLITETG--IIQAIYFGVQ 522 Query: 539 TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 + + + L LDI+ F G +++ + + ++ P+ Sbjct: 523 RSCFYYQPGAVLNLLVALDISFFNGVQTVSVKVKDVRPV 561 >UniRef50_A7KV88 SsDNA exonuclease n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7KV88_9CAUD Length = 577 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 166/572 (29%), Positives = 285/572 (49%), Gaps = 42/572 (7%) Query: 25 LLRRLYASRGVRSAQELERSVKGML--PWQQLSGVEKAVEILYNAFREGTRIIVVGDFDA 82 L+ + +RG+ +E R K L P++ + ++KAV + A ++ I + GD+DA Sbjct: 19 LIYDILEARGIEDVEEFLRITKKKLHNPYK-MRDMKKAVTRIIEAVQKKETIGIFGDYDA 77 Query: 83 DGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISS 142 DGA+STA+ VL +R LG ++ Y VP+RF+DGYG++ +D G L++T D GI++ Sbjct: 78 DGASSTAIWVLILRELGL-DVMYFVPDRFKDGYGVNQRGLDLFADNGVDLVITCDTGITA 136 Query: 143 HAGVEHARSLGIPVIVTDHHLP-----------------GDTLPAAEAIINPNLRDCNFP 185 V +A++ G+ +I+TDHH P GD L ++NP DC +P Sbjct: 137 IQQVAYAKNKGMDIIITDHHEPQESSAYKDDVQKVGQHIGDYLIPDTIVVNPKRPDCKYP 196 Query: 186 SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNR 245 K LAGVGV+F ++ A+ + G + +D+VALGT AD++ + NR Sbjct: 197 FKGLAGVGVSFKILCAVCDKIHPAGR--------AGAYQYMDIVALGTFADMMDIIDENR 248 Query: 246 ILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVA 305 ++ G+ + R G+ L AN + +++ + D+G+ + P +NAAGR+ V Sbjct: 249 VIGKLGIDMMNRKPNR-GLYQLFR-AN-ELKQITSQDIGWTIAPCINAAGRIVSAEEAVD 305 Query: 306 LLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM-YHPE 364 +L+ N A A +L +N+ RKE+ + + + +E + P + + Y+P Sbjct: 306 MLISTNKLAAYRCAKKLVEINKERKELTKTY---VGNIIKSVEADQIDNPTNIIVHYYPG 362 Query: 365 WHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMM 423 +G+VG++ASR+ F++P I A + G KGSGRSI G + +L R + G Sbjct: 363 IPEGIVGLIASRLMNHFYKPSIIMTDADEPGLYKGSGRSITGFDLFTSLMRQTDVMEG-- 420 Query: 424 LKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483 FGGHAMA GLS+ DKF+ + R L + LQ +V D + + ++ Sbjct: 421 --FGGHAMACGLSVTNDKFQELKTRMEFLADTMISEIDLQPKVYVDAIVKGNIIDLDFVD 478 Query: 484 LLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALW 542 + P+G+ +P F R++++ VG+ + G I F + Sbjct: 479 EMNKMEPFGRGHAQPSFMMEKMRVIREMPVGDEKNHLWALMSDGKKTFSTIGFFLYEKYE 538 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + + + + D NE++G +Q+ I ++ Sbjct: 539 ALGKPKNIDIVFVPDRNEYKGKVDVQLKIKDL 570 >UniRef50_UPI00017452AB single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017452AB Length = 620 Score = 231 bits (589), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 188/578 (32%), Positives = 286/578 (49%), Gaps = 52/578 (8%) Query: 15 TADLPAELPPLLRRLYASRGVRSAQELERSVKGML---------PWQQLSGVEKAVEILY 65 + L A LPPLL RL A RG+ + E KG L P+ L + +AV+ + Sbjct: 73 STTLGATLPPLLVRLLALRGLAT----EAQAKGFLQPRLAELGDPFI-LPQMRQAVDRIL 127 Query: 66 NAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE---VV 122 A ++++ GD+D DG TS L L +++ G +L P R E+GYGLS + Sbjct: 128 LAVDRQEQVVLYGDYDVDGVTSLTLMTLVLQAYGLQPHAFL-PLRMEEGYGLSHDGLLRC 186 Query: 123 DQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDC 182 + H + A L++ +D G S A + + G+ I+ DHH P LP A++NP L Sbjct: 187 FEEHGKPA-LLIAMDCGTVSVAETDWLQQEGVDCIIVDHHEPAHRLPTCVALVNPKLE-- 243 Query: 183 NFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA 242 A G+ ++ + L F R + +L E LDLVA+GTVAD+VPL Sbjct: 244 -------AHTGLTYFCTVGL-VFKLTHALLKTRRLDTFDLKEHLDLVAMGTVADLVPLKD 295 Query: 243 NNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSV 302 NR L +G+ ++ + R G+ AL +VA D + A +G+ LGPRLNAAGRLD Sbjct: 296 ENRALVRKGLEKLATTR-RVGLCALKQVAGVDG-FIQAHHIGYRLGPRLNAAGRLDTAQT 353 Query: 303 GVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL--PGGLAM 360 + LLLC++ AR A+ LDA N+ R+++E Q EAL + + TL + + Sbjct: 354 ALDLLLCEDPQFARECADLLDAHNRERQDVESVAQKEALAMMA----ADPTLGEAACIVL 409 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 WHQGVVGI+ASR+ HRP + A DG KGSGRS+ G+ + AL++ L Sbjct: 410 GSRSWHQGVVGIVASRLMRDHHRPTLLLAFGQDGHGKGSGRSVTGISLVAALDQCRHL-- 467 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 +LK GGH MA G+SL+E+ F+ V + L + +S +++T Sbjct: 468 --LLKGGGHPMAVGVSLKEENLADFRAAMSAAVESQITADELTPRLHLSAEISLSDLTPR 525 Query: 481 VAQLLRDAGPWGQMFPEPLF--DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD 538 + P+G EP+F G +L +++ E+H K+ + GG + FN Sbjct: 526 FLEQYTLLEPFGMGNHEPIFLCRGMEPILPGQVLKEKHWKLTLR--QGGQSRPAMWFNA- 582 Query: 539 TALWPDNGVREV--QLAYKLDINEFRGNRSLQIIIDNI 574 P N + +A K+ +RG + Q++I + Sbjct: 583 ----PLNDIPPPPWDVALKVQRQVWRGQETWQLMISEV 616 >UniRef50_Q3AK10 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Chroococcales RepID=Q3AK10_SYNSC Length = 618 Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 184/567 (32%), Positives = 284/567 (50%), Gaps = 41/567 (7%) Query: 17 DLPAELPPLLRRLYASRGVRSAQELERSVK-GMLP--WQQLSGVEKAVEILYNAFREGTR 73 DLP L +LRR RG S E + G LP +E+A + L A R R Sbjct: 11 DLPLALRCVLRR----RGFSSTSEAASFLSPGDLPPTRDHFPDLEQACDRLVAACRSRER 66 Query: 74 IIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLI 133 + + GD+DADG TSTAL + A+ LG + + +P+R E+GYGL+P +V + + G +L+ Sbjct: 67 VAICGDYDADGMTSTALLLRALAPLG-AEPEPAIPSRMEEGYGLNPAMVQRLYDDGVRLL 125 Query: 134 VTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVG 193 VTVDNG+++ +E A SL + VIVTDHH P A+I+P P + LAGVG Sbjct: 126 VTVDNGVAAREALELAASLTMQVIVTDHHTIPMERPPMTALIHPATTPEGSPYRGLAGVG 185 Query: 194 VAFYLMLALRTFLRDQGWFDERNIAIPNLAELL----DLVALGTVADVVPLDANNRILTW 249 +A+ + A+ L N E + DL +GTVAD+ PL NR Sbjct: 186 LAYVVAHAVAEAL--------------NKPEAIRVARDLFCIGTVADMAPLVGANRSWLL 231 Query: 250 QGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLC 309 +G++++ +C+ G++AL +A + L A D+GF L PR+NA GRL + + V LL Sbjct: 232 EGLNQLHRSECK-GVQALQHLAGLGERPLTAEDIGFQLAPRINAVGRLGEPRLVVDLLTA 290 Query: 310 DNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGV 369 ++ A LA D N+ R+++ ++ EA+ L E S + LP L + WH GV Sbjct: 291 EDPDSAMALARRCDDCNRQRRDLCDAIEAEAVALVEA--ESDEALPSFLLLAQSHWHHGV 348 Query: 370 VGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGH 429 +GI+A+R+ ER+HRP A GDG+L+ S R G + AL L + +FGGH Sbjct: 349 IGIVAARLMERYHRPTALLAGEGDGSLRASVRGPIGFAVDRALSSCSDL----LTRFGGH 404 Query: 430 AMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAG 489 A G +++ + +R WL V D L ++ ++ + L+ Sbjct: 405 PAAGGFTVKAELVHALHERLCSEADSWLMTQAQGRPVQPDALLQLKDVNWDLWRHLQSLA 464 Query: 490 PWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD-TALWPDNGV 547 P+G P+PLF + +R + HL + + G IA+ D +A P+ Sbjct: 465 PFGIGHPKPLFWSRGVSVGDRRDLKGGHLALTLRQ--GESERRAIAWRWDSSAAVPEC-- 520 Query: 548 REVQLAYKLDINEFRGNRSLQIIIDNI 574 +AY + IN ++G + LQ+ + I Sbjct: 521 --CDVAYSISINRWQGEQRLQLELKAI 545 >UniRef50_UPI00016C4908 single-strand DNA-specific exonuclease n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4908 Length = 592 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 196/580 (33%), Positives = 291/580 (50%), Gaps = 42/580 (7%) Query: 20 AELPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSGVEKAVEILYNAFREGTRII 75 A + ++ +L +RGVR A R + L P L GV++A E + A RI Sbjct: 25 ARVSSVVAQLLLNRGVRDAAAARRFLDSPLGALHPPLALPGVKEAAERVVRAVTARRRIC 84 Query: 76 VVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVT 135 V GD+D DG T T++ + + LG +++ + VP R +GYGL+ E + + + G QL+++ Sbjct: 85 VYGDYDVDGVTGTSILLRVLGKLG-ADVQFHVPLRLSEGYGLNSERLHELYRNGVQLVIS 143 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHH-----LPGDTLPAAEAIINPNLRDCN-FPSKSL 189 VD GI+S A + AR LG+ +IVTDHH L G LP A+ +++P LR +P L Sbjct: 144 VDCGIASIAEAQTARDLGLELIVTDHHEMKMGLDGPLLPVADVLVHPRLRAAEPYPFGDL 203 Query: 190 AGVGVAFYLMLAL--RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRIL 247 +G GVAF L A+ R ++ D R + L + + L ALG VADVVPL NR+ Sbjct: 204 SGAGVAFKLAWAVAQRASGSEKVSADLREV----LLDSVGLAALGLVADVVPLRDENRVF 259 Query: 248 TWQGMSRIRAGKCRPGIKALLEVAN-RDAQKLAASDLGFALGPRLNAAGRLDDMSVGVAL 306 G+ RI+A G+KALL+ + + Q L A D+GF L PRLNAAGRL S V L Sbjct: 260 VRHGLERIKANPS-VGLKALLDASGVKPDQVLTAEDVGFKLAPRLNAAGRLGCASFAVEL 318 Query: 307 LLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWH 366 L + +AR LA +L+A N R+ E+ A L E E+ D + + PEWH Sbjct: 319 LTTQSPTKARQLAEQLEAQNGDRQARERKYTQAAKELVE--EQFADD--PAIVVGSPEWH 374 Query: 367 QGVVGILASRIKERFHRP--VIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMML 424 GVVGI+ASR+ + F +P VIA P + GSGRS+ G + AL D + G Sbjct: 375 PGVVGIVASRLVDYFGKPALVIAMQP-NEAVSTGSGRSVTGFALHTALVACDDILEGHGG 433 Query: 425 KFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQL 484 A AAGL + D+ + RF V + D + + +T + Sbjct: 434 H----AAAAGLKVRPDRIPALRDRFNAYVRSHYPGGAPAQTLTLDAEVPLSALTFGLIND 489 Query: 485 LRDAGPWGQMFPEPLF-DGHFRLLQQRLVG----ERHLKVMVEPVGGGPLLDGIAFNVD- 538 L P+G P P F ++ RL+G +RH+ V G + +A+ + Sbjct: 490 LDKLEPYGAGNPRPKFLAAGLKVEAARLIGTGEIQRHMDFRVRQ--GDTTIRCVAWGMAD 547 Query: 539 --TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 L G + LA+ INE++G+R L++ + ++ P Sbjct: 548 RMEELMSAGG--DCCLAFTPKINEWKGSRKLELQVIDLKP 585 >UniRef50_Q7NPL4 Single-strand-DNA-specific exonuclease n=1 Tax=Gloeobacter violaceus RepID=Q7NPL4_GLOVI Length = 773 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 186/563 (33%), Positives = 282/563 (50%), Gaps = 56/563 (9%) Query: 22 LPPLLRRLYASRGVRSAQELERSV---KGMLPW--QQLSGVEKAVEILYNAFREGTRIIV 76 L PL+ ++ +RG+ + + E + +LP + + +A+++L A GT I + Sbjct: 33 LSPLIAQVLINRGLTTCELAEHFLAPESWVLPSAGEAFDQLPRALDLLAQAIESGTAIAI 92 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+D DG TSTAL + A+RSLG +I+Y +P+R ++GYG++ +V+ + RG LI+TV Sbjct: 93 CGDYDCDGMTSTALLLRAVRSLG-GHIEYAIPSRLQEGYGINLRIVEAFYERGIGLILTV 151 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 DNGI ++A + A LG+ VI+TDHH + LP A+AI+NP + P +LAGVGVA+ Sbjct: 152 DNGICAYAPIARAVELGMGVIITDHHDLPERLPPADAILNPKMIPRTSPYAALAGVGVAY 211 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L L L G D LL+L LGTVAD+ PL NR G+++I Sbjct: 212 VLAGELARRLGRTGLAD----------CLLELFTLGTVADLAPLVGVNRAWVLSGLAKI- 260 Query: 257 AGKCRPGIKALLEVANRDAQK-LAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 G G++ALL + + L +GFALGPR+NA GR+ D + LL D+ A Sbjct: 261 PGSSNTGVQALLAASGLAGRSDLKPEAIGFALGPRINAVGRIGDPVTVIELLTTDDPAVA 320 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL--------AMYHPEWHQ 367 A E + NQ R+ + ++ EA + E +E++ GGL + WH Sbjct: 321 AERAAECELANQHRQALCAQIEAEAARMLE-VEQA-----GGLDLGCERVIVLAREGWHH 374 Query: 368 GVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 GV+GI+ASR+K+R PV A G+ +GS R H+ +AL+ L G FG Sbjct: 375 GVIGIVASRLKDRHGAPVFIAAIEGEHA-RGSARGTPEFHVYEALKDSAELLTG----FG 429 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRD 487 GH MA G SL F++R + L P + V D + A + + + Sbjct: 430 GHPMAGGFSLLAANLPAFRERLVQFARARLAPEQVAPLVEVDAQVQLARVDRRLLGEIDR 489 Query: 488 AGPWGQMFPEPLF-DGHFRLLQQRLVGE--RHLKV---------------MVEPVGGGPL 529 P G EP+F R+++Q+ +G+ HL + M E + P Sbjct: 490 LQPCGLGNAEPVFWVAGARVVEQKAMGKTRTHLNLTVSDGTAERRAVGWRMAEWLPLPPF 549 Query: 530 LDGIAFNVDTALWPDNGVREVQL 552 +D IAF V W + E++L Sbjct: 550 VD-IAFQVKENNWQGHSKVELEL 571 >UniRef50_Q2RHV6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHV6_MOOTA Length = 911 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 173/525 (32%), Positives = 266/525 (50%), Gaps = 25/525 (4%) Query: 48 MLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLV 107 ++P +++ G+ A E L A + +I+V GD+D DG +TA+ + + LG YL Sbjct: 48 LIPPEKIPGLPAARERLVQAIEKREKIMVHGDYDVDGLAATAIMLETLARLGVEAEVYL- 106 Query: 108 PNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT 167 P+R +GYGL + + +A QL++TVD GI+S AR G+ +I+TDHH PG + Sbjct: 107 PDRLTEGYGLKKKSLIKALELNCQLVITVDCGITSLEEAIFAREQGLDLIITDHHRPGTS 166 Query: 168 LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLD 227 LP A A++N L G GVAF L +L T G + +A LD Sbjct: 167 LPQASAVVN---PLLAPGLPPLCGAGVAFKLAQSLATHF---GLAPQGGVAA---GWALD 217 Query: 228 LVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFAL 287 LVAL T+AD VPL NR+L G+ + +G RPG+KAL EVA A++ A ++ F L Sbjct: 218 LVALATIADAVPLLGENRLLVQLGLKAL-SGSMRPGLKALAEVAGLPAREWTAREVAFGL 276 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 PRLNA GRL + + +LL + A LA L NQ R+ +E+ + EA + Sbjct: 277 VPRLNACGRLGNAMPALEILLTSSPQRALELAQRLQEENQARRHLEESIAAEAEAMAVTA 336 Query: 348 ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLH 407 + GL + WH GV GI+A+R+ E+++ PV+ A GD +GSGRS+ G++ Sbjct: 337 LAAGAK---GLVLAAEGWHPGVTGIIAARLVEKYNCPVVLIAVVGDRG-RGSGRSLPGIN 392 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 + + R + +L FGGHA A GL + + FQ F E+V + EV Sbjct: 393 LHEIFARCRS----YLLSFGGHARAGGLEIAAKEIPAFQAAFNEIVKSLMAEVQTPPEVA 448 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ-QRLVGERHLKVMVEPVGG 526 + + +++ ++ + L P+G+ P P+ L++ R VG + + G Sbjct: 449 PEAEVLVSQLDWQLLEELEQLAPFGEGNPRPVLVTRRALIKAARQVGRDGAHLKLTAGGE 508 Query: 527 GPLLDGIAFNVD--TALWPDNGVREVQLAYKLDINEFRGNRSLQI 569 G + I FN+ L P + V LA+ L+ N +R LQ+ Sbjct: 509 GREIGAIGFNLSLPPGLSPGH---HVDLAFYLERNTYRDREELQL 550 >UniRef50_A5TTL1 Recombination protein J n=7 Tax=Fusobacterium RepID=A5TTL1_FUSNP Length = 844 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 159/532 (29%), Positives = 268/532 (50%), Gaps = 61/532 (11%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L ++ A + ++ A + +I + GD+D DG TS +L LA+ L +N++Y +P R ++ Sbjct: 53 LKDMDIATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLALSELS-ANVNYYIPLR-DE 110 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH-LPGDTLPAAE 172 GYGL+ + + A L+++VD GI+S + A L + I+TDHH + GD +P A Sbjct: 111 GYGLNKDAIQNLKNENADLVISVDCGINSIEDINFANELNLDFIITDHHEITGD-IPKAL 169 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 AIINP + + K LAGVG AF L+ AL + + +L + LD+VA+G Sbjct: 170 AIINPKREENIYSFKYLAGVGTAFMLVYALYIKMN----------KLNDLEKYLDIVAIG 219 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVA---NRDAQKLAASDLGFALGP 289 TVAD+VPL ++NR +G+ +R K GIK LL N D ++ A D+G+ + P Sbjct: 220 TVADIVPLISDNRKFVKRGLETLRNSKW-IGIKQLLRKIFPDNWDTREYFAYDIGYIIAP 278 Query: 290 RLNAAGRLDDMSVGVALLL------CDNIGEARVLANELDALNQTRKEIEQG-MQIEALT 342 NAAGRL+D V L + C +I E ++L N ++ N +K +E ++IE Sbjct: 279 IFNAAGRLEDAKQAVTLFIEEDGFRCLSIIE-KLLENNIERKNIQKKILEMSIIEIEKKQ 337 Query: 343 LCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFA-PAGDGTLKGSGR 401 L K + + + +H GV+GI+AS+I +++++P I +G S R Sbjct: 338 LYNK---------NLILVANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGIATASCR 388 Query: 402 SIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSL 461 SI GL++ + L + +++K+GGH+ AAG +++ + + F QR + E D L Sbjct: 389 SIDGLNIVECLNSV----SDILVKYGGHSGAAGFTIKIENIEEFYQRIDSYIEENFDKDL 444 Query: 462 LQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF---DGHFRLLQQRLVGERHLK 518 ++ + L+P ++ E + L P+G P+F + + L+ HL Sbjct: 445 FIKKLKIEKILAPYKVNYEFLKELEILEPYGAKNHTPIFAFRNCQYENLRFTKNSTEHLM 504 Query: 519 VMVEP----------VGGGPLLD--------GIAFNVDTALWPDNGVREVQL 552 + ++ GGG D IAF + ++ D + ++QL Sbjct: 505 LDIKKDGYNFKNCIFFGGGDYYDIISSSKNIDIAFKLKLEIFKDRYMCKLQL 556 >UniRef50_B1I335 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I335_DESAP Length = 857 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 191/559 (34%), Positives = 287/559 (51%), Gaps = 43/559 (7%) Query: 25 LLRRLYASRGVRSAQELERSVKGMLP--WQQ--LSGVEKAVEILYNAFREGTRIIVVGDF 80 L +L +RG+ + +E + G L W L + V+ + A G +I+V GD+ Sbjct: 29 LTAQLLVNRGIITVREARIFLDGDLDSLWSPYLLRDMAPTVDRIRGALAAGEKILVYGDY 88 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 DADG T+ AL V A+R+L ++Y +P R DGYGL+PEV+++A A G L++TVD G+ Sbjct: 89 DADGMTAAALMVAALRTLR-GRVEYHIPWR-ADGYGLNPEVLERAAADGVGLVITVDCGV 146 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 S+ +E A++LG+ V+VTDHH P LP ++NP DCN+P K LAGVGVAF L Sbjct: 147 SARREIERAQALGLDVVVTDHHEPQGLLPPV-PVVNPRRPDCNYPFKDLAGVGVAFKLAQ 205 Query: 201 ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKC 260 AL L D+ +P L L LGTVADV+PL NR+L G+ ++ Sbjct: 206 AL---LGDE---------LP--PPFLGLACLGTVADVMPLRGENRLLVRHGLPQLLDN-- 249 Query: 261 RPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLAN 320 PGI AL + D+ F + P LNAAGR+ +GV +LL GEA LA Sbjct: 250 -PGIAAL---GACQGENPVVRDVAFGIAPLLNAAGRIGRPELGVEILLA-GPGEAAALAA 304 Query: 321 ELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKER 380 +L ALN+ RK +E+ + L L +P + + +WH GV+GI+ASR+ R Sbjct: 305 QLAALNEERKYLEEKVSAAVLAELSGLPE----VPPVVVLAGEDWHPGVIGIVASRLAGR 360 Query: 381 FHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEED 440 RPV A GD +GS R+ +G ++ +ALE ++ +FGGH AAG +L Sbjct: 361 LGRPVALIAVDGDEG-RGSIRAGEGWNLVEALESCRE----VLTRFGGHRCAAGFTLPTA 415 Query: 441 KFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF 500 F++ P+ E+ + ++ ++T EV + + PWG P+ Sbjct: 416 AIPGFREAICRYARHLPVPA-SGPELEIEALVTLDQLTPEVLREIEALEPWGAQNDPPIL 474 Query: 501 DGH-FRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLD 557 R+++ VG HLK+++E G ++ GI F + A R V LA+ Sbjct: 475 AAEDLRVVKHYRVGREGEHLKLVLE--QGRTIISGIGFGLAPAHPEIAECRRVHLAFVPV 532 Query: 558 INEFRGNRSLQIIIDNIWP 576 IN + G + +I + + P Sbjct: 533 INRWNGRETPEIKVVDWKP 551 >UniRef50_C4FWR9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FWR9_9FIRM Length = 777 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 171/555 (30%), Positives = 278/555 (50%), Gaps = 36/555 (6%) Query: 28 RLYASRGVRSAQELERSVKGMLPWQQ----LSGVEKAVEILYNAFREGTRIIVVGDFDAD 83 RL +RG+ + +E++ + M L +E+AVE + A + I++ GD+DAD Sbjct: 37 RLCLARGLETLEEIKNATNQMPQTFHDAFLLYDMERAVERIQAAIEDQEVILIYGDYDAD 96 Query: 84 GATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSH 143 G TST + + LG I Y VPNR DGYG + +G QLI+T DNG++ Sbjct: 97 GITSTLILYETLEMLGARVI-YYVPNRLVDGYGPNLARYQDFVNQGVQLILTCDNGVAGF 155 Query: 144 AGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALR 203 ++ A G+ VIVTDHH TLP+A A+++P ++P L+G GVA L AL Sbjct: 156 EAIKWAMQAGVDVIVTDHHEVQATLPSAYAVVHPRHPQGHYPFPDLSGAGVALKLATALL 215 Query: 204 TFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPG 263 +P EL++L A+GTV+DVV L NR + G+ +R R G Sbjct: 216 G-------------EVPT--ELVELAAIGTVSDVVSLRDENRTIVLSGLQLMR-DTMRIG 259 Query: 264 IKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELD 323 ++ +LE D + + A +GF +GPRLNA GRL D + + LL + EA+ L ++ Sbjct: 260 LRLMLEEEQVDMENMTADTIGFTIGPRLNAIGRLGDPTPALELLKTQDEEEAQELLALIN 319 Query: 324 ALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHR 383 NQ RK++ + + + ++L + +P + P W GVVGI+A R+ E + R Sbjct: 320 EKNQERKDLVAKIMDQ---VSQRL--GQGPIPHIIIESDPSWPAGVVGIVAGRLSEHYQR 374 Query: 384 PVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKF 442 P + F D G KGSGRS + +H+ D L + + +FGGHA AAG+++ +D++ Sbjct: 375 PALIFQYQADEGQYKGSGRSTEAVHLFDWLTDIKE----HLAQFGGHAQAAGMTVAQDQW 430 Query: 443 KLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD- 501 + F D + + D L E+ + Q ++ GP+G +P+F Sbjct: 431 QEFVSALQAKAQVQTDIGTRKAPLTIDLSLKLGEVGTDFIQEVQLLGPFGMDNDKPVFAI 490 Query: 502 GHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDIN 559 ++ Q RL+G +H K+++ G L+ I F+ + + LD+N Sbjct: 491 EEAKINQMRLIGTNGQHAKLVLGQ--DGQELNAIGFDFADRMRDRQVGDSLTAVGHLDLN 548 Query: 560 EFRGNRSLQIIIDNI 574 +++ S Q+++ +I Sbjct: 549 KWQNRISPQLLLSDI 563 >UniRef50_B4UA60 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4UA60_HYDS0 Length = 557 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 164/520 (31%), Positives = 283/520 (54%), Gaps = 59/520 (11%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA 60 +K QIQ +D++ADL + + L R + + ++L+ +K + ++ L + +A Sbjct: 11 VKSQIQ----SLDDSADLYS---LVFNTLLGLRNI-NIEDLDVKLKNIPSFELLPNINQA 62 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 V+ L A + RI++ GD+D DG TST + ++ +G +N+ ++PNR GYGLS E Sbjct: 63 VDRLVKAIKSKERILLYGDYDVDGVTSTTIMYDFLKQIG-ANVVPVLPNR-NSGYGLSKE 120 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHAR-SLGIPVIVTDHHL--PGDTLPAAEAIINP 177 ++D ++ + L++T+DNG ++ ++A+ + I+ DHH+ G+ LP A ++NP Sbjct: 121 IID-LFSKYSNLVLTLDNGTTAVHETKYAKEKYNMDFIILDHHMINHGEHLPEA-ILVNP 178 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 NL N K L G++FY++ ALR L FD + + LDLVA+GTVADV Sbjct: 179 NLEKDN-KLKGLCTAGLSFYMVGALRRALGVD--FD--------IKKYLDLVAVGTVADV 227 Query: 238 VPLDANNRILTWQGMSRIRAGKCRP----------GIKALL----EVANRDAQKLAASDL 283 +P+++ NR+L +G+ I K P G+KAL+ + N + + + A D+ Sbjct: 228 MPINSLNRVLISKGLELINKIKDMPWDMATDFGKAGMKALINYISKTQNGNQKIITAKDI 287 Query: 284 GFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTL 343 GF++ PR+NAAGR+ + + LL N +AR+LA +L+ +NQ R+ I M EA +L Sbjct: 288 GFSIAPRINAAGRIRKPQIALKLLAEKNYEKARILAEDLNKINQDRRRISNEMFKEAYSL 347 Query: 344 CEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSI 403 +S D + + WH GV+GI+A R+ + +P F + GS RS+ Sbjct: 348 A---SQSNDDF---VILGKQTWHHGVLGIVAGRLSNKLKKPTGIFHINNTHAV-GSIRSV 400 Query: 404 QGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTE---WLDPS 460 +GL + L L ++ K+GGHA AAG++++++ F F+Q+ +L+ +D Sbjct: 401 EGLDVHKLLSNLSYMFD----KWGGHAGAAGVTIKKEYFDAFRQKINDLLKRESFEVDRV 456 Query: 461 LLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF 500 L EV + PL + + +++ P+G++ PEP+F Sbjct: 457 L---EVDMELPLRSVD--KRIGEIIEKLSPYGELNPEPIF 491 >UniRef50_Q6ALW7 Related to single-strand DNA-specific exonuclease n=1 Tax=Desulfotalea psychrophila RepID=Q6ALW7_DESPS Length = 552 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 185/568 (32%), Positives = 277/568 (48%), Gaps = 42/568 (7%) Query: 26 LRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 + ++ + RG + AQ +E + L P+ L G+++AV + A EG I++ GD+ Sbjct: 7 IEQILSLRGYQEAQAIEEFLSPRLSSLPHPFTML-GMKEAVAEVLRAIDEGLPILIWGDY 65 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ-AHARGAQLIVTVDNG 139 D DG T T++ V + + + +P+R +GYGL+ A L++TVD G Sbjct: 66 DVDGTTGTSILVNFFERIDV-KVYWHIPSRLTEGYGLNLTYFQNLPWAEEHFLLITVDCG 124 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199 IS+ +E + G VIVTDHH +P ++NP+ C F SLAGVGVAFYL+ Sbjct: 125 ISNATEIEAIKKRGGRVIVTDHHQLPKRVPNC-TVLNPSNEKCPFYGTSLAGVGVAFYLV 183 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 +R L + + + PNL L VA GT+ADVVPL NR+L G+ A Sbjct: 184 AGVRNALVSGELNGKYSQSTPNLKSFLGFVAFGTLADVVPLTPVNRLLVKAGVESF-ART 242 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 G++ALLE ++ + + D+GF L P++NAAGR V LL A +A Sbjct: 243 EFIGLQALLESSDIADGSVTSDDIGFNLAPKVNAAGRYGVAHQVVELLTSKEAEPAYKIA 302 Query: 320 NELDALNQTRKEI--EQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 L LN RK + E +IE L E ++ + G ++ +G++GILASR+ Sbjct: 303 KTLTKLNNDRKLLCKENMAEIETLLHIETIKADACIIVEG------DFFEGILGILASRL 356 Query: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 +RFH P I F+ A DG LKGS RSI+ +++ D + L + KFGGH MAAG+S+ Sbjct: 357 VDRFHLPAIVFSRAADGDLKGSARSIEEINILDVITETSFL----LKKFGGHKMAAGMSM 412 Query: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ--------LLRDAG 489 F F+ F E +L + EV S E+ V Q L + Sbjct: 413 SPLNFAAFRSAFVE--------NLQRAEVKEIKQESRYELDASVEQVFNPDSLALYQKME 464 Query: 490 PWGQMFPEPLF-DGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALWPDNG 546 P+G P+P F D H ++ R VG+ HL++ + G + I FN+ Sbjct: 465 PFGPGNPQPTFYDAHALIVAARPVGQSKEHLQLTIRGKYGDN-IKAIGFNLGEKGRNVIA 523 Query: 547 VREVQLAYKLDINEFRGNRSLQIIIDNI 574 V++ + IN F+ S Q I +I Sbjct: 524 GSTVKIIFTPTINRFKERVSWQARILDI 551 >UniRef50_C1XP89 Exonuclease RecJ n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XP89_9DEIN Length = 723 Score = 228 bits (580), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 184/556 (33%), Positives = 276/556 (49%), Gaps = 66/556 (11%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 +PPL + +RG R L+ ++ + + G+E+A + A +G RI + GD+D Sbjct: 23 IPPLAAAVLFNRGFRDPALLDPPLELL----PIRGLEEAAWRVVRALEQGERIRIHGDYD 78 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 ADG T TA+ + + LG + + VP+R +GYG+ E + + H L +TVD GIS Sbjct: 79 ADGLTGTAILLGGLARLG-AKVHAFVPHRLHEGYGVLMERIPE-HLEACDLFITVDCGIS 136 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI---INPNLRDCNFPSKSLAGVGVAFYL 198 +HA ++ GI V+VTDHH PG+T P + + P L P+ G GVA+ L Sbjct: 137 NHAELKSLVEHGIGVLVTDHHSPGETPPPGLVVHPALTPELNGLPHPT----GAGVAYLL 192 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 + +R L + P E DL A+GT+ADV PL NR L +G+ ++R Sbjct: 193 LWKVRELL---------GLGAP--VEFADLAAIGTIADVAPLLGFNRALVKEGLRQLR-- 239 Query: 259 KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVL 318 + L E+A++ + A ++ F + PR+NAA RL + + LL DN+ AR L Sbjct: 240 --QSAHLGLRELASQHCKDYTAVEVAFRIAPRINAASRLGQAELALELLTTDNLLAARQL 297 Query: 319 ANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIK 378 A +L+ LN R+ IE+ M L + D ++ PE + GV+GI+ASRI Sbjct: 298 AEDLNTLNARRQRIEEEMLNRVLP-------TLDHAAPAYVVHDPEGNAGVMGIVASRIL 350 Query: 379 ERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLE 438 ERF++PV A KGS RS G+ AL + + GGHA AAG ++ Sbjct: 351 ERFYKPVFIIAEG-----KGSVRSTPGISAVGALRASAEF----LKRLGGHAQAAGFAIA 401 Query: 439 EDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEP 498 E+ F++ V E P EV DG L+ + T E+ + L+ P GQ PEP Sbjct: 402 EENIPAFREAVYRYVAEHPAPV---AEVYLDGSLTGEDFT-ELYEALQFLEPLGQENPEP 457 Query: 499 LFDGHFRLLQQRLVGE-RHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVR----EVQLA 553 LF + + +GE RHL+ LDGI W D+G EV+LA Sbjct: 458 LFYLRGKPEKVATMGEGRHLRFY---------LDGI----KVVRWKDSGENLPQAEVELA 504 Query: 554 YKLDINEFRGNRSLQI 569 L +NE++G R+L++ Sbjct: 505 ASLTLNEWQGERALEL 520 >UniRef50_A4IZE2 Single-stranded-DNA-specific exonuclease RecJ n=19 Tax=Francisella RepID=A4IZE2_FRATW Length = 580 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 174/569 (30%), Positives = 284/569 (49%), Gaps = 46/569 (8%) Query: 32 SRGVRSAQELER----SVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATS 87 S VR + LE S+K + +EKAVE LY A + I + D D DG TS Sbjct: 30 SARVRKIENLELILNGSIKDLSSPFLFKDIEKAVERLYQALQNNEIIGLETDHDCDGQTS 89 Query: 88 TALSVLAMRSLG---CSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQ--LIVTVDNGISS 142 A+ A+ + I + +R ++GYGLS ++++ + LI+T DNG + Sbjct: 90 HAILYEALTKIFGHPKEKIRSYIGHRLQEGYGLSESLMNRILTDKIRPSLIITADNGSTD 149 Query: 143 HAGVEHARSLGIPVIVTDHHL--PGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 + + GI I+TDHH P T +A A++NP + CN+P K++AG VA+ M Sbjct: 150 EPRIAILKKNGIDTIITDHHAIPPEGTPKSAIAVLNPTQQGCNYPDKAIAGCMVAWLFMA 209 Query: 201 ALR-TFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL--DANNRILTWQGMSRIRA 257 ALR +L++ + L+ LLD VA+GTVAD V + NNRI+T G+ +++ Sbjct: 210 ALRRKYLQNNKMISQS----YGLSNLLDFVAIGTVADCVSMATSHNNRIVTKFGIEQLKN 265 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 + + + ++D KL++ +GF++ P LN+ GR+ D V+ LL ++ + Sbjct: 266 NQ-----RLCWDFVDKD--KLSSEYIGFSIAPILNSDGRVSDALGSVSFLLEEDEHKIED 318 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 + + L N RKEI++ + EA+ +L + +++L + + H G+ GI ASRI Sbjct: 319 IFDNLKQQNNQRKEIQKKLTQEAIVQAYQLNQQKNSL----CILLEDGHSGIHGISASRI 374 Query: 378 KERFHRPVIAFAPA-GDGTL-KGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 KE F + VI F+ D TL GS RSI +H++ L+ + P +++K+GGH AAGL Sbjct: 375 KEMFGKAVIIFSQTQHDSTLISGSARSIDNIHIKTILDNIAVKEPQLIIKYGGHKGAAGL 434 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPS--LLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQ 493 ++++ F F Q F +T+ + +L+ + D L +E + P+G+ Sbjct: 435 TIKKSDFDKFYQLFESEITDIITKQNIILEPIIEYDFELDEHHFELETLDKIDALEPFGR 494 Query: 494 MFPEPLFDGHFRLLQQRLVG-ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVRE--- 549 F +PLF F L RLVG +++ +V + I FN DN + E Sbjct: 495 KFEKPLFCNQFMLENLRLVGKDKNHAQLVLRYKNISSIKAIWFNA-----TDNKILEQLI 549 Query: 550 ----VQLAYKLDINEFRGNRSLQIIIDNI 574 ++ Y+L EF G +L + I I Sbjct: 550 IGDCIKACYELQKEEFLGQINLSLNIKTI 578 >UniRef50_B2USH8 Single-stranded-DNA specific exonuclease n=20 Tax=Helicobacter RepID=B2USH8_HELPS Length = 516 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 149/470 (31%), Positives = 244/470 (51%), Gaps = 47/470 (10%) Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KA + A R T I+VVGD+DADG S+ + SL ++ ++PNRF DGYG Sbjct: 32 LKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVIPNRFIDGYG 91 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH-LPGDTLPAAEAII 175 +S + +++ H A LI+TVDNGIS+ + +I+TDHH L D +P A A+I Sbjct: 92 ISKKFLEKHH---APLIITVDNGISAFEATRFCKEKNYTLIITDHHCLHHDEVPDAYAVI 148 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP DC+F K + G VAFYL + L + + +ELL L + T+A Sbjct: 149 NPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEK---------SHSSELLCLAGVATIA 199 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDA---QKLAASDLGFALGPRLN 292 D++PL NR L + + ++ + + A+ + R+ + L ASD+ F++ P +N Sbjct: 200 DMMPLTFFNRFLVSKALYFLQ----KESLGAMGFLRQREVFRKRSLKASDISFSIAPLIN 255 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALT---LCEKLER 349 +AGR+ D + + L +N + L L A N RK I+Q + EAL + EK+ Sbjct: 256 SAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVFEEALKHAMVGEKI-- 313 Query: 350 SRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMR 409 + + +WH+GV+GI+AS++ E +P + F +G KGSGRS + + Sbjct: 314 --------IVAFKDDWHEGVLGIVASKLVEATQKPSLVFT-FKEGVYKGSGRSSSNIDLI 364 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSL-EEDKFKLFQQRFGELVTEWLDPSLLQ-GEVV 467 DAL + +L +L +GGH A GLS+ + + LF+ E D +L E Sbjct: 365 DALNGVSSL----LLGYGGHRQACGLSVGKNNIISLFE------TLENFDFKILPFCEKE 414 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERH 516 L+ ++ E+ +++ P+GQ PEPLF + +++++++ E H Sbjct: 415 PPLTLTLKDIDRELLEIIEMGEPYGQENPEPLFQAQNLEVIEEKIIKESH 464 >UniRef50_C2YFF0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Bacillus cereus AH676 RepID=C2YFF0_BACCE Length = 558 Score = 224 bits (572), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 153/496 (30%), Positives = 249/496 (50%), Gaps = 59/496 (11%) Query: 23 PPLLRRLYASRGVRSAQELER----SVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVG 78 P L++ L+ +++ Q++ + S+ + + ++KAV + NA I + G Sbjct: 36 PSLIQYLFF-HNIKNWQDIYQFLYPSINNLYDPFLFNDMKKAVTRILNAIANKENIFIFG 94 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DG TST L ++ LG +N+D+ +P R E+GYGL+P V + + LI+TVDN Sbjct: 95 DYDCDGITSTTLLFQCLQKLG-ANVDFKLPLR-EEGYGLTPTAVHKIADKNISLIITVDN 152 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 G S+H ++ A+ GI VIVTDHH + P A INP D +P LAGVGVAF L Sbjct: 153 GSSAHDAMKIAKQYGIDVIVTDHHEITEKHPDCYAFINPKRTDSTYPFSDLAGVGVAFKL 212 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 AL + Q +++ + ++ ++L ALGT+AD++PL NRI+ G+ +I Sbjct: 213 AHALH--ITTQTNWNQ------SYSKYIELAALGTIADLMPLSDENRIICHLGLRKINTN 264 Query: 259 KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVL 318 K +L R+ ++ +S +G+ + P NA GR+ D ++ V +L +I E + Sbjct: 265 PSY-AFKLILNTMKRN--QITSSTIGYQIAPLFNALGRIADPNLAVHVLTDTHINEKSI- 320 Query: 319 ANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIK 378 + L LN+ RK+ M + + C+++ S+ + + H E+H G++GILAS+I Sbjct: 321 -STLFQLNEKRKQ----MTVSQFSECQRIICSKKLHDNHVIVVHGEFHHGLIGILASKIT 375 Query: 379 ERFHRPVIAFAPAGDGTLKGSGRSIQGLHMR--DALERLDTLYPGMMLKFGGHAMAAGLS 436 E + +P I + G GS RS+ G + + L R + K+GGH AAG S Sbjct: 376 EIYQKPAIVISNTG----TGSCRSVNGTNFSIINTLSRCSE----HLSKYGGHQAAAGFS 427 Query: 437 LE--EDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM------EVAQLLRDA 488 +E E+ F Q +Q + P+ P ++ E Q L Sbjct: 428 IEMKEEVLDKFHQN-------------IQVSATFEEPIMPTKLYFNKHCPNEFVQYLYPE 474 Query: 489 ----GPWGQMFPEPLF 500 P+GQ F +P+F Sbjct: 475 IFLLEPFGQRFEQPIF 490 >UniRef50_D1AL25 Single-stranded-DNA-specific exonuclease RecJ n=4 Tax=Fusobacteriaceae RepID=D1AL25_SEBTE Length = 560 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 153/539 (28%), Positives = 274/539 (50%), Gaps = 33/539 (6%) Query: 24 PLLRRLYASRGVRSAQELER----SVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGD 79 L+ L +RG+ + +++++ S++ + +E+ VE + A + +I + GD Sbjct: 24 KLITELLLNRGITNKEDVDKFLNPSMENINDPFLFEDMERIVERIIIARKNKEKIFIYGD 83 Query: 80 FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139 +D DG + TA ++ +R+LG NIDY + NR +G ++ V+ R A+L++TVD Sbjct: 84 YDVDGISGTAYLIIVLRNLGI-NIDYFIQNRVHEGSKINKHFVNYIKKRNAKLVITVDTS 142 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199 S +E GI +I+TDHH + L INP + +P K L+G G+A+ L Sbjct: 143 FGSTEEIELLTKNGIDLIITDHHRQTNKLKLDVKTINPKISKT-YPFKHLSGSGMAYKLA 201 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 A+ ++ ++ L + +D+V +GTVADVVP+ NR + QG++ +R K Sbjct: 202 DAV---------YERLGVSKKILHDYMDIVMIGTVADVVPMTDENRFIIKQGLANLRKTK 252 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 + G++ L+ +A + SD+GF + P LNA GR+D + V + + + Sbjct: 253 VK-GLEYLIVYLKLNAYSINTSDIGFYIAPMLNALGRIDSSKMVVDFYIEKDDFRIFNII 311 Query: 320 NELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKE 379 E+ N+ R+ +E + E + EK+ + R+ P + M +WH GV G+++SR+ Sbjct: 312 EEMKRANKIRRYLEINIYNE---IEEKIAKMREK-PKYIFMKSKKWHSGVTGVVSSRLSL 367 Query: 380 RFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEE 439 +++ PVI + +G K S RS++GL++ D L+ + + +FGGH +AAG + E Sbjct: 368 KYNIPVIIIS-IKNGYGKASCRSVEGLNIFDILKEISHKFE----RFGGHDLAAGFLVTE 422 Query: 440 DKFKLFQ-QRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEP 498 LFQ +++ + L+ S ++ + + D LS + + + + P+G EP Sbjct: 423 K--VLFQIEKYLKNKLYRLNKSDIEKKFLIDSYLSIENINKTLVKEINKLSPFGLDNQEP 480 Query: 499 LF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAY 554 F D + LL G RH K MV V G L I +N+ + N +++++ Y Sbjct: 481 NFTDNNVTLLNYTKFGVDSRHFKGMV--VKGNKKLPVIGYNLGDKIDTKNSGKKIEILY 537 >UniRef50_Q1IXZ0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IXZ0_DEIGD Length = 702 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 178/548 (32%), Positives = 271/548 (49%), Gaps = 52/548 (9%) Query: 23 PPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDA 82 PPL + L+A RG+ A + L + +A + A R G RI + GD+DA Sbjct: 35 PPLAQVLHA-RGLTPAH-----LDAPLRLTPNPALREAARRIVGAIRAGRRIRIHGDYDA 88 Query: 83 DGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISS 142 DG ++TA +L +R +G + + +P+R +GYGL P+ V++ HA L+VTVD G+++ Sbjct: 89 DGVSATATLILGLREVG-AEVHGFIPHRLNEGYGLHPDRVEE-HAAACDLLVTVDCGVTN 146 Query: 143 HAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPS-KSLAGVGVAFYLMLA 201 V + G+ VIVTDHH PG P +++P+ P +L G GVA++L+ Sbjct: 147 LEEVRALLARGLDVIVTDHHAPGPDYPDC-LVVHPHRTTGYDPELHNLTGAGVAYHLL-- 203 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 261 W + +P EL L LGT+ADV PL NR L G+ + A Sbjct: 204 ---------WAVHEELGLPAPLELAGLATLGTIADVAPLIGENRALVRAGLDAL-ATSTL 253 Query: 262 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 321 PG++ALL + ++ + D+ F L P +NAAGRL + + + LL + EAR LA Sbjct: 254 PGVRALLNA--KRVERPSVRDVAFLLAPLVNAAGRLGEADLALQLLTTTSDHEARTLATY 311 Query: 322 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 381 L++ NQ R+ ++ M EAL L + E + + + P+WH GV+GI+AS++ E F Sbjct: 312 LESRNQERRVLQDRMYEEALGLADPEEPA-------IVVTKPDWHAGVMGIVASKLVETF 364 Query: 382 HRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDK 441 H+PV A KGS RS G+ + L L + ++GGH AAG +L+E Sbjct: 365 HKPVYIVAQG-----KGSVRSTPGISAVEGLRYSHDL----LKRYGGHPGAAGFALDEAN 415 Query: 442 FKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD 501 F+ + R V ++ P + D PL T E+ + P+G P PL+ Sbjct: 416 FEALRDRLHTYVRQFPRPVPMW---RLDAPLPTRAATPELVRQAAAFEPYGTGHPPPLWH 472 Query: 502 GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEF 561 L RLVG+R + + +GG L GI A+ G R+ LA L E+ Sbjct: 473 MREVLSSTRLVGKRGDSLQFQ-IGG---LRGIQHGERDAV---PGERD--LATHLVRGEW 523 Query: 562 RGNRSLQI 569 RG L++ Sbjct: 524 RGQTRLEL 531 >UniRef50_Q7VGH0 Single-stranded DNA-specific exonuclease n=1 Tax=Helicobacter hepaticus RepID=Q7VGH0_HELHP Length = 522 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 148/490 (30%), Positives = 259/490 (52%), Gaps = 46/490 (9%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L+G +K VE + +G I+VVGD+DADG ++AL LG ++P+RF D Sbjct: 38 LTGAQKVVECM----NKGQEILVVGDYDADGICASALMCRFFERLGYEKFRLVIPHRFID 93 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG+S ++++ +A A ++V+VDNGI++ + + I I+TDHH P +TLP A+ Sbjct: 94 GYGVSAALLEK-YANNASIVVSVDNGINAFCAGDWCKEHNIVFIITDHHTPANTLPQADV 152 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 II+P + DC+F KS+ G VA+Y A++ L A ++ E L+ +AL + Sbjct: 153 IIDPYMADCSFIQKSICGAVVAWYFCAAIKQILG----------ASIDMGEFLEYLALAS 202 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +AD++PL NRIL +G+ R+R L + + + A +L F++ P LN Sbjct: 203 IADIMPLVGINRILVKKGIERLRNSS-----SPLALLIRSKLKTINAENLAFSIVPLLNC 257 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGR+ + ++ + LL ++ +A + ++L LN RK + Q E L+L + + Sbjct: 258 AGRMANANLALDFLLAPSVVDALRIYDKLFELNVQRKSV----QSEILSLAQMPNIESEH 313 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 + + Y +WH+GV+GI+AS + + + + + +G LKGSGRS GL++ ++ Sbjct: 314 I---IVSYGEDWHEGVLGIVASSLAQEKGKSAFVLSYS-NGILKGSGRSFGGLNLIASIT 369 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD---G 470 L +L+FGGH+ A G+SLE ++ + F L+ +L+ ++ + G Sbjct: 370 PLSK----HLLRFGGHSGAVGISLELEQLEGF--------INALESALIFDDIKENAILG 417 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLF---DGHFRLLQQRLVGERHLKVMVEPVGGG 527 + A + E+ + P+G+ P+P+F + + L+ ++HL ++ G Sbjct: 418 VIESASINEELLAICERFEPFGEGNPKPIFLCENLQIQSLKPLGRDKKHLSYILNDKSNG 477 Query: 528 PLLDGIAFNV 537 LL+ I F V Sbjct: 478 VLLEAIEFFV 487 >UniRef50_Q31G80 Exonuclease RecJ n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31G80_THICR Length = 597 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 175/566 (30%), Positives = 281/566 (49%), Gaps = 59/566 (10%) Query: 39 QELERSVKGMLPW----QQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLA 94 +EL++ V L + +QL ++A E++ +A +I++ D+D DG TS ++ A Sbjct: 52 EELQKIVFPKLQYLQHPEQLKNAKQAAELIADAVESDGKIVLATDYDTDGVTSAWVATRA 111 Query: 95 MRSLGCSNIDY--LVPNRFE-------DGYGLSPEVVDQAHA-RGA-QLIVTVDNGISSH 143 + IDY + P R E +GYG++ EVV++ A +G+ L+++ D G S Sbjct: 112 L-------IDYFGVSPERIEHMIGERKEGYGITEEVVNRILAIKGSIDLVISADQGSSDE 164 Query: 144 AGVEHARSLGIPVIVTDHH--LPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLA 201 ++ GI V VTDHH P+A +NP C++ K++AG V F +M Sbjct: 165 PRIKRLADAGIKVCVTDHHQMTTEGAPPSAACTVNPQQAGCDY-DKTVAGCFVIFLVMGQ 223 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA-NNRILTWQGMSRIRAGKC 260 RT L + E P+L +L +ALGTVAD V L + NNR + G++ I Sbjct: 224 TRTELIRRQVIPE---TTPSLKDLTQNIALGTVADSVSLKSVNNRAIVQAGLAAINQF-S 279 Query: 261 RPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLAN 320 P +AL ++ + Q A LGF + R+NAA R+ D++ L ++ +A L Sbjct: 280 HPAWQALQKMNDNQGQPFNAEYLGFQVATRINAASRVSDVTTAFKFLNASSLEQATPLLA 339 Query: 321 ELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEW---------HQGVVG 371 +LD N R+ ++GM L+++R+T A+YH + G+ G Sbjct: 340 QLDQDNLDRRSQQEGM----------LKQARET---AEALYHENKFTLSIRMTGNAGIQG 386 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSI-QGLHMRDALERLDTLYPGMMLKFGGHA 430 I+ASRI E++ P IA DG L GSGR I + +R+A + + +PG+ GGH Sbjct: 387 IIASRIGEQYGVPTIAMTDLEDGYLAGSGRGIVSNIDLREAFQTMAERHPGLFKSMGGHK 446 Query: 431 MAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGP 490 AAG + +KF +F F E + E L+ ++ + +DG L+ ++T + Q L P Sbjct: 447 GAAGCMIPIEKFDIFSTLFEETIQEQLNHTVPIPTIETDGRLTGRQLTPSLIQELNLLEP 506 Query: 491 WGQMFPEPLFDGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVD-TALWPDNGV 547 +G+ +P+PLF G F + R VG+ HL + ++ I FN TA PD Sbjct: 507 YGREWPKPLFSGVFEIQDLRPVGQTKTHLSFKLRS-DDRQIISAIFFNAKPTAEAPDGFS 565 Query: 548 --REVQLAYKLDINEFRGNRSLQIII 571 +V+ AY+ +N F G SLQ+ + Sbjct: 566 IGEKVECAYQPSLNTFYGKTSLQLKV 591 >UniRef50_A6G9W0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G9W0_9DELT Length = 602 Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 162/528 (30%), Positives = 259/528 (49%), Gaps = 21/528 (3%) Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 Q++G +AVE+L +A + R+ + GD+D DG T+T + + LG + + E Sbjct: 88 QMAGYAEAVELLVDAQQRKLRVGMFGDYDVDGVTTTTILTTFLECLGVEIVAKVASR--E 145 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 GYG + +++T D G S H + + GIP +V DHH +T+P A Sbjct: 146 GGYGFGVDAAKALQESRVDMVLTGDCGTSDHEALAWLEAKGIPSVVIDHHQVPETMPPAT 205 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A++NP+ C FP K L GV FYL +R+ L + ++ +P+ LDLVALG Sbjct: 206 ALLNPHQDGCGFPFKGLCSAGVGFYLAAGVRSKLAAKSPGSRKS--LPDPRAWLDLVALG 263 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ-KLAASDLGFALGPRL 291 TV D++PL +NRIL G+ + + RPG++ LL+ A D + + LGF LGPRL Sbjct: 264 TVCDMMPLVGDNRILVRHGLE-VMDQRRRPGVRELLKRARVDPRTHIDEGHLGFGLGPRL 322 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NA GRL + LL + EA L ++ N+ R++++Q + EA+ L S Sbjct: 323 NAPGRLGSAEPSLDLLRARSSAEAEALGARVEMFNERRRDMQQRIVAEAMALLAADPASP 382 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRP--VIAFAPAGDGTLKGSGRSIQGLHMR 409 G+ + W G+VGI A+ I ER+ RP VI P G G +GS R+ G+ +R Sbjct: 383 RRR--GIVVAREAWAPGIVGIAAAGIVERYQRPTLVIGIDP-GSGEARGSARTAGGVDVR 439 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV-VS 468 AL L + +FGGH AAG+S+ D ++ F E + + + Sbjct: 440 AALAECRHL----LRRFGGHKAAAGVSMPADNIDALKEAFDAACAEQMGEEADREPIDFH 495 Query: 469 DGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGG 527 DG L+ ++ + + + GP+G F P + +++ +++ HL + ++ G Sbjct: 496 DGELALDDIDLRLISHIESLGPFGVGFARPRYLCAGAEVVRIKVLKGSHLALTLKQ--GK 553 Query: 528 PLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 D IAF P V L Y + N +RG+ Q+I++ +W Sbjct: 554 AHRDAIAFRKGN--LPIAKGDRVGLLYTPERNSYRGHDRAQLIVERLW 599 >UniRef50_Q7VBV8 Single-stranded DNA-specific exonuclease n=1 Tax=Prochlorococcus marinus RepID=Q7VBV8_PROMA Length = 626 Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 144/485 (29%), Positives = 256/485 (52%), Gaps = 29/485 (5%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSG---VEKAVEILYNAFREGTRIIVVG 78 L +++ + RG +S +++ ++ P L + A E + +A + I + G Sbjct: 22 LGTIIKEILYRRGFQSKSDIQNFIEPSKPPNALFHFPFLNIASERVISAIKNHEEIAICG 81 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+DADG TSTAL + + L I L+P+R +DGYGL+ ++D+ A L++TVDN Sbjct: 82 DYDADGMTSTALLIDVLTKLNAKPIP-LIPSRQDDGYGLNKAIIDKIVALNINLLITVDN 140 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 G+S+ +++A+SLGI VIVTDHH L A A+I+P P +S+AGVGV + L Sbjct: 141 GVSAIEELKYAKSLGIDVIVTDHHKINHQLNDAFALIHPETTPEKSPYRSIAGVGVTYIL 200 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 + L + I NL++ DL+ +GT+AD+ L+ NR + +++ Sbjct: 201 AEDIAKKLNKE--------EILNLSK--DLLCIGTIADMSKLEGANRYWLKHWIYKLKDS 250 Query: 259 KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVL 318 G++A+ + + + ++ +D+ F + PR+N+ GR+DD + + LL+ + + + Sbjct: 251 -TSLGLQAIYKNSKLNNLQIKTNDISFKIAPRINSIGRIDDPKLILDLLIEKDQSKVDHM 309 Query: 319 ANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIK 378 AN + +N+ RK++ ++ EAL + EK + D+ + + W+ GV+GI+ASRI Sbjct: 310 ANRCEEINRLRKKLCLIVEKEALNILEKKDAQIDSF---ILLAQGHWNHGVIGIVASRIM 366 Query: 379 ERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLE 438 ++ RP + G+G L+ S RS + H+ +AL + L + K+GGHA AAG +++ Sbjct: 367 NKYLRPTAILSSEGEGLLRASVRSPKNFHVTEALGKCSDL----LEKYGGHAAAAGFTVK 422 Query: 439 EDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP---LSPAEMTMEVAQLLRDAGPWGQMF 495 +++ + WL Q EV P + +++ E+ L+ P+G Sbjct: 423 ASNLMALEKKLNSIAETWLS----QNEVAKISPEARIDFSQINDELLGDLKKLEPFGIGN 478 Query: 496 PEPLF 500 +PLF Sbjct: 479 QKPLF 483 >UniRef50_A8UQI8 Single-strand-DNA-specific exonuclease RecJ n=2 Tax=Aquificaceae RepID=A8UQI8_9AQUI Length = 547 Score = 221 bits (562), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 162/488 (33%), Positives = 270/488 (55%), Gaps = 47/488 (9%) Query: 25 LLRRLYASRGVRSAQE--LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDA 82 LL +L +RG + E E +K +LP+ L VE+ +E + + R G RII+ GD+D Sbjct: 29 LLAQLIVNRGYEDSHEELFELKLKYLLPYNLLPNVEEGIERIVESVRRGERIIIFGDYDV 88 Query: 83 DGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISS 142 DG T TA+ +R+ G S + ++PNR GYGL+ ++ + +R A+L++TVDNG S+ Sbjct: 89 DGITGTAILYEVLRAAG-SKVTPVLPNR-GTGYGLNRRLI-EVFSRYAELLITVDNGTSA 145 Query: 143 HAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPS--KSLAGVGVAFYLML 200 + ++++ G+ V+V DHH + +P +INP L + P K L+ + FY+ Sbjct: 146 VSEIDNS---GMDVVVIDHHNVPEEVPRRAVLINPKLSN-GVPKDMKELSSSAMCFYMAA 201 Query: 201 ALRTFLRDQGW-FDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR---IR 256 L +R G D R LLDL A+GTV DV+P++ NRIL +G+S I Sbjct: 202 VL---VRRLGLDMDVRT--------LLDLAAMGTVGDVMPMNRTNRILVSKGLSLLEGIA 250 Query: 257 AGKC-RPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 +G +PG++ALL VA R ++++A D+ +++ PR+NA GR+ + + + LL + A Sbjct: 251 SGAVDKPGVRALLRVA-RVGERISAKDIAYSIAPRINAPGRVSNPKLSLELLTEKDPKRA 309 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 +LA ++++LN R+ I + EA + +E S ++++ WH GV+GI+A Sbjct: 310 ELLARKIESLNIKRRAITDNVYREAYR--KVMESSSRNF---ISVWSEGWHVGVLGIVAG 364 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 R+ + +PV F+ + ++ GS RS++G+ + + L +L M LK+GGH AAGL Sbjct: 365 RLSSQMGKPVAVFSRGANHSV-GSVRSVEGIDVYEGLSKLSH----MFLKWGGHMQAAGL 419 Query: 436 SLEEDKFKLFQQRFGEL---VTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWG 492 +LE + F + EL V + L P + E+ PLS +T +V + + P+G Sbjct: 420 TLESRLLEAFSEEVDELFSHVPKELPPLYIDMEL----PLSG--VTPDVLRSVSRLEPFG 473 Query: 493 QMFPEPLF 500 + P P+F Sbjct: 474 EKNPVPVF 481 >UniRef50_A2C286 DHH family:DHHA1 domain:Single-stranded-DNA-specific exonuclease n=2 Tax=Prochlorococcus marinus RepID=A2C286_PROM1 Length = 629 Score = 217 bits (553), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 151/526 (28%), Positives = 266/526 (50%), Gaps = 25/526 (4%) Query: 50 PWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPN 109 P + + KA + + NA + +I + GD+DADG TST L V + LG + +P+ Sbjct: 58 PEEHFDELSKATQRIINACLKKEKIAICGDYDADGITSTVLLVELLSILGAI-VKPFIPS 116 Query: 110 RFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLP 169 R ++GYGL+ +++ + +G +L++TVDNGIS+ A ++ + LGI +I+TDHH D Sbjct: 117 RQDEGYGLNENMINNINNQGIKLVITVDNGISAFAAIKKSVDLGIDLIITDHHKIPDKKL 176 Query: 170 AAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLV 229 ++I+P N P K LAGVG+A+ L + + +D N + N+ Sbjct: 177 NIFSLIHPEKTPINSPYKYLAGVGIAYLLAKNICEKID----YDINN-STANI-----FF 226 Query: 230 ALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGP 289 +GT+AD+ PL NR + + +I + + GIK++++ + + + D+GF + P Sbjct: 227 CIGTIADMAPLKGANRKWLKECLPKINSTTNK-GIKSIMKKLSIHNVDITSDDIGFKIAP 285 Query: 290 RLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLER 349 +NA GR+ D ++ + L + L N+ +N+ RK + ++ EAL + R Sbjct: 286 LINAVGRIGDPNLIIDLFTNKSNDSVVKLTNDCFNMNRERKRLTSLVEQEALEIAVSEYR 345 Query: 350 SRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMR 409 S L + EWH G++GI+A+RI E+F+ P A A DG +GS RS L + Sbjct: 346 SDRKF---LVLTKREWHPGIIGIVAARIAEKFNLPTALLAQANDGNFRGSIRSNNKLMVN 402 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 AL D L ++ GGH+ AAG S++ + +++ ++ L + D Sbjct: 403 QALAECDDL----LIAHGGHSAAAGFSIKNENIDKLREKLDQIANREFKDINLYKSITPD 458 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGP 528 +S ++ + L GP+G M P P+F ++L + HLK+ + G Sbjct: 459 AFISFDQINYNFYRQLTLIGPFGIMNPTPIFWARKCKILDIYKLKGDHLKMTLN--DGTS 516 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 ++ I +N T L + + +A+ ++IN ++ +LQ+ I +I Sbjct: 517 TIEAIKWNGSTELKKQD---LIDIAFYIEINRWKKLNTLQLNILDI 559 >UniRef50_P73518 Single-strand-DNA-specific exonuclease; RecJ n=1 Tax=Synechocystis sp. PCC 6803 RepID=P73518_SYNY3 Length = 759 Score = 217 bits (553), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 170/515 (33%), Positives = 258/515 (50%), Gaps = 52/515 (10%) Query: 28 RLYASRGVRSAQEL-----ERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDA 82 +L RG++SA +L PW+ ++ AV+ L A + ++ + GDFDA Sbjct: 36 QLLWQRGIQSADQLGGFLSPDCYTPTSPWEFGQEMKWAVQRLGQAMAQKEKVTIWGDFDA 95 Query: 83 DGATSTAL--SVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 DG TSTA+ L S + Y +PNR + +GL+ +++ +G +LIVT D G Sbjct: 96 DGITSTAVLWEGLGQFFPQDSQLTYTIPNRLRESHGLNRPGLERLATQGTKLIVTCDTGS 155 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 ++ + +A+ LG+ VIVTDHH D P AIINP P +L+GV VAF L+ Sbjct: 156 TNLDEIVYAQQLGMDVIVTDHHTLPDDRPEVVAIINPRYFADGHPLFNLSGVAVAFKLVE 215 Query: 201 ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK- 259 AL + + L +LLDLVA+G +AD+V L + R L +G++++R K Sbjct: 216 AL--------YNQYPTVPQQPLEDLLDLVAIGLIADLVTLQGDCRYLAQRGIAQLRTQKD 267 Query: 260 ----CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD-DMSVGVALLLCDNIGE 314 RPGI ALL + NR+ + +D+GF +GPR+NA R+ D S GV LL + Sbjct: 268 PATATRPGIHALLNLCNRNGDR--PTDIGFGIGPRINAISRIKGDASFGVELLTSRDTKV 325 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILA 374 LA E + LN RK +++ + IE + ++L+ + G + + P+W GV+G+ A Sbjct: 326 CNQLAAEAETLNSRRKGLQKSVIIE---IDQRLQNIDLSTTGVVVLTDPQWPTGVLGLAA 382 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 S + + RP I KGS RS+ + + L L ML FGGH AAG Sbjct: 383 SHVAQTCGRPAILLNTQDGKIAKGSARSVANIDLYALLHSQRHL----MLGFGGHPFAAG 438 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQ--GEVVSDGPLSPAEMTMEVAQLLRDAGPWG 492 LSL DK LF TE ++ Q G +S P+ ++ ++VA L +D Sbjct: 439 LSLPLDKLPLF--------TEAVNQQFWQSYGAQISLDPILAVDLQVKVADLGQD----- 485 Query: 493 QMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGG 527 +F E F LL+ +G K+++E V G Sbjct: 486 -LFRE------FNLLEPYGMGNPAPKLLLENVQVG 513 >UniRef50_A3VNM8 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Alphaproteobacteria RepID=A3VNM8_9PROT Length = 610 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 195/571 (34%), Positives = 289/571 (50%), Gaps = 32/571 (5%) Query: 21 ELPPLLRRLYASRGVR---SAQELERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIV 76 ++ PLL + A+R V +A L ++ LP L G++ A L +A G I + Sbjct: 47 DIDPLLSEVVAARQVTPDLAAAWLSPRLRDDLPDPSCLKGMDTAAARLADAIIAGETIGL 106 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GDFD DG TS+A+ +R++G + + +L PNR +GYG + +GA LIVT+ Sbjct: 107 FGDFDVDGTTSSAIMARYLRAVGAAPLIHL-PNRQSEGYGPNLPAFLAMKEKGASLIVTL 165 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D G ++H + A G+ VIV DHHL P A A++NPN DC L+ GV F Sbjct: 166 DCGATAHGVLAAAAEEGLEVIVVDHHLMSLPAPTAVAVVNPNRPDCLSGLTMLSAGGVTF 225 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI- 255 ++AL LR++G+F +R +L LLDLVAL V DV+PL R LT QG++ + Sbjct: 226 LTLVALNRTLRERGFFADRPPP--DLLRLLDLVALSLVCDVMPLKGLGRTLTRQGLALLG 283 Query: 256 ---RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNI 312 AG GI+AL A AA+ G+A+GPR+NAAGR+ LL D+ Sbjct: 284 HIEGAGSGNQGIRALAAEAGA-KGPAAAAHFGYAIGPRINAAGRIGHAMTAFDLLTTDDP 342 Query: 313 GEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGI 372 +A LA EL LN R+ +E + EA E LP L + WH GV+GI Sbjct: 343 VKAAALAAELSDLNGIRQGVEAAVLEEACKAAEDQGDRDAPLP--LVVAGEGWHPGVIGI 400 Query: 373 LASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMA 432 +A R+KERF RP + + AG+ KGSGRS+ G+ + A+ + G++L GGH MA Sbjct: 401 VAGRLKERFGRPALVISLAGE-EGKGSGRSLPGVDLGAAIGA--AVEAGLLLGGGGHPMA 457 Query: 433 AGLSLEEDKF----KLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 AGL++ D R GE + +L DG ++P +T + L A Sbjct: 458 AGLTVRRDGLGELRAFLDARLGEAIAAAQADRVLS----LDGIVAPTGITRSLHDGLLQA 513 Query: 489 GPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN-----VDTALW 542 P+G PEP F + + R++ ++H+ V + GG GIAF + L Sbjct: 514 APFGNGNPEPRFALADISVRELRVLKDKHMAVTLADDTGG-RARGIAFGCVGQPLGDLLE 572 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 + + LA ++ +E+RG + QI +++ Sbjct: 573 AGRAGQRLHLAGRIKPDEYRGGNAAQIHLED 603 >UniRef50_Q0F3M9 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3M9_9PROT Length = 565 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 174/529 (32%), Positives = 263/529 (49%), Gaps = 38/529 (7%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 + ++KA L A G I + GDFDADG TA+ V A+R+ G + + + +P+R +D Sbjct: 61 MKDMDKAATRLARAIGNGEAIHIFGDFDADGVNGTAILVEALRAAGAT-VTFSIPHRADD 119 Query: 114 GYGLSPEVVDQAHARGA-QLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 G+G+ E V Q A A ++ ++VD G + + A LG +I++DHHLP TLPAA Sbjct: 120 GHGVGVESVRQVVAESACRMGLSVDTGTTCFDACDEAARLGFDLIISDHHLPEATLPAAF 179 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A++NP DC F ++L G GVAF+L++A+ L DQG N +L LLD VA+ Sbjct: 180 ALLNPARSDCGFAERALCGTGVAFFLLMAVWKKLTDQG-----NRPAYDLRALLDRVAVA 234 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 292 TVADV+ L NRIL G+ R+ + G+ AL++VA R + + A +GF L PR+N Sbjct: 235 TVADVMDLVGVNRILVAHGLQRLNSAPS-IGMAALMQVA-RVNKTVTAETIGFHLAPRIN 292 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 AAGR+ + LL + GEA LA +LD N+ R+++E +E E+ D Sbjct: 293 AAGRMQHGEAAMRLLSTSDAGEALRLAEQLDETNKQRRKVE----VEVFKQAEEKLADTD 348 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 LA+Y WH GVVG+ A R+ + RP +G ++ S R + G H+ AL Sbjct: 349 V----LAVYDERWHAGVVGLAAGRLARKHGRPAAVGFVTPEGDIRVSLRGMNGFHI-GAL 403 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 + + G + F E + L+Q DG L Sbjct: 404 LNDCSDHLAGFGGHAGAGGGTITAGNWAAFHAAFAAAVARQAEGVSDHLVQ---QVDGVL 460 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGE-RHLK---VMVEPVGGGP 528 M +A+ L P+G+ P L+ LL+ + E R+LK V ++ G Sbjct: 461 EAGAMHFGLAERLARFEPFGRANPPSLW-----LLRDIQIAERRNLKGNVVRLKLTDGSR 515 Query: 529 LLDGIAFNVDTALWPDNGVRE----VQLAYKLDINEFRGNRSLQIIIDN 573 LDGI F NGV E V L +L +++RG +++Q +I++ Sbjct: 516 WLDGIVFGAGAM----NGVIEQGMTVSLIGQLQKDDYRGGQAIQFVIED 560 >UniRef50_C3WCG5 Single-stranded-DNA-specific exonuclease recJ n=16 Tax=Fusobacterium RepID=C3WCG5_FUSMR Length = 573 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 143/512 (27%), Positives = 265/512 (51%), Gaps = 32/512 (6%) Query: 70 EGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARG 129 + +I + GD+D DG T+ V +G ++DY +PNR E+GYGL + +D R Sbjct: 75 KNEKIFIYGDYDVDGITAAVFLVKVFSEIGI-DVDYYIPNRMEEGYGLDKKAIDFMKKRN 133 Query: 130 AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE-AIINPNLRDCNFPSKS 188 +L++TVD G++S V++A SLGI VIVTDHH E ++NP L D + K Sbjct: 134 CKLVITVDTGVNSIEDVKYAESLGIEVIVTDHHKSTKDKEDEELLLLNPKLSDT-YEFKY 192 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 L+G GVA L +A QG +++ N + L + +D+V +GTVADVVP+ NRI+ Sbjct: 193 LSGAGVA--LKVA-------QGVYEKLNADMGKLYQYMDIVMIGTVADVVPMVDENRIII 243 Query: 249 WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 308 +G+ + K + G+ LL+ +++ +D+ + + P +N+ GR+ +G L Sbjct: 244 KEGLKILSKTKVK-GLMYLLKYLKFQNKEINTTDVSYFISPLINSLGRIGVSKMGADFFL 302 Query: 309 CDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQG 368 ++ E + E+ N+ R+E+E+ + EA +K+++ +L +Y +WH G Sbjct: 303 KNDEFEIYNIIEEMKKSNKKRRELEKAIYEEADHKIKKMDKK--SLKCAF-LYSKKWHPG 359 Query: 369 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGG 428 V+G+++SR+ +++ P IA D K S RS++G+ + + + +++FGG Sbjct: 360 VIGVVSSRLSVKYNMP-IALVALRDNIGKASCRSVKGVSVFNIFHTM----KDKLVRFGG 414 Query: 429 HAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV--SDGPLSPAEMTMEVAQLLR 486 H +A+G ++++ K ++ F E + E + Q E + D L ++ + + + Sbjct: 415 HDLASGFIVKQENLKEVERIFKENIDEI---KVEQEEKILKIDMELPIEKIDENLFKAME 471 Query: 487 DAGPWGQMFPEPLF---DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWP 543 P+G PLF D F +++ V ERH +++ G + +AF++ + Sbjct: 472 SLAPFGLDNNHPLFIDKDLSFDYIKKFGVNERHFNGIIKKNGKNYHM--VAFDMGHKINE 529 Query: 544 -DNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + +++ + Y + ++G +QI I +I Sbjct: 530 LEAKIQKFDIVYYPEKVIYKGEEIIQIRIKDI 561 >UniRef50_C3XJZ6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XJZ6_9HELI Length = 533 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 160/553 (28%), Positives = 281/553 (50%), Gaps = 49/553 (8%) Query: 21 ELPPLLRRLYASRGVRSAQELER--SVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVG 78 E+ LL++ + ++S ++L + +K +L +++G K A RI+VVG Sbjct: 20 EVESLLKQRFDKEEIKSLKDLPKPEKLKNLL---EIAGRIKL------AIDTKKRIVVVG 70 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DG S A+ + L I +PNRF DGYGLS V+ + +I+TVDN Sbjct: 71 DYDVDGVVSCAILHAFFKKLQ-YPILVEIPNRFSDGYGLSKSVISRL---DCDVIITVDN 126 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 GI++ E ++ GI +++TDHH P + LP A I NP L +FP + G VA+YL Sbjct: 127 GINAIEAAEICKNRGIELLITDHHTPQEILPNA-LICNPKLSK-DFPEPEICGACVAWYL 184 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 AL+ + I + + + LDL+AL V+DV+PL NR+L +G+ +++ Sbjct: 185 CAALKQVM---------GIDVA-MGDFLDLLALAIVSDVMPLLGMNRVLLKKGLEVLKSS 234 Query: 259 KCRPGIKALLEVANRDAQ-KLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 + A + + R + K+ + + + P LN AGR+D + L+ ++ +++ Sbjct: 235 Q----RTAFIHLKERFCKYKIDGQLISYYIAPLLNCAGRMDSAMLAYRFLITEDKVDSKK 290 Query: 318 LANELDALNQTRKEIEQGMQIEAL-TLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 L +L ++N RKE++ + EA + C+ +++ LP L +Y P WH+G+VGI+A+R Sbjct: 291 LLEKLLSINTERKELQNIIYTEAKESFCK--QKNYQKLPVIL-VYSPSWHEGIVGIIAAR 347 Query: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 + E F +P I + +G LKGS RS D +E L++ ++ FGGH AAGLS Sbjct: 348 LSEEFCKPCIVLS-QKNGILKGSMRS----SYTDCMEVLESTREHLV-AFGGHFGAAGLS 401 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 L+++ + F++ + + + + G L + + E +++ P+G Sbjct: 402 LKKESLEAFKKAL--MCFNYKQERMESNFSEALGYLPLSVVGKEFFAMIQSFEPFGCANA 459 Query: 497 EPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKL 556 P F +++ R GE+H +++++ G + + FN D D RE+ Y L Sbjct: 460 IPKFYTKAKIVNVRYFGEKHSRIILKE--GITKCEAVVFNKDLREAQD---REIACLYYL 514 Query: 557 DINEFRGNRSLQI 569 + +R + L + Sbjct: 515 QWDNYRQDVVLHL 527 >UniRef50_C2KX60 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Oribacterium sinus F0268 RepID=C2KX60_9FIRM Length = 571 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 161/568 (28%), Positives = 287/568 (50%), Gaps = 36/568 (6%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGM-LPWQQ-LSGVEKAVEILYNAFREGTRIIVVGD 79 L P+L R+ +R + + +E+ ++G +P L + + L A +EG ++ +VGD Sbjct: 22 LDPVLVRILRNRDLTTEEEMRNFLEGEEIPSPLFLPDSIRFLNRLERAMKEGEKVRIVGD 81 Query: 80 FDADGATSTALSVLAMR-SLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 +D DG ++ + A+ + ++P+R DGYG++ +++++A A G L++T DN Sbjct: 82 YDVDGVCASTILAKALSLFFSKEQLSVVIPHRILDGYGINEQIIEEAKAEGISLLITCDN 141 Query: 139 GISSHAGVEHARSLGIPVIVTDHH-LPGDT-----LPAAEAIINPNLRDCNFPSKSLAGV 192 GIS+ + +E A+S G+ V++TDHH L D +P A A++NP +P++ + G Sbjct: 142 GISAFSAMEKAKSYGMDVLLTDHHDLRRDEDGKKRIPEAFAVVNPKREGSKYPNEEICGA 201 Query: 193 GVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGM 252 V + LM L ++R + L EL + TV DV+PL NR++ + Sbjct: 202 MVCYLLMKML---------LEKRQKGLELLEELACFAGIATVCDVMPLQKENRVIVKYCL 252 Query: 253 SRIRAGKCRPGIKALLEVAN-RDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 + ++ + G++ALL+ + Q++++ LGF +GP +NA GRL+ + ++L L ++ Sbjct: 253 THLQKTQ-NIGMQALLKQCHILPEQEISSYTLGFQIGPCINAGGRLESAMLALSLFLEED 311 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVG 371 G+A A L LN+ RKE+ + EA L E+ +P L + P+ H+ + G Sbjct: 312 EGKAEEKAAHLLVLNEERKEMTKKGVDEAKALAEQ----EGDVP-LLFLVLPDLHESLAG 366 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 I+A RI+E ++RP DG+ K SGRSI G M + LE L +L+FGGH M Sbjct: 367 IVAGRIREAYYRPCFILTNGEDGSCKASGRSIPGYPMAERLEEQKEL----LLRFGGHPM 422 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 AAG S+ ++ ++ L L L+ +V D L + + + + L P+ Sbjct: 423 AAGFSVTKENVPGLKKAL--LQNARLQAEDLEEKVWIDVVLPFSYLKEDFVRSLSRLEPF 480 Query: 492 GQMFPEPLFDGHFRLLQQ-RLVGERH--LKVMVEPVGGGPLLDGIAFNVDTALWPDNGVR 548 G+ +P F LL+ ++VG+ +K+ +E G ++G+ F R Sbjct: 481 GRGNEKPAFAQKNVLLKDFKIVGKNKNAIKLYLED-EQGTRVEGVLFEDGEKFLNKKSSR 539 Query: 549 -EVQLAYKLDINEFRGNRSLQIIIDNIW 575 + L Y I + + LQ+++ + Sbjct: 540 NKFNLLYYPKIQVYNNIKQLQVVVSEYF 567 >UniRef50_D0GIS6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GIS6_9FUSO Length = 568 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 156/566 (27%), Positives = 274/566 (48%), Gaps = 48/566 (8%) Query: 25 LLRRLYASRGVRSAQELER----SVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 L+ RL +RG+ S +E+E+ S +L + +++ E + A + ++I+ GD+ Sbjct: 25 LITRLLLNRGISSKEEVEKFLNSSENDLLSPFLIENMDEVTERILKAKKNREKVIIYGDY 84 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 D DG ++ A V+ R LG N+DY +PNR +G G++ ++ R A L +TVD I Sbjct: 85 DVDGISAAAYLVIVFRKLGM-NVDYYIPNRAHEGVGINSNLIKYLIKRNAGLFITVDTNI 143 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA-IINPNLRDCNFPSKSLAGVGVAFYLM 199 S+ V + I +I+TDHH + + INP + + N+P+K+L+G GVAF L Sbjct: 144 GSYEEVMMLKRNNIDIIITDHHRQTEEIKNFNIPTINPKIGN-NYPNKNLSGSGVAFKLA 202 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 A+ +++ + L + LD+V +GTVADVVP+ NR + +G+ +R K Sbjct: 203 DAV---------YEKCGVNKKILYDYLDIVMIGTVADVVPMTDENRFIIKKGLYNLRKTK 253 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 + G+K +L + + SD+GF + P NA GR+D+ + V + ++ + + Sbjct: 254 IK-GMKYILNYLRINPNNITTSDVGFYIAPIFNALGRIDNSKMVVEFFIEEDDFKLFSII 312 Query: 320 NELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKE 379 E+ N+ R+ +E + E ++L + P + M +WH GV+G++ SRI Sbjct: 313 EEMKKANKIRRYLEIEIYNEIEEKIQRLNK-----PKYIFMKSRKWHSGVIGVVCSRISI 367 Query: 380 RFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEE 439 +++ PVI +G K S RSI+GL++ D L+ + +FGGH +AAG + E Sbjct: 368 KYNIPVI-LVSIKNGYGKASCRSIEGLNIFDMLKETSDKFE----RFGGHDLAAGFLVSE 422 Query: 440 DKFKLFQQRFGE-LVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEP 498 K + + LVT + S ++ + D L+ ++ + P+G EP Sbjct: 423 KYLKEIEIYLKKRLVTA--NKSNIEKVLYIDSVLNIEQINKSKVLDINRLSPFGLDNQEP 480 Query: 499 LFDG---HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAY- 554 F F + V RH K ++ ++ I +N+ L N ++ ++ Y Sbjct: 481 NFVDKGIKFISFTKFGVNNRHFKGFIKK--NDRIISVIGYNLGHKLKFKNINKKYEIVYT 538 Query: 555 ------------KLDINEFRGNRSLQ 568 +L + +FR NR Q Sbjct: 539 PSFKSVRTDLFIELKLKDFRENRGGQ 564 >UniRef50_C5ZWW3 RecJ exonuclease n=2 Tax=Helicobacter RepID=C5ZWW3_9HELI Length = 526 Score = 211 bits (537), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 155/516 (30%), Positives = 268/516 (51%), Gaps = 36/516 (6%) Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L+ + + + + A +E +I VVGD+D DG S A+ + + S I ++PNRF D Sbjct: 41 LNNLPQIAKKIVQAIKEQKKIAVVGDYDVDGVVSCAILQDFFKRIPYS-ILVVIPNRFSD 99 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG+S +V++ +I+T DNGI++ E + GI +I+TDHH P + LP A Sbjct: 100 GYGISSALVEKI---DCDMIITADNGINAIEAAEVCKKKGIELIITDHHTPQEILPDA-L 155 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 I NP + NFP + G VA+YL A++ E N+ + ++ E LDL+AL Sbjct: 156 ICNPKISP-NFPESEICGACVAWYLCAAIK---------QEMNLKV-SMVEFLDLLALAI 204 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 V+DV+PL N +L +G+ + + R + L E + L A LG+ P LN Sbjct: 205 VSDVMPLRGMNWVLLKKGLEILGQNR-RVSLSLLRE--HFKKYPLNAQLLGYYFVPLLNC 261 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGR+ + L+ ++ A + EL LN+ RK ++ + +EA E + + Sbjct: 262 AGRIGSAELAYQFLIQNDSKAAYQILEELLELNRQRKAMQNQVFLEAKEDFMHQE-NFEA 320 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 LP + +Y+P W++GV+GI+A+++ E F +P I +G LKGS RS G+ + L Sbjct: 321 LP-FVVVYNPTWNEGVIGIVAAKLCEEFAKPSIVLT-NNEGKLKGSMRS-NGIDCVETLA 377 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + + + FGGH AAGL L ++ F++F++ + E +Q +V+ PL Sbjct: 378 K----HKEFLENFGGHFKAAGLGLLQENFEVFKEALMNM--EICSEQKIQNDVLGILPLQ 431 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 ++ +E+ ++L + P+G+ P F ++L +L G+ + K+++E G + + Sbjct: 432 --KINLEIFRILNEFEPYGEGNAMPKFATRAKVLSVKLFGDNNSKILLEQ--DGITKEAL 487 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQI 569 F+ + + + +E++L Y L + F N L+I Sbjct: 488 KFSENLQGYEN---QEIELIYSLQWDRFSSNVILKI 520 >UniRef50_B5YFK1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Dictyoglomus RepID=B5YFK1_DICT6 Length = 824 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 141/452 (31%), Positives = 242/452 (53%), Gaps = 38/452 (8%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIV 76 + PLL RL +RG++ + + +R + + P+ +EKA+ L ++++ Sbjct: 24 VSPLLARLLLNRGIKDSLQAKRFLNPKIEDLYDPFLYFPDLEKAMNFLVKLRDSKRKVLI 83 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARG--AQLIV 134 GD+D DG T+T + + + G ++ + +P+R E+GYGL + + +A ++ L++ Sbjct: 84 FGDYDVDGITATTIMYRVLSNWGW-DVSFYIPHRLEEGYGLKEKSIKKALSQNEFVSLLI 142 Query: 135 TVDNGISSHAGVEHARSLGIPVIVTDHHLPGD-TLPAAEAIINPNLRDCNFPSKSLAGVG 193 TVD GI S +E+ R G+ VIVTDHH+P + +P A + NP L N+P +AGVG Sbjct: 143 TVDCGIKSRKEIEYLRKNGVEVIVTDHHIPEEGNIPEALLVFNPYLN--NYPYPYMAGVG 200 Query: 194 VAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMS 253 VAF + AL F+ + ++E+ I L+LV LGT+ D++ L NRIL G+ Sbjct: 201 VAFKFLKALGDFI-GKDIYEEKGI--------LELVTLGTLGDLMELKDENRILVKFGLE 251 Query: 254 RIRAGKCRPGIKALLEVANRDAQKLAAS-DLGFALGPRLNAAGRLDDMSVGVALLLCDNI 312 + GIK L+ D + + D+ F + PR+N+ GR ++ + LLL DN+ Sbjct: 252 KFLNPDL-VGIKTLIRKVGLDKNTIINTKDVIFNITPRINSIGRFKEVEEAIRLLLTDNV 310 Query: 313 GEARVLANELDALNQTRK-EIEQGMQIEALTLC-EKLERSRDTLPGGLAMYHPEWHQ--- 367 EA +L +LD N+ R+ E+E+ +I L E++E ++ + +Y+P W + Sbjct: 311 EEAEILCEKLDEFNRKRREEVERVYEIAKEMLREEEIENNK-----AVFLYNPLWGRDVG 365 Query: 368 GVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 GV+GI+AS + E ++ P GD + SGR ++ +++ D + L + ++ FG Sbjct: 366 GVMGIVASMLVEEYNVPFFLGRKEGDFVV-FSGRGVEDVNLFDFISNLSS----YLVNFG 420 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTE-WLD 458 GH A G SL E +++F+ +L E W D Sbjct: 421 GHRGAVGFSLFEKDYEIFKINAIKLANELWKD 452 >UniRef50_Q2JMF8 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Synechococcus RepID=Q2JMF8_SYNJB Length = 758 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 149/445 (33%), Positives = 235/445 (52%), Gaps = 51/445 (11%) Query: 19 PAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQ-----------------LSGVEKAV 61 P + P L R Y + +++G+ W+Q L +E+AV Sbjct: 11 PPQFNPQLSREYGKYAAKVM-----ALRGLHTWEQAQAFVDPEHYSPTPPASLPDLERAV 65 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 L A + + GDFD DG TST+L + A++ LG + + +P R +G+GL+P+ Sbjct: 66 ARLLQAREREETLCIWGDFDCDGVTSTSLLLSALQPLGF-RVQFSIPLRSTEGHGLNPQR 124 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 + Q A+G Q+I+TVD G+ + A + A++ G+ VIVTDHH+ D LPAA A++NP Sbjct: 125 LQQVLAQGCQVILTVDCGVGNAAEIAMAQAQGVDVIVTDHHMLPDPLPAAYAVVNPLRLP 184 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 P + L GVGVA+ L AL L IP + + LDLVA+G VADV L Sbjct: 185 AEHPLRFLPGVGVAYKLAEALYQAL-----------GIPGVEQHLDLVAVGIVADVAVLQ 233 Query: 242 ANNRILTWQG---MSRIRAGKCRPGIKALL-EVANRDAQKL-AASDLGFALGPRLNAAGR 296 R L +G ++ + RPG++ALL V N +Q + A D+ F + P+LN GR Sbjct: 234 RECRYLVQRGLPVLASTQPSTQRPGLQALLARVDNGQSQGVPTAQDIAFRIAPKLNVIGR 293 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L+D S+ V LL + A+ L AL++ R+++ Q + EA E L+ +R+ G Sbjct: 294 LEDASLAVELLTTSDPERAQALVQRFVALDEERRQLTQQVIQEASQQVESLDLTRE---G 350 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAP---AGDGTLKGSGRSIQGLHMRDALE 413 + + W+ GV+GI A+ + E+++ P + A AG G GSGRS+ G+++ +A+E Sbjct: 351 AIVLAEAGWNPGVLGIAAAHLVEQYNCPTVLIAKDEAAGRGY--GSGRSLPGVNLVEAIE 408 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLE 438 + L + + GGH MAA + ++ Sbjct: 409 AVRPL----LRRGGGHPMAARIQVD 429 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P28355 Single-stranded-DNA-specific exonuclease recJ n=... 816 0.0 UniRef50_P39693 Single-stranded-DNA-specific exonuclease recJ n=... 759 0.0 UniRef50_Q2NRF9 Single-stranded-DNA-specific exonuclease n=4 Tax... 755 0.0 UniRef50_B4RXN3 Single-stranded-DNA-specific exonuclease RecJ n=... 689 0.0 UniRef50_Q5QYV7 Single-stranded DNA-specific exonuclease n=1 Tax... 687 0.0 UniRef50_A4J2G7 Single-stranded-DNA-specific exonuclease RecJ n=... 658 0.0 UniRef50_C6RPU9 Single-stranded-DNA-specific exonuclease RecJ n=... 656 0.0 UniRef50_O32044 Single-stranded-DNA-specific exonuclease recJ n=... 655 0.0 UniRef50_C0ZAP8 Putative uncharacterized protein n=1 Tax=Breviba... 651 0.0 UniRef50_UPI0000E0E6D4 single-stranded-DNA-specific exonuclease ... 650 0.0 UniRef50_UPI0001694BF0 YrvE n=1 Tax=Paenibacillus larvae subsp. ... 647 0.0 UniRef50_A6TQN7 Single-stranded-DNA-specific exonuclease RecJ n=... 644 0.0 UniRef50_B8CXF2 Single-stranded-DNA-specific exonuclease RecJ n=... 643 0.0 UniRef50_B0VNC7 SsDNA exonuclease, 5'--> 3' specific , Mg depend... 642 0.0 UniRef50_A6NR30 Putative uncharacterized protein n=1 Tax=Bactero... 642 0.0 UniRef50_C0N9A7 Single-stranded-DNA-specific exonuclease RecJ n=... 641 0.0 UniRef50_C8VZX5 Single-stranded-DNA-specific exonuclease RecJ n=... 640 0.0 UniRef50_C6D7X7 Single-stranded-DNA-specific exonuclease RecJ n=... 640 0.0 UniRef50_Q183I1 Putative single-stranded-DNA-specific exonucleas... 637 0.0 UniRef50_A8VTW9 Holliday junction DNA helicase RuvB n=2 Tax=Baci... 635 e-180 UniRef50_B6SE72 RecJ n=2 Tax=Kingella RepID=B6SE72_9NEIS 635 e-180 UniRef50_A3DF49 Single-stranded-DNA-specific exonuclease RecJ n=... 634 e-180 UniRef50_UPI0001789928 single-stranded-DNA-specific exonuclease ... 633 e-180 UniRef50_B1HV84 Single-stranded-DNA-specific exonuclease recJ n=... 632 e-179 UniRef50_C4V0G0 Possible single-stranded-DNA-specific exonucleas... 632 e-179 UniRef50_B3E2R5 Single-stranded-DNA-specific exonuclease RecJ n=... 627 e-178 UniRef50_A4BBM4 Single-stranded-DNA-specific exonuclease RecJ n=... 626 e-178 UniRef50_C1SHI0 Exonuclease RecJ n=1 Tax=Denitrovibrio acetiphil... 626 e-177 UniRef50_A5D3H7 Putative uncharacterized protein n=1 Tax=Pelotom... 625 e-177 UniRef50_Q3A3C6 Single-stranded-DNA-specific exonuclease RecJ n=... 624 e-177 UniRef50_Q1N0E3 Single-stranded-DNA-specific exonuclease RecJ n=... 624 e-177 UniRef50_A9IQX3 Single-stranded-DNA-specific exonuclease n=163 T... 624 e-177 UniRef50_C9KKH1 Single-stranded-DNA-specific exonuclease RecJ n=... 624 e-177 UniRef50_B8FQU1 Single-stranded-DNA-specific exonuclease RecJ n=... 622 e-177 UniRef50_A9B300 Single-stranded-DNA-specific exonuclease RecJ n=... 621 e-176 UniRef50_B2A2F5 Single-stranded-DNA-specific exonuclease RecJ n=... 620 e-176 UniRef50_Q8EPR4 Single-strand DNA-specific exonuclease n=1 Tax=O... 620 e-176 UniRef50_Q1LTU5 Single-stranded-DNA-specific exonuclease RecJ n=... 619 e-176 UniRef50_C8NEZ1 Single-stranded-DNA-specific exonuclease RecJ n=... 619 e-175 UniRef50_Q6F719 SsDNA exonuclease, 5'--> 3' specific , Mg depend... 617 e-175 UniRef50_Q2YBC4 Exonuclease RecJ n=1 Tax=Nitrosospira multiformi... 614 e-174 UniRef50_C6IZW2 Single-stranded-DNA-specific exonuclease RecJ n=... 614 e-174 UniRef50_Q39XC5 RecJ exonuclease n=6 Tax=Desulfuromonadales RepI... 613 e-174 UniRef50_A1HMM2 Single-stranded-DNA-specific exonuclease RecJ n=... 612 e-173 UniRef50_Q1WT52 Single-stranded-DNA-specific exonuclease n=5 Tax... 611 e-173 UniRef50_A5WDK1 Exonuclease RecJ n=3 Tax=Psychrobacter RepID=A5W... 610 e-173 UniRef50_Q2LTE9 Single-stranded DNA-specific exonuclease n=1 Tax... 610 e-173 UniRef50_D2QL07 Single-stranded-DNA-specific exonuclease RecJ n=... 608 e-172 UniRef50_C6P9C5 Single-stranded-DNA-specific exonuclease RecJ n=... 606 e-172 UniRef50_B2RMC6 Single-stranded-DNA-specific exonuclease n=53 Ta... 605 e-171 UniRef50_C9LKW7 Single-stranded-DNA-specific exonuclease RecJ n=... 603 e-171 UniRef50_Q87EB5 Single-stranded DNA exonuclease n=23 Tax=Bacteri... 600 e-170 UniRef50_C6NUA0 Single-stranded-DNA-specific exonuclease recJ n=... 600 e-170 UniRef50_D1BND6 Single-stranded-DNA-specific exonuclease RecJ n=... 600 e-170 UniRef50_A5UUU1 Single-stranded-DNA-specific exonuclease RecJ n=... 600 e-170 UniRef50_Q2SXD4 Single-stranded-DNA-specific exonuclease RecJ n=... 599 e-169 UniRef50_D2MJC9 Single-stranded-DNA-specific exonuclease RecJ n=... 599 e-169 UniRef50_Q12ES6 Single-stranded-DNA-specific exonuclease RecJ n=... 599 e-169 UniRef50_A0L8H3 Exonuclease RecJ n=2 Tax=Proteobacteria RepID=A0... 597 e-169 UniRef50_B6BWW7 Single-stranded-DNA-specific exonuclease RecJ n=... 597 e-169 UniRef50_Q11NW2 Single-strand DNA specific exonuclease n=13 Tax=... 597 e-169 UniRef50_D2RLC4 Single-stranded-DNA-specific exonuclease RecJ n=... 596 e-169 UniRef50_B0VEZ1 Putative ssDNA exonuclease, 5'--> 3'-specific n=... 596 e-169 UniRef50_Q3A9Z7 Single-stranded DNA-specific exonuclease RecJ n=... 596 e-169 UniRef50_Q26GN0 Single-stranded DNA-specific exonuclease n=7 Tax... 596 e-169 UniRef50_Q3MAJ6 Exonuclease RecJ n=6 Tax=Cyanobacteria RepID=Q3M... 595 e-168 UniRef50_C6VR18 Single-strand DNA-specific exonuclease RecJ n=6 ... 595 e-168 UniRef50_A7VWX6 Putative uncharacterized protein n=1 Tax=Clostri... 594 e-168 UniRef50_B8DHM3 Single-stranded-DNA-specific exonuclease RecJ n=... 594 e-168 UniRef50_C0XKS9 Exonuclease RecJ n=3 Tax=Lactobacillus RepID=C0X... 594 e-168 UniRef50_B8FE66 Single-stranded-DNA-specific exonuclease RecJ n=... 594 e-168 UniRef50_A1AWT7 Single-stranded-DNA-specific exonuclease RecJ n=... 593 e-168 UniRef50_A4SDH3 Single-stranded-DNA-specific exonuclease RecJ n=... 593 e-168 UniRef50_Q038P0 Exonuclease RecJ n=8 Tax=Lactobacillus RepID=Q03... 593 e-168 UniRef50_C0QDK3 RecJ n=1 Tax=Desulfobacterium autotrophicum HRM2... 592 e-168 UniRef50_Q8D2B5 RecJ protein n=1 Tax=Wigglesworthia glossinidia ... 592 e-168 UniRef50_A5MZ56 RecJ n=30 Tax=Clostridium RepID=A5MZ56_CLOK5 592 e-167 UniRef50_A8SGF1 Putative uncharacterized protein n=1 Tax=Faecali... 591 e-167 UniRef50_A6BZD1 Single-strand DNA-specific exonuclease n=2 Tax=P... 591 e-167 UniRef50_C0X5S7 Single-stranded-DNA-specific exonuclease RecJ n=... 591 e-167 UniRef50_A7H9Y9 Single-stranded-DNA-specific exonuclease RecJ n=... 590 e-167 UniRef50_C6XU81 Single-stranded-DNA-specific exonuclease RecJ n=... 590 e-167 UniRef50_C5EEP4 Putative uncharacterized protein n=1 Tax=Clostri... 590 e-167 UniRef50_B7K3K2 Single-stranded-DNA-specific exonuclease RecJ n=... 589 e-166 UniRef50_B2GBD3 Single-strand DNA-specific exonuclease n=21 Tax=... 588 e-166 UniRef50_Q03F38 Exonuclease RecJ n=3 Tax=Lactobacillales RepID=Q... 588 e-166 UniRef50_B1YJG2 Single-stranded-DNA-specific exonuclease RecJ n=... 587 e-166 UniRef50_D0KXT7 Single-stranded-DNA-specific exonuclease RecJ n=... 587 e-166 UniRef50_Q0AYS8 Single-stranded DNA-specific exonuclease-like pr... 587 e-166 UniRef50_A4XHU1 Single-stranded-DNA-specific exonuclease RecJ n=... 586 e-166 UniRef50_B9E712 Putative uncharacterized protein n=1 Tax=Macroco... 586 e-166 UniRef50_C7H6M6 Single-stranded-DNA-specific exonuclease RecJ n=... 584 e-165 UniRef50_C5RCA3 Recombination protein J n=1 Tax=Weissella parame... 584 e-165 UniRef50_D0MFV1 Single-stranded-DNA-specific exonuclease RecJ n=... 584 e-165 UniRef50_C5QT22 Recombination protein RecJ n=2 Tax=Staphylococcu... 582 e-164 UniRef50_UPI00016BFB11 single-stranded-DNA-specific exonuclease ... 582 e-164 UniRef50_Q2YT94 Single-strand DNA-specific exonuclease n=60 Tax=... 582 e-164 UniRef50_C7XTQ6 Single-stranded-DNA-specific exonuclease RecJ n=... 581 e-164 UniRef50_B0K968 Single-stranded-DNA-specific exonuclease RecJ n=... 581 e-164 UniRef50_C1A4A6 Single-stranded-DNA-specific exonuclease n=1 Tax... 580 e-164 UniRef50_C4GBT7 Putative uncharacterized protein n=1 Tax=Shuttle... 580 e-164 UniRef50_B0PEB7 Putative uncharacterized protein n=1 Tax=Anaerot... 580 e-164 UniRef50_C5CED3 Single-stranded-DNA-specific exonuclease RecJ n=... 579 e-163 UniRef50_Q5HNR5 Single-stranded-DNA-specific exonuclease RecJ n=... 576 e-163 UniRef50_Q67LM2 Single-strand DNA-specific exonuclease n=1 Tax=S... 575 e-162 UniRef50_A8YVP8 Single-stranded-DNA-specific exonuclease n=6 Tax... 575 e-162 UniRef50_B8HKK4 Single-stranded-DNA-specific exonuclease RecJ n=... 573 e-162 UniRef50_A8ZTX7 Single-stranded-DNA-specific exonuclease RecJ n=... 571 e-161 UniRef50_Q02C20 Single-stranded-DNA-specific exonuclease RecJ n=... 571 e-161 UniRef50_C4G696 Putative uncharacterized protein n=1 Tax=Abiotro... 571 e-161 UniRef50_C6X239 Single-stranded-DNA-specific exonuclease recJ n=... 570 e-161 UniRef50_UPI0001C37215 single-stranded-DNA-specific exonuclease ... 569 e-160 UniRef50_UPI0000E87D07 exodeoxyribonuclease VII, single-stranded... 568 e-160 UniRef50_C6JNX8 Single-stranded-DNA-specific exonuclease recJ n=... 567 e-160 UniRef50_A2SJG6 Exonuclease RecJ n=8 Tax=Proteobacteria RepID=A2... 567 e-160 UniRef50_C6LAA7 Single-stranded-DNA-specific exonuclease RecJ n=... 566 e-160 UniRef50_Q2S0E3 Single-stranded-DNA-specific exonuclease RecJ n=... 566 e-160 UniRef50_C2M9T5 Single-stranded-DNA-specific exonuclease RecJ n=... 566 e-160 UniRef50_C0EW92 Putative uncharacterized protein n=2 Tax=Clostri... 566 e-159 UniRef50_A7HJW8 Single-stranded-DNA-specific exonuclease RecJ n=... 565 e-159 UniRef50_B2IMS8 Single-stranded-DNA-specific exonuclease RecJ n=... 565 e-159 UniRef50_A8MGN3 Single-stranded-DNA-specific exonuclease RecJ n=... 565 e-159 UniRef50_Q1IIX8 Single-stranded-DNA-specific exonuclease RecJ n=... 565 e-159 UniRef50_A5FQT9 Single-stranded-DNA-specific exonuclease RecJ n=... 564 e-159 UniRef50_B1C9H3 Putative uncharacterized protein n=1 Tax=Anaerof... 563 e-159 UniRef50_C3WCZ7 Single-stranded-DNA-specific exonuclease recJ n=... 563 e-159 UniRef50_C0WCD6 Exonuclease recJ n=1 Tax=Acidaminococcus sp. D21... 562 e-158 UniRef50_B9XN50 Single-stranded-DNA-specific exonuclease RecJ n=... 561 e-158 UniRef50_C9RBA5 Single-stranded-DNA-specific exonuclease RecJ n=... 560 e-158 UniRef50_A9KLD3 Single-stranded-DNA-specific exonuclease RecJ n=... 559 e-158 UniRef50_Q8DJI0 Tll1243 protein n=1 Tax=Thermosynechococcus elon... 558 e-157 UniRef50_D2R2J0 Single-stranded-DNA-specific exonuclease RecJ n=... 558 e-157 UniRef50_A8F454 Single-stranded-DNA-specific exonuclease RecJ n=... 555 e-156 UniRef50_B0CAF5 Single-stranded-DNA-specific exonuclease RecJ n=... 555 e-156 UniRef50_D1AWA1 Single-stranded-DNA-specific exonuclease RecJ n=... 555 e-156 UniRef50_B1I335 Single-stranded-DNA-specific exonuclease RecJ n=... 554 e-156 UniRef50_D2LJ47 Single-stranded-DNA-specific exonuclease RecJ n=... 554 e-156 UniRef50_Q049X0 Exonuclease RecJ n=22 Tax=Lactobacillus RepID=Q0... 554 e-156 UniRef50_Q03W56 Single-stranded DNA-specific exonuclease n=3 Tax... 553 e-156 UniRef50_Q1PZA9 Similar to exonuclease RecJ n=1 Tax=Candidatus K... 553 e-156 UniRef50_C4FWR9 Putative uncharacterized protein n=1 Tax=Catonel... 553 e-156 UniRef50_C5NYP0 Single-stranded-DNA-specific exonuclease RecJ n=... 552 e-155 UniRef50_A6LJS2 Single-stranded-DNA-specific exonuclease RecJ n=... 551 e-155 UniRef50_C7NEA4 Single-stranded-DNA-specific exonuclease RecJ n=... 551 e-155 UniRef50_C5RPJ0 Single-stranded-DNA-specific exonuclease RecJ n=... 551 e-155 UniRef50_B2ULA8 Single-stranded-DNA-specific exonuclease RecJ n=... 550 e-155 UniRef50_A3DBX0 Single-stranded-DNA-specific exonuclease RecJ n=... 549 e-154 UniRef50_B0MLV1 Putative uncharacterized protein n=1 Tax=Eubacte... 549 e-154 UniRef50_C6NXH8 Single-stranded-DNA-specific exonuclease recJ n=... 548 e-154 UniRef50_B0P091 Putative uncharacterized protein n=4 Tax=Clostri... 548 e-154 UniRef50_Q2JN66 Single-stranded-DNA-specific exonuclease RecJ n=... 548 e-154 UniRef50_C8WZW9 Single-stranded-DNA-specific exonuclease RecJ n=... 548 e-154 UniRef50_C8QX81 Single-stranded-DNA-specific exonuclease RecJ n=... 547 e-154 UniRef50_Q5FGN3 Single-stranded-DNA-specific exonuclease recJ n=... 547 e-154 UniRef50_A9IVX3 Single-stranded-DNA-specific exonuclease n=3 Tax... 547 e-154 UniRef50_B7AQW7 Putative uncharacterized protein n=1 Tax=Bactero... 547 e-154 UniRef50_C0EBF3 Putative uncharacterized protein n=1 Tax=Clostri... 545 e-153 UniRef50_Q2RRN7 RecJ exonuclease n=3 Tax=Alphaproteobacteria Rep... 545 e-153 UniRef50_UPI00016C4908 single-strand DNA-specific exonuclease n=... 545 e-153 UniRef50_B1ZV73 Single-stranded-DNA-specific exonuclease RecJ n=... 544 e-153 UniRef50_A7KV88 SsDNA exonuclease n=1 Tax=Bacillus phage 0305phi... 544 e-153 UniRef50_Q7NPL4 Single-strand-DNA-specific exonuclease n=1 Tax=G... 544 e-153 UniRef50_C8WA12 Single-stranded-DNA-specific exonuclease RecJ n=... 543 e-153 UniRef50_C7RHH6 Single-stranded-DNA-specific exonuclease RecJ n=... 543 e-153 UniRef50_UPI00017452AB single-stranded-DNA-specific exonuclease ... 543 e-153 UniRef50_A9BF16 Single-stranded-DNA-specific exonuclease RecJ n=... 542 e-152 UniRef50_C7HTZ0 Single-stranded-DNA-specific exonuclease RecJ n=... 542 e-152 UniRef50_Q1NUV0 RecJ exonuclease n=2 Tax=delta proteobacterium M... 541 e-152 UniRef50_D0RNX1 Single-stranded-DNA-specific exonuclease RecJ n=... 540 e-152 UniRef50_B0S1I9 Single-strand DNA-specific exonuclease n=3 Tax=C... 540 e-152 UniRef50_C1F3K9 Single-stranded-DNA-specific exonuclease RecJ n=... 540 e-152 UniRef50_C7MMI3 Single-stranded-DNA-specific exonuclease RecJ n=... 540 e-152 UniRef50_Q0C0S5 Single-stranded-DNA-specific exonuclease RecJ n=... 538 e-151 UniRef50_Q137L0 Exonuclease RecJ n=91 Tax=Alphaproteobacteria Re... 538 e-151 UniRef50_B0NCG3 Putative uncharacterized protein n=9 Tax=Clostri... 537 e-151 UniRef50_A8UBS7 Single-stranded-DNA-specific exonuclease RecJ n=... 537 e-151 UniRef50_UPI0001BC5E35 single-stranded-DNA-specific exonuclease ... 536 e-151 UniRef50_C0GFY2 Single-stranded-DNA-specific exonuclease RecJ n=... 536 e-151 UniRef50_A8F1S2 Single-stranded-DNA-specific exonuclease RecJ n=... 534 e-150 UniRef50_C2KX60 Single-stranded-DNA-specific exonuclease RecJ n=... 534 e-150 UniRef50_A5EVF0 DNA exonuclease RecJ n=2 Tax=Cardiobacteriaceae ... 533 e-150 UniRef50_Q1GEL8 Single-stranded-DNA-specific exonuclease RecJ n=... 532 e-149 UniRef50_A8SN06 Putative uncharacterized protein n=1 Tax=Parvimo... 530 e-149 UniRef50_B5YIG7 Single-stranded-DNA-specific exonuclease RecJ n=... 529 e-149 UniRef50_Q0API9 Single-stranded-DNA-specific exonuclease RecJ n=... 529 e-148 UniRef50_C6XKA3 Single-stranded-DNA-specific exonuclease RecJ n=... 529 e-148 UniRef50_D1VS52 Single-stranded-DNA-specific exonuclease RecJ n=... 528 e-148 UniRef50_C6XG71 Single-stranded-DNA-specific exonuclease protein... 527 e-148 UniRef50_Q6MEM6 Putative ssDNA-specific exonuclease n=2 Tax=Para... 526 e-147 UniRef50_B9K8M2 Single stranded DNA-specific exonuclease n=6 Tax... 525 e-147 UniRef50_Q7U6Y0 Possible single-stranded-DNA-specific exonucleas... 525 e-147 UniRef50_C3CT94 Single-stranded-DNA-specific exonuclease recj n=... 525 e-147 UniRef50_D1N562 Single-stranded-DNA-specific exonuclease RecJ n=... 525 e-147 UniRef50_C3WKI0 Single-stranded-DNA-specific exonuclease recJ n=... 525 e-147 UniRef50_A1VF80 Single-stranded-DNA-specific exonuclease RecJ n=... 524 e-147 UniRef50_B0TAW1 Single-stranded-DNA-specific exonuclease recj n=... 524 e-147 UniRef50_Q2RHV6 Single-stranded-DNA-specific exonuclease RecJ n=... 522 e-146 UniRef50_A3UCE8 Single-stranded-DNA-specific exonuclease RecJ n=... 522 e-146 UniRef50_A4E7W6 Putative uncharacterized protein n=1 Tax=Collins... 517 e-145 UniRef50_A6Q667 Single-strand DNA-specific exonuclease n=1 Tax=S... 517 e-145 UniRef50_A5TTL1 Recombination protein J n=7 Tax=Fusobacterium Re... 516 e-145 UniRef50_Q04F00 Single-stranded DNA-specific exonuclease n=1 Tax... 516 e-144 UniRef50_Q3AK10 Single-stranded-DNA-specific exonuclease RecJ n=... 516 e-144 UniRef50_D0LJ88 Single-stranded-DNA-specific exonuclease RecJ n=... 515 e-144 UniRef50_UPI0001C31CC5 single-stranded-DNA-specific exonuclease ... 515 e-144 UniRef50_A8SRX9 Putative uncharacterized protein n=2 Tax=Clostri... 514 e-144 UniRef50_A8EWZ8 Single-stranded DNA-specific exonuclease n=1 Tax... 511 e-143 UniRef50_A7ZG65 Single-stranded-DNA-specific exonuclease RecJ n=... 510 e-143 UniRef50_A9BAH9 Single-stranded DNA-specific exonuclease n=1 Tax... 509 e-142 UniRef50_C6V5J7 Single-stranded-DNA-specific exonuclease RecJ n=... 507 e-142 UniRef50_C9RIN9 Single-stranded-DNA-specific exonuclease RecJ n=... 506 e-142 UniRef50_C5B4H2 Single-stranded-DNA-specific exonuclease protein... 505 e-141 UniRef50_Q1QT56 Exonuclease RecJ n=1 Tax=Chromohalobacter salexi... 505 e-141 UniRef50_Q6MKZ4 Single-strand DNA-specific exonuclease n=1 Tax=B... 505 e-141 UniRef50_B5ZFU4 Single-stranded-DNA-specific exonuclease RecJ n=... 503 e-141 UniRef50_Q6ALW7 Related to single-strand DNA-specific exonucleas... 502 e-140 UniRef50_Q7MAI2 PUTATIVE SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEAS... 500 e-140 UniRef50_P73518 Single-strand-DNA-specific exonuclease; RecJ n=1... 498 e-139 UniRef50_Q30NS6 Exonuclease RecJ n=3 Tax=Epsilonproteobacteria R... 498 e-139 UniRef50_B9L7S0 Single-stranded-DNA-specific exonuclease RecJ n=... 497 e-139 UniRef50_C7H0U6 Single-stranded-DNA-specific exonuclease RecJ n=... 497 e-139 UniRef50_A5VFK4 Single-stranded-DNA-specific exonuclease RecJ n=... 497 e-139 UniRef50_Q2JMF8 Single-stranded-DNA-specific exonuclease RecJ n=... 497 e-139 UniRef50_B4WFY1 Single-stranded-DNA-specific exonuclease RecJ, p... 497 e-139 UniRef50_B2V9Q3 Single-stranded-DNA-specific exonuclease RecJ n=... 496 e-138 UniRef50_D0EM60 Single-stranded-DNA-specific exonuclease n=3 Tax... 495 e-138 UniRef50_A2C286 DHH family:DHHA1 domain:Single-stranded-DNA-spec... 495 e-138 UniRef50_A6G9W0 Single-stranded-DNA-specific exonuclease RecJ n=... 494 e-138 UniRef50_UPI00016B257B single-stranded-DNA-specific exonuclease ... 494 e-138 UniRef50_Q253D9 Mg-dependent 5'-3' ssDNA-specific exonuclease n=... 493 e-138 UniRef50_A1U815 Phosphoesterase, RecJ domain protein n=1 Tax=Mar... 493 e-137 UniRef50_B9L1D5 Single-stranded-DNA-specific exonuclease RecJ n=... 491 e-137 UniRef50_D1C3K1 Single-stranded-DNA-specific exonuclease RecJ n=... 490 e-137 UniRef50_A5FY25 Single-stranded-DNA-specific exonuclease RecJ n=... 489 e-136 UniRef50_B2J6M4 Single-stranded-DNA-specific exonuclease RecJ n=... 489 e-136 UniRef50_Q7VBV8 Single-stranded DNA-specific exonuclease n=1 Tax... 489 e-136 UniRef50_UPI0001C38E3E exonuclease RecJ n=1 Tax=Arthrospira plat... 488 e-136 UniRef50_A3VNM8 Single-stranded-DNA-specific exonuclease RecJ n=... 486 e-135 UniRef50_D1AL25 Single-stranded-DNA-specific exonuclease RecJ n=... 486 e-135 UniRef50_B5W1F3 Single-stranded-DNA-specific exonuclease RecJ (F... 486 e-135 UniRef50_C3WCG5 Single-stranded-DNA-specific exonuclease recJ n=... 483 e-135 UniRef50_B1XPL2 Single-strand-DNA-specific exonuclease n=3 Tax=C... 483 e-134 UniRef50_C2D7P8 Putative uncharacterized protein n=1 Tax=Atopobi... 481 e-134 UniRef50_D0GIS6 Single-stranded-DNA-specific exonuclease RecJ n=... 480 e-134 UniRef50_A6DSV4 Single-stranded-DNA-specific exonuclease RecJ n=... 478 e-133 UniRef50_D1CG92 Single-stranded-DNA-specific exonuclease RecJ n=... 477 e-133 UniRef50_B5YFK1 Single-stranded-DNA-specific exonuclease RecJ n=... 476 e-133 UniRef50_Q1IXZ0 Single-stranded-DNA-specific exonuclease RecJ n=... 475 e-132 UniRef50_B8H563 Single-stranded-DNA-specific exonuclease recJ n=... 473 e-131 UniRef50_A0LQ39 Phosphoesterase, RecJ domain protein n=1 Tax=Syn... 471 e-131 Sequences not found previously or not previously below threshold: >UniRef50_P28355 Single-stranded-DNA-specific exonuclease recJ n=222 Tax=cellular organisms RepID=RECJ_SALTY Length = 577 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 529/577 (91%), Positives = 555/577 (96%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA 60 MKQQ QLRRRE DETA+LPA+LPPLLRRLYASRGVRSA+ELERSVKGMLPWQQLSG++ A Sbjct: 1 MKQQRQLRRREADETAELPADLPPLLRRLYASRGVRSARELERSVKGMLPWQQLSGIDNA 60 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 VEILYNAFREGTRIIVVGDFDADGATSTALSVL MR+LGC NI YLVPNRFEDGYGLSPE Sbjct: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPE 120 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 VVDQA ARGAQLIVTVDNGISSHAGV HA++LGIPVIVTDHHLPGDTLP AEAIINPNLR Sbjct: 121 VVDQAKARGAQLIVTVDNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLR 180 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 DC FPSKSLAGVGVAFYLMLALRTFLRD+GWFDERNIA PNLAELLDLVALGTVADVVPL Sbjct: 181 DCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPL 240 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 DANNRILTWQG+SRIRAGKCRPGIKALLE++NRD Q+LAASDLGFALGPRLNAAGRLDDM Sbjct: 241 DANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDM 300 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 SVGVALLLCDN+GEARVLA+ELDALNQTRKEIEQGMQ EAL LCEKLERS +TLPGGLAM Sbjct: 301 SVGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAM 360 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP Sbjct: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 +M+KFGGHAMAAGLSLEE KF+ FQQRFGELVTEWLDP+LLQGEV+SDGPLS AEM+ME Sbjct: 421 DLMIKFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSME 480 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA 540 VAQLLRDAGPWGQMFPEPLFDG FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN+DT Sbjct: 481 VAQLLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTT 540 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 WPDNGVREV+LAYKLDINEFRGNRSLQIIID+IWP+ Sbjct: 541 CWPDNGVREVELAYKLDINEFRGNRSLQIIIDDIWPL 577 >UniRef50_P39693 Single-stranded-DNA-specific exonuclease recJ n=116 Tax=Gammaproteobacteria RepID=RECJ_DICD3 Length = 575 Score = 759 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 431/577 (74%), Positives = 497/577 (86%), Gaps = 2/577 (0%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA 60 M QLRRR ET +LP LP LLRRLYA RGVR QELERS++G+L ++ L G+ +A Sbjct: 1 MNVVTQLRRRPTAET-ELPDSLPALLRRLYAQRGVRQMQELERSLRGLLDYRLLGGITQA 59 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 VE+L A + RI++VGDFDAD ATSTAL+VLA+RS+ + YLVPNRFEDGYGLSPE Sbjct: 60 VEVLRQALADNRRIVIVGDFDADRATSTALTVLALRSMAAREVQYLVPNRFEDGYGLSPE 119 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 VV QA A+GA+LIVTVDNGISSHAGV+ A GI V+VTDHHLPG+TLPAAEA+INPNL Sbjct: 120 VVAQAPAKGAELIVTVDNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLS 179 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 DC FPSK+LAGVGVAFYLM+ALR LR+ GWF ER +A PNLAELLDLVALGTVADVVPL Sbjct: 180 DCAFPSKALAGVGVAFYLMMALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPL 239 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 DANNRIL QG+SRIRAGKCRPGI+ALLEV+NRDA +L ASDLGFALGPRLNAAGRLDDM Sbjct: 240 DANNRILISQGLSRIRAGKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDM 299 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 SVGV LLLC +I +AR+LA++LDALNQ+R+EIE GMQ+EAL LCE+LER+RDTLP GLAM Sbjct: 300 SVGVELLLCKHIVQARMLASDLDALNQSRREIEAGMQVEALHLCEQLERTRDTLPLGLAM 359 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 YHP+WHQGVVGILASRIKERFHRPVIAFAPAGDG LKGSGRSI GLH+ ALERLDT +P Sbjct: 360 YHPQWHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSIAGLHLH-ALERLDTCHP 418 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 G+MLKFGGHAMAAGLSL ED+F F+QRF +LV EWLD S L+G V SDG L+ ++T+ Sbjct: 419 GLMLKFGGHAMAAGLSLVEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELASPDVTLG 478 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA 540 A++LR+AGPWGQ FPEP FDG FRLLQQRLVGERHLKVMVEP+GGGPLLDGIAFNVDT Sbjct: 479 TAEMLREAGPWGQAFPEPTFDGRFRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTL 538 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 LWPD+ VREV+LAYKLD+NEFRG RS+Q++I+++WP+ Sbjct: 539 LWPDSSVREVELAYKLDVNEFRGKRSVQLLIEHLWPL 575 >UniRef50_Q2NRF9 Single-stranded-DNA-specific exonuclease n=4 Tax=Gammaproteobacteria RepID=Q2NRF9_SODGM Length = 578 Score = 755 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 411/578 (71%), Positives = 489/578 (84%), Gaps = 1/578 (0%) Query: 1 MKQQIQLRRREVDETADLP-AELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEK 59 M +LRRR + ++A L A++PPLL+RLY RGV + ELER V+G+L + L+G+E+ Sbjct: 1 MNMTTELRRRPLSDSAVLAEADIPPLLKRLYVQRGVCAVGELERGVRGLLAYHTLTGIEQ 60 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 AV++L A + RI+VVGDFDADGATSTAL+VLA+R +G ID+LVPNRFEDGYGLSP Sbjct: 61 AVDLLIRALADQRRIMVVGDFDADGATSTALTVLALRQMGAQTIDFLVPNRFEDGYGLSP 120 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 EVV+QA ARGAQLI+TVDNGISSHAGV A GIPV++TDHHLPGDTLPAAEAI+NPNL Sbjct: 121 EVVEQAAARGAQLILTVDNGISSHAGVTLAHEKGIPVLITDHHLPGDTLPAAEAIVNPNL 180 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 RDC F SKSLAGVGVAFYLMLALR L D GWF +R IA P LAELLDLVALGTVADVVP Sbjct: 181 RDCTFASKSLAGVGVAFYLMLALRARLNDSGWFTQRGIAAPKLAELLDLVALGTVADVVP 240 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 LDANNRIL QG+SRIRAG+CRPGI+AL EVANRD +L ASDLGFALGPRLNAAGRLDD Sbjct: 241 LDANNRILVHQGLSRIRAGRCRPGIRALAEVANRDITRLCASDLGFALGPRLNAAGRLDD 300 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 MSVGVALLL +++ +AR+LA ELDALNQTR+EIE GM+ EAL LC+ + R +P GLA Sbjct: 301 MSVGVALLLSEDLPQARMLAAELDALNQTRREIEHGMEAEALALCQSMARDEQAMPFGLA 360 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 +YH +WHQGVVGILASRIKERFHRPVIAFAPAG+G LKGSGRS+ GLHMRD LERLDTL+ Sbjct: 361 IYHEQWHQGVVGILASRIKERFHRPVIAFAPAGEGVLKGSGRSVAGLHMRDLLERLDTLH 420 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 PGM+LKFGGHAMAAGL+LE +F+ F+QRF ELV EWLDP++L+G + SDG L+ E+++ Sbjct: 421 PGMILKFGGHAMAAGLTLEHAQFERFRQRFAELVDEWLDPAMLEGVIWSDGELAGQELSL 480 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT 539 A+LLRD GPWGQ FP+PLFDG FR+L QRLVGE+HLK+++EPV GGP+LDGIAFN+D+ Sbjct: 481 TTAELLRDGGPWGQGFPDPLFDGRFRVLNQRLVGEKHLKLLLEPVAGGPMLDGIAFNIDS 540 Query: 540 ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 LWPDN V V+LAY+L++NEFRGNRSLQ++I +IWP+ Sbjct: 541 RLWPDNSVHTVELAYRLEVNEFRGNRSLQLLIQHIWPL 578 >UniRef50_B4RXN3 Single-stranded-DNA-specific exonuclease RecJ n=12 Tax=Gammaproteobacteria RepID=B4RXN3_ALTMD Length = 573 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 307/568 (54%), Positives = 415/568 (73%), Gaps = 2/568 (0%) Query: 7 LRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYN 66 + RRE+ A L ++L P++ R+Y R + + +LE ++G+ + L G+ +A +IL Sbjct: 5 IVRREIS-GASLSSDLHPVIDRIYRGRNIANIDDLENGLRGLTHFNALKGMPEAAQILAT 63 Query: 67 AFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH 126 A + RII+VGDFDADGATST++ +LA+R++G N+D+LVPNRF+ GYGLS +VD+A Sbjct: 64 AIEQNKRIIIVGDFDADGATSTSVCILALRAMGFDNVDFLVPNRFDFGYGLSVPIVDEAA 123 Query: 127 ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPS 186 +GA +IVTVDNGIS GV HA+ LGI V+VTDHHLPGD LP A+AI+NPN C FPS Sbjct: 124 KQGADIIVTVDNGISCIDGVTHAKGLGIQVVVTDHHLPGDVLPPADAIVNPNQPGCEFPS 183 Query: 187 KSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRI 246 K+LAGVGVAFY+MLAL+ L+ QG+F++ IA PNLA LLD+VA+GTVADVV LD NNRI Sbjct: 184 KNLAGVGVAFYIMLALKAKLQQQGYFEKAGIAPPNLASLLDIVAVGTVADVVVLDKNNRI 243 Query: 247 LTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVAL 306 L QG+ RIRAG+CRPGIKAL+EVANRD L ++DLGF +GPRLNAAGRLDDMS G+A Sbjct: 244 LVHQGLQRIRAGQCRPGIKALVEVANRDCAHLTSTDLGFVVGPRLNAAGRLDDMSQGIAC 303 Query: 307 LLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWH 366 LL D+ +AR++A ELDALN+ R+EIE GM+ +A E++ +P L +Y ++H Sbjct: 304 LLEDDTIQARMIAAELDALNKERREIETGMKAQAEMALEQMVLDEGDMPSALVVYREDFH 363 Query: 367 QGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKF 426 QGV+GI+A R+KE++ +PVIAFA D +KGS RSI G+H+RD L+ ++T YPG++ KF Sbjct: 364 QGVIGIVAGRLKEKYLKPVIAFAHQDDLIIKGSARSIPGVHIRDVLDEVNTRYPGVIEKF 423 Query: 427 GGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLR 486 GGHAMAAGLSL K + F++ F ++ + L ++SDG LS +E+ + A LLR Sbjct: 424 GGHAMAAGLSLPVAKLRDFERAFIDIAGKHLAKLDGNHALLSDGDLSASELCLPFAHLLR 483 Query: 487 DAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNG 546 AGP+GQ F PLFDG F LL QRLVG++HLK++++ G +D IAFNVD WP+ Sbjct: 484 QAGPFGQGFESPLFDGEFSLLDQRLVGQKHLKMVLKG-DGANEVDAIAFNVDLKAWPNAM 542 Query: 547 VREVQLAYKLDINEFRGNRSLQIIIDNI 574 V+ V +AY+LDIN FRG ++Q+I++ I Sbjct: 543 VKRVHVAYRLDINVFRGQETVQLIVEQI 570 >UniRef50_Q5QYV7 Single-stranded DNA-specific exonuclease n=1 Tax=Idiomarina loihiensis RepID=Q5QYV7_IDILO Length = 570 Score = 687 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 300/572 (52%), Positives = 394/572 (68%), Gaps = 7/572 (1%) Query: 6 QLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILY 65 ++RR ++ + LP ++PPLLR++YA RGVR A EL G+L + L + KAVE+L Sbjct: 5 EIRRYQLVDDDFLPQQMPPLLRQIYARRGVRRADELSLKASGLLHFSSLRDIGKAVELLQ 64 Query: 66 NAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA 125 NA + ++ + GDFDADGATS+AL V A+++ G + Y VPNR DGYGLS +V+Q Sbjct: 65 NALKNQAKVCICGDFDADGATSSALMVSALQAFGLQQVGYRVPNRMTDGYGLSVAMVEQL 124 Query: 126 HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFP 185 QLIVTVDNGI++H + AR GI V+VTDHHLP + LP A AI+NPN C F Sbjct: 125 AVENVQLIVTVDNGIAAHDAIVLAREKGIQVLVTDHHLPPEELPPANAIVNPNQHGCEFS 184 Query: 186 SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNR 245 SK+LAGVGVAFY++LALR+ LR+QG +PNLA+ LDLVALGTVADVVPLD NNR Sbjct: 185 SKNLAGVGVAFYVLLALRSALREQGV-----EPLPNLADWLDLVALGTVADVVPLDYNNR 239 Query: 246 ILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVA 305 +L QG++RIR G RPGIKALLEVANRDA +LAASDLGFALGPR+NAAGRLDD+ +G+ Sbjct: 240 VLVQQGIARIRKGMSRPGIKALLEVANRDASQLAASDLGFALGPRINAAGRLDDIGLGIE 299 Query: 306 LLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEW 365 LL A+ LA +L+ LNQ RK IE M+ A + KL + +P + +Y P+W Sbjct: 300 CLLAG-ETRAQQLAQQLNDLNQQRKSIETEMREHAESAVAKLCFDQGQVPDLVTLYQPDW 358 Query: 366 HQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLK 425 H GV+GI+A R+KE+ +RPVIA A D LKGS RS+ GLHMRD LER+ +L PG+M + Sbjct: 359 HAGVIGIVAGRVKEQVNRPVIALANDDDEFLKGSARSVSGLHMRDLLERVHSLQPGIMER 418 Query: 426 FGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLL 485 FGGHAMAAGL+++++ F + ++ +EWL Q SDG L+ +++++ L Sbjct: 419 FGGHAMAAGLTMKKENLTRFSELAEQVASEWLSEEQKQRVFWSDGELTTTQLSLDSVNTL 478 Query: 486 RDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDN 545 + AGPWGQ FPEP+FDG F L+ QR+VGERHLK++V G LLD IAFNVDT WP Sbjct: 479 QSAGPWGQQFPEPMFDGQFELVDQRIVGERHLKLVVRHPQ-GELLDAIAFNVDTQQWPAR 537 Query: 546 GVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 V+L YK +N FRG ++Q++++ I I Sbjct: 538 QASVVELLYKPQLNHFRGRTNVQLLVEQIRAI 569 >UniRef50_A4J2G7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2G7_DESRM Length = 885 Score = 658 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 209/581 (35%), Positives = 315/581 (54%), Gaps = 27/581 (4%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGV 57 K +++ + + + + +L +RG+ + + + M + + Sbjct: 6 KWRVKAPNPALQQILSFELGISKIFAQLLINRGIYTVDQARAFLGSELDKMFSPWLMQDM 65 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 +KAVE + A +G +I+V GD+D DG T T + VLA+R LGC DY +P+R E+GYGL Sbjct: 66 KKAVERILGARDKGEQILVYGDYDVDGITGTTVLVLALRRLGC-KADYFIPHRLEEGYGL 124 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + +++A RG L+VTVD GIS VE A++LG+ V++TDHH P LPAA AI++P Sbjct: 125 NKVALERAVERGVSLVVTVDCGISGAEEVEVAKALGLEVVITDHHEPPVQLPAAVAILDP 184 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 C++P K LAGVGVA L+ QG F++ ++ N E LDLV LGTVAD+ Sbjct: 185 KRSGCSYPFKELAGVGVALKLI---------QGLFEQAGLSQRNWEEYLDLVCLGTVADI 235 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 VPL NRIL G+ +I K RPG++AL++V+ A+ L +LGF L PRLNAAGR+ Sbjct: 236 VPLQGENRILVKHGLPQISNSK-RPGLQALIKVSGIKAEVLGTRELGFGLAPRLNAAGRM 294 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 D +GV LLL +++ A +A ELD N R+++E + EAL L E S + Sbjct: 295 GDAGLGVELLLAEDLLVAEEMAEELDRGNHERQQVESKVLSEALALLET--DSEISQGKV 352 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 L + WH GV+GI+ASR+ +RF+RPV + +G KGS RSI G ++ A+ Sbjct: 353 LVLASENWHPGVIGIVASRLVDRFYRPVFMIS-LEEGKGKGSARSIPGFNLYQAMVSC-- 409 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 + +FGGHAMAAG S+ DK F++ + E+L L + D ++ ++ Sbjct: 410 --QDHLEQFGGHAMAAGFSIHVDKINEFRKTINAMAEEFLSEEHLTPNLDLDALINLNDL 467 Query: 478 TMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGER--HLKVMVEPVGGGPLLDGIA 534 +M+ Q L P G P P+ ++ R VG+ HLK+ V +LDGI Sbjct: 468 SMDTVQELNQLSPLGHCNPGPILGCCQATVINCREVGKNGGHLKMRVRE--DHTVLDGIG 525 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 FN+ + V +A+ IN + G S+Q+ + + Sbjct: 526 FNLASYSEMLAANDTVDMAFIPSINVWNGRTSVQLEVKELK 566 >UniRef50_C6RPU9 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Acinetobacter RepID=C6RPU9_ACIRA Length = 570 Score = 656 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 260/574 (45%), Positives = 375/574 (65%), Gaps = 12/574 (2%) Query: 4 QIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEI 63 IQ+++R + + + P L + A RGV S QELE +K +L L G+E+AVEI Sbjct: 3 NIQVKQRPLLTRVESFQHVSPFLAHILARRGVASEQELELRLKYLLSP-CLKGLEQAVEI 61 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 + A + +I++VGD+DADGATSTAL +LA+R +G +++ YLVP+RF+ GYGL+P + D Sbjct: 62 INQAIDQQKKIVIVGDYDADGATSTALMILALRDMG-ADVAYLVPDRFKYGYGLTPAIAD 120 Query: 124 QAHAR-GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDC 182 A R L++TVDNGISSH GV+ A+ G+ VI+TDHHL PAAEA++NPN C Sbjct: 121 LAFTRFTPDLLITVDNGISSHEGVKQAQDHGMQVIITDHHLTTKETPAAEAVVNPNQLGC 180 Query: 183 NFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA 242 NFPSK+LAGVGVAFY++ L +F + + ++ N+ + LDLVALGT ADV LD Sbjct: 181 NFPSKALAGVGVAFYVLANLCSFRKR------ADQSVSNITQYLDLVALGTYADVASLDY 234 Query: 243 NNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSV 302 NNRIL G+ RI+ +CRPGI ALL++A R+ L A DLGF LGPR+NAAGR++ M + Sbjct: 235 NNRILVDAGLKRIQQQQCRPGILALLDIAGREPAALKAQDLGFVLGPRINAAGRMETMEI 294 Query: 303 GVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYH 362 G+ LL ++ A LA +L+ LN R++IE M+ EAL E+L+ S++ +P L M+ Sbjct: 295 GIECLLAPDLENAYPLARQLNQLNIERRQIEAQMKQEALRYLEQLQLSKENIPPALIMFE 354 Query: 363 PEWHQGVVGILASRIKERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALERLDTLYPG 421 WHQGV+GI+A R+KE+FHRP I FA DG +KGS RS++G+H+RD +E++ YP Sbjct: 355 EHWHQGVIGIVAGRLKEQFHRPSIVFAADEDGIHIKGSARSVEGIHIRDCIEQIAEQYPH 414 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 ++ FGGHA AAGL++ ++ F F+Q F +L+ +D +LL + +DG L + ++ Sbjct: 415 LVRYFGGHAAAAGLTIRKEHFLEFKQVFIQLIA-GMDETLLSATLWTDGELPVEALVLDT 473 Query: 482 AQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL 541 L+ GPWGQ FP P+F+G F+++ R + E HLK+ + + G ++D IAFN Sbjct: 474 VDLIEKLGPWGQKFPSPVFEGIFKVVDFRWLKETHLKLRL-ALNNGQVVDAIAFNAKDRF 532 Query: 542 WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 D +V L Y+L+ NEF GN LQ+ I ++ Sbjct: 533 EYDPENDQVDLVYELERNEFNGNTGLQLRIIHLK 566 >UniRef50_O32044 Single-stranded-DNA-specific exonuclease recJ n=101 Tax=Bacillales RepID=RECJ_BACSU Length = 786 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 177/580 (30%), Positives = 294/580 (50%), Gaps = 33/580 (5%) Query: 2 KQQIQLRRREVDETADLPAELP--PLLRRLYASRGVRSAQELERSVK----GMLPWQQLS 55 K + +++R + D+ L +L PL+ L RG +A+ + ++ Sbjct: 5 KMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFYDPFEMK 64 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 G+++A + + A + +I++ GD+DADG TST++ + ++ L + +D+ +P+RF++GY Sbjct: 65 GMKEAADRIKQAISQQEKIMIYGDYDADGVTSTSVMLHTLQKL-SAQVDFYIPDRFKEGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G + + RG LI+TVD GI++ + A+ LG+ VI+TDHH PG LP AI+ Sbjct: 124 GPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKELGLDVIITDHHEPGPELPDVRAIV 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P C +P K LAGVGVAF L AL L D ELLDL A+GT+A Sbjct: 184 HPKQPGCTYPFKELAGVGVAFKLAHALLGELPD---------------ELLDLAAIGTIA 228 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL NR++ G+ R+R R G+K L++++ D + +GF L PRLNA G Sbjct: 229 DLVPLHDENRLIATLGLERLRRTN-RLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R++ V LL+ ++ EA LA E+D LN+ R+++ M EA+ + E+ + Sbjct: 288 RIEQADPAVHLLMSEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIEMVEQQGLDQ---- 343 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALER 414 + + W+ GVVGI+AS++ +RF+RP I + G KGS RSI+G ++ ++L Sbjct: 344 TAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFESLSE 403 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + P FGGH MAAG++L+ + + R E+ L D Sbjct: 404 CRDILP----HFGGHPMAAGMTLKAEDVPDLRSRLNEIADNTLTEEDFIPVQEVDLVCGV 459 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 ++T+E + P+G + P+P + + L R +G V + LD + Sbjct: 460 EDITVESIAEMNMLSPFGMLNPKPHVLVENAVLEDVRKIGANKTHVKMTIRNESSQLDCV 519 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 FN + + ++ INE+ + Q++I + Sbjct: 520 GFNKGELQEGIVPGSRISIVGEMSINEWNNRKKPQLMIKD 559 >UniRef50_C0ZAP8 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAP8_BREBN Length = 782 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 200/581 (34%), Positives = 290/581 (49%), Gaps = 33/581 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGV 57 + ++ ++ + +L PL+ +L RG+ ++Q+ ++ L G+ Sbjct: 7 RWKLATYDEQLAASIAADCQLTPLVSKLLVIRGIDTSQKARDFLQAGPELFHDPFLLDGM 66 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 E++V + A + I + GD+DADG +ST+L V +R LG + DY +PNRF +GYGL Sbjct: 67 EQSVHRIQQAIQRQEPICIYGDYDADGVSSTSLMVHLLRQLG-AVFDYYIPNRFTEGYGL 125 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + + H G +LI+TVD GIS+ V +A LG+ VIVTDHH P +P A A+INP Sbjct: 126 HKDALAHLHQSGYKLIITVDTGISAVEQVAYANQLGLDVIVTDHHEPPAVIPEAFAVINP 185 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 C++P LAGVGVAF + AL L DL ALGT+AD+ Sbjct: 186 KKPGCSYPFDMLAGVGVAFKVGHALLK---------------EPPLHLADLAALGTIADL 230 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 VPL NRIL G+ R+ + G++AL+ V +L+A +GFALGPRLNA+GRL Sbjct: 231 VPLVDENRILARAGLKRLNHTR-NLGLQALIRVCGLADTELSAGHVGFALGPRLNASGRL 289 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 + V LL ++ EA A LD LN+ R+EI M EA+ + +L Sbjct: 290 ETAESAVKLLTTSDMDEAEKCAQALDDLNRERQEIVAAMTEEAVQMVNELYPPDQN--NV 347 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLD 416 L + W+ GVVGI+ASR+ E F+RP I + GT KGS RSI G M + L Sbjct: 348 LVLAKEGWNVGVVGIVASRLVELFYRPTIVLGIDPEKGTAKGSARSIAGFDMYEGLTACK 407 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 + +GGH MAAG++L + L +Q+ EL EWL D +S E Sbjct: 408 E----WLPHYGGHTMAAGMTLPVENLDLLRQKLNELAGEWLSSEDFTPMTKVDVAMSMEE 463 Query: 477 MTMEVAQLLRDAGPWGQMFPEPL-FDGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGI 533 +++ A+ L P+G P PL R +G + HLK + G LD I Sbjct: 464 ISLTAAEQLEQLAPYGMGNPTPLVLLEEVETQGMRTIGRDDNHLKCTLNKA--GTSLDAI 521 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 FN + +L +NE+ GNR Q+ I ++ Sbjct: 522 GFNWAHVTKRVTPKARFHVLGELSVNEWNGNRKPQLTIRDL 562 >UniRef50_UPI0000E0E6D4 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E6D4 Length = 593 Score = 650 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 280/554 (50%), Positives = 388/554 (70%), Gaps = 4/554 (0%) Query: 24 PLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDAD 83 +L ++ RG+ S EL K +L + QL+G++ AVE+L+ + +I+++GDFDAD Sbjct: 40 DILSAIFLHRGIESLDELATGAKDLLHFNQLNGIQAAVELLFTGLQSQQKIVIIGDFDAD 99 Query: 84 GATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGA-QLIVTVDNGISS 142 GATSTAL +LA+R LG ++ YLVPNRF+ GYGLSPE+VD A + A +++TVDNGI+ Sbjct: 100 GATSTALCMLALRDLGFHSVQYLVPNRFDFGYGLSPEIVDVAIEQYAPDILLTVDNGIAC 159 Query: 143 HAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLAL 202 HAGV HA++ G+ VI+TDHHLPG++LP A+AI+NPN C F SK LAGVGVAFY++ A Sbjct: 160 HAGVAHAKAHGLKVIITDHHLPGESLPNADAIVNPNQHYCEFGSKHLAGVGVAFYVLSAF 219 Query: 203 RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRP 262 +T L GWF + A PNLA+ LD+VALGTVADVV LD NNRI +QG+ RIRAG+CRP Sbjct: 220 KTHLLSVGWFPDPARA-PNLAQYLDIVALGTVADVVKLDKNNRIFVYQGVQRIRAGRCRP 278 Query: 263 GIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 322 GI+ALL+VA++ K+ A+DLGF LGPRLNAAGRL+DM+ G+ LL D+ AR +A+ L Sbjct: 279 GIRALLDVASKAPDKVTATDLGFILGPRLNAAGRLEDMAQGIECLLADDYDTARGMAHTL 338 Query: 323 DALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFH 382 D+LN+ R+EIE M+ +A ++ TLP GL +Y ++HQGV+GILA RIKE+ + Sbjct: 339 DSLNRQRREIEGQMREQAEAALASIQLDDATLPDGLVLYDADFHQGVIGILAGRIKEQHY 398 Query: 383 RPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKF 442 RP + FA D LKGS RSI G+H+RD + ++T +P ++ KFGGHAMAAGLS+ Sbjct: 399 RPTVVFAQQDDHELKGSARSIPGVHIRDVFDEINTRHPHIIKKFGGHAMAAGLSINVQYI 458 Query: 443 KLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG 502 F F ++ +++ + +++SDG LS MT++ A L AGPWGQ F EP+FD Sbjct: 459 DEFTTAFHSVLAKYMAQVPNEAQILSDGQLSSRNMTLDFAHTLVQAGPWGQGFEEPIFDN 518 Query: 503 HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFR 562 F L+ QR+VG++HLK++++ +D IAFN+D WPD V+ V +AYKL+INEFR Sbjct: 519 IFELVSQRVVGQKHLKMVLKLDQ--VTVDAIAFNIDVNTWPDLNVKRVHVAYKLNINEFR 576 Query: 563 GNRSLQIIIDNIWP 576 G +S+Q ++ P Sbjct: 577 GQQSVQCMVVKFGP 590 >UniRef50_UPI0001694BF0 YrvE n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694BF0 Length = 813 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 189/584 (32%), Positives = 304/584 (52%), Gaps = 34/584 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSGV 57 + Q V + L L RL A RG+ + + E + G + + Sbjct: 7 RWQTGCAESSVVQKLAEAHHLDTLTARLLALRGITTPEAAESFLHSRQDGFHDPFLMKDM 66 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 +KAV+ + A I + GD+DADG TST+L + +R + + DY +P+R +GYGL Sbjct: 67 KKAVDRIRLAVEHKEFIRIYGDYDADGVTSTSLVMFLLRKI-KARFDYYIPHRVREGYGL 125 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + + V++A G LI+TVD G+S+ V + + LG+ VIVTDHH P D P A++NP Sbjct: 126 NRQAVEKAAEDGVDLIITVDTGVSAVEQVTYIQELGMDVIVTDHHEPPDISPQPLALVNP 185 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 DC +P K LAGVGVAF L AL + + ELL+LVA+GTVAD+ Sbjct: 186 KQADCPYPFKHLAGVGVAFKLAHALLDRVPE---------------ELLELVAIGTVADL 230 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 +P NR + G+ R++ PGI+ALL++A ++Q++ ++ LGFA+GPRLNA+GRL Sbjct: 231 MPFHGENRTIVKMGLKRMQQS-AFPGIRALLKIAGIESQQVTSTHLGFAVGPRLNASGRL 289 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 + V LL+ + G A LA LD LNQ R+ I + + EAL + + + +T Sbjct: 290 GSANNSVELLITGDSGRANELAQLLDELNQERQRIVREINEEALAIAAEQVQKGNTF--- 346 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLD 416 L + P+W++GV+GI+AS+I E ++RP I F+ + G KGS RSI+ M + L Sbjct: 347 LVVAKPDWNEGVIGIVASKIVETYYRPTIVFSMNDESGLAKGSARSIESFDMYENLTACR 406 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 L + FGGH AAG++++++ ++ L P L + +D + Sbjct: 407 EL----LEHFGGHRSAAGMTIKQEHIDALHRQLDHQAKALLGPDDLVPVIRADAACHLKD 462 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPL--LD 531 + + + L+ P+G P P F + RL RL+G ++H+K+++ G ++ Sbjct: 463 VPLGWIEQLQKLEPFGASNPSPQFIVENLRLTDLRLLGRDKKHMKLVLSESQGESTVQIE 522 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + F + + + +L INE+ G R Q+ + ++ Sbjct: 523 ALGFGKAHLSELISPTARLDVLGELGINEWNGIRRPQLTLKDLR 566 >UniRef50_A6TQN7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TQN7_ALKMQ Length = 841 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 195/587 (33%), Positives = 309/587 (52%), Gaps = 31/587 (5%) Query: 1 MKQQ-IQLRRREVDETADLPAELP--PLLRRLYASRGVRSAQELERS----VKGMLPWQQ 53 MK++ + E + EL P ++ +R V +E +R ++ + Sbjct: 1 MKRKIWTYKDYNEIEIKKMSEELGVLPFTAQILTNRKVIDTREAKRFIDSSLEQLHDPFL 60 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L ++KAV+ + A ++ +I + GD+D DG +ST++ + +++ S +DY +P+R ++ Sbjct: 61 LKDMKKAVDRIQEAIQKNEKIWIYGDYDVDGVSSTSIMLQYFKTIDFS-VDYYIPDRVQE 119 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG++ E + +RG LI+TVD GI+S + A SL I +I+TDHH +P A A Sbjct: 120 GYGINQEAIQLIKSRGGNLIITVDCGITSFEEIALANSLSIDMIITDHHECQGAVPEAYA 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 IINP DC++P S+ G G+A L+ AL + + +D+VA+ T Sbjct: 180 IINPKQHDCSYPFDSICGCGLALKLIQAL----------TPKEEFKSTIYLYIDIVAIAT 229 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 VAD+VPL NRI G+ + K G++ALLEV +KL A +GF+LGPR+NA Sbjct: 230 VADIVPLVDENRIFVKNGLQYMPDTK-NLGVQALLEVCKLKDRKLNAGHIGFSLGPRINA 288 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGR+ GV LL + E + LA+ L+ NQ R+EIE + EA+ + E + Sbjct: 289 AGRIGSADSGVKLLTSSDPAEVQQLAHFLNEENQNRQEIEVKILDEAINMIESSGQFN-- 346 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 + L + WH GV+GI+ASRI ER+H+PVI A GD KGS RSI L++ +A+ Sbjct: 347 IDKVLVLAKEGWHHGVIGIVASRIVERYHKPVIILAIEGD-KAKGSARSIPKLNLFEAMN 405 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + L+ LK GGH AAGL+L+ + + F+ + ++V + L P ++ DG LS Sbjct: 406 QCKDLF----LKIGGHEQAAGLTLKSENIEAFRMKINDIVNQTLSPEDFIAQIHCDGLLS 461 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVG--ERHLKVMVEPVGGGPLL 530 + + L + P+G P P F G F ++ R VG +HLK ++ + Sbjct: 462 LDVVEDSLIDELGNLEPYGMGNPSPKFIGYDFTIVDIRAVGVDGKHLK--LKLGSKSKQV 519 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 D I FN ++ L Y + NEFRG +++Q+ I +I + Sbjct: 520 DAIGFNFGDYSDHIEQGDKIHLVYTPEFNEFRGQKNIQLQIKDIKTV 566 >UniRef50_B8CXF2 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXF2_HALOH Length = 814 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 196/581 (33%), Positives = 325/581 (55%), Gaps = 31/581 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSG 56 MK++ Q ++++D + + +L P+L+ + SRG+ E+ R + + + Sbjct: 1 MKKKWQFIKQKLDGSLN---DLEPVLQSILYSRGITDRDEINRFLSCRIQDLHSPFLMKD 57 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + KAV+ + A G +IIV GD+D DG TSTAL L + +DY +PNR ++GYG Sbjct: 58 MGKAVDRILTAIESGEKIIVYGDYDVDGITSTALLFLYFKKRLGYEVDYYLPNRLKEGYG 117 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ E +D+ + L++TVD GIS VE+A G+ VIVTDHH P LP A A+++ Sbjct: 118 LNKEALDKIINKNYDLMLTVDCGISGLEEVEYATRKGLEVIVTDHHQPAKKLPPAIAVLD 177 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P+ +D +P K LAGVGVAF L AL ++ D L L+D+V+LG++AD Sbjct: 178 PHRKDDKYPFKYLAGVGVAFKLCQALEKEIKGHEISD-------FLLRLIDIVSLGSIAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +VPL NRI+ +G+S + + G++ L++ + D + L A +G+ + P LNAAGR Sbjct: 231 IVPLLGENRIIVKRGLSELNDTSNK-GLRVLMDKLSLDGKDLNAGHIGYIMAPPLNAAGR 289 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 ++D S+G+ LL D+I +A+ +AN L LN++R+ E+ + +A+ + EK Sbjct: 290 MEDPSLGIELLTTDSIDKAKEIANRLINLNKSRQAEEEEIFEDAVKMIEKTVDLNKD--K 347 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 G+ + P+WH GV+GI+ASR+ E+++RPVI + DG KGS RSI+GL++ AL+ Sbjct: 348 GIVLASPDWHHGVIGIVASRLVEKYYRPVIMIS-LEDGIGKGSCRSIEGLNIYKALDFCS 406 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 + +L +GGH AAGL++ ++ + F+ F + V L P L + D L P + Sbjct: 407 S----YLLSYGGHEQAAGLAINKEDIEQFRDTFLDYVDSVLSPEDLIPVLKLDSILKPGQ 462 Query: 477 MTMEVAQLLRDAGPWGQMFPEPL-FDGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGI 533 + + + L+ P+G P+P F + + + R VG +HLK ++ L GI Sbjct: 463 INLNFYKTLKQLEPYGVGNPKPRFFLSNMQFNKLRTVGRDGKHLKFTLDKG-----LKGI 517 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 F+ L ++V LA+ L +N + G +++ + ++ Sbjct: 518 GFDFGDKLIEFKN-KKVDLAFYLTLNTWNGAEEVELQLLDV 557 >UniRef50_B0VNC7 SsDNA exonuclease, 5'--> 3' specific , Mg dependent n=13 Tax=Moraxellaceae RepID=B0VNC7_ACIBS Length = 566 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 251/573 (43%), Positives = 365/573 (63%), Gaps = 13/573 (2%) Query: 4 QIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEI 63 +IQ+++R + + +PP + + A RGV+S QELE +K +L + L G++ AV + Sbjct: 3 KIQIKQRPLLTRPEQFQGVPPFIAEILARRGVQSEQELELKLKNLLAPE-LKGLDAAVAL 61 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 + A E +I++VGD+DADGATSTAL +L +R +G + +DYLVP+RF+ GYGL+P + + Sbjct: 62 MDQAIDEQKKIVIVGDYDADGATSTALMMLVLRDMG-AQVDYLVPDRFKYGYGLTPAIAE 120 Query: 124 QAHAR-GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDC 182 AH L++TVDNGISSHAGV+ A +LG+ VI+TDHHL P AEA++NPN C Sbjct: 121 LAHHTYQPDLLITVDNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGC 180 Query: 183 NFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA 242 FPSK+LAGVGVAFY++ L + QG + + + LDLVALGT ADV LD Sbjct: 181 EFPSKALAGVGVAFYVLANLASLRNRQG------KSTSKVTQYLDLVALGTYADVAVLDY 234 Query: 243 NNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSV 302 NNRIL G+ RI+ +CR GI ALL++A R+A + A DLGF LGPR+NAAGR++ M + Sbjct: 235 NNRILVDAGVKRIQQHQCRVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRI 294 Query: 303 GVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYH 362 G+ LL D + A +A +L+ LN R++IE M+ +AL+ + L+ S+ +P L ++ Sbjct: 295 GIECLLADTMETAYPIAQQLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFE 354 Query: 363 PEWHQGVVGILASRIKERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALERLDTLYPG 421 WHQGV+GI+A R+KE+FHRP I FAP DG +KGS RSI G+H+RD +E++ +P Sbjct: 355 ENWHQGVIGIVAGRLKEQFHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPE 414 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 ++ FGGHA AAGL++ ++ F+ F+ F + V +D S+ Q + +DG L + + ++ Sbjct: 415 LVSHFGGHAAAAGLTIRKENFEAFKTVFNDCVA-AMDESIFQATLWTDGELPVSALQLDT 473 Query: 482 AQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL 541 + GPWGQ FP P F+G+F+++ R + E HLK + D IAFN Sbjct: 474 LNWIEQLGPWGQKFPLPQFEGYFKVIDFRWLKETHLK--LRLAIDQYSFDAIAFNAAGRF 531 Query: 542 WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 D V L Y++D N F GN SLQ+ I ++ Sbjct: 532 EFDPMRDHVHLVYEIDRNVFNGNVSLQLRIVHL 564 >UniRef50_A6NR30 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NR30_9BACE Length = 689 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 200/584 (34%), Positives = 299/584 (51%), Gaps = 30/584 (5%) Query: 1 MKQ-QIQLRRREVDETADLPAE-LPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 MK Q LR A + A+ +PPL + +RG+ + ++ + ++ + + Sbjct: 1 MKYRQWNLRAPSPAAQAAMEADGVPPLAASVLCARGLDTVEKAKDFLRSDEDLLWDPFLM 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +++AV + A + I V GD+D DG TST L +RS G + + +P+R E+G Sbjct: 61 KDMDRAVSRIAAALDQNEHIAVYGDYDVDGITSTCLLTDYLRSRG-AKVTPYIPDRMEEG 119 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YGLS V HA+G LI+TVD GI++ A E A SLGI V++TDHH D +P A A+ Sbjct: 120 YGLSCSAVSALHAKGVSLIITVDCGITAVAEAEFAASLGIDVVITDHHECKDRIPTAAAV 179 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 ++P+ RDC +P K LAGVGVA L+LAL ++ L DL A+GTV Sbjct: 180 VDPHRRDCGYPFKHLAGVGVALKLVLAL----------GDKTEESALLRRYADLAAVGTV 229 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 ADV+ + NR + G++ + RPG++ALL A + L + +G+ L PR+NA+ Sbjct: 230 ADVMQVVGENRTIIRMGLAAL-KNTVRPGLRALLHEAGLTERPLTSVSIGYTLAPRINAS 288 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ + LLL + LA EL ALN+ R+ +E + E + + + + Sbjct: 289 GRMGCAGLAAELLLTSDPARGEALARELCALNRERQAVELDIYEECVAMADAMRPED--- 345 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 L + WHQGVVGI+ASR+ E++ P DG KGS RS G ++ ALE+ Sbjct: 346 RPALVLAREGWHQGVVGIVASRLSEKYSCPTFMIC-LQDGKGKGSCRSFGGFNLFAALEQ 404 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 L + FGGH +AAG ++ E+ F++R ELV + ++ + D P Sbjct: 405 CRDL----LEGFGGHELAAGFTILEEHIPAFRERMLELVRSSTGGAAMEAALEVDAEADP 460 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLV-GERHLKVMVEPVGGGPLLDG 532 A +T E L P+G P+P+F + V G RHLK+ V GG D Sbjct: 461 ALLTQEGVLSLDLLEPYGTGNPKPVFSMSGCTVTNASEVGGGRHLKLKV--TKGGRSFDA 518 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 I F+V A V LA+ INEFRG RS+Q+ + ++ P Sbjct: 519 IFFSVSLAEAGLAPGDRVDLAFSPQINEFRGWRSVQLQLIDLRP 562 >UniRef50_C0N9A7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9A7_9GAMM Length = 585 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 263/577 (45%), Positives = 392/577 (67%), Gaps = 6/577 (1%) Query: 4 QIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEI 63 Q+++++R+ DLP P +RR+ A+RG++ A++L + + QQ+ G+++AV I Sbjct: 3 QVEIKQRDSSGWQDLPDAWPDCIRRIMAARGIKQAEQLFFELANLPRPQQMLGMDQAVAI 62 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 + A ++ ++ VV DFD+DGATS AL++ +R++G +I+++VPNRF GYGL+PE++D Sbjct: 63 MVEALQKQWKVTVVADFDSDGATSCALAIRGLRAMGLQHINFIVPNRFIHGYGLTPELLD 122 Query: 124 QAHA--RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 L++TVDNGI++ AGVE A+ GI V+VTDHHL G+ LP A+AI+NPN Sbjct: 123 DIPNTTEQPDLLLTVDNGIAAVAGVEAAQQRGIKVLVTDHHLAGEVLPTADAIVNPNQAG 182 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 FPSK+LAGVGV FYL+L LR LR+Q WF ++N+ P L++ LD+VALGTVADVVPLD Sbjct: 183 DAFPSKNLAGVGVCFYLLLGLRQALREQDWFMQQNLDEPKLSDWLDIVALGTVADVVPLD 242 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NR L G+ RIR+G+ GI+AL ++A R+ KL + DL F++ PRLNAAGR++DM Sbjct: 243 KLNRTLVDIGLKRIRSGRACAGIRALSQIAGRETDKLVSPDLAFSIAPRLNAAGRMEDMG 302 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 +G+ LLL D +A +A +LD +N R+ +EQ MQ +ALT+ +KL T+ G +Y Sbjct: 303 LGINLLLTDEWQDALSIAAQLDQINLERRGVEQQMQQDALTMLDKLSLETATVAPGYCLY 362 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 PEWHQGV+G+LASRIKE+ HRPVIAFAP +G +KGS RSI G+H+RD L R+ P Sbjct: 363 DPEWHQGVIGLLASRIKEKMHRPVIAFAPGNEGEIKGSARSIAGIHIRDVLARIAAQNPT 422 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 M+ +FGGHAMAAGL+L+ + F+ F ++T+ +D ++ Q ++ +DG LS E+T+++ Sbjct: 423 MLQRFGGHAMAAGLTLKLNDLDNFRVAFEAVLTDSVDAAVYQQQLATDGELSHHEITLQL 482 Query: 482 AQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGER--HLKVMVEPVGGGPLLDGIAFNVDT 539 A+ L A PWGQ F EP F G F + RLVG+ HL++ ++ +G + +AF Sbjct: 483 AEQLPQAAPWGQGFEEPRFHGLFDVKSWRLVGQEADHLRLSLQ-LGDSREITAMAFRQQK 541 Query: 540 ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 W + G + + + Y+L +NEFR +++Q +ID++ P Sbjct: 542 PEWLERGSK-ILIRYRLAVNEFRATKTIQFLIDDLLP 577 >UniRef50_C8VZX5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZX5_DESAS Length = 907 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 196/587 (33%), Positives = 312/587 (53%), Gaps = 33/587 (5%) Query: 1 MKQQ--IQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELERS----VKGMLPWQ 52 M++Q ++ ++ + + EL P+L +L +RG+ + ++++ + + Sbjct: 1 MQKQKIWHIKENDLATQSIITKELGVSPILAQLMVNRGLGTVEQIKNFMEYDLSSLNNPY 60 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 L ++KAV + A +I++ GD+D DG T TAL V A+R L +++Y +P+R + Sbjct: 61 ILQDMQKAVNRIIEAVNRSEKILIYGDYDVDGITGTALLVGALRRL-TDHVNYYIPHRIK 119 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSL-GIPVIVTDHHLPGDTLPAA 171 +GYGL E V++A +G LI+TVD GIS V+ + +I+TDHH P LPAA Sbjct: 120 EGYGLHKEAVEKAAGQGYSLIITVDCGISGKEAVDWSVQNTKTDIIITDHHEPPPVLPAA 179 Query: 172 EAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 A+INP +DC +P K LAG+GVA L+ A+ + N++ E LD+V L Sbjct: 180 LAVINPKRKDCEYPFKELAGIGVALKLVQAV---------YAAANMSSETWKEYLDIVCL 230 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRL 291 GT+ADVVPL NRIL G+ + + G+ AL++ + + + +GF L PRL Sbjct: 231 GTIADVVPLLGENRILVKYGLPYLTKTSKK-GLIALIKASGLRGD-ITSGQVGFVLAPRL 288 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NAAGRL D + V LLL ++ +A +A LD N+ RK +E EA+ + E+ + Sbjct: 289 NAAGRLGDPFMAVELLLTEDEAQANQIAVVLDEKNRKRKSVEDAALKEAIQMIEREISFK 348 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 + L + EWH GV+G++ASR+ ER+++PV+A A G+ KGS RSI G ++ A Sbjct: 349 QS--KVLVLASEEWHPGVIGLVASRLVERYYKPVLAIALDGE-QGKGSARSIPGFNLYQA 405 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 LE + +GGH MAAG SL+ + F + E + LL + DG Sbjct: 406 LEHC----GKNLSGYGGHTMAAGFSLKRESLDNFIREINVYADEVISEDLLVPVMNLDGI 461 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGE--RHLKVMVEPVGGGP 528 S ++T +V + P+GQ P PL +++ + VG+ HLK+ + G Sbjct: 462 FSLNDITEQVIAEIEKLAPFGQANPGPLLCCPEIQVVNFKGVGKEGEHLKIKIRKENG-- 519 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 +DGI FN+ + V LA+ +INE++G R + + I +I Sbjct: 520 FIDGIGFNLASYSEMLATAERVNLAFVPEINEWQGKRHISLRIKDIQ 566 >UniRef50_C6D7X7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7X7_PAESJ Length = 677 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 198/583 (33%), Positives = 294/583 (50%), Gaps = 35/583 (6%) Query: 5 IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKA 60 + E +PPL+ +L RG + + E ++G + L G+ +A Sbjct: 13 WNKEDEQQAEQLSAQLGIPPLVAKLLVQRGYKDKEAAETFLRGGEDRLHDPYLLIGMTEA 72 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 V + A G I + GD+DADG +ST+L + R LG + DY +P+R +GYGL+ Sbjct: 73 VARIRQAADNGEFIRIYGDYDADGVSSTSLLIHVFRELGYT-FDYYIPHRASEGYGLNTG 131 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 +D A A G +LIVTVD GIS++ VE+A+SLGI ++VTDHH P + +P A A++NP Sbjct: 132 AIDIAAADGVRLIVTVDTGISAYEQVEYAKSLGIDIVVTDHHEPPERIPDAVAVVNPKRE 191 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 DC +P K LAGVGVAF L AL E D+V+LGT+AD++PL Sbjct: 192 DCPYPFKGLAGVGVAFKLATALMGRAP---------------MEWTDIVSLGTIADIMPL 236 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 NR+L G++R++ G +AL E + ++ ++ + F + PR+NAAGRLD Sbjct: 237 TDENRVLVRAGLARLQNTD-NTGFRALSEACGIELDQVTSTTVAFGMAPRINAAGRLDHA 295 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTL----CEKLERSRDTLPG 356 V LL + EA A+ LD LN+ R+ I G+ EA + + P Sbjct: 296 KRAVELLTTGDYDEAIRAASSLDVLNKERQRIVDGIVKEAELQWQGKRDAARAAGRPEPA 355 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERL 415 + + W+ GV+GI+AS+I ER+++PVI D G KGS RSI+G + AL Sbjct: 356 VIVLAGEGWNVGVIGIVASKILERYYKPVIVLGIDPDSGMCKGSARSIEGYDLHAALTEC 415 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 D L + +GGH AAG+SL D+ F+++ GEL EWL + D S Sbjct: 416 DEL----LDHYGGHQAAAGMSLRRDQLPAFEEKLGELAMEWLTEQDWIPKTAIDLVCSVG 471 Query: 476 EMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDG 532 + ++ L P+G P P L L R +G+ RHLK+ + G LD Sbjct: 472 DASVHTIGQLALLEPFGAGNPSPRLLLQSAELSDYRTMGKDARHLKLSLR--SGRTSLDA 529 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + F + V L +L INE+ G R Q+ I +++ Sbjct: 530 VGFGLGELSNQLQSGLPVDLVGELSINEWNGQRKAQLHIHDLY 572 >UniRef50_Q183I1 Putative single-stranded-DNA-specific exonuclease n=8 Tax=Clostridium RepID=Q183I1_CLOD6 Length = 816 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 178/583 (30%), Positives = 306/583 (52%), Gaps = 30/583 (5%) Query: 1 MKQQIQLRRREVDETA-DLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLS 55 MK+ I + +++E+ + P + ++ +RG+ + ++ + S+ + + Sbjct: 1 MKKWILKYKGKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLRDPFLMK 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++KAV+ + A + +I + GD+D DG +ST++ L +S+G N+DY +PNR E+GY Sbjct: 61 DMQKAVDRIKLAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGY-NVDYYIPNRLEEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G++ + + +RG LI++VD GI+S + V A LGI VI+TDHH +P+A A+I Sbjct: 120 GINEDAIKLISSRGCDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQSEIPSAFAVI 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP DCN+P SL G GVAF ++ AL + ++ L++V L T+ Sbjct: 180 NPKQEDCNYPFDSLCGCGVAFKMIQAL----------TPKEEFKTSMYNYLEIVTLATIC 229 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL NRI+ G+ ++ GK G++ L++V ++ K+ +S +GFA+GPR+NA+G Sbjct: 230 DIVPLIDENRIIVKNGLKSMKEGK-NIGLRELIKVCGVESDKIGSSHIGFAIGPRINASG 288 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RL +GV L + EA +A+ L+ N R+ IE M EA + + R D Sbjct: 289 RLGYSYLGVELFTTQSQEEAVEIASILEEKNNERQMIEAKMYHEAEEMLKSNSRYNDD-- 346 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 L + W G++GI+AS++ E++++P I +G GS RSI+G ++ +AL + Sbjct: 347 KVLVLAKEGWQHGIIGIVASKLTEKYYKPTILLGIE-NGEATGSARSIKGFNIFEALIKC 405 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L M KFGGH AAGLSL+ D ++ + L + V + L Sbjct: 406 KDL----MTKFGGHEQAAGLSLDSDNVEILANEINKFADYNLTEDDMIENVNVEFELQEN 461 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ-RLVGER--HLKVMVEPVGGGPLLDG 532 + + + + L P+G P P F +L+ +++G+ HLK+ +E + Sbjct: 462 VINLNLVEELHKLEPFGLNNPNPRFIVRNYILKDLKVIGKNQQHLKLSIEKEKS---YEC 518 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 I FN+ +V + ++LD N + GNR +Q ++ +I Sbjct: 519 IGFNMSHLKSMYKVGDKVDVLFQLDENNYMGNRKVQFLLKDIR 561 >UniRef50_A8VTW9 Holliday junction DNA helicase RuvB n=2 Tax=Bacillus RepID=A8VTW9_9BACI Length = 785 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 197/584 (33%), Positives = 304/584 (52%), Gaps = 36/584 (6%) Query: 2 KQQIQLRRREVDETADLP--AELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLS 55 K + + D+ +L L + R + R + +E+ + + +L L Sbjct: 5 KSKWLVPDWSEDQVGELAEATGLSNIAARFFVQRRKTTKEEVMSFLHMDHRSLLDPFLLY 64 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 +++AV+ + A + RI++ GD+DADG TSTA++ L ++ LG + + Y +PNRF +GY Sbjct: 65 DMDRAVDRIRRAIEKQERILIFGDYDADGVTSTAITYLTLKRLG-AEVSYYIPNRFTEGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G + QA LI+TVD GIS E A+ G+ +I+TDHH P LP A A++ Sbjct: 124 GPNEGAFRQAAEESVSLIITVDTGISGVHEAEVAKECGMDLIITDHHEPPPVLPDAFAVV 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP C++P+ +LAG GVAF L AL + + +L DLVA+GT+A Sbjct: 184 NPKQEHCSYPNPNLAGAGVAFKLAHALTGEIPE---------------DLFDLVAIGTIA 228 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+V L+ NR L G+ IR G R G+KALL++A + +L +GF +GPRLNAAG Sbjct: 229 DLVSLEGENRYLAKAGIEAIRQGP-RAGVKALLDIAGAEVSELNEETIGFMIGPRLNAAG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RLD ALL+ +N EA+ LA +D LN+ R+ I + + EA+ E +P Sbjct: 288 RLDSADPAAALLITENPHEAKDLAELIDGLNKERQSIVKEIAEEAIEQVEA-----QGVP 342 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALER 414 + + W+ GV+GI+ASR+ ER++RPVI + + KGS RSI+G M +L Sbjct: 343 SVIIVGAEGWNPGVIGIVASRLVERYYRPVIVLSFDQEKEQAKGSARSIEGFDMFQSLST 402 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + P FGGH MAAGL++ + ++R L E + ++ D P+S Sbjct: 403 CRDILP----HFGGHPMAAGLTMSLSDVEELRERLIRLANESMSDDDWIRKLKVDLPVSI 458 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLD 531 E+T+ + L+ P+G P P + ++ R +G HLK+ V G G LD Sbjct: 459 EEVTLNAIEDLQAMAPYGIGNPAPKVMLEDVGIVSMRRIGATGDHLKLSVNNKGSGIELD 518 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 IAF A + + + L KL INE+ G R Q +++++ Sbjct: 519 AIAFGKGDAADEISKLSPLSLVGKLGINEWNGKRKPQFLVEDMQ 562 >UniRef50_B6SE72 RecJ n=2 Tax=Kingella RepID=B6SE72_9NEIS Length = 570 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 277/579 (47%), Positives = 389/579 (67%), Gaps = 18/579 (3%) Query: 1 MKQQIQLRRREVD---ETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGV 57 M Q+ R V + A A PPLL +LYA+R V+SA EL S+ ++P+ QL Sbjct: 1 MSHTKQIATRPVVAEVQAALQNAGTPPLLAQLYAARHVQSADELGDSLSQLIPYTQLKNC 60 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 E A + L A + +I+++ D+DADGAT+ ++ + +R++G + +D+ VPNRFE GYGL Sbjct: 61 EAAAQRLATAIEQRQKILIIADYDADGATACSVGIKGLRNMG-AVVDFFVPNRFEHGYGL 119 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 +PE+ D A GAQLI+TVDNGISS GV A++LGI +VTDHH G ++P I+NP Sbjct: 120 TPELADIAAQMGAQLILTVDNGISSQEGVARAKALGIDTVVTDHHTAGSSIPDC-IIVNP 178 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 N R C+FPSKSLAGVGV FY+++ALR LR +G+F + + PNL LLDLVALGTVADV Sbjct: 179 NQRGCDFPSKSLAGVGVIFYVLMALRAQLRSRGYFQQAGLPEPNLGNLLDLVALGTVADV 238 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 VPLD NNRIL QG+ RIRAGK GI+AL E+A RD +K D+GFALGPR+NAAGRL Sbjct: 239 VPLDHNNRILVSQGLKRIRAGKMSHGIRALFEIARRDTRKAQPFDMGFALGPRINAAGRL 298 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 DDMS+G++ LL DN+ A+ +A+EL+ LNQTR+EIEQGM E L LC + S T Sbjct: 299 DDMSIGISCLLSDNLPYAQQIASELNQLNQTRQEIEQGMLQEVLALCPNVLPSSQTT--- 355 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 L++YH ++HQGVVGI+ASR+K+RF+RPV FAP+ DG L+GSGRSI GLH+RDAL+ + Sbjct: 356 LSVYHEQFHQGVVGIVASRLKDRFYRPVFVFAPSDDGELRGSGRSIAGLHLRDALDMVAK 415 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 P M++KFGGHAMAAGL+L + +F F Q F ++V ++ +L ++DG L +++ Sbjct: 416 RCPDMIVKFGGHAMAAGLTLRKHRFDEFCQVFEDVVQGLVNEDILSQTYLTDGSLHGSDI 475 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAF 535 T+E A L+ WGQ FP P F F +++Q+ +G+ +H K ++ G + + + Sbjct: 476 TLEQADLISR-QVWGQNFPPPSFSDEFDVVRQQFMGKEQKHKKAWLQ--KDGYEFEAMFW 532 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + L ++++ Y+ +NE+ GN+ LQ+ +D Sbjct: 533 RCEDEL-----PNKIRIVYRPTVNEWNGNQELQLYVDYW 566 >UniRef50_A3DF49 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Clostridium thermocellum RepID=A3DF49_CLOTH Length = 827 Score = 634 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 186/585 (31%), Positives = 303/585 (51%), Gaps = 28/585 (4%) Query: 1 MKQQIQLRRREVD----ETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQ 52 MKQ+ ++ E A + LL ++ SRGV ++ + + Sbjct: 1 MKQRRLWSMNDLSDEKVEKLSKKAGISKLLAGIFLSRGVDDPDYIKDFLNPSLDKLHDPF 60 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 +L +EKAV+ + A R+ +I++ GD+D DG TST++ R +++ Y +P+R Sbjct: 61 ELRDMEKAVDRIVKALRQNEKILIYGDYDVDGITSTSILYDFFRR-QNADVCYYIPDRLN 119 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 +GYG+S ++ L++TVD GI++ V++ I +I+TDHH +++P A Sbjct: 120 EGYGISMAAAEKMPEMDVDLVITVDCGITAFEEVKYITDNNIDIIITDHHECRESVPDAL 179 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A++NP+ DC +P K LAGVGVA+ L+ AL + G+ + LDLVALG Sbjct: 180 AVVNPHRFDCAYPFKELAGVGVAYKLLEALSKKMNIPGFE----------RQYLDLVALG 229 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 292 TVADVVPL NRI+ G+ I G+++L++VA + +++ +GF L PR+N Sbjct: 230 TVADVVPLLGENRIIVKYGLPMIEKT-SNVGLRSLIKVAGIENKEINTFLVGFVLAPRIN 288 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 AAGR+ D S V LL DN EA +A ELD N RK+ E + EA+ + E Sbjct: 289 AAGRIGDASRAVRLLTTDNEEEALEIAKELDEQNIFRKQNELEIMEEAVNIIETGI--DL 346 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 + + WH GV+GI++S+I ER++RP + + G+G KGS RSI+G ++ +AL Sbjct: 347 QREKVIVVAGERWHHGVIGIVSSKITERYYRPSVLISVDGEG-AKGSARSIEGFNLFEAL 405 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 ++ K+GGH AAGL+L+ + F++ E LD L + D + Sbjct: 406 VHC----GKVLEKYGGHEQAAGLALKPENIDEFRRMINEYADSVLDEDDLVPRMKIDVRI 461 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLD 531 + +MT+E + L+ P+G+ P P+F + ++ + R VG+ + G L+D Sbjct: 462 TKEDMTLENCKELKLLEPFGESNPPPVFRYDNLKVHEIRPVGQDSRHAKIRFDDNGTLID 521 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 I FN V + ++IN + G ++Q+ I +I P Sbjct: 522 AICFNGGGLTDCYELSDIVDVVCSMEINLWNGRENVQLNIKDIRP 566 >UniRef50_UPI0001789928 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789928 Length = 800 Score = 633 bits (1634), Expect = e-180, Method: Composition-based stats. Identities = 196/583 (33%), Positives = 311/583 (53%), Gaps = 34/583 (5%) Query: 2 KQQIQLRRRE--VDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM----LPWQQLS 55 K + ++R + E LPP++ L ASRG++SA++ + G + Sbjct: 5 KYEWRIREAASTITERLAHDLSLPPIVASLMASRGIQSAEDGREFLYGTFELTHDPYLMQ 64 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 G+ +AV + A + I++ GD+DADG +ST+L + MR LG S D +P+R +GY Sbjct: 65 GMREAVPRIRKALEDREHILIYGDYDADGVSSTSLMIHLMRYLGASY-DIYIPHRSNEGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL +D AH +G L++TVD GIS+ + +A SLGI VIVTDHH P + LP A A+I Sbjct: 124 GLHNHALDWAHQQGVSLVITVDTGISAVEQIAYANSLGIDVIVTDHHEPPEVLPEAYALI 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP + C +P K LAGVGVA+ L AL E L +V++GT+A Sbjct: 184 NPKIPTCPYPFKGLAGVGVAYKLAQALVG---------------DPPEEWLQIVSIGTIA 228 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D++PL NR+L G+ +R + GI++LLEV+ +++ A ++ F++ PR+NA+G Sbjct: 229 DLMPLTGENRVLVKHGIESMRRTRY-EGIRSLLEVSGIHVEQVTAVNVAFSMAPRINASG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RLD V LL ++ EA LA ELD LN+ R+++ + + EAL + + R ++ +P Sbjct: 288 RLDHAGRAVTLLTTEHREEAERLAWELDGLNKDRQQVVENIVQEALGMVQNRWRGQE-IP 346 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALER 414 + + W+ GVVGI+AS+I ERF+RPV+ + G KGS RSI G + AL Sbjct: 347 PVIVLAGEGWNVGVVGIVASKILERFYRPVVILGIDPETGNCKGSARSIPGFDIYAALLS 406 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + M FGGH AAG+SL D+ F+Q + L+ L +D S Sbjct: 407 CKDV----MDHFGGHPSAAGMSLHRDRLAAFEQGLHRYAEDALEAEHLIAVCEADLEASL 462 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGE--RHLKVMVEPVGGGPLLD 531 +E+++ + + + GP+G P + R +G+ +HLK+ ++ ++D Sbjct: 463 SEVSVPILEQMEQLGPFGMANAVPKIVFRDVVIKDVRKIGKEGKHLKLRLQQKRE--VID 520 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 I+F V + +L +NE+ G+R +Q++I +I Sbjct: 521 AISFGWGHLADILPVGSVVDVLGELSVNEWNGSRKVQLMIQDI 563 >UniRef50_B1HV84 Single-stranded-DNA-specific exonuclease recJ n=2 Tax=Bacillaceae RepID=B1HV84_LYSSC Length = 773 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 198/584 (33%), Positives = 311/584 (53%), Gaps = 35/584 (5%) Query: 2 KQQIQLRRREVDETADLP--AELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLS 55 K++ Q+ R +V+ L +L + ++ A+RG + + E + + + Sbjct: 5 KKRWQVERPDVELVQALQNDLQLSAIAAKILAARGCETTADAESLLNMTEANVHDPFLMH 64 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 G+ +AV + A G +I+V GD+DADG TST + + + LG +N+ + +PNRF GY Sbjct: 65 GMAEAVARIEQALDNGEKILVYGDYDADGVTSTTVMLNVLLDLG-ANVSFKIPNRFIHGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G + +A+ G QLI+TVDNGIS + A+ LG+ VIVTDHH PG+ LP A+ I+ Sbjct: 124 GPHEALFREAYEEGVQLIITVDNGISGIEPIRVAKELGLDVIVTDHHEPGEELPPADIIL 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P L + ++P LAGVGVAF L AL L L++ VA+GTVA Sbjct: 184 HPRLPEGHYPFGELAGVGVAFKLAHALYGELPTH---------------LIEYVAIGTVA 228 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL NR L +G+ +R P ++A+ ++A+ + K++ +GF GPRLNA G Sbjct: 229 DLVPLVDENRYLVKRGIEEMRRSLS-PWVQAMCDIASTEQAKISEETIGFYFGPRLNAVG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RL + S GV LL+ ++ +A LA +L+A N RK+I + + EA+ L E ++ D+L Sbjct: 288 RLGEASPGVELLMAEDSVKATALAKQLNASNTERKDIVKNITEEAIALIESEKKISDSL- 346 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALER 414 L + W+ GVVGI+ASR+ E+++RP I + D GT KGS RSI G H+ + L + Sbjct: 347 -VLVVAGEGWNAGVVGIVASRLVEQYYRPTIVLSLDPDKGTAKGSARSIDGFHLYNELAK 405 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 ++ FGGH MAAG++L + + R L L V D PLS Sbjct: 406 ----NRDILPHFGGHPMAAGMTLSIEHVDELRSRLDTQARACLTEEHLTPVVHIDIPLSL 461 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVG--ERHLKVMVEPVGGGPLLD 531 E++ + + + GP+G FP+P++ + R +G E H+K +E G LD Sbjct: 462 DEISADAIEEIASLGPFGTDFPKPVYVLEDVEISSMRKIGAAENHIK--MELTNGCDKLD 519 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + F+ +V L INE++G + Q +I+++ Sbjct: 520 SVGFHKGHLHDELTYGIKVSFIGDLQINEWQGRKKAQFMIEDVQ 563 >UniRef50_C4V0G0 Possible single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Selenomonas RepID=C4V0G0_9FIRM Length = 671 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 201/583 (34%), Positives = 313/583 (53%), Gaps = 33/583 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 +K+ I + + + + P++ +L RG+R+A+E + ++ Sbjct: 11 LKEWIVAQHTDEGDALAAEIGVTPIIGQLLWQRGIRTAEEARAFLHPADTPFHDPFLMAD 70 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +E+ E + A R I++ GD+D DG T+TAL + ++R+LG N+ Y +PNRF +GYG Sbjct: 71 MERGAERVLCAVRRDEPIVIYGDYDVDGMTATALLMRSIRTLG-GNVSYYIPNRFTEGYG 129 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ + + Q G +L+VTVD GI+S V A G+ +++TDHHLPG LP+A A++N Sbjct: 130 LNADALQQIAGEGCRLLVTVDCGIASVDTVAEATG-GMDIVITDHHLPGQMLPSAYAVMN 188 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P+ DC +P K+LAGVGVAF L+ AL R++ + AE LD+ ALGTVAD Sbjct: 189 PHRADCAYPEKNLAGVGVAFKLVQALWQMEREESF-----------AEYLDIAALGTVAD 237 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +VPL NR + G+ ++ C GI+AL+EVA + + +GF L PRLNAAGR Sbjct: 238 LVPLVGENRKIVQMGLRQMAEHPC-VGIRALIEVAGLADKSINTGQVGFQLAPRLNAAGR 296 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L+ G LLL ++ A +A EL+ALN R+++EQ + EA E+ Sbjct: 297 LETARHGAELLLTEDTACASRMAGELNALNTERRDLEQDILAEA----ERQLADFTPDVP 352 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 + + EW+ GV+GI+ASR+ E+++RP I D KGS RSI GLH+ +AL Sbjct: 353 AIVVAGEEWNAGVIGIVASRLVEKYYRPSIVLTRRDD-VYKGSCRSIAGLHLYEALSACR 411 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 +++FGGHAMAAGL+L ++ F++ F E V L +V +PA+ Sbjct: 412 DT----LIQFGGHAMAAGLTLSCERLSDFRRAFSEAVRTRLTAQDFIPKVAVSALAAPAD 467 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGI 533 T+E + L P+G P P+F + R + +G +HL++ + + + Sbjct: 468 WTVETVEELALLEPYGMGNPRPIFGVRNVRPQKASSIGAEGKHLRMDIGTREHH--ITAL 525 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 +N LAY INE++G RS+Q ++D + P Sbjct: 526 YWNAGDLATVLTEEDS-DLAYTPSINEWQGERSVQCMVDTVTP 567 >UniRef50_B3E2R5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Geobacter lovleyi SZ RepID=B3E2R5_GEOLS Length = 586 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 206/582 (35%), Positives = 322/582 (55%), Gaps = 25/582 (4%) Query: 1 MKQQIQLRRREVDETADLPA--ELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 M +Q L++ + A L A L + + +SRG+ +++ + ML + Sbjct: 14 MHKQWILKQTDPATVAALSAATGLSAVTASILSSRGLTEPEQVASFLSPTLAAMLDPFLM 73 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +G+E+AV L A + + GD+D DG ++TAL V +R++G N+ Y +PNR EDG Sbjct: 74 AGMEQAVVRLVAARAAKETVCIYGDYDVDGISATALLVSGLRAMGL-NVTYHIPNRMEDG 132 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YGL+ + + RG +L ++VD G+++ RS+G+ +I+TDHH P D LP A A+ Sbjct: 133 YGLNGDALRLIKERGIELAISVDCGVTAIEEAILCRSIGLDLIITDHHQPLDQLPDAIAV 192 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 INP+ RDC++P K LAGVGVAF L++ALR+ LRDQG F + P+L + LDLVALGT+ Sbjct: 193 INPHRRDCSYPFKGLAGVGVAFNLLVALRSRLRDQGAFGDNG---PDLRQWLDLVALGTI 249 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+VPL NR+LT G+ R+ G CR G+ AL +VA + +++ +GF L PRLNA Sbjct: 250 ADLVPLVEQNRLLTSAGLQRMGDG-CRIGLAALKQVAGIKGE-VSSGQVGFQLAPRLNAV 307 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRL+ GV LLL ++ +A L+ ELD N R+++E+ + EA+ E +D Sbjct: 308 GRLESAVPGVELLLTEDPQQAAALSAELDGANLERRQVERRIFDEAIAQIEAQGGLQDR- 366 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 + + P+WHQGVVGI+ASR+ ER++RP + A D + KGSGRSI G H+ +AL Sbjct: 367 -NSIVLSSPDWHQGVVGIVASRLVERYYRPTLLVAERDDASGKGSGRSISGFHLLEALHE 425 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + ++GGH AAG+++E + F F + L L E+V D ++P Sbjct: 426 CADF----LQRYGGHRAAAGVTVEPGQMAAFADAFEQAALTRLGDQELIPELVLDVEVAP 481 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 ++T + L+ GP+G P+ ++L R GE HL + ++ G + Sbjct: 482 RDLTSALVAELQRLGPFGMGNTTPVLLLRQMQVLDCRCFGEGHLNLRLQR--DGLQFKAL 539 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + P V LA + + + G L++ + + Sbjct: 540 GWGMAERTVP----ALVDLACTVKLETWNGREQLRLELKDFR 577 >UniRef50_A4BBM4 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Reinekea blandensis MED297 RepID=A4BBM4_9GAMM Length = 573 Score = 626 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 274/563 (48%), Positives = 368/563 (65%), Gaps = 11/563 (1%) Query: 8 RRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNA 67 R + PL+ RLY +R V QELE S++ ++ ++ L G+ +AV +L A Sbjct: 15 IRTRPAHSLSKSLHPNPLVDRLYRARQVTDPQELEPSLRHLVDYRLLKGLTEAVSLLNRA 74 Query: 68 FREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHA 127 E R++VVGD+D DGATSTAL+VL ++S G ++DYL+PNRFE GYGLS E+VD A Sbjct: 75 RSERWRVLVVGDYDTDGATSTALAVLGLQSFGL-DVDYLLPNRFEYGYGLSAEIVDLALT 133 Query: 128 RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSK 187 R LIVTVDNGI+S GVE A + G+ V+VTDHHL G LP A AI+NPN DC FPSK Sbjct: 134 RQPDLIVTVDNGIASIEGVERANAAGVKVLVTDHHLAGAELPQAAAIVNPNQPDCAFPSK 193 Query: 188 SLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRIL 247 + G V +Y+++ALR LR QG +PNL + LDLVAL TVADVVPLD NNR L Sbjct: 194 AACGCTVLYYVLIALRAELRAQG-----QPDLPNLGQWLDLVALATVADVVPLDENNRRL 248 Query: 248 TWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALL 307 G++R+RAG+CRPGI+AL EVA R Q+ ASD GF +GPRLNAAGRLDDM++GV LL Sbjct: 249 VTHGLNRVRAGQCRPGIRALFEVAGRQWQEAKASDFGFVIGPRLNAAGRLDDMTIGVQLL 308 Query: 308 LCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQ 367 L ++ EAR LA+EL ALN R++IEQ M + L R+ G+ + +WH+ Sbjct: 309 LAESDDEARSLASELHALNTERRQIEQSMVADVSKSLPDLSRTDKR--CGIVVTGNDWHE 366 Query: 368 GVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 GV+GI+ASR+K+R H+PV+AFA +G KGS RS+ G+HMRDAL+ + G++LKFG Sbjct: 367 GVIGIVASRVKDRIHKPVVAFAAGDNGQWKGSARSVPGVHMRDALDWVAKKSEGVVLKFG 426 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRD 487 GHAMAAGL++ D+ F F + V + L + DG LS +E+T++ A L Sbjct: 427 GHAMAAGLTIAADRSDEFADLFDQAVQALAESEALTPHLWCDGALSDSELTLDNALALEQ 486 Query: 488 AGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGV 547 AGPWGQ FPEPLF G F++ +R++ +RHLK+ ++ G IAFNV+ ++ + Sbjct: 487 AGPWGQAFPEPLFYGEFQISDRRVLADRHLKMTLQQGAG--EWPAIAFNVEPSIL-NASA 543 Query: 548 REVQLAYKLDINEFRGNRSLQII 570 V Y+L +N FRG S+Q+I Sbjct: 544 TRVHGLYQLSVNRFRGQVSVQLI 566 >UniRef50_C1SHI0 Exonuclease RecJ n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHI0_9BACT Length = 592 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 199/587 (33%), Positives = 318/587 (54%), Gaps = 24/587 (4%) Query: 1 MKQQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELERS----VKGMLPWQQL 54 ++ + R+ E + ++L EL P + R + +A L+ +KG+ + Sbjct: 9 LRYKWIYRKPECSDISELADELGMPVCITEALYKRELFNADVLDAYFKTPLKGISSPFLI 68 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +EKA + + + T+I + GD+D DG TS AL L ++ +G +++ Y +PNR ++G Sbjct: 69 KDMEKAAAAIAESIKNNTKICIYGDYDVDGVTSVALMFLFLKEVG-ADVTYYIPNRLQEG 127 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA-AEA 173 YGL+ + G++LI+TVD GI++ V++A S+G+ VI+TDHH P +++P A A Sbjct: 128 YGLNKTAIKDIAEAGSRLIITVDCGINAMEEVQYAVSMGVEVIITDHHQPSESIPEGAAA 187 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 ++NP D K L+GVGVAF L++ALR L + G F IPN+ + LDLV LGT Sbjct: 188 VVNPMREDDTSAFKGLSGVGVAFKLVMALRYKLNESGRF---KGKIPNIKKYLDLVTLGT 244 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +ADVVPL NRI+ G+ + CRPG++ L VA D QK+ + +GF L PR+NA Sbjct: 245 IADVVPLVGENRIIVRHGLEILSGKNCRPGLRELKRVAGIDGQKVTTTHVGFGLAPRINA 304 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 GR+ G+ LL+ ++ ++ LA ELD N++R++IE+ + E+ EK + Sbjct: 305 VGRMGASDKGLRLLITNDREQSLYLAEELDKENKSRQDIERHIIEESFKRVEKNKLHEKY 364 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 GL +Y EWHQGV+GI+ASR+ E+++ P I DG KGSGRSI + LE Sbjct: 365 --KGLVLYSEEWHQGVIGIVASRLVEKYNLPAIVLTF-EDGVGKGSGRSIPSFDLYKGLE 421 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 ++ ++L FGGH AAGL +EE Q+RF + V + L+P E+ D + Sbjct: 422 QM----QDILLSFGGHKYAAGLRIEEQHITSLQKRFHKAVEDLLEPKDFVAELKIDALME 477 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGH--FRLLQQRLVGER--HLKVMVEPVGGGPL 529 P++++ E+ + L P+G EP+F + + VG HLK+ +E G + Sbjct: 478 PSDVSSELMKWLGRMEPYGAGNREPVFCMRGVNKHQEPVFVGRESMHLKIFLE--KNGKV 535 Query: 530 LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 D I +N+ G + + + R Q+++ +I P Sbjct: 536 FDCIGYNMKAYKDVVYGNESFDIVFSPAATGYYHGRYTQLVLKDIKP 582 >UniRef50_A5D3H7 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D3H7_PELTS Length = 946 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 191/579 (32%), Positives = 309/579 (53%), Gaps = 27/579 (4%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERS----VKGMLPWQQLSGVE 58 +++ + + ++ P+ +L +RG+ + ++ + + + L ++ Sbjct: 55 WRVKTPAPVLCQIFARKLDISPVTAQLLINRGIYTVEQGRAFIGSELSRLHRPELLRDMD 114 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 AV + A G +I++ GD+DADG T+TAL + R LG ++ DY +P R E+GYG+ Sbjct: 115 TAVARILQAVEAGEKILIYGDYDADGITATALLIKVFRRLG-ADADYYIPGRLEEGYGVH 173 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 E + +A +G L+VTVD GIS+ A E AR+ G+ +I+TDHH P +P A A+INP Sbjct: 174 LEPLQKALQKGTGLVVTVDCGISALAEAEWARANGLDLIITDHHEPPPEIPNACAVINPK 233 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 DC++P K LAGVG Q + + LDL LGTVAD+V Sbjct: 234 RPDCSYPFKELAGVG---------LALKLAQALLERTGAGEKAWLDYLDLACLGTVADIV 284 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 P+ NRIL G+ R+ AG PG++AL+ V+ L+ ++G+AL PRLNAAGR+ Sbjct: 285 PVQGENRILVKHGLPRL-AGTGSPGLQALMAVSGIKGDNLSPREVGYALAPRLNAAGRIG 343 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 +GV LL+ D++ EAR LA EL+ NQ R++IE + EAL+L E Sbjct: 344 TPQMGVRLLMTDDLEEARHLAGELNRYNQVRQKIESKVFEEALSLLEA--DPGLAEAPVP 401 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + P WH GV+GI+ASR+ E+ +RPV+ + G+ +GS RSI G ++ AL Sbjct: 402 VLASPGWHAGVIGIVASRLAEKLYRPVLLISLEGE-LGRGSARSIPGFNVYKALSHCHE- 459 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 +L++GGHA+AAG +E + +++ ++ L + DG + +++ Sbjct: 460 ---YLLEYGGHALAAGFKVEGGMVEDLRKKINGYARTAVEAEKLIPYLELDGIVEVGQVS 516 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGER--HLKVMVEPVGGGPLLDGIAF 535 E+ ++ P+G P+PL +L+ R++G+ HLK+ + G ++DGI F Sbjct: 517 EELVNEIKLLSPFGPSNPDPLLCCLEAFVLESRVIGKGSSHLKLRLR--GKNTVMDGIGF 574 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 N+ +V LA+ INE+ G RSLQ+ + ++ Sbjct: 575 NLGAYAEVLATAEKVDLAFVPGINEYNGRRSLQLEVKDL 613 >UniRef50_Q3A3C6 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Desulfuromonadales RepID=Q3A3C6_PELCD Length = 574 Score = 624 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 214/579 (36%), Positives = 315/579 (54%), Gaps = 28/579 (4%) Query: 9 RREVDETADLPA-----ELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVEK 59 R+V E D A L L RG+ S E++ + M ++ ++K Sbjct: 11 ERDVSEQLDAVALQQCLGLSRLASEALLRRGLGSLDEVQAFLQAKLSSMPDPCLMADMDK 70 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 AVE L A +I V GD+D DG + TAL V +R+ G + + Y +P R +DGYG+S Sbjct: 71 AVERLAQAVCNREKIAVHGDYDVDGISGTALLVETLRAFG-ARVSYHIPLRLKDGYGVSA 129 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 ++ GA L VTVD G+S+HA A LG+ +I+TDHH +TLPAA AI+NP+ Sbjct: 130 AALEDCATHGATLAVTVDCGVSAHAQAMRAAELGLDLIITDHHQVPETLPAALAIVNPSR 189 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 DC +P K+LAGVGVAF L++ALR LRD G + + + P+L LDLVALGT+AD+VP Sbjct: 190 PDCGYPFKNLAGVGVAFLLLVALRKHLRDLGHW--KTVCEPDLRYGLDLVALGTIADIVP 247 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 L NR LT G+ + R G++AL +VA D K+ +GF L PR+NAAGRL+D Sbjct: 248 LKGLNRALTKAGLELLSHS-GRAGLQALKKVAGVD--KVTCGSIGFRLAPRINAAGRLED 304 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 +VGV LLL +++ +A A LD +N R+ IEQ +A E+ + + Sbjct: 305 GAVGVELLLQESVQDAMATAEMLDRVNSDRQAIEQQTLEQAD---ERWRQRSSGATHSIV 361 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 + WH GV+GI+ASR+ E++HRP I A +G KGSGRSI+GLH+ AL Sbjct: 362 LADERWHPGVIGIVASRLVEKYHRPTILIA-LNEGVGKGSGRSIKGLHLYQALSDCQAF- 419 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 + FGGH AAGL+++ + + F + F +L + L P L+ DG +S E+ + Sbjct: 420 ---LQGFGGHEYAAGLTIDAGRVEAFARDFEKLARQTLSPEDLRFRQFHDGEVSLEEIDL 476 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD 538 + L P+G P+P++ L + VG++HL+ + GG L IAF + Sbjct: 477 DSIDELSRLAPFGPGNPQPVYLARGVHLQSVQRVGDKHLRFIACQ--GGHGLPCIAFGMA 534 Query: 539 TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 G + + + NE+R S+Q+ + +I P+ Sbjct: 535 ERQAQLAGPQ--DILFTPQRNEWRERVSVQLQVRDIRPV 571 >UniRef50_Q1N0E3 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Gammaproteobacteria RepID=Q1N0E3_9GAMM Length = 581 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 269/571 (47%), Positives = 366/571 (64%), Gaps = 21/571 (3%) Query: 24 PLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDAD 83 P++ R+ SRG+++ +L S+ + +Q L G+++AV +L A R RI+++GDFDAD Sbjct: 15 PIIERVLDSRGLKTG-DLSFSLNQLAGYQALKGIDQAVAMLEFAIRSQQRIVIIGDFDAD 73 Query: 84 GATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR-GAQLIVTVDNGISS 142 GATSTAL+V A++ LG + YLVPNRFE GYGLS + A+ + L+VTVDNGISS Sbjct: 74 GATSTALAVDALQQLGAHWVHYLVPNRFEFGYGLSSAIAQLAYEQYQPDLLVTVDNGISS 133 Query: 143 HAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLAL 202 GVE A LG+ V+VTDHHL D+LP A+AI+NPN DC FPSK+ G V FY+M AL Sbjct: 134 FEGVETAHELGMKVLVTDHHLAADSLPNADAIVNPNQPDCLFPSKAACGCAVVFYVMCAL 193 Query: 203 RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRP 262 R + G +N+ N+A+ LDLVAL TVADVVPLD NN+IL QG+ RIRAG+ RP Sbjct: 194 RAHRMNLGDETAKNL---NMAQYLDLVALATVADVVPLDRNNQILVEQGLRRIRAGQARP 250 Query: 263 GIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 322 G++ALL+VA R A L + D GFALGPRLNAAGR+DDMS+G+ LL A +A L Sbjct: 251 GVQALLQVAKRQAPLLTSKDFGFALGPRLNAAGRMDDMSIGIECLLSKEFTRAVHIAETL 310 Query: 323 DALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFH 382 D LNQ RK +E MQ EAL + E S + +YHP+WHQGVVG+LASRIKE+ Sbjct: 311 DELNQDRKSVEGQMQKEALKILETTSLSNEQEQATYCLYHPQWHQGVVGLLASRIKEKLF 370 Query: 383 RPVIAFAPAGDGT-----------LKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 RPVIAFAPA D +KGSGRSI G HMRDAL+ + P ++ KFGGHAM Sbjct: 371 RPVIAFAPASDDVTNEALASGEFEIKGSGRSIPGFHMRDALDLVAKRLPHVLQKFGGHAM 430 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 AAGLS+++ K F+ F ++ + + +L E+++DG + + + +A+ L+ PW Sbjct: 431 AAGLSIQQKHLKEFETCFEQVARDIMTADMLVNEIITDGEPNYEDYNVHIARQLKFVAPW 490 Query: 492 GQMFPEPLFDGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAF---NVDTALWPDNG 546 GQ FPEP+FDG F ++ RL+G + HLK+ + LD I F + + Sbjct: 491 GQNFPEPIFDGEFDVINYRLIGSEKNHLKLTLASKNHHRYLDAILFSIERHGLSAQDVSN 550 Query: 547 VREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 + V + + LD+NEFRG ++Q++I ++ I Sbjct: 551 LSRVHIVFDLDVNEFRGQENVQLMIRHLRSI 581 >UniRef50_A9IQX3 Single-stranded-DNA-specific exonuclease n=163 Tax=cellular organisms RepID=A9IQX3_BORPD Length = 695 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 266/558 (47%), Positives = 357/558 (63%), Gaps = 17/558 (3%) Query: 19 PAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVG 78 A + PLL RL+A+RGV + + +LP L+ V+ A IL +A +G R+++V Sbjct: 150 AAGIHPLLARLWAARGVTHPDQTRLAWPALLPPAGLTHVDHAARILADAIAQGKRLLIVA 209 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA---HARGAQLIVT 135 D+D DGAT+ A+ + A+R+ G +N+D+LVPNRFE GYGLSP VVD A HA LI+T Sbjct: 210 DYDCDGATACAVGLRALRAFG-ANVDFLVPNRFETGYGLSPAVVDLACAHHAGKPDLIIT 268 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVA 195 VDNGI+S GV A + GI V+VTDHHLPGDTLP A AI+NPN C FPSK+LAGVGV Sbjct: 269 VDNGIASVDGVAAANAAGIGVVVTDHHLPGDTLPDALAIVNPNQPGCGFPSKNLAGVGVI 328 Query: 196 FYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 FYLMLALR LR +G + P L L DLVALGTVADVV LDANNR+L QG+ R+ Sbjct: 329 FYLMLALRAELRRRGVYPPDGG--PRLDALSDLVALGTVADVVKLDANNRLLVTQGLQRM 386 Query: 256 RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 RAG+ +PG++AL VA R+ + DLGFALGPR+NAAGRL DMS+G+A L D+ +A Sbjct: 387 RAGRMQPGLRALFAVAAREPRSACGFDLGFALGPRINAAGRLADMSLGIACLTTDDEAQA 446 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 +A +LD +N+ R+ IE M+ +A+ + + + ++ P WHQGVVG++AS Sbjct: 447 LDMARQLDQINRERRGIEAEMREQAMAAMDAAGSANGAT---VCVFDPSWHQGVVGLVAS 503 Query: 376 RIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 R+KE++ RP +AFAPAGD L+GSGRSI +H+RD L+ + +PG++ KFGGHAMAAGL Sbjct: 504 RLKEKYWRPTLAFAPAGDDELRGSGRSIPDVHLRDVLDLVSKRHPGLIRKFGGHAMAAGL 563 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 +L D F +F F V E + + +DG L +VA LL+ WG F Sbjct: 564 TLGRDDFSVFGPAFDAAVRELTGRDRFEPLLETDGSLESGYANADVATLLQQ-QVWGAGF 622 Query: 496 PEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYK 555 PLF F + QRLVGE+HLK+ +E G D I F D +L +Q AY+ Sbjct: 623 APPLFLDEFTVRNQRLVGEKHLKLSLER--GHQRFDAIWFGHDQSL-----PERIQAAYR 675 Query: 556 LDINEFRGNRSLQIIIDN 573 L+ N + G S Q++I++ Sbjct: 676 LEPNVWNGMVSAQLVIEH 693 >UniRef50_C9KKH1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Veillonellaceae RepID=C9KKH1_9FIRM Length = 668 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 205/586 (34%), Positives = 310/586 (52%), Gaps = 29/586 (4%) Query: 1 MKQQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 M ++ +L V E A E+ + L RG+R+ E + + Sbjct: 1 MYKKWKLYEP-VPELAAFAQEIGRDTTVAALLWHRGIRTRDAAELFLHPERLPFADPFAM 59 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++KAV + A +G I V GD+D DG T+T+L +R G + +D+ +P+R +G Sbjct: 60 RDMDKAVARIQKALAQGEHITVYGDYDVDGMTATSLLTRTLRKFG-AKVDFYIPDRMTEG 118 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLG-IPVIVTDHHLPGDTLPAAEA 173 YGL+ +++ + L+VTVD GI+S A V + G + +I+TDHHLPG LP A A Sbjct: 119 YGLNRRALEEIAEQS-DLLVTVDCGIASVADVAAIQGAGKLDIIITDHHLPGSELPPACA 177 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 ++NP+ DC +P K LAGVGVAF L AL + W + L+LVALGT Sbjct: 178 VLNPHRADCPYPDKDLAGVGVAFKLCQALAAARSGKLW-----DGQSAFTDDLELVALGT 232 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 VAD+VPL NR + QGM+R+ A PG+ AL+EVA +K+ A LGF L PRLNA Sbjct: 233 VADIVPLRGENRRIVKQGMARMEATAL-PGVAALVEVAGLKDKKITAGHLGFLLAPRLNA 291 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGR++ GVALL ++ +A LA ELDALN R+EIE + A E L+ + Sbjct: 292 AGRIESARTGVALLTAEDRAQADKLALELDALNTERREIESTICQTAEQELESLDMAE-- 349 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 + + W+ GV+GI ASR+ ++F++P I + DG +GS RSI+GL+M +AL Sbjct: 350 -TKAIVVAGKGWNPGVIGIAASRLVDKFYKPTIVLSVQEDGICRGSCRSIEGLNMYEALS 408 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 +L+FGGHAMAAGLSL E++ F+ F L + +V + + Sbjct: 409 ACKE----HLLQFGGHAMAAGLSLREEELPAFRAAFAAYAGAHLSEEDYEPKVSVEFEMM 464 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPLL 530 P E+T+++ + L P+G P+P F + R + +G + HL+ + P+ Sbjct: 465 PEELTLDLVEELSLLEPYGMGNPKPYFGCRNVRGREAMAIGREQNHLRFKL-GTEDAPVT 523 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + D A + + + Y INE+ G RSLQ +++++ P Sbjct: 524 SLMWNRADLAAAVNR--ETLDVVYAPAINEWNGRRSLQCMVEDLSP 567 >UniRef50_B8FQU1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Desulfitobacterium hafniense RepID=B8FQU1_DESHD Length = 801 Score = 622 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 195/589 (33%), Positives = 304/589 (51%), Gaps = 35/589 (5%) Query: 1 MKQQIQLRRREV----DETADLPA--ELPPLLRRLYASRGVRSAQELERSVKG----MLP 50 M ++I + + + D + LP + P++ + RG+ + +E+ ++ + Sbjct: 1 MTKRIWTKPQPLPGFKDSRSPLPQRLGITPVVADILRQRGIEAEEEIMEFLRPSLLNLNS 60 Query: 51 WQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNR 110 + +A+E L A + +I++ GD+D DG TSTAL + LG + Y +P+R Sbjct: 61 PFAFREMARAIERLELARAQEEKILIYGDYDVDGVTSTALLYKVLTDLGFKAVAY-IPSR 119 Query: 111 FEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA 170 ++GYGL + + +A ++++TVD GI++ VE+ARS GI +I+TDHH P D+LP Sbjct: 120 MDEGYGLHKDAITKALQANVKVMITVDCGITAVEEVEYARSQGIDIILTDHHEPPDSLPQ 179 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A AI+NP ++D +P + LAGVGVAF L AL L +E + E+LDL A Sbjct: 180 AYAILNPKVKDSGYPFRDLAGVGVAFKLAQALLERL------EEGKSGAYAVLEILDLAA 233 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPR 290 LGT+AD+VPL NRI+ G+ ++ G++ LLE + L A + F + PR Sbjct: 234 LGTIADLVPLTHENRIIVAYGLRQM-ENTIHLGLRTLLEECGLWGKPLKAGQIAFMVAPR 292 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NAAGR+D G+ LLL + A LA L N R++ E+ + EA+ + EK Sbjct: 293 INAAGRMDSARAGLELLLTGHEERAVELARFLSRENTLRQDTEKEIFAEAVEILEK---- 348 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRD 410 + +P + + WH GV+GI+ASR+ ER++RPV A + KGS R I G H+ D Sbjct: 349 -NPMPRVIVLSGKNWHHGVIGIVASRLVERYYRPVFLIAEEEE-IGKGSARGIGGYHVLD 406 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 L+ L + KFGGH+ AAG SL+ + L ++ + L + + D Sbjct: 407 ELKAQAEL----LEKFGGHSQAAGFSLKLETIPLLREALNQAAL-HLPEEMFYERIRVDQ 461 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGER--HLKVMVEPVGGG 527 + + + L P+G P P+ G + L VG+ HLK M P G Sbjct: 462 CVPLEVLDASLLHDLEHLAPFGFGNPSPVLAGRDYPLYMADTVGKDHAHLKCMFGPQG-- 519 Query: 528 PLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 +GIAF L G V +A+ LD N FRG +S+Q++I +I P Sbjct: 520 -EWEGIAFRKGEELANILGSATVDVAFGLDWNTFRGAQSIQLMIKDIQP 567 >UniRef50_A9B300 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B300_HERA2 Length = 573 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 177/578 (30%), Positives = 288/578 (49%), Gaps = 23/578 (3%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSGVE 58 + QL E PLL + +RG R A +E+ + L ++ Sbjct: 8 RHWQLPTSASPSQLRSLGEYHPLLAAILWNRGWRDAAAVEQFLNIDWKQRHDPFLLHDMD 67 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 +AVE + A + R++V GDFD DG T L + ++ G + +P R +GYGL+ Sbjct: 68 RAVERIKQAVAQQQRVVVYGDFDTDGVTGVTLLMQLFKAFGLP-VRPYIPKREGEGYGLN 126 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 +++ H G L+VTVD GIS+ A + A LG IV DHH P LP A A+++P Sbjct: 127 LAAIEKLHQEGLDLLVTVDCGISNVAEISRANELGFDTIVLDHHQPPANLPPAYAVVDPK 186 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 DC +P K L GVGVAF L AL R ++LD+VALGT+AD++ Sbjct: 187 RSDCAYPFKGLCGVGVAFKLYEALWRAGIQPNNLRAR--------DILDVVALGTIADMM 238 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NR+L G+ + + RPG+KALL VA + K+ AS +GF L PR+NAAGRL Sbjct: 239 PLTGENRVLVHFGLQAMNESQ-RPGLKALLRVAGVEQGKIDASSVGFRLSPRINAAGRLV 297 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 D + +LLL + +A A++L++ N R+ + + +Q A L + + + L Sbjct: 298 DARIAYSLLLAPDQAQADGFADQLNSTNIERQALTRDVQQAARELAQNSGQLDQRI---L 354 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + ++H GVVG+ A ++ E F RPV+ D + +GS RSI G ++ +AL L Sbjct: 355 VIVGEDFHHGVVGLAAGKLAEEFARPVLVMGKEEDRS-RGSARSIPGFNIVNALAECADL 413 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 + K+GGHA AAG ++ + +QR + + + +++ ++ D + ++ Sbjct: 414 FE----KYGGHAAAAGFTIANEHIPELEQRLQAIANQQITDAMMVPQLPIDAEATFDQLN 469 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 ++ +L P+G P+P F +++ R VG + + + G I FN+ Sbjct: 470 LDTLAVLEKMAPFGLENPQPRFCSRRVTVIEARGVGAENQHLRLRLQQGRHYQTAIGFNL 529 Query: 538 DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 L ++ + Y + INE+ G S+Q+ + ++ Sbjct: 530 GDWLAELPNGSQIDIVYTVGINEWNGRSSVQLTLVDLR 567 >UniRef50_B2A2F5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2F5_NATTJ Length = 831 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 200/584 (34%), Positives = 308/584 (52%), Gaps = 30/584 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 +K I+ E + + +L +L +RGV + +++ + + L Sbjct: 6 VKWNIKTDYSETAKELANSCNISTVLAQLLVNRGVTTPEQVADFLNPSFDSLHSPWLLPD 65 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++AVE++ + I++ GD+DADG T+TAL + + NI Y +P+RF+DGYG Sbjct: 66 MKQAVELIDKIIKSNEPILIYGDYDADGVTATALLYEYLST-KFDNIYYYIPDRFKDGYG 124 Query: 117 LSPEVVDQAHAR--GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 L+ V+ R +LI+TVD GI+S +E LG VIVTDHH LP+A A+ Sbjct: 125 LTNAGVNSVLERFPQCKLIITVDCGINSIQEIEELNRLGKKVIVTDHHEQLGDLPSAHAV 184 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 INP + N+P K LAGVGVAF L+ AL + F+E L + LDLV +GT+ Sbjct: 185 INPKIHTTNYPFKYLAGVGVAFKLVSALAEQIETHYDFNEL------LKQYLDLVTIGTI 238 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+VPL + NRI +G+ I RPG+KAL+++ + ++ A +GF +GPR+NAA Sbjct: 239 ADLVPLTSENRIFVSKGLQYIDE--RRPGMKALMDLLGLEYGEVKAGQVGFVIGPRINAA 296 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRL V LL + AR LA +LD N+ R+++EQ + EA + + + Sbjct: 297 GRLASADEAVQLLTESSESAARELAKKLDKENRERQKVEQKITKEADEMINR--NNLLAR 354 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALE 413 L ++ WH+GVVGI+ASR+ E+++RPVI + G LKGS RSI G +M +AL+ Sbjct: 355 GPVLVVWSENWHEGVVGIVASRLLEKYYRPVIVLTRDDEPGKLKGSCRSISGFNMAEALK 414 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 D L ++K+GGH +AAGL LE F ++ L +WL L + D + Sbjct: 415 SCDNL----LIKYGGHELAAGLKLESAHLDEFIKQMNHLAQKWLSEDDLLPSIDIDMEIP 470 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 +T E+A+ + P+G P+P+ GH ++ R VG+ + ++ +LDG Sbjct: 471 EEALTRELAEEISQLEPFGMGNPQPVIGCGHIQVASTREVGKSSEHLQIKFKNNMGVLDG 530 Query: 533 IAFNVDTALWPDN--GVREVQLAYKLDINEF-----RGNRSLQI 569 I F N VQ A+ I+ F +G+ SLQ+ Sbjct: 531 IWFKGAEKAKEKNIKTGMPVQAAFIPKISTFKSKSSKGHLSLQL 574 >UniRef50_Q8EPR4 Single-strand DNA-specific exonuclease n=1 Tax=Oceanobacillus iheyensis RepID=Q8EPR4_OCEIH Length = 771 Score = 620 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 177/580 (30%), Positives = 300/580 (51%), Gaps = 35/580 (6%) Query: 2 KQQIQLRRREVDETADLPA-ELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 K + + + E ++ L L PLL++L+ RG+ + +E++R + + L Sbjct: 5 KMKWRYNQVEDHNSSLLKDTNLSPLLKQLFIQRGITTNEEVQRFLSPQIDDLHHPFLLKD 64 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +EKAV+ ++ A + +I+V GD+DADG +STA+ + A+ LG + D+ +PNRF +GYG Sbjct: 65 MEKAVQRIHKAIQNEEKILVFGDYDADGVSSTAVMLKALTELG-ATCDFYIPNRFTEGYG 123 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + A +G ++I+TVD GI+S A LG+ +I+TDHH P +P + AII+ Sbjct: 124 PNEAAFRNASEQGYKVIITVDTGITSVHEANIANELGMDLIITDHHEPQTNIPESFAIIH 183 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P +P LAGVGVAF AL + Q L A+GT+AD Sbjct: 184 PKCSP-EYPFNELAGVGVAFKFAEALLGYFPSQ---------------FLSYTAIGTIAD 227 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +VPL NR+L G+ +RA G+KAL++V + L +GF++GPRLNA GR Sbjct: 228 LVPLFDENRVLASYGLKELRATTD-VGLKALIQVCQIE--DLDEQSIGFSIGPRLNAVGR 284 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L D + V LLL +++ A +ANE++ +N RK++ Q + EA + R Sbjct: 285 LQDADLAVELLLTEDMEAALEIANEINKINDERKKVVQRIVSEADQIVNSKPERR----- 339 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERL 415 + + + W+QGV+GI+AS + ++ RP I + +G +KGS RSI + + R+ Sbjct: 340 IIVVSNEAWNQGVLGIVASHLVRKYDRPAIVLSTQPENGVVKGSARSIPAFDLFEGCMRM 399 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L+ FGGH+ AAG++L + + + +++ L L+ E+ G L+ Sbjct: 400 RDLF----THFGGHSQAAGMTLPIENVDKLELQLDDILNNELAEEDLKQELEISGQLNME 455 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 + +E+ + + P+G P+P+F + +G + + ++ +D I F Sbjct: 456 NINIELIKDISKLAPFGMKNPKPVFQIKEIPSDIKRIGSKKNHLKMQFRKNSTRMDAIGF 515 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 A +Q+A +L INE+ GN++ Q++I ++ Sbjct: 516 GWGDAYNQIAPHTPIQIAGELSINEWNGNQTAQLMIQDMK 555 >UniRef50_Q1LTU5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LTU5_BAUCH Length = 575 Score = 619 bits (1597), Expect = e-176, Method: Composition-based stats. Identities = 292/573 (50%), Positives = 408/573 (71%), Gaps = 4/573 (0%) Query: 5 IQLRRREVDETADL-PAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEI 63 +QLRRR + + + L +P LL+R+Y RG+++ +ELE + Q +G+++A + Sbjct: 3 VQLRRRAIGDISILDEINIPILLKRIYIQRGIKNPRELELKTCYLFTNAQFNGIQQAAIL 62 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 L A R+ I+VVGDFD DGATSTAL +LA++ +G I++L+ NRF+D YGL+ VV+ Sbjct: 63 LTKALRDKLSIMVVGDFDVDGATSTALVILALKQMGVEKINFLILNRFKDSYGLNTRVVE 122 Query: 124 QAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 + + GAQ+I+TVDNG+SSH + A + GIPV+V DHHLPG TLP A +I+NPNL++CN Sbjct: 123 KVASSGAQIILTVDNGVSSHTAINLAVAKGIPVLVIDHHLPGQTLPNAVSIVNPNLKNCN 182 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 F SK+LA VGVAFYLMLALR L GWFD+ IA+P LA+L DLVALGTVAD+VPLD N Sbjct: 183 FQSKNLASVGVAFYLMLALRMELCKSGWFDKNKIAVPKLAKLFDLVALGTVADMVPLDMN 242 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NRIL QG++ IR G CRPGI+AL+E++N + K+ ASDLGF + PRLNAAGRL DMS+ Sbjct: 243 NRILVHQGINLIRTGCCRPGIRALVEISNINLTKICASDLGFYISPRLNAAGRLQDMSLS 302 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 V LLL DN+ AR++A +LD LN+ R+ IEQ M I+AL LC+++E +++ +P GL +YH Sbjct: 303 VELLLADNLSTARIIAAKLDRLNKERRLIEQKMFIQALNLCKQIENTKNGIPSGLLLYHQ 362 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMM 423 WHQGV+GI+AS+IKE F+RPVI APA + LKGS RS+ +H+ + L+ LD LYP MM Sbjct: 363 NWHQGVIGIIASQIKEFFYRPVIILAPADNFLLKGSCRSVPSVHIYNLLQILDQLYPNMM 422 Query: 424 LKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483 L FGGHAMAAGL++E+ K LF+ F L + + PS+L + SDG L E+++ A+ Sbjct: 423 LNFGGHAMAAGLTIEQSKLSLFRDSFYSLANQLIKPSMLNKIIWSDGELVGKEISISTAK 482 Query: 484 LLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWP 543 +LR+ GPWG F +PLFDG F +L + L+ + HLK+ ++ + G ++DGI FN++ + Sbjct: 483 ILREGGPWGVEFTDPLFDGIFCILNKMLIKKVHLKIKLQDISNGLIIDGIIFNINKIILL 542 Query: 544 DNGVREV-QLAYKLDINEFRGNRSLQIIIDNIW 575 + + ++AYKL+IN N LQ++I IW Sbjct: 543 SIKTKTLYRIAYKLNIN--YSNHQLQLLIQYIW 573 >UniRef50_C8NEZ1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Granulicatella RepID=C8NEZ1_9LACT Length = 771 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 177/584 (30%), Positives = 292/584 (50%), Gaps = 37/584 (6%) Query: 2 KQQIQLRRR---EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 +L+ E+ + + + L RL RG+++A+EL+ + + L Sbjct: 5 NYAWKLKENVDEELVTSLSSESGVSRNLVRLCVERGIQTAEELQEFLSPTPHLIHDPFLL 64 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++KAV + A G I + GD+DADG TST + + LG + + Y +PNRF DG Sbjct: 65 HDMDKAVGRIQEAIENGELIHIYGDYDADGITSTTILYETLEMLG-AQVSYYLPNRFTDG 123 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + + G LI+TVD GI++H + +A G VI+TDHH +P A A+ Sbjct: 124 YGPNTPAFQRVIEEGHTLIITVDCGIAAHEPIRYAMENGCDVILTDHHEIPSEIPEAYAV 183 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 ++P + N+P L+G GVAF L AL + E+++L A+GT+ Sbjct: 184 VHPRHPEANYPCGDLSGAGVAFKLAHALLGEFPE---------------EMVELAAIGTI 228 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+V L NR + G+++++ + R G+ +LLE + KL +GF +GPRLNA Sbjct: 229 ADLVSLTDENRTIAKLGIAQMKQTQ-RIGLVSLLEKLSVKMDKLDEKTIGFQIGPRLNAL 287 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRL D + GV LL + EA+ + + + + N+ R+ I + EA + ++ Sbjct: 288 GRLGDATPGVQLLTTFDDEEAQSIVDFMQSENERRQAIVNQIVEEATPIIQEQMNQ---- 343 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG-TLKGSGRSIQGLHMRDALE 413 L + P WH+GV+GI+ASRI E+ +P + + DG T KGSGRS ++ DAL Sbjct: 344 -PILVLAQPGWHEGVLGIVASRIVEQTGKPTLVLGISDDGLTAKGSGRSFGEFNLYDALT 402 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + +LKFGGH MAAGL++E + + D + + D L Sbjct: 403 SVKD----HLLKFGGHHMAAGLTVETIMLPTIIDGLEQYAKDHQDLLDAKATLTIDEVLP 458 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVG--ERHLKVMVEPVGGGPLL 530 ++T+E + L P+G PEP+ ++ +L+G ++HLK+ ++ L Sbjct: 459 LKDITVEWIESLASLKPFGTDNPEPIVSLEGIQVASTQLLGADKKHLKLHLKEDNSTYTL 518 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +AF+ ++ +A L+INE++ NR Q+++ +I Sbjct: 519 QAMAFSKGEWAASLQPDTKISIAGTLEINEWQNNRLPQLMVKDI 562 >UniRef50_Q6F719 SsDNA exonuclease, 5'--> 3' specific , Mg dependent n=2 Tax=Acinetobacter RepID=Q6F719_ACIAD Length = 568 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 250/574 (43%), Positives = 367/574 (63%), Gaps = 12/574 (2%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVE 62 + IQ+++R + D ++P + + A RGV S Q+L+ +K +L G++ A+ Sbjct: 2 RTIQIKQRPLLTHPDQFQDVPEFIAHILARRGVDSIQQLDLKLKYLLKPTL-KGLDTAIA 60 Query: 63 ILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVV 122 ++ A + +II+VGD+DADGATSTAL LA++ +G + +DY+VP+RF+ GYGL+P + Sbjct: 61 LIDQAIDQQQQIIIVGDYDADGATSTALMCLALKEMG-ARVDYIVPDRFKYGYGLTPAIA 119 Query: 123 DQAHAR-GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 D AH + +L++TVDNGISSHAGVE A+ LG+ VI+TDHHL + P AEA++NPN + Sbjct: 120 DLAHQQCQPELLITVDNGISSHAGVEQAQQLGMKVIITDHHLTTKSAPDAEAVVNPNQLN 179 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 C FPSK+LAGVGVAFYL+ L + + + + + LDLVALGT ADV LD Sbjct: 180 CPFPSKALAGVGVAFYLLAHLSSLRQAH------HKPSCKITQYLDLVALGTYADVASLD 233 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NNRIL G+ RI+ +CR GI ALL++A RD L A DLGF LGPR+NAAGR+D M+ Sbjct: 234 YNNRILVDAGLKRIQQQQCRAGILALLDIAKRDPSTLKAQDLGFVLGPRINAAGRMDSMN 293 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 +G+ LL ++ A +A +L+ LN R+++E M+ +AL E ++ + +P L M+ Sbjct: 294 IGIECLLASDLETAYPIAEQLNRLNLERRQVETEMKQQALGYLEDIQLQHENIPPALVMF 353 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALERLDTLYP 420 WHQGV+GI+A R+KE+FHRP I FAP DG +KGS RSI+G+H+RD +E++ +P Sbjct: 354 AENWHQGVIGIVAGRLKEQFHRPSIVFAPDTDGEHIKGSARSIEGIHIRDTIEQVAEQHP 413 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 ++ FGGHA AAGL+L++ F+ F+ F + + +D +LLQ + +DG L + +E Sbjct: 414 HLVSHFGGHAAAAGLTLKKSHFEEFKNVFTACIAQ-MDETLLQAVLWTDGSLPAQAIDLE 472 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA 540 + GPWGQ FP P F+G F +L R + + HLK+ + G +D IAFN Sbjct: 473 TVDWIERLGPWGQKFPLPQFEGRFEVLDYRWLKDIHLKLKLGLGEYGS-VDAIAFNAAQK 531 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 D + V L Y+LD NEF G+ +LQ+ I ++ Sbjct: 532 FDFDPMKKHVNLVYELDRNEFNGSVNLQLRILHL 565 >UniRef50_Q2YBC4 Exonuclease RecJ n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2YBC4_NITMU Length = 613 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 260/595 (43%), Positives = 355/595 (59%), Gaps = 49/595 (8%) Query: 21 ELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 P+L R+Y++RG+ +LE ++P+ +L + L A R+++V D+ Sbjct: 21 GFHPVLARVYSARGIEEPGQLEIDWSRLIPFARLKNATAMAQFLATAIALRKRLLIVADY 80 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHA--RGAQLIVTVDN 138 D+DGAT+ A+ + A+R G + +DYLVPNRFE GYGL+PE+V A A +++TVDN Sbjct: 81 DSDGATACAVGIRALRKFG-AQVDYLVPNRFEYGYGLTPEIVRVAAAGVHRPDILITVDN 139 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 GI+S GV A LG+ V+VTDHHLPGDTLP A I+NPN C+FPSK L+GVGV FY+ Sbjct: 140 GIASVEGVAEANRLGMQVLVTDHHLPGDTLPEAAVIVNPNQPGCDFPSKHLSGVGVMFYV 199 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 MLALR LR +G F PNL LLDLVALGTVADVV LD NNR+L QG+ RIR G Sbjct: 200 MLALRAELRAKGMFASPQ-QEPNLGSLLDLVALGTVADVVKLDDNNRLLVQQGLKRIRKG 258 Query: 259 KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVL 318 GI AL+ +A R+ + + +LGF +GPRLNAAGRLDDMS+G+ L+ D+ A L Sbjct: 259 SGCAGINALINIACRNFSQTSTYELGFMIGPRLNAAGRLDDMSLGIECLITDDPPRAAQL 318 Query: 319 ANELDALNQTRKEIEQGMQIEALTLCEKL-----------------------------ER 349 A +LD N+ R+EIE M+ AL + E + Sbjct: 319 ALQLDTFNRKRQEIESHMRDSALNMLENIFSGSSGLQDSPTLRPSDMPQRSGVFRSHDSP 378 Query: 350 SRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMR 409 T L ++ P WHQGV+GILASRIK++FHRPVI FAP G LKGSGRSI G H+R Sbjct: 379 QEGTSAYALTLFDPGWHQGVIGILASRIKDKFHRPVITFAPGGQDELKGSGRSIPGFHLR 438 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 DAL+ + YPG++LKFGGH+ AAGL++ F+ F+ F + E L P+ L+ + +D Sbjct: 439 DALDLVSKRYPGLLLKFGGHSAAAGLTIRTCDFEKFRAAFEQTARELLGPADLKRVIETD 498 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEP----VG 525 G L +E+T+E+A+ L WGQ FP+P F F + QR+VG++HLK+ + G Sbjct: 499 GDLDESEITLELAEQLVR-QVWGQGFPQPAFRSRFHVEDQRVVGQKHLKLKLRKARPAAG 557 Query: 526 GGP------LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 P L D I F L + Y+L +N+F+ + SLQ I+++ Sbjct: 558 NNPPEKPVLLYDAILF-----LQDGPLPGVIDAVYRLQVNDFKSDVSLQFILEHW 607 >UniRef50_C6IZW2 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Bacillales RepID=C6IZW2_9BACL Length = 801 Score = 614 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 194/572 (33%), Positives = 304/572 (53%), Gaps = 31/572 (5%) Query: 11 EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSGVEKAVEILYN 66 E + PLL L +R + S ++ E ++G L LSG+++AV + Sbjct: 16 EAARRLAGQLNISPLLASLLVTREMESPEKAELFLRGSLADQHDPMLLSGMKEAVPRIRR 75 Query: 67 AFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH 126 A G RI++ GD+DADG +ST L + MR LG + DY +P+R ++GYGL V++ H Sbjct: 76 AVENGERILIYGDYDADGVSSTTLMIYLMRHLGATY-DYYIPHRTKEGYGLHIPVLEHYH 134 Query: 127 ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPS 186 +G LIVTVD GIS+ V +A ++G+ VIVTDHH P LP A A+INP L C +P Sbjct: 135 KKGFTLIVTVDTGISAVEQVAYANAVGMDVIVTDHHEPPAVLPEAYALINPKLPYCTYPF 194 Query: 187 KSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRI 246 K LAGVGVA+ L AL + +L ALGT+AD++PL NR+ Sbjct: 195 KGLAGVGVAYKLAQAL--------------LGEDTPIAWTELAALGTIADLMPLTGENRM 240 Query: 247 LTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVAL 306 + G++ + PG+ ALL + + ++ ++ + F L PR+NA+GR+ + VAL Sbjct: 241 IVKSGLASMERS-AFPGMTALLGTSGWSSGEVTSTAVAFGLAPRINASGRMSHANRAVAL 299 Query: 307 LLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWH 366 L +N+ EA +A ELD LN+ R+ I + M EAL E E+S + LP + + W+ Sbjct: 300 LTAENMEEAEAIAEELDVLNKERQIIVEDMVQEALQQLESQEQS-EGLPDVIVVAGEGWN 358 Query: 367 QGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLK 425 GVVGI+AS++ ER++RP I + G KGS RSI G + +AL L + Sbjct: 359 AGVVGIVASKLLERYYRPTIVLGIHPETGECKGSARSIPGFDIYEALTDCADL----LDH 414 Query: 426 FGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLL 485 FGGH AAG+SL ++ + F +R L P + +D S ++T++ + L Sbjct: 415 FGGHPSAAGMSLSRERLEEFGRRLNAFAAGRLTPEHFVPVLETDLTCSLKDITLQAIEQL 474 Query: 486 RDAGPWGQMFPEP-LFDGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVDTALW 542 + P+G P L +LL+ R +G+ +HLK+++ G ++ +AF Sbjct: 475 QQLAPFGMANTCPRLLLRGLKLLECRQMGKDGKHLKLIL--GQNGKTVEAVAFGKGELAP 532 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + + + + +NE+ G+R Q++I ++ Sbjct: 533 LLSEEARIDIVAEASVNEWNGSRKPQLMIQDL 564 >UniRef50_Q39XC5 RecJ exonuclease n=6 Tax=Desulfuromonadales RepID=Q39XC5_GEOMG Length = 578 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 222/581 (38%), Positives = 317/581 (54%), Gaps = 24/581 (4%) Query: 2 KQQIQLR--RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGML----PWQQLS 55 +++ +LR +E + + + P L L A+RG+ + R + L L Sbjct: 6 EKRWELRTNDKEAAQRIASDSSVDPFLAALLANRGIADGESARRFLSSSLGDVSDPFLLK 65 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 G+E+AV L A + V GD+D DG T+TAL V R++G Y +P R E+GY Sbjct: 66 GMEEAVARLCAARARRETVCVYGDYDVDGITATALLVSFFRAVGI-RCFYHIPKRLEEGY 124 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GLS + + + + AQ++VTVD G+++ A E +LG+ +++TDHH PG +P A A+I Sbjct: 125 GLSVDGLRKVAEQ-AQVVVTVDCGVNAVAEAELCLTLGVDLVITDHHTPGPAIPKACAVI 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP C++P KSLAGVGVAF +M+ALR LR +G F N PNL E LDLVALGT+A Sbjct: 184 NPLQPGCSYPFKSLAGVGVAFNVMVALRGRLRAEGAFAGGNG--PNLREYLDLVALGTIA 241 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 DVVPL NRI G+ + A R G+KAL +VA ++ +GF L PRLNAAG Sbjct: 242 DVVPLVGENRIFVKYGLRELSAS-SRVGVKALKDVAGVTGA-VSCGAVGFRLAPRLNAAG 299 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R++D + GV LLL G A +A ELDA N R+ +E+ + +AL + Sbjct: 300 RMEDAAAGVELLLETEPGRAAAIAAELDANNDERQALERQILTDALGRVQGNTAMEGR-- 357 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + + WH GV+GI+ASR+ + FHRP + A +G +GSGRSI G H+ DAL Sbjct: 358 KSIVLASAAWHPGVIGIVASRMVDLFHRPTVLIA-LQEGNGRGSGRSIPGFHLYDALGAC 416 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 ++KFGGH AAGLS++E +LF RF E+ L L + D LS Sbjct: 417 ADQ----LVKFGGHRYAAGLSIDEPTLELFVDRFEEVAAGLLSADDLIPVLRVDAVLSAQ 472 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 ++T +A L P+G PEPLF ++++ V HLK V GGG D I Sbjct: 473 QVTAGLADALSSLEPFGAGNPEPLFVLKDMEIVRRWAVRGNHLK--VRLSGGGFTFDAIG 530 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 FN+ T D+ V + + L NE+ G ++LQ+ + +I Sbjct: 531 FNLATK--EDSLPDLVDIVFTLGWNEWNGRKTLQLSLKDIR 569 >UniRef50_A1HMM2 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMM2_9FIRM Length = 570 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 182/580 (31%), Positives = 299/580 (51%), Gaps = 29/580 (5%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVE 58 ++ R + + PL+ ++ +RG+ S + + + + L G+ Sbjct: 8 WRVAAADRALQAEIAGQLGITPLVAQILINRGINSVEAADAFLNAGVERLHDPFALKGMA 67 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 A+E + A +I++ GD+D DG T++AL + LG + + Y VP+RF +GYGL+ Sbjct: 68 AAIERIRQALHSKEKIVIYGDYDVDGITASALLYRVLSQLGAA-VAYYVPDRFSEGYGLN 126 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 + GA LI+TVD GI++ V R +I+TDHH PG +PAA A+INP Sbjct: 127 ITALQNLCRAGADLIITVDCGITAVNEVAAIRGE-ADIIITDHHEPGAAVPAALAVINPK 185 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 DC +P K+LAGVGVAF L AL + + L + LDLVA+GTVAD+V Sbjct: 186 QPDCPYPEKALAGVGVAFKLCQALWQ---------DAGRPVDELYKYLDLVAVGTVADLV 236 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NRI+ +G++R+ A + G++AL+ V ++ + F L PRLNAAGR+ Sbjct: 237 PLVGENRIIVREGLNRLPATE-NAGLRALVAVCGFTDGRMDTGRIAFGLAPRLNAAGRVS 295 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 V +L+ D+ A +A ELDA N R+ IE ++++ + + + + L Sbjct: 296 HALSAVEMLITDDALFAGEVAKELDAANAERRRIEDAIRVQVEEMLAGTDLEANKV---L 352 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + +WH GV+GI+ASRI E+F+RP + + +G +GS RSI+G ++ +AL R L Sbjct: 353 VVAAEDWHHGVIGIVASRIVEKFYRPTLIISIE-NGVGRGSARSIRGFNIFEALCRSSDL 411 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 +L+FGGH+ AAG S+ + ++R L E L P + + D P+ ++T Sbjct: 412 ----LLRFGGHSAAAGFSILPENVDELRRRLNALAAEVLTPDDFRPVIQIDVPVMLRDIT 467 Query: 479 MEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAF 535 + + L P+G P P+ + ++L+ R +G HLK+ V G + + + Sbjct: 468 LPLLAELNRLAPYGFGNPAPVLACKNIQVLEARRIGADGSHLKLRVCHEGCPG--EVVMW 525 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 N V + + ++NE++G S+Q+ +I Sbjct: 526 NRGDLADKIPVNSLVAMTFFPEVNEWQGRLSIQLRASDIK 565 >UniRef50_Q1WT52 Single-stranded-DNA-specific exonuclease n=5 Tax=Lactobacillales RepID=Q1WT52_LACS1 Length = 777 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 179/580 (30%), Positives = 294/580 (50%), Gaps = 34/580 (5%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVE 58 Q+I+L E + P ++ ++ RG S + + + +G+ + +E Sbjct: 9 QEIELSENEHLDELIEETGFPKIVLQILMERGYDSLEAINNFLDPDARGLYDPNFMHDME 68 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 V+ + A G +I++ GD+D DG TSTAL + LG + ++Y +P+RF+DGYG + Sbjct: 69 LGVDRIQQAIMNGEKIVIYGDYDVDGITSTALMYETLEELG-AEVEYYIPDRFKDGYGPN 127 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 EV + G LIVTVDNG++ H +++A G+ V+VTDHH +TLP A AII+P Sbjct: 128 VEVYKRLIDEGVSLIVTVDNGVAGHEAIDYANQHGVDVVVTDHHELPETLPDAYAIIHPR 187 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 + ++P L+GVGVAF + AL L ++LDLVALGTVAD+V Sbjct: 188 HPEGDYPFGELSGVGVAFKVAAALLEELPQ---------------DVLDLVALGTVADLV 232 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 L NRIL G+ ++ RPG+++L +VA + + +GF+L PRLNA GR++ Sbjct: 233 SLTGENRILVKYGLQLLQQT-MRPGLQSLYKVAGIEVPTITEETIGFSLAPRLNALGRME 291 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 + S+GV LL + A LA + LN R+E + EA+ + Sbjct: 292 NGSLGVELLTTLDEERAEELAKTTNQLNIKRQEEVNKIVEEAVAQLANKSENHLVN---- 347 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDT 417 + WH+GVVGI+ASR+ + +P + + G KGSGRSI+ M DAL+ Sbjct: 348 VVAGNNWHEGVVGIVASRLVDMTGKPSLVLSIDEKTGIAKGSGRSIEAFQMFDALDS--- 404 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 + +++KFGGH MA GLSL+ +K QQ E + + V P++ ++ Sbjct: 405 -HRDILMKFGGHHMACGLSLDREKLSDLQQVVDEEGKKQGIEHATKPVVKV-IPVNLDDV 462 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN 536 + + L P+G P P+F+ + + + +G++ + ++ +D + F Sbjct: 463 NLGLEAQLEALAPFGTDNPRPVFEFKDYEVNTVQAIGQQKNHLKLQLQSNNSQVDALDFG 522 Query: 537 VDTAL--WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + + + V+L L N ++ +LQI+I++I Sbjct: 523 IGSKKISEIERNKNSVRLIGTLGKNVWQSRVNLQIMIEDI 562 >UniRef50_A5WDK1 Exonuclease RecJ n=3 Tax=Psychrobacter RepID=A5WDK1_PSYWF Length = 611 Score = 610 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 247/605 (40%), Positives = 370/605 (61%), Gaps = 54/605 (8%) Query: 15 TADLPAELP----------PLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEIL 64 T LP +LP P L RL+ +RG++S Q+L+ + +LP Q LS V++AV ++ Sbjct: 9 TGTLPDDLPACFTQMYQQAPTLTRLFLARGIQSDQDLDYGLSALLPAQGLSDVDEAVTLM 68 Query: 65 YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124 A RI++VGDFD DGATSTAL + + +G + +D++VP+RF+ GYGL+PE+V Sbjct: 69 DEAIEAQRRILIVGDFDCDGATSTALMMRILSQMG-AVVDFVVPDRFKYGYGLTPEIVQL 127 Query: 125 AHAR-GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 + +I+TVDNGISSH GV+ A + GI VI+TDHHL + P A A++NPN C+ Sbjct: 128 GIEQYQPDMIITVDNGISSHEGVDKAIANGIKVIITDHHLTTKSKPNAHAVVNPNQLGCS 187 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 F SK+L GVGVAFYL+ L + R+ G + ++ LDLVALGT+ADV LD N Sbjct: 188 FESKALVGVGVAFYLLGRLAKYRREAG------RSTAQVSRYLDLVALGTIADVGVLDHN 241 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NRIL G++ IRAG+C GI ALLE+A RD QK++ D GF +GPR+NAAGR+D+M +G Sbjct: 242 NRILVNHGLAAIRAGRCSLGILALLELAGRDYQKMSVQDFGFVIGPRINAAGRMDNMRIG 301 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT---------- 353 + L+ D++ +A+ LA ELD LN+ R+ +E M+ +A + +L+ + D Sbjct: 302 IECLMADDMSDAKRLAFELDKLNKERRYVEGEMREQADEILRQLQPNSDRSQAQTTDEQS 361 Query: 354 ------------------LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-- 393 P L +Y WHQGV+GI+A R+KE +RP I FAPA D Sbjct: 362 DDSDDSLKQQAESFTDKAQPRSLILYQDNWHQGVIGIVAGRLKESHYRPAIVFAPADDTQ 421 Query: 394 ----GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRF 449 +KGS RSI G+H+RDA+ER+ +P ++ FGGHAMAAGL+L+ FK F + F Sbjct: 422 LDGQDAIKGSARSIPGIHIRDAIERIAESHPELITHFGGHAMAAGLTLKRKDFKAFAEAF 481 Query: 450 GELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ 509 EL + ++ S+ + + +DG L + +++ + L WG F P FDG F ++Q Sbjct: 482 -ELQMQSVEASVFEEQQFTDGQLLAEDFSLQFVEALTQNHIWGHGFVPPQFDGVFDVVQA 540 Query: 510 RLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQI 569 R++ ++HLK+ ++ G +D I FN D W D ++V + ++L INE++GN+++Q+ Sbjct: 541 RILKDKHLKLSLKYPGVMYPIDAIWFNYDPKKW-DYRAQQVHVLFELSINEWQGNQNIQL 599 Query: 570 IIDNI 574 ++ ++ Sbjct: 600 MVKDV 604 >UniRef50_Q2LTE9 Single-stranded DNA-specific exonuclease n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LTE9_SYNAS Length = 586 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 188/559 (33%), Positives = 296/559 (52%), Gaps = 19/559 (3%) Query: 21 ELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIV 76 + ++ + ASR +++ + L S+ + + ++ V L A +G +I+V Sbjct: 37 GIHWIMSSILASRDIQTPDDARKYLYPSLHDLHNPFLMKDMQLGVNRLIQAVYQGEKIVV 96 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+DADG TS A+ V +R + +++ Y +P+R ++GYGL+ + +D+ + A LI+TV Sbjct: 97 YGDYDADGITSVAVLVKFLRDIQ-ADVSYYIPDRIDEGYGLNRKAIDRIKEKSASLIITV 155 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D GIS + +ARSLG+ I+ DHH D+LP A A INP DC FP K LA VG+ F Sbjct: 156 DCGISDCDEILYARSLGLDTIILDHHEVSDSLPTAVASINPKRPDCPFPLKHLAAVGIVF 215 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 ++ALR LR +G++ PNL E LDLVALGT+ D+ P+ NRI G+ + Sbjct: 216 NFLIALRGNLRKEGFW--HGKPYPNLKEYLDLVALGTIGDICPMVDENRIFVRVGLELLT 273 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 GK R GI+AL E+ D Q + F+L PR+NAAGR+ V LLL D++G+AR Sbjct: 274 EGK-RVGIRALKEICGVDTQAVDTEKASFSLIPRINAAGRVGLPDDAVELLLADDMGKAR 332 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 LA +LD+ N+ R+ +E+ + E + EK R+ L M +WH GV+GI+AS+ Sbjct: 333 DLAVKLDSYNRRRRALEKNILEEIIEDLEKTISDRNRT--ALVMASEKWHPGVIGIVASK 390 Query: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 I +R+ RP I + DG KGSGRSI ++ L ++ +GGH AAG+S Sbjct: 391 IADRYDRPAILIS-LKDGIGKGSGRSIANFNIYQGLREC----EDYLISYGGHRYAAGIS 445 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 + E+ + F + E+V E + S + ++T E+ + P+G P Sbjct: 446 IMEEDIEQFAETLDEIVRENVLQSDFISATFIEAQCHLNDITHELLAQMELLAPFGSKNP 505 Query: 497 EPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYK 555 EP+ + +VG HL++ V G + I F+ + N + +A+ Sbjct: 506 EPVLCVRNVNAFSPAVVGNNHLRMRVSEA--GVSRNTIWFSQGHFIRELNDSC-LDIAFT 562 Query: 556 LDINEFRGNRSLQIIIDNI 574 IN + G +Q+ + +I Sbjct: 563 PQINTWNGASDIQLKMKDI 581 >UniRef50_D2QL07 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Sphingobacteriales RepID=D2QL07_9SPHI Length = 584 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 181/581 (31%), Positives = 296/581 (50%), Gaps = 32/581 (5%) Query: 8 RRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEI 63 +R ET + P L L RGV++ +E + + ++ ++KA+ Sbjct: 22 EQRSAIETLTSSLGVSPFLAALLVQRGVQTYEEARTFFRPEINHLHNPFEMKDMDKAIMR 81 Query: 64 LYNAF--REGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 L A +I++ GD+D DG TS AL ++S + IDY +P+R+++GYG+S + Sbjct: 82 LQMAMLPERQEKILIYGDYDVDGTTSVALVYGFLKSYHPA-IDYYIPDRYKEGYGISKQG 140 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 + A G LI+ +D GI S V A++LG+ I+ DHH PGD +P A A+++P D Sbjct: 141 IQWAAENGFSLIIALDCGIKSIDRVAEAKALGVDFIICDHHRPGDQIPDAAAVLDPKRDD 200 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 C +P K L+G GV F L+ A + I + L LDLVA+ +D+VPL Sbjct: 201 CAYPYKELSGCGVGFKLLQAFCLH---------KGIDLNELYPSLDLVAVSIASDIVPLT 251 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NR+L G+ + A R G+KAL+++A ++L ++L F LGPR+NAAGR+ Sbjct: 252 GENRVLAHYGLKHLNASP-RTGLKALIKIAGFS-RELDITNLVFGLGPRINAAGRIQHAK 309 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 V LLL ++ EA A ++ N +R+E + M +AL + E ++ Sbjct: 310 AAVQLLLAESEEEADEFAMAINKHNNSRREFDSSMTEQALEMIRGNE--SLLQAKSTVLF 367 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 WH+GV+GI+ASR E FHRP I + D GS RS+ G + +A+E L Sbjct: 368 DASWHKGVIGIVASRCIEHFHRPTIILTQSNDKAA-GSARSVPGFDVYEAIEECADL--- 423 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 + +FGGH AAG+++ D F+++F E+V + L + D PL +E++ ++ Sbjct: 424 -LEQFGGHTFAAGMTMSVDNIDAFRKKFEEVVASRIKEEHLTPLIDIDLPLDFSEISDKL 482 Query: 482 AQLLRDAGPWGQMFPEPLFDGH--FRLLQQRLVGERHLKVMVEPVG-----GGPLLDGIA 534 +++R GP+G +P F + + + ++ E+HLK+ V G I Sbjct: 483 YRIVRQMGPFGPHNLQPTFMTEDVYLVSEPIIMKEKHLKINVRQGDTTARRSGQTFTAIG 542 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 F + + + + Y++D N F GN SLQ+++ +I Sbjct: 543 FGMAHIADLLSPGKPFSICYQVDQNHFNGNVSLQLMLKDIK 583 >UniRef50_C6P9C5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P9C5_CLOTS Length = 819 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 182/584 (31%), Positives = 313/584 (53%), Gaps = 35/584 (5%) Query: 1 MKQQI---QLRRREVDETADLPAELPPLLRRLYASRGVRS----AQELERSVKGMLPWQQ 53 M ++ + E + +L + + +RG + L + M Sbjct: 1 MAYNWVSKKILNENLVEKIKIKYKLKEYIAQTIVNRGYDDLKKVDEYLNPDLNMMHSPFL 60 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L G+EKA ++ + +I + GD+D DG T T++ ++ LG +++++ +P+R ++ Sbjct: 61 LDGIEKASSVIKYHIEKNNKITIYGDYDVDGITGTSILYKTLKKLG-ADVNFYIPDRLQE 119 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG++ +++ + G+ LI+TVD GI+S VEHA+ LGI +IVTDHH D LP A Sbjct: 120 GYGINLNAIEKIYNLGSSLIITVDCGITSVIEVEHAKKLGIEIIVTDHHQVPDVLPDATC 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 +INP++++C +P + L+GVGVAF L LAL + + LD+VALGT Sbjct: 180 VINPHIKNCTYPYRELSGVGVAFKLCLALIG---------------DDALDYLDIVALGT 224 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 VAD+VPL NRI+ +G+ ++ K + G+KAL+ V+ + + + +GF L PRLNA Sbjct: 225 VADIVPLTGENRIIVKEGLKMMKNSKNK-GLKALINVSGLNNKDINTYHVGFVLAPRLNA 283 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGRL+ V LL D+ EA +A L++ N R+E+E+ M EA+ E + Sbjct: 284 AGRLESAVSCVNLLTTDDDIEANRIAEYLNSENIKRQELEKKMLDEAIVQVET--KIDLD 341 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 + +Y +WH G++GI++SRI E+++RP I + GD T KGSGRSI+G ++ DA++ Sbjct: 342 KEKFIVLYSEDWHPGIIGIVSSRITEKYNRPSILISICGD-TGKGSGRSIKGFNIYDAIK 400 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 ++ FGGH MAAG+++++D+ + F+ + E L+ L + + + Sbjct: 401 ----YAGDCLIGFGGHEMAAGITIKKDEIESFKDKLNEYAESKLNDIDLIPTIEIETSIE 456 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVG-ERHLKVMVEPVGGGPLLD 531 + +E A L P+G P P + H + Q VG +HL+++ + D Sbjct: 457 NETIDLEGANQLSLLEPFGNSNPMPAYIINHLHVKQTYTVGNNKHLRIIAQ--KNDMCYD 514 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 I F++ + + +A +++NE+ G++ ++II +I Sbjct: 515 IILFHMGSEANKFKEGYIIDIAGYINVNEWNGDKKVEIIAKDIK 558 >UniRef50_B2RMC6 Single-stranded-DNA-specific exonuclease n=53 Tax=Bacteria RepID=B2RMC6_PORG3 Length = 584 Score = 605 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 188/592 (31%), Positives = 310/592 (52%), Gaps = 35/592 (5%) Query: 1 MKQQIQLR-----RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPW 51 M L R + L P++ L A RG+ S +E +R + + Sbjct: 1 MNYNWNLEPFTAEERSLGTIFCRELRLAPVVGCLLARRGIASVEEAKRFFRPRLEDLHDP 60 Query: 52 QQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCS--NIDYLVPN 109 + ++KAV L A +I++ GD+D DG T+ AL +R+ GCS +DY +P+ Sbjct: 61 FLMKDMDKAVARLNRAVGRKEKIMIYGDYDVDGTTAVALVYKYLRATGCSETQLDYYIPD 120 Query: 110 RFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLP 169 R+++GYG+S +D AH+ G +LI+ +D GI + V +A+SL I I+ DHH P +TLP Sbjct: 121 RYDEGYGISYRGIDLAHSLGTKLIIVLDCGIKAVEKVAYAKSLDIDFIICDHHNPDETLP 180 Query: 170 AAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLV 229 A A+++ D +P + L+G GV F M A N+ L LLDLV Sbjct: 181 DAVAVLDAKRADNTYPYEHLSGCGVGFKFMQAYAR---------SNNLPESKLLPLLDLV 231 Query: 230 ALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGP 289 A+ +D+VP+ NRIL + G+ ++ C G++A+++V +++ +D+ F +GP Sbjct: 232 AVSIASDIVPIMGENRILAYYGLRQLNKRPC-LGLQAIIDVCGLKKRRIDMNDIVFKIGP 290 Query: 290 RLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLER 349 R+NA+GR+ + V LLL + EA+ +D N R+E+++ + +A+ + +L Sbjct: 291 RINASGRMMNGGKAVELLLSQDAVEAQSRTANIDEYNDQRRELDKDVTEQAIDILGELS- 349 Query: 350 SRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMR 409 D L +Y PEWH+GV+GI+ASR+ ER+ RP I +GD + GS RS+ G + Sbjct: 350 --DVDKKILVIYRPEWHKGVIGIVASRMTERYSRPTIVMTKSGD-FISGSARSVGGFDVY 406 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 A+E L ++ FGGH A+GL+++E+ + F++ + E + P LL ++ D Sbjct: 407 KAIEHCKDL----LVNFGGHPFASGLTIKEENLETFRKMITDYAEEAVSPELLVPQIDVD 462 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH--FRLLQQRLVGE--RHLKVMVEPVG 525 +S E+ ++ L+ GP+G +P+F + R VG+ HLK+ V Sbjct: 463 AEISIEEVNYKLLDNLKRMGPFGPENSKPVFISRQLYDAGGSRAVGKASEHLKIDVRVGS 522 Query: 526 GGPL-LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 G + GIAFN +L Y ++ NEF GN+SLQ+++ +I P Sbjct: 523 GERHPVSGIAFNQAGHCNEIKNG-SFRLCYTIEENEFNGNKSLQLLVRDIKP 573 >UniRef50_C9LKW7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKW7_9FIRM Length = 667 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 178/591 (30%), Positives = 294/591 (49%), Gaps = 38/591 (6%) Query: 1 MKQQIQLRRREVDETADLPA-----ELPPLLRRLYASRGVRSAQELERSV----KGMLPW 51 +K + R +E +P +P R+ RG+ + ++L + + Sbjct: 6 IKPRWVFRGASSEEKVAVPDFFNLNNIPEGTARIMMRRGISTEEKLTHFLYDTLDNLSDP 65 Query: 52 QQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRF 111 + G+++AV + A +I++ GD+D DG TST++ V +R LG +++++ +P R Sbjct: 66 FLMKGMQQAVRRIIQAIDLKEKIVIYGDYDVDGITSTSICVRCLRKLG-ADVNFYIPLRE 124 Query: 112 EDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAA 171 E+GYGL+ + +++ G L++TVD GISS V A + +I+TDHH P LP Sbjct: 125 EEGYGLNRDAINKLSKEGVSLLITVDCGISSADLVAEAPQS-LDIIITDHHQPPKVLPDC 183 Query: 172 EAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 A++NP+ DC +P K LAG GVAF L + L ++ + + ++LVAL Sbjct: 184 VAVLNPHQEDCPYPYKELAGCGVAFTLCRGIYKELYNEDYKEN-----------IELVAL 232 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQK----LAASDLGFAL 287 GT+ADVV L NRIL +GM+R + G+ ALL + + L A + F L Sbjct: 233 GTIADVVSLTGENRILVKEGMARFLLTPIK-GLSALLRITGLVNEDTKEILHADYISFGL 291 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 PRLNAAGR+ GV L+ ++ EA LA L N R+ IE+ + EAL +L Sbjct: 292 APRLNAAGRITHAKYGVELMTTESGEEAEALAQILCDTNIERQHIEREIYEEALQRIAEL 351 Query: 348 ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLH 407 + D + L + +WH GV+GI+ASRI E +HRPV+ +G KGS RSI + Sbjct: 352 QIQDDLV---LVIDGKDWHPGVIGIVASRILELYHRPVLVIT-VRNGVGKGSCRSISAFN 407 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 + +ALE++ G ++++GGH MAAG S+ ++ F++R + + + Sbjct: 408 IHEALEKMA----GFLIQYGGHKMAAGFSIPAERISEFRKRINDYAKGIITVDDRIPVLE 463 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGG 526 + L E+ +E + L P+G P+PLF + R +G Sbjct: 464 LEESLPLDEVNIEFIRSLDLLEPYGSDNPKPLFASFRVFVETARRIGNDRKHFKCRLSQN 523 Query: 527 GPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 ++ I + + P V + Y+ +I+++ G +Q+I +I P+ Sbjct: 524 REPVEAIFWGIGDK-DPCCPGDIVDIVYEPEIHDWYGEH-VQLICKDIRPV 572 >UniRef50_Q87EB5 Single-stranded DNA exonuclease n=23 Tax=Bacteria RepID=Q87EB5_XYLFT Length = 613 Score = 600 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 261/581 (44%), Positives = 372/581 (64%), Gaps = 17/581 (2%) Query: 6 QLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILY 65 ++ RR P +PPLLRR+Y +RG + + +L LS ++ A +L Sbjct: 14 KIIRRLSLPLVVWPDNVPPLLRRVYTARGCADPVTAQPCLAQLLSPAMLSNMQAATVLLT 73 Query: 66 NAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA 125 + RI+VVGDFD DGAT+ A++V +R LG N+ + VPNR GYGLS +V++ Sbjct: 74 EVIKANGRILVVGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEEL 133 Query: 126 HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFP 185 L+VTVD+GI+ HAG+ A++ G V+VTDHHLPG+TLPAA+ I+NPNL FP Sbjct: 134 APLQPALLVTVDHGIACHAGIAAAKARGWKVLVTDHHLPGETLPAADVIVNPNLPGDLFP 193 Query: 186 SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAI-----------PNLAELLDLVALGTV 234 SK+LAGVGV FY++LALR L + P+L LLDLVA+GTV Sbjct: 194 SKTLAGVGVIFYVLLALRARLYPAARAECEGQETRIHSSISQKNRPDLTSLLDLVAVGTV 253 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+VPLD NNR L G+ R+R G+ G++AL+EV+ RD +L A+D+GFAL PRLNAA Sbjct: 254 ADLVPLDTNNRALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAA 313 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALT-LCEKLERSRDT 353 GRL+DM++G+ LLL ++ AR +A L+ +N R+ ++QGM +A + + + +S Sbjct: 314 GRLEDMALGIELLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAEQAVAQAMAQSGGV 373 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG--TLKGSGRSIQGLHMRDA 411 LP + ++ P+WH GV+G++AS++K++ HRPV+A APA G L+GS RSI GLH+RD Sbjct: 374 LPMAVCLFDPDWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDV 433 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L LD+ YPGM+ KFGGHAMAAGL+L+ + +F++ F V +D ++LQ E+ SDG Sbjct: 434 LVALDSGYPGMIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGE 493 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLD 531 L+ E+ A+ LR GPWGQ FPEPLFDG F +LQ R++ ERHLK+ V G L+ Sbjct: 494 LAADELDALHARALRLGGPWGQGFPEPLFDGEFEVLQWRVLKERHLKMEVRYSGRHDALN 553 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIID 572 I FN D R ++LAY+L +++RG ++Q+I++ Sbjct: 554 AIYFN---GWQGDPPARRLRLAYRLVCDDYRGGDAIQLIVE 591 >UniRef50_C6NUA0 Single-stranded-DNA-specific exonuclease recJ n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUA0_9GAMM Length = 577 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 249/577 (43%), Positives = 343/577 (59%), Gaps = 16/577 (2%) Query: 4 QIQLRRREVDETADLPAE--LPPLLRRLYASRGVRSAQELERSVKGMLP---WQQLSGVE 58 + Q R E L P+L RLYA+R VR ++L V+ + P Q L G+ Sbjct: 3 RWQQRPLLAPEILAEAKRVALDPVLARLYAARAVRETRQLRLDVEQLSPGEGDQGLLGLG 62 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 A E+L +A R+ + +VGD+D DGAT+TAL A+ G + Y+VP+RF GYGL+ Sbjct: 63 AAAELLADAVRQQRVVCIVGDYDCDGATATALLHEALSLCGARALRYVVPDRFRWGYGLT 122 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 PE+V Q A +++VTVDNGI+S GV A++ + VI+TDHHLPG LPAA+AI+NP Sbjct: 123 PELVAQLPAD-TEIVVTVDNGITSVDGVAAAKARNLQVIITDHHLPGAVLPAADAIVNPR 181 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 C FP KS +GV VAFYL A+R L D+G+ P+ +L DLVALGTVADVV Sbjct: 182 QPGCPFPWKSSSGVAVAFYLAAAVRRRLLDRGYL---GAGAPHFGQLWDLVALGTVADVV 238 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 L+ NNRIL QG+ R+R+G+ RPG+ ALLE A + + A+ LGF L PR+NAAGRL+ Sbjct: 239 ALEHNNRILVQQGLKRLRSGRARPGLAALLECAGVEPAAVTAATLGFTLAPRINAAGRLE 298 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 DM +G+ LLL + EA LA LD LN+ R+ IE M A + + L L GL Sbjct: 299 DMGLGIRLLLSQDRAEAAELARTLDELNRQRRAIETQMSEAAQQIVDDLPDCGHNL--GL 356 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 ++ PEWH GV+GI+A R++ER+HRP IAFAP GDG L+GSGRSI GLH+RD+L Sbjct: 357 CVFQPEWHAGVIGIVAGRLRERYHRPAIAFAPVGDGFLQGSGRSIAGLHLRDSLADCVAR 416 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 P ++ +FGGHA AAGL L F + ++ E L L+ V DGPL + + Sbjct: 417 APHLLERFGGHAAAAGLRLRRAHLDEFVALWNTVLAERLTTEDLEESVFHDGPLESSSLD 476 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD 538 +E+A+ L AGPWG FPEPLF G FR+ +++ + H ++ ++ G G + I F Sbjct: 477 LELARRLEAAGPWGNGFPEPLFWGRFRICERKALPGGHWRLHLDD-GAGRRFEAIRFRS- 534 Query: 539 TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 V+ Y ++N + G LQ+ + + Sbjct: 535 ---PELPPGPWVEALYVPEVNRYAGTERLQLRLHALR 568 >UniRef50_D1BND6 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Veillonella RepID=D1BND6_VEIPT Length = 661 Score = 600 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 182/584 (31%), Positives = 299/584 (51%), Gaps = 32/584 (5%) Query: 2 KQQIQLRR--REVDETADLPAELPPLLRRLYASRGVRSAQ---ELERSVKGMLPWQQLSG 56 K++ +L RE + + P++ +L +R + + L+ ++ +L L Sbjct: 5 KKRWRLCEGDREKENILIRELGVNPIVAKLMVNRHIDVDEGRRFLQGTLSDLLDPFTLKD 64 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++ AV ++ I++ GD+D DG T+T++ ++ LG +++ Y +P R +GYG Sbjct: 65 MDVAVSLVLETIESHKPIVIYGDYDVDGITATSVLYRFLKKLG-ADVTYYIPERQSEGYG 123 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ E + RG L++TVD GISS+ VE R I +I+TDHH D +P A+A+IN Sbjct: 124 LNLEALKHLIERGTDLVITVDCGISSYDIVEAVRDR-INMIITDHHTAPDVIPRAKAVIN 182 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 +DC + K+L+GVGVAF L AL + + D+ LD+VALGTVAD Sbjct: 183 HKQKDCPYKDKNLSGVGVAFKLCQALWLTKHGEWYLDD-----------LDIVALGTVAD 231 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 VVPL NRI+ G+ ++ + GI L++VA + + + +G+ L PRLNAAGR Sbjct: 232 VVPLVGENRIIVKSGLEKMNSYP-NLGINKLIDVAGLHERTITSGHIGYTLAPRLNAAGR 290 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + + V LL+ D+ A +A EL+ N+ R+E+E+ + A D + Sbjct: 291 VTHATRAVELLVTDDADIAEAIAEELNETNRERQELERNIHELARIDVANQGHKADYVT- 349 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 + EWH GV+GI+ASR+ E F++P + + DG KGS RSI G ++ DAL+ Sbjct: 350 --IVAGEEWHPGVIGIVASRLVEEFYKPTLVISI-HDGVGKGSCRSIDGFNIYDALKSC- 405 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 ++L+FGGH+ AAG S++ ++ + R + E + V D L + Sbjct: 406 ---EDILLQFGGHSAAAGFSIDANRIDELRYRLTKYCKEVVTAEEYIPVVAIDAELPVDD 462 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGI 533 + +++ + D P+G P+F + L+G + H KV+ G LD I Sbjct: 463 IDVDIIDRVSDLEPYGMANSTPVFAIMEATVQDIMLMGQLKNHCKVIFATSNG--TLDAI 520 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 A+N V++A+ L NE++G S Q++I I P+ Sbjct: 521 AWNCPDLFRSIFVGTVVKVAFSLQKNEWQGLVSPQLMIQAIEPL 564 >UniRef50_A5UUU1 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Chloroflexaceae RepID=A5UUU1_ROSS1 Length = 572 Score = 600 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 184/580 (31%), Positives = 294/580 (50%), Gaps = 26/580 (4%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG---MLPWQQLSGVE 58 ++ + + A A LPPL+ L RGVRS + + + G+E Sbjct: 10 NKRWHILETPPEFIAACRA-LPPLIAALLYQRGVRSDAAMREFFSADYRLNDPFSMRGME 68 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 AV+ + A + + V GD+D DG T+ L V A+ ++G + Y VP+R +GYGL+ Sbjct: 69 TAVQRIAAAIHDHELMAVYGDYDTDGVTAVTLLVQAISAMGGLILPY-VPHRIREGYGLN 127 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 E +D G +L++TVD GIS+ HAR++GI +I+TDHH P LP A AIINP Sbjct: 128 IEAIDALAREGVRLLITVDCGISNVREAAHARAVGIDLIITDHHHPPARLPDAVAIINPR 187 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 C++P K L GVG+AF L+ AL + +LLD+VALGTV D+ Sbjct: 188 QPGCSYPFKHLVGVGIAFQLVRALARR---------GFRSTLQKDDLLDVVALGTVTDMG 238 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NR+L G+ + A + RPG++AL++ A ++ ++D+ F LGPRLNA+GR+D Sbjct: 239 PLIGENRVLVTHGLKALNAAQ-RPGVRALIQAAGMTPGRVTSTDISFGLGPRLNASGRID 297 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 + + LLL + A+ LA+EL+ N+ R+E+ + + +A + L + L + Sbjct: 298 NARLSYELLLAEEFETAQRLAHELNLQNRQRQELSKTVHEQASAQIQALGKQNQRL---I 354 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + ++ GVVG++A+R+ E + RP + G+ +GS RS+ G + DAL L Sbjct: 355 ILDGTDYPAGVVGLVAARLVEEYGRPTVLI-ERGEQWSRGSARSVPGFSIIDALTDCADL 413 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 + +FGGH AAG ++ D+ + R E L LL + D + PA ++ Sbjct: 414 FE----RFGGHTEAAGFTIATDRLPALEDRLLRYAAEHLSDDLLMPGITIDAEVPPASLS 469 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAF 535 E+ L P+G P+P+ ++ G +HLK+ + G D IAF Sbjct: 470 YELLGELAKLEPFGHGNPQPVLMSRRLQVTGAWPRGSEGQHLKLRLVGADGSGPFDAIAF 529 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 R + + Y L+ +E+ G+ SLQ+ + + Sbjct: 530 RFGHLARYFEQPRWIDIVYTLEADEWNGSPSLQLNVKDFR 569 >UniRef50_Q2SXD4 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Burkholderia thailandensis RepID=Q2SXD4_BURTA Length = 564 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 265/555 (47%), Positives = 357/555 (64%), Gaps = 15/555 (2%) Query: 21 ELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 L P+L RLYA+RG+ S ++E ++ ++P QL G A +L +A G +++VV D+ Sbjct: 21 GLHPVLARLYAARGIASPADVETALSRLVPPAQLKGCADAAALLADALEAGRKMLVVADY 80 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 D DGAT+ A++V +R G + IDYLVPNRFE GYGL+PE+V+ A AR L++TVDNGI Sbjct: 81 DCDGATACAVAVRGLRMFG-AKIDYLVPNRFEYGYGLTPEIVELAAARKPDLLITVDNGI 139 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 +S GV A + GI V+VTDHHLPGDTLPAA AI+NPN C FPSK +AGVGV FY++L Sbjct: 140 ASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQPGCAFPSKHIAGVGVMFYVLL 199 Query: 201 ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKC 260 ALR LR +G F + P L LLDLVALGTVADVV LD NNR+L QG+ RIR G+ Sbjct: 200 ALRAELRARGAFGDAR-PEPRLDGLLDLVALGTVADVVRLDGNNRVLVAQGLQRIRNGRM 258 Query: 261 RPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLAN 320 +PG+ AL A RDA+ + DLGF LGPRLNAAGRL DMS+G+ L D++G A LA Sbjct: 259 QPGVAALFRAAARDARSASGFDLGFGLGPRLNAAGRLSDMSLGIECLTTDDVGRAWELAQ 318 Query: 321 ELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKER 380 +LDA+N+ R+EIE GMQ +AL ++ + + +++PEWHQGV+GI+A R+KER Sbjct: 319 QLDAMNRERREIEAGMQQQALADLASVDPAE---AATITLFNPEWHQGVIGIVAGRLKER 375 Query: 381 FHRPVIAFA-PAGDGT-LKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLE 438 FHRP FA G G +KGSGRSI G H+RDA++ + P +++ FGGHAMAAG++L+ Sbjct: 376 FHRPAFTFAHADGSGARVKGSGRSIPGFHLRDAIDLISKREPDLIVTFGGHAMAAGVTLD 435 Query: 439 EDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEP 498 F F + EWL L + +DG L A T +V +LL A WGQ FP P Sbjct: 436 TGNVPRFAAAFEAVAREWLSDDALARVIETDGDLEDAYFTPQVVELLD-AAVWGQGFPAP 494 Query: 499 LFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDI 558 LF G F + Q LV ++HLK ++ + G + I FN L LA++L Sbjct: 495 LFSGEFDVASQALVKDKHLK--LQLMRGRQRFNAIWFNHAEPL-----PARATLAFRLAS 547 Query: 559 NEFRGNRSLQIIIDN 573 + + G +Q+I+++ Sbjct: 548 DTWNGTTRVQLIVEH 562 >UniRef50_D2MJC9 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJC9_9BACT Length = 582 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 189/579 (32%), Positives = 299/579 (51%), Gaps = 30/579 (5%) Query: 5 IQLRRREVDETADLP--AELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSGVE 58 ++R E + A L L PL + RGV ++ + + L +E Sbjct: 24 WRVRSVEQERVAALAGVLGLSPLTATVLCGRGVVEPEQAKAWLASSGGSTHDPFALPDME 83 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 +AV+ L+ A + RI GD+D DG +T+L +L RS+G + + +P+R E+GYGL Sbjct: 84 RAVDRLHLAIQRCERICFYGDYDVDGMAATSLHLLFWRSVG-AQAEVYIPDRQEEGYGLH 142 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 + + G L++T D G +S+ +E ARSLG+ VIVTDHH +P A INP Sbjct: 143 ESAIRKLGHGGVSLLLTADCGTTSYREIEVARSLGMDVIVTDHHQLQSRMPEPVAFINPY 202 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 D +P + L G+A+ ++ A + A + DLVAL ++AD+V Sbjct: 203 RPDSVYPFQGLCSGGLAYKVVEAYAR---------KYGAADVPVESFRDLVALSSIADMV 253 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NR+L G++++ G R GI+AL + + +A +GF + PRLNAAGRL Sbjct: 254 PLRDENRVLVRDGLAQVAQGN-RCGIRALTQDLGLNGTC-SAGTIGFRVAPRLNAAGRLA 311 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 +GV LL D+ A LA +L+ LN+ R+EIE+ M EA+ E ++ P + Sbjct: 312 HAGLGVRLLTADSEPVALQLAQQLEELNRRRREIEEAMTREAIAQVEAGDQ-----PHAI 366 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + WH GVVGI+A+R+ ER+HRP A DG KGS RS+ G + AL + Sbjct: 367 VVGAEGWHSGVVGIVAARLVERYHRPAAVVAFDRDGLGKGSVRSVAGFDVCQALRQCQRD 426 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 ++ FGGH MAAGL++ + + F +RFGE V +D SL + D ++ A++ Sbjct: 427 ----LVAFGGHPMAAGLTVRREAYADFSRRFGEGVEGAMDDSLKVPTLDVDAAVALADVQ 482 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 + L P+G PEP +L++++VG+ HLK++V G P L+ I F + Sbjct: 483 FPFVRELERLQPFGMGNPEPTLMSRGVSVLEKKVVGDNHLKLVVRQPGSVP-LESIGFRM 541 Query: 538 -DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 A D G + + ++NE++G+ +Q+ + ++ Sbjct: 542 GGLAHAIDAGHGRIDAVFTPELNEWKGSTRIQLRLRDVR 580 >UniRef50_Q12ES6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Polaromonas sp. JS666 RepID=Q12ES6_POLSJ Length = 600 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 261/604 (43%), Positives = 363/604 (60%), Gaps = 42/604 (6%) Query: 3 QQIQLRRREVDETADLPAE-LPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAV 61 +IQ+R L + PLL +LYA+RGVRS EL+ + +LP L G +A Sbjct: 1 MKIQVRDVPPRSVWALQQGGVHPLLAQLYAARGVRSMDELDDGLGKLLPPASLRGTREAA 60 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 +L +A G +I VV D+D DGAT+ A+++ +R LG N+ YLVP+R DGYGL+P + Sbjct: 61 RLLADAMAAGQKICVVADYDCDGATACAVALRGLRLLGAQNVGYLVPDRVIDGYGLTPPI 120 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP-----GDTLPAAEAIIN 176 ++ A GA ++VTVDNGI+S GV A++LG+ V+VTDHHLP LPAA+ I+N Sbjct: 121 AERVKATGADVLVTVDNGIASLEGVARAKALGMQVLVTDHHLPALKDGQVVLPAADVIVN 180 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERN-------------------- 216 PN DC+F SKS+AGVGV FY++LALR LR++G F Sbjct: 181 PNHPDCSFESKSMAGVGVMFYVLLALRAELRERGVFGRPAAGPPPGGTAPSGGSTAHEVA 240 Query: 217 ----IAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVAN 272 I P L LL LVALGTVADVV LDANNR L QG+ RIRAG G+ L A Sbjct: 241 SVGAIPQPKLDTLLPLVALGTVADVVKLDANNRRLVAQGLKRIRAGALPAGLAGLFTAAG 300 Query: 273 RDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEI 332 R A D GFALGPR+NAAGRL DM++G+ LL D+ A LA LD +N+ R++I Sbjct: 301 RHAALATTFDFGFALGPRINAAGRLSDMTLGIECLLTDDAARADELARMLDGINRERRDI 360 Query: 333 EQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAF---- 388 E GM+ +A + + + P +A++ PE+H+GVVGI+ASRIK++ HRP F Sbjct: 361 EAGMREQAQLAADAMIDEDEEPPPAIAIFDPEFHEGVVGIVASRIKDKLHRPTFVFAASQ 420 Query: 389 APAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQR 448 AP + LKGSGRSI G H+RDAL+ + +PG++L+FGGHAMAAG ++ E++F+ F+Q Sbjct: 421 APGKEHELKGSGRSIAGFHLRDALDLVAKRHPGVLLRFGGHAMAAGCTIAEERFEQFEQA 480 Query: 449 FGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ 508 ++ EWLD + L + +DGPL +V L WGQ F P F ++ Sbjct: 481 LQQVAHEWLDAATLTRRLDTDGPLPAEYRRTDVVDTLHR-EVWGQGFAAPTFSEEVEVVS 539 Query: 509 QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQ 568 QRLVGE+HL + ++ G +DGI F TAL V+LA++LD +E++G + ++ Sbjct: 540 QRLVGEKHLALKLKHQ--GQPVDGIWFGHTTAL-----PARVKLAFRLDADEWQGVKRVR 592 Query: 569 IIID 572 +++ Sbjct: 593 FLVE 596 >UniRef50_A0L8H3 Exonuclease RecJ n=2 Tax=Proteobacteria RepID=A0L8H3_MAGSM Length = 592 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 198/569 (34%), Positives = 304/569 (53%), Gaps = 21/569 (3%) Query: 19 PAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVEKAVEILYNAFREGTRI 74 L L L ASR + A E + + K + L + AVE L A G +I Sbjct: 30 ALGLSHYLAPLLASRKLCGAGETRQFLAPRLKDLADPYDLLDMRVAVERLAEALERGEKI 89 Query: 75 IVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV 134 V GD+D DGATS+AL + LG + + +PNR +GYG S + G L++ Sbjct: 90 AVFGDYDVDGATSSALLMRYFHELGVA-LRVYIPNRLTEGYGPSVGAMRTLAEEGVSLVI 148 Query: 135 TVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGV 194 TVD GI++ ++ A++LG+ VI+TDHH + LP A A+INPN +D FP K LAGVGV Sbjct: 149 TVDCGITAFEPLQEAKALGLAVIITDHHQAREQLPEALAVINPNRQDEPFPYKELAGVGV 208 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 AFYL++AL LR++GWF++ P L LLDLVA+GTVADV + NR L G+ Sbjct: 209 AFYLVMALNRLLRERGWFNK-GRQEPVLKPLLDLVAVGTVADVAGMRGLNRALVTTGLHV 267 Query: 255 IRAGKCRPGIKALLEVANR--DAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNI 312 + + PG+ AL++V + ++L ++ +GF LGPRLNA GRL ++G LL C + Sbjct: 268 LSE-RSNPGLAALMQVVGIGEEVKELTSTHIGFQLGPRLNAGGRLGQGALGYQLLSCHDQ 326 Query: 313 GEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGI 372 +A +A LDA N+ R+EIE+ + +A+ E ++ L GL + WH GV+GI Sbjct: 327 AQALPIAQTLDASNKERQEIERTLLKQAMDQVEA--ENQPILRRGLVVAGEGWHAGVIGI 384 Query: 373 LASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 +ASR+ +++ +P + A + G KGSGRSI G+++ A+E + FGGH + Sbjct: 385 VASRLCDKYSKPALVIAIDAETGVGKGSGRSIPGINLLAAIEA----GAAHLEHFGGHKV 440 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 AAGL+++ +K F + F + +T S + D L E+ VA+ ++ P+ Sbjct: 441 AAGLTIQREKIPAFMEAFEDHLTRHYQASAFFPRLTVDAELPLDELDFAVARQIQSFSPF 500 Query: 492 GQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD----NG 546 G PEP+F L +++ ERHL + + ++ I F + D Sbjct: 501 GPGNPEPIFILPRVSLRGIKVLKERHLAMSIVCPRTHQQIEAIGFRMAPGPIVDAIQAGD 560 Query: 547 VREVQLAYKLDINEFRGNRSLQIIIDNIW 575 V +A KL I +RG +++ + ++ Sbjct: 561 VAVWDVAGKLTIETWRGREKMKLQLSDVR 589 >UniRef50_B6BWW7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=beta proteobacterium KB13 RepID=B6BWW7_9PROT Length = 563 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 222/573 (38%), Positives = 346/573 (60%), Gaps = 16/573 (2%) Query: 5 IQLRRREVDETAD---LPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAV 61 ++L +++DE+ + P++ ++ A+R + S+++++ ++ +L +L ++A Sbjct: 1 MKLINKKIDESIKQKLINTGRHPIVSQILAARNISSSKDVDYPIEQLLSPNKLLNCDEAA 60 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 + L +A ++ +I +VGD+DADGA+ +++++L R LG +D+L+P+RF++GYGLS E+ Sbjct: 61 DFLSDAIQKQKKITIVGDYDADGASGSSVAILGFRLLGIE-VDFLIPSRFKNGYGLSSEI 119 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 VD A+ + +I+TVDNGI+S G+ HA LGI VIVTDHHL + LP A+ IINPN + Sbjct: 120 VDMANTKETDIIITVDNGIASFEGISHANDLGIDVIVTDHHLQAENLPDAKFIINPNQKK 179 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 C+FPSK+L G GV FYL++A+R LRDQ +FD N+ PNL ++LDLVAL T+AD+V +D Sbjct: 180 CSFPSKNLCGAGVVFYLLIAIRKKLRDQNYFDNLNVDEPNLLQILDLVALATIADMVKMD 239 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NNR+L G+ IR+ +C G+K L + N+ SDL F + P++NAAGR+DDMS Sbjct: 240 FNNRLLVHHGLRVIRSQQCNLGLKKLFMLTNKSHLTALTSDLSFVIAPKINAAGRMDDMS 299 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 +GVA L N EA A +L N RK+ E MQ EA + + T + ++ Sbjct: 300 LGVACLTATNENEAHEYARQLIEFNFQRKKTETDMQEEAQAIMRGFNNNNKT----ICLF 355 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 + +WHQGV+GILASR+KE F+RPVI FA G LKGS RSI+G H+RDA++ + P Sbjct: 356 NDKWHQGVIGILASRLKENFYRPVIIFAQDESGYLKGSARSIEGFHVRDAIDLVAKKNPE 415 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 +++ FGGHAMAAGL++++D+F F Q F E+ L P L + D + + + + Sbjct: 416 VIVTFGGHAMAAGLTIKKDRFDSFVQSFEEVAESILKPEDLSEIIEVDDSILQDNINVHI 475 Query: 482 AQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL 541 + WG F PLF F + Q+++ H K+ + + I FN Sbjct: 476 IDEINQLE-WGNGFQRPLFTDTFDCVDQKVIKGLHTKLNL--TKHNQTFESIFFN----- 527 Query: 542 WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + ++ V+ Y L+ N+F + + I I Sbjct: 528 YQESIPDRVKCLYTLETNKFNNTNKVTLNIKKI 560 >UniRef50_Q11NW2 Single-strand DNA specific exonuclease n=13 Tax=Bacteroidetes RepID=Q11NW2_CYTH3 Length = 574 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 171/584 (29%), Positives = 300/584 (51%), Gaps = 28/584 (4%) Query: 2 KQQIQ--LRRREVDETADLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLS 55 K+ I L +E + + + + R + + +E S+ + + Sbjct: 6 KRWITKTLPAQEKARSLAEALNINAYISAMLVQRNIETFEEAKNFFRPSLSQLHDPFLMR 65 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 +EKAV L A RI++ GD+D DG TS ++ +++ +NI+Y +P+R+++GY Sbjct: 66 DMEKAVTRLMQAIAGNERILIYGDYDVDGTTSVSVFYGFLKNY-YTNIEYYIPDRYKEGY 124 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G+S ++ A A LIV++D GI + V +A S GI I+ DHH PG+ LP A AI+ Sbjct: 125 GVSKAGIEYARDTNATLIVSLDCGIRAVEMVAYANSFGIDFIICDHHNPGNELPDAVAIL 184 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P +C++P K L+G GV F L+ AL T + L E +DL+A+ + Sbjct: 185 DPKQNNCSYPYKELSGCGVGFKLLQALCTR---------AGYSSELLFEQIDLLAISICS 235 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VP+ NRILT+ G+ ++ RPGI+A+++V+ + + + + F +GPR+NAAG Sbjct: 236 DIVPITGENRILTYFGLQKLNESP-RPGIQAIVDVSGL-KKAIDVNTVVFTIGPRINAAG 293 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+D V LLL +N +A A ++ N R+E ++ + EAL + + + Sbjct: 294 RIDHAFAAVELLLAENKTDAANFAANINDHNLVRREFDETITGEALGMIQS--NANAATA 351 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 +Y +WH+GV+GI+ASR E +HRP I + +G + GS RS+ + +A+++ Sbjct: 352 SSTVLYKNDWHKGVIGIVASRCIEHYHRPTIILTQS-NGKVAGSARSVPDYDLYEAIDKC 410 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L +++FGGH AAGL++EE + F+ +F E+V+ + L + D L Sbjct: 411 SDL----LIQFGGHKYAAGLTMEEKNIEAFRTKFEEVVSATIRKEQLIPMISIDLELPLN 466 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ--QRLVGERHLKVMVEPVGGGPLLDGI 533 ++ ++R GP+G +P+F + R++ ++HLK+ + I Sbjct: 467 QIDSRFFNIVRQMGPFGPQNMQPIFVSRNVMDDGTSRILKDKHLKLNIRQ-QDSVTYPAI 525 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 + + + Y L+ NEF G +++Q++I +I I Sbjct: 526 GWQMHAFYDRIKNKEPFDICYSLEENEFNGKKTIQLMIRDIQFI 569 >UniRef50_D2RLC4 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLC4_ACIFE Length = 782 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 181/574 (31%), Positives = 292/574 (50%), Gaps = 30/574 (5%) Query: 9 RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSGVEKAVEIL 64 R T + PLL + R + ++++ ++ +L +++AV+ + Sbjct: 13 REPQIRTLCRELGISPLLAGILVRRDLTEPEKVKEFLEGKTQPYYDPFRLKDMDRAVDRI 72 Query: 65 YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124 A ++G + + GD+D DG ++++L L +++ G + +D VP R +GYGL+ +++ Sbjct: 73 LQALQQGEPMTIYGDYDVDGTSASSLLYLFLQARG-AKVDVYVPRRDREGYGLNGPALEK 131 Query: 125 AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNF 184 ARG +L++TVD GIS V A G+ +I+TDHHL LP A A++NPN + Sbjct: 132 IAARGTKLLITVDTGISGAQVVADAPK-GLDIIITDHHLAPRQLPPALAVVNPNQPGDEY 190 Query: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLA--ELLDLVALGTVADVVPLDA 242 P K +AGVGVAF L AL ++R P+L EL++LVALGTVAD+VPL Sbjct: 191 PFKGIAGVGVAFKLCQAL----------EQRRTGQPDLYWDELIELVALGTVADMVPLQD 240 Query: 243 NNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSV 302 NR + +G++R+ PG++AL+ V + + +GF LGPR+NAAGRLDD Sbjct: 241 ENREIVRKGLARMPHSPL-PGLQALIHVTVAPGSAINSGTIGFGLGPRINAAGRLDDAMT 299 Query: 303 GVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYH 362 V LL + A+ LA EL++ NQ R+ + Q + EA E+ + L + Sbjct: 300 AVKLLTARDPETAKELAEELNSANQERQALSQKIFEEA----ERQLAKQGPPEWSLVLGE 355 Query: 363 PEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGM 422 WH GV+GI+ASR+ E++H P + + G+ T KGS RSI L + AL+R Sbjct: 356 EGWHPGVIGIVASRMTEKYHLPSVLLSIDGE-TAKGSCRSIPPLDLYQALDRCRD----H 410 Query: 423 MLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA-EMTMEV 481 +++FGGHA AAGL++ + F++ F +V E LD + V D + E+T E Sbjct: 411 LVQFGGHAQAAGLTIRTAEIPAFREAFARVVAEMLDHKPYEPAAVPDWFVPEDREITPEA 470 Query: 482 AQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA 540 L P+G P P+ ++ + L+G H + GG G+ + Sbjct: 471 VAQLAQMEPFGVGNPAPVLGFAKAQIQEVSLLGRDHNHLKFLLKQGGFRYKGLLWQEGPR 530 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +A+ +N FRG ++ + + + Sbjct: 531 FHSFYPGEVAAVAFSPRVNTFRGVTAVDLEVSAV 564 >UniRef50_B0VEZ1 Putative ssDNA exonuclease, 5'--> 3'-specific n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VEZ1_9BACT Length = 574 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 174/587 (29%), Positives = 293/587 (49%), Gaps = 30/587 (5%) Query: 1 MKQQIQLRRRE------VDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLP 50 M ++ + E +LP L+ L +G+++ + K + Sbjct: 2 MNKKWLIPSPPGKEINPEIEKLSAEFKLPRLVAELLYRKGIKTVNSAQEFFKPSMDNLYD 61 Query: 51 WQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNR 110 +EKAV+ + A +I + GD+D DG T+TAL L ++ +G +NID+ +P+R Sbjct: 62 PYLFPDMEKAVQRILRAIDSKEKITIYGDYDVDGTTATALLYLGLKRIG-ANIDFYIPHR 120 Query: 111 FEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA 170 DGYGLS +D G+ LI++VD G+++ + S+G+ +I+TDHH P D LP Sbjct: 121 MIDGYGLSLGSLDALRENGSSLIISVDCGVNAIEEINAINSMGMEIIITDHHNPKDELPP 180 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A AIINP L +P + LAGVGVA+ L++A+ L + N + +DLVA Sbjct: 181 AFAIINPKLPGTKYPYEHLAGVGVAYKLLMAIYNNLGID--------SAENKLKYMDLVA 232 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPR 290 +GT+AD+VPL + NRI G+ + K G+ AL++++ + + L +D+ F + PR Sbjct: 233 VGTIADIVPLTSENRIFASIGLQHLIE-KKNLGLNALVQISGLNQKNLDTTDIVFGIAPR 291 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NAAGR+ SV V LL+ + ++ LA ++ N R++ +Q EA + EK + Sbjct: 292 INAAGRMGSASVSVELLISTDEAKSMELAEIIEHQNSLRQQEDQKTFQEACDIIEK-KYK 350 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRD 410 + + +WH GV+GI+AS++ E+++RPVI + DG GSGRS+ + + Sbjct: 351 DLQQTSCMVVSSDDWHPGVIGIVASKLVEKYYRPVIMISF-KDGFGSGSGRSVADFDLFE 409 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 AL++ + FGGH A GL++ ++ F+ V+E L +Q + D Sbjct: 410 ALKQ----TEHNLHSFGGHKYAVGLTIYQEYLDRFENELTRFVSENLRLEQIQPPLQIDA 465 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRL--VGERHLKVMVEPVGGGP 528 + + + L P+G P+F + VG HLK+ V V G Sbjct: 466 EIELYNINNTLLDALEHFAPFGPDNTRPVFMTRNVTIASYPYNVGRNHLKLKV--VKDGI 523 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + I +N+ L ++ +AY L+ N F N ++Q + ++ Sbjct: 524 YFNLIGYNLGDYLPLLKKNGKLDIAYTLEYNRFGNNLTIQGKLKDLQ 570 >UniRef50_Q3A9Z7 Single-stranded DNA-specific exonuclease RecJ n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A9Z7_CARHZ Length = 854 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 191/584 (32%), Positives = 305/584 (52%), Gaps = 29/584 (4%) Query: 2 KQQIQLRRREV--DETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLP----WQQLS 55 K+ + ++ + + PL ++ +RG+ + + R G + L Sbjct: 3 KKNWLIFETSHLGEKYLEDFFRIEPLTAKMLVNRGIFHPRGVRRFFWGNIDDTYSPYLLK 62 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 +EKAV+++ + R + ++ GD+DADG TSTAL +R G N+D+ +PNR ++GY Sbjct: 63 DMEKAVKLILSG-RNTEKFLIYGDYDADGLTSTALLYDFLRKRGF-NVDWYIPNRLDEGY 120 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL + +A G I++VD GI++ V+ R +G V++TDHH P + +P AEA+I Sbjct: 121 GLHLPPLVKALEEGISFIISVDCGITAVDEVKTVREMGAKVVITDHHEPQEEIPVAEAVI 180 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP +DC +P K LAGVGVA L+LAL L ++ L + LDL +GT+A Sbjct: 181 NPKQKDCPYPFKGLAGVGVALKLVLALGMALGER--------EEDILDQYLDLFTVGTIA 232 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL NRI +G+ R+ A RPG+KAL EVA + +++ D+GF L PRLNAAG Sbjct: 233 DIVPLVDENRIFVIEGLKRL-AATGRPGLKALKEVAQLNREEITTRDVGFILSPRLNAAG 291 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RL D ++ LL+ +N A LA L NQ R+ IE + A+ E+ Sbjct: 292 RLKDPALAFELLIEENYERALALAYRLSEENQNRQGIEAEIFKAAVETIER--EVDLDRE 349 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 L + WH GV+GI+AS++ E+++RPVI + G+ KGSGRS+ G ++ +AL+ + Sbjct: 350 KILIIGGDGWHPGVIGIVASKLMEKYYRPVILISFDGE-EGKGSGRSVFGFNLFEALKAV 408 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + FGGH A G+ + + +F F++ + L LL ++ + + Sbjct: 409 KD----YLTHFGGHERAVGVGVLKSRFLEFKEALLAYAEKHLPDELLLPKIEVEEVVGEN 464 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGE--RHLKVMVEPVGGGPLLDG 532 ++ ++++ + P+G+ PEPLF ++ + VG+ HLK V+ + Sbjct: 465 DLNLKISDEIALFAPFGEQNPEPLFLIKGGQIRGAQAVGKNGNHLKFNVKL--NREIFSS 522 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 IAF+ L EV LA+ N F G LQ+ + I P Sbjct: 523 IAFSKGDYLEFVYQQNEVDLAFIPKPNRFNGKTELQLNVKEIAP 566 >UniRef50_Q26GN0 Single-stranded DNA-specific exonuclease n=7 Tax=Flavobacteria RepID=Q26GN0_9BACT Length = 565 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 171/586 (29%), Positives = 288/586 (49%), Gaps = 35/586 (5%) Query: 3 QQIQLRRREVDETADLPAE---LPPLLRRLYASRGV----RSAQELERSVKGMLPWQQLS 55 + L+ + T + A+ + L L RGV ++ + + + Sbjct: 1 MRWTLKPQPDIATQEKLAQELGIDSFLAGLLVQRGVDAFAKAKSFFRPDLNELHDPFLMK 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++ AV+ + A I+V GD+D DG TS AL + S + +P+R+ +GY Sbjct: 61 DMDVAVQRIQKAIGNNENILVYGDYDVDGTTSVALMSTFLLSF-YDRVATYIPDRYGEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G+S + +D A LI+ +D G+ + V +A GI I+ DHH PG LP A A++ Sbjct: 120 GVSYQGIDYAADNDFSLIIALDCGVKAIDKVAYAAEKGIDFIICDHHRPGKKLPNAIAVL 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P DC +P L G GV F L A + + + L LDLVA A Sbjct: 180 DPKRDDCTYPFDELCGCGVGFKLCQA---------FVEANDWEFEMLIPYLDLVATAIGA 230 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VP+ NRIL + G++ I R G KA++ +D L +D+ F + PR+NAAG Sbjct: 231 DIVPIVGENRILAYHGLNVINTSP-RAGFKAIIHQLKKD--TLTITDVVFIIAPRINAAG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ V L++ D+ EA+ +A E++ N R+E ++ + EA +++ + + Sbjct: 288 RMKHALHAVELMVTDDFKEAQRIAAEIEEYNADRREADRSITEEAK---QQIINNNEEER 344 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 ++ WH+GV+GI+ASR+ E ++RP + F +GD L S RS+ G + +ALE+ Sbjct: 345 FTTVVFQENWHKGVIGIVASRLIETYYRPTLVFTKSGD-YLAASARSVSGFDVYNALEQC 403 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + +FGGH AAGL+L+ + + LF+ RF E+V ++ L E+ D L Sbjct: 404 SD----YIEQFGGHKYAAGLTLKPENYSLFKDRFEEVVCATIEKQHLTPEIKIDAMLPLE 459 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ---RLVGE--RHLKVM-VEPVGGGPL 529 ++ + ++L+ P+G P+F +++ + VG+ HLKV V+ Sbjct: 460 NISPKFYRILQQMAPYGPGNMRPVFMTE-KVMDTGYGKCVGKSEDHLKVKVVKNKNDRNG 518 Query: 530 LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 +D I FN+ + +AY + NE+ GN SLQ+++ +I Sbjct: 519 MDAIGFNLGGKSDLVKNKVKFDIAYTISENEWNGNISLQLLLKDIK 564 >UniRef50_Q3MAJ6 Exonuclease RecJ n=6 Tax=Cyanobacteria RepID=Q3MAJ6_ANAVT Length = 730 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 183/625 (29%), Positives = 308/625 (49%), Gaps = 69/625 (11%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLSG 56 + QI L++ ++ + A L P++ +L +RG+ + ++ + ++ P + Sbjct: 20 RWQIHLQKTDLAQKLADAANLSPIVCQLLINRGIETPEQAQAFLEPESLNLPSPLTEFPD 79 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + +VE+L A ++I + GD+DADG TSTAL + ++RSLG + +DY +P+R +GYG Sbjct: 80 LAMSVELLQEAIASQSKIAICGDYDADGMTSTALLLRSLRSLG-AQVDYAIPSRMHEGYG 138 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 ++ +V++ H+ G +LI+TVDNGIS+ + A+ LG+ VI+TDHH LP A+AI+N Sbjct: 139 INKRIVEEFHSEGVKLILTVDNGISAFEPIARAKELGLNVIITDHHDIPQKLPPADAILN 198 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P L + P + +AGVGVA+ L ++L L + +L L LGT+AD Sbjct: 199 PKLIAESSPYRGVAGVGVAYILAVSLAQKLDKTKGL---------IQPMLALFTLGTIAD 249 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR----------------------- 273 + PL NR +G+ + + PG++AL++VA Sbjct: 250 LAPLSGVNRRWVKRGLKLLPKSQL-PGVQALIQVAGVQAINSKFKIPFGNAKGEQNSKLI 308 Query: 274 --------------------DAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIG 313 + Q L D+GF LGPR+NA GR+ D + LL D+ G Sbjct: 309 NNDSNKDLTYGVPNPQSPVPNPQSLKPEDIGFRLGPRINAVGRIGDPLTVIELLTTDDEG 368 Query: 314 EARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGIL 373 A A + + N +R+++ + ++ +A+ E L + L + P WH GV+GI+ Sbjct: 369 LALERAMQCEQANTSRQQMCEEIEQQAIAHVEDLYATSLQQDRVLVVIQPNWHHGVIGIV 428 Query: 374 ASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAA 433 ASR+ ER+ PV + ++GS RSI ++ +ALE L + K+GGH A Sbjct: 429 ASRLVERYGVPVFIGTYEDEELIRGSARSIPEFNVFEALEYCHDL----LGKYGGHKAAG 484 Query: 434 GLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQ 493 G S + + R E + L P L+ + D + ++ E+ Q L P G Sbjct: 485 GFSFPATNLQKLRSRLSEFANQCLQPQHLKPLLQIDVEANFNQIHQELYQQLNSLHPCGI 544 Query: 494 MFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGP--LLDGIAFNVDTALWPDNGVREV 550 P+P+F + ++++Q++VG+ H+KV + G IA+ + Sbjct: 545 DNPDPVFWTPNVQVVEQQIVGKGHIKVTLSQTIEGQPYQFKAIAWRWRDYY---PLPPRL 601 Query: 551 QLAYKLDINEFRGNRSLQIIIDNIW 575 +AYKL N F GN SL++ + + Sbjct: 602 DIAYKLRENNFNGNTSLELELLGVR 626 >UniRef50_C6VR18 Single-strand DNA-specific exonuclease RecJ n=6 Tax=Lactobacillus RepID=C6VR18_LACPJ Length = 778 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 175/569 (30%), Positives = 284/569 (49%), Gaps = 34/569 (5%) Query: 14 ETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSGVEKAVEILYNAFR 69 + A + PL+ RL RG+ +A+E + +L + +EKAV+ + A Sbjct: 22 DKLAEAASVTPLVARLLIMRGINTAEEAAPFLHADQQPLLDPTNMHDMEKAVDRIQEAII 81 Query: 70 EGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARG 129 G +I + GD+DADG TST++ + +G +N++Y +P+RF+DGYG + D+ A G Sbjct: 82 AGDQITIYGDYDADGLTSTSIMYETLDQIG-ANVNYYIPDRFKDGYGPNQAAFDRLIAAG 140 Query: 130 AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSL 189 +L VTVDNG++ +A + + GI V+VTDHH LP A AI++P + ++P L Sbjct: 141 TKLFVTVDNGVAGNAVINQVQEQGIDVVVTDHHELPTELPHAYAIVHPRHPEGSYPFGGL 200 Query: 190 AGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTW 249 +G GVAF + AL + ++ A+GTVAD+V L NR L Sbjct: 201 SGAGVAFKVATALLEEVPEELLDL---------------AAIGTVADLVSLTGENRTLVT 245 Query: 250 QGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLC 309 G+ ++ RPG+ AL++ A KL +++GF + PRLNA GRL GV LL Sbjct: 246 LGLKVLQQTT-RPGLAALIQEAGLIPDKLTETNIGFGIAPRLNALGRLQSAQSGVELLTT 304 Query: 310 DNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGV 369 + A LA +++ LN+ R+ + + + A+ + E L + WH+GV Sbjct: 305 LDDERATALAKQVNQLNEKRQGLVKTISASAIEQAQTPENE---ARQTLVITGHGWHEGV 361 Query: 370 VGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGH 429 +GI+AS + E +P + DG LKGSGRS++ ++ A++ + ++ FGGH Sbjct: 362 LGIVASHVVETTGKPTLVLNEDDDGRLKGSGRSVEAYNLFAAIDPVRE----SLVAFGGH 417 Query: 430 AMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAG 489 MA GL++ D+ ++ Q + DG L AE T+ ++ Sbjct: 418 HMAVGLTVMADQLATLKEAMEVAAVSQQLADNAQVSLPIDGTLPLAEATLATLADIQALA 477 Query: 490 PWGQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDN- 545 P+G P PLF+ + R +G ++HLK ++ G +D I F++ TAL Sbjct: 478 PFGTDNPAPLFELVPTTVPHARAIGSDQQHLK--LQLGDGTNTIDAIGFSMGTALPAIQA 535 Query: 546 GVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +V L +L N + G QI++ +I Sbjct: 536 SPTDVTLVGELSENTWNGQTKPQIMVKDI 564 >UniRef50_A7VWX6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWX6_9CLOT Length = 710 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 190/583 (32%), Positives = 307/583 (52%), Gaps = 30/583 (5%) Query: 1 MKQQIQLR-RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK---GMLPWQQLSG 56 MKQ + +E+ +T L L + RG S +++E + L Sbjct: 21 MKQWVTAPLDKEIAKTIAQTYGLSQFLSMMLVIRGFHSKEQIESFLNTPDSCFDPFLLKD 80 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++ AVE ++ A + +I + GD+DADG TST+L + SLG +++ Y +P R +GYG Sbjct: 81 MDLAVERIHQALDQFEKICIYGDYDADGVTSTSLLYSYLESLG-ADVMYYIPERESEGYG 139 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH-LPGDTLPAAEAII 175 ++ + V + G +LI+TVDNGI++ VE+A SL I +VTDHH GD LP A A++ Sbjct: 140 MNIDAVRKLSELGVRLIITVDNGIAAAREVEYANSLHIDTVVTDHHQQQGDILPPAVAVV 199 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P+ DC+ P K++AGVGV F L+ AL G F L DL A+GT+ Sbjct: 200 DPHRLDCDCPFKNMAGVGVTFQLISALE---GKDGGFSTL------LENYSDLAAIGTIG 250 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL+ +NR+L G++++ R GI+AL+ + + +KL ++ + F+L PR+NAAG Sbjct: 251 DIVPLEKDNRVLVKHGLAQLSRTD-RLGIQALITESGLEGKKLTSTAVAFSLVPRINAAG 309 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD-TL 354 RL V LLL + EA LA E+ NQ R++IE + AL + E L+ + Sbjct: 310 RLGSSRQAVKLLLSEYPDEAEDLAREIGEQNQQRQKIEGDI---ALQIEEYLQAHPERRF 366 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 L + WH GVVGI+ASR+ E++ +P + + G+ +GSGRS++G + DA+ Sbjct: 367 DRILVVDGENWHAGVVGIVASRVVEKYGKPCVVISREGE-LSRGSGRSVEGFSLSDAVYA 425 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 +++FGGH MAAG++++ DK F+ + P + +++ D L P Sbjct: 426 CRE----HLVRFGGHPMAAGITIKTDKIDDFRLAINAYAAQR-HPQMPYPKLLLDCKLRP 480 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGE-RHLKVMVEPVGGGPLLDG 532 +++++ + L P+G P PLF L G +HL++ + + Sbjct: 481 QVLSLDIVEELTLLEPFGTGNPAPLFGLYSMTLTGITPCGNRKHLRLAFQREK--VKITA 538 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + F+V +P + LA L+ NE+RG SL I I ++ Sbjct: 539 MRFSVTPEEFPYQPGDILDLAVTLERNEYRGEASLSIHIRDLK 581 >UniRef50_B8DHM3 Single-stranded-DNA-specific exonuclease RecJ n=24 Tax=Listeria RepID=B8DHM3_LISMH Length = 783 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 179/583 (30%), Positives = 283/583 (48%), Gaps = 36/583 (6%) Query: 2 KQQIQLRRREVDETADLPAE--LPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 K + D+ + L + + L +L R + + + ++ + Sbjct: 5 KYLWNIEEAAEDKASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESYDPFLFA 64 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++ AV + A +I+V GD+DADG TS A+ + +R LG +N ++ +PNRF +GY Sbjct: 65 EMDLAVARIKQAIELNEQILVYGDYDADGVTSIAVLMKTLRHLG-ANAEFYIPNRFTEGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G + D A +G LI+TVDNGI++ + HA+ +G+ VIVTDHH P + +P A A+I Sbjct: 124 GPNIAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREIMPEAVAVI 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P +P LAGVGVA+ L AL ELLDLVA+GTVA Sbjct: 184 HPKHPKSAYPFDELAGVGVAYKLSHALLG---------------EEPKELLDLVAVGTVA 228 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+V L NR+L G+ ++R G+ L + A+ ++ +GF L PRLNA G Sbjct: 229 DLVSLTDENRLLVQLGLRQLRES-ANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RL LLL ++ EA LA E+D N+ RK+I A+ E + TL Sbjct: 288 RLGPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEA----KVTLG 343 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG-DGTLKGSGRSIQGLHMRDALER 414 L +Y W+ G++GI+AS++ + RP I G KGSGRS+ H+ AL++ Sbjct: 344 NVLVVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQALDK 403 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 L M FGGH MAAGL+L + + + E + +L + + + ++ Sbjct: 404 HRDL----MTAFGGHPMAAGLTLPAENLIELEAKLQEEAS-FLSEEDFRPALKIEEKINI 458 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLD 531 A++++ L P+G P+P+F + L + +G + HLK M+ LD Sbjct: 459 ADVSVAFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLD 518 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 I F V + + V + +L INE+ + Q+ + +I Sbjct: 519 SIGFGVGDLVEKISPNAAVDVVGELSINEWNNVKKPQLRMMDI 561 >UniRef50_C0XKS9 Exonuclease RecJ n=3 Tax=Lactobacillus RepID=C0XKS9_LACHI Length = 776 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 166/589 (28%), Positives = 295/589 (50%), Gaps = 36/589 (6%) Query: 2 KQQIQLRR---REVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQL 54 K + Q+++ + + ++ PL+ + RGV + + + + K + Sbjct: 5 KFKWQIKQNTDPQQVQALSEALKIDPLIASILLQRGVSTEEAAQDFLTPSSKDFHDPYLM 64 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++K + + +A +I V GD+DADG TST + + LG +N+DY +PNRF DG Sbjct: 65 HDMKKGIARIQHAVENEEQITVYGDYDADGITSTTIMYEVLNDLG-ANVDYYIPNRFSDG 123 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + + + G LI+TVDNG++ + ++ A SL V+VTDHH + LP A AI Sbjct: 124 YGPNVDAFKKIINNGTTLIITVDNGVAGNEAIDVANSLHCDVLVTDHHSLPEVLPNAYAI 183 Query: 175 INP---NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 I+P N +P L+G GVA + AL L +L+D+ A+ Sbjct: 184 IHPRVKNQEGQAYPFGDLSGAGVALKVAQALMEDLP---------------IDLIDVAAI 228 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRL 291 GTVAD+V L NR + G++ IR + RPG+ AL++ A+ D K D+GF + PRL Sbjct: 229 GTVADIVSLKDENRAIVKFGLNAIRNTQ-RPGLLALIKAADIDLSKFDEQDIGFGIAPRL 287 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 N+ GR+DD ++GV LL + +A LA D N +RK + +A+ + E + Sbjct: 288 NSLGRIDDANIGVELLSTFDDQKATELAEFADHQNDSRKSLVDEFYQQAVQMVESSGDAE 347 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRD 410 + L + +WHQGV+GI+AS++ E++ RP I G+ +KGSGRS++ + Sbjct: 348 NR--STLVVVGDDWHQGVLGIVASKLVEKYGRPTIVLTSQHGNDQVKGSGRSVESFDLFS 405 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 A++ + + FGGH A GL++ +DK + + + + + + Sbjct: 406 AIDPIRDQT----IGFGGHHSAIGLTINKDKISVLKDQLEKAAGNQELDLSQKPTLDIAA 461 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPL 529 +S ++ + + L P+GQ P+P+F+ + +L+ + +G+ + V Sbjct: 462 KISADQIDNQFIKNLNVLAPFGQDNPKPVFEIEYDQLIDVKTMGKTGDHLRFSLVKNKSR 521 Query: 530 LDGIAFNVDTAL-WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 L +AF A NG ++++ +++ N + + ++Q+++ ++ I Sbjct: 522 LTAVAFGRGAAAGQLSNGSASIKVSGEINENTWNNHTTIQLMVSDLKQI 570 >UniRef50_B8FE66 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FE66_DESAA Length = 572 Score = 594 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 203/584 (34%), Positives = 305/584 (52%), Gaps = 23/584 (3%) Query: 1 MKQQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 M ++ +L ++ L L + +RG+R ER + + L Sbjct: 1 MNRRWKLCEPNLEAVEALSKYLGCHKAIAGAMVNRGIREPGAAERYLGPSLADLPSPFTL 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++KA+ + +A + I+V GD+DADG STAL + G + + + VP+R ++G Sbjct: 61 KDMDKAIARIIHAIQARENILVFGDYDADGVCSTALLTEFLLEAG-ARVFFHVPHRTQEG 119 Query: 115 YGLSPEVVDQ-AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 YG S + + ++ QL++TVDNGISSH +E A G+ VIVTDHH P +T P A A Sbjct: 120 YGFSSQHIRNPVLSKKIQLVITVDNGISSHEAIEEAGQAGVDVIVTDHHTPSETPPPALA 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 +I+P L C LAGVGVAFYL + LR +R+QG + E PNL DLVALGT Sbjct: 180 VIDPKLPGCPSGLDHLAGVGVAFYLCIGLRMAMREQGLWPEGK--EPNLKHKCDLVALGT 237 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +AD+VPL NRILT G+ + A RPG+KALL+V+ D ++A DL F PRLNA Sbjct: 238 IADMVPLIGENRILTRAGLEIMGAA-ARPGVKALLDVSAVDNSTVSAHDLAFRAAPRLNA 296 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 GR+D + V LLL + AR LA E+DALN+ R+ + + + AL+L + Sbjct: 297 PGRVDHANKAVELLLEKSNSRARQLAWEIDALNRKRQRMSEDLYHSALSLLKS--DHDLK 354 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 L M H WH GV+GI A+++ F+ PV+ + T KGS RSI G+ + AL+ Sbjct: 355 GKRSLVMAHSGWHPGVIGIAAAKLVREFNCPVVLISMDK-RTGKGSARSIPGVDLYQALQ 413 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 ++ ++ FGGHA AAGL++++ + F+ F V E + + D ++ Sbjct: 414 ACESQ----LIAFGGHAQAAGLTIDDKSIETFRGMFDSQVLEKSTERDFERVLTIDYSVN 469 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEP-VGGGPLLD 531 P E+ + A + P+G PEP+F + Q VG H +++ G L Sbjct: 470 PMEIGPDFANQIESMAPFGIANPEPVFISTEVGIKQGPTVGRGHRRMVFHSGEGNTKPLQ 529 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 I FN L P +AY++ N ++ +++Q II+ I Sbjct: 530 AIWFNARDQLVPSIAGA---VAYRVQWNRWKDRQTVQAIIEGIR 570 >UniRef50_A1AWT7 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Bacteria RepID=A1AWT7_RUTMC Length = 573 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 259/562 (46%), Positives = 371/562 (66%), Gaps = 14/562 (2%) Query: 19 PAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVG 78 ++P L+++YA+RG+ + L ++ +L L ++ A+ +L A RI++VG Sbjct: 15 SDDIPTFLKKIYAARGINESH-LSLNLIHLLKPNFLQ-LDVALVLLEQALLNQKRILIVG 72 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD-QAHARGAQLIVTVD 137 DFD DGAT++ ++V ++R +G +D+LVPNRFE GYGLS E+V + LI+TVD Sbjct: 73 DFDCDGATASVVAVKSLRMMGAKFVDFLVPNRFEHGYGLSEEIVKLAIQEKQPDLIITVD 132 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 NGISS GV+ A+S I VI+TDHHLP TLP A+ IINPNL+ C F SK+LAGVGV FY Sbjct: 133 NGISSFDGVKLAKSSNIQVIITDHHLPSKTLPQADIIINPNLKGCEFLSKNLAGVGVCFY 192 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 L A +T L +F I P+L +LDLVALGTVADVV LD NNRIL QG+ RI+ Sbjct: 193 LFSAFKTHLIKCNYFTNYKITPPDLRNMLDLVALGTVADVVKLDQNNRILVNQGVKRIQQ 252 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 KC PGI ALLE++NR + L ASDLGF++ PRLNAAGRL+D+S G+ LL ++I +AR Sbjct: 253 KKCAPGILALLEISNRPSATLRASDLGFSVAPRLNAAGRLNDISRGIKCLLTEDINDARR 312 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLE-----RSRDTLPGGLAMYHPEWHQGVVGI 372 A EL+A NQ RK+ + MQ +A + + E + + ++++ P WH+G++GI Sbjct: 313 YAQELEAFNQQRKQEQARMQDQAQAIVDAQELSITQENMSSDRFAISLFDPSWHEGIIGI 372 Query: 373 LASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMA 432 +A ++KE +H PV FA + D LKGS RSI +H++D L+ LD P ++LKFGGHAMA Sbjct: 373 VAGKLKEDYHCPVAIFAQS-DSDLKGSIRSIPSVHIKDLLDLLDRQNPDLILKFGGHAMA 431 Query: 433 AGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWG 492 AGLS++ + F F+Q F ++ LD + + E+++DG L +++++ AQLL DAGPWG Sbjct: 432 AGLSIKPENFTDFKQAFENVIQTHLDNRMPKVELLTDGELEAFDLSLDNAQLLVDAGPWG 491 Query: 493 QMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQL 552 Q F EP+F G F +++Q++VGE+HLK +++ G + D IAF P + + Sbjct: 492 QGFDEPIFYGEFEIIEQKIVGEKHLKFLLKLKGNTQVFDAIAF-----FQPPLLSMQALV 546 Query: 553 AYKLDINEFRGNRSLQIIIDNI 574 AYKL IN +RG+ SLQ++I+ I Sbjct: 547 AYKLSINSWRGSISLQLMIEQI 568 >UniRef50_A4SDH3 Single-stranded-DNA-specific exonuclease RecJ n=12 Tax=Chlorobiaceae RepID=A4SDH3_PROVI Length = 574 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 186/585 (31%), Positives = 292/585 (49%), Gaps = 32/585 (5%) Query: 1 MK-QQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELERS----VKGMLPWQQ 53 MK + L + + L R++ RGV+S E ++ + Sbjct: 1 MKRYRWNLPPVDDAALTSFACSIKASLPLARIFFMRGVKSYDAAEAFFTASLETLPSPSL 60 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 + + KAV + A R G +I++ GD+D DG T TA+ L +R +++ Y + NRFE+ Sbjct: 61 FASMPKAVGRVQEAIRSGEKIMIYGDYDVDGITGTAMLNLFLRDRD-ADVSYYINNRFEE 119 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYGLS E + A R LI+TVD GIS++ +E A LG+ VIV DHH P + LP A A Sbjct: 120 GYGLSMEGIRAAAERQVGLIITVDCGISANLAIERAGELGMDVIVCDHHEP-EELPDAYA 178 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 I+NP + C++P + L G GVAF + A+ L+ ++ + + LDLVA+ T Sbjct: 179 ILNPKVPGCSYPFRELCGCGVAFRFVQAIAEELQ---------LSAESWQQYLDLVAIAT 229 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 AD+V L NR + +G ++ + R GI+A+L + + L + + F + PR+NA Sbjct: 230 AADMVVLSEENRTMVREGFRMMQQ-RPRVGIEAMLSFMKVNPRDLGMTGVTFGIAPRINA 288 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGR+ V LL ++ EA EL+ LN R+ + M A + E + Sbjct: 289 AGRMGSARKAVDWLLAESKDEAHKHTGELEELNILRRRTDLEMLKRAEEMVEG---HFAS 345 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 + +Y WH GVVGI+AS++ ER+H P + + + +KGS RS+ GL++ L+ Sbjct: 346 YCSSIVLYDESWHLGVVGIVASKMLERYHLPTVILGASKE-LVKGSVRSVPGLNIYSVLQ 404 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 L + +FGGH AAG+S+ + F++RF E+ LD Q E+ D L Sbjct: 405 ECSDL----LEQFGGHHQAAGVSMRPENLPAFRKRFDEISARVLDMDARQKELTVDTELG 460 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHF--RLLQQRLVGERHLKVMVEPVGGGPLLD 531 E+T + L+ P+G PEPLF RL+ ERH+K MV G LD Sbjct: 461 LGEITGNFMKALQRFSPYGVGNPEPLFLTEGLQCTGSVRLLKERHVKFMVRDA-SGKRLD 519 Query: 532 GIAFNVDTAL--WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 IAF+ ++ + + Y L+++E+ G Q + ++ Sbjct: 520 VIAFDRKDIYDALMESSGQSFSMVYSLELHEWNGRVEPQAKVKDL 564 >UniRef50_Q038P0 Exonuclease RecJ n=8 Tax=Lactobacillus RepID=Q038P0_LACC3 Length = 764 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 185/583 (31%), Positives = 298/583 (51%), Gaps = 41/583 (7%) Query: 2 KQQIQLRRREV---DETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 + Q QL + + +PP L L RG+ + + V + L Sbjct: 3 QYQWQLAPQPAAADEHALSETLNVPPFLATLLLQRGINDQADYDAFVHPDTSRLHDPFAL 62 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++KAV + A + +I + GD+D DG TS+A+ + ++SLG ++ D +P+RF DG Sbjct: 63 HDMDKAVARILKAIEQNEKITIYGDYDVDGLTSSAIMLETLQSLG-ADPDVFIPDRFTDG 121 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + EV G QL++TVDNG++ A ++ A++ G+ V+VTDHH LP A A+ Sbjct: 122 YGPNAEVYAYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPAKLPHAVAV 181 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 ++P D ++P L+G GVAF + AL + P L E +DL ALGT+ Sbjct: 182 VHPRHPDGDYPFGDLSGAGVAFKVATAL--------------LGEPPL-ESVDLAALGTI 226 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+V L NR++ G+ I+ + R G+ A+L+ A + + + +GF +GPRLNA Sbjct: 227 ADLVSLTDENRVIAQLGLKMIQ-TQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNAL 285 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ D + GV LL A LA ++ LNQ R+ + + EALT+ + E Sbjct: 286 GRMGDANPGVTLLTTFEDDVAAELAEQVGKLNQERQGLVAKIAQEALTMAQAPENQ---A 342 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG-TLKGSGRSIQGLHMRDALE 413 L + WH+GVVGI+AS++ E +P + A DG T KGSGRSI+ H+ ALE Sbjct: 343 AKTLLLASKGWHEGVVGIVASKVVEATGKPTLIMNIADDGETAKGSGRSIEAYHLFKALE 402 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 M+ FGGH MA GL+ + + L ++ + + L Sbjct: 403 PAKE----HMVHFGGHHMAVGLTAKTTDLPAIHAQMEAAAATML-KTVPKPTLPITTRLE 457 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ-QRLVGE--RHLKVMVEPVGGGPLL 530 A++T++ QL+R P+GQ PEP+F +++Q + +G+ HL+ ++ + Sbjct: 458 DADLTLDHYQLIRQLAPFGQGNPEPVFSVRPQVIQNVKQIGKENNHLRFQIDQG-----I 512 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 + I F A + V+LA +LD N ++G+ SLQ+++ + Sbjct: 513 NVIGFGYGDAAETLATAQAVKLAVQLDQNTWQGHTSLQLMLKD 555 >UniRef50_C0QDK3 RecJ n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDK3_DESAH Length = 572 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 194/582 (33%), Positives = 304/582 (52%), Gaps = 24/582 (4%) Query: 1 MKQQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 M+ + + ++ A L L ++ L A+RGV++ + + + L Sbjct: 3 METEWKEKKSNSATVAGLEKALGCHRIVATLLANRGVKTPEAALAFLTPTMETLTSPFSL 62 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +++AVE + A RI++ GDFDADG T+TA+ + + I + +P+R ++G Sbjct: 63 KDMDRAVERIILAIENNERILIFGDFDADGITATAVLNDFLTHVN-GEISWYIPHRSKEG 121 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YGL E + A + LIVTVD G S V+ AR I VIVTDHH D P A AI Sbjct: 122 YGLKVEHIAMATEQQIDLIVTVDCGSDSFEAVDLARLEDIDVIVTDHHEVPDPAPRALAI 181 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NP + C+ LAGVGVAFYL++ALR +R +G + + PNL DLVALGT+ Sbjct: 182 VNPKQKCCHSGLDHLAGVGVAFYLVIALRMEMRKRGMW--QRFTEPNLLASCDLVALGTI 239 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+VPL A NR+LT G+ +R GK RPG+ AL +VA D + + D+ F + PR+NAA Sbjct: 240 ADMVPLTAENRVLTIAGIEVMRRGK-RPGLSALFDVARIDVALIDSDDIAFRIAPRINAA 298 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ + + LL + A A+ LD LN+ R++ EQ + + + ++ Sbjct: 299 GRMAHARICIDLLCSRDPRGAEQKADLLDQLNKKRQQTEQSIVADIERRISR--QNGAPC 356 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 L M+ WH GV+GI+AS+I ++ PV+ + A + GS RSI +++ AL + Sbjct: 357 KDALVMWDSSWHPGVLGIVASKISRKYVCPVVLISTA-NSPATGSCRSINNINIHSALGQ 415 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + +FGGHAMAAGL+++E F F + + + + D L Sbjct: 416 CSDF----LERFGGHAMAAGLTIQEKNMAAFSHHFENTIRSIVHGEPRKRILELDCALEI 471 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMV--EPVGGGPLLD 531 +T E+ + + P+G PEPLF ++ ++G RH K+ + + GP + Sbjct: 472 DTVTKELIEAIDSLRPFGMGNPEPLFYCKDIKVTHSTIIGMRHRKMELAKQTNASGPCIS 531 Query: 532 GIAFNVDTA-LWPDNGVREVQLAYKLDINEFRGNRSLQIIID 572 + FN+D PD+ + +A+++ +N F G S QIII+ Sbjct: 532 AVHFNIDDLDCLPDHFEQ---IAFRIRMNRFNGRFSPQIIIE 570 >UniRef50_Q8D2B5 RecJ protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D2B5_WIGBR Length = 580 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 249/559 (44%), Positives = 383/559 (68%), Gaps = 1/559 (0%) Query: 1 MKQQIQLRRREVDETADLP-AELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEK 59 M I++ R ++ ++ + +P +L+++Y++RG++ +E++ K ++ ++ L G++K Sbjct: 1 MNYDIKIHRISKIKSPEIENSNIPIILKKIYSNRGIKQLKEIDLKTKNLISYKNLLGIKK 60 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 A ++L A + +I++VGDFD DGA+ TAL+ L + LG +++++PNRF++GYGL+ Sbjct: 61 ATDVLKIALIKRKKIVIVGDFDVDGASGTALAFLILMKLGAKKVEFIIPNRFKNGYGLTK 120 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 E+V+ + ++IVTVDNGISSH GV AR G+ +I++DHH+P LP A AIINPNL Sbjct: 121 EIVEFIEKKEGEVIVTVDNGISSHEGVNLARKKGMKIIISDHHIPDKILPKAHAIINPNL 180 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 ++C F SKSL+GVGV FYLM++LR+ L+ WF + I IPNLAE LDLVALGT++D+ P Sbjct: 181 KNCKFKSKSLSGVGVIFYLMISLRSELKKNSWFKDNKIIIPNLAEFLDLVALGTISDLSP 240 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 LD NNRIL QGM+RIR G CR GIKAL+E++N D L+ +D+ + L P++N AGRL D Sbjct: 241 LDLNNRILVHQGMNRIRNGNCRAGIKALIEISNLDISFLSTNDISYILSPKINVAGRLKD 300 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 M +GV LLL ++I +AR+LA EL+ LN+ R+ I + M+ +A +C K+++ +T P G Sbjct: 301 MRIGVKLLLTNDIKKARLLAKELNFLNKKRQIIGKKMEKQAFFICTKIQKKTNTTPSGFV 360 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 +YH +WH+G++GI+ASRIKERF PVI FA + + LKGS RSI+G+++R L+ L+ +Y Sbjct: 361 LYHQDWHEGILGIIASRIKERFQVPVIIFAKSKNNLLKGSIRSIEGINIRLILKELNNMY 420 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 P +++ FGGH++AA L +E K F++ F + + + SDG L ++++ Sbjct: 421 PDLIISFGGHSVAAALVIESSKLIYFKKIFLNFIENKKINVSSKRIISSDGELFYDDISI 480 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT 539 + A LL + PWG F P+FDG FR+ Q L+ + HLK+ ++ + GG +LDGI FNVD Sbjct: 481 KTATLLLYSSPWGNKFNYPIFDGKFRIFDQLLINKIHLKIKIQHILGGNILDGICFNVDL 540 Query: 540 ALWPDNGVREVQLAYKLDI 558 WP+ + V+LAY L + Sbjct: 541 KSWPNKKINFVKLAYTLRV 559 >UniRef50_A5MZ56 RecJ n=30 Tax=Clostridium RepID=A5MZ56_CLOK5 Length = 595 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 169/610 (27%), Positives = 297/610 (48%), Gaps = 56/610 (9%) Query: 1 MKQQIQLRRREVD-ETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 MK++ L+R D + A + ++ + A+RG+ +E+ + + + Sbjct: 1 MKRRWMLKRCNKDVKYISKKAGISEIMATILANRGIVEEKEIRDFLNPSVDNLQDPLSMK 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 +EK +I+Y A + I + GD+D DG ST + + G + + Y +P+R E+GY Sbjct: 61 DMEKGTDIIYKAIMDNKNIAIYGDYDVDGVMSTYILYCGLLKCG-AKVKYHIPDRIEEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH-------LPGDT- 167 G++ + +++ G ++I+T DNGIS+ A V+ A+ LGI V++TDHH G+ Sbjct: 120 GINIKSIEKLKEEGCEVIITCDNGISALAQVKRAKELGIAVVITDHHHIFFEERENGEKT 179 Query: 168 --LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAEL 225 +P A+A+I+P DC++P K L G GVAF + L + + N + Sbjct: 180 YLIPEADAVIDPKQEDCSYPFKHLCGAGVAFKFIQVL---------YKKFNFKKEQCYKF 230 Query: 226 LDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGF 285 + A+GT+ D+V L NRI+ +G+ I + G+KAL+E + + + + +GF Sbjct: 231 IQYAAIGTICDIVDLIDENRIIVKKGLDMINNTE-NLGLKALIEETSLKGKNITSYHIGF 289 Query: 286 ALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCE 345 +GP +NA GRL + + LLLC + +A LA +L LN R+++ + + Sbjct: 290 IIGPCINATGRLKSAVLALELLLCKDAEKAGKLAKKLHELNIQRQDMTVKSLN---NIID 346 Query: 346 KLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQG 405 K+E S L +Y E H+ + GI+A R+K+R++ P I +G KGSGRSI+G Sbjct: 347 KVENSNLKRDKVLVVYEKETHESIAGIVAGRLKDRYNVPSIVIT-SGRIMSKGSGRSIEG 405 Query: 406 LHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGE 465 +M + L + L M KFGGH +AAGLS+ E+ ++ + L L + Sbjct: 406 YNMFEELVKCKEL----MEKFGGHPLAAGLSITEENINRLRENLNKNCN--LTEEDLIPK 459 Query: 466 VVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERH--LKVMVE 522 + D L ++ V + ++ P+G+ PLF + + + + +G+ LK+ Sbjct: 460 IRIDKKLPLENISFHVLEDIKKLEPFGKGNSTPLFGEKNIDVFKIYFMGKDKNVLKLFCR 519 Query: 523 PVGGGPLLDGIAFNVDTAL-------WPDNGVREV----------QLAYKLDINEFRGNR 565 +D IAF+ + +G ++ + INEF G + Sbjct: 520 LKNSLKKIDAIAFDGGEKFKKLILEVYGSSGANKIFNNNFTSLKMDFIFLPCINEFNGVK 579 Query: 566 SLQIIIDNIW 575 +LQ++I + Sbjct: 580 NLQLVIKDFR 589 >UniRef50_A8SGF1 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SGF1_9FIRM Length = 710 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 184/559 (32%), Positives = 284/559 (50%), Gaps = 31/559 (5%) Query: 25 LLRRLYASRGVRSAQELERSV---KGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 LL + A+RG+ E + + + L+ ++ A + ++ A G I V GD+D Sbjct: 59 LLAGILAARGITDPAEALTLLAGEEELSDPALLTDMDAACQRIWQAIDNGETIAVFGDYD 118 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 DG T+TAL ++ +G +++ ++P+R DGYGLS + H +G LIVTVDNGIS Sbjct: 119 VDGVTATALLYQHLKGMG-ASVKCMLPSREGDGYGLSKNAIQSMHNKGCTLIVTVDNGIS 177 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLA 201 + + A SLG+ +I+TDHHLP +TLP A A+++P D + P K L G GVAF L A Sbjct: 178 AVEEADFAASLGMDLIITDHHLPPETLPKAVAVVDPRREDDHSPFKGLCGAGVAFKLCAA 237 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 261 L + L DL A+GTVADV+PL NR L G+ +++ R Sbjct: 238 L-----------DGCPPEEMLDYCGDLAAVGTVADVMPLVGENRTLVKAGLRQLQQTD-R 285 Query: 262 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 321 PG ALLE + + A ++ +A+ PR+NAAGR+D+ + L+LC++ A LA++ Sbjct: 286 PGFGALLEEVGLAGKPITAENISYAIAPRINAAGRMDNAVTALQLVLCEDPDRAEELAHK 345 Query: 322 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 381 L+ +N R+E EQ + A L E+ D + ++ +WH GV+GI+ASR+ ER Sbjct: 346 LNEINAHRQETEQQIFKAAEELLEQQPERLD--DRIMLLWGRDWHPGVIGIVASRLVERT 403 Query: 382 HRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDK 441 RPVI G KGSGRS+QG ++ + L ++++GGHAMAAGLS+ E+ Sbjct: 404 GRPVIVVTIDEHGEGKGSGRSVQGFNLHACIGSCADL----LVRYGGHAMAAGLSVREEN 459 Query: 442 FKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD 501 ++R E P L + D + +T+E + L P+G P P+F Sbjct: 460 LPELRRRLNEWAAREC-PVLHTPPLTCDVTIHLDRITVESVRHLDQLAPYGAENPTPVFL 518 Query: 502 GHFRLLQ-QRLVGE-RHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDIN 559 ++ V E RH ++ + G L + F + P V A L + Sbjct: 519 LQSAVVDGVYPVSEGRHSRLRLRQ--GNSCLYAVWFGMPAEQLPYALGDVVDAALNLSV- 575 Query: 560 EFRGNRSLQI--IIDNIWP 576 + R Q+ I ++ P Sbjct: 576 -YESARGAQLSGRIIDLHP 593 >UniRef50_A6BZD1 Single-strand DNA-specific exonuclease n=2 Tax=Planctomyces RepID=A6BZD1_9PLAN Length = 587 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 192/590 (32%), Positives = 295/590 (50%), Gaps = 30/590 (5%) Query: 1 MKQQIQLRRREVDETADLPAE--LPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 M Q + + + L +E + PLL ++ +RG++ A + +L + Sbjct: 1 MTQNWRFAPHDESQVRRLSSEMRISPLLAQVLIARGLQDAAAARSFIDARMTELLEPGSM 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 GVE A + + A ++ RI + GD+D DG T+T++ + + +L DY +PNR +DG Sbjct: 61 PGVETASDRIVAALKDKRRITIYGDYDVDGMTATSILLQCI-TLANGKCDYFIPNRLDDG 119 Query: 115 YGLSPEVVDQAHARGA-QLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 YGL+ + + Q H +L++TVD GI+S AR LG+ +I+TDHH D LPAA+ Sbjct: 120 YGLNCDAIRQLHEEDPQRLLITVDCGITSVQEAALARELGLELIITDHHQMADELPAADC 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL----DLV 229 +++P L D ++ L G GVA L A+ L D A P + E L L Sbjct: 180 LVHPRLPDSDYEFPHLCGAGVALKLAWAVCQKLGD------GQKASPQMREYLKCAVGLA 233 Query: 230 ALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRD-AQKLAASDLGFALG 288 A+GT+ADVVPL NRIL G+S + A + G++ L++VA Q L D+GFA+ Sbjct: 234 AIGTIADVVPLVGENRILVRYGLSAL-AERAPLGLQELMKVAEIKAGQMLDTEDIGFAIA 292 Query: 289 PRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLE 348 PRLNAAGRL + V LL N A LA LD LN+ R+ +E+ + +A + E+ Sbjct: 293 PRLNAAGRLGQARLAVELLTTSNQDRASQLAAYLDELNKNRRTVERRIFKQAKEMVEENA 352 Query: 349 RSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLH 407 + L + H +WH GV+GI+A+R+ E F +P + A A T +GS RS G Sbjct: 353 EWEE--HHTLVLAHADWHPGVIGIVANRVSEHFEKPTVLIALDATTRTGQGSARSFAGFD 410 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 + ++++GGH AAGL +EEDK + F+Q F E + PS + V Sbjct: 411 LHAGFSSCSA----HLVRYGGHQAAAGLKIEEDKIENFRQAFAEYAADAPKPSEDELLVR 466 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQ-QRLVGERHLKVMVEPVG 525 D + E+T + + L GP+GQ P P F +L + R +GE + + Sbjct: 467 IDAEVCLNEITKQAVRELDCLGPFGQENPRPQFVATRVQLAEPPRTMGEGGRHLSLVFQQ 526 Query: 526 GGPLLDGIAFNVDT-ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + IAF A D +++ IN FRG S+Q+ + + Sbjct: 527 HNTKIRAIAFGKGEWATQMDEDGGPFSISFAPGINRFRGFESVQLQLKDW 576 >UniRef50_C0X5S7 Single-stranded-DNA-specific exonuclease RecJ n=38 Tax=Enterococcus RepID=C0X5S7_ENTFA Length = 770 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 186/582 (31%), Positives = 282/582 (48%), Gaps = 39/582 (6%) Query: 2 KQQIQLRRR---EVDETADLPAE-LPPLLRRLYASRGVRSAQELERSVKG----MLPWQQ 53 Q QL+ + V+ L E + PL+ +L R +R+ + L + + + Sbjct: 5 NYQWQLQTKTELPVEFIEQLKKEEINPLIGQLLWHRNIRTEEALRKFLHPTIEDIYDPFL 64 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 + +EKAV + A G +I+V GD+DADG TST + A+ +G + Y +PNRF Sbjct: 65 MHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVGGM-VQYFLPNRFVH 123 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG + +V + +G QLIVTVDNG++ H + +A + G+ VIVTDHH + LP A A Sbjct: 124 GYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAYA 183 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 I++P ++P LAGVGVAF + AL L ELLDLVA+GT Sbjct: 184 IVHPRHPQGDYPFGDLAGVGVAFKVATALLGELP---------------IELLDLVAIGT 228 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +AD+V L NR G+ I+ G R G+ LL+ A + ++ +GF +GPRLNA Sbjct: 229 IADLVSLTDENRTFVKMGLQMIQTGD-RIGLDVLLQEAGVKKEAVSEESIGFTIGPRLNA 287 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 GRL + + GV L+ + +A +A +D N RK+I + EAL L D Sbjct: 288 LGRLGEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI-------DP 340 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG-TLKGSGRSIQGLHMRDAL 412 + WH+GV+GI+A RI + +P I A G T KGSGRSI L++ +AL Sbjct: 341 NAPVHILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEAL 400 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 + + FGGH MAAG++L + Q+ + + E++ L Sbjct: 401 NEVREQF----THFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISESL 456 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLD 531 + ++ T LR P+G P F Q R +G + + + G LD Sbjct: 457 AVSQATTTFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQMNQEGAQLD 516 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 IAF + +A +L INE+ G + Q+++ + Sbjct: 517 AIAFQMGPQADELAQG-TADVAGQLSINEWNGRKKPQLMVTD 557 >UniRef50_A7H9Y9 Single-stranded-DNA-specific exonuclease RecJ n=7 Tax=Deltaproteobacteria RepID=A7H9Y9_ANADF Length = 599 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 221/561 (39%), Positives = 299/561 (53%), Gaps = 25/561 (4%) Query: 23 PPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVEKAVEILYNAFREGTRIIVVG 78 P+ R+ A RG+ + E + + + G++ AV L A G RI G Sbjct: 48 HPVAARVLAGRGLADPADAEAFLASRLSELPDPFTMKGMDAAVSRLVQAVEAGERIACYG 107 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DG TSTAL +R+ G + Y P+R +GYGL+ E V + A+GA+L+VT+D Sbjct: 108 DYDVDGVTSTALLCGFLRAAGADVVTYT-PHRLVEGYGLNTEAVRKLAAQGARLLVTLDC 166 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 GI+S V A +LG+ +V DHH LPAA AI+NP+ C +PSK LA VGV F L Sbjct: 167 GITSVEEVRAAAALGLDTVVVDHHTVPVELPAARAILNPHQPGCAYPSKGLAAVGVTFAL 226 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 +ALR LR++G A PNL + LDLVALGT+ADVVPL NRIL G+ I Sbjct: 227 AMALRRTLRERGR-FGGGRAEPNLKDALDLVALGTIADVVPLVGANRILVRWGLEAIAKS 285 Query: 259 KCRPGIKALLEVANR-DAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 + RPG+ AL VA + ++ A +GF L PR+NAAGRLDD GV LLL D+ AR Sbjct: 286 R-RPGLCALKRVAGIAEGGEVTAGQVGFRLAPRINAAGRLDDAGRGVRLLLSDDEATARA 344 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 LA ELD N R+EIE+ + EA + GL + WH GVVGI+ASRI Sbjct: 345 LAEELDRENAARQEIERRILDEATEDARARVGAG---VRGLVLARDGWHAGVVGIVASRI 401 Query: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 ERFHRP + A +G+ KGSGRSI+ H+ DAL G + +FGGH AAG+++ Sbjct: 402 VERFHRPAVLVA-LEEGSGKGSGRSIEAFHLYDALAACS----GHLARFGGHRHAAGVTV 456 Query: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 E F+ F L L DG L ++T +A+ L GP+G PE Sbjct: 457 ERGSLAAFRAAFEAHAAAQLAEEDLVPRCRIDGWLEERDVTERIAEDLAKLGPFGAGHPE 516 Query: 498 PLFDGHFRLLQQRLV--GERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYK 555 P+F + R V G HLK+ + G +D I F + L G V+ A+ Sbjct: 517 PVFALRGAATRARTVGAGNAHLKLAL-----GRGIDAIGFGMGDRLAACAG--PVEAAFT 569 Query: 556 LDINEFRGNRSLQIIIDNIWP 576 L + + G R LQ+ + ++ P Sbjct: 570 LGFDAWDGARRLQLKLRDVRP 590 >UniRef50_C6XU81 Single-stranded-DNA-specific exonuclease RecJ n=7 Tax=Bacteroidetes RepID=C6XU81_PEDHD Length = 567 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 175/583 (30%), Positives = 299/583 (51%), Gaps = 29/583 (4%) Query: 2 KQQIQLRRREVDETADLPAE--LPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 K+ +Q + + TA L + + L ++ RG+ S +E + + + + Sbjct: 3 KRWVQALQGNKETTALLAQQLNIDSSLAQILVQRGISSFEEARQYFRPDMGRLHDPFLMK 62 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++KA+E + A +I+V GD+D DG TS AL+ I Y +P+R ++GY Sbjct: 63 DMDKAIERIDKAINSREKILVYGDYDVDGTTSVALAFSFFSQF-TDQIGYYIPDRHKEGY 121 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G+S +D A+A G LI+ +D GI S + +A SL I I+ DHHLPG+ LPAA AI+ Sbjct: 122 GISTAGIDYANANGISLIIALDCGIKSTDKIAYANSLNIDFIICDHHLPGEVLPAAVAIL 181 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P +DC +P K LAG G+ F L A + + LDLV + A Sbjct: 182 DPKRKDCPYPFKELAGCGIGFKLAQAYCL---------QHRLPQEQYERYLDLVMVSIAA 232 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VP++ NRIL + G+ ++ + C G+KAL++++ ++ + +D+ F L PR+NAAG Sbjct: 233 DIVPIEDENRILAYHGLIKLNSNPC-IGLKALMDISGKN-KDYTLTDVVFTLAPRINAAG 290 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+D + V +LLC A+ + ++ N RK +Q M EAL L + E Sbjct: 291 RMDHANQAVKMLLCTEDNLAQEQSLLINLQNTERKTSDQNMTAEALALIAECEI--LINK 348 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 +YH W++GV+GI+ASR+ E+++RP + + +G L GS RS+ G + +AL Sbjct: 349 KTTVVYHENWNKGVIGIVASRLTEKYYRPTVVLTKS-NGLLTGSARSVAGFDLYEALLGC 407 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + L +++FGGH AAGL+++ + F +RF +V + LL E+ D + Sbjct: 408 EDL----LVQFGGHKFAAGLTIKAEDIGFFTERFENIVAATITEDLLCPEISIDNEIRLR 463 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH--FRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 ++ + +++ P+G P+F H F + +VG +HLK+ ++ + + I Sbjct: 464 QIDGKFQRIIAQMAPFGPHNMAPVFVSHEVFLASKPYVVGTKHLKLAIKQ-QNSSIFECI 522 Query: 534 AFNVDTALWP-DNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 AF + + + Y ++ N ++ + LQ+ I I Sbjct: 523 AFGMAEEYEQLLQPNQPFSVCYTIEENIWKAQKRLQLNIKEIK 565 >UniRef50_C5EEP4 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EEP4_9FIRM Length = 590 Score = 590 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 182/609 (29%), Positives = 304/609 (49%), Gaps = 58/609 (9%) Query: 4 QIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEK 59 + ++ + ++ A+ + P+ R+ +RG+ ++ L SVK + + L +EK Sbjct: 1 MLHAKKADFNKIAE-TYGISPVTARIIRNRGIEGMEDIGHYLHGSVKDLHDPRLLPDMEK 59 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 AV IL +EG I +VGD+D DG ST L A++ +G +N+D+ +P+R +DGYG++ Sbjct: 60 AVGILRGKVQEGKPIRIVGDYDIDGVCSTYLLYRALKRIG-ANVDFEIPDRIKDGYGINE 118 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP--------------- 164 +++ A G I+T DNGI++ + + A+ LG+ V+VTDHH Sbjct: 119 MIIEAAAEDGIDTILTCDNGIAAVSQIARAKELGMTVVVTDHHDILVEESGNSGAGDDAG 178 Query: 165 ---------------GDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQ 209 + LP A+AI+NP +R C +P + G VA+ L+ L Sbjct: 179 GQDGNDADAEDSCQGTEVLPPADAIVNPKMRGCRYPFPGICGGMVAYKLVQVL------- 231 Query: 210 GWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLE 269 F+E + ++L++ A+ TV DV+ L NRI+ +G+ R+ G++ L+E Sbjct: 232 --FEECGVPAEEWLDMLEIAAIATVGDVMKLQGENRIIVKEGLCRLGHT-SNLGLRKLIE 288 Query: 270 VANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTR 329 N + + A +GF +GP LNA+GRL + + LLLC++ EA +A EL LN R Sbjct: 289 KNNLASDSITAYHIGFVIGPCLNASGRLQTAKLALGLLLCEDEMEADRMAQELKELNDQR 348 Query: 330 KEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFA 389 K++ Q +A + ++L + L ++ P+ H+ + GI+A R++ER+ +P Sbjct: 349 KDMTQAGIDDAAAMVDELYQDD----KVLVVFLPDCHESLAGIVAGRLRERYGKPSFVLT 404 Query: 390 PAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRF 449 A +G KGSGRSI+ HM AL + L +LKFGGH MAAG SL E+ F++R Sbjct: 405 RA-EGCAKGSGRSIEAYHMFHALVEVKDL----LLKFGGHPMAAGFSLREEDVDEFRRRL 459 Query: 450 GELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ 509 E E L V D + ++ + L P+GQ +P F +++ Sbjct: 460 NENARERLTEDDFIPRVWIDVAMPFEYISESFVKELELLEPYGQGNEKPQFAQKNMVIRS 519 Query: 510 RLVGERHLKVMVEPVGG--GPLLDGIAFNVDTALWPDNGVREV-QLAYKLDINEFRGNRS 566 V R+ V+ + G ++G+ F + G V + Y +NE+ GNR+ Sbjct: 520 ASVMGRNRNVVRLSLVNERGVSMNGVVFTEGDLFMEEKGNSRVMDIIYYPGVNEYNGNRN 579 Query: 567 LQIIIDNIW 575 LQI++ + Sbjct: 580 LQIVVKDWK 588 >UniRef50_B7K3K2 Single-stranded-DNA-specific exonuclease RecJ n=8 Tax=Cyanobacteria RepID=B7K3K2_CYAP8 Length = 655 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 181/585 (30%), Positives = 303/585 (51%), Gaps = 30/585 (5%) Query: 2 KQQIQLRRREVDETADL--PAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQL 54 +Q+ ++ ++ L L PL+ ++ +RG+ + + + + P ++ Sbjct: 6 RQRWEIATPNPEQVKQLIEATGLSPLIAKVIINRGIDTVKSTQVYLDPEVENLPSPLKEF 65 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 + ++ +L A G +I + GD+DADG TSTAL + A LG ++I Y +P+R +DG Sbjct: 66 PDLATSITLLQEAITTGEKIAICGDYDADGMTSTALLLRAFSQLG-ADIYYEIPSRMKDG 124 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG++ +V+ +G +I+TVDNGIS++ ++ A LG+ VI+TDHH + LP A+AI Sbjct: 125 YGINERIVEAFADQGVGVILTVDNGISAYQPIQRAIELGLTVIITDHHDLPEKLPPADAI 184 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NP L N P + LAGVGVA+ L + L F + LL+L LGT+ Sbjct: 185 LNPKLLPENSPYRGLAGVGVAYILAVTTAQSLGITQGF---------IDPLLELFTLGTI 235 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR--DAQKLAASDLGFALGPRLN 292 AD+ PL NR +G+ R+ + G++AL++VA + ++L D+GF LGPR+N Sbjct: 236 ADLAPLIGVNRRWLKRGLRRLPKSQL-AGVQALMQVAGVSEEQKQLKPDDIGFRLGPRIN 294 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 A GR+ D + + LL D+ G A A + + +N RK + + +++EA+ L E Sbjct: 295 AIGRIGDPQMIIELLTTDDPGIALERAMQCEQINAKRKAMCEQIELEAVHLVENTPIPWK 354 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDA 411 L + WH GV+GI+ASR+ ER+ PV + ++GS R I+ ++ +A Sbjct: 355 K-DRVLVVVQSNWHHGVIGIVASRLVERYGVPVFIGTYEENPSKIRGSARGIKEFNIFEA 413 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L+ L + K+GGH A G SL F+QR ++L+P L+ V D Sbjct: 414 LDFCGDL----LGKYGGHKAAGGFSLLAKNLDHFKQRLSTFAHQYLEPHHLKPLVSIDAE 469 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLL 530 + ++T + Q + PWG P+F + ++L+QR+VG+ HLK++ + Sbjct: 470 ANFDQLTPLLHQSIDQLQPWGIGNEFPVFWTPNVQVLEQRIVGKNHLKLVFCQDNNENQM 529 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 +A+ + V +AYKL N + G +++I I I Sbjct: 530 KAVAWRWGEYF---PLPKRVDIAYKLKENNWNGETNIEIEIIGIR 571 >UniRef50_B2GBD3 Single-strand DNA-specific exonuclease n=21 Tax=cellular organisms RepID=B2GBD3_LACF3 Length = 765 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 195/584 (33%), Positives = 296/584 (50%), Gaps = 42/584 (7%) Query: 2 KQQIQLR---RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 K Q + +E + LP L L ++G++SA +R + + L Sbjct: 5 KYAWQGQANGDKETIQVVADATGLPAELAALLVNQGIKSADAAQRWLNPQAEDLHTPDAL 64 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 V++AVE + A G +I V GD+DADG T+T L A+ +LG + +DY VP+RF DG Sbjct: 65 HDVDRAVERIMAAVEAGEKITVYGDYDADGITATTLMYEALETLG-AQVDYYVPDRFTDG 123 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + V + G QLIVTVDNG++ A +E+A+ G+ V++TDHH + LP A AI Sbjct: 124 YGPNQAVYQRLIEGGTQLIVTVDNGVAGLAAIEYAKEQGVDVVITDHHALPEQLPPAVAI 183 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 ++P +P L+GVGVAF + AL E+LDLVA+G + Sbjct: 184 VHPQYPGSEYPFADLSGVGVAFEVAWALLGEFP---------------VEMLDLVAIGEL 228 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+V L N L G+ ++R G RPG+ ALL++A L +D+GF L PRLNA Sbjct: 229 ADLVSLAGENHALVALGLQQLRQG-SRPGLHALLKLAGVKEATLTGTDVGFQLAPRLNAL 287 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR++ GV LL + EA LA E+D N+ RK++ + + EAL + + Sbjct: 288 GRIEQAGPGVVLLSTFDEEEAERLAKEVDQTNEERKQLVEQITKEALAMAANQQ------ 341 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRDALE 413 L + WHQGV+GI+A+ + + +P I + G+ KGSGRS+ GL + AL+ Sbjct: 342 VPALVLVGHGWHQGVLGIVAAHVVQATGKPTIVASANEGETIAKGSGRSVDGLDLFAALD 401 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + L M FGGHAMA G+S E Q E VT + + L+ Sbjct: 402 QHRDL----MTAFGGHAMACGMSFELTAAAPLQAALNEEVTAQGFNQQQKPPLKITLTLA 457 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFR-LLQQRLVGER--HLKVMVEPVGGGPLL 530 P +T ++ ++ P+G EP + + + +++G+ HLK+ V G P L Sbjct: 458 PDRLTQDLYTQIQRLAPFGPGNEEPQIELDVKGPVATQVMGKDKSHLKLKV----GQPPL 513 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 D +AF + EV+L L +NE+RG S Q+++ ++ Sbjct: 514 DVVAFGKASLAPALAEAEEVKLVGTLSLNEWRGKTSCQLMLTDV 557 >UniRef50_Q03F38 Exonuclease RecJ n=3 Tax=Lactobacillales RepID=Q03F38_PEDPA Length = 773 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 176/584 (30%), Positives = 294/584 (50%), Gaps = 38/584 (6%) Query: 4 QIQLRRREVDETADLPAE--LPPLLRRLYASRGVRSAQELERSVKGM----LPWQQLSGV 57 Q+ + + + L +E L + ++ +RG ++ +++ + L + Sbjct: 7 NWQVSKLDDVDIDQLASETKLSQTMVKIMVARGFKTGEDILSFIDEDMSIVHDPMLLHDM 66 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 +KA++ ++ A +I+V GD+DADG TST + + LG +N+ Y VP+RF+DGYG Sbjct: 67 QKALDRIFVAIESNEKILVYGDYDADGVTSTTIMYETLDQLG-ANVQYFVPDRFKDGYGP 125 Query: 118 SPEVVDQAH-ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + + G QLI+TVDNG++ + ++ A G VIVTDHH + LP A AII+ Sbjct: 126 NLKKYQHFINDEGVQLIITVDNGVAGNEAIKFAEDQGTNVIVTDHHEIPEVLPEAYAIIH 185 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P + +P L+GVGVAF + AL + + E LDL A+GT AD Sbjct: 186 PRHPEGAYPFGDLSGVGVAFKVATALLEEIPE---------------EFLDLYAIGTTAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V + NR L G+ I + R G++ L+E++ D D+GF + PR+NA GR Sbjct: 231 LVSMTDENRFLVKMGLEMIPNTQ-RIGLQKLIEISGVDVSHFDEQDIGFTVAPRINAVGR 289 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L++ S V LL + EA +A E++ +N R+ + + EA + Sbjct: 290 LENASRAVELLTTFDEEEATTIAQEINKINSKRQGLVSDIYTEAEEIA---LDDEHASRQ 346 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERL 415 L + +WHQGV+GI+ASRI ER ++P I + G+G KGSGRS+ L++ +A+ + Sbjct: 347 TLVIAGHDWHQGVLGIVASRIVERTNKPTIVLSDQGGNGIYKGSGRSVAALNLFEAINPI 406 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 G FGGH MA G+++E D+ + + Q ++ D ++ Sbjct: 407 REKCVG----FGGHHMAIGVTVEADQLATLTDQLEKAAQLVNLDFKQQPQLQIDLKVNIE 462 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGER--HLKVMVEPVGGGPLLDG 532 E+T ++ ++ GP+G P P F+ R+ + + +G+ HLK ++ G ++ Sbjct: 463 ELTEKLVSEMKILGPFGMNNPVPKFELEDVRVKEAKAIGKDGAHLKFTLD--DGNQNINA 520 Query: 533 IAFNVDTALW-PDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 IAF +N + L ++ NE+RGN S+Q + D+I Sbjct: 521 IAFKRGELADVLNNVANPISLVGTINTNEWRGNVSVQFMTDDIK 564 >UniRef50_B1YJG2 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Exiguobacterium RepID=B1YJG2_EXIS2 Length = 769 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 184/583 (31%), Positives = 288/583 (49%), Gaps = 39/583 (6%) Query: 2 KQQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELERSVK----GMLPWQQLS 55 K+ + + + +L ++ + L RG +A + + ++ Sbjct: 5 KKTWIDKDVDSLKIDELADQVNVSRQVAHLLVQRGFDTADQAKAFLETDQTAFHDPFLFQ 64 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 + K + + A EG I++ GD+D DG +S A+ A+ +G + + +PNRF +GY Sbjct: 65 DMTKVITRIQQAADEGEMILIYGDYDVDGVSSAAILWHALIEVG-AMAECYIPNRFTEGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G + A G L++TVD GIS + LG+ +I+TDHH D LP A A+I Sbjct: 124 GPNEAAFRWAAEEGFGLVITVDCGISGIEEAAVLKELGVDLIITDHHEAKDVLPDAFAMI 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P + D N+P LAG GVAF + AL + + ELLDL LGT+A Sbjct: 184 HPGV-DSNYPYSKLAGAGVAFKVAHALLGRVPE---------------ELLDLAVLGTIA 227 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL NR+L +G+ + A + RPGI AL +V + +L +GFA GPR+NAAG Sbjct: 228 DLVPLIGENRLLAAKGIEALNASE-RPGILALRKVCSLVEDELTEESVGFAFGPRINAAG 286 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RLD + +LL + + EA LA +LD N+ R++I + + EA L E+ S Sbjct: 287 RLDSAMPALEMLLAETMEEAEPLAEQLDQQNKQRQDIVKKIAEEATALVEQHYLSD---- 342 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALER 414 L + +W+ GVVGI+ASR+ E++HRPVI + GT KGSGRSI + L + Sbjct: 343 RVLVVDSDQWNPGVVGIVASRLVEKYHRPVILLCHDAEKGTAKGSGRSIAAFDLFAELNQ 402 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + P FGGH AAG++L + + ++R L D L Sbjct: 403 TADILP----HFGGHPAAAGMTLSSENVPVLRERLNAQAAS-LPDEAFIATTEIDLRLRV 457 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGER--HLKVMVEPVGGGPLLD 531 +++++ + + + P+G P P + + + +G HLKV+V G LD Sbjct: 458 SDVSIGLIEEMGRLSPFGMGNPSPRVVVEGANIRDLKRIGRDLTHLKVLV--TDGKTELD 515 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 GI F A+ + + EV L L+INE+ G R Q++I ++ Sbjct: 516 GIGFGFGDAVDEVSSLAEVSLMGSLNINEWNGFRKPQLMIQDL 558 >UniRef50_D0KXT7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXT7_HALNC Length = 597 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 253/590 (42%), Positives = 356/590 (60%), Gaps = 24/590 (4%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAV 61 +Q ++RR+ + + + + L + +RG+ +++ ++ +LP + G++ A Sbjct: 6 NEQRLIQRRQQPQIPEAMSSIDSRLAAILVNRGIVHPRQINPDLEFLLPPADMPGIDVAA 65 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 +IL +A RE RI+++GDFDADGAT+TAL V A+R++G ++Y +P+R GYGLSP + Sbjct: 66 DILADAVRENARILIIGDFDADGATATALCVRALRAMGAKQVEYTLPDRQRHGYGLSPAL 125 Query: 122 VDQAHARG---AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 + A +I+TVDNGI++ AGV A +L VI+TDHHLPGDTLP A AI+NPN Sbjct: 126 LKDWIAEADAPPDIILTVDNGIAAFAGVAAALTLNATVIITDHHLPGDTLPPAHAIVNPN 185 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 L +F SK++AGVGVAFY+M ALR L Q WF IA PNLA LDLVA+GTVADVV Sbjct: 186 LNGSDFASKAIAGVGVAFYVMAALRERLSAQDWF-AGGIARPNLARWLDLVAVGTVADVV 244 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 LD NNR L QG++RI+A +C PGI AL VA +D + +++DLGF +GPRLNAAGRL+ Sbjct: 245 SLDDNNRRLVAQGLARIQAQQCVPGISALFAVAGKDPRYASSTDLGFVVGPRLNAAGRLE 304 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTL-----CEKLERSRDT 353 DM +GV LL D+ AR A L+ +N R+ +EQ M +L+ R Sbjct: 305 DMRIGVDCLLADDPISARQYAMTLNEINHERRALEQEMLFSLKKQGKSSGLNELDLDRPI 364 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT----LKGSGRSIQGLHMR 409 P ++ +HQGV+GI+A R+KER+ RPV FAP + LK SGRSI G+H+R Sbjct: 365 DPADWVIFDDSFHQGVIGIVAGRLKERWQRPVFVFAPENNDAPRAKLKASGRSIPGVHLR 424 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 D L + T P +M FGGHAMAAGLSL D+ F++ F + + Q V +D Sbjct: 425 DVLVSMATTAPDLMHAFGGHAMAAGLSLSFDQLDTFRRLFAREMAKHRLHFPDQAIVHTD 484 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGE-RHL-------KVMV 521 GPLS E+T++ AQ L+ PWG PEP+FD F +L++ + E RH K Sbjct: 485 GPLSANELTLDFAQQLQTCTPWGTDCPEPIFDNRFEVLERTPLKEGRHWRLRLRLLKTEP 544 Query: 522 EPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIII 571 G L + F + + + LAY++DIN FRG ++LQ++I Sbjct: 545 ATPTIGADLTAVWFGIGDHI---PAGKYWHLAYRIDINRFRGQQTLQLMI 591 >UniRef50_Q0AYS8 Single-stranded DNA-specific exonuclease-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AYS8_SYNWW Length = 932 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 199/584 (34%), Positives = 299/584 (51%), Gaps = 34/584 (5%) Query: 1 MKQQIQLRRRE-VDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLS 55 M+ I + E + E + LL R+ RG+ +E R + + + QL Sbjct: 1 MRNWINGKYDETIVEKIAEELGISCLLARILVKRGISETEEANRFLYGKLEDLNDPFQLK 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++ AV + A G +I+V GD+D DG S + + ++ LG +N Y VP+RF +GY Sbjct: 61 DMDLAVARIEQAIAAGEKIVVYGDYDVDGVCSIVILLECLQLLG-ANCSYYVPDRFLEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL+ + +++ + G QL++TVD GISS A + A LG+ +I+TDHH P D LP A AII Sbjct: 120 GLNSDAIEKLASEGCQLLITVDCGISSLAEGQLACDLGMDLIITDHHRPLDKLPPAVAII 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP L S LAG GVAF L AL +Q L L+LVAL TVA Sbjct: 180 NPKLGGGA-GSSDLAGAGVAFNLAAALWRGRMEQ----------EKLYNWLELVALATVA 228 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL ++NRI+ G+ +I R G++ALL + + L + F LGPRLN+AG Sbjct: 229 DIVPLRSDNRIMVKYGLKKIGQT-SRKGLRALLRETALEGKNLRTWHIAFVLGPRLNSAG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK-LERSRDTL 354 RL+ + LLL + A +A L +N+ RK IE+ + EA+ E+ ++ +D + Sbjct: 288 RLNSARNSIELLLAQDEKRAASMAAFLCRVNEERKRIEETIFREAVAEIEQHIDLEKDPI 347 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 L + +WH GV+GI+ASR+ E + RP I + GD +GS RSI G+ + AL Sbjct: 348 ---LLLGGEKWHDGVIGIVASRLNEHYRRPCILISWEGD-CGRGSARSIAGIDIFAAL-- 401 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 G + +FGGH MAAGL LE F F+++ E SL E D + P Sbjct: 402 --DYASGFLQQFGGHKMAAGLRLERRNFPAFKEKILEWAATQELSSLKPSERKIDAEIKP 459 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGE--RHLKVMVEPVGGGPLLD 531 A++ + + L P G+ P PLF + L+G+ H K+ EP L+ Sbjct: 460 ADINEALLKELELLQPCGEGNPVPLFLLRQVSINSAALIGKGREHFKIKTEP----DELE 515 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 GIAFN + L ++L NE++G + +Q+ + ++ Sbjct: 516 GIAFNQAQYMELPWRNSCQDLLFELTENEYQGRKRIQLKVKDMK 559 >UniRef50_A4XHU1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Clostridia RepID=A4XHU1_CALS8 Length = 803 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 192/582 (32%), Positives = 308/582 (52%), Gaps = 32/582 (5%) Query: 2 KQQIQLRRREVDETADLP---AELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQL 54 K++ L+ E + D+ ++ P + ++ +RG+ ++E+ + K + L Sbjct: 5 KKRWVLKECENFDDFDIQIDGRKIRPQIIKVLKNRGIVQKDDIEKFLAPAIKNLHNPFLL 64 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 + +++A+ I++NA R+++ GD+D DG TST L ++ Y +PNRF+DG Sbjct: 65 NDMKEAINIVHNAILHKKRVLIYGDYDCDGVTSTYLLYSNLKKF--LPTSYYIPNRFKDG 122 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YGL+ +++ + +++TVD GIS+ +E+ + G VIVTDHH P D LP A+AI Sbjct: 123 YGLNLDILKRL-EDTFDILITVDTGISAINEIEYLKQKGKIVIVTDHHEPKDKLPIADAI 181 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 INP RD +P + LAGVGVAF L+ AL + + L++ LD+VA+GT+ Sbjct: 182 INPKRRDSTYPFRDLAGVGVAFKLLHAL-----------KLSGLEIKLSKYLDIVAIGTI 230 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ-KLAASDLGFALGPRLNA 293 ADV+PL NRI G+ ++ + G+K L+EVA ++ +L D+ F +GPRLNA Sbjct: 231 ADVMPLVDENRIFAKFGLKLLKYTR-NIGLKKLIEVAGLSSKEELKPFDVSFIIGPRLNA 289 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGR+ D ++ ++LLL D++ EA +A LD N+ R+EIE+ EA + Sbjct: 290 AGRISDANLAMSLLLSDSLVEAEKIARRLDEENRKRQEIEEKTIKEAQKII--TLNKDIL 347 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 + WH GVVGI +S+I E+++RP + F +G LKGSGRSI+G ++ +AL+ Sbjct: 348 RKKIFVLSSQSWHPGVVGIASSKITEKYYRPSLLFTFTDEGILKGSGRSIKGFNLFEALK 407 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 ++LKFGGH AAGLSL D F + + E+ + + V D LS Sbjct: 408 NCSD----ILLKFGGHEHAAGLSLVSDNFDKLDEILNAIAQEY-HFMIFKPAVEIDLVLS 462 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 E+ E+ + P+G PEP F + + R +GE + K G G D Sbjct: 463 LNEIDDELIDQVYLLEPFGVGNPEPTFLIKNIIVENFRFMGEDN-KYYKFFTGNGTKYDV 521 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + F+ +++V + KL+ N F R Q + +I Sbjct: 522 VCFSNLEDEDELVTMKKVDIVCKLEKNIFNSTRRNQFNLIDI 563 >UniRef50_B9E712 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E712_MACCJ Length = 753 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 186/584 (31%), Positives = 298/584 (51%), Gaps = 40/584 (6%) Query: 1 MKQQIQLRRREVDETAD---LPAELPPLLRRLYASRGVRSAQELERSV--KGMLPWQQLS 55 M + + ++ VD ++ + R++ SR + + L + + Sbjct: 1 MDKTVWTVKKPVDTIPAALIKKYDITEINRKILESRHIVTEAALHDIFVADDIHDPFAMH 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 + KAV+ + A I+V GD+DADG TS + V +++S+G + + + +PNRF +GY Sbjct: 61 DMSKAVKRIQTAIDNNEMILVYGDYDADGVTSVTVLVNSLKSIG-AKVGWYIPNRFTEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G + + +AH G LI+TVDNGI H V A LGI VI+TDHH G TLP A AI+ Sbjct: 120 GPNEQAFREAHDAGISLIITVDNGIQGHHEVNVANELGIDVIITDHHEIGQTLPDAYAIL 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P D ++P LAGVGV++ L AL + + LL VA+GT++ Sbjct: 180 HPMHPDGSYPFHHLAGVGVSYKLACALNGQMNEH---------------LLGFVAIGTIS 224 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+V L NR L +G+ + G+KALL+ A+ + + + +GF +GPRLNA G Sbjct: 225 DLVSLTGENRALVKRGLKALNVDTP-IGLKALLKQASFNGE-ITEETVGFIIGPRLNAVG 282 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RLDD + LL DN EA ++ ++D N RKEI + +AL E+ + + Sbjct: 283 RLDDARLACELLQIDNEDEAEWMSEQVDQFNIERKEIVSSITEQALIDVEEKIANGNRF- 341 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALER 414 + + W++GV+GI+ASRI E++H P I D G KGS RSI + M D+LE Sbjct: 342 --IVVAKEGWNEGVLGIVASRITEQYHLPAIVLNIDYDKGYAKGSARSIAQVSMYDSLEE 399 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 L + KFGGH MAAG++L + + +Q + +D ++Q E+ D + Sbjct: 400 TRNL----ITKFGGHHMAAGMTLPIENIERLEQALNNHLDTLIDGEIIQ-EIEIDAAVEM 454 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGER--HLKVMVEPVGGGPLLD 531 +++T++ + P+G F PL + +L + +G+ HLK+ V+ L+ Sbjct: 455 SDITIKNINDMDKLRPFGTDFSAPLLSLMNAKLTDVKQIGQNQAHLKMTVQ-----NTLN 509 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + +N + +V LA L +NE+ GN Q+I+ +I Sbjct: 510 ALMWNEGARISGLPVGSQVNLAGTLQLNEWNGNVQPQMIVRHIK 553 >UniRef50_C7H6M6 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Ruminococcaceae RepID=C7H6M6_9FIRM Length = 713 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 180/538 (33%), Positives = 272/538 (50%), Gaps = 25/538 (4%) Query: 25 LLRRLYASRGVRSAQELERSVKG---MLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 LL + A+RG+ E + G + L+ ++KA + +A I+V GD+D Sbjct: 63 LLAGILAARGITDPAEALTLLSGEEELTDPMLLTDMDKACARILDAIDREETIVVFGDYD 122 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 DG T+TAL ++ +G +N+ ++P+R DGYGLS + H +G QLIVTVDNGIS Sbjct: 123 VDGVTATALLYQHLKGMG-ANVKCMLPSREGDGYGLSKNAIQSIHDKGCQLIVTVDNGIS 181 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLA 201 + E A SLG+ +IVTDHHLP DTLP A A+++P D P K L G GVAF L A Sbjct: 182 ALEEAEFAASLGVDLIVTDHHLPHDTLPKAVAVVDPRRADDTSPFKGLCGAGVAFKLCAA 241 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 261 L + L DL A+GTVADV+PL NR L G+ ++ R Sbjct: 242 L-----------DGCPPEEMLDYCGDLAAVGTVADVMPLTGENRTLVKAGLHLLQHSD-R 289 Query: 262 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 321 PG+ ALL+ + + A ++ +A+ PR+NAAGR+D + L+LC++ A LA++ Sbjct: 290 PGLLALLDEVGLGGKPVTAENVSYAIAPRINAAGRMDSAVTALQLVLCEDEERAAELAHK 349 Query: 322 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 381 L+ +N R+E E + A E + + ++ +WH GV+GI+ASR+ E+ Sbjct: 350 LNEINAARQETEGEIAKAAQAQLEAEPAILE--DRVILIWGRDWHPGVIGIVASRLVEKT 407 Query: 382 HRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDK 441 RPVI + G KGSGRS+QG ++ + + L +L+FGGHAMAAGLS+ E+ Sbjct: 408 GRPVIVVSIDEHGEGKGSGRSVQGFNLHACIASCEDL----LLRFGGHAMAAGLSVREEN 463 Query: 442 FKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD 501 ++R E P L+ + D + +T+E + L P+G P P+F Sbjct: 464 LPELRRRLNEWAAREC-PVLVTPPLECDLSIHLDRITVESVRRLDQLAPYGAENPAPVFL 522 Query: 502 GHFRLLQ-QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDI 558 +++ V E + G + + F + P V A L + Sbjct: 523 LEKAVVEGVYPVSEG-RHCRLRLRQGNACIYAVWFGMHPEQLPYATGDVVDAALSLSV 579 >UniRef50_C5RCA3 Recombination protein J n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RCA3_WEIPA Length = 768 Score = 584 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 185/576 (32%), Positives = 290/576 (50%), Gaps = 36/576 (6%) Query: 6 QLRRREVDETADLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGVEKAV 61 ++ ++ +T + L+ ++ +RG + + L + G+ L ++KA+ Sbjct: 12 EVSNQKAVKTISEAFGVTELIAKILVNRGYDTIEAANAFLRPDLSGLYDPFLLHDMDKAI 71 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 L A G +IIV GD+D DG TSTA+ A+ +G +N+DY VP+RF DGYG + Sbjct: 72 TRLMQAIDNGQKIIVYGDYDVDGMTSTAIMTWALELMG-ANVDYFVPSRFSDGYGPNLAN 130 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 + A G QL+VTVDNG+S V S GI VI+TDHH + LP A AI++P + Sbjct: 131 YQRFAAEGMQLLVTVDNGVSGKDEVAWLMSQGIDVIITDHHELPEELPIATAIVHPRHPE 190 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 +P L+G GVAF + AL E+LDL ALGTVADV+ L Sbjct: 191 GEYPFGGLSGAGVAFKVASALLE---------------EPADEVLDLAALGTVADVMSLT 235 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NRI+ QG+ + RPG+ ALL A + +S +GF + PRLNA GRL+D + Sbjct: 236 DENRIIVKQGLENL-KLDPRPGLAALLAAAGTQLSDIDSSTIGFTIAPRLNALGRLEDAT 294 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 GV LLL D+IG+A+ LA+ +++LNQ R+++ + A +L L + Sbjct: 295 TGVQLLLMDDIGDAKPLADHINSLNQERQQLVTTITAAAQEQAAQL-----RDDPVLVVA 349 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 WH+GV+GI+AS++ E+ +P I GD +KGSGRS+ + AL + Sbjct: 350 GENWHEGVLGIVASKLVEQTGKPTIVLNINGD-EMKGSGRSVPFFDLFTAL----DGHRD 404 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 +M FGGHA AAG+++ + + + + + + + +S A+ T E Sbjct: 405 LMTAFGGHASAAGMTVPTNNLTALRAALHDAAAQQELANAQKPNLQIAAKVSAADFTKEN 464 Query: 482 AQLLRDAGPWGQMFPEPLFDGHFR-LLQQRLV-GERHLKVMVEPVGGGPLLDGIAFNVDT 539 L+ P+G+ PEPLF + Q + + +HL+ + + L IAF Sbjct: 465 FDNLQVLAPFGEGNPEPLFMLDLLGVNQVKTMSDGKHLRFIAQT--DTDQLPVIAFGWGN 522 Query: 540 ALWPDNGV-REVQLAYKLDINEFRGNRSLQIIIDNI 574 G +Q+ + N +RGN S Q+++ ++ Sbjct: 523 QASALAGHFSSLQIIGTMSQNSYRGNISYQLMLRDM 558 >UniRef50_D0MFV1 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFV1_RHOM4 Length = 587 Score = 584 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 201/594 (33%), Positives = 306/594 (51%), Gaps = 36/594 (6%) Query: 1 MKQQIQLRRR-----EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPW 51 M++ +RR V LP L R+ +RG+ + + + + Sbjct: 1 MRKYRWVRRPLPDPSAVATLMAAARYLPEPLARVLVARGITTVEAARAFFRPELDQLHDP 60 Query: 52 QQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRF 111 ++ +E A L A + +++V GD+D DG T+TAL ++ G + Y VP+RF Sbjct: 61 FLMADMEAAARRLARAIEDREQVLVYGDYDVDGTTATALVTSFLKERGVP-VRYFVPDRF 119 Query: 112 EDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAA 171 GYGL+ + +++A G +L++ +D GI++ +AR+ G+ +I+ DHH G TLP A Sbjct: 120 RHGYGLTQKALEEALEAGTRLLIALDCGITAAEEAAYARARGVDLIICDHHTAGATLPEA 179 Query: 172 EAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 A+++P DC +P L+G VAF L+ A L + + LDLVAL Sbjct: 180 VAVLDPKRPDCPYPFPELSGCAVAFKLVQATLQVLGE---------SPEAAYRYLDLVAL 230 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRL 291 T AD+VPL NRIL +G+ +R RPG++ L A + L + F L PR+ Sbjct: 231 STAADIVPLTGENRILMAEGLRHLRRST-RPGLQQLAARARWPLETLTMHGIVFGLAPRI 289 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NAAGRL D + VALLL ++ A LA ELDA N+ R++I++ EA+ E+ +R Sbjct: 290 NAAGRLGDANRAVALLLAEDAATADKLAAELDAANRERQQIDRRTLEEAIVQAERQITAR 349 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 D L +YHP+WH GV+GI+ASRI ERF+RP I D LKGS RSI G+++ +A Sbjct: 350 DD-RHALVLYHPDWHLGVIGIVASRIVERFYRPTILLCAV-DSILKGSARSIAGINIYEA 407 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L + L +L+FGGH AAGL+LEE++ + F++RF E V + P LL + D Sbjct: 408 LRDCEDL----LLQFGGHTYAAGLALEENRLEAFRERFNEAVGARMTPELLVPRLEIDAL 463 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH--FRLLQQRLVG--ERHLKVMVEPV--G 525 L + +LL+ GP G EPLF + + +LVG +HLK V Sbjct: 464 LDLHTLDERFWRLLQRFGPHGPENEEPLFMARDLEVVGEPKLVGGEGKHLKFYVRQRAHP 523 Query: 526 GGPLLDGIAFNVDTALWPDN----GVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 P + I F + L + + LA+ L N ++G LQ+ + ++ Sbjct: 524 DDPPCEVIGFGKERLLPAVQHSRRMGQPLALAFTLQENTWQGQTRLQLRLRDLK 577 >UniRef50_C5QT22 Recombination protein RecJ n=2 Tax=Staphylococcus RepID=C5QT22_STAEP Length = 762 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 174/582 (29%), Positives = 294/582 (50%), Gaps = 38/582 (6%) Query: 2 KQQIQLRRRE--VDETADLPAELPPLLRRLYASRGVRSAQELERSVKG---MLPWQQLSG 56 K L + E +L P+++++ S+ + + ++ ++ LS Sbjct: 10 KYNWDLAEPTEYITEELAKELKLSPIVKKVLESKNLVQEEMIQDVLQDKIINHDPWALSD 69 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV+ + A + RI+V GD+DADG TST + V + LG + + + +PNRF +GYG Sbjct: 70 MQKAVDRINLAIDKSERILVYGDYDADGVTSTTILVNTLSQLG-AQVGWYIPNRFSEGYG 128 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + A+ G LI+TVDNGI H ++ + LG+ VIVTDHH G TLP A AI++ Sbjct: 129 PNALAFQNAYEEGTSLIITVDNGIQGHEEIKMVQDLGVDVIVTDHHEIGRTLPEAYAIVH 188 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P + ++P + L G GVA+ L AL + Q L L A+GT+AD Sbjct: 189 PMHPEFSYPFQYLCGAGVAYKLAQALISHPPQQ---------------FLALAAIGTIAD 233 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V L NR + QG++ + I+A+L+ A + + +GF +GPRLNA GR Sbjct: 234 LVSLTDENRSIVKQGLNILNNN-APVSIQAILKQAGYN-DNINEETIGFIIGPRLNAVGR 291 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L+D S+ LL+ + I EA LA +++ NQ RK+I + EAL L E+ + Sbjct: 292 LEDASLAAELLMSEEIEEAEFLAEQVEHFNQERKDIVSEITEEALALAEEQVQQGHLF-- 349 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERL 415 L + WH+GV+GI+AS++ E + P + KGS RSI + M + L Sbjct: 350 -LLLAKENWHEGVLGIVASKVVETYALPTLILNIDLEQNHAKGSARSIDQVSMFEILNA- 407 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + ++ KFGGH MAAG++++ + ++ + + + + + L+ D L Sbjct: 408 ---HQDLISKFGGHHMAAGMTMDIENIDELRKGLNDWMRQLAETTSLEPRKHVDVLLDER 464 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDG 532 E++++ + ++ P+G F P F+ + + +G+ +HLK+ + G + Sbjct: 465 EISVKNIRDIQRLRPFGTDFNSPTFELKDLNVQSIKAIGQDGKHLKLSL----GENQIAA 520 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + ++ + V L +L INE+ GN+S Q+II +I Sbjct: 521 LYWSNGHLANELEIGQPVNLIGQLQINEWNGNQSPQLIIQDI 562 >UniRef50_UPI00016BFB11 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFB11 Length = 679 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 168/556 (30%), Positives = 291/556 (52%), Gaps = 24/556 (4%) Query: 25 LLRRLYASRGVRSAQE---LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 ++ + A++ + + + L + + L ++KAV + +A + +I + GD+D Sbjct: 19 IIDNILAAKNILDSDKESFLNPKIADLHDPFALLDMDKAVIRILDAISQKQQITIYGDYD 78 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 ADG TST++ + + +G + ++Y +PNRF +GYG++ + + LIVTVDNGI+ Sbjct: 79 ADGITSTSVLYMFLTEVG-AKVNYYIPNRFTEGYGMNIDAILYLADNKTDLIVTVDNGIT 137 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLA 201 + A V+ ARS GI VI+TDHH D +P A I+N +C +PS++LAGVG+ F L+ A Sbjct: 138 AIAEVDFARSKGIDVIITDHHQCLDQIPDAHCIVNYKRPNCTYPSQNLAGVGIVFKLITA 197 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 261 + T L+ + + LDLV++GT+AD+VPL +R++ G+ I + Sbjct: 198 IATTLKLS--------LEEYVYKYLDLVSIGTIADMVPLLQESRVIASLGLKLITHTR-N 248 Query: 262 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 321 PG++ALL + N+++Q + + + F + PR+NA R+ D ++ + L + A LA Sbjct: 249 PGLRALLNIINKNSQPITSYTIAFQVAPRINAISRMSDANLAIELFTTQDTQRAATLAQL 308 Query: 322 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 381 LD N RK E + A + + L + +WH GV+G++AS+I + + Sbjct: 309 LDNNNIKRKAKEAEIVTAAFEYVKN--NIDLSKEKVLVITGTDWHHGVLGLVASKISQHY 366 Query: 382 HRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDK 441 +RP I GD + GS RSI G + +A+ ++K+GGH AAGL++ K Sbjct: 367 YRPTIVCTLDGDKYV-GSARSIDGFSIINAITEQ----QQYLIKYGGHTQAAGLTISASK 421 Query: 442 FKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD 501 + F + + E LD LL ++ D + +E+T+++ L P GQ P+ Sbjct: 422 IRNFTEDINKANYEILDKQLLTPKIYIDATVPLSEVTIDLYNSLSALEPCGQNNSSPILL 481 Query: 502 GHFRLLQQRLVGER--HLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDIN 559 ++ + +G+R HLK+++E LD I F+ N EV++A + N Sbjct: 482 VKGKISKIIHMGKRSEHLKIILE--DNNKFLDVIIFSQGQLSNFLNKGEEVEIAGSISKN 539 Query: 560 EFRGNRSLQIIIDNIW 575 E+ G ++Q ++ I Sbjct: 540 EWNGKTTIQFMMTAIR 555 >UniRef50_Q2YT94 Single-strand DNA-specific exonuclease n=60 Tax=Staphylococcus RepID=Q2YT94_STAAB Length = 757 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 178/582 (30%), Positives = 293/582 (50%), Gaps = 38/582 (6%) Query: 2 KQQIQLRRRE--VDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM---LPWQQLSG 56 K + +L + + + +L P+++++ S+ + Q +E + QLS Sbjct: 5 KYKWKLIKPTEYISDELTSKLKLTPIVKKILESKSIIDEQAIESIISDTDINHDALQLSD 64 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + K +E + A +I+V GD+DADG TST + V ++ LG + + + +PNRF +GYG Sbjct: 65 MTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLG-AQVGWHIPNRFTEGYG 123 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + AH G LI+TVDNGI H ++ + LG+ VIVTDHH G TLP A AI++ Sbjct: 124 PNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIVH 183 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P N+P + L G GVA+ L AL + D LVA+GT+AD Sbjct: 184 PMHPSFNYPFQQLCGAGVAYKLAQALIENVPD---------------YFKALVAIGTIAD 228 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V L NR L QG+ + +C +KALL+ A + + +GF +GPRLNA GR Sbjct: 229 LVSLTDENRSLVKQGLKVLND-QCPTSVKALLKEAGYN-DNIDEETIGFIIGPRLNAVGR 286 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 LDD S+ LL+ D+ EA LA +++ N+ RK+I + EA+ + E ++ D Sbjct: 287 LDDASLACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDLF-- 344 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERL 415 L + WH+GV+GI+AS+I E F P + + KGS RSI + M + L Sbjct: 345 -LLLAKENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSMFEILSA- 402 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + ++ KFGGH MAAG++++ + + + + + E + L D L+ Sbjct: 403 ---HQELIAKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTEN 459 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDG 532 ++T++ + + P+G F P+F+ + + +G + HLK+ + G + Sbjct: 460 DITIKNIRDMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTL----GESNIAA 515 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + + + + + + INE+ GN+S Q+II +I Sbjct: 516 LFWQNGHLEPELQDEQPINILGSVQINEWNGNQSPQLIIQDI 557 >UniRef50_C7XTQ6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XTQ6_9LACO Length = 769 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 180/583 (30%), Positives = 305/583 (52%), Gaps = 37/583 (6%) Query: 2 KQQIQ-LRRREVDETADLP--AELPPLLRRLYASRGVRSAQELERSVKGMLP----WQQL 54 K + Q + ++VD ++ ++ L L +RG +S E++ +K L +L Sbjct: 5 KYEWQRVANQDVDLVNNIQEQCQINAALANLLVARGFQSVHEVQLFLKPQLQQIQKPDRL 64 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++KAV + A ++G +I V GD+DADG T+TA+ + SLG + ++Y +P+RF+DG Sbjct: 65 HDMDKAVARITQAIKQGEQITVYGDYDADGMTATAVMFETLESLG-AKVNYYIPDRFKDG 123 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + + + G QL+VTVDNG++ V A G+ V++TDHH LP A AI Sbjct: 124 YGPNQDAYQRLITGGTQLLVTVDNGVTGKKEVAFAHDQGVDVVITDHHSLPVELPNAVAI 183 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 ++P + L+GVGVAF + AL ELLDLVA+G + Sbjct: 184 VHPQYPGDLYQYGDLSGVGVAFKVAWALLGEFPT---------------ELLDLVAIGEI 228 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+V + N +L G+ +++AG RPGIKALL++A + L + D+ F L PRLNA Sbjct: 229 ADLVSMAKENHVLVKFGIQQLQAG-LRPGIKALLKIAGVQEESLTSQDVSFKLAPRLNAL 287 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ + + GV LL + A LA ++D N+ R+++ + + EAL + + R Sbjct: 288 GRIANGNEGVKLLTTVDEDAAEQLAKDVDQCNRQRQDLVEQITQEALQKAQAPDNLRRRT 347 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALE 413 L + +WHQGV+GI+ASR+ E+ +P I + G+ KGSGRS+ G + AL+ Sbjct: 348 ---LLIVGHDWHQGVLGIVASRLVEKTGKPTIVASVNHGELVAKGSGRSVDGYDLFAALD 404 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + ++ FGGH MA G+S + + + + + ++ G L Sbjct: 405 P----HRKLLTAFGGHVMACGMSFMITQVPAIAKVLEQAAEAQHLDANQKPRLMIAGTLQ 460 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGER--HLKVMVEPVGGGPLL 530 P E+T ++ Q ++ P+G EP+F+ + +R +G+ HLK ++ G L Sbjct: 461 PDEITEKLYQQIQQLAPFGPDNEEPIFEITDPIITSKRQMGKNNEHLKFTLK--GTRQSL 518 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 D +AF + + + ++L K+ +N ++G + Q+++++ Sbjct: 519 DVLAFGKGSNVDFFSPGVHLKLVGKVAVNSWQGRTTPQLLLED 561 >UniRef50_B0K968 Single-stranded-DNA-specific exonuclease RecJ n=11 Tax=Thermoanaerobacteraceae RepID=B0K968_THEP3 Length = 811 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 174/579 (30%), Positives = 301/579 (51%), Gaps = 32/579 (5%) Query: 3 QQIQLRRRE--VDETADLPAELPPLLRRLYASR-GVRSAQE-LERSVKGMLPWQQLSGVE 58 + I ++ + E LP ++ + ++R ++ + L +K + L G++ Sbjct: 6 RWILKENKDSRLSEEVQKTYGLPKIIADMLSARLNLQEVKSFLNPDLKDLYSPYLLRGIK 65 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 +A +++ I + GD+D DG T+T++ L ++ LG + +DY +P R +GYG++ Sbjct: 66 EAKDLIQQHIASKDLITIYGDYDVDGITATSILYLTLKKLG-AKVDYYIPERLVEGYGIN 124 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 E +D+ RG +LI++VD GI+S VE A+ LGI VI+TDHH +P A+ +INP+ Sbjct: 125 EEAIDKIAQRGTKLIISVDCGITSVKEVEKAKFLGIDVIITDHHSIPKEIPQADVVINPH 184 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 L D +P LAGVGVAF L AL ELLD+V++GT+AD+V Sbjct: 185 LPDSEYPFCDLAGVGVAFKLSQALIG---------------EEAYELLDIVSIGTIADIV 229 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NRI+ +G+ R+ + G+KA+++ + + ++ +GF L PRLNAAGRL Sbjct: 230 PLLGENRIIVKEGLKRLNETQ-NIGLKAIIKASGLENIEIDEYHVGFILAPRLNAAGRLR 288 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 V LL+ + E +A L+ N R++IE + EA+ ++ + Sbjct: 289 SAEAAVRLLISQDEKEVEEIAEYLNQENLNRQQIENQILQEAIKKIKETVDLNK--EKVI 346 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 ++ WH GV+GI+ASRI ERFHRP I + G+G KGSGRSI+G ++ ALE Sbjct: 347 VLWDKNWHPGVIGIVASRITERFHRPSILIS-LGEGEGKGSGRSIEGFNLYKALEYCKD- 404 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 ++K+GGH MAAG+++E++ ++F+ + E L L + D + ++ Sbjct: 405 ---YLIKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAKVKNEKID 461 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ--RLVGERHLKVMVEPVGGGPLLDGIAFN 536 +E+A+ ++ P+G P P F + + L G ++ K++V+ + + + F+ Sbjct: 462 IEIAKQVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYKKIIVQKDK--FVYELMLFD 519 Query: 537 VDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + ++IN + G + I + ++ Sbjct: 520 ASEKGNDVKIGDVIDVVGSIEINSWNGIELVVINVKDLR 558 >UniRef50_C1A4A6 Single-stranded-DNA-specific exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A4A6_GEMAT Length = 599 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 198/560 (35%), Positives = 283/560 (50%), Gaps = 26/560 (4%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSGVEKAVEILYNAFREGTRIIVV 77 LP + RL +RG +R ++ L +L E+AV + A R I V Sbjct: 41 LPESVCRLLVNRGYADVDAAKRFLRPRLEHIESPWRLHDAERAVTRIAEAVRSQETIFVH 100 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG +STAL +R LG ++ VPNR DGY L P V A A GA+L++T D Sbjct: 101 GDYDVDGMSSTALLTRVLRDLGAHHVVPFVPNRLTDGYDLGPAGVRAAQAAGARLVITCD 160 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 G S+HA V + GI VIVTDHHLPG +P A A+ NP C K LA VGVA+ Sbjct: 161 CGTSAHAAVAELMTAGIDVIVTDHHLPGHGMPPAFAVCNPRHPACQSADKDLAAVGVAYK 220 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 L LAL R LDLVAL T+ADV PL NR+ G+ + Sbjct: 221 LALALCEVFAVSPNIAHRQ---------LDLVALATIADVAPLRGENRVFVRYGLKLLAE 271 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 PG++AL+ + DA+ L A +GF L PRLNAAGR+ D +G+ LLL + EA V Sbjct: 272 TT-HPGLRALMRSSGLDAKPLTAGRVGFVLAPRLNAAGRIADARLGLQLLLAEREDEANV 330 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 +A EL+ LN+ R+E+++ + +A+ E G + WH GV+GI+ASRI Sbjct: 331 IARELEELNRARQELDRTVLDDAMRQVESPAMRDQV---GFVLSREGWHAGVIGIVASRI 387 Query: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 E RP + A DG KGSGRSI + L L+ ++GGH AAGL++ Sbjct: 388 VEHTARPAVLVA-VEDGVGKGSGRSISAFDLHAGLGACADLFQ----RYGGHRAAAGLTM 442 Query: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 + + F +RF + L L E+ D +S + E+ +L+R P+G P Sbjct: 443 DAAQLPAFAERFDAVARAQLSADDLVPELRVDLDVSIHAVGEELEKLVRHFEPFGIGNPS 502 Query: 498 PLFDGHFRLLQQ--RLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYK 555 P F L R VG L++ V+ GG L+GI + + + + + +A++ Sbjct: 503 PTFRADGVRLAAPTRRVGTDGLRISVDTTGG--TLEGIGWGLAARMPRLDVSQAYDMAFR 560 Query: 556 LDINEFRGNRSLQIIIDNIW 575 L+ +E+RG LQ+ + ++ Sbjct: 561 LERDEYRGVSRLQLKLTDVR 580 >UniRef50_C4GBT7 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GBT7_9FIRM Length = 590 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 188/607 (30%), Positives = 300/607 (49%), Gaps = 51/607 (8%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQ---ELERSVKGMLPWQQLSGV 57 M + + ++ + + + R+ +RGV L S+ + L V Sbjct: 1 MSKWLLTNKKADFKALARANGIDQVTARVMVNRGVAEEDFDAYLHPSLDQIRNPHDLKDV 60 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 ++A ++L A G +I ++GD+D DG ST + A+ + +++DY++P R EDGYGL Sbjct: 61 DRAADLLSEAIDAGKKIRIIGDYDIDGIQSTYILHQALLTCQ-ADVDYVLPKRIEDGYGL 119 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG---------DTL 168 + +V+ AH G LI+T DNGI++ + A+ LG+ VIVTDHH D L Sbjct: 120 NSHLVEDAHESGVSLIITCDNGIAAKEAIARAKDLGMMVIVTDHHEVPFAMADGKRLDRL 179 Query: 169 PAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDL 228 P A+AI+NP DC +P K + G VA+ L+ L +++R +++ + L+ Sbjct: 180 PPADAIVNPKQADCPYPFKEICGAVVAWKLVFVL---------YEKRGVSVTLAMDFLEN 230 Query: 229 VALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALG 288 A TV DV+PL NR + G+ R+R PG+ AL+ V D L+A +GF LG Sbjct: 231 AAFATVGDVMPLVDENRTIVSLGLERLRKT-SNPGMAALMRVREIDPDHLSAYHIGFILG 289 Query: 289 PRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLE 348 P LNAAGRL+ LL +A VLA +L ALN+TRK + +A T ++ + Sbjct: 290 PCLNAAGRLETAEKSTRLLEEKEPEKAWVLAEDLAALNETRKAMTARGLEDAFTQIKEGD 349 Query: 349 RSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAP-AGDGTLKGSGRSIQGLH 407 ++D L +Y P+ H+ + G++A ++KE RP + +G +KGSGRSI Sbjct: 350 YAKD---PVLVIYLPKLHESIAGLVAGKVKESLWRPCFILTDASAEGLVKGSGRSIPPYS 406 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 M + + R L M++FGGH MAAGLSL DK ++ T L L ++ Sbjct: 407 MFEEMNRCKDL----MVQFGGHPMAAGLSLRRDKIDSLRRALNANCT--LTEDDLLPKIH 460 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ-RLVGERHLKVMVEPVGG 526 D P+ +T+ + + L+ P+G P+PLF L++ R +G + G Sbjct: 461 IDVPMPLHYITISLVEELKRLEPFGNGNPKPLFAVRNVLVRSLRTMGREGQFLKFSLREG 520 Query: 527 GPLLDGIAF--------------NVDTALWPDNGVRE---VQLAYKLDINEFRGNRSLQI 569 ++G+ F + +G R V++ Y+ IN +RG +SLQ+ Sbjct: 521 SSEVEGVYFGDARAFATAVEEAYGQGSWEEFCHGFRRDLAVRMVYEPQINSYRGRKSLQL 580 Query: 570 IIDNIWP 576 +I I P Sbjct: 581 VIREIEP 587 >UniRef50_B0PEB7 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEB7_9FIRM Length = 685 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 175/579 (30%), Positives = 301/579 (51%), Gaps = 31/579 (5%) Query: 3 QQIQLRRREVDET--ADLPAELPPLLRRLYASRGVRSAQELERSVKG---MLPWQQLSGV 57 ++ +R+ + + A LPPL R+ A RG + + + R + G + L + Sbjct: 4 KRWNIRQADDEAARHAAKALGLPPLAVRILAGRGFDTQEAIRRFLTGDCALTDPMALRDM 63 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 ++AV+ + A EG +I V GD+D DG ST + + S G +++ Y +P+R +GYGL Sbjct: 64 DRAVKRIRRAIAEGEKIAVYGDYDCDGILSTVVLYSYLESAG-ADVCYYIPHRDREGYGL 122 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + E + G +L++TVDNGI++ V A S+GI V+VTDHH P D LP A A+++P Sbjct: 123 NREALQIIRDDGVRLVITVDNGITAVDEVAFAASIGIDVVVTDHHKPRDMLPQAVAVVDP 182 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 + D + LAG+GVAF L+ AL E + L + DL+A+ TVAD+ Sbjct: 183 HRLDDESGCEYLAGIGVAFKLICAL-----------EGDDGDLMLEQYGDLIAVATVADI 231 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 VPL NR + +G+ +++ G+ AL+ V ++L+ ++ + + PR+N+AGR Sbjct: 232 VPLIGENRTIVRRGLESLQSTD-NEGLAALIRVCGMADRQLSCENIAYGIVPRINSAGRF 290 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 D + V L E LA ++++LN+ R+ +E + + + + ++ + Sbjct: 291 DCVDNAVELF-SGGCDEPETLAGDINSLNEKRRAVEDQIVRQIMNQLDA--QTEELGRRI 347 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 + ++ WH GVVGI+ASR+ ERF +P I F+ GD +GS RSI+G + DA++ Sbjct: 348 IVIHGEGWHHGVVGIVASRMVERFGKPCIVFSVEGD-VARGSARSIEGFSIIDAIDACSR 406 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 L ++++GGH AAGL++ K F+ + P + Q + D +SP ++ Sbjct: 407 L----LIRYGGHNQAAGLTVSMANLKAFKNAINDWAASHY-PDMPQQTINIDCAISPRQL 461 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ-QRLVG-ERHLKVMVEPVGGGPLLDGIAF 535 T+E L P+G P+F +LQ +G +H++ + G G + + F Sbjct: 462 TVEEIAPLSMLEPFGSGNEPPVFTIRSCVLQGIYAIGDGKHVR--LRFCGDGCVFYAVYF 519 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + A +P V LA +D+NE+ G + + + + +I Sbjct: 520 GMTQANFPYTIGETVDLAVTVDVNEWNGEQRVSVKVRDI 558 >UniRef50_C5CED3 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CED3_KOSOT Length = 1047 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 175/536 (32%), Positives = 278/536 (51%), Gaps = 28/536 (5%) Query: 21 ELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFREGTRIIV 76 + L +L +RG+ E + + + + ++KAV+ + A G I+V Sbjct: 23 GIEAFLAKLLVNRGITDVTEALKYLNPDRTLLHDPFLMKDMKKAVKTIIEAGERGDSIVV 82 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 GD+D DG TSTAL LAM+ +G N+ Y +P R E+GYGLS +++ +++G +L++TV Sbjct: 83 FGDYDVDGVTSTALLYLAMKKMGF-NVSYYIPLRLEEGYGLSRAAIEELYSQGHRLLITV 141 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 D G++S +E A+ LG+ V+VTDHH D LP AEAI+NP D N+P K LAGVGVAF Sbjct: 142 DCGVTSFDEIEFAKKLGLKVVVTDHHEVKDKLPLAEAIVNPKRPDDNYPFKGLAGVGVAF 201 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L+ AL LR N + LD+VALGT+AD+VPL NR + +G +I+ Sbjct: 202 KLLSALNETLRM----------PLNPEDYLDIVALGTIADIVPLRDENRFIVREGTKKIQ 251 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 G+K LL + L A D+ F + P+LNAAGR+D V + LL+ ++ +A Sbjct: 252 KEPL-LGLKILLSYLRINPDNLTAQDIAFKIAPKLNAAGRMDSAVVALELLISEDKAQAM 310 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 A+ L NQ R+ IE + +A E +D + + WH GV+GI+ASR Sbjct: 311 RTASRLLQHNQNRQMIEAKIFEQATKEIESNVSMKDNF--VVVLSGENWHLGVLGIVASR 368 Query: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 + +++RPV + + DG KGS RS G+ + L + + + ++GGH MAAG S Sbjct: 369 LVAQYNRPVFLISTS-DGEGKGSARSPSGISIISLLNKTADI----LDEYGGHEMAAGFS 423 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 ++++K F++R E + L ++ D L+ ++ E + + P+G P Sbjct: 424 IKKEKIPEFRKRLNEAYMDIYGEELPTYKIEVDDVLTLESISPETLKKIDMLRPFGHSNP 483 Query: 497 EPLF---DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVRE 549 EP F + + G H+K+++ G + F ++ V+ Sbjct: 484 EPKFLFKGLNIERTKSFGSGGGHIKMILR--SGERKTLAVGFGMNGLFDEFKYVKP 537 >UniRef50_Q5HNR5 Single-stranded-DNA-specific exonuclease RecJ n=6 Tax=Staphylococcus RepID=Q5HNR5_STAEQ Length = 757 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 179/582 (30%), Positives = 289/582 (49%), Gaps = 38/582 (6%) Query: 2 KQQIQLRRRE--VDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM---LPWQQLSG 56 K + + + E++ +L P+++++ S+ + QE++ +G + LS Sbjct: 5 KYNWDITQPNTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFEGTNISHDYMLLSD 64 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KA++ + A + RI+V GD+DADG TST + V +R LG + + + +PNRF +GYG Sbjct: 65 MQKAIDRIKLAIDQNERILVYGDYDADGVTSTTILVSTLRLLG-AQVGWYIPNRFTEGYG 123 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + A+ G LI+TVDNGI H + + LG+ VIVTDHH G+TLP A AI++ Sbjct: 124 PNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAFAIVH 183 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P + +P K L G GVA+ L L + L A+GT+AD Sbjct: 184 PMHPNFEYPFKYLCGAGVAYKLAQGLIEH---------------PPQHFIALAAIGTIAD 228 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V L NR + QG+ + IKA+L A + ++ +GF +GPRLNA GR Sbjct: 229 LVSLTDENRYIVKQGLKILNNHTPS-SIKAILNQAGFN-DEITEETIGFIIGPRLNAVGR 286 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L+D S+ LLL D EA LA +++ N RK+I + EAL L E+ + Sbjct: 287 LEDASLAAELLLSDEFEEAEFLAEQVEHFNHERKDIVSKITDEALLLAEEQIKQGHLF-- 344 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERL 415 L + WH+GV+GI+AS+I E + P + + KGS RSI+ + M D L Sbjct: 345 -LLLAKEGWHEGVLGIVASKIVETYALPTLILNIDENQNHAKGSARSIEQVSMFDILND- 402 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + ++ KFGGH MAAG+++ D + + + E + L+ + D L Sbjct: 403 ---HQQLIDKFGGHHMAAGMTMSIDNIEHLHKELDMWMKELTVTTSLEPSIKVDAQLEEK 459 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGE--RHLKVMVEPVGGGPLLDG 532 E+ ++ + + P+G F PLF + + +G+ +HLK+ + G L Sbjct: 460 EINIKNIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL----GHSGLTA 515 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + +N + + + L INE+ GN++ Q II +I Sbjct: 516 LFWNHGHLASELEPGQPIHIIGTLQINEWNGNQTPQFIIKDI 557 >UniRef50_Q67LM2 Single-strand DNA-specific exonuclease n=1 Tax=Symbiobacterium thermophilum RepID=Q67LM2_SYMTH Length = 853 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 197/585 (33%), Positives = 303/585 (51%), Gaps = 37/585 (6%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGV 57 + + + + P+ ++ +RG+ + + + + + L + Sbjct: 9 RWRPEPADPAGARLLSRQLSISPVTAQVLINRGLTTPEAAQAFLTPGRDRIHDPFLLKDM 68 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 +AV+++ R G I+V GD+DADG T ++L + + Y +P+RF +GYGL Sbjct: 69 REAVDLIRARLRSGGPIMVYGDYDADGVT-ATATLLLALRALGAEVAYYIPDRFREGYGL 127 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + + ARG IVTVD G+++ A + AR LGI ++VTDHH PG LP A++NP Sbjct: 128 NAGALRSIRARGYDFIVTVDTGVAAVAEAQVARELGITLVVTDHHEPGPVLPDVPALVNP 187 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 DC +P K LAGVGVAF L LAL PN +LLD+V LGTVAD+ Sbjct: 188 RRPDCTYPFKGLAGVGVAFKLALAL---------------GAPNAWDLLDIVTLGTVADM 232 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 +PL NR + +G+SR+ A RPG++AL++VA + A +GFALGPR+NA GR+ Sbjct: 233 MPLVDENRAIVREGLSRLGATH-RPGLRALMQVAGVQP-PVTAGHVGFALGPRINALGRM 290 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 GV LLL ++ A LA LD N+ R+EIE + L + + Sbjct: 291 SSAEAGVELLLTEDPARAEELARRLDEENRARQEIEAAILE--EALAQAAALPPEEREYA 348 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 L + WH GVVGI ASR+ E +HRP I + GD ++GS RSI G HM+ AL ++ Sbjct: 349 LVLAGEGWHHGVVGICASRVLEVYHRPTILLSIEGD-EVRGSARSIPGFHMQRALLQMSE 407 Query: 418 LYPGMMLKFGGHAMAAGLSLE-EDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 L+ +FGGHA AAGLSL D ++R L EWL P L E D ++ + Sbjct: 408 LF----TRFGGHAAAAGLSLRGRDLVPELRRRMNRLAAEWLRPEDLVPEQRVDAFVALDQ 463 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGER--HLKVMVEPVGGGPL--LD 531 + + + L P+G P P+ +++ R +G HLK+ + P G G ++ Sbjct: 464 IDEGLIRELEALEPFGLGNPAPVLATDGLQVVDGRAIGRNGQHLKLFLRPDGDGAAAPVE 523 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + +N+ A+ R + +AY+ +IN + G +Q+++ ++ P Sbjct: 524 AVGWNMAVAMPE--PGRRIAVAYEPEINTYMGRSRIQLVLKDMKP 566 >UniRef50_A8YVP8 Single-stranded-DNA-specific exonuclease n=6 Tax=Lactobacillus RepID=A8YVP8_LACH4 Length = 757 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 175/583 (30%), Positives = 298/583 (51%), Gaps = 42/583 (7%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSG 56 MK Q Q E+ +L P+ RL+A RG+ + ++L+ + + Sbjct: 1 MKWQ-QRTAEELAPDLVEKYQLSPISARLFALRGINTDEKLDFWFNATEENLTDPSLMHD 59 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV+ + A G +I + GD+DADG T+T + A+ LG +++ Y +P+RF+DGYG Sbjct: 60 MDKAVDRINQAIDNGEKITIYGDYDADGITATTIMTEALSILG-ADVHYFIPDRFKDGYG 118 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + + A G +LI+TVDNG++ VE+A+ G+ I+TDHH + P A AI++ Sbjct: 119 PNLDRYKDIVADGTKLIITVDNGVTGIEEVEYAKEHGVDTIITDHHTFQENKPDAYAIVH 178 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 N +P G GVA+ + L + ELLDL +GT+ D Sbjct: 179 CNYPGQEYPFDDYCGAGVAYTICRELMQ---------------DPVPELLDLAMIGTIGD 223 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V + I+ +G+ + + RPG++AL++ A + + +D+GF + PRLNA GR Sbjct: 224 MVKVTGEGHIIVKRGLDVLNQTE-RPGLRALIKNAGLTLETINETDVGFNIAPRLNAVGR 282 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L + ++ V LLL D+ EA+ +A++++ LN RKE+ + + L + + Sbjct: 283 LANANLAVELLLSDDDLEAQKIADQIEDLNNKRKELTTEVYDRCMELVRENSWQKQNT-- 340 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 L +Y P++H+GV+G++A++I E+ H+P I +G +KGSGRS G ++ DAL L Sbjct: 341 -LVLYDPDFHEGVLGLVANKIVEKLHKPTIVLTKNDEGEIKGSGRSFSGFNLFDALNPLK 399 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 ++ KFGGH A GLS+EEDK +++F +D L E D L + Sbjct: 400 E---SLLTKFGGHDFACGLSMEEDKVNDLRKKFE--ADFHVDGGLETKE--YDMELPMHD 452 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGI 533 ++ + + GP+G P+P+F + +G + H+K+ G + + Sbjct: 453 LSPQTLAQINQVGPFGTGDPQPIFSISDPTITHFFKIGKDKNHVKLTANKKDGNLAI--V 510 Query: 534 AFNVDTALWPDNGVREV--QLAYKLDINEFRGNRSLQIIIDNI 574 FN D + +N + ++ L +N +R SLQ I++ I Sbjct: 511 GFNKD---YLNNNLLPFISKIFVTLSLNTYRKQVSLQGIMEGI 550 >UniRef50_B8HKK4 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Chroococcales RepID=B8HKK4_CYAP4 Length = 813 Score = 573 bits (1477), Expect = e-162, Method: Composition-based stats. Identities = 181/591 (30%), Positives = 296/591 (50%), Gaps = 34/591 (5%) Query: 3 QQIQLR--RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLS 55 Q+ Q+ + + E L PLL ++ +RG+ + +++++ ++ P + + Sbjct: 22 QRWQVAPVQSRLAEQIARMTGLDPLLAQVLINRGLETPEQVQQFLEPESLILPSPLTEFA 81 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 + +VE+L A I + GD+DADG TSTAL + A + ++Y +P+R ++GY Sbjct: 82 DLGLSVELLLQAIAAQKEIAICGDYDADGMTSTALLLRA-LQALGARVNYAIPSRMQEGY 140 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL+ +V++ G QLI+TVDNGI++H + AR LG+ VIVTDHH LP A AI+ Sbjct: 141 GLNERIVEEFAGSGVQLILTVDNGIAAHRPITRARELGLAVIVTDHHDLPPELPCANAIL 200 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP L + P LAGVGVA+ L ++L L + LL+L LGT+A Sbjct: 201 NPKLLPHSSPYAGLAGVGVAYILAVSLAQSLGRTEDL---------VTALLELFTLGTIA 251 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVAN-----RDAQKLAASDLGFALGPR 290 D+ PL NR +G++ + + GI+AL++V+ ++ Q +GF LGPR Sbjct: 252 DLAPLTGVNRRWVKRGLALLPRSR-FAGIQALIQVSGGLTSKQENQAFKPEAIGFRLGPR 310 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NA GR+ D + LL D+ A A + NQ R+++ + ++ EA+ E + Sbjct: 311 INAIGRIGDPQTVIDLLTTDDPMLAYAQAMVCEQTNQKRQQLCEEIEREAIAQLEAAQLD 370 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRD 410 + L + HP+WH GV+GI+ASR+ ER+ PV + G ++GS R I + Sbjct: 371 LER-ERVLVLVHPDWHHGVIGIVASRLVERYGVPVFIGSYEEQGQIRGSARGIPEFDVFG 429 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 AL+ L +LKFGGH A G SLE D+ + R + L P L+ V D Sbjct: 430 ALQYCQDL----LLKFGGHRAAGGFSLEADQLPALRSRLRDFAHLQLQPEQLKPLVTVDV 485 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGER--HLKVMVEPVGGG 527 + +++T E+ + P G PEP+F +++Q+ +G+ HLK+++ Sbjct: 486 EVHLSQITWELYHQIDRLHPCGIGNPEPVFWSAGVEVVEQKRIGKDQAHLKLVLAQTDLD 545 Query: 528 PLLDGIAFNVDTALWPDNGVRE--VQLAYKLDINEFRGNRSLQIIIDNIWP 576 I + W + +AY L N + G L++ + + P Sbjct: 546 SP-QKIQWKATAWRWGRYYPLPTHLDVAYHLQSNTWNGETKLELELIGVRP 595 >UniRef50_A8ZTX7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTX7_DESOH Length = 573 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 195/583 (33%), Positives = 296/583 (50%), Gaps = 20/583 (3%) Query: 1 MKQQIQLRRREVDETADLPAELP--PLLRRLYASRGVRSAQELERSVK----GMLPWQQL 54 M + I R+ + + LP + L +RG+ S ++ + + + Sbjct: 1 MTRNINTRQPDPSAVTAIAKALPCSDIAASLLVNRGILSVKQARHFLSATVADLPSPFSM 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 G++ AV +++A I+V GD+DADG T+TAL V + G + + + +P+R +G Sbjct: 61 KGIDTAVARIHSALINHETILVFGDYDADGITATALLVGFLTQAG-ATVRHHLPHRILEG 119 Query: 115 YGLSPEVV-DQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 YGL P + + A A L++TVD GI+SHA R GI +I+TDHH P A A Sbjct: 120 YGLKPRHITEVAATHKASLLITVDCGITSHAAALACREAGIDLIITDHHQAPAEPPTALA 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 +I+P C LAGVGVAFYL++ALR FLR++G++ R PNL DLVA+G Sbjct: 180 VIDPAQAGCPSGLGDLAGVGVAFYLLIALRAFLREKGFWKTR--PEPNLKACCDLVAIGA 237 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +AD+VPL NRIL G+ +R RPGI+AL+ A L+A D+ F L PRLNA Sbjct: 238 IADIVPLTGENRILVRTGLELLR-TPSRPGIEALIAGAKIKKPALSAEDVAFRLAPRLNA 296 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 GR+D + + LLL + A +A L+ LN R+ IE+ + E + + Sbjct: 297 PGRIDHAATALELLLAETKEVAVKIAGRLNRLNTKRQMIEEEISGEIQQIVNDRINT-IK 355 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 L + H +WHQGV+GI ASR R+ PV +GD + GS RSI GLH+ DAL+ Sbjct: 356 ERRSLVLAHRQWHQGVIGIAASRAARRYSLPVALITISGDMGI-GSARSIPGLHLYDALK 414 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 L+ FGGHA AAG + + F+ +F +V + P V D L+ Sbjct: 415 GCARLFED----FGGHAQAAGFRIRMENLAAFETQFEYIVRQQTTPGDFVPAVEVDCELA 470 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 +T + + + P+G PEPLF + R ++ RH K+ + G + Sbjct: 471 MDRITNTLVREIEGLSPFGAGNPEPLFSARNVRASDTFMINGRHRKMTLAHPGTDRGIAA 530 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 I FN + + R + ++L + + G+ + QIII++ + Sbjct: 531 IWFNTPASHQESSFFRR--ILFRLRQDTWNGSGAPQIIIEDAF 571 >UniRef50_Q02C20 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02C20_SOLUE Length = 582 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 193/561 (34%), Positives = 279/561 (49%), Gaps = 30/561 (5%) Query: 27 RRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDA 82 R+ A+RG A R ++ + + + A+E + A R+ RI++ GD+D Sbjct: 38 ARVLAARGFGDADAARRFLEPAFEELHDPLSMRDMPAAIERIARAIRDRERILIYGDYDV 97 Query: 83 DGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISS 142 DG TS L + G Y VP+R +DGYG+ PEVV+ A +G +LIV+VD GI + Sbjct: 98 DGTTSVVLLTKVIELAG-GEARYHVPHRLKDGYGMRPEVVEAAAEQGVKLIVSVDTGIRA 156 Query: 143 HAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLAL 202 V A LGI VIVTDHHLP LP A A++NPN DC + K+L G GVAF ++ AL Sbjct: 157 GEVVRRANELGIDVIVTDHHLPETELPPALAVLNPNRLDCGYMEKNLCGAGVAFKVIQAL 216 Query: 203 RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRP 262 L GW ++ + L L A+ TVADVVPL NRI+ G+ + + Sbjct: 217 ---LPHIGWPADKVRRVS--ESFLKLAAIATVADVVPLTGENRIIVACGLRGLGTVR-NV 270 Query: 263 GIKALLEVANR--DAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLAN 320 G++ALL+VA DA A + F + PR+NAAGR+D V L L + AR LA Sbjct: 271 GLRALLDVAGFTPDATPPNARQVAFQIAPRMNAAGRMDTARAVVELFLTSDAERARELAK 330 Query: 321 ELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKER 380 +L N R+ +E ++ + D L Y WH+GV+GI+ASR+ ER Sbjct: 331 QLHEQNAERQAVEAEIRETCEQIA------VDGAESALVYYAENWHRGVLGIVASRLVER 384 Query: 381 FHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEE 439 HRPV + DG +GSGRSI H+ +ALE + P + LKFGGH AAG+++E Sbjct: 385 LHRPVFVLSRNPEDGLAQGSGRSIPAFHLLEALESM----PELFLKFGGHKHAAGVTMEA 440 Query: 440 DKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPL 499 + F++RF L + V D L E+ + L P+G P P+ Sbjct: 441 ARVVEFRERFNAFAATRLSAEDYRRRVEIDAVLELGEINEQTTGELFGLAPFGHGNPPPM 500 Query: 500 FDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDI 558 F + + + E+HLK+ V G G L +N + V LA+ L+ Sbjct: 501 FAVLNVEVASSVVWKEKHLKLNVRQNGRGLSLKA--WNFAARVGELPPGARVDLAFNLEE 558 Query: 559 NEF---RGNRSLQIIIDNIWP 576 + + RG + I+ ++ P Sbjct: 559 DAYSAARGYPAWAAILRDVKP 579 >UniRef50_C4G696 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G696_ABIDE Length = 580 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 175/594 (29%), Positives = 305/594 (51%), Gaps = 37/594 (6%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGV 57 + ++ R + D A + + R+ +RG+ + ++++ + + + + + Sbjct: 4 RWYMRTIRGDFDGIAA-RFGISKIAARVLVNRGMSNDEDIDEYLNAEEKELARPELMRDL 62 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 A EIL EG +I ++GD+D DG ST + RS+G ++I Y++P+R +DGYG+ Sbjct: 63 TNACEILNRKINEGEKIRIIGDYDVDGVCSTFVLYDFFRSMG-ADISYVIPHRVQDGYGI 121 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG--DTLPAAEAII 175 + ++V++A G IVT DNGI+++ V+HA+ +G+ V++TDHH + LP A+ + Sbjct: 122 NIDIVNKAKEDGIDTIVTCDNGIAAYEQVKHAKEIGLTVLITDHHDIPVNNDLPPADTVT 181 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP DCN+P K L G GVA+ L+ ++ + + + L AL T+ Sbjct: 182 NPKREDCNYPFKGLCGAGVAYQLI----NHYAEKYGNNSAKLKTEIKNKYLAFTALATIC 237 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR-DAQKLAASDLGFALGPRLNAA 294 DV+ L NRI+ +G+ I + G++ALLEV+ + ++ GF +GP +NA+ Sbjct: 238 DVMELIGENRIIVKKGLKAIYNTE-NVGLRALLEVSGLVNKDEITVYHCGFIIGPMINAS 296 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRL+ + L L + A ANEL LN RK+I + I A + E E D + Sbjct: 297 GRLESAVKAIKLFLESDRERALSEANELQGLNNERKDITEQSLIRATEIAESSEYLNDKV 356 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 L P+ H+ + GI+A RIKE+F++P + F A G +KGSGRSI+ +M + + + Sbjct: 357 LVILV---PDCHESIAGIVAGRIKEKFYKPTLIFTYAERG-IKGSGRSIEDYNMFEEISK 412 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLE----EDKFKLF---QQRFGELVTEWLDPSLLQGEVV 467 + KFGGH MAAG SL+ E++ ++F ++ E L L+ ++ Sbjct: 413 CSECFS----KFGGHPMAAGFSLKGETTEEQIEVFNKLRKMLNE--NTTLTEEELKPKIF 466 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ-QRLVGERH--LKVMVEPV 524 D L P +T E+ + L P+G P F +Q R++G+ + +K+ + Sbjct: 467 FDMELPPYYVTEELIEELLRFEPYGTGNKVPTFARRNMYIQTYRVIGKNNNAIKLELTDG 526 Query: 525 GGGPLLDGIAFNVDTALWP---DNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 G G + + I F + + +++ + Y INE+RG +++Q+ I+ Sbjct: 527 GEGQVHNAIWFGDASVFEEYLLNKEEKKLDIIYSPQINEYRGFKNIQLKIEEYR 580 >UniRef50_C6X239 Single-stranded-DNA-specific exonuclease recJ n=2 Tax=Flavobacteriaceae RepID=C6X239_FLAB3 Length = 570 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 165/589 (28%), Positives = 297/589 (50%), Gaps = 32/589 (5%) Query: 1 MKQQIQLRRREVDET---ADLPAELPPLLRRLYASRGVRSAQELERS----VKGMLPWQQ 53 M Q+ R +ET ++ RG+ + Q+ + + Sbjct: 1 MSQKWIYRPEPDEETVDAISSSLGFGTFESKILVMRGIDNYQKAREFFKPNLNDIHNPFL 60 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSL-GCSNIDYLVPNRFE 112 + ++ AV+ + A G +I+V GD+D DG T+ AL L + + ++Y +P+R Sbjct: 61 MKDMQIAVDRVATAIENGEKIMVYGDYDVDGTTAVALMYLYLSKIVDKKYLEYYIPDRNI 120 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 +GYG+S E +D A G LI+ +D GI + V++A+SL I I+ DHHLPGD +P A Sbjct: 121 EGYGISIEGIDHAKNNGFSLIIALDCGIKAIDKVDYAKSLAIDFIICDHHLPGDEIPDAV 180 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A+++P +DC +P K L+G GV F L L + + I L EL DL+A+ Sbjct: 181 AVLDPKRKDCRYPFKELSGCGVGFKLCQGLNSIYK---------IPEAELFELTDLLAIS 231 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 292 AD+V + NR+L QG+ +R + G++ L+ +++ ++ F + P++N Sbjct: 232 IAADIVSMTGENRVLAKQGLKVLRKSR-NLGLRMLIPEEKLATFEIS--NIVFEIAPKIN 288 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 AAGR+ V L++ DN+ +A + N++ LN +R+E++ EAL E+ ++ ++ Sbjct: 289 AAGRISQGKAAVELMVSDNLKQAHQIVNDIITLNDSRREMDMSSTTEALLQVEETQQVQN 348 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 +Y W++GV+GI+ASR+ E + +P + F +G + S RS+ + DAL Sbjct: 349 YTT---VVYGSGWNKGVIGIVASRLTETYFKPTLVFTDGNNGEMVASARSVADFDVHDAL 405 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 E + LKFGGH AAGLS+E+DKF F+++F ++V+E + + ++ D + Sbjct: 406 ENCSEFF----LKFGGHPAAAGLSMEKDKFDKFREKFEKVVSEKIQQHQKEPSLLIDSDV 461 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ--QRLVGER--HLKVMVEPVGGGP 528 P ++ + R P+G +P+ + + + +G+ HLK ++ G Sbjct: 462 IPDDLNKDFFSFHRKLAPFGPHNMKPILAMKNQKISGYVKTMGKDNCHLKFYIKQESTGR 521 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 ++ + F + D R +A+ + N ++GN + + I ++ I Sbjct: 522 NIECVGFKLG-KFVEDFRNRPFDIAFTAEENHWKGNVTYYLNIRDVKFI 569 >UniRef50_UPI0001C37215 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37215 Length = 675 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 171/578 (29%), Positives = 277/578 (47%), Gaps = 26/578 (4%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK--GMLPWQQLSGVEK 59 + + R+ ++ PL A++G + + + S+ G+ + ++ Sbjct: 3 NWTVGVPDRKTVSGLVFGCQVSPLTAAALAAKGYTTPESVADSLNVDGLSDPFMIKDMDI 62 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 A E + A +I V GD+D DG ST + + G +++ Y +P R +GYGL+ Sbjct: 63 AAETINEAIDNEEKICVYGDYDCDGIMSTVILFSYLFEAG-ADVVYYIPER-SEGYGLNK 120 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 +D+ G LIVTVDNGIS+ + E+ G+ +++TDHH GDTLP AEAI++P+ Sbjct: 121 NAIDKIRDDGVSLIVTVDNGISAISEAEYIYECGMKLVITDHHQQGDTLPRAEAIVDPHR 180 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 DC K + G G+A L AL + + + DL A+ TVAD+V Sbjct: 181 HDCPSGFKHMCGAGLALKLTAAL-----------DGGDYTLAMEQFSDLAAIATVADIVS 229 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 L NR L +GM I RP + AL +V + +++ ++ +GF L PR+NA+GR Sbjct: 230 LTGENRFLVSEGMRLI-DNTDRPALLALKKVCGLEDKEIDSTSIGFGLAPRINASGRFGS 288 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 L LC++ EA +A+ELD LN RK E + E + + + Sbjct: 289 PRTAAELFLCEDPDEALDIASELDKLNTMRKSAENDIISEISAMIDS--DPSIIRKRVIY 346 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 + WH GV+GI+A+RI+E F +P A DG ++GS R+ + +AL T Sbjct: 347 LSGKNWHHGVIGIVAARIQEMFGKPCFI-ASETDGEVRGSARAFGEFSVFEAL----TYA 401 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 + KFGGH A G ++++ + F + E + + +D PL+PAE+T Sbjct: 402 SDALSKFGGHPGAGGFTVKDGMTERFGELLEEYAAAN-HEIMPLLSLSADSPLTPAELTF 460 Query: 480 EVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD 538 + + L+ P+G +PLF + + + R +G M++ G + F Sbjct: 461 QNVEDLKKLEPYGMGNEQPLFYIENAEITEIRPMGNG-SHSMIKFKFGTTEYNAKMFRTS 519 Query: 539 TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + P ++ L INEFRGNRSL I++ +I P Sbjct: 520 PDMLPVGKGDPAKMIVTLGINEFRGNRSLDILVKDIRP 557 >UniRef50_UPI0000E87D07 exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87D07 Length = 559 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 231/573 (40%), Positives = 345/573 (60%), Gaps = 18/573 (3%) Query: 5 IQLRRREVD---ETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAV 61 + +++RE++ + + + L + A+R + S E+ +K ++P +L +E Sbjct: 1 MLVKQREINQPLKKLLIDDGVDQHLASILAARNIGSIAEIHYDLKNLIPPNRLYSLEATA 60 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 L+ ++ +I+++GD+DADGAT+TA++VL +R +N+D+LVPNRFE GYGL+ + Sbjct: 61 VFLHQCIKKQKKILIIGDYDADGATATAVAVLGLRKF-LANVDFLVPNRFEYGYGLTIGI 119 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 V +A + +I+TVDNGI+S GV+ AR I VIVTDHHLP D +P A I+NPN ++ Sbjct: 120 VKEALKKTPDVIITVDNGIASIEGVQFARDNNIDVIVTDHHLPADQIPNANFIVNPNQKN 179 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 C+F SKSL GVGV FYL++ALR R+ F E I PNL +L+DLV LGTVAD+VPLD Sbjct: 180 CSFSSKSLCGVGVVFYLLMALRAVFREANEFIE--IQEPNLFDLIDLVCLGTVADLVPLD 237 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NNRIL GM +I+ C GI+A+ +++N+ L SD+ F++ P+LNAAGRLDDMS Sbjct: 238 FNNRILVHHGMKKIKRNSCNFGIQAIAKLSNKSLSHLKTSDISFSIAPKLNAAGRLDDMS 297 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 +G+ LL ++ EA V A EL LN RKEIE M+ +AL + + ++ Sbjct: 298 IGIKCLLSQSLQEAEVFAIELIKLNSQRKEIEVEMKEDALKHI----IFDEEKNYSICLF 353 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 WHQGV+GILASRIKE++ RP I FA +G LKGSGRSI G H+RDAL+ + + Sbjct: 354 DESWHQGVIGILASRIKEKYFRPTIIFAKDANGILKGSGRSIPGFHLRDALDFISKKHSD 413 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 +++ FGGHAMA+GL+++E F+LF + F + L V D + T + Sbjct: 414 LIITFGGHAMASGLTIDEVNFELFVKVFNAHCANVMSKDDLNLVVDVDESILTMNATFDD 473 Query: 482 AQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL 541 + WGQ F P F F L+ Q+ + +H K + G + + I FN L Sbjct: 474 IFKID-MSIWGQGFSPPSFTDEFTLVSQKTLMNKHTKCQLSL--NGKVYEAIFFNFSENL 530 Query: 542 WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +++ Y ++ NEFRG++ +Q+I+ ++ Sbjct: 531 -----PDKIKAIYSIEANEFRGSKKIQLILRDL 558 >UniRef50_C6JNX8 Single-stranded-DNA-specific exonuclease recJ n=3 Tax=Fusobacterium RepID=C6JNX8_FUSVA Length = 860 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 168/556 (30%), Positives = 281/556 (50%), Gaps = 29/556 (5%) Query: 29 LYASRGVRSAQELERSV----KGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADG 84 L +R + +E++ + K + L V+KAV L A + + GD+D DG Sbjct: 31 LLYNRNIIEKEEIKNFLDVDVKNIADPFSLKDVDKAVNRLVQAKENNETVWIYGDYDVDG 90 Query: 85 ATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHA 144 TS +L LA+ LG ++ Y +P R ++GYGL+ E ++ G L++TVD GISSH Sbjct: 91 ITSVSLCFLALSELGI-DVKYYIPLR-DEGYGLNMEAINYIKNEGGTLVITVDCGISSHE 148 Query: 145 GVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRT 204 + HA SLGI +IVTDHH + P A A+INP D ++ K LAGVG AF ++ AL Sbjct: 149 EISHASSLGIDMIVTDHHEINNGNPKALAVINPKREDNDYSFKYLAGVGTAFMMIAALFK 208 Query: 205 FLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGI 264 L + + + LD+VA+GTVAD+VPL NRI +G+ +R + G+ Sbjct: 209 TLDKE----------EEVYKYLDIVAIGTVADIVPLLKENRIFVKEGLEHLRRSRW-LGL 257 Query: 265 KALLEVA--NRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 322 L++ + D +K D+GF + P NA GRL+D V L + + +L Sbjct: 258 NMLIKKIFEDYDIRKFNTYDIGFIIAPIFNAVGRLEDAKKAVELFIEKDHRVCSAAIKDL 317 Query: 323 DALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFH 382 N RKEI++ + +A EK+E + L + +H GV+GI+AS++ +R++ Sbjct: 318 LEKNSERKEIQEEIFEKA---IEKIENEKLYENSVLIVGEKGFHHGVIGIVASKVLDRYY 374 Query: 383 RPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDK 441 +P I D G S RSI+G ++ +A+ L ++K+GGH+ AAG S++ + Sbjct: 375 KPTIIMEIKPDEGIATASCRSIEGFNIIEAINNFSDL----LIKYGGHSGAAGFSIKIEN 430 Query: 442 FKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD 501 + F ++ + ++ S L + D PL +++ + + P+G P PLF Sbjct: 431 IEEFSKKLNDYAKTAMEDSTLIKPIKVDRPLPFYKISYDFLDKISLLEPFGFGNPSPLFS 490 Query: 502 GHFRLLQ-QRLVGERHLKVMVEPVGGGPLL-DGIAFNVDTALWPDNGVREVQLAYKLDIN 559 + RL+G+ +M+ + G + + + FN D +R + +A+KL + Sbjct: 491 LNNCQFDGLRLIGKDKKHIMMNVIKNGNEIRNCVWFNSDDIFENLVNLRNIDIAFKLKLE 550 Query: 560 EFRGNRSLQIIIDNIW 575 ++ ++ I++I Sbjct: 551 TYKDRYQYKMYIEDIR 566 >UniRef50_A2SJG6 Exonuclease RecJ n=8 Tax=Proteobacteria RepID=A2SJG6_METPP Length = 581 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 265/588 (45%), Positives = 370/588 (62%), Gaps = 28/588 (4%) Query: 3 QQIQLRRREVDETADLP-AELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAV 61 QI +R L A + PLL RL+A+RG+ +A++L+ S+ +LP L G A Sbjct: 1 MQIAVRDVPPRTAWSLEQAGVSPLLARLFAARGITAAEQLDDSLALLLPPTALLGAADAA 60 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN--IDYLVPNRFEDGYGLSP 119 +L +A ++ RI+VV D+D DGAT+ A+++ +R LG + + Y+VP+R GYGL+P Sbjct: 61 RLLADATQQRRRIVVVADYDCDGATACAVALRGLRLLGATPETLGYVVPDRQVHGYGLTP 120 Query: 120 EVVDQAHA----RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG-----DTLPA 170 +VD A + ++VTVDNGI+S GV HA++ G+ V+VTDHHLP LP Sbjct: 121 AIVDLAFGVFGGQAPDVLVTVDNGIASLDGVAHAKARGLQVLVTDHHLPALQDDRVVLPT 180 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A+ I+NPN C F SK+LAGVGV FY++LALR+ LR +G FD A P L LLDLVA Sbjct: 181 ADVIVNPNQPGCPFESKALAGVGVMFYVLLALRSELRSRGVFDA--AAQPRLDALLDLVA 238 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPR 290 LGTVADVV LD NNR L QG+ RIR+G+ +PG++AL + A RD + + D GFALGPR Sbjct: 239 LGTVADVVKLDENNRRLVAQGLRRIRSGRMQPGVRALFDAAARDPARASGFDFGFALGPR 298 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 LNAAGR+++M++G+ LL D+ G A LA +LDA+N+ R+E+E GM+ +A + E L Sbjct: 299 LNAAGRMENMTLGIECLLTDDAGRAAELAQQLDAINRERREVESGMREQAEAMLEALVAR 358 Query: 351 RD------TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQ 404 D P LA+Y P +H+GVVGI+ASR+K+R HRP FA DG LKGSGRSI Sbjct: 359 DDHGAGAGDPPPALAIYDPGFHEGVVGIVASRLKDRSHRPTFVFARGQDGLLKGSGRSIP 418 Query: 405 GLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQG 464 G H+RDAL+ + +PG++ +FGGHAMAAG +L E F F++ ++ EWLD + LQ Sbjct: 419 GFHLRDALDLVSKRHPGLLRRFGGHAMAAGATLAEADFARFERALVQVAGEWLDAAALQR 478 Query: 465 EVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPV 524 + +DGPL + + L A WGQ F P+F ++ QRLVGE+HLK+ V Sbjct: 479 TLRTDGPLGAEYFNADTVRALE-AQVWGQAFEPPVFSDRVEVVSQRLVGEKHLKLAVRH- 536 Query: 525 GGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIID 572 GG L D I F +V LAY+L ++E+ G + +Q+I++ Sbjct: 537 -GGALRDAIWFGHSE-----PVAAQVTLAYQLRVDEYNGRQRVQMIVE 578 >UniRef50_C6LAA7 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Clostridiales RepID=C6LAA7_9FIRM Length = 598 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 183/598 (30%), Positives = 297/598 (49%), Gaps = 44/598 (7%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSG 56 M++ + +R + + RL +R V +E + + Q+ Sbjct: 22 MQKWVVAAKRADFGAIAEKFGIDQVTARLIRNRDVVGDAAIEEYLNGSLLNLHSAHQMKD 81 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +KA +L + +I ++GD+D DG +T + A++ G +N+DY +P+R DGYG Sbjct: 82 CDKAAALLADKIDAQKKIRIIGDYDIDGVCATCILYRALQLCG-ANVDYDLPDRILDGYG 140 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ ++D A G I+T DNGI++ V +ARSLG+ VIVTDHH PG+ LP A+A++N Sbjct: 141 LNRNLIDLAGDEGVDTILTCDNGIAAVEEVAYARSLGMTVIVTDHHEPGEVLPEADALVN 200 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P+ + C +P K+L G VA+ L+ L + I +L++L TV D Sbjct: 201 PHQKSCPYPYKNLCGAAVAYKLVTVLCEAM---------GIPQDESEKLIELAGFATVGD 251 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 V+ L NRIL +G+ ++ + PG++AL+ V N +++ + +GF LGP LNA GR Sbjct: 252 VMDLTGENRILVKEGLLQLNHTE-NPGLQALIRVNNLQDKEITSYHIGFVLGPCLNAGGR 310 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 LD + LLL + EA +LA EL LN+ RK + +A+ L E D + Sbjct: 311 LDTAKKSLELLLAQSEAEATLLAEELLELNERRKAMTLEGYEQAVELIENGPMRDDKV-- 368 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 L +Y P+ H+ + GI+A R++ER++RP I G+ +KGSGRSI+ M L++ Sbjct: 369 -LVVYLPDCHESLAGIIAGRLRERYYRPAIVLTQ-GESAVKGSGRSIESYSMFQELQKCA 426 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 L+ LKFGGH MAAG SLE++ ++R L L ++V D P+ Sbjct: 427 DLF----LKFGGHPMAAGCSLEKENVGELRRRLN--AQTTLTQEDLTEKIVIDVPMPLGY 480 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVG-GGPLLDGIA 534 +T + + L P+G+ +P+F + +L R VG+ V + G ++D + Sbjct: 481 ITERLIEELSCLEPFGKGNSKPVFAEKNLDILSARAVGQSGRVVRLRVANAAGTVMDAVY 540 Query: 535 FNVDTALWPD-----------------NGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 F T ++ + Y I+E+ G RS+QI++ Sbjct: 541 FGDATLFREYVEEKYGRTETEKLFQGRRNAVQLSVIYYPSIHEYNGLRSIQIVVQKYQ 598 >UniRef50_Q2S0E3 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0E3_SALRD Length = 584 Score = 566 bits (1459), Expect = e-160, Method: Composition-based stats. Identities = 203/596 (34%), Positives = 314/596 (52%), Gaps = 39/596 (6%) Query: 1 MKQQIQLRRR-EVDETADLPAELPPL---LRRLYASRGVRSAQELERSVKG----MLPWQ 52 M + R E D L EL L L R A R V + +E + + + Sbjct: 3 MTYRWTPRALDEPDVVPRLQRELNDLPAPLARALALREVTTLEEAKHFFRADRSALHDPF 62 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 ++G++ A L +A +GT ++V GD+D DG T TAL +R G ++ + +P+R+E Sbjct: 63 GMAGMDAAAARLSDAIDDGTSVLVYGDYDVDGTTGTALFTDFLRDRGV-DVSFFIPDRYE 121 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 DGYGL +D A RGA L+V +D GI++H +A+ LG+ +I+ DHH P +TLP A Sbjct: 122 DGYGLCRRGLDAAAERGASLVVALDCGITAHEEAAYAQELGLDLIIADHHTPKETLPEAL 181 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A+++P D ++P + L G G+AF L+ A+ R+ A E LDL+AL Sbjct: 182 AVLDPKRPDDDYPFEELPGCGLAFKLVQAV---------LAHRDEAPDAAYEYLDLLALS 232 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAAS-DLGFALGPRL 291 T +D+VPL NR+L +G+ ++ RPG++AL + A+ D Q + ++ ++ F LGPR+ Sbjct: 233 TASDIVPLYGENRVLMAEGLEALQRST-RPGVQALADAADLDLQTVTSTGNIVFTLGPRI 291 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NAAGR++ S V LLL + EA A EL+ LN+ R+ I+ ++ EA+ E+ SR Sbjct: 292 NAAGRMEHASSAVELLLARSYEEAEPHAAELEQLNRERRRIDDTIEEEAVERAERQITSR 351 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 P L +Y P+WH GV+GI+AS I ERFH+P I G+ +KGS RSI+G+++ +A Sbjct: 352 S--PHALVLYDPDWHLGVIGIVASSIVERFHKPTILLTHNGE-AVKGSARSIEGINIYEA 408 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L ++ +FGGH AAG+SLE D F+ RF + V E + P LL + D Sbjct: 409 LADC----EDVLTQFGGHDHAAGMSLEADDIDAFRDRFDDAVGERVTPELLTPSIKVDAS 464 Query: 472 LSPAEMT---MEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVG--ERHLKVMVEPVG 525 + + +L+ GP+G P P+F ++ R VG + HLK V Sbjct: 465 VDLDTIGSVADRFWAVLKQFGPFGPANPTPVFHAEDLDVVSARTVGSDDSHLKFEVRQRD 524 Query: 526 --GGPLLDGIAFNVDTALWPDNGVR----EVQLAYKLDINEFRGNRSLQIIIDNIW 575 G D I F + L + V+L + L+ N + G +LQ+ ++ Sbjct: 525 ASSGQTYDAIGFGMGEKLSVLRESQDTGTPVELLFSLEENTWNGRTTLQLKARDVR 580 >UniRef50_C2M9T5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9T5_9PORP Length = 593 Score = 566 bits (1459), Expect = e-160, Method: Composition-based stats. Identities = 173/575 (30%), Positives = 280/575 (48%), Gaps = 34/575 (5%) Query: 19 PAELPPLLRRLYASRGVRSAQELERS----VKGMLPWQQLSGVEKAVEILYNAFREGTRI 74 +P + RL RG+R+ E +R ++ + + ++ AV+ L A I Sbjct: 24 ALRIPAVAGRLLYRRGIRTEAEAQRFFHPSLEDLHDPFLMQDMDLAVKRLNKALGRKEHI 83 Query: 75 IVVGDFDADGATSTALSVLAMRSLGCSN--IDYLVPNRFEDGYGLSPEVVDQAHARGAQL 132 ++ GD+D DG T+ +L +RS GCS + Y +P R ++GYG+S VD AH GA L Sbjct: 84 MIYGDYDVDGTTAVSLIYKYLRSAGCSEHLLSYYIPGRDDEGYGVSYRGVDHAHEIGATL 143 Query: 133 IVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGV 192 I+ VD GI + + +A++LGI I+ DHH P D LP A A+++P DC++P + L G Sbjct: 144 IIVVDCGIKAINEIAYAKTLGIDFIICDHHHPDDQLPDAAAVLDPKRPDCHYPFEELCGC 203 Query: 193 GVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGM 252 GVAF M A + + +L +LLDLVA+ AD+V + NRIL G+ Sbjct: 204 GVAFKFMQA---------FGMDNGFPSASLFKLLDLVAVSIAADLVSVMDENRILAHYGL 254 Query: 253 SRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNI 312 ++ G+K +++ + +K+ +D+ + +GPR+NA+GR+ + V LLL ++ Sbjct: 255 RQLNRNPSM-GLKGIIKTCGLEGRKITMADIIYKIGPRINASGRMMNGREAVDLLLSNDA 313 Query: 313 GEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGI 372 ++ +D N R+E+++ EA+ L + + +Y P+WH+G++GI Sbjct: 314 KTTARMSELIDEYNVRRRELDRSTTDEAMQLLQ--VNPELAHQPIVVLYQPDWHKGIIGI 371 Query: 373 LASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMA 432 +ASR+ E +RP I D + GS RS+ G+ + +E L +L FGGH A Sbjct: 372 VASRVAEYTNRPTIVLTGTSDRIV-GSARSVGGIDIYSIIEEARDL----LLNFGGHTYA 426 Query: 433 AGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWG 492 AGL+L DK F+ + + D + E+T + ++ P+G Sbjct: 427 AGLTLLPDKLPDFRAYIQSVNAVVDTDRAQSTPIEVDAEIELREVTQRLYTTIQRFAPYG 486 Query: 493 QMFPEPLFDGH--FRLLQQRLVGER--HLKVMVEPV-GGGPLLDGIAFNVDTALWP---- 543 +PLF + + VG H KV P G GIAFN A Sbjct: 487 PDNYQPLFVTQQLYDGGGSKAVGRNGEHFKVDAIPSLGSRKHCPGIAFNQAPAFRFIKKS 546 Query: 544 --DNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 L Y++D N F G SLQ+++ ++ P Sbjct: 547 SAGRASAPFALVYQIDENHFNGVVSLQLLVKDVKP 581 >UniRef50_C0EW92 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0EW92_9FIRM Length = 591 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 170/609 (27%), Positives = 290/609 (47%), Gaps = 56/609 (9%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELER----SVKGMLPWQQLSG 56 M++ +R + P+ RL +R + + +E++R S+ + L Sbjct: 1 MEKWFIASKRADFNKIGEIFHISPVTARLMRNRSLTTVREMQRYLYGSLSDLYDSHLLKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +K EI+ G +I ++ D+D DG +S + ++ G +++DY +P+R EDGYG Sbjct: 61 ADKGAEIIKEKIETGKKIRIISDYDVDGVSSNYILYQGLKRCG-ADVDYKIPDRVEDGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG----------D 166 ++ ++++A G I+T DNGI++ + + SLG+ +IVTDHH Sbjct: 120 INEHLIEKAAEDGIDTIITCDNGIAAAEQIAYGNSLGLTLIVTDHHDIPFQRQEDGSISY 179 Query: 167 TLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL 226 LP+A A+INP +DC +P +++ G V + + L +D I L Sbjct: 180 NLPSAAAVINPKQKDCPYPFENICGAVVVYKFIQVL---------YDLFGIDRRESEVFL 230 Query: 227 DLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFA 286 ++ A+ TV DV+PL NRI+ +G+ RI+ G++AL+E + + +K+++ GF Sbjct: 231 EIAAMATVCDVMPLCDENRIIVKEGLRRIQHTNI-TGLQALIEANHLEEKKISSYHFGFI 289 Query: 287 LGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK 346 LGP +NA+GRL + LLLC++ R A L LN RKE+ A E Sbjct: 290 LGPCINASGRLTSAKDALELLLCEDKELCRQKAEALTQLNAERKEMTANGVKAAKEYLES 349 Query: 347 LERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGL 406 + D + L +Y P H+ + GI+A R+KE +H+PV +G LKGSGRSI+ Sbjct: 350 TGHANDKV---LVVYLPNCHESIAGIIAGRMKEHYHKPVFVITRTKEG-LKGSGRSIEAY 405 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 HM + ++ + KFGGH MAAG S++ED+ + F+++ T L +V Sbjct: 406 HMYKEMNKIKECFD----KFGGHPMAAGFSMQEDRLEEFREKLNANAT--LTEDDFAEKV 459 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEP 523 D L + ++ + P+G +PLF + R++G R LK+ + Sbjct: 460 HIDVALPISYLSESLINEFELLEPFGNENTKPLFAQKDLYIKGMRVLGTTGRCLKLFLSD 519 Query: 524 VGGGPLLDGIAFNVDTALWPD-------NGVREV----------QLAYKLDINEFRGNRS 566 G +D + F + + + + Y +NE+RG ++ Sbjct: 520 A-NGTSIDAMYFGESDVFLEELISFCGKEEAQRIQKGLSHHIWMDVTYYPQVNEWRGQKN 578 Query: 567 LQIIIDNIW 575 +QI+I N Sbjct: 579 IQIVIQNYR 587 >UniRef50_A7HJW8 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Thermotogaceae RepID=A7HJW8_FERNB Length = 989 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 174/584 (29%), Positives = 298/584 (51%), Gaps = 38/584 (6%) Query: 3 QQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 + +LR+ + +L L + +L RG+++ ++ +R + + L Sbjct: 1 MRWELRQVDEHLVQELSERLGVNKFVAKLLVLRGIKTEEDAKRFLNPTRQTLRSPFLLKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +EKAVEIL A G ++I+ GD+D DG T TA+ + G N+DY +P R ++GYG Sbjct: 61 MEKAVEILLRARDNGEKVIIHGDYDVDGITGTAVLYTFLSENGW-NVDYYIPKRVDNGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + P+ V++ +G + I+TVD GI++ V+ A+ LG+ +++TDHH P +TLP A+AI+N Sbjct: 120 IQPQFVEEIVLKGFKTILTVDCGITAFEAVDKAKELGLNIVITDHHQPKETLPNADAIVN 179 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P D +P K AGVGVA+ L+ AL + NI ELLDLVALGTVAD Sbjct: 180 PKRPDDEYPFKEFAGVGVAYKLITALAEKM---------NIPPSVTDELLDLVALGTVAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V L NR + +G+ R+ + GI L++ ++ D+G+ + P+LNAAGR Sbjct: 231 MVELLDENRYIVREGLKRLNNT-AKLGIVRLIQKIGI--ATISTRDIGYRIAPKLNAAGR 287 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 LD L++ + A L L N TR+ IE + EA+ + E + Sbjct: 288 LDSPDDAFKLIVTKDEASATELVEILLGYNVTRQGIEAKIYNEAVQMIES---NNLDSLP 344 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 + Y WH GV+GI+A+R+ +++PV+ + DG +GS RS+QG+++ + LER Sbjct: 345 IVVAYGYGWHLGVIGIVATRLVHLYNKPVMVISI-EDGVGRGSARSVQGVNIIELLERFR 403 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 ++ FGGH MA G SL+E+K + E + E + ++ + D +S E Sbjct: 404 DIFED----FGGHTMALGFSLKEEKIPELIKAIREKIRE--EDIKVEEVIAVDEKISVDE 457 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ-RLVGERHLKVMVEPVGGGPLLDGIAF 535 + ++ + + P+G PEP+F +++ ++ GE + + G ++G+ F Sbjct: 458 INEDLLKSIELLEPYGHGNPEPVFLIQNSPVERFKIFGETGYNIRLTLKGNSNSIEGVGF 517 Query: 536 NVDTALWPDNGVRE----VQLAYKLDINEFRGNRSLQIIIDNIW 575 + + G++ + + L G Q+ + ++ Sbjct: 518 GLKFSPNEMYGIQPQFIRMDVVGNLRT----GEAGPQLNVLDLK 557 >UniRef50_B2IMS8 Single-stranded-DNA-specific exonuclease RecJ n=75 Tax=Streptococcaceae RepID=B2IMS8_STRPS Length = 744 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 182/581 (31%), Positives = 293/581 (50%), Gaps = 36/581 (6%) Query: 2 KQQIQLRRREVD-ETADLPAELPPLLRRLYASRGVRSAQEL----ERSVKGMLPWQQLSG 56 + Q L+ + D A L P + RL RG+++ + L E S++ + L Sbjct: 11 EWQFALQVEDADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLHDAYLLHD 70 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAVE + A EG I+V GD+DADG TS ++ ++ LG + +PNRF DGYG Sbjct: 71 MDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLG-AECRVYLPNRFTDGYG 129 Query: 117 LSPEVVDQAHAR-GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 + V + G LIVTVDNG++ H + A+S+G+ VIVTDHH +TLP A AI+ Sbjct: 130 PNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYAIV 189 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P D ++P K LAG GVAF L AL ++ ELLDLVA+GT+A Sbjct: 190 HPEHPDADYPFKYLAGCGVAFKLACALLEEVQ---------------VELLDLVAIGTIA 234 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+V L NRIL G+ + + R G++ +L++A A ++ +GF + PRLNA G Sbjct: 235 DMVSLTDENRILVQYGLEMLGHTQ-RIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALG 293 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RLDD + + LL + EA +A + N+ RKEI Q + EA T+ D Sbjct: 294 RLDDPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV-------DPEK 346 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + W+ GV+GI+A R+ E + VI DG KGS RS++ + + +AL+ Sbjct: 347 KVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVL-NIEDGRAKGSARSVEAVDIFEALDPH 405 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L+ A AAG++LE ++ Q + V E + + ++ D L Sbjct: 406 RDLFIAFGGH----AGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLE 461 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 +++E + P+G +P+F +F++ R +G + + ++ G + +A Sbjct: 462 ALSLETVKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKISKGEASFEVVA 521 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 F + + ++LA KL +N++ G +LQ+++ + Sbjct: 522 FGQGRWATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR 562 >UniRef50_A8MGN3 Single-stranded-DNA-specific exonuclease RecJ n=11 Tax=Clostridiales RepID=A8MGN3_ALKOO Length = 587 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 176/609 (28%), Positives = 303/609 (49%), Gaps = 56/609 (9%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERS----VKGMLPWQQLSG 56 MK+ ++ + PL+ +L +R + + + + + +++ Sbjct: 1 MKKWFVKNKKFDYGRMSEKFNISPLICKLLVNRSITEERLISSFIDSNLDHLHDPKKMKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 V KA IL + RI ++GD+D DG ST + +A+ G +++DY +P+R +DGYG Sbjct: 61 VVKAASILKSKIETHKRIRIIGDYDVDGVISTYILFMALSKCG-ADVDYDIPDRIKDGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA------ 170 ++ +++++ + G I+T DNGIS+ +++A+ LG+ VIVTDHH Sbjct: 120 INRSIIERSKSEGIDTIITCDNGISAIEPIQYAKDLGLTVIVTDHHDIPFIEDEESKRTF 179 Query: 171 ----AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL 226 A+AIINP +C++ KSL G GVAF L+ L ++ I + L+ Sbjct: 180 ISSCADAIINPKQEECDYEFKSLCGAGVAFKLIQVLYEKMK---------IPMEESFRLI 230 Query: 227 DLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFA 286 + VA+ TV DVV L NRI QG+ I G+ AL++ + +++ ++ LGF Sbjct: 231 EFVAIATVCDVVDLIDENRIFVKQGLEAI-KTTNNLGLMALMKESGIESKSISVYHLGFI 289 Query: 287 LGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK 346 +GP +NA+GRLD+ G+ LL+ ++ E LA EL LNQ RK++ +A+ + E Sbjct: 290 IGPCINASGRLDNAKKGLRLLIAEDREEVDSLAKELYELNQDRKDMTIKGVEKAIEIIEG 349 Query: 347 LERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGL 406 + + +Y PE H+ + GI+A RIKE++H P I + +G +KGSGRSI Sbjct: 350 TDIKNHKV---FVIYMPEVHESLAGIIAGRIKEQYHVPTIVLTKSEEG-VKGSGRSIDCY 405 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 +M + L + L + KFGGH MAAGLSL+ED+ + +++ ++ L L + Sbjct: 406 NMFEELLKCKDL----LRKFGGHPMAAGLSLDEDQVENLREKLNQVTD--LTEEDLIPTI 459 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERH--LKVMVEP 523 D L + E+ + + P+G+ +PLF D + R+++ ++G+ LK+ + Sbjct: 460 NLDMGLEIDRIDYELIEDIERLSPFGKGNNKPLFGDKNIRVIKGHILGQNRNVLKLKLLS 519 Query: 524 VGGGPLLDGIAFNVDTALWPDNGVR-----------------EVQLAYKLDINEFRGNRS 566 G +DGI F A R + +A+ IN + + Sbjct: 520 KQ-GKYMDGIYFGDIKAFEELITTRFGSDELERLYQGSNTNIVIDIAFYPTINTYMERSN 578 Query: 567 LQIIIDNIW 575 +Q+ I++ Sbjct: 579 IQLTIEDFR 587 >UniRef50_Q1IIX8 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIX8_ACIBL Length = 579 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 182/587 (31%), Positives = 296/587 (50%), Gaps = 32/587 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSG 56 M+ + V A + PL+ L A+RG++ + E L S+ + ++ G Sbjct: 1 MRWTQRPFDFSVASRLSAEANISPLVAVLLAARGIKYSDEAWMFLNPSLDALHSPYEMLG 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++ AVE L A + ++++ GD+D DG T+T + A+ G ++ VP+R +GYG Sbjct: 61 MDAAVERLMAAIAKKEQVLIYGDYDVDGTTATVILKTAIEICG-GRAEFHVPHRLLEGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG-DTLPAAEAII 175 + EV+++A A G +LI++VD GI + A E A LG+ +IVTDHHLPG D +P A A++ Sbjct: 120 MRDEVIEKAAADGIRLIISVDTGIRAFAAAETASRLGLDLIVTDHHLPGADGVPKALAVL 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NPN C++P K L G GVAF + AL E++ + L + A+ T+A Sbjct: 180 NPNQTGCDYPCKHLCGAGVAFKVAQALL----------EKSDRARLIPSFLKMAAIATIA 229 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D VPL NR+ G+ +R G+K LL + D + L+ D+ F + PRLNAAG Sbjct: 230 DAVPLTGENRVFVSLGLEGLRK-PVNAGLKELLALCRIDGRTLSTQDVAFRIAPRLNAAG 288 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+D V L + A+ +A L+ LN R+E E + +D Sbjct: 289 RMDVARDVVELFTTRDAKHAKDVAQHLNKLNGDRQEEEARIMAAIEKQLADDASFKDRY- 347 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + EWH+GV+GI ASR+ +R HRP + A +G GSGRSI H+ +ALE Sbjct: 348 -SFVLDGAEWHRGVIGICASRVVDRVHRPALVIAR-HEGEAHGSGRSIPSFHLLNALESC 405 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L+ ++GGHA A G +L ED+ +++ + L P+ E+V D L + Sbjct: 406 ADLFS----RYGGHAHAVGFALPEDRLPQLREKLEAYARQHLKPADFVPEMVYDTELPLS 461 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLL--QQRLVGERHLKVMVEPVGGG---PLL 530 +++ ++ +L+ P+G P+P+F L R + E+H+K+ + P G Sbjct: 462 DVSEKLYLMLQKLEPFGMSNPQPVFVSRGARLAGPARTLKEKHVKMRLAPQSNGGFQRSF 521 Query: 531 DGIAFNVDTALW---PDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + +A+ + L P N + +A+ +D N+ LQ+I+ + Sbjct: 522 EALAWRKNEKLQAEPPLNMGDLLDVAFTIDHNDHPDFGGLQLILCDW 568 >UniRef50_A5FQT9 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Dehalococcoides RepID=A5FQT9_DEHSB Length = 566 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 170/577 (29%), Positives = 275/577 (47%), Gaps = 29/577 (5%) Query: 5 IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM----LPWQQLSGVEKA 60 +L+ + E PPL+ RL +RG+ + + + + +E A Sbjct: 9 WKLK-PALPEETGQNFPYPPLISRLLYNRGITTIEAADLFLSPDKRLNHDPFLFPDMEMA 67 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 V +Y A G +I+V GDFDADG T+TA+ + LG N+ +P+R +GYGL Sbjct: 68 VSRIYKALLAGEKIVVYGDFDADGLTATAVLTTGIARLG-GNVTPYIPHRITEGYGLKIS 126 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 +++ A G L+++ D GI++ ++ A +G+ VIVTDHH P D LP A AIINP + Sbjct: 127 ALEKHRAEGVSLVISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAYAIINPKMP 186 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 +P K LAGVGVA+ L+ AL L + +LLDLVA+GTVAD+VP+ Sbjct: 187 CSTYPCKELAGVGVAYKLIQALYRNLGRED----------EAKDLLDLVAIGTVADIVPI 236 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 NR L +G+ + A RPG+ + +++ ++ + + + PRLNAAGRL+ Sbjct: 237 LDENRYLVKEGVKLLNAEP-RPGLIEMAQLSRLHLGEIETESISWIMAPRLNAAGRLEHA 295 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 G LL I +++ LA L+ N R+++ +A + + P L Sbjct: 296 MAGYKLLTATTISDSQELALWLENKNTERQQLTVRFVEKARAMLDTQFP-----PALLIF 350 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 E QG+ G++A R+ + ++RP I D + GS RSI ++ AL L+ Sbjct: 351 SDAECPQGISGLVAGRLSDEYYRPSIVIKTNAD-SATGSCRSIPDFNIIQALNHFAHLFS 409 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 FGGHA AAG +L + F Q E L L+ + D + + Sbjct: 410 ----HFGGHAQAAGFTLPIENLDAFVQGISAYAEEILSVMELKPFIDIDIDTDLSLLCPA 465 Query: 481 VAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT 539 + L P+G+ P+P+F + R +G + + + G DG+AF Sbjct: 466 TLRELERLAPFGEANPKPVFLSRGLNITDYRSMGSNNEHLKLRIKHKGRFWDGVAFRQAK 525 Query: 540 ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 L V + Y L+++++ G +L++ I ++ P Sbjct: 526 EL-SSFLQSPVDIVYNLELDKWCGTDTLRLKIIDMAP 561 >UniRef50_B1C9H3 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9H3_9FIRM Length = 793 Score = 563 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 162/571 (28%), Positives = 280/571 (49%), Gaps = 27/571 (4%) Query: 11 EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYN 66 + + ++ L L + +G + E+E + + ++K +E L Sbjct: 17 DFIDNLTKQFDISYLSALLLSIKGFSAFGEVETYLNPNISDLYDPFLFKDMKKVMERLKE 76 Query: 67 AFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH 126 R ++++ D+D DG TS+ + + + N ++PNRF +GYGLS E ++ Sbjct: 77 VIRNREKVVIFSDYDCDGVTSSIILYKVLSFMKV-NTKIIIPNRFTNGYGLSDESMEMII 135 Query: 127 ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPS 186 L++T DNGI+S E + GI VI+TDHH P + LP A AIINP + N+P Sbjct: 136 DEEPSLVITTDNGITSVEETEILKDSGIDVIITDHHTPPEVLPEAYAIINPKVEGDNYPF 195 Query: 187 KSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRI 246 L G GVAF + A F +++++L +GT+AD+V L + NR Sbjct: 196 SELCGAGVAFKIACAAVKFFELDF----------DISQILVFAMIGTIADIVSLKSENRT 245 Query: 247 LTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVAL 306 + G+ IR + G+ AL++ ++ D KL ++GF +GPR+NAAGRLDD V L Sbjct: 246 IASLGLDLIRNTNNK-GLNALIKKSDLDKNKLNCGNIGFQIGPRINAAGRLDDAKKAVRL 304 Query: 307 LLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWH 366 L ++ E +L++EL N RK+IE+ + ++ ++ + +L L +Y +++ Sbjct: 305 FLSEDEKEVDILSHELCEYNDQRKDIEESIFKKSEEYIKENDLLETSL--ILYVYGEDFN 362 Query: 367 QGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKF 426 +GV+G+ AS+I ++++RPV+ + + DG +K S RSI G + L+ L+ KF Sbjct: 363 EGVMGVAASKICDKYNRPVVIMSDSEDGFIKASCRSITGFDIFKCLDNSRELFS----KF 418 Query: 427 GGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLR 486 GGH+ AAG S+E + + E + +L V D P P+ + ++ + L Sbjct: 419 GGHSAAAGFSIERENLDRLIEETNEYARKRKIENLFYKRVYYDTPAIPSNLNVKTSLELE 478 Query: 487 DAGPWGQMFPEPLFDGH-FRLLQQRLVGER--HLKVMVEPVGGGPLLDGIAFNVDTALWP 543 P+G + +L R +G+ HLK V G D I F++ L Sbjct: 479 KFAPFGIGNSRSILCLRDVKLTNVRAIGKDGTHLKFSVLY--NGNYYDAIGFSMGHYLRE 536 Query: 544 DNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + + + + + +N ++G LQ I ++ Sbjct: 537 YDFTKSFDIVFTMSVNSYKGREKLQFEIKDM 567 >UniRef50_C3WCZ7 Single-stranded-DNA-specific exonuclease recJ n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WCZ7_FUSMR Length = 853 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 174/583 (29%), Positives = 286/583 (49%), Gaps = 31/583 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSGV 57 + + + +L + L L +R +R +++ + + + L V Sbjct: 3 NTRWIYKENSFSQNTNLNIDRDIL--NLLYNRDIRDEEKIYKFINTSLDNIHSPLLLKDV 60 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 ++AVE + A + + GD+D DG TST+L LA+ +G + Y +P R ++GYGL Sbjct: 61 DRAVERILQAKENKEEVWIYGDYDVDGITSTSLCYLALSEIGITP-RYYIPLR-DEGYGL 118 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + E +D ++G ++I+TVD GIS+H +E+A SLG+ +IVTDHH + P A A+INP Sbjct: 119 NKEAMDYIKSQGGKVIITVDCGISAHPEIEYANSLGLEIIVTDHHEINNGNPPAYAVINP 178 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 D FP K +AGVG AF L+ AL L + L + LD+VA+GTVAD+ Sbjct: 179 KREDNQFPFKYMAGVGTAFMLIYALFDKLEKK----------EELYKYLDIVAIGTVADI 228 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVA--NRDAQKLAASDLGFALGPRLNAAG 295 VPL NRI T GM ++ GI L++ + +K D+GF + P NAAG Sbjct: 229 VPLLEENRIFTKFGMEQLNKSHW-LGISMLIKKIFEDYKTKKFNTYDIGFIIAPIFNAAG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RL+D V L + + + NEL N RKEI++ + AL E + D++ Sbjct: 288 RLEDAKRAVELFIEKDHRVCSEIINELLNNNTERKEIQEMILERALFKIENEKLFEDSV- 346 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALER 414 L + +H GV+GI+AS+I +R+++P I D S RSI+G +M +AL Sbjct: 347 --LVVAEEGFHHGVIGIVASKILDRYYKPTIIMEIKPDERIATASCRSIEGFNMIEALNT 404 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + L+ +K+GGHA AAG S++ + F +R E E + S L V D + Sbjct: 405 MKELF----VKYGGHAGAAGFSIKIENINEFSKRINEYAKENIPESSLIKPVKLDITIPA 460 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPLL-DG 532 +++ + + P+G P PLF + + R +G+ M + + Sbjct: 461 YKISYDFIDKISLLEPFGFGNPSPLFALNNCEISGVRPIGKEKNHTMFNVRKDNLEIRNC 520 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + F+ D + +A+KL + F+ ++ ++++ Sbjct: 521 VWFSSDDVFNEMASISHADIAFKLKLETFKDKYMYKMYVEDMQ 563 >UniRef50_C0WCD6 Exonuclease recJ n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCD6_9FIRM Length = 778 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 176/572 (30%), Positives = 286/572 (50%), Gaps = 26/572 (4%) Query: 9 RREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVEKAVEIL 64 ++ ET L P+L + R + + + + + L +E+AV + Sbjct: 14 DPDLLET-GKALGLSPVLMGILKRRNLTDPEAIRTFLDGSPEPFHDPYGLLHMERAVTRI 72 Query: 65 YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124 A + +I + GD+D DG ++++L L + + +P R +GYGL+ E +++ Sbjct: 73 CEALSKEEKITIYGDYDVDGTSASSLFFLFLTKNLGAKAAVYIPRRDTEGYGLNLEALEK 132 Query: 125 AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNF 184 +A G+ L++TVD GIS ++ A + G+ VI+TDHHL LP A ++NPN ++ Sbjct: 133 IYAGGSTLVITVDTGISGADVIKKAPT-GLDVIITDHHLAPQELPPAYTVVNPNQPGDSY 191 Query: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANN 244 P K + G GVAF L AL + +L++L A+ TVADVVPL N Sbjct: 192 PEKGICGCGVAFKLCQALWQHFHPESAL---------WTDLIELAAVATVADVVPLVGEN 242 Query: 245 RILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGV 304 R + +G+ +I A G++AL++ A R+ + + +GF +GPR+NAAGRLDD + V Sbjct: 243 REIVRRGLKKI-ANTSLVGLRALIQSATREGSPITSDTIGFGIGPRINAAGRLDDAMLAV 301 Query: 305 ALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE 364 LL+ + EA+ L+ EL+ LN R+EI Q + EA + L S G+ + Sbjct: 302 KLLITSDSEEAKTLSRELNDLNAKRQEISQRIFEEAEAM---LTASGKVPTWGIVLAKEG 358 Query: 365 WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMML 424 WH GV+GI+ASR+ E++H P I + DG KGS RSI +H+ ALE ++ Sbjct: 359 WHPGVIGIVASRLTEKYHEPTILMSI-KDGIAKGSCRSIPPVHLYHALEACRL----ALI 413 Query: 425 KFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE-MTMEVAQ 483 +FGGHA AAGL++E DK + F E V L + + EV D + E +T ++ Sbjct: 414 QFGGHAQAAGLTMEADKVDELRHLFTETVKTALHGEIYEPEVEPDYFIPEGEAVTEKIVH 473 Query: 484 LLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALW 542 L P+GQ P P+ + R +G+ + ++ GG G+ + Sbjct: 474 ELERLQPFGQNNPAPILGFERAVITGVRTMGKDGSHLRLDLSSGGYGYKGLLWQEGPRSH 533 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 E +A+ +N FRG ++ + + + Sbjct: 534 YFYEGEEAAVAFVPRLNTFRGVTTVDLEVKAV 565 >UniRef50_B9XN50 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=bacterium Ellin514 RepID=B9XN50_9BACT Length = 577 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 192/593 (32%), Positives = 302/593 (50%), Gaps = 33/593 (5%) Query: 1 MKQQIQLR--RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 MK + L + + + ++ PLL + +RG+ +A+ L ++ + L Sbjct: 1 MKFRWSLSPSQPLLIKQLASVLKVSPLLAQCLVNRGMSNAEALATFLQPRLKELADPFLL 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 + AVE L+ A + ++V GD+D DG TSTAL ++R+LG + +++ +P+R E+G Sbjct: 61 PNMAAAVERLFQARQRKESLVVFGDYDVDGVTSTALLAESLRALGWT-VNFYLPHRMEEG 119 Query: 115 YGLSPEVVDQAHAR-GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 YGLS E V+ + L++ VD G ++ +++ R GI V+V DHH PAA A Sbjct: 120 YGLSQEGVENCLRKFPTTLLLAVDCGSTAVTTIDYLRQKGIDVLVLDHHQVSSPAPAAIA 179 Query: 174 IINPNL-----RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDL 228 ++NP L D + L VG+AF L+ AL R+ G + +L LLDL Sbjct: 180 LVNPQLGPTREEDGKSSFRELCSVGLAFKLVHALVKRGREVGLAEAEKY---DLRPLLDL 236 Query: 229 VALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALG 288 VALGT+AD+VPL NRIL + G+ R+ + RPG+ AL +VA + A ++GF L Sbjct: 237 VALGTIADLVPLTGENRILVYMGLQRL-SSTVRPGLVALKKVAQV-TASMGAYEVGFQLA 294 Query: 289 PRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLE 348 PRLNAAGRL++ + + LL+ ++ A +A LD N+ R++IE+G+ E + Sbjct: 295 PRLNAAGRLENAAEALDLLMAPDMQTAVPIAESLDLRNRERQKIEKGIVEEVIGSVRA-- 352 Query: 349 RSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHM 408 + + WH GVVGI+ASR+ ++F+RP I GD +GSGRSI G + Sbjct: 353 KFNPERDYVIVEGQLLWHVGVVGIVASRVLQQFYRPTIIVGGEGD-EWRGSGRSIAGFDL 411 Query: 409 RDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS 468 AL D L +++ GGHAMAAGL++E K L + R EL + LQ + Sbjct: 412 AAALRDCDDL----LVRHGGHAMAAGLTIEAGKLDLLRVRMNELAQRLIKREELQPLLRL 467 Query: 469 DGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHF----RLLQQRLVGERHLKVMVEPV 524 D ++ E+ + L P GQ P F R LQ+ ++H+K+ + Sbjct: 468 DAEVTLKEINFDSLFELDLLKPTGQGNPVVQFMVRNVTQARPLQRMGAEKQHVKLWL--T 525 Query: 525 GGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 G + + + V LA+ INEF G R++Q+ + + P+ Sbjct: 526 DGTATHEAVWWGAGKDTAL--PVGRFDLAFAPQINEFAGRRTVQLKVLDWKPM 576 >UniRef50_C9RBA5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Ammonifex degensii KC4 RepID=C9RBA5_AMMDK Length = 865 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 176/584 (30%), Positives = 272/584 (46%), Gaps = 42/584 (7%) Query: 1 MKQQIQLRRREVDETA-DLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 M I ++ + + P+L ++ +RGV++ +E + + G + P ++ Sbjct: 1 MSSWIPFPQQPLACALWARELGIDPVLAQILLNRGVKTLEEADFFLNGRLAQLPPPGKMK 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 +E+AV+ + +A +I+V GD+DADG T+T L V ++ LG + Y +P R DGY Sbjct: 61 DLERAVKRIRSAVANQEKILVWGDYDADGITATVLLVSVLKHLGAEEVTYHLPTR-ADGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL + + A +G L++TVD G+ + + +G+ +I+TDHH P D LP A A+I Sbjct: 120 GLKGDFLRAAKEQGVSLVLTVDCGVKASEEARLCKLMGLDLIITDHHEPSDELPEAWAVI 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP DC +P K LAGVGVAF L AL + E LD+VALGTVA Sbjct: 180 NPRRPDCPYPFKELAGVGVAFKLATALSREAAE---------------EWLDVVALGTVA 224 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 DV+PL NR+L +G+ + + RPG+ LL A + L F L PRLNAAG Sbjct: 225 DVMPLVGENRVLVREGLKLFNSSRLRPGLAGLLSAAGASL-PVTVRTLSFVLAPRLNAAG 283 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ D V LL EA + +L+ LN+ R+ E EA L +R+R+ Sbjct: 284 RIGDPDVAARCLLAV-EEEAEQWSRKLEELNRERQRWENACLKEADLLA---KRAREASS 339 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 L + +W G+ G++A R+ + P G+ +GSGR+ + ++ AL Sbjct: 340 RVLVVEASDWPVGLTGLIAQRLHSLYQLPAFVIVWEGE-VGRGSGRADESFNVYQALSHA 398 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 +L +GGHA A G +L + F F E D L Sbjct: 399 SP----YLLDYGGHAGAGGFTLTRESFPHFVASLEEYARNLPPDRTYHACRYFDAVLELE 454 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLV---GERHLKVMVEPVGGGPLLDG 532 ++T + + L P+G P P + + E HL++ + G L+G Sbjct: 455 KLTPRLMEELGRLEPFGPGNPPPRLVAQGVEVVEVRRVGKEEEHLRLRLRQ--GRACLEG 512 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 +AF P R V L ++ INE G ++ I + WP Sbjct: 513 VAFGRGGEELP----RLVDLVFEPSINELTGQ--PELKILDWWP 550 >UniRef50_A9KLD3 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Clostridium RepID=A9KLD3_CLOPH Length = 592 Score = 559 bits (1442), Expect = e-158, Method: Composition-based stats. Identities = 185/612 (30%), Positives = 304/612 (49%), Gaps = 57/612 (9%) Query: 1 MKQQIQLR-RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 MK++ L +R E + P+L R+ +RG+ E++R + M + Sbjct: 1 MKEKWMLEAKRADFEALANRLAISPVLARIIVNRGLSEEDEMQRYLSCDLTEMYSGLMMK 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 G+E+A ++ A E I + DFD DG S A++ +G + Y P+R +GY Sbjct: 61 GMEQARNLIITAVEENQLIAIGTDFDNDGILSGHSLSTALKRIGGRVVVYA-PDRISEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT-------- 167 GL+ +V +A+ G++LI+T DNGI+ +++A+ LG+ V+VTDHH Sbjct: 120 GLNRRIVLEAYEAGSRLIITCDNGIAVFDAIDYAKELGMTVVVTDHHEVAFEEDENGSRT 179 Query: 168 --LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAEL 225 LP A+ ++NP C +P K L G GV + L+ L + ++ L +L Sbjct: 180 FLLPNADVVVNPKQEGCPYPFKGLCGAGVVYKLIELLYEYY---------SVPKEELYDL 230 Query: 226 LDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGF 285 L+ +A+ TVADV+ L + NR++ G+ + K GI+AL+E + ++++A +GF Sbjct: 231 LEFIAIATVADVMDLVSENRLIVKHGLKLLSQSK-NLGIRALIEECGLEQKRISAYHIGF 289 Query: 286 ALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCE 345 +GP NAAGRLD ++V + LL EA+ LA L LN +RK++ +A+ E Sbjct: 290 VIGPCFNAAGRLDTVAVALDLLDAKTTEEAKQLAVSLKKLNDSRKDMTLQGVEQAIERIE 349 Query: 346 KLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQG 405 + D + L + + H+ +VGI+A R++ER+++P + F G +KGSGRSI+ Sbjct: 350 TSDLIHDKV---LVVKLRDTHESLVGIIAGRLRERYNKPALVFVDVEQG-VKGSGRSIES 405 Query: 406 LHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGE 465 +M + L + L + KFGGH MAAGLSL+ + + + R + L L Sbjct: 406 YNMFEELLKCKDL----LTKFGGHPMAAGLSLKAENLETLRARLNQ--NTTLSEEDLIPI 459 Query: 466 VVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERH--LKVMVE 522 V D PL + + L P+G+ +P+F HF++ Q R++G+ LK+ + Sbjct: 460 VRIDIPLPIGYLNEAFLEELEKLEPFGKGNIKPVFAEQHFKIRQARILGKNQNVLKLNI- 518 Query: 523 PVGGGPLLDGIAFNVDTALWPDNGVR---------------EVQLA--YKLDINEFRGNR 565 G +D + F T + EV LA Y +NE+ GNR Sbjct: 519 INSEGFAMDALYFGDITEFNEFAEMEYGKEEVRKMYLGQYNEVDLAFTYYPTLNEYMGNR 578 Query: 566 SLQIIIDNIWPI 577 ++Q+II N I Sbjct: 579 TVQVIIQNYCRI 590 >UniRef50_Q8DJI0 Tll1243 protein n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DJI0_THEEB Length = 775 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 186/588 (31%), Positives = 294/588 (50%), Gaps = 34/588 (5%) Query: 2 KQQIQL--RRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQ-L 54 +Q+ L E + P L +Y RG+ + + ++ + P Sbjct: 25 QQRWLLPPIDPECHDALRRALGCHPSLAEIYLRRGLTTPTAVRAFLEPETLELPPPNAVF 84 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++ AVE+L A G ++ + GD+DADG TSTAL + A+R LG ++IDY +P+R +G Sbjct: 85 PDLDLAVELLQRAIARGDKMTICGDYDADGMTSTALLLRALRHLG-ADIDYEIPSRMHEG 143 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG++ +V + + RG +LI+TVDNGI++ + AR LG+ VIVTDHH LP A AI Sbjct: 144 YGINERIVQECYDRGVKLILTVDNGIAALHPILKARELGLTVIVTDHHDVPPQLPPAHAI 203 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NP L P +LAGVG+A+ L ++L L P + L +L LGT+ Sbjct: 204 LNPKLVPPTSPYHTLAGVGMAYILAVSLAQRL---------GNWRPLVRPLRELCTLGTI 254 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVAN---RDAQKLAASDLGFALGPRL 291 AD+ PL NR QG+ + G++AL++VA L + +GF LGPR+ Sbjct: 255 ADLAPLTGVNRRWVKQGLQTLPTSSL-VGVQALMQVAGCLPEQDASLKPTAVGFRLGPRI 313 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NA GR+ D V + LL D+ A+ LA +A N+ R+++ ++ EA+ E+ + Sbjct: 314 NAIGRIGDPQVVIELLTTDDPDRAQELAALCEATNRRRQDLCAAIEAEAIAHLEETDFDP 373 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 L + P WH GV+GI+ASR+ ER+ PV + ++GS RSI H+ +A Sbjct: 374 QQ-EWVLVIVQPNWHHGVIGIVASRLVERYGVPVFIGTYENETIIRGSIRSIPEFHVFEA 432 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 LE L +LK+GGH A G SL + ++ R L P L+ V D Sbjct: 433 LEATKDL----LLKYGGHKAAGGFSLRAEHLAAWRDRLRAFAQTCLKPEDLRPLVTLDAE 488 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGE--RHLKVMVEPVGGGP 528 +S ++T + + P+G P+P+F ++L+Q +G+ HLK+ +E G Sbjct: 489 ISFEQLTWDFYTQVEQLQPFGSENPQPMFCSRGVKILEQTPMGQQGEHLKLTLEQ--NGQ 546 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + A+ L V +AY L + + G L++ + + P Sbjct: 547 QMTAKAWRWGPFL---PLPTRVDIAYHLTAHTWHGETQLELELKGVKP 591 >UniRef50_D2R2J0 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Planctomycetaceae RepID=D2R2J0_9PLAN Length = 590 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 175/585 (29%), Positives = 280/585 (47%), Gaps = 20/585 (3%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSGV 57 + +I + + L P++ +L +RG+ + + G+ + L G Sbjct: 3 RWRIHAHDADRIAYLERTTGLSPIIVQLLVARGIYQPDAAKEFLDAKFGGLRDPELLPGA 62 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 +A E L+ A +I+V GD+DADG T T++ + ++ L ++ Y VPNR E+GYGL Sbjct: 63 TEAAERLFAAIEAQRKIVVYGDYDADGMTGTSILLGCLKLL-RADASYYVPNRLEEGYGL 121 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 S ++ A+GAQL+++VD GI+S + A+ LG+ +IVTDHH LP A ++P Sbjct: 122 SNTALESLAAKGAQLVISVDCGIASLSEARRAKELGLELIVTDHHEFASELPEAAVCVHP 181 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 L +P L G GVA + AL + L + L A+GTVADV Sbjct: 182 RLPGTAYPFGGLCGAGVALKVAWALCQKASQSKKVTDAMRTY--LLSAMGLAAIGTVADV 239 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR-DAQKLAASDLGFALGPRLNAAGR 296 VPL NRIL G++ + + G+ ALLE+ Q L++ D+ F + PRLNAAGR Sbjct: 240 VPLVDENRILVRHGLTYL-KSQPMIGLGALLELTGLTKKQSLSSEDIAFTIAPRLNAAGR 298 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + V LL DN A LA + LN +R+ +E+ +Q+ A+ ++ D Sbjct: 299 FGQAQLAVELLTTDNASRAASLAEYIHQLNSSRESLERSIQLAAVKQAKEQFNPDD--DP 356 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT--LKGSGRSIQGLHMRDALER 414 L + WH GV+G++A R+ E+F+RPV+ A G GS RS+ G ++ +AL Sbjct: 357 ALVLAGRGWHAGVIGLVAGRLAEKFNRPVVLIALDQLGLKPGTGSARSVAGFNLHEALTA 416 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 G A AAGL +EE K + F++ F E + PS GE+ D Sbjct: 417 SGEHLVGYGGH----AAAAGLRIEESKVEAFREAFCEFAASQIRPSERTGELRIDAESQL 472 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGHFR--LLQQRLVGERHLKVMVEPVGGGPLLDG 532 E+ + + + P+G P PL + + +G + ++ G + G Sbjct: 473 CEVNVSTIRQIEQMEPFGCGNPRPLLCASGVTLVEPPKRIGGGERHIAIKLQQAGVTMRG 532 Query: 533 IAFNVDTALWPD-NGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + F + V + +AY+ INEFRG + ++ + + P Sbjct: 533 VGFGMGDQCDELAQAVGPLDIAYRPVINEFRGRVTAELQLVDWRP 577 >UniRef50_A8F454 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermotoga lettingae TMO RepID=A8F454_THELT Length = 979 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 158/564 (28%), Positives = 276/564 (48%), Gaps = 31/564 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 M+ I+ ++ E A + L ++ +RG+ + R +K + L Sbjct: 1 MRWIIKQVDQQKVEFLSQEAGISLFLAKILVNRGIEDPKIANRFLKPSILDLHDPFLLRD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++ VE+L A E +++ GD+DADG T A+ + G DY +P R ++GYG Sbjct: 61 MDRVVELLLKAREENIPVLIYGDYDADGITGIAVYKEFLDRYGW-VTDYYIPKRMDEGYG 119 Query: 117 LSPEVVDQAHAR-GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 + P V++Q + +++TVD GI++ VE A+ V++TDHH G+ LP A A++ Sbjct: 120 IQPAVIEQFFKKFNKGIVLTVDCGITAIEAVEFAKKFNCLVLITDHHEVGEQLPDAAAVV 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P D ++P K LAGVGVAF ++ A+ L NI I + +LL+ VA+GT+A Sbjct: 180 DPKRPDDDYPFKDLAGVGVAFKVVSAISQKL---------NIQIEEIFDLLEFVAIGTIA 230 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+V L NR + G+ +++ +PG+ L + + + D+G+ + P+LNAAG Sbjct: 231 DMVKLVDENRFMVKTGLEKLKRT-GKPGLSILFKRLGINEP--DSRDIGYRVAPKLNAAG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RLD LL+ + A L N L N TR+EIE + + A+ E+ +D + Sbjct: 288 RLDSADDAFELLISRDETSAEKLVNLLFEYNSTRQEIESEIFMRAVEQIEERGLHKDPI- 346 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + + WH GV+GI+A+R+ R+ +PV+ + + DG +GS RSI L++ + L+ L Sbjct: 347 --IVVKGDNWHVGVIGIVATRLVHRYGKPVMVISNS-DGIARGSARSIPNLNLIELLQPL 403 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + +FGGH +A G SL+ + F + + + + D L Sbjct: 404 SS----YFYEFGGHPLAVGFSLDSNNVDDFAELLRNF---EIPIEDVPDVLEIDEDLQLE 456 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ-QRLVGERHLKVMVEPVGGGPLLDGIA 534 ++ E + + P+G EP+F + + + G+ H V + G ++ I Sbjct: 457 QINEETLKDIGKLEPFGHGNNEPIFVARNVIAESIKFFGQNHANVKMNFTVNGAKIEAIG 516 Query: 535 FNVDTALWPD-NGVREVQLAYKLD 557 F +D A +V + + + Sbjct: 517 FGLDHAFDKSIYECNKVDIVFSIR 540 >UniRef50_B0CAF5 Single-stranded-DNA-specific exonuclease RecJ n=11 Tax=Cyanobacteria RepID=B0CAF5_ACAM1 Length = 795 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 178/599 (29%), Positives = 302/599 (50%), Gaps = 42/599 (7%) Query: 2 KQQIQLRRRE--VDETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQL 54 +Q+ Q+ E + + + L PLL + A++G+ S + ++ + P + Sbjct: 8 QQRWQIADPEHTLVDKIAIATGLSPLLAAVLANQGIGSVEAAQQFLAPESQSLPSPLEAF 67 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 + ++ +L +A +I + GD+DADG TSTAL + +R+LG +++DY +P+R ++G Sbjct: 68 PDLAASLTLLQDAIASRHKIAICGDYDADGMTSTALLLRVLRALG-ADVDYAIPSRMQEG 126 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG++ +V++ A L++TVDNGI+++ + AR LG+ VI+TDHH LP A AI Sbjct: 127 YGINQRIVEEFAADNVTLVLTVDNGIAAYDPIVRARELGLTVIITDHHDLPPQLPPANAI 186 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NP L + P + LAGVGVA+ L L + + LL+L LGT+ Sbjct: 187 LNPKLVPEDSPYRGLAGVGVAYVLATLLAQEQGNTTL----------ITPLLELFTLGTI 236 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVAN--RDAQKLAASDLGFALGPRLN 292 AD+ PL NR +G++ + + G+++L++V+ Q L +GF LGPR+N Sbjct: 237 ADLAPLVGVNRRWLQRGLALLPHSRL-AGVQSLMQVSGCVSADQALKPDAIGFRLGPRIN 295 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 A GR+ D + LL D+ G A A + + NQ R+++ ++IEA+ L E L R Sbjct: 296 AVGRIADPQTVIELLTTDDPGIAFARAMQCEQANQHRRQLCADIEIEAIELVETLVRQGK 355 Query: 353 TL-----PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG--TLKGSGRSIQG 405 + + HP WH GV+GI+ASR+ ER+ PV + ++GS R I Sbjct: 356 APWQPEGDWVIMLVHPGWHHGVIGIVASRLVERYGLPVFIATYEAEDHTHIRGSARGIPE 415 Query: 406 LHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGE 465 + AL+ D + ++GGH A G SL D+ + + + L L+ Sbjct: 416 FDVFAALQACDE----ALGRYGGHRAAGGFSLATDQLEKMRSHLRTYAHQTLQIDQLKPL 471 Query: 466 VVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGER--HLKVMV- 521 V D S ++ ++ + + P G PEP+F + +++QR VG+ HLK+ + Sbjct: 472 VTVDAQASFTQIDWDLYEQINQLHPCGIGNPEPIFWTANVEVVEQRPVGKDKSHLKLTLA 531 Query: 522 --EPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW-PI 577 E L+ G+A+ T + + +AY+L N + +L++ I I P+ Sbjct: 532 HTESDDRQQLIKGMAWRWGTYY---PLPQRIDVAYRLRENTWNQQTNLELEILGIREPV 587 >UniRef50_D1AWA1 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWA1_STRM9 Length = 883 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 173/584 (29%), Positives = 291/584 (49%), Gaps = 33/584 (5%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQEL----ERSVKGMLPWQQLSGVE 58 + I + DLP + L + ASRG+ +++ S++ + +L + Sbjct: 4 KWILSETKSKLTNFDLPIDNNIL--NILASRGIVDEKDIVNFINPSLENLEDPLKLKDLG 61 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 A + +A +E I + GD+D DG TST+L LA + +G NIDY +P R +GYGL+ Sbjct: 62 LAASYILDAIKEYKNICIYGDYDVDGITSTSLLYLAFKKIGAKNIDYYIPLR-NEGYGLN 120 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG--DTLPAAEAIIN 176 + + + +G LI+TVD GISS+ VE SL + I+TDHH LP A A IN Sbjct: 121 KDAIQEIKNKGTDLIITVDCGISSYHDVEFINSLDMKAIITDHHDIPSDKKLPRALACIN 180 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P D + ++AGVGVAF L L L + + LD+ +LGT+AD Sbjct: 181 PKRLDNEYSFPNIAGVGVAFLLAYELFRRLGIK----------EEIYSYLDIASLGTIAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 ++P+ NRI+ G+ +++ G++ +L N ++L D+ F + P NAAGR Sbjct: 231 IMPIIKENRIIVKYGLEKLKNS-SNLGLRTILNKLNLKDKELTTGDISFKIAPVFNAAGR 289 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L D +GV LL+ DN E +LA+ L + N RK+I+ + ++ ++L + Sbjct: 290 LADAKLGVKLLISDNQNEINILADNLISNNIYRKKIQDEI---ITSVLDELREKDISNKY 346 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERL 415 L + P +H G++GI+AS++ E +++P I +G S RS++G ++ AL + Sbjct: 347 ILISHSPNYHHGIIGIVASKVLETYYKPCIIMEENLEEGIAVASCRSVEGFNITKALSYV 406 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L ++KFGGHA AAG +++ + +F+++ E L+ L + D + Sbjct: 407 SNL----LIKFGGHANAAGFTIKLENIDIFKEKIEAYAKEQLENIKLTKNIKIDMKIPAQ 462 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLL-QQRLVG--ERHLKVMVEPVGGGPLLDG 532 +++ E Q L P+G P PL ++ + VG E+HLK ++ G + Sbjct: 463 KISYEFIQSLNLLKPFGFGNPTPLLMSENCIIHNPKTVGSNEQHLKFDIDQKGFSVK-NA 521 Query: 533 IAFNVDTALWPDNGVREV-QLAYKLDINEFRGNRSLQIIIDNIW 575 I FN + L + +KL+ NE++ I+I+++ Sbjct: 522 IWFNGGSNLQELRKNHIFYDVVFKLETNEYKDRFYPSIMIEDMK 565 >UniRef50_B1I335 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I335_DESAP Length = 857 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 189/584 (32%), Positives = 291/584 (49%), Gaps = 45/584 (7%) Query: 2 KQQIQLRRRE--VDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLP----WQQLS 55 ++ +L++ E + + L +L +RG+ + +E + G L L Sbjct: 4 HREWRLKKPEPVLSRMLARECGISELTAQLLVNRGIITVREARIFLDGDLDSLWSPYLLR 63 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 + V+ + A G +I+V GD+DADG T+ AL V A+R+L ++Y +P R DGY Sbjct: 64 DMAPTVDRIRGALAAGEKILVYGDYDADGMTAAALMVAALRTL-RGRVEYHIPWR-ADGY 121 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL+PEV+++A A G L++TVD G+S+ +E A++LG+ V+VTDHH P LP ++ Sbjct: 122 GLNPEVLERAAADGVGLVITVDCGVSARREIERAQALGLDVVVTDHHEPQGLLPP-VPVV 180 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP DCN+P K LAGVGVAF L AL + L L LGTVA Sbjct: 181 NPRRPDCNYPFKDLAGVGVAFKLAQAL--------------LGDELPPPFLGLACLGTVA 226 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 DV+PL NR+L G+ ++ PGI AL + D+ F + P LNAAG Sbjct: 227 DVMPLRGENRLLVRHGLPQLLD---NPGIAALGACQGENPV---VRDVAFGIAPLLNAAG 280 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ +GV +LL GEA LA +L ALN+ RK +E+ + L L +P Sbjct: 281 RIGRPELGVEILLAG-PGEAAALAAQLAALNEERKYLEEKVSAAVLAELSGLPE----VP 335 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + + +WH GV+GI+ASR+ R RPV A GD +GS R+ +G ++ +ALE Sbjct: 336 PVVVLAGEDWHPGVIGIVASRLAGRLGRPVALIAVDGD-EGRGSIRAGEGWNLVEALESC 394 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + + +FGGH AAG +L F++ P+ E+ + ++ Sbjct: 395 REV----LTRFGGHRCAAGFTLPTAAIPGFREAICRYARHLPVPA-SGPELEIEALVTLD 449 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVG--ERHLKVMVEPVGGGPLLDG 532 ++T EV + + PWG P+ R+++ VG HLK+++E G ++ G Sbjct: 450 QLTPEVLREIEALEPWGAQNDPPILAAEDLRVVKHYRVGREGEHLKLVLEQ--GRTIISG 507 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 I F + A R V LA+ IN + G + +I + + P Sbjct: 508 IGFGLAPAHPEIAECRRVHLAFVPVINRWNGRETPEIKVVDWKP 551 >UniRef50_D2LJ47 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJ47_RHOVA Length = 609 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 182/579 (31%), Positives = 285/579 (49%), Gaps = 19/579 (3%) Query: 8 RRREVDETADLPAELPPLLRRLYASRGV---RSAQELERSVKGMLP-WQQLSGVEKAVEI 63 + + LP ++ R+ A+RGV A L +++ + P + ++KA + Sbjct: 36 QDAHIAAAIAQRHNLPEIVGRILAARGVSLDEVADVLNPTLRALCPDPSTFTDMDKAADR 95 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 + A G RI + GD+D DGA+S+AL + G + +P+R +GYG + + Sbjct: 96 IARAIETGERIAIFGDYDVDGASSSALLKRFLAWHGL-DARIYIPDRITEGYGPNGPAIA 154 Query: 124 QAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 Q GAQLIVTVD G +S ++ A G+ V+V DHH + LP A A++NPN +DC Sbjct: 155 QLIEDGAQLIVTVDCGSTSFEALDVAAKRGVEVVVVDHHQVNEELPVAHAVVNPNRQDCL 214 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 L GV F L +A + LR +G + + P+L LD+VAL TV DVVPL Sbjct: 215 SGQGHLCAAGVTFLLCVAAQRRLRAKGAYAKS--PAPDLLGWLDIVALATVCDVVPLSGV 272 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NR QG+ +R + PG++AL + A + + LGF LGPR+NA GR+ D S+G Sbjct: 273 NRAFVVQGLKVLR-NRRNPGLRALADAAGVNKPP-SPYTLGFVLGPRINAGGRIGDASLG 330 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 LL ++ E R +A LD LN+ R+EIE EA ++ D + P Sbjct: 331 ARLLASEDDIETRRIAETLDRLNRERREIEIKTVEEAAAWADRT-LMEDPSAPIIIAGSP 389 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGM 422 WH+G+VG+ ASR+ ERF RP + F+ D G GS RS+ G+ + A+ + G+ Sbjct: 390 SWHKGLVGLAASRLTERFQRPCLIFSQDDDAGESTGSARSVSGVDIGAAVR--GAVEAGV 447 Query: 423 MLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVA 482 K GGH MAAG++++ + + + E+ DG L P T++ Sbjct: 448 AKKGGGHTMAAGITVDTARLHELAAFLRAALDPAYRVASAAPELAIDGVLKPRAATLDFC 507 Query: 483 QLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT-- 539 L AGP+GQ P P F R + + HL++ ++ V G + +AF Sbjct: 508 AQLEAAGPYGQGNPAPRFSLASVRPTMIKEISGGHLRLALQDVDGSQ-ISAVAFRAAQTE 566 Query: 540 --ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 A +A +++ +E+ G ++ I+++ P Sbjct: 567 IGAALAAGRDLACHVAGRIERDEWGGKSRIEFHIEDVAP 605 >UniRef50_Q049X0 Exonuclease RecJ n=22 Tax=Lactobacillus RepID=Q049X0_LACDB Length = 758 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 167/579 (28%), Positives = 289/579 (49%), Gaps = 40/579 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSG 56 MK Q + + +L PL +L++ RG+ + ++ L S + + Sbjct: 1 MKWQ-ERTAAPLASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMHD 59 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV + A EG +I + GD+DADG T+TA+ + +G +++ Y +P+RF+DGYG Sbjct: 60 MDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMG-ADVHYFIPDRFKDGYG 118 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 S + A G +LI+TVDNG + V +A+S G+ VIVTDHH + P A A+++ Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGATGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 N +P G GVA+ + A+ +E L+L +GT+ D Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE---------------DTASEFLELAMIGTIGD 223 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V + ++ +G+ + RPG++AL+ A + D+GF++ PRLNA GR Sbjct: 224 MVKVSGEGHVIVKRGLEMLNES-SRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGR 282 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L D S+ V LLL ++ GEA+ LA++++ LN RK++ Q A + ++ Sbjct: 283 LADASLAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQIKSRGYQKEAT-- 340 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 L +Y P WH+GV+G++A++I E++H+P + G +KGSGRS QG ++ +AL+ + Sbjct: 341 -LTLYDPAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKPFE 399 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 + +FGGH A GLS E+ ++ F + + + DG +SP + Sbjct: 400 ---GKSITQFGGHDFACGLSTTEENLNQLRRDFNQ--SYKAGEKAPEKVQEYDGTISPLD 454 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 + + L AGP+G P+P+F ++ R + + MV P + + F Sbjct: 455 VDLTSVYDLAQAGPFGTDNPQPVFLLDRPQISNFRPM-RKGCSFMVGP------VRAVDF 507 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + +++ + KL N F+G ++Q I ++ Sbjct: 508 DHGLNQTVLPYLQQ--MLVKLASNTFKGKTNVQFRIVDL 544 >UniRef50_Q03W56 Single-stranded DNA-specific exonuclease n=3 Tax=Leuconostoc RepID=Q03W56_LEUMM Length = 655 Score = 553 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 184/586 (31%), Positives = 301/586 (51%), Gaps = 36/586 (6%) Query: 1 MKQQ-IQLRRREVDET---ADLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQ 52 M Q + + ++ + + + A RG + L+ SV+ + Sbjct: 1 MNQNNWNILPQPSEKVVRQLSAQLNISQFMSTIVAQRGYTDPEAAFKYLQPSVEQLHDPM 60 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 L +++ +E L +A G +I+V GD+D DG TSTA+ V A+ LG +++ +PNRF Sbjct: 61 LLHDMDRTIERLQDAAFGGEKIVVYGDYDMDGVTSTAIMVEALEVLG-ADVTPYIPNRFS 119 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 DGYG + + + A GAQLIVTVDNG+S VE+A S GI VI+TDHH TLP A Sbjct: 120 DGYGPNIDTYKKLIADGAQLIVTVDNGVSGQEAVEYAMSQGIDVIITDHHEMPATLPNAY 179 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A+I+P +P L+G GVAF + AL ++G E +P ELLDLVALG Sbjct: 180 AVIHPRHPKGQYPFGDLSGAGVAFKVAQALL----NEGQPVEDQTELP--TELLDLVALG 233 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVAN-RDAQKLAASDLGFALGPRL 291 ++D+V L NR+L G+ +I RPG+ A+L+ A +D + + + + F + PRL Sbjct: 234 EISDMVSLTDENRVLVSWGLKQINVSP-RPGLTAVLKNAGKKDNEPVISETVSFKIAPRL 292 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NA GRL D S+ + LLL + E+ +A+E++A+N R+EI + + A + E Sbjct: 293 NAVGRLGDASLSLQLLLSQDPEESTAIASEVEAINAQRQEIVEEVFGSAKQMALSDEYKN 352 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 D + L + +WHQG++GI+ASR+ E +P I + DG KGSGR+ + Sbjct: 353 DQV---LVIAGQDWHQGILGIVASRLVELLQKPTIVLSLT-DGVYKGSGRTFGDFDLYQF 408 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 + LY FGGHA A GL++ ++ + +++ + + + + Sbjct: 409 MNTFHDLYDT----FGGHASALGLAISPEQLDVLKEQVRLNSAKL---QIHAKPISINTT 461 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGGGP 528 LS E++ E + LR P+G +P+F ++ + +G ++H+K+ +E Sbjct: 462 LSVNEISTETYEELRLLEPFGTGNQQPVFGLQQPKINKVTTMGNLKQHIKLALENN---- 517 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 ++ + FN + + A L IN FRG +++Q+++ I Sbjct: 518 -VEAVGFNHPDWVPMVANPLGISFAATLGINYFRGRKTIQLLLTAI 562 >UniRef50_Q1PZA9 Similar to exonuclease RecJ n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZA9_9BACT Length = 577 Score = 553 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 175/584 (29%), Positives = 280/584 (47%), Gaps = 20/584 (3%) Query: 1 MKQQIQLRRREVDETADLPAE--LPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 M ++ + ++ ++ + LL ++ +RG+ + ++ + L Sbjct: 1 MSKRWFIAPNNIELQTEIAGNLRISNLLAQILINRGITDVGAAKGFLQPQISTLSDPSNL 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +EKA + A R G +I++ GD+D DG T+TAL ++ + ++Y +P R E+G Sbjct: 61 PDIEKASVRINEAIRNGEKIVIYGDYDVDGLTATALMYRCLKMFD-ARVNYYIPERLEEG 119 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YGL+ E + + A G LI+TVD GIS+ E ARS GI +I+TDHH P +P A AI Sbjct: 120 YGLNAEAIAKLKAGGTDLILTVDCGISACREAEIARSYGIELIITDHHQPSQEIPDAFAI 179 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 INP L+ + +GVG+AF L ++ Q N L + LVALGT+ Sbjct: 180 INPKLKATEKTFRDFSGVGIAFMLAWSVGQHYFPQ--KKVSNEFKDFLISAMGLVALGTI 237 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 ADVVPL NRILT G+ ++ K PG++ALLEV++ L S +G+ LGPR+NA Sbjct: 238 ADVVPLVGENRILTKYGLGALQQTKI-PGLQALLEVSSLTNINLDTSHVGYRLGPRINAP 296 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ D V V +L +A+ +A L+ N R+ ++ + A ++ Sbjct: 297 GRVSDAGVVVEMLTTACNEKAKEIALFLEEENNRRRAMQLDILSAARQKI--VDEINLDE 354 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 + + EWH G+VGI+AS+I E F+RP + A A + GS RSI HM DALE Sbjct: 355 TLAIVLADQEWHPGIVGIIASKIAEEFNRPAVMIAVADE-IGHGSARSIPSFHMLDALEC 413 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 M++ GGHA AAGL + D F+ ++ + L L + D + Sbjct: 414 CK----NMLISVGGHAQAAGLKIHPDNIGDFRTLLNRMMAQKLQKEDLVPFLNIDVAVDL 469 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLL-QQRLVGERHLKVMVEPVGGGPLLDG 532 + + + L+ P G+ P+F ++ + R +G + G + Sbjct: 470 STLNRGLLMELQLLSPHGEGNHIPVFAIKDLQIAGKPRRIGSNGQHLSFYVKQGNVSMKA 529 Query: 533 IAFNVDTALWP-DNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 I F + + LA L N + N S+++ + +I Sbjct: 530 IGFGMGDEIDRLLKNGSTCSLAVVLKENNWMNNSSIELEVKDIK 573 >UniRef50_C4FWR9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FWR9_9FIRM Length = 777 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 170/585 (29%), Positives = 277/585 (47%), Gaps = 38/585 (6%) Query: 2 KQQIQLR------RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM----LPW 51 + Q R + +V E RL +RG+ + +E++ + M Sbjct: 5 HYEWQYRSLPDDWQDKVAEWQQAGLGYSDTFLRLCLARGLETLEEIKNATNQMPQTFHDA 64 Query: 52 QQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRF 111 L +E+AVE + A + I++ GD+DADG TST + + LG + + Y VPNR Sbjct: 65 FLLYDMERAVERIQAAIEDQEVILIYGDYDADGITSTLILYETLEMLG-ARVIYYVPNRL 123 Query: 112 EDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAA 171 DGYG + +G QLI+T DNG++ ++ A G+ VIVTDHH TLP+A Sbjct: 124 VDGYGPNLARYQDFVNQGVQLILTCDNGVAGFEAIKWAMQAGVDVIVTDHHEVQATLPSA 183 Query: 172 EAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 A+++P ++P L+G GVA L AL + EL++L A+ Sbjct: 184 YAVVHPRHPQGHYPFPDLSGAGVALKLATALLGEVPT---------------ELVELAAI 228 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRL 291 GTV+DVV L NR + G+ +R R G++ +LE D + + A +GF +GPRL Sbjct: 229 GTVSDVVSLRDENRTIVLSGLQLMRDT-MRIGLRLMLEEEQVDMENMTADTIGFTIGPRL 287 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NA GRL D + + LL + EA+ L ++ NQ RK++ + + + Sbjct: 288 NAIGRLGDPTPALELLKTQDEEEAQELLALINEKNQERKDLVAKIMDQVSQRL-----GQ 342 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRD 410 +P + P W GVVGI+A R+ E + RP + F A +G KGSGRS + +H+ D Sbjct: 343 GPIPHIIIESDPSWPAGVVGIVAGRLSEHYQRPALIFQYQADEGQYKGSGRSTEAVHLFD 402 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 L + + +FGGHA AAG+++ +D+++ F D + + D Sbjct: 403 WLTDIKE----HLAQFGGHAQAAGMTVAQDQWQEFVSALQAKAQVQTDIGTRKAPLTIDL 458 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPL 529 L E+ + Q ++ GP+G +P+F ++ Q RL+G + G Sbjct: 459 SLKLGEVGTDFIQEVQLLGPFGMDNDKPVFAIEEAKINQMRLIGTNGQHAKLVLGQDGQE 518 Query: 530 LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 L+ I F+ + + LD+N+++ S Q+++ +I Sbjct: 519 LNAIGFDFADRMRDRQVGDSLTAVGHLDLNKWQNRISPQLLLSDI 563 >UniRef50_C5NYP0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYP0_9BACL Length = 753 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 176/563 (31%), Positives = 281/563 (49%), Gaps = 36/563 (6%) Query: 19 PAELPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSGVEKAVEILYNAFREGTRI 74 + + ++ +R + +++ + ++KAV+ + A +I Sbjct: 22 SYSISKNIAKILNARNITDMTSVKKYFSDEYEEGYDPFLMHDMQKAVDRINEAIENEEKI 81 Query: 75 IVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV 134 +V GD+DADG TST L V + S+G +N+ +PNRFE+GYG + E + G LI+ Sbjct: 82 LVYGDYDADGITSTVLLVETLISMG-ANVSSYIPNRFEEGYGPNKEAFTKIIDSGITLII 140 Query: 135 TVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGV 194 TVDNGI+ V+ A LG VIVTDHH DT+P A AII+P + N+P K LAGVGV Sbjct: 141 TVDNGIAGVEEVDLANELGCDVIVTDHHKIQDTIPNAYAIIHPEHPEGNYPFKKLAGVGV 200 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 AF L AL D LLDLVA+GT+AD+V + NRI QG+ Sbjct: 201 AFKLAHALLEIFPD---------------FLLDLVAIGTIADMVSITDENRIFVKQGLEL 245 Query: 255 IRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 I R G+K LLE++ D + + +GF + P+LN+ GR+D +G+ L+ + Sbjct: 246 INEDP-RIGLKMLLELSGIDTK-IDEQTVGFYIAPKLNSIGRMDSAKLGLTFLMAEEPVT 303 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILA 374 AR LA +++ N RK++ + + + ++ E E+ + + M E+H+GV+GI+A Sbjct: 304 ARALAEQIEQYNIQRKQVTEDIVKDVISKIENSEKKQKNV----IMVSGEYHEGVLGIVA 359 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 S I E++ +PV +G LKGS RSI ++ A+ ++ L+ L FGGH +AAG Sbjct: 360 SNIVEKYQKPVFIM-NEKEGVLKGSARSIFDFNIYVAMNKISDLF----LAFGGHTLAAG 414 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 S E+ F+ ++ E+ + L+ D S +++ + L P+G Sbjct: 415 FSFEKSNFEKIEEFLDNEFEEFKQNNNLKANKNIDIVTSLEDISYQFLNSLDALKPYGMD 474 Query: 495 FPEP-LFDGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQ 551 F +P + + +L + G +++L++ + G LD I F + Sbjct: 475 FEKPTVLIENAMVLNKAYFGSEKQYLRLTIADEVGN--LDCITFKDSVTFDKVEKNDIID 532 Query: 552 LAYKLDINEFRGNRSLQIIIDNI 574 L +D N F G LQ I +I Sbjct: 533 LVCNIDKNNFNGRTKLQAHIIDI 555 >UniRef50_A6LJS2 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LJS2_THEM4 Length = 977 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 170/571 (29%), Positives = 289/571 (50%), Gaps = 37/571 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 MK +++ +E E ++P L +L SRG + + R + + L Sbjct: 1 MKWELKKIDKESSEKLAEELDIPLLTAQLLVSRGYVTPESAYRFINPSKNDLRSPFLLKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++AV+ L A + I+V GD+D DG T A V + G + Y +PNR + GYG Sbjct: 61 MDRAVKYLLLARNKKYPILVYGDYDVDGITGVATLVTFLSKHGW-KVKYFIPNRLDVGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + PE+VD+ +G +L+++VD GI+S V+HAR LG+ V++TDHH +P A A+++ Sbjct: 120 IQPEIVDEYFKKGYRLLLSVDCGITSFDAVKHARELGMYVVITDHHTIKSGIPNAHAVVD 179 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P D +P K AGVGVA+ L+ AL L + + ELLD+VALGT+AD Sbjct: 180 PKREDETYPFKDFAGVGVAYKLISALALEL---------GLPDDEVNELLDIVALGTIAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V L NR + +G+ ++ + R G+ L++ + + + + D+G+ L P+LNAAGR Sbjct: 231 MVDLVDENRYIVKEGLKKLNQTQ-RVGLVQLMK--KLNIKNITSQDIGYRLAPKLNAAGR 287 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L L+ +N+ A LA L N TR+EIE + EA+ EK S+ Sbjct: 288 LYSAEDAYKLITTNNLSSAEQLAEILMGYNFTRQEIENKIFNEAVYKIEK---SKIKDLP 344 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 L + +WH GV+GI+A+++ +++++P + + DG +GSGRS+ G+++ D L Sbjct: 345 ILIVSGEKWHAGVLGIVATKLVQKYNKPSLVIS-LEDGMGRGSGRSVDGVNIFDVLSSFS 403 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPS-LLQGEVVSDGPLSPA 475 + + GGH MA G S+ E+K + E++D + ++ D L Sbjct: 404 RYFEEI----GGHPMAVGFSIREEKIDELIDVISK---EFVDSHFEVDSKIEIDTVLDID 456 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLL-QQRLVGE--RHLKVMVEPVGGGPLLDG 532 E+ EV L P+G PEP+F L+ + R G +++++++ +++G Sbjct: 457 EVNDEVINSLSYLEPFGHGNPEPVFLIKNSLVDRIRFFGNVVSNVRMVLKG-KNKNVIEG 515 Query: 533 IAFNVDTALWPDNGVREV----QLAYKLDIN 559 I F + + + V + + N Sbjct: 516 IGFGLRKNYYDIPAIHAVLTSLDIVANIRQN 546 >UniRef50_C7NEA4 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Fusobacteriaceae RepID=C7NEA4_LEPBD Length = 997 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 171/577 (29%), Positives = 290/577 (50%), Gaps = 34/577 (5%) Query: 14 ETADLPAELPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSGVEKAVEILYNAFR 69 E +L + + + ++ SRG+ + +E+ + L L +EK V + A + Sbjct: 47 ENTNLSSVIDNDILKILYSRGITTEKEIREFLNPKLGNIQNPYGLQDMEKTVLEIEKAIK 106 Query: 70 EGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARG 129 E I + GD+D DG TST++ +A++ LG N++Y +P R ++GYGL+ E + + G Sbjct: 107 EQKNIWIYGDYDVDGITSTSILYMALKELGAENVNYYIPIR-DEGYGLNNEALKKIKKSG 165 Query: 130 AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH-LPGDTLPAAEAIINPNLRDCNFPSKS 188 A L++TVD GI++ VE A S+ +P+I+TDHH L GD +P A ++NP + +F + Sbjct: 166 ADLVITVDCGITAFPEVEFANSINLPIIITDHHNLHGDKVPDAITVVNPKRPENDFSFEF 225 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 LAGVG F ++L L + + + LDLVA+GTVAD+VPL NRILT Sbjct: 226 LAGVGTIFMVILCLYERIGKKA----------KAYKYLDLVAIGTVADIVPLMEENRILT 275 Query: 249 WQGMSRIRAGKCRPGIK----ALLEVANRDAQK---LAASDLGFALGPRLNAAGRLDDMS 301 G+ ++ K + G++ L + N D + + D+GF + P NAAGRL D Sbjct: 276 KFGLEQLSRSKNK-GLRFLLYKLFSIQNSDFNEKTEYNSYDVGFIIAPVFNAAGRLKDAK 334 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 + V LL+ DN E ++ EL N RKE++ + + E+ + D + Y Sbjct: 335 MVVKLLISDNDREIEIIVKELINKNFERKELQNEIVEKVEKHIEESDLKED---YVIVDY 391 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAF-APAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 PE+H GV+GI AS+I +++++P I +G GS RSI ++ +AL+ + P Sbjct: 392 SPEYHHGVIGIAASKIVDKYYKPAIIIEVKEDEGIAVGSCRSIGNFNILEALQSM----P 447 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 + +KFGGH+ AAG ++ +LF+++ + L + D + +++ E Sbjct: 448 ELFVKFGGHSGAAGFTIGIKNLELFKKKINKFAKTKLKEEDFVKIIEIDKQIPIQKISYE 507 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQ-QRLVGERHLKVMVEPVGGGPL-LDGIAFNVD 538 Q++ P+G P P F + L + + +GE +M + G + + FN Sbjct: 508 FFQIIELLKPFGFGNPMPTFRTNNVLFENIKFIGENKNHIMFDIKQKGFFNRNAVWFNSG 567 Query: 539 TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 N + YKL F+ ++ I+++ Sbjct: 568 EYFKELNENLFYDIVYKLKTEMFQDRYYTKVYIEDVK 604 >UniRef50_C5RPJ0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Clostridium cellulovorans 743B RepID=C5RPJ0_CLOCL Length = 589 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 167/593 (28%), Positives = 290/593 (48%), Gaps = 59/593 (9%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 + P++ +L RG+R E+E+ +KG M + ++ A I+ A E +I++ Sbjct: 14 ISPIIAKLLWDRGIRDKDEVEKFLKGSIDEMYDPFLMKDMDLATSIIIKAIFEEKKIVIY 73 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG TST + A++ +G + + Y +P+R ++GYGL+ + ++ +G +I+TVD Sbjct: 74 GDYDVDGVTSTVIMFKALKRVG-ARVTYHIPDREKEGYGLNKKSIEVLREQGNSVIITVD 132 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPG----------DTLPAAEAIINPNLRDCNFPSK 187 NGI++ V++A+ +G V++TDHH + LP A+AIINP DCN+P K Sbjct: 133 NGIAAVEEVKYAKEIGFQVVITDHHDLPFEENEKGERKEILPNADAIINPKRSDCNYPFK 192 Query: 188 SLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRIL 247 L G +AF +AL + + E L + TV DVV L NR++ Sbjct: 193 YLCGASIAFKFAVAL--------FIKRKIDYKEAYNEYLQFAGIATVCDVVDLIDENRVI 244 Query: 248 TWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALL 307 + I K GI +L + ++++ +GF +GP +NA GRL++ + V LL Sbjct: 245 LKNALKSINNSK-NIGINSLRKFTLSLDKEISVYAIGFVMGPCINATGRLENAKMAVELL 303 Query: 308 LCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQ 367 L + A LA EL LN+TR+++ + + E + D + L +Y P H+ Sbjct: 304 LTKELEIAENLAKELVDLNKTRQDMTTEGVEKVVKEIELGDYYNDKV---LVVYEPTIHE 360 Query: 368 GVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 + GI+A RI+E++++P I A +G +KGS RSI+ ++ + L + L + KFG Sbjct: 361 SIAGIIAGRIREKYNKPTIILTKAVEG-VKGSARSIEEYNIYEELLKCKNL----LDKFG 415 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRD 487 GH MAAG+SL+E+ + ++ L + +VV D PLS ++ + + + Sbjct: 416 GHPMAAGMSLKEENIEPLRETLNGKC--ILTDEDMIPKVVIDFPLSSHKIDDSIIYDIGE 473 Query: 488 AGPWGQMFPEPLFDGHFRLLQQRLV-GERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNG 546 P+G+ PLF LL++ +V G + + + G +D +AF L Sbjct: 474 LAPFGKGNSTPLFGDKNLLLEKAMVFGSDNGVLKLVFNVQGRRIDAVAFKKYLELMEIIE 533 Query: 547 VR------------------------EVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + Y + NE++GN+ +Q+ + + Sbjct: 534 ENWVNDNYGELLPYSTGYLINIPQDLRLDIIYTPEFNEYKGNKKIQLKVHELR 586 >UniRef50_B2ULA8 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2ULA8_AKKM8 Length = 579 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 179/556 (32%), Positives = 266/556 (47%), Gaps = 38/556 (6%) Query: 34 GVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVL 93 G+ + L+ + + + + AV+ ++ A EG + + GD+D DG TS AL Sbjct: 43 GMETELFLDPRLSHLSDPFLMGEMRAAVDRIFRAVDEGETVCIYGDYDVDGVTSVALLRA 102 Query: 94 AMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH---ARGAQLIVTVDNGISSHAGVEHAR 150 + + Y +P R +GYGLS + + A L++TVD G SS V+ Sbjct: 103 ILMAYDLDP-QYFIPVRSREGYGLSEAGIKRCLCECADPPSLLITVDCGTSSVKEVDMLN 161 Query: 151 SLGIPVIVTDHHLPGD-TLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQ 209 SLGI VI+ DHH G P A A++N + + N P L GV F L AL Sbjct: 162 SLGIDVIILDHHEAGPLGRPDAAAVVNAKIEE-NSPYTYLCSAGVVFKLAHALLK----- 215 Query: 210 GWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLE 269 ER + +L LDLVA+ TVAD+VPL A NRIL G+ R+ + G+K L E Sbjct: 216 ----ERKLKTFDLKLYLDLVAVATVADIVPLVAENRILVRHGLGRLAHSR-HTGLKTLTE 270 Query: 270 VANRDAQK-------LAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 322 +A L A+ +GF +GPR+NAAGR+D + LLL + A LA L Sbjct: 271 IAGIRPSDSVNHAGFLNAAHVGFRIGPRINAAGRMDSPMDALELLLTMDARRAVQLAQML 330 Query: 323 DALNQTRKEIEQGMQIEALTLC-EKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 381 D+ N+ R+E E+ ++ +A+ + + RD + + + WH GVVGI+AS++ R+ Sbjct: 331 DSHNRKRQEEEEAIRTDAVEMLHNSFDPERDNV---IVLGSRAWHPGVVGIVASQLMRRY 387 Query: 382 HRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDK 441 H+P A G KGSGRSI G+ + A+ ++ GGH MAAGL +EE + Sbjct: 388 HKPTFVIAFDESGVGKGSGRSIPGVSLVQAIHHCADT----LVSGGGHDMAAGLVIEESR 443 Query: 442 FKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD 501 F++ F V+E + D +S +T+++ P+G P+PLF Sbjct: 444 MDDFRRAFNRYVSETTTEEQRSPVLNIDMEVSFQALTLDLLDSYEKLEPFGNSNPQPLFM 503 Query: 502 GH--FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDIN 559 F + VG HLK+ + G D I FN P+ +A+ +D N Sbjct: 504 SSDVFPTEPPKRVGTNHLKLFMRQ--GIVERDAIFFNGAERELPNP---PWDIAFTIDRN 558 Query: 560 EFRGNRSLQIIIDNIW 575 +RG SL I I I Sbjct: 559 VYRGRASLSISIQEIR 574 >UniRef50_A3DBX0 Single-stranded-DNA-specific exonuclease RecJ n=4 Tax=Clostridium thermocellum RepID=A3DBX0_CLOTH Length = 763 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 169/584 (28%), Positives = 301/584 (51%), Gaps = 41/584 (7%) Query: 1 MKQQIQLRRREVDETADLPAEL------PPLLRRLYASRGVRSAQELERSVKGML----P 50 MK ++ + +++ +P E+ L+ R++ +RG ++ + + + + L Sbjct: 1 MKVRVNI----LNKGVSIPQEVLDACGGDELVARIFYNRGYKNPETIRQMLNPELYVPTK 56 Query: 51 WQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNR 110 + + +AV+ + A +I V GD+D DG TST V + S + Y VP+R Sbjct: 57 PDEFPDMPRAVDRILRAADNEEKICVYGDYDVDGVTSTVTLVECLNFF-TSKVVYHVPDR 115 Query: 111 FEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA 170 F +GYG++ E+V + G LI+T D GIS+ + A+ LG+ V++TDHH D LP Sbjct: 116 FTEGYGMNEEIVRKLAQDGVSLIITCDCGISNVREITLAKELGMDVVLTDHHTVPDELPP 175 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A+AI+NP L + +++++G G+ ++L LAL L +G+ D LD++A Sbjct: 176 ADAILNPKLLEEGHRARNISGCGMVYFLCLAL---LEKKGFPDRAER-------FLDMLA 225 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPR 290 L +ADVV L+ NR L + + + + R G++ LLEVA R+ + D+ F + PR Sbjct: 226 LSLIADVVSLNGENRYLLQKALPALFNTR-RIGLRQLLEVAERNGKLENEEDVAFQIAPR 284 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NAAGR+D + V L LC ++ +AR++A ++D+LN RK ++Q + EA+ + E +++ Sbjct: 285 INAAGRMDTARLPVELFLCQDLEKARIMAEKIDSLNTERKRVQQSIVDEAVEMVETRKKN 344 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMR 409 + L +Y WH G++GI A RI E + +P I F+ DG GS RSI+ +++ Sbjct: 345 K----TILVLYKEYWHHGIIGIAAGRICELYRKPAILFSLKEDGITAVGSARSIEEVNIY 400 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 + ++ G +LKFGGH+ AAGLS+ +D + F + + V +D Sbjct: 401 ELIKECS----GKLLKFGGHSQAAGLSIRKDDIEEFISQIEMEAENRYFIKDMVN-VNAD 455 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPL 529 L ++ E+ ++ AGP+G+ F P F ++ + E+ +MV G Sbjct: 456 MELGIEDINEELYDRIQSAGPYGEGFEAPCFCIRNVIVLSDRMTEKKHHIMVLEDQKGNR 515 Query: 530 LDGI-AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIID 572 + + F D + R + ++ N + + +Q+ ++ Sbjct: 516 IPAVKWFGEDESFE----GRCFDVTCRIGRNNYSKDAGIQLTLE 555 >UniRef50_B0MLV1 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MLV1_9FIRM Length = 672 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 167/578 (28%), Positives = 283/578 (48%), Gaps = 29/578 (5%) Query: 3 QQIQLRRREVDETADLPAE--LPPLLRRLYASRGVRSAQELERSVKG--MLPWQQLSGVE 58 ++ +R + L + LP LL L SRG+ +A++ ++ G + ++ ++ Sbjct: 2 KKWLVRNTDNALAMKLKTDTGLPMLLCSLLVSRGIYTAEQAQQYFNGTELSDPLLIADMD 61 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 KAV+ + A +I V GD+D DG TST + + ++G +++++ +P R E+GYGL+ Sbjct: 62 KAVQAIEEAVDNEVKITVYGDYDCDGVTSTVMLFTHLDAIG-ADVNWYIPTR-EEGYGLN 119 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 + + H G LI+TVDNG+S+ E LG+ ++VTDHH + LP AEAI+NP+ Sbjct: 120 ENAIRKLHEDGTGLIITVDNGVSAVNEAELIYELGMKLVVTDHHQLPEILPKAEAIVNPH 179 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 +D N P K LAG GVA L++AL + L + DL A+GT+ DVV Sbjct: 180 RQDDNSPYKELAGCGVALKLIMALERDVEGV------------LEQYADLAAIGTIGDVV 227 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 L NRI+ +G+ ++ + G++AL+ A DA+ + ++ + F L PR+NAAGR D Sbjct: 228 ALTGENRIIVKRGLLEMQYSE-NQGLQALINAAGLDAESITSTGIAFGLCPRINAAGRYD 286 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 LL+ A + A EL+ LN RK+IE + A + + L Sbjct: 287 SPKAAAELLMAQTGQIAEIKAQELNELNAKRKQIESDILEMAKAQL--IADPKAFNSRVL 344 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + W+ G++GI+++R+ E + +P I GD +GS RSI+G + AL+ Sbjct: 345 IVCGEGWNHGIIGIVSARLLELYEKPCIVIGIEGD-EARGSARSIEGFSLYTALDACSE- 402 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 + +FGGH AAG SL +DK F + E PS+ +D +++ Sbjct: 403 ---HLTRFGGHTKAAGFSLPKDKVDDFIAQLRSYADEKF-PSMPVMTTEADIEPELSDLE 458 Query: 479 MEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 + + LR P+G+ PLF + ++ R + + G + F Sbjct: 459 ISSIENLRHLQPYGEENNAPLFLMRNCTIISSRPLKDGKY-TSFSAEYKGSQFKFLCFGT 517 Query: 538 DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + +V + ++INE+ +S+ + + +I Sbjct: 518 SFDKFGYYPGDKVDVLSHIEINEYNDKKSVSVRVKDIR 555 >UniRef50_C6NXH8 Single-stranded-DNA-specific exonuclease recJ n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NXH8_9GAMM Length = 539 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 204/527 (38%), Positives = 304/527 (57%), Gaps = 20/527 (3%) Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++AV + A R ++VGD+D DGA ++A+ ++ G + +VPNRF +GYG Sbjct: 1 MKEAVAWIAYAVRHQWPTVIVGDYDVDGACASAILRGSLS--GLLPVTSIVPNRFTEGYG 58 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+P +VD+ +L++TVDNG+S+HAGV A+ G+ V+VTDHHLPG P A+ I+N Sbjct: 59 LTPAIVDRIAPE-TKLVITVDNGVSAHAGVAAAKQRGMTVLVTDHHLPGPLRPPADVIVN 117 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 PN C FP KS G VA+YL+LAL I + +DLVAL TVAD Sbjct: 118 PNQPGCPFPWKSTCGTAVAWYLVLALHQT-------HPHWIGREQVESQIDLVALATVAD 170 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V L+ NNR+L G+ RIR GK PG+ + +A + + D F +GPRLNAAGR Sbjct: 171 LVKLERNNRVLVANGLRRIREGKINPGLSGIATMAQIELSTIREQDFAFKIGPRLNAAGR 230 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L DM G+ LLL + + + L+ +N RKE++ ++ EA+ + + S D Sbjct: 231 LADMQTGIHLLLSRDAEQVERWSRFLETVNAQRKEVQAQIEQEAVEIVNGMSDSGD---P 287 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG-TLKGSGRSIQGLHMRDALERL 415 L + WH GVVGI+A ++KERF RP G+G +GSGRS+ G H+RDAL RL Sbjct: 288 VLCVGSDHWHSGVVGIVAGKLKERFERPAFVLTATGEGDLAQGSGRSLDGWHLRDALARL 347 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 DT +PG++ ++GGHAMAAGLS+ + +F F+ ++ E + L +V DGPLS A Sbjct: 348 DTEHPGILQRYGGHAMAAGLSIPKSRFDAFRAGINGVLLEQVPTGALHRQVHCDGPLSAA 407 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGG----PLLD 531 E T+E+A+ + AGPWGQ FPEPLF+ F + R + H K+ + L++ Sbjct: 408 ECTLEMARAIEAAGPWGQGFPEPLFENTFVVESARTMKGGHWKLHLRLEDSSSVPTNLVE 467 Query: 532 GIAFNVDTALWPDNGVR--EVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + F + P+ ++ Y+L +N ++G +LQ+ I + +P Sbjct: 468 AVHFLDGKEVAPEPPPSGLRIRAQYRLQVNRWQGREALQLQIHSAYP 514 >UniRef50_B0P091 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B0P091_9CLOT Length = 576 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 179/594 (30%), Positives = 302/594 (50%), Gaps = 38/594 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSG 56 M+Q +++ + P++ RL +R V +++++ + + + G Sbjct: 2 MEQWYLYKKKANFNQIGEKFNIDPVIARLIRNRDVVGDEQIQQYLYGELSDISDPFLMKG 61 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 V++ VEIL +EG I ++ D+D DG S + A+ LG ID+ +P+R +DGYG Sbjct: 62 VKEGVEILKQKVQEGKTIRIISDYDVDGVVSNYILWKAIHDLG-GKIDFQIPDRMKDGYG 120 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG----------D 166 ++ ++++A I+T DNGI++ V + + G+ +I+TDHH + Sbjct: 121 INENIIEKAVEDQIDTILTCDNGIAAADAVAYGKEHGLTMIITDHHDVPFDTDEAGMRKE 180 Query: 167 TLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL 226 LP A+ +INP CN+P L G GVAF M A + + L ELL Sbjct: 181 VLPPADVVINPKQEACNYPYPLLCGAGVAFQFMRAFYQAMEED---------ESQLEELL 231 Query: 227 DLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFA 286 ++A+ TV DVV L NRI +G+ RI+ + G+KALL V + +++ + LGF Sbjct: 232 SMLAIATVCDVVDLTGENRIFVKEGLRRIKDTQ-NIGLKALLNVHDLMDKQIQSYALGFI 290 Query: 287 LGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK 346 +GP +NA+GRL+ + L L ++ +A+ A EL LN RK + + EAL + Sbjct: 291 VGPCINASGRLESAEKALNLFLEEDEEKAKQTAEELKELNDLRKTMTENGVKEALGQAFE 350 Query: 347 LERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGL 406 E D + L +Y PE H+ + GI+A RIK+R + P A +G +KGSGRSI+G Sbjct: 351 YEAKGDKV---LVLYLPECHESIAGIIAGRIKDRLNHPAFVLTDAKEG-IKGSGRSIEGY 406 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 M + + ++ ++ KFGGH MAAG SLE++K + F+++ E T L+ +V Sbjct: 407 SMFEEMMKVKEVF----TKFGGHPMAAGCSLEKEKLQEFRKKINENCT--LEKKDFAKKV 460 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGE-RHLKVMVEPV 524 D + +TM++ L P+G+ +PLF ++ + + G+ +++ + Sbjct: 461 QIDIDMPVDYITMDLIHQLSVLEPFGKENKKPLFAHRKLKVERVNVFGKNKNVIKLALKS 520 Query: 525 GGGPLLDGIAFNVDTALWPDNGV-REVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 G +DG+ F + G + + Y INE++G +SLQI I N + + Sbjct: 521 SQGTRIDGMIFEDEDEFREKMGTSKYITCTYYPVINEYQGYKSLQINIQNYFFV 574 >UniRef50_Q2JN66 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Synechococcus RepID=Q2JN66_SYNJB Length = 890 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 172/525 (32%), Positives = 277/525 (52%), Gaps = 31/525 (5%) Query: 13 DETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQ-LSGVEKAVEILYNA 67 ++ + P+L ++ +RG+ S +++ ++ + P + + + AV++L A Sbjct: 19 AQSLAEAVGISPILAQILLNRGLSSPAAVQQYLQPDPAHLPPPSRDFADLPLAVDLLDGA 78 Query: 68 FREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHA 127 R I + GD+DADG TSTAL +R+L + + Y +P+R +GYGL+ +V + H Sbjct: 79 IRRQEPIAICGDYDADGMTSTALL---LRALQDAPVHYRIPSRMTEGYGLNSRMVQELHR 135 Query: 128 RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSK 187 G +LI+TVDNGIS+H ++ A++LG+ VIVTDHH LP A+AI+NP + P + Sbjct: 136 EGVRLILTVDNGISAHEPIQLAKALGLTVIVTDHHDLPPQLPPADAILNPKQLPVSSPYR 195 Query: 188 SLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRIL 247 +AGVGVA+ L AL D L+L +GT+AD+ PL NR+ Sbjct: 196 GMAGVGVAYLLAQALAERRGDGHLQRVA----------LELFTVGTIADLAPLTGVNRLW 245 Query: 248 TWQGMSRIRAGKCRPGIKALLEVANRDA--QKLAASDLGFALGPRLNAAGRLDDMSVGVA 305 QG+ + + GI+ALL+V + L +GF LGPR+NA GR+ +G+ Sbjct: 246 VRQGLHLLPTSQV-AGIRALLQVMGMQGSLEGLRPEWIGFGLGPRINAVGRIGRARMGIQ 304 Query: 306 LLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE- 364 LL D+ +A LA + LNQ R+++ ++ EAL + R + P+ Sbjct: 305 LLTTDDPLQAEKLARRCERLNQVRQQMCGRIEAEALEQIAQQGRDLQQERVLTILGSPQR 364 Query: 365 -WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGR-SIQGLHMRDALERLDTLYPGM 422 WH+GV+GI+ASR+ ERF PV + + G + GS R I + ALE L+ Sbjct: 365 RWHKGVIGIVASRLAERFGCPVFIGSQSRQGEISGSARQGIPEFDVFQALEFCKDLF--- 421 Query: 423 MLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVA 482 K GGH A G SL + + F++R + + L P +Q V D +S +++T+++ Sbjct: 422 -TKHGGHPAAGGFSLRAEDWPFFEERLRQFAQQQLQPEQIQPLVQIDAEVSLSDLTLDLY 480 Query: 483 QLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPV 524 + L+ P G PEP+F + ++LQQ+ G HLK+++ Sbjct: 481 RELQHLQPCGIGNPEPVFYSRNLQVLQQQRFGPVPGHLKLLLRDP 525 >UniRef50_C8WZW9 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Desulfovibrionales RepID=C8WZW9_DESRD Length = 577 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 198/585 (33%), Positives = 308/585 (52%), Gaps = 35/585 (5%) Query: 3 QQIQLRRREVDETADLPA-----ELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQ 53 Q I + ++TA+ E+ P L L RG+ S QE++ + + P Sbjct: 5 QWIFREQPASEKTAEFSTWAKQLEISPFLCDLLWQRGLSSPQEMDVFLSPGLRHLAPPHT 64 Query: 54 LSGVEKAVEILYNAFREGT-RIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 SG+ +A +L A + T + V GD+D DG T+TAL +R G + + +PNR E Sbjct: 65 WSGLNEAAAVLAAALEQDTGPLAVWGDYDVDGITATALVTEILRGRGYA-VLPHLPNRME 123 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 DGYGL+ ++ + +G + ++TVD G+ + A+ LG+ V+V+DHH P TLP A+ Sbjct: 124 DGYGLNTAGIEALYDQGVRALLTVDCGMGDLEAITRAKELGMRVVVSDHHQPHATLPPAD 183 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 AI+NP + C P LAGVG AF+LM AL L +L LDLVALG Sbjct: 184 AIVNPCVDAC--PCPELAGVGTAFFLMAALNRLLPG---------TPSDLRPSLDLVALG 232 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ-KLAASDLGFALGPRL 291 T+ADVV L NRI+ G+ + G RPGI AL E + + + A + F L PR+ Sbjct: 233 TIADVVSLRGQNRIVAKNGLLLLSEG-SRPGIYALKEASRLPGKAPIGAGQVAFGLAPRI 291 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NAAGR+ + + LLL ++ A+ LA +L+A NQ R+ E G+ +A+T E+ Sbjct: 292 NAAGRMGSATEALDLLLAPDLATAQPLAAKLEAANQERRTCEDGILEQAVTQVEE----- 346 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 + GL + +WHQG++GI+ASR+ ERF+RP I +G KGSGRSI + + A Sbjct: 347 RGVTEGLVLADAQWHQGIIGIVASRVVERFYRPTILLTR-HNGYWKGSGRSIVDVDLHAA 405 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L L + FGGH AAGLSL E K F QRF + +++ L + + DG Sbjct: 406 LTECADL----LAGFGGHPQAAGLSLTEANLKPFTQRFSQAISKQLGGAEPLPRLKLDGH 461 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLL 530 + ++ +++ + + P+G P+P+F ++ + + G++H+ + ++ G +L Sbjct: 462 IPFGQIDLDLIREIELLQPFGMGNPQPVFCSEPLQVQKHNVFGKKHVSLQLQDPKSGIVL 521 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 G A+ AL P VQLA+ +N ++G S+ + I + Sbjct: 522 TGKAWRQAEALTPSIQGETVQLAFTPRLNHYQGLTSIDLDIKDWR 566 >UniRef50_C8QX81 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX81_9DELT Length = 592 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 200/581 (34%), Positives = 302/581 (51%), Gaps = 31/581 (5%) Query: 14 ETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFR 69 ++ L LP L + RG R +E ++ + + G+ +AVE++ N+ Sbjct: 23 KSLALDLGLPEALVAVLLRRGHRDRAGIESFLRPNLADLPDPDLMLGMSRAVELIANSMG 82 Query: 70 EGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR- 128 I+V D+D DG ++ A+ + +L C ++ YL+P+R EDGYG+ ++ + A+ Sbjct: 83 SRQPIVVYADYDVDGLSAGAVLYKFLENLNCRDLYYLLPHRGEDGYGVHAHLLAELRAKL 142 Query: 129 --GAQ-LIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFP 185 A+ L++TVD GI H + AR LG VIVTDHH P DTLP A AI+NP+ C FP Sbjct: 143 GGNARPLLITVDCGIGDHQALIEARELGYTVIVTDHHRPEDTLPPAAAILNPHQAGCPFP 202 Query: 186 SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNR 245 K+LAGVGVAFYLM+ LR L QG+F ++ NL E +DLVALGTVAD+V L NR Sbjct: 203 CKNLAGVGVAFYLMMGLRRHLAGQGFFADQ--PPVNLKEYMDLVALGTVADMVALRGANR 260 Query: 246 ILTWQGMSRIRAGKCRPGIKALLEVANR--------DAQKLAASDLGFALGPRLNAAGRL 297 IL G+ ++ + RPG+ AL A + + + D+ F+L PRLNAAGR+ Sbjct: 261 ILVRAGLEVMQESR-RPGLVALAVAAGIKPPKGEGSEKRAIYPEDISFSLAPRLNAAGRV 319 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 LL+ DN EA+ LA EL+ LN+ R+++ + +A E+ + Sbjct: 320 ATPETAFRLLITDNPAEAQALAAELEELNRWRRQLSDQVYRQAKERAAASEQQK---MQV 376 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 L + WH GV+GI A+R+++ F+RPVI F L+GSGRS +GL + ++ Sbjct: 377 LVLADENWHTGVLGIAATRLQQDFNRPVILFGYESPNILRGSGRSFEGLDLLAMVDACSE 436 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 L +L +GGHA A G++L+ + FQ + E + + + D + + Sbjct: 437 L----LLGYGGHAAALGVTLDPGRLAEFQAQLNEAAGRIMAERQPEPTITVDWHFADGRI 492 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAF 535 + P+G PEPLF L Q +VG + HL+ + L GIAF Sbjct: 493 DAGLTTNYHLLEPFGPGNPEPLFQVKGPLAQAGVVGREQNHLRFRWQQKDFN--LPGIAF 550 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 N +L P N V+L + L N ++G + Q+ +I P Sbjct: 551 NYGNSLKPSN-PGPVELIFALRRNIYQGRVAWQLQAKSIKP 590 >UniRef50_Q5FGN3 Single-stranded-DNA-specific exonuclease recJ n=18 Tax=Rickettsiales RepID=Q5FGN3_EHRRG Length = 590 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 173/567 (30%), Positives = 288/567 (50%), Gaps = 28/567 (4%) Query: 15 TADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLSGVEKAVEILYNAFR 69 T L ++ R+ ++R + + +E+ + + + ++KAV + +A Sbjct: 36 TIKQKFYLSEIVARILSARKI-NIEEISNFLYPTLKSSLPNPFHMLDMDKAVYRICHAIH 94 Query: 70 EGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARG 129 I++ GD+D DGATS+AL + +G Y +P+R +GYG + + + + G Sbjct: 95 NRENIVIFGDYDVDGATSSALIKQYLSQIGVPTTIY-IPDRICEGYGPNTQALLKLKEIG 153 Query: 130 AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSL 189 L +TVD G +H + A+S+ + VIV DHH+ +TLP A A+INPN D P L Sbjct: 154 NSLCITVDCGTIAHEPISAAKSVNLDVIVIDHHIGINTLPDAVAVINPNRLDETSPYTYL 213 Query: 190 AGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTW 249 AGVGV+F +++AL L++QG+F +N PNL LDLVALGTV DV+P+ NR Sbjct: 214 AGVGVSFLMLVALHKTLKEQGFF--KNNQEPNLINYLDLVALGTVCDVMPIIGLNRTFVK 271 Query: 250 QGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLC 309 QG+ I + G+K L +V + + LGF +GP +NA GR+ + S+G LL Sbjct: 272 QGLK-IMTTRQNLGLKTLSDVIGLEEKP-NIYQLGFNIGPHINAGGRVGNASLGARLLST 329 Query: 310 DNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGV 369 +N EA ++ +L N RK +E EA+ E + + + WH G+ Sbjct: 330 NNEEEALEISEKLQNFNLERKTLENQSFNEAVEQIEAT-----IISSNIIIATGNWHPGI 384 Query: 370 VGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGH 429 +GI+A R+K++F P I + +G K S RSI + + A+ L G++++ GGH Sbjct: 385 IGIVAGRLKDKFFLPSIVIS-LENGIGKASARSIPDVDLGAAILEAKAL--GIIIEGGGH 441 Query: 430 AMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAG 489 AMAAG S++E+K + E +++ + DG ++ + +++ + L+ Sbjct: 442 AMAAGFSIQENKI----KILHEFLSQKFHNINTRKVFKVDGIVTAEAINLKLWKELQFLE 497 Query: 490 PWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV--DTALWPDNG 546 P+G PEP F + R+ ++GE H++ ++ + GI F Sbjct: 498 PFGIGNPEPRFILTNIRIKNPEVIGESHIRCLI--YDNKTFIKGICFRCIGTELGTTLLE 555 Query: 547 VREVQLAYKLDINEFRGNRSLQIIIDN 573 L K+ IN +RGN ++Q II++ Sbjct: 556 CTTTTLLGKISINYWRGNENIQFIIED 582 >UniRef50_A9IVX3 Single-stranded-DNA-specific exonuclease n=3 Tax=Bartonella RepID=A9IVX3_BART1 Length = 594 Score = 547 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 186/574 (32%), Positives = 291/574 (50%), Gaps = 20/574 (3%) Query: 13 DETADLPAELPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAF 68 P L R+ ++RGV + ++ +++ ++P + ++ A E + A Sbjct: 31 ARAISQKFGFPDQLARVLSARGVDETEAVAFIDPTLRMLMPDPESFRDMQCAAERIVKAL 90 Query: 69 REGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR 128 ++ V GD+D DGA ++AL R G + +P+R +GYG + + + Sbjct: 91 LNQEQVAVFGDYDVDGACASALIARFFRYFGIE-VKIYIPDRIVEGYGPNEQAMRMLVQE 149 Query: 129 GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKS 188 GA+LI+TVD G +S V+ AR G V++ DHH + A A++NPN D Sbjct: 150 GARLIITVDCGANSPDAVKAARLAGADVVILDHHQMSEIHQEAIALVNPNRPDDFSEQGY 209 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 L GV F + + LR + + +P+L +LDLVAL T+ DVVPL NR Sbjct: 210 LCAAGVVFVTLAWVHHLLRKK----QFEGPLPDLLSMLDLVALATICDVVPLQGVNRAFV 265 Query: 249 WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 308 +G+ + GI AL +VA + L + LGF LGPR+NA GR+ D ++G LL Sbjct: 266 VKGL-HVARSMHNLGIAALTKVARI-GEPLNSFHLGFLLGPRINAGGRIGDQALGARLLS 323 Query: 309 CDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQG 368 C+N EA +A +LD LNQ R+E+E+ +A + L + ++ P L + H EWH G Sbjct: 324 CENKDEADRIAEQLDQLNQERQEMEKIQLAQAESYIASLYQDQEP-PLSLVISHQEWHPG 382 Query: 369 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGG 428 ++GILASR+KERF PV A A DG GSGRSI G+ + + TL ++ K GG Sbjct: 383 IIGILASRLKERFFCPVFAIALKEDGNGVGSGRSIHGIDLGALVREAVTL--NLLEKGGG 440 Query: 429 HAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 H+MAAG++++ K + F++ E V+ + + + DG LS + + +LL A Sbjct: 441 HSMAAGITIQSTKIEFFRKWLEEKVSVMVSQLHAKKSLRIDGSLSASGANQALFELLEKA 500 Query: 489 GPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD--- 544 GP+G P+F RL+ VG+ HL++++ G G L GIAF D Sbjct: 501 GPFGTGNATPVFVLPSHRLMNLSEVGKGHLRLII-SNGEGKKLQGIAFRAVGTALGDFLS 559 Query: 545 -NGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 N + LA L +N + G + Q+ + + + Sbjct: 560 RNIGEMIHLAGHLSLNYWNGTINPQLRVIDAAAV 593 >UniRef50_B7AQW7 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AQW7_9BACE Length = 577 Score = 547 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 174/594 (29%), Positives = 295/594 (49%), Gaps = 37/594 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSG 56 M ++ + + ++ R+ +R V + E + + M + G Sbjct: 1 MSIWKVYAKKADFKAIGARFGINQVIARIIRNRDVTEDSQYEEYLYGGLESMHDPVLMKG 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + +AV ++ NA +G RI ++GD+D DG S + + G ++ DY+VP+R DGYG Sbjct: 61 ISEAVAVIKNAIADGKRIRIIGDYDIDGVCSICILHKGLIMAG-ADADYVVPDRITDGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG----------D 166 ++ ++ A A G +I+T DNGI+++ + +A+ GI +IVTDHH Sbjct: 120 INENLIRNAIADGIDMIITCDNGIAAYDAIAYAKENGITIIVTDHHDVPFRENADGTREY 179 Query: 167 TLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL 226 +P A+ +++P DC +P K L G VA+ ++ L F L LL Sbjct: 180 IIPPADVVVDPKQSDCGYPFKELCGALVAWKMIQHLLGQKPKDSEF---------LMYLL 230 Query: 227 DLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFA 286 +L A+ TV D+V L NR + QG+ I AG G+K L++V A +GF Sbjct: 231 ELGAIATVGDIVSLQGENRTIVKQGLRHIHAGTRNVGLKTLMDVCGVAEADFNAYHIGFV 290 Query: 287 LGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK 346 +GP LNA+GRLD + LL D+ +A+ LA EL LN RK++ + A E+ Sbjct: 291 VGPCLNASGRLDSAVKAIRLLETDDEKQAQALAAELKLLNDERKDMTERGVENACNTVER 350 Query: 347 LERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA--GDGTLKGSGRSIQ 404 + +P + ++ H+ V GI+A R++E+++RP I F + G KGSGRSI+ Sbjct: 351 --EYGNNIPQIIVVHLDNCHESVAGIIAGRVREKYYRPCIIFTDSIGEHGIYKGSGRSIE 408 Query: 405 GLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQG 464 M + R + M+ KFGGH MAAG+S+ ++F+ F++ + + L Sbjct: 409 PYDMFAGVNR----FRDMLEKFGGHHMAAGMSIRSERFEEFRECLVNSMD--MSDEELTP 462 Query: 465 EVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGER-HLKVMVE 522 D P+ +T EV + L+ P+G+ P+P+F D + ++++ ++G+ ++ M+ Sbjct: 463 VTWIDVPMPLDYVTEEVTEQLQLLEPFGKDNPKPVFADKNLTVVRKNIIGKNRNVLKMIL 522 Query: 523 PVGGGPLLDGIAFNVDTALWPDNGVRE-VQLAYKLDINEFRGNRSLQIIIDNIW 575 G L+ + F+V + + + + Y DIN F GN +LQ+II I Sbjct: 523 QTVNGRRLEAVKFHVTQEEADNMKTGDIISIVYYPDINTFNGNSTLQMIISEIK 576 >UniRef50_C0EBF3 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBF3_9CLOT Length = 678 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 166/580 (28%), Positives = 281/580 (48%), Gaps = 27/580 (4%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV--KGMLPWQQLSGVEK 59 K Q + E + + + L + A+RG++ ++ + + L ++K Sbjct: 5 KWQYRAGAEERIQEIEETFGVSRFLAGILATRGLQD-DQINDLLGETELESPFALKDMDK 63 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 AVE + A G +I V GD+D DG TSTA+ + S+G + + + +P R + GYGL+ Sbjct: 64 AVERINRAVEAGEKIAVYGDYDCDGITSTAVLCTYLSSIG-AEVTHYIPERDDGGYGLNR 122 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 +D G QL++TVDNGI++ ++A LG+ +I+TDHH GDTLP A A+I+P Sbjct: 123 PALDHLKGEGVQLLITVDNGITAVEEADYAAQLGMELIITDHHRVGDTLPQAVAVIDPQR 182 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 DC K LAGVGVAF L+ A+ E + DLVA+GTV DVVP Sbjct: 183 EDCPSRYKFLAGVGVAFKLVAAM-----------EDGDYESTFSYFGDLVAIGTVGDVVP 231 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 L NR + +G+ +I + G+ A+ + A + + + F + PR+NAAGR Sbjct: 232 LTGENRTIVKRGLKQIEFSE-NIGLGAIFDKAKIAKTNVTSQYIAFGIVPRINAAGRFGM 290 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 + LL+C++ + + +A EL+ LN E +I+ E R L Sbjct: 291 ANKVFDLLMCEDEKQCKKMATELNQLNMQ--RQEIEQEIQQQIREELTANPRKLYNRVLV 348 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 W G++GI+++R+ E + RP + A G +GS RS+ G + +AL+ +L Sbjct: 349 FAREGWPHGIIGIVSARVTETYGRPSVLLAIEEGGVARGSARSVDGFSIYEALDANRSLC 408 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 K GGH+ AAGL+++ + +Q + E + + D ++ +++T+ Sbjct: 409 E----KMGGHSAAAGLTIKAENIPALEQGLNDYAREHC-ERMPEPTYQIDFTVNASDLTV 463 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRL--VGERHLKVMVEPVGGGPLLDGIAFNV 537 + L P+G P PLF L + G +H+K+ + G ++ I F V Sbjct: 464 QNVNSLAMLEPFGAQSPSPLFLIKNARLDAVVPLSGGKHIKLKLITETG--IIQAIYFGV 521 Query: 538 DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 + + + L LDI+ F G +++ + + ++ P+ Sbjct: 522 QRSCFYYQPGAVLNLLVALDISFFNGVQTVSVKVKDVRPV 561 >UniRef50_Q2RRN7 RecJ exonuclease n=3 Tax=Alphaproteobacteria RepID=Q2RRN7_RHORT Length = 606 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 210/586 (35%), Positives = 314/586 (53%), Gaps = 23/586 (3%) Query: 3 QQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSG 56 ++ LR + + + L P ++ R+ RGV+ + L +++ +LP L Sbjct: 30 RRWVLRPGDERQALAISQRLGVPEVVGRVLTGRGVQVEEADGFLTPTLRALLPDPGHLLD 89 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV L A R+ I + GD+D DGATSTAL RSLG + + +P+R +GYG Sbjct: 90 MDKAVARLSKAVRDKETIAIFGDYDVDGATSTALMHRFFRSLG-ARVLIHIPDRVLEGYG 148 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + ++ A+GA++++TVD GIS+ + A++ G+ V+V DHH LPAA A++N Sbjct: 149 PNAPALEALAAKGARVVLTVDCGISAFDALRAAKAAGLDVVVCDHHEARTELPAAVAVVN 208 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P D P LA VGVAF + +A+ LRD GWF P+L LLDLVALGTV D Sbjct: 209 PKRLDEASPHTHLAAVGVAFLMAVAINRDLRDSGWFAAEQRPPPDLMALLDLVALGTVCD 268 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +VPL NR L QG+ I A + PGI AL EV+ ++ A LGF LGPR+NA GR Sbjct: 269 MVPLIGVNRALVQQGLKVI-AKRTNPGIAALAEVSGVR-DRVDAFHLGFMLGPRVNAGGR 326 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + +G ALL ++ E A +LDA N RKEIE + +A+ E + L Sbjct: 327 VGQAGMGAALLSSEDPLECLDFARQLDAFNGARKEIEAAVLHQAIEQVEAAPANDLPL-- 384 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 + +WH GVVGI+ASR+KER+ P A A G G KGSGRS+ G+ + + + Sbjct: 385 -VFASGTDWHPGVVGIVASRLKERYGLPACAVALDG-GLAKGSGRSVGGVDLGRVV--IA 440 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 G++ GGHAMAAG SL D+ + F+Q GE + + + L + DG L Sbjct: 441 AREAGVLEAGGGHAMAAGFSLRTDRLEEFRQFLGERLKDQVAALALVASLDLDGVLDVRG 500 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 ++ + L AGP+G PEP F + R+ + +VG H++ + GG L +AF Sbjct: 501 ANAQLVRALSQAGPYGSGNPEPRFAVANARVGKVDVVGMGHVRCFLNGPSGGS-LKAMAF 559 Query: 536 NV-----DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 AL +G + +A L ++ F+G ++ +++D++ P Sbjct: 560 KAADSEIGHALLTAHGA-SLHVAGTLRLDSFQGRETVVLVVDDVAP 604 >UniRef50_UPI00016C4908 single-strand DNA-specific exonuclease n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4908 Length = 592 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 186/595 (31%), Positives = 285/595 (47%), Gaps = 34/595 (5%) Query: 2 KQQIQLRRREVDETADLP--AELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 ++Q L + T L A + ++ +L +RGVR A R + + P L Sbjct: 5 EKQWHLLPADSSATNRLAGSARVSSVVAQLLLNRGVRDAAAARRFLDSPLGALHPPLALP 64 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 GV++A E + A RI V GD+D DG T T++ + + LG +++ + VP R +GY Sbjct: 65 GVKEAAERVVRAVTARRRICVYGDYDVDGVTGTSILLRVLGKLG-ADVQFHVPLRLSEGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP-----GDTLPA 170 GL+ E + + + G QL+++VD GI+S A + AR LG+ +IVTDHH G LP Sbjct: 124 GLNSERLHELYRNGVQLVISVDCGIASIAEAQTARDLGLELIVTDHHEMKMGLDGPLLPV 183 Query: 171 AEAIINPN-LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLV 229 A+ +++P +P L+G GVAF L A+ R G L + + L Sbjct: 184 ADVLVHPRLRAAEPYPFGDLSGAGVAFKLAWAVAQ--RASGSEKVSADLREVLLDSVGLA 241 Query: 230 ALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQK-LAASDLGFALG 288 ALG VADVVPL NR+ G+ RI+A G+KALL+ + + L A D+GF L Sbjct: 242 ALGLVADVVPLRDENRVFVRHGLERIKANPS-VGLKALLDASGVKPDQVLTAEDVGFKLA 300 Query: 289 PRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLE 348 PRLNAAGRL S V LL + +AR LA +L+A N R+ E+ A L E+ Sbjct: 301 PRLNAAGRLGCASFAVELLTTQSPTKARQLAEQLEAQNGDRQARERKYTQAAKELVEEQF 360 Query: 349 RSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLH 407 + + PEWH GVVGI+ASR+ + F +P + A + GSGRS+ G Sbjct: 361 ADD----PAIVVGSPEWHPGVVGIVASRLVDYFGKPALVIAMQPNEAVSTGSGRSVTGFA 416 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 + AL D + G A AAGL + D+ + RF V + Sbjct: 417 LHTALVACDDILEGHGGH----AAAAGLKVRPDRIPALRDRFNAYVRSHYPGGAPAQTLT 472 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVG----ERHLKVMVE 522 D + + +T + L P+G P P F ++ RL+G +RH + Sbjct: 473 LDAEVPLSALTFGLINDLDKLEPYGAGNPRPKFLAAGLKVEAARLIGTGEIQRH--MDFR 530 Query: 523 PVGGGPLLDGIAFNVDTALWPD-NGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 G + +A+ + + + + LA+ INE++G+R L++ + ++ P Sbjct: 531 VRQGDTTIRCVAWGMADRMEELMSAGGDCCLAFTPKINEWKGSRKLELQVIDLKP 585 >UniRef50_B1ZV73 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Verrucomicrobia RepID=B1ZV73_OPITP Length = 573 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 188/588 (31%), Positives = 291/588 (49%), Gaps = 30/588 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSA----QELERSVKGMLPWQQLSG 56 M+ E E A + +L L G+R A L ++ + L Sbjct: 1 MRWTHTPVPTEEIEALSKGAGVSRVLAELLLRAGLRDAGGCATFLAPALAALQDPFLLRN 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 V+ A L A ++V+GD+D DG +STAL V +R G ++VP R EDGYG Sbjct: 61 VDAAATRLRQAIANQESVVVLGDYDVDGVSSTALLVSVLRRFGLLP-RFVVPRRSEDGYG 119 Query: 117 LSPEVVDQAHARG-AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 LS +D+A G L V +D G +SH V + R GI VIV DHH + +I Sbjct: 120 LSRSAIDRALEGGRPHLFVVLDCGTNSHDEVAYLREQGIDVIVLDHHRSKERALDGM-LI 178 Query: 176 NPNLR----DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 NP++ + P + L VG+ F L L LR + I L + LDLVAL Sbjct: 179 NPHVHRDDTGADGPWRHLCTVGLVFKLAHGLLKQLRAENHPVAFRI---KLRDHLDLVAL 235 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQK-LAASDLGFALGPR 290 GTVAD+VPL NRIL G++ ++ + RPG++AL+EVA + + D+ F LGPR Sbjct: 236 GTVADLVPLLGENRILARHGLTILQESR-RPGLRALMEVAGVKPENGINPVDISFRLGPR 294 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NA+GRL D ++ V LLL +++ + A +LDA N+ R+EIE+ + EA L E + Sbjct: 295 INASGRLADAALSVELLLSEDLAFCQQTAQQLDAFNRERQEIERKITEEAEQLIE----T 350 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRD 410 G+ ++ +WH GVVGI+A R+ +++RP + G+ KGSGRSI GL++ + Sbjct: 351 HYADSPGIVLFSEDWHPGVVGIVAGRVTRKYNRPCVVLGNEGE-FAKGSGRSIDGLNLVE 409 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 L ++ +GGH MA G++L ++ +F+++F V ++ + + Sbjct: 410 VLGTCCD----HLVSWGGHPMAVGIALRKEHLPVFREQFAAAVRTQAGDAIAEARLELAA 465 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ--QRLVGERHLKVMVEPVGGGP 528 L+P ++T + L P+GQ EP F +L+ + H + E G Sbjct: 466 WLTPEQITPRLMDELEQLHPFGQGNAEPRFGVRGVVLRTAPEIFKTFHFRFNFED-QRGR 524 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 L G+A+ + + L P V LA +L N F + LQ+ + + P Sbjct: 525 RLHGVAWKMASRLLPVGV--PVDLAVELKWNHFNDRKFLQLCLVDWRP 570 >UniRef50_A7KV88 SsDNA exonuclease n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7KV88_9CAUD Length = 577 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 160/573 (27%), Positives = 276/573 (48%), Gaps = 38/573 (6%) Query: 23 PPLLRRLYASRGVRSAQELERSVKG-MLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 L+ + +RG+ +E R K + ++ ++KAV + A ++ I + GD+D Sbjct: 17 DDLIYDILEARGIEDVEEFLRITKKKLHNPYKMRDMKKAVTRIIEAVQKKETIGIFGDYD 76 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 ADGA+STA+ VL +R LG ++ Y VP+RF+DGYG++ +D G L++T D GI+ Sbjct: 77 ADGASSTAIWVLILRELGL-DVMYFVPDRFKDGYGVNQRGLDLFADNGVDLVITCDTGIT 135 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDT-----------------LPAAEAIINPNLRDCNF 184 + V +A++ G+ +I+TDHH P ++ L ++NP DC + Sbjct: 136 AIQQVAYAKNKGMDIIITDHHEPQESSAYKDDVQKVGQHIGDYLIPDTIVVNPKRPDCKY 195 Query: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANN 244 P K LAGVGV+F ++ A+ + G + +D+VALGT AD++ + N Sbjct: 196 PFKGLAGVGVSFKILCAVCDKIHPAGRAGA--------YQYMDIVALGTFADMMDIIDEN 247 Query: 245 RILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGV 304 R++ G+ + R G+ L +++ + D+G+ + P +NAAGR+ V Sbjct: 248 RVIGKLGIDMMNRKPNR-GLYQLFRANEL--KQITSQDIGWTIAPCINAAGRIVSAEEAV 304 Query: 305 ALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE 364 +L+ N A A +L +N+ RKE+ + + E D + Y+P Sbjct: 305 DMLISTNKLAAYRCAKKLVEINKERKELTKTYVGNIIKSVEA--DQIDNPTNIIVHYYPG 362 Query: 365 WHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMM 423 +G+VG++ASR+ F++P I A + G KGSGRSI G + +L R + G Sbjct: 363 IPEGIVGLIASRLMNHFYKPSIIMTDADEPGLYKGSGRSITGFDLFTSLMRQTDVMEG-- 420 Query: 424 LKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483 FGGHAMA GLS+ DKF+ + R L + LQ +V D + + ++ Sbjct: 421 --FGGHAMACGLSVTNDKFQELKTRMEFLADTMISEIDLQPKVYVDAIVKGNIIDLDFVD 478 Query: 484 LLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALW 542 + P+G+ +P F R++++ VG+ + G I F + Sbjct: 479 EMNKMEPFGRGHAQPSFMMEKMRVIREMPVGDEKNHLWALMSDGKKTFSTIGFFLYEKYE 538 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + + + D NE++G +Q+ I ++ Sbjct: 539 ALGKPKNIDIVFVPDRNEYKGKVDVQLKIKDLR 571 >UniRef50_Q7NPL4 Single-strand-DNA-specific exonuclease n=1 Tax=Gloeobacter violaceus RepID=Q7NPL4_GLOVI Length = 773 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 178/585 (30%), Positives = 291/585 (49%), Gaps = 31/585 (5%) Query: 2 KQQIQLRRREVDETADLPA--ELPPLLRRLYASRGVRSAQELERSV---KGMLPW--QQL 54 KQ+ ++ + + + L L PL+ ++ +RG+ + + E + +LP + Sbjct: 11 KQRWRIAQEDPVQARQLAEAFGLSPLIAQVLINRGLTTCELAEHFLAPESWVLPSAGEAF 70 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 + +A+++L A GT I + GD+D DG TSTAL + A+RSLG +I+Y +P+R ++G Sbjct: 71 DQLPRALDLLAQAIESGTAIAICGDYDCDGMTSTALLLRAVRSLG-GHIEYAIPSRLQEG 129 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG++ +V+ + RG LI+TVDNGI ++A + A LG+ VI+TDHH + LP A+AI Sbjct: 130 YGINLRIVEAFYERGIGLILTVDNGICAYAPIARAVELGMGVIITDHHDLPERLPPADAI 189 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NP + P +LAGVGVA+ L L L G D LL+L LGTV Sbjct: 190 LNPKMIPRTSPYAALAGVGVAYVLAGELARRLGRTGLAD----------CLLELFTLGTV 239 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ-KLAASDLGFALGPRLNA 293 AD+ PL NR G+++I G G++ALL + + L +GFALGPR+NA Sbjct: 240 ADLAPLVGVNRAWVLSGLAKIP-GSSNTGVQALLAASGLAGRSDLKPEAIGFALGPRINA 298 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 GR+ D + LL D+ A A E + NQ R+ + ++ EA + E + Sbjct: 299 VGRIGDPVTVIELLTTDDPAVAAERAAECELANQHRQALCAQIEAEAARMLEVEQAGGLD 358 Query: 354 L--PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 L + + WH GV+GI+ASR+K+R PV A G+ +GS R H+ +A Sbjct: 359 LGCERVIVLAREGWHHGVIGIVASRLKDRHGAPVFIAAIEGEH-ARGSARGTPEFHVYEA 417 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L+ L + FGGH MA G SL F++R + L P + V D Sbjct: 418 LKDSAEL----LTGFGGHPMAGGFSLLAANLPAFRERLVQFARARLAPEQVAPLVEVDAQ 473 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLL 530 + A + + + P G EP+F R+++Q+ +G+ + + G Sbjct: 474 VQLARVDRRLLGEIDRLQPCGLGNAEPVFWVAGARVVEQKAMGKTRTHLNLTVSDGTAER 533 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + + L V +A+++ N ++G+ +++ + + Sbjct: 534 RAVGWRMAEWLPLPPF---VDIAFQVKENNWQGHSKVELELVGLR 575 >UniRef50_C8WA12 Single-stranded-DNA-specific exonuclease RecJ n=4 Tax=Coriobacteriaceae RepID=C8WA12_ATOPD Length = 1120 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 175/582 (30%), Positives = 289/582 (49%), Gaps = 34/582 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSG 56 + + + ++ + + PL+ R+ +RG E + + L Q + G Sbjct: 9 RWSVLTQDVYLESLFEKELHVTPLVARVLVARGFTDVAEAQEFLSPSLQRDWLDPQCIPG 68 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + + + A E +I V GDFD DG +ST L LA+R LG +++ +P+RF +GYG Sbjct: 69 MAEVANRVQKAIVEQQKIAVFGDFDVDGMSSTCLLTLALRRLG-ADVLPYIPHRFGEGYG 127 Query: 117 LSPEVVDQ-AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 LS E + + R LI+TVDNGI++ V GI V++TDHH P D +P + Sbjct: 128 LSKEALARVLLDRKPDLIITVDNGIAAAQEVAWLLEQGIDVVITDHHEPADLVPQGVPVT 187 Query: 176 NPNL-RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +P L DC PS+ LAG GVA L+ L + + +D+ LGT+ Sbjct: 188 DPKLIEDC--PSRELAGAGVALKLVQVLGQLQNQPQLW----------LDYIDVAMLGTL 235 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 +D++ L+ NR L +G+ R++ G RPG+ AL VA +D +++A +L F++ PRLNAA Sbjct: 236 SDMMMLNKENRALVSEGVKRLQKG-LRPGLVALAAVAGQDIAQISADNLPFSIIPRLNAA 294 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ + + LLL ++ EA +LA +L+ +N R+ IE + EAL +++ Sbjct: 295 GRMGTTDIALDLLLTEDAEEATILAGKLEEINAERRAIEAKLTDEALEQAKEIYDGG--- 351 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 + + WH+GV GI+ASRI R+H P I F DG +GSGRS+ + + A+E+ Sbjct: 352 -HAIVLAKEGWHEGVKGIVASRIVNRYHVPCILFTI-QDGVARGSGRSVGSVDLFHAVEQ 409 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 L ++FGGH A G+++E K F++R E++ E L + ++ Sbjct: 410 CADLT----VRFGGHQGAVGVTVETSKIDAFRKRLSEVMAE-LPEEEFESSGEVTALVNL 464 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQR-LVGERHLKVMVEPVGGGPLLDGI 533 E+T+ L P+GQ +PLF +++ R VG + G + I Sbjct: 465 DEITINSIDALEALQPFGQGNKKPLFGVKGVVMKNRSRVGAGGAHLCFMASNGISSISSI 524 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINE-FRGNRSLQIIIDNI 574 F V L ++ +NE ++G ++++ +I Sbjct: 525 MFRTPHVEAAAEYDGAVDLIFE-AVNETWQGRTKPKLMVRDI 565 >UniRef50_C7RHH6 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Anaerococcus RepID=C7RHH6_ANAPD Length = 576 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 177/597 (29%), Positives = 284/597 (47%), Gaps = 43/597 (7%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSA----QELERSVKGMLPWQQLSG 56 M ++E ++ L + A+R + + S+ + L Sbjct: 1 MANWYIYNKKENYINNLKNKDITKLEALILANRDIVDPFVVDMFINPSLDKLHDPFMLKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 V+KA++++ + I + GD+D DG S + + NI Y +P+R EDGYG Sbjct: 61 VDKAIDLIIETIQNNGEIRIFGDYDQDGIASVMTLLDGLLFY-YDNISYDIPHRVEDGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT--------- 167 +S + ++A A L++T DNGI+ V+ + I VIVTDHH Sbjct: 120 ISNNMSEKAIADKVSLVITCDNGITGFDQVKKLKENNINVIVTDHHQIEKEDNDGWVNQI 179 Query: 168 LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLD 227 LP A+ +INP+ D ++P K L G GVAF LM AL L + L LL+ Sbjct: 180 LPDADCVINPHRLDSSYPFKDLCGAGVAFKLMQALYMKLEGDFEY---------LFSLLE 230 Query: 228 LVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFAL 287 VA+GTV D+V L NRI +G+ R+ A + + IKALLE A +++ LGF L Sbjct: 231 YVAMGTVCDIVSLTDENRIFVIEGLKRLNATE-KYAIKALLEEAGWR-KEINEYTLGFIL 288 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 GP +NA GRL + + LL+ ++I + ANEL LN RK + + + + + E Sbjct: 289 GPLMNATGRLSTAKLAIELLMEEDIDKIHEYANELVNLNNKRKSLTEEGINKCIKIAEDK 348 Query: 348 ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAP-AGDGTLKGSGRSIQGL 406 +D + + +Y P + + GI+A RIKE+++RP I + +G LKGSGRSI+ Sbjct: 349 SYDKDDV---IVIYEPSIDESICGIVAGRIKEKYYRPTIILTNSSKEGVLKGSGRSIETY 405 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 +M DA+ + + FGGH MA GLS++ D F+ + L L+ + Sbjct: 406 NMHDAIVP----FDHKLESFGGHPMACGLSIKVDILDEFRIFLNK--NSNLSKKDLEEVI 459 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVG 525 D + + +++E A+ L P+G+ P P+F + ++G+ + ++ Sbjct: 460 NIDTQIKLSNLSLEFAESLESLSPFGKDNPRPIFANKGVDIADIAMIGKDKKTMRMKLFQ 519 Query: 526 GGPLLDGIAFNV-------DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 G + I FN ++ + Y D+NEFRGNR+LQI + +I Sbjct: 520 NGNYYNAIKFNALDDYEYLSLKFDGKIKGNKIDIVYYPDVNEFRGNRTLQIKLIDIR 576 >UniRef50_UPI00017452AB single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017452AB Length = 620 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 182/569 (31%), Positives = 278/569 (48%), Gaps = 32/569 (5%) Query: 15 TADLPAELPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSGVEKAVEILYNAFRE 70 + L A LPPLL RL A RG+ + + + ++ L L + +AV+ + A Sbjct: 73 STTLGATLPPLLVRLLALRGLATEAQAKGFLQPRLAELGDPFILPQMRQAVDRILLAVDR 132 Query: 71 GTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR-- 128 ++++ GD+D DG TS L L +++ G +L P R E+GYGLS + + + Sbjct: 133 QEQVVLYGDYDVDGVTSLTLMTLVLQAYGLQPHAFL-PLRMEEGYGLSHDGLLRCFEEHG 191 Query: 129 GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKS 188 L++ +D G S A + + G+ I+ DHH P LP A++NP L Sbjct: 192 KPALLIAMDCGTVSVAETDWLQQEGVDCIIVDHHEPAHRLPTCVALVNPKLEAHT-GLTY 250 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 VG+ F L AL R + +L E LDLVA+GTVAD+VPL NR L Sbjct: 251 FCTVGLVFKLTHALLKT---------RRLDTFDLKEHLDLVAMGTVADLVPLKDENRALV 301 Query: 249 WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 308 +G+ ++ A R G+ AL +VA D + A +G+ LGPRLNAAGRLD + LLL Sbjct: 302 RKGLEKL-ATTRRVGLCALKQVAGVDG-FIQAHHIGYRLGPRLNAAGRLDTAQTALDLLL 359 Query: 309 CDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQG 368 C++ AR A+ LDA N+ R+++E Q EAL + + + + WHQG Sbjct: 360 CEDPQFARECADLLDAHNRERQDVESVAQKEALAMMAADPTLGEA--ACIVLGSRSWHQG 417 Query: 369 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGG 428 VVGI+ASR+ HRP + A DG KGSGRS+ G+ + AL++ L +LK GG Sbjct: 418 VVGIVASRLMRDHHRPTLLLAFGQDGHGKGSGRSVTGISLVAALDQCRHL----LLKGGG 473 Query: 429 HAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 H MA G+SL+E+ F+ V + L + +S +++T + Sbjct: 474 HPMAVGVSLKEENLADFRAAMSAAVESQITADELTPRLHLSAEISLSDLTPRFLEQYTLL 533 Query: 489 GPWGQMFPEPLFDGHFR--LLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNG 546 P+G EP+F +L +++ E+H K+ + GG + FN A D Sbjct: 534 EPFGMGNHEPIFLCRGMEPILPGQVLKEKHWKLTLRQ--GGQSRPAMWFN---APLNDIP 588 Query: 547 VREVQLAYKLDINEFRGNRSLQIIIDNIW 575 +A K+ +RG + Q++I + Sbjct: 589 PPPWDVALKVQRQVWRGQETWQLMISEVR 617 >UniRef50_A9BF16 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BF16_PETMO Length = 1035 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 153/578 (26%), Positives = 286/578 (49%), Gaps = 30/578 (5%) Query: 8 RRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM----LPWQQLSGVEKAVEI 63 ++ +V +T + L +L SR + + +E ++ + + + + KAVEI Sbjct: 18 QKDKVAKTLSSALGISDFLAKLLVSRNIETPEEGDKFLNHLELESFDPYLMKDMSKAVEI 77 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 L + ++ + GD+D DG T+T++ L ++ +G ++ +P+R E+GY L+ + ++ Sbjct: 78 LKQIKEKKEKVAIFGDYDVDGVTATSVLYLGLKKIGY-DVTSYIPSRIEEGYSLNVKAIE 136 Query: 124 QAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 + ++ I+TVD G +S +E+A+SLG+ VIVTDHHLP + LP A+AI+NP D Sbjct: 137 ELKSKNYNNIITVDCGTTSIQEIEYAKSLGMKVIVTDHHLPQENLPKADAILNPKREDDK 196 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 +P K LAGVGV F L+ AL + + E +DLVA+GT+AD+V + + Sbjct: 197 YPFKDLAGVGVTFKLLQALYKSYDNSL----------DPFEYIDLVAVGTIADIVSITSE 246 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NR L G+++++ + G+K LL+ ++ + + F + P++NAAGR+ D Sbjct: 247 NRYLVKIGLNKLKTNPTK-GLKYLLDELKIVDSEINSRTITFKVAPKINAAGRMSDARSA 305 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 LL+ + + + +EL LN R+ E+ + + +L+L + + L + Sbjct: 306 FNLLIEKDEEKLKKAVSELLRLNSKRQSTEKEIYLYSLSLLDLYPEYKK--DPVLVLSGE 363 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMM 423 +WH GV+GI+AS++ +F++PV+ + + KGSGRS QG+ + + L +++ G+ Sbjct: 364 DWHMGVLGIVASKLSNQFNKPVLMISKNQE-MGKGSGRSPQGIDLMELLLKVNE--RGIF 420 Query: 424 LKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483 +FGGH AAG S+ + ++ E+ E L ++ D + TM + Sbjct: 421 EEFGGHKFAAGFSILSKNIEALRKEINEVYKELYGDKKLTSQIDVDMEIEGIWETM--FE 478 Query: 484 LLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALW 542 + P+G EP+F + +L R ++D + +++ L Sbjct: 479 DINKLEPFGYGNQEPVFLIKNAKLENIRFFRNGSQSFSGTLNKDSLIIDILGYDLGYRLS 538 Query: 543 PDNGVRE----VQLAYKLDI-NEFR-GNRSLQIIIDNI 574 + L I N + N ++ + ++ Sbjct: 539 ELTENSKKDLFTDLVGTFRIENSYNLKNSYVKFYLQDL 576 >UniRef50_C7HTZ0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HTZ0_9FIRM Length = 581 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 166/597 (27%), Positives = 287/597 (48%), Gaps = 43/597 (7%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 M + ++ + + L + A+R + + ++ + + L Sbjct: 6 MTKWYIYNKKNNYLSNLKNKNITKLEALILANRDIVDPKVVDSFINPTLAKLHDPFLLKD 65 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +EKA++++ G I + GD+D DG +ST + + +I Y +P+R DGYG Sbjct: 66 MEKAIDLIIETMENGESIRIFGDYDQDGISSTMTLLDGLLYF-YDDISYDIPDRVIDGYG 124 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT--------- 167 +S ++D+A L++T DNGI++ V+ + GI VIVTDHH Sbjct: 125 ISDRMIDRAIEANVSLVITCDNGITAIDQVKKLKENGIKVIVTDHHQVSKKEDGEWVEQI 184 Query: 168 LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLD 227 LP A+ +INP D +P L G GVAF L+ AL L + + L LL+ Sbjct: 185 LPQADCVINPKRLDNTYPFDDLCGAGVAFKLIQALYQRL---------DGDMEYLYGLLE 235 Query: 228 LVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFAL 287 VA+GTV DVV L NRI +G+ RI + + IKAL+E + + ++++A LGF + Sbjct: 236 YVAMGTVCDVVSLTDENRIFVREGLKRINNTE-KLAIKALVEENSWN-REVSAYTLGFII 293 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 GP +NA GRL + + +L+ D+I + R A +L +LN RKE+ + L + + Sbjct: 294 GPCMNATGRLSTAKLAIDMLMEDDIEKIRTYAKKLVSLNTERKELTNIGLEKTLEIIKDK 353 Query: 348 ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAP-AGDGTLKGSGRSIQGL 406 + D + + + + + GI+A RIKE+F++P I + +G LKGSGRSI+ Sbjct: 354 KYYNDDI---IIVDVENIEESICGIIAGRIKEKFNKPTIIMTQSSQNGILKGSGRSIEAY 410 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 ++ + + ++ FGGH MA GLS+ DK + F+Q+ + L + Sbjct: 411 NIYKEVFEIKD----ILESFGGHPMACGLSIRSDKVEEFRQKLND--KSKLKKDDFVNII 464 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVG 525 D + ++++E A+ L+ P+G+ P+ F D + + ++G+ + + + Sbjct: 465 NIDAQIPIDKLSLEFAESLQRLEPFGKDNPKAKFADKNLFIKNINMIGKNNNTMKMILNK 524 Query: 526 GGPLLDGIAFNV-------DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 G ++ I FN + + + DINEF G R+LQ+ + +I Sbjct: 525 NGRDIEAIKFNAQKDYKYLSDKFKANIIGNRIDAVFYPDINEFNGRRNLQVKLIDIR 581 >UniRef50_Q1NUV0 RecJ exonuclease n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NUV0_9DELT Length = 569 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 195/563 (34%), Positives = 292/563 (51%), Gaps = 24/563 (4%) Query: 19 PAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFREGTRI 74 +P L + RG+R L+ + + L G+ A +L + +G I Sbjct: 20 SCNIPESLVAVLWRRGLRDPAALDAFLNPSLADLPDPDLLKGMAPASRLLADWLAKGAPI 79 Query: 75 IVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA--HARGAQL 132 ++ D+DADG T+ AL L +R LG + YL+P+R DGYGL P ++ A+ L Sbjct: 80 VIYADYDADGLTAGALLYLYLRRLGHRRLHYLIPHRVRDGYGLHPHLLASVPVAAQRQPL 139 Query: 133 IVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGV 192 ++TVD GI+ V A LG VI+TDHH P LPAA A++NP+ C+FP +LAGV Sbjct: 140 LITVDCGITDREAVAAATELGFKVIITDHHQPDGELPAAAAVLNPHQAGCSFPCPNLAGV 199 Query: 193 GVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGM 252 GVAFYL++ LR L +QG R +P L + LDLVALGTVAD+V + NRIL G+ Sbjct: 200 GVAFYLLMGLRRRLVEQG--SHRAAELPRLKDFLDLVALGTVADMVKVTGANRILIRAGL 257 Query: 253 SRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNI 312 ++ + RPG AL VA A D+ F+L PRLNAAGR+ + + LL+CD+ Sbjct: 258 EVLQGNQ-RPGPAALAAVAGITPGY--AEDISFSLAPRLNAAGRIGEPEIAFKLLICDDP 314 Query: 313 GEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGI 372 G+A LA ELD LN+ R+ + + + + + + L + H +WH GV+GI Sbjct: 315 GQAAALAGELDELNRQRRAMSDKIYQDVR---QTISSNIADLQNIILFAHEQWHPGVLGI 371 Query: 373 LASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMA 432 A+R+ + RP I A +G KGSGRS+ GL + A+ L + +GGHA A Sbjct: 372 AATRLALEYDRPAILCALT-NGVAKGSGRSVAGLDLLAAVAGCREL----LAGYGGHAAA 426 Query: 433 AGLSLEEDKFKLFQQRFG-ELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 G+S+ ++ F++R +L++E +GEV D + M + P+ Sbjct: 427 LGVSMPKEVVAQFRERLNQQLISELPRARQERGEVDVDWFFADGAMEPGFTAAYQRLAPF 486 Query: 492 GQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQ 551 G PEP F R+ + +VG +HL+ + + IAF AL +GV V+ Sbjct: 487 GPGNPEPQFRIRGRVGKATVVGSKHLRFSWQQAD--QSYNAIAFGRADALPLTSGV--VE 542 Query: 552 LAYKLDINEFRGNRSLQIIIDNI 574 + L N ++G S Q+ + + Sbjct: 543 FTFTLRRNFYQGRSSWQLKVSEL 565 >UniRef50_D0RNX1 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNX1_9RICK Length = 580 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 178/585 (30%), Positives = 301/585 (51%), Gaps = 24/585 (4%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLSG 56 + ++ + + E L L RL A+R + + + +E + + Sbjct: 10 EWVLKDFDKNLAEYISKEYNLDFLTSRLLANRNI-NQKNIENFLNPKIKNFLPNPYNFKD 68 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + K +EI+ + +I + GD+D DGATS+ + + L + +P+R +DGYG Sbjct: 69 MGKGLEIISRHIKNKNKICIFGDYDVDGATSSGIMSKYLEQLNIDHF-VFIPDRQKDGYG 127 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 S + + LI+ +D G +S +E+ARS I V+V DHH +T PAA AIIN Sbjct: 128 PSVKTFTNIINKNVNLIIALDCGTTSFEAIEYARSKNIDVVVIDHHKSQETFPAANAIIN 187 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 PN D L GV F ++ L LR+ +F++ + PNL +LLDLV +GTV D Sbjct: 188 PNRIDETGDYYYLCAAGVLFIFLVGLNKILRENYYFNKAKVQEPNLLDLLDLVMMGTVCD 247 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 VVPL NR QG+ + + + G+K L++ + +KL+ ++G+ LGP++NA GR Sbjct: 248 VVPLMDLNRAFVHQGLK-VASKRHNLGLKTLVDYSKI-KKKLSTYEVGYVLGPKINAGGR 305 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + +G LL +N A ++++EL++LN RK+IE+ + EA+++ E R+ Sbjct: 306 IGKSELGYNLLTTNNAETAYLISSELESLNLKRKDIEKKIVEEAISISE-----RNNDEP 360 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 + + +WH+G++GI+ASR+K+ F++P + G+ KGS RSI G + A+ + Sbjct: 361 IVFLSKNDWHEGLIGIVASRLKDHFNKPSFIISQKGED-CKGSARSIFGFDVGMAITKCK 419 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 L ++ K GGH MA G SL+ DK ++F+ L + L + + D L + Sbjct: 420 QL--NIITKGGGHPMAGGFSLKSDKLEIFKNELINLFLK-LKKNKDNNIIEIDSYLESSA 476 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 + E+ + L P+G EP+F F++ + H+KV++ G +D I+F Sbjct: 477 INDELIEKLNHLEPYGSGNREPIFGFEKFKVSKVIETKNNHVKVVL--NKGNFYIDAISF 534 Query: 536 ---NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 N D + N +E L K+ +NE+ G +++IID+I I Sbjct: 535 NSKNKDLGNYLMNFKKEFNLVAKIKLNEWNGKSKIELIIDDIQLI 579 >UniRef50_B0S1I9 Single-strand DNA-specific exonuclease n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S1I9_FINM2 Length = 580 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 153/601 (25%), Positives = 277/601 (46%), Gaps = 47/601 (7%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELER--SVKGMLPWQQLSGVE 58 M + + R + PL+ ++ +R + ++ + + ++ Sbjct: 1 MNKWLINNRGNNYNEISKKYNIHPLIAKILLNRNITDFEKFLNPNAENSYHNPFLMKDMD 60 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 KAV+I+ + +I +VGD+D DG +ST + + I Y +PNR DGYG+S Sbjct: 61 KAVDIIISTIDHNEKIRIVGDYDQDGNSSTMTLLDGLGYF-TDKISYDIPNRMTDGYGIS 119 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP-----GDTLPAAEA 173 ++D+ LI+T DNGIS+ ++AR GI +IVTDHH + +P A+A Sbjct: 120 FSIIDKCIEDNIDLIITCDNGISAIEQCDYARKNGIKIIVTDHHQTIKHDGKEIIPNADA 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 ++NP + C +P KSL G GVA+ L+ A+ ++ + LL VA+GT Sbjct: 180 VVNPQQQSCKYPFKSLCGAGVAYKLIQAINI---------KKGYGMLQCENLLQYVAMGT 230 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 V D+V L NR +G+ I G+K L+ + + LGF +GP +NA Sbjct: 231 VCDIVDLKDENRYFVTKGLEEINNTD-NYGLKCLINMTGI-KNAVNVYSLGFIIGPCINA 288 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGRLD +GV L +N+ A L LN+ RK++ + +A+ + E D Sbjct: 289 AGRLDTAKLGVELFRDENMDNVEAYAKILVDLNEKRKKLTEDGFNKAVEIIENTALKNDD 348 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDAL 412 + L H+ V GI+A RIKE++++P + + + LKGSGRSI ++ + Sbjct: 349 I---LICNVEGIHESVCGIIAGRIKEKYNKPTLILTESANKNLLKGSGRSISEYNIFEEF 405 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 + M + FGGH MA GLS+E++K F+ + + L +++ D Sbjct: 406 DEFRE----MFVSFGGHPMACGLSIEKNKLDEFRTKVNK--NSKLTEEDFVKKILIDSSF 459 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLD 531 ++ ++ + + + P+G+ P P+ D ++ +++G+ + ++ + +D Sbjct: 460 YIDKIDFDLIEEIGNLRPFGKDNPRPILGDKDVEIIFAKMIGKNQNVLKMKLLKNNKAID 519 Query: 532 GIAFN-----------------VDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 I F + + + + Y +IN+F +++Q+ + ++ Sbjct: 520 AILFTDAIEKYTYLLGKFGENVLKELENSISCNAYIDILYYPEINDFNNVKNIQLNLIDL 579 Query: 575 W 575 Sbjct: 580 R 580 >UniRef50_C1F3K9 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3K9_ACIC5 Length = 592 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 186/566 (32%), Positives = 285/566 (50%), Gaps = 28/566 (4%) Query: 23 PPLLRRLYASRGVRSAQELE----RSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVG 78 P L+ L A+RG SA+ S+ +L + G+ +AV + A +++ G Sbjct: 39 PLLIAELLAARGASSAEAARAFLAPSLDDLLDPYSMRGMAEAVARIEQAAARHETMLIYG 98 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DG T+T L A+ LG + + + VP+R +GYG+ E+++ A A G +L+++VD Sbjct: 99 DYDVDGTTATVLLKTAIERLGGT-VRFHVPHRLREGYGMQREILESAAADGVRLVISVDT 157 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGD--TLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 GI + A E A LG+ +IVTDHHLP D +P A A++NPN C + K L G GVAF Sbjct: 158 GIRAFAAAEAAAELGLDLIVTDHHLPEDGTGIPRALAVLNPNQPGCEYACKYLCGAGVAF 217 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L AL L Q R +P+ L ++A+ TVAD VPL NR + G++ +R Sbjct: 218 KLSQAL---LEKQDRTLARTKILPS---FLKMLAIATVADAVPLLGENRTIVSIGLAELR 271 Query: 257 AGKCRPGIKALLEVANRDA--QKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 G++ALL A D + + A+D+ F L PR+NAAGR+D S V L + Sbjct: 272 R-PVNAGLRALLTEAKLDPARKAITATDVAFRLAPRINAAGRMDIASEVVELFTTRDPQR 330 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILA 374 AR LA +L+ LNQ R+ E + + E+L + M WH+GV+GILA Sbjct: 331 ARDLAAKLEQLNQDRRATEAAILER---ILERLAEPHFAEARCIVMDGEGWHRGVLGILA 387 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 SRI ++ +P + + DG GSGRSI G H+ +ALE L+ KFGGHA A G Sbjct: 388 SRILDQTGKPALVISH-EDGEAHGSGRSITGYHLLEALESCHDLF----TKFGGHAHAVG 442 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 S+ ++ + R E E + L G +V L+ +T LR P+G Sbjct: 443 FSMPSERVPELRARLVEHAAERITEQDLGGPLVCHAELALDHITAAAFSWLRRLEPFGMG 502 Query: 495 FPEPLFDGH-FRLL-QQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVRE--V 550 EP+F RL R + E+H+++ + G + + ++ + + + Sbjct: 503 NEEPVFVARKVRLAGPVRTMKEKHVRLSLSHGPRGVRISALGWHWAERVAALGIQEDDLL 562 Query: 551 QLAYKLDINEFRGNRSLQIIIDNIWP 576 +AY+L NE L++ I ++ P Sbjct: 563 NIAYRLRENEHPEYGGLELEIVDLQP 588 >UniRef50_C7MMI3 Single-stranded-DNA-specific exonuclease RecJ n=4 Tax=Coriobacteriaceae RepID=C7MMI3_CRYCD Length = 1134 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 169/579 (29%), Positives = 283/579 (48%), Gaps = 30/579 (5%) Query: 5 IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEK 59 I E LP + +RG+ S QE ++ L + G+++ Sbjct: 24 IHEADPAATEVLCKTLGLPRFIAATLVARGISSPQEAGEFLRPSLARDWGNPYCIPGMDE 83 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 V L A R G RI+V GDFD DG +STA+ +R LG + + +P R ++GYG++ Sbjct: 84 VVGGLEAAVRSGKRIMVFGDFDLDGISSTAVLTRGLRELGGEVVPF-IPRRQDEGYGITE 142 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 +++ L+VTVD GI+ V ++ G+ V +TDHH P D +P + +P + Sbjct: 143 AAIERLMKDEPDLLVTVDCGIACRNEVRLLKNRGVDVFITDHHEPADLVPEEVPVCDPKI 202 Query: 180 -RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 DC+ LAGVGVA L+ AL + E DL LGT+AD++ Sbjct: 203 DPDCS--ESILAGVGVALKLIQALGARFGQPHLW----------REYTDLATLGTIADLM 250 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 P+ +NR L G++ + RP I ALL A + ++++ L F++ PRLNAAGR+ Sbjct: 251 PMQQDNRALVADGVAHMNESP-RPCIAALLHSAGVADKPVSSTSLSFSVIPRLNAAGRMG 309 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 D + + LLL D+ A+ +A +L+A+N R+ IE + A +++ + + L Sbjct: 310 DAMLALNLLLEDDAHRAQDIAADLEAVNSQRRAIEAELAEIATLQAQEIYQGQ----RAL 365 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + WH+GV GI+ASR+ + P I FA +G +GSGRS+ +++ A+E Sbjct: 366 IVAGEGWHEGVKGIVASRLARSYGVPTILFAIDEEGIARGSGRSVGSVNLFKAVESCSD- 424 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 M+++FGGH A G++L F +R + + LD + + D ++ E+T Sbjct: 425 ---MLIRFGGHEAAVGVTLSAADLPAFTKRLCAFM-DGLDKNCFHPRIDIDACVNLDELT 480 Query: 479 MEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 +E + L P+GQ +P + + L + R VG G + GI F+ Sbjct: 481 VENVEALEQLAPFGQGNRQPTYLAQNVMLTRSRAVGADKNHFSTVLTDGAHTVSGIMFHC 540 Query: 538 DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + V +++ ++E+RG RS++ ++ +I+P Sbjct: 541 AYIDRLMHCDSVVNAGFEVQVDEWRGRRSVKAMLSSIYP 579 >UniRef50_Q0C0S5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C0S5_HYPNA Length = 597 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 185/561 (32%), Positives = 279/561 (49%), Gaps = 21/561 (3%) Query: 23 PPLLRRLYASRGVR---SAQELERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVVG 78 L+ RL A RGV + L +++ + P + ++KA I+ +A G R+ V Sbjct: 44 SDLVARLLAGRGVTPETAPSYLAPTLRDLFPDPSLFADMDKAAGIILDAIVAGKRVCVFA 103 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DG TS+A+ R+ G + VP+R E+GYG SPE A+G L++TVD Sbjct: 104 DYDVDGGTSSAILARYFRAWG-RELGLYVPDRLEEGYGPSPEAFRWLKAQGYDLVITVDC 162 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 G ++ ++ A S+ +PV+V DHHL LP A++NPN DC LA GV F Sbjct: 163 GAAAVRALDEAVSIDLPVVVLDHHLMSGHLPETAALVNPNRPDCTSGQGHLAAAGVVFVF 222 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 A+ R + + P++ LDL ALGT+ D+ PL NR QG++ + G Sbjct: 223 AAAMNRLARQRNIAPPAGL--PDILPYLDLCALGTLCDMSPLTGVNRAFVRQGLTIMSRG 280 Query: 259 KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVL 318 + G++AL +V+ + + F LGPRLNA GR+ D + LL D+ GEA L Sbjct: 281 E-NVGLRALADVSGI-GEIDSVYHATFLLGPRLNAGGRVGDPWLAAKLLATDDRGEAIAL 338 Query: 319 ANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIK 378 A L LN R+ +E +Q EA E+ + + G + WH GV+GI+A R+K Sbjct: 339 AERLHTLNDERRAVEAAIQDEATAQAER-ALAANPDRGIIIAAGEGWHPGVIGIVAGRLK 397 Query: 379 ERFHRPVIAFAPAGDG---TLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGL 435 +RFH P I G+G KGSGRS+ G+++ DA+ G++L GGHAMA GL Sbjct: 398 DRFHLPTIIIGW-GEGLGPVAKGSGRSVTGVNLGDAISAAAR--EGIILSGGGHAMAGGL 454 Query: 436 SLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMF 495 SLE + F + ++ ++ D LSP T ++ L+ GP+G Sbjct: 455 SLEPHQIAAFDDWMVAHMAQFTAERDAALDLHIDAVLSPGSATTDLYDLIAALGPFGMGA 514 Query: 496 PEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD--NGVREVQL 552 PEP+F R +G HL+ E G ++ IA+ V D + V L Sbjct: 515 PEPVFAMTDVMPTGVRRIGANHLRFTAENNTG--RIECIAWRVADEPMGDLLRTGQRVGL 572 Query: 553 AYKLDINEFRGNRSLQIIIDN 573 A +L +++ G R +Q+ I + Sbjct: 573 AGRLKSDQWNGRRRVQLEILD 593 >UniRef50_Q137L0 Exonuclease RecJ n=91 Tax=Alphaproteobacteria RepID=Q137L0_RHOPS Length = 633 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 188/572 (32%), Positives = 298/572 (52%), Gaps = 19/572 (3%) Query: 13 DETADLPAELPPLLRRLYASRGVR---SAQELERSVKGMLP-WQQLSGVEKAVEILYNAF 68 + +LP +L R+ A RGV L+ +++ ++P ++ +E + + +A Sbjct: 60 AQAIAQRYQLPEMLARVIAGRGVEIDAVPDFLDPTIRKLMPDPSSVTQMEAGAQRIADAA 119 Query: 69 REGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR 128 + + + GD+D DGATS AL +R G + +P+R +GYG + + + + Sbjct: 120 MKRETVAIFGDYDVDGATSAALLTWHLRHCGLDPL-IHIPDRIFEGYGPNVDAIRGLSEK 178 Query: 129 GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKS 188 GA L++TVD G +S + AR LG+ V+V DHH GD LP EA+INPN D Sbjct: 179 GATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQCGDELPEVEALINPNRPDDLSGLGH 238 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 LA VG+ ++A+ LR +G++ + PNL ++L VALGTVADV PL NR Sbjct: 239 LAAVGLVMMTLVAVNRELRHRGFWTVE-LPEPNLLDMLHHVALGTVADVAPLIGLNRAFV 297 Query: 249 WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 308 +G+ +R + G AL++VA + LGF LGPR+NA GR+ +GV LLL Sbjct: 298 AKGLIALRR-RDHVGHTALMDVARLNGPP-DVFHLGFMLGPRINAGGRIGRADLGVRLLL 355 Query: 309 CDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQG 368 ++ EA +A ELD LN R+ I + M + + WH G Sbjct: 356 EGDVSEAARIAAELDRLNTERRVI-EQMAEAQAEAEAMASLGLEDKGAVIVTASEGWHPG 414 Query: 369 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGG 428 VVG++ASR+KE+F RP A A G GSGRSI G+ + A+ + G+++K GG Sbjct: 415 VVGLVASRLKEKFGRPAFAIALEPGGIGTGSGRSIGGVDLGRAVR--RAVSEGLLMKGGG 472 Query: 429 HAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 HAMAAG++L +++ F+ + + S E++ DG +S +T E A L A Sbjct: 473 HAMAAGVTLRKERLAEFRGWLETALAADVAKSRHINELLIDGAVSARGVTTEFAATLNRA 532 Query: 489 GPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN-----VDTALW 542 GP+G PEP+ +L+ VG+ HL++ + G G +++GIAF + AL Sbjct: 533 GPFGAGNPEPVIALPAHQLIYADEVGQAHLRLRFK-SGDGAIVNGIAFRSVGQKLGQALT 591 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + G + + +A L I+ ++G +Q+ + ++ Sbjct: 592 ENRG-QSLHVAGSLSIDRWQGAERVQLRVIDV 622 >UniRef50_B0NCG3 Putative uncharacterized protein n=9 Tax=Clostridiales RepID=B0NCG3_EUBSP Length = 586 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 179/608 (29%), Positives = 308/608 (50%), Gaps = 55/608 (9%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 M+Q + LR+ E ++ P L L +R V + + + + G + + Sbjct: 1 MEQWVLLRKGADFEGIGKRFQISPRLACLIRNRDVIGDEAIAQYLNGTIADLYDGMLMKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV+IL E RI V+GD+D DG +T + + + LG + D +P+R +DGYG Sbjct: 61 MDKAVDILREKIAEQKRIRVIGDYDIDGVNATYILLEGLEKLG-AEADSDIPSRMKDGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT--------- 167 L+ E++++A+ G I+T DNGI++ + + LG+ ++VTDHH Sbjct: 120 LNIELIERAYQDGIDTIITCDNGIAAAEEIACGKRLGMTIVVTDHHEVPFEEEEDGKKYL 179 Query: 168 LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLD 227 LP A+A+I+P C +P K L G +A+ L+ AL ++ +L L++ Sbjct: 180 LPPADAVIDPKQPGCEYPFKGLCGAAIAYKLVEAL---------WEATGGDAEDLDYLIE 230 Query: 228 LVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFAL 287 VA+ TV DV+ L+ NRI +G+ ++ PG+++L+ D ++ A +GF L Sbjct: 231 NVAIATVGDVMELENENRIFVKEGLQMLKRTHS-PGLRSLIACTGVDKDRIGAYHIGFVL 289 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 GP +NA+GRLD + LL + EA +LA +L ALN +RKE+ +A + + Sbjct: 290 GPCMNASGRLDTAKRTLNLLRAKSGKEADILAGDLKALNDSRKEMTDIAVEQARQIVDTT 349 Query: 348 ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLH 407 + +D + L +Y P H+ + GI+A RI+ER++RP I A +G +KGSGRSI+ + Sbjct: 350 KAGKDRV---LVLYLPGCHESLAGIVAGRIRERYYRPAIILTDAEEG-IKGSGRSIEAYN 405 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 M + L R L + KFGGH +AAG+SL ++ + ++ + L+P + +VV Sbjct: 406 MYEELSRCRDL----LTKFGGHKLAAGMSLAKENIEELRRTLNDNCR--LEPKDMAEKVV 459 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERH--LKVMVEPV 524 D L + +T E+ + L P+G+ +P+F + L+ R++G+ LK+ V+ Sbjct: 460 IDMELPFSCVTEELVEELTLLEPFGKGNTKPVFAARNVELISGRILGKNRNVLKLQVKD- 518 Query: 525 GGGPLLDGIAFNVDTALWPD-----------------NGVREVQLAYKLDINEFRGNRSL 567 + + F + G ++ + Y DINE+ G R++ Sbjct: 519 SSQTAREAVCFRGAEQMLSLLEERYGKEAVDLLMKGRGGQMKLSVTYYPDINEYMGKRTV 578 Query: 568 QIIIDNIW 575 QI+I + Sbjct: 579 QIVITHYQ 586 >UniRef50_A8UBS7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Carnobacterium sp. AT7 RepID=A8UBS7_9LACT Length = 699 Score = 537 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 170/493 (34%), Positives = 247/493 (50%), Gaps = 27/493 (5%) Query: 84 GATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSH 143 G TSTA+ + +G ++Y +PNRF DGYG + ++ +G QLI+T DNG+S H Sbjct: 17 GVTSTAVLKETIEMIG-GEVNYYIPNRFTDGYGPNTAAFERLIEQGTQLILTCDNGVSGH 75 Query: 144 AGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALR 203 ++ A+SLGI VI+TDHH DTLP A A+I+P ++P LAGVGVAF L AL Sbjct: 76 TAIDRAKSLGIDVIITDHHELPDTLPDAYAVIHPRHPKGSYPFGELAGVGVAFKLATALL 135 Query: 204 TFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPG 263 + ELLDLVALGT+AD+V L NR L QG+ ++ + R G Sbjct: 136 GEIP---------------IELLDLVALGTIADLVLLTNENRALVKQGLLVLKNTQ-RMG 179 Query: 264 IKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELD 323 + AL + A +++ +GF + PRLNA GRL D + V LL + A LA + Sbjct: 180 LTALFKSAKIKREEIDEETIGFIIAPRLNAVGRLGDAAPAVELLTTFDDETALALAQLVQ 239 Query: 324 ALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHR 383 N R+ + EA + EKL + D + WH+GV+GI+AS+I + + Sbjct: 240 EKNTERQAYVSTITNEAFEMIEKLPTASD----VYVLAKEGWHEGVLGIVASKIVGKTGK 295 Query: 384 PVIAFAPAG-DGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKF 442 P + G KGSGRSI H+ +AL+ + L FGGH MAAGL++ + Sbjct: 296 PTLVMTIDNAKGLAKGSGRSIAAFHLYNALDSVRQLT----TTFGGHHMAAGLTVPIENI 351 Query: 443 KLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD- 501 L Q E L E+ DG L E T+EV + L P+G +PLF Sbjct: 352 ALIQDNLNHYAAETGLSEELGEEIQVDGQLKIQEATVEVVEELNRLAPFGTDNLKPLFLF 411 Query: 502 GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEF 561 + R +G + ++ V LD I F + +V + KL INE+ Sbjct: 412 KNVESQDVRRIGGDQAHLKMKLVEDNAFLDVIGFQFGSVADEIGLYSDVSVVGKLAINEW 471 Query: 562 RGNRSLQIIIDNI 574 G+R Q++++++ Sbjct: 472 NGSRKTQLMLEDL 484 >UniRef50_UPI0001BC5E35 single-stranded-DNA-specific exonuclease recJ n=3 Tax=Fusobacterium RepID=UPI0001BC5E35 Length = 842 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 167/566 (29%), Positives = 290/566 (51%), Gaps = 33/566 (5%) Query: 16 ADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRII 75 + + ++ + R + +E L ++KAV +L A ++ + Sbjct: 16 QEKEETIHSIVYSIMKERNLSYRKEF------TSNPYLLKDMDKAVHLLQEAKKKQQTVW 69 Query: 76 VVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVT 135 + GD+D DG TS +L LA+ LG ++Y +P R ++GYGL+ E + + +G ++++T Sbjct: 70 IYGDYDVDGITSVSLCYLALTELGYP-VEYYIPLR-DEGYGLNQEALQYIYEQGGRIVIT 127 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVA 195 VD GI S V+ A SLG+ +I+TDHH LP A A+INP + +P SLAGVG A Sbjct: 128 VDCGIVSVKEVDFANSLGMTMIITDHHEIQGELPKAAAVINPKREENLYPFPSLAGVGTA 187 Query: 196 FYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 F+L+ AL E+ + + D+VALGTVAD+VPL +NRIL QG++ + Sbjct: 188 FFLVTALF----------EQEGKREEIQKYFDIVALGTVADIVPLVEDNRILVQQGLALL 237 Query: 256 RAGKCRPGIKALLEVA--NRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIG 313 + G++ L++ + + ++ +A D+GF L P NAAGRL+D V L L + Sbjct: 238 AKSQW-TGLRILVKRLFPDYETRRFSAYDIGFILAPIFNAAGRLEDAKSSVKLFLEKDSK 296 Query: 314 EARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGIL 373 +A + L N R+ +++ + L E++++ + L + +H GV+GI+ Sbjct: 297 KANAQIDSLIQNNMERRRVQEKILQACL---EEIQQKKLEEKNALVIAREGFHHGVIGIV 353 Query: 374 ASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMA 432 AS++ +RF++P I +G S RSI G+++ +AL + L +L++GGH+ A Sbjct: 354 ASKLVDRFYKPSIVMEIKPEEGIATASCRSISGINIVEALGEISPL----LLRYGGHSGA 409 Query: 433 AGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWG 492 AG S+ + F + F ++++ + LL ++ L P ++ + +R P+G Sbjct: 410 AGFSILIENISTFYEEFEKVLSRKVTEELLAKKLSITKELLPFQIQYPLLHDMRYLEPFG 469 Query: 493 QMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVRE 549 P P+F H RL + RL+G ++HL + G + + F +E Sbjct: 470 ASNPAPIFALKHCRLDKIRLIGADKKHLMCNIHH-GDTVFWNCVWFQASDVYEELLFAKE 528 Query: 550 VQLAYKLDINEFRGNRSLQIIIDNIW 575 V +A+ L + +RG +I I++I Sbjct: 529 VDIAFHLKLEMYRGRYQYKIFIEDIQ 554 >UniRef50_C0GFY2 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFY2_9FIRM Length = 788 Score = 536 bits (1381), Expect = e-151, Method: Composition-based stats. Identities = 187/573 (32%), Positives = 285/573 (49%), Gaps = 31/573 (5%) Query: 8 RRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSGVEKAVEI 63 + + L L RGV + + + G L +++G+ KA E Sbjct: 12 EKNPAVQQLAEALGLHRLTAACLTQRGVTTTEAARLFLAGSLSDLGDPFKMAGMAKAAER 71 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 L A RE +++ GD+DADG TSTAL + ++ L S ++Y +P+R DGYGL V++ Sbjct: 72 LALAVREREPVLIYGDYDADGVTSTALLMAVLQKLEVS-VEYYIPSRLGDGYGLHGSVLE 130 Query: 124 QAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 + RG +L VTVD GI+S A +E A+ LG+ +IVTDHH D A A++NP +C Sbjct: 131 EFAGRGGKLAVTVDCGINSFAEMELAKELGLDLIVTDHHECFDGQRNAFAVLNPKQEECG 190 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 + ++LAGVGVA+ L AL + L + AE LDLVA+G++ADVVPL Sbjct: 191 YSERNLAGVGVAWNLARALHSLL---------GVPFAETAEYLDLVAVGSIADVVPLLGE 241 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NRIL G+ ++ + RPG+ AL V N QKL+A+ + F L PRLNA GRL D + Sbjct: 242 NRILVKYGLEKLSE-RPRPGLAALARVGNVGEQKLSATQVAFVLAPRLNAPGRLGDAAPA 300 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 V L + +A LA+ELD N+ R+++E+ + + + L ++ Sbjct: 301 VET-LLADEADAEALAHELDEKNRQRQQVEKDILA-----EARELAAAQADKPALVLWRD 354 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMM 423 WH GVVGI+A R+ F +P A G GS RS+ G + DAL+ + Sbjct: 355 TWHPGVVGIVAGRLASEFAKPSALVAVDGT-QGNGSIRSVPGCDVVDALQACTE----HL 409 Query: 424 LKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483 +FGGH AAGL+++ + F++ F V + +V ++ L+ +E+ + Sbjct: 410 ARFGGHPEAAGLTVDTQCLEAFREAFCRAVATQKTKEEQRQQVAAEAVLAELS--LELVE 467 Query: 484 LLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALW 542 L P+GQ PEPLF + R VG + ++ GGP+ GI F A Sbjct: 468 ELAALEPFGQGNPEPLFLVRDVEVAAARRVGNNGKHLQMKLKNGGPVYAGICFGGGEA-- 525 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 +V N ++G SL + + ++ Sbjct: 526 DIARGMQVDAVVFPTTNTWQGRTSLSLHVRDVR 558 >UniRef50_A8F1S2 Single-stranded-DNA-specific exonuclease RecJ n=18 Tax=cellular organisms RepID=A8F1S2_RICM5 Length = 608 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 187/585 (31%), Positives = 286/585 (48%), Gaps = 26/585 (4%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV-----KGMLPWQQLSGV 57 Q +L ++ ++ LL R+ + R V + +E+E + + L + Sbjct: 33 WQQKLINEDIVTELCRSFKISDLLARIVSLR-VNNLEEVENFLIPKIKNLLPDPFHLLDM 91 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 EKAV+ A +I + D+D DGATS AL R L D VP+R +GYG Sbjct: 92 EKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILC-DIYVPDRIAEGYGP 150 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 +P + + G +L++TVD G +H +++A+ + + VIV DHH+ + LP A AI+NP Sbjct: 151 TPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILPDAVAIVNP 210 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 N D K LA VGVAF A+ + L+ Q +F + + PNL + LDLVALGTV D+ Sbjct: 211 NRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTML-QPNLMKYLDLVALGTVCDM 269 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 + L NR G+ ++ + GIK L ++A + LGF LGPR+NA GR+ Sbjct: 270 MKLTGLNRAFVASGLKIMQQ-RQNIGIKTLYDMAGLNEIP-KCYHLGFILGPRINAGGRV 327 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 S+G LL EA LA EL+ N RK IE M EA+ + + S Sbjct: 328 GKSSLGANLLSTSCSNEANKLAEELEKHNNERKVIELLMIEEAMEIALTQQDS-----SL 382 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 L + WH GV+GI+A ++KE+F +PV A DG K S RSI G+ + ++ Sbjct: 383 LFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIA-LNDGIGKASCRSILGIDFGAEI--INA 439 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 +++ GGHAMAAG ++ DK + Q F ++ D L+ + Sbjct: 440 KSKDLLIAGGGHAMAAGFTVTADKLQELQNFFNNAFRISINKLENYKHAEYDIELTVNSV 499 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVG---GGPLLDGI 533 + + L P+GQ EP+F +L+ +VG +H+K M+ P G L I Sbjct: 500 NFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALSAI 559 Query: 534 AFNVDTALWPD----NGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 AFN + D + + + L N ++GN ++Q+II +I Sbjct: 560 AFNSVGTAFEDVLLSSKAKNIAAIGTLKTNNWQGNYTIQLIIKDI 604 >UniRef50_C2KX60 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Oribacterium sinus F0268 RepID=C2KX60_9FIRM Length = 571 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 158/589 (26%), Positives = 289/589 (49%), Gaps = 36/589 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG--MLPWQQLSGVE 58 MK+ ++ + L P+L R+ +R + + +E+ ++G + L Sbjct: 1 MKKWFVYGKKADFQELGEKLSLDPVLVRILRNRDLTTEEEMRNFLEGEEIPSPLFLPDSI 60 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMR-SLGCSNIDYLVPNRFEDGYGL 117 + + L A +EG ++ +VGD+D DG ++ + A+ + ++P+R DGYG+ Sbjct: 61 RFLNRLERAMKEGEKVRIVGDYDVDGVCASTILAKALSLFFSKEQLSVVIPHRILDGYGI 120 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP------GDTLPAA 171 + +++++A A G L++T DNGIS+ + +E A+S G+ V++TDHH +P A Sbjct: 121 NEQIIEEAKAEGISLLITCDNGISAFSAMEKAKSYGMDVLLTDHHDLRRDEDGKKRIPEA 180 Query: 172 EAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 A++NP +P++ + G V + LM L ++R + L EL + Sbjct: 181 FAVVNPKREGSKYPNEEICGAMVCYLLMKML---------LEKRQKGLELLEELACFAGI 231 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVAN-RDAQKLAASDLGFALGPR 290 TV DV+PL NR++ ++ ++ + G++ALL+ + Q++++ LGF +GP Sbjct: 232 ATVCDVMPLQKENRVIVKYCLTHLQKTQ-NIGMQALLKQCHILPEQEISSYTLGFQIGPC 290 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NA GRL+ + ++L L ++ G+A A L LN+ RKE+ + EA L E+ Sbjct: 291 INAGGRLESAMLALSLFLEEDEGKAEEKAAHLLVLNEERKEMTKKGVDEAKALAEQ---- 346 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRD 410 + L + P+ H+ + GI+A RI+E ++RP DG+ K SGRSI G M + Sbjct: 347 -EGDVPLLFLVLPDLHESLAGIVAGRIREAYYRPCFILTNGEDGSCKASGRSIPGYPMAE 405 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 LE L +L+FGGH MAAG S+ ++ ++ + L L+ +V D Sbjct: 406 RLEEQKEL----LLRFGGHPMAAGFSVTKENVPGLKKALLQNAR--LQAEDLEEKVWIDV 459 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ-RLVGERH--LKVMVEPVGGG 527 L + + + + L P+G+ +P F LL+ ++VG+ +K+ +E G Sbjct: 460 VLPFSYLKEDFVRSLSRLEPFGRGNEKPAFAQKNVLLKDFKIVGKNKNAIKLYLEDEQ-G 518 Query: 528 PLLDGIAFNVDTALWPDNGVR-EVQLAYKLDINEFRGNRSLQIIIDNIW 575 ++G+ F R + L Y I + + LQ+++ + Sbjct: 519 TRVEGVLFEDGEKFLNKKSSRNKFNLLYYPKIQVYNNIKQLQVVVSEYF 567 >UniRef50_A5EVF0 DNA exonuclease RecJ n=2 Tax=Cardiobacteriaceae RepID=A5EVF0_DICNV Length = 556 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 190/554 (34%), Positives = 300/554 (54%), Gaps = 20/554 (3%) Query: 19 PAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVG 78 P + L+R +YA+R V + +E+ + ++ +LP + +EKA + L A + I++ G Sbjct: 16 PKDWHALVRAIYAAR-VDNPEEVAKPLRALLPPDSVPDIEKAAQRLLTAIVQRESILIFG 74 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DGAT+TAL V + LG +DY +PNR GYGL+ + L++TVDN Sbjct: 75 DYDVDGATATALCVSVIEQLG-GKVDYFIPNRQRHGYGLTVRGLKTLSTL-PALVITVDN 132 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 GI S E ++ + +++TDHH TLP A+A++NPN ++ ++ +L+GVGVAFY+ Sbjct: 133 GIRSFEAAEWLQAHNVALVITDHHQTDTTLPRAQAVVNPNRQEHHY-LGNLSGVGVAFYV 191 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 +L LR W+ + +L LDLVALGTVAD VPLD NNRIL G++R+R G Sbjct: 192 LLMLRRL-----WYQQFGNFPVDLNSYLDLVALGTVADKVPLDRNNRILVAHGIARMRTG 246 Query: 259 KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVL 318 + GI+AL+ V+N+ + + D+ F+L P LNA GRL +MS GVALLL + A Sbjct: 247 QSNLGIQALIAVSNQTPEMMTTRDIDFSLAPILNAVGRLSEMSEGVALLLSADWQTACDN 306 Query: 319 ANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIK 378 A L+ N++RK + M+ +A L+ + D + Y +WH+G++GI+A+R+ Sbjct: 307 AQYLERFNRSRKALTNEMERQA-----ALQINPDAVIAS--AYQADWHEGIIGIVAARLS 359 Query: 379 ERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 + RP + + DG +KGS RSI G+ + L P ++FGGHAMAAG ++ Sbjct: 360 QTLARPALVATQSDDGLGIKGSMRSIAGVDIHRLLIAAVADLPSDCIQFGGHAMAAGFTV 419 Query: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 ++ + L + + + + + D L + + A L + PWG FP Sbjct: 420 LKECYPLLLTALKQHFERQIGARVPEQPLYFDAELPIDLLQLSWAHFLENLEPWGAGFPP 479 Query: 498 PLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLD 557 P F F + R +G H ++++ G L D F L V++ Y+L+ Sbjct: 480 PQFCNRFIVADCRALGAGHTRLVLREPINGQLFDATWFFHKEDL---PSGTAVKVVYQLE 536 Query: 558 INEFRGNRSLQIII 571 IN F G+ L ++I Sbjct: 537 INRFFGDERLNLLI 550 >UniRef50_Q1GEL8 Single-stranded-DNA-specific exonuclease RecJ n=45 Tax=Alphaproteobacteria RepID=Q1GEL8_SILST Length = 603 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 193/570 (33%), Positives = 295/570 (51%), Gaps = 28/570 (4%) Query: 13 DETADLPAELPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSGVEKAVEILYNAF 68 E LPP + ++ A RGV + + L +K +LP +++ +E A A Sbjct: 49 SEHLAQETGLPPAVCQVLARRGVPAHEATGFLTPQLKDLLPDPRRMKDMETAAARFLQAV 108 Query: 69 REGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR 128 RI + D+D DG +S AL ++ +R +G +P+R ++GYG + + A AR Sbjct: 109 ERRERIAIFADYDVDGGSSAALLLVYLRQMG-QQATLYIPDRIDEGYGPNDAAM-AALAR 166 Query: 129 GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKS 188 LI+ VD G SH + A+ G V+V DHHL G+TLP A++NPN +D + Sbjct: 167 DHDLIICVDCGTLSHGPIAAAK--GADVVVLDHHLGGETLPDCVAVVNPNRQDEDGDLGY 224 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 GV F +++ +R RD+G A P+L +LDLVAL TVADV PL NR L Sbjct: 225 FCAAGVVFLMLVEVRRQARDKGL-----GAGPDLMAMLDLVALATVADVAPLIGANRALV 279 Query: 249 WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 308 QG+ + + RPG+ AL +V+ DA + LGF LGPR+NA GR+ +G LL Sbjct: 280 RQGLKVMGR-RQRPGLVALADVSRMDAAP-STYHLGFLLGPRVNAGGRIGKADLGARLLS 337 Query: 309 CDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQG 368 D+ EA L+ LD LN R++IE ++ AL E + WH G Sbjct: 338 TDDPHEAAALSERLDQLNTERRDIENAVRAAALEQAEARGFDAPLVWA----AGEGWHPG 393 Query: 369 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGG 428 VVGI+ASR+KE RP + G+ KGSGRS+ G+ + +++++ G++LK GG Sbjct: 394 VVGIVASRLKEATGRPAVVIGLDGE-EGKGSGRSVSGIDLGASIQKVA--MEGLLLKGGG 450 Query: 429 HAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 H MAAGL++ + + R EL+ + L ++ DG L P ++E+ + + A Sbjct: 451 HKMAAGLTVARGQLEPAMARLAELLDKQGAGDLGPADLKLDGMLMPGAASVELIEQIEQA 510 Query: 489 GPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV-DTALWP--- 543 GP+G P P + + + VGE HLKV GG +D IAF DT L P Sbjct: 511 GPFGAGAPAPRYGFPDVAVRFAKRVGESHLKVSFTDGMGGN-IDAIAFGAFDTNLGPRLL 569 Query: 544 DNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 ++G ++ +L++N + G +S Q+ +++ Sbjct: 570 EHGGARFHVSGRLEVNTWGGRQSAQLRLED 599 >UniRef50_A8SN06 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SN06_9FIRM Length = 581 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 181/603 (30%), Positives = 282/603 (46%), Gaps = 50/603 (8%) Query: 1 MKQQ-IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQ---ELERSVKGMLPWQQLSG 56 MK+ I+ E +E + +L A+R + L + K + + Sbjct: 1 MKKWFIKSDNGLTKENFKNNSEFSYITCQLLANRKIDYKNVRNFLYPNYKYLHNPFLMKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++ A+EIL +A I +VGD+D DG +ST + + + NI + +P+R EDGYG Sbjct: 61 LDTAIEILVDAIDNNLHIQIVGDYDQDGNSSTVVLMKGI-GFFTDNISFSIPHRIEDGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP------GDTLPA 170 +S +VD A LI+T DNGIS+ E+ S+ I +I+TDHH LP Sbjct: 120 ISKGIVDNAKKNNVDLIITCDNGISAFEVAEYCNSMNIQMIITDHHQVCFDDKGNQILPK 179 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A+AIINP+ DC +P K L G GVAF LM AL FDE L +LL V+ Sbjct: 180 AKAIINPHRIDCEYPFKELCGAGVAFKLMQAL---------FDELGGDENYLIDLLQFVS 230 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPR 290 +GTV DVV L NR +G+ + + K GI L + K+ + LGF LGP Sbjct: 231 MGTVCDVVDLVDENRFFVKKGLEILNSSK-NIGINKLKTEN--EIGKITTTSLGFKLGPC 287 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NAAGRL+ S+GV L L ++ A A +L LN+ RK + ++ E Sbjct: 288 INAAGRLESASIGVELFLEEDENLADNYAKKLIELNEKRKNLTNEAYSRVNLKIKENEYF 347 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMR 409 D + + +Y E H+ + GI+A RIK+ +++P + F+ A +G LKGS RSI+G + Sbjct: 348 NDDI---IVIYDNEIHESIAGIVAGRIKDHYYKPTLVFSNAKEEGILKGSARSIEGYDII 404 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 L L+ + GGHAMAAG S++++ + + L ++ D Sbjct: 405 SKLRDFSNLFEKL----GGHAMAAGFSIKKENLDTLRNELNK--NSELVLENFIEKIKID 458 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGP 528 L + + L+ P+G+ PEPLF + + ++G+ + + Sbjct: 459 CSLDFKLLNYNIVDELKLLEPYGKANPEPLFGTKNVEIKCISIIGKNKNVIKLVLSQDSI 518 Query: 529 LLDGIAF-NVDTALWPDN---------------GVREVQLAYKLDINEFRGNRSLQIIID 572 GI F N D + N + + + Y INE+ +S+Q++I Sbjct: 519 EFSGIIFTNFDKYIEYLNEKFKTNDIISKQDNIKNKFIDILYTPVINEYMNTKSIQLLIK 578 Query: 573 NIW 575 +I Sbjct: 579 DIR 581 >UniRef50_B5YIG7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIG7_THEYD Length = 557 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 175/575 (30%), Positives = 287/575 (49%), Gaps = 43/575 (7%) Query: 10 REVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLP---WQQLSGVEKAVEILYN 66 +E + + ++ S+G++ E+ + + +++G+ +A +I+ Sbjct: 13 QEYLQYISKSLNITIPTAQVLLSKGLKDIDEIYSFLNPNIDNIDPFEITGIYEATKIIDA 72 Query: 67 AFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH 126 A + T+I++ GD+DADG TSTA+ + G + + Y +P+R + GYGLS +++A Sbjct: 73 AIKSETKILINGDYDADGLTSTAILYDILIKKG-AKVFYHIPHRIQHGYGLSIRSIEEAK 131 Query: 127 ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP-----GDTLPAAEAIINPNLRD 181 GA+LI+TVD GI VE+A GI VI+TDHH P P A A+INP + Sbjct: 132 KIGAKLIITVDCGIRDFEAVEYANKEGIGVIITDHHEPLRLNEEVVTPHALAVINPKIDG 191 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 + LAGVGVAF L +AL LDLV LGT AD+VPL Sbjct: 192 KPY-YNYLAGVGVAFMLAMALSR---------------EEALGYLDLVTLGTYADMVPLI 235 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NR L G I R IK L +A ++ + L F L PR+NA GR+D Sbjct: 236 HANRTLIKHGWEMI-DSPVRNSIKMLKNIAGINSNSIRGFHLSFCLIPRINAPGRIDQAG 294 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 V L+ ++ E L+ L+ +N R++ E+ + E EKL + D P + ++ Sbjct: 295 DVVRFLISEDESELDSLSKWLNQINSMRQKTEEKIMAEVE---EKLSKEFDDEP-VIVLW 350 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 +WH GVVG +AS++ ++F+RP + G+ KGS RS G+ +++ L L Sbjct: 351 G-DWHPGVVGTVASKLMDKFNRPAFILSIQGE-KAKGSARSPAGIDLQEFLNASKDL--- 405 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 +++FGGH AAG++L +D F+++ + E + + ++ D ++ E+T +V Sbjct: 406 -LIRFGGHKQAAGMTLLKDNLYAFKEKLCLIAQEIVRDD--KNILLLDAAVNLNEVTEKV 462 Query: 482 AQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA 540 A+ + P+G+ EPLF +L R VG HLK+ + G + I F++ A Sbjct: 463 AEEISLLEPFGEGNREPLFGAKELTVLNLRKVGNNHLKMFLRQ--NGNTIGAIGFDMGDA 520 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + + A+ INE+ G +SLQ+ + + Sbjct: 521 QILEGSL--IDAAFTPSINEWEGMKSLQLQLKALR 553 >UniRef50_Q0API9 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Maricaulis maris MCS10 RepID=Q0API9_MARMM Length = 603 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 179/587 (30%), Positives = 287/587 (48%), Gaps = 28/587 (4%) Query: 3 QQIQLRRREVDETADLPAE--LPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLS 55 ++ +LR + A + + +P L R+ A+RGV + + + Sbjct: 25 KRWRLREADDGAVAMMARQQSIPDALARVMAARGVA-PDQAAAFLSPRLRDSFPDPSDFA 83 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++KA ++++A + V D+D DGATS A + R + + VP+R E+GY Sbjct: 84 DMDKAAGLVWDAIEAERPMAVFADYDVDGATSAAQLIRYFRHFDRT-AEIYVPDRVEEGY 142 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G S D ARGA+L++TVD G ++ + HA S+G+ VIV DHHL D +P A A++ Sbjct: 143 GPSGTAFDTLKARGAELVITVDCGAAARIALTHAASIGLDVIVIDHHLMDDDMPPAAALV 202 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NPN D LA GV F + AL R +G N P+L + +DL ALGT+ Sbjct: 203 NPNRPDDRSGCGHLAAAGVTFVFLAALNREGRRRGTITPDN--EPSLLDWIDLAALGTIC 260 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 DVVPL NR +T QG+ + +G G++ L E + D + + GF +GPR+NA G Sbjct: 261 DVVPLTGVNRAITAQGLKAM-SGWRHLGLRCLAETSGVDGEA-STYHAGFLIGPRINAGG 318 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ +G LL ++ AR +A ELD LN R+ IE + A + R Sbjct: 319 RVGRADLGATLLTTEDETLARRIAGELDGLNSERRAIEADVLEAASAQLDGQSADR---- 374 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG---TLKGSGRSIQGLHMRDAL 412 L WH GV+G++A R+KERF +PVI + KGSGRS+ G+++ A+ Sbjct: 375 AILIAAGEGWHPGVIGVVAGRLKERFDKPVIVIGIDREARPPVGKGSGRSVPGVNLGGAI 434 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 G++ GGHAMA GLS++ D+ E + L + + +DG L Sbjct: 435 AAARE--AGLLTSGGGHAMAGGLSMDPDRITELVAFLDERLAPELAAAADDMALKADGVL 492 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLD 531 + + +++++A++L A P+GQ EP F R+ + VG H++ + G +D Sbjct: 493 TASGVSLDLARMLERAAPFGQGNAEPRFALPDMRVSFAKRVGTDHVRFTLSDPD-GRRVD 551 Query: 532 GIAFNVDT----ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 GI F G +L ++ ++G +Q+ ++++ Sbjct: 552 GICFRCADTPIGEALLAAGPGLFHAFGRLKLDAWQGRERVQLHLEDL 598 >UniRef50_C6XKA3 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XKA3_HIRBI Length = 609 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 191/582 (32%), Positives = 287/582 (49%), Gaps = 20/582 (3%) Query: 3 QQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSG 56 ++ ++R + ++ ++ L P L+ +L A RGV + ++K + P + Sbjct: 32 RRWRVRPVDDEKATEISRRLSKPDLIGKLLAGRGVTLDEADTYFSPTLKALFPDPSSFAD 91 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++ A E++ A G + V+ D+D DG TS A+ ++ I Y VP+R +GYG Sbjct: 92 MDAACEVILEALVSGRKCAVLADYDVDGGTSAAILTKYFKAWDRELILY-VPDRLTEGYG 150 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 S E + +GA+L++TVD G ++ +E A SLG+ V+V DHHL P A A++N Sbjct: 151 PSVEAFESLKEQGAELVMTVDCGAAAVEALEAAHSLGLDVVVLDHHLMQSEPPPAAAVVN 210 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 PN DC +A GV F L L R + + P+ + LDL ALGT+ D Sbjct: 211 PNRPDCKSGCGHMAAAGVVFVLTAGLNRLARQKSVAPAGGL--PDPMKWLDLCALGTLCD 268 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 + PL NR G+ ++ G+ AL +V+ +A K + F LGPRLNA GR Sbjct: 269 MAPLKGVNRAFVNAGLKVLQRMD-NVGLAALSQVSGVEAPK-SVYHATFLLGPRLNAGGR 326 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + D + LL ++ EA LA L ALN+ RKEIE + EA + E + G Sbjct: 327 IGDPWIAAKLLATEDRKEALALAERLQALNEARKEIEAEILDEATRIAESRLVEK-PDAG 385 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD--GTLKGSGRSIQGLHMRDALER 414 + + WH GV+GI+A R+KE+FHRP I + KGSGRS+ G+++ + + + Sbjct: 386 AIVVGGEGWHPGVIGIVAGRLKEKFHRPTIVIGWGEELGPVAKGSGRSVAGVNLGNLIAK 445 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 G++L GGHAMAAGLSLE + + F+ E E + DG LSP Sbjct: 446 ASK--EGIILSGGGHAMAAGLSLEPSQLEAFRDYMEESTAEAKKELEQARVLELDGLLSP 503 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 A E+ + AGP+G PEP+F + R R VG HL + GG L I Sbjct: 504 ASADGELLLSVDGAGPYGAGSPEPIFAMANVRSHNVRRVGVDHLSFEILGEDGGK-LRAI 562 Query: 534 AFNVDTALW--PDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 AF A + + LA KL +E+RG +Q + + Sbjct: 563 AFRAADADLGQAILSGQMMHLAGKLKPDEWRGAGKVQFEVSD 604 >UniRef50_D1VS52 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS52_9FIRM Length = 598 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 172/604 (28%), Positives = 295/604 (48%), Gaps = 50/604 (8%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVE 58 ++ ++ + E + L +L R+ +RG++S +ELE+ +K + L + Sbjct: 2 EKWFIKNSKDYELSYEKYGLNKILYRILLNRGIKSDEELEKFLKPDLSNIHSPIFLKDMV 61 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 K+ I+ + +G+ I +VGD+D DG TST + ++ +G + + Y +PNR DGYG++ Sbjct: 62 KSANIIISHITKGSNIRIVGDYDVDGITSTYILYCGLKKIG-AKVSYDIPNRVLDGYGIN 120 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP---------GDTLP 169 +++D+A LI+T DNGI++ V++AR+LGI VIVTDHH P + LP Sbjct: 121 NKIIDRAKEDDISLIITCDNGIAAFEPVKYARNLGIDVIVTDHHEPAKVLIEGVLQEKLP 180 Query: 170 AAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLV 229 A +I+P + D +P K + G VAF L+ L + + + L V Sbjct: 181 DANGLIDPKVSDSKYPFKDICGACVAFKLISYL--------YLIKGKEEQEVYDDFLAYV 232 Query: 230 ALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGP 289 AL TV DV+PL NRIL G+ ++ + G+ AL+ + + + +GF +GP Sbjct: 233 ALATVCDVMPLKDENRILIHYGLEALKNVQD-VGLNALISACDIKKEDIDVYHIGFIIGP 291 Query: 290 RLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLER 349 LNA GRL V LLL + A A E+ ++N R+ I+A+ + ++ E Sbjct: 292 TLNACGRLKTAKEAVELLLEKDYNSAIEKAKEIRSINNQRQNYTNDGYIKAIKIIKEQEL 351 Query: 350 SRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMR 409 + L +Y P ++ +VGI+A RIKE+F+RP I + +G +KGSGRSI +M Sbjct: 352 LKKY--PILLIYVPNINESIVGIIAGRIKEKFYRPTIVLTDS-NGIIKGSGRSIDEYNMF 408 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 + + ++ + FGGH MA GLS++++ F F + L L ++ D Sbjct: 409 EEVN----VFRDELEAFGGHKMACGLSIKKENFNNFNLNLNKNAK--LTRDDLTKKIYID 462 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGP 528 PL+ +++ M++ Q L P+G +PLF ++ + G + + G Sbjct: 463 YPLNFSQINMKLIQDLNKLKPFGTDNEKPLFGSRNLKITDIAIFGTNKNVIKLMLEDSGV 522 Query: 529 LLDGIAFNVDTALWPD-----------------NGVREVQLAYKLDINEFRGNRSLQIII 571 + + F D N ++ + Y +D+N FRGN S+++ + Sbjct: 523 FQNALLFKDSNEFLNDLKKAYGQEAVTGLLQKSNKNIKIDVIYSIDVNNFRGNSSIELRL 582 Query: 572 DNIW 575 + Sbjct: 583 KSYR 586 >UniRef50_C6XG71 Single-stranded-DNA-specific exonuclease protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XG71_LIBAP Length = 600 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 168/565 (29%), Positives = 279/565 (49%), Gaps = 20/565 (3%) Query: 22 LPPLLRRLYASRGVR---SAQELERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVV 77 +P ++ R+ +R V + L S++ ++P L+ +KA + A +I++ Sbjct: 39 IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DGA S AL + + N + +P+R DGYG +P ++++ GAQLI+TVD Sbjct: 99 GDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 G +S+ +++A + GI VIV DHH A A++NPN D L GV F Sbjct: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 +++ + LR + L + TV DVVPL NR +G+ + Sbjct: 218 VLVLIYRILRQDNKVPLNFDLLSLLDLVALA----TVCDVVPLIGLNRAYVVKGL-MVAR 272 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 + PG+KAL+E N + + A +LG+ +GP +NA GR+ + ++G LL+ D+ E + Sbjct: 273 RQGNPGLKALIERVNISS-PITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEM 331 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 LA +LD LNQ R+ +E M +A + + + WH G+VG+LA+R+ Sbjct: 332 LAMKLDVLNQNRRLMESAMLEQAEAKVLT-QCDDIQQASVIVVEGDRWHPGIVGLLAARL 390 Query: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 KE+F RP A + DG GSGRSI+G + + + G+++K GGHAMAAGL++ Sbjct: 391 KEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF--AVEEGILVKGGGHAMAAGLTV 448 Query: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 E F F + + + DG L+ + + + + +L AGP+G P Sbjct: 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPN 508 Query: 498 PLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD----TALWPDNGVREVQL 552 P+F + +L R+V HL++ E L IAF V + + + + Sbjct: 509 PVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHV 567 Query: 553 AYKLDINEFRGNRSLQIIIDNIWPI 577 L +N +RG++ Q+ + + P+ Sbjct: 568 TGHLCVNYWRGSKRCQLRVLDASPV 592 >UniRef50_Q6MEM6 Putative ssDNA-specific exonuclease n=2 Tax=Parachlamydiaceae RepID=Q6MEM6_PARUW Length = 594 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 167/572 (29%), Positives = 287/572 (50%), Gaps = 25/572 (4%) Query: 11 EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLP----WQQLSGVEKAVEILYN 66 + E+ +L P++ ++ SRG S Q++ + LP ++ + +AVE + Sbjct: 21 ALKESIVKEFKLHPVIAQILVSRGFTSFQQIHDYLYAKLPELHDPFLMAEMPQAVERVCR 80 Query: 67 AFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH 126 A R+ I++ GD D DG T T L ++ LG +N+ + V NR L E ++ A Sbjct: 81 AIRDHENILIYGDNDVDGMTGTTLLTEFLQDLG-ANVFFYVSNRGALRQSLIVEALEYAL 139 Query: 127 ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPS 186 +L++TVD GI++ + + + VI+TDHH P D +P A +NP L + +P+ Sbjct: 140 INNCKLLITVDCGITAAVEIAKVAAQNVDVIITDHHEPTDKIPHCVATLNPKLVNNPYPN 199 Query: 187 KSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA-NNR 245 + L GVGVAF L + L +G I +L + LDLVALGT++D+ L NR Sbjct: 200 RDLTGVGVAFKLAHGITNQLTSEGKIPPSKI---DLKKYLDLVALGTISDMGSLLDTENR 256 Query: 246 ILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVA 305 IL G+ ++R GK R G+ L + + D L + + PRLN+ GR+ D GV Sbjct: 257 ILVRYGLRQLRKGK-RMGLAKLFSICDVDLNDLNTFTIASKIAPRLNSLGRIADPRKGVQ 315 Query: 306 LLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEW 365 +LL N A +A ELD N R++IE+ M + + +++ + M +W Sbjct: 316 MLLVKNADLAEKMALELDLNNIERQKIERTMSSDVDSTIQQIPAILSN--KAIVMVSDKW 373 Query: 366 HQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLK 425 H GV+ IL++RI ++++RP + A G KGS RSI+ + L+ + ++ Sbjct: 374 HPGVIAILSTRISKQYNRPTVMIAIDK-GIGKGSIRSIREFPLLPTLKECSDI----LIN 428 Query: 426 FGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLL 485 FGGH AAGL+++E+ + F+ F + L + + ++ D + +E+T + + Sbjct: 429 FGGHDFAAGLTIKEEHVEQFKNHFIASANKKLADTDVMSKLYLDAEIKFSELTFDFIESA 488 Query: 486 RDAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD 544 R P+G P+P+ + ++VG+ HLK+ +E G +L+G+A T Sbjct: 489 RLLEPYGNENPQPILYCDAWQTWPPKIVGKTHLKLYLEQ--GDRVLEGVALGKATYSQQL 546 Query: 545 NGVR-EVQLAYKLDINEFRGNRSLQIIIDNIW 575 ++++A+ IN S+Q++I + Sbjct: 547 RKKNLKLRIAFTPQIN----KSSIQLLIRDFK 574 >UniRef50_B9K8M2 Single stranded DNA-specific exonuclease n=6 Tax=Thermotogaceae RepID=B9K8M2_THENN Length = 958 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 146/542 (26%), Positives = 254/542 (46%), Gaps = 34/542 (6%) Query: 5 IQLRRRE--VDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVE 58 +L + + +L + R+ +RG+ + + + +E Sbjct: 17 WELSHPDEHAVKRISQRFDLSEIAARVLVNRGIDTEEAARSFLFTDETCQHDPFLFKDME 76 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 KAVE L EG +++ GD+D DG TS + + G +D +P+R E+GYG+ Sbjct: 77 KAVETLLQVRSEGQLVLIHGDYDVDGITSAVVLKEFLEENGW-KVDVYIPHRIEEGYGVQ 135 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 E V G +VTVD GI++ ++ A+ LG+ VIVTDHH +P A+A++NP Sbjct: 136 KENVLSFKEMGVSCLVTVDCGITAVESIDLAKRLGMRVIVTDHHEVNGDIPPADAVVNPK 195 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 + ++P + LAGVGV + L+ AL L+ P++ + L+LVALGTVAD+V Sbjct: 196 VPGEDYPFRDLAGVGVTYKLVQALAQVLK-----------YPDVEKYLELVALGTVADMV 244 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 L NR +G+ + + + +KL + D+ + + PRLNAAGR+ Sbjct: 245 SLLDENRYFVKKGIELLMKTERL---GLKKLLEKLGLKKLTSHDISYKIAPRLNAAGRMG 301 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 + LL + + L LN R+ IE+ + EA+ E + +D + + Sbjct: 302 SATDAFVLLTMKDPARTEGVVERLMELNNERRRIERQIYKEAVEKIEANDLWKDPI---I 358 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + WH GV+GI+A+++ R+ +PV + + + KGS RS G + +A Sbjct: 359 VVAGENWHVGVIGIVAAKLANRYEKPVAVVSLSDE-YAKGSIRSYNGYDIMNAF---SGD 414 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 + + GGH+ AAG SL ++ + F++ + E D +V+ D +S ++ Sbjct: 415 VLEIFDEIGGHSSAAGFSLRKEHLESFKEYMKNVALEMKDE-----KVMVDAEVSLNDVD 469 Query: 479 MEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 + ++ P+GQ PEP+ + + + GE + V + G L+ I +N Sbjct: 470 ERFIEDIQLLMPFGQGNPEPVLLFSNLLIEKIHFFGEDNSNVFLHLKDGERKLEVIGYNF 529 Query: 538 DT 539 + Sbjct: 530 KS 531 >UniRef50_Q7U6Y0 Possible single-stranded-DNA-specific exonuclease n=12 Tax=Cyanobacteria RepID=Q7U6Y0_SYNPX Length = 634 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 172/524 (32%), Positives = 263/524 (50%), Gaps = 24/524 (4%) Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 +E AVE + A +G + V GD+DADG TSTAL + A+ LG + + +P+R E Sbjct: 58 HFPDLEAAVERICRACEQGEALAVCGDYDADGMTSTALLLRALIPLG-AKAEPAIPSRME 116 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 +GYGL+P +VD+ H +G +L+VTVDNG+++ ++ AR+L + VIVTDHH + P Sbjct: 117 EGYGLNPAMVDRLHGQGIRLLVTVDNGVAAVEALQRARTLSMDVIVTDHHSIPEPRPWMT 176 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A+++P P + LAGVG+A+ L ++ L DL +G Sbjct: 177 ALLHPATTPEASPYRGLAGVGLAYVLASSVAERLGRMDAIQVAR----------DLFCIG 226 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 292 TVAD+ PL NR +G++ + +C G+ AL +A L A D+GF L PR+N Sbjct: 227 TVADMAPLTGANRRWLLEGLTTLHRSRC-EGVVALQRLAGLGETPLTAEDIGFQLAPRIN 285 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 A GRL D + V LL + G+ LA D LN+ R+++ ++ EA L E + Sbjct: 286 AVGRLGDPVLVVDLLTESDPGKTMALARRCDDLNRQRRDLCDAIEAEATALVES--DAEG 343 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 +P L + WH GV+GI+A+R+ ER+HRPV A G+G L+ S R+ QG + AL Sbjct: 344 LIPPFLLLAQSHWHHGVIGIVAARLMERYHRPVALLAGDGEGLLRASARAPQGFAVDKAL 403 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 L + +FGGH A G +++ + R +L WLD V + L Sbjct: 404 TTCADL----LERFGGHPAAGGFTVKASQVHALHDRLNQLTQPWLDQEGAGRPVRPEACL 459 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLD 531 E+ ++ L P G P PLF ++ R + HL V ++ G Sbjct: 460 KLNEINWDLWAALETLTPHGVGHPAPLFWSRGCQVADWRTLNGGHLAVTLQQ--GTHQRR 517 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 +A+ V +AY+L +N +RG R LQ+ + +I Sbjct: 518 AVAWRCSPLT---PMPERVDVAYELKLNVWRGERRLQLELKSIR 558 >UniRef50_C3CT94 Single-stranded-DNA-specific exonuclease recj n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CT94_BACTU Length = 573 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 166/582 (28%), Positives = 299/582 (51%), Gaps = 43/582 (7%) Query: 7 LRRREVDETADLPAELPPL---LRRLYASRGVRSAQELERSVK----GMLPWQQLSGVEK 59 + RR + EL L + + +RG + +++E + M Q + +K Sbjct: 16 VERRGKLQDLRNAKELNHLADCVLEILYNRGFDTIEKIESFLHMDITDMHNPQLMKDSDK 75 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 AV +L +A + I+V GD+D DG ++T+++VLA+R+LG + + Y V NRF+ GYG++ Sbjct: 76 AVSLLSHAIKNNLHIVVYGDYDCDGVSATSVAVLALRNLG-AKVSYFVNNRFKHGYGMNV 134 Query: 120 EVVDQAHAR--GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA-AEAIIN 176 ++ + +++TVDNGI ++ G++ A+ LG+ VIVTDHH PGD LP A+A++N Sbjct: 135 LGLEDMMKKYPDVDVVLTVDNGIVAYEGIKKAKELGLTVIVTDHHDPGDHLPEEADAVVN 194 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P DC +P K L G V + +ML L L + + +++D+V + TV D Sbjct: 195 PKRHDCEYPFKGLCGASVIYKVMLQLYWELDKDLDY---------VQDMIDIVGIATVGD 245 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 ++PL NR+ + + +++ + R K L E +++ GF P +NA GR Sbjct: 246 IMPLIDENRVFVTESIRQVKRAQ-RHVFKVLQEKTGV--KEITEETYGFKYVPMINALGR 302 Query: 297 L-DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 + D+ + + + + + + ++ N+ RK+I + + A+ + E+ + Sbjct: 303 ITGDVDEAIEMFVSQDEEKIPEIVEKVIETNEYRKQITEEQEALAIQMVEE-----KGIK 357 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + +YHP +H+G+VG++A R+KER+ RPVI A G G +KGS RSI H++ A + Sbjct: 358 PVIVIYHPSFHEGIVGLIAGRLKERYFRPVIVLA-EGHGFIKGSARSIPNFHIKKAFDET 416 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 ++ +GGH MA GLSL+E+ + F+++ L L + ++ D + P Sbjct: 417 KE----YLIGYGGHPMAGGLSLKEEHLEAFEEKICSLAESQLTEADFIPRIMVDTVVEPK 472 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVG--ERHLKVMVEPVGGGPLLDG 532 ++T+++ + L P+G+ F +P F F++ + +G + HLK+ L+ Sbjct: 473 DVTVDLVEELDVLKPFGEAFSKPNFGLKGFKVDKVYYMGENKNHLKLK------EKKLEI 526 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 I FN R ++ +N + N S+Q I+ I Sbjct: 527 IMFNRADIYQEMQEPRNIKALGYPSLNIWNNNVSVQFNIEGI 568 >UniRef50_D1N562 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N562_9BACT Length = 569 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 183/582 (31%), Positives = 296/582 (50%), Gaps = 28/582 (4%) Query: 3 QQIQLRRREVDETAD---LPAELPPLLRRLYASRGVRSA---QELERSVKGMLPWQQLSG 56 + +L +DE A+ LP + +A+RG+ L + + + G Sbjct: 4 KNWKLAGNNLDEQANRIQQKFSLPHPIALYFAARGIGEDNIQDFLNPRLANLTDPYRFPG 63 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++A L++A I++ GD+D DG T++AL L +R G + +P+RF+DGYG Sbjct: 64 IQEASRRLWDAIAHKEPILIHGDYDTDGITASALLALVLRQNG-GIVHSFIPHRFDDGYG 122 Query: 117 LSPEVVDQAHAR--GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 +PE + +A +++VTVD GI+S V A GI VIVTDHH G LP A A+ Sbjct: 123 FTPESLQKALDTFGPCKVLVTVDCGITSCDAVNDAVERGIDVIVTDHHEAGSELPKALAV 182 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 INP + + L+G G AF L A + R+ L E+LD VALGTV Sbjct: 183 INPKVYPELEDLQLLSGAGAAFKLSHAFIKYGREHNL----GGFQTRLEEVLDYVALGTV 238 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+VPL NR++ G+ +R + RPG++AL+E + ++ L +D+ F L PR+NAA Sbjct: 239 ADIVPLLGENRVMVKFGIETLRK-QLRPGVRALIESSKLRSE-LTPADITFRLAPRINAA 296 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ D +V + LL ++I EA A++L+ N+ R+E EQ + EA E+ + Sbjct: 297 GRVGDANVALQLLESEHIVEAYQCASQLETYNRVRQEKEQEIYQEACEQIERNLAWQS-- 354 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 L + +WHQGV+GI+ASR+ ++RP I GD GSGRSI L++ + L Sbjct: 355 EYSLLVAGRDWHQGVIGIVASRLARDYNRPTIVLTIQGD-VAYGSGRSIACLNLVEVLSH 413 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 L + ++GGH MA G+ L+ D+ F + V + + + L+ + DG S Sbjct: 414 TSEL----LDRYGGHPMAVGIGLKADRIADFFEAMDREVRKQISSADLEDFISYDGEASL 469 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 E+T E + L P+G +P++ ++ + +VG H + + G +D I Sbjct: 470 HELTPEFFKYLAMLSPFGHSNVKPIYRFNEVQVQRCSVVGGAHTRGTLRGRTGQ--IDFI 527 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 AFN ++ + + + + +N +G Q+ I +I Sbjct: 528 AFNRPSSAF---YGKTLDVLATPQLNRHQGLEIPQLNIIDIR 566 >UniRef50_C3WKI0 Single-stranded-DNA-specific exonuclease recJ n=4 Tax=Fusobacterium RepID=C3WKI0_9FUSO Length = 852 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 155/564 (27%), Positives = 274/564 (48%), Gaps = 34/564 (6%) Query: 19 PAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVG 78 +L ++ L +R L L ++ AV+ ++ A +I + G Sbjct: 24 EKKLDFVIESLIENRN------LSLDTNFDFNPFDLKDIDIAVKRIFEAIENNEKIYIYG 77 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DG TS +L LA+ LG NIDY +P R ++GYGL+ + + A L+++VD Sbjct: 78 DYDVDGITSVSLLYLALSELG-GNIDYYIPLR-DEGYGLNKDAIQSLKEEEANLVISVDC 135 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 GI+S + A LG+ I+TDHH LP A A+INP + + K LAGVG AF L Sbjct: 136 GINSIEEINFANELGLDFIITDHHEIIGDLPKAFAVINPKREENIYSYKYLAGVGTAFML 195 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 + AL + L +L + LD+VA+GTVAD+VPL ++NR +G+ + Sbjct: 196 VYALYSKLDRLN----------DLEKFLDIVAIGTVADIVPLTSDNRKFVKRGLKLLNNT 245 Query: 259 KCRPGIKALLEVA---NRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 K GIK LL + D ++ + D+G+ + P NAAGRL+D V+L + ++ E Sbjct: 246 KW-IGIKQLLRKVFPEDWDTREYCSYDVGYLIAPIFNAAGRLEDAKQAVSLFIEEDGFEC 304 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 + +L N RK I++ + ++ EK + L + + + +H GV+GI+AS Sbjct: 305 LTIIEQLLENNNERKNIQKKILEASIAEIEKKQLYNKNL---ILVANKSFHHGVIGIVAS 361 Query: 376 RIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 +I +++++P I +G S RSI G+++ + L + +++K+GGH+ AAG Sbjct: 362 KILDKYYKPSIIMEIKESEGVATASCRSIDGINIVECLNSVSD----ILVKYGGHSGAAG 417 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 +++ + + F QR + + E L + + L+P ++ E + L P+G Sbjct: 418 FTIKIENIEEFYQRVDKYIGENFPKELFVKTIKIENILAPYKVNYEFLRELEILEPYGAK 477 Query: 495 FPEPLFD---GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQ 551 P+F + L+ HL + ++ + I F +++ Sbjct: 478 NHTPIFAFKNCEYENLRFTKNSTEHLMLDIK-KDNYYFKNCIFFGGGDYYDIIANSKKID 536 Query: 552 LAYKLDINEFRGNRSLQIIIDNIW 575 +A+KL + F+ ++ ++++ Sbjct: 537 VAFKLKLETFKDRYMCKLQLEDVK 560 >UniRef50_A1VF80 Single-stranded-DNA-specific exonuclease RecJ n=10 Tax=Desulfovibrionaceae RepID=A1VF80_DESVV Length = 580 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 190/541 (35%), Positives = 280/541 (51%), Gaps = 24/541 (4%) Query: 41 LERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGC 100 L ++ + P ++ G+ +A ++ G V GD+D DG TSTAL + G Sbjct: 58 LSPQLRHLAPLEEWPGLAEAAGVITAGITAGMPFAVWGDYDVDGVTSTALVHDVLEFHGV 117 Query: 101 SNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTD 160 ++ + +P+R +GYGL+ E +++ A G +L++TVD GIS + AR LG+ V+V+D Sbjct: 118 -DVRHHLPDRRAEGYGLNVEWIERLAADGVRLLLTVDCGISDVVPISRARELGMTVVVSD 176 Query: 161 HHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIP 220 HHLP + LP A AI NP L C P +LAGVGVAF++M A+ L ER+ Sbjct: 177 HHLPPEVLPPAHAICNPRLACC--PCPALAGVGVAFFVMAAVNAALG------ERSGRRY 228 Query: 221 NLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ-KLA 279 ++ E+LDLVALGT+ADVV L NRIL G+ +I + RPG+ AL VA + L Sbjct: 229 DMREVLDLVALGTLADVVDLGGQNRILVKNGLLKIAEAR-RPGMAALKAVAGYNPSASLG 287 Query: 280 ASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIE 339 A + F L PR+NAAGRL + + + LL N GEA LA LDA+N R+ E + E Sbjct: 288 AGQVVFGLAPRINAAGRLGEAEMALQLLRARNHGEAAQLAQRLDAMNTDRRVEEDRILEE 347 Query: 340 ALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGS 399 A E SR G ++ +WH GV+GI+ASRI E ++RP + G+ TLKGS Sbjct: 348 AKRQAESQAASR----MGFVLHGEDWHPGVIGIVASRIVEAYYRPTLILCTEGE-TLKGS 402 Query: 400 GRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDP 459 GRS+ + L + L+ G FGGH AAG+SL+ ++RF +V + L Sbjct: 403 GRSVSEFDLHAGLSQCADLFLG----FGGHRQAAGMSLKTSALDALRERFDTVVRQALGD 458 Query: 460 SLLQGEVVSDGPLSPAEM-TMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ-QRLVGE--R 515 + L + DG L V + L P+G EP+F L++ R G+ Sbjct: 459 TPLTASLKLDGDLGFEHASDFTVLKELEMLQPFGTGNAEPVFASPPLLVRGLRRFGKARE 518 Query: 516 HLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 H+++ + G L A+ ++LAY I+ + G S+ + I + Sbjct: 519 HVELELTDESCGVTLHAKAWRQSGEFSDRLRGTRIRLAYTPRIDRYSGAASVDLRIRDWQ 578 Query: 576 P 576 P Sbjct: 579 P 579 >UniRef50_B0TAW1 Single-stranded-DNA-specific exonuclease recj n=2 Tax=Heliobacteriaceae RepID=B0TAW1_HELMI Length = 577 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 193/567 (34%), Positives = 286/567 (50%), Gaps = 34/567 (5%) Query: 16 ADLPAELPPLLRRLYASRGVRSAQE---LERSVKGMLPWQQLSGVEKAVEILYNAFREGT 72 L P L A RG+ A+ + ++ M + + G A I+ + Sbjct: 11 ISSYPGLTPFQAALLARRGIGPAEAERFIRSGIEDMYDPRLMKGATAAAAIISDTIDRQV 70 Query: 73 RIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARG-AQ 131 I V GD+D DG T TAL V ++ LG +++D+ + +RF +G+G+ P +++ RG + Sbjct: 71 PITVYGDYDCDGVTGTALLVESLTKLG-ASVDWYINSRFVEGFGMHPLGIEEIARRGTPR 129 Query: 132 LIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAG 191 LI++VDNGIS+ V AR LG+ V++TDHH P + LP A+ I+NP C +P K LAG Sbjct: 130 LIISVDNGISAGDAVRRARELGMQVVITDHHEPSEELPPADVIVNPKQAGCAYPEKHLAG 189 Query: 192 VGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQG 251 VGVAF +M L F L LDLVA+GTVADV+P+ NRI G Sbjct: 190 VGVAFKVMQIL---------FQAAGRPREILRS-LDLVAIGTVADVMPVTGENRIFIKNG 239 Query: 252 MSRIR-AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD-MSVGVALLLC 309 + I + R G++A+ + AN A LGF GP LNA GR+D + V LLL Sbjct: 240 LKLINWGNRTRIGLQAIKDAANLKGDVNAHYHLGFIFGPMLNATGRIDGVPAAAVELLLT 299 Query: 310 DNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGV 369 + A LA +L +N+ R+E+ + ALT + + PG + +Y+P +H+G+ Sbjct: 300 ADRHRAAGLAAQLRKVNEERQELTRRQTEVALTQAQT-KMQGTGAPGFIVVYNPAFHEGI 358 Query: 370 VGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGG 428 VG++ASR+KE +HRPV+A + + G LKGS RS++G +++ L ++LK GG Sbjct: 359 VGLIASRLKEVYHRPVLALTDSHEPGVLKGSVRSVKGFSVKEHL---IDGCADLLLKGGG 415 Query: 429 HAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 H MAAG SL ++ R V + L V D L P EM + + + Sbjct: 416 HEMAAGCSLIKENLAALCCRLDAAVHQA-PADLFVPSVGIDYVLEPKEMDRGLVTQIEEF 474 Query: 489 GPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDN 545 P+G FP P F F Q R VG HL++ G + I FN A N Sbjct: 475 APYGAGFPRPNFLLAPFWPEQVRFVGRDGNHLRL------SGQGVIAIGFNQAEAFRKAN 528 Query: 546 GVREVQLAYKLDINEFRGNRSLQIIID 572 + L +IN++ +RS+Q + Sbjct: 529 PQGTLALLGLPEINDY--DRSVQFRLR 553 >UniRef50_Q2RHV6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHV6_MOOTA Length = 911 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 173/559 (30%), Positives = 278/559 (49%), Gaps = 25/559 (4%) Query: 22 LPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 + P+ ++ +RG+ +A + ++P +++ G+ A E L A + +I+V Sbjct: 18 ISPITAQILINRGITTAAAARAFFQPDPANLIPPEKIPGLPAARERLVQAIEKREKIMVH 77 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG +TA+ + + LG + +P+R +GYGL + + +A QL++TVD Sbjct: 78 GDYDVDGLAATAIMLETLARLGVE-AEVYLPDRLTEGYGLKKKSLIKALELNCQLVITVD 136 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 GI+S AR G+ +I+TDHH PG +LP A A++N L G GVAF Sbjct: 137 CGITSLEEAIFAREQGLDLIITDHHRPGTSLPQASAVVN---PLLAPGLPPLCGAGVAFK 193 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 L +L T G + +A LDLVAL T+AD VPL NR+L G+ + + Sbjct: 194 LAQSLATHF---GLAPQGGVAAGWA---LDLVALATIADAVPLLGENRLLVQLGLKAL-S 246 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 G RPG+KAL EVA A++ A ++ F L PRLNA GRL + + +LL + A Sbjct: 247 GSMRPGLKALAEVAGLPAREWTAREVAFGLVPRLNACGRLGNAMPALEILLTSSPQRALE 306 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 LA L NQ R+ +E+ + EA + + GL + WH GV GI+A+R+ Sbjct: 307 LAQRLQEENQARRHLEESIAAEAEAMAVTALAAG---AKGLVLAAEGWHPGVTGIIAARL 363 Query: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 E+++ PV+ A GD +GSGRS+ G+++ + R + +L FGGHA A GL + Sbjct: 364 VEKYNCPVVLIAVVGD-RGRGSGRSLPGINLHEIFARCRS----YLLSFGGHARAGGLEI 418 Query: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 + FQ F E+V + EV + + +++ ++ + L P+G+ P Sbjct: 419 AAKEIPAFQAAFNEIVKSLMAEVQTPPEVAPEAEVLVSQLDWQLLEELEQLAPFGEGNPR 478 Query: 498 PLFDGHFRLLQ-QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKL 556 P+ L++ R VG + + G G + I FN+ + V LA+ L Sbjct: 479 PVLVTRRALIKAARQVGRDGAHLKLTAGGEGREIGAIGFNLSLP-PGLSPGHHVDLAFYL 537 Query: 557 DINEFRGNRSLQIIIDNIW 575 + N +R LQ+ + + Sbjct: 538 ERNTYRDREELQLRLVALK 556 >UniRef50_A3UCE8 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UCE8_9RHOB Length = 592 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 184/586 (31%), Positives = 287/586 (48%), Gaps = 26/586 (4%) Query: 3 QQIQLRRREVDETADL--PAELPPLLRRLYASRGVRSAQE---LERSVKGMLP-WQQLSG 56 + +L+ + + + + L RL A+RG+ + L ++ P L G Sbjct: 15 RSWRLKAADDNAIQAICRATGVSDALGRLMAARGLTAEDAPAFLAPKLRDSFPDPSTLKG 74 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++A +++A G RI + D+D DGATS A +R+LG I Y VP+R E+GYG Sbjct: 75 MDEAARRIWDALDAGDRIALFADYDVDGATSAAQLGGWLRTLGADPIIY-VPDRIEEGYG 133 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + + +GA+L++T+D G +S + A +G+PV+V DHHL +P A+A++N Sbjct: 134 PNAPALKSLKEQGARLVITLDCGAASVGPLTAAHEMGLPVVVIDHHLMDGEIPPADALVN 193 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 PN LA GV F L+ AL R +G F + A PN+ + DL ALGT+ D Sbjct: 194 PNQPGDVSGCGHLAAAGVTFVLLAALNREGRRRGAF--KGQAEPNVLDFADLAALGTICD 251 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 VV L NR + QG+ + + RPG+ AL A + GF LGPR+NA GR Sbjct: 252 VVSLTGVNRAIVAQGLKVM-SAWSRPGMAALAAAAGVQG-PASPYHAGFLLGPRINAGGR 309 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + +G L++ + EA +A LDALN R+ IE + +A E L+ DT Sbjct: 310 VGQSDLGARLMMTQDPKEAAHIAQTLDALNAERRAIETEVLDQAQAQVEALKLEDDT--P 367 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERL 415 L WH GV+GI+A RIKERF+RP I + G KGSGRS G+++ A+ Sbjct: 368 ILIASGEHWHPGVIGIVAGRIKERFNRPAIVIGVDPETGLGKGSGRSCTGVNLGAAVAAA 427 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 G+++ GGHAMA GL+++ ++ + + + D +SP+ Sbjct: 428 RE--EGLLVAGGGHAMACGLTVDVNRIGELTDYLTARLKQEWIAAEEARTYSVDAVISPS 485 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 ++ E + L A P+G PEP F R + VG H++ E GGG L GI+ Sbjct: 486 AVSFEFCEALSAAEPYGMGNPEPRFAFSSLRRTYAQRVGTDHVRFTFESPGGGR-LTGIS 544 Query: 535 FNVDT----ALWPDNGVREVQLAYKLDI--NEFRGNRSLQIIIDNI 574 F + +A KL N + G ++ ++ ++++ Sbjct: 545 FRSADQPMGQALLNGPDGLWHVAGKLRAEDNRY-GRKA-ELHLEDL 588 >UniRef50_A4E7W6 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7W6_9ACTN Length = 1095 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 177/580 (30%), Positives = 292/580 (50%), Gaps = 30/580 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLP-----WQQLSG 56 + + + E+++ +P L+ R+ + G+ S +E + + L + G Sbjct: 9 RWAVAQQNPELEKELSAGLGIPGLVARIMVAHGIGSIKEGQLFLTPSLDRDWADPLIIPG 68 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + + + A R I V GDFD DG TST L A+R+ G +++ +P RF++GYG Sbjct: 69 MSVVADRVERAIRNHEHIAVFGDFDVDGITSTCLLTEALRTFG-ADVTPFIPRRFDEGYG 127 Query: 117 LSPEVVDQAHA-RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 LS +D+ + QLIVTVDNGI++ V + +SLGI ++VTDHH P D +P + Sbjct: 128 LSRAALDRVNELARPQLIVTVDNGIAAKEEVSYLKSLGIDLVVTDHHEPSDQVPQGVPLT 187 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P L D PS+ LAG GVA L+ L L ++ L+++ ALGTV+ Sbjct: 188 DPKLDDDG-PSRELAGAGVALKLVQVLGERLGKPSYW----------RSLIEVAALGTVS 236 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D++PL NR L +G+ ++R RPG AL +A D + A L F+L PRLNAAG Sbjct: 237 DMMPLTPENRALVAEGIQQMRVT-ARPGYIALAALAKADLSSITADGLSFSLIPRLNAAG 295 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ D + + LLL + EA LA EL+ +N+ R+EIE + +A+ E+ Sbjct: 296 RMADPKLALDLLLARDPIEASALAAELEEINRQRREIEAELTRDAMAKVEETYDGG---- 351 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + + WH+GV GI+ASR+ R+H P + F+ DG +GSGRS+ +++ DA+ER Sbjct: 352 RAIVVGGEGWHEGVKGIVASRLTNRYHVPALLFSIE-DGIARGSGRSVGKVNLFDAIERC 410 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L M++ GGHA A G+++E K F++R +++E L + + + Sbjct: 411 SDL----MIRRGGHAGAVGVTIEASKLDEFRRRLSVVLSE-LPAEDFEDTDEVAATVDLS 465 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 E+ +E + + P+GQ PL + + +VG+ + G + I Sbjct: 466 ELNIETIEQISRLEPFGQGNKVPLLAAEGVTMCDRAVVGKTGEHMRFVATDGAASVPAIM 525 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 F V N V L ++ ++G ++++ ++ Sbjct: 526 FRVPQIDKLINCDSAVDLVFEAVAEHWQGRVKPKLMVKDV 565 >UniRef50_A6Q667 Single-strand DNA-specific exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q667_SULNB Length = 527 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 162/539 (30%), Positives = 265/539 (49%), Gaps = 34/539 (6%) Query: 39 QELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSL 98 +E S+K + +++A E + A +I ++GD+D DG TST L L + Sbjct: 19 KEGFLSLKDLPHPSTFKDMDRATERIVRAIENREKISIIGDYDVDGVTSTTLMKLFFDEI 78 Query: 99 GCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIV 158 +++++PNRF DGYGLS ++ + G L +TVDNGIS+ + + GI +I+ Sbjct: 79 DYP-VEWVIPNRFRDGYGLSANIIPRIA--GTDLAITVDNGISAVYAAQLCKEEGIELII 135 Query: 159 TDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIA 218 TDHH+ +P A AII+ C+FP + + G +A+YL+ +L+ L + Sbjct: 136 TDHHMLAPEVPEAYAIIDQKQEACSFPYEEVCGAQIAWYLIASLKNALALK--------- 186 Query: 219 IPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKL 278 N+ ++L A+ +ADV+PL NR + +G+ + RP IKA +E ++ +L Sbjct: 187 -INMMPYMELAAIAIIADVMPLWHINRAMVERGIKALSQS-SRPAIKAFMEHTQKE--EL 242 Query: 279 AASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQI 338 ++ D+ F+ P LNAAGR++D S V L NI +ARV L N RK E+ + Sbjct: 243 SSEDIAFSFAPILNAAGRMEDASHAVDFLTSTNIYDARVRLERLIGFNTERKATEEDITR 302 Query: 339 EALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKG 398 +AL D + + WH+GVVGI+A+R+ +P I + +G LKG Sbjct: 303 KALQKA-------DWEDEVIIVAGEGWHEGVVGIVAARVARVREKPCIILSRNEEGILKG 355 Query: 399 SGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGE-LVTEWL 457 SGRS + ++ + KFGGH A GLSL E F+ F+++ E Sbjct: 356 SGRSYGECDLFGIVDGCRED----LEKFGGHKAAIGLSLHETHFESFREKVQESYHQGNY 411 Query: 458 DPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERH 516 + E+V G L +E++ + ++++ P+G P P F +LQ +G+ Sbjct: 412 VKEEIDPEIV--GELHFSEISFALTEMMQKYEPYGHGNPRPKFISSDVEILQADTMGKEG 469 Query: 517 LKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + G ++ G+ F V + Y ++ N FRGN +LQ++ID I Sbjct: 470 EHLRFSFAQEGIVMPGVKFKTKEHFET---GERVSITYTVNENHFRGNVTLQLMIDKIK 525 >UniRef50_A5TTL1 Recombination protein J n=7 Tax=Fusobacterium RepID=A5TTL1_FUSNP Length = 844 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 155/564 (27%), Positives = 272/564 (48%), Gaps = 34/564 (6%) Query: 19 PAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVG 78 +L ++ L +R L L ++ A + ++ A + +I + G Sbjct: 24 EKKLDFIIEDLIENRN------LSLDTNFDFNPFDLKDMDIATQRIFEAIKNNQKIYIYG 77 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DG TS +L LA+ L +N++Y +P R ++GYGL+ + + A L+++VD Sbjct: 78 DYDVDGITSVSLLYLALSEL-SANVNYYIPLR-DEGYGLNKDAIQNLKNENADLVISVDC 135 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 GI+S + A L + I+TDHH +P A AIINP + + K LAGVG AF L Sbjct: 136 GINSIEDINFANELNLDFIITDHHEITGDIPKALAIINPKREENIYSFKYLAGVGTAFML 195 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 + AL + +L + LD+VA+GTVAD+VPL ++NR +G+ +R Sbjct: 196 VYALYIKMNKLN----------DLEKYLDIVAIGTVADIVPLISDNRKFVKRGLETLRNS 245 Query: 259 KCRPGIKALLEVA---NRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 K GIK LL N D ++ A D+G+ + P NAAGRL+D V L + ++ Sbjct: 246 KW-IGIKQLLRKIFPDNWDTREYFAYDIGYIIAPIFNAAGRLEDAKQAVTLFIEEDGFRC 304 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILAS 375 + +L N RK I++ + ++ EK + L + + + +H GV+GI+AS Sbjct: 305 LSIIEKLLENNIERKNIQKKILEMSIIEIEKKQLYNKNL---ILVANKSFHHGVIGIVAS 361 Query: 376 RIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 +I +++++P I +G S RSI GL++ + L + +++K+GGH+ AAG Sbjct: 362 KILDKYYKPTIIMEIKENEGIATASCRSIDGLNIVECLNSVSD----ILVKYGGHSGAAG 417 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 +++ + + F QR + E D L ++ + L+P ++ E + L P+G Sbjct: 418 FTIKIENIEEFYQRIDSYIEENFDKDLFIKKLKIEKILAPYKVNYEFLKELEILEPYGAK 477 Query: 495 FPEPLFDGHF---RLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQ 551 P+F L+ HL + ++ G + I F + + + Sbjct: 478 NHTPIFAFRNCQYENLRFTKNSTEHLMLDIK-KDGYNFKNCIFFGGGDYYDIISSSKNID 536 Query: 552 LAYKLDINEFRGNRSLQIIIDNIW 575 +A+KL + F+ ++ +++I Sbjct: 537 IAFKLKLEIFKDRYMCKLQLEDIK 560 >UniRef50_Q04F00 Single-stranded DNA-specific exonuclease n=1 Tax=Oenococcus oeni PSU-1 RepID=Q04F00_OENOB Length = 622 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 166/574 (28%), Positives = 279/574 (48%), Gaps = 45/574 (7%) Query: 9 RREVDETADLPAELPPLLRRLYASRGVRSAQELERS----VKGMLPWQQLSGVEKAVEIL 64 ++ + + L L + A R S +E + ++ +L +E + L Sbjct: 14 DKQFIQKIEQHFSLDRLTSTVLAGR-FSSVPLIEDFFSSDLNKLVDPSRLDQIELLKKRL 72 Query: 65 YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124 +A +I + GD+DADG TST++ + ++ LG + +DY +PNRF DGYG + V Q Sbjct: 73 ISAIDNQEKITIYGDYDADGITSTSILLKTLQILG-ARVDYFIPNRFRDGYGPNKFVYQQ 131 Query: 125 AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNF 184 G +LI VDNGIS V+ A + V++ DHH LP A+AII+P+L D ++ Sbjct: 132 LIDTGTKLIFAVDNGISGFDAVDLANRNQVDVLIADHHQLPKKLPNAKAIIHPDLSD-DY 190 Query: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANN 244 P K+L+ G+AF + L + + LVA+G +ADV+PL N Sbjct: 191 PFKNLSAAGIAFKVSKYL--------------LGTQKARQFFPLVAIGEIADVMPLINEN 236 Query: 245 RILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGV 304 RIL G+ I++G+ + G++ +++ A+ + L A D+ F + PRLN+ GR+ D +GV Sbjct: 237 RILIQTGIDLIKSGENK-GLQEVIKRADLKLESLTAQDIAFKIAPRLNSLGRMADAGIGV 295 Query: 305 ALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE 364 LL D+ + +A +++ LN+ R++ + A E + + + Sbjct: 296 ELLTTDDSDKVSEIAKQVEHLNKQRQKEADKIYRIASRQVSPQENN------IIIVSGEN 349 Query: 365 WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMML 424 WH+G++GI+A R+ F RP + F+ +G KGS RS + L+R LY + Sbjct: 350 WHEGIIGIIAGRLSAYFGRPAVVFS-VKNGIAKGSARSTGDFDLYKVLDRARDLY----I 404 Query: 425 KFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQL 484 FGGH AAGLSL+ + D G + D + +++++ + Sbjct: 405 SFGGHKQAAGLSLKASDLDRLDKILNAD-----DYHFSVGRLAIDAVIKAEDLSIDSFKQ 459 Query: 485 LRDAGPWGQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTAL 541 L P+G+ PEP+FD L+ R++G ++H K+ V G D + FN + Sbjct: 460 LSKLAPFGEGNPEPIFDLDDVELVNLRILGSDKKHFKLKVNGFSG----DILFFNRPDLI 515 Query: 542 WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + L +NE++ +SLQII +I Sbjct: 516 GKLQLGERLSIVGTLSLNEWKHRQSLQIIGKDIR 549 >UniRef50_Q3AK10 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Chroococcales RepID=Q3AK10_SYNSC Length = 618 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 176/559 (31%), Positives = 275/559 (49%), Gaps = 27/559 (4%) Query: 21 ELPPLLRRLYASRGVRSAQELERSVKG-MLPW--QQLSGVEKAVEILYNAFREGTRIIVV 77 +LP LR + RG S E + LP +E+A + L A R R+ + Sbjct: 11 DLPLALRCVLRRRGFSSTSEAASFLSPGDLPPTRDHFPDLEQACDRLVAACRSRERVAIC 70 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+DADG TSTAL + A+ LG + +P+R E+GYGL+P +V + + G +L+VTVD Sbjct: 71 GDYDADGMTSTALLLRALAPLGAEP-EPAIPSRMEEGYGLNPAMVQRLYDDGVRLLVTVD 129 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 NG+++ +E A SL + VIVTDHH P A+I+P P + LAGVG+A+ Sbjct: 130 NGVAAREALELAASLTMQVIVTDHHTIPMERPPMTALIHPATTPEGSPYRGLAGVGLAYV 189 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 + A+ L DL +GTVAD+ PL NR +G++++ Sbjct: 190 VAHAVAEALNKPEAIRVAR----------DLFCIGTVADMAPLVGANRSWLLEGLNQLHR 239 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 +C+ G++AL +A + L A D+GF L PR+NA GRL + + V LL ++ A Sbjct: 240 SECK-GVQALQHLAGLGERPLTAEDIGFQLAPRINAVGRLGEPRLVVDLLTAEDPDSAMA 298 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 LA D N+ R+++ ++ EA+ L E S + LP L + WH GV+GI+A+R+ Sbjct: 299 LARRCDDCNRQRRDLCDAIEAEAVALVEA--ESDEALPSFLLLAQSHWHHGVIGIVAARL 356 Query: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 ER+HRP A GDG+L+ S R G + AL L + +FGGH A G ++ Sbjct: 357 MERYHRPTALLAGEGDGSLRASVRGPIGFAVDRALSSCSDL----LTRFGGHPAAGGFTV 412 Query: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 + + +R WL V D L ++ ++ + L+ P+G P+ Sbjct: 413 KAELVHALHERLCSEADSWLMTQAQGRPVQPDALLQLKDVNWDLWRHLQSLAPFGIGHPK 472 Query: 498 PLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKL 556 PLF + +R + HL + + G IA+ D++ +AY + Sbjct: 473 PLFWSRGVSVGDRRDLKGGHLALTLRQ--GESERRAIAWRWDSSAA---VPECCDVAYSI 527 Query: 557 DINEFRGNRSLQIIIDNIW 575 IN ++G + LQ+ + I Sbjct: 528 SINRWQGEQRLQLELKAIR 546 >UniRef50_D0LJ88 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJ88_HALO1 Length = 577 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 184/590 (31%), Positives = 282/590 (47%), Gaps = 32/590 (5%) Query: 1 MKQQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELE----RSVKGMLPWQQL 54 M +R + + L A L + R A RG+ A + + P L Sbjct: 1 MTSTWTIRTVDATTVSSLAAGLGVSEITARCLAGRGIADASSARSYLAPRLNQLRPPVGL 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +G+ AVE L A +G RI + GD+D DG T+ AL + LG S + + R + G Sbjct: 61 TGLSTAVERLARAVSQGERIGIFGDYDVDGVTTAALMASFLEQLGASCVPRVA--RRDAG 118 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGD--TLPAAE 172 YG D + G ++I+T D G S +E A + G+ VIV DHH A Sbjct: 119 YGFGSAEADAMASAGCRVIITGDCGTSDIDAIERAAARGVDVIVVDHHTVPSATEQHPAL 178 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A++NP D FP +++A VG+AFYLM ALRT L +G+F +P+L ELLDLVALG Sbjct: 179 ALVNPLRADSTFPFRAMASVGLAFYLMAALRTELSGRGYF-RSGREMPDLRELLDLVALG 237 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQK-LAASDLGFALGPRL 291 TVAD+VPL NRIL G+ + G+ RPG+ AL+ +A + + +G+ LGPRL Sbjct: 238 TVADLVPLQGENRILAATGLQYLAQGR-RPGVAALMALAKVGGDRGIDERAIGWRLGPRL 296 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NA GR+ D + ++LLL + EA A +++ N+ R+ + + + L + + Sbjct: 297 NAPGRMGDAAPALSLLLARDAAEAEHWAAQVEDANERRRAAQAEVWEQVLGMLPSADPG- 355 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG-DGTLKGSGRSIQGLHMRD 410 + + W G+ GI+AS++ E F RP A G +GSGR+ +G H+ + Sbjct: 356 ----PAVVVAGDGWPSGITGIVASKLNEMFERPSFVIAVDPVSGLARGSGRAPKGFHLCE 411 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGE---VV 467 L R D+ +++FGGHA AAGL+ E + + ++ V E G + Sbjct: 412 ILARCDS----HLVRFGGHAGAAGLTAEAGRVEALREALSAAVAEASADGDEGGAGRGSL 467 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGER--HLKVMVEPV 524 D + ++ + + L P+GQ +PL R+ R VG HLK+ E Sbjct: 468 IDAEVDLGQVDESLCRELGQLSPFGQGNEKPLLGCRGMRVRTTRRVGGDGSHLKLEFEDR 527 Query: 525 GGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 G L GIAF + + IN +RG +++ I ++ Sbjct: 528 Q-GRALSGIAFGWGERDP--GAGATIDATFVPSINVWRGESRVELEIQHL 574 >UniRef50_UPI0001C31CC5 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CC5 Length = 846 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 189/582 (32%), Positives = 280/582 (48%), Gaps = 32/582 (5%) Query: 3 QQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELERSVK--GMLPWQQLSGVE 58 ++I+L + L A L L ++ RG + + G++ Sbjct: 4 RRIELAPCDPAAVEALRAALGCSRTLAQVLVRRGHADPAAARAFLAATDAHDPGEFGGID 63 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 AVE + R GTRI V GD+D DG STA+ + A+R LG ++ D+ +P+R +DGYGL+ Sbjct: 64 VAVETILGHVRAGTRITVHGDYDVDGVCSTAILLRALRQLG-ADADWFLPSRIDDGYGLA 122 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP--GDTLPAAEAIIN 176 V++ ARG +L++TVD I++ V AR+ GI V+VTDHH P LP A I++ Sbjct: 123 ATTVERLAARGTRLLITVDCAITAVEEVAAARAAGIDVVVTDHHQPRADGRLPDA-PIVH 181 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P++ +P L GVA+ L AL + LDLVAL TVAD Sbjct: 182 PSISG--YPFPDLCAGGVAYKLAQALHR---------AAGGDPARADDDLDLVALATVAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +VPL NR L +G+ + A +PG++AL+ VA D L A +G+ L PR+NAAGR Sbjct: 231 LVPLRGENRRLVREGLRAL-ASTAKPGLRALMRVARVDPSGLDAGAVGYRLAPRINAAGR 289 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L GV LLL D+ A +A+ELDA N R+ EQ + EA +L Sbjct: 290 LYRADAGVELLLTDDEARATAIADELDAANAERRMTEQRILWEAEEQVRELGER-----P 344 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERL 415 + WH GV+GI+ASRI ER +RP + A D G+ GSGRSI+ + AL Sbjct: 345 AYVLAGEGWHPGVIGIVASRIVERTNRPALLIALDPDTGSGTGSGRSIRAFDLLGALHAA 404 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L + ++GGH AAGL++ + ++ F L P L D + Sbjct: 405 APL----LERYGGHRAAAGLTIAAGRVAQLREAFEAHAASVLSPEDLVPVERVDALVGGR 460 Query: 476 EMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 + +E+A+ L P G P P L L+ R +G+ GG +A Sbjct: 461 ALGLELAEELARLEPCGMGNPRPNLLVPAAHLVDVRPMGQEGRHARFSVEAGGTRCRAVA 520 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 F+ D L P + ++L+ NE+ G ++++ + P Sbjct: 521 FSCDGRL-PVDEQTPADATFRLERNEWNGAVEPRLLLRHATP 561 >UniRef50_A8SRX9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SRX9_9FIRM Length = 630 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 168/623 (26%), Positives = 291/623 (46%), Gaps = 69/623 (11%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGV 57 K I +R + E + P++ R+ +RG+ + + G + + + Sbjct: 19 KWTIMSKRADFAE-IGRKFGIDPVVARVITNRGICGDDNINMYLNGGADLLHDPGLMKDL 77 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSL----------GCSNIDYLV 107 + I+ + G+RI ++ D+D DG TS + +L +R + C +DY + Sbjct: 78 PEGCRIVMDKLENGSRIRIISDYDVDGVTSNYILLLGLRKVWAQIHGARPEECEIVDYDI 137 Query: 108 PNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG-- 165 P+R DGYG+ ++D A A G I+T DNGI++ +++A+++G+ VIVTDHH Sbjct: 138 PHRIHDGYGIKNRLIDAAKADGVDTIITCDNGIAAFEQIKYAKTIGMTVIVTDHHQVPYQ 197 Query: 166 --------DTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNI 217 TLP A+A+I+ DC +P K L G GVA + L I Sbjct: 198 ENGDGTKTYTLPPADAVIDNQRVDCQYPFKGLCGAGVACKFIQYLYRLC---------GI 248 Query: 218 AIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQK 277 + E +++ L T D++ L NRI + ++ + PG+ AL+ ++ ++ +K Sbjct: 249 DEREIQEFFEVLGLATNCDMMDLVDENRIFVKYALESLKDSR-NPGLNALMRLSGKNEKK 307 Query: 278 LAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQ 337 + DLGF +GP +NAAGRL D + LL N +A A EL +N RK + + Sbjct: 308 ITTYDLGFLIGPCINAAGRLGDARTSLEFLLEKNAAKAETKAAELIQINNDRKSMTENGV 367 Query: 338 IEALTLCE------KLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA 391 + E ++ + + Y P+ H+ VVGI+AS++KE + RPV+ F + Sbjct: 368 KLITKMLEDATIAGEIGDTATLADHVIVAYIPDVHESVVGIIASKLKEAYSRPVMIFTDS 427 Query: 392 GD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFG 450 G LKGSGRSI+ +M + L R+ + + FGGHAMAAG S+E + ++ Sbjct: 428 EHAGILKGSGRSIESYNMYEHLSRVKSYFRE----FGGHAMAAGFSIESSRLGELRRVLN 483 Query: 451 ELVTEWLDPSLLQGEVVSDGPLSPAEM---TMEVAQLLRDAGPWGQMFPEPLFD-GHFRL 506 E L + +V D + + +M + + L P+G+ + LF + + Sbjct: 484 EQCA--LTDEDITPKVRIDVGMPLQYLARQSMRITEQLYLLEPYGKGNRKALFGQANVPV 541 Query: 507 LQQRLVGER-HLKVMVEPVGGGPLLDGIAF-------NVDTALWPDNGVR---------E 549 + ++G+ +L +V +G ++ I F N+ D + Sbjct: 542 RKASILGKNRNLLKLVLDIGENQYMEAIYFDPDEFVNNIKQWFGADECDKMLNGRPNKVV 601 Query: 550 VQLAYKLDINEFRGNRSLQIIID 572 + + Y +INEFR R++QI ++ Sbjct: 602 IDMVYYPEINEFRNTRNVQIRLE 624 >UniRef50_A8EWZ8 Single-stranded DNA-specific exonuclease n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EWZ8_ARCB4 Length = 522 Score = 511 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 155/550 (28%), Positives = 279/550 (50%), Gaps = 42/550 (7%) Query: 28 RLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATS 87 L ++R V + + + P ++ A + + A E I +VGD+D DG S Sbjct: 11 ELLSARHVNNP---YSKLADIPPPTSFKDIDIATKRIKKAILENETITIVGDYDVDGIVS 67 Query: 88 TALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVE 147 T + + + + +++++PNRFE GYGLS ++VD +G L++TVDNGIS++ Sbjct: 68 TTIMLDFFKQINI-KVNHIIPNRFEHGYGLSTKIVD-LIEKG--LVITVDNGISAYEASL 123 Query: 148 HARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLR 207 + I +I+TDHH G+ +P A AIINP +DC FP K + G VA+YL A++ + Sbjct: 124 KLKEKNIDLIITDHHTVGEKIPEALAIINPKQKDCTFPFKDICGAQVAWYLCAAIKKEMN 183 Query: 208 DQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKAL 267 N+++ LDL+ + +AD++P+ A N +T QG+ ++++ R K L Sbjct: 184 LNV----------NMSDYLDLLCIAIIADIMPMTALNYTITKQGLKKLKSS-SREAFKLL 232 Query: 268 LEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQ 327 + + L + D+GF + P+LN+AGR+DD ++ + LL ++ A + LD LN Sbjct: 233 NSI--LSKESLISDDIGFFIAPKLNSAGRMDDATIALDFLLSEDSFSANESLSLLDELNN 290 Query: 328 TRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIA 387 RK +++ + +A D + ++ WH+GV+GI+AS++ + +P Sbjct: 291 YRKTLQEDISNKANLKI-------DKNKNAIIVWDENWHEGVIGIVASKLSNLYKKPAFI 343 Query: 388 FAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQ 447 F + KGS R+ +++ + + + L ++ FGGH AAGLSL+ + + F++ Sbjct: 344 FTVQENDIAKGSVRANSNINLYELISKASHL----LIGFGGHKNAAGLSLKLENIEEFEK 399 Query: 448 RFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRL 506 E + + L E+ + G L + + +E ++ P+G P+F + L Sbjct: 400 IINEELENF--KDDLHIEIDTLGELDVSSVDLEFLSIIEGFEPYGLENHRPIFKISNVNL 457 Query: 507 LQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGN 564 ++ L+G + HLK+ ++ G + + I FN P+ + L + NEF+G Sbjct: 458 VKYDLIGRDKNHLKLTLD--SNGVIFEAIKFNDSNKNIPNI----LNLIVSVAKNEFKGV 511 Query: 565 RSLQIIIDNI 574 + Q +I I Sbjct: 512 ITPQFLIQEI 521 >UniRef50_A7ZG65 Single-stranded-DNA-specific exonuclease RecJ n=26 Tax=Campylobacteraceae RepID=A7ZG65_CAMC1 Length = 535 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 160/570 (28%), Positives = 282/570 (49%), Gaps = 42/570 (7%) Query: 8 RRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNA 67 R++ + + ++ LL R + + ++ + + + L + K + A Sbjct: 4 RQKVLAKAMLTKEDIRNLLARRFCN-------DIHKKLSEIPTPSALKDIYKGANRIKEA 56 Query: 68 FREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHA 127 I +VGD+D DG S+ + LG N +PNRF+DGYGL+PE++D+ + Sbjct: 57 IERNEHIAIVGDYDVDGVVSSVILAEFFDDLGVKNYLVKIPNRFKDGYGLNPEIIDELAS 116 Query: 128 RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSK 187 LI+TVDNGIS++ + GI +I+TDHH+P LP A AIINP DCNFP+ Sbjct: 117 D-VSLIITVDNGISANDAAAICKEKGIDLIITDHHMPPAVLPEAYAIINPKQEDCNFPNI 175 Query: 188 SLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRIL 247 + G VA+YL+ AL+ + ++++ L+L+A+ +AD++ L NR+L Sbjct: 176 EICGAEVAWYLVGALKDVCKLN----------YDMSKFLELLAIAIIADMMELRDMNRML 225 Query: 248 TWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALL 307 G+ ++ A K R + E +D K D+ F + P +N+AGR+DD L Sbjct: 226 VRMGICKLNASK-RSAFCVIKEFYGKD--KFECDDISFLIAPLINSAGRMDDAMNSFNFL 282 Query: 308 LCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQ 367 +I EA + + N +RKE E+ + +L ++ + + +WH+ Sbjct: 283 RAKSIEEAYDYLDTIIEFNNSRKEEERQLFECSLKDVKE-------DDEVIITWGEQWHE 335 Query: 368 GVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 GV+GI+ASR+ + F +P I F+ G KGS RS+ L + + + ++ +G Sbjct: 336 GVIGIVASRLAKHFAKPAIVFSIDK-GRAKGSARSVGKLDILSLIAS----HEDLLTSYG 390 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRD 487 GH AAGL+L + + F++ + + L+ + G + P+E+ E+ ++L Sbjct: 391 GHKGAAGLTLAPENLEKFKEEINKSCS-CLNMQECKSSDELLGDIMPSEIDFELLEILEF 449 Query: 488 AGPWGQMFPEPLFDGHFRLLQ-QRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPD 544 P+GQ P P+F +++ +RL+G + HLK++++ L+ + FN + Sbjct: 450 YEPYGQKNPRPVFKIENAVVKNERLIGRDQNHLKLILQ--KDNKTLEALFFNFTRHV--- 504 Query: 545 NGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 V + + + N FRG + Q++I I Sbjct: 505 RVGEMVDVIFCVSKNSFRGLVTPQLLIREI 534 >UniRef50_A9BAH9 Single-stranded DNA-specific exonuclease n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BAH9_PROM4 Length = 625 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 153/553 (27%), Positives = 278/553 (50%), Gaps = 30/553 (5%) Query: 15 TADLPAELPPLLRRLYASRGVRSAQELERSVKGML---PWQQLSGVEKAVEILYNAFREG 71 + +P E+P +++ + RG+ ++ V+ P ++ A E + +A Sbjct: 17 SESIPKEIPHIIKSILLRRGLTHINDINDLVEPPDLPDPTDHFPDLDIASERIISAINNN 76 Query: 72 TRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQ 131 +I + GD+DADG TST+L V + L S I + +P+R E+GYGL+ +V++ G + Sbjct: 77 EKIAICGDYDADGMTSTSLLVDFLLRLDGSPIPF-IPSRKEEGYGLNRNIVEKIRREGIR 135 Query: 132 LIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAG 191 LI+TVDNG+S+ +E A+S GI VI++DHH + LP A+I+P+ + P K LAG Sbjct: 136 LIITVDNGVSAIYEIELAQSYGIDVILSDHHEIKENLPNLLALIHPSTIPYSSPYKYLAG 195 Query: 192 VGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQG 251 VG+A+ + + + + L+ DL +GTVAD+ L NR Sbjct: 196 VGLAYLIAQTIA----------IKRNSTDKLSLSKDLFCIGTVADMAKLKGANRYWLKSW 245 Query: 252 MSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 + K + G+K+LL A + + + D+ F + PR+N+ GR+ + S+ + L L + Sbjct: 246 TPNLINTKSK-GLKSLLSKAKLNNKNITTEDIAFRIAPRINSVGRISEPSLILKLFLEKD 304 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVG 371 R + N+++ +N+ RK + EA+++ E + + L + + WHQGV+G Sbjct: 305 HISIREIVNKIENINKERKLLCNQTTSEAISILES---NSEVLNPFIVLAQNHWHQGVIG 361 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 I+A++I ER++RP A +G L+ S RS + + AL++ ++ KFGGH+ Sbjct: 362 IVAAKIMERYNRPTAILASDKNGFLRASVRSPKSFNALAALKKCS----QILHKFGGHSA 417 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 A G +++ +K L Q + E + WL + + + + + ++T ++ L+ P+ Sbjct: 418 AGGFTIKAEKISLLQSKLNESASHWLS-NNSKPTIEPECYVEFDQITNQICNYLKLLEPF 476 Query: 492 GQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREV 550 GQ P PLF +L++ H ++ G ++ I +N + + Sbjct: 477 GQGNPAPLFWTRGCTILKKETFYSGH--QLLHLKQGKSIVKAINWNSNK---FTTYPSSI 531 Query: 551 QLAYKLD-INEFR 562 +A+ +D N F Sbjct: 532 DIAFYIDYENYFN 544 >UniRef50_C6V5J7 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Neorickettsia RepID=C6V5J7_NEORI Length = 577 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 186/564 (32%), Positives = 279/564 (49%), Gaps = 31/564 (5%) Query: 21 ELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLSGVEKAVEILYNAFREGTRII 75 L + + +R V + ++ + + L G+++ +E + A E +I+ Sbjct: 31 GLSLTVASVLYNR-VGADDDIATFLNPKLKHTLPDPFSLLGMKEGIERILRAISEDEKIV 89 Query: 76 VVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVT 135 + GD+D DGATS+AL R +G +D +P+R +GYG + Q G L +T Sbjct: 90 IYGDYDVDGATSSALLKNYFREIG-KKVDIYIPDRITEGYGPNKAAFMQLKKEGYTLCIT 148 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN---FPSKSLAGV 192 VD GI +HA +E A ++G+ +IV DHH+ D +P A A+INPN D + + LA V Sbjct: 149 VDCGILAHAEIEVANTIGLDIIVVDHHISADVIPPATAVINPNRIDQPNVAYT-EHLAAV 207 Query: 193 GVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGM 252 GV+F L++ L LR +G+FD N PNL LDLVALGTV DVV L NR QG+ Sbjct: 208 GVSFLLLIGLNVVLRAKGFFD--NKKEPNLINYLDLVALGTVCDVVRLTGINRAFVKQGL 265 Query: 253 SRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNI 312 I + G+ L + L A LG+ +GP +NA GR+ S+G LL N Sbjct: 266 KVI-DQRKNLGLSILTKELKL-FSTLEAYHLGYVIGPHINAGGRISQSSLGSRLLSTQNP 323 Query: 313 GEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGI 372 EA +A L LN RKEIE+ E +T EK + + WHQG++GI Sbjct: 324 AEAEEIATTLCVLNLKRKEIERAALQEVITQVEKTSKK------IILAASANWHQGIIGI 377 Query: 373 LASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMA 432 +ASRIK+ +H P I + G+ K S RSI+G ++ A+ + G++++ GGH MA Sbjct: 378 VASRIKDLYHLPTIILSIDGN-IAKASARSIKGANIGMAV--IAAKESGLIIEGGGHKMA 434 Query: 433 AGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWG 492 AG S E +K ++ F E E Q + D L +T ++ L+ P G Sbjct: 435 AGFSCETEKIPAIREFFEEYFKEV----DTQESIHIDSELYIDTITSDLCDDLKILAPHG 490 Query: 493 QMFPEPLFD-GHFRLLQQRLVGER-HLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREV 550 PEP F R++ R++GE H+ + V ++ GIAF D L EV Sbjct: 491 SGNPEPKFVLKDVRVVTSRVIGEDGHIACTLRDVRTHTVIRGIAFRADPILKEAILNCEV 550 Query: 551 -QLAYKLDINEFRGNRSLQIIIDN 573 K+ + + Q+II++ Sbjct: 551 TNFLVKIKADNLGYSNKPQVIIED 574 >UniRef50_C9RIN9 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIN9_FIBSS Length = 570 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 168/589 (28%), Positives = 287/589 (48%), Gaps = 50/589 (8%) Query: 12 VDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVEKAVEILYNA 67 V T ++P + R SRG+++ + + + + G++KAVE + Sbjct: 5 VASTLSSTLKIPHAVARFLVSRGIKTVSDAYHMLCSSESDVHDPFLMMGMDKAVEWILAV 64 Query: 68 FREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHA 127 G R+ + GD+D DG TS L ++++G + ++ +PNRF DGYGLS VD+ + Sbjct: 65 RERGERVFIFGDYDLDGMTSVTLLTRCLKTVGIES-EWRLPNRFGDGYGLSVSAVDEMYE 123 Query: 128 RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP-GDTLPAAEAIINPNLRDCNFPS 186 GA+ ++TVD GI+++ + HA+ LG+ V+V DHH P GD LP ++ +++P+ N+P+ Sbjct: 124 AGARNLITVDTGITANVEIAHAKELGMAVMVMDHHQPSGDGLPVSDVLLDPHQEGDNYPN 183 Query: 187 KSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRI 246 L GVGV++ + AL + L I E LDLVALGT+AD+V + NR Sbjct: 184 PELCGVGVSYKFICALFSRL-----------GIKAPVEYLDLVALGTLADLVQMTPENRY 232 Query: 247 LTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVAL 306 T G+ ++ + PG++ + + + D+ + L P LNA GR++ + L Sbjct: 233 FTRTGLESLKNSRW-PGVQEMYTSLMKPHSCVGGIDVMYKLAPLLNAPGRMERPDPALKL 291 Query: 307 LLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWH 366 LLC+N GEA L EL N RK+ E + A+ + L DT+P + + WH Sbjct: 292 LLCENKGEAGKLLEELKDWNARRKQKEAEITEMAMEQVKAL--YGDTIPTVIVVAGENWH 349 Query: 367 QGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKF 426 GV+GI+A+++ + FHRP + +G S R++ G + AL L+ ++ Sbjct: 350 VGVIGIVAAKLAQEFHRPSAVLSII-NGMAHASARAVPGFNWHKALFDSRELFD----RW 404 Query: 427 GGHAMAAGLSLEEDKFKLFQQRFGELVT------EWLDPSLLQGEVVSDGPLSPAEMTME 480 GGHA AAG SLE K + + R + E ++ D ++ E+T+E Sbjct: 405 GGHANAAGFSLEAGKIEELRGRLLQSAKDQGYTGEVINTDESYP---YDIKIALRELTVE 461 Query: 481 --------------VAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVG 525 + + + P+G FP P F + + + R + HL++ + Sbjct: 462 TRVPTGRYPIRERSILEFIDLLEPFGGNFPYPAFRAENVTVHRVRELRGGHLQMEISQA- 520 Query: 526 GGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 G + IAF + + R V + ++ N + +++Q+ I +I Sbjct: 521 GSAVFPAIAFGLRKSKALLGRSRPVTVVFEPIWNYYNNTKTVQLCIKSI 569 >UniRef50_C5B4H2 Single-stranded-DNA-specific exonuclease protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4H2_METEA Length = 614 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 178/559 (31%), Positives = 278/559 (49%), Gaps = 31/559 (5%) Query: 25 LLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIVVGD 79 L +++ RGV LE K ML L+ ++ A + A R G + ++GD Sbjct: 70 LPKQIALMRGVA-PSALETFFKPMLRTSMPDPSSLADMDAATARIAEAVRRGETVGLLGD 128 Query: 80 FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139 +D DGATSTA+ + + S G Y +P+R +GYG +P VD GA L++ +D+G Sbjct: 129 YDVDGATSTAIMLRWLGSAGHDKAVYYIPDRIREGYGPNPGAVDAIAEAGATLLLVLDSG 188 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI-INPNLRDCNFPSKSLAGVGVAFYL 198 +H + HAR+ G+ V+V DHH P TLP +AI +NP D +L G+AF L Sbjct: 189 TLAHGPIAHARARGMDVVVVDHHEPSRTLPLPDAILVNPKRPDDASGQTNLCTAGLAFLL 248 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 ++L LR +G+FD+ IA P+ +LL L ALGTVADVVPL NR + QG+ ++ Sbjct: 249 AVSLNRLLRAEGYFDQAGIAPPDPMDLLGLAALGTVADVVPLTGLNRAIVVQGLPKLDR- 307 Query: 259 KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVL 318 PGI+AL+E + GF GP +NAAGR+DD +G LL D+ GE R L Sbjct: 308 --NPGIRALVEETG--EGEFTPRTAGFVFGPCINAAGRIDDTRLGTLLLASDDPGETRDL 363 Query: 319 ANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIK 378 A L +N R+ +++ M A+ E + D + + WH G+VG++A+R++ Sbjct: 364 ARHLREINAQRQAMQKEMVEAAVARALSAEFADD---PVIVIEDRAWHPGIVGLVAARVR 420 Query: 379 ERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLE 438 E +P + G KGS RS+ G M A+ + G+++ GGH MAAGL++E Sbjct: 421 EATDKPAVVVGEFG----KGSCRSVDGFDMGTAI--IRAREQGILIAGGGHRMAAGLTIE 474 Query: 439 EDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEP 498 + + ++ + D ++E L P+G +P Sbjct: 475 AGRLEELRRFVCGAA-----FDFERPPTEVDVVAEAGTASVEAIAPLEALAPYGAGNQQP 529 Query: 499 LFDGHFRLL-QQRLVGERHLKVMVEPVGGGP---LLDGIAFNVDTALWPDNGVREVQLAY 554 + + R++ ERHLK+M+E G L + + + AL G+ V + Sbjct: 530 AVAVVGGIARRVRILKERHLKLMLEGPSGSTEAILFNAVGTRLGDALAASEGL-PVDVLG 588 Query: 555 KLDINEFRGNRSLQIIIDN 573 ++ ++EF +QI ID+ Sbjct: 589 RMAVDEFNAQARVQIKIDD 607 >UniRef50_Q1QT56 Exonuclease RecJ n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QT56_CHRSD Length = 599 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 186/577 (32%), Positives = 281/577 (48%), Gaps = 23/577 (3%) Query: 17 DLPAELPPLLRRLYASRGVRSAQEL----ERSVKGMLPWQQLSGVEKAVEILYNAFREGT 72 A L L R+ A R A ++ + S++ + ++L +A E + A EG Sbjct: 29 AQAAGLSELQARVLAGRLNAYAGDIAPLVDPSLRYLTHPERLQDARRAAERIAQAVAEGE 88 Query: 73 RIIVVGDFDADGATSTALSVLAMRSLG---CSNIDYLVPNRFEDGYGLSPEVVDQ--AHA 127 I ++ D+D DG TS + + + L + L+ +R DGYG+S +V++ A + Sbjct: 89 HIGILTDYDVDGITSHVVILRTLNELFGVPLHKLHSLIGHRIFDGYGISLPLVERTLALS 148 Query: 128 RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAA--EAIINPNLRDCNFP 185 L++T D G S + G+ V+VTDHH + P A A +NP DC++P Sbjct: 149 PRPSLVITADCGSSDEPRIARLHEAGLDVVVTDHHALPASGPPASAYATVNPTRADCDYP 208 Query: 186 SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA--N 243 ++AG VA+ M R+ L +QG + P L+ L VALGTVAD V L Sbjct: 209 DPTIAGCMVAWLTMSLTRSVLIEQGVAS---PSTPKLSPWLSYVALGTVADCVSLGDSPA 265 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NR + G++ I + + + E D+ A L F +GPR+NA RLDD Sbjct: 266 NRAVVSHGLTLINRMEA-ACWRVMAERLGTDSVPFDAETLAFQMGPRINARSRLDDPYAA 324 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 + +L + AR LD NQ+RK IE M A +L + + ++ Sbjct: 325 LHFMLAADDATARRHLEVLDTDNQSRKAIESDMVERARSLALEALAEG---ASAIVVFLE 381 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGM 422 + H GV GI+ASR+ + F RP + PA G L GSGRSI+GLH+RDAL+R L P Sbjct: 382 DGHAGVQGIVASRLVQAFGRPTLVLTPAAAAGMLTGSGRSIEGLHLRDALQRAHELAPEA 441 Query: 423 MLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVA 482 + +FGGH AAG+ + ++ F+ F V E L L V++DG L PA++++ Sbjct: 442 LPRFGGHRGAAGVGVPRERLTAFRDAFLTAVEEQLGGRDLFPYVLTDGALEPAQLSLASV 501 Query: 483 QLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT--A 540 L P+G+ F PLF+G FR+ Q R VG +M+E G I F T Sbjct: 502 DELARLAPYGREFDAPLFEGEFRIEQLRAVGADGNHLMLELSMGPVSHRAIWFRALTPGE 561 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 + + AYKL N ++G SLQ++I++ P+ Sbjct: 562 VPAFGPGDRLHCAYKLARNRWKGRESLQLMIEHAEPV 598 >UniRef50_Q6MKZ4 Single-strand DNA-specific exonuclease n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MKZ4_BDEBA Length = 575 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 163/584 (27%), Positives = 285/584 (48%), Gaps = 21/584 (3%) Query: 1 MKQQIQLRRREVDETA--DLPAELPPLLRRLYASRGVRSAQELE----RSVKGMLPWQQL 54 M LR E + ++ + P L+ ++ A+RG A +E + + L Sbjct: 1 MNPLWTLRESENEPVIPSNVEGQWPKLITKVLAARGFAEASHVEKLLFPKLADLKDPLVL 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 G+ +A+E L A+ +I + DFD DG + AL M +LG ++ + P R +G Sbjct: 61 KGMSQALERLGQAYLNKEKICIYADFDLDGTSGLALLKTGMLALGFPDVLHYQPKRLAEG 120 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG V++ +G LI+TVD GI++HA ++ A LG+ VI+TDHHLP DT+P+A + Sbjct: 121 YGFHAHAVEELKKQGVSLIITVDVGITAHAAIDKANELGVDVILTDHHLPADTIPSAFVV 180 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NPN DC L G GVAFYL+ L+ D + N +L E+LD +GT+ Sbjct: 181 VNPNQGDCPSGLGYLCGAGVAFYLLRGLKRHFHDHPQLPKNNW---DLKEVLDYFTIGTL 237 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 D+VPL +NR+L G+ ++ K R G++ALLE + + L + D+ P+LNA Sbjct: 238 TDMVPLVDDNRVLVKHGLVKLAETK-RAGLRALLEELDLTGRPLTSQDVAIRFAPKLNAL 296 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 R++ + + + L D+ +AR + ++ N TR +++ + EA L + Sbjct: 297 SRMESGILPIDIFLLDDPSQARDMVRQVMKNNSTRVQLQGDAEAEAQQLLQGWPHQD--- 353 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 + + +H+GV+G++A+++ + +++P A DG + GS R QG L Sbjct: 354 --FVFVASRNFHRGVLGLIATKLTQVYNKPAFVGAVGDDGMIVGSARLPQG--QEACLVE 409 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + ++ +FGGH+ AAG + E K F + + ++ L E+ D Sbjct: 410 AMSSAQELLSRFGGHSAAAGFEIAETKVSTFVGKLADHFSD-LREKPKPLEIFYDVEAGL 468 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 +E++ + + GP+G F PL + ++L +R + HL++ + GG + + Sbjct: 469 SEVSEALMKWYDFVGPFGAGFSIPLIHFTNVQVLSKRELKGGHLRLKIADADGGASAEAL 528 Query: 534 AFNVDTALW--PDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 F N + +L N F G +++QI+I ++ Sbjct: 529 LFTPTPRQLDTLTNVPGFYHVLGELQWNYFAGQKTVQILIRDLK 572 >UniRef50_B5ZFU4 Single-stranded-DNA-specific exonuclease RecJ n=12 Tax=Acetobacteraceae RepID=B5ZFU4_GLUDA Length = 619 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 197/569 (34%), Positives = 286/569 (50%), Gaps = 23/569 (4%) Query: 16 ADLPAELPPLLRRLYASRGV---RSAQELERSVKGMLP-WQQLSGVEKAVEILYNAFREG 71 A + ++ ++ A+RG+ +A L+ +++ ++P L ++ A E L +A R G Sbjct: 58 IAQQAGVSDIVGQMLAARGLDGRSAATFLDPTLRALMPDPSALRDMDPAAERLADAVRRG 117 Query: 72 TRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQ 131 + V GD+D DGA + AL +R LGC + VP+R +GYG + ++ ARGA Sbjct: 118 ETVAVFGDYDVDGACAAALVTQLLRDLGCP-VLTHVPDRMTEGYGPNAPALEALAARGAT 176 Query: 132 LIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAG 191 L+V VD G ++ + +IV DHH P A +NPN DC + L Sbjct: 177 LVVCVDCGTAAGDILAGLAGR-ADIIVLDHHKAEGPPPPVLATVNPNRLDCTSGQRGLCA 235 Query: 192 VGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQG 251 GVAF +A LR GWF R P+L LD+VAL TV DV+PL NR L QG Sbjct: 236 AGVAFLAAVATVRTLRRAGWFAAR--PEPDLMAFLDIVALATVCDVMPLTDLNRALVTQG 293 Query: 252 MSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 + I A + R G+ ALLEVA L+A GFALGPR+NA GR+ + +G+ LLLCD+ Sbjct: 294 LK-ILARRQRTGLDALLEVAG-ARDPLSAFTCGFALGPRINAGGRIAESGLGLDLLLCDD 351 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVG 371 EAR LA LDA+N+ R+ +E + A+ ++ R G L + +WH GVVG Sbjct: 352 AAEARRLAERLDAVNRRRQTVETTILDRAM---DEAASQRAAGRGVLLLSGRDWHPGVVG 408 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 I+A RIKERF+RPV+ A DGT+KGS RS+ L + A+ + G++ GGHAM Sbjct: 409 IVAGRIKERFNRPVLVGAELEDGTVKGSSRSVADLDLGAAI--IAARQAGLLTTGGGHAM 466 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 AAG SL + + +V+ +G + A T E+A + P+ Sbjct: 467 AAGFSLPREGVPALHDFLEARLA-GATALPDATDVLIEGVVHVAGATTELATDIGRLAPF 525 Query: 492 GQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTA----LWPD 544 G EP+ R+++ +G L+V+VE GGGP L + F D + D Sbjct: 526 GAGNDEPILAIPRVRVVRADRIGREGNTLRVLVEGEGGGPRLKALLFRADDHPATPILED 585 Query: 545 NGVREVQLAYKLDINEFRGNRSLQIIIDN 573 + LA L + G S I + Sbjct: 586 RNAPPLHLAGWLRAESWNGRVSAGFFIRD 614 >UniRef50_Q6ALW7 Related to single-strand DNA-specific exonuclease n=1 Tax=Desulfotalea psychrophila RepID=Q6ALW7_DESPS Length = 552 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 173/558 (31%), Positives = 267/558 (47%), Gaps = 22/558 (3%) Query: 26 LRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 + ++ + RG + AQ +E + + + G+++AV + A EG I++ GD+D Sbjct: 7 IEQILSLRGYQEAQAIEEFLSPRLSSLPHPFTMLGMKEAVAEVLRAIDEGLPILIWGDYD 66 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA-HARGAQLIVTVDNGI 140 DG T T++ V + + + +P+R +GYGL+ A L++TVD GI Sbjct: 67 VDGTTGTSILVNFFERIDV-KVYWHIPSRLTEGYGLNLTYFQNLPWAEEHFLLITVDCGI 125 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 S+ +E + G VIVTDHH +P ++NP+ C F SLAGVGVAFYL+ Sbjct: 126 SNATEIEAIKKRGGRVIVTDHHQLPKRVPNCT-VLNPSNEKCPFYGTSLAGVGVAFYLVA 184 Query: 201 ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKC 260 +R L + + + PNL L VA GT+ADVVPL NR+L G+ + Sbjct: 185 GVRNALVSGELNGKYSQSTPNLKSFLGFVAFGTLADVVPLTPVNRLLVKAGVESFARTE- 243 Query: 261 RPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLAN 320 G++ALLE ++ + + D+GF L P++NAAGR V LL A +A Sbjct: 244 FIGLQALLESSDIADGSVTSDDIGFNLAPKVNAAGRYGVAHQVVELLTSKEAEPAYKIAK 303 Query: 321 ELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKER 380 L LN RK + + E + E L + ++ +G++GILASR+ +R Sbjct: 304 TLTKLNNDRKLLCK----ENMAEIETLLHIETIKADACIIVEGDFFEGILGILASRLVDR 359 Query: 381 FHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEED 440 FH P I F+ A DG LKGS RSI+ +++ D + L + KFGGH MAAG+S+ Sbjct: 360 FHLPAIVFSRAADGDLKGSARSIEEINILDVITETSFL----LKKFGGHKMAAGMSMSPL 415 Query: 441 KFKLFQQRFGE-LVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPL 499 F F+ F E L + + D + + L + P+G P+P Sbjct: 416 NFAAFRSAFVENLQRAEVKEIKQESRYELDASVE-QVFNPDSLALYQKMEPFGPGNPQPT 474 Query: 500 F-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKL 556 F D H ++ R VG + HL++ + G + I FN+ V++ + Sbjct: 475 FYDAHALIVAARPVGQSKEHLQLTIRGKYGDN-IKAIGFNLGEKGRNVIAGSTVKIIFTP 533 Query: 557 DINEFRGNRSLQIIIDNI 574 IN F+ S Q I +I Sbjct: 534 TINRFKERVSWQARILDI 551 >UniRef50_Q7MAI2 PUTATIVE SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE EC 3.1 n=1 Tax=Wolinella succinogenes RepID=Q7MAI2_WOLSU Length = 534 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 178/560 (31%), Positives = 282/560 (50%), Gaps = 43/560 (7%) Query: 23 PPLLRR-----LYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 PPLL + + + R A++ +K + ++L G+ +A +++ A ++ RI+V+ Sbjct: 7 PPLLGKREIESILSQR---FAKDRFCRLKDLPSPEKLHGIPQACDLIIEAMQQKRRIVVI 63 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG STA+ V L I ++PNRF DGYGLSP ++++ LI+TVD Sbjct: 64 GDYDVDGIVSTAIMVDFFHRLSYP-ITSVIPNRFCDGYGLSPALIERLE---TDLIITVD 119 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 NGI +H + + GI +I+TDHH P LP A+ IINP L C+FP K + G VA+Y Sbjct: 120 NGIMAHEAAKICQERGISLIITDHHTPPLELPCAKVIINPKLSCCSFPQKEICGASVAWY 179 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 L AL+ L + ++ E LDL+AL +ADV+PL NR+L QG+ + Sbjct: 180 LCAALKGRLEAK----------IDMGEFLDLLALAIIADVMPLVEVNRLLVRQGLKEMAR 229 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 R L E + D+ F + P LN+AGR++D S+ + LL D+I EA Sbjct: 230 SN-RAAFVVLKE--KLRKSHFSGEDVAFLIAPLLNSAGRMEDASLSLEFLLSDSILEAGE 286 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 + L ALN RKE E + EAL D L Y +WH+GV+GI+ASR+ Sbjct: 287 KFDRLCALNCLRKETESRLFEEALGQI-------DLCGEALLAYGEDWHEGVLGIVASRL 339 Query: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 +R+ +P +G+LKGS RS+ L + L++ ++L++GGH AAG+ L Sbjct: 340 TDRYKKPAFILTQ-KEGSLKGSARSVGELDLVRLLQK----SHHLLLRYGGHKGAAGIQL 394 Query: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGE-VVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 + F+ F+Q E ++ + + E G ++ + E+ +L P+G+ P Sbjct: 395 RRENFESFKQAIEEELSRLKERIEWRCEGEECLGEIALESVDAELLDILERFEPYGEGNP 454 Query: 497 EPL-FDGHFRLLQQRLVG-ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAY 554 +P F R+ + ++VG E++ +V G IAF P + + Sbjct: 455 KPRFFCKEARVCRYKIVGAEKNHTSLVLKNPSGNERKAIAFRQVYEFAPLAS---ISCLF 511 Query: 555 KLDINEFRGNRSLQIIIDNI 574 L + F Q+II+ + Sbjct: 512 SLSRDIFSAESIPQLIIERL 531 >UniRef50_P73518 Single-strand-DNA-specific exonuclease; RecJ n=1 Tax=Synechocystis sp. PCC 6803 RepID=P73518_SYNY3 Length = 759 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 170/583 (29%), Positives = 272/583 (46%), Gaps = 53/583 (9%) Query: 25 LLRRLYASRGVRSAQELERSVKGML-----PWQQLSGVEKAVEILYNAFREGTRIIVVGD 79 +L RG++SA +L + PW+ ++ AV+ L A + ++ + GD Sbjct: 33 FAAQLLWQRGIQSADQLGGFLSPDCYTPTSPWEFGQEMKWAVQRLGQAMAQKEKVTIWGD 92 Query: 80 FDADGATSTALSVLAMRSLGCSN--IDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 FDADG TSTA+ + + + Y +PNR + +GL+ +++ +G +LIVT D Sbjct: 93 FDADGITSTAVLWEGLGQFFPQDSQLTYTIPNRLRESHGLNRPGLERLATQGTKLIVTCD 152 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 G ++ + +A+ LG+ VIVTDHH D P AIINP P +L+GV VAF Sbjct: 153 TGSTNLDEIVYAQQLGMDVIVTDHHTLPDDRPEVVAIINPRYFADGHPLFNLSGVAVAFK 212 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 L+ AL + L +LLDLVA+G +AD+V L + R L +G++++R Sbjct: 213 LVEALYNQYPT--------VPQQPLEDLLDLVAIGLIADLVTLQGDCRYLAQRGIAQLRT 264 Query: 258 GK-----CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL-DDMSVGVALLLCDN 311 K RPGI ALL + NR+ + +D+GF +GPR+NA R+ D S GV LL + Sbjct: 265 QKDPATATRPGIHALLNLCNRNGDR--PTDIGFGIGPRINAISRIKGDASFGVELLTSRD 322 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVG 371 LA E + LN RK +++ + IE + ++ S G + + P+W GV+G Sbjct: 323 TKVCNQLAAEAETLNSRRKGLQKSVIIEIDQRLQNIDLS---TTGVVVLTDPQWPTGVLG 379 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 + AS + + RP I KGS RS+ + + L L ML FGGH Sbjct: 380 LAASHVAQTCGRPAILLNTQDGKIAKGSARSVANIDLYALLHSQRHL----MLGFGGHPF 435 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSL-LQGEVVSDGPLSPAEMTMEVAQLLRDAGP 490 AAGLSL DK LF + + + + L + D + A++ ++ + P Sbjct: 436 AAGLSLPLDKLPLFTEAVNQQFWQSYGAQISLDPILAVDLQVKVADLGQDLFREFNLLEP 495 Query: 491 WGQMFPEP-LFDGHFRLLQQ--RLVGER------HLKVMVEPVGGGPLLD---------G 532 +G P P L + ++ + R + +R +LK P D G Sbjct: 496 YGMGNPAPKLLLENVQVGRPSFRNIKDRTGNKVSYLKTSFRVTDYPPKTDDDGQVVQCPG 555 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + P N + L +LD N + +R ++ + + Sbjct: 556 VWWGHHPDELPQN--EPLDLVVELDFNTY--DRQYEVRLIDFR 594 >UniRef50_Q30NS6 Exonuclease RecJ n=3 Tax=Epsilonproteobacteria RepID=Q30NS6_SULDN Length = 537 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 157/538 (29%), Positives = 269/538 (50%), Gaps = 37/538 (6%) Query: 42 ERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCS 101 E+ + + L KA + + +A RE +I +VGD+D DG ++TA+ V R + Sbjct: 33 EKKLSHIPDPSLLHDAPKAAKKIADAIRENKKITLVGDYDVDGVSATAIMVDFFRQIPYP 92 Query: 102 NIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDH 161 ++ ++PNRF DGYG+SP ++++ LI+TVDNGI++ E GI +I+TDH Sbjct: 93 -LEAVIPNRFSDGYGVSPHLLERI---DTDLIITVDNGITALEAAEICAQRGIELIITDH 148 Query: 162 HLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPN 221 H P TLP A AIINP L C++P + + G VA+ + + Sbjct: 149 HTPLTTLPHAYAIINPKLSACSYPFQEICGAQVAW----------LLLALLKKELNLNID 198 Query: 222 LAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAAS 281 + LD++ + +AD++PL NR L G+ + + R + + N+ + +++ Sbjct: 199 MRSFLDILCIAIIADIMPLTDINRPLVKDGLKVLMSSN-RASCVIIRDFLNK--KNISSE 255 Query: 282 DLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEAL 341 D+ F + PR+N+AGRL+D S+ + L + +A + L++LN++R+E+E EAL Sbjct: 256 DIAFQIAPRINSAGRLEDASIALEFLTAQTLNKAYMQFEILNSLNESRRELEAEATKEAL 315 Query: 342 TLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGR 401 ++ ++ + + EWH+GVVGI+A+R+ E + RP I +G KGS R Sbjct: 316 SIANGNDK-------VIVVAKEEWHEGVVGIVAARVAEHYTRPTIVLT-LENGVAKGSAR 367 Query: 402 SIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSL 461 S+ +++ +E + KFGGH MAAGL+L E F+ E ++ L Sbjct: 368 SVGNVNIHKLIEE----NSHFLRKFGGHKMAAGLTLNEKDIDAFRVAINESASK-LSLDD 422 Query: 462 LQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGER--HLK 518 G + ++ +E+ LL P+G+ PLF +L+ + G+ H K Sbjct: 423 FLSLDEVIGVVPSNQIDLELLALLESFEPYGEANKRPLFLIRDASILEVKTFGKDSSHSK 482 Query: 519 VMVEPVG-GGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 V + +L+ I F + + ++ +Y++ NEF S Q+IID I+ Sbjct: 483 VKIMQSNEESSILELIQFK---KILNLSTADKLTCSYRVVKNEFNSKISAQLIIDKIY 537 >UniRef50_B9L7S0 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Nautiliaceae RepID=B9L7S0_NAUPA Length = 520 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 169/563 (30%), Positives = 288/563 (51%), Gaps = 64/563 (11%) Query: 26 LRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGA 85 +R + ++R +EL S + + LS ++KA + + NA + +I+VVGD+D DG Sbjct: 7 IREILSNR----IEEL--SSSNLPHFLLLSDIKKASKRVVNAIKNKEKIVVVGDYDVDGV 60 Query: 86 TSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAG 145 +S+A+ L + +I+ ++P+RF+DGYGL+P ++++ A LI+TVDNGI+S Sbjct: 61 SSSAIMKLFFEKIKF-DIEVVIPDRFKDGYGLTPGLLERIE---ADLIITVDNGITSFEA 116 Query: 146 VEHARSLGIPVIVTDHHLP--------------GDTLPAAEAIINPNLRDCNFPSKSLAG 191 E + + +I+TDHH P LP A AIINP +FP K + G Sbjct: 117 AEICKQKRVDLIITDHHTPLIMDKVKCNMENEERFKLPDAYAIINPKTSP-DFPFKEICG 175 Query: 192 VGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQG 251 VA+YL A+++ ++ + +L E D++A+ +ADV+PL NR L G Sbjct: 176 AEVAWYLCAAIKSEMKLK----------IDLREFTDILAIAIIADVMPLTHMNRTLVNMG 225 Query: 252 MSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 + R+ +P KAL N+D + A D+ F + PRLNAAGR+ V L+ N Sbjct: 226 LKRLNKA-VKPFSKALKRFFNKDFK---AEDIAFQIAPRLNAAGRMFHAGVAYEFLISKN 281 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVG 371 +A L ELD LN RKE E+ EA+ E++ + ++H+GVVG Sbjct: 282 EQKAFDLLMELDGLNNLRKETEK----EAVESIEEITDD-------FIIVKGDFHEGVVG 330 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 I+ASR+ ++ +P I F +G LKGSGRS+ + + + L + FGGH M Sbjct: 331 IIASRLVHKYKKPAIVFC-ENNGILKGSGRSLGNIDIFSLVNECKEL----LEGFGGHKM 385 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 A GLSL+E+ F+ ++ ++++ + V G L E+ +E+ +L++ P+ Sbjct: 386 ACGLSLKEENFEELKKVLNNKISKYSKDDFFIEDYVL-GELPFKEIDIELLDILQEFEPF 444 Query: 492 GQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQ 551 G+ P+P F + ++ + + E H K+++ +L + F + + Sbjct: 445 GEGNPKPKFIANAKIEHVQNLKENHFKLILSQDD--IVLPAVIFRFEGEFKDSLYFK--- 499 Query: 552 LAYKLDINEFRGNRSLQIIIDNI 574 + ++ N + G S+Q++I+ I Sbjct: 500 --FSINENSYYGR-SVQLMIEEI 519 >UniRef50_C7H0U6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0U6_9FIRM Length = 542 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 156/561 (27%), Positives = 278/561 (49%), Gaps = 32/561 (5%) Query: 23 PPLLRRLYASRG--VRSAQELE-RSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGD 79 + R+ + R + +E + + P +L +++AV + A +I + GD Sbjct: 4 SKVFSRILSLRKDIIGDPEEFFSPTPQLTHPADELYSIDEAVSRIAKACENNEKITIYGD 63 Query: 80 FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139 +DADG TST + + +++ G ++++Y +P+R ++GYG+S E +++ G LI++VD G Sbjct: 64 YDADGVTSTGIMFMFLKAAG-ADVEYYIPSRMDEGYGISIEAINKIKETGTTLIISVDCG 122 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199 +S+ E+A S+G+ V++TDHH D +NP + +AGVGVAF ++ Sbjct: 123 SNSYEEAEYAESIGMDVVITDHHTV-DKHHYEGINVNPKHPKSSCAFPQIAGVGVAFKVL 181 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 L+ L N+ L E LDLVA+GT+AD++P+ NR G+ ++ Sbjct: 182 QQLQRKL---------NLDKRVLLETLDLVAIGTIADIMPVYDENRTYIKYGLLKMNKNP 232 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 G++ LL +++ + D+ F + P +NAAGRL++ S+GV L + D+ A LA Sbjct: 233 -NLGLRCLLRELGIADREIKSDDVSFRIAPCINAAGRLENASIGVELFITDDEKRAMTLA 291 Query: 320 NELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKE 379 +L LN RKE++ + + ++ + L + H GV GI++ ++KE Sbjct: 292 RDLVNLNTKRKELQVAEVKRSKEKMVETGADKNAILLTL-----DIHSGVAGIVSGKLKE 346 Query: 380 RFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEE 439 F + I GDG LK SGRS + + L + LY + FGGH+ A G ++++ Sbjct: 347 DFGKVAIVMVDTGDGYLKASGRSPDAIDLYQLLLKFQDLY----VNFGGHSAACGFTIKK 402 Query: 440 DKFKLFQQRFGELVTEWL--DPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPE 497 +F++RF V + + DP L+ D + ++M +E+A L+ P+G++ + Sbjct: 403 SDENVFRERFYRAVDDMVEADPGSLKKNYKYDLKVDVSDMNLELASELKMLEPYGKLNED 462 Query: 498 PLFD-GHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFN-VDTALWPDNGVREVQLA 553 F +G RH+K ++ L+ + FN + + + + Sbjct: 463 IRFLIEDVVPFNMIYLGRDSRHIKFFLKQARN--TLECMCFNAAAEVINMIEEQKHISII 520 Query: 554 YKLDINEFRGNRSLQIIIDNI 574 K NE+RG S QI + +I Sbjct: 521 GKFGANEYRGKLSPQITVSDI 541 >UniRef50_A5VFK4 Single-stranded-DNA-specific exonuclease RecJ n=10 Tax=Sphingomonadales RepID=A5VFK4_SPHWW Length = 588 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 193/578 (33%), Positives = 294/578 (50%), Gaps = 25/578 (4%) Query: 8 RRREVDETADLPAELPPLLRRLYASRGV-RSAQELE--RSVKGMLP-WQQLSGVEKAVEI 63 R + D E L+ +L +RG R A EL +++G +P +++A Sbjct: 19 WRGGTVDGIDAGFEADDLITQLLLARGCPREAVELHRLPTIRGFMPDPSIFRDMDEAAAR 78 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 L +A G + + GD+D DGATS AL + +R LG + +P+R +GYG S E + Sbjct: 79 LADAVEHGEPVTIFGDYDVDGATSAALLIRLLRDLGL-RAGFYIPDRLMEGYGPSGEALL 137 Query: 124 QAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 + G +LIVTVD G + ++ A GI VIV DHH LP A A++NPN D Sbjct: 138 KIGEGGTRLIVTVDCGAQAFEALKLASDAGIDVIVVDHHKCAAELPRAFALVNPNRLDEG 197 Query: 184 FP--SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 LA VGVAF L AL LR + +F R A P L +LLD+VALGTVADV L Sbjct: 198 EGAAHGHLAAVGVAFLLGAALLRVLRARNFFATR--AEPKLIDLLDIVALGTVADVASLR 255 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NR QG+ + AG+ G+ AL+E + + +DLGFALGPR+NA GR+ Sbjct: 256 GLNRAFVAQGIKVM-AGRRNIGLAALIEASRLERAP-TCTDLGFALGPRINAGGRVGKSD 313 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 +GV LL ++ EAR +A ELD LN+ R+ IE+ +Q EA TL + Sbjct: 314 LGVRLLTTEDRDEARTIAAELDRLNEERRAIEKAVQEEAETLSGSQGNRSVA-----VVA 368 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 WH GV+GI+A R+KE+ RP + A DG KGSGRSI G+ + A+ + G Sbjct: 369 AGGWHPGVIGIVAGRLKEKLGRPALVIALDKDGVGKGSGRSIGGVDLGAAILAAKDM--G 426 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 +++ GGHAMAAG+++ E + + + ++ D ++P +T + Sbjct: 427 LLVAGGGHAMAAGVTVAPGGVDALADFLEERLASDVARARDDRALLLDAVVAPGGVTPSL 486 Query: 482 AQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV--- 537 + L GP+G +P P G R+++ +VG+ H++ +V G + IAF Sbjct: 487 VEALEAGGPYGAGWPAPRIAAGAVRVIKADVVGQGHVRTIVSGRD-GRSIKTIAFRAADS 545 Query: 538 --DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 AL R + +A + ++++ + ++ +++ Sbjct: 546 ALGQALLGAGPDRTLWIAGRPKVDDWGSRPAAELHVED 583 >UniRef50_Q2JMF8 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Synechococcus RepID=Q2JMF8_SYNJB Length = 758 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 176/602 (29%), Positives = 287/602 (47%), Gaps = 50/602 (8%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSG 56 M+ + +L L E ++ A RG+ + ++ + V P L Sbjct: 1 MEYRWELLPTPPQFNPQLSREYGKYAAKVMALRGLHTWEQAQAFVDPEHYSPTPPASLPD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +E+AV L A + + GDFD DG TST+L + A++ LG + + +P R +G+G Sbjct: 61 LERAVARLLQAREREETLCIWGDFDCDGVTSTSLLLSALQPLGF-RVQFSIPLRSTEGHG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+P+ + Q A+G Q+I+TVD G+ + A + A++ G+ VIVTDHH+ D LPAA A++N Sbjct: 120 LNPQRLQQVLAQGCQVILTVDCGVGNAAEIAMAQAQGVDVIVTDHHMLPDPLPAAYAVVN 179 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P P + L GVGVA+ L AL L IP + + LDLVA+G VAD Sbjct: 180 PLRLPAEHPLRFLPGVGVAYKLAEALYQAL-----------GIPGVEQHLDLVAVGIVAD 228 Query: 237 VVPLDANNRILTWQGMSRI---RAGKCRPGIKALLEV--ANRDAQKLAASDLGFALGPRL 291 V L R L +G+ + + RPG++ALL + A D+ F + P+L Sbjct: 229 VAVLQRECRYLVQRGLPVLASTQPSTQRPGLQALLARVDNGQSQGVPTAQDIAFRIAPKL 288 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 N GRL+D S+ V LL + A+ L AL++ R+++ Q + EA E L+ +R Sbjct: 289 NVIGRLEDASLAVELLTTSDPERAQALVQRFVALDEERRQLTQQVIQEASQQVESLDLTR 348 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG-DGTLKGSGRSIQGLHMRD 410 + G + + W+ GV+GI A+ + E+++ P + A G GSGRS+ G+++ + Sbjct: 349 E---GAIVLAEAGWNPGVLGIAAAHLVEQYNCPTVLIAKDEAAGRGYGSGRSLPGVNLVE 405 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSL----LQGEV 466 A+E + L + + GGH MAA + ++ Q + + P L E+ Sbjct: 406 AIEAVRPL----LRRGGGHPMAARIQVDLACLAAVQLALQRELAARVSPDQQARALAVEI 461 Query: 467 VSDGPL-------SPAEMTMEVAQLLRDAGPWGQMFPEPL-----FDGHFRLLQQRLVGE 514 + D L AE+ EV + L+ P+G P P+ F + L G Sbjct: 462 ILDWELLVSQDRDGVAELD-EVYRQLQLLQPFGHGNPNPVVALMNFRPNSSNLGVSRNG- 519 Query: 515 RHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 RHLK ++ G L + L + + +A +L+ ++ RG + Q + + Sbjct: 520 RHLKFELQGSPGSRTL--WFWQAGEELERWQKCQALDIALQLEADD-RGKQPWQGKVLAV 576 Query: 575 WP 576 P Sbjct: 577 RP 578 >UniRef50_B4WFY1 Single-stranded-DNA-specific exonuclease RecJ, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WFY1_9SYNE Length = 817 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 162/584 (27%), Positives = 267/584 (45%), Gaps = 54/584 (9%) Query: 27 RRLYASRGVRSAQELERS-----VKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 RL +RG+R+A+ L P+ + KAV L A ++ + GDFD Sbjct: 38 ARLLWARGIRTAEALRGFCWPSAYTPASPFAFGEEMTKAVARLMLARDRVEKVAIWGDFD 97 Query: 82 ADGATSTALSVLAMRSLGCS--NIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139 ADG TSTA+ ++ + Y +PNR ++ +GLS +DQ A+ LIVT D G Sbjct: 98 ADGITSTAVLWDGLKQFFDEPGQLTYFIPNRLKESHGLSIVGIDQLAAQDVTLIVTCDTG 157 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199 ++ +++A SLG+ VIV+DHH P AI+NP + P +L+GV +A+ L+ Sbjct: 158 STNPDEIDYAHSLGLEVIVSDHHTLPAVRPNVVAIVNPRALPSDHPMANLSGVAMAYKLV 217 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG- 258 AL L D + L+EL DLVA+G +AD+V L + R L G+ +++ Sbjct: 218 EALYERLPD--------VPTRPLSELTDLVAIGLIADLVELTGDCRYLAQVGIEQLQTHL 269 Query: 259 ----KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL-DDMSVGVALLLCDNIG 313 RPG+ LL++ R + +D+ F +GPR+NA R+ + S V LL + Sbjct: 270 KSAYPIRPGVAQLLKLCRRAGDR--PTDISFGIGPRINAVSRIYGEASFCVELLTSQDSD 327 Query: 314 EARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGIL 373 + LA + + N RK ++ + +A E + S G + + P+W GV+G++ Sbjct: 328 RCQDLAEKTELANTRRKALQNDVLKQATHQLETRDLS---TTGVIVLCDPQWPVGVLGLV 384 Query: 374 ASRIKERFHRPVIAF---APAGDG---TLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 A+++ +++ RP I PA DG ++GS RS+ + + D + L + FG Sbjct: 385 AAQVAQQYGRPTILLTQDTPADDGDDVLVRGSARSVNQIDLYDLVSSQAHL----LTGFG 440 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRD 487 GH AAGLSL +FQ + + + L V D ++ AE+ ++ Q L+ Sbjct: 441 GHPYAAGLSLPAKDLPMFQAAINQQYRQKMGAELSSPVVQVDLSVTVAELGQDLFQELKL 500 Query: 488 AGPWGQMFPEPLFDGHF--------RLLQQRLVGE-RHLKVMVEPVG------GGPLLDG 532 P G P P + L+ R G+ ++K E G Sbjct: 501 LEPCGMGNPVPKLLIQNCWFENVWHQKLKDRTGGKVGYIKTSFELCDESGNHKSSSKFPG 560 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + + D + +LD N +R ++ + +I P Sbjct: 561 LWWGH---YKEDVPPGRWDVVAELDYNSHPKSRRYEVRLIDIRP 601 >UniRef50_B2V9Q3 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Aquificales RepID=B2V9Q3_SULSY Length = 574 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 168/589 (28%), Positives = 281/589 (47%), Gaps = 42/589 (7%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGV-----RSAQELERSVKGMLPWQQLSGV 57 Q I L + L + + ++ +R S + +K ++ + Sbjct: 9 QWIDLSKTNPAPDF-LVKKYGEIFAQVLYNRRDLFDKDFSQDYIFPELKNLVNPSYFHSL 67 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 E+A L + T I+V GD+DADG TST+L + + LG N Y +P+RF +GYGL Sbjct: 68 EEAAIKLAEHIKRKTPIVVYGDYDADGITSTSLLINFFKDLGV-NAKYYIPSRFSEGYGL 126 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP--------GDTLP 169 + E + + G ++++ D+G ++ + +A+SLG+ V V DHH P L Sbjct: 127 NKEAIKKLSEHG-KVLIVCDSGTNAFDELFYAKSLGLEVFVLDHHEPSYLWQNYTPPFLS 185 Query: 170 AAEAIINPNLRDC---NFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL 226 IINP N K LA VG+AFYL+ R L L + L Sbjct: 186 EKINIINPKFYSDEQINPLFKHLATVGIAFYLIAITRRLLNID----------IKLRDYL 235 Query: 227 DLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFA 286 D+VA+GTVADVVP+ NR++ G+ + K R GIK LL VA ++L + D+GF Sbjct: 236 DIVAIGTVADVVPMSFINRVMVKIGLEELNKQK-RAGIKELLNVARV-KKELTSQDIGFI 293 Query: 287 LGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK 346 +GPR+NA+GRL D V LL+ + A VLA EL+ LN+ R+++ + EA + Sbjct: 294 IGPRINASGRLADARNSVKLLVTRDQSRANVLAIELENLNKKRQKLTDNVISEA-----E 348 Query: 347 LERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGL 406 E + L + + WH GVVGI A R+ E++ P + + +G GS RS+ + Sbjct: 349 KELLKQDLKNVIVIGKEGWHSGVVGIAAGRLTEKYKLPSVILS-VNNGKAVGSARSVSKV 407 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 ++ AL++ L+ KFGGH+MAAG+SL+ + ++R + V E + Sbjct: 408 NIYKALDKCRDLFD----KFGGHSMAAGMSLKTNLIPELKERLNQAVEE-VAEEKPWAVK 462 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGG 526 D + + T E + + + P+G+ P P F ++ ++L ++ Sbjct: 463 EIDMEVELSYWTTEKVKEIYNLQPFGEKNPIPKFLARNLKIEFFTNPAKNLLILNLKDEN 522 Query: 527 GPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + ++ L + + + Y +IN ++G +L ++D++ Sbjct: 523 KNIYNAKSWKAKELLDKLSVGMIIDIVYTPEINYYKGFENLDFVVDDLK 571 >UniRef50_D0EM60 Single-stranded-DNA-specific exonuclease n=3 Tax=Deinococcus RepID=D0EM60_DEIRA Length = 705 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 178/563 (31%), Positives = 277/563 (49%), Gaps = 61/563 (10%) Query: 21 ELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 ++ P + ++ R +R+ + L ++ + +A + A REG RI + GD+ Sbjct: 26 QVSPPVAQVLCGRDLRT-ELLALPLELTPNPA----LREAARHIVAAVREGKRIRIHGDY 80 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 DADG ++TA VL +R++G +N+ +P+R +GYG+ P+ V + HA A L+VTVD G+ Sbjct: 81 DADGVSATATLVLGLRAIG-ANVHGFIPHRLNEGYGIHPDRVPE-HAAAADLVVTVDCGV 138 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKS-LAGVGVAFYLM 199 S+ V+ + G V+VTDHH PG+ P +++P+L P + L G GVA++L+ Sbjct: 139 SNLDEVKSLLATGTEVVVTDHHAPGENFPECL-VVHPHLTPDYDPDRHNLTGAGVAYHLL 197 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 A+ L P LL L LGTVADV PL NR L G++ + + Sbjct: 198 WAVYEELGR-----------PEPRALLPLATLGTVADVAPLLGENRALVRAGLAEMARTE 246 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 PG++AL+ + ++ A D+ F L PR+NAAGR+ + + LL + EA+ LA Sbjct: 247 L-PGLRALM--NEKRVRQPTARDVAFILAPRINAAGRMGEADRALELLTTPSDHEAKSLA 303 Query: 320 NELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKE 379 L+ NQ R++I+ M +AL L D L + H +WH GV+GI+AS++ E Sbjct: 304 AYLEIRNQERRKIQDDMFAQALQLA-------DPNDPALVLTHDDWHAGVMGIVASKLVE 356 Query: 380 RFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEE 439 F+RPV A KGS RS G+ L L + +FGGH AAG SL+ Sbjct: 357 TFNRPVYIVAQ-----GKGSVRSTPGISAVQGLRESRDL----LGRFGGHPGAAGFSLDP 407 Query: 440 DKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPL 499 F ++R V ++ P V D PL A +T E+ L P+G+ P PL Sbjct: 408 QNFGALRERIHGYVRQFPTP---VPAVRLDAPLPVAALTPELLSELSILEPFGEGNPRPL 464 Query: 500 FDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD-----TALWPDNGVREVQLAY 554 + L RLVG++ D + F D+ E +A Sbjct: 465 WHLRGPLTDTRLVGKQG--------------DVLQFRFGGVKGMKYSERDDAAGERDVAA 510 Query: 555 KLDINEFRGNRSLQIIIDNIWPI 577 +L +NE++G SL++ + P+ Sbjct: 511 ELALNEWKGRTSLELHAAALRPL 533 >UniRef50_A2C286 DHH family:DHHA1 domain:Single-stranded-DNA-specific exonuclease n=2 Tax=Prochlorococcus marinus RepID=A2C286_PROM1 Length = 629 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 157/579 (27%), Positives = 280/579 (48%), Gaps = 30/579 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG---MLPWQQLSGV 57 + + I + D+ ++ L L+ + RG+ E + + P + + Sbjct: 8 VNRWILPKPINEDDITNI--NLNHTLQAVLIRRGIDLNNEFDEYITPSDLPNPEEHFDEL 65 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 KA + + NA + +I + GD+DADG TST L V + LG + + +P+R ++GYGL Sbjct: 66 SKATQRIINACLKKEKIAICGDYDADGITSTVLLVELLSILG-AIVKPFIPSRQDEGYGL 124 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + +++ + +G +L++TVDNGIS+ A ++ + LGI +I+TDHH D ++I+P Sbjct: 125 NENMINNINNQGIKLVITVDNGISAFAAIKKSVDLGIDLIITDHHKIPDKKLNIFSLIHP 184 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 N P K LAGVG+A+ L + + NI +GT+AD+ Sbjct: 185 EKTPINSPYKYLAGVGIAYLLAKNICEKIDYDINNSTANI----------FFCIGTIADM 234 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 PL NR + + +I + + GIK++++ + + + D+GF + P +NA GR+ Sbjct: 235 APLKGANRKWLKECLPKINSTTNK-GIKSIMKKLSIHNVDITSDDIGFKIAPLINAVGRI 293 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 D ++ + L + L N+ +N+ RK + ++ EAL + RS Sbjct: 294 GDPNLIIDLFTNKSNDSVVKLTNDCFNMNRERKRLTSLVEQEALEIAVSEYRSDRKF--- 350 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 L + EWH G++GI+A+RI E+F+ P A A DG +GS RS L + AL D Sbjct: 351 LVLTKREWHPGIIGIVAARIAEKFNLPTALLAQANDGNFRGSIRSNNKLMVNQALAECDD 410 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 L ++ GGH+ AAG S++ + +++ ++ L + D +S ++ Sbjct: 411 L----LIAHGGHSAAAGFSIKNENIDKLREKLDQIANREFKDINLYKSITPDAFISFDQI 466 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN 536 + L GP+G M P P+F ++L + HLK+ + G ++ I +N Sbjct: 467 NYNFYRQLTLIGPFGIMNPTPIFWARKCKILDIYKLKGDHLKMTL--NDGTSTIEAIKWN 524 Query: 537 VDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 T L + +A+ ++IN ++ +LQ+ I +I Sbjct: 525 GSTEL---KKQDLIDIAFYIEINRWKKLNTLQLNILDIK 560 >UniRef50_A6G9W0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G9W0_9DELT Length = 602 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 169/583 (28%), Positives = 278/583 (47%), Gaps = 27/583 (4%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSG 56 + + + R E E D + P++ L R + + + L ++ + Q++G Sbjct: 36 LSRWTRSEREERAEALD----VHPIVVELMLGRDLEALEAQREFLSPRLRELSRPTQMAG 91 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +AVE+L +A + R+ + GD+D DG T+T + + LG + V +R E GYG Sbjct: 92 YAEAVELLVDAQQRKLRVGMFGDYDVDGVTTTTILTTFLECLGVEIVA-KVASR-EGGYG 149 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + +++T D G S H + + GIP +V DHH +T+P A A++N Sbjct: 150 FGVDAAKALQESRVDMVLTGDCGTSDHEALAWLEAKGIPSVVIDHHQVPETMPPATALLN 209 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P+ C FP K L GV FYL +R+ L + ++P+ LDLVALGTV D Sbjct: 210 PHQDGCGFPFKGLCSAGVGFYLAAGVRSKLAAKS--PGSRKSLPDPRAWLDLVALGTVCD 267 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQK-LAASDLGFALGPRLNAAG 295 ++PL +NRIL G+ + + RPG++ LL+ A D + + LGF LGPRLNA G Sbjct: 268 MMPLVGDNRILVRHGLEVM-DQRRRPGVRELLKRARVDPRTHIDEGHLGFGLGPRLNAPG 326 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RL + LL + EA L ++ N+ R++++Q + EA+ L S Sbjct: 327 RLGSAEPSLDLLRARSSAEAEALGARVEMFNERRRDMQQRIVAEAMALLAADPASPRR-- 384 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALER 414 G+ + W G+VGI A+ I ER+ RP + G G +GS R+ G+ +R AL Sbjct: 385 RGIVVAREAWAPGIVGIAAAGIVERYQRPTLVIGIDPGSGEARGSARTAGGVDVRAALAE 444 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS-DGPLS 473 L + +FGGH AAG+S+ D ++ F E + + + DG L+ Sbjct: 445 CRHL----LRRFGGHKAAAGVSMPADNIDALKEAFDAACAEQMGEEADREPIDFHDGELA 500 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 ++ + + + GP+G F P + +++ +++ HL + ++ G D Sbjct: 501 LDDIDLRLISHIESLGPFGVGFARPRYLCAGAEVVRIKVLKGSHLALTLKQ--GKAHRDA 558 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 IAF P V L Y + N +RG+ Q+I++ +W Sbjct: 559 IAFRKGN--LPIAKGDRVGLLYTPERNSYRGHDRAQLIVERLW 599 >UniRef50_UPI00016B257B single-stranded-DNA-specific exonuclease RecJ n=5 Tax=candidate division TM7 RepID=UPI00016B257B Length = 548 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 176/569 (30%), Positives = 286/569 (50%), Gaps = 40/569 (7%) Query: 25 LLRRLYASRGVRSAQELERSVKGMLP-----WQQLSGVEKAVEILYNAFREGTRIIVVGD 79 L ++ ASR + +L + L ++KAV+ + A+ +G +I++ GD Sbjct: 3 LFEKILASRNI-DKDKLNSFLSPDYDLEKGDPYLLPDMQKAVDRIKTAYEKGEKIVIYGD 61 Query: 80 FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139 +D DG ++TAL + A S G +I +PNRF +GYG++ VD+ + A LI+TVD G Sbjct: 62 YDVDGISATALLLDAFESFGFKDIQSFIPNRFVEGYGMTIGAVDKIKSMDANLIITVDCG 121 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199 H + +A SLGI +VTDHH +T P A A +NP +P LAGVGVAF L+ Sbjct: 122 SLCHNEINYANSLGIDTVVTDHHNVAETPPPAVAAVNPRFGGHLYPFSDLAGVGVAFKLV 181 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 AL+ L + LLDLVALGTV D+V L NR + G+ ++ + Sbjct: 182 QALQKEL--------DGLPEGYEKWLLDLVALGTVCDIVKLTGENRANVYWGIEVMKKQR 233 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 R G+KAL+ VAN D ++A LGF GPR+NAAGR++ S+ + +L+ N +A A Sbjct: 234 -RTGLKALMAVANIDKADISAKTLGFVFGPRINAAGRMETASLALDMLISKNGDDALNKA 292 Query: 320 NELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKE 379 N +D LN R++++ + EA + L+ D + L + W+ G++GI+A++I E Sbjct: 293 NYIDNLNSHRRQMQDDIFKEACKIA--LDYKDDDV---LVINGKNWNHGIIGIVAAKILE 347 Query: 380 RFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEE 439 +F +PV A +G KGS RS DA+ D + A AAG++L+ Sbjct: 348 KFKKPVYILAENDNGETKGSARSFGDFSAADAVRAADDIIIKGGGH----AAAAGVTLKN 403 Query: 440 DKFKLFQQRFGEL-----VTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 DK F+QR E + L + +V D +E+ ++ + P+G Sbjct: 404 DKISDFRQRVNEFYNSLQLNNQERYLLPKADVEID---DFSEINEDLVGKIATMEPFGNG 460 Query: 495 FPEPLFDGH-FRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQ 551 PEP+ ++ + +G +H+K+ G ++ +AFN G Sbjct: 461 NPEPVIKITAADIVNVQHMGTDGQHIKLSARDSD-GVVIRMLAFNAPENFLCKPG-DTAS 518 Query: 552 LAYKLDINEFRGNRSLQ---IIIDNIWPI 577 + ++ IN+++G RS++ + + + P+ Sbjct: 519 IWFRPVINKWQGIRSVEGELLHLQLVHPV 547 >UniRef50_Q253D9 Mg-dependent 5'-3' ssDNA-specific exonuclease n=16 Tax=Chlamydiaceae RepID=Q253D9_CHLFF Length = 589 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 153/558 (27%), Positives = 262/558 (46%), Gaps = 23/558 (4%) Query: 8 RRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVEKAVEI 63 + + L P+ +++ SRG ++ E+ + + + L + KA+E Sbjct: 19 QNPILLSVIIKELHLHPIAAQIFVSRGFQTVDEVRDFLYVHLSNLHDPELLLDMSKAIER 78 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 L A I+V GD D DG + AL V ++S+ + Y G ++ Sbjct: 79 LLLAKERNEHIMVYGDSDVDGISGVALLVEFLKSIDV-RVSYCFLGALLKHSGEPSSLIA 137 Query: 124 QAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 + G L++TVD GI++ V GI VI+TDHH+P +P A +NP L+D Sbjct: 138 KMKEEGISLLITVDCGITAGKEVSDINKQGIDVIITDHHMPTGKIPHCIATLNPKLKDRA 197 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 +P+K L GVGVAF L + L + + +L LLDLV LGTV DV L Sbjct: 198 YPNKELTGVGVAFKLARGVLNALEKKNPSIKV-----DLKRLLDLVTLGTVTDVGTLLGE 252 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NR + G+ I G R G+ L + ++ ++D+ + P+LN+ GRL D S G Sbjct: 253 NRTMVRHGIKEISKG-SRLGLHKLCVFSGVKPSEVTSTDIVLKIAPKLNSLGRLADASKG 311 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 V LLL ++ A + LD +N+ R++IE + + + + + + Sbjct: 312 VELLLTEDPEVANDIIQYLDKINKERQKIEADVFHDVQKILKS--NPSIVKQAAIVLSSK 369 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMM 423 EWH V+ I+++R+ + +++PV + G G KGS R+I + L++ +L+ Sbjct: 370 EWHSRVIPIISARLAKAYNKPVAIISNQG-GVGKGSLRTIGSFPLLGILQKCSSLF---- 424 Query: 424 LKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483 + +GGH AAG+ + ED+ + F+++F LV L + D E+ ++ Sbjct: 425 VSYGGHDFAAGIIINEDQIEPFRKKFIHLVNSSLKKDKAVITLSLDARAEFDEIDHDLLS 484 Query: 484 LLRDAGPWGQMFPEPLFDGHFRLLQ-QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALW 542 + P+G+ P P+F R ++ +L+ HLK+ + G L+GIAF + + Sbjct: 485 SIDLFEPFGKGNPVPIFYTVVRQVRYPKLLPGNHLKLYINH--GERNLEGIAFGLGDRID 542 Query: 543 PD--NGVREVQLAYKLDI 558 N + ++LAY + Sbjct: 543 ALKANWNKPLELAYTPRL 560 >UniRef50_A1U815 Phosphoesterase, RecJ domain protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U815_MARAV Length = 660 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 224/644 (34%), Positives = 317/644 (49%), Gaps = 84/644 (13%) Query: 8 RRREVDETADLPAELPPLLRR----LYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEI 63 + RE+ T PA P +R+ ++A+RG + K ++ L+ KA Sbjct: 17 QSREIVTTG--PAVENPAVRQLKEHIFANRGASYPETYHP--KHLVSPTLLTDALKAAVR 72 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRS---------LGCSNIDYLVPNRFEDG 114 L +A EG II V DFD DGAT A+ M+ + +++ ++P+RF G Sbjct: 73 LSDALLEGQTIICVADFDCDGATGAAIFNRCMKRFADTLAAFRMPKASLHTVIPDRFRYG 132 Query: 115 YGLSPEVVD-QAHARGAQLIVTVDNGISSHAGVEH---------ARSLGI-PVIVTDHHL 163 YGL P + + + +IVT+DNGISSH V A G VI+TDHH Sbjct: 133 YGLKPRLAEDKIKPLYPDVIVTIDNGISSHDAVTRISQWQGVSSANPNGAPDVIITDHHA 192 Query: 164 PGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDER------NI 217 G+TLP A A++NPN +DC FPSK+LAG GVAFY+ML +R L + + R I Sbjct: 193 QGETLPTAFAVVNPNRKDCPFPSKALAGCGVAFYMMLLVRQTLISRLKRNSRTSAAAGGI 252 Query: 218 AIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRP------------GIK 265 A + DLVA+GT+ D+VP+D NNRI+ G+ RI G P G++ Sbjct: 253 AAVQINHFADLVAVGTIGDMVPMDLNNRIMVKVGLDRINKGLQMPARKAHLDGYLSFGVR 312 Query: 266 ALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDAL 325 ALLE AN + ASD+ F + PR+NA GRL+ + G+ LL + A + A+ L Sbjct: 313 ALLEAANVSY-PVTASDIAFQVVPRINAVGRLETPTAGIECLLSETQMMAGIEADRCHKL 371 Query: 326 NQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPV 385 N+ RK +++ MQ EA L + DT + +++P WH G+VG++AS IKER V Sbjct: 372 NEERKSVQRTMQQEADEALASLSDTPDTETPCVVLHNPSWHPGIVGLVASGIKERTKGAV 431 Query: 386 IAFAPAGD--------------GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 I FAP GD LKGSGRS +H+RD L + P +M++FGGHA Sbjct: 432 ICFAPEGDPNAKPGTPEADGDPDWLKGSGRS-DNVHLRDTLAFVAAQAPDLMMQFGGHAR 490 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 AAGLSL + + F++ F + V L + L V +DG L A + PW Sbjct: 491 AAGLSLHKTELNRFKRLFAKAVEHSLTAAPLVNPVYADGALPAHLRDHAFAAWIER-QPW 549 Query: 492 GQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPL----------------LDGI-- 533 G +FPEP F +F++++ VG H K++V PL I Sbjct: 550 GNLFPEPTFTQNFKVIRAAGVGTAHQKLLVMDADEQPLSNTDQNGTTIYPVSHGAKAIPM 609 Query: 534 -AFNVDTALWPDN--GVREVQLAYKLDINEFRGNRSLQIIIDNI 574 F PD V++ Y L IN FRG +Q I +I Sbjct: 610 LWFFSRDEENPDTVAPGSAVRVTYTLTINRFRGQNEIQAIAKSI 653 >UniRef50_B9L1D5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1D5_THERP Length = 561 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 169/587 (28%), Positives = 262/587 (44%), Gaps = 46/587 (7%) Query: 6 QLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEK 59 + R RE + ++ EL PLL + RG+R+ +E+ R ++ + L + Sbjct: 3 RYRWREPERVPEMARELAVHPLLAAVLYRRGIRNHEEVRRFLQPHLSDLPDPAALPDSGR 62 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 AV ++ ++V GD+D DG T+T L G + + +VP+R DGYG Sbjct: 63 AVSLVEEVRCRSRPVVVFGDYDVDGLTATTLLAQLFGEFGLT-VIPMVPHRLRDGYGFQR 121 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT-LPAAEAIINPN 178 V L+VTVD G + G+PVIV DHH D P A ++ Sbjct: 122 HHVPGVLEHRPALLVTVDCGTGDWDALRDVLRAGVPVIVLDHHAVHDEAWPDELAFVSVA 181 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 D ++L+ VGVA+ L + + L LVALGTVADVV Sbjct: 182 RPDAPPVFRTLSAVGVAYQFARLL--------------LGNEAASRWLPLVALGTVADVV 227 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRD---AQKLAASDLGFALGPRLNAAG 295 PL NR L G+ R G++ L ++ D Q+L + G+ LGPRLNAAG Sbjct: 228 PLVGINRTLVALGLKRFWET-APLGLRTLARLSGLDSARGQRLTSWHCGYVLGPRLNAAG 286 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+DD + + LLL + A LA +L+ LN R+ + M EA + L +LP Sbjct: 287 RMDDPRLALELLLTADAQRAEELARKLNELNALRQRAIERMLAEAEQRIDAL----GSLP 342 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 L + W G+VG+ AS++ R+ RPV+ A + +GS RSI G + AL R Sbjct: 343 PVLVLADSAWSVGLVGLAASKLVSRYARPVVLLARESE-VSRGSARSIDGFDIAAALARC 401 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L ++ GGH AAGL++E ++ + R E+ E L + D L P Sbjct: 402 RDL----LIDHGGHHAAAGLTVETERIAELEARLLEIAAEHLGQEEPALPLELDAELHPY 457 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLV------GERHLKVMVEPVGGGPL 529 ++ +E ++L P+G P P F + R V ERHL+ V G + Sbjct: 458 QIALETWEVLAQLEPYGHGNPVPRFL----VRDVRAVDITSTQNERHLRFTVVAPD-GTV 512 Query: 530 LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + F + + +A+ L +++ G +++ + +I P Sbjct: 513 RQAVWFEGGREIARLARAGRIDIAFTLRRSDWNGQERVELDVIDIRP 559 >UniRef50_D1C3K1 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3K1_SPHTD Length = 598 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 163/560 (29%), Positives = 255/560 (45%), Gaps = 32/560 (5%) Query: 25 LLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 LL + RG R ++ ++ + L + AV ++ + G I+V GD+ Sbjct: 58 LLGEILWRRGFRDRAAVDAFLRPRLDDLPDPHALPDLTAAVSLIRDTIAAGRPIVVYGDY 117 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 DADG TAL A+ +LG + + +VPNR DGYGL+ + A GA L + VD G Sbjct: 118 DADGLCGTALLTRALTALG-AEVRTMVPNRLTDGYGLNLNAARRIAADGAGLAILVDCGT 176 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 + ++ GIP +V DHH D A A ++P D +P LA GV + L Sbjct: 177 GDAEALRLLQAAGIPAVVLDHHHVRDPNLPAAAFVSPRRPDSQYPFAGLAAAGVTYQLAR 236 Query: 201 ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKC 260 AL R G +A DVVPL+ +NR + G+ R A Sbjct: 237 ALLGEERAAGLLPLAALATVA--------------DVVPLERDNRAIVHHGLRRF-AADA 281 Query: 261 RPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLAN 320 G++ L A DA+ L A L F L PR+N+AGR++D ++ + LLL ++ EAR LA Sbjct: 282 PLGLQVLCVDAGVDARSLTAWHLAFILAPRVNSAGRMEDPTLALRLLLTEDPAEARRLAR 341 Query: 321 ELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKER 380 L LN R++ + M +A +L D L + W G+VG++ASR+ +R Sbjct: 342 YLSRLNAQRQQATERMLAQAE---RRLALGTDDNASVLLVAEEGWSVGLVGLVASRLADR 398 Query: 381 FHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEED 440 + RP + A G+ +GS RSI G + +AL+ L ++ GGH+ AAGL++E Sbjct: 399 YQRPAVVLARDGE-LSRGSARSIDGFDIVEALDACRDL----LVAHGGHSRAAGLTVETA 453 Query: 441 KFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPL- 499 + ++R L+ L + D L E+ E A+L+ P G P P+ Sbjct: 454 HLRTLEERLSSLIGRTFPDGLPLPALQLDAELHANELVPETARLIEALEPCGTGNPTPVF 513 Query: 500 FDGHFRLLQQRLV-GERHLKVMVEPVGGG--PLLDGIAFNVDTALWPDNGVREVQLAYKL 556 F + + RL +HL V + ++FN L +R +A+ L Sbjct: 514 FIRDVSVQRPRLSRDGKHLLFDVVARDHRIVRRVGAVSFNGSERLDELAALRRADVAFTL 573 Query: 557 DINEFRGNRSLQIIIDNIWP 576 + + G+ L + + + P Sbjct: 574 RRDHWNGSERLSLEVVDFRP 593 >UniRef50_A5FY25 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Alphaproteobacteria RepID=A5FY25_ACICJ Length = 594 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 187/584 (32%), Positives = 290/584 (49%), Gaps = 28/584 (4%) Query: 7 LRRREVDETA---DLPAELPPLLRRLYASRGV---RSAQELERSVKGMLP-WQQLSGVEK 59 L R D TA +P ++ RL A RGV +A LE +++ LP L+ ++ Sbjct: 24 LWRPAADRTAQAIAQRCGVPEVIGRLLAGRGVMPDHAADFLEPTLRAYLPDPSALTDMDA 83 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 A + ++ + G I + GD+D DGA S AL L + LG + I+Y VP+R +GYG + Sbjct: 84 AAARIADSVQRGATIAIFGDYDVDGACSGALMALGLGELGATTINY-VPDRLREGYGPNA 142 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 + +GA+LIV VD G ++H + IV DHH PA A +NPN Sbjct: 143 PALRALAGQGAELIVCVDCGTAAHEALAALDGR-ADAIVLDHHKSEGAPPAIVATVNPNR 201 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 D ++ ++F ++A++ LR +G+F R +L +LDLVAL TV DV+P Sbjct: 202 ADDASGLGNVCAATISFLTLVAVQRELRRRGFFATRR--EIDLLSMLDLVALATVCDVMP 259 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 L NR L QG+ + A + RPGI ALL+VA + GFA+GPR+NAAGR+ + Sbjct: 260 LTGLNRALVTQGLKVM-ARRERPGIAALLDVAQVREAPGTMT-CGFAIGPRINAAGRIAE 317 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 +G+ LL A VLA LD +N+ R+ +E G+ EA+T E + + Sbjct: 318 ADLGLRTLLAAEPATAMVLARRLDEINRERQAVEAGLLDEAMTDAEAQFAAGAPVA---L 374 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 + +WH GVVGI+A RIKE F+RP + A +G GSGRS+ G+ + A+ + Sbjct: 375 VAGEQWHPGVVGIVAGRIKETFNRPALV-AGIAEGRAVGSGRSVPGVDLGSAI--IAARE 431 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 G+++K GGHAMAAG ++E + + + E + ++ +G + + Sbjct: 432 AGLLIKGGGHAMAAGFTVEAGRIEALRGFLAERLAVAATLPDA-ADLPIEGMAAVGGIDE 490 Query: 480 EVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGER--HLKVMVEPVGGGPLLDGIAFN 536 +A + GP+G EP+F R+L+ +G ++ VE GG L I F Sbjct: 491 ALAAAIGRVGPFGAGNEEPVFVVPRARVLRADRIGRNEATIRAFVEGEAGGR-LKTILFR 549 Query: 537 VDT----ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 A G + LA + ++ G S+ +I+ + P Sbjct: 550 AGDGDLAAALARPGGAPLNLAGHIRAEQWNGRTSVSLILIDAAP 593 >UniRef50_B2J6M4 Single-stranded-DNA-specific exonuclease RecJ n=19 Tax=Cyanobacteria RepID=B2J6M4_NOSP7 Length = 816 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 160/617 (25%), Positives = 279/617 (45%), Gaps = 69/617 (11%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK-----GMLPWQQLS 55 ++ IQ ++ ++ + A +L RG++ Q+L + P++ Sbjct: 16 LEWFIQAVKQHTPLSSGIYA------AQLLWQRGIKDNQQLTAFINYKDYQPASPFEFGQ 69 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN--IDYLVPNRFED 113 ++ A+ L A+ +I + GDFDADG T+T++ + N + Y +PNR ++ Sbjct: 70 EMQLAIARLQQAYNAKEKIAIWGDFDADGITATSVLWDGLGQFFKQNTQLIYYIPNRLKE 129 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 +GL+ + +D +G +LIVT D G ++ + +A+ LGI VIVTDHH P A Sbjct: 130 SHGLNNQGIDNLAKQGCKLIVTCDTGSTNIEEIIYAKQLGIDVIVTDHHTLPTERPPVAA 189 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 IINP +L+GV VA+ L+ AL L N+A L +LLDLVA+G Sbjct: 190 IINPRYFSREHQLFNLSGVAVAYKLVEALYQSL--------PNVAKHPLEDLLDLVAVGL 241 Query: 234 VADVVPLDANNRILTWQGMSRIRA-------GKCRPGIKALLEVANRDAQKLAASDLGFA 286 +AD+V L + R L G+ R++ + RPG+ LLE+ + + +D+ F Sbjct: 242 IADLVQLSGDCRYLAQLGIQRLQEDFKQPPTARRRPGVGRLLELCQKSGDR--PTDISFG 299 Query: 287 LGPRLNAAGRL-DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCE 345 LGPR+NA R+ D S V LL ++ LA + N RK +++ +Q + + + Sbjct: 300 LGPRINAVSRIQGDASFCVELLTSRDVKRCNELAEVTELANTRRKSLQKDVQAQ---VAQ 356 Query: 346 KLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT---------- 395 KL + + + + +W GV+G++A ++ + RP I + G Sbjct: 357 KLTQLDLSTTSVIVLEDAQWPAGVLGLVAGQVAQETGRPTILLSTELAGEEDFALTPYSL 416 Query: 396 -----LKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFG 450 +GS RS+ + + ++ L + +FGGH AAGLSL + LF Sbjct: 417 LPAPLARGSARSVNSVDLYQLVKDQAHL----LHRFGGHPFAAGLSLLVENIPLFTAAIN 472 Query: 451 ELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPL-------FDGH 503 + + + L + L V +D ++ A++ E+ L+ P G P P F+ Sbjct: 473 QQLRQSLGSTTLTPTVQADLTVTVADLGKELFLELKVLEPCGMGNPVPKLLIQNCWFENA 532 Query: 504 FRLLQQRLVGER--HLK--VMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDIN 559 + QQ G++ ++K + G G+ + P + +LD N Sbjct: 533 WHRNQQDWQGKKVQYIKTEFDIRDDSGRSAFPGLWWGHYKDELP---IGRCDCIAELDYN 589 Query: 560 EFRGNRSLQIIIDNIWP 576 F+ + +I + + P Sbjct: 590 TFK--KRYEIRLIAVRP 604 >UniRef50_Q7VBV8 Single-stranded DNA-specific exonuclease n=1 Tax=Prochlorococcus marinus RepID=Q7VBV8_PROMA Length = 626 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 149/581 (25%), Positives = 288/581 (49%), Gaps = 33/581 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPW---QQLSGVE 58 ++ + +D + L +++ + RG +S +++ ++ P + Sbjct: 3 NLTWEI-PKHIDFHSIEYDYLGTIIKEILYRRGFQSKSDIQNFIEPSKPPNALFHFPFLN 61 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 A E + +A + I + GD+DADG TSTAL + + L I L+P+R +DGYGL+ Sbjct: 62 IASERVISAIKNHEEIAICGDYDADGMTSTALLIDVLTKLNAKPIP-LIPSRQDDGYGLN 120 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 ++D+ A L++TVDNG+S+ +++A+SLGI VIVTDHH L A A+I+P Sbjct: 121 KAIIDKIVALNINLLITVDNGVSAIEELKYAKSLGIDVIVTDHHKINHQLNDAFALIHPE 180 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 P +S+AGVGV + L + L + + DL+ +GT+AD+ Sbjct: 181 TTPEKSPYRSIAGVGVTYILAEDIAKKLNKEEILNLSK----------DLLCIGTIADMS 230 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 L+ NR + +++ G++A+ + + + ++ +D+ F + PR+N+ GR+D Sbjct: 231 KLEGANRYWLKHWIYKLKDSTS-LGLQAIYKNSKLNNLQIKTNDISFKIAPRINSIGRID 289 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 D + + LL+ + + +AN + +N+ RK++ ++ EAL + EK + D+ + Sbjct: 290 DPKLILDLLIEKDQSKVDHMANRCEEINRLRKKLCLIVEKEALNILEKKDAQIDSF---I 346 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + W+ GV+GI+ASRI ++ RP + G+G L+ S RS + H+ +AL + L Sbjct: 347 LLAQGHWNHGVIGIVASRIMNKYLRPTAILSSEGEGLLRASVRSPKNFHVTEALGKCSDL 406 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 + K+GGHA AAG +++ +++ + WL + ++ + + +++ Sbjct: 407 ----LEKYGGHAAAAGFTVKASNLMALEKKLNSIAETWLSQNE-VAKISPEARIDFSQIN 461 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRL--VGERHLKVMVEPVGGGPLLDGIAF 535 E+ L+ P+G +PLF + + + R+ GE L++ ++ D I + Sbjct: 462 DELLGDLKKLEPFGIGNQKPLFWTNSCEVTKYRIGYFGE--LRISLKNAD--ISFDAIKW 517 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 N + + +A+ +DI+ + + + I + P Sbjct: 518 EFSKK--DINLPKTINIAFNIDISTKQDKDIVCLNIVDFVP 556 >UniRef50_UPI0001C38E3E exonuclease RecJ n=1 Tax=Arthrospira platensis str. Paraca RepID=UPI0001C38E3E Length = 789 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 158/564 (28%), Positives = 268/564 (47%), Gaps = 50/564 (8%) Query: 26 LRRLYASRGVRSAQELERSVK-----GMLPWQQLSGVEKAVEILYNAFR------EGTRI 74 L +L RG+ + ++L R ++ P + + +++A+ L A++ +I Sbjct: 30 LCQLLLCRGISTREQLTRFLEIDSYQPASPAEFGAEMQEAIARLTLAYQKCISHNNPEKI 89 Query: 75 IVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV 134 ++ GDFDADG T+TA+ +R S++ Y +PNR D +GL+ ++ A+G LI+ Sbjct: 90 VIWGDFDADGITATAVLWEGLRQFFGSSVSYTIPNRLTDSHGLNQRTIETLAAQGCSLII 149 Query: 135 TVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGV 194 T D G ++ A ++ A+ LGI VI+TDHH T P AIINP + P L+GV + Sbjct: 150 TCDTGSTNLAELQLAQDLGIDVIITDHHTLPPTRPPVLAIINPRNLPTDHPLYHLSGVAI 209 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 A+ L+ AL L ++ L LLDLVA+G +AD+V L + R L +G+ + Sbjct: 210 AYKLIEALYMAL--------PGVSQQPLENLLDLVAIGLIADLVELSGDCRYLAKRGIQQ 261 Query: 255 IRA---GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL-DDMSVGVALLLCD 310 ++ RPG+ LL++ ++ + +D+ F +GPR+NA R+ D+S V LL Sbjct: 262 LQKQLDQPTRPGVAELLKLCQKNGDR--PTDISFGIGPRINAVSRIYGDVSCVVELLTTP 319 Query: 311 NIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVV 370 + A+ LA + N R+E+++ + A + EKL+R + + + P+W GV+ Sbjct: 320 DPQRAKQLAINTEIANLRRRELQKNL---AYEVREKLQRIDLSTTYAIVLSDPQWSVGVL 376 Query: 371 GILASRIKERFHRPVIAFAPAG---DGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 G++A +I + + RP I G G +GS RSI + + D + L + FG Sbjct: 377 GLVAGQIAQEYSRPTILLTTEGGTETGLARGSARSINQIDLYDLVYNQRHL----LHNFG 432 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLL-QGEVVSDGPLSPAEMTMEVAQLLR 486 GH AAGLSL + +F Q + + + LL Q ++ D + AE+ + + L+ Sbjct: 433 GHPFAAGLSLPIENIPIFTQAIDRELRQRMGGILLSQSPIIVDLVCTVAELGSHLFKELK 492 Query: 487 DAGPWGQMFPEPL-------FDG--HFRLLQQRLVGERHLKVMVEPVGGGPL--LDGIAF 535 P G P P FD + R ++++ + G+ + Sbjct: 493 LLEPCGMGNPVPKLLIKNCWFDNVWNENPYDLRGKKVQYIRTTYDLFDDSTELGFPGVWW 552 Query: 536 NVDTALWPDNGVREVQLAYKLDIN 559 P +LD N Sbjct: 553 GHYKEELP---PGRYDAIVELDFN 573 >UniRef50_A3VNM8 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Alphaproteobacteria RepID=A3VNM8_9PROT Length = 610 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 186/574 (32%), Positives = 282/574 (49%), Gaps = 24/574 (4%) Query: 14 ETADLPAELPPLLRRLYASRGVR---SAQELERSVKGMLP-WQQLSGVEKAVEILYNAFR 69 ET ++ PLL + A+R V +A L ++ LP L G++ A L +A Sbjct: 40 ETIAQRLDIDPLLSEVVAARQVTPDLAAAWLSPRLRDDLPDPSCLKGMDTAAARLADAII 99 Query: 70 EGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARG 129 G I + GDFD DG TS+A+ +R++G + + +PNR +GYG + +G Sbjct: 100 AGETIGLFGDFDVDGTTSSAIMARYLRAVGAAPL-IHLPNRQSEGYGPNLPAFLAMKEKG 158 Query: 130 AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSL 189 A LIVT+D G ++H + A G+ VIV DHHL P A A++NPN DC L Sbjct: 159 ASLIVTLDCGATAHGVLAAAAEEGLEVIVVDHHLMSLPAPTAVAVVNPNRPDCLSGLTML 218 Query: 190 AGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTW 249 + GV F ++AL LR++G+F +R LDLVAL V DV+PL R LT Sbjct: 219 SAGGVTFLTLVALNRTLRERGFFADRPPPDLLRL--LDLVALSLVCDVMPLKGLGRTLTR 276 Query: 250 QGMSRI----RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVA 305 QG++ + AG GI+AL A AA+ G+A+GPR+NAAGR+ Sbjct: 277 QGLALLGHIEGAGSGNQGIRALAAEA-GAKGPAAAAHFGYAIGPRINAAGRIGHAMTAFD 335 Query: 306 LLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEW 365 LL D+ +A LA EL LN R+ +E + EA E ++ P L + W Sbjct: 336 LLTTDDPVKAAALAAELSDLNGIRQGVEAAVLEEACKAAE--DQGDRDAPLPLVVAGEGW 393 Query: 366 HQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLK 425 H GV+GI+A R+KERF RP + + AG+ KGSGRS+ G+ + A+ + Sbjct: 394 HPGVIGIVAGRLKERFGRPALVISLAGE-EGKGSGRSLPGVDLGAAIGAAVEAGLLLGGG 452 Query: 426 FGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLL 485 H MAAGL++ D + + E + + + DG ++P +T + L Sbjct: 453 G--HPMAAGLTVRRDGLGELRAFLDARLGEAIAAAQADRVLSLDGIVAPTGITRSLHDGL 510 Query: 486 RDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN-----VDT 539 A P+G PEP F + + R++ ++H+ V + GG GIAF + Sbjct: 511 LQAAPFGNGNPEPRFALADISVRELRVLKDKHMAVTLADDTGGRA-RGIAFGCVGQPLGD 569 Query: 540 ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 L + + LA ++ +E+RG + QI +++ Sbjct: 570 LLEAGRAGQRLHLAGRIKPDEYRGGNAAQIHLED 603 >UniRef50_D1AL25 Single-stranded-DNA-specific exonuclease RecJ n=4 Tax=Fusobacteriaceae RepID=D1AL25_SEBTE Length = 560 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 150/582 (25%), Positives = 277/582 (47%), Gaps = 31/582 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSG 56 M+ ++ E ++ L+ L +RG+ + +++++ + + Sbjct: 1 MRWELLNYNDEYIQSKSKEFHTDKLITELLLNRGITNKEDVDKFLNPSMENINDPFLFED 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +E+ VE + A + +I + GD+D DG + TA ++ +R+LG NIDY + NR +G Sbjct: 61 MERIVERIIIARKNKEKIFIYGDYDVDGISGTAYLIIVLRNLGI-NIDYFIQNRVHEGSK 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 ++ V+ R A+L++TVD S +E GI +I+TDHH + L IN Sbjct: 120 INKHFVNYIKKRNAKLVITVDTSFGSTEEIELLTKNGIDLIITDHHRQTNKLKLDVKTIN 179 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P + +P K L+G G+A+ L A+ L ++ L + +D+V +GTVAD Sbjct: 180 PKISK-TYPFKHLSGSGMAYKLADAVYERL---------GVSKKILHDYMDIVMIGTVAD 229 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 VVP+ NR + QG++ +R K + G++ L+ +A + SD+GF + P LNA GR Sbjct: 230 VVPMTDENRFIIKQGLANLRKTKVK-GLEYLIVYLKLNAYSINTSDIGFYIAPMLNALGR 288 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 +D + V + + + E+ N+ R+ +E + E K+ P Sbjct: 289 IDSSKMVVDFYIEKDDFRIFNIIEEMKRANKIRRYLEINIYNEIEEKIAKMREK----PK 344 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 + M +WH GV G+++SR+ +++ PVI + +G K S RS++GL++ D L+ + Sbjct: 345 YIFMKSKKWHSGVTGVVSSRLSLKYNIPVIIISI-KNGYGKASCRSVEGLNIFDILKEIS 403 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 + +FGGH +AAG + E ++ + L+ S ++ + + D LS Sbjct: 404 HKFE----RFGGHDLAAGFLVTEKVLFQIEKYLKNKL-YRLNKSDIEKKFLIDSYLSIEN 458 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGI 533 + + + + P+G EP F D + LL G RH K MV V G L I Sbjct: 459 INKTLVKEINKLSPFGLDNQEPNFTDNNVTLLNYTKFGVDSRHFKGMV--VKGNKKLPVI 516 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 +N+ + N +++++ Y + + + +++ + + Sbjct: 517 GYNLGDKIDTKNSGKKIEILYTPVLKYGKNDFFIELKLKDFK 558 >UniRef50_B5W1F3 Single-stranded-DNA-specific exonuclease RecJ (Fragment) n=1 Tax=Arthrospira maxima CS-328 RepID=B5W1F3_SPIMA Length = 737 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 153/581 (26%), Positives = 275/581 (47%), Gaps = 52/581 (8%) Query: 26 LRRLYASRGVRSAQELERSVK-----GMLPWQQLSGVEKAVEILYNAFREG------TRI 74 L +L SRG+ + ++L R ++ P + + +++A+ L A++ +I Sbjct: 30 LSQLLLSRGISTPEKLTRFLEIDSYQPASPAEFGAEMQQAIARLTLAYQRCISHNNPEKI 89 Query: 75 IVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV 134 ++ GDFD DG T+TA+ +R S++ Y +PNR D +GL+ ++ A+G LI+ Sbjct: 90 VIWGDFDPDGITATAVLWEGLRQFFGSSVSYTIPNRLTDSHGLNQPGIETLAAQGCSLII 149 Query: 135 TVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGV 194 T D G ++ A ++ A++LGI VI+TDHH T P AIINP + P L+GV + Sbjct: 150 TCDTGSTNLAELQLAQNLGIDVIITDHHTLPPTRPPVVAIINPRNLPSDHPLYHLSGVAI 209 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 A+ L+ AL L ++ L LLDLVA+G +AD+V + + R L +G+ + Sbjct: 210 AYKLVEALYMAL--------PGVSQQPLENLLDLVAIGLIADLVEITGDCRYLAKRGIQQ 261 Query: 255 I---RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL-DDMSVGVALLLCD 310 + + RPG+ LL++ + + +D+ F +GPR+NA R+ D+S V LL Sbjct: 262 LQKQQKNPTRPGVSQLLKLCKNNGDR--PTDISFGIGPRINAVSRIYGDVSCVVELLTTR 319 Query: 311 NIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVV 370 + +A LA + N R+E+++ + A + +KL++ + + + P+W+ G++ Sbjct: 320 DTQQAYKLAWNTEIANSRRRELQKNL---AYDVRKKLQKIDLSTTYAIVLSDPQWYVGLL 376 Query: 371 GILASRIKERFHRPVIAFAPAG---DGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 G++A +I + + RP I G G +GS SI + + D + L + FG Sbjct: 377 GLVAGQIAQEYRRPTILLTTEGGTETGLARGSASSIHPIDLYDLVYSQRHL----LHSFG 432 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLL-QGEVVSDGPLSPAEMTMEVAQLLR 486 GH AA LSL + +F+Q + + + + LL Q ++ D + AE+ + Q L+ Sbjct: 433 GHPFAASLSLPIENIPIFKQVIDQQLRQRMGGILLPQSPIIVDLVCTVAELGYNLFQELK 492 Query: 487 DAGPWGQMFPEP-----------LFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 P G P P +++ + L+++ V + G+ + Sbjct: 493 LLEPCGIGNPVPKLLIKNCWFENVWNKNIVDLRRKQVKYIKTTYQLFDDSTESGFPGVWW 552 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 P +LD N ++ + + P Sbjct: 553 GHYKEELP---PGRYDAIVELDFNT--NRSKCEVRLLAVCP 588 >UniRef50_C3WCG5 Single-stranded-DNA-specific exonuclease recJ n=16 Tax=Fusobacterium RepID=C3WCG5_FUSMR Length = 573 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 141/553 (25%), Positives = 272/553 (49%), Gaps = 32/553 (5%) Query: 32 SRGVRSAQELERSVKGML----PWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATS 87 +RG + + + + + + V+ + + +I + GD+D DG T+ Sbjct: 33 NRGFSDEKSVNEFINPEISDFRNPFKFEKMASVVDKILAKKEKNEKIFIYGDYDVDGITA 92 Query: 88 TALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVE 147 V +G ++DY +PNR E+GYGL + +D R +L++TVD G++S V+ Sbjct: 93 AVFLVKVFSEIGI-DVDYYIPNRMEEGYGLDKKAIDFMKKRNCKLVITVDTGVNSIEDVK 151 Query: 148 HARSLGIPVIVTDHHL-PGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFL 206 +A SLGI VIVTDHH D ++NP L D + K L+G GVA + Sbjct: 152 YAESLGIEVIVTDHHKSTKDKEDEELLLLNPKLSD-TYEFKYLSGAGVALKVA------- 203 Query: 207 RDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKA 266 QG +++ N + L + +D+V +GTVADVVP+ NRI+ +G+ + K + G+ Sbjct: 204 --QGVYEKLNADMGKLYQYMDIVMIGTVADVVPMVDENRIIIKEGLKILSKTKVK-GLMY 260 Query: 267 LLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALN 326 LL+ +++ +D+ + + P +N+ GR+ +G L ++ E + E+ N Sbjct: 261 LLKYLKFQNKEINTTDVSYFISPLINSLGRIGVSKMGADFFLKNDEFEIYNIIEEMKKSN 320 Query: 327 QTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVI 386 + R+E+E+ + EA +K+++ +Y +WH GV+G+++SR+ +++ P I Sbjct: 321 KKRRELEKAIYEEADHKIKKMDKKSLKCA---FLYSKKWHPGVIGVVSSRLSVKYNMP-I 376 Query: 387 AFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQ 446 A D K S RS++G+ + + + +++FGGH +A+G ++++ K + Sbjct: 377 ALVALRDNIGKASCRSVKGVSVFNIFHTMKD----KLVRFGGHDLASGFIVKQENLKEVE 432 Query: 447 QRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF---DGH 503 + F E + E + + + D L ++ + + + P+G PLF D Sbjct: 433 RIFKENIDE-IKVEQEEKILKIDMELPIEKIDENLFKAMESLAPFGLDNNHPLFIDKDLS 491 Query: 504 FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL-WPDNGVREVQLAYKLDINEFR 562 F +++ V ERH +++ G + +AF++ + + +++ + Y + ++ Sbjct: 492 FDYIKKFGVNERHFNGIIKKNGKNYHM--VAFDMGHKINELEAKIQKFDIVYYPEKVIYK 549 Query: 563 GNRSLQIIIDNIW 575 G +QI I +I Sbjct: 550 GEEIIQIRIKDIK 562 >UniRef50_B1XPL2 Single-strand-DNA-specific exonuclease n=3 Tax=Chroococcales RepID=B1XPL2_SYNP2 Length = 761 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 156/560 (27%), Positives = 249/560 (44%), Gaps = 44/560 (7%) Query: 26 LRRLYASRGVRSAQELERSVKG-----MLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 L +L RG L + + +++A+ L A G ++ + GDF Sbjct: 31 LAQLLWQRGFNDENTLAGFLNPEAYAPTSAFAFGQEMKRAIHRLIQAKERGEKVAIWGDF 90 Query: 81 DADGATSTALSVLAMRSL--GCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 DADG T+T++ + + + Y +PNR + +GL+ +D+ GA LI+ D Sbjct: 91 DADGVTATSVLWEGLGQFFSQETQLIYYIPNRLTESHGLNNPGIDRLKTWGASLIIICDT 150 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 G ++ + HA+SL I +I+TDHH +T P +IINP N P L+GV VA+ L Sbjct: 151 GSTNLTEIAHAKSLDIDLIITDHHTLPETRPDVLSIINPRYFAENHPLFHLSGVAVAYKL 210 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 + AL L D P + +LLDLVA+G +AD+V L + R L G+ ++ Sbjct: 211 VEALSETLPD--------PTRPPVTDLLDLVAIGLIADLVALKGDCRYLAQVGIQALQKQ 262 Query: 259 KC-----RPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL-DDMSVGVALLLCDNI 312 PGIKALL+ ++ + +D+ F +GPR+NA R+ D S V LL Sbjct: 263 TNPKTVVHPGIKALLDNCHKTGDR--PTDISFGIGPRINAVSRIYGDASFCVELLTSRER 320 Query: 313 GEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGI 372 G LA + + N RKEI+Q + +A E L+ S L + +W GV+G+ Sbjct: 321 GRCGYLAQQTELANARRKEIQQKVVQQAKAQIETLDLS---TTSVLVLCDAQWQGGVLGL 377 Query: 373 LASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 +AS+I + F RP I + KGS RS G+ + D ++ L + +FGGH Sbjct: 378 VASQIAQTFGRPTILLTYDPEQDLWKGSARSAHGIDLYDLVQAQGHL----LHRFGGHPF 433 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWL--DPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAG 489 AAGLS+ + +F+ + + QGE+ D ++ A++ + Q L Sbjct: 434 AAGLSVRPENLAMFKTAINQQARQQWGSSIETHQGEITIDLVVAIADLGESLFQSLECLE 493 Query: 490 PWGQMFPEPLFDGHFRLLQQRLVGE---------RHLKVMVEPVGGGPLLDGIAFNVDTA 540 P+G P+P L + + K E + GI + Sbjct: 494 PFGMGNPKPKLLIKDCGLTVTGFSKLRDKFNRKLNYFKTNFELWDETDQISGIWWGGHP- 552 Query: 541 LWPDNGVREVQLAYKLDINE 560 + + +LD E Sbjct: 553 -DDLTQGAGLDVVVELDRKE 571 >UniRef50_C2D7P8 Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7P8_9ACTN Length = 1180 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 161/582 (27%), Positives = 263/582 (45%), Gaps = 33/582 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGML-----PWQQLSG 56 + Q+ R E+++ LP L+ R+ SRG + +++ER + L + G Sbjct: 9 RWQLLSRDLELEDKLINTCRLPRLVARVLVSRGYTTQEQIERFLIASLERDWVNPLFIPG 68 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + + + +A RI+V GDFD DG +TAL A+++LG + + +P+R +GY Sbjct: 69 LAAVADRVQHALDSHERIVVFGDFDVDGICATALLTDALKTLG-ACVYPFIPSRVHEGYS 127 Query: 117 LSPEVVDQA-HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 LS D+ A LI+TVDNGI +H ++ G+ V++TDHH P Sbjct: 128 LSKAAFDRLVAAYNPNLIITVDNGIDAHEQCLYSIQHGVDVVITDHHEPTSQTLPVVPTA 187 Query: 176 NPNL-RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 NP L C LAG GVA L+ L + + LD+ LGT+ Sbjct: 188 NPKLNPSCAS--FELAGAGVALKLVDVLGAAYGKPYLW----------KDYLDVATLGTI 235 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 +D V L NR L +G+ IRA R G+ AL V D +L +L PRLNAA Sbjct: 236 SDRVKLTPENRALVTEGIRCIRAS-SRLGLSALARVCGIDIHATMPEELASSLIPRLNAA 294 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRLD + LL ++ EA ANEL+ LN R+ +E+ EA + + + + Sbjct: 295 GRLDRVQTAYNLLQAQSLSEAYTYANELEELNICRRNLEKKACDEAFEQAKDVVKQQ--- 351 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 + + +W++GV+GI+ASR+ + P A + A G+ K SGRS+ +++ D +ER Sbjct: 352 KHVIFVSSSQWNEGVIGIVASRLARAYELPAFACSIA-QGSAKCSGRSVGNVNLFDVVER 410 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + +++FGGHA A G + D Q + +L + P+ Sbjct: 411 ----FGSQLIRFGGHAAAVGFTCSPDILPTIIQHVERTIDALPASALYAPRELV-IPVDL 465 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 +E+T+ L P+G P+F + + + VG + + L I Sbjct: 466 SEITVSDLDSLEMLQPFGSGNERPIFAAHNIEMRNKMRVGAHNNHMRFVAQQHKVRLSSI 525 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINE-FRGNRSLQIIIDNI 574 F + + + +NE ++G +++I +I Sbjct: 526 VFKASHIQNLMSLHDTCDIVFNP-VNEVWQGRVKPKLMIKDI 566 >UniRef50_D0GIS6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GIS6_9FUSO Length = 568 Score = 480 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 149/583 (25%), Positives = 276/583 (47%), Gaps = 33/583 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSG 56 M +++ R+ L+ RL +RG+ S +E+E+ + +L + Sbjct: 1 MNWEMKNYDRDYLAFKSGEFGESELITRLLLNRGISSKEEVEKFLNSSENDLLSPFLIEN 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++ E + A + ++I+ GD+D DG ++ A V+ R LG N+DY +PNR +G G Sbjct: 61 MDEVTERILKAKKNREKVIIYGDYDVDGISAAAYLVIVFRKLGM-NVDYYIPNRAHEGVG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA-II 175 ++ ++ R A L +TVD I S+ V + I +I+TDHH + + I Sbjct: 120 INSNLIKYLIKRNAGLFITVDTNIGSYEEVMMLKRNNIDIIITDHHRQTEEIKNFNIPTI 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP + N+P+K+L+G GVAF L A+ +++ + L + LD+V +GTVA Sbjct: 180 NPKI-GNNYPNKNLSGSGVAFKLADAV---------YEKCGVNKKILYDYLDIVMIGTVA 229 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 DVVP+ NR + +G+ +R K + G+K +L + + SD+GF + P NA G Sbjct: 230 DVVPMTDENRFIIKKGLYNLRKTKIK-GMKYILNYLRINPNNITTSDVGFYIAPIFNALG 288 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+D+ + V + ++ + + E+ N+ R+ +E + E ++L + P Sbjct: 289 RIDNSKMVVEFFIEEDDFKLFSIIEEMKKANKIRRYLEIEIYNEIEEKIQRLNK-----P 343 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + M +WH GV+G++ SRI +++ PVI + +G K S RSI+GL++ D L+ Sbjct: 344 KYIFMKSRKWHSGVIGVVCSRISIKYNIPVILVSI-KNGYGKASCRSIEGLNIFDMLKET 402 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + +FGGH +AAG + E K + + + + S ++ + D L+ Sbjct: 403 SDKFE----RFGGHDLAAGFLVSEKYLKEIEIYLKKRLVTA-NKSNIEKVLYIDSVLNIE 457 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDG---HFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 ++ + P+G EP F F + V RH K ++ ++ Sbjct: 458 QINKSKVLDINRLSPFGLDNQEPNFVDKGIKFISFTKFGVNNRHFKGFIK--KNDRIISV 515 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 I +N+ L N ++ ++ Y R + +++ + + Sbjct: 516 IGYNLGHKLKFKNINKKYEIVYTPSFKSVRTDLFIELKLKDFR 558 >UniRef50_A6DSV4 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DSV4_9BACT Length = 572 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 158/510 (30%), Positives = 259/510 (50%), Gaps = 23/510 (4%) Query: 6 QLRRREVDETADLPAELPPLLRRLYASRGV--RSAQELERSVKGMLPWQQLSGVEKAVEI 63 ++ ++ + +L + A+R + ++A S+ + + ++K VE Sbjct: 14 EVENEDLSDIQG-RFQLSLPAATVLANRSLLKKNADCFNASLASLSDPFRFPDMQKTVER 72 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 ++ + ++ +IIV GD+D DG TS+ L ++S G ++ + NR DGYG +P + Sbjct: 73 IFESIQKNEKIIVHGDYDTDGVTSSTLLNWVIKSYG-ADSSVFISNRLHDGYGPTPTTMQ 131 Query: 124 QAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 GA L+++ D GI+S ++A G+ I+TDHH P D LP A AIINP + Sbjct: 132 NQIEAGASLVISTDCGITSFEAADYAHENGLDFIITDHHNPADQLPKAYAIINPRITTEL 191 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 SLAGVGV+F L AL F G A +L LDLVALGT+AD PL Sbjct: 192 IDLYSLAGVGVSFKLCHALLKFGSKIG-----KKATIDLRNGLDLVALGTIADSCPLIGE 246 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NR L G+ + RPG++AL E D + A+D+ + P++NAAGR+ D V Sbjct: 247 NRALVKNGLKLLNVNP-RPGVRALYEATTLDTH-ITAADISRKISPKINAAGRVGDPMVS 304 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 LL ++I E+R L +L N+ R+ E+ +EAL + ++ +S P L + P Sbjct: 305 AKLLASNSIHESRQLVGQLKNFNRIRRNAEKSAYMEALQIAKEQAKSS---PPLLLVVGP 361 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGM 422 +WH GV+G++++++ + F P + + + L GSGRS G+++ + L+ L Sbjct: 362 DWHPGVIGLISTKLTKHFGLPSVVLSKDKNPDELLGSGRSCDGINLLEGLKHCSDL---- 417 Query: 423 MLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV--SDGPLSPAEMTME 480 + FGGH MAAGLSL + + F+++ EL+ + + + DG S ++ + Sbjct: 418 LNNFGGHPMAAGLSLAVNNLEAFREKIIELLESDVLDKVEKKRKHQYYDGEFSFQDLNEQ 477 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQQR 510 L P+G P+F F+ +Q R Sbjct: 478 FIGDLERMEPFGNGNDAPVFL--FKNVQIR 505 >UniRef50_D1CG92 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG92_THET1 Length = 564 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 148/545 (27%), Positives = 252/545 (46%), Gaps = 34/545 (6%) Query: 24 PLLRRLYASRGVRSAQELERSV---------KGMLPWQQLSGVEKAVEILYNAFREGTRI 74 P RL SRG+ S + + + +L E+A + A I Sbjct: 21 PATERLLLSRGLVSVHDRDLFFVENPLYQLGDLLGNPLELPDAEQAAFEILKAINNNEDI 80 Query: 75 IVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV 134 + GD+D DG T++A+ ++ LG + + +P+R ++G+GL+ + + +G + +V Sbjct: 81 WIYGDYDVDGVTASAILGRGLKQLGVTP-KFYIPHRIDEGFGLNKDAIATIAEKGCKTLV 139 Query: 135 TVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGV 194 TVD G S+ VE+A+SLG+ VI+TDHH + ++NP + N+P + G GV Sbjct: 140 TVDCGASNVEEVEYAKSLGLRVIITDHHTTTSEIDFPVPVVNPIRQTGNYPYREHTGAGV 199 Query: 195 AFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSR 254 A+ + A+ + + L+ L ALGT+ DV PL NR+L G+ Sbjct: 200 AYSFLRAI--------VYKSPIRKRIKVHPLIQLAALGTIGDVAPLTGENRLLVKAGLQS 251 Query: 255 IRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 +R G++AL + + + + +DL F + PRLN+AGR+ V + LLL D+ + Sbjct: 252 MRTVPL-VGLRALFQRSGIISSFVNEADLAFKIVPRLNSAGRMSHAKVALKLLLTDDALD 310 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILA 374 A ++ L+ LN RK M +EA + E + + + W ++GI+A Sbjct: 311 AFKISMHLEKLNALRKATTDSMLVEAREMIESGTALNGNI---ITVAKDGWSPALLGIIA 367 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 +++ + +PVI + +GD + S RSI G + L +L ML+FGGH+ AAG Sbjct: 368 AQLVREYGKPVIVASISGD-KARASVRSITGKDIMIPLNNCSSL----MLEFGGHSHAAG 422 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 + K Q L E + S ++ D +SP ++ +++ LL P+GQ Sbjct: 423 FTC---KVSDLQDVHHHLDAEIPNISAIEDLPEVDIEVSPQDINEDLSNLLCRMAPFGQG 479 Query: 495 FPEPLFD-GHFRLLQQRLVGER--HLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQ 551 PEP F ++ +LVG HLK +E G ++ + F + Sbjct: 480 NPEPRFGISDVQMHNIQLVGSEFSHLKFEIEGA-SGRRIEVLGFGAGSYYREAIRANTAS 538 Query: 552 LAYKL 556 + Sbjct: 539 MIVAP 543 >UniRef50_B5YFK1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Dictyoglomus RepID=B5YFK1_DICT6 Length = 824 Score = 476 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 152/595 (25%), Positives = 276/595 (46%), Gaps = 41/595 (6%) Query: 1 MKQQIQL--RRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQ 53 M++ I L + +E + PLL RL +RG++ + + +R + P+ Sbjct: 1 MRRWILLFEENKGQEEVFAKEIGVSPLLARLLLNRGIKDSLQAKRFLNPKIEDLYDPFLY 60 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 +EKA+ L ++++ GD+D DG T+T + + + G ++ + +P+R E+ Sbjct: 61 FPDLEKAMNFLVKLRDSKRKVLIFGDYDVDGITATTIMYRVLSNWGW-DVSFYIPHRLEE 119 Query: 114 GYGLSPEVVDQAHARG--AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGD-TLPA 170 GYGL + + +A ++ L++TVD GI S +E+ R G+ VIVTDHH+P + +P Sbjct: 120 GYGLKEKSIKKALSQNEFVSLLITVDCGIKSRKEIEYLRKNGVEVIVTDHHIPEEGNIPE 179 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A + NP L N+P +AGVGVAF + AL F+ + ++ +L+LV Sbjct: 180 ALLVFNPYL--NNYPYPYMAGVGVAFKFLKALGDFIGKDIYEEKG---------ILELVT 228 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKL-AASDLGFALGP 289 LGT+ D++ L NRIL G+ + GIK L+ D + D+ F + P Sbjct: 229 LGTLGDLMELKDENRILVKFGLEKFL-NPDLVGIKTLIRKVGLDKNTIINTKDVIFNITP 287 Query: 290 RLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLER 349 R+N+ GR ++ + LLL DN+ EA +L +LD N+ R+E + + A + + E Sbjct: 288 RINSIGRFKEVEEAIRLLLTDNVEEAEILCEKLDEFNRKRREEVERVYEIAKEMLREEEI 347 Query: 350 SRDTLPGGLAMYHPEWHQ---GVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGL 406 + + +Y+P W + GV+GI+AS + E ++ P GD + SGR ++ + Sbjct: 348 ENNK---AVFLYNPLWGRDVGGVMGIVASMLVEEYNVPFFLGRKEGD-FVVFSGRGVEDV 403 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 ++ D + L + ++ FGGH A G SL E +++F+ +L E +V Sbjct: 404 NLFDFISNLSS----YLVNFGGHRGAVGFSLFEKDYEIFKINAIKLANELWKDVDFTPKV 459 Query: 467 VSDGPLSPAEMTME----VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVE 522 D +S ++ E L P+G EP F ++ + ++ Sbjct: 460 KIDAEISLDKIKSENIGKFLSELDLLPPFGPGNEEPRFKISSTVIAYFEKMGNGGRYKIK 519 Query: 523 PVG-GGPLLDGIAFNVD-TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 G +L F++ + + + +++ ++G ++ Sbjct: 520 IGDISGKVLSTPIFSIGIEEDAFKESPQTLDIILRIEKEGYQGREYFNFYLEEWR 574 >UniRef50_Q1IXZ0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IXZ0_DEIGD Length = 702 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 171/557 (30%), Positives = 266/557 (47%), Gaps = 51/557 (9%) Query: 21 ELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80 + P L ++ +RG+ + L+ ++ + +A + A R G RI + GD+ Sbjct: 32 GVAPPLAQVLHARGL-TPAHLDAPLRLTPNPA----LREAARRIVGAIRAGRRIRIHGDY 86 Query: 81 DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140 DADG ++TA +L +R +G + + +P+R +GYGL P+ V++ HA L+VTVD G+ Sbjct: 87 DADGVSATATLILGLREVG-AEVHGFIPHRLNEGYGLHPDRVEE-HAAACDLLVTVDCGV 144 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR-DCNFPSKSLAGVGVAFYLM 199 ++ V + G+ VIVTDHH PG P +++P+ + +L G GVA++L+ Sbjct: 145 TNLEEVRALLARGLDVIVTDHHAPGPDYPDCL-VVHPHRTTGYDPELHNLTGAGVAYHLL 203 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 A+ L +P EL L LGT+ADV PL NR L G+ + A Sbjct: 204 WAVHEEL-----------GLPAPLELAGLATLGTIADVAPLIGENRALVRAGLDAL-ATS 251 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 PG++ALL + + D+ F L P +NAAGRL + + + LL + EAR LA Sbjct: 252 TLPGVRALLNAKRVERPSV--RDVAFLLAPLVNAAGRLGEADLALQLLTTTSDHEARTLA 309 Query: 320 NELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKE 379 L++ NQ R+ ++ M EAL L D + + P+WH GV+GI+AS++ E Sbjct: 310 TYLESRNQERRVLQDRMYEEALGLA-------DPEEPAIVVTKPDWHAGVMGIVASKLVE 362 Query: 380 RFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEE 439 FH+PV A KGS RS G+ + L ++ ++GGH AAG +L+E Sbjct: 363 TFHKPVYIVAQ-----GKGSVRSTPGISAVEGLR----YSHDLLKRYGGHPGAAGFALDE 413 Query: 440 DKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPL 499 F+ + R V ++ P D PL T E+ + P+G P PL Sbjct: 414 ANFEALRDRLHTYVRQFPRP---VPMWRLDAPLPTRAATPELVRQAAAFEPYGTGHPPPL 470 Query: 500 FDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDIN 559 + L RLVG+R + + G L GI A+ + LA L Sbjct: 471 WHMREVLSSTRLVGKRGDSLQFQIGG----LRGIQHGERDAVPGER-----DLATHLVRG 521 Query: 560 EFRGNRSLQIIIDNIWP 576 E+RG L++ + P Sbjct: 522 EWRGQTRLELHGQALRP 538 >UniRef50_B8H563 Single-stranded-DNA-specific exonuclease recJ n=8 Tax=Caulobacteraceae RepID=B8H563_CAUCN Length = 606 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 177/557 (31%), Positives = 274/557 (49%), Gaps = 18/557 (3%) Query: 26 LRRLYASRGVR---SAQELERSVKGMLP-WQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 L + SRGV + L ++K + P + +++A EIL +A G +V D+D Sbjct: 49 LAKALVSRGVTLEHAEHYLRPTLKALFPDPSLFTDMDRAAEILIDALERGRPTMVFADYD 108 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 DGATS A V R +G + +P+R +GYG SP + GA+L+VT+D G + Sbjct: 109 VDGATSAAQLVRWFRHMGVE-LPIYIPDRLTEGYGPSPAAFRKIRDGGAELVVTLDCGAA 167 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLA 201 ++ + A +G+ V+V DHHL + PAA A++NPN C LA GV F L+ A Sbjct: 168 AYDAIASAGEIGLEVVVIDHHLMREDPPAAAAVVNPNRPGCPSGQGVLAAAGVTFVLLTA 227 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 261 L R +G F E P+ + LDLVALG V DV L NR LT G+ + A Sbjct: 228 LNREARKRGLFTEDR-PQPDPRQWLDLVALGEVCDVTQLVGFNRALTALGLRAMGA-WAN 285 Query: 262 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 321 PG+KAL EV + + GF LGPR+NA GR+ +G LL D+ EAR LA E Sbjct: 286 PGLKALFEVGKGSGEP-SVFTAGFILGPRINAGGRVGRSDLGARLLSTDDPLEARALAEE 344 Query: 322 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 381 LD+LN RK +E + EA + E+ P + + +WH GV+GI+A R++ER+ Sbjct: 345 LDSLNTERKAVEAAVVEEAAAMLERGSNFNPDAP-VIVVAGDDWHPGVIGIVAGRLRERY 403 Query: 382 HRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEED 440 +PV+ KGSGRS G+++ A++ G+++ GGHAMAAGLS+ + Sbjct: 404 RKPVVVIGIDRAANVGKGSGRSQSGVNLGRAIQ--AAFEAGLLMAGGGHAMAAGLSIRPE 461 Query: 441 KFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF 500 F+ E + ++ ++ V D + P + + P+G PEPLF Sbjct: 462 MIPEFRAFLEERLAGEMEAVGVEA-VEVDALVQPRAANRALLDDFQRLAPFGPGNPEPLF 520 Query: 501 D-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT---ALWPDNGVREVQLAYKL 556 R + + H+++ + G + I++ G + + KL Sbjct: 521 ALSQVRPERVSALKGGHVRMDLVGP-TGDRIKAISWRSAETPLGQRLLAGGGPLDVVGKL 579 Query: 557 DINEFRGNRSLQIIIDN 573 +++ G +Q+ I++ Sbjct: 580 KPDDYMGRNGVQLEIED 596 >UniRef50_A0LQ39 Phosphoesterase, RecJ domain protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LQ39_SYNFM Length = 553 Score = 471 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 169/572 (29%), Positives = 261/572 (45%), Gaps = 32/572 (5%) Query: 6 QLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILY 65 +R + V + P + ++R L A+RG L+ ++K + + G++ E++ Sbjct: 1 MIRPQWVISAQEKPESVRDVVRILLANRG-AGPAFLDGTLKELETCLAIRGMDAGAELMA 59 Query: 66 NAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA 125 GTRI++VGD+D DG TS A L +R +G N + +VP R +GYG+ + Sbjct: 60 EHLAAGTRIVLVGDYDCDGITSLAQVSLFLREIGYGNFETVVPRR-SEGYGIPERAILDH 118 Query: 126 HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT-LPAAEAIINPNLRDCNF 184 G L V +D G V AR G IV DHH D L A +INP +C Sbjct: 119 PDAG--LYVAMDCGTLDRKAVGMARERGADCIVIDHHEVPDQGLAPATVLINPKHSECES 176 Query: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLA-ELLDLVALGTVADVVPLDAN 243 K G+ + LR LR P L L L A+ TVAD+VPL Sbjct: 177 TFKEFCSSGLTLLFLARLRRALR--------GFPKPALGGRFLILAAIATVADMVPLVEG 228 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NRIL G++ P + L++ A + + A LG+ +GPR+NAAGR+ D Sbjct: 229 NRILVRSGLNCANQVDYPP-LDQLVQKAGLSGKSITAGHLGYYIGPRINAAGRMADARTA 287 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 LL+ D+ A LA +L+ N R+ E + E R L M Sbjct: 288 YELLVEDDPSAAARLAEQLNRYNTQRQNQEDAVVGEIRQRL----ADRKVFGRTLVMADA 343 Query: 364 EWHQGVVGILASRIKERFHR-PVIAFA-PAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 W G++GI+ASR+++ FH PV+ F+ +G +GS RSI G + AL D + Sbjct: 344 GWPAGIIGIVASRVQQEFHYGPVVVFSVDEAEGIARGSARSIPGFDIHSALASCDDV--- 400 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 ML++GGH MAAG+++ D+ F RF E W + Q D L +++++ Sbjct: 401 -MLRWGGHKMAAGMTIALDRMDEFAHRFEESALHW-PAHVFQPRGRVDAELDTGLISVDL 458 Query: 482 AQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGER--HLKVMVEPVGGGPLLDGIAFNVD 538 + L P G P P F R+ ++ G HL++ ++ GG G A + Sbjct: 459 YRELTKLEPHGLGNPTPTFASRGVRVQVKKTFGRDASHLRLQLDQRIGGVFWRG-ARHFR 517 Query: 539 TALWPDNGVREVQLAYKLDINEFRGNRSLQII 570 +A D + + Y+LD +++ G +Q+ Sbjct: 518 SAGLRD--GETMDVVYQLDWDDYAGRPVMQVR 547 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P28355 Single-stranded-DNA-specific exonuclease recJ n=... 703 0.0 UniRef50_Q2NRF9 Single-stranded-DNA-specific exonuclease n=4 Tax... 675 0.0 UniRef50_P39693 Single-stranded-DNA-specific exonuclease recJ n=... 668 0.0 UniRef50_A4J2G7 Single-stranded-DNA-specific exonuclease RecJ n=... 659 0.0 UniRef50_O32044 Single-stranded-DNA-specific exonuclease recJ n=... 653 0.0 UniRef50_UPI0001694BF0 YrvE n=1 Tax=Paenibacillus larvae subsp. ... 647 0.0 UniRef50_A6NR30 Putative uncharacterized protein n=1 Tax=Bactero... 641 0.0 UniRef50_C6D7X7 Single-stranded-DNA-specific exonuclease RecJ n=... 638 0.0 UniRef50_C0ZAP8 Putative uncharacterized protein n=1 Tax=Breviba... 638 0.0 UniRef50_A6TQN7 Single-stranded-DNA-specific exonuclease RecJ n=... 636 0.0 UniRef50_A3DF49 Single-stranded-DNA-specific exonuclease RecJ n=... 636 0.0 UniRef50_B4RXN3 Single-stranded-DNA-specific exonuclease RecJ n=... 634 e-180 UniRef50_Q5QYV7 Single-stranded DNA-specific exonuclease n=1 Tax... 634 e-180 UniRef50_B8CXF2 Single-stranded-DNA-specific exonuclease RecJ n=... 631 e-179 UniRef50_Q183I1 Putative single-stranded-DNA-specific exonucleas... 631 e-179 UniRef50_A8VTW9 Holliday junction DNA helicase RuvB n=2 Tax=Baci... 630 e-179 UniRef50_C8VZX5 Single-stranded-DNA-specific exonuclease RecJ n=... 629 e-179 UniRef50_UPI0001789928 single-stranded-DNA-specific exonuclease ... 629 e-179 UniRef50_B1HV84 Single-stranded-DNA-specific exonuclease recJ n=... 626 e-178 UniRef50_C6RPU9 Single-stranded-DNA-specific exonuclease RecJ n=... 626 e-178 UniRef50_C4V0G0 Possible single-stranded-DNA-specific exonucleas... 624 e-177 UniRef50_A5D3H7 Putative uncharacterized protein n=1 Tax=Pelotom... 623 e-177 UniRef50_C9KKH1 Single-stranded-DNA-specific exonuclease RecJ n=... 622 e-177 UniRef50_A9B300 Single-stranded-DNA-specific exonuclease RecJ n=... 620 e-176 UniRef50_B3E2R5 Single-stranded-DNA-specific exonuclease RecJ n=... 620 e-176 UniRef50_B2A2F5 Single-stranded-DNA-specific exonuclease RecJ n=... 618 e-175 UniRef50_A1HMM2 Single-stranded-DNA-specific exonuclease RecJ n=... 616 e-175 UniRef50_C8NEZ1 Single-stranded-DNA-specific exonuclease RecJ n=... 615 e-174 UniRef50_B8FQU1 Single-stranded-DNA-specific exonuclease RecJ n=... 612 e-173 UniRef50_Q3A3C6 Single-stranded-DNA-specific exonuclease RecJ n=... 611 e-173 UniRef50_C6IZW2 Single-stranded-DNA-specific exonuclease RecJ n=... 610 e-173 UniRef50_Q8EPR4 Single-strand DNA-specific exonuclease n=1 Tax=O... 608 e-172 UniRef50_B0VNC7 SsDNA exonuclease, 5'--> 3' specific , Mg depend... 607 e-172 UniRef50_Q1WT52 Single-stranded-DNA-specific exonuclease n=5 Tax... 606 e-172 UniRef50_C9LKW7 Single-stranded-DNA-specific exonuclease RecJ n=... 606 e-172 UniRef50_C6P9C5 Single-stranded-DNA-specific exonuclease RecJ n=... 604 e-171 UniRef50_Q2LTE9 Single-stranded DNA-specific exonuclease n=1 Tax... 604 e-171 UniRef50_D2RLC4 Single-stranded-DNA-specific exonuclease RecJ n=... 602 e-171 UniRef50_C1SHI0 Exonuclease RecJ n=1 Tax=Denitrovibrio acetiphil... 601 e-170 UniRef50_Q39XC5 RecJ exonuclease n=6 Tax=Desulfuromonadales RepI... 600 e-170 UniRef50_B6SE72 RecJ n=2 Tax=Kingella RepID=B6SE72_9NEIS 600 e-170 UniRef50_B0VEZ1 Putative ssDNA exonuclease, 5'--> 3'-specific n=... 598 e-169 UniRef50_A0L8H3 Exonuclease RecJ n=2 Tax=Proteobacteria RepID=A0... 597 e-169 UniRef50_D2MJC9 Single-stranded-DNA-specific exonuclease RecJ n=... 596 e-169 UniRef50_C0N9A7 Single-stranded-DNA-specific exonuclease RecJ n=... 595 e-168 UniRef50_UPI0000E0E6D4 single-stranded-DNA-specific exonuclease ... 595 e-168 UniRef50_A7VWX6 Putative uncharacterized protein n=1 Tax=Clostri... 595 e-168 UniRef50_D1BND6 Single-stranded-DNA-specific exonuclease RecJ n=... 594 e-168 UniRef50_C6VR18 Single-strand DNA-specific exonuclease RecJ n=6 ... 593 e-168 UniRef50_A9IQX3 Single-stranded-DNA-specific exonuclease n=163 T... 593 e-168 UniRef50_C0XKS9 Exonuclease RecJ n=3 Tax=Lactobacillus RepID=C0X... 593 e-168 UniRef50_Q11NW2 Single-strand DNA specific exonuclease n=13 Tax=... 593 e-168 UniRef50_Q038P0 Exonuclease RecJ n=8 Tax=Lactobacillus RepID=Q03... 593 e-168 UniRef50_A5UUU1 Single-stranded-DNA-specific exonuclease RecJ n=... 593 e-168 UniRef50_B2RMC6 Single-stranded-DNA-specific exonuclease n=53 Ta... 592 e-168 UniRef50_B8DHM3 Single-stranded-DNA-specific exonuclease RecJ n=... 592 e-167 UniRef50_D2QL07 Single-stranded-DNA-specific exonuclease RecJ n=... 591 e-167 UniRef50_A4BBM4 Single-stranded-DNA-specific exonuclease RecJ n=... 590 e-167 UniRef50_Q3A9Z7 Single-stranded DNA-specific exonuclease RecJ n=... 589 e-166 UniRef50_Q3MAJ6 Exonuclease RecJ n=6 Tax=Cyanobacteria RepID=Q3M... 589 e-166 UniRef50_C0X5S7 Single-stranded-DNA-specific exonuclease RecJ n=... 588 e-166 UniRef50_C5CED3 Single-stranded-DNA-specific exonuclease RecJ n=... 587 e-166 UniRef50_Q26GN0 Single-stranded DNA-specific exonuclease n=7 Tax... 586 e-166 UniRef50_A7H9Y9 Single-stranded-DNA-specific exonuclease RecJ n=... 586 e-166 UniRef50_A5MZ56 RecJ n=30 Tax=Clostridium RepID=A5MZ56_CLOK5 586 e-166 UniRef50_B0K968 Single-stranded-DNA-specific exonuclease RecJ n=... 586 e-166 UniRef50_Q1N0E3 Single-stranded-DNA-specific exonuclease RecJ n=... 585 e-165 UniRef50_A6BZD1 Single-strand DNA-specific exonuclease n=2 Tax=P... 585 e-165 UniRef50_A4SDH3 Single-stranded-DNA-specific exonuclease RecJ n=... 585 e-165 UniRef50_Q2YBC4 Exonuclease RecJ n=1 Tax=Nitrosospira multiformi... 585 e-165 UniRef50_B7K3K2 Single-stranded-DNA-specific exonuclease RecJ n=... 585 e-165 UniRef50_A8SGF1 Putative uncharacterized protein n=1 Tax=Faecali... 584 e-165 UniRef50_Q0AYS8 Single-stranded DNA-specific exonuclease-like pr... 584 e-165 UniRef50_Q03F38 Exonuclease RecJ n=3 Tax=Lactobacillales RepID=Q... 582 e-165 UniRef50_B0PEB7 Putative uncharacterized protein n=1 Tax=Anaerot... 582 e-164 UniRef50_B8FE66 Single-stranded-DNA-specific exonuclease RecJ n=... 582 e-164 UniRef50_C5EEP4 Putative uncharacterized protein n=1 Tax=Clostri... 582 e-164 UniRef50_B1YJG2 Single-stranded-DNA-specific exonuclease RecJ n=... 581 e-164 UniRef50_C6NUA0 Single-stranded-DNA-specific exonuclease recJ n=... 581 e-164 UniRef50_Q6F719 SsDNA exonuclease, 5'--> 3' specific , Mg depend... 580 e-164 UniRef50_C5RCA3 Recombination protein J n=1 Tax=Weissella parame... 580 e-164 UniRef50_C5QT22 Recombination protein RecJ n=2 Tax=Staphylococcu... 580 e-164 UniRef50_C7XTQ6 Single-stranded-DNA-specific exonuclease RecJ n=... 580 e-164 UniRef50_D0MFV1 Single-stranded-DNA-specific exonuclease RecJ n=... 579 e-164 UniRef50_B2GBD3 Single-strand DNA-specific exonuclease n=21 Tax=... 579 e-163 UniRef50_Q67LM2 Single-strand DNA-specific exonuclease n=1 Tax=S... 579 e-163 UniRef50_C6XU81 Single-stranded-DNA-specific exonuclease RecJ n=... 577 e-163 UniRef50_UPI00016BFB11 single-stranded-DNA-specific exonuclease ... 577 e-163 UniRef50_A4XHU1 Single-stranded-DNA-specific exonuclease RecJ n=... 574 e-162 UniRef50_B9E712 Putative uncharacterized protein n=1 Tax=Macroco... 573 e-162 UniRef50_B6BWW7 Single-stranded-DNA-specific exonuclease RecJ n=... 573 e-162 UniRef50_C7H6M6 Single-stranded-DNA-specific exonuclease RecJ n=... 572 e-162 UniRef50_B8HKK4 Single-stranded-DNA-specific exonuclease RecJ n=... 572 e-161 UniRef50_A8YVP8 Single-stranded-DNA-specific exonuclease n=6 Tax... 571 e-161 UniRef50_A7HJW8 Single-stranded-DNA-specific exonuclease RecJ n=... 571 e-161 UniRef50_C1A4A6 Single-stranded-DNA-specific exonuclease n=1 Tax... 571 e-161 UniRef50_C0QDK3 RecJ n=1 Tax=Desulfobacterium autotrophicum HRM2... 571 e-161 UniRef50_Q2YT94 Single-strand DNA-specific exonuclease n=60 Tax=... 569 e-161 UniRef50_A5WDK1 Exonuclease RecJ n=3 Tax=Psychrobacter RepID=A5W... 569 e-160 UniRef50_Q1IIX8 Single-stranded-DNA-specific exonuclease RecJ n=... 568 e-160 UniRef50_Q2SXD4 Single-stranded-DNA-specific exonuclease RecJ n=... 568 e-160 UniRef50_C4GBT7 Putative uncharacterized protein n=1 Tax=Shuttle... 568 e-160 UniRef50_Q5HNR5 Single-stranded-DNA-specific exonuclease RecJ n=... 568 e-160 UniRef50_Q1LTU5 Single-stranded-DNA-specific exonuclease RecJ n=... 567 e-160 UniRef50_B9XN50 Single-stranded-DNA-specific exonuclease RecJ n=... 567 e-160 UniRef50_C6X239 Single-stranded-DNA-specific exonuclease recJ n=... 567 e-160 UniRef50_A5FQT9 Single-stranded-DNA-specific exonuclease RecJ n=... 567 e-160 UniRef50_C0WCD6 Exonuclease recJ n=1 Tax=Acidaminococcus sp. D21... 567 e-160 UniRef50_C4G696 Putative uncharacterized protein n=1 Tax=Abiotro... 566 e-160 UniRef50_Q02C20 Single-stranded-DNA-specific exonuclease RecJ n=... 565 e-159 UniRef50_Q87EB5 Single-stranded DNA exonuclease n=23 Tax=Bacteri... 565 e-159 UniRef50_D2R2J0 Single-stranded-DNA-specific exonuclease RecJ n=... 565 e-159 UniRef50_Q12ES6 Single-stranded-DNA-specific exonuclease RecJ n=... 565 e-159 UniRef50_UPI0001C37215 single-stranded-DNA-specific exonuclease ... 564 e-159 UniRef50_A8MGN3 Single-stranded-DNA-specific exonuclease RecJ n=... 564 e-159 UniRef50_Q1PZA9 Similar to exonuclease RecJ n=1 Tax=Candidatus K... 564 e-159 UniRef50_C3WCZ7 Single-stranded-DNA-specific exonuclease recJ n=... 563 e-159 UniRef50_C6JNX8 Single-stranded-DNA-specific exonuclease recJ n=... 562 e-158 UniRef50_C6LAA7 Single-stranded-DNA-specific exonuclease RecJ n=... 561 e-158 UniRef50_Q8DJI0 Tll1243 protein n=1 Tax=Thermosynechococcus elon... 561 e-158 UniRef50_D0KXT7 Single-stranded-DNA-specific exonuclease RecJ n=... 561 e-158 UniRef50_B2IMS8 Single-stranded-DNA-specific exonuclease RecJ n=... 560 e-158 UniRef50_A8F454 Single-stranded-DNA-specific exonuclease RecJ n=... 559 e-158 UniRef50_C0EW92 Putative uncharacterized protein n=2 Tax=Clostri... 559 e-157 UniRef50_B1C9H3 Putative uncharacterized protein n=1 Tax=Anaerof... 559 e-157 UniRef50_Q049X0 Exonuclease RecJ n=22 Tax=Lactobacillus RepID=Q0... 558 e-157 UniRef50_C2M9T5 Single-stranded-DNA-specific exonuclease RecJ n=... 558 e-157 UniRef50_C7HTZ0 Single-stranded-DNA-specific exonuclease RecJ n=... 557 e-157 UniRef50_C4FWR9 Putative uncharacterized protein n=1 Tax=Catonel... 557 e-157 UniRef50_B1I335 Single-stranded-DNA-specific exonuclease RecJ n=... 556 e-157 UniRef50_A8ZTX7 Single-stranded-DNA-specific exonuclease RecJ n=... 556 e-156 UniRef50_B0CAF5 Single-stranded-DNA-specific exonuclease RecJ n=... 555 e-156 UniRef50_B1ZV73 Single-stranded-DNA-specific exonuclease RecJ n=... 555 e-156 UniRef50_D2LJ47 Single-stranded-DNA-specific exonuclease RecJ n=... 554 e-156 UniRef50_Q03W56 Single-stranded DNA-specific exonuclease n=3 Tax... 552 e-155 UniRef50_C7NEA4 Single-stranded-DNA-specific exonuclease RecJ n=... 552 e-155 UniRef50_Q2S0E3 Single-stranded-DNA-specific exonuclease RecJ n=... 552 e-155 UniRef50_C8WA12 Single-stranded-DNA-specific exonuclease RecJ n=... 550 e-155 UniRef50_B0MLV1 Putative uncharacterized protein n=1 Tax=Eubacte... 550 e-155 UniRef50_D1AWA1 Single-stranded-DNA-specific exonuclease RecJ n=... 549 e-154 UniRef50_C5NYP0 Single-stranded-DNA-specific exonuclease RecJ n=... 549 e-154 UniRef50_A1AWT7 Single-stranded-DNA-specific exonuclease RecJ n=... 549 e-154 UniRef50_B0S1I9 Single-strand DNA-specific exonuclease n=3 Tax=C... 548 e-154 UniRef50_A6LJS2 Single-stranded-DNA-specific exonuclease RecJ n=... 548 e-154 UniRef50_C7RHH6 Single-stranded-DNA-specific exonuclease RecJ n=... 548 e-154 UniRef50_B0P091 Putative uncharacterized protein n=4 Tax=Clostri... 548 e-154 UniRef50_A9KLD3 Single-stranded-DNA-specific exonuclease RecJ n=... 547 e-154 UniRef50_B7AQW7 Putative uncharacterized protein n=1 Tax=Bactero... 547 e-154 UniRef50_Q7NPL4 Single-strand-DNA-specific exonuclease n=1 Tax=G... 546 e-154 UniRef50_B2ULA8 Single-stranded-DNA-specific exonuclease RecJ n=... 545 e-153 UniRef50_C9RBA5 Single-stranded-DNA-specific exonuclease RecJ n=... 545 e-153 UniRef50_UPI00017452AB single-stranded-DNA-specific exonuclease ... 543 e-153 UniRef50_A9BF16 Single-stranded-DNA-specific exonuclease RecJ n=... 543 e-153 UniRef50_C7MMI3 Single-stranded-DNA-specific exonuclease RecJ n=... 543 e-153 UniRef50_C0EBF3 Putative uncharacterized protein n=1 Tax=Clostri... 542 e-152 UniRef50_UPI00016C4908 single-strand DNA-specific exonuclease n=... 542 e-152 UniRef50_UPI0000E87D07 exodeoxyribonuclease VII, single-stranded... 542 e-152 UniRef50_Q8D2B5 RecJ protein n=1 Tax=Wigglesworthia glossinidia ... 542 e-152 UniRef50_A3DBX0 Single-stranded-DNA-specific exonuclease RecJ n=... 542 e-152 UniRef50_C5RPJ0 Single-stranded-DNA-specific exonuclease RecJ n=... 541 e-152 UniRef50_C0GFY2 Single-stranded-DNA-specific exonuclease RecJ n=... 541 e-152 UniRef50_C8QX81 Single-stranded-DNA-specific exonuclease RecJ n=... 540 e-152 UniRef50_Q2JN66 Single-stranded-DNA-specific exonuclease RecJ n=... 540 e-152 UniRef50_Q2RRN7 RecJ exonuclease n=3 Tax=Alphaproteobacteria Rep... 540 e-152 UniRef50_Q5FGN3 Single-stranded-DNA-specific exonuclease recJ n=... 540 e-152 UniRef50_Q0C0S5 Single-stranded-DNA-specific exonuclease RecJ n=... 540 e-152 UniRef50_C8WZW9 Single-stranded-DNA-specific exonuclease RecJ n=... 539 e-151 UniRef50_C1F3K9 Single-stranded-DNA-specific exonuclease RecJ n=... 536 e-151 UniRef50_A2SJG6 Exonuclease RecJ n=8 Tax=Proteobacteria RepID=A2... 536 e-151 UniRef50_A7KV88 SsDNA exonuclease n=1 Tax=Bacillus phage 0305phi... 535 e-150 UniRef50_C6NXH8 Single-stranded-DNA-specific exonuclease recJ n=... 533 e-150 UniRef50_A9IVX3 Single-stranded-DNA-specific exonuclease n=3 Tax... 533 e-150 UniRef50_Q1NUV0 RecJ exonuclease n=2 Tax=delta proteobacterium M... 532 e-149 UniRef50_D1N562 Single-stranded-DNA-specific exonuclease RecJ n=... 532 e-149 UniRef50_A3UCE8 Single-stranded-DNA-specific exonuclease RecJ n=... 532 e-149 UniRef50_C6XKA3 Single-stranded-DNA-specific exonuclease RecJ n=... 531 e-149 UniRef50_C6XG71 Single-stranded-DNA-specific exonuclease protein... 530 e-149 UniRef50_B0NCG3 Putative uncharacterized protein n=9 Tax=Clostri... 530 e-149 UniRef50_B9K8M2 Single stranded DNA-specific exonuclease n=6 Tax... 530 e-149 UniRef50_B5YIG7 Single-stranded-DNA-specific exonuclease RecJ n=... 530 e-149 UniRef50_D1VS52 Single-stranded-DNA-specific exonuclease RecJ n=... 530 e-149 UniRef50_A8SN06 Putative uncharacterized protein n=1 Tax=Parvimo... 529 e-149 UniRef50_C3WKI0 Single-stranded-DNA-specific exonuclease recJ n=... 528 e-148 UniRef50_D0RNX1 Single-stranded-DNA-specific exonuclease RecJ n=... 528 e-148 UniRef50_Q0API9 Single-stranded-DNA-specific exonuclease RecJ n=... 528 e-148 UniRef50_B0TAW1 Single-stranded-DNA-specific exonuclease recj n=... 527 e-148 UniRef50_Q2RHV6 Single-stranded-DNA-specific exonuclease RecJ n=... 527 e-148 UniRef50_Q137L0 Exonuclease RecJ n=91 Tax=Alphaproteobacteria Re... 525 e-147 UniRef50_Q6MEM6 Putative ssDNA-specific exonuclease n=2 Tax=Para... 524 e-147 UniRef50_Q04F00 Single-stranded DNA-specific exonuclease n=1 Tax... 524 e-147 UniRef50_C3CT94 Single-stranded-DNA-specific exonuclease recj n=... 523 e-147 UniRef50_A4E7W6 Putative uncharacterized protein n=1 Tax=Collins... 523 e-147 UniRef50_UPI0001BC5E35 single-stranded-DNA-specific exonuclease ... 522 e-146 UniRef50_A8F1S2 Single-stranded-DNA-specific exonuclease RecJ n=... 522 e-146 UniRef50_A8UBS7 Single-stranded-DNA-specific exonuclease RecJ n=... 522 e-146 UniRef50_C2KX60 Single-stranded-DNA-specific exonuclease RecJ n=... 521 e-146 UniRef50_A5TTL1 Recombination protein J n=7 Tax=Fusobacterium Re... 520 e-146 UniRef50_A5EVF0 DNA exonuclease RecJ n=2 Tax=Cardiobacteriaceae ... 520 e-146 UniRef50_UPI0001C31CC5 single-stranded-DNA-specific exonuclease ... 520 e-146 UniRef50_A1VF80 Single-stranded-DNA-specific exonuclease RecJ n=... 517 e-145 UniRef50_Q1GEL8 Single-stranded-DNA-specific exonuclease RecJ n=... 515 e-144 UniRef50_Q3AK10 Single-stranded-DNA-specific exonuclease RecJ n=... 513 e-143 UniRef50_Q7U6Y0 Possible single-stranded-DNA-specific exonucleas... 512 e-143 UniRef50_C9RIN9 Single-stranded-DNA-specific exonuclease RecJ n=... 509 e-142 UniRef50_D0LJ88 Single-stranded-DNA-specific exonuclease RecJ n=... 508 e-142 UniRef50_Q2JMF8 Single-stranded-DNA-specific exonuclease RecJ n=... 507 e-142 UniRef50_B4WFY1 Single-stranded-DNA-specific exonuclease RecJ, p... 503 e-141 UniRef50_Q1QT56 Exonuclease RecJ n=1 Tax=Chromohalobacter salexi... 503 e-141 UniRef50_A6Q667 Single-strand DNA-specific exonuclease n=1 Tax=S... 503 e-141 UniRef50_UPI00016B257B single-stranded-DNA-specific exonuclease ... 503 e-141 UniRef50_C6V5J7 Single-stranded-DNA-specific exonuclease RecJ n=... 502 e-140 UniRef50_P73518 Single-strand-DNA-specific exonuclease; RecJ n=1... 500 e-140 UniRef50_Q6ALW7 Related to single-strand DNA-specific exonucleas... 499 e-139 UniRef50_C5B4H2 Single-stranded-DNA-specific exonuclease protein... 498 e-139 UniRef50_A7ZG65 Single-stranded-DNA-specific exonuclease RecJ n=... 498 e-139 UniRef50_D1C3K1 Single-stranded-DNA-specific exonuclease RecJ n=... 498 e-139 UniRef50_A8SRX9 Putative uncharacterized protein n=2 Tax=Clostri... 498 e-139 UniRef50_Q6MKZ4 Single-strand DNA-specific exonuclease n=1 Tax=B... 497 e-139 UniRef50_B9L1D5 Single-stranded-DNA-specific exonuclease RecJ n=... 497 e-139 UniRef50_B2V9Q3 Single-stranded-DNA-specific exonuclease RecJ n=... 495 e-138 UniRef50_D0EM60 Single-stranded-DNA-specific exonuclease n=3 Tax... 495 e-138 UniRef50_A8EWZ8 Single-stranded DNA-specific exonuclease n=1 Tax... 494 e-138 UniRef50_A9BAH9 Single-stranded DNA-specific exonuclease n=1 Tax... 494 e-138 UniRef50_C2D7P8 Putative uncharacterized protein n=1 Tax=Atopobi... 492 e-137 UniRef50_B5ZFU4 Single-stranded-DNA-specific exonuclease RecJ n=... 492 e-137 UniRef50_Q253D9 Mg-dependent 5'-3' ssDNA-specific exonuclease n=... 490 e-137 UniRef50_C7H0U6 Single-stranded-DNA-specific exonuclease RecJ n=... 490 e-137 UniRef50_D1AL25 Single-stranded-DNA-specific exonuclease RecJ n=... 489 e-136 UniRef50_A5VFK4 Single-stranded-DNA-specific exonuclease RecJ n=... 488 e-136 UniRef50_A5FY25 Single-stranded-DNA-specific exonuclease RecJ n=... 488 e-136 UniRef50_B1XPL2 Single-strand-DNA-specific exonuclease n=3 Tax=C... 487 e-136 UniRef50_A2C286 DHH family:DHHA1 domain:Single-stranded-DNA-spec... 487 e-136 UniRef50_Q7VBV8 Single-stranded DNA-specific exonuclease n=1 Tax... 485 e-135 UniRef50_A6G9W0 Single-stranded-DNA-specific exonuclease RecJ n=... 485 e-135 UniRef50_B2J6M4 Single-stranded-DNA-specific exonuclease RecJ n=... 484 e-135 UniRef50_UPI0001C38E3E exonuclease RecJ n=1 Tax=Arthrospira plat... 483 e-135 UniRef50_A3VNM8 Single-stranded-DNA-specific exonuclease RecJ n=... 483 e-134 UniRef50_Q7MAI2 PUTATIVE SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEAS... 483 e-134 UniRef50_Q1IXZ0 Single-stranded-DNA-specific exonuclease RecJ n=... 482 e-134 UniRef50_B8H563 Single-stranded-DNA-specific exonuclease recJ n=... 482 e-134 UniRef50_Q30NS6 Exonuclease RecJ n=3 Tax=Epsilonproteobacteria R... 481 e-134 UniRef50_B5W1F3 Single-stranded-DNA-specific exonuclease RecJ (F... 480 e-134 UniRef50_B5YFK1 Single-stranded-DNA-specific exonuclease RecJ n=... 480 e-134 UniRef50_D0GIS6 Single-stranded-DNA-specific exonuclease RecJ n=... 478 e-133 UniRef50_A1U815 Phosphoesterase, RecJ domain protein n=1 Tax=Mar... 478 e-133 UniRef50_C3WCG5 Single-stranded-DNA-specific exonuclease recJ n=... 476 e-133 UniRef50_B9ZQ66 Phosphoesterase RecJ domain protein n=1 Tax=Thio... 474 e-132 UniRef50_A6DSV4 Single-stranded-DNA-specific exonuclease RecJ n=... 474 e-132 UniRef50_B9L7S0 Single-stranded-DNA-specific exonuclease RecJ n=... 473 e-132 UniRef50_B7JRF0 Single-stranded-DNA-specific exonuclease RecJ n=... 472 e-131 Sequences not found previously or not previously below threshold: >UniRef50_P28355 Single-stranded-DNA-specific exonuclease recJ n=222 Tax=cellular organisms RepID=RECJ_SALTY Length = 577 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 529/577 (91%), Positives = 555/577 (96%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA 60 MKQQ QLRRRE DETA+LPA+LPPLLRRLYASRGVRSA+ELERSVKGMLPWQQLSG++ A Sbjct: 1 MKQQRQLRRREADETAELPADLPPLLRRLYASRGVRSARELERSVKGMLPWQQLSGIDNA 60 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 VEILYNAFREGTRIIVVGDFDADGATSTALSVL MR+LGC NI YLVPNRFEDGYGLSPE Sbjct: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPE 120 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 VVDQA ARGAQLIVTVDNGISSHAGV HA++LGIPVIVTDHHLPGDTLP AEAIINPNLR Sbjct: 121 VVDQAKARGAQLIVTVDNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLR 180 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 DC FPSKSLAGVGVAFYLMLALRTFLRD+GWFDERNIA PNLAELLDLVALGTVADVVPL Sbjct: 181 DCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPL 240 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 DANNRILTWQG+SRIRAGKCRPGIKALLE++NRD Q+LAASDLGFALGPRLNAAGRLDDM Sbjct: 241 DANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDM 300 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 SVGVALLLCDN+GEARVLA+ELDALNQTRKEIEQGMQ EAL LCEKLERS +TLPGGLAM Sbjct: 301 SVGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAM 360 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP Sbjct: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 +M+KFGGHAMAAGLSLEE KF+ FQQRFGELVTEWLDP+LLQGEV+SDGPLS AEM+ME Sbjct: 421 DLMIKFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSME 480 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA 540 VAQLLRDAGPWGQMFPEPLFDG FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN+DT Sbjct: 481 VAQLLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTT 540 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 WPDNGVREV+LAYKLDINEFRGNRSLQIIID+IWP+ Sbjct: 541 CWPDNGVREVELAYKLDINEFRGNRSLQIIIDDIWPL 577 >UniRef50_Q2NRF9 Single-stranded-DNA-specific exonuclease n=4 Tax=Gammaproteobacteria RepID=Q2NRF9_SODGM Length = 578 Score = 675 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 411/578 (71%), Positives = 489/578 (84%), Gaps = 1/578 (0%) Query: 1 MKQQIQLRRREVDETADL-PAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEK 59 M +LRRR + ++A L A++PPLL+RLY RGV + ELER V+G+L + L+G+E+ Sbjct: 1 MNMTTELRRRPLSDSAVLAEADIPPLLKRLYVQRGVCAVGELERGVRGLLAYHTLTGIEQ 60 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 AV++L A + RI+VVGDFDADGATSTAL+VLA+R +G ID+LVPNRFEDGYGLSP Sbjct: 61 AVDLLIRALADQRRIMVVGDFDADGATSTALTVLALRQMGAQTIDFLVPNRFEDGYGLSP 120 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 EVV+QA ARGAQLI+TVDNGISSHAGV A GIPV++TDHHLPGDTLPAAEAI+NPNL Sbjct: 121 EVVEQAAARGAQLILTVDNGISSHAGVTLAHEKGIPVLITDHHLPGDTLPAAEAIVNPNL 180 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 RDC F SKSLAGVGVAFYLMLALR L D GWF +R IA P LAELLDLVALGTVADVVP Sbjct: 181 RDCTFASKSLAGVGVAFYLMLALRARLNDSGWFTQRGIAAPKLAELLDLVALGTVADVVP 240 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 LDANNRIL QG+SRIRAG+CRPGI+AL EVANRD +L ASDLGFALGPRLNAAGRLDD Sbjct: 241 LDANNRILVHQGLSRIRAGRCRPGIRALAEVANRDITRLCASDLGFALGPRLNAAGRLDD 300 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 MSVGVALLL +++ +AR+LA ELDALNQTR+EIE GM+ EAL LC+ + R +P GLA Sbjct: 301 MSVGVALLLSEDLPQARMLAAELDALNQTRREIEHGMEAEALALCQSMARDEQAMPFGLA 360 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 +YH +WHQGVVGILASRIKERFHRPVIAFAPAG+G LKGSGRS+ GLHMRD LERLDTL+ Sbjct: 361 IYHEQWHQGVVGILASRIKERFHRPVIAFAPAGEGVLKGSGRSVAGLHMRDLLERLDTLH 420 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 PGM+LKFGGHAMAAGL+LE +F+ F+QRF ELV EWLDP++L+G + SDG L+ E+++ Sbjct: 421 PGMILKFGGHAMAAGLTLEHAQFERFRQRFAELVDEWLDPAMLEGVIWSDGELAGQELSL 480 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT 539 A+LLRD GPWGQ FP+PLFDG FR+L QRLVGE+HLK+++EPV GGP+LDGIAFN+D+ Sbjct: 481 TTAELLRDGGPWGQGFPDPLFDGRFRVLNQRLVGEKHLKLLLEPVAGGPMLDGIAFNIDS 540 Query: 540 ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 LWPDN V V+LAY+L++NEFRGNRSLQ++I +IWP+ Sbjct: 541 RLWPDNSVHTVELAYRLEVNEFRGNRSLQLLIQHIWPL 578 >UniRef50_P39693 Single-stranded-DNA-specific exonuclease recJ n=116 Tax=Gammaproteobacteria RepID=RECJ_DICD3 Length = 575 Score = 668 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 431/577 (74%), Positives = 497/577 (86%), Gaps = 2/577 (0%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA 60 M QLRRR ET +LP LP LLRRLYA RGVR QELERS++G+L ++ L G+ +A Sbjct: 1 MNVVTQLRRRPTAET-ELPDSLPALLRRLYAQRGVRQMQELERSLRGLLDYRLLGGITQA 59 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 VE+L A + RI++VGDFDAD ATSTAL+VLA+RS+ + YLVPNRFEDGYGLSPE Sbjct: 60 VEVLRQALADNRRIVIVGDFDADRATSTALTVLALRSMAAREVQYLVPNRFEDGYGLSPE 119 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 VV QA A+GA+LIVTVDNGISSHAGV+ A GI V+VTDHHLPG+TLPAAEA+INPNL Sbjct: 120 VVAQAPAKGAELIVTVDNGISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLS 179 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 DC FPSK+LAGVGVAFYLM+ALR LR+ GWF ER +A PNLAELLDLVALGTVADVVPL Sbjct: 180 DCAFPSKALAGVGVAFYLMMALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPL 239 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 DANNRIL QG+SRIRAGKCRPGI+ALLEV+NRDA +L ASDLGFALGPRLNAAGRLDDM Sbjct: 240 DANNRILISQGLSRIRAGKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDM 299 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 SVGV LLLC +I +AR+LA++LDALNQ+R+EIE GMQ+EAL LCE+LER+RDTLP GLAM Sbjct: 300 SVGVELLLCKHIVQARMLASDLDALNQSRREIEAGMQVEALHLCEQLERTRDTLPLGLAM 359 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 YHP+WHQGVVGILASRIKERFHRPVIAFAPAGDG LKGSGRSI GLH+ ALERLDT +P Sbjct: 360 YHPQWHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSIAGLHLH-ALERLDTCHP 418 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 G+MLKFGGHAMAAGLSL ED+F F+QRF +LV EWLD S L+G V SDG L+ ++T+ Sbjct: 419 GLMLKFGGHAMAAGLSLVEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELASPDVTLG 478 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA 540 A++LR+AGPWGQ FPEP FDG FRLLQQRLVGERHLKVMVEP+GGGPLLDGIAFNVDT Sbjct: 479 TAEMLREAGPWGQAFPEPTFDGRFRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTL 538 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 LWPD+ VREV+LAYKLD+NEFRG RS+Q++I+++WP+ Sbjct: 539 LWPDSSVREVELAYKLDVNEFRGKRSVQLLIEHLWPL 575 >UniRef50_A4J2G7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2G7_DESRM Length = 885 Score = 659 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 204/579 (35%), Positives = 311/579 (53%), Gaps = 23/579 (3%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGV 57 K +++ + + + + +L +RG+ + + + M + + Sbjct: 6 KWRVKAPNPALQQILSFELGISKIFAQLLINRGIYTVDQARAFLGSELDKMFSPWLMQDM 65 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 +KAVE + A +G +I+V GD+D DG T T + VLA+R LGC DY +P+R E+GYGL Sbjct: 66 KKAVERILGARDKGEQILVYGDYDVDGITGTTVLVLALRRLGC-KADYFIPHRLEEGYGL 124 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + +++A RG L+VTVD GIS VE A++LG+ V++TDHH P LPAA AI++P Sbjct: 125 NKVALERAVERGVSLVVTVDCGISGAEEVEVAKALGLEVVITDHHEPPVQLPAAVAILDP 184 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 C++P K LAGVGVA L+ L F++ ++ N E LDLV LGTVAD+ Sbjct: 185 KRSGCSYPFKELAGVGVALKLIQGL---------FEQAGLSQRNWEEYLDLVCLGTVADI 235 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 VPL NRIL G+ +I K RPG++AL++V+ A+ L +LGF L PRLNAAGR+ Sbjct: 236 VPLQGENRILVKHGLPQISNSK-RPGLQALIKVSGIKAEVLGTRELGFGLAPRLNAAGRM 294 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 D +GV LLL +++ A +A ELD N R+++E + EAL L E S + Sbjct: 295 GDAGLGVELLLAEDLLVAEEMAEELDRGNHERQQVESKVLSEALALLET--DSEISQGKV 352 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 L + WH GV+GI+ASR+ +RF+RPV + +G KGS RSI G ++ A+ Sbjct: 353 LVLASENWHPGVIGIVASRLVDRFYRPVFMISL-EEGKGKGSARSIPGFNLYQAMVSCQD 411 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 + +FGGHAMAAG S+ DK F++ + E+L L + D ++ ++ Sbjct: 412 ----HLEQFGGHAMAAGFSIHVDKINEFRKTINAMAEEFLSEEHLTPNLDLDALINLNDL 467 Query: 478 TMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN 536 +M+ Q L P G P P+ ++ R VG+ + + +LDGI FN Sbjct: 468 SMDTVQELNQLSPLGHCNPGPILGCCQATVINCREVGKNGGHLKMRVREDHTVLDGIGFN 527 Query: 537 VDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + V +A+ IN + G S+Q+ + + Sbjct: 528 LASYSEMLAANDTVDMAFIPSINVWNGRTSVQLEVKELK 566 >UniRef50_O32044 Single-stranded-DNA-specific exonuclease recJ n=101 Tax=Bacillales RepID=RECJ_BACSU Length = 786 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 174/579 (30%), Positives = 291/579 (50%), Gaps = 31/579 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSG 56 M+ +IQ ++ ++ + PL+ L RG +A+ + ++ G Sbjct: 6 MRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFYDPFEMKG 65 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++A + + A + +I++ GD+DADG TST++ + ++ L + +D+ +P+RF++GYG Sbjct: 66 MKEAADRIKQAISQQEKIMIYGDYDADGVTSTSVMLHTLQKL-SAQVDFYIPDRFKEGYG 124 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + + RG LI+TVD GI++ + A+ LG+ VI+TDHH PG LP AI++ Sbjct: 125 PNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKELGLDVIITDHHEPGPELPDVRAIVH 184 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P C +P K LAGVGVAF L AL L ELLDL A+GT+AD Sbjct: 185 PKQPGCTYPFKELAGVGVAFKLAHALLGELP---------------DELLDLAAIGTIAD 229 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +VPL NR++ G+ R+R R G+K L++++ D + +GF L PRLNA GR Sbjct: 230 LVPLHDENRLIATLGLERLRRT-NRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGR 288 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 ++ V LL+ ++ EA LA E+D LN+ R+++ M EA+ + E+ + Sbjct: 289 IEQADPAVHLLMSEDSFEAEELAAEIDQLNKERQKMVSKMTDEAIEMVEQQGLDQ----T 344 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERL 415 + + W+ GVVGI+AS++ +RF+RP I + G KGS RSI+G ++ ++L Sbjct: 345 AIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFESLSEC 404 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + P FGGH MAAG++L+ + + R E+ L D Sbjct: 405 RDILP----HFGGHPMAAGMTLKAEDVPDLRSRLNEIADNTLTEEDFIPVQEVDLVCGVE 460 Query: 476 EMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 ++T+E + P+G + P+P + + L R +G V + LD + Sbjct: 461 DITVESIAEMNMLSPFGMLNPKPHVLVENAVLEDVRKIGANKTHVKMTIRNESSQLDCVG 520 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 FN + + ++ INE+ + Q++I + Sbjct: 521 FNKGELQEGIVPGSRISIVGEMSINEWNNRKKPQLMIKD 559 >UniRef50_UPI0001694BF0 YrvE n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694BF0 Length = 813 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 188/584 (32%), Positives = 303/584 (51%), Gaps = 34/584 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGV 57 + Q V + L L RL A RG+ + + E + + + Sbjct: 7 RWQTGCAESSVVQKLAEAHHLDTLTARLLALRGITTPEAAESFLHSRQDGFHDPFLMKDM 66 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 +KAV+ + A I + GD+DADG TST+L + +R + + DY +P+R +GYGL Sbjct: 67 KKAVDRIRLAVEHKEFIRIYGDYDADGVTSTSLVMFLLRKI-KARFDYYIPHRVREGYGL 125 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + + V++A G LI+TVD G+S+ V + + LG+ VIVTDHH P D P A++NP Sbjct: 126 NRQAVEKAAEDGVDLIITVDTGVSAVEQVTYIQELGMDVIVTDHHEPPDISPQPLALVNP 185 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 DC +P K LAGVGVAF L AL + + ELL+LVA+GTVAD+ Sbjct: 186 KQADCPYPFKHLAGVGVAFKLAHALLDRVPE---------------ELLELVAIGTVADL 230 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 +P NR + G+ R++ PGI+ALL++A ++Q++ ++ LGFA+GPRLNA+GRL Sbjct: 231 MPFHGENRTIVKMGLKRMQQS-AFPGIRALLKIAGIESQQVTSTHLGFAVGPRLNASGRL 289 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 + V LL+ + G A LA LD LNQ R+ I + + EAL + + + +T Sbjct: 290 GSANNSVELLITGDSGRANELAQLLDELNQERQRIVREINEEALAIAAEQVQKGNTF--- 346 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLD 416 L + P+W++GV+GI+AS+I E ++RP I F+ + G KGS RSI+ M + L Sbjct: 347 LVVAKPDWNEGVIGIVASKIVETYYRPTIVFSMNDESGLAKGSARSIESFDMYENLTACR 406 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 L + FGGH AAG++++++ ++ L P L + +D + Sbjct: 407 EL----LEHFGGHRSAAGMTIKQEHIDALHRQLDHQAKALLGPDDLVPVIRADAACHLKD 462 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPL--LD 531 + + + L+ P+G P P F + RL RL+G ++H+K+++ G ++ Sbjct: 463 VPLGWIEQLQKLEPFGASNPSPQFIVENLRLTDLRLLGRDKKHMKLVLSESQGESTVQIE 522 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + F + + + +L INE+ G R Q+ + ++ Sbjct: 523 ALGFGKAHLSELISPTARLDVLGELGINEWNGIRRPQLTLKDLR 566 >UniRef50_A6NR30 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NR30_9BACE Length = 689 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 200/584 (34%), Positives = 298/584 (51%), Gaps = 30/584 (5%) Query: 1 MKQQ-IQLRRREVDETADLPA-ELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 MK + LR A + A +PPL + +RG+ + ++ + ++ + + Sbjct: 1 MKYRQWNLRAPSPAAQAAMEADGVPPLAASVLCARGLDTVEKAKDFLRSDEDLLWDPFLM 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +++AV + A + I V GD+D DG TST L +RS G + + +P+R E+G Sbjct: 61 KDMDRAVSRIAAALDQNEHIAVYGDYDVDGITSTCLLTDYLRSRG-AKVTPYIPDRMEEG 119 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YGLS V HA+G LI+TVD GI++ A E A SLGI V++TDHH D +P A A+ Sbjct: 120 YGLSCSAVSALHAKGVSLIITVDCGITAVAEAEFAASLGIDVVITDHHECKDRIPTAAAV 179 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 ++P+ RDC +P K LAGVGVA L+LAL + L DL A+GTV Sbjct: 180 VDPHRRDCGYPFKHLAGVGVALKLVLALGDKTEESAL----------LRRYADLAAVGTV 229 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 ADV+ + NR + G++ ++ RPG++ALL A + L + +G+ L PR+NA+ Sbjct: 230 ADVMQVVGENRTIIRMGLAALKNT-VRPGLRALLHEAGLTERPLTSVSIGYTLAPRINAS 288 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ + LLL + LA EL ALN+ R+ +E + E + + + + Sbjct: 289 GRMGCAGLAAELLLTSDPARGEALARELCALNRERQAVELDIYEECVAMADAMRPEDR-- 346 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 L + WHQGVVGI+ASR+ E++ P DG KGS RS G ++ ALE+ Sbjct: 347 -PALVLAREGWHQGVVGIVASRLSEKYSCPTFMICL-QDGKGKGSCRSFGGFNLFAALEQ 404 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 L G FGGH +AAG ++ E+ F++R ELV + ++ + D P Sbjct: 405 CRDLLEG----FGGHELAAGFTILEEHIPAFRERMLELVRSSTGGAAMEAALEVDAEADP 460 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLV-GERHLKVMVEPVGGGPLLDG 532 A +T E L P+G P+P+F + V G RHLK+ V GG D Sbjct: 461 ALLTQEGVLSLDLLEPYGTGNPKPVFSMSGCTVTNASEVGGGRHLKLKV--TKGGRSFDA 518 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 I F+V A V LA+ INEFRG RS+Q+ + ++ P Sbjct: 519 IFFSVSLAEAGLAPGDRVDLAFSPQINEFRGWRSVQLQLIDLRP 562 >UniRef50_C6D7X7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7X7_PAESJ Length = 677 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 194/582 (33%), Positives = 290/582 (49%), Gaps = 31/582 (5%) Query: 5 IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKA 60 + E +PPL+ +L RG + + E ++G + L G+ +A Sbjct: 13 WNKEDEQQAEQLSAQLGIPPLVAKLLVQRGYKDKEAAETFLRGGEDRLHDPYLLIGMTEA 72 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 V + A G I + GD+DADG +ST+L + R LG + DY +P+R +GYGL+ Sbjct: 73 VARIRQAADNGEFIRIYGDYDADGVSSTSLLIHVFRELGYT-FDYYIPHRASEGYGLNTG 131 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 +D A A G +LIVTVD GIS++ VE+A+SLGI ++VTDHH P + +P A A++NP Sbjct: 132 AIDIAAADGVRLIVTVDTGISAYEQVEYAKSLGIDIVVTDHHEPPERIPDAVAVVNPKRE 191 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 DC +P K LAGVGVAF L AL E D+V+LGT+AD++PL Sbjct: 192 DCPYPFKGLAGVGVAFKLATALMGRAP---------------MEWTDIVSLGTIADIMPL 236 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 NR+L G++R++ G +AL E + ++ ++ + F + PR+NAAGRLD Sbjct: 237 TDENRVLVRAGLARLQNT-DNTGFRALSEACGIELDQVTSTTVAFGMAPRINAAGRLDHA 295 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTL----CEKLERSRDTLPG 356 V LL + EA A+ LD LN+ R+ I G+ EA + + P Sbjct: 296 KRAVELLTTGDYDEAIRAASSLDVLNKERQRIVDGIVKEAELQWQGKRDAARAAGRPEPA 355 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERL 415 + + W+ GV+GI+AS+I ER+++PVI D G KGS RSI+G + AL Sbjct: 356 VIVLAGEGWNVGVIGIVASKILERYYKPVIVLGIDPDSGMCKGSARSIEGYDLHAALTEC 415 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 D L + +GGH AAG+SL D+ F+++ GEL EWL + D S Sbjct: 416 DEL----LDHYGGHQAAAGMSLRRDQLPAFEEKLGELAMEWLTEQDWIPKTAIDLVCSVG 471 Query: 476 EMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 + ++ L P+G P P L L R +G+ + + G LD + Sbjct: 472 DASVHTIGQLALLEPFGAGNPSPRLLLQSAELSDYRTMGKDARHLKLSLRSGRTSLDAVG 531 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 F + V L +L INE+ G R Q+ I +++ Sbjct: 532 FGLGELSNQLQSGLPVDLVGELSINEWNGQRKAQLHIHDLYF 573 >UniRef50_C0ZAP8 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAP8_BREBN Length = 782 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 200/581 (34%), Positives = 289/581 (49%), Gaps = 33/581 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGV 57 + ++ ++ + +L PL+ +L RG+ ++Q+ + + L G+ Sbjct: 7 RWKLATYDEQLAASIAADCQLTPLVSKLLVIRGIDTSQKARDFLQAGPELFHDPFLLDGM 66 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 E++V + A + I + GD+DADG +ST+L V +R LG + DY +PNRF +GYGL Sbjct: 67 EQSVHRIQQAIQRQEPICIYGDYDADGVSSTSLMVHLLRQLG-AVFDYYIPNRFTEGYGL 125 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + + H G +LI+TVD GIS+ V +A LG+ VIVTDHH P +P A A+INP Sbjct: 126 HKDALAHLHQSGYKLIITVDTGISAVEQVAYANQLGLDVIVTDHHEPPAVIPEAFAVINP 185 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 C++P LAGVGVAF + AL L DL ALGT+AD+ Sbjct: 186 KKPGCSYPFDMLAGVGVAFKVGHALLKEPPLH---------------LADLAALGTIADL 230 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 VPL NRIL G+ R+ + G++AL+ V +L+A +GFALGPRLNA+GRL Sbjct: 231 VPLVDENRILARAGLKRLNHTR-NLGLQALIRVCGLADTELSAGHVGFALGPRLNASGRL 289 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 + V LL ++ EA A LD LN+ R+EI M EA+ + +L Sbjct: 290 ETAESAVKLLTTSDMDEAEKCAQALDDLNRERQEIVAAMTEEAVQMVNELYPPDQN--NV 347 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLD 416 L + W+ GVVGI+ASR+ E F+RP I + GT KGS RSI G M + L Sbjct: 348 LVLAKEGWNVGVVGIVASRLVELFYRPTIVLGIDPEKGTAKGSARSIAGFDMYEGLTACK 407 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 P +GGH MAAG++L + L +Q+ EL EWL D +S E Sbjct: 408 EWLP----HYGGHTMAAGMTLPVENLDLLRQKLNELAGEWLSSEDFTPMTKVDVAMSMEE 463 Query: 477 MTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGI 533 +++ A+ L P+G P P + R +G HLK + G LD I Sbjct: 464 ISLTAAEQLEQLAPYGMGNPTPLVLLEEVETQGMRTIGRDDNHLKCTLNKA--GTSLDAI 521 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 FN + +L +NE+ GNR Q+ I ++ Sbjct: 522 GFNWAHVTKRVTPKARFHVLGELSVNEWNGNRKPQLTIRDL 562 >UniRef50_A6TQN7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TQN7_ALKMQ Length = 841 Score = 636 bits (1642), Expect = 0.0, Method: Composition-based stats. Identities = 190/585 (32%), Positives = 304/585 (51%), Gaps = 27/585 (4%) Query: 1 MKQQ-IQLRRREVDET--ADLPAELPPLLRRLYASRGVRSAQELERS----VKGMLPWQQ 53 MK++ + E + P ++ +R V +E +R ++ + Sbjct: 1 MKRKIWTYKDYNEIEIKKMSEELGVLPFTAQILTNRKVIDTREAKRFIDSSLEQLHDPFL 60 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L ++KAV+ + A ++ +I + GD+D DG +ST++ + +++ S +DY +P+R ++ Sbjct: 61 LKDMKKAVDRIQEAIQKNEKIWIYGDYDVDGVSSTSIMLQYFKTIDFS-VDYYIPDRVQE 119 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG++ E + +RG LI+TVD GI+S + A SL I +I+TDHH +P A A Sbjct: 120 GYGINQEAIQLIKSRGGNLIITVDCGITSFEEIALANSLSIDMIITDHHECQGAVPEAYA 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 IINP DC++P S+ G G+A L+ AL + + +D+VA+ T Sbjct: 180 IINPKQHDCSYPFDSICGCGLALKLIQAL----------TPKEEFKSTIYLYIDIVAIAT 229 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 VAD+VPL NRI G+ + K G++ALLEV +KL A +GF+LGPR+NA Sbjct: 230 VADIVPLVDENRIFVKNGLQYMPDTK-NLGVQALLEVCKLKDRKLNAGHIGFSLGPRINA 288 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGR+ GV LL + E + LA+ L+ NQ R+EIE + EA+ + E + Sbjct: 289 AGRIGSADSGVKLLTSSDPAEVQQLAHFLNEENQNRQEIEVKILDEAINMIESSGQFN-- 346 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 + L + WH GV+GI+ASRI ER+H+PVI A GD KGS RSI L++ +A+ Sbjct: 347 IDKVLVLAKEGWHHGVIGIVASRIVERYHKPVIILAIEGD-KAKGSARSIPKLNLFEAMN 405 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + L+ LK GGH AAGL+L+ + + F+ + ++V + L P ++ DG LS Sbjct: 406 QCKDLF----LKIGGHEQAAGLTLKSENIEAFRMKINDIVNQTLSPEDFIAQIHCDGLLS 461 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 + + L + P+G P P F G F ++ R VG + ++ +D Sbjct: 462 LDVVEDSLIDELGNLEPYGMGNPSPKFIGYDFTIVDIRAVGVDGKHLKLKLGSKSKQVDA 521 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 I FN ++ L Y + NEFRG +++Q+ I +I + Sbjct: 522 IGFNFGDYSDHIEQGDKIHLVYTPEFNEFRGQKNIQLQIKDIKTV 566 >UniRef50_A3DF49 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Clostridium thermocellum RepID=A3DF49_CLOTH Length = 827 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 187/585 (31%), Positives = 303/585 (51%), Gaps = 28/585 (4%) Query: 1 MKQQ--IQLRR--REVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQ 52 MKQ+ + E E A + LL ++ SRGV ++ + + Sbjct: 1 MKQRRLWSMNDLSDEKVEKLSKKAGISKLLAGIFLSRGVDDPDYIKDFLNPSLDKLHDPF 60 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 +L +EKAV+ + A R+ +I++ GD+D DG TST++ R +++ Y +P+R Sbjct: 61 ELRDMEKAVDRIVKALRQNEKILIYGDYDVDGITSTSILYDFFRR-QNADVCYYIPDRLN 119 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 +GYG+S ++ L++TVD GI++ V++ I +I+TDHH +++P A Sbjct: 120 EGYGISMAAAEKMPEMDVDLVITVDCGITAFEEVKYITDNNIDIIITDHHECRESVPDAL 179 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A++NP+ DC +P K LAGVGVA+ L+ AL + G+ + LDLVALG Sbjct: 180 AVVNPHRFDCAYPFKELAGVGVAYKLLEALSKKMNIPGF----------ERQYLDLVALG 229 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 292 TVADVVPL NRI+ G+ I G+++L++VA + +++ +GF L PR+N Sbjct: 230 TVADVVPLLGENRIIVKYGLPMIEKT-SNVGLRSLIKVAGIENKEINTFLVGFVLAPRIN 288 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 AAGR+ D S V LL DN EA +A ELD N RK+ E + EA+ + E Sbjct: 289 AAGRIGDASRAVRLLTTDNEEEALEIAKELDEQNIFRKQNELEIMEEAVNIIETG--IDL 346 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 + + WH GV+GI++S+I ER++RP + + G+G KGS RSI+G ++ +AL Sbjct: 347 QREKVIVVAGERWHHGVIGIVSSKITERYYRPSVLISVDGEG-AKGSARSIEGFNLFEAL 405 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 ++ K+GGH AAGL+L+ + F++ E LD L + D + Sbjct: 406 VHC----GKVLEKYGGHEQAAGLALKPENIDEFRRMINEYADSVLDEDDLVPRMKIDVRI 461 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLD 531 + +MT+E + L+ P+G+ P P+F + ++ + R VG+ + G L+D Sbjct: 462 TKEDMTLENCKELKLLEPFGESNPPPVFRYDNLKVHEIRPVGQDSRHAKIRFDDNGTLID 521 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 I FN V + ++IN + G ++Q+ I +I P Sbjct: 522 AICFNGGGLTDCYELSDIVDVVCSMEINLWNGRENVQLNIKDIRP 566 >UniRef50_B4RXN3 Single-stranded-DNA-specific exonuclease RecJ n=12 Tax=Gammaproteobacteria RepID=B4RXN3_ALTMD Length = 573 Score = 634 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 303/558 (54%), Positives = 409/558 (73%), Gaps = 1/558 (0%) Query: 17 DLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIV 76 L ++L P++ R+Y R + + +LE ++G+ + L G+ +A +IL A + RII+ Sbjct: 14 SLSSDLHPVIDRIYRGRNIANIDDLENGLRGLTHFNALKGMPEAAQILATAIEQNKRIII 73 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTV 136 VGDFDADGATST++ +LA+R++G N+D+LVPNRF+ GYGLS +VD+A +GA +IVTV Sbjct: 74 VGDFDADGATSTSVCILALRAMGFDNVDFLVPNRFDFGYGLSVPIVDEAAKQGADIIVTV 133 Query: 137 DNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 DNGIS GV HA+ LGI V+VTDHHLPGD LP A+AI+NPN C FPSK+LAGVGVAF Sbjct: 134 DNGISCIDGVTHAKGLGIQVVVTDHHLPGDVLPPADAIVNPNQPGCEFPSKNLAGVGVAF 193 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 Y+MLAL+ L+ QG+F++ IA PNLA LLD+VA+GTVADVV LD NNRIL QG+ RIR Sbjct: 194 YIMLALKAKLQQQGYFEKAGIAPPNLASLLDIVAVGTVADVVVLDKNNRILVHQGLQRIR 253 Query: 257 AGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEAR 316 AG+CRPGIKAL+EVANRD L ++DLGF +GPRLNAAGRLDDMS G+A LL D+ +AR Sbjct: 254 AGQCRPGIKALVEVANRDCAHLTSTDLGFVVGPRLNAAGRLDDMSQGIACLLEDDTIQAR 313 Query: 317 VLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASR 376 ++A ELDALN+ R+EIE GM+ +A E++ +P L +Y ++HQGV+GI+A R Sbjct: 314 MIAAELDALNKERREIETGMKAQAEMALEQMVLDEGDMPSALVVYREDFHQGVIGIVAGR 373 Query: 377 IKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 +KE++ +PVIAFA D +KGS RSI G+H+RD L+ ++T YPG++ KFGGHAMAAGLS Sbjct: 374 LKEKYLKPVIAFAHQDDLIIKGSARSIPGVHIRDVLDEVNTRYPGVIEKFGGHAMAAGLS 433 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 L K + F++ F ++ + L ++SDG LS +E+ + A LLR AGP+GQ F Sbjct: 434 LPVAKLRDFERAFIDIAGKHLAKLDGNHALLSDGDLSASELCLPFAHLLRQAGPFGQGFE 493 Query: 497 EPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKL 556 PLFDG F LL QRLVG++HLK++++ G +D IAFNVD WP+ V+ V +AY+L Sbjct: 494 SPLFDGEFSLLDQRLVGQKHLKMVLK-GDGANEVDAIAFNVDLKAWPNAMVKRVHVAYRL 552 Query: 557 DINEFRGNRSLQIIIDNI 574 DIN FRG ++Q+I++ I Sbjct: 553 DINVFRGQETVQLIVEQI 570 >UniRef50_Q5QYV7 Single-stranded DNA-specific exonuclease n=1 Tax=Idiomarina loihiensis RepID=Q5QYV7_IDILO Length = 570 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 300/572 (52%), Positives = 394/572 (68%), Gaps = 7/572 (1%) Query: 6 QLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILY 65 ++RR ++ + LP ++PPLLR++YA RGVR A EL G+L + L + KAVE+L Sbjct: 5 EIRRYQLVDDDFLPQQMPPLLRQIYARRGVRRADELSLKASGLLHFSSLRDIGKAVELLQ 64 Query: 66 NAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA 125 NA + ++ + GDFDADGATS+AL V A+++ G + Y VPNR DGYGLS +V+Q Sbjct: 65 NALKNQAKVCICGDFDADGATSSALMVSALQAFGLQQVGYRVPNRMTDGYGLSVAMVEQL 124 Query: 126 HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFP 185 QLIVTVDNGI++H + AR GI V+VTDHHLP + LP A AI+NPN C F Sbjct: 125 AVENVQLIVTVDNGIAAHDAIVLAREKGIQVLVTDHHLPPEELPPANAIVNPNQHGCEFS 184 Query: 186 SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNR 245 SK+LAGVGVAFY++LALR+ LR+QG +PNLA+ LDLVALGTVADVVPLD NNR Sbjct: 185 SKNLAGVGVAFYVLLALRSALREQGV-----EPLPNLADWLDLVALGTVADVVPLDYNNR 239 Query: 246 ILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVA 305 +L QG++RIR G RPGIKALLEVANRDA +LAASDLGFALGPR+NAAGRLDD+ +G+ Sbjct: 240 VLVQQGIARIRKGMSRPGIKALLEVANRDASQLAASDLGFALGPRINAAGRLDDIGLGIE 299 Query: 306 LLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEW 365 LL A+ LA +L+ LNQ RK IE M+ A + KL + +P + +Y P+W Sbjct: 300 CLLAG-ETRAQQLAQQLNDLNQQRKSIETEMREHAESAVAKLCFDQGQVPDLVTLYQPDW 358 Query: 366 HQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLK 425 H GV+GI+A R+KE+ +RPVIA A D LKGS RS+ GLHMRD LER+ +L PG+M + Sbjct: 359 HAGVIGIVAGRVKEQVNRPVIALANDDDEFLKGSARSVSGLHMRDLLERVHSLQPGIMER 418 Query: 426 FGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLL 485 FGGHAMAAGL+++++ F + ++ +EWL Q SDG L+ +++++ L Sbjct: 419 FGGHAMAAGLTMKKENLTRFSELAEQVASEWLSEEQKQRVFWSDGELTTTQLSLDSVNTL 478 Query: 486 RDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDN 545 + AGPWGQ FPEP+FDG F L+ QR+VGERHLK++V G LLD IAFNVDT WP Sbjct: 479 QSAGPWGQQFPEPMFDGQFELVDQRIVGERHLKLVVRHPQGE-LLDAIAFNVDTQQWPAR 537 Query: 546 GVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 V+L YK +N FRG ++Q++++ I I Sbjct: 538 QASVVELLYKPQLNHFRGRTNVQLLVEQIRAI 569 >UniRef50_B8CXF2 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXF2_HALOH Length = 814 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 195/581 (33%), Positives = 323/581 (55%), Gaps = 31/581 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSG 56 MK++ Q ++++D + + +L P+L+ + SRG+ E+ R + + + Sbjct: 1 MKKKWQFIKQKLDGSLN---DLEPVLQSILYSRGITDRDEINRFLSCRIQDLHSPFLMKD 57 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + KAV+ + A G +IIV GD+D DG TSTAL L + +DY +PNR ++GYG Sbjct: 58 MGKAVDRILTAIESGEKIIVYGDYDVDGITSTALLFLYFKKRLGYEVDYYLPNRLKEGYG 117 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ E +D+ + L++TVD GIS VE+A G+ VIVTDHH P LP A A+++ Sbjct: 118 LNKEALDKIINKNYDLMLTVDCGISGLEEVEYATRKGLEVIVTDHHQPAKKLPPAIAVLD 177 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P+ +D +P K LAGVGVAF L AL ++ L L+D+V+LG++AD Sbjct: 178 PHRKDDKYPFKYLAGVGVAFKLCQALEKEIKGHEI-------SDFLLRLIDIVSLGSIAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +VPL NRI+ +G+S + G++ L++ + D + L A +G+ + P LNAAGR Sbjct: 231 IVPLLGENRIIVKRGLSELNDT-SNKGLRVLMDKLSLDGKDLNAGHIGYIMAPPLNAAGR 289 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 ++D S+G+ LL D+I +A+ +AN L LN++R+ E+ + +A+ + EK Sbjct: 290 MEDPSLGIELLTTDSIDKAKEIANRLINLNKSRQAEEEEIFEDAVKMIEKTV--DLNKDK 347 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 G+ + P+WH GV+GI+ASR+ E+++RPVI + DG KGS RSI+GL++ AL+ Sbjct: 348 GIVLASPDWHHGVIGIVASRLVEKYYRPVIMISL-EDGIGKGSCRSIEGLNIYKALDFCS 406 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 + +L +GGH AAGL++ ++ + F+ F + V L P L + D L P + Sbjct: 407 S----YLLSYGGHEQAAGLAINKEDIEQFRDTFLDYVDSVLSPEDLIPVLKLDSILKPGQ 462 Query: 477 MTMEVAQLLRDAGPWGQMFPEPL-FDGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGI 533 + + + L+ P+G P+P F + + + R VG +HLK ++ L GI Sbjct: 463 INLNFYKTLKQLEPYGVGNPKPRFFLSNMQFNKLRTVGRDGKHLKFTLDKG-----LKGI 517 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 F+ L ++V LA+ L +N + G +++ + ++ Sbjct: 518 GFDFGDKLIEFK-NKKVDLAFYLTLNTWNGAEEVELQLLDV 557 >UniRef50_Q183I1 Putative single-stranded-DNA-specific exonuclease n=8 Tax=Clostridium RepID=Q183I1_CLOD6 Length = 816 Score = 631 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 178/583 (30%), Positives = 305/583 (52%), Gaps = 30/583 (5%) Query: 1 MKQQIQLRRREVDET-ADLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLS 55 MK+ I + +++E+ + P + ++ +RG+ + ++ + S+ + + Sbjct: 1 MKKWILKYKGKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLRDPFLMK 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++KAV+ + A + +I + GD+D DG +ST++ L +S+G N+DY +PNR E+GY Sbjct: 61 DMQKAVDRIKLAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGY-NVDYYIPNRLEEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G++ + + +RG LI++VD GI+S + V A LGI VI+TDHH +P+A A+I Sbjct: 120 GINEDAIKLISSRGCDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQSEIPSAFAVI 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP DCN+P SL G GVAF ++ AL + ++ L++V L T+ Sbjct: 180 NPKQEDCNYPFDSLCGCGVAFKMIQAL----------TPKEEFKTSMYNYLEIVTLATIC 229 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL NRI+ G+ ++ GK G++ L++V ++ K+ +S +GFA+GPR+NA+G Sbjct: 230 DIVPLIDENRIIVKNGLKSMKEGK-NIGLRELIKVCGVESDKIGSSHIGFAIGPRINASG 288 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RL +GV L + EA +A+ L+ N R+ IE M EA + + R D Sbjct: 289 RLGYSYLGVELFTTQSQEEAVEIASILEEKNNERQMIEAKMYHEAEEMLKSNSRYND--D 346 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 L + W G++GI+AS++ E++++P I +G GS RSI+G ++ +AL + Sbjct: 347 KVLVLAKEGWQHGIIGIVASKLTEKYYKPTILLGI-ENGEATGSARSIKGFNIFEALIKC 405 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L M KFGGH AAGLSL+ D ++ + L + V + L Sbjct: 406 KDL----MTKFGGHEQAAGLSLDSDNVEILANEINKFADYNLTEDDMIENVNVEFELQEN 461 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLL-QQRLVGER--HLKVMVEPVGGGPLLDG 532 + + + + L P+G P P F +L +++G+ HLK+ +E + Sbjct: 462 VINLNLVEELHKLEPFGLNNPNPRFIVRNYILKDLKVIGKNQQHLKLSIEKEKS---YEC 518 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 I FN+ +V + ++LD N + GNR +Q ++ +I Sbjct: 519 IGFNMSHLKSMYKVGDKVDVLFQLDENNYMGNRKVQFLLKDIR 561 >UniRef50_A8VTW9 Holliday junction DNA helicase RuvB n=2 Tax=Bacillus RepID=A8VTW9_9BACI Length = 785 Score = 630 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 196/584 (33%), Positives = 302/584 (51%), Gaps = 36/584 (6%) Query: 2 KQQIQLRRREVDET--ADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLS 55 K + + D+ L + R + R + +E+ + + +L L Sbjct: 5 KSKWLVPDWSEDQVGELAEATGLSNIAARFFVQRRKTTKEEVMSFLHMDHRSLLDPFLLY 64 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 +++AV+ + A + RI++ GD+DADG TSTA++ L ++ LG + + Y +PNRF +GY Sbjct: 65 DMDRAVDRIRRAIEKQERILIFGDYDADGVTSTAITYLTLKRLG-AEVSYYIPNRFTEGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G + QA LI+TVD GIS E A+ G+ +I+TDHH P LP A A++ Sbjct: 124 GPNEGAFRQAAEESVSLIITVDTGISGVHEAEVAKECGMDLIITDHHEPPPVLPDAFAVV 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP C++P+ +LAG GVAF L AL + + +L DLVA+GT+A Sbjct: 184 NPKQEHCSYPNPNLAGAGVAFKLAHALTGEIPE---------------DLFDLVAIGTIA 228 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+V L+ NR L G+ IR G R G+KALL++A + +L +GF +GPRLNAAG Sbjct: 229 DLVSLEGENRYLAKAGIEAIRQGP-RAGVKALLDIAGAEVSELNEETIGFMIGPRLNAAG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RLD ALL+ +N EA+ LA +D LN+ R+ I + + EA+ E +P Sbjct: 288 RLDSADPAAALLITENPHEAKDLAELIDGLNKERQSIVKEIAEEAIEQVEAQG-----VP 342 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALER 414 + + W+ GV+GI+ASR+ ER++RPVI + + KGS RSI+G M +L Sbjct: 343 SVIIVGAEGWNPGVIGIVASRLVERYYRPVIVLSFDQEKEQAKGSARSIEGFDMFQSLST 402 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + P FGGH MAAGL++ + ++R L E + ++ D P+S Sbjct: 403 CRDILP----HFGGHPMAAGLTMSLSDVEELRERLIRLANESMSDDDWIRKLKVDLPVSI 458 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLD 531 E+T+ + L+ P+G P P + ++ R +G HLK+ V G G LD Sbjct: 459 EEVTLNAIEDLQAMAPYGIGNPAPKVMLEDVGIVSMRRIGATGDHLKLSVNNKGSGIELD 518 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 IAF A + + + L KL INE+ G R Q +++++ Sbjct: 519 AIAFGKGDAADEISKLSPLSLVGKLGINEWNGKRKPQFLVEDMQ 562 >UniRef50_C8VZX5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZX5_DESAS Length = 907 Score = 629 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 190/585 (32%), Positives = 307/585 (52%), Gaps = 29/585 (4%) Query: 1 MKQQ--IQLRRREVDE--TADLPAELPPLLRRLYASRGVRSAQELERS----VKGMLPWQ 52 M++Q ++ ++ + P+L +L +RG+ + ++++ + + Sbjct: 1 MQKQKIWHIKENDLATQSIITKELGVSPILAQLMVNRGLGTVEQIKNFMEYDLSSLNNPY 60 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 L ++KAV + A +I++ GD+D DG T TAL V A+R L +++Y +P+R + Sbjct: 61 ILQDMQKAVNRIIEAVNRSEKILIYGDYDVDGITGTALLVGALRRL-TDHVNYYIPHRIK 119 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEH-ARSLGIPVIVTDHHLPGDTLPAA 171 +GYGL E V++A +G LI+TVD GIS V+ ++ +I+TDHH P LPAA Sbjct: 120 EGYGLHKEAVEKAAGQGYSLIITVDCGISGKEAVDWSVQNTKTDIIITDHHEPPPVLPAA 179 Query: 172 EAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 A+INP +DC +P K LAG+GVA L+ A+ + N++ E LD+V L Sbjct: 180 LAVINPKRKDCEYPFKELAGIGVALKLVQAV---------YAAANMSSETWKEYLDIVCL 230 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRL 291 GT+ADVVPL NRIL G+ + + G+ AL++ + + + +GF L PRL Sbjct: 231 GTIADVVPLLGENRILVKYGLPYLTKTSKK-GLIALIKASGLRGD-ITSGQVGFVLAPRL 288 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NAAGRL D + V LLL ++ +A +A LD N+ RK +E EA+ + E+ + Sbjct: 289 NAAGRLGDPFMAVELLLTEDEAQANQIAVVLDEKNRKRKSVEDAALKEAIQMIEREISFK 348 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 + L + EWH GV+G++ASR+ ER+++PV+A A G+ KGS RSI G ++ A Sbjct: 349 QS--KVLVLASEEWHPGVIGLVASRLVERYYKPVLAIALDGE-QGKGSARSIPGFNLYQA 405 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 LE + +GGH MAAG SL+ + F + E + LL + DG Sbjct: 406 LEHC----GKNLSGYGGHTMAAGFSLKRESLDNFIREINVYADEVISEDLLVPVMNLDGI 461 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLL 530 S ++T +V + P+GQ P PL +++ + VG+ + ++ + Sbjct: 462 FSLNDITEQVIAEIEKLAPFGQANPGPLLCCPEIQVVNFKGVGKEGEHLKIKIRKENGFI 521 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 DGI FN+ + V LA+ +INE++G R + + I +I Sbjct: 522 DGIGFNLASYSEMLATAERVNLAFVPEINEWQGKRHISLRIKDIQ 566 >UniRef50_UPI0001789928 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789928 Length = 800 Score = 629 bits (1623), Expect = e-179, Method: Composition-based stats. Identities = 191/581 (32%), Positives = 307/581 (52%), Gaps = 30/581 (5%) Query: 2 KQQIQLRRRE--VDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLS 55 K + ++R + E LPP++ L ASRG++SA++ + + + Sbjct: 5 KYEWRIREAASTITERLAHDLSLPPIVASLMASRGIQSAEDGREFLYGTFELTHDPYLMQ 64 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 G+ +AV + A + I++ GD+DADG +ST+L + MR LG ++ D +P+R +GY Sbjct: 65 GMREAVPRIRKALEDREHILIYGDYDADGVSSTSLMIHLMRYLG-ASYDIYIPHRSNEGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL +D AH +G L++TVD GIS+ + +A SLGI VIVTDHH P + LP A A+I Sbjct: 124 GLHNHALDWAHQQGVSLVITVDTGISAVEQIAYANSLGIDVIVTDHHEPPEVLPEAYALI 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP + C +P K LAGVGVA+ L AL E L +V++GT+A Sbjct: 184 NPKIPTCPYPFKGLAGVGVAYKLAQALVG---------------DPPEEWLQIVSIGTIA 228 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D++PL NR+L G+ +R + GI++LLEV+ +++ A ++ F++ PR+NA+G Sbjct: 229 DLMPLTGENRVLVKHGIESMRRTRY-EGIRSLLEVSGIHVEQVTAVNVAFSMAPRINASG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RLD V LL ++ EA LA ELD LN+ R+++ + + EAL + + R ++ +P Sbjct: 288 RLDHAGRAVTLLTTEHREEAERLAWELDGLNKDRQQVVENIVQEALGMVQNRWRGQE-IP 346 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALER 414 + + W+ GVVGI+AS+I ERF+RPV+ + G KGS RSI G + AL Sbjct: 347 PVIVLAGEGWNVGVVGIVASKILERFYRPVVILGIDPETGNCKGSARSIPGFDIYAALLS 406 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 +M FGGH AAG+SL D+ F+Q + L+ L +D S Sbjct: 407 CKD----VMDHFGGHPSAAGMSLHRDRLAAFEQGLHRYAEDALEAEHLIAVCEADLEASL 462 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 +E+++ + + + GP+G P + R +G+ + + ++D I Sbjct: 463 SEVSVPILEQMEQLGPFGMANAVPKIVFRDVVIKDVRKIGKEGKHLKLRLQQKREVIDAI 522 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +F V + +L +NE+ G+R +Q++I +I Sbjct: 523 SFGWGHLADILPVGSVVDVLGELSVNEWNGSRKVQLMIQDI 563 >UniRef50_B1HV84 Single-stranded-DNA-specific exonuclease recJ n=2 Tax=Bacillaceae RepID=B1HV84_LYSSC Length = 773 Score = 626 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 196/584 (33%), Positives = 310/584 (53%), Gaps = 35/584 (5%) Query: 2 KQQIQLRRRE--VDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLS 55 K++ Q+ R + + + +L + ++ A+RG + + E + + + Sbjct: 5 KKRWQVERPDVELVQALQNDLQLSAIAAKILAARGCETTADAESLLNMTEANVHDPFLMH 64 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 G+ +AV + A G +I+V GD+DADG TST + + + LG +N+ + +PNRF GY Sbjct: 65 GMAEAVARIEQALDNGEKILVYGDYDADGVTSTTVMLNVLLDLG-ANVSFKIPNRFIHGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G + +A+ G QLI+TVDNGIS + A+ LG+ VIVTDHH PG+ LP A+ I+ Sbjct: 124 GPHEALFREAYEEGVQLIITVDNGISGIEPIRVAKELGLDVIVTDHHEPGEELPPADIIL 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P L + ++P LAGVGVAF L AL L L++ VA+GTVA Sbjct: 184 HPRLPEGHYPFGELAGVGVAFKLAHALYGELPTH---------------LIEYVAIGTVA 228 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL NR L +G+ +R P ++A+ ++A+ + K++ +GF GPRLNA G Sbjct: 229 DLVPLVDENRYLVKRGIEEMRRSLS-PWVQAMCDIASTEQAKISEETIGFYFGPRLNAVG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RL + S GV LL+ ++ +A LA +L+A N RK+I + + EA+ L E ++ D+L Sbjct: 288 RLGEASPGVELLMAEDSVKATALAKQLNASNTERKDIVKNITEEAIALIESEKKISDSL- 346 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALER 414 L + W+ GVVGI+ASR+ E+++RP I + D GT KGS RSI G H+ + L + Sbjct: 347 -VLVVAGEGWNAGVVGIVASRLVEQYYRPTIVLSLDPDKGTAKGSARSIDGFHLYNELAK 405 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + P FGGH MAAG++L + + R L L V D PLS Sbjct: 406 NRDILP----HFGGHPMAAGMTLSIEHVDELRSRLDTQARACLTEEHLTPVVHIDIPLSL 461 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLD 531 E++ + + + GP+G FP+P++ + R +G E H+K+ + G LD Sbjct: 462 DEISADAIEEIASLGPFGTDFPKPVYVLEDVEISSMRKIGAAENHIKMEL--TNGCDKLD 519 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + F+ +V L INE++G + Q +I+++ Sbjct: 520 SVGFHKGHLHDELTYGIKVSFIGDLQINEWQGRKKAQFMIEDVQ 563 >UniRef50_C6RPU9 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Acinetobacter RepID=C6RPU9_ACIRA Length = 570 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 260/574 (45%), Positives = 374/574 (65%), Gaps = 12/574 (2%) Query: 4 QIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEI 63 IQ+++R + + + P L + A RGV S QELE +K +L L G+E+AVEI Sbjct: 3 NIQVKQRPLLTRVESFQHVSPFLAHILARRGVASEQELELRLKYLLSP-CLKGLEQAVEI 61 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 + A + +I++VGD+DADGATSTAL +LA+R +G +++ YLVP+RF+ GYGL+P + D Sbjct: 62 INQAIDQQKKIVIVGDYDADGATSTALMILALRDMG-ADVAYLVPDRFKYGYGLTPAIAD 120 Query: 124 QAHAR-GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDC 182 A R L++TVDNGISSH GV+ A+ G+ VI+TDHHL PAAEA++NPN C Sbjct: 121 LAFTRFTPDLLITVDNGISSHEGVKQAQDHGMQVIITDHHLTTKETPAAEAVVNPNQLGC 180 Query: 183 NFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA 242 NFPSK+LAGVGVAFY++ L +F + + ++ N+ + LDLVALGT ADV LD Sbjct: 181 NFPSKALAGVGVAFYVLANLCSFRKR------ADQSVSNITQYLDLVALGTYADVASLDY 234 Query: 243 NNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSV 302 NNRIL G+ RI+ +CRPGI ALL++A R+ L A DLGF LGPR+NAAGR++ M + Sbjct: 235 NNRILVDAGLKRIQQQQCRPGILALLDIAGREPAALKAQDLGFVLGPRINAAGRMETMEI 294 Query: 303 GVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYH 362 G+ LL ++ A LA +L+ LN R++IE M+ EAL E+L+ S++ +P L M+ Sbjct: 295 GIECLLAPDLENAYPLARQLNQLNIERRQIEAQMKQEALRYLEQLQLSKENIPPALIMFE 354 Query: 363 PEWHQGVVGILASRIKERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALERLDTLYPG 421 WHQGV+GI+A R+KE+FHRP I FA DG +KGS RS++G+H+RD +E++ YP Sbjct: 355 EHWHQGVIGIVAGRLKEQFHRPSIVFAADEDGIHIKGSARSVEGIHIRDCIEQIAEQYPH 414 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 ++ FGGHA AAGL++ ++ F F+Q F +L+ +D +LL + +DG L + ++ Sbjct: 415 LVRYFGGHAAAAGLTIRKEHFLEFKQVFIQLIAG-MDETLLSATLWTDGELPVEALVLDT 473 Query: 482 AQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL 541 L+ GPWGQ FP P+F+G F+++ R + E HLK+ + G ++D IAFN Sbjct: 474 VDLIEKLGPWGQKFPSPVFEGIFKVVDFRWLKETHLKLRLAL-NNGQVVDAIAFNAKDRF 532 Query: 542 WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 D +V L Y+L+ NEF GN LQ+ I ++ Sbjct: 533 EYDPENDQVDLVYELERNEFNGNTGLQLRIIHLK 566 >UniRef50_C4V0G0 Possible single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Selenomonas RepID=C4V0G0_9FIRM Length = 671 Score = 624 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 199/581 (34%), Positives = 310/581 (53%), Gaps = 29/581 (4%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 +K+ I + + + + P++ +L RG+R+A+E + ++ Sbjct: 11 LKEWIVAQHTDEGDALAAEIGVTPIIGQLLWQRGIRTAEEARAFLHPADTPFHDPFLMAD 70 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +E+ E + A R I++ GD+D DG T+TAL + ++R+LG N+ Y +PNRF +GYG Sbjct: 71 MERGAERVLCAVRRDEPIVIYGDYDVDGMTATALLMRSIRTLG-GNVSYYIPNRFTEGYG 129 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ + + Q G +L+VTVD GI+S V A G+ +++TDHHLPG LP+A A++N Sbjct: 130 LNADALQQIAGEGCRLLVTVDCGIASVDTVAEATG-GMDIVITDHHLPGQMLPSAYAVMN 188 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P+ DC +P K+LAGVGVAF L+ AL R++ + AE LD+ ALGTVAD Sbjct: 189 PHRADCAYPEKNLAGVGVAFKLVQALWQMEREESF-----------AEYLDIAALGTVAD 237 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +VPL NR + G+ ++ C GI+AL+EVA + + +GF L PRLNAAGR Sbjct: 238 LVPLVGENRKIVQMGLRQMAEHPC-VGIRALIEVAGLADKSINTGQVGFQLAPRLNAAGR 296 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L+ G LLL ++ A +A EL+ALN R+++EQ + EA E+ Sbjct: 297 LETARHGAELLLTEDTACASRMAGELNALNTERRDLEQDILAEA----ERQLADFTPDVP 352 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 + + EW+ GV+GI+ASR+ E+++RP I D KGS RSI GLH+ +AL Sbjct: 353 AIVVAGEEWNAGVIGIVASRLVEKYYRPSIVLTRRDD-VYKGSCRSIAGLHLYEALSACR 411 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 +++FGGHAMAAGL+L ++ F++ F E V L +V +PA+ Sbjct: 412 DT----LIQFGGHAMAAGLTLSCERLSDFRRAFSEAVRTRLTAQDFIPKVAVSALAAPAD 467 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 T+E + L P+G P P+F + R + +G + ++ + + + Sbjct: 468 WTVETVEELALLEPYGMGNPRPIFGVRNVRPQKASSIGAEGKHLRMDIGTREHHITALYW 527 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 N LAY INE++G RS+Q ++D + P Sbjct: 528 NAGDLATVLTEEDS-DLAYTPSINEWQGERSVQCMVDTVTP 567 >UniRef50_A5D3H7 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D3H7_PELTS Length = 946 Score = 623 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 188/577 (32%), Positives = 306/577 (53%), Gaps = 23/577 (3%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERS----VKGMLPWQQLSGVE 58 +++ + + ++ P+ +L +RG+ + ++ + + + L ++ Sbjct: 55 WRVKTPAPVLCQIFARKLDISPVTAQLLINRGIYTVEQGRAFIGSELSRLHRPELLRDMD 114 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 AV + A G +I++ GD+DADG T+TAL + R LG ++ DY +P R E+GYG+ Sbjct: 115 TAVARILQAVEAGEKILIYGDYDADGITATALLIKVFRRLG-ADADYYIPGRLEEGYGVH 173 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 E + +A +G L+VTVD GIS+ A E AR+ G+ +I+TDHH P +P A A+INP Sbjct: 174 LEPLQKALQKGTGLVVTVDCGISALAEAEWARANGLDLIITDHHEPPPEIPNACAVINPK 233 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 DC++P K LAGVG Q + + LDL LGTVAD+V Sbjct: 234 RPDCSYPFKELAGVG---------LALKLAQALLERTGAGEKAWLDYLDLACLGTVADIV 284 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 P+ NRIL G+ R+ AG PG++AL+ V+ L+ ++G+AL PRLNAAGR+ Sbjct: 285 PVQGENRILVKHGLPRL-AGTGSPGLQALMAVSGIKGDNLSPREVGYALAPRLNAAGRIG 343 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 +GV LL+ D++ EAR LA EL+ NQ R++IE + EAL+L E Sbjct: 344 TPQMGVRLLMTDDLEEARHLAGELNRYNQVRQKIESKVFEEALSLLEA--DPGLAEAPVP 401 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + P WH GV+GI+ASR+ E+ +RPV+ + G+ +GS RSI G ++ AL Sbjct: 402 VLASPGWHAGVIGIVASRLAEKLYRPVLLISLEGE-LGRGSARSIPGFNVYKALSHCHE- 459 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 +L++GGHA+AAG +E + +++ ++ L + DG + +++ Sbjct: 460 ---YLLEYGGHALAAGFKVEGGMVEDLRKKINGYARTAVEAEKLIPYLELDGIVEVGQVS 516 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 E+ ++ P+G P+PL +L+ R++G+ + + G ++DGI FN+ Sbjct: 517 EELVNEIKLLSPFGPSNPDPLLCCLEAFVLESRVIGKGSSHLKLRLRGKNTVMDGIGFNL 576 Query: 538 DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +V LA+ INE+ G RSLQ+ + ++ Sbjct: 577 GAYAEVLATAEKVDLAFVPGINEYNGRRSLQLEVKDL 613 >UniRef50_C9KKH1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Veillonellaceae RepID=C9KKH1_9FIRM Length = 668 Score = 622 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 198/583 (33%), Positives = 301/583 (51%), Gaps = 23/583 (3%) Query: 1 MKQQIQLRRR-EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 M ++ +L + L RG+R+ E + + Sbjct: 1 MYKKWKLYEPVPELAAFAQEIGRDTTVAALLWHRGIRTRDAAELFLHPERLPFADPFAMR 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++KAV + A +G I V GD+D DG T+T+L +R G + +D+ +P+R +GY Sbjct: 61 DMDKAVARIQKALAQGEHITVYGDYDVDGMTATSLLTRTLRKFG-AKVDFYIPDRMTEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLG-IPVIVTDHHLPGDTLPAAEAI 174 GL+ +++ + L+VTVD GI+S A V + G + +I+TDHHLPG LP A A+ Sbjct: 120 GLNRRALEEIAEQS-DLLVTVDCGIASVADVAAIQGAGKLDIIITDHHLPGSELPPACAV 178 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NP+ DC +P K LAGVGVAF L AL + W + L+LVALGTV Sbjct: 179 LNPHRADCPYPDKDLAGVGVAFKLCQALAAARSGKLW-----DGQSAFTDDLELVALGTV 233 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+VPL NR + QGM+R+ A PG+ AL+EVA +K+ A LGF L PRLNAA Sbjct: 234 ADIVPLRGENRRIVKQGMARMEAT-ALPGVAALVEVAGLKDKKITAGHLGFLLAPRLNAA 292 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR++ GVALL ++ +A LA ELDALN R+EIE + A E L+ + Sbjct: 293 GRIESARTGVALLTAEDRAQADKLALELDALNTERREIESTICQTAEQELESLDMAE--- 349 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 + + W+ GV+GI ASR+ ++F++P I + DG +GS RSI+GL+M +AL Sbjct: 350 TKAIVVAGKGWNPGVIGIAASRLVDKFYKPTIVLSVQEDGICRGSCRSIEGLNMYEALSA 409 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 +L+FGGHAMAAGLSL E++ F+ F L + +V + + P Sbjct: 410 CKE----HLLQFGGHAMAAGLSLREEELPAFRAAFAAYAGAHLSEEDYEPKVSVEFEMMP 465 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 E+T+++ + L P+G P+P F + R + +G + + + + Sbjct: 466 EELTLDLVEELSLLEPYGMGNPKPYFGCRNVRGREAMAIGREQNHLRFKLGTEDAPVTSL 525 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 +N N + + Y INE+ G RSLQ +++++ P Sbjct: 526 MWNRADLAAAVNR-ETLDVVYAPAINEWNGRRSLQCMVEDLSP 567 >UniRef50_A9B300 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B300_HERA2 Length = 573 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 177/578 (30%), Positives = 286/578 (49%), Gaps = 23/578 (3%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSGVE 58 + QL E PLL + +RG R A +E+ + L ++ Sbjct: 8 RHWQLPTSASPSQLRSLGEYHPLLAAILWNRGWRDAAAVEQFLNIDWKQRHDPFLLHDMD 67 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 +AVE + A + R++V GDFD DG T L + ++ G + +P R +GYGL+ Sbjct: 68 RAVERIKQAVAQQQRVVVYGDFDTDGVTGVTLLMQLFKAFGLP-VRPYIPKREGEGYGLN 126 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 +++ H G L+VTVD GIS+ A + A LG IV DHH P LP A A+++P Sbjct: 127 LAAIEKLHQEGLDLLVTVDCGISNVAEISRANELGFDTIVLDHHQPPANLPPAYAVVDPK 186 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 DC +P K L GVGVAF L AL R ++LD+VALGT+AD++ Sbjct: 187 RSDCAYPFKGLCGVGVAFKLYEALWRAGIQPNNLRAR--------DILDVVALGTIADMM 238 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NR+L G+ + + RPG+KALL VA + K+ AS +GF L PR+NAAGRL Sbjct: 239 PLTGENRVLVHFGLQAMNESQ-RPGLKALLRVAGVEQGKIDASSVGFRLSPRINAAGRLV 297 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 D + +LLL + +A A++L++ N R+ + + +Q A L + + L Sbjct: 298 DARIAYSLLLAPDQAQADGFADQLNSTNIERQALTRDVQQAARELAQNSGQLDQ---RIL 354 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + ++H GVVG+ A ++ E F RPV+ D +GS RSI G ++ +AL L Sbjct: 355 VIVGEDFHHGVVGLAAGKLAEEFARPVLVMGKEED-RSRGSARSIPGFNIVNALAECADL 413 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 + K+GGHA AAG ++ + +QR + + + +++ ++ D + ++ Sbjct: 414 FE----KYGGHAAAAGFTIANEHIPELEQRLQAIANQQITDAMMVPQLPIDAEATFDQLN 469 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 ++ +L P+G P+P F +++ R VG + + + G I FN+ Sbjct: 470 LDTLAVLEKMAPFGLENPQPRFCSRRVTVIEARGVGAENQHLRLRLQQGRHYQTAIGFNL 529 Query: 538 DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 L ++ + Y + INE+ G S+Q+ + ++ Sbjct: 530 GDWLAELPNGSQIDIVYTVGINEWNGRSSVQLTLVDLR 567 >UniRef50_B3E2R5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Geobacter lovleyi SZ RepID=B3E2R5_GEOLS Length = 586 Score = 620 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 205/582 (35%), Positives = 321/582 (55%), Gaps = 25/582 (4%) Query: 1 MKQQIQLRRREVDETADLPA--ELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 M +Q L++ + A L A L + + +SRG+ +++ + ML + Sbjct: 14 MHKQWILKQTDPATVAALSAATGLSAVTASILSSRGLTEPEQVASFLSPTLAAMLDPFLM 73 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +G+E+AV L A + + GD+D DG ++TAL V +R++G N+ Y +PNR EDG Sbjct: 74 AGMEQAVVRLVAARAAKETVCIYGDYDVDGISATALLVSGLRAMGL-NVTYHIPNRMEDG 132 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YGL+ + + RG +L ++VD G+++ RS+G+ +I+TDHH P D LP A A+ Sbjct: 133 YGLNGDALRLIKERGIELAISVDCGVTAIEEAILCRSIGLDLIITDHHQPLDQLPDAIAV 192 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 INP+ RDC++P K LAGVGVAF L++ALR+ LRDQG F + P+L + LDLVALGT+ Sbjct: 193 INPHRRDCSYPFKGLAGVGVAFNLLVALRSRLRDQGAFGDNG---PDLRQWLDLVALGTI 249 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+VPL NR+LT G+ R+ G CR G+ AL +VA ++++ +GF L PRLNA Sbjct: 250 ADLVPLVEQNRLLTSAGLQRMGDG-CRIGLAALKQVAGIKG-EVSSGQVGFQLAPRLNAV 307 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRL+ GV LLL ++ +A L+ ELD N R+++E+ + EA+ E +D Sbjct: 308 GRLESAVPGVELLLTEDPQQAAALSAELDGANLERRQVERRIFDEAIAQIEAQGGLQDR- 366 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 + + P+WHQGVVGI+ASR+ ER++RP + A D + KGSGRSI G H+ +AL Sbjct: 367 -NSIVLSSPDWHQGVVGIVASRLVERYYRPTLLVAERDDASGKGSGRSISGFHLLEALHE 425 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + ++GGH AAG+++E + F F + L L E+V D ++P Sbjct: 426 CAD----FLQRYGGHRAAAGVTVEPGQMAAFADAFEQAALTRLGDQELIPELVLDVEVAP 481 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 ++T + L+ GP+G P+ ++L R GE HL + ++ G + Sbjct: 482 RDLTSALVAELQRLGPFGMGNTTPVLLLRQMQVLDCRCFGEGHLNLRLQ--RDGLQFKAL 539 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + V LA + + + G L++ + + Sbjct: 540 GWGMAER----TVPALVDLACTVKLETWNGREQLRLELKDFR 577 >UniRef50_B2A2F5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2F5_NATTJ Length = 831 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 197/587 (33%), Positives = 306/587 (52%), Gaps = 28/587 (4%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGV 57 K I+ E + + +L +L +RGV + +++ + + L + Sbjct: 7 KWNIKTDYSETAKELANSCNISTVLAQLLVNRGVTTPEQVADFLNPSFDSLHSPWLLPDM 66 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 ++AVE++ + I++ GD+DADG T+TAL + + NI Y +P+RF+DGYGL Sbjct: 67 KQAVELIDKIIKSNEPILIYGDYDADGVTATALLYEYLST-KFDNIYYYIPDRFKDGYGL 125 Query: 118 SPEVVDQAHAR--GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 + V+ R +LI+TVD GI+S +E LG VIVTDHH LP+A A+I Sbjct: 126 TNAGVNSVLERFPQCKLIITVDCGINSIQEIEELNRLGKKVIVTDHHEQLGDLPSAHAVI 185 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP + N+P K LAGVGVAF L+ AL + F+E L + LDLV +GT+A Sbjct: 186 NPKIHTTNYPFKYLAGVGVAFKLVSALAEQIETHYDFNEL------LKQYLDLVTIGTIA 239 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL + NRI +G+ I RPG+KAL+++ + ++ A +GF +GPR+NAAG Sbjct: 240 DLVPLTSENRIFVSKGLQYIDE--RRPGMKALMDLLGLEYGEVKAGQVGFVIGPRINAAG 297 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RL V LL + AR LA +LD N+ R+++EQ + EA + + + Sbjct: 298 RLASADEAVQLLTESSESAARELAKKLDKENRERQKVEQKITKEADEMINR--NNLLARG 355 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALER 414 L ++ WH+GVVGI+ASR+ E+++RPVI + G LKGS RSI G +M +AL+ Sbjct: 356 PVLVVWSENWHEGVVGIVASRLLEKYYRPVIVLTRDDEPGKLKGSCRSISGFNMAEALKS 415 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 D L ++K+GGH +AAGL LE F ++ L +WL L + D + Sbjct: 416 CDNL----LIKYGGHELAAGLKLESAHLDEFIKQMNHLAQKWLSEDDLLPSIDIDMEIPE 471 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 +T E+A+ + P+G P+P+ GH ++ R VG+ + ++ +LDGI Sbjct: 472 EALTRELAEEISQLEPFGMGNPQPVIGCGHIQVASTREVGKSSEHLQIKFKNNMGVLDGI 531 Query: 534 AFNVDTALWP--DNGVREVQLAYKLDINEFRGNRS---LQIIIDNIW 575 F VQ A+ I+ F+ S L + + ++ Sbjct: 532 WFKGAEKAKEKNIKTGMPVQAAFIPKISTFKSKSSKGHLSLQLCDMQ 578 >UniRef50_A1HMM2 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMM2_9FIRM Length = 570 Score = 616 bits (1588), Expect = e-175, Method: Composition-based stats. Identities = 178/578 (30%), Positives = 296/578 (51%), Gaps = 25/578 (4%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVE 58 ++ R + + PL+ ++ +RG+ S + + + + L G+ Sbjct: 8 WRVAAADRALQAEIAGQLGITPLVAQILINRGINSVEAADAFLNAGVERLHDPFALKGMA 67 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 A+E + A +I++ GD+D DG T++AL + LG + + Y VP+RF +GYGL+ Sbjct: 68 AAIERIRQALHSKEKIVIYGDYDVDGITASALLYRVLSQLGAA-VAYYVPDRFSEGYGLN 126 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 + GA LI+TVD GI++ V R +I+TDHH PG +PAA A+INP Sbjct: 127 ITALQNLCRAGADLIITVDCGITAVNEVAAIRGE-ADIIITDHHEPGAAVPAALAVINPK 185 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 DC +P K+LAGVGVAF L AL + + + L + LDLVA+GTVAD+V Sbjct: 186 QPDCPYPEKALAGVGVAFKLCQAL---------WQDAGRPVDELYKYLDLVAVGTVADLV 236 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NRI+ +G++R+ A + G++AL+ V ++ + F L PRLNAAGR+ Sbjct: 237 PLVGENRIIVREGLNRLPATE-NAGLRALVAVCGFTDGRMDTGRIAFGLAPRLNAAGRVS 295 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 V +L+ D+ A +A ELDA N R+ IE ++++ + + + L Sbjct: 296 HALSAVEMLITDDALFAGEVAKELDAANAERRRIEDAIRVQVEEMLAGTDLEAN---KVL 352 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + +WH GV+GI+ASRI E+F+RP + + +G +GS RSI+G ++ +AL R L Sbjct: 353 VVAAEDWHHGVIGIVASRIVEKFYRPTLIISI-ENGVGRGSARSIRGFNIFEALCRSSDL 411 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 +L+FGGH+ AAG S+ + ++R L E L P + + D P+ ++T Sbjct: 412 ----LLRFGGHSAAAGFSILPENVDELRRRLNALAAEVLTPDDFRPVIQIDVPVMLRDIT 467 Query: 479 MEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 + + L P+G P P+ + ++L+ R +G + + G + + +N Sbjct: 468 LPLLAELNRLAPYGFGNPAPVLACKNIQVLEARRIGADGSHLKLRVCHEGCPGEVVMWNR 527 Query: 538 DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 V + + ++NE++G S+Q+ +I Sbjct: 528 GDLADKIPVNSLVAMTFFPEVNEWQGRLSIQLRASDIK 565 >UniRef50_C8NEZ1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Granulicatella RepID=C8NEZ1_9LACT Length = 771 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 176/584 (30%), Positives = 291/584 (49%), Gaps = 37/584 (6%) Query: 2 KQQIQLR---RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 +L+ E+ + + + L RL RG+++A+EL+ + + L Sbjct: 5 NYAWKLKENVDEELVTSLSSESGVSRNLVRLCVERGIQTAEELQEFLSPTPHLIHDPFLL 64 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++KAV + A G I + GD+DADG TST + + LG + + Y +PNRF DG Sbjct: 65 HDMDKAVGRIQEAIENGELIHIYGDYDADGITSTTILYETLEMLG-AQVSYYLPNRFTDG 123 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + + G LI+TVD GI++H + +A G VI+TDHH +P A A+ Sbjct: 124 YGPNTPAFQRVIEEGHTLIITVDCGIAAHEPIRYAMENGCDVILTDHHEIPSEIPEAYAV 183 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 ++P + N+P L+G GVAF L AL + E+++L A+GT+ Sbjct: 184 VHPRHPEANYPCGDLSGAGVAFKLAHALLGEFPE---------------EMVELAAIGTI 228 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+V L NR + G+++++ + R G+ +LLE + KL +GF +GPRLNA Sbjct: 229 ADLVSLTDENRTIAKLGIAQMKQTQ-RIGLVSLLEKLSVKMDKLDEKTIGFQIGPRLNAL 287 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRL D + GV LL + EA+ + + + + N+ R+ I + EA + ++ Sbjct: 288 GRLGDATPGVQLLTTFDDEEAQSIVDFMQSENERRQAIVNQIVEEATPIIQEQMNQ---- 343 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALE 413 L + P WH+GV+GI+ASRI E+ +P + + DG KGSGRS ++ DAL Sbjct: 344 -PILVLAQPGWHEGVLGIVASRIVEQTGKPTLVLGISDDGLTAKGSGRSFGEFNLYDALT 402 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + +LKFGGH MAAGL++E + + D + + D L Sbjct: 403 SVKD----HLLKFGGHHMAAGLTVETIMLPTIIDGLEQYAKDHQDLLDAKATLTIDEVLP 458 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVG--ERHLKVMVEPVGGGPLL 530 ++T+E + L P+G PEP+ ++ +L+G ++HLK+ ++ L Sbjct: 459 LKDITVEWIESLASLKPFGTDNPEPIVSLEGIQVASTQLLGADKKHLKLHLKEDNSTYTL 518 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +AF+ ++ +A L+INE++ NR Q+++ +I Sbjct: 519 QAMAFSKGEWAASLQPDTKISIAGTLEINEWQNNRLPQLMVKDI 562 >UniRef50_B8FQU1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Desulfitobacterium hafniense RepID=B8FQU1_DESHD Length = 801 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 188/587 (32%), Positives = 297/587 (50%), Gaps = 31/587 (5%) Query: 1 MKQQIQLRRREVD------ETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLP 50 M ++I + + + + P++ + RG+ + +E+ ++ + Sbjct: 1 MTKRIWTKPQPLPGFKDSRSPLPQRLGITPVVADILRQRGIEAEEEIMEFLRPSLLNLNS 60 Query: 51 WQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNR 110 + +A+E L A + +I++ GD+D DG TSTAL + LG + Y +P+R Sbjct: 61 PFAFREMARAIERLELARAQEEKILIYGDYDVDGVTSTALLYKVLTDLGFKAVAY-IPSR 119 Query: 111 FEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA 170 ++GYGL + + +A ++++TVD GI++ VE+ARS GI +I+TDHH P D+LP Sbjct: 120 MDEGYGLHKDAITKALQANVKVMITVDCGITAVEEVEYARSQGIDIILTDHHEPPDSLPQ 179 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A AI+NP ++D +P + LAGVGVAF L AL L +E + E+LDL A Sbjct: 180 AYAILNPKVKDSGYPFRDLAGVGVAFKLAQALLERL------EEGKSGAYAVLEILDLAA 233 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPR 290 LGT+AD+VPL NRI+ G+ ++ G++ LLE + L A + F + PR Sbjct: 234 LGTIADLVPLTHENRIIVAYGLRQMENT-IHLGLRTLLEECGLWGKPLKAGQIAFMVAPR 292 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NAAGR+D G+ LLL + A LA L N R++ E+ + EA+ + EK Sbjct: 293 INAAGRMDSARAGLELLLTGHEERAVELARFLSRENTLRQDTEKEIFAEAVEILEK---- 348 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRD 410 + +P + + WH GV+GI+ASR+ ER++RPV A + KGS R I G H+ D Sbjct: 349 -NPMPRVIVLSGKNWHHGVIGIVASRLVERYYRPVFLIAEEEE-IGKGSARGIGGYHVLD 406 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 L+ L + KFGGH+ AAG SL+ + L ++ + L + + D Sbjct: 407 ELKAQAEL----LEKFGGHSQAAGFSLKLETIPLLREALNQ-AALHLPEEMFYERIRVDQ 461 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPL 529 + + + L P+G P P+ G + L VG+ H + G Sbjct: 462 CVPLEVLDASLLHDLEHLAPFGFGNPSPVLAGRDYPLYMADTVGKDHAHLKCMFGPQG-E 520 Query: 530 LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 +GIAF L G V +A+ LD N FRG +S+Q++I +I P Sbjct: 521 WEGIAFRKGEELANILGSATVDVAFGLDWNTFRGAQSIQLMIKDIQP 567 >UniRef50_Q3A3C6 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Desulfuromonadales RepID=Q3A3C6_PELCD Length = 574 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 209/576 (36%), Positives = 311/576 (53%), Gaps = 23/576 (3%) Query: 7 LRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVEKAVE 62 + + L L RG+ S E++ + M ++ ++KAVE Sbjct: 14 VSEQLDAVALQQCLGLSRLASEALLRRGLGSLDEVQAFLQAKLSSMPDPCLMADMDKAVE 73 Query: 63 ILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVV 122 L A +I V GD+D DG + TAL V +R+ G + + Y +P R +DGYG+S + Sbjct: 74 RLAQAVCNREKIAVHGDYDVDGISGTALLVETLRAFG-ARVSYHIPLRLKDGYGVSAAAL 132 Query: 123 DQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDC 182 + GA L VTVD G+S+HA A LG+ +I+TDHH +TLPAA AI+NP+ DC Sbjct: 133 EDCATHGATLAVTVDCGVSAHAQAMRAAELGLDLIITDHHQVPETLPAALAIVNPSRPDC 192 Query: 183 NFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA 242 +P K+LAGVGVAF L++ALR LRD G + + + P+L LDLVALGT+AD+VPL Sbjct: 193 GYPFKNLAGVGVAFLLLVALRKHLRDLGHW--KTVCEPDLRYGLDLVALGTIADIVPLKG 250 Query: 243 NNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSV 302 NR LT G+ + R G++AL +VA D K+ +GF L PR+NAAGRL+D +V Sbjct: 251 LNRALTKAGLELLSHS-GRAGLQALKKVAGVD--KVTCGSIGFRLAPRINAAGRLEDGAV 307 Query: 303 GVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYH 362 GV LLL +++ +A A LD +N R+ IEQ +A E+ + + + Sbjct: 308 GVELLLQESVQDAMATAEMLDRVNSDRQAIEQQTLEQAD---ERWRQRSSGATHSIVLAD 364 Query: 363 PEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGM 422 WH GV+GI+ASR+ E++HRP I A +G KGSGRSI+GLH+ AL Sbjct: 365 ERWHPGVIGIVASRLVEKYHRPTILIAL-NEGVGKGSGRSIKGLHLYQALSDC----QAF 419 Query: 423 MLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVA 482 + FGGH AAGL+++ + + F + F +L + L P L+ DG +S E+ ++ Sbjct: 420 LQGFGGHEYAAGLTIDAGRVEAFARDFEKLARQTLSPEDLRFRQFHDGEVSLEEIDLDSI 479 Query: 483 QLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL 541 L P+G P+P++ L + VG++HL+ + GG L IAF + Sbjct: 480 DELSRLAPFGPGNPQPVYLARGVHLQSVQRVGDKHLRFI--ACQGGHGLPCIAFGMAERQ 537 Query: 542 WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 G + + + NE+R S+Q+ + +I P+ Sbjct: 538 AQLAGPQ--DILFTPQRNEWRERVSVQLQVRDIRPV 571 >UniRef50_C6IZW2 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Bacillales RepID=C6IZW2_9BACL Length = 801 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 189/579 (32%), Positives = 298/579 (51%), Gaps = 27/579 (4%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSGV 57 + E + PLL L +R + S ++ E ++ LSG+ Sbjct: 7 RWTQLPYDEEAARRLAGQLNISPLLASLLVTREMESPEKAELFLRGSLADQHDPMLLSGM 66 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 ++AV + A G RI++ GD+DADG +ST L + MR LG + DY +P+R ++GYGL Sbjct: 67 KEAVPRIRRAVENGERILIYGDYDADGVSSTTLMIYLMRHLG-ATYDYYIPHRTKEGYGL 125 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 V++ H +G LIVTVD GIS+ V +A ++G+ VIVTDHH P LP A A+INP Sbjct: 126 HIPVLEHYHKKGFTLIVTVDTGISAVEQVAYANAVGMDVIVTDHHEPPAVLPEAYALINP 185 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 L C +P K LAGVGVA+ L AL + +L ALGT+AD+ Sbjct: 186 KLPYCTYPFKGLAGVGVAYKLAQAL--------------LGEDTPIAWTELAALGTIADL 231 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 +PL NR++ G++ + PG+ ALL + + ++ ++ + F L PR+NA+GR+ Sbjct: 232 MPLTGENRMIVKSGLASMERS-AFPGMTALLGTSGWSSGEVTSTAVAFGLAPRINASGRM 290 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 + VALL +N+ EA +A ELD LN+ R+ I + M EAL E E+S + LP Sbjct: 291 SHANRAVALLTAENMEEAEAIAEELDVLNKERQIIVEDMVQEALQQLESQEQS-EGLPDV 349 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLD 416 + + W+ GVVGI+AS++ ER++RP I + G KGS RSI G + +AL Sbjct: 350 IVVAGEGWNAGVVGIVASKLLERYYRPTIVLGIHPETGECKGSARSIPGFDIYEALTDCA 409 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 L + FGGH AAG+SL ++ + F +R L P + +D S + Sbjct: 410 DL----LDHFGGHPSAAGMSLSRERLEEFGRRLNAFAAGRLTPEHFVPVLETDLTCSLKD 465 Query: 477 MTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 +T++ + L+ P+G P L +LL+ R +G+ + + G ++ +AF Sbjct: 466 ITLQAIEQLQQLAPFGMANTCPRLLLRGLKLLECRQMGKDGKHLKLILGQNGKTVEAVAF 525 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + + + + +NE+ G+R Q++I ++ Sbjct: 526 GKGELAPLLSEEARIDIVAEASVNEWNGSRKPQLMIQDL 564 >UniRef50_Q8EPR4 Single-strand DNA-specific exonuclease n=1 Tax=Oceanobacillus iheyensis RepID=Q8EPR4_OCEIH Length = 771 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 174/580 (30%), Positives = 298/580 (51%), Gaps = 35/580 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 MK + + + + + L PLL++L+ RG+ + +E++R + + L Sbjct: 6 MKWRYN-QVEDHNSSLLKDTNLSPLLKQLFIQRGITTNEEVQRFLSPQIDDLHHPFLLKD 64 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +EKAV+ ++ A + +I+V GD+DADG +STA+ + A+ LG + D+ +PNRF +GYG Sbjct: 65 MEKAVQRIHKAIQNEEKILVFGDYDADGVSSTAVMLKALTELG-ATCDFYIPNRFTEGYG 123 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + A +G ++I+TVD GI+S A LG+ +I+TDHH P +P + AII+ Sbjct: 124 PNEAAFRNASEQGYKVIITVDTGITSVHEANIANELGMDLIITDHHEPQTNIPESFAIIH 183 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P +P LAGVGVAF AL + ++ L A+GT+AD Sbjct: 184 PKCSP-EYPFNELAGVGVAFKFAEALLGYFP---------------SQFLSYTAIGTIAD 227 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +VPL NR+L G+ +RA G+KAL++V + L +GF++GPRLNA GR Sbjct: 228 LVPLFDENRVLASYGLKELRATTD-VGLKALIQVCQIE--DLDEQSIGFSIGPRLNAVGR 284 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L D + V LLL +++ A +ANE++ +N RK++ Q + EA + Sbjct: 285 LQDADLAVELLLTEDMEAALEIANEINKINDERKKVVQRIVSEADQIVNS-----KPERR 339 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAF-APAGDGTLKGSGRSIQGLHMRDALERL 415 + + + W+QGV+GI+AS + ++ RP I +G +KGS RSI + + R+ Sbjct: 340 IIVVSNEAWNQGVLGIVASHLVRKYDRPAIVLSTQPENGVVKGSARSIPAFDLFEGCMRM 399 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L+ FGGH+ AAG++L + + + +++ L L+ E+ G L+ Sbjct: 400 RDLF----THFGGHSQAAGMTLPIENVDKLELQLDDILNNELAEEDLKQELEISGQLNME 455 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 + +E+ + + P+G P+P+F + +G + + ++ +D I F Sbjct: 456 NINIELIKDISKLAPFGMKNPKPVFQIKEIPSDIKRIGSKKNHLKMQFRKNSTRMDAIGF 515 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 A +Q+A +L INE+ GN++ Q++I ++ Sbjct: 516 GWGDAYNQIAPHTPIQIAGELSINEWNGNQTAQLMIQDMK 555 >UniRef50_B0VNC7 SsDNA exonuclease, 5'--> 3' specific , Mg dependent n=13 Tax=Moraxellaceae RepID=B0VNC7_ACIBS Length = 566 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 250/573 (43%), Positives = 365/573 (63%), Gaps = 13/573 (2%) Query: 4 QIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEI 63 +IQ+++R + + +PP + + A RGV+S QELE +K +L + L G++ AV + Sbjct: 3 KIQIKQRPLLTRPEQFQGVPPFIAEILARRGVQSEQELELKLKNLLAPE-LKGLDAAVAL 61 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 + A E +I++VGD+DADGATSTAL +L +R +G + +DYLVP+RF+ GYGL+P + + Sbjct: 62 MDQAIDEQKKIVIVGDYDADGATSTALMMLVLRDMG-AQVDYLVPDRFKYGYGLTPAIAE 120 Query: 124 QAH-ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDC 182 AH L++TVDNGISSHAGV+ A +LG+ VI+TDHHL P AEA++NPN C Sbjct: 121 LAHHTYQPDLLITVDNGISSHAGVDAAHALGMQVIITDHHLTTKETPLAEAVVNPNQLGC 180 Query: 183 NFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA 242 FPSK+LAGVGVAFY++ L + Q + + + LDLVALGT ADV LD Sbjct: 181 EFPSKALAGVGVAFYVLANLASLRNRQ------GKSTSKVTQYLDLVALGTYADVAVLDY 234 Query: 243 NNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSV 302 NNRIL G+ RI+ +CR GI ALL++A R+A + A DLGF LGPR+NAAGR++ M + Sbjct: 235 NNRILVDAGVKRIQQHQCRVGILALLDIAGREATSIRAQDLGFVLGPRINAAGRMESMRI 294 Query: 303 GVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYH 362 G+ LL D + A +A +L+ LN R++IE M+ +AL+ + L+ S+ +P L ++ Sbjct: 295 GIECLLADTMETAYPIAQQLNQLNIDRRQIEGEMKQQALSALDSLQLSQQDIPAALVLFE 354 Query: 363 PEWHQGVVGILASRIKERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALERLDTLYPG 421 WHQGV+GI+A R+KE+FHRP I FAP DG +KGS RSI G+H+RD +E++ +P Sbjct: 355 ENWHQGVIGIVAGRLKEQFHRPTIVFAPDEDGIHIKGSARSIDGVHIRDTIEQVAEQHPE 414 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 ++ FGGHA AAGL++ ++ F+ F+ F + V +D S+ Q + +DG L + + ++ Sbjct: 415 LVSHFGGHAAAAGLTIRKENFEAFKTVFNDCVA-AMDESIFQATLWTDGELPVSALQLDT 473 Query: 482 AQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL 541 + GPWGQ FP P F+G+F+++ R + E HLK+ + D IAFN Sbjct: 474 LNWIEQLGPWGQKFPLPQFEGYFKVIDFRWLKETHLKLRLAIDQ--YSFDAIAFNAAGRF 531 Query: 542 WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 D V L Y++D N F GN SLQ+ I ++ Sbjct: 532 EFDPMRDHVHLVYEIDRNVFNGNVSLQLRIVHL 564 >UniRef50_Q1WT52 Single-stranded-DNA-specific exonuclease n=5 Tax=Lactobacillales RepID=Q1WT52_LACS1 Length = 777 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 178/584 (30%), Positives = 291/584 (49%), Gaps = 37/584 (6%) Query: 2 KQQIQ---LRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 K++ Q L E + P ++ ++ RG S + + + + + Sbjct: 5 KKEWQEIELSENEHLDELIEETGFPKIVLQILMERGYDSLEAINNFLDPDARGLYDPNFM 64 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +E V+ + A G +I++ GD+D DG TSTAL + LG + ++Y +P+RF+DG Sbjct: 65 HDMELGVDRIQQAIMNGEKIVIYGDYDVDGITSTALMYETLEELG-AEVEYYIPDRFKDG 123 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + EV + G LIVTVDNG++ H +++A G+ V+VTDHH +TLP A AI Sbjct: 124 YGPNVEVYKRLIDEGVSLIVTVDNGVAGHEAIDYANQHGVDVVVTDHHELPETLPDAYAI 183 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 I+P + ++P L+GVGVAF + AL L ++LDLVALGTV Sbjct: 184 IHPRHPEGDYPFGELSGVGVAFKVAAALLEELPQ---------------DVLDLVALGTV 228 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+V L NRIL G+ ++ RPG+++L +VA + + +GF+L PRLNA Sbjct: 229 ADLVSLTGENRILVKYGLQLLQQTM-RPGLQSLYKVAGIEVPTITEETIGFSLAPRLNAL 287 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+++ S+GV LL + A LA + LN R+E + EA+ + Sbjct: 288 GRMENGSLGVELLTTLDEERAEELAKTTNQLNIKRQEEVNKIVEEAVAQLANKSENHL-- 345 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG-DGTLKGSGRSIQGLHMRDALE 413 + WH+GVVGI+ASR+ + +P + + G KGSGRSI+ M DAL+ Sbjct: 346 --VNVVAGNNWHEGVVGIVASRLVDMTGKPSLVLSIDEKTGIAKGSGRSIEAFQMFDALD 403 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + ++KFGGH MA GLSL+ +K QQ E + + V P++ Sbjct: 404 SHRDI----LMKFGGHHMACGLSLDREKLSDLQQVVDEEGKKQGIEHATKPVVKV-IPVN 458 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 ++ + + L P+G P P+F+ + + + +G++ + ++ +D Sbjct: 459 LDDVNLGLEAQLEALAPFGTDNPRPVFEFKDYEVNTVQAIGQQKNHLKLQLQSNNSQVDA 518 Query: 533 IAFNVDTAL--WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + F + + + V+L L N ++ +LQI+I++I Sbjct: 519 LDFGIGSKKISEIERNKNSVRLIGTLGKNVWQSRVNLQIMIEDI 562 >UniRef50_C9LKW7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKW7_9FIRM Length = 667 Score = 606 bits (1563), Expect = e-172, Method: Composition-based stats. Identities = 179/590 (30%), Positives = 291/590 (49%), Gaps = 38/590 (6%) Query: 2 KQQIQLRRREVDETADLPA-----ELPPLLRRLYASRGVRSAQ----ELERSVKGMLPWQ 52 K + R +E +P +P R+ RG+ + + L ++ + Sbjct: 7 KPRWVFRGASSEEKVAVPDFFNLNNIPEGTARIMMRRGISTEEKLTHFLYDTLDNLSDPF 66 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 + G+++AV + A +I++ GD+D DG TST++ V +R LG +++++ +P R E Sbjct: 67 LMKGMQQAVRRIIQAIDLKEKIVIYGDYDVDGITSTSICVRCLRKLG-ADVNFYIPLREE 125 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 +GYGL+ + +++ G L++TVD GISS V A + +I+TDHH P LP Sbjct: 126 EGYGLNRDAINKLSKEGVSLLITVDCGISSADLVAEAPQS-LDIIITDHHQPPKVLPDCV 184 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A++NP+ DC +P K LAG GVAF L + L + + E ++LVALG Sbjct: 185 AVLNPHQEDCPYPYKELAGCGVAFTLCRGIYKELYN-----------EDYKENIELVALG 233 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQK----LAASDLGFALG 288 T+ADVV L NRIL +GM+R + G+ ALL + + L A + F L Sbjct: 234 TIADVVSLTGENRILVKEGMARFLLTPIK-GLSALLRITGLVNEDTKEILHADYISFGLA 292 Query: 289 PRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLE 348 PRLNAAGR+ GV L+ ++ EA LA L N R+ IE+ + EAL +L+ Sbjct: 293 PRLNAAGRITHAKYGVELMTTESGEEAEALAQILCDTNIERQHIEREIYEEALQRIAELQ 352 Query: 349 RSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHM 408 D L + +WH GV+GI+ASRI E +HRPV+ +G KGS RSI ++ Sbjct: 353 IQDDL---VLVIDGKDWHPGVIGIVASRILELYHRPVLVIT-VRNGVGKGSCRSISAFNI 408 Query: 409 RDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS 468 +ALE++ G ++++GGH MAAG S+ ++ F++R + + + Sbjct: 409 HEALEKMA----GFLIQYGGHKMAAGFSIPAERISEFRKRINDYAKGIITVDDRIPVLEL 464 Query: 469 DGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGG 527 + L E+ +E + L P+G P+PLF + R +G Sbjct: 465 EESLPLDEVNIEFIRSLDLLEPYGSDNPKPLFASFRVFVETARRIGNDRKHFKCRLSQNR 524 Query: 528 PLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 ++ I + + P V + Y+ +I+++ G +Q+I +I P+ Sbjct: 525 EPVEAIFWGIGDK-DPCCPGDIVDIVYEPEIHDWYG-EHVQLICKDIRPV 572 >UniRef50_C6P9C5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P9C5_CLOTS Length = 819 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 179/583 (30%), Positives = 307/583 (52%), Gaps = 33/583 (5%) Query: 1 MKQQI---QLRRREVDETADLPAELPPLLRRLYASRGVRS----AQELERSVKGMLPWQQ 53 M ++ + E + +L + + +RG + L + M Sbjct: 1 MAYNWVSKKILNENLVEKIKIKYKLKEYIAQTIVNRGYDDLKKVDEYLNPDLNMMHSPFL 60 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 L G+EKA ++ + +I + GD+D DG T T++ ++ LG +++++ +P+R ++ Sbjct: 61 LDGIEKASSVIKYHIEKNNKITIYGDYDVDGITGTSILYKTLKKLG-ADVNFYIPDRLQE 119 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG++ +++ + G+ LI+TVD GI+S VEHA+ LGI +IVTDHH D LP A Sbjct: 120 GYGINLNAIEKIYNLGSSLIITVDCGITSVIEVEHAKKLGIEIIVTDHHQVPDVLPDATC 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 +INP++++C +P + L+GVGVAF L LAL + + LD+VALGT Sbjct: 180 VINPHIKNCTYPYRELSGVGVAFKLCLALIG---------------DDALDYLDIVALGT 224 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 VAD+VPL NRI+ +G+ ++ K G+KAL+ V+ + + + +GF L PRLNA Sbjct: 225 VADIVPLTGENRIIVKEGLKMMKNSK-NKGLKALINVSGLNNKDINTYHVGFVLAPRLNA 283 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGRL+ V LL D+ EA +A L++ N R+E+E+ M EA+ E + Sbjct: 284 AGRLESAVSCVNLLTTDDDIEANRIAEYLNSENIKRQELEKKMLDEAIVQVET--KIDLD 341 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 + +Y +WH G++GI++SRI E+++RP I + GD T KGSGRSI+G ++ DA++ Sbjct: 342 KEKFIVLYSEDWHPGIIGIVSSRITEKYNRPSILISICGD-TGKGSGRSIKGFNIYDAIK 400 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 ++ FGGH MAAG+++++D+ + F+ + E L+ L + + + Sbjct: 401 YA----GDCLIGFGGHEMAAGITIKKDEIESFKDKLNEYAESKLNDIDLIPTIEIETSIE 456 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 + +E A L P+G P P + + + Q VG + + D Sbjct: 457 NETIDLEGANQLSLLEPFGNSNPMPAYIINHLHVKQTYTVGNNK-HLRIIAQKNDMCYDI 515 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 I F++ + + +A +++NE+ G++ ++II +I Sbjct: 516 ILFHMGSEANKFKEGYIIDIAGYINVNEWNGDKKVEIIAKDIK 558 >UniRef50_Q2LTE9 Single-stranded DNA-specific exonuclease n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LTE9_SYNAS Length = 586 Score = 604 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 189/578 (32%), Positives = 298/578 (51%), Gaps = 19/578 (3%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQE----LERSVKGMLPWQQLSGV 57 + +E + ++ + ASR +++ + L S+ + + + Sbjct: 18 NWVMSDVNKEAQYLLVKELGIHWIMSSILASRDIQTPDDARKYLYPSLHDLHNPFLMKDM 77 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 + V L A +G +I+V GD+DADG TS A+ V +R + +++ Y +P+R ++GYGL Sbjct: 78 QLGVNRLIQAVYQGEKIVVYGDYDADGITSVAVLVKFLRDIQ-ADVSYYIPDRIDEGYGL 136 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + + +D+ + A LI+TVD GIS + +ARSLG+ I+ DHH D+LP A A INP Sbjct: 137 NRKAIDRIKEKSASLIITVDCGISDCDEILYARSLGLDTIILDHHEVSDSLPTAVASINP 196 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 DC FP K LA VG+ F ++ALR LR +G++ PNL E LDLVALGT+ D+ Sbjct: 197 KRPDCPFPLKHLAAVGIVFNFLIALRGNLRKEGFW--HGKPYPNLKEYLDLVALGTIGDI 254 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 P+ NRI G+ + GK R GI+AL E+ D Q + F+L PR+NAAGR+ Sbjct: 255 CPMVDENRIFVRVGLELLTEGK-RVGIRALKEICGVDTQAVDTEKASFSLIPRINAAGRV 313 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 V LLL D++G+AR LA +LD+ N+ R+ +E+ + E + EK R+ Sbjct: 314 GLPDDAVELLLADDMGKARDLAVKLDSYNRRRRALEKNILEEIIEDLEKTISDRNRT--A 371 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 L M +WH GV+GI+AS+I +R+ RP I + DG KGSGRSI ++ L Sbjct: 372 LVMASEKWHPGVIGIVASKIADRYDRPAILISL-KDGIGKGSGRSIANFNIYQGLREC-- 428 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 ++ +GGH AAG+S+ E+ + F + E+V E + S + ++ Sbjct: 429 --EDYLISYGGHRYAAGISIMEEDIEQFAETLDEIVRENVLQSDFISATFIEAQCHLNDI 486 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDGHFRL-LQQRLVGERHLKVMVEPVGGGPLLDGIAFN 536 T E+ + P+G PEP+ +VG HL++ V G + I F+ Sbjct: 487 THELLAQMELLAPFGSKNPEPVLCVRNVNAFSPAVVGNNHLRMRV--SEAGVSRNTIWFS 544 Query: 537 VDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + N + +A+ IN + G +Q+ + +I Sbjct: 545 QGHFIRELND-SCLDIAFTPQINTWNGASDIQLKMKDI 581 >UniRef50_D2RLC4 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLC4_ACIFE Length = 782 Score = 602 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 178/578 (30%), Positives = 288/578 (49%), Gaps = 26/578 (4%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSGVE 58 ++ R T + PLL + R + ++++ ++ +L ++ Sbjct: 7 RRTDEAREPQIRTLCRELGISPLLAGILVRRDLTEPEKVKEFLEGKTQPYYDPFRLKDMD 66 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 +AV+ + A ++G + + GD+D DG ++++L L +++ G + +D VP R +GYGL+ Sbjct: 67 RAVDRILQALQQGEPMTIYGDYDVDGTSASSLLYLFLQARG-AKVDVYVPRRDREGYGLN 125 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 +++ ARG +L++TVD GIS V A G+ +I+TDHHL LP A A++NPN Sbjct: 126 GPALEKIAARGTKLLITVDTGISGAQVVADAPK-GLDIIITDHHLAPRQLPPALAVVNPN 184 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 +P K +AGVGVAF L AL EL++LVALGTVAD+V Sbjct: 185 QPGDEYPFKGIAGVGVAFKLCQALEQR--------RTGQPDLYWDELIELVALGTVADMV 236 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NR + +G++R+ PG++AL+ V + + +GF LGPR+NAAGRLD Sbjct: 237 PLQDENREIVRKGLARMPHSPL-PGLQALIHVTVAPGSAINSGTIGFGLGPRINAAGRLD 295 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 D V LL + A+ LA EL++ NQ R+ + Q + EA E+ + L Sbjct: 296 DAMTAVKLLTARDPETAKELAEELNSANQERQALSQKIFEEA----ERQLAKQGPPEWSL 351 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + WH GV+GI+ASR+ E++H P + + G+ T KGS RSI L + AL+R Sbjct: 352 VLGEEGWHPGVIGIVASRMTEKYHLPSVLLSIDGE-TAKGSCRSIPPLDLYQALDRCRD- 409 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA-EM 477 +++FGGHA AAGL++ + F++ F +V E LD + V D + E+ Sbjct: 410 ---HLVQFGGHAQAAGLTIRTAEIPAFREAFARVVAEMLDHKPYEPAAVPDWFVPEDREI 466 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN 536 T E L P+G P P+ ++ + L+G H + GG G+ + Sbjct: 467 TPEAVAQLAQMEPFGVGNPAPVLGFAKAQIQEVSLLGRDHNHLKFLLKQGGFRYKGLLWQ 526 Query: 537 VDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +A+ +N FRG ++ + + + Sbjct: 527 EGPRFHSFYPGEVAAVAFSPRVNTFRGVTAVDLEVSAV 564 >UniRef50_C1SHI0 Exonuclease RecJ n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHI0_9BACT Length = 592 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 193/585 (32%), Positives = 315/585 (53%), Gaps = 20/585 (3%) Query: 1 MKQQIQLRRREVDETADL--PAELPPLLRRLYASRGVRSAQELERS----VKGMLPWQQL 54 ++ + R+ E + ++L +P + R + +A L+ +KG+ + Sbjct: 9 LRYKWIYRKPECSDISELADELGMPVCITEALYKRELFNADVLDAYFKTPLKGISSPFLI 68 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +EKA + + + T+I + GD+D DG TS AL L ++ +G +++ Y +PNR ++G Sbjct: 69 KDMEKAAAAIAESIKNNTKICIYGDYDVDGVTSVALMFLFLKEVG-ADVTYYIPNRLQEG 127 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA-AEA 173 YGL+ + G++LI+TVD GI++ V++A S+G+ VI+TDHH P +++P A A Sbjct: 128 YGLNKTAIKDIAEAGSRLIITVDCGINAMEEVQYAVSMGVEVIITDHHQPSESIPEGAAA 187 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 ++NP D K L+GVGVAF L++ALR L + G F + IPN+ + LDLV LGT Sbjct: 188 VVNPMREDDTSAFKGLSGVGVAFKLVMALRYKLNESGRFKGK---IPNIKKYLDLVTLGT 244 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +ADVVPL NRI+ G+ + CRPG++ L VA D QK+ + +GF L PR+NA Sbjct: 245 IADVVPLVGENRIIVRHGLEILSGKNCRPGLRELKRVAGIDGQKVTTTHVGFGLAPRINA 304 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 GR+ G+ LL+ ++ ++ LA ELD N++R++IE+ + E+ EK + Sbjct: 305 VGRMGASDKGLRLLITNDREQSLYLAEELDKENKSRQDIERHIIEESFKRVEKNKLHEKY 364 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 GL +Y EWHQGV+GI+ASR+ E+++ P I DG KGSGRSI + LE Sbjct: 365 --KGLVLYSEEWHQGVIGIVASRLVEKYNLPAIVLTF-EDGVGKGSGRSIPSFDLYKGLE 421 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 ++ + +L FGGH AAGL +EE Q+RF + V + L+P E+ D + Sbjct: 422 QMQDI----LLSFGGHKYAAGLRIEEQHITSLQKRFHKAVEDLLEPKDFVAELKIDALME 477 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGH--FRLLQQRLVGERHLKVMVEPVGGGPLLD 531 P++++ E+ + L P+G EP+F + + VG + + + G + D Sbjct: 478 PSDVSSELMKWLGRMEPYGAGNREPVFCMRGVNKHQEPVFVGRESMHLKIFLEKNGKVFD 537 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 I +N+ G + + + R Q+++ +I P Sbjct: 538 CIGYNMKAYKDVVYGNESFDIVFSPAATGYYHGRYTQLVLKDIKP 582 >UniRef50_Q39XC5 RecJ exonuclease n=6 Tax=Desulfuromonadales RepID=Q39XC5_GEOMG Length = 578 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 220/581 (37%), Positives = 315/581 (54%), Gaps = 24/581 (4%) Query: 2 KQQIQLR--RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM----LPWQQLS 55 +++ +LR +E + + + P L L A+RG+ + R + L Sbjct: 6 EKRWELRTNDKEAAQRIASDSSVDPFLAALLANRGIADGESARRFLSSSLGDVSDPFLLK 65 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 G+E+AV L A + V GD+D DG T+TAL V R++G Y +P R E+GY Sbjct: 66 GMEEAVARLCAARARRETVCVYGDYDVDGITATALLVSFFRAVGIRCF-YHIPKRLEEGY 124 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GLS + + + + AQ++VTVD G+++ A E +LG+ +++TDHH PG +P A A+I Sbjct: 125 GLSVDGLRKVAEQ-AQVVVTVDCGVNAVAEAELCLTLGVDLVITDHHTPGPAIPKACAVI 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP C++P KSLAGVGVAF +M+ALR LR +G F PNL E LDLVALGT+A Sbjct: 184 NPLQPGCSYPFKSLAGVGVAFNVMVALRGRLRAEGAF--AGGNGPNLREYLDLVALGTIA 241 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 DVVPL NRI G+ + A R G+KAL +VA ++ +GF L PRLNAAG Sbjct: 242 DVVPLVGENRIFVKYGLRELSAS-SRVGVKALKDVAGVTGA-VSCGAVGFRLAPRLNAAG 299 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R++D + GV LLL G A +A ELDA N R+ +E+ + +AL + Sbjct: 300 RMEDAAAGVELLLETEPGRAAAIAAELDANNDERQALERQILTDALGRVQGNTAMEGR-- 357 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + + WH GV+GI+ASR+ + FHRP + A +G +GSGRSI G H+ DAL Sbjct: 358 KSIVLASAAWHPGVIGIVASRMVDLFHRPTVLIAL-QEGNGRGSGRSIPGFHLYDALGAC 416 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 ++KFGGH AAGLS++E +LF RF E+ L L + D LS Sbjct: 417 ADQ----LVKFGGHRYAAGLSIDEPTLELFVDRFEEVAAGLLSADDLIPVLRVDAVLSAQ 472 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 ++T +A L P+G PEPLF ++++ V HLK V GGG D I Sbjct: 473 QVTAGLADALSSLEPFGAGNPEPLFVLKDMEIVRRWAVRGNHLK--VRLSGGGFTFDAIG 530 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 FN+ T D+ V + + L NE+ G ++LQ+ + +I Sbjct: 531 FNLATK--EDSLPDLVDIVFTLGWNEWNGRKTLQLSLKDIR 569 >UniRef50_B6SE72 RecJ n=2 Tax=Kingella RepID=B6SE72_9NEIS Length = 570 Score = 600 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 277/579 (47%), Positives = 389/579 (67%), Gaps = 18/579 (3%) Query: 1 MKQQIQLRRREVD---ETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGV 57 M Q+ R V + A A PPLL +LYA+R V+SA EL S+ ++P+ QL Sbjct: 1 MSHTKQIATRPVVAEVQAALQNAGTPPLLAQLYAARHVQSADELGDSLSQLIPYTQLKNC 60 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 E A + L A + +I+++ D+DADGAT+ ++ + +R++G + +D+ VPNRFE GYGL Sbjct: 61 EAAAQRLATAIEQRQKILIIADYDADGATACSVGIKGLRNMG-AVVDFFVPNRFEHGYGL 119 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 +PE+ D A GAQLI+TVDNGISS GV A++LGI +VTDHH G ++P I+NP Sbjct: 120 TPELADIAAQMGAQLILTVDNGISSQEGVARAKALGIDTVVTDHHTAGSSIPDC-IIVNP 178 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 N R C+FPSKSLAGVGV FY+++ALR LR +G+F + + PNL LLDLVALGTVADV Sbjct: 179 NQRGCDFPSKSLAGVGVIFYVLMALRAQLRSRGYFQQAGLPEPNLGNLLDLVALGTVADV 238 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 VPLD NNRIL QG+ RIRAGK GI+AL E+A RD +K D+GFALGPR+NAAGRL Sbjct: 239 VPLDHNNRILVSQGLKRIRAGKMSHGIRALFEIARRDTRKAQPFDMGFALGPRINAAGRL 298 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 DDMS+G++ LL DN+ A+ +A+EL+ LNQTR+EIEQGM E L LC + S T Sbjct: 299 DDMSIGISCLLSDNLPYAQQIASELNQLNQTRQEIEQGMLQEVLALCPNVLPSSQTT--- 355 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 L++YH ++HQGVVGI+ASR+K+RF+RPV FAP+ DG L+GSGRSI GLH+RDAL+ + Sbjct: 356 LSVYHEQFHQGVVGIVASRLKDRFYRPVFVFAPSDDGELRGSGRSIAGLHLRDALDMVAK 415 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 P M++KFGGHAMAAGL+L + +F F Q F ++V ++ +L ++DG L +++ Sbjct: 416 RCPDMIVKFGGHAMAAGLTLRKHRFDEFCQVFEDVVQGLVNEDILSQTYLTDGSLHGSDI 475 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAF 535 T+E A L+ WGQ FP P F F +++Q+ +G+ +H K ++ G + + + Sbjct: 476 TLEQADLISR-QVWGQNFPPPSFSDEFDVVRQQFMGKEQKHKKAWLQ--KDGYEFEAMFW 532 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + L ++++ Y+ +NE+ GN+ LQ+ +D Sbjct: 533 RCEDEL-----PNKIRIVYRPTVNEWNGNQELQLYVDYW 566 >UniRef50_B0VEZ1 Putative ssDNA exonuclease, 5'--> 3'-specific n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VEZ1_9BACT Length = 574 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 173/587 (29%), Positives = 294/587 (50%), Gaps = 30/587 (5%) Query: 1 MKQQIQLRRRE------VDETADLPAELPPLLRRLYASRGVRSA----QELERSVKGMLP 50 M ++ + E +LP L+ L +G+++ + + S+ + Sbjct: 2 MNKKWLIPSPPGKEINPEIEKLSAEFKLPRLVAELLYRKGIKTVNSAQEFFKPSMDNLYD 61 Query: 51 WQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNR 110 +EKAV+ + A +I + GD+D DG T+TAL L ++ +G +NID+ +P+R Sbjct: 62 PYLFPDMEKAVQRILRAIDSKEKITIYGDYDVDGTTATALLYLGLKRIG-ANIDFYIPHR 120 Query: 111 FEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA 170 DGYGLS +D G+ LI++VD G+++ + S+G+ +I+TDHH P D LP Sbjct: 121 MIDGYGLSLGSLDALRENGSSLIISVDCGVNAIEEINAINSMGMEIIITDHHNPKDELPP 180 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A AIINP L +P + LAGVGVA+ L++A+ L + N + +DLVA Sbjct: 181 AFAIINPKLPGTKYPYEHLAGVGVAYKLLMAIYNNLGID--------SAENKLKYMDLVA 232 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPR 290 +GT+AD+VPL + NRI G+ + K G+ AL++++ + + L +D+ F + PR Sbjct: 233 VGTIADIVPLTSENRIFASIGLQHLIE-KKNLGLNALVQISGLNQKNLDTTDIVFGIAPR 291 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NAAGR+ SV V LL+ + ++ LA ++ N R++ +Q EA + EK + Sbjct: 292 INAAGRMGSASVSVELLISTDEAKSMELAEIIEHQNSLRQQEDQKTFQEACDIIEK-KYK 350 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRD 410 + + +WH GV+GI+AS++ E+++RPVI + DG GSGRS+ + + Sbjct: 351 DLQQTSCMVVSSDDWHPGVIGIVASKLVEKYYRPVIMISF-KDGFGSGSGRSVADFDLFE 409 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 AL++ + FGGH A GL++ ++ F+ V+E L +Q + D Sbjct: 410 ALKQ----TEHNLHSFGGHKYAVGLTIYQEYLDRFENELTRFVSENLRLEQIQPPLQIDA 465 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRL--VGERHLKVMVEPVGGGP 528 + + + L P+G P+F + VG HLK+ V G Sbjct: 466 EIELYNINNTLLDALEHFAPFGPDNTRPVFMTRNVTIASYPYNVGRNHLKLKVV--KDGI 523 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + I +N+ L ++ +AY L+ N F N ++Q + ++ Sbjct: 524 YFNLIGYNLGDYLPLLKKNGKLDIAYTLEYNRFGNNLTIQGKLKDLQ 570 >UniRef50_A0L8H3 Exonuclease RecJ n=2 Tax=Proteobacteria RepID=A0L8H3_MAGSM Length = 592 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 197/585 (33%), Positives = 307/585 (52%), Gaps = 21/585 (3%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVR----SAQELERSVKGMLPWQQLSGVE 58 ++ + E L L L ASR + + Q L +K + L + Sbjct: 14 WTLRCQPDEGHNRVVQALGLSHYLAPLLASRKLCGAGETRQFLAPRLKDLADPYDLLDMR 73 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 AVE L A G +I V GD+D DGATS+AL + LG + + +PNR +GYG S Sbjct: 74 VAVERLAEALERGEKIAVFGDYDVDGATSSALLMRYFHELGVA-LRVYIPNRLTEGYGPS 132 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 + G L++TVD GI++ ++ A++LG+ VI+TDHH + LP A A+INPN Sbjct: 133 VGAMRTLAEEGVSLVITVDCGITAFEPLQEAKALGLAVIITDHHQAREQLPEALAVINPN 192 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 +D FP K LAGVGVAFYL++AL LR++GWF++ P L LLDLVA+GTVADV Sbjct: 193 RQDEPFPYKELAGVGVAFYLVMALNRLLRERGWFNK-GRQEPVLKPLLDLVAVGTVADVA 251 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR--DAQKLAASDLGFALGPRLNAAGR 296 + NR L G+ + + PG+ AL++V + ++L ++ +GF LGPRLNA GR Sbjct: 252 GMRGLNRALVTTGLHVLSE-RSNPGLAALMQVVGIGEEVKELTSTHIGFQLGPRLNAGGR 310 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L ++G LL C + +A +A LDA N+ R+EIE+ + +A+ E ++ L Sbjct: 311 LGQGALGYQLLSCHDQAQALPIAQTLDASNKERQEIERTLLKQAMDQVEA--ENQPILRR 368 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERL 415 GL + WH GV+GI+ASR+ +++ +P + A + G KGSGRSI G+++ A+E Sbjct: 369 GLVVAGEGWHAGVIGIVASRLCDKYSKPALVIAIDAETGVGKGSGRSIPGINLLAAIEAG 428 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + FGGH +AAGL+++ +K F + F + +T S + D L Sbjct: 429 AA----HLEHFGGHKVAAGLTIQREKIPAFMEAFEDHLTRHYQASAFFPRLTVDAELPLD 484 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 E+ VA+ ++ P+G PEP+F L +++ ERHL + + ++ I Sbjct: 485 ELDFAVARQIQSFSPFGPGNPEPIFILPRVSLRGIKVLKERHLAMSIVCPRTHQQIEAIG 544 Query: 535 FNV--DTALWPDNGVR--EVQLAYKLDINEFRGNRSLQIIIDNIW 575 F + + +A KL I +RG +++ + ++ Sbjct: 545 FRMAPGPIVDAIQAGDVAVWDVAGKLTIETWRGREKMKLQLSDVR 589 >UniRef50_D2MJC9 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJC9_9BACT Length = 582 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 182/579 (31%), Positives = 293/579 (50%), Gaps = 28/579 (4%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM----LPWQQLSGVE 58 +++ +E L PL + RGV ++ + + L +E Sbjct: 24 WRVRSVEQERVAALAGVLGLSPLTATVLCGRGVVEPEQAKAWLASSGGSTHDPFALPDME 83 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 +AV+ L+ A + RI GD+D DG +T+L +L RS+G + + +P+R E+GYGL Sbjct: 84 RAVDRLHLAIQRCERICFYGDYDVDGMAATSLHLLFWRSVG-AQAEVYIPDRQEEGYGLH 142 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 + + G L++T D G +S+ +E ARSLG+ VIVTDHH +P A INP Sbjct: 143 ESAIRKLGHGGVSLLLTADCGTTSYREIEVARSLGMDVIVTDHHQLQSRMPEPVAFINPY 202 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 D +P + L G+A+ ++ A A + DLVAL ++AD+V Sbjct: 203 RPDSVYPFQGLCSGGLAYKVVEAYARKY---------GAADVPVESFRDLVALSSIADMV 253 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NR+L G++++ G R GI+AL + + +A +GF + PRLNAAGRL Sbjct: 254 PLRDENRVLVRDGLAQVAQG-NRCGIRALTQDLGLNGTC-SAGTIGFRVAPRLNAAGRLA 311 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 +GV LL D+ A LA +L+ LN+ R+EIE+ M EA+ E ++ P + Sbjct: 312 HAGLGVRLLTADSEPVALQLAQQLEELNRRRREIEEAMTREAIAQVEAGDQ-----PHAI 366 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + WH GVVGI+A+R+ ER+HRP A DG KGS RS+ G + AL + Sbjct: 367 VVGAEGWHSGVVGIVAARLVERYHRPAAVVAFDRDGLGKGSVRSVAGFDVCQALRQC--- 423 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 ++ FGGH MAAGL++ + + F +RFGE V +D SL + D ++ A++ Sbjct: 424 -QRDLVAFGGHPMAAGLTVRREAYADFSRRFGEGVEGAMDDSLKVPTLDVDAAVALADVQ 482 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 + L P+G PEP +L++++VG+ HLK++V G L+ I F + Sbjct: 483 FPFVRELERLQPFGMGNPEPTLMSRGVSVLEKKVVGDNHLKLVVRQP-GSVPLESIGFRM 541 Query: 538 DTALWPDNGV-REVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + + ++NE++G+ +Q+ + ++ Sbjct: 542 GGLAHAIDAGHGRIDAVFTPELNEWKGSTRIQLRLRDVR 580 >UniRef50_C0N9A7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9A7_9GAMM Length = 585 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 262/577 (45%), Positives = 389/577 (67%), Gaps = 6/577 (1%) Query: 4 QIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEI 63 Q+++++R+ DLP P +RR+ A+RG++ A++L + + QQ+ G+++AV I Sbjct: 3 QVEIKQRDSSGWQDLPDAWPDCIRRIMAARGIKQAEQLFFELANLPRPQQMLGMDQAVAI 62 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 + A ++ ++ VV DFD+DGATS AL++ +R++G +I+++VPNRF GYGL+PE++D Sbjct: 63 MVEALQKQWKVTVVADFDSDGATSCALAIRGLRAMGLQHINFIVPNRFIHGYGLTPELLD 122 Query: 124 QAHA--RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 L++TVDNGI++ AGVE A+ GI V+VTDHHL G+ LP A+AI+NPN Sbjct: 123 DIPNTTEQPDLLLTVDNGIAAVAGVEAAQQRGIKVLVTDHHLAGEVLPTADAIVNPNQAG 182 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 FPSK+LAGVGV FYL+L LR LR+Q WF ++N+ P L++ LD+VALGTVADVVPLD Sbjct: 183 DAFPSKNLAGVGVCFYLLLGLRQALREQDWFMQQNLDEPKLSDWLDIVALGTVADVVPLD 242 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NR L G+ RIR+G+ GI+AL ++A R+ KL + DL F++ PRLNAAGR++DM Sbjct: 243 KLNRTLVDIGLKRIRSGRACAGIRALSQIAGRETDKLVSPDLAFSIAPRLNAAGRMEDMG 302 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 +G+ LLL D +A +A +LD +N R+ +EQ MQ +ALT+ +KL T+ G +Y Sbjct: 303 LGINLLLTDEWQDALSIAAQLDQINLERRGVEQQMQQDALTMLDKLSLETATVAPGYCLY 362 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 PEWHQGV+G+LASRIKE+ HRPVIAFAP +G +KGS RSI G+H+RD L R+ P Sbjct: 363 DPEWHQGVIGLLASRIKEKMHRPVIAFAPGNEGEIKGSARSIAGIHIRDVLARIAAQNPT 422 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 M+ +FGGHAMAAGL+L+ + F+ F ++T+ +D ++ Q ++ +DG LS E+T+++ Sbjct: 423 MLQRFGGHAMAAGLTLKLNDLDNFRVAFEAVLTDSVDAAVYQQQLATDGELSHHEITLQL 482 Query: 482 AQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDGIAFNVDT 539 A+ L A PWGQ F EP F G F + RLVG+ HL++ ++ G + +AF Sbjct: 483 AEQLPQAAPWGQGFEEPRFHGLFDVKSWRLVGQEADHLRLSLQL-GDSREITAMAFRQQK 541 Query: 540 ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 W ++ + Y+L +NEFR +++Q +ID++ P Sbjct: 542 PEW-LERGSKILIRYRLAVNEFRATKTIQFLIDDLLP 577 >UniRef50_UPI0000E0E6D4 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E6D4 Length = 593 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 279/554 (50%), Positives = 387/554 (69%), Gaps = 4/554 (0%) Query: 24 PLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDAD 83 +L ++ RG+ S EL K +L + QL+G++ AVE+L+ + +I+++GDFDAD Sbjct: 40 DILSAIFLHRGIESLDELATGAKDLLHFNQLNGIQAAVELLFTGLQSQQKIVIIGDFDAD 99 Query: 84 GATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR-GAQLIVTVDNGISS 142 GATSTAL +LA+R LG ++ YLVPNRF+ GYGLSPE+VD A + +++TVDNGI+ Sbjct: 100 GATSTALCMLALRDLGFHSVQYLVPNRFDFGYGLSPEIVDVAIEQYAPDILLTVDNGIAC 159 Query: 143 HAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLAL 202 HAGV HA++ G+ VI+TDHHLPG++LP A+AI+NPN C F SK LAGVGVAFY++ A Sbjct: 160 HAGVAHAKAHGLKVIITDHHLPGESLPNADAIVNPNQHYCEFGSKHLAGVGVAFYVLSAF 219 Query: 203 RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRP 262 +T L GWF + A PNLA+ LD+VALGTVADVV LD NNRI +QG+ RIRAG+CRP Sbjct: 220 KTHLLSVGWFPDPARA-PNLAQYLDIVALGTVADVVKLDKNNRIFVYQGVQRIRAGRCRP 278 Query: 263 GIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 322 GI+ALL+VA++ K+ A+DLGF LGPRLNAAGRL+DM+ G+ LL D+ AR +A+ L Sbjct: 279 GIRALLDVASKAPDKVTATDLGFILGPRLNAAGRLEDMAQGIECLLADDYDTARGMAHTL 338 Query: 323 DALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFH 382 D+LN+ R+EIE M+ +A ++ TLP GL +Y ++HQGV+GILA RIKE+ + Sbjct: 339 DSLNRQRREIEGQMREQAEAALASIQLDDATLPDGLVLYDADFHQGVIGILAGRIKEQHY 398 Query: 383 RPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKF 442 RP + FA D LKGS RSI G+H+RD + ++T +P ++ KFGGHAMAAGLS+ Sbjct: 399 RPTVVFAQQDDHELKGSARSIPGVHIRDVFDEINTRHPHIIKKFGGHAMAAGLSINVQYI 458 Query: 443 KLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG 502 F F ++ +++ + +++SDG LS MT++ A L AGPWGQ F EP+FD Sbjct: 459 DEFTTAFHSVLAKYMAQVPNEAQILSDGQLSSRNMTLDFAHTLVQAGPWGQGFEEPIFDN 518 Query: 503 HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFR 562 F L+ QR+VG++HLK++++ +D IAFN+D WPD V+ V +AYKL+INEFR Sbjct: 519 IFELVSQRVVGQKHLKMVLKLDQ--VTVDAIAFNIDVNTWPDLNVKRVHVAYKLNINEFR 576 Query: 563 GNRSLQIIIDNIWP 576 G +S+Q ++ P Sbjct: 577 GQQSVQCMVVKFGP 590 >UniRef50_A7VWX6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWX6_9CLOT Length = 710 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 184/582 (31%), Positives = 302/582 (51%), Gaps = 28/582 (4%) Query: 1 MKQQIQLR-RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK---GMLPWQQLSG 56 MKQ + +E+ +T L L + RG S +++E + L Sbjct: 21 MKQWVTAPLDKEIAKTIAQTYGLSQFLSMMLVIRGFHSKEQIESFLNTPDSCFDPFLLKD 80 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++ AVE ++ A + +I + GD+DADG TST+L + SLG +++ Y +P R +GYG Sbjct: 81 MDLAVERIHQALDQFEKICIYGDYDADGVTSTSLLYSYLESLG-ADVMYYIPERESEGYG 139 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH-LPGDTLPAAEAII 175 ++ + V + G +LI+TVDNGI++ VE+A SL I +VTDHH GD LP A A++ Sbjct: 140 MNIDAVRKLSELGVRLIITVDNGIAAAREVEYANSLHIDTVVTDHHQQQGDILPPAVAVV 199 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P+ DC+ P K++AGVGV F L+ AL + L DL A+GT+ Sbjct: 200 DPHRLDCDCPFKNMAGVGVTFQLISALEG---------KDGGFSTLLENYSDLAAIGTIG 250 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL+ +NR+L G++++ R GI+AL+ + + +KL ++ + F+L PR+NAAG Sbjct: 251 DIVPLEKDNRVLVKHGLAQLSRT-DRLGIQALITESGLEGKKLTSTAVAFSLVPRINAAG 309 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RL V LLL + EA LA E+ NQ R++IE + ++ + Sbjct: 310 RLGSSRQAVKLLLSEYPDEAEDLAREIGEQNQQRQKIEGDIALQIEEYLQA--HPERRFD 367 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 L + WH GVVGI+ASR+ E++ +P + + G+ +GSGRS++G + DA+ Sbjct: 368 RILVVDGENWHAGVVGIVASRVVEKYGKPCVVISREGE-LSRGSGRSVEGFSLSDAVYAC 426 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 +++FGGH MAAG++++ DK F+ + P + +++ D L P Sbjct: 427 RE----HLVRFGGHPMAAGITIKTDKIDDFRLAINAYAAQR-HPQMPYPKLLLDCKLRPQ 481 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGE-RHLKVMVEPVGGGPLLDGI 533 +++++ + L P+G P PLF L G +HL++ + + + Sbjct: 482 VLSLDIVEELTLLEPFGTGNPAPLFGLYSMTLTGITPCGNRKHLRLAFQREK--VKITAM 539 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 F+V +P + LA L+ NE+RG SL I I ++ Sbjct: 540 RFSVTPEEFPYQPGDILDLAVTLERNEYRGEASLSIHIRDLK 581 >UniRef50_D1BND6 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Veillonella RepID=D1BND6_VEIPT Length = 661 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 179/582 (30%), Positives = 294/582 (50%), Gaps = 28/582 (4%) Query: 2 KQQIQLR--RREVDETADLPAELPPLLRRLYASRGVRSAQ---ELERSVKGMLPWQQLSG 56 K++ +L RE + + P++ +L +R + + L+ ++ +L L Sbjct: 5 KKRWRLCEGDREKENILIRELGVNPIVAKLMVNRHIDVDEGRRFLQGTLSDLLDPFTLKD 64 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++ AV ++ I++ GD+D DG T+T++ ++ LG +++ Y +P R +GYG Sbjct: 65 MDVAVSLVLETIESHKPIVIYGDYDVDGITATSVLYRFLKKLG-ADVTYYIPERQSEGYG 123 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ E + RG L++TVD GISS+ VE R I +I+TDHH D +P A+A+IN Sbjct: 124 LNLEALKHLIERGTDLVITVDCGISSYDIVEAVRDR-INMIITDHHTAPDVIPRAKAVIN 182 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 +DC + K+L+GVGVAF L AL + + D+ LD+VALGTVAD Sbjct: 183 HKQKDCPYKDKNLSGVGVAFKLCQALWLTKHGEWYLDD-----------LDIVALGTVAD 231 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 VVPL NRI+ G+ ++ GI L++VA + + + +G+ L PRLNAAGR Sbjct: 232 VVPLVGENRIIVKSGLEKMN-SYPNLGINKLIDVAGLHERTITSGHIGYTLAPRLNAAGR 290 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + + V LL+ D+ A +A EL+ N+ R+E+E+ + A D + Sbjct: 291 VTHATRAVELLVTDDADIAEAIAEELNETNRERQELERNIHELARIDVANQGHKADYVT- 349 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 + EWH GV+GI+ASR+ E F++P + + DG KGS RSI G ++ DAL+ Sbjct: 350 --IVAGEEWHPGVIGIVASRLVEEFYKPTLVISI-HDGVGKGSCRSIDGFNIYDALKSC- 405 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 ++L+FGGH+ AAG S++ ++ + R + E + V D L + Sbjct: 406 ---EDILLQFGGHSAAAGFSIDANRIDELRYRLTKYCKEVVTAEEYIPVVAIDAELPVDD 462 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 + +++ + D P+G P+F + L+G+ V LD IA+ Sbjct: 463 IDVDIIDRVSDLEPYGMANSTPVFAIMEATVQDIMLMGQLKNHCKVIFATSNGTLDAIAW 522 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 N V++A+ L NE++G S Q++I I P+ Sbjct: 523 NCPDLFRSIFVGTVVKVAFSLQKNEWQGLVSPQLMIQAIEPL 564 >UniRef50_C6VR18 Single-strand DNA-specific exonuclease RecJ n=6 Tax=Lactobacillus RepID=C6VR18_LACPJ Length = 778 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 173/584 (29%), Positives = 283/584 (48%), Gaps = 35/584 (5%) Query: 2 KQQIQLR-----RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQ 52 K++ R + A + PL+ RL RG+ +A+E + +L Sbjct: 5 KKKWVPRLTTAVDEADVDKLAEAASVTPLVARLLIMRGINTAEEAAPFLHADQQPLLDPT 64 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 + +EKAV+ + A G +I + GD+DADG TST++ + +G +N++Y +P+RF+ Sbjct: 65 NMHDMEKAVDRIQEAIIAGDQITIYGDYDADGLTSTSIMYETLDQIG-ANVNYYIPDRFK 123 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 DGYG + D+ A G +L VTVDNG++ +A + + GI V+VTDHH LP A Sbjct: 124 DGYGPNQAAFDRLIAAGTKLFVTVDNGVAGNAVINQVQEQGIDVVVTDHHELPTELPHAY 183 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 AI++P + ++P L+G GVAF + AL + ++ A+G Sbjct: 184 AIVHPRHPEGSYPFGGLSGAGVAFKVATALLEEVPEELLDL---------------AAIG 228 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 292 TVAD+V L NR L G+ ++ RPG+ AL++ A KL +++GF + PRLN Sbjct: 229 TVADLVSLTGENRTLVTLGLKVLQQTT-RPGLAALIQEAGLIPDKLTETNIGFGIAPRLN 287 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 A GRL GV LL + A LA +++ LN+ R+ + + + A+ + + Sbjct: 288 ALGRLQSAQSGVELLTTLDDERATALAKQVNQLNEKRQGLVKTISASAIEQAQT---PEN 344 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 L + WH+GV+GI+AS + E +P + DG LKGSGRS++ ++ A+ Sbjct: 345 EARQTLVITGHGWHEGVLGIVASHVVETTGKPTLVLNEDDDGRLKGSGRSVEAYNLFAAI 404 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 + + ++ FGGH MA GL++ D+ ++ Q + DG L Sbjct: 405 DPVRES----LVAFGGHHMAVGLTVMADQLATLKEAMEVAAVSQQLADNAQVSLPIDGTL 460 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLD 531 AE T+ ++ P+G P PLF + R +G + ++ G +D Sbjct: 461 PLAEATLATLADIQALAPFGTDNPAPLFELVPTTVPHARAIGSDQQHLKLQLGDGTNTID 520 Query: 532 GIAFNVDTALWPDN-GVREVQLAYKLDINEFRGNRSLQIIIDNI 574 I F++ TAL +V L +L N + G QI++ +I Sbjct: 521 AIGFSMGTALPAIQASPTDVTLVGELSENTWNGQTKPQIMVKDI 564 >UniRef50_A9IQX3 Single-stranded-DNA-specific exonuclease n=163 Tax=cellular organisms RepID=A9IQX3_BORPD Length = 695 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 265/566 (46%), Positives = 357/566 (63%), Gaps = 17/566 (3%) Query: 11 EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFRE 70 A + PLL RL+A+RGV + + +LP L+ V+ A IL +A + Sbjct: 142 PDACRTLEAAGIHPLLARLWAARGVTHPDQTRLAWPALLPPAGLTHVDHAARILADAIAQ 201 Query: 71 GTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA---HA 127 G R+++V D+D DGAT+ A+ + A+R+ G +N+D+LVPNRFE GYGLSP VVD A HA Sbjct: 202 GKRLLIVADYDCDGATACAVGLRALRAFG-ANVDFLVPNRFETGYGLSPAVVDLACAHHA 260 Query: 128 RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSK 187 LI+TVDNGI+S GV A + GI V+VTDHHLPGDTLP A AI+NPN C FPSK Sbjct: 261 GKPDLIITVDNGIASVDGVAAANAAGIGVVVTDHHLPGDTLPDALAIVNPNQPGCGFPSK 320 Query: 188 SLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRIL 247 +LAGVGV FYLMLALR LR +G + L L DLVALGTVADVV LDANNR+L Sbjct: 321 NLAGVGVIFYLMLALRAELRRRGVYPPDGGPR--LDALSDLVALGTVADVVKLDANNRLL 378 Query: 248 TWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALL 307 QG+ R+RAG+ +PG++AL VA R+ + DLGFALGPR+NAAGRL DMS+G+A L Sbjct: 379 VTQGLQRMRAGRMQPGLRALFAVAAREPRSACGFDLGFALGPRINAAGRLADMSLGIACL 438 Query: 308 LCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQ 367 D+ +A +A +LD +N+ R+ IE M+ +A+ ++ + + ++ P WHQ Sbjct: 439 TTDDEAQALDMARQLDQINRERRGIEAEMREQAMA---AMDAAGSANGATVCVFDPSWHQ 495 Query: 368 GVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 GVVG++ASR+KE++ RP +AFAPAGD L+GSGRSI +H+RD L+ + +PG++ KFG Sbjct: 496 GVVGLVASRLKEKYWRPTLAFAPAGDDELRGSGRSIPDVHLRDVLDLVSKRHPGLIRKFG 555 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRD 487 GHAMAAGL+L D F +F F V E + + +DG L +VA LL+ Sbjct: 556 GHAMAAGLTLGRDDFSVFGPAFDAAVRELTGRDRFEPLLETDGSLESGYANADVATLLQQ 615 Query: 488 AGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGV 547 WG F PLF F + QRLVGE+HLK+ +E G D I F D +L Sbjct: 616 -QVWGAGFAPPLFLDEFTVRNQRLVGEKHLKLSLE--RGHQRFDAIWFGHDQSL-----P 667 Query: 548 REVQLAYKLDINEFRGNRSLQIIIDN 573 +Q AY+L+ N + G S Q++I++ Sbjct: 668 ERIQAAYRLEPNVWNGMVSAQLVIEH 693 >UniRef50_C0XKS9 Exonuclease RecJ n=3 Tax=Lactobacillus RepID=C0XKS9_LACHI Length = 776 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 164/589 (27%), Positives = 293/589 (49%), Gaps = 36/589 (6%) Query: 2 KQQIQLRR---REVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 K + Q+++ + + ++ PL+ + RGV + + + + + Sbjct: 5 KFKWQIKQNTDPQQVQALSEALKIDPLIASILLQRGVSTEEAAQDFLTPSSKDFHDPYLM 64 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++K + + +A +I V GD+DADG TST + + LG +N+DY +PNRF DG Sbjct: 65 HDMKKGIARIQHAVENEEQITVYGDYDADGITSTTIMYEVLNDLG-ANVDYYIPNRFSDG 123 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + + + G LI+TVDNG++ + ++ A SL V+VTDHH + LP A AI Sbjct: 124 YGPNVDAFKKIINNGTTLIITVDNGVAGNEAIDVANSLHCDVLVTDHHSLPEVLPNAYAI 183 Query: 175 INP---NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 I+P N +P L+G GVA + AL L +L+D+ A+ Sbjct: 184 IHPRVKNQEGQAYPFGDLSGAGVALKVAQALMEDLP---------------IDLIDVAAI 228 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRL 291 GTVAD+V L NR + G++ IR + RPG+ AL++ A+ D K D+GF + PRL Sbjct: 229 GTVADIVSLKDENRAIVKFGLNAIRNTQ-RPGLLALIKAADIDLSKFDEQDIGFGIAPRL 287 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 N+ GR+DD ++GV LL + +A LA D N +RK + +A+ + E + Sbjct: 288 NSLGRIDDANIGVELLSTFDDQKATELAEFADHQNDSRKSLVDEFYQQAVQMVESSGDAE 347 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRD 410 + L + +WHQGV+GI+AS++ E++ RP I G+ +KGSGRS++ + Sbjct: 348 NR--STLVVVGDDWHQGVLGIVASKLVEKYGRPTIVLTSQHGNDQVKGSGRSVESFDLFS 405 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 A++ + G FGGH A GL++ +DK + + + + + + Sbjct: 406 AIDPIRDQTIG----FGGHHSAIGLTINKDKISVLKDQLEKAAGNQELDLSQKPTLDIAA 461 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPL 529 +S ++ + + L P+GQ P+P+F+ + +L+ + +G+ + V Sbjct: 462 KISADQIDNQFIKNLNVLAPFGQDNPKPVFEIEYDQLIDVKTMGKTGDHLRFSLVKNKSR 521 Query: 530 LDGIAFNVDTALWPDNGVR-EVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 L +AF A + ++++ +++ N + + ++Q+++ ++ I Sbjct: 522 LTAVAFGRGAAAGQLSNGSASIKVSGEINENTWNNHTTIQLMVSDLKQI 570 >UniRef50_Q11NW2 Single-strand DNA specific exonuclease n=13 Tax=Bacteroidetes RepID=Q11NW2_CYTH3 Length = 574 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 170/584 (29%), Positives = 300/584 (51%), Gaps = 28/584 (4%) Query: 2 KQQIQ--LRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 K+ I L +E + + + + R + + +E + + + + Sbjct: 6 KRWITKTLPAQEKARSLAEALNINAYISAMLVQRNIETFEEAKNFFRPSLSQLHDPFLMR 65 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 +EKAV L A RI++ GD+D DG TS ++ +++ +NI+Y +P+R+++GY Sbjct: 66 DMEKAVTRLMQAIAGNERILIYGDYDVDGTTSVSVFYGFLKNY-YTNIEYYIPDRYKEGY 124 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G+S ++ A A LIV++D GI + V +A S GI I+ DHH PG+ LP A AI+ Sbjct: 125 GVSKAGIEYARDTNATLIVSLDCGIRAVEMVAYANSFGIDFIICDHHNPGNELPDAVAIL 184 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P +C++P K L+G GV F L+ AL T + L E +DL+A+ + Sbjct: 185 DPKQNNCSYPYKELSGCGVGFKLLQALCTR---------AGYSSELLFEQIDLLAISICS 235 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VP+ NRILT+ G+ ++ RPGI+A+++V+ + + + + F +GPR+NAAG Sbjct: 236 DIVPITGENRILTYFGLQKLNESP-RPGIQAIVDVSGL-KKAIDVNTVVFTIGPRINAAG 293 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+D V LLL +N +A A ++ N R+E ++ + EAL + + + Sbjct: 294 RIDHAFAAVELLLAENKTDAANFAANINDHNLVRREFDETITGEALGMIQS--NANAATA 351 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 +Y +WH+GV+GI+ASR E +HRP I + +G + GS RS+ + +A+++ Sbjct: 352 SSTVLYKNDWHKGVIGIVASRCIEHYHRPTIILTQS-NGKVAGSARSVPDYDLYEAIDKC 410 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L +++FGGH AAGL++EE + F+ +F E+V+ + L + D L Sbjct: 411 SDL----LIQFGGHKYAAGLTMEEKNIEAFRTKFEEVVSATIRKEQLIPMISIDLELPLN 466 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ--QRLVGERHLKVMVEPVGGGPLLDGI 533 ++ ++R GP+G +P+F + R++ ++HLK+ + I Sbjct: 467 QIDSRFFNIVRQMGPFGPQNMQPIFVSRNVMDDGTSRILKDKHLKLNIRQ-QDSVTYPAI 525 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 + + + Y L+ NEF G +++Q++I +I I Sbjct: 526 GWQMHAFYDRIKNKEPFDICYSLEENEFNGKKTIQLMIRDIQFI 569 >UniRef50_Q038P0 Exonuclease RecJ n=8 Tax=Lactobacillus RepID=Q038P0_LACC3 Length = 764 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 180/582 (30%), Positives = 293/582 (50%), Gaps = 37/582 (6%) Query: 2 KQQIQLRRRE---VDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 + Q QL + + +PP L L RG+ + + V + L Sbjct: 3 QYQWQLAPQPAAADEHALSETLNVPPFLATLLLQRGINDQADYDAFVHPDTSRLHDPFAL 62 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++KAV + A + +I + GD+D DG TS+A+ + ++SLG ++ D +P+RF DG Sbjct: 63 HDMDKAVARILKAIEQNEKITIYGDYDVDGLTSSAIMLETLQSLG-ADPDVFIPDRFTDG 121 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + EV G QL++TVDNG++ A ++ A++ G+ V+VTDHH LP A A+ Sbjct: 122 YGPNAEVYAYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPAKLPHAVAV 181 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 ++P D ++P L+G GVAF + AL E +DL ALGT+ Sbjct: 182 VHPRHPDGDYPFGDLSGAGVAFKVATALLGE---------------PPLESVDLAALGTI 226 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+V L NR++ G+ I+ + R G+ A+L+ A + + + +GF +GPRLNA Sbjct: 227 ADLVSLTDENRVIAQLGLKMIQ-TQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNAL 285 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ D + GV LL A LA ++ LNQ R+ + + EALT+ + + Sbjct: 286 GRMGDANPGVTLLTTFEDDVAAELAEQVGKLNQERQGLVAKIAQEALTMAQA---PENQA 342 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG-TLKGSGRSIQGLHMRDALE 413 L + WH+GVVGI+AS++ E +P + A DG T KGSGRSI+ H+ ALE Sbjct: 343 AKTLLLASKGWHEGVVGIVASKVVEATGKPTLIMNIADDGETAKGSGRSIEAYHLFKALE 402 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 M+ FGGH MA GL+ + + L ++ + + L Sbjct: 403 PAKE----HMVHFGGHHMAVGLTAKTTDLPAIHAQMEAAAATML-KTVPKPTLPITTRLE 457 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLL-QQRLVGERHLKVMVEPVGGGPLLDG 532 A++T++ QL+R P+GQ PEP+F +++ + +G+ + + + G ++ Sbjct: 458 DADLTLDHYQLIRQLAPFGQGNPEPVFSVRPQVIQNVKQIGKENNHLRFQIDQG---INV 514 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 I F A + V+LA +LD N ++G+ SLQ+++ + Sbjct: 515 IGFGYGDAAETLATAQAVKLAVQLDQNTWQGHTSLQLMLKDY 556 >UniRef50_A5UUU1 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Chloroflexaceae RepID=A5UUU1_ROSS1 Length = 572 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 183/580 (31%), Positives = 292/580 (50%), Gaps = 26/580 (4%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG---MLPWQQLSGVE 58 ++ + + A A LPPL+ L RGVRS + + + G+E Sbjct: 10 NKRWHILETPPEFIAACRA-LPPLIAALLYQRGVRSDAAMREFFSADYRLNDPFSMRGME 68 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 AV+ + A + + V GD+D DG T+ L V A+ ++G I VP+R +GYGL+ Sbjct: 69 TAVQRIAAAIHDHELMAVYGDYDTDGVTAVTLLVQAISAMGGL-ILPYVPHRIREGYGLN 127 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 E +D G +L++TVD GIS+ HAR++GI +I+TDHH P LP A AIINP Sbjct: 128 IEAIDALAREGVRLLITVDCGISNVREAAHARAVGIDLIITDHHHPPARLPDAVAIINPR 187 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 C++P K L GVG+AF L+ AL + +LLD+VALGTV D+ Sbjct: 188 QPGCSYPFKHLVGVGIAFQLVRALARR---------GFRSTLQKDDLLDVVALGTVTDMG 238 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NR+L G+ + A + RPG++AL++ A ++ ++D+ F LGPRLNA+GR+D Sbjct: 239 PLIGENRVLVTHGLKALNAAQ-RPGVRALIQAAGMTPGRVTSTDISFGLGPRLNASGRID 297 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 + + LLL + A+ LA+EL+ N+ R+E+ + + +A + L + + Sbjct: 298 NARLSYELLLAEEFETAQRLAHELNLQNRQRQELSKTVHEQASAQIQALGKQNQ---RLI 354 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + ++ GVVG++A+R+ E + RP + G+ +GS RS+ G + DAL L Sbjct: 355 ILDGTDYPAGVVGLVAARLVEEYGRPTVLI-ERGEQWSRGSARSVPGFSIIDALTDCADL 413 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 + +FGGH AAG ++ D+ + R E L LL + D + PA ++ Sbjct: 414 FE----RFGGHTEAAGFTIATDRLPALEDRLLRYAAEHLSDDLLMPGITIDAEVPPASLS 469 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAF 535 E+ L P+G P+P+ ++ G +HLK+ + G D IAF Sbjct: 470 YELLGELAKLEPFGHGNPQPVLMSRRLQVTGAWPRGSEGQHLKLRLVGADGSGPFDAIAF 529 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 R + + Y L+ +E+ G+ SLQ+ + + Sbjct: 530 RFGHLARYFEQPRWIDIVYTLEADEWNGSPSLQLNVKDFR 569 >UniRef50_B2RMC6 Single-stranded-DNA-specific exonuclease n=53 Tax=Bacteria RepID=B2RMC6_PORG3 Length = 584 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 189/593 (31%), Positives = 312/593 (52%), Gaps = 37/593 (6%) Query: 1 MKQQIQLRR-----REVDETADLPAELPPLLRRLYASRGVRSAQELERS----VKGMLPW 51 M L R + L P++ L A RG+ S +E +R ++ + Sbjct: 1 MNYNWNLEPFTAEERSLGTIFCRELRLAPVVGCLLARRGIASVEEAKRFFRPRLEDLHDP 60 Query: 52 QQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCS--NIDYLVPN 109 + ++KAV L A +I++ GD+D DG T+ AL +R+ GCS +DY +P+ Sbjct: 61 FLMKDMDKAVARLNRAVGRKEKIMIYGDYDVDGTTAVALVYKYLRATGCSETQLDYYIPD 120 Query: 110 RFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLP 169 R+++GYG+S +D AH+ G +LI+ +D GI + V +A+SL I I+ DHH P +TLP Sbjct: 121 RYDEGYGISYRGIDLAHSLGTKLIIVLDCGIKAVEKVAYAKSLDIDFIICDHHNPDETLP 180 Query: 170 AAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLV 229 A A+++ D +P + L+G GV F M A N+ L LLDLV Sbjct: 181 DAVAVLDAKRADNTYPYEHLSGCGVGFKFMQAYAR---------SNNLPESKLLPLLDLV 231 Query: 230 ALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGP 289 A+ +D+VP+ NRIL + G+ ++ C G++A+++V +++ +D+ F +GP Sbjct: 232 AVSIASDIVPIMGENRILAYYGLRQLNKRPC-LGLQAIIDVCGLKKRRIDMNDIVFKIGP 290 Query: 290 RLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLER 349 R+NA+GR+ + V LLL + EA+ +D N R+E+++ + +A+ + +L Sbjct: 291 RINASGRMMNGGKAVELLLSQDAVEAQSRTANIDEYNDQRRELDKDVTEQAIDILGELS- 349 Query: 350 SRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMR 409 D L +Y PEWH+GV+GI+ASR+ ER+ RP I +GD + GS RS+ G + Sbjct: 350 --DVDKKILVIYRPEWHKGVIGIVASRMTERYSRPTIVMTKSGD-FISGSARSVGGFDVY 406 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 A+E L ++ FGGH A+GL+++E+ + F++ + E + P LL ++ D Sbjct: 407 KAIEHCKDL----LVNFGGHPFASGLTIKEENLETFRKMITDYAEEAVSPELLVPQIDVD 462 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ---RLVGE--RHLKVMVEPV 524 +S E+ ++ L+ GP+G +P+F +L R VG+ HLK+ V Sbjct: 463 AEISIEEVNYKLLDNLKRMGPFGPENSKPVFISR-QLYDAGGSRAVGKASEHLKIDVRVG 521 Query: 525 GG-GPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 G + GIAFN +L Y ++ NEF GN+SLQ+++ +I P Sbjct: 522 SGERHPVSGIAFNQAGHCNEIKNGS-FRLCYTIEENEFNGNKSLQLLVRDIKP 573 >UniRef50_B8DHM3 Single-stranded-DNA-specific exonuclease RecJ n=24 Tax=Listeria RepID=B8DHM3_LISMH Length = 783 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 177/581 (30%), Positives = 278/581 (47%), Gaps = 34/581 (5%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVE 58 I+ + ++ L +L R + + + ++ + ++ Sbjct: 8 WNIEEAAEDKASQLAEQLKISLPLAKLLWKRKITTQGQFDKFFHPEKYESYDPFLFAEMD 67 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 AV + A +I+V GD+DADG TS A+ + +R LG +N ++ +PNRF +GYG + Sbjct: 68 LAVARIKQAIELNEQILVYGDYDADGVTSIAVLMKTLRHLG-ANAEFYIPNRFTEGYGPN 126 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 D A +G LI+TVDNGI++ + HA+ +G+ VIVTDHH P + +P A A+I+P Sbjct: 127 IAAFDMAKNQGTDLIITVDNGIAALEVMTHAKEIGLDVIVTDHHEPREIMPEAVAVIHPK 186 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 +P LAGVGVA+ L AL ELLDLVA+GTVAD+V Sbjct: 187 HPKSAYPFDELAGVGVAYKLSHALLGEEPK---------------ELLDLVAVGTVADLV 231 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 L NR+L G+ ++R G+ L + A+ ++ +GF L PRLNA GRL Sbjct: 232 SLTDENRLLVQLGLRQLRES-ANLGLSVLAKKASLKLEEATEETIGFGLAPRLNAVGRLG 290 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 LLL ++ EA LA E+D N+ RK+I A+ E + TL L Sbjct: 291 PADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAMEAIEA----KVTLGNVL 346 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG-DGTLKGSGRSIQGLHMRDALERLDT 417 +Y W+ G++GI+AS++ + RP I G KGSGRS+ H+ AL++ Sbjct: 347 VVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSVDAFHLYQALDKHRD 406 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 L M FGGH MAAGL+L + + + E +L + + + ++ A++ Sbjct: 407 L----MTAFGGHPMAAGLTLPAENLIELEAKLQEEA-SFLSEEDFRPALKIEEKINIADV 461 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDGHF-RLLQQRLVG--ERHLKVMVEPVGGGPLLDGIA 534 ++ L P+G P+P+F L + +G + HLK M+ LD I Sbjct: 462 SVAFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTMLATEENDATLDSIG 521 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 F V + + V + +L INE+ + Q+ + +I Sbjct: 522 FGVGDLVEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIH 562 >UniRef50_D2QL07 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Sphingobacteriales RepID=D2QL07_9SPHI Length = 584 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 182/593 (30%), Positives = 299/593 (50%), Gaps = 38/593 (6%) Query: 2 KQQIQ------LRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPW 51 K+ I +R ET + P L L RGV++ +E + + Sbjct: 10 KRWITKPLPDSAEQRSAIETLTSSLGVSPFLAALLVQRGVQTYEEARTFFRPEINHLHNP 69 Query: 52 QQLSGVEKAVEILYNAF--REGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPN 109 ++ ++KA+ L A +I++ GD+D DG TS AL ++S + IDY +P+ Sbjct: 70 FEMKDMDKAIMRLQMAMLPERQEKILIYGDYDVDGTTSVALVYGFLKSYHPA-IDYYIPD 128 Query: 110 RFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLP 169 R+++GYG+S + + A G LI+ +D GI S V A++LG+ I+ DHH PGD +P Sbjct: 129 RYKEGYGISKQGIQWAAENGFSLIIALDCGIKSIDRVAEAKALGVDFIICDHHRPGDQIP 188 Query: 170 AAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLV 229 A A+++P DC +P K L+G GV F L+ A + + I + L LDLV Sbjct: 189 DAAAVLDPKRDDCAYPYKELSGCGVGFKLLQA---------FCLHKGIDLNELYPSLDLV 239 Query: 230 ALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGP 289 A+ +D+VPL NR+L G+ + A R G+KAL+++A ++L ++L F LGP Sbjct: 240 AVSIASDIVPLTGENRVLAHYGLKHLNASP-RTGLKALIKIAGFS-RELDITNLVFGLGP 297 Query: 290 RLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLER 349 R+NAAGR+ V LLL ++ EA A ++ N +R+E + M +AL + Sbjct: 298 RINAAGRIQHAKAAVQLLLAESEEEADEFAMAINKHNNSRREFDSSMTEQALEMIR--GN 355 Query: 350 SRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMR 409 ++ WH+GV+GI+ASR E FHRP I + D GS RS+ G + Sbjct: 356 ESLLQAKSTVLFDASWHKGVIGIVASRCIEHFHRPTIILTQSNDKAA-GSARSVPGFDVY 414 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 +A+E L + +FGGH AAG+++ D F+++F E+V + L + D Sbjct: 415 EAIEECADL----LEQFGGHTFAAGMTMSVDNIDAFRKKFEEVVASRIKEEHLTPLIDID 470 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH--FRLLQQRLVGERHLKVMVEPVG-- 525 PL +E++ ++ +++R GP+G +P F + + + ++ E+HLK+ V Sbjct: 471 LPLDFSEISDKLYRIVRQMGPFGPHNLQPTFMTEDVYLVSEPIIMKEKHLKINVRQGDTT 530 Query: 526 ---GGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 G I F + + + + Y++D N F GN SLQ+++ +I Sbjct: 531 ARRSGQTFTAIGFGMAHIADLLSPGKPFSICYQVDQNHFNGNVSLQLMLKDIK 583 >UniRef50_A4BBM4 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Reinekea blandensis MED297 RepID=A4BBM4_9GAMM Length = 573 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 274/562 (48%), Positives = 368/562 (65%), Gaps = 11/562 (1%) Query: 9 RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAF 68 R + PL+ RLY +R V QELE S++ ++ ++ L G+ +AV +L A Sbjct: 16 RTRPAHSLSKSLHPNPLVDRLYRARQVTDPQELEPSLRHLVDYRLLKGLTEAVSLLNRAR 75 Query: 69 REGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR 128 E R++VVGD+D DGATSTAL+VL ++S G ++DYL+PNRFE GYGLS E+VD A R Sbjct: 76 SERWRVLVVGDYDTDGATSTALAVLGLQSFGL-DVDYLLPNRFEYGYGLSAEIVDLALTR 134 Query: 129 GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKS 188 LIVTVDNGI+S GVE A + G+ V+VTDHHL G LP A AI+NPN DC FPSK+ Sbjct: 135 QPDLIVTVDNGIASIEGVERANAAGVKVLVTDHHLAGAELPQAAAIVNPNQPDCAFPSKA 194 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 G V +Y+++ALR LR QG +PNL + LDLVAL TVADVVPLD NNR L Sbjct: 195 ACGCTVLYYVLIALRAELRAQG-----QPDLPNLGQWLDLVALATVADVVPLDENNRRLV 249 Query: 249 WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 308 G++R+RAG+CRPGI+AL EVA R Q+ ASD GF +GPRLNAAGRLDDM++GV LLL Sbjct: 250 THGLNRVRAGQCRPGIRALFEVAGRQWQEAKASDFGFVIGPRLNAAGRLDDMTIGVQLLL 309 Query: 309 CDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQG 368 ++ EAR LA+EL ALN R++IEQ M + L R+ G+ + +WH+G Sbjct: 310 AESDDEARSLASELHALNTERRQIEQSMVADVSKSLPDLSRTDKRC--GIVVTGNDWHEG 367 Query: 369 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGG 428 V+GI+ASR+K+R H+PV+AFA +G KGS RS+ G+HMRDAL+ + G++LKFGG Sbjct: 368 VIGIVASRVKDRIHKPVVAFAAGDNGQWKGSARSVPGVHMRDALDWVAKKSEGVVLKFGG 427 Query: 429 HAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 HAMAAGL++ D+ F F + V + L + DG LS +E+T++ A L A Sbjct: 428 HAMAAGLTIAADRSDEFADLFDQAVQALAESEALTPHLWCDGALSDSELTLDNALALEQA 487 Query: 489 GPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVR 548 GPWGQ FPEPLF G F++ +R++ +RHLK+ ++ G IAFNV+ ++ + Sbjct: 488 GPWGQAFPEPLFYGEFQISDRRVLADRHLKMTLQQGAG--EWPAIAFNVEPSIL-NASAT 544 Query: 549 EVQLAYKLDINEFRGNRSLQII 570 V Y+L +N FRG S+Q+I Sbjct: 545 RVHGLYQLSVNRFRGQVSVQLI 566 >UniRef50_Q3A9Z7 Single-stranded DNA-specific exonuclease RecJ n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A9Z7_CARHZ Length = 854 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 187/582 (32%), Positives = 301/582 (51%), Gaps = 25/582 (4%) Query: 2 KQQIQLRRREV--DETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLP----WQQLS 55 K+ + ++ + + PL ++ +RG+ + + R G + L Sbjct: 3 KKNWLIFETSHLGEKYLEDFFRIEPLTAKMLVNRGIFHPRGVRRFFWGNIDDTYSPYLLK 62 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 +EKAV+++ + R + ++ GD+DADG TSTAL +R G N+D+ +PNR ++GY Sbjct: 63 DMEKAVKLILSG-RNTEKFLIYGDYDADGLTSTALLYDFLRKRGF-NVDWYIPNRLDEGY 120 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL + +A G I++VD GI++ V+ R +G V++TDHH P + +P AEA+I Sbjct: 121 GLHLPPLVKALEEGISFIISVDCGITAVDEVKTVREMGAKVVITDHHEPQEEIPVAEAVI 180 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP +DC +P K LAGVGVA L+LAL L ++ L + LDL +GT+A Sbjct: 181 NPKQKDCPYPFKGLAGVGVALKLVLALGMALGER--------EEDILDQYLDLFTVGTIA 232 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL NRI +G+ R+ A RPG+KAL EVA + +++ D+GF L PRLNAAG Sbjct: 233 DIVPLVDENRIFVIEGLKRLAAT-GRPGLKALKEVAQLNREEITTRDVGFILSPRLNAAG 291 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RL D ++ LL+ +N A LA L NQ R+ IE + A+ E+ Sbjct: 292 RLKDPALAFELLIEENYERALALAYRLSEENQNRQGIEAEIFKAAVETIER--EVDLDRE 349 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 L + WH GV+GI+AS++ E+++RPVI + G+ KGSGRS+ G ++ +AL+ + Sbjct: 350 KILIIGGDGWHPGVIGIVASKLMEKYYRPVILISFDGE-EGKGSGRSVFGFNLFEALKAV 408 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + FGGH A G+ + + +F F++ + L LL ++ + + Sbjct: 409 KD----YLTHFGGHERAVGVGVLKSRFLEFKEALLAYAEKHLPDELLLPKIEVEEVVGEN 464 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 ++ ++++ + P+G+ PEPLF ++ + VG+ + + IA Sbjct: 465 DLNLKISDEIALFAPFGEQNPEPLFLIKGGQIRGAQAVGKNGNHLKFNVKLNREIFSSIA 524 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 F+ L EV LA+ N F G LQ+ + I P Sbjct: 525 FSKGDYLEFVYQQNEVDLAFIPKPNRFNGKTELQLNVKEIAP 566 >UniRef50_Q3MAJ6 Exonuclease RecJ n=6 Tax=Cyanobacteria RepID=Q3MAJ6_ANAVT Length = 730 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 182/625 (29%), Positives = 308/625 (49%), Gaps = 69/625 (11%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQ-QLSG 56 + QI L++ ++ + A L P++ +L +RG+ + ++ + ++ + + Sbjct: 20 RWQIHLQKTDLAQKLADAANLSPIVCQLLINRGIETPEQAQAFLEPESLNLPSPLTEFPD 79 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + +VE+L A ++I + GD+DADG TSTAL + ++RSLG + +DY +P+R +GYG Sbjct: 80 LAMSVELLQEAIASQSKIAICGDYDADGMTSTALLLRSLRSLG-AQVDYAIPSRMHEGYG 138 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 ++ +V++ H+ G +LI+TVDNGIS+ + A+ LG+ VI+TDHH LP A+AI+N Sbjct: 139 INKRIVEEFHSEGVKLILTVDNGISAFEPIARAKELGLNVIITDHHDIPQKLPPADAILN 198 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P L + P + +AGVGVA+ L ++L L + +L L LGT+AD Sbjct: 199 PKLIAESSPYRGVAGVGVAYILAVSLAQKLDK---------TKGLIQPMLALFTLGTIAD 249 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR----------------------- 273 + PL NR +G+ + + PG++AL++VA Sbjct: 250 LAPLSGVNRRWVKRGLKLLPKSQL-PGVQALIQVAGVQAINSKFKIPFGNAKGEQNSKLI 308 Query: 274 --------------------DAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIG 313 + Q L D+GF LGPR+NA GR+ D + LL D+ G Sbjct: 309 NNDSNKDLTYGVPNPQSPVPNPQSLKPEDIGFRLGPRINAVGRIGDPLTVIELLTTDDEG 368 Query: 314 EARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGIL 373 A A + + N +R+++ + ++ +A+ E L + L + P WH GV+GI+ Sbjct: 369 LALERAMQCEQANTSRQQMCEEIEQQAIAHVEDLYATSLQQDRVLVVIQPNWHHGVIGIV 428 Query: 374 ASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAA 433 ASR+ ER+ PV + ++GS RSI ++ +ALE L + K+GGH A Sbjct: 429 ASRLVERYGVPVFIGTYEDEELIRGSARSIPEFNVFEALEYCHDL----LGKYGGHKAAG 484 Query: 434 GLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQ 493 G S + + R E + L P L+ + D + ++ E+ Q L P G Sbjct: 485 GFSFPATNLQKLRSRLSEFANQCLQPQHLKPLLQIDVEANFNQIHQELYQQLNSLHPCGI 544 Query: 494 MFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGP--LLDGIAFNVDTALWPDNGVREV 550 P+P+F + ++++Q++VG+ H+KV + G IA+ + Sbjct: 545 DNPDPVFWTPNVQVVEQQIVGKGHIKVTLSQTIEGQPYQFKAIAWRWRDYYPL---PPRL 601 Query: 551 QLAYKLDINEFRGNRSLQIIIDNIW 575 +AYKL N F GN SL++ + + Sbjct: 602 DIAYKLRENNFNGNTSLELELLGVR 626 >UniRef50_C0X5S7 Single-stranded-DNA-specific exonuclease RecJ n=38 Tax=Enterococcus RepID=C0X5S7_ENTFA Length = 770 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 186/584 (31%), Positives = 281/584 (48%), Gaps = 41/584 (7%) Query: 2 KQQIQLRRR-----EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQ 52 Q QL+ + E E E+ PL+ +L R +R+ + L + + + Sbjct: 5 NYQWQLQTKTELPVEFIEQLKKE-EINPLIGQLLWHRNIRTEEALRKFLHPTIEDIYDPF 63 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 + +EKAV + A G +I+V GD+DADG TST + A+ +G + Y +PNRF Sbjct: 64 LMHDMEKAVARIQQAVEAGEQILVYGDYDADGITSTTVMKEAIELVG-GMVQYFLPNRFV 122 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 GYG + +V + +G QLIVTVDNG++ H + +A + G+ VIVTDHH + LP A Sbjct: 123 HGYGPNKDVFAEQIEQGVQLIVTVDNGVAGHEAINYAMAQGVDVIVTDHHELPEQLPEAY 182 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 AI++P ++P LAGVGVAF + AL L ELLDLVA+G Sbjct: 183 AIVHPRHPQGDYPFGDLAGVGVAFKVATALLGELP---------------IELLDLVAIG 227 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 292 T+AD+V L NR G+ I+ G R G+ LL+ A + ++ +GF +GPRLN Sbjct: 228 TIADLVSLTDENRTFVKMGLQMIQTG-DRIGLDVLLQEAGVKKEAVSEESIGFTIGPRLN 286 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 A GRL + + GV L+ + +A +A +D N RK+I + EAL L D Sbjct: 287 ALGRLGEAAPGVELMTTFDEEQALEIAKYIDQQNNERKDIVTTIAKEALDLI-------D 339 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG-TLKGSGRSIQGLHMRDA 411 + WH+GV+GI+A RI + +P I A G T KGSGRSI L++ +A Sbjct: 340 PNAPVHILAKQGWHEGVLGIVAGRIMQETGKPTIILAIDESGTTAKGSGRSISALNLYEA 399 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L + + FGGH MAAG++L + Q+ + + E++ Sbjct: 400 LNEVREQF----THFGGHHMAAGMTLPVENIPFVQEHLAHFIEKNQIDMANGQELLISES 455 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLL 530 L+ ++ T LR P+G P F Q R +G + + + G L Sbjct: 456 LAVSQATTTFIDQLRILAPFGTDNTVPTFVFKEITPTQIRQIGADNAHLKFQMNQEGAQL 515 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 D IAF + +A +L INE+ G + Q+++ + Sbjct: 516 DAIAFQMGPQADELAQG-TADVAGQLSINEWNGRKKPQLMVTDF 558 >UniRef50_C5CED3 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CED3_KOSOT Length = 1047 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 178/588 (30%), Positives = 295/588 (50%), Gaps = 34/588 (5%) Query: 1 MKQQIQLRRREVDET--ADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 M+++ L + + + L +L +RG+ E + + + + Sbjct: 1 MRKEWVLLNADGTQVNHLVEYLGIEAFLAKLLVNRGITDVTEALKYLNPDRTLLHDPFLM 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++KAV+ + A G I+V GD+D DG TSTAL LAM+ +G N+ Y +P R E+G Sbjct: 61 KDMKKAVKTIIEAGERGDSIVVFGDYDVDGVTSTALLYLAMKKMGF-NVSYYIPLRLEEG 119 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YGLS +++ +++G +L++TVD G++S +E A+ LG+ V+VTDHH D LP AEAI Sbjct: 120 YGLSRAAIEELYSQGHRLLITVDCGVTSFDEIEFAKKLGLKVVVTDHHEVKDKLPLAEAI 179 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NP D N+P K LAGVGVAF L+ AL LR N + LD+VALGT+ Sbjct: 180 VNPKRPDDNYPFKGLAGVGVAFKLLSALNETLRMPL----------NPEDYLDIVALGTI 229 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+VPL NR + +G +I+ G+K LL + L A D+ F + P+LNAA Sbjct: 230 ADIVPLRDENRFIVREGTKKIQKEPL-LGLKILLSYLRINPDNLTAQDIAFKIAPKLNAA 288 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+D V + LL+ ++ +A A+ L NQ R+ IE + +A E +D Sbjct: 289 GRMDSAVVALELLISEDKAQAMRTASRLLQHNQNRQMIEAKIFEQATKEIESNVSMKDNF 348 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 + + WH GV+GI+ASR+ +++RPV + + DG KGS RS G+ + L + Sbjct: 349 --VVVLSGENWHLGVLGIVASRLVAQYNRPVFLISTS-DGEGKGSARSPSGISIISLLNK 405 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + + ++GGH MAAG S++++K F++R E + L ++ D L+ Sbjct: 406 TADI----LDEYGGHEMAAGFSIKKEKIPEFRKRLNEAYMDIYGEELPTYKIEVDDVLTL 461 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFD---GHFRLLQQRLVGERHLKVMVEPVGGGPLLD 531 ++ E + + P+G PEP F + + G H+K+++ G Sbjct: 462 ESISPETLKKIDMLRPFGHSNPEPKFLFKGLNIERTKSFGSGGGHIKMILR--SGERKTL 519 Query: 532 GIAFNVDTALWPDNGVRE----VQLAYKLDINEFRGNRSLQIIIDNIW 575 + F ++ V+ + + + G + +++ + + Sbjct: 520 AVGFGMNGLFDEFKYVKPNLLKLDAVASIKQDNGYGIQGMKLSLVDAR 567 >UniRef50_Q26GN0 Single-stranded DNA-specific exonuclease n=7 Tax=Flavobacteria RepID=Q26GN0_9BACT Length = 565 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 169/586 (28%), Positives = 278/586 (47%), Gaps = 35/586 (5%) Query: 3 QQIQLRRREVD---ETADLPAELPPLLRRLYASRGVRS----AQELERSVKGMLPWQQLS 55 + L+ + E + L L RGV + + + + Sbjct: 1 MRWTLKPQPDIATQEKLAQELGIDSFLAGLLVQRGVDAFAKAKSFFRPDLNELHDPFLMK 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++ AV+ + A I+V GD+D DG TS AL + S + +P+R+ +GY Sbjct: 61 DMDVAVQRIQKAIGNNENILVYGDYDVDGTTSVALMSTFLLSF-YDRVATYIPDRYGEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G+S + +D A LI+ +D G+ + V +A GI I+ DHH PG LP A A++ Sbjct: 120 GVSYQGIDYAADNDFSLIIALDCGVKAIDKVAYAAEKGIDFIICDHHRPGKKLPNAIAVL 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P DC +P L G GV F L A + + + L LDLVA A Sbjct: 180 DPKRDDCTYPFDELCGCGVGFKLCQA---------FVEANDWEFEMLIPYLDLVATAIGA 230 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VP+ NRIL + G++ I R G KA++ L +D+ F + PR+NAAG Sbjct: 231 DIVPIVGENRILAYHGLNVINTSP-RAGFKAIIHQ--LKKDTLTITDVVFIIAPRINAAG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ V L++ D+ EA+ +A E++ N R+E ++ + EA + + Sbjct: 288 RMKHALHAVELMVTDDFKEAQRIAAEIEEYNADRREADRSITEEAKQQI---INNNEEER 344 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 ++ WH+GV+GI+ASR+ E ++RP + F +GD L S RS+ G + +ALE+ Sbjct: 345 FTTVVFQENWHKGVIGIVASRLIETYYRPTLVFTKSGD-YLAASARSVSGFDVYNALEQC 403 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + +FGGH AAGL+L+ + + LF+ RF E+V ++ L E+ D L Sbjct: 404 SD----YIEQFGGHKYAAGLTLKPENYSLFKDRFEEVVCATIEKQHLTPEIKIDAMLPLE 459 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ---RLVGE--RHLKVMVEPVGGGP-L 529 ++ + ++L+ P+G P+F +++ + VG+ HLKV V Sbjct: 460 NISPKFYRILQQMAPYGPGNMRPVFMTE-KVMDTGYGKCVGKSEDHLKVKVVKNKNDRNG 518 Query: 530 LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 +D I FN+ + +AY + NE+ GN SLQ+++ +I Sbjct: 519 MDAIGFNLGGKSDLVKNKVKFDIAYTISENEWNGNISLQLLLKDIK 564 >UniRef50_A7H9Y9 Single-stranded-DNA-specific exonuclease RecJ n=7 Tax=Deltaproteobacteria RepID=A7H9Y9_ANADF Length = 599 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 218/581 (37%), Positives = 302/581 (51%), Gaps = 22/581 (3%) Query: 2 KQQIQLR-RREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSG 56 ++ I+ L P+ R+ A RG+ + E + + + G Sbjct: 26 RRWIETAVDAAAAARLAEALRLHPVAARVLAGRGLADPADAEAFLASRLSELPDPFTMKG 85 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++ AV L A G RI GD+D DG TSTAL +R+ G +++ P+R +GYG Sbjct: 86 MDAAVSRLVQAVEAGERIACYGDYDVDGVTSTALLCGFLRAAG-ADVVTYTPHRLVEGYG 144 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ E V + A+GA+L+VT+D GI+S V A +LG+ +V DHH LPAA AI+N Sbjct: 145 LNTEAVRKLAAQGARLLVTLDCGITSVEEVRAAAALGLDTVVVDHHTVPVELPAARAILN 204 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P+ C +PSK LA VGV F L +ALR LR++G A PNL + LDLVALGT+AD Sbjct: 205 PHQPGCAYPSKGLAAVGVTFALAMALRRTLRERGR-FGGGRAEPNLKDALDLVALGTIAD 263 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR-DAQKLAASDLGFALGPRLNAAG 295 VVPL NRIL G+ I + RPG+ AL VA + ++ A +GF L PR+NAAG Sbjct: 264 VVPLVGANRILVRWGLEAIAKSR-RPGLCALKRVAGIAEGGEVTAGQVGFRLAPRINAAG 322 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RLDD GV LLL D+ AR LA ELD N R+EIE+ + EA + Sbjct: 323 RLDDAGRGVRLLLSDDEATARALAEELDRENAARQEIERRILDEATEDARARVGAG---V 379 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 GL + WH GVVGI+ASRI ERFHRP + A +G+ KGSGRSI+ H+ DAL Sbjct: 380 RGLVLARDGWHAGVVGIVASRIVERFHRPAVLVAL-EEGSGKGSGRSIEAFHLYDALAAC 438 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 G + +FGGH AAG+++E F+ F L L DG L Sbjct: 439 S----GHLARFGGHRHAAGVTVERGSLAAFRAAFEAHAAAQLAEEDLVPRCRIDGWLEER 494 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 ++T +A+ L GP+G PEP+F + R VG + + + G +D I F Sbjct: 495 DVTERIAEDLAKLGPFGAGHPEPVFALRGAATRARTVGAGNAHLKLAL---GRGIDAIGF 551 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + L V+ A+ L + + G R LQ+ + ++ P Sbjct: 552 GMGDRLA--ACAGPVEAAFTLGFDAWDGARRLQLKLRDVRP 590 >UniRef50_A5MZ56 RecJ n=30 Tax=Clostridium RepID=A5MZ56_CLOK5 Length = 595 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 166/610 (27%), Positives = 289/610 (47%), Gaps = 56/610 (9%) Query: 1 MKQQIQLRRRE-VDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 MK++ L+R + A + ++ + A+RG+ +E+ + + + Sbjct: 1 MKRRWMLKRCNKDVKYISKKAGISEIMATILANRGIVEEKEIRDFLNPSVDNLQDPLSMK 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 +EK +I+Y A + I + GD+D DG ST + + G + + Y +P+R E+GY Sbjct: 61 DMEKGTDIIYKAIMDNKNIAIYGDYDVDGVMSTYILYCGLLKCG-AKVKYHIPDRIEEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT-------- 167 G++ + +++ G ++I+T DNGIS+ A V+ A+ LGI V++TDHH Sbjct: 120 GINIKSIEKLKEEGCEVIITCDNGISALAQVKRAKELGIAVVITDHHHIFFEERENGEKT 179 Query: 168 --LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAEL 225 +P A+A+I+P DC++P K L G GVAF + L N + Sbjct: 180 YLIPEADAVIDPKQEDCSYPFKHLCGAGVAFKFIQVLYKKF---------NFKKEQCYKF 230 Query: 226 LDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGF 285 + A+GT+ D+V L NRI+ +G+ I + G+KAL+E + + + + +GF Sbjct: 231 IQYAAIGTICDIVDLIDENRIIVKKGLDMINNTE-NLGLKALIEETSLKGKNITSYHIGF 289 Query: 286 ALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCE 345 +GP +NA GRL + + LLLC + +A LA +L LN R+++ + + Sbjct: 290 IIGPCINATGRLKSAVLALELLLCKDAEKAGKLAKKLHELNIQRQDMTVKSLN---NIID 346 Query: 346 KLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQG 405 K+E S L +Y E H+ + GI+A R+K+R++ P I +G KGSGRSI+G Sbjct: 347 KVENSNLKRDKVLVVYEKETHESIAGIVAGRLKDRYNVPSIVIT-SGRIMSKGSGRSIEG 405 Query: 406 LHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGE 465 +M + L + L M KFGGH +AAGLS+ E+ ++ + L L + Sbjct: 406 YNMFEELVKCKEL----MEKFGGHPLAAGLSITEENINRLRENLNKNCN--LTEEDLIPK 459 Query: 466 VVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERH--LKVMVE 522 + D L ++ V + ++ P+G+ PLF + + + + +G+ LK+ Sbjct: 460 IRIDKKLPLENISFHVLEDIKKLEPFGKGNSTPLFGEKNIDVFKIYFMGKDKNVLKLFCR 519 Query: 523 PVGGGPLLDGIAFNVDTALWPDN-----------------GVREVQLAYKLDINEFRGNR 565 +D IAF+ ++ + INEF G + Sbjct: 520 LKNSLKKIDAIAFDGGEKFKKLILEVYGSSGANKIFNNNFTSLKMDFIFLPCINEFNGVK 579 Query: 566 SLQIIIDNIW 575 +LQ++I + Sbjct: 580 NLQLVIKDFR 589 >UniRef50_B0K968 Single-stranded-DNA-specific exonuclease RecJ n=11 Tax=Thermoanaerobacteraceae RepID=B0K968_THEP3 Length = 811 Score = 586 bits (1511), Expect = e-166, Method: Composition-based stats. Identities = 171/578 (29%), Positives = 295/578 (51%), Gaps = 30/578 (5%) Query: 3 QQIQLRRRE--VDETADLPAELPPLLRRLYASR-GVRSAQ-ELERSVKGMLPWQQLSGVE 58 + I ++ + E LP ++ + ++R ++ + L +K + L G++ Sbjct: 6 RWILKENKDSRLSEEVQKTYGLPKIIADMLSARLNLQEVKSFLNPDLKDLYSPYLLRGIK 65 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 +A +++ I + GD+D DG T+T++ L ++ LG + +DY +P R +GYG++ Sbjct: 66 EAKDLIQQHIASKDLITIYGDYDVDGITATSILYLTLKKLG-AKVDYYIPERLVEGYGIN 124 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 E +D+ RG +LI++VD GI+S VE A+ LGI VI+TDHH +P A+ +INP+ Sbjct: 125 EEAIDKIAQRGTKLIISVDCGITSVKEVEKAKFLGIDVIITDHHSIPKEIPQADVVINPH 184 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 L D +P LAGVGVAF L AL ELLD+V++GT+AD+V Sbjct: 185 LPDSEYPFCDLAGVGVAFKLSQALIGE---------------EAYELLDIVSIGTIADIV 229 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NRI+ +G+ R+ + G+KA+++ + + ++ +GF L PRLNAAGRL Sbjct: 230 PLLGENRIIVKEGLKRLNETQ-NIGLKAIIKASGLENIEIDEYHVGFILAPRLNAAGRLR 288 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 V LL+ + E +A L+ N R++IE + EA+ ++ + Sbjct: 289 SAEAAVRLLISQDEKEVEEIAEYLNQENLNRQQIENQILQEAIKKIKETV--DLNKEKVI 346 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 ++ WH GV+GI+ASRI ERFHRP I + G+G KGSGRSI+G ++ ALE Sbjct: 347 VLWDKNWHPGVIGIVASRITERFHRPSILISL-GEGEGKGSGRSIEGFNLYKALEYCKD- 404 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 ++K+GGH MAAG+++E++ ++F+ + E L L + D + ++ Sbjct: 405 ---YLIKYGGHEMAAGINIEKNNLEIFKTKINEYADTVLSDLDLIPSLRIDAKVKNEKID 461 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 +E+A+ ++ P+G P P F + + + K + + + + F+ Sbjct: 462 IEIAKQVQRFKPFGSNNPRPNFLFEGLTVTKVFDLNGGKYK-KIIVQKDKFVYELMLFDA 520 Query: 538 DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + ++IN + G + I + ++ Sbjct: 521 SEKGNDVKIGDVIDVVGSIEINSWNGIELVVINVKDLR 558 >UniRef50_Q1N0E3 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Gammaproteobacteria RepID=Q1N0E3_9GAMM Length = 581 Score = 585 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 268/571 (46%), Positives = 366/571 (64%), Gaps = 21/571 (3%) Query: 24 PLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDAD 83 P++ R+ SRG+++ L S+ + +Q L G+++AV +L A R RI+++GDFDAD Sbjct: 15 PIIERVLDSRGLKTGD-LSFSLNQLAGYQALKGIDQAVAMLEFAIRSQQRIVIIGDFDAD 73 Query: 84 GATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR-GAQLIVTVDNGISS 142 GATSTAL+V A++ LG + YLVPNRFE GYGLS + A+ + L+VTVDNGISS Sbjct: 74 GATSTALAVDALQQLGAHWVHYLVPNRFEFGYGLSSAIAQLAYEQYQPDLLVTVDNGISS 133 Query: 143 HAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLAL 202 GVE A LG+ V+VTDHHL D+LP A+AI+NPN DC FPSK+ G V FY+M AL Sbjct: 134 FEGVETAHELGMKVLVTDHHLAADSLPNADAIVNPNQPDCLFPSKAACGCAVVFYVMCAL 193 Query: 203 RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRP 262 R + G +N+ N+A+ LDLVAL TVADVVPLD NN+IL QG+ RIRAG+ RP Sbjct: 194 RAHRMNLGDETAKNL---NMAQYLDLVALATVADVVPLDRNNQILVEQGLRRIRAGQARP 250 Query: 263 GIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 322 G++ALL+VA R A L + D GFALGPRLNAAGR+DDMS+G+ LL A +A L Sbjct: 251 GVQALLQVAKRQAPLLTSKDFGFALGPRLNAAGRMDDMSIGIECLLSKEFTRAVHIAETL 310 Query: 323 DALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFH 382 D LNQ RK +E MQ EAL + E S + +YHP+WHQGVVG+LASRIKE+ Sbjct: 311 DELNQDRKSVEGQMQKEALKILETTSLSNEQEQATYCLYHPQWHQGVVGLLASRIKEKLF 370 Query: 383 RPVIAFAP-----------AGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 RPVIAFAP +G+ +KGSGRSI G HMRDAL+ + P ++ KFGGHAM Sbjct: 371 RPVIAFAPASDDVTNEALASGEFEIKGSGRSIPGFHMRDALDLVAKRLPHVLQKFGGHAM 430 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 AAGLS+++ K F+ F ++ + + +L E+++DG + + + +A+ L+ PW Sbjct: 431 AAGLSIQQKHLKEFETCFEQVARDIMTADMLVNEIITDGEPNYEDYNVHIARQLKFVAPW 490 Query: 492 GQMFPEPLFDGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAF---NVDTALWPDNG 546 GQ FPEP+FDG F ++ RL+G + HLK+ + LD I F + + Sbjct: 491 GQNFPEPIFDGEFDVINYRLIGSEKNHLKLTLASKNHHRYLDAILFSIERHGLSAQDVSN 550 Query: 547 VREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 + V + + LD+NEFRG ++Q++I ++ I Sbjct: 551 LSRVHIVFDLDVNEFRGQENVQLMIRHLRSI 581 >UniRef50_A6BZD1 Single-strand DNA-specific exonuclease n=2 Tax=Planctomyces RepID=A6BZD1_9PLAN Length = 587 Score = 585 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 186/590 (31%), Positives = 287/590 (48%), Gaps = 30/590 (5%) Query: 1 MKQQIQLRRREVDET--ADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 M Q + + + + PLL ++ +RG++ A + +L + Sbjct: 1 MTQNWRFAPHDESQVRRLSSEMRISPLLAQVLIARGLQDAAAARSFIDARMTELLEPGSM 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 GVE A + + A ++ RI + GD+D DG T+T++ + + DY +PNR +DG Sbjct: 61 PGVETASDRIVAALKDKRRITIYGDYDVDGMTATSILLQCITLAN-GKCDYFIPNRLDDG 119 Query: 115 YGLSPEVVDQAHARGA-QLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 YGL+ + + Q H +L++TVD GI+S AR LG+ +I+TDHH D LPAA+ Sbjct: 120 YGLNCDAIRQLHEEDPQRLLITVDCGITSVQEAALARELGLELIITDHHQMADELPAADC 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL----DLV 229 +++P L D ++ L G GVA L A+ L D A P + E L L Sbjct: 180 LVHPRLPDSDYEFPHLCGAGVALKLAWAVCQKLGD------GQKASPQMREYLKCAVGLA 233 Query: 230 ALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRD-AQKLAASDLGFALG 288 A+GT+ADVVPL NRIL G+S + + G++ L++VA Q L D+GFA+ Sbjct: 234 AIGTIADVVPLVGENRILVRYGLSALAE-RAPLGLQELMKVAEIKAGQMLDTEDIGFAIA 292 Query: 289 PRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLE 348 PRLNAAGRL + V LL N A LA LD LN+ R+ +E+ + +A + E+ Sbjct: 293 PRLNAAGRLGQARLAVELLTTSNQDRASQLAAYLDELNKNRRTVERRIFKQAKEMVEENA 352 Query: 349 RSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG-DGTLKGSGRSIQGLH 407 + L + H +WH GV+GI+A+R+ E F +P + A T +GS RS G Sbjct: 353 EWEE--HHTLVLAHADWHPGVIGIVANRVSEHFEKPTVLIALDATTRTGQGSARSFAGFD 410 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 + ++++GGH AAGL +EEDK + F+Q F E + PS + V Sbjct: 411 LHAGFSSCSA----HLVRYGGHQAAAGLKIEEDKIENFRQAFAEYAADAPKPSEDELLVR 466 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQ-QRLVGERHLKVMVEPVG 525 D + E+T + + L GP+GQ P P F +L + R +GE + + Sbjct: 467 IDAEVCLNEITKQAVRELDCLGPFGQENPRPQFVATRVQLAEPPRTMGEGGRHLSLVFQQ 526 Query: 526 GGPLLDGIAFNVDTAL-WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + IAF D +++ IN FRG S+Q+ + + Sbjct: 527 HNTKIRAIAFGKGEWATQMDEDGGPFSISFAPGINRFRGFESVQLQLKDW 576 >UniRef50_A4SDH3 Single-stranded-DNA-specific exonuclease RecJ n=12 Tax=Chlorobiaceae RepID=A4SDH3_PROVI Length = 574 Score = 585 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 186/585 (31%), Positives = 290/585 (49%), Gaps = 32/585 (5%) Query: 1 MK-QQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELERS----VKGMLPWQQ 53 MK + L + + L R++ RGV+S E ++ + Sbjct: 1 MKRYRWNLPPVDDAALTSFACSIKASLPLARIFFMRGVKSYDAAEAFFTASLETLPSPSL 60 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 + + KAV + A R G +I++ GD+D DG T TA+ L +R +++ Y + NRFE+ Sbjct: 61 FASMPKAVGRVQEAIRSGEKIMIYGDYDVDGITGTAMLNLFLRDRD-ADVSYYINNRFEE 119 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYGLS E + A R LI+TVD GIS++ +E A LG+ VIV DHH P + LP A A Sbjct: 120 GYGLSMEGIRAAAERQVGLIITVDCGISANLAIERAGELGMDVIVCDHHEP-EELPDAYA 178 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 I+NP + C++P + L G GVAF + A+ L+ ++ + + LDLVA+ T Sbjct: 179 ILNPKVPGCSYPFRELCGCGVAFRFVQAIAEELQ---------LSAESWQQYLDLVAIAT 229 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 AD+V L NR + +G ++ R GI+A+L + + L + + F + PR+NA Sbjct: 230 AADMVVLSEENRTMVREGFRMMQQRP-RVGIEAMLSFMKVNPRDLGMTGVTFGIAPRINA 288 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGR+ V LL ++ EA EL+ LN R+ + M A + E + Sbjct: 289 AGRMGSARKAVDWLLAESKDEAHKHTGELEELNILRRRTDLEMLKRAEEMVEGHFA---S 345 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 + +Y WH GVVGI+AS++ ER+H P + + + +KGS RS+ GL++ L+ Sbjct: 346 YCSSIVLYDESWHLGVVGIVASKMLERYHLPTVILGASKE-LVKGSVRSVPGLNIYSVLQ 404 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 L + +FGGH AAG+S+ + F++RF E+ LD Q E+ D L Sbjct: 405 ECSDL----LEQFGGHHQAAGVSMRPENLPAFRKRFDEISARVLDMDARQKELTVDTELG 460 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHF--RLLQQRLVGERHLKVMVEPVGGGPLLD 531 E+T + L+ P+G PEPLF RL+ ERH+K MV G LD Sbjct: 461 LGEITGNFMKALQRFSPYGVGNPEPLFLTEGLQCTGSVRLLKERHVKFMVRDAS-GKRLD 519 Query: 532 GIAFNVDTALWPD--NGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 IAF+ + + + Y L+++E+ G Q + ++ Sbjct: 520 VIAFDRKDIYDALMESSGQSFSMVYSLELHEWNGRVEPQAKVKDL 564 >UniRef50_Q2YBC4 Exonuclease RecJ n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2YBC4_NITMU Length = 613 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 255/593 (43%), Positives = 354/593 (59%), Gaps = 39/593 (6%) Query: 18 LPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 + P+L R+Y++RG+ +LE ++P+ +L + L A R+++V Sbjct: 18 IRHGFHPVLARVYSARGIEEPGQLEIDWSRLIPFARLKNATAMAQFLATAIALRKRLLIV 77 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHA--RGAQLIVT 135 D+D+DGAT+ A+ + A+R G + +DYLVPNRFE GYGL+PE+V A A +++T Sbjct: 78 ADYDSDGATACAVGIRALRKFG-AQVDYLVPNRFEYGYGLTPEIVRVAAAGVHRPDILIT 136 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVA 195 VDNGI+S GV A LG+ V+VTDHHLPGDTLP A I+NPN C+FPSK L+GVGV Sbjct: 137 VDNGIASVEGVAEANRLGMQVLVTDHHLPGDTLPEAAVIVNPNQPGCDFPSKHLSGVGVM 196 Query: 196 FYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 FY+MLALR LR +G F PNL LLDLVALGTVADVV LD NNR+L QG+ RI Sbjct: 197 FYVMLALRAELRAKGMFASPQQ-EPNLGSLLDLVALGTVADVVKLDDNNRLLVQQGLKRI 255 Query: 256 RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 R G GI AL+ +A R+ + + +LGF +GPRLNAAGRLDDMS+G+ L+ D+ A Sbjct: 256 RKGSGCAGINALINIACRNFSQTSTYELGFMIGPRLNAAGRLDDMSLGIECLITDDPPRA 315 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKL---------------------------- 347 LA +LD N+ R+EIE M+ AL + E + Sbjct: 316 AQLALQLDTFNRKRQEIESHMRDSALNMLENIFSGSSGLQDSPTLRPSDMPQRSGVFRSH 375 Query: 348 -ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGL 406 T L ++ P WHQGV+GILASRIK++FHRPVI FAP G LKGSGRSI G Sbjct: 376 DSPQEGTSAYALTLFDPGWHQGVIGILASRIKDKFHRPVITFAPGGQDELKGSGRSIPGF 435 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 H+RDAL+ + YPG++LKFGGH+ AAGL++ F+ F+ F + E L P+ L+ + Sbjct: 436 HLRDALDLVSKRYPGLLLKFGGHSAAAGLTIRTCDFEKFRAAFEQTARELLGPADLKRVI 495 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPV-- 524 +DG L +E+T+E+A+ L WGQ FP+P F F + QR+VG++HLK+ + Sbjct: 496 ETDGDLDESEITLELAEQLVR-QVWGQGFPQPAFRSRFHVEDQRVVGQKHLKLKLRKARP 554 Query: 525 ---GGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 P + ++ L + Y+L +N+F+ + SLQ I+++ Sbjct: 555 AAGNNPPEKPVLLYDAILFLQDGPLPGVIDAVYRLQVNDFKSDVSLQFILEHW 607 >UniRef50_B7K3K2 Single-stranded-DNA-specific exonuclease RecJ n=8 Tax=Cyanobacteria RepID=B7K3K2_CYAP8 Length = 655 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 180/583 (30%), Positives = 299/583 (51%), Gaps = 28/583 (4%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQ-QLSG 56 + +I E + L PL+ ++ +RG+ + + + + + + Sbjct: 8 RWEIATPNPEQVKQLIEATGLSPLIAKVIINRGIDTVKSTQVYLDPEVENLPSPLKEFPD 67 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + ++ +L A G +I + GD+DADG TSTAL + A LG ++I Y +P+R +DGYG Sbjct: 68 LATSITLLQEAITTGEKIAICGDYDADGMTSTALLLRAFSQLG-ADIYYEIPSRMKDGYG 126 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 ++ +V+ +G +I+TVDNGIS++ ++ A LG+ VI+TDHH + LP A+AI+N Sbjct: 127 INERIVEAFADQGVGVILTVDNGISAYQPIQRAIELGLTVIITDHHDLPEKLPPADAILN 186 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P L N P + LAGVGVA+ L + L F + LL+L LGT+AD Sbjct: 187 PKLLPENSPYRGLAGVGVAYILAVTTAQSLGITQGF---------IDPLLELFTLGTIAD 237 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR--DAQKLAASDLGFALGPRLNAA 294 + PL NR +G+ R+ + G++AL++VA + ++L D+GF LGPR+NA Sbjct: 238 LAPLIGVNRRWLKRGLRRLPKSQL-AGVQALMQVAGVSEEQKQLKPDDIGFRLGPRINAI 296 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ D + + LL D+ G A A + + +N RK + + +++EA+ L E Sbjct: 297 GRIGDPQMIIELLTTDDPGIALERAMQCEQINAKRKAMCEQIELEAVHLVENTPIPWKK- 355 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALE 413 L + WH GV+GI+ASR+ ER+ PV + ++GS R I+ ++ +AL+ Sbjct: 356 DRVLVVVQSNWHHGVIGIVASRLVERYGVPVFIGTYEENPSKIRGSARGIKEFNIFEALD 415 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 L + K+GGH A G SL F+QR ++L+P L+ V D + Sbjct: 416 FCGDL----LGKYGGHKAAGGFSLLAKNLDHFKQRLSTFAHQYLEPHHLKPLVSIDAEAN 471 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 ++T + Q + PWG P+F + ++L+QR+VG+ HLK++ + Sbjct: 472 FDQLTPLLHQSIDQLQPWGIGNEFPVFWTPNVQVLEQRIVGKNHLKLVFCQDNNENQMKA 531 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 +A+ + V +AYKL N + G +++I I I Sbjct: 532 VAWRWGEYFPL---PKRVDIAYKLKENNWNGETNIEIEIIGIR 571 >UniRef50_A8SGF1 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SGF1_9FIRM Length = 710 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 182/568 (32%), Positives = 281/568 (49%), Gaps = 29/568 (5%) Query: 15 TADLPAELPPLLRRLYASRGVRSAQELERSV---KGMLPWQQLSGVEKAVEILYNAFREG 71 + LL + A+RG+ E + + + L+ ++ A + ++ A G Sbjct: 49 VLAAQQKENALLAGILAARGITDPAEALTLLAGEEELSDPALLTDMDAACQRIWQAIDNG 108 Query: 72 TRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQ 131 I V GD+D DG T+TAL ++ +G +++ ++P+R DGYGLS + H +G Sbjct: 109 ETIAVFGDYDVDGVTATALLYQHLKGMG-ASVKCMLPSREGDGYGLSKNAIQSMHNKGCT 167 Query: 132 LIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAG 191 LIVTVDNGIS+ + A SLG+ +I+TDHHLP +TLP A A+++P D + P K L G Sbjct: 168 LIVTVDNGISAVEEADFAASLGMDLIITDHHLPPETLPKAVAVVDPRREDDHSPFKGLCG 227 Query: 192 VGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQG 251 GVAF L AL + L DL A+GTVADV+PL NR L G Sbjct: 228 AGVAFKLCAAL-----------DGCPPEEMLDYCGDLAAVGTVADVMPLVGENRTLVKAG 276 Query: 252 MSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 + +++ RPG ALLE + + A ++ +A+ PR+NAAGR+D+ + L+LC++ Sbjct: 277 LRQLQQT-DRPGFGALLEEVGLAGKPITAENISYAIAPRINAAGRMDNAVTALQLVLCED 335 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVG 371 A LA++L+ +N R+E EQ + A L E+ D + ++ +WH GV+G Sbjct: 336 PDRAEELAHKLNEINAHRQETEQQIFKAAEELLEQQPERLD--DRIMLLWGRDWHPGVIG 393 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 I+ASR+ ER RPVI G KGSGRS+QG ++ + L ++++GGHAM Sbjct: 394 IVASRLVERTGRPVIVVTIDEHGEGKGSGRSVQGFNLHACIGSCADL----LVRYGGHAM 449 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 AAGLS+ E+ ++R E P L + D + +T+E + L P+ Sbjct: 450 AAGLSVREENLPELRRRLNEWAAREC-PVLHTPPLTCDVTIHLDRITVESVRHLDQLAPY 508 Query: 492 GQMFPEPLFDGHFRLLQ-QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREV 550 G P P+F ++ V E + G L + F + P V Sbjct: 509 GAENPTPVFLLQSAVVDGVYPVSEG-RHSRLRLRQGNSCLYAVWFGMPAEQLPYALGDVV 567 Query: 551 QLAYKLDINEFRGNRSLQI--IIDNIWP 576 A L + + R Q+ I ++ P Sbjct: 568 DAALNLSV--YESARGAQLSGRIIDLHP 593 >UniRef50_Q0AYS8 Single-stranded DNA-specific exonuclease-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AYS8_SYNWW Length = 932 Score = 584 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 192/581 (33%), Positives = 290/581 (49%), Gaps = 28/581 (4%) Query: 1 MKQQIQLR-RREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLS 55 M+ I + + E + LL R+ RG+ +E R + + + QL Sbjct: 1 MRNWINGKYDETIVEKIAEELGISCLLARILVKRGISETEEANRFLYGKLEDLNDPFQLK 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++ AV + A G +I+V GD+D DG S + + ++ LG +N Y VP+RF +GY Sbjct: 61 DMDLAVARIEQAIAAGEKIVVYGDYDVDGVCSIVILLECLQLLG-ANCSYYVPDRFLEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL+ + +++ + G QL++TVD GISS A + A LG+ +I+TDHH P D LP A AII Sbjct: 120 GLNSDAIEKLASEGCQLLITVDCGISSLAEGQLACDLGMDLIITDHHRPLDKLPPAVAII 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP L S LAG GVAF L AL + L L+LVAL TVA Sbjct: 180 NPKLGGGA-GSSDLAGAGVAFNLAAALWR----------GRMEQEKLYNWLELVALATVA 228 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL ++NRI+ G+ +I R G++ALL + + L + F LGPRLN+AG Sbjct: 229 DIVPLRSDNRIMVKYGLKKIGQT-SRKGLRALLRETALEGKNLRTWHIAFVLGPRLNSAG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RL+ + LLL + A +A L +N+ RK IE+ + EA+ E + Sbjct: 288 RLNSARNSIELLLAQDEKRAASMAAFLCRVNEERKRIEETIFREAVAEIE--QHIDLEKD 345 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 L + +WH GV+GI+ASR+ E + RP I + GD +GS RSI G+ + AL+ Sbjct: 346 PILLLGGEKWHDGVIGIVASRLNEHYRRPCILISWEGD-CGRGSARSIAGIDIFAALDYA 404 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 G + +FGGH MAAGL LE F F+++ E SL E D + PA Sbjct: 405 S----GFLQQFGGHKMAAGLRLERRNFPAFKEKILEWAATQELSSLKPSERKIDAEIKPA 460 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 ++ + + L P G+ P PLF + L+G+ ++ L+GIA Sbjct: 461 DINEALLKELELLQPCGEGNPVPLFLLRQVSINSAALIGKGREHFKIKTEPD--ELEGIA 518 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 FN + L ++L NE++G + +Q+ + ++ Sbjct: 519 FNQAQYMELPWRNSCQDLLFELTENEYQGRKRIQLKVKDMK 559 >UniRef50_Q03F38 Exonuclease RecJ n=3 Tax=Lactobacillales RepID=Q03F38_PEDPA Length = 773 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 171/582 (29%), Positives = 285/582 (48%), Gaps = 32/582 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM----LPWQQLSGV 57 Q+ + +L + ++ +RG ++ +++ + L + Sbjct: 7 NWQVSKLDDVDIDQLASETKLSQTMVKIMVARGFKTGEDILSFIDEDMSIVHDPMLLHDM 66 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 +KA++ ++ A +I+V GD+DADG TST + + LG +N+ Y VP+RF+DGYG Sbjct: 67 QKALDRIFVAIESNEKILVYGDYDADGVTSTTIMYETLDQLG-ANVQYFVPDRFKDGYGP 125 Query: 118 SPEVVDQ-AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + + + G QLI+TVDNG++ + ++ A G VIVTDHH + LP A AII+ Sbjct: 126 NLKKYQHFINDEGVQLIITVDNGVAGNEAIKFAEDQGTNVIVTDHHEIPEVLPEAYAIIH 185 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P + +P L+GVGVAF + AL + + E LDL A+GT AD Sbjct: 186 PRHPEGAYPFGDLSGVGVAFKVATALLEEIPE---------------EFLDLYAIGTTAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V + NR L G+ I + R G++ L+E++ D D+GF + PR+NA GR Sbjct: 231 LVSMTDENRFLVKMGLEMIPNTQ-RIGLQKLIEISGVDVSHFDEQDIGFTVAPRINAVGR 289 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L++ S V LL + EA +A E++ +N R+ + + EA + Sbjct: 290 LENASRAVELLTTFDEEEATTIAQEINKINSKRQGLVSDIYTEAEEIA---LDDEHASRQ 346 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFA-PAGDGTLKGSGRSIQGLHMRDALERL 415 L + +WHQGV+GI+ASRI ER ++P I + G+G KGSGRS+ L++ +A+ + Sbjct: 347 TLVIAGHDWHQGVLGIVASRIVERTNKPTIVLSDQGGNGIYKGSGRSVAALNLFEAINPI 406 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 G FGGH MA G+++E D+ + + Q ++ D ++ Sbjct: 407 REKCVG----FGGHHMAIGVTVEADQLATLTDQLEKAAQLVNLDFKQQPQLQIDLKVNIE 462 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 E+T ++ ++ GP+G P P F R+ + + +G+ + G ++ IA Sbjct: 463 ELTEKLVSEMKILGPFGMNNPVPKFELEDVRVKEAKAIGKDGAHLKFTLDDGNQNINAIA 522 Query: 535 FNVDTALWPDNG-VREVQLAYKLDINEFRGNRSLQIIIDNIW 575 F N + L ++ NE+RGN S+Q + D+I Sbjct: 523 FKRGELADVLNNVANPISLVGTINTNEWRGNVSVQFMTDDIK 564 >UniRef50_B0PEB7 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEB7_9FIRM Length = 685 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 175/579 (30%), Positives = 296/579 (51%), Gaps = 29/579 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV---KGMLPWQQLSGVE 58 + I+ E A LPPL R+ A RG + + + R + + L ++ Sbjct: 5 RWNIRQADDEAARHAAKALGLPPLAVRILAGRGFDTQEAIRRFLTGDCALTDPMALRDMD 64 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 +AV+ + A EG +I V GD+D DG ST + + S G +++ Y +P+R +GYGL+ Sbjct: 65 RAVKRIRRAIAEGEKIAVYGDYDCDGILSTVVLYSYLESAG-ADVCYYIPHRDREGYGLN 123 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 E + G +L++TVDNGI++ V A S+GI V+VTDHH P D LP A A+++P+ Sbjct: 124 REALQIIRDDGVRLVITVDNGITAVDEVAFAASIGIDVVVTDHHKPRDMLPQAVAVVDPH 183 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 D + LAG+GVAF L+ AL E + L + DL+A+ TVAD+V Sbjct: 184 RLDDESGCEYLAGIGVAFKLICAL-----------EGDDGDLMLEQYGDLIAVATVADIV 232 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NR + +G+ +++ G+ AL+ V ++L+ ++ + + PR+N+AGR D Sbjct: 233 PLIGENRTIVRRGLESLQST-DNEGLAALIRVCGMADRQLSCENIAYGIVPRINSAGRFD 291 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 + V L E LA ++++LN+ R+ +E + + + + + + + Sbjct: 292 CVDNAVELF-SGGCDEPETLAGDINSLNEKRRAVEDQIVRQIMNQLDAQ--TEELGRRII 348 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 ++ WH GVVGI+ASR+ ERF +P I F+ GD +GS RSI+G + DA++ L Sbjct: 349 VIHGEGWHHGVVGIVASRMVERFGKPCIVFSVEGD-VARGSARSIEGFSIIDAIDACSRL 407 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 ++++GGH AAGL++ K F+ + P + Q + D +SP ++T Sbjct: 408 ----LIRYGGHNQAAGLTVSMANLKAFKNAINDWAASHY-PDMPQQTINIDCAISPRQLT 462 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ-QRLVG-ERHLKVMVEPVGGGPLLDGIAFN 536 +E L P+G P+F +LQ +G +H+++ G G + + F Sbjct: 463 VEEIAPLSMLEPFGSGNEPPVFTIRSCVLQGIYAIGDGKHVRLRFC--GDGCVFYAVYFG 520 Query: 537 VDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + A +P V LA +D+NE+ G + + + + +I Sbjct: 521 MTQANFPYTIGETVDLAVTVDVNEWNGEQRVSVKVRDIH 559 >UniRef50_B8FE66 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FE66_DESAA Length = 572 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 202/584 (34%), Positives = 302/584 (51%), Gaps = 23/584 (3%) Query: 1 MKQQIQLRRREVD--ETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 M ++ +L ++ E + +RG+R ER + + L Sbjct: 1 MNRRWKLCEPNLEAVEALSKYLGCHKAIAGAMVNRGIREPGAAERYLGPSLADLPSPFTL 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++KA+ + +A + I+V GD+DADG STAL + G + + + VP+R ++G Sbjct: 61 KDMDKAIARIIHAIQARENILVFGDYDADGVCSTALLTEFLLEAG-ARVFFHVPHRTQEG 119 Query: 115 YGLSPEVVDQ-AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 YG S + + ++ QL++TVDNGISSH +E A G+ VIVTDHH P +T P A A Sbjct: 120 YGFSSQHIRNPVLSKKIQLVITVDNGISSHEAIEEAGQAGVDVIVTDHHTPSETPPPALA 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 +I+P L C LAGVGVAFYL + LR +R+QG + E PNL DLVALGT Sbjct: 180 VIDPKLPGCPSGLDHLAGVGVAFYLCIGLRMAMREQGLWPEGK--EPNLKHKCDLVALGT 237 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +AD+VPL NRILT G+ + A RPG+KALL+V+ D ++A DL F PRLNA Sbjct: 238 IADMVPLIGENRILTRAGLEIMGAA-ARPGVKALLDVSAVDNSTVSAHDLAFRAAPRLNA 296 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 GR+D + V LLL + AR LA E+DALN+ R+ + + + AL+L + Sbjct: 297 PGRVDHANKAVELLLEKSNSRARQLAWEIDALNRKRQRMSEDLYHSALSLLKS--DHDLK 354 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 L M H WH GV+GI A+++ F+ PV+ + T KGS RSI G+ + AL+ Sbjct: 355 GKRSLVMAHSGWHPGVIGIAAAKLVREFNCPVVLISMDK-RTGKGSARSIPGVDLYQALQ 413 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 ++ FGGHA AAGL++++ + F+ F V E + + D ++ Sbjct: 414 AC----ESQLIAFGGHAQAAGLTIDDKSIETFRGMFDSQVLEKSTERDFERVLTIDYSVN 469 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPL-LD 531 P E+ + A + P+G PEP+F + Q VG H +++ G L Sbjct: 470 PMEIGPDFANQIESMAPFGIANPEPVFISTEVGIKQGPTVGRGHRRMVFHSGEGNTKPLQ 529 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 I FN L P +AY++ N ++ +++Q II+ I Sbjct: 530 AIWFNARDQLVPSIAGA---VAYRVQWNRWKDRQTVQAIIEGIR 570 >UniRef50_C5EEP4 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EEP4_9FIRM Length = 590 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 178/605 (29%), Positives = 297/605 (49%), Gaps = 57/605 (9%) Query: 9 RREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVEKAVEIL 64 ++ + P+ R+ +RG+ +++ + K + + L +EKAV IL Sbjct: 5 KKADFNKIAETYGISPVTARIIRNRGIEGMEDIGHYLHGSVKDLHDPRLLPDMEKAVGIL 64 Query: 65 YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124 +EG I +VGD+D DG ST L A++ +G +N+D+ +P+R +DGYG++ +++ Sbjct: 65 RGKVQEGKPIRIVGDYDIDGVCSTYLLYRALKRIG-ANVDFEIPDRIKDGYGINEMIIEA 123 Query: 125 AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP-------------------- 164 A G I+T DNGI++ + + A+ LG+ V+VTDHH Sbjct: 124 AAEDGIDTILTCDNGIAAVSQIARAKELGMTVVVTDHHDILVEESGNSGAGDDAGGQDGN 183 Query: 165 ----------GDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDE 214 + LP A+AI+NP +R C +P + G VA+ L+ L F+E Sbjct: 184 DADAEDSCQGTEVLPPADAIVNPKMRGCRYPFPGICGGMVAYKLVQVL---------FEE 234 Query: 215 RNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRD 274 + ++L++ A+ TV DV+ L NRI+ +G+ R+ G++ L+E N Sbjct: 235 CGVPAEEWLDMLEIAAIATVGDVMKLQGENRIIVKEGLCRLGHT-SNLGLRKLIEKNNLA 293 Query: 275 AQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQ 334 + + A +GF +GP LNA+GRL + + LLLC++ EA +A EL LN RK++ Q Sbjct: 294 SDSITAYHIGFVIGPCLNASGRLQTAKLALGLLLCEDEMEADRMAQELKELNDQRKDMTQ 353 Query: 335 GMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG 394 +A + ++L + L ++ P+ H+ + GI+A R++ER+ +P A +G Sbjct: 354 AGIDDAAAMVDELYQDD----KVLVVFLPDCHESLAGIVAGRLRERYGKPSFVLTRA-EG 408 Query: 395 TLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVT 454 KGSGRSI+ HM AL + L +LKFGGH MAAG SL E+ F++R E Sbjct: 409 CAKGSGRSIEAYHMFHALVEVKDL----LLKFGGHPMAAGFSLREEDVDEFRRRLNENAR 464 Query: 455 EWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ-QRLVG 513 E L V D + ++ + L P+GQ +P F +++ ++G Sbjct: 465 ERLTEDDFIPRVWIDVAMPFEYISESFVKELELLEPYGQGNEKPQFAQKNMVIRSASVMG 524 Query: 514 ERHLKVMVEPVGG-GPLLDGIAFNVDTALWPDNGVREV-QLAYKLDINEFRGNRSLQIII 571 V + V G ++G+ F + G V + Y +NE+ GNR+LQI++ Sbjct: 525 RNRNVVRLSLVNERGVSMNGVVFTEGDLFMEEKGNSRVMDIIYYPGVNEYNGNRNLQIVV 584 Query: 572 DNIWP 576 + Sbjct: 585 KDWKF 589 >UniRef50_B1YJG2 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Exiguobacterium RepID=B1YJG2_EXIS2 Length = 769 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 180/581 (30%), Positives = 281/581 (48%), Gaps = 35/581 (6%) Query: 2 KQQIQLRRREVDETADLPA--ELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLS 55 K+ + + + +L + + L RG +A + + ++ Sbjct: 5 KKTWIDKDVDSLKIDELADQVNVSRQVAHLLVQRGFDTADQAKAFLETDQTAFHDPFLFQ 64 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 + K + + A EG I++ GD+D DG +S A+ A+ +G + + +PNRF +GY Sbjct: 65 DMTKVITRIQQAADEGEMILIYGDYDVDGVSSAAILWHALIEVG-AMAECYIPNRFTEGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G + A G L++TVD GIS + LG+ +I+TDHH D LP A A+I Sbjct: 124 GPNEAAFRWAAEEGFGLVITVDCGISGIEEAAVLKELGVDLIITDHHEAKDVLPDAFAMI 183 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P D N+P LAG GVAF + AL + + ELLDL LGT+A Sbjct: 184 HPG-VDSNYPYSKLAGAGVAFKVAHALLGRVPE---------------ELLDLAVLGTIA 227 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL NR+L +G+ + A + RPGI AL +V + +L +GFA GPR+NAAG Sbjct: 228 DLVPLIGENRLLAAKGIEALNASE-RPGILALRKVCSLVEDELTEESVGFAFGPRINAAG 286 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RLD + +LL + + EA LA +LD N+ R++I + + EA L E+ S Sbjct: 287 RLDSAMPALEMLLAETMEEAEPLAEQLDQQNKQRQDIVKKIAEEATALVEQHYLSD---- 342 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALER 414 L + +W+ GVVGI+ASR+ E++HRPVI + GT KGSGRSI + L + Sbjct: 343 RVLVVDSDQWNPGVVGIVASRLVEKYHRPVILLCHDAEKGTAKGSGRSIAAFDLFAELNQ 402 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + P FGGH AAG++L + + ++R L D L Sbjct: 403 TADILP----HFGGHPAAAGMTLSSENVPVLRERLNAQAAS-LPDEAFIATTEIDLRLRV 457 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGHFR-LLQQRLVGERHLKVMVEPVGGGPLLDGI 533 +++++ + + + P+G P P + + +G + V G LDGI Sbjct: 458 SDVSIGLIEEMGRLSPFGMGNPSPRVVVEGANIRDLKRIGRDLTHLKVLVTDGKTELDGI 517 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 F A+ + + EV L L+INE+ G R Q++I ++ Sbjct: 518 GFGFGDAVDEVSSLAEVSLMGSLNINEWNGFRKPQLMIQDL 558 >UniRef50_C6NUA0 Single-stranded-DNA-specific exonuclease recJ n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUA0_9GAMM Length = 577 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 248/577 (42%), Positives = 342/577 (59%), Gaps = 16/577 (2%) Query: 4 QIQLRRREVDETADLPAE--LPPLLRRLYASRGVRSAQELERSVKGMLPWQQ---LSGVE 58 + Q R E L P+L RLYA+R VR ++L V+ + P + L G+ Sbjct: 3 RWQQRPLLAPEILAEAKRVALDPVLARLYAARAVRETRQLRLDVEQLSPGEGDQGLLGLG 62 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 A E+L +A R+ + +VGD+D DGAT+TAL A+ G + Y+VP+RF GYGL+ Sbjct: 63 AAAELLADAVRQQRVVCIVGDYDCDGATATALLHEALSLCGARALRYVVPDRFRWGYGLT 122 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 PE+V Q A +++VTVDNGI+S GV A++ + VI+TDHHLPG LPAA+AI+NP Sbjct: 123 PELVAQLPAD-TEIVVTVDNGITSVDGVAAAKARNLQVIITDHHLPGAVLPAADAIVNPR 181 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 C FP KS +GV VAFYL A+R L D+G+ P+ +L DLVALGTVADVV Sbjct: 182 QPGCPFPWKSSSGVAVAFYLAAAVRRRLLDRGYL---GAGAPHFGQLWDLVALGTVADVV 238 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 L+ NNRIL QG+ R+R+G+ RPG+ ALLE A + + A+ LGF L PR+NAAGRL+ Sbjct: 239 ALEHNNRILVQQGLKRLRSGRARPGLAALLECAGVEPAAVTAATLGFTLAPRINAAGRLE 298 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 DM +G+ LLL + EA LA LD LN+ R+ IE M A + + L L GL Sbjct: 299 DMGLGIRLLLSQDRAEAAELARTLDELNRQRRAIETQMSEAAQQIVDDLPDCGHNL--GL 356 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 ++ PEWH GV+GI+A R++ER+HRP IAFAP GDG L+GSGRSI GLH+RD+L Sbjct: 357 CVFQPEWHAGVIGIVAGRLRERYHRPAIAFAPVGDGFLQGSGRSIAGLHLRDSLADCVAR 416 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 P ++ +FGGHA AAGL L F + ++ E L L+ V DGPL + + Sbjct: 417 APHLLERFGGHAAAAGLRLRRAHLDEFVALWNTVLAERLTTEDLEESVFHDGPLESSSLD 476 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD 538 +E+A+ L AGPWG FPEPLF G FR+ +++ + H ++ + G G + I F Sbjct: 477 LELARRLEAAGPWGNGFPEPLFWGRFRICERKALPGGHWRLHL-DDGAGRRFEAIRFRS- 534 Query: 539 TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 V+ Y ++N + G LQ+ + + Sbjct: 535 ---PELPPGPWVEALYVPEVNRYAGTERLQLRLHALR 568 >UniRef50_Q6F719 SsDNA exonuclease, 5'--> 3' specific , Mg dependent n=2 Tax=Acinetobacter RepID=Q6F719_ACIAD Length = 568 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 251/574 (43%), Positives = 365/574 (63%), Gaps = 12/574 (2%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVE 62 + IQ+++R + D ++P + + A RGV S Q+L+ +K +L L G++ A+ Sbjct: 2 RTIQIKQRPLLTHPDQFQDVPEFIAHILARRGVDSIQQLDLKLKYLLK-PTLKGLDTAIA 60 Query: 63 ILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVV 122 ++ A + +II+VGD+DADGATSTAL LA++ +G + +DY+VP+RF+ GYGL+P + Sbjct: 61 LIDQAIDQQQQIIIVGDYDADGATSTALMCLALKEMG-ARVDYIVPDRFKYGYGLTPAIA 119 Query: 123 DQAHAR-GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 D AH + +L++TVDNGISSHAGVE A+ LG+ VI+TDHHL + P AEA++NPN + Sbjct: 120 DLAHQQCQPELLITVDNGISSHAGVEQAQQLGMKVIITDHHLTTKSAPDAEAVVNPNQLN 179 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 C FPSK+LAGVGVAFYL+ L + + + LDLVALGT ADV LD Sbjct: 180 CPFPSKALAGVGVAFYLLAHL------SSLRQAHHKPSCKITQYLDLVALGTYADVASLD 233 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NNRIL G+ RI+ +CR GI ALL++A RD L A DLGF LGPR+NAAGR+D M+ Sbjct: 234 YNNRILVDAGLKRIQQQQCRAGILALLDIAKRDPSTLKAQDLGFVLGPRINAAGRMDSMN 293 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 +G+ LL ++ A +A +L+ LN R+++E M+ +AL E ++ + +P L M+ Sbjct: 294 IGIECLLASDLETAYPIAEQLNRLNLERRQVETEMKQQALGYLEDIQLQHENIPPALVMF 353 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDG-TLKGSGRSIQGLHMRDALERLDTLYP 420 WHQGV+GI+A R+KE+FHRP I FAP DG +KGS RSI+G+H+RD +E++ +P Sbjct: 354 AENWHQGVIGIVAGRLKEQFHRPSIVFAPDTDGEHIKGSARSIEGIHIRDTIEQVAEQHP 413 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 ++ FGGHA AAGL+L++ F+ F+ F + +D +LLQ + +DG L + +E Sbjct: 414 HLVSHFGGHAAAAGLTLKKSHFEEFKNVFTACIA-QMDETLLQAVLWTDGSLPAQAIDLE 472 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA 540 + GPWGQ FP P F+G F +L R + + HLK+ + G +D IAFN Sbjct: 473 TVDWIERLGPWGQKFPLPQFEGRFEVLDYRWLKDIHLKLKLGLGEYG-SVDAIAFNAAQK 531 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 D + V L Y+LD NEF G+ +LQ+ I ++ Sbjct: 532 FDFDPMKKHVNLVYELDRNEFNGSVNLQLRILHL 565 >UniRef50_C5RCA3 Recombination protein J n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RCA3_WEIPA Length = 768 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 183/583 (31%), Positives = 291/583 (49%), Gaps = 39/583 (6%) Query: 2 KQQIQ---LRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 + Q + + ++ +T + L+ ++ +RG + + ++ + L Sbjct: 5 RYQWEFPEVSNQKAVKTISEAFGVTELIAKILVNRGYDTIEAANAFLRPDLSGLYDPFLL 64 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++KA+ L A G +IIV GD+D DG TSTA+ A+ +G +N+DY VP+RF DG Sbjct: 65 HDMDKAITRLMQAIDNGQKIIVYGDYDVDGMTSTAIMTWALELMG-ANVDYFVPSRFSDG 123 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + + A G QL+VTVDNG+S V S GI VI+TDHH + LP A AI Sbjct: 124 YGPNLANYQRFAAEGMQLLVTVDNGVSGKDEVAWLMSQGIDVIITDHHELPEELPIATAI 183 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 ++P + +P L+G GVAF + AL E+LDL ALGTV Sbjct: 184 VHPRHPEGEYPFGGLSGAGVAFKVASALLEE---------------PADEVLDLAALGTV 228 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 ADV+ L NRI+ QG+ + RPG+ ALL A + +S +GF + PRLNA Sbjct: 229 ADVMSLTDENRIIVKQGLENL-KLDPRPGLAALLAAAGTQLSDIDSSTIGFTIAPRLNAL 287 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRL+D + GV LLL D+IG+A+ LA+ +++LNQ R+++ + + + ++ Sbjct: 288 GRLEDATTGVQLLLMDDIGDAKPLADHINSLNQERQQLVTTIT-----AAAQEQAAQLRD 342 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 L + WH+GV+GI+AS++ E+ +P I GD KGSGRS+ + AL+ Sbjct: 343 DPVLVVAGENWHEGVLGIVASKLVEQTGKPTIVLNINGDEM-KGSGRSVPFFDLFTALDG 401 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 L M FGGHA AAG+++ + + + + + + + +S Sbjct: 402 HRDL----MTAFGGHASAAGMTVPTNNLTALRAALHDAAAQQELANAQKPNLQIAAKVSA 457 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGHFR-LLQQRLV-GERHLKVMVEPVGGGPLLDG 532 A+ T E L+ P+G+ PEPLF + Q + + +HL+ + + L Sbjct: 458 ADFTKENFDNLQVLAPFGEGNPEPLFMLDLLGVNQVKTMSDGKHLRFIAQTDTD--QLPV 515 Query: 533 IAFNVDTALWPDNGV-REVQLAYKLDINEFRGNRSLQIIIDNI 574 IAF G +Q+ + N +RGN S Q+++ ++ Sbjct: 516 IAFGWGNQASALAGHFSSLQIIGTMSQNSYRGNISYQLMLRDM 558 >UniRef50_C5QT22 Recombination protein RecJ n=2 Tax=Staphylococcus RepID=C5QT22_STAEP Length = 762 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 174/582 (29%), Positives = 293/582 (50%), Gaps = 38/582 (6%) Query: 2 KQQIQLRRRE--VDETADLPAELPPLLRRLYASRGVRSAQELERSVKG---MLPWQQLSG 56 K L + E +L P+++++ S+ + + ++ ++ LS Sbjct: 10 KYNWDLAEPTEYITEELAKELKLSPIVKKVLESKNLVQEEMIQDVLQDKIINHDPWALSD 69 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV+ + A + RI+V GD+DADG TST + V + LG + + + +PNRF +GYG Sbjct: 70 MQKAVDRINLAIDKSERILVYGDYDADGVTSTTILVNTLSQLG-AQVGWYIPNRFSEGYG 128 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + A+ G LI+TVDNGI H ++ + LG+ VIVTDHH G TLP A AI++ Sbjct: 129 PNALAFQNAYEEGTSLIITVDNGIQGHEEIKMVQDLGVDVIVTDHHEIGRTLPEAYAIVH 188 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P + ++P + L G GVA+ L AL + Q L L A+GT+AD Sbjct: 189 PMHPEFSYPFQYLCGAGVAYKLAQALISHPPQQ---------------FLALAAIGTIAD 233 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V L NR + QG++ + I+A+L+ A + + +GF +GPRLNA GR Sbjct: 234 LVSLTDENRSIVKQGLNILNNN-APVSIQAILKQAGYN-DNINEETIGFIIGPRLNAVGR 291 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L+D S+ LL+ + I EA LA +++ NQ RK+I + EAL L E+ + Sbjct: 292 LEDASLAAELLMSEEIEEAEFLAEQVEHFNQERKDIVSEITEEALALAEEQVQQGHLF-- 349 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERL 415 L + WH+GV+GI+AS++ E + P + KGS RSI + M + L Sbjct: 350 -LLLAKENWHEGVLGIVASKVVETYALPTLILNIDLEQNHAKGSARSIDQVSMFEILNA- 407 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + ++ KFGGH MAAG++++ + ++ + + + + + L+ D L Sbjct: 408 ---HQDLISKFGGHHMAAGMTMDIENIDELRKGLNDWMRQLAETTSLEPRKHVDVLLDER 464 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGE--RHLKVMVEPVGGGPLLDG 532 E++++ + ++ P+G F P F + + +G+ +HLK+ + G + Sbjct: 465 EISVKNIRDIQRLRPFGTDFNSPTFELKDLNVQSIKAIGQDGKHLKLSL----GENQIAA 520 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + ++ + V L +L INE+ GN+S Q+II +I Sbjct: 521 LYWSNGHLANELEIGQPVNLIGQLQINEWNGNQSPQLIIQDI 562 >UniRef50_C7XTQ6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XTQ6_9LACO Length = 769 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 173/581 (29%), Positives = 296/581 (50%), Gaps = 33/581 (5%) Query: 2 KQQIQ---LRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 K + Q + ++ ++ L L +RG +S E++ +K + +L Sbjct: 5 KYEWQRVANQDVDLVNNIQEQCQINAALANLLVARGFQSVHEVQLFLKPQLQQIQKPDRL 64 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++KAV + A ++G +I V GD+DADG T+TA+ + SLG + ++Y +P+RF+DG Sbjct: 65 HDMDKAVARITQAIKQGEQITVYGDYDADGMTATAVMFETLESLG-AKVNYYIPDRFKDG 123 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + + + G QL+VTVDNG++ V A G+ V++TDHH LP A AI Sbjct: 124 YGPNQDAYQRLITGGTQLLVTVDNGVTGKKEVAFAHDQGVDVVITDHHSLPVELPNAVAI 183 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 ++P + L+GVGVAF + AL ELLDLVA+G + Sbjct: 184 VHPQYPGDLYQYGDLSGVGVAFKVAWALLGEFPT---------------ELLDLVAIGEI 228 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+V + N +L G+ +++AG RPGIKALL++A + L + D+ F L PRLNA Sbjct: 229 ADLVSMAKENHVLVKFGIQQLQAG-LRPGIKALLKIAGVQEESLTSQDVSFKLAPRLNAL 287 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ + + GV LL + A LA ++D N+ R+++ + + EAL + + Sbjct: 288 GRIANGNEGVKLLTTVDEDAAEQLAKDVDQCNRQRQDLVEQITQEALQKAQA---PDNLR 344 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALE 413 L + +WHQGV+GI+ASR+ E+ +P I + G+ KGSGRS+ G + AL Sbjct: 345 RRTLLIVGHDWHQGVLGIVASRLVEKTGKPTIVASVNHGELVAKGSGRSVDGYDLFAAL- 403 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + ++ FGGH MA G+S + + + + + ++ G L Sbjct: 404 ---DPHRKLLTAFGGHVMACGMSFMITQVPAIAKVLEQAAEAQHLDANQKPRLMIAGTLQ 460 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 P E+T ++ Q ++ P+G EP+F+ + +R +G+ + + G LD Sbjct: 461 PDEITEKLYQQIQQLAPFGPDNEEPIFEITDPIITSKRQMGKNNEHLKFTLKGTRQSLDV 520 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 +AF + + + ++L K+ +N ++G + Q+++++ Sbjct: 521 LAFGKGSNVDFFSPGVHLKLVGKVAVNSWQGRTTPQLLLED 561 >UniRef50_D0MFV1 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFV1_RHOM4 Length = 587 Score = 579 bits (1494), Expect = e-164, Method: Composition-based stats. Identities = 199/592 (33%), Positives = 302/592 (51%), Gaps = 35/592 (5%) Query: 2 KQQIQLRRREV----DETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQ 53 K + R LP L R+ +RG+ + + + + Sbjct: 3 KYRWVRRPLPDPSAVATLMAAARYLPEPLARVLVARGITTVEAARAFFRPELDQLHDPFL 62 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 ++ +E A L A + +++V GD+D DG T+TAL ++ G + Y VP+RF Sbjct: 63 MADMEAAARRLARAIEDREQVLVYGDYDVDGTTATALVTSFLKERGVP-VRYFVPDRFRH 121 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYGL+ + +++A G +L++ +D GI++ +AR+ G+ +I+ DHH G TLP A A Sbjct: 122 GYGLTQKALEEALEAGTRLLIALDCGITAAEEAAYARARGVDLIICDHHTAGATLPEAVA 181 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 +++P DC +P L+G VAF L+ A L + + LDLVAL T Sbjct: 182 VLDPKRPDCPYPFPELSGCAVAFKLVQATLQVLGE---------SPEAAYRYLDLVALST 232 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 AD+VPL NRIL +G+ +R RPG++ L A + L + F L PR+NA Sbjct: 233 AADIVPLTGENRILMAEGLRHLRRST-RPGLQQLAARARWPLETLTMHGIVFGLAPRINA 291 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGRL D + VALLL ++ A LA ELDA N+ R++I++ EA+ E+ +RD Sbjct: 292 AGRLGDANRAVALLLAEDAATADKLAAELDAANRERQQIDRRTLEEAIVQAERQITARDD 351 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 L +YHP+WH GV+GI+ASRI ERF+RP I D LKGS RSI G+++ +AL Sbjct: 352 -RHALVLYHPDWHLGVIGIVASRIVERFYRPTILLCAV-DSILKGSARSIAGINIYEALR 409 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + L +L+FGGH AAGL+LEE++ + F++RF E V + P LL + D L Sbjct: 410 DCEDL----LLQFGGHTYAAGLALEENRLEAFRERFNEAVGARMTPELLVPRLEIDALLD 465 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHF--RLLQQRLVG--ERHLKVMVEPV--GGG 527 + +LL+ GP G EPLF + + +LVG +HLK V Sbjct: 466 LHTLDERFWRLLQRFGPHGPENEEPLFMARDLEVVGEPKLVGGEGKHLKFYVRQRAHPDD 525 Query: 528 PLLDGIAFNVDTALWPDN----GVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 P + I F + L + + LA+ L N ++G LQ+ + ++ Sbjct: 526 PPCEVIGFGKERLLPAVQHSRRMGQPLALAFTLQENTWQGQTRLQLRLRDLK 577 >UniRef50_B2GBD3 Single-strand DNA-specific exonuclease n=21 Tax=cellular organisms RepID=B2GBD3_LACF3 Length = 765 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 196/584 (33%), Positives = 296/584 (50%), Gaps = 42/584 (7%) Query: 2 KQQIQLR---RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 K Q + +E + LP L L ++G++SA +R + + L Sbjct: 5 KYAWQGQANGDKETIQVVADATGLPAELAALLVNQGIKSADAAQRWLNPQAEDLHTPDAL 64 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 V++AVE + A G +I V GD+DADG T+T L A+ +LG + +DY VP+RF DG Sbjct: 65 HDVDRAVERIMAAVEAGEKITVYGDYDADGITATTLMYEALETLG-AQVDYYVPDRFTDG 123 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + V + G QLIVTVDNG++ A +E+A+ G+ V++TDHH + LP A AI Sbjct: 124 YGPNQAVYQRLIEGGTQLIVTVDNGVAGLAAIEYAKEQGVDVVITDHHALPEQLPPAVAI 183 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 ++P +P L+GVGVAF + AL E+LDLVA+G + Sbjct: 184 VHPQYPGSEYPFADLSGVGVAFEVAWALLGEFPV---------------EMLDLVAIGEL 228 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+V L N L G+ ++R G RPG+ ALL++A L +D+GF L PRLNA Sbjct: 229 ADLVSLAGENHALVALGLQQLRQG-SRPGLHALLKLAGVKEATLTGTDVGFQLAPRLNAL 287 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR++ GV LL + EA LA E+D N+ RK++ + + EAL + + Sbjct: 288 GRIEQAGPGVVLLSTFDEEEAERLAKEVDQTNEERKQLVEQITKEALAMAANQQ------ 341 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAF-APAGDGTLKGSGRSIQGLHMRDALE 413 L + WHQGV+GI+A+ + + +P I A G+ KGSGRS+ GL + AL+ Sbjct: 342 VPALVLVGHGWHQGVLGIVAAHVVQATGKPTIVASANEGETIAKGSGRSVDGLDLFAALD 401 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + L M FGGHAMA G+S E Q E VT + + L+ Sbjct: 402 QHRDL----MTAFGGHAMACGMSFELTAAAPLQAALNEEVTAQGFNQQQKPPLKITLTLA 457 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFR-LLQQRLVGER--HLKVMVEPVGGGPLL 530 P +T ++ ++ P+G EP + + + +++G+ HLK+ V G P L Sbjct: 458 PDRLTQDLYTQIQRLAPFGPGNEEPQIELDVKGPVATQVMGKDKSHLKLKV----GQPPL 513 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 D +AF + EV+L L +NE+RG S Q+++ ++ Sbjct: 514 DVVAFGKASLAPALAEAEEVKLVGTLSLNEWRGKTSCQLMLTDV 557 >UniRef50_Q67LM2 Single-strand DNA-specific exonuclease n=1 Tax=Symbiobacterium thermophilum RepID=Q67LM2_SYMTH Length = 853 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 200/585 (34%), Positives = 306/585 (52%), Gaps = 37/585 (6%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGV 57 + + + + P+ ++ +RG+ + + + + + L + Sbjct: 9 RWRPEPADPAGARLLSRQLSISPVTAQVLINRGLTTPEAAQAFLTPGRDRIHDPFLLKDM 68 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 +AV+++ R G I+V GD+DADG T+TA +LA + + Y +P+RF +GYGL Sbjct: 69 REAVDLIRARLRSGGPIMVYGDYDADGVTATATLLLA-LRALGAEVAYYIPDRFREGYGL 127 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + + ARG IVTVD G+++ A + AR LGI ++VTDHH PG LP A++NP Sbjct: 128 NAGALRSIRARGYDFIVTVDTGVAAVAEAQVARELGITLVVTDHHEPGPVLPDVPALVNP 187 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 DC +P K LAGVGVAF L LAL PN +LLD+V LGTVAD+ Sbjct: 188 RRPDCTYPFKGLAGVGVAFKLALAL---------------GAPNAWDLLDIVTLGTVADM 232 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 +PL NR + +G+SR+ A RPG++AL++VA + A +GFALGPR+NA GR+ Sbjct: 233 MPLVDENRAIVREGLSRLGATH-RPGLRALMQVAGVQP-PVTAGHVGFALGPRINALGRM 290 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 GV LLL ++ A LA LD N+ R+EIE + L + + Sbjct: 291 SSAEAGVELLLTEDPARAEELARRLDEENRARQEIEAAILE--EALAQAAALPPEEREYA 348 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 L + WH GVVGI ASR+ E +HRP I + GD ++GS RSI G HM+ AL ++ Sbjct: 349 LVLAGEGWHHGVVGICASRVLEVYHRPTILLSIEGD-EVRGSARSIPGFHMQRALLQMSE 407 Query: 418 LYPGMMLKFGGHAMAAGLSLE-EDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 L+ +FGGHA AAGLSL D ++R L EWL P L E D ++ + Sbjct: 408 LF----TRFGGHAAAAGLSLRGRDLVPELRRRMNRLAAEWLRPEDLVPEQRVDAFVALDQ 463 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGER--HLKVMVEPVGGG--PLLD 531 + + + L P+G P P+ +++ R +G HLK+ + P G G ++ Sbjct: 464 IDEGLIRELEALEPFGLGNPAPVLATDGLQVVDGRAIGRNGQHLKLFLRPDGDGAAAPVE 523 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + +N+ A+ R + +AY+ +IN + G +Q+++ ++ P Sbjct: 524 AVGWNMAVAMPE--PGRRIAVAYEPEINTYMGRSRIQLVLKDMKP 566 >UniRef50_C6XU81 Single-stranded-DNA-specific exonuclease RecJ n=7 Tax=Bacteroidetes RepID=C6XU81_PEDHD Length = 567 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 173/585 (29%), Positives = 297/585 (50%), Gaps = 30/585 (5%) Query: 1 MKQQIQLR---RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQ 53 MK++ +E + L ++ RG+ S +E + + + Sbjct: 1 MKKRWVQALQGNKETTALLAQQLNIDSSLAQILVQRGISSFEEARQYFRPDMGRLHDPFL 60 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 + ++KA+E + A +I+V GD+D DG TS AL+ I Y +P+R ++ Sbjct: 61 MKDMDKAIERIDKAINSREKILVYGDYDVDGTTSVALAFSFFSQF-TDQIGYYIPDRHKE 119 Query: 114 GYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 GYG+S +D A+A G LI+ +D GI S + +A SL I I+ DHHLPG+ LPAA A Sbjct: 120 GYGISTAGIDYANANGISLIIALDCGIKSTDKIAYANSLNIDFIICDHHLPGEVLPAAVA 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 I++P +DC +P K LAG G+ F L A + + + LDLV + Sbjct: 180 ILDPKRKDCPYPFKELAGCGIGFKLAQA---------YCLQHRLPQEQYERYLDLVMVSI 230 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 AD+VP++ NRIL + G+ ++ + C G+KAL++++ ++ + +D+ F L PR+NA Sbjct: 231 AADIVPIEDENRILAYHGLIKLNSNPC-IGLKALMDISGKN-KDYTLTDVVFTLAPRINA 288 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGR+D + V +LLC A+ + ++ N RK +Q M EAL L + E + Sbjct: 289 AGRMDHANQAVKMLLCTEDNLAQEQSLLINLQNTERKTSDQNMTAEALALIAECEILINK 348 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 +YH W++GV+GI+ASR+ E+++RP + + +G L GS RS+ G + +AL Sbjct: 349 KTT--VVYHENWNKGVIGIVASRLTEKYYRPTVVLTKS-NGLLTGSARSVAGFDLYEALL 405 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + L +++FGGH AAGL+++ + F +RF +V + LL E+ D + Sbjct: 406 GCEDL----LVQFGGHKFAAGLTIKAEDIGFFTERFENIVAATITEDLLCPEISIDNEIR 461 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGH--FRLLQQRLVGERHLKVMVEPVGGGPLLD 531 ++ + +++ P+G P+F H F + +VG +HLK+ ++ + + Sbjct: 462 LRQIDGKFQRIIAQMAPFGPHNMAPVFVSHEVFLASKPYVVGTKHLKLAIKQ-QNSSIFE 520 Query: 532 GIAFNVDTALWP-DNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 IAF + + + Y ++ N ++ + LQ+ I I Sbjct: 521 CIAFGMAEEYEQLLQPNQPFSVCYTIEENIWKAQKRLQLNIKEIK 565 >UniRef50_UPI00016BFB11 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFB11 Length = 679 Score = 577 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 164/577 (28%), Positives = 290/577 (50%), Gaps = 29/577 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQ---ELERSVKGMLPWQQLSGVE 58 + + +++ ++ + A++ + + L + + L ++ Sbjct: 5 NYEWKFLSNNPNKS---------IIDNILAAKNILDSDKESFLNPKIADLHDPFALLDMD 55 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 KAV + +A + +I + GD+DADG TST++ + + +G + ++Y +PNRF +GYG++ Sbjct: 56 KAVIRILDAISQKQQITIYGDYDADGITSTSVLYMFLTEVG-AKVNYYIPNRFTEGYGMN 114 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 + + LIVTVDNGI++ A V+ ARS GI VI+TDHH D +P A I+N Sbjct: 115 IDAILYLADNKTDLIVTVDNGITAIAEVDFARSKGIDVIITDHHQCLDQIPDAHCIVNYK 174 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 +C +PS++LAGVG+ F L+ A+ T L+ + + LDLV++GT+AD+V Sbjct: 175 RPNCTYPSQNLAGVGIVFKLITAIATTLKLS--------LEEYVYKYLDLVSIGTIADMV 226 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL +R++ G+ I + PG++ALL + N+++Q + + + F + PR+NA R+ Sbjct: 227 PLLQESRVIASLGLKLITHTR-NPGLRALLNIINKNSQPITSYTIAFQVAPRINAISRMS 285 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 D ++ + L + A LA LD N RK E + A + + L Sbjct: 286 DANLAIELFTTQDTQRAATLAQLLDNNNIKRKAKEAEIVTAAFEYVKN--NIDLSKEKVL 343 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + +WH GV+G++AS+I + ++RP I GD + GS RSI G + +A+ Sbjct: 344 VITGTDWHHGVLGLVASKISQHYYRPTIVCTLDGDKYV-GSARSIDGFSIINAITEQ--- 399 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 ++K+GGH AAGL++ K + F + + E LD LL ++ D + +E+T Sbjct: 400 -QQYLIKYGGHTQAAGLTISASKIRNFTEDINKANYEILDKQLLTPKIYIDATVPLSEVT 458 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD 538 +++ L P GQ P+ ++ + +G+R + + LD I F+ Sbjct: 459 IDLYNSLSALEPCGQNNSSPILLVKGKISKIIHMGKRSEHLKIILEDNNKFLDVIIFSQG 518 Query: 539 TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 N EV++A + NE+ G ++Q ++ I Sbjct: 519 QLSNFLNKGEEVEIAGSISKNEWNGKTTIQFMMTAIR 555 >UniRef50_A4XHU1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Clostridia RepID=A4XHU1_CALS8 Length = 803 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 191/582 (32%), Positives = 306/582 (52%), Gaps = 32/582 (5%) Query: 2 KQQIQLRRREVDETADLP---AELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 K++ L+ E + D+ ++ P + ++ +RG+ ++E+ + + L Sbjct: 5 KKRWVLKECENFDDFDIQIDGRKIRPQIIKVLKNRGIVQKDDIEKFLAPAIKNLHNPFLL 64 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 + +++A+ I++NA R+++ GD+D DG TST L ++ Y +PNRF+DG Sbjct: 65 NDMKEAINIVHNAILHKKRVLIYGDYDCDGVTSTYLLYSNLKKF--LPTSYYIPNRFKDG 122 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YGL+ +++ + +++TVD GIS+ +E+ + G VIVTDHH P D LP A+AI Sbjct: 123 YGLNLDILKRL-EDTFDILITVDTGISAINEIEYLKQKGKIVIVTDHHEPKDKLPIADAI 181 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 INP RD +P + LAGVGVAF L+ AL + + L++ LD+VA+GT+ Sbjct: 182 INPKRRDSTYPFRDLAGVGVAFKLLHAL-----------KLSGLEIKLSKYLDIVAIGTI 230 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ-KLAASDLGFALGPRLNA 293 ADV+PL NRI G+ ++ + G+K L+EVA ++ +L D+ F +GPRLNA Sbjct: 231 ADVMPLVDENRIFAKFGLKLLKYTR-NIGLKKLIEVAGLSSKEELKPFDVSFIIGPRLNA 289 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGR+ D ++ ++LLL D++ EA +A LD N+ R+EIE+ EA + Sbjct: 290 AGRISDANLAMSLLLSDSLVEAEKIARRLDEENRKRQEIEEKTIKEAQKII--TLNKDIL 347 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 + WH GVVGI +S+I E+++RP + F +G LKGSGRSI+G ++ +AL+ Sbjct: 348 RKKIFVLSSQSWHPGVVGIASSKITEKYYRPSLLFTFTDEGILKGSGRSIKGFNLFEALK 407 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + +LKFGGH AAGLSL D F + + E + + V D LS Sbjct: 408 NCSDI----LLKFGGHEHAAGLSLVSDNFDKLDEILNAIAQE-YHFMIFKPAVEIDLVLS 462 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLL-QQRLVGERHLKVMVEPVGGGPLLDG 532 E+ E+ + P+G PEP F ++ R +GE + K G G D Sbjct: 463 LNEIDDELIDQVYLLEPFGVGNPEPTFLIKNIIVENFRFMGEDN-KYYKFFTGNGTKYDV 521 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + F+ +++V + KL+ N F R Q + +I Sbjct: 522 VCFSNLEDEDELVTMKKVDIVCKLEKNIFNSTRRNQFNLIDI 563 >UniRef50_B9E712 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E712_MACCJ Length = 753 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 186/584 (31%), Positives = 298/584 (51%), Gaps = 40/584 (6%) Query: 1 MKQQIQLRRREVDETAD---LPAELPPLLRRLYASRGVRSAQELERSV--KGMLPWQQLS 55 M + + ++ VD ++ + R++ SR + + L + + Sbjct: 1 MDKTVWTVKKPVDTIPAALIKKYDITEINRKILESRHIVTEAALHDIFVADDIHDPFAMH 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 + KAV+ + A I+V GD+DADG TS + V +++S+G + + + +PNRF +GY Sbjct: 61 DMSKAVKRIQTAIDNNEMILVYGDYDADGVTSVTVLVNSLKSIG-AKVGWYIPNRFTEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G + + +AH G LI+TVDNGI H V A LGI VI+TDHH G TLP A AI+ Sbjct: 120 GPNEQAFREAHDAGISLIITVDNGIQGHHEVNVANELGIDVIITDHHEIGQTLPDAYAIL 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P D ++P LAGVGV++ L AL + + LL VA+GT++ Sbjct: 180 HPMHPDGSYPFHHLAGVGVSYKLACALNGQMNEH---------------LLGFVAIGTIS 224 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+V L NR L +G+ + G+KALL+ A+ + ++ +GF +GPRLNA G Sbjct: 225 DLVSLTGENRALVKRGLKALN-VDTPIGLKALLKQASFNG-EITEETVGFIIGPRLNAVG 282 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RLDD + LL DN EA ++ ++D N RKEI + +AL E+ + + Sbjct: 283 RLDDARLACELLQIDNEDEAEWMSEQVDQFNIERKEIVSSITEQALIDVEEKIANGN--- 339 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALER 414 + + W++GV+GI+ASRI E++H P I D G KGS RSI + M D+LE Sbjct: 340 RFIVVAKEGWNEGVLGIVASRITEQYHLPAIVLNIDYDKGYAKGSARSIAQVSMYDSLEE 399 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 L + KFGGH MAAG++L + + +Q + +D ++Q E+ D + Sbjct: 400 TRNL----ITKFGGHHMAAGMTLPIENIERLEQALNNHLDTLIDGEIIQ-EIEIDAAVEM 454 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGER--HLKVMVEPVGGGPLLD 531 +++T++ + P+G F PL + +L + +G+ HLK+ V+ L+ Sbjct: 455 SDITIKNINDMDKLRPFGTDFSAPLLSLMNAKLTDVKQIGQNQAHLKMTVQ-----NTLN 509 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + +N + +V LA L +NE+ GN Q+I+ +I Sbjct: 510 ALMWNEGARISGLPVGSQVNLAGTLQLNEWNGNVQPQMIVRHIK 553 >UniRef50_B6BWW7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=beta proteobacterium KB13 RepID=B6BWW7_9PROT Length = 563 Score = 573 bits (1477), Expect = e-162, Method: Composition-based stats. Identities = 221/573 (38%), Positives = 344/573 (60%), Gaps = 16/573 (2%) Query: 5 IQLRRREVDETADLPA---ELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAV 61 ++L +++DE+ P++ ++ A+R + S+++++ ++ +L +L ++A Sbjct: 1 MKLINKKIDESIKQKLINTGRHPIVSQILAARNISSSKDVDYPIEQLLSPNKLLNCDEAA 60 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 + L +A ++ +I +VGD+DADGA+ +++++L R LG +D+L+P+RF++GYGLS E+ Sbjct: 61 DFLSDAIQKQKKITIVGDYDADGASGSSVAILGFRLLGIE-VDFLIPSRFKNGYGLSSEI 119 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 VD A+ + +I+TVDNGI+S G+ HA LGI VIVTDHHL + LP A+ IINPN + Sbjct: 120 VDMANTKETDIIITVDNGIASFEGISHANDLGIDVIVTDHHLQAENLPDAKFIINPNQKK 179 Query: 182 CNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLD 241 C+FPSK+L G GV FYL++A+R LRDQ +FD N+ PNL ++LDLVAL T+AD+V +D Sbjct: 180 CSFPSKNLCGAGVVFYLLIAIRKKLRDQNYFDNLNVDEPNLLQILDLVALATIADMVKMD 239 Query: 242 ANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMS 301 NNR+L G+ IR+ +C G+K L + N+ SDL F + P++NAAGR+DDMS Sbjct: 240 FNNRLLVHHGLRVIRSQQCNLGLKKLFMLTNKSHLTALTSDLSFVIAPKINAAGRMDDMS 299 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 +GVA L N EA A +L N RK+ E MQ EA + + + ++ Sbjct: 300 LGVACLTATNENEAHEYARQLIEFNFQRKKTETDMQEEAQAIMRGFNNNN----KTICLF 355 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPG 421 + +WHQGV+GILASR+KE F+RPVI FA G LKGS RSI+G H+RDA++ + P Sbjct: 356 NDKWHQGVIGILASRLKENFYRPVIIFAQDESGYLKGSARSIEGFHVRDAIDLVAKKNPE 415 Query: 422 MMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 +++ FGGHAMAAGL++++D+F F Q F E+ L P L + D + + + + Sbjct: 416 VIVTFGGHAMAAGLTIKKDRFDSFVQSFEEVAESILKPEDLSEIIEVDDSILQDNINVHI 475 Query: 482 AQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL 541 + WG F PLF F + Q+++ H K+ + + I FN Sbjct: 476 IDEINQLE-WGNGFQRPLFTDTFDCVDQKVIKGLHTKLNL--TKHNQTFESIFFN----- 527 Query: 542 WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + ++ V+ Y L+ N+F + + I I Sbjct: 528 YQESIPDRVKCLYTLETNKFNNTNKVTLNIKKI 560 >UniRef50_C7H6M6 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Ruminococcaceae RepID=C7H6M6_9FIRM Length = 713 Score = 572 bits (1476), Expect = e-162, Method: Composition-based stats. Identities = 184/558 (32%), Positives = 276/558 (49%), Gaps = 29/558 (5%) Query: 25 LLRRLYASRGVRSAQELERSVKG---MLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 LL + A+RG+ E + G + L+ ++KA + +A I+V GD+D Sbjct: 63 LLAGILAARGITDPAEALTLLSGEEELTDPMLLTDMDKACARILDAIDREETIVVFGDYD 122 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 DG T+TAL ++ +G +N+ ++P+R DGYGLS + H +G QLIVTVDNGIS Sbjct: 123 VDGVTATALLYQHLKGMG-ANVKCMLPSREGDGYGLSKNAIQSIHDKGCQLIVTVDNGIS 181 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLA 201 + E A SLG+ +IVTDHHLP DTLP A A+++P D P K L G GVAF L A Sbjct: 182 ALEEAEFAASLGVDLIVTDHHLPHDTLPKAVAVVDPRRADDTSPFKGLCGAGVAFKLCAA 241 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 261 L + L DL A+GTVADV+PL NR L G+ ++ R Sbjct: 242 L-----------DGCPPEEMLDYCGDLAAVGTVADVMPLTGENRTLVKAGLHLLQHS-DR 289 Query: 262 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 321 PG+ ALL+ + + A ++ +A+ PR+NAAGR+D + L+LC++ A LA++ Sbjct: 290 PGLLALLDEVGLGGKPVTAENVSYAIAPRINAAGRMDSAVTALQLVLCEDEERAAELAHK 349 Query: 322 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 381 L+ +N R+E E + A E + ++ +WH GV+GI+ASR+ E+ Sbjct: 350 LNEINAARQETEGEIAKAAQAQLEAEPAI--LEDRVILIWGRDWHPGVIGIVASRLVEKT 407 Query: 382 HRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDK 441 RPVI + G KGSGRS+QG ++ + + L +L+FGGHAMAAGLS+ E+ Sbjct: 408 GRPVIVVSIDEHGEGKGSGRSVQGFNLHACIASCEDL----LLRFGGHAMAAGLSVREEN 463 Query: 442 FKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD 501 ++R E P L+ + D + +T+E + L P+G P P+F Sbjct: 464 LPELRRRLNEWAAREC-PVLVTPPLECDLSIHLDRITVESVRRLDQLAPYGAENPAPVFL 522 Query: 502 GH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINE 560 + V E + G + + F + P V A L + Sbjct: 523 LEKAVVEGVYPVSEG-RHCRLRLRQGNACIYAVWFGMHPEQLPYATGDVVDAALSLSV-- 579 Query: 561 FRGNRSLQI--IIDNIWP 576 + R Q+ I + P Sbjct: 580 YEAARGAQLSGRILELHP 597 >UniRef50_B8HKK4 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Chroococcales RepID=B8HKK4_CYAP4 Length = 813 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 178/592 (30%), Positives = 293/592 (49%), Gaps = 36/592 (6%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQ-QLSG 56 + Q+ + + E L PLL ++ +RG+ + +++++ ++ + + + Sbjct: 23 RWQVAPVQSRLAEQIARMTGLDPLLAQVLINRGLETPEQVQQFLEPESLILPSPLTEFAD 82 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + +VE+L A I + GD+DADG TSTAL + A + ++Y +P+R ++GYG Sbjct: 83 LGLSVELLLQAIAAQKEIAICGDYDADGMTSTALLLRA-LQALGARVNYAIPSRMQEGYG 141 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ +V++ G QLI+TVDNGI++H + AR LG+ VIVTDHH LP A AI+N Sbjct: 142 LNERIVEEFAGSGVQLILTVDNGIAAHRPITRARELGLAVIVTDHHDLPPELPCANAILN 201 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P L + P LAGVGVA+ L ++L L + LL+L LGT+AD Sbjct: 202 PKLLPHSSPYAGLAGVGVAYILAVSLAQSL---------GRTEDLVTALLELFTLGTIAD 252 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVAN-----RDAQKLAASDLGFALGPRL 291 + PL NR +G++ + + GI+AL++V+ ++ Q +GF LGPR+ Sbjct: 253 LAPLTGVNRRWVKRGLALLPRSR-FAGIQALIQVSGGLTSKQENQAFKPEAIGFRLGPRI 311 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NA GR+ D + LL D+ A A + NQ R+++ + ++ EA+ E + Sbjct: 312 NAIGRIGDPQTVIDLLTTDDPMLAYAQAMVCEQTNQKRQQLCEEIEREAIAQLEAAQL-D 370 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 L + HP+WH GV+GI+ASR+ ER+ PV + G ++GS R I + A Sbjct: 371 LERERVLVLVHPDWHHGVIGIVASRLVERYGVPVFIGSYEEQGQIRGSARGIPEFDVFGA 430 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L+ L +LKFGGH A G SLE D+ + R + L P L+ V D Sbjct: 431 LQYCQDL----LLKFGGHRAAGGFSLEADQLPALRSRLRDFAHLQLQPEQLKPLVTVDVE 486 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGER--HLKVMVEPVGGGP 528 + +++T E+ + P G PEP+F +++Q+ +G+ HLK+++ Sbjct: 487 VHLSQITWELYHQIDRLHPCGIGNPEPVFWSAGVEVVEQKRIGKDQAHLKLVLAQTDLDS 546 Query: 529 ----LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 A+ + +AY L N + G L++ + + P Sbjct: 547 PQKIQWKATAWRWGRYYPL---PTHLDVAYHLQSNTWNGETKLELELIGVRP 595 >UniRef50_A8YVP8 Single-stranded-DNA-specific exonuclease n=6 Tax=Lactobacillus RepID=A8YVP8_LACH4 Length = 757 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 172/581 (29%), Positives = 294/581 (50%), Gaps = 38/581 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSG 56 MK Q + E+ +L P+ RL+A RG+ + ++L+ + + Sbjct: 1 MKWQQRTAE-ELAPDLVEKYQLSPISARLFALRGINTDEKLDFWFNATEENLTDPSLMHD 59 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV+ + A G +I + GD+DADG T+T + A+ LG +++ Y +P+RF+DGYG Sbjct: 60 MDKAVDRINQAIDNGEKITIYGDYDADGITATTIMTEALSILG-ADVHYFIPDRFKDGYG 118 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + + A G +LI+TVDNG++ VE+A+ G+ I+TDHH + P A AI++ Sbjct: 119 PNLDRYKDIVADGTKLIITVDNGVTGIEEVEYAKEHGVDTIITDHHTFQENKPDAYAIVH 178 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 N +P G GVA+ + L + ELLDL +GT+ D Sbjct: 179 CNYPGQEYPFDDYCGAGVAYTICRELMQ---------------DPVPELLDLAMIGTIGD 223 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V + I+ +G+ + + RPG++AL++ A + + +D+GF + PRLNA GR Sbjct: 224 MVKVTGEGHIIVKRGLDVLNQTE-RPGLRALIKNAGLTLETINETDVGFNIAPRLNAVGR 282 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L + ++ V LLL D+ EA+ +A++++ LN RKE+ + + L + + Sbjct: 283 LANANLAVELLLSDDDLEAQKIADQIEDLNNKRKELTTEVYDRCMELVRENSWQKQNT-- 340 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 L +Y P++H+GV+G++A++I E+ H+P I +G +KGSGRS G ++ DAL L Sbjct: 341 -LVLYDPDFHEGVLGLVANKIVEKLHKPTIVLTKNDEGEIKGSGRSFSGFNLFDALNPLK 399 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 ++ KFGGH A GLS+EEDK +++F +D L D L + Sbjct: 400 ES---LLTKFGGHDFACGLSMEEDKVNDLRKKFE--ADFHVDGGLETK--EYDMELPMHD 452 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGI 533 ++ + + GP+G P+P+F + +G + H+K+ G + + Sbjct: 453 LSPQTLAQINQVGPFGTGDPQPIFSISDPTITHFFKIGKDKNHVKLTANKKDGNLAI--V 510 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 FN L + ++ L +N +R SLQ I++ I Sbjct: 511 GFN-KDYLNNNLLPFISKIFVTLSLNTYRKQVSLQGIMEGI 550 >UniRef50_A7HJW8 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Thermotogaceae RepID=A7HJW8_FERNB Length = 989 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 171/585 (29%), Positives = 296/585 (50%), Gaps = 36/585 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 M+ +++ + + + + +L RG+++ ++ +R + + L Sbjct: 1 MRWELRQVDEHLVQELSERLGVNKFVAKLLVLRGIKTEEDAKRFLNPTRQTLRSPFLLKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +EKAVEIL A G ++I+ GD+D DG T TA+ + G N+DY +P R ++GYG Sbjct: 61 MEKAVEILLRARDNGEKVIIHGDYDVDGITGTAVLYTFLSENGW-NVDYYIPKRVDNGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + P+ V++ +G + I+TVD GI++ V+ A+ LG+ +++TDHH P +TLP A+AI+N Sbjct: 120 IQPQFVEEIVLKGFKTILTVDCGITAFEAVDKAKELGLNIVITDHHQPKETLPNADAIVN 179 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P D +P K AGVGVA+ L+ AL + NI ELLDLVALGTVAD Sbjct: 180 PKRPDDEYPFKEFAGVGVAYKLITALAEKM---------NIPPSVTDELLDLVALGTVAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V L NR + +G+ R+ + GI L++ ++ D+G+ + P+LNAAGR Sbjct: 231 MVELLDENRYIVREGLKRLNNT-AKLGIVRLIQKIGIAT--ISTRDIGYRIAPKLNAAGR 287 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 LD L++ + A L L N TR+ IE + EA+ + E + Sbjct: 288 LDSPDDAFKLIVTKDEASATELVEILLGYNVTRQGIEAKIYNEAVQMIES---NNLDSLP 344 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 + Y WH GV+GI+A+R+ +++PV+ + DG +GS RS+QG+++ + LER Sbjct: 345 IVVAYGYGWHLGVIGIVATRLVHLYNKPVMVISI-EDGVGRGSARSVQGVNIIELLERFR 403 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 ++ FGGH MA G SL+E+K + E + E + ++ + D +S E Sbjct: 404 DIFED----FGGHTMALGFSLKEEKIPELIKAIREKIRE--EDIKVEEVIAVDEKISVDE 457 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFDGHFR-LLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 + ++ + + P+G PEP+F + + ++ GE + + G ++G+ F Sbjct: 458 INEDLLKSIELLEPYGHGNPEPVFLIQNSPVERFKIFGETGYNIRLTLKGNSNSIEGVGF 517 Query: 536 NVDTALWPDNGVR----EVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + + G++ + + L G Q+ + ++ Sbjct: 518 GLKFSPNEMYGIQPQFIRMDVVGNLRT----GEAGPQLNVLDLKF 558 >UniRef50_C1A4A6 Single-stranded-DNA-specific exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A4A6_GEMAT Length = 599 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 198/581 (34%), Positives = 286/581 (49%), Gaps = 29/581 (4%) Query: 4 QIQLRRREVDETADL---PAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 + + E LP + RL +RG +R ++ + +L Sbjct: 20 RWVTAPQPAHEAVAQLCSALLLPESVCRLLVNRGYADVDAAKRFLRPRLEHIESPWRLHD 79 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 E+AV + A R I V GD+D DG +STAL +R LG ++ VPNR DGY Sbjct: 80 AERAVTRIAEAVRSQETIFVHGDYDVDGMSSTALLTRVLRDLGAHHVVPFVPNRLTDGYD 139 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L P V A A GA+L++T D G S+HA V + GI VIVTDHHLPG +P A A+ N Sbjct: 140 LGPAGVRAAQAAGARLVITCDCGTSAHAAVAELMTAGIDVIVTDHHLPGHGMPPAFAVCN 199 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P C K LA VGVA+ L LAL R LDLVAL T+AD Sbjct: 200 PRHPACQSADKDLAAVGVAYKLALALCEVFAVSPNIAHRQ---------LDLVALATIAD 250 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 V PL NR+ G+ + PG++AL+ + DA+ L A +GF L PRLNAAGR Sbjct: 251 VAPLRGENRVFVRYGLKLLAETT-HPGLRALMRSSGLDAKPLTAGRVGFVLAPRLNAAGR 309 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + D +G+ LLL + EA V+A EL+ LN+ R+E+++ + +A+ E Sbjct: 310 IADARLGLQLLLAEREDEANVIARELEELNRARQELDRTVLDDAMRQVESPAMRDQV--- 366 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 G + WH GV+GI+ASRI E RP + A DG KGSGRSI + L Sbjct: 367 GFVLSREGWHAGVIGIVASRIVEHTARPAVLVA-VEDGVGKGSGRSISAFDLHAGLGACA 425 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 L+ ++GGH AAGL+++ + F +RF + L L E+ D +S Sbjct: 426 DLFQ----RYGGHRAAAGLTMDAAQLPAFAERFDAVARAQLSADDLVPELRVDLDVSIHA 481 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQ--RLVGERHLKVMVEPVGGGPLLDGIA 534 + E+ +L+R P+G P P F L R VG L++ V+ GG L+GI Sbjct: 482 VGEELEKLVRHFEPFGIGNPSPTFRADGVRLAAPTRRVGTDGLRISVDTTGG--TLEGIG 539 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + + + + +A++L+ +E+RG LQ+ + ++ Sbjct: 540 WGLAARMPRLDVSQAYDMAFRLERDEYRGVSRLQLKLTDVR 580 >UniRef50_C0QDK3 RecJ n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDK3_DESAH Length = 572 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 189/582 (32%), Positives = 296/582 (50%), Gaps = 24/582 (4%) Query: 1 MKQQIQLRRREVDET--ADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 M+ + + ++ + ++ L A+RGV++ + + + L Sbjct: 3 METEWKEKKSNSATVAGLEKALGCHRIVATLLANRGVKTPEAALAFLTPTMETLTSPFSL 62 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +++AVE + A RI++ GDFDADG T+TA+ + + I + +P+R ++G Sbjct: 63 KDMDRAVERIILAIENNERILIFGDFDADGITATAVLNDFLTHVNGE-ISWYIPHRSKEG 121 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YGL E + A + LIVTVD G S V+ AR I VIVTDHH D P A AI Sbjct: 122 YGLKVEHIAMATEQQIDLIVTVDCGSDSFEAVDLARLEDIDVIVTDHHEVPDPAPRALAI 181 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NP + C+ LAGVGVAFYL++ALR +R +G + PNL DLVALGT+ Sbjct: 182 VNPKQKCCHSGLDHLAGVGVAFYLVIALRMEMRKRGMWQ--RFTEPNLLASCDLVALGTI 239 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+VPL A NR+LT G+ +R GK RPG+ AL +VA D + + D+ F + PR+NAA Sbjct: 240 ADMVPLTAENRVLTIAGIEVMRRGK-RPGLSALFDVARIDVALIDSDDIAFRIAPRINAA 298 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ + + LL + A A+ LD LN+ R++ EQ + + + + Sbjct: 299 GRMAHARICIDLLCSRDPRGAEQKADLLDQLNKKRQQTEQSIVADIERRISRQ--NGAPC 356 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 L M+ WH GV+GI+AS+I ++ PV+ + + GS RSI +++ AL + Sbjct: 357 KDALVMWDSSWHPGVLGIVASKISRKYVCPVVLIS-TANSPATGSCRSINNINIHSALGQ 415 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + +FGGHAMAAGL+++E F F + + + + D L Sbjct: 416 CSD----FLERFGGHAMAAGLTIQEKNMAAFSHHFENTIRSIVHGEPRKRILELDCALEI 471 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGG--GPLLD 531 +T E+ + + P+G PEPLF ++ ++G RH K+ + GP + Sbjct: 472 DTVTKELIEAIDSLRPFGMGNPEPLFYCKDIKVTHSTIIGMRHRKMELAKQTNASGPCIS 531 Query: 532 GIAFNVDTALWPDNGVREVQ-LAYKLDINEFRGNRSLQIIID 572 + FN+D D + +A+++ +N F G S QIII+ Sbjct: 532 AVHFNIDDL---DCLPDHFEQIAFRIRMNRFNGRFSPQIIIE 570 >UniRef50_Q2YT94 Single-strand DNA-specific exonuclease n=60 Tax=Staphylococcus RepID=Q2YT94_STAAB Length = 757 Score = 569 bits (1468), Expect = e-161, Method: Composition-based stats. Identities = 177/582 (30%), Positives = 290/582 (49%), Gaps = 38/582 (6%) Query: 2 KQQIQLRRRE--VDETADLPAELPPLLRRLYASRGVRSAQELERSVKG---MLPWQQLSG 56 K + +L + + + +L P+++++ S+ + Q +E + QLS Sbjct: 5 KYKWKLIKPTEYISDELTSKLKLTPIVKKILESKSIIDEQAIESIISDTDINHDALQLSD 64 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + K +E + A +I+V GD+DADG TST + V ++ LG + + + +PNRF +GYG Sbjct: 65 MTKTIERIKRAIANDEKILVYGDYDADGVTSTTILVTTLQLLG-AQVGWHIPNRFTEGYG 123 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + AH G LI+TVDNGI H ++ + LG+ VIVTDHH G TLP A AI++ Sbjct: 124 PNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLGVDVIVTDHHEIGSTLPEAYAIVH 183 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P N+P + L G GVA+ L AL + LVA+GT+AD Sbjct: 184 PMHPSFNYPFQQLCGAGVAYKLAQALIENVP---------------DYFKALVAIGTIAD 228 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V L NR L QG+ + +C +KALL+ A + + +GF +GPRLNA GR Sbjct: 229 LVSLTDENRSLVKQGLKVLND-QCPTSVKALLKEAGYN-DNIDEETIGFIIGPRLNAVGR 286 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 LDD S+ LL+ D+ EA LA +++ N+ RK+I + EA+ + E ++ D Sbjct: 287 LDDASLACELLMTDDEEEAAFLAEQVEHFNRERKDIVATITEEAMAMAETKVKNGDLF-- 344 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERL 415 L + WH+GV+GI+AS+I E F P + KGS RSI + M + L Sbjct: 345 -LLLAKENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSMFEILSA- 402 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + ++ KFGGH MAAG++++ + + + + + E + L D L+ Sbjct: 403 ---HQELIAKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKPVDVLLTEN 459 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDG 532 ++T++ + + P+G F P+F + + +G + HLK+ + G + Sbjct: 460 DITIKNIRDMNRLRPFGTDFSRPIFEMDDLSVSSVKAIGQQKNHLKLTL----GESNIAA 515 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + + + + + + INE+ GN+S Q+II +I Sbjct: 516 LFWQNGHLEPELQDEQPINILGSVQINEWNGNQSPQLIIQDI 557 >UniRef50_A5WDK1 Exonuclease RecJ n=3 Tax=Psychrobacter RepID=A5WDK1_PSYWF Length = 611 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 241/586 (41%), Positives = 363/586 (61%), Gaps = 44/586 (7%) Query: 24 PLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDAD 83 P L RL+ +RG++S Q+L+ + +LP Q LS V++AV ++ A RI++VGDFD D Sbjct: 28 PTLTRLFLARGIQSDQDLDYGLSALLPAQGLSDVDEAVTLMDEAIEAQRRILIVGDFDCD 87 Query: 84 GATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR-GAQLIVTVDNGISS 142 GATSTAL + + +G + +D++VP+RF+ GYGL+PE+V + +I+TVDNGISS Sbjct: 88 GATSTALMMRILSQMG-AVVDFVVPDRFKYGYGLTPEIVQLGIEQYQPDMIITVDNGISS 146 Query: 143 HAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLAL 202 H GV+ A + GI VI+TDHHL + P A A++NPN C+F SK+L GVGVAFYL+ L Sbjct: 147 HEGVDKAIANGIKVIITDHHLTTKSKPNAHAVVNPNQLGCSFESKALVGVGVAFYLLGRL 206 Query: 203 RTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRP 262 + R+ + ++ LDLVALGT+ADV LD NNRIL G++ IRAG+C Sbjct: 207 AKYRRE------AGRSTAQVSRYLDLVALGTIADVGVLDHNNRILVNHGLAAIRAGRCSL 260 Query: 263 GIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 322 GI ALLE+A RD QK++ D GF +GPR+NAAGR+D+M +G+ L+ D++ +A+ LA EL Sbjct: 261 GILALLELAGRDYQKMSVQDFGFVIGPRINAAGRMDNMRIGIECLMADDMSDAKRLAFEL 320 Query: 323 DALNQTRKEIEQGMQIEALTLCEKLERSRDT----------------------------L 354 D LN+ R+ +E M+ +A + +L+ + D Sbjct: 321 DKLNKERRYVEGEMREQADEILRQLQPNSDRSQAQTTDEQSDDSDDSLKQQAESFTDKAQ 380 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD------GTLKGSGRSIQGLHM 408 P L +Y WHQGV+GI+A R+KE +RP I FAPA D +KGS RSI G+H+ Sbjct: 381 PRSLILYQDNWHQGVIGIVAGRLKESHYRPAIVFAPADDTQLDGQDAIKGSARSIPGIHI 440 Query: 409 RDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS 468 RDA+ER+ +P ++ FGGHAMAAGL+L+ FK F + F EL + ++ S+ + + + Sbjct: 441 RDAIERIAESHPELITHFGGHAMAAGLTLKRKDFKAFAEAF-ELQMQSVEASVFEEQQFT 499 Query: 469 DGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGP 528 DG L + +++ + L WG F P FDG F ++Q R++ ++HLK+ ++ G Sbjct: 500 DGQLLAEDFSLQFVEALTQNHIWGHGFVPPQFDGVFDVVQARILKDKHLKLSLKYPGVMY 559 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +D I FN D W D ++V + ++L INE++GN+++Q+++ ++ Sbjct: 560 PIDAIWFNYDPKKW-DYRAQQVHVLFELSINEWQGNQNIQLMVKDV 604 >UniRef50_Q1IIX8 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIX8_ACIBL Length = 579 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 180/590 (30%), Positives = 291/590 (49%), Gaps = 33/590 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 M+ + V A + PL+ L A+RG++ + E + + ++ G Sbjct: 1 MRWTQRPFDFSVASRLSAEANISPLVAVLLAARGIKYSDEAWMFLNPSLDALHSPYEMLG 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++ AVE L A + ++++ GD+D DG T+T + A+ G ++ VP+R +GYG Sbjct: 61 MDAAVERLMAAIAKKEQVLIYGDYDVDGTTATVILKTAIEICG-GRAEFHVPHRLLEGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG-DTLPAAEAII 175 + EV+++A A G +LI++VD GI + A E A LG+ +IVTDHHLPG D +P A A++ Sbjct: 120 MRDEVIEKAAADGIRLIISVDTGIRAFAAAETASRLGLDLIVTDHHLPGADGVPKALAVL 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NPN C++P K L G GVAF + AL L + A+ T+A Sbjct: 180 NPNQTGCDYPCKHLCGAGVAFKVAQALLEKSDRARLIPS----------FLKMAAIATIA 229 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D VPL NR+ G+ +R G+K LL + D + L+ D+ F + PRLNAAG Sbjct: 230 DAVPLTGENRVFVSLGLEGLRK-PVNAGLKELLALCRIDGRTLSTQDVAFRIAPRLNAAG 288 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+D V L + A+ +A L+ LN R+E E + +D Sbjct: 289 RMDVARDVVELFTTRDAKHAKDVAQHLNKLNGDRQEEEARIMAAIEKQLADDASFKDR-- 346 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + EWH+GV+GI ASR+ +R HRP + A +G GSGRSI H+ +ALE Sbjct: 347 YSFVLDGAEWHRGVIGICASRVVDRVHRPALVIAR-HEGEAHGSGRSIPSFHLLNALESC 405 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L+ ++GGHA A G +L ED+ +++ + L P+ E+V D L + Sbjct: 406 ADLFS----RYGGHAHAVGFALPEDRLPQLREKLEAYARQHLKPADFVPEMVYDTELPLS 461 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLL--QQRLVGERHLKVMVEPVGGG---PLL 530 +++ ++ +L+ P+G P+P+F L R + E+H+K+ + P G Sbjct: 462 DVSEKLYLMLQKLEPFGMSNPQPVFVSRGARLAGPARTLKEKHVKMRLAPQSNGGFQRSF 521 Query: 531 DGIAFNVDTALW---PDNGVREVQLAYKLDINEFRGNRSLQIIIDNI-WP 576 + +A+ + L P N + +A+ +D N+ LQ+I+ + P Sbjct: 522 EALAWRKNEKLQAEPPLNMGDLLDVAFTIDHNDHPDFGGLQLILCDWAKP 571 >UniRef50_Q2SXD4 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Burkholderia thailandensis RepID=Q2SXD4_BURTA Length = 564 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 266/575 (46%), Positives = 359/575 (62%), Gaps = 15/575 (2%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA 60 M + + A L P+L RLYA+RG+ S ++E ++ ++P QL G A Sbjct: 1 MTRIVTRPAVPAALDALARHGLHPVLARLYAARGIASPADVETALSRLVPPAQLKGCADA 60 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 +L +A G +++VV D+D DGAT+ A++V +R G + IDYLVPNRFE GYGL+PE Sbjct: 61 AALLADALEAGRKMLVVADYDCDGATACAVAVRGLRMFG-AKIDYLVPNRFEYGYGLTPE 119 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 +V+ A AR L++TVDNGI+S GV A + GI V+VTDHHLPGDTLPAA AI+NPN Sbjct: 120 IVELAAARKPDLLITVDNGIASVDGVAAANARGIDVLVTDHHLPGDTLPAARAIVNPNQP 179 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 C FPSK +AGVGV FY++LALR LR +G F + P L LLDLVALGTVADVV L Sbjct: 180 GCAFPSKHIAGVGVMFYVLLALRAELRARGAFGDA-RPEPRLDGLLDLVALGTVADVVRL 238 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 D NNR+L QG+ RIR G+ +PG+ AL A RDA+ + DLGF LGPRLNAAGRL DM Sbjct: 239 DGNNRVLVAQGLQRIRNGRMQPGVAALFRAAARDARSASGFDLGFGLGPRLNAAGRLSDM 298 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 S+G+ L D++G A LA +LDA+N+ R+EIE GMQ +AL ++ + + + Sbjct: 299 SLGIECLTTDDVGRAWELAQQLDAMNRERREIEAGMQQQALADLASVDPAE---AATITL 355 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAP-AGDGT-LKGSGRSIQGLHMRDALERLDTL 418 ++PEWHQGV+GI+A R+KERFHRP FA G G +KGSGRSI G H+RDA++ + Sbjct: 356 FNPEWHQGVIGIVAGRLKERFHRPAFTFAHADGSGARVKGSGRSIPGFHLRDAIDLISKR 415 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 P +++ FGGHAMAAG++L+ F F + EWL L + +DG L A T Sbjct: 416 EPDLIVTFGGHAMAAGVTLDTGNVPRFAAAFEAVAREWLSDDALARVIETDGDLEDAYFT 475 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD 538 +V +LL A WGQ FP PLF G F + Q LV ++HLK+ + G + I FN Sbjct: 476 PQVVELLD-AAVWGQGFPAPLFSGEFDVASQALVKDKHLKLQLM--RGRQRFNAIWFNHA 532 Query: 539 TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 LA++L + + G +Q+I+++ Sbjct: 533 E-----PLPARATLAFRLASDTWNGTTRVQLIVEH 562 >UniRef50_C4GBT7 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GBT7_9FIRM Length = 590 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 185/607 (30%), Positives = 296/607 (48%), Gaps = 51/607 (8%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQE---LERSVKGMLPWQQLSGV 57 M + + ++ + + + R+ +RGV L S+ + L V Sbjct: 1 MSKWLLTNKKADFKALARANGIDQVTARVMVNRGVAEEDFDAYLHPSLDQIRNPHDLKDV 60 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 ++A ++L A G +I ++GD+D DG ST + A+ + +++DY++P R EDGYGL Sbjct: 61 DRAADLLSEAIDAGKKIRIIGDYDIDGIQSTYILHQALLTCQ-ADVDYVLPKRIEDGYGL 119 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG---------DTL 168 + +V+ AH G LI+T DNGI++ + A+ LG+ VIVTDHH D L Sbjct: 120 NSHLVEDAHESGVSLIITCDNGIAAKEAIARAKDLGMMVIVTDHHEVPFAMADGKRLDRL 179 Query: 169 PAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDL 228 P A+AI+NP DC +P K + G VA+ L+ L +++R +++ + L+ Sbjct: 180 PPADAIVNPKQADCPYPFKEICGAVVAWKLVFVL---------YEKRGVSVTLAMDFLEN 230 Query: 229 VALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALG 288 A TV DV+PL NR + G+ R+R PG+ AL+ V D L+A +GF LG Sbjct: 231 AAFATVGDVMPLVDENRTIVSLGLERLRKT-SNPGMAALMRVREIDPDHLSAYHIGFILG 289 Query: 289 PRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLE 348 P LNAAGRL+ LL +A VLA +L ALN+TRK + +A T ++ + Sbjct: 290 PCLNAAGRLETAEKSTRLLEEKEPEKAWVLAEDLAALNETRKAMTARGLEDAFTQIKEGD 349 Query: 349 RSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAP-AGDGTLKGSGRSIQGLH 407 ++D L +Y P+ H+ + G++A ++KE RP + +G +KGSGRSI Sbjct: 350 YAKD---PVLVIYLPKLHESIAGLVAGKVKESLWRPCFILTDASAEGLVKGSGRSIPPYS 406 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 M + + R L M++FGGH MAAGLSL DK ++ L L ++ Sbjct: 407 MFEEMNRCKDL----MVQFGGHPMAAGLSLRRDKIDSLRRALNANC--TLTEDDLLPKIH 460 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFR-LLQQRLVGERHLKVMVEPVGG 526 D P+ +T+ + + L+ P+G P+PLF + R +G + G Sbjct: 461 IDVPMPLHYITISLVEELKRLEPFGNGNPKPLFAVRNVLVRSLRTMGREGQFLKFSLREG 520 Query: 527 GPLLDGIAFNVDTALW---PDNGVR--------------EVQLAYKLDINEFRGNRSLQI 569 ++G+ F A + + V++ Y+ IN +RG +SLQ+ Sbjct: 521 SSEVEGVYFGDARAFATAVEEAYGQGSWEEFCHGFRRDLAVRMVYEPQINSYRGRKSLQL 580 Query: 570 IIDNIWP 576 +I I P Sbjct: 581 VIREIEP 587 >UniRef50_Q5HNR5 Single-stranded-DNA-specific exonuclease RecJ n=6 Tax=Staphylococcus RepID=Q5HNR5_STAEQ Length = 757 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 178/582 (30%), Positives = 287/582 (49%), Gaps = 38/582 (6%) Query: 2 KQQIQLRRRE--VDETADLPAELPPLLRRLYASRGVRSAQELERSV---KGMLPWQQLSG 56 K + + + E++ +L P+++++ S+ + QE++ + LS Sbjct: 5 KYNWDITQPNTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFEGTNISHDYMLLSD 64 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KA++ + A + RI+V GD+DADG TST + V +R LG + + + +PNRF +GYG Sbjct: 65 MQKAIDRIKLAIDQNERILVYGDYDADGVTSTTILVSTLRLLG-AQVGWYIPNRFTEGYG 123 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + A+ G LI+TVDNGI H + + LG+ VIVTDHH G+TLP A AI++ Sbjct: 124 PNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAFAIVH 183 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P + +P K L G GVA+ L L + L A+GT+AD Sbjct: 184 PMHPNFEYPFKYLCGAGVAYKLAQGLIEHPPQH---------------FIALAAIGTIAD 228 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V L NR + QG+ + IKA+L A + ++ +GF +GPRLNA GR Sbjct: 229 LVSLTDENRYIVKQGLKILN-NHTPSSIKAILNQAGFN-DEITEETIGFIIGPRLNAVGR 286 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L+D S+ LLL D EA LA +++ N RK+I + EAL L E+ + Sbjct: 287 LEDASLAAELLLSDEFEEAEFLAEQVEHFNHERKDIVSKITDEALLLAEEQIKQGHLF-- 344 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERL 415 L + WH+GV+GI+AS+I E + P + + KGS RSI+ + M D L Sbjct: 345 -LLLAKEGWHEGVLGIVASKIVETYALPTLILNIDENQNHAKGSARSIEQVSMFDILND- 402 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + ++ KFGGH MAAG+++ D + + + E + L+ + D L Sbjct: 403 ---HQQLIDKFGGHHMAAGMTMSIDNIEHLHKELDMWMKELTVTTSLEPSIKVDAQLEEK 459 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGE--RHLKVMVEPVGGGPLLDG 532 E+ ++ + + P+G F PLF + + +G+ +HLK+ + G L Sbjct: 460 EINIKNIKDIFQLRPFGTDFNSPLFMVRDLIVKSTKGIGQDNKHLKLTL----GHSGLTA 515 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + +N + + + L INE+ GN++ Q II +I Sbjct: 516 LFWNHGHLASELEPGQPIHIIGTLQINEWNGNQTPQFIIKDI 557 >UniRef50_Q1LTU5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LTU5_BAUCH Length = 575 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 292/573 (50%), Positives = 408/573 (71%), Gaps = 4/573 (0%) Query: 5 IQLRRREVDETADL-PAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEI 63 +QLRRR + + + L +P LL+R+Y RG+++ +ELE + Q +G+++A + Sbjct: 3 VQLRRRAIGDISILDEINIPILLKRIYIQRGIKNPRELELKTCYLFTNAQFNGIQQAAIL 62 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 L A R+ I+VVGDFD DGATSTAL +LA++ +G I++L+ NRF+D YGL+ VV+ Sbjct: 63 LTKALRDKLSIMVVGDFDVDGATSTALVILALKQMGVEKINFLILNRFKDSYGLNTRVVE 122 Query: 124 QAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 + + GAQ+I+TVDNG+SSH + A + GIPV+V DHHLPG TLP A +I+NPNL++CN Sbjct: 123 KVASSGAQIILTVDNGVSSHTAINLAVAKGIPVLVIDHHLPGQTLPNAVSIVNPNLKNCN 182 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 F SK+LA VGVAFYLMLALR L GWFD+ IA+P LA+L DLVALGTVAD+VPLD N Sbjct: 183 FQSKNLASVGVAFYLMLALRMELCKSGWFDKNKIAVPKLAKLFDLVALGTVADMVPLDMN 242 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NRIL QG++ IR G CRPGI+AL+E++N + K+ ASDLGF + PRLNAAGRL DMS+ Sbjct: 243 NRILVHQGINLIRTGCCRPGIRALVEISNINLTKICASDLGFYISPRLNAAGRLQDMSLS 302 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 V LLL DN+ AR++A +LD LN+ R+ IEQ M I+AL LC+++E +++ +P GL +YH Sbjct: 303 VELLLADNLSTARIIAAKLDRLNKERRLIEQKMFIQALNLCKQIENTKNGIPSGLLLYHQ 362 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMM 423 WHQGV+GI+AS+IKE F+RPVI APA + LKGS RS+ +H+ + L+ LD LYP MM Sbjct: 363 NWHQGVIGIIASQIKEFFYRPVIILAPADNFLLKGSCRSVPSVHIYNLLQILDQLYPNMM 422 Query: 424 LKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483 L FGGHAMAAGL++E+ K LF+ F L + + PS+L + SDG L E+++ A+ Sbjct: 423 LNFGGHAMAAGLTIEQSKLSLFRDSFYSLANQLIKPSMLNKIIWSDGELVGKEISISTAK 482 Query: 484 LLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWP 543 +LR+ GPWG F +PLFDG F +L + L+ + HLK+ ++ + G ++DGI FN++ + Sbjct: 483 ILREGGPWGVEFTDPLFDGIFCILNKMLIKKVHLKIKLQDISNGLIIDGIIFNINKIILL 542 Query: 544 DNGVREV-QLAYKLDINEFRGNRSLQIIIDNIW 575 + + ++AYKL+IN N LQ++I IW Sbjct: 543 SIKTKTLYRIAYKLNINY--SNHQLQLLIQYIW 573 >UniRef50_B9XN50 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=bacterium Ellin514 RepID=B9XN50_9BACT Length = 577 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 191/592 (32%), Positives = 297/592 (50%), Gaps = 31/592 (5%) Query: 1 MKQQIQLR--RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 MK + L + + + ++ PLL + +RG+ +A+ L ++ + L Sbjct: 1 MKFRWSLSPSQPLLIKQLASVLKVSPLLAQCLVNRGMSNAEALATFLQPRLKELADPFLL 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 + AVE L+ A + ++V GD+D DG TSTAL ++R+LG + +++ +P+R E+G Sbjct: 61 PNMAAAVERLFQARQRKESLVVFGDYDVDGVTSTALLAESLRALGWT-VNFYLPHRMEEG 119 Query: 115 YGLSPEVVDQ-AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 YGLS E V+ L++ VD G ++ +++ R GI V+V DHH PAA A Sbjct: 120 YGLSQEGVENCLRKFPTTLLLAVDCGSTAVTTIDYLRQKGIDVLVLDHHQVSSPAPAAIA 179 Query: 174 IINPNL-----RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDL 228 ++NP L D + L VG+AF L+ AL R+ G + +L LLDL Sbjct: 180 LVNPQLGPTREEDGKSSFRELCSVGLAFKLVHALVKRGREVGLAEA---EKYDLRPLLDL 236 Query: 229 VALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALG 288 VALGT+AD+VPL NRIL + G+ R+ + RPG+ AL +VA + A ++GF L Sbjct: 237 VALGTIADLVPLTGENRILVYMGLQRL-SSTVRPGLVALKKVAQV-TASMGAYEVGFQLA 294 Query: 289 PRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLE 348 PRLNAAGRL++ + + LL+ ++ A +A LD N+ R++IE+G+ E + Sbjct: 295 PRLNAAGRLENAAEALDLLMAPDMQTAVPIAESLDLRNRERQKIEKGIVEEVIGSVRA-- 352 Query: 349 RSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHM 408 + + WH GVVGI+ASR+ ++F+RP I GD +GSGRSI G + Sbjct: 353 KFNPERDYVIVEGQLLWHVGVVGIVASRVLQQFYRPTIIVGGEGD-EWRGSGRSIAGFDL 411 Query: 409 RDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS 468 AL D L +++ GGHAMAAGL++E K L + R EL + LQ + Sbjct: 412 AAALRDCDDL----LVRHGGHAMAAGLTIEAGKLDLLRVRMNELAQRLIKREELQPLLRL 467 Query: 469 DGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQR---LVGERHLKVMVEPVG 525 D ++ E+ + L P GQ P F + Q R +G V + Sbjct: 468 DAEVTLKEINFDSLFELDLLKPTGQGNPVVQFMVRN-VTQARPLQRMGAEKQHVKLWLTD 526 Query: 526 GGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 G + + + V LA+ INEF G R++Q+ + + P+ Sbjct: 527 GTATHEAVWWGAGKDTAL--PVGRFDLAFAPQINEFAGRRTVQLKVLDWKPM 576 >UniRef50_C6X239 Single-stranded-DNA-specific exonuclease recJ n=2 Tax=Flavobacteriaceae RepID=C6X239_FLAB3 Length = 570 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 164/589 (27%), Positives = 297/589 (50%), Gaps = 32/589 (5%) Query: 1 MKQQIQLRRREVDET---ADLPAELPPLLRRLYASRGVRS----AQELERSVKGMLPWQQ 53 M Q+ R +ET ++ RG+ + + + ++ + Sbjct: 1 MSQKWIYRPEPDEETVDAISSSLGFGTFESKILVMRGIDNYQKAREFFKPNLNDIHNPFL 60 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSL-GCSNIDYLVPNRFE 112 + ++ AV+ + A G +I+V GD+D DG T+ AL L + + ++Y +P+R Sbjct: 61 MKDMQIAVDRVATAIENGEKIMVYGDYDVDGTTAVALMYLYLSKIVDKKYLEYYIPDRNI 120 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 +GYG+S E +D A G LI+ +D GI + V++A+SL I I+ DHHLPGD +P A Sbjct: 121 EGYGISIEGIDHAKNNGFSLIIALDCGIKAIDKVDYAKSLAIDFIICDHHLPGDEIPDAV 180 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A+++P +DC +P K L+G GV F L L + + I L EL DL+A+ Sbjct: 181 AVLDPKRKDCRYPFKELSGCGVGFKLCQGLNSIYK---------IPEAELFELTDLLAIS 231 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 292 AD+V + NR+L QG+ +R + G++ L+ +++ ++ F + P++N Sbjct: 232 IAADIVSMTGENRVLAKQGLKVLRKSR-NLGLRMLIPEEKLATFEIS--NIVFEIAPKIN 288 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 AAGR+ V L++ DN+ +A + N++ LN +R+E++ EAL E+ ++ ++ Sbjct: 289 AAGRISQGKAAVELMVSDNLKQAHQIVNDIITLNDSRREMDMSSTTEALLQVEETQQVQN 348 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 +Y W++GV+GI+ASR+ E + +P + F +G + S RS+ + DAL Sbjct: 349 YTT---VVYGSGWNKGVIGIVASRLTETYFKPTLVFTDGNNGEMVASARSVADFDVHDAL 405 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 E LKFGGH AAGLS+E+DKF F+++F ++V+E + + ++ D + Sbjct: 406 ENCSE----FFLKFGGHPAAAGLSMEKDKFDKFREKFEKVVSEKIQQHQKEPSLLIDSDV 461 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ--QRLVGER--HLKVMVEPVGGGP 528 P ++ + R P+G +P+ + + + +G+ HLK ++ G Sbjct: 462 IPDDLNKDFFSFHRKLAPFGPHNMKPILAMKNQKISGYVKTMGKDNCHLKFYIKQESTGR 521 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 ++ + F + D R +A+ + N ++GN + + I ++ I Sbjct: 522 NIECVGFKLG-KFVEDFRNRPFDIAFTAEENHWKGNVTYYLNIRDVKFI 569 >UniRef50_A5FQT9 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Dehalococcoides RepID=A5FQT9_DEHSB Length = 566 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 170/577 (29%), Positives = 274/577 (47%), Gaps = 29/577 (5%) Query: 5 IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM----LPWQQLSGVEKA 60 +L + + E PPL+ RL +RG+ + + + + +E A Sbjct: 9 WKL-KPALPEETGQNFPYPPLISRLLYNRGITTIEAADLFLSPDKRLNHDPFLFPDMEMA 67 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 V +Y A G +I+V GDFDADG T+TA+ + LG N+ +P+R +GYGL Sbjct: 68 VSRIYKALLAGEKIVVYGDFDADGLTATAVLTTGIARLG-GNVTPYIPHRITEGYGLKIS 126 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 +++ A G L+++ D GI++ ++ A +G+ VIVTDHH P D LP A AIINP + Sbjct: 127 ALEKHRAEGVSLVISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAYAIINPKMP 186 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 +P K LAGVGVA+ L+ AL L +LLDLVA+GTVAD+VP+ Sbjct: 187 CSTYPCKELAGVGVAYKLIQALYRNLGR----------EDEAKDLLDLVAIGTVADIVPI 236 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 NR L +G+ + A RPG+ + +++ ++ + + + PRLNAAGRL+ Sbjct: 237 LDENRYLVKEGVKLLNAEP-RPGLIEMAQLSRLHLGEIETESISWIMAPRLNAAGRLEHA 295 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 G LL I +++ LA L+ N R+++ +A + + P L Sbjct: 296 MAGYKLLTATTISDSQELALWLENKNTERQQLTVRFVEKARAMLDTQ-----FPPALLIF 350 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 E QG+ G++A R+ + ++RP I D + GS RSI ++ AL L+ Sbjct: 351 SDAECPQGISGLVAGRLSDEYYRPSIVIKTNAD-SATGSCRSIPDFNIIQALNHFAHLFS 409 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 FGGHA AAG +L + F Q E L L+ + D + + Sbjct: 410 ----HFGGHAQAAGFTLPIENLDAFVQGISAYAEEILSVMELKPFIDIDIDTDLSLLCPA 465 Query: 481 VAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT 539 + L P+G+ P+P+F + R +G + + + G DG+AF Sbjct: 466 TLRELERLAPFGEANPKPVFLSRGLNITDYRSMGSNNEHLKLRIKHKGRFWDGVAFRQAK 525 Query: 540 ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 L V + Y L+++++ G +L++ I ++ P Sbjct: 526 ELSSF-LQSPVDIVYNLELDKWCGTDTLRLKIIDMAP 561 >UniRef50_C0WCD6 Exonuclease recJ n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCD6_9FIRM Length = 778 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 174/572 (30%), Positives = 284/572 (49%), Gaps = 26/572 (4%) Query: 9 RREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVEKAVEIL 64 ++ ET L P+L + R + + + + + L +E+AV + Sbjct: 14 DPDLLET-GKALGLSPVLMGILKRRNLTDPEAIRTFLDGSPEPFHDPYGLLHMERAVTRI 72 Query: 65 YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124 A + +I + GD+D DG ++++L L + + +P R +GYGL+ E +++ Sbjct: 73 CEALSKEEKITIYGDYDVDGTSASSLFFLFLTKNLGAKAAVYIPRRDTEGYGLNLEALEK 132 Query: 125 AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNF 184 +A G+ L++TVD GIS ++ A + G+ VI+TDHHL LP A ++NPN ++ Sbjct: 133 IYAGGSTLVITVDTGISGADVIKKAPT-GLDVIITDHHLAPQELPPAYTVVNPNQPGDSY 191 Query: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANN 244 P K + G GVAF L AL + +L++L A+ TVADVVPL N Sbjct: 192 PEKGICGCGVAFKLCQALWQHFHPESAL---------WTDLIELAAVATVADVVPLVGEN 242 Query: 245 RILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGV 304 R + +G+ +I G++AL++ A R+ + + +GF +GPR+NAAGRLDD + V Sbjct: 243 REIVRRGLKKIANTSL-VGLRALIQSATREGSPITSDTIGFGIGPRINAAGRLDDAMLAV 301 Query: 305 ALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE 364 LL+ + EA+ L+ EL+ LN R+EI Q + EA + S G+ + Sbjct: 302 KLLITSDSEEAKTLSRELNDLNAKRQEISQRIFEEAEAML---TASGKVPTWGIVLAKEG 358 Query: 365 WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMML 424 WH GV+GI+ASR+ E++H P I + DG KGS RSI +H+ ALE ++ Sbjct: 359 WHPGVIGIVASRLTEKYHEPTILMSI-KDGIAKGSCRSIPPVHLYHALEACR----LALI 413 Query: 425 KFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE-MTMEVAQ 483 +FGGHA AAGL++E DK + F E V L + + EV D + E +T ++ Sbjct: 414 QFGGHAQAAGLTMEADKVDELRHLFTETVKTALHGEIYEPEVEPDYFIPEGEAVTEKIVH 473 Query: 484 LLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALW 542 L P+GQ P P+ + R +G+ + ++ GG G+ + Sbjct: 474 ELERLQPFGQNNPAPILGFERAVITGVRTMGKDGSHLRLDLSSGGYGYKGLLWQEGPRSH 533 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 E +A+ +N FRG ++ + + + Sbjct: 534 YFYEGEEAAVAFVPRLNTFRGVTTVDLEVKAV 565 >UniRef50_C4G696 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G696_ABIDE Length = 580 Score = 566 bits (1459), Expect = e-160, Method: Composition-based stats. Identities = 174/596 (29%), Positives = 301/596 (50%), Gaps = 37/596 (6%) Query: 1 MKQQIQLRR-REVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 M + +R R + + + R+ +RG+ + ++++ + + + + Sbjct: 1 MTGRWYMRTIRGDFDGIAARFGISKIAARVLVNRGMSNDEDIDEYLNAEEKELARPELMR 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 + A EIL EG +I ++GD+D DG ST + RS+G ++I Y++P+R +DGY Sbjct: 61 DLTNACEILNRKINEGEKIRIIGDYDVDGVCSTFVLYDFFRSMG-ADISYVIPHRVQDGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG--DTLPAAEA 173 G++ ++V++A G IVT DNGI+++ V+HA+ +G+ V++TDHH + LP A+ Sbjct: 120 GINIDIVNKAKEDGIDTIVTCDNGIAAYEQVKHAKEIGLTVLITDHHDIPVNNDLPPADT 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 + NP DCN+P K L G GVA+ L+ ++ + + + L AL T Sbjct: 180 VTNPKREDCNYPFKGLCGAGVAYQLI----NHYAEKYGNNSAKLKTEIKNKYLAFTALAT 235 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR-DAQKLAASDLGFALGPRLN 292 + DV+ L NRI+ +G+ I + G++ALLEV+ + ++ GF +GP +N Sbjct: 236 ICDVMELIGENRIIVKKGLKAIYNTE-NVGLRALLEVSGLVNKDEITVYHCGFIIGPMIN 294 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 A+GRL+ + L L + A ANEL LN RK+I + I A + E E D Sbjct: 295 ASGRLESAVKAIKLFLESDRERALSEANELQGLNNERKDITEQSLIRATEIAESSEYLND 354 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 + L P+ H+ + GI+A RIKE+F++P + F A G +KGSGRSI+ +M + + Sbjct: 355 KVLVILV---PDCHESIAGIVAGRIKEKFYKPTLIFTYAERG-IKGSGRSIEDYNMFEEI 410 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLE----EDKFKLF---QQRFGELVTEWLDPSLLQGE 465 + KFGGH MAAG SL+ E++ ++F ++ E L L+ + Sbjct: 411 SKCSE----CFSKFGGHPMAAGFSLKGETTEEQIEVFNKLRKMLNE--NTTLTEEELKPK 464 Query: 466 VVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFR-LLQQRLVGERH--LKVMVE 522 + D L P +T E+ + L P+G P F + R++G+ + +K+ + Sbjct: 465 IFFDMELPPYYVTEELIEELLRFEPYGTGNKVPTFARRNMYIQTYRVIGKNNNAIKLELT 524 Query: 523 PVGGGPLLDGIAFNVDTALWPD---NGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 G G + + I F + +++ + Y INE+RG +++Q+ I+ Sbjct: 525 DGGEGQVHNAIWFGDASVFEEYLLNKEEKKLDIIYSPQINEYRGFKNIQLKIEEYR 580 >UniRef50_Q02C20 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02C20_SOLUE Length = 582 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 195/586 (33%), Positives = 282/586 (48%), Gaps = 32/586 (5%) Query: 4 QIQLRRREVDETADLPA--ELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGV 57 + L + A L A ++ R+ A+RG A R ++ + + + Sbjct: 13 RWVLPAPDAAVVAALAAALKIGMPAARVLAARGFGDADAARRFLEPAFEELHDPLSMRDM 72 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 A+E + A R+ RI++ GD+D DG TS L + G Y VP+R +DGYG+ Sbjct: 73 PAAIERIARAIRDRERILIYGDYDVDGTTSVVLLTKVIELAGGE-ARYHVPHRLKDGYGM 131 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 PEVV+ A +G +LIV+VD GI + V A LGI VIVTDHHLP LP A A++NP Sbjct: 132 RPEVVEAAAEQGVKLIVSVDTGIRAGEVVRRANELGIDVIVTDHHLPETELPPALAVLNP 191 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 N DC + K+L G GVAF ++ AL + R L L A+ TVADV Sbjct: 192 NRLDCGYMEKNLCGAGVAFKVIQALLPHIGWPADKVRRVSES-----FLKLAAIATVADV 246 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR--DAQKLAASDLGFALGPRLNAAG 295 VPL NRI+ G+ + G++ALL+VA DA A + F + PR+NAAG Sbjct: 247 VPLTGENRIIVACGLRGLG-TVRNVGLRALLDVAGFTPDATPPNARQVAFQIAPRMNAAG 305 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+D V L L + AR LA +L N R+ +E ++ + D Sbjct: 306 RMDTARAVVELFLTSDAERARELAKQLHEQNAERQAVEAEIRETCEQIA------VDGAE 359 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALER 414 L Y WH+GV+GI+ASR+ ER HRPV + DG +GSGRSI H+ +ALE Sbjct: 360 SALVYYAENWHRGVLGIVASRLVERLHRPVFVLSRNPEDGLAQGSGRSIPAFHLLEALES 419 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + P + LKFGGH AAG+++E + F++RF L + V D L Sbjct: 420 M----PELFLKFGGHKHAAGVTMEAARVVEFRERFNAFAATRLSAEDYRRRVEIDAVLEL 475 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 E+ + L P+G P P+F + + + E+HLK+ V G G L Sbjct: 476 GEINEQTTGELFGLAPFGHGNPPPMFAVLNVEVASSVVWKEKHLKLNVRQNGRGLSLKA- 534 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEF---RGNRSLQIIIDNIWP 576 +N + V LA+ L+ + + RG + I+ ++ P Sbjct: 535 -WNFAARVGELPPGARVDLAFNLEEDAYSAARGYPAWAAILRDVKP 579 >UniRef50_Q87EB5 Single-stranded DNA exonuclease n=23 Tax=Bacteria RepID=Q87EB5_XYLFT Length = 613 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 261/581 (44%), Positives = 372/581 (64%), Gaps = 17/581 (2%) Query: 6 QLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILY 65 ++ RR P +PPLLRR+Y +RG + + +L LS ++ A +L Sbjct: 14 KIIRRLSLPLVVWPDNVPPLLRRVYTARGCADPVTAQPCLAQLLSPAMLSNMQAATVLLT 73 Query: 66 NAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQA 125 + RI+VVGDFD DGAT+ A++V +R LG N+ + VPNR GYGLS +V++ Sbjct: 74 EVIKANGRILVVGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVEEL 133 Query: 126 HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFP 185 L+VTVD+GI+ HAG+ A++ G V+VTDHHLPG+TLPAA+ I+NPNL FP Sbjct: 134 APLQPALLVTVDHGIACHAGIAAAKARGWKVLVTDHHLPGETLPAADVIVNPNLPGDLFP 193 Query: 186 SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAI-----------PNLAELLDLVALGTV 234 SK+LAGVGV FY++LALR L + P+L LLDLVA+GTV Sbjct: 194 SKTLAGVGVIFYVLLALRARLYPAARAECEGQETRIHSSISQKNRPDLTSLLDLVAVGTV 253 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+VPLD NNR L G+ R+R G+ G++AL+EV+ RD +L A+D+GFAL PRLNAA Sbjct: 254 ADLVPLDTNNRALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLNAA 313 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALT-LCEKLERSRDT 353 GRL+DM++G+ LLL ++ AR +A L+ +N R+ ++QGM +A + + + +S Sbjct: 314 GRLEDMALGIELLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAEQAVAQAMAQSGGV 373 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG--TLKGSGRSIQGLHMRDA 411 LP + ++ P+WH GV+G++AS++K++ HRPV+A APA G L+GS RSI GLH+RD Sbjct: 374 LPMAVCLFDPDWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIRDV 433 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L LD+ YPGM+ KFGGHAMAAGL+L+ + +F++ F V +D ++LQ E+ SDG Sbjct: 434 LVALDSGYPGMIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSDGE 493 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLD 531 L+ E+ A+ LR GPWGQ FPEPLFDG F +LQ R++ ERHLK+ V G L+ Sbjct: 494 LAADELDALHARALRLGGPWGQGFPEPLFDGEFEVLQWRVLKERHLKMEVRYSGRHDALN 553 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIID 572 I FN D R ++LAY+L +++RG ++Q+I++ Sbjct: 554 AIYFNG---WQGDPPARRLRLAYRLVCDDYRGGDAIQLIVE 591 >UniRef50_D2R2J0 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Planctomycetaceae RepID=D2R2J0_9PLAN Length = 590 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 173/585 (29%), Positives = 280/585 (47%), Gaps = 20/585 (3%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSGV 57 + +I + + L P++ +L +RG+ + + G+ + L G Sbjct: 3 RWRIHAHDADRIAYLERTTGLSPIIVQLLVARGIYQPDAAKEFLDAKFGGLRDPELLPGA 62 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 +A E L+ A +I+V GD+DADG T T++ + ++ L ++ Y VPNR E+GYGL Sbjct: 63 TEAAERLFAAIEAQRKIVVYGDYDADGMTGTSILLGCLKLL-RADASYYVPNRLEEGYGL 121 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 S ++ A+GAQL+++VD GI+S + A+ LG+ +IVTDHH LP A ++P Sbjct: 122 SNTALESLAAKGAQLVISVDCGIASLSEARRAKELGLELIVTDHHEFASELPEAAVCVHP 181 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 L +P L G GVA + AL + L + L A+GTVADV Sbjct: 182 RLPGTAYPFGGLCGAGVALKVAWALCQKASQSKKVTDAMRTY--LLSAMGLAAIGTVADV 239 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQK-LAASDLGFALGPRLNAAGR 296 VPL NRIL G++ + + G+ ALLE+ ++ L++ D+ F + PRLNAAGR Sbjct: 240 VPLVDENRILVRHGLTYL-KSQPMIGLGALLELTGLTKKQSLSSEDIAFTIAPRLNAAGR 298 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + V LL DN A LA + LN +R+ +E+ +Q+ A+ ++ D Sbjct: 299 FGQAQLAVELLTTDNASRAASLAEYIHQLNSSRESLERSIQLAAVKQAKEQFNPDD--DP 356 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT--LKGSGRSIQGLHMRDALER 414 L + WH GV+G++A R+ E+F+RPV+ A G GS RS+ G ++ +AL Sbjct: 357 ALVLAGRGWHAGVIGLVAGRLAEKFNRPVVLIALDQLGLKPGTGSARSVAGFNLHEALTA 416 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 G A AAGL +EE K + F++ F E + PS GE+ D Sbjct: 417 SGEHLVGYGGH----AAAAGLRIEESKVEAFREAFCEFAASQIRPSERTGELRIDAESQL 472 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGHFR--LLQQRLVGERHLKVMVEPVGGGPLLDG 532 E+ + + + P+G P PL + + +G + ++ G + G Sbjct: 473 CEVNVSTIRQIEQMEPFGCGNPRPLLCASGVTLVEPPKRIGGGERHIAIKLQQAGVTMRG 532 Query: 533 IAFNVDTALWPDNGV-REVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + F + + +AY+ INEFRG + ++ + + P Sbjct: 533 VGFGMGDQCDELAQAVGPLDIAYRPVINEFRGRVTAELQLVDWRP 577 >UniRef50_Q12ES6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Polaromonas sp. JS666 RepID=Q12ES6_POLSJ Length = 600 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 261/604 (43%), Positives = 363/604 (60%), Gaps = 42/604 (6%) Query: 3 QQIQLRRREVDETADLPAE-LPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAV 61 +IQ+R L + PLL +LYA+RGVRS EL+ + +LP L G +A Sbjct: 1 MKIQVRDVPPRSVWALQQGGVHPLLAQLYAARGVRSMDELDDGLGKLLPPASLRGTREAA 60 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 +L +A G +I VV D+D DGAT+ A+++ +R LG N+ YLVP+R DGYGL+P + Sbjct: 61 RLLADAMAAGQKICVVADYDCDGATACAVALRGLRLLGAQNVGYLVPDRVIDGYGLTPPI 120 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP-----GDTLPAAEAIIN 176 ++ A GA ++VTVDNGI+S GV A++LG+ V+VTDHHLP LPAA+ I+N Sbjct: 121 AERVKATGADVLVTVDNGIASLEGVARAKALGMQVLVTDHHLPALKDGQVVLPAADVIVN 180 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERN-------------------- 216 PN DC+F SKS+AGVGV FY++LALR LR++G F Sbjct: 181 PNHPDCSFESKSMAGVGVMFYVLLALRAELRERGVFGRPAAGPPPGGTAPSGGSTAHEVA 240 Query: 217 ----IAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVAN 272 I P L LL LVALGTVADVV LDANNR L QG+ RIRAG G+ L A Sbjct: 241 SVGAIPQPKLDTLLPLVALGTVADVVKLDANNRRLVAQGLKRIRAGALPAGLAGLFTAAG 300 Query: 273 RDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEI 332 R A D GFALGPR+NAAGRL DM++G+ LL D+ A LA LD +N+ R++I Sbjct: 301 RHAALATTFDFGFALGPRINAAGRLSDMTLGIECLLTDDAARADELARMLDGINRERRDI 360 Query: 333 EQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAF---- 388 E GM+ +A + + + P +A++ PE+H+GVVGI+ASRIK++ HRP F Sbjct: 361 EAGMREQAQLAADAMIDEDEEPPPAIAIFDPEFHEGVVGIVASRIKDKLHRPTFVFAASQ 420 Query: 389 APAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQR 448 AP + LKGSGRSI G H+RDAL+ + +PG++L+FGGHAMAAG ++ E++F+ F+Q Sbjct: 421 APGKEHELKGSGRSIAGFHLRDALDLVAKRHPGVLLRFGGHAMAAGCTIAEERFEQFEQA 480 Query: 449 FGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ 508 ++ EWLD + L + +DGPL +V L WGQ F P F ++ Sbjct: 481 LQQVAHEWLDAATLTRRLDTDGPLPAEYRRTDVVDTLHR-EVWGQGFAAPTFSEEVEVVS 539 Query: 509 QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQ 568 QRLVGE+HL + ++ G +DGI F TAL V+LA++LD +E++G + ++ Sbjct: 540 QRLVGEKHLALKLKHQ--GQPVDGIWFGHTTAL-----PARVKLAFRLDADEWQGVKRVR 592 Query: 569 IIID 572 +++ Sbjct: 593 FLVE 596 >UniRef50_UPI0001C37215 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37215 Length = 675 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 172/580 (29%), Positives = 278/580 (47%), Gaps = 27/580 (4%) Query: 1 MK-QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK--GMLPWQQLSGV 57 MK + + R+ ++ PL A++G + + + S+ G+ + + Sbjct: 1 MKNWTVGVPDRKTVSGLVFGCQVSPLTAAALAAKGYTTPESVADSLNVDGLSDPFMIKDM 60 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 + A E + A +I V GD+D DG ST + + G +++ Y +P R +GYGL Sbjct: 61 DIAAETINEAIDNEEKICVYGDYDCDGIMSTVILFSYLFEAG-ADVVYYIPER-SEGYGL 118 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + +D+ G LIVTVDNGIS+ + E+ G+ +++TDHH GDTLP AEAI++P Sbjct: 119 NKNAIDKIRDDGVSLIVTVDNGISAISEAEYIYECGMKLVITDHHQQGDTLPRAEAIVDP 178 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 + DC K + G G+A L AL + + + DL A+ TVAD+ Sbjct: 179 HRHDCPSGFKHMCGAGLALKLTAAL-----------DGGDYTLAMEQFSDLAAIATVADI 227 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 V L NR L +GM I RP + AL +V + +++ ++ +GF L PR+NA+GR Sbjct: 228 VSLTGENRFLVSEGMRLIDNT-DRPALLALKKVCGLEDKEIDSTSIGFGLAPRINASGRF 286 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 L LC++ EA +A+ELD LN RK E + E + + Sbjct: 287 GSPRTAAELFLCEDPDEALDIASELDKLNTMRKSAENDIISEISAMIDS--DPSIIRKRV 344 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 + + WH GV+GI+A+RI+E F +P A DG ++GS R+ + +AL Sbjct: 345 IYLSGKNWHHGVIGIVAARIQEMFGKPCF-IASETDGEVRGSARAFGEFSVFEALTYASD 403 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 + KFGGH A G ++++ + F + E + + +D PL+PAE+ Sbjct: 404 ----ALSKFGGHPGAGGFTVKDGMTERFGELLEEYAAAN-HEIMPLLSLSADSPLTPAEL 458 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN 536 T + + L+ P+G +PLF + + + R +G M++ G + F Sbjct: 459 TFQNVEDLKKLEPYGMGNEQPLFYIENAEITEIRPMG-NGSHSMIKFKFGTTEYNAKMFR 517 Query: 537 VDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + P ++ L INEFRGNRSL I++ +I P Sbjct: 518 TSPDMLPVGKGDPAKMIVTLGINEFRGNRSLDILVKDIRP 557 >UniRef50_A8MGN3 Single-stranded-DNA-specific exonuclease RecJ n=11 Tax=Clostridiales RepID=A8MGN3_ALKOO Length = 587 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 176/609 (28%), Positives = 302/609 (49%), Gaps = 56/609 (9%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERS----VKGMLPWQQLSG 56 MK+ ++ + PL+ +L +R + + + + + +++ Sbjct: 1 MKKWFVKNKKFDYGRMSEKFNISPLICKLLVNRSITEERLISSFIDSNLDHLHDPKKMKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 V KA IL + RI ++GD+D DG ST + +A+ G +++DY +P+R +DGYG Sbjct: 61 VVKAASILKSKIETHKRIRIIGDYDVDGVISTYILFMALSKCG-ADVDYDIPDRIKDGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA------ 170 ++ +++++ + G I+T DNGIS+ +++A+ LG+ VIVTDHH Sbjct: 120 INRSIIERSKSEGIDTIITCDNGISAIEPIQYAKDLGLTVIVTDHHDIPFIEDEESKRTF 179 Query: 171 ----AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL 226 A+AIINP +C++ KSL G GVAF L+ L ++ I + L+ Sbjct: 180 ISSCADAIINPKQEECDYEFKSLCGAGVAFKLIQVLYEKMK---------IPMEESFRLI 230 Query: 227 DLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFA 286 + VA+ TV DVV L NRI QG+ I G+ AL++ + +++ ++ LGF Sbjct: 231 EFVAIATVCDVVDLIDENRIFVKQGLEAI-KTTNNLGLMALMKESGIESKSISVYHLGFI 289 Query: 287 LGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK 346 +GP +NA+GRLD+ G+ LL+ ++ E LA EL LNQ RK++ +A+ + E Sbjct: 290 IGPCINASGRLDNAKKGLRLLIAEDREEVDSLAKELYELNQDRKDMTIKGVEKAIEIIEG 349 Query: 347 LERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGL 406 + +Y PE H+ + GI+A RIKE++H P I + +G +KGSGRSI Sbjct: 350 TDIKNH---KVFVIYMPEVHESLAGIIAGRIKEQYHVPTIVLTKSEEG-VKGSGRSIDCY 405 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 +M + L + L + KFGGH MAAGLSL+ED+ + +++ ++ L L + Sbjct: 406 NMFEELLKCKDL----LRKFGGHPMAAGLSLDEDQVENLREKLNQVTD--LTEEDLIPTI 459 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERH--LKVMVEP 523 D L + E+ + + P+G+ +PLF D + R+++ ++G+ LK+ + Sbjct: 460 NLDMGLEIDRIDYELIEDIERLSPFGKGNNKPLFGDKNIRVIKGHILGQNRNVLKLKLLS 519 Query: 524 VGGGPLLDGIAFNVDTALWPD-----------------NGVREVQLAYKLDINEFRGNRS 566 G +DGI F A N + +A+ IN + + Sbjct: 520 KQ-GKYMDGIYFGDIKAFEELITTRFGSDELERLYQGSNTNIVIDIAFYPTINTYMERSN 578 Query: 567 LQIIIDNIW 575 +Q+ I++ Sbjct: 579 IQLTIEDFR 587 >UniRef50_Q1PZA9 Similar to exonuclease RecJ n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZA9_9BACT Length = 577 Score = 564 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 175/585 (29%), Positives = 278/585 (47%), Gaps = 20/585 (3%) Query: 1 MKQQIQLRRREVD--ETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 M ++ + ++ + LL ++ +RG+ + ++ + L Sbjct: 1 MSKRWFIAPNNIELQTEIAGNLRISNLLAQILINRGITDVGAAKGFLQPQISTLSDPSNL 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +EKA + A R G +I++ GD+D DG T+TAL ++ + ++Y +P R E+G Sbjct: 61 PDIEKASVRINEAIRNGEKIVIYGDYDVDGLTATALMYRCLKMFD-ARVNYYIPERLEEG 119 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YGL+ E + + A G LI+TVD GIS+ E ARS GI +I+TDHH P +P A AI Sbjct: 120 YGLNAEAIAKLKAGGTDLILTVDCGISACREAEIARSYGIELIITDHHQPSQEIPDAFAI 179 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 INP L+ + +GVG+AF L ++ Q N L + LVALGT+ Sbjct: 180 INPKLKATEKTFRDFSGVGIAFMLAWSVGQHYFPQK--KVSNEFKDFLISAMGLVALGTI 237 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 ADVVPL NRILT G+ ++ K PG++ALLEV++ L S +G+ LGPR+NA Sbjct: 238 ADVVPLVGENRILTKYGLGALQQTKI-PGLQALLEVSSLTNINLDTSHVGYRLGPRINAP 296 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ D V V +L +A+ +A L+ N R+ ++ + A ++ Sbjct: 297 GRVSDAGVVVEMLTTACNEKAKEIALFLEEENNRRRAMQLDILSAARQKI--VDEINLDE 354 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 + + EWH G+VGI+AS+I E F+RP + A A + GS RSI HM DALE Sbjct: 355 TLAIVLADQEWHPGIVGIIASKIAEEFNRPAVMIAVADE-IGHGSARSIPSFHMLDALEC 413 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 M++ GGHA AAGL + D F+ ++ + L L + D + Sbjct: 414 CK----NMLISVGGHAQAAGLKIHPDNIGDFRTLLNRMMAQKLQKEDLVPFLNIDVAVDL 469 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLL-QQRLVGERHLKVMVEPVGGGPLLDG 532 + + + L+ P G+ P+F ++ + R +G + G + Sbjct: 470 STLNRGLLMELQLLSPHGEGNHIPVFAIKDLQIAGKPRRIGSNGQHLSFYVKQGNVSMKA 529 Query: 533 IAFNVDTALW-PDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 I F + + LA L N + N S+++ + +I Sbjct: 530 IGFGMGDEIDRLLKNGSTCSLAVVLKENNWMNNSSIELEVKDIKF 574 >UniRef50_C3WCZ7 Single-stranded-DNA-specific exonuclease recJ n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WCZ7_FUSMR Length = 853 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 173/583 (29%), Positives = 284/583 (48%), Gaps = 31/583 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERS----VKGMLPWQQLSGV 57 + + + +L + + L +R +R +++ + + + L V Sbjct: 3 NTRWIYKENSFSQNTNL--NIDRDILNLLYNRDIRDEEKIYKFINTSLDNIHSPLLLKDV 60 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 ++AVE + A + + GD+D DG TST+L LA+ +G + Y +P R ++GYGL Sbjct: 61 DRAVERILQAKENKEEVWIYGDYDVDGITSTSLCYLALSEIGITP-RYYIPLR-DEGYGL 118 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + E +D ++G ++I+TVD GIS+H +E+A SLG+ +IVTDHH + P A A+INP Sbjct: 119 NKEAMDYIKSQGGKVIITVDCGISAHPEIEYANSLGLEIIVTDHHEINNGNPPAYAVINP 178 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 D FP K +AGVG AF L+ AL L + L + LD+VA+GTVAD+ Sbjct: 179 KREDNQFPFKYMAGVGTAFMLIYALFDKLEKK----------EELYKYLDIVAIGTVADI 228 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVA--NRDAQKLAASDLGFALGPRLNAAG 295 VPL NRI T GM ++ GI L++ + +K D+GF + P NAAG Sbjct: 229 VPLLEENRIFTKFGMEQLNKSHW-LGISMLIKKIFEDYKTKKFNTYDIGFIIAPIFNAAG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RL+D V L + + + NEL N RKEI++ + AL E + D Sbjct: 288 RLEDAKRAVELFIEKDHRVCSEIINELLNNNTERKEIQEMILERALFKIENEKLFED--- 344 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALER 414 L + +H GV+GI+AS+I +R+++P I D S RSI+G +M +AL Sbjct: 345 SVLVVAEEGFHHGVIGIVASKILDRYYKPTIIMEIKPDERIATASCRSIEGFNMIEALNT 404 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + L+ +K+GGHA AAG S++ + F +R E E + S L V D + Sbjct: 405 MKELF----VKYGGHAGAAGFSIKIENINEFSKRINEYAKENIPESSLIKPVKLDITIPA 460 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPLL-DG 532 +++ + + P+G P PLF + + R +G+ M + + Sbjct: 461 YKISYDFIDKISLLEPFGFGNPSPLFALNNCEISGVRPIGKEKNHTMFNVRKDNLEIRNC 520 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + F+ D + +A+KL + F+ ++ ++++ Sbjct: 521 VWFSSDDVFNEMASISHADIAFKLKLETFKDKYMYKMYVEDMQ 563 >UniRef50_C6JNX8 Single-stranded-DNA-specific exonuclease recJ n=3 Tax=Fusobacterium RepID=C6JNX8_FUSVA Length = 860 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 168/584 (28%), Positives = 285/584 (48%), Gaps = 30/584 (5%) Query: 2 KQQIQLRRREVDETAD-LPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSG 56 + + + D L + L +R + +E++ + K + L Sbjct: 3 NTRWVYKDNPLKNNKDIKELNLDKDILNLLYNRNIIEKEEIKNFLDVDVKNIADPFSLKD 62 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 V+KAV L A + + GD+D DG TS +L LA+ LG ++ Y +P R ++GYG Sbjct: 63 VDKAVNRLVQAKENNETVWIYGDYDVDGITSVSLCFLALSELGI-DVKYYIPLR-DEGYG 120 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ E ++ G L++TVD GISSH + HA SLGI +IVTDHH + P A A+IN Sbjct: 121 LNMEAINYIKNEGGTLVITVDCGISSHEEISHASSLGIDMIVTDHHEINNGNPKALAVIN 180 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P D ++ K LAGVG AF ++ AL L + + LD+VA+GTVAD Sbjct: 181 PKREDNDYSFKYLAGVGTAFMMIAALFKTLDK----------EEEVYKYLDIVAIGTVAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVA--NRDAQKLAASDLGFALGPRLNAA 294 +VPL NRI +G+ +R + G+ L++ + D +K D+GF + P NA Sbjct: 231 IVPLLKENRIFVKEGLEHLRRSRW-LGLNMLIKKIFEDYDIRKFNTYDIGFIIAPIFNAV 289 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRL+D V L + + +L N RKEI++ + +A+ E + + Sbjct: 290 GRLEDAKKAVELFIEKDHRVCSAAIKDLLEKNSERKEIQEEIFEKAIEKIENEKLYEN-- 347 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALE 413 L + +H GV+GI+AS++ +R+++P I D G S RSI+G ++ +A+ Sbjct: 348 -SVLIVGEKGFHHGVIGIVASKVLDRYYKPTIIMEIKPDEGIATASCRSIEGFNIIEAIN 406 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 L ++K+GGH+ AAG S++ + + F ++ + ++ S L + D PL Sbjct: 407 NFSDL----LIKYGGHSGAAGFSIKIENIEEFSKKLNDYAKTAMEDSTLIKPIKVDRPLP 462 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ-QRLVGERHLKVMVEPVGGGPLL-D 531 +++ + + P+G P PLF + RL+G+ +M+ + G + + Sbjct: 463 FYKISYDFLDKISLLEPFGFGNPSPLFSLNNCQFDGLRLIGKDKKHIMMNVIKNGNEIRN 522 Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + FN D +R + +A+KL + ++ ++ I++I Sbjct: 523 CVWFNSDDIFENLVNLRNIDIAFKLKLETYKDRYQYKMYIEDIR 566 >UniRef50_C6LAA7 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Clostridiales RepID=C6LAA7_9FIRM Length = 598 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 183/598 (30%), Positives = 297/598 (49%), Gaps = 44/598 (7%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSG 56 M++ + +R + + RL +R V +E + + Q+ Sbjct: 22 MQKWVVAAKRADFGAIAEKFGIDQVTARLIRNRDVVGDAAIEEYLNGSLLNLHSAHQMKD 81 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +KA +L + +I ++GD+D DG +T + A++ G +N+DY +P+R DGYG Sbjct: 82 CDKAAALLADKIDAQKKIRIIGDYDIDGVCATCILYRALQLCG-ANVDYDLPDRILDGYG 140 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ ++D A G I+T DNGI++ V +ARSLG+ VIVTDHH PG+ LP A+A++N Sbjct: 141 LNRNLIDLAGDEGVDTILTCDNGIAAVEEVAYARSLGMTVIVTDHHEPGEVLPEADALVN 200 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P+ + C +P K+L G VA+ L+ L + I +L++L TV D Sbjct: 201 PHQKSCPYPYKNLCGAAVAYKLVTVLCEAM---------GIPQDESEKLIELAGFATVGD 251 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 V+ L NRIL +G+ ++ + PG++AL+ V N +++ + +GF LGP LNA GR Sbjct: 252 VMDLTGENRILVKEGLLQLNHTE-NPGLQALIRVNNLQDKEITSYHIGFVLGPCLNAGGR 310 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 LD + LLL + EA +LA EL LN+ RK + +A+ L E D Sbjct: 311 LDTAKKSLELLLAQSEAEATLLAEELLELNERRKAMTLEGYEQAVELIENGPMRDD---K 367 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 L +Y P+ H+ + GI+A R++ER++RP I G+ +KGSGRSI+ M L++ Sbjct: 368 VLVVYLPDCHESLAGIIAGRLRERYYRPAIVLTQ-GESAVKGSGRSIESYSMFQELQKCA 426 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 L+ LKFGGH MAAG SLE++ ++R L L ++V D P+ Sbjct: 427 DLF----LKFGGHPMAAGCSLEKENVGELRRRLN--AQTTLTQEDLTEKIVIDVPMPLGY 480 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVG-GGPLLDGIA 534 +T + + L P+G+ +P+F + +L R VG+ V + G ++D + Sbjct: 481 ITERLIEELSCLEPFGKGNSKPVFAEKNLDILSARAVGQSGRVVRLRVANAAGTVMDAVY 540 Query: 535 FNVDTALWPDNGVR-----------------EVQLAYKLDINEFRGNRSLQIIIDNIW 575 F T + ++ + Y I+E+ G RS+QI++ Sbjct: 541 FGDATLFREYVEEKYGRTETEKLFQGRRNAVQLSVIYYPSIHEYNGLRSIQIVVQKYQ 598 >UniRef50_Q8DJI0 Tll1243 protein n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DJI0_THEEB Length = 775 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 181/586 (30%), Positives = 290/586 (49%), Gaps = 30/586 (5%) Query: 2 KQQIQLR--RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQ-L 54 +Q+ L E + P L +Y RG+ + + ++ + P Sbjct: 25 QQRWLLPPIDPECHDALRRALGCHPSLAEIYLRRGLTTPTAVRAFLEPETLELPPPNAVF 84 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 ++ AVE+L A G ++ + GD+DADG TSTAL + A+R LG ++IDY +P+R +G Sbjct: 85 PDLDLAVELLQRAIARGDKMTICGDYDADGMTSTALLLRALRHLG-ADIDYEIPSRMHEG 143 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG++ +V + + RG +LI+TVDNGI++ + AR LG+ VIVTDHH LP A AI Sbjct: 144 YGINERIVQECYDRGVKLILTVDNGIAALHPILKARELGLTVIVTDHHDVPPQLPPAHAI 203 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NP L P +LAGVG+A+ L ++L L P + L +L LGT+ Sbjct: 204 LNPKLVPPTSPYHTLAGVGMAYILAVSLAQRL---------GNWRPLVRPLRELCTLGTI 254 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR---DAQKLAASDLGFALGPRL 291 AD+ PL NR QG+ + G++AL++VA L + +GF LGPR+ Sbjct: 255 ADLAPLTGVNRRWVKQGLQTLP-TSSLVGVQALMQVAGCLPEQDASLKPTAVGFRLGPRI 313 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NA GR+ D V + LL D+ A+ LA +A N+ R+++ ++ EA+ E+ + Sbjct: 314 NAIGRIGDPQVVIELLTTDDPDRAQELAALCEATNRRRQDLCAAIEAEAIAHLEETD-FD 372 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 L + P WH GV+GI+ASR+ ER+ PV + ++GS RSI H+ +A Sbjct: 373 PQQEWVLVIVQPNWHHGVIGIVASRLVERYGVPVFIGTYENETIIRGSIRSIPEFHVFEA 432 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 LE L +LK+GGH A G SL + ++ R L P L+ V D Sbjct: 433 LEATKDL----LLKYGGHKAAGGFSLRAEHLAAWRDRLRAFAQTCLKPEDLRPLVTLDAE 488 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLL 530 +S ++T + + P+G P+P+F ++L+Q +G++ + + G + Sbjct: 489 ISFEQLTWDFYTQVEQLQPFGSENPQPMFCSRGVKILEQTPMGQQGEHLKLTLEQNGQQM 548 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 A+ V +AY L + + G L++ + + P Sbjct: 549 TAKAWRWGP---FLPLPTRVDIAYHLTAHTWHGETQLELELKGVKP 591 >UniRef50_D0KXT7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXT7_HALNC Length = 597 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 253/590 (42%), Positives = 355/590 (60%), Gaps = 24/590 (4%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAV 61 +Q ++RR+ + + + + L + +RG+ +++ ++ +LP + G++ A Sbjct: 6 NEQRLIQRRQQPQIPEAMSSIDSRLAAILVNRGIVHPRQINPDLEFLLPPADMPGIDVAA 65 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 +IL +A RE RI+++GDFDADGAT+TAL V A+R++G ++Y +P+R GYGLSP + Sbjct: 66 DILADAVRENARILIIGDFDADGATATALCVRALRAMGAKQVEYTLPDRQRHGYGLSPAL 125 Query: 122 VDQAHARG---AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 + A +I+TVDNGI++ AGV A +L VI+TDHHLPGDTLP A AI+NPN Sbjct: 126 LKDWIAEADAPPDIILTVDNGIAAFAGVAAALTLNATVIITDHHLPGDTLPPAHAIVNPN 185 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 L +F SK++AGVGVAFY+M ALR L Q WF IA PNLA LDLVA+GTVADVV Sbjct: 186 LNGSDFASKAIAGVGVAFYVMAALRERLSAQDWF-AGGIARPNLARWLDLVAVGTVADVV 244 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 LD NNR L QG++RI+A +C PGI AL VA +D + +++DLGF +GPRLNAAGRL+ Sbjct: 245 SLDDNNRRLVAQGLARIQAQQCVPGISALFAVAGKDPRYASSTDLGFVVGPRLNAAGRLE 304 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTL-----CEKLERSRDT 353 DM +GV LL D+ AR A L+ +N R+ +EQ M +L+ R Sbjct: 305 DMRIGVDCLLADDPISARQYAMTLNEINHERRALEQEMLFSLKKQGKSSGLNELDLDRPI 364 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG----TLKGSGRSIQGLHMR 409 P ++ +HQGV+GI+A R+KER+ RPV FAP + LK SGRSI G+H+R Sbjct: 365 DPADWVIFDDSFHQGVIGIVAGRLKERWQRPVFVFAPENNDAPRAKLKASGRSIPGVHLR 424 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 D L + T P +M FGGHAMAAGLSL D+ F++ F + + Q V +D Sbjct: 425 DVLVSMATTAPDLMHAFGGHAMAAGLSLSFDQLDTFRRLFAREMAKHRLHFPDQAIVHTD 484 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGE-RHL-------KVMV 521 GPLS E+T++ AQ L+ PWG PEP+FD F +L++ + E RH K Sbjct: 485 GPLSANELTLDFAQQLQTCTPWGTDCPEPIFDNRFEVLERTPLKEGRHWRLRLRLLKTEP 544 Query: 522 EPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIII 571 G L + F + + LAY++DIN FRG ++LQ++I Sbjct: 545 ATPTIGADLTAVWFGIGDH---IPAGKYWHLAYRIDINRFRGQQTLQLMI 591 >UniRef50_B2IMS8 Single-stranded-DNA-specific exonuclease RecJ n=75 Tax=Streptococcaceae RepID=B2IMS8_STRPS Length = 744 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 180/582 (30%), Positives = 288/582 (49%), Gaps = 38/582 (6%) Query: 3 QQIQLR---RREVDETADLPAELPPLLRRLYASRGVRSAQ----ELERSVKGMLPWQQLS 55 + Q A L P + RL RG+++ + LE S++ + L Sbjct: 10 YEWQFALQVEDADFTKIAKKAGLGPEVARLLFERGIQNQESLKKFLEPSLEDLHDAYLLH 69 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++KAVE + A EG I+V GD+DADG TS ++ ++ LG + +PNRF DGY Sbjct: 70 DMDKAVERIRQAIEEGENILVYGDYDADGMTSASIVKESLEQLG-AECRVYLPNRFTDGY 128 Query: 116 GLSPEVVDQAHA-RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 G + V G LIVTVDNG++ H + A+S+G+ VIVTDHH +TLP A AI Sbjct: 129 GPNASVYKYFIEQEGISLIVTVDNGVAGHEAIALAQSMGVDVIVTDHHSMPETLPDAYAI 188 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 ++P D ++P K LAG GVAF L AL ++ ELLDLVA+GT+ Sbjct: 189 VHPEHPDADYPFKYLAGCGVAFKLACALLEEVQV---------------ELLDLVAIGTI 233 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+V L NRIL G+ + + R G++ +L++A A ++ +GF + PRLNA Sbjct: 234 ADMVSLTDENRILVQYGLEMLGHTQ-RIGLQEMLDMAGIAANEVTEETVGFQIAPRLNAL 292 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRLDD + + LL + EA +A + N+ RKEI Q + EA T+ D Sbjct: 293 GRLDDPNPAIDLLTGFDDEEAHEIALMIHQKNEERKEIVQSIYEEAKTMV-------DPE 345 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 + W+ GV+GI+A R+ E + VI DG KGS RS++ + + +AL+ Sbjct: 346 KKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNI-EDGRAKGSARSVEAVDIFEALDP 404 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 L+ A AAG++LE ++ Q + V E + + ++ D L Sbjct: 405 HRDLFIAFGGH----AGAAGMTLEVEQLSDLSQVLEDYVREKGADAGGKNKLNLDEELDL 460 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 +++E + P+G +P+F +F++ R +G + + ++ G + + Sbjct: 461 EALSLETVKSFERLAPFGMDNQKPIFYIKNFQVESARTMGAGNAHLKLKISKGEASFEVV 520 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 AF + + ++LA KL +N++ G +LQ+++ + Sbjct: 521 AFGQGRWATEFSQTKNLELAVKLSVNQWNGQTALQLMMVDAR 562 >UniRef50_A8F454 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermotoga lettingae TMO RepID=A8F454_THELT Length = 979 Score = 559 bits (1442), Expect = e-158, Method: Composition-based stats. Identities = 160/581 (27%), Positives = 276/581 (47%), Gaps = 35/581 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 M+ I+ ++ E A + L ++ +RG+ + R +K + L Sbjct: 1 MRWIIKQVDQQKVEFLSQEAGISLFLAKILVNRGIEDPKIANRFLKPSILDLHDPFLLRD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++ VE+L A E +++ GD+DADG T A+ + G DY +P R ++GYG Sbjct: 61 MDRVVELLLKAREENIPVLIYGDYDADGITGIAVYKEFLDRYGW-VTDYYIPKRMDEGYG 119 Query: 117 LSPEVVDQA-HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 + P V++Q +++TVD GI++ VE A+ V++TDHH G+ LP A A++ Sbjct: 120 IQPAVIEQFFKKFNKGIVLTVDCGITAIEAVEFAKKFNCLVLITDHHEVGEQLPDAAAVV 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P D ++P K LAGVGVAF ++ A+ L NI I + +LL+ VA+GT+A Sbjct: 180 DPKRPDDDYPFKDLAGVGVAFKVVSAISQKL---------NIQIEEIFDLLEFVAIGTIA 230 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+V L NR + G+ +++ +PG+ L + + + D+G+ + P+LNAAG Sbjct: 231 DMVKLVDENRFMVKTGLEKLKRT-GKPGLSILFKRLGINEPD--SRDIGYRVAPKLNAAG 287 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 RLD LL+ + A L N L N TR+EIE + + A+ E+ +D Sbjct: 288 RLDSADDAFELLISRDETSAEKLVNLLFEYNSTRQEIESEIFMRAVEQIEERGLHKD--- 344 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + + WH GV+GI+A+R+ R+ +PV+ + + DG +GS RSI L++ + L+ L Sbjct: 345 PIIVVKGDNWHVGVIGIVATRLVHRYGKPVMVISNS-DGIARGSARSIPNLNLIELLQPL 403 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + +FGGH +A G SL+ + F + + + + D L Sbjct: 404 SS----YFYEFGGHPLAVGFSLDSNNVDDFAELLRNF---EIPIEDVPDVLEIDEDLQLE 456 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRL-LQQRLVGERHLKVMVEPVGGGPLLDGIA 534 ++ E + + P+G EP+F + + G+ H V + G ++ I Sbjct: 457 QINEETLKDIGKLEPFGHGNNEPIFVARNVIAESIKFFGQNHANVKMNFTVNGAKIEAIG 516 Query: 535 FNVDTALWP-DNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 F +D A +V + + + I I + Sbjct: 517 FGLDHAFDKSIYECNKVDIVFSIR----NHRHPFSINIIDF 553 >UniRef50_C0EW92 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0EW92_9FIRM Length = 591 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 168/610 (27%), Positives = 287/610 (47%), Gaps = 56/610 (9%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSG 56 M++ +R + P+ RL +R + + +E++R + + L Sbjct: 1 MEKWFIASKRADFNKIGEIFHISPVTARLMRNRSLTTVREMQRYLYGSLSDLYDSHLLKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +K EI+ G +I ++ D+D DG +S + ++ G +++DY +P+R EDGYG Sbjct: 61 ADKGAEIIKEKIETGKKIRIISDYDVDGVSSNYILYQGLKRCG-ADVDYKIPDRVEDGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGD---------- 166 ++ ++++A G I+T DNGI++ + + SLG+ +IVTDHH Sbjct: 120 INEHLIEKAAEDGIDTIITCDNGIAAAEQIAYGNSLGLTLIVTDHHDIPFQRQEDGSISY 179 Query: 167 TLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL 226 LP+A A+INP +DC +P +++ G V + + L +D I L Sbjct: 180 NLPSAAAVINPKQKDCPYPFENICGAVVVYKFIQVL---------YDLFGIDRRESEVFL 230 Query: 227 DLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFA 286 ++ A+ TV DV+PL NRI+ +G+ RI+ G++AL+E + + +K+++ GF Sbjct: 231 EIAAMATVCDVMPLCDENRIIVKEGLRRIQHTNI-TGLQALIEANHLEEKKISSYHFGFI 289 Query: 287 LGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK 346 LGP +NA+GRL + LLLC++ R A L LN RKE+ A E Sbjct: 290 LGPCINASGRLTSAKDALELLLCEDKELCRQKAEALTQLNAERKEMTANGVKAAKEYLES 349 Query: 347 LERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGL 406 + D L +Y P H+ + GI+A R+KE +H+PV +G LKGSGRSI+ Sbjct: 350 TGHAND---KVLVVYLPNCHESIAGIIAGRMKEHYHKPVFVITRTKEG-LKGSGRSIEAY 405 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 HM + ++ + KFGGH MAAG S++ED+ + F+++ L +V Sbjct: 406 HMYKEMNKIKECFD----KFGGHPMAAGFSMQEDRLEEFREKLNANA--TLTEDDFAEKV 459 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVG--ERHLKVMVEP 523 D L + ++ + P+G +PLF + R++G R LK+ + Sbjct: 460 HIDVALPISYLSESLINEFELLEPFGNENTKPLFAQKDLYIKGMRVLGTTGRCLKLFLSD 519 Query: 524 VGGGPLLDGIAFNVDTALWPD-------NGVREV----------QLAYKLDINEFRGNRS 566 G +D + F + + + + Y +NE+RG ++ Sbjct: 520 A-NGTSIDAMYFGESDVFLEELISFCGKEEAQRIQKGLSHHIWMDVTYYPQVNEWRGQKN 578 Query: 567 LQIIIDNIWP 576 +QI+I N Sbjct: 579 IQIVIQNYRF 588 >UniRef50_B1C9H3 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9H3_9FIRM Length = 793 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 159/585 (27%), Positives = 283/585 (48%), Gaps = 29/585 (4%) Query: 1 MKQQIQLRRR------EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLP 50 M+ +I ++ + + ++ L L + +G + E+E + + Sbjct: 1 MEYKIFKQKTSDNINYDFIDNLTKQFDISYLSALLLSIKGFSAFGEVETYLNPNISDLYD 60 Query: 51 WQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNR 110 ++K +E L R ++++ D+D DG TS+ + + + N ++PNR Sbjct: 61 PFLFKDMKKVMERLKEVIRNREKVVIFSDYDCDGVTSSIILYKVLSFMKV-NTKIIIPNR 119 Query: 111 FEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA 170 F +GYGLS E ++ L++T DNGI+S E + GI VI+TDHH P + LP Sbjct: 120 FTNGYGLSDESMEMIIDEEPSLVITTDNGITSVEETEILKDSGIDVIITDHHTPPEVLPE 179 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A AIINP + N+P L G GVAF + A + +++++L Sbjct: 180 AYAIINPKVEGDNYPFSELCGAGVAFKIACA----------AVKFFELDFDISQILVFAM 229 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPR 290 +GT+AD+V L + NR + G+ IR G+ AL++ ++ D KL ++GF +GPR Sbjct: 230 IGTIADIVSLKSENRTIASLGLDLIRNT-NNKGLNALIKKSDLDKNKLNCGNIGFQIGPR 288 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NAAGRLDD V L L ++ E +L++EL N RK+IE+ + ++ ++ + Sbjct: 289 INAAGRLDDAKKAVRLFLSEDEKEVDILSHELCEYNDQRKDIEESIFKKSEEYIKENDLL 348 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRD 410 +L L +Y ++++GV+G+ AS+I ++++RPV+ + + DG +K S RSI G + Sbjct: 349 ETSL--ILYVYGEDFNEGVMGVAASKICDKYNRPVVIMSDSEDGFIKASCRSITGFDIFK 406 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 L+ L+ KFGGH+ AAG S+E + + E + +L V D Sbjct: 407 CLDNSRELFS----KFGGHSAAAGFSIERENLDRLIEETNEYARKRKIENLFYKRVYYDT 462 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPL 529 P P+ + ++ + L P+G + +L R +G+ + + G Sbjct: 463 PAIPSNLNVKTSLELEKFAPFGIGNSRSILCLRDVKLTNVRAIGKDGTHLKFSVLYNGNY 522 Query: 530 LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 D I F++ L + + + + + +N ++G LQ I ++ Sbjct: 523 YDAIGFSMGHYLREYDFTKSFDIVFTMSVNSYKGREKLQFEIKDM 567 >UniRef50_Q049X0 Exonuclease RecJ n=22 Tax=Lactobacillus RepID=Q049X0_LACDB Length = 758 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 165/580 (28%), Positives = 288/580 (49%), Gaps = 40/580 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSG 56 MK Q + + +L PL +L++ RG+ + ++++ + + + Sbjct: 1 MKWQ-ERTAAPLASDLVEEFQLSPLTAKLFSLRGIDNEEKIDYWLHASENDLADPFLMHD 59 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV + A EG +I + GD+DADG T+TA+ + +G +++ Y +P+RF+DGYG Sbjct: 60 MDKAVGRINQALDEGEKITIYGDYDADGITATAIMTEMLTIMG-ADVHYFIPDRFKDGYG 118 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 S + A G +LI+TVDNG + V +A+S G+ VIVTDHH + P A A+++ Sbjct: 119 PSLDRYKDIVADGTKLIITVDNGATGIEEVAYAQSHGVDVIVTDHHTFKEEKPDAYALVH 178 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 N +P G GVA+ + A+ +E L+L +GT+ D Sbjct: 179 CNYPGQAYPFDDYCGAGVAYTIARAVLE---------------DTASEFLELAMIGTIGD 223 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V + ++ +G+ + RPG++AL+ A + D+GF++ PRLNA GR Sbjct: 224 MVKVSGEGHVIVKRGLEMLNES-SRPGLEALIRNAGLTPGMIDEEDVGFSIAPRLNACGR 282 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L D S+ V LLL ++ GEA+ LA++++ LN RK++ Q A + ++ Sbjct: 283 LADASLAVRLLLAESPGEAQELADQIEKLNNERKDLTQATMQAAEAQIKSRGYQKE---A 339 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 L +Y P WH+GV+G++A++I E++H+P + G +KGSGRS QG ++ +AL+ Sbjct: 340 TLTLYDPAWHEGVMGLVANKIVEKYHKPTLMLTKNEAGLVKGSGRSSQGFNLFNALKP-- 397 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 + +FGGH A GLS E+ ++ F + + DG +SP + Sbjct: 398 -FEGKSITQFGGHDFACGLSTTEENLNQLRRDFNQSYKA--GEKAPEKVQEYDGTISPLD 454 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 + + L AGP+G P+P+F ++ R + + MV P + + F Sbjct: 455 VDLTSVYDLAQAGPFGTDNPQPVFLLDRPQISNFRPM-RKGCSFMVGP------VRAVDF 507 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + +++ + KL N F+G ++Q I ++ Sbjct: 508 DHGLNQTVLPYLQQ--MLVKLASNTFKGKTNVQFRIVDLH 545 >UniRef50_C2M9T5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9T5_9PORP Length = 593 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 174/599 (29%), Positives = 284/599 (47%), Gaps = 41/599 (6%) Query: 1 MKQQIQLRRREVDE-----TADLPAELPPLLRRLYASRGVRSAQELERS----VKGMLPW 51 M + Q +E +P + RL RG+R+ E +R ++ + Sbjct: 1 MTNEWQYTPFTPEEEVGGSQLAHALRIPAVAGRLLYRRGIRTEAEAQRFFHPSLEDLHDP 60 Query: 52 QQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN--IDYLVPN 109 + ++ AV+ L A I++ GD+D DG T+ +L +RS GCS + Y +P Sbjct: 61 FLMQDMDLAVKRLNKALGRKEHIMIYGDYDVDGTTAVSLIYKYLRSAGCSEHLLSYYIPG 120 Query: 110 RFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLP 169 R ++GYG+S VD AH GA LI+ VD GI + + +A++LGI I+ DHH P D LP Sbjct: 121 RDDEGYGVSYRGVDHAHEIGATLIIVVDCGIKAINEIAYAKTLGIDFIICDHHHPDDQLP 180 Query: 170 AAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLV 229 A A+++P DC++P + L G GVAF M A + +L +LLDLV Sbjct: 181 DAAAVLDPKRPDCHYPFEELCGCGVAFKFMQAFGM---------DNGFPSASLFKLLDLV 231 Query: 230 ALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGP 289 A+ AD+V + NRIL G+ ++ G+K +++ + +K+ +D+ + +GP Sbjct: 232 AVSIAADLVSVMDENRILAHYGLRQLNRNPSM-GLKGIIKTCGLEGRKITMADIIYKIGP 290 Query: 290 RLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLER 349 R+NA+GR+ + V LLL ++ ++ +D N R+E+++ EA+ L + Sbjct: 291 RINASGRMMNGREAVDLLLSNDAKTTARMSELIDEYNVRRRELDRSTTDEAMQLLQ--VN 348 Query: 350 SRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMR 409 + +Y P+WH+G++GI+ASR+ E +RP I D + GS RS+ G+ + Sbjct: 349 PELAHQPIVVLYQPDWHKGIIGIVASRVAEYTNRPTIVLTGTSDRIV-GSARSVGGIDIY 407 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 +E L +L FGGH AAGL+L DK F+ + + D Sbjct: 408 SIIEEARDL----LLNFGGHTYAAGLTLLPDKLPDFRAYIQSVNAVVDTDRAQSTPIEVD 463 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ---QRLVGERHLKVMVEPV-- 524 + E+T + ++ P+G +PLF +L + VG V+ + Sbjct: 464 AEIELREVTQRLYTTIQRFAPYGPDNYQPLFVTQ-QLYDGGGSKAVGRNGEHFKVDAIPS 522 Query: 525 -GGGPLLDGIAFNVDTALWPDNGVR------EVQLAYKLDINEFRGNRSLQIIIDNIWP 576 G GIAFN A L Y++D N F G SLQ+++ ++ P Sbjct: 523 LGSRKHCPGIAFNQAPAFRFIKKSSAGRASAPFALVYQIDENHFNGVVSLQLLVKDVKP 581 >UniRef50_C7HTZ0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HTZ0_9FIRM Length = 581 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 165/597 (27%), Positives = 284/597 (47%), Gaps = 43/597 (7%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 M + ++ + + L + A+R + + ++ + + L Sbjct: 6 MTKWYIYNKKNNYLSNLKNKNITKLEALILANRDIVDPKVVDSFINPTLAKLHDPFLLKD 65 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +EKA++++ G I + GD+D DG +ST + + +I Y +P+R DGYG Sbjct: 66 MEKAIDLIIETMENGESIRIFGDYDQDGISSTMTLLDGLLYF-YDDISYDIPDRVIDGYG 124 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT--------- 167 +S ++D+A L++T DNGI++ V+ + GI VIVTDHH Sbjct: 125 ISDRMIDRAIEANVSLVITCDNGITAIDQVKKLKENGIKVIVTDHHQVSKKEDGEWVEQI 184 Query: 168 LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLD 227 LP A+ +INP D +P L G GVAF L+ AL L + L LL+ Sbjct: 185 LPQADCVINPKRLDNTYPFDDLCGAGVAFKLIQALYQRLDGD---------MEYLYGLLE 235 Query: 228 LVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFAL 287 VA+GTV DVV L NRI +G+ RI + + IKAL+E + + ++++A LGF + Sbjct: 236 YVAMGTVCDVVSLTDENRIFVREGLKRINNTE-KLAIKALVEENSWN-REVSAYTLGFII 293 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 GP +NA GRL + + +L+ D+I + R A +L +LN RKE+ + L + + Sbjct: 294 GPCMNATGRLSTAKLAIDMLMEDDIEKIRTYAKKLVSLNTERKELTNIGLEKTLEIIKDK 353 Query: 348 ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAP-AGDGTLKGSGRSIQGL 406 + D + + + + GI+A RIKE+F++P I + +G LKGSGRSI+ Sbjct: 354 KYYNDD---IIIVDVENIEESICGIIAGRIKEKFNKPTIIMTQSSQNGILKGSGRSIEAY 410 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 ++ + + + + FGGH MA GLS+ DK + F+Q+ + L + Sbjct: 411 NIYKEVFEIKDI----LESFGGHPMACGLSIRSDKVEEFRQKLND--KSKLKKDDFVNII 464 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVG 525 D + ++++E A+ L+ P+G+ P+ F + + ++G+ + + + Sbjct: 465 NIDAQIPIDKLSLEFAESLQRLEPFGKDNPKAKFADKNLFIKNINMIGKNNNTMKMILNK 524 Query: 526 GGPLLDGIAFNV-------DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 G ++ I FN + + + DINEF G R+LQ+ + +I Sbjct: 525 NGRDIEAIKFNAQKDYKYLSDKFKANIIGNRIDAVFYPDINEFNGRRNLQVKLIDIR 581 >UniRef50_C4FWR9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FWR9_9FIRM Length = 777 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 170/584 (29%), Positives = 277/584 (47%), Gaps = 38/584 (6%) Query: 3 QQIQLR------RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM----LPWQ 52 + Q R + +V E RL +RG+ + +E++ + M Sbjct: 6 YEWQYRSLPDDWQDKVAEWQQAGLGYSDTFLRLCLARGLETLEEIKNATNQMPQTFHDAF 65 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 L +E+AVE + A + I++ GD+DADG TST + + LG + + Y VPNR Sbjct: 66 LLYDMERAVERIQAAIEDQEVILIYGDYDADGITSTLILYETLEMLG-ARVIYYVPNRLV 124 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 DGYG + +G QLI+T DNG++ ++ A G+ VIVTDHH TLP+A Sbjct: 125 DGYGPNLARYQDFVNQGVQLILTCDNGVAGFEAIKWAMQAGVDVIVTDHHEVQATLPSAY 184 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A+++P ++P L+G GVA L AL + EL++L A+G Sbjct: 185 AVVHPRHPQGHYPFPDLSGAGVALKLATALLGEVPT---------------ELVELAAIG 229 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 292 TV+DVV L NR + G+ +R R G++ +LE D + + A +GF +GPRLN Sbjct: 230 TVSDVVSLRDENRTIVLSGLQLMRDTM-RIGLRLMLEEEQVDMENMTADTIGFTIGPRLN 288 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 A GRL D + + LL + EA+ L ++ NQ RK++ + + + Sbjct: 289 AIGRLGDPTPALELLKTQDEEEAQELLALINEKNQERKDLVAKIMDQVSQRL-----GQG 343 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAF-APAGDGTLKGSGRSIQGLHMRDA 411 +P + P W GVVGI+A R+ E + RP + F A +G KGSGRS + +H+ D Sbjct: 344 PIPHIIIESDPSWPAGVVGIVAGRLSEHYQRPALIFQYQADEGQYKGSGRSTEAVHLFDW 403 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L + + +FGGHA AAG+++ +D+++ F D + + D Sbjct: 404 LTDIKE----HLAQFGGHAQAAGMTVAQDQWQEFVSALQAKAQVQTDIGTRKAPLTIDLS 459 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLL 530 L E+ + Q ++ GP+G +P+F ++ Q RL+G + G L Sbjct: 460 LKLGEVGTDFIQEVQLLGPFGMDNDKPVFAIEEAKINQMRLIGTNGQHAKLVLGQDGQEL 519 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + I F+ + + LD+N+++ S Q+++ +I Sbjct: 520 NAIGFDFADRMRDRQVGDSLTAVGHLDLNKWQNRISPQLLLSDI 563 >UniRef50_B1I335 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I335_DESAP Length = 857 Score = 556 bits (1433), Expect = e-157, Method: Composition-based stats. Identities = 181/580 (31%), Positives = 281/580 (48%), Gaps = 39/580 (6%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSGV 57 + +++ + + L +L +RG+ + +E + + L + Sbjct: 6 EWRLKKPEPVLSRMLARECGISELTAQLLVNRGIITVREARIFLDGDLDSLWSPYLLRDM 65 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 V+ + A G +I+V GD+DADG T+ AL V A+R+L ++Y +P R DGYGL Sbjct: 66 APTVDRIRGALAAGEKILVYGDYDADGMTAAALMVAALRTL-RGRVEYHIPWRA-DGYGL 123 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 +PEV+++A A G L++TVD G+S+ +E A++LG+ V+VTDHH P LP ++NP Sbjct: 124 NPEVLERAAADGVGLVITVDCGVSARREIERAQALGLDVVVTDHHEPQGLLPP-VPVVNP 182 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 DCN+P K LAGVGVAF L AL + L L LGTVADV Sbjct: 183 RRPDCNYPFKDLAGVGVAFKLAQAL--------------LGDELPPPFLGLACLGTVADV 228 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 +PL NR+L G+ ++ PGI AL + D+ F + P LNAAGR+ Sbjct: 229 MPLRGENRLLVRHGLPQLLD---NPGIAALGACQGENP---VVRDVAFGIAPLLNAAGRI 282 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 +GV +LL GEA LA +L ALN+ RK +E+ + L L +P Sbjct: 283 GRPELGVEILLAG-PGEAAALAAQLAALNEERKYLEEKVSAAVLAELSGLP----EVPPV 337 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 + + +WH GV+GI+ASR+ R RPV A GD +GS R+ +G ++ +ALE Sbjct: 338 VVLAGEDWHPGVIGIVASRLAGRLGRPVALIAVDGD-EGRGSIRAGEGWNLVEALESCRE 396 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 ++ +FGGH AAG +L F++ L E+ + ++ ++ Sbjct: 397 ----VLTRFGGHRCAAGFTLPTAAIPGFREAICRYAR-HLPVPASGPELEIEALVTLDQL 451 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN 536 T EV + + PWG P+ R+++ VG + + G ++ GI F Sbjct: 452 TPEVLREIEALEPWGAQNDPPILAAEDLRVVKHYRVGREGEHLKLVLEQGRTIISGIGFG 511 Query: 537 VDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + A R V LA+ IN + G + +I + + P Sbjct: 512 LAPAHPEIAECRRVHLAFVPVINRWNGRETPEIKVVDWKP 551 >UniRef50_A8ZTX7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTX7_DESOH Length = 573 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 195/581 (33%), Positives = 294/581 (50%), Gaps = 20/581 (3%) Query: 1 MKQQIQLRRREVDETADLPAELP--PLLRRLYASRGVRSAQELERSVK----GMLPWQQL 54 M + I R+ + + LP + L +RG+ S ++ + + + Sbjct: 1 MTRNINTRQPDPSAVTAIAKALPCSDIAASLLVNRGILSVKQARHFLSATVADLPSPFSM 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 G++ AV +++A I+V GD+DADG T+TAL V + G + + + +P+R +G Sbjct: 61 KGIDTAVARIHSALINHETILVFGDYDADGITATALLVGFLTQAG-ATVRHHLPHRILEG 119 Query: 115 YGLSPEVV-DQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA 173 YGL P + + A A L++TVD GI+SHA R GI +I+TDHH P A A Sbjct: 120 YGLKPRHITEVAATHKASLLITVDCGITSHAAALACREAGIDLIITDHHQAPAEPPTALA 179 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 +I+P C LAGVGVAFYL++ALR FLR++G++ R PNL DLVA+G Sbjct: 180 VIDPAQAGCPSGLGDLAGVGVAFYLLIALRAFLREKGFWKTR--PEPNLKACCDLVAIGA 237 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 +AD+VPL NRIL G+ +R RPGI+AL+ A L+A D+ F L PRLNA Sbjct: 238 IADIVPLTGENRILVRTGLELLR-TPSRPGIEALIAGAKIKKPALSAEDVAFRLAPRLNA 296 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 GR+D + + LLL + A +A L+ LN R+ IE+ + E + + Sbjct: 297 PGRIDHAATALELLLAETKEVAVKIAGRLNRLNTKRQMIEEEISGEIQQIVNDRINT-IK 355 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 L + H +WHQGV+GI ASR R+ PV +GD GS RSI GLH+ DAL+ Sbjct: 356 ERRSLVLAHRQWHQGVIGIAASRAARRYSLPVALITISGD-MGIGSARSIPGLHLYDALK 414 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 L+ FGGHA AAG + + F+ +F +V + P V D L+ Sbjct: 415 GCARLFED----FGGHAQAAGFRIRMENLAAFETQFEYIVRQQTTPGDFVPAVEVDCELA 470 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 +T + + + P+G PEPLF + R ++ RH K+ + G + Sbjct: 471 MDRITNTLVREIEGLSPFGAGNPEPLFSARNVRASDTFMINGRHRKMTLAHPGTDRGIAA 530 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 I FN + + R + ++L + + G+ + QIII++ Sbjct: 531 IWFNTPASHQESSFFRR--ILFRLRQDTWNGSGAPQIIIED 569 >UniRef50_B0CAF5 Single-stranded-DNA-specific exonuclease RecJ n=11 Tax=Cyanobacteria RepID=B0CAF5_ACAM1 Length = 795 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 177/599 (29%), Positives = 301/599 (50%), Gaps = 42/599 (7%) Query: 2 KQQIQLRRRE--VDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPW-QQL 54 +Q+ Q+ E + + + L PLL + A++G+ S + ++ + + + Sbjct: 8 QQRWQIADPEHTLVDKIAIATGLSPLLAAVLANQGIGSVEAAQQFLAPESQSLPSPLEAF 67 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 + ++ +L +A +I + GD+DADG TSTAL + +R+LG +++DY +P+R ++G Sbjct: 68 PDLAASLTLLQDAIASRHKIAICGDYDADGMTSTALLLRVLRALG-ADVDYAIPSRMQEG 126 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG++ +V++ A L++TVDNGI+++ + AR LG+ VI+TDHH LP A AI Sbjct: 127 YGINQRIVEEFAADNVTLVLTVDNGIAAYDPIVRARELGLTVIITDHHDLPPQLPPANAI 186 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NP L + P + LAGVGVA+ L L + LL+L LGT+ Sbjct: 187 LNPKLVPEDSPYRGLAGVGVAYVLATLLAQEQGNTTLITP----------LLELFTLGTI 236 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR--DAQKLAASDLGFALGPRLN 292 AD+ PL NR +G++ + + G+++L++V+ Q L +GF LGPR+N Sbjct: 237 ADLAPLVGVNRRWLQRGLALLPHSRL-AGVQSLMQVSGCVSADQALKPDAIGFRLGPRIN 295 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 A GR+ D + LL D+ G A A + + NQ R+++ ++IEA+ L E L R Sbjct: 296 AVGRIADPQTVIELLTTDDPGIAFARAMQCEQANQHRRQLCADIEIEAIELVETLVRQGK 355 Query: 353 TL-----PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG--TLKGSGRSIQG 405 + + HP WH GV+GI+ASR+ ER+ PV + ++GS R I Sbjct: 356 APWQPEGDWVIMLVHPGWHHGVIGIVASRLVERYGLPVFIATYEAEDHTHIRGSARGIPE 415 Query: 406 LHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGE 465 + AL+ D + ++GGH A G SL D+ + + + L L+ Sbjct: 416 FDVFAALQACDE----ALGRYGGHRAAGGFSLATDQLEKMRSHLRTYAHQTLQIDQLKPL 471 Query: 466 VVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGER--HLKVMV- 521 V D S ++ ++ + + P G PEP+F + +++QR VG+ HLK+ + Sbjct: 472 VTVDAQASFTQIDWDLYEQINQLHPCGIGNPEPIFWTANVEVVEQRPVGKDKSHLKLTLA 531 Query: 522 --EPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW-PI 577 E L+ G+A+ T + + +AY+L N + +L++ I I P+ Sbjct: 532 HTESDDRQQLIKGMAWRWGTYYPL---PQRIDVAYRLRENTWNQQTNLELEILGIREPV 587 >UniRef50_B1ZV73 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Verrucomicrobia RepID=B1ZV73_OPITP Length = 573 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 188/588 (31%), Positives = 290/588 (49%), Gaps = 30/588 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQ----ELERSVKGMLPWQQLSG 56 M+ E E A + +L L G+R A L ++ + L Sbjct: 1 MRWTHTPVPTEEIEALSKGAGVSRVLAELLLRAGLRDAGGCATFLAPALAALQDPFLLRN 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 V+ A L A ++V+GD+D DG +STAL V +R G ++VP R EDGYG Sbjct: 61 VDAAATRLRQAIANQESVVVLGDYDVDGVSSTALLVSVLRRFGLLP-RFVVPRRSEDGYG 119 Query: 117 LSPEVVDQAHARG-AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 LS +D+A G L V +D G +SH V + R GI VIV DHH + +I Sbjct: 120 LSRSAIDRALEGGRPHLFVVLDCGTNSHDEVAYLREQGIDVIVLDHHRSKERALDGM-LI 178 Query: 176 NPNLR----DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 NP++ + P + L VG+ F L L LR + I L + LDLVAL Sbjct: 179 NPHVHRDDTGADGPWRHLCTVGLVFKLAHGLLKQLRAENHPVAFRI---KLRDHLDLVAL 235 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQK-LAASDLGFALGPR 290 GTVAD+VPL NRIL G++ ++ + RPG++AL+EVA + + D+ F LGPR Sbjct: 236 GTVADLVPLLGENRILARHGLTILQESR-RPGLRALMEVAGVKPENGINPVDISFRLGPR 294 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NA+GRL D ++ V LLL +++ + A +LDA N+ R+EIE+ + EA L E Sbjct: 295 INASGRLADAALSVELLLSEDLAFCQQTAQQLDAFNRERQEIERKITEEAEQLIETHYAD 354 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRD 410 G+ ++ +WH GVVGI+A R+ +++RP + G+ KGSGRSI GL++ + Sbjct: 355 S----PGIVLFSEDWHPGVVGIVAGRVTRKYNRPCVVLGNEGE-FAKGSGRSIDGLNLVE 409 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 L ++ +GGH MA G++L ++ +F+++F V ++ + + Sbjct: 410 VLGTCCD----HLVSWGGHPMAVGIALRKEHLPVFREQFAAAVRTQAGDAIAEARLELAA 465 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ--QRLVGERHLKVMVEPVGGGP 528 L+P ++T + L P+GQ EP F +L+ + H + E G Sbjct: 466 WLTPEQITPRLMDELEQLHPFGQGNAEPRFGVRGVVLRTAPEIFKTFHFRFNFED-QRGR 524 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 L G+A+ + + L P V LA +L N F + LQ+ + + P Sbjct: 525 RLHGVAWKMASRLLPV--GVPVDLAVELKWNHFNDRKFLQLCLVDWRP 570 >UniRef50_D2LJ47 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJ47_RHOVA Length = 609 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 181/587 (30%), Positives = 286/587 (48%), Gaps = 22/587 (3%) Query: 3 QQIQ---LRRREVDETADLPAELPPLLRRLYASRGVRSAQE---LERSVKGML-PWQQLS 55 + I+ + + LP ++ R+ A+RGV + L +++ + + Sbjct: 28 KWIERLAPQDAHIAAAIAQRHNLPEIVGRILAARGVSLDEVADVLNPTLRALCPDPSTFT 87 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++KA + + A G RI + GD+D DGA+S+AL + G + +P+R +GY Sbjct: 88 DMDKAADRIARAIETGERIAIFGDYDVDGASSSALLKRFLAWHGL-DARIYIPDRITEGY 146 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G + + Q GAQLIVTVD G +S ++ A G+ V+V DHH + LP A A++ Sbjct: 147 GPNGPAIAQLIEDGAQLIVTVDCGSTSFEALDVAAKRGVEVVVVDHHQVNEELPVAHAVV 206 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NPN +DC L GV F L +A + LR +G + + P+L LD+VAL TV Sbjct: 207 NPNRQDCLSGQGHLCAAGVTFLLCVAAQRRLRAKGAYAK--SPAPDLLGWLDIVALATVC 264 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 DVVPL NR QG+ +R + PG++AL + A + + LGF LGPR+NA G Sbjct: 265 DVVPLSGVNRAFVVQGLKVLR-NRRNPGLRALADAAGVNKPP-SPYTLGFVLGPRINAGG 322 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ D S+G LL ++ E R +A LD LN+ R+EIE EA ++ D Sbjct: 323 RIGDASLGARLLASEDDIETRRIAETLDRLNRERREIEIKTVEEAAAWADRTLM-EDPSA 381 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALER 414 + P WH+G+VG+ ASR+ ERF RP + F+ D G GS RS+ G+ + A+ Sbjct: 382 PIIIAGSPSWHKGLVGLAASRLTERFQRPCLIFSQDDDAGESTGSARSVSGVDIGAAVRG 441 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 G+ K GGH MAAG++++ + + + E+ DG L P Sbjct: 442 AVE--AGVAKKGGGHTMAAGITVDTARLHELAAFLRAALDPAYRVASAAPELAIDGVLKP 499 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 T++ L AGP+GQ P P F R + + HL++ ++ V G + + Sbjct: 500 RAATLDFCAQLEAAGPYGQGNPAPRFSLASVRPTMIKEISGGHLRLALQDVDGSQ-ISAV 558 Query: 534 AFNVDT----ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 AF A +A +++ +E+ G ++ I+++ P Sbjct: 559 AFRAAQTEIGAALAAGRDLACHVAGRIERDEWGGKSRIEFHIEDVAP 605 >UniRef50_Q03W56 Single-stranded DNA-specific exonuclease n=3 Tax=Leuconostoc RepID=Q03W56_LEUMM Length = 655 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 178/586 (30%), Positives = 292/586 (49%), Gaps = 36/586 (6%) Query: 1 MKQQ-IQLRRREVDET---ADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQ 52 M Q + + ++ + + + A RG + + ++ + Sbjct: 1 MNQNNWNILPQPSEKVVRQLSAQLNISQFMSTIVAQRGYTDPEAAFKYLQPSVEQLHDPM 60 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 L +++ +E L +A G +I+V GD+D DG TSTA+ V A+ LG +++ +PNRF Sbjct: 61 LLHDMDRTIERLQDAAFGGEKIVVYGDYDMDGVTSTAIMVEALEVLG-ADVTPYIPNRFS 119 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 DGYG + + + A GAQLIVTVDNG+S VE+A S GI VI+TDHH TLP A Sbjct: 120 DGYGPNIDTYKKLIADGAQLIVTVDNGVSGQEAVEYAMSQGIDVIITDHHEMPATLPNAY 179 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A+I+P +P L+G GVAF + AL ELLDLVALG Sbjct: 180 AVIHPRHPKGQYPFGDLSGAGVAFKVAQALLNEG------QPVEDQTELPTELLDLVALG 233 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVAN-RDAQKLAASDLGFALGPRL 291 ++D+V L NR+L G+ +I RPG+ A+L+ A +D + + + + F + PRL Sbjct: 234 EISDMVSLTDENRVLVSWGLKQINVSP-RPGLTAVLKNAGKKDNEPVISETVSFKIAPRL 292 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NA GRL D S+ + LLL + E+ +A+E++A+N R+EI + + A + E Sbjct: 293 NAVGRLGDASLSLQLLLSQDPEESTAIASEVEAINAQRQEIVEEVFGSAKQMALSDEYKN 352 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 D L + +WHQG++GI+ASR+ E +P I + DG KGSGR+ + Sbjct: 353 DQ---VLVIAGQDWHQGILGIVASRLVELLQKPTIVLSLT-DGVYKGSGRTFGDFDLYQF 408 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 + LY FGGHA A GL++ ++ + +++ + + + + Sbjct: 409 MNTFHDLYD----TFGGHASALGLAISPEQLDVLKEQVRLNSAKL---QIHAKPISINTT 461 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVG--ERHLKVMVEPVGGGP 528 LS E++ E + LR P+G +P+F ++ + +G ++H+K+ +E Sbjct: 462 LSVNEISTETYEELRLLEPFGTGNQQPVFGLQQPKINKVTTMGNLKQHIKLALENN---- 517 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 ++ + FN + + A L IN FRG +++Q+++ I Sbjct: 518 -VEAVGFNHPDWVPMVANPLGISFAATLGINYFRGRKTIQLLLTAI 562 >UniRef50_C7NEA4 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Fusobacteriaceae RepID=C7NEA4_LEPBD Length = 997 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 169/577 (29%), Positives = 290/577 (50%), Gaps = 34/577 (5%) Query: 14 ETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFR 69 E +L + + + ++ SRG+ + +E+ + + L +EK V + A + Sbjct: 47 ENTNLSSVIDNDILKILYSRGITTEKEIREFLNPKLGNIQNPYGLQDMEKTVLEIEKAIK 106 Query: 70 EGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARG 129 E I + GD+D DG TST++ +A++ LG N++Y +P R ++GYGL+ E + + G Sbjct: 107 EQKNIWIYGDYDVDGITSTSILYMALKELGAENVNYYIPIR-DEGYGLNNEALKKIKKSG 165 Query: 130 AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHH-LPGDTLPAAEAIINPNLRDCNFPSKS 188 A L++TVD GI++ VE A S+ +P+I+TDHH L GD +P A ++NP + +F + Sbjct: 166 ADLVITVDCGITAFPEVEFANSINLPIIITDHHNLHGDKVPDAITVVNPKRPENDFSFEF 225 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 LAGVG F ++L L + + + LDLVA+GTVAD+VPL NRILT Sbjct: 226 LAGVGTIFMVILCLYERIGKKA----------KAYKYLDLVAIGTVADIVPLMEENRILT 275 Query: 249 WQGMSRIRAGKCRPGIKALL-EVANR------DAQKLAASDLGFALGPRLNAAGRLDDMS 301 G+ ++ K G++ LL ++ + + + + D+GF + P NAAGRL D Sbjct: 276 KFGLEQLSRSK-NKGLRFLLYKLFSIQNSDFNEKTEYNSYDVGFIIAPVFNAAGRLKDAK 334 Query: 302 VGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMY 361 + V LL+ DN E ++ EL N RKE++ + + E+ + D + Y Sbjct: 335 MVVKLLISDNDREIEIIVKELINKNFERKELQNEIVEKVEKHIEESDLKED---YVIVDY 391 Query: 362 HPEWHQGVVGILASRIKERFHRPVIAF-APAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 PE+H GV+GI AS+I +++++P I +G GS RSI ++ +AL+ + P Sbjct: 392 SPEYHHGVIGIAASKIVDKYYKPAIIIEVKEDEGIAVGSCRSIGNFNILEALQSM----P 447 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 + +KFGGH+ AAG ++ +LF+++ + L + D + +++ E Sbjct: 448 ELFVKFGGHSGAAGFTIGIKNLELFKKKINKFAKTKLKEEDFVKIIEIDKQIPIQKISYE 507 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRL-LQQRLVGERHLKVMVEPVGGGPL-LDGIAFNVD 538 Q++ P+G P P F + L + +GE +M + G + + FN Sbjct: 508 FFQIIELLKPFGFGNPMPTFRTNNVLFENIKFIGENKNHIMFDIKQKGFFNRNAVWFNSG 567 Query: 539 TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 N + YKL F+ ++ I+++ Sbjct: 568 EYFKELNENLFYDIVYKLKTEMFQDRYYTKVYIEDVK 604 >UniRef50_Q2S0E3 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0E3_SALRD Length = 584 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 195/596 (32%), Positives = 305/596 (51%), Gaps = 39/596 (6%) Query: 1 MKQQIQLR---RREVDETADLPAE-LPPLLRRLYASRGVRSAQELERSVKG----MLPWQ 52 M + R +V LP L R A R V + +E + + + Sbjct: 3 MTYRWTPRALDEPDVVPRLQRELNDLPAPLARALALREVTTLEEAKHFFRADRSALHDPF 62 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 ++G++ A L +A +GT ++V GD+D DG T TAL +R G ++ + +P+R+E Sbjct: 63 GMAGMDAAAARLSDAIDDGTSVLVYGDYDVDGTTGTALFTDFLRDRGV-DVSFFIPDRYE 121 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 DGYGL +D A RGA L+V +D GI++H +A+ LG+ +I+ DHH P +TLP A Sbjct: 122 DGYGLCRRGLDAAAERGASLVVALDCGITAHEEAAYAQELGLDLIIADHHTPKETLPEAL 181 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A+++P D ++P + L G G+AF L+ A+ R+ A E LDL+AL Sbjct: 182 AVLDPKRPDDDYPFEELPGCGLAFKLVQAV---------LAHRDEAPDAAYEYLDLLALS 232 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAAS-DLGFALGPRL 291 T +D+VPL NR+L +G+ ++ RPG++AL + A+ D Q + ++ ++ F LGPR+ Sbjct: 233 TASDIVPLYGENRVLMAEGLEALQRST-RPGVQALADAADLDLQTVTSTGNIVFTLGPRI 291 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NAAGR++ S V LLL + EA A EL+ LN+ R+ I+ ++ + + Sbjct: 292 NAAGRMEHASSAVELLLARSYEEAEPHAAELEQLNRERRRIDDTIEE--EAVERAERQIT 349 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 P L +Y P+WH GV+GI+AS I ERFH+P I G+ +KGS RSI+G+++ +A Sbjct: 350 SRSPHALVLYDPDWHLGVIGIVASSIVERFHKPTILLTHNGE-AVKGSARSIEGINIYEA 408 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L ++ +FGGH AAG+SLE D F+ RF + V E + P LL + D Sbjct: 409 LADC----EDVLTQFGGHDHAAGMSLEADDIDAFRDRFDDAVGERVTPELLTPSIKVDAS 464 Query: 472 LSPAEMT---MEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGER--HLKVMVEPVG 525 + + +L+ GP+G P P+F ++ R VG HLK V Sbjct: 465 VDLDTIGSVADRFWAVLKQFGPFGPANPTPVFHAEDLDVVSARTVGSDDSHLKFEVRQRD 524 Query: 526 --GGPLLDGIAFNVDTALWPDNG----VREVQLAYKLDINEFRGNRSLQIIIDNIW 575 G D I F + L V+L + L+ N + G +LQ+ ++ Sbjct: 525 ASSGQTYDAIGFGMGEKLSVLRESQDTGTPVELLFSLEENTWNGRTTLQLKARDVR 580 >UniRef50_C8WA12 Single-stranded-DNA-specific exonuclease RecJ n=4 Tax=Coriobacteriaceae RepID=C8WA12_ATOPD Length = 1120 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 171/580 (29%), Positives = 286/580 (49%), Gaps = 30/580 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLSG 56 + + + ++ + + PL+ R+ +RG E + + L Q + G Sbjct: 9 RWSVLTQDVYLESLFEKELHVTPLVARVLVARGFTDVAEAQEFLSPSLQRDWLDPQCIPG 68 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + + + A E +I V GDFD DG +ST L LA+R LG +++ +P+RF +GYG Sbjct: 69 MAEVANRVQKAIVEQQKIAVFGDFDVDGMSSTCLLTLALRRLG-ADVLPYIPHRFGEGYG 127 Query: 117 LSPEVVDQ-AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 LS E + + R LI+TVDNGI++ V GI V++TDHH P D +P + Sbjct: 128 LSKEALARVLLDRKPDLIITVDNGIAAAQEVAWLLEQGIDVVITDHHEPADLVPQGVPVT 187 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P L + + PS+ LAG GVA L+ L + + +D+ LGT++ Sbjct: 188 DPKLIE-DCPSRELAGAGVALKLVQVLGQLQNQPQLW----------LDYIDVAMLGTLS 236 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D++ L+ NR L +G+ R++ G RPG+ AL VA +D +++A +L F++ PRLNAAG Sbjct: 237 DMMMLNKENRALVSEGVKRLQKG-LRPGLVALAAVAGQDIAQISADNLPFSIIPRLNAAG 295 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ + + LLL ++ EA +LA +L+ +N R+ IE + EAL +++ Sbjct: 296 RMGTTDIALDLLLTEDAEEATILAGKLEEINAERRAIEAKLTDEALEQAKEIYDGG---- 351 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + + WH+GV GI+ASRI R+H P I F DG +GSGRS+ + + A+E+ Sbjct: 352 HAIVLAKEGWHEGVKGIVASRIVNRYHVPCILFTI-QDGVARGSGRSVGSVDLFHAVEQC 410 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L ++FGGH A G+++E K F++R E++ E L + ++ Sbjct: 411 ADLT----VRFGGHQGAVGVTVETSKIDAFRKRLSEVMAE-LPEEEFESSGEVTALVNLD 465 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQR-LVGERHLKVMVEPVGGGPLLDGIA 534 E+T+ L P+GQ +PLF +++ R VG + G + I Sbjct: 466 EITINSIDALEALQPFGQGNKKPLFGVKGVVMKNRSRVGAGGAHLCFMASNGISSISSIM 525 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 F V L ++ ++G ++++ +I Sbjct: 526 FRTPHVEAAAEYDGAVDLIFEAVNETWQGRTKPKLMVRDI 565 >UniRef50_B0MLV1 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MLV1_9FIRM Length = 672 Score = 550 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 169/580 (29%), Positives = 282/580 (48%), Gaps = 30/580 (5%) Query: 1 MKQQIQLRRREVDETADLPA--ELPPLLRRLYASRGVRSAQELERSVKG--MLPWQQLSG 56 MK+ +R + L LP LL L SRG+ +A++ ++ G + ++ Sbjct: 1 MKK-WLVRNTDNALAMKLKTDTGLPMLLCSLLVSRGIYTAEQAQQYFNGTELSDPLLIAD 59 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV+ + A +I V GD+D DG TST + + ++G +++++ +P R E+GYG Sbjct: 60 MDKAVQAIEEAVDNEVKITVYGDYDCDGVTSTVMLFTHLDAIG-ADVNWYIPTR-EEGYG 117 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ + + H G LI+TVDNG+S+ E LG+ ++VTDHH + LP AEAI+N Sbjct: 118 LNENAIRKLHEDGTGLIITVDNGVSAVNEAELIYELGMKLVVTDHHQLPEILPKAEAIVN 177 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P+ +D N P K LAG GVA L++AL + L + DL A+GT+ D Sbjct: 178 PHRQDDNSPYKELAGCGVALKLIMALERDV------------EGVLEQYADLAAIGTIGD 225 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 VV L NRI+ +G+ ++ + G++AL+ A DA+ + ++ + F L PR+NAAGR Sbjct: 226 VVALTGENRIIVKRGLLEMQYSE-NQGLQALINAAGLDAESITSTGIAFGLCPRINAAGR 284 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 D LL+ A + A EL+ LN RK+IE + A + + Sbjct: 285 YDSPKAAAELLMAQTGQIAEIKAQELNELNAKRKQIESDILEMAKAQL--IADPKAFNSR 342 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 L + W+ G++GI+++R+ E + +P I GD +GS RSI+G + AL+ Sbjct: 343 VLIVCGEGWNHGIIGIVSARLLELYEKPCIVIGIEGD-EARGSARSIEGFSLYTALDACS 401 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 + +FGGH AAG SL +DK F + E PS+ +D ++ Sbjct: 402 E----HLTRFGGHTKAAGFSLPKDKVDDFIAQLRSYADEKF-PSMPVMTTEADIEPELSD 456 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 + + + LR P+G+ PLF ++ R + + G + F Sbjct: 457 LEISSIENLRHLQPYGEENNAPLFLMRNCTIISSRPLKDGKY-TSFSAEYKGSQFKFLCF 515 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + +V + ++INE+ +S+ + + +I Sbjct: 516 GTSFDKFGYYPGDKVDVLSHIEINEYNDKKSVSVRVKDIR 555 >UniRef50_D1AWA1 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWA1_STRM9 Length = 883 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 169/586 (28%), Positives = 291/586 (49%), Gaps = 32/586 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQEL----ERSVKGMLPWQQLSG 56 M+ + L + + + + + + ASRG+ +++ S++ + +L Sbjct: 1 METKWILSETK-SKLTNFDLPIDNNILNILASRGIVDEKDIVNFINPSLENLEDPLKLKD 59 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + A + +A +E I + GD+D DG TST+L LA + +G NIDY +P R +GYG Sbjct: 60 LGLAASYILDAIKEYKNICIYGDYDVDGITSTSLLYLAFKKIGAKNIDYYIPLR-NEGYG 118 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG--DTLPAAEAI 174 L+ + + + +G LI+TVD GISS+ VE SL + I+TDHH LP A A Sbjct: 119 LNKDAIQEIKNKGTDLIITVDCGISSYHDVEFINSLDMKAIITDHHDIPSDKKLPRALAC 178 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 INP D + ++AGVGVAF L L L + + LD+ +LGT+ Sbjct: 179 INPKRLDNEYSFPNIAGVGVAFLLAYELFRRLGIK----------EEIYSYLDIASLGTI 228 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD++P+ NRI+ G+ +++ G++ +L N ++L D+ F + P NAA Sbjct: 229 ADIMPIIKENRIIVKYGLEKLKNS-SNLGLRTILNKLNLKDKELTTGDISFKIAPVFNAA 287 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRL D +GV LL+ DN E +LA+ L + N RK+I+ + ++ ++L + Sbjct: 288 GRLADAKLGVKLLISDNQNEINILADNLISNNIYRKKIQDEI---ITSVLDELREKDISN 344 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALE 413 L + P +H G++GI+AS++ E +++P I +G S RS++G ++ AL Sbjct: 345 KYILISHSPNYHHGIIGIVASKVLETYYKPCIIMEENLEEGIAVASCRSVEGFNITKALS 404 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + L ++KFGGHA AAG +++ + +F+++ E L+ L + D + Sbjct: 405 YVSNL----LIKFGGHANAAGFTIKLENIDIFKEKIEAYAKEQLENIKLTKNIKIDMKIP 460 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLL-QQRLVGER--HLKVMVEPVGGGPLL 530 +++ E Q L P+G P PL ++ + VG HLK ++ G + Sbjct: 461 AQKISYEFIQSLNLLKPFGFGNPTPLLMSENCIIHNPKTVGSNEQHLKFDIDQK-GFSVK 519 Query: 531 DGIAFNVDTALWPDNGVREV-QLAYKLDINEFRGNRSLQIIIDNIW 575 + I FN + L + +KL+ NE++ I+I+++ Sbjct: 520 NAIWFNGGSNLQELRKNHIFYDVVFKLETNEYKDRFYPSIMIEDMK 565 >UniRef50_C5NYP0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYP0_9BACL Length = 753 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 174/580 (30%), Positives = 279/580 (48%), Gaps = 33/580 (5%) Query: 2 KQQIQLRRREVDETADLP-AELPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSG 56 K + + +L + + ++ +R + +++ + Sbjct: 4 KYNWIYPNYDENFIKELESYSISKNIAKILNARNITDMTSVKKYFSDEYEEGYDPFLMHD 63 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV+ + A +I+V GD+DADG TST L V + S+G +N+ +PNRFE+GYG Sbjct: 64 MQKAVDRINEAIENEEKILVYGDYDADGITSTVLLVETLISMG-ANVSSYIPNRFEEGYG 122 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + E + G LI+TVDNGI+ V+ A LG VIVTDHH DT+P A AII+ Sbjct: 123 PNKEAFTKIIDSGITLIITVDNGIAGVEEVDLANELGCDVIVTDHHKIQDTIPNAYAIIH 182 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P + N+P K LAGVGVAF L AL D LLDLVA+GT+AD Sbjct: 183 PEHPEGNYPFKKLAGVGVAFKLAHALLEIFPDF---------------LLDLVAIGTIAD 227 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V + NRI QG+ I R G+K LLE++ D + + +GF + P+LN+ GR Sbjct: 228 MVSITDENRIFVKQGLELINEDP-RIGLKMLLELSGIDTK-IDEQTVGFYIAPKLNSIGR 285 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 +D +G+ L+ + AR LA +++ N RK++ + + + ++ E E+ + Sbjct: 286 MDSAKLGLTFLMAEEPVTARALAEQIEQYNIQRKQVTEDIVKDVISKIENSEKKQ---KN 342 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 + + +H+GV+GI+AS I E++ +PV +G LKGS RSI ++ A+ ++ Sbjct: 343 VIMVSGE-YHEGVLGIVASNIVEKYQKPVFIM-NEKEGVLKGSARSIFDFNIYVAMNKIS 400 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 L+ L FGGH +AAG S E+ F+ ++ E+ + L+ D S + Sbjct: 401 DLF----LAFGGHTLAAGFSFEKSNFEKIEEFLDNEFEEFKQNNNLKANKNIDIVTSLED 456 Query: 477 MTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 ++ + L P+G F +P + + +L + G + + LD I F Sbjct: 457 ISYQFLNSLDALKPYGMDFEKPTVLIENAMVLNKAYFGSEKQYLRLTIADEVGNLDCITF 516 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + L +D N F G LQ I +I Sbjct: 517 KDSVTFDKVEKNDIIDLVCNIDKNNFNGRTKLQAHIIDIH 556 >UniRef50_A1AWT7 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Bacteria RepID=A1AWT7_RUTMC Length = 573 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 257/564 (45%), Positives = 369/564 (65%), Gaps = 14/564 (2%) Query: 17 DLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIV 76 ++P L+++YA+RG+ + L ++ +L L ++ A+ +L A RI++ Sbjct: 13 SYSDDIPTFLKKIYAARGI-NESHLSLNLIHLLKPNFLQ-LDVALVLLEQALLNQKRILI 70 Query: 77 VGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD-QAHARGAQLIVT 135 VGDFD DGAT++ ++V ++R +G +D+LVPNRFE GYGLS E+V + LI+T Sbjct: 71 VGDFDCDGATASVVAVKSLRMMGAKFVDFLVPNRFEHGYGLSEEIVKLAIQEKQPDLIIT 130 Query: 136 VDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVA 195 VDNGISS GV+ A+S I VI+TDHHLP TLP A+ IINPNL+ C F SK+LAGVGV Sbjct: 131 VDNGISSFDGVKLAKSSNIQVIITDHHLPSKTLPQADIIINPNLKGCEFLSKNLAGVGVC 190 Query: 196 FYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRI 255 FYL A +T L +F I P+L +LDLVALGTVADVV LD NNRIL QG+ RI Sbjct: 191 FYLFSAFKTHLIKCNYFTNYKITPPDLRNMLDLVALGTVADVVKLDQNNRILVNQGVKRI 250 Query: 256 RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEA 315 + KC PGI ALLE++NR + L ASDLGF++ PRLNAAGRL+D+S G+ LL ++I +A Sbjct: 251 QQKKCAPGILALLEISNRPSATLRASDLGFSVAPRLNAAGRLNDISRGIKCLLTEDINDA 310 Query: 316 RVLANELDALNQTRKEIEQGMQIEALTLCEKL-----ERSRDTLPGGLAMYHPEWHQGVV 370 R A EL+A NQ RK+ + MQ +A + + + + + ++++ P WH+G++ Sbjct: 311 RRYAQELEAFNQQRKQEQARMQDQAQAIVDAQELSITQENMSSDRFAISLFDPSWHEGII 370 Query: 371 GILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHA 430 GI+A ++KE +H PV FA + LKGS RSI +H++D L+ LD P ++LKFGGHA Sbjct: 371 GIVAGKLKEDYHCPVAIFAQSDSD-LKGSIRSIPSVHIKDLLDLLDRQNPDLILKFGGHA 429 Query: 431 MAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGP 490 MAAGLS++ + F F+Q F ++ LD + + E+++DG L +++++ AQLL DAGP Sbjct: 430 MAAGLSIKPENFTDFKQAFENVIQTHLDNRMPKVELLTDGELEAFDLSLDNAQLLVDAGP 489 Query: 491 WGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREV 550 WGQ F EP+F G F +++Q++VGE+HLK +++ G + D IAF L Sbjct: 490 WGQGFDEPIFYGEFEIIEQKIVGEKHLKFLLKLKGNTQVFDAIAFFQPPLLSMQAL---- 545 Query: 551 QLAYKLDINEFRGNRSLQIIIDNI 574 +AYKL IN +RG+ SLQ++I+ I Sbjct: 546 -VAYKLSINSWRGSISLQLMIEQI 568 >UniRef50_B0S1I9 Single-strand DNA-specific exonuclease n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S1I9_FINM2 Length = 580 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 153/604 (25%), Positives = 276/604 (45%), Gaps = 53/604 (8%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLS 55 M + + R + PL+ ++ +R + E+ + + Sbjct: 1 MNKWLINNRGNNYNEISKKYNIHPLIAKILLNRNITD---FEKFLNPNAENSYHNPFLMK 57 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++KAV+I+ + +I +VGD+D DG +ST + + I Y +PNR DGY Sbjct: 58 DMDKAVDIIISTIDHNEKIRIVGDYDQDGNSSTMTLLDGLGYF-TDKISYDIPNRMTDGY 116 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP-----GDTLPA 170 G+S ++D+ LI+T DNGIS+ ++AR GI +IVTDHH + +P Sbjct: 117 GISFSIIDKCIEDNIDLIITCDNGISAIEQCDYARKNGIKIIVTDHHQTIKHDGKEIIPN 176 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A+A++NP + C +P KSL G GVA+ L+ A+ ++ + LL VA Sbjct: 177 ADAVVNPQQQSCKYPFKSLCGAGVAYKLIQAIN---------IKKGYGMLQCENLLQYVA 227 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPR 290 +GTV D+V L NR +G+ I G+K L+ + + LGF +GP Sbjct: 228 MGTVCDIVDLKDENRYFVTKGLEEINNT-DNYGLKCLINMTGI-KNAVNVYSLGFIIGPC 285 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NAAGRLD +GV L +N+ A L LN+ RK++ + +A+ + E Sbjct: 286 INAAGRLDTAKLGVELFRDENMDNVEAYAKILVDLNEKRKKLTEDGFNKAVEIIENTALK 345 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMR 409 D L H+ V GI+A RIKE++++P + + + LKGSGRSI ++ Sbjct: 346 NDD---ILICNVEGIHESVCGIIAGRIKEKYNKPTLILTESANKNLLKGSGRSISEYNIF 402 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 + + ++ + FGGH MA GLS+E++K F+ + + L +++ D Sbjct: 403 EEFDEFREMF----VSFGGHPMACGLSIEKNKLDEFRTKVNK--NSKLTEEDFVKKILID 456 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGP 528 ++ ++ + + + P+G+ P P+ D ++ +++G+ + ++ + Sbjct: 457 SSFYIDKIDFDLIEEIGNLRPFGKDNPRPILGDKDVEIIFAKMIGKNQNVLKMKLLKNNK 516 Query: 529 LLDGIAFNVD-----------------TALWPDNGVREVQLAYKLDINEFRGNRSLQIII 571 +D I F + + + Y +IN+F +++Q+ + Sbjct: 517 AIDAILFTDAIEKYTYLLGKFGENVLKELENSISCNAYIDILYYPEINDFNNVKNIQLNL 576 Query: 572 DNIW 575 ++ Sbjct: 577 IDLR 580 >UniRef50_A6LJS2 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LJS2_THEM4 Length = 977 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 169/586 (28%), Positives = 287/586 (48%), Gaps = 39/586 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSG 56 MK +++ +E E ++P L +L SRG + + R + + L Sbjct: 1 MKWELKKIDKESSEKLAEELDIPLLTAQLLVSRGYVTPESAYRFINPSKNDLRSPFLLKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++AV+ L A + I+V GD+D DG T A V + G + Y +PNR + GYG Sbjct: 61 MDRAVKYLLLARNKKYPILVYGDYDVDGITGVATLVTFLSKHGW-KVKYFIPNRLDVGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 + PE+VD+ +G +L+++VD GI+S V+HAR LG+ V++TDHH +P A A+++ Sbjct: 120 IQPEIVDEYFKKGYRLLLSVDCGITSFDAVKHARELGMYVVITDHHTIKSGIPNAHAVVD 179 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P D +P K AGVGVA+ L+ AL L + + ELLD+VALGT+AD Sbjct: 180 PKREDETYPFKDFAGVGVAYKLISALALEL---------GLPDDEVNELLDIVALGTIAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V L NR + +G+ ++ + R G+ L++ + + + + D+G+ L P+LNAAGR Sbjct: 231 MVDLVDENRYIVKEGLKKLNQTQ-RVGLVQLMK--KLNIKNITSQDIGYRLAPKLNAAGR 287 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L L+ +N+ A LA L N TR+EIE + EA+ EK S+ Sbjct: 288 LYSAEDAYKLITTNNLSSAEQLAEILMGYNFTRQEIENKIFNEAVYKIEK---SKIKDLP 344 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 L + +WH GV+GI+A+++ +++++P + + DG +GSGRS+ G+++ D L Sbjct: 345 ILIVSGEKWHAGVLGIVATKLVQKYNKPSLVISL-EDGMGRGSGRSVDGVNIFDVLSSFS 403 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 + + GGH MA G S+ E+K + + + + D L E Sbjct: 404 RYFEEI----GGHPMAVGFSIREEKIDELIDVISKEFVDSHFEVDSK--IEIDTVLDIDE 457 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ-QRLVGE--RHLKVMVEPVGGGPLLDGI 533 + EV L P+G PEP+F L+ R G +++++++ +++GI Sbjct: 458 VNDEVINSLSYLEPFGHGNPEPVFLIKNSLVDRIRFFGNVVSNVRMVLK-GKNKNVIEGI 516 Query: 534 AFNVDTALWPDNGVREV----QLAYKLDINEFRGNRSLQIIIDNIW 575 F + + + V + + N + I + Sbjct: 517 GFGLRKNYYDIPAIHAVLTSLDIVANIRQN----GVGPFLNILDFK 558 >UniRef50_C7RHH6 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Anaerococcus RepID=C7RHH6_ANAPD Length = 576 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 177/597 (29%), Positives = 284/597 (47%), Gaps = 43/597 (7%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSA----QELERSVKGMLPWQQLSG 56 M ++E ++ L + A+R + + S+ + L Sbjct: 1 MANWYIYNKKENYINNLKNKDITKLEALILANRDIVDPFVVDMFINPSLDKLHDPFMLKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 V+KA++++ + I + GD+D DG S + + NI Y +P+R EDGYG Sbjct: 61 VDKAIDLIIETIQNNGEIRIFGDYDQDGIASVMTLLDGLLFY-YDNISYDIPHRVEDGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT--------- 167 +S + ++A A L++T DNGI+ V+ + I VIVTDHH Sbjct: 120 ISNNMSEKAIADKVSLVITCDNGITGFDQVKKLKENNINVIVTDHHQIEKEDNDGWVNQI 179 Query: 168 LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLD 227 LP A+ +INP+ D ++P K L G GVAF LM AL L + L LL+ Sbjct: 180 LPDADCVINPHRLDSSYPFKDLCGAGVAFKLMQALYMKLEGDFEY---------LFSLLE 230 Query: 228 LVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFAL 287 VA+GTV D+V L NRI +G+ R+ A + + IKALLE A +++ LGF L Sbjct: 231 YVAMGTVCDIVSLTDENRIFVIEGLKRLNATE-KYAIKALLEEAGWR-KEINEYTLGFIL 288 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 GP +NA GRL + + LL+ ++I + ANEL LN RK + + + + + E Sbjct: 289 GPLMNATGRLSTAKLAIELLMEEDIDKIHEYANELVNLNNKRKSLTEEGINKCIKIAEDK 348 Query: 348 ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAP-AGDGTLKGSGRSIQGL 406 +D + +Y P + + GI+A RIKE+++RP I + +G LKGSGRSI+ Sbjct: 349 SYDKDD---VIVIYEPSIDESICGIVAGRIKEKYYRPTIILTNSSKEGVLKGSGRSIETY 405 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 +M DA+ + + FGGH MA GLS++ D F+ + L L+ + Sbjct: 406 NMHDAIVP----FDHKLESFGGHPMACGLSIKVDILDEFRIFLNK--NSNLSKKDLEEVI 459 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVG 525 D + + +++E A+ L P+G+ P P+F + ++G+ + ++ Sbjct: 460 NIDTQIKLSNLSLEFAESLESLSPFGKDNPRPIFANKGVDIADIAMIGKDKKTMRMKLFQ 519 Query: 526 GGPLLDGIAFNVDTALWPDN-------GVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 G + I FN + ++ + Y D+NEFRGNR+LQI + +I Sbjct: 520 NGNYYNAIKFNALDDYEYLSLKFDGKIKGNKIDIVYYPDVNEFRGNRTLQIKLIDIR 576 >UniRef50_B0P091 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B0P091_9CLOT Length = 576 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 177/594 (29%), Positives = 297/594 (50%), Gaps = 38/594 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSG 56 M+Q +++ + P++ RL +R V +++++ + + + G Sbjct: 2 MEQWYLYKKKANFNQIGEKFNIDPVIARLIRNRDVVGDEQIQQYLYGELSDISDPFLMKG 61 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 V++ VEIL +EG I ++ D+D DG S + A+ LG ID+ +P+R +DGYG Sbjct: 62 VKEGVEILKQKVQEGKTIRIISDYDVDGVVSNYILWKAIHDLG-GKIDFQIPDRMKDGYG 120 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG----------D 166 ++ ++++A I+T DNGI++ V + + G+ +I+TDHH + Sbjct: 121 INENIIEKAVEDQIDTILTCDNGIAAADAVAYGKEHGLTMIITDHHDVPFDTDEAGMRKE 180 Query: 167 TLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL 226 LP A+ +INP CN+P L G GVAF M A + + L ELL Sbjct: 181 VLPPADVVINPKQEACNYPYPLLCGAGVAFQFMRAFYQAMEED---------ESQLEELL 231 Query: 227 DLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFA 286 ++A+ TV DVV L NRI +G+ RI+ + G+KALL V + +++ + LGF Sbjct: 232 SMLAIATVCDVVDLTGENRIFVKEGLRRIKDTQ-NIGLKALLNVHDLMDKQIQSYALGFI 290 Query: 287 LGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK 346 +GP +NA+GRL+ + L L ++ +A+ A EL LN RK + + EAL + Sbjct: 291 VGPCINASGRLESAEKALNLFLEEDEEKAKQTAEELKELNDLRKTMTENGVKEALGQAFE 350 Query: 347 LERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGL 406 E D L +Y PE H+ + GI+A RIK+R + P A +G +KGSGRSI+G Sbjct: 351 YEAKGD---KVLVLYLPECHESIAGIIAGRIKDRLNHPAFVLTDAKEG-IKGSGRSIEGY 406 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 M + + ++ ++ KFGGH MAAG SLE++K + F+++ E L+ +V Sbjct: 407 SMFEEMMKVKEVF----TKFGGHPMAAGCSLEKEKLQEFRKKINENC--TLEKKDFAKKV 460 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVG 525 D + +TM++ L P+G+ +PLF ++ + + G+ + + Sbjct: 461 QIDIDMPVDYITMDLIHQLSVLEPFGKENKKPLFAHRKLKVERVNVFGKNKNVIKLALKS 520 Query: 526 G-GPLLDGIAFNVDTALWP-DNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 G +DG+ F + + + Y INE++G +SLQI I N + + Sbjct: 521 SQGTRIDGMIFEDEDEFREKMGTSKYITCTYYPVINEYQGYKSLQINIQNYFFV 574 >UniRef50_A9KLD3 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Clostridium RepID=A9KLD3_CLOPH Length = 592 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 179/606 (29%), Positives = 298/606 (49%), Gaps = 55/606 (9%) Query: 1 MKQQIQLR-RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 MK++ L +R E + P+L R+ +RG+ E++R + M + Sbjct: 1 MKEKWMLEAKRADFEALANRLAISPVLARIIVNRGLSEEDEMQRYLSCDLTEMYSGLMMK 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 G+E+A ++ A E I + DFD DG S A++ +G + P+R +GY Sbjct: 61 GMEQARNLIITAVEENQLIAIGTDFDNDGILSGHSLSTALKRIG-GRVVVYAPDRISEGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT-------- 167 GL+ +V +A+ G++LI+T DNGI+ +++A+ LG+ V+VTDHH Sbjct: 120 GLNRRIVLEAYEAGSRLIITCDNGIAVFDAIDYAKELGMTVVVTDHHEVAFEEDENGSRT 179 Query: 168 --LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAEL 225 LP A+ ++NP C +P K L G GV + L+ L + ++ L +L Sbjct: 180 FLLPNADVVVNPKQEGCPYPFKGLCGAGVVYKLIELLYEYY---------SVPKEELYDL 230 Query: 226 LDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGF 285 L+ +A+ TVADV+ L + NR++ G+ + K GI+AL+E + ++++A +GF Sbjct: 231 LEFIAIATVADVMDLVSENRLIVKHGLKLLSQSK-NLGIRALIEECGLEQKRISAYHIGF 289 Query: 286 ALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCE 345 +GP NAAGRLD ++V + LL EA+ LA L LN +RK++ +A+ E Sbjct: 290 VIGPCFNAAGRLDTVAVALDLLDAKTTEEAKQLAVSLKKLNDSRKDMTLQGVEQAIERIE 349 Query: 346 KLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQG 405 + D L + + H+ +VGI+A R++ER+++P + F G +KGSGRSI+ Sbjct: 350 TSDLIHD---KVLVVKLRDTHESLVGIIAGRLRERYNKPALVFVDVEQG-VKGSGRSIES 405 Query: 406 LHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGE 465 +M + L + L + KFGGH MAAGLSL+ + + + R + L L Sbjct: 406 YNMFEELLKCKDL----LTKFGGHPMAAGLSLKAENLETLRARLNQ--NTTLSEEDLIPI 459 Query: 466 VVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVE-P 523 V D PL + + L P+G+ +P+F HF++ Q R++G+ + + Sbjct: 460 VRIDIPLPIGYLNEAFLEELEKLEPFGKGNIKPVFAEQHFKIRQARILGKNQNVLKLNII 519 Query: 524 VGGGPLLDGIAFNVDTALWPDNGVR---------------EVQLAYK--LDINEFRGNRS 566 G +D + F T + EV LA+ +NE+ GNR+ Sbjct: 520 NSEGFAMDALYFGDITEFNEFAEMEYGKEEVRKMYLGQYNEVDLAFTYYPTLNEYMGNRT 579 Query: 567 LQIIID 572 +Q+II Sbjct: 580 VQVIIQ 585 >UniRef50_B7AQW7 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AQW7_9BACE Length = 577 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 175/595 (29%), Positives = 294/595 (49%), Gaps = 39/595 (6%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRS----AQELERSVKGMLPWQQLSG 56 M ++ + + ++ R+ +R V + L ++ M + G Sbjct: 1 MSIWKVYAKKADFKAIGARFGINQVIARIIRNRDVTEDSQYEEYLYGGLESMHDPVLMKG 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + +AV ++ NA +G RI ++GD+D DG S + + G ++ DY+VP+R DGYG Sbjct: 61 ISEAVAVIKNAIADGKRIRIIGDYDIDGVCSICILHKGLIMAG-ADADYVVPDRITDGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT--------- 167 ++ ++ A A G +I+T DNGI+++ + +A+ GI +IVTDHH Sbjct: 120 INENLIRNAIADGIDMIITCDNGIAAYDAIAYAKENGITIIVTDHHDVPFRENADGTREY 179 Query: 168 -LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL 226 +P A+ +++P DC +P K L G VA+ ++ L F L LL Sbjct: 180 IIPPADVVVDPKQSDCGYPFKELCGALVAWKMIQHLLGQKPKDSEF---------LMYLL 230 Query: 227 DLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFA 286 +L A+ TV D+V L NR + QG+ I AG G+K L++V A +GF Sbjct: 231 ELGAIATVGDIVSLQGENRTIVKQGLRHIHAGTRNVGLKTLMDVCGVAEADFNAYHIGFV 290 Query: 287 LGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK 346 +GP LNA+GRLD + LL D+ +A+ LA EL LN RK++ + A E+ Sbjct: 291 VGPCLNASGRLDSAVKAIRLLETDDEKQAQALAAELKLLNDERKDMTERGVENACNTVER 350 Query: 347 LERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA--GDGTLKGSGRSIQ 404 + +P + ++ H+ V GI+A R++E+++RP I F + G KGSGRSI+ Sbjct: 351 --EYGNNIPQIIVVHLDNCHESVAGIIAGRVREKYYRPCIIFTDSIGEHGIYKGSGRSIE 408 Query: 405 GLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQG 464 M + R M+ KFGGH MAAG+S+ ++F+ F++ + + L Sbjct: 409 PYDMFAGVNRFRD----MLEKFGGHHMAAGMSIRSERFEEFRECLVNSMD--MSDEELTP 462 Query: 465 EVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERH--LKVMV 521 D P+ +T EV + L+ P+G+ P+P+F + ++++ ++G+ LK+++ Sbjct: 463 VTWIDVPMPLDYVTEEVTEQLQLLEPFGKDNPKPVFADKNLTVVRKNIIGKNRNVLKMIL 522 Query: 522 EPVGGGPLLDGIAFNVD-TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + V G L+ + F+V + + Y DIN F GN +LQ+II I Sbjct: 523 QTV-NGRRLEAVKFHVTQEEADNMKTGDIISIVYYPDINTFNGNSTLQMIISEIK 576 >UniRef50_Q7NPL4 Single-strand-DNA-specific exonuclease n=1 Tax=Gloeobacter violaceus RepID=Q7NPL4_GLOVI Length = 773 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 175/585 (29%), Positives = 288/585 (49%), Gaps = 31/585 (5%) Query: 2 KQQIQLRRREVDET--ADLPAELPPLLRRLYASRGVRSAQELERSVKG--MLPW---QQL 54 KQ+ ++ + + + L PL+ ++ +RG+ + + E + + + Sbjct: 11 KQRWRIAQEDPVQARQLAEAFGLSPLIAQVLINRGLTTCELAEHFLAPESWVLPSAGEAF 70 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 + +A+++L A GT I + GD+D DG TSTAL + A+RSLG +I+Y +P+R ++G Sbjct: 71 DQLPRALDLLAQAIESGTAIAICGDYDCDGMTSTALLLRAVRSLG-GHIEYAIPSRLQEG 129 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG++ +V+ + RG LI+TVDNGI ++A + A LG+ VI+TDHH + LP A+AI Sbjct: 130 YGINLRIVEAFYERGIGLILTVDNGICAYAPIARAVELGMGVIITDHHDLPERLPPADAI 189 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NP + P +LAGVGVA+ L L L G D LL+L LGTV Sbjct: 190 LNPKMIPRTSPYAALAGVGVAYVLAGELARRLGRTGLADC----------LLELFTLGTV 239 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ-KLAASDLGFALGPRLNA 293 AD+ PL NR G+++I G G++ALL + + L +GFALGPR+NA Sbjct: 240 ADLAPLVGVNRAWVLSGLAKIP-GSSNTGVQALLAASGLAGRSDLKPEAIGFALGPRINA 298 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 GR+ D + LL D+ A A E + NQ R+ + ++ EA + E + Sbjct: 299 VGRIGDPVTVIELLTTDDPAVAAERAAECELANQHRQALCAQIEAEAARMLEVEQAGGLD 358 Query: 354 L--PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 L + + WH GV+GI+ASR+K+R PV A G+ +GS R H+ +A Sbjct: 359 LGCERVIVLAREGWHHGVIGIVASRLKDRHGAPVFIAAIEGE-HARGSARGTPEFHVYEA 417 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L+ L + FGGH MA G SL F++R + L P + V D Sbjct: 418 LKDSAEL----LTGFGGHPMAGGFSLLAANLPAFRERLVQFARARLAPEQVAPLVEVDAQ 473 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLL 530 + A + + + P G EP+F R+++Q+ +G+ + + G Sbjct: 474 VQLARVDRRLLGEIDRLQPCGLGNAEPVFWVAGARVVEQKAMGKTRTHLNLTVSDGTAER 533 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + + L V +A+++ N ++G+ +++ + + Sbjct: 534 RAVGWRMAEWLPLPPF---VDIAFQVKENNWQGHSKVELELVGLR 575 >UniRef50_B2ULA8 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2ULA8_AKKM8 Length = 579 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 176/555 (31%), Positives = 261/555 (47%), Gaps = 36/555 (6%) Query: 34 GVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVL 93 G+ + L+ + + + + AV+ ++ A EG + + GD+D DG TS AL Sbjct: 43 GMETELFLDPRLSHLSDPFLMGEMRAAVDRIFRAVDEGETVCIYGDYDVDGVTSVALLRA 102 Query: 94 AMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH---ARGAQLIVTVDNGISSHAGVEHAR 150 + + Y +P R +GYGLS + + A L++TVD G SS V+ Sbjct: 103 ILMAYDLDP-QYFIPVRSREGYGLSEAGIKRCLCECADPPSLLITVDCGTSSVKEVDMLN 161 Query: 151 SLGIPVIVTDHHLPGD-TLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQ 209 SLGI VI+ DHH G P A A++N + + N P L GV F L AL Sbjct: 162 SLGIDVIILDHHEAGPLGRPDAAAVVNAKIEE-NSPYTYLCSAGVVFKLAHALLKE---- 216 Query: 210 GWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLE 269 R + +L LDLVA+ TVAD+VPL A NRIL G+ R+ + G+K L E Sbjct: 217 -----RKLKTFDLKLYLDLVAVATVADIVPLVAENRILVRHGLGRLAHSR-HTGLKTLTE 270 Query: 270 VANRDAQK-------LAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 322 +A L A+ +GF +GPR+NAAGR+D + LLL + A LA L Sbjct: 271 IAGIRPSDSVNHAGFLNAAHVGFRIGPRINAAGRMDSPMDALELLLTMDARRAVQLAQML 330 Query: 323 DALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFH 382 D+ N+ R+E E+ ++ +A+ + + + WH GVVGI+AS++ R+H Sbjct: 331 DSHNRKRQEEEEAIRTDAVEMLHN--SFDPERDNVIVLGSRAWHPGVVGIVASQLMRRYH 388 Query: 383 RPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKF 442 +P A G KGSGRSI G+ + A+ ++ GGH MAAGL +EE + Sbjct: 389 KPTFVIAFDESGVGKGSGRSIPGVSLVQAIHHCADT----LVSGGGHDMAAGLVIEESRM 444 Query: 443 KLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG 502 F++ F V+E + D +S +T+++ P+G P+PLF Sbjct: 445 DDFRRAFNRYVSETTTEEQRSPVLNIDMEVSFQALTLDLLDSYEKLEPFGNSNPQPLFMS 504 Query: 503 H--FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINE 560 F + VG HLK+ + G D I FN P+ +A+ +D N Sbjct: 505 SDVFPTEPPKRVGTNHLKLFMR--QGIVERDAIFFNGAERELPNP---PWDIAFTIDRNV 559 Query: 561 FRGNRSLQIIIDNIW 575 +RG SL I I I Sbjct: 560 YRGRASLSISIQEIR 574 >UniRef50_C9RBA5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Ammonifex degensii KC4 RepID=C9RBA5_AMMDK Length = 865 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 176/584 (30%), Positives = 271/584 (46%), Gaps = 42/584 (7%) Query: 1 MKQQIQLRRREVDETA-DLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 M I ++ + + P+L ++ +RGV++ +E + + G + P ++ Sbjct: 1 MSSWIPFPQQPLACALWARELGIDPVLAQILLNRGVKTLEEADFFLNGRLAQLPPPGKMK 60 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 +E+AV+ + +A +I+V GD+DADG T+T L V ++ LG + Y +P R DGY Sbjct: 61 DLERAVKRIRSAVANQEKILVWGDYDADGITATVLLVSVLKHLGAEEVTYHLPTRA-DGY 119 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL + + A +G L++TVD G+ + + +G+ +I+TDHH P D LP A A+I Sbjct: 120 GLKGDFLRAAKEQGVSLVLTVDCGVKASEEARLCKLMGLDLIITDHHEPSDELPEAWAVI 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP DC +P K LAGVGVAF L AL E LD+VALGTVA Sbjct: 180 NPRRPDCPYPFKELAGVGVAFKLATALSRE---------------AAEEWLDVVALGTVA 224 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 DV+PL NR+L +G+ + + RPG+ LL A + L F L PRLNAAG Sbjct: 225 DVMPLVGENRVLVREGLKLFNSSRLRPGLAGLLSAAGASL-PVTVRTLSFVLAPRLNAAG 283 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ D V LL EA + +L+ LN+ R+ E EA L +R+R+ Sbjct: 284 RIGDPDVAARCLLAV-EEEAEQWSRKLEELNRERQRWENACLKEADLLA---KRAREASS 339 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 L + +W G+ G++A R+ + P G+ +GSGR+ + ++ AL Sbjct: 340 RVLVVEASDWPVGLTGLIAQRLHSLYQLPAFVIVWEGE-VGRGSGRADESFNVYQALSHA 398 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 +L +GGHA A G +L + F F E D L Sbjct: 399 SP----YLLDYGGHAGAGGFTLTRESFPHFVASLEEYARNLPPDRTYHACRYFDAVLELE 454 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLV---GERHLKVMVEPVGGGPLLDG 532 ++T + + L P+G P P + + E HL++ + G L+G Sbjct: 455 KLTPRLMEELGRLEPFGPGNPPPRLVAQGVEVVEVRRVGKEEEHLRLRLR--QGRACLEG 512 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 +AF P R V L ++ INE G ++ I + WP Sbjct: 513 VAFGRGGEELP----RLVDLVFEPSINELTGQ--PELKILDWWP 550 >UniRef50_UPI00017452AB single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017452AB Length = 620 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 181/585 (30%), Positives = 280/585 (47%), Gaps = 37/585 (6%) Query: 4 QIQLRRREVDETADLP-----AELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 + L + + A L A LPPLL RL A RG+ + + + ++ + L Sbjct: 57 RWILEPVDPEVLASLRSTTLGATLPPLLVRLLALRGLATEAQAKGFLQPRLAELGDPFIL 116 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 + +AV+ + A ++++ GD+D DG TS L L +++ G + +P R E+G Sbjct: 117 PQMRQAVDRILLAVDRQEQVVLYGDYDVDGVTSLTLMTLVLQAYGLQPHAF-LPLRMEEG 175 Query: 115 YGLSPEVVDQAHAR--GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 YGLS + + + L++ +D G S A + + G+ I+ DHH P LP Sbjct: 176 YGLSHDGLLRCFEEHGKPALLIAMDCGTVSVAETDWLQQEGVDCIIVDHHEPAHRLPTCV 235 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A++NP L VG+ F L AL R + +L E LDLVA+G Sbjct: 236 ALVNPKLEAHT-GLTYFCTVGLVFKLTHALLK---------TRRLDTFDLKEHLDLVAMG 285 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLN 292 TVAD+VPL NR L +G+ ++ A R G+ AL +VA D + A +G+ LGPRLN Sbjct: 286 TVADLVPLKDENRALVRKGLEKL-ATTRRVGLCALKQVAGVDG-FIQAHHIGYRLGPRLN 343 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 AAGRLD + LLLC++ AR A+ LDA N+ R+++E Q EAL + Sbjct: 344 AAGRLDTAQTALDLLLCEDPQFARECADLLDAHNRERQDVESVAQKEALAMMAA--DPTL 401 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDAL 412 + + WHQGVVGI+ASR+ HRP + A DG KGSGRS+ G+ + AL Sbjct: 402 GEAACIVLGSRSWHQGVVGIVASRLMRDHHRPTLLLAFGQDGHGKGSGRSVTGISLVAAL 461 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 ++ L +LK GGH MA G+SL+E+ F+ V + L + + Sbjct: 462 DQCRHL----LLKGGGHPMAVGVSLKEENLADFRAAMSAAVESQITADELTPRLHLSAEI 517 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFR--LLQQRLVGERHLKVMVEPVGGGPLL 530 S +++T + P+G EP+F +L +++ E+H K+ + GG Sbjct: 518 SLSDLTPRFLEQYTLLEPFGMGNHEPIFLCRGMEPILPGQVLKEKHWKLTLR--QGGQSR 575 Query: 531 DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + FN D +A K+ +RG + Q++I + Sbjct: 576 PAMWFNAP---LNDIPPPPWDVALKVQRQVWRGQETWQLMISEVR 617 >UniRef50_A9BF16 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BF16_PETMO Length = 1035 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 153/595 (25%), Positives = 287/595 (48%), Gaps = 40/595 (6%) Query: 1 MKQQIQL----------RRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM-- 48 M+ + ++ ++ +V +T + L +L SR + + +E ++ + + Sbjct: 1 MESKWKVFWDPKASYYQQKDKVAKTLSSALGISDFLAKLLVSRNIETPEEGDKFLNHLEL 60 Query: 49 --LPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYL 106 + + KAVEIL + ++ + GD+D DG T+T++ L ++ +G ++ Sbjct: 61 ESFDPYLMKDMSKAVEILKQIKEKKEKVAIFGDYDVDGVTATSVLYLGLKKIGY-DVTSY 119 Query: 107 VPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGD 166 +P+R E+GY L+ + +++ ++ I+TVD G +S +E+A+SLG+ VIVTDHHLP + Sbjct: 120 IPSRIEEGYSLNVKAIEELKSKNYNNIITVDCGTTSIQEIEYAKSLGMKVIVTDHHLPQE 179 Query: 167 TLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL 226 LP A+AI+NP D +P K LAGVGV F L+ AL + + E + Sbjct: 180 NLPKADAILNPKREDDKYPFKDLAGVGVTFKLLQALYKSYDNSL----------DPFEYI 229 Query: 227 DLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFA 286 DLVA+GT+AD+V + + NR L G+++++ + G+K LL+ ++ + + F Sbjct: 230 DLVAVGTIADIVSITSENRYLVKIGLNKLKTNPTK-GLKYLLDELKIVDSEINSRTITFK 288 Query: 287 LGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK 346 + P++NAAGR+ D LL+ + + + +EL LN R+ E+ + + +L Sbjct: 289 VAPKINAAGRMSDARSAFNLLIEKDEEKLKKAVSELLRLNSKRQSTEKEIYL--YSLSLL 346 Query: 347 LERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGL 406 L + +WH GV+GI+AS++ +F++PV+ + + KGSGRS QG+ Sbjct: 347 DLYPEYKKDPVLVLSGEDWHMGVLGIVASKLSNQFNKPVLMISKNQE-MGKGSGRSPQGI 405 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 + + L +++ G+ +FGGH AAG S+ + ++ E+ E L ++ Sbjct: 406 DLMELLLKVNER--GIFEEFGGHKFAAGFSILSKNIEALRKEINEVYKELYGDKKLTSQI 463 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVG 525 D + TM + + P+G EP+F + +L R Sbjct: 464 DVDMEIEGIWETM--FEDINKLEPFGYGNQEPVFLIKNAKLENIRFFRNGSQSFSGTLNK 521 Query: 526 GGPLLDGIAFNVDTALWPDNGVRE----VQLAYKLDI-NEFR-GNRSLQIIIDNI 574 ++D + +++ L + L I N + N ++ + ++ Sbjct: 522 DSLIIDILGYDLGYRLSELTENSKKDLFTDLVGTFRIENSYNLKNSYVKFYLQDL 576 >UniRef50_C7MMI3 Single-stranded-DNA-specific exonuclease RecJ n=4 Tax=Coriobacteriaceae RepID=C7MMI3_CRYCD Length = 1134 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 167/578 (28%), Positives = 278/578 (48%), Gaps = 28/578 (4%) Query: 5 IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLSGVEK 59 I E LP + +RG+ S QE ++ + G+++ Sbjct: 24 IHEADPAATEVLCKTLGLPRFIAATLVARGISSPQEAGEFLRPSLARDWGNPYCIPGMDE 83 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 V L A R G RI+V GDFD DG +STA+ +R LG + +P R ++GYG++ Sbjct: 84 VVGGLEAAVRSGKRIMVFGDFDLDGISSTAVLTRGLRELGGE-VVPFIPRRQDEGYGITE 142 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 +++ L+VTVD GI+ V ++ G+ V +TDHH P D +P + +P + Sbjct: 143 AAIERLMKDEPDLLVTVDCGIACRNEVRLLKNRGVDVFITDHHEPADLVPEEVPVCDPKI 202 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 D + LAGVGVA L+ AL + E DL LGT+AD++P Sbjct: 203 -DPDCSESILAGVGVALKLIQALGARFGQPHLW----------REYTDLATLGTIADLMP 251 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 + +NR L G++ + RP I ALL A + ++++ L F++ PRLNAAGR+ D Sbjct: 252 MQQDNRALVADGVAHMNESP-RPCIAALLHSAGVADKPVSSTSLSFSVIPRLNAAGRMGD 310 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 + + LLL D+ A+ +A +L+A+N R+ IE + A +++ + + L Sbjct: 311 AMLALNLLLEDDAHRAQDIAADLEAVNSQRRAIEAELAEIATLQAQEIYQGQ----RALI 366 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 + WH+GV GI+ASR+ + P I FA +G +GSGRS+ +++ A+E Sbjct: 367 VAGEGWHEGVKGIVASRLARSYGVPTILFAIDEEGIARGSGRSVGSVNLFKAVESCSD-- 424 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 M+++FGGH A G++L F +R + LD + + D ++ E+T+ Sbjct: 425 --MLIRFGGHEAAVGVTLSAADLPAFTKRLCAFMDG-LDKNCFHPRIDIDACVNLDELTV 481 Query: 480 EVAQLLRDAGPWGQMFPEPL-FDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD 538 E + L P+GQ +P + L + R VG G + GI F+ Sbjct: 482 ENVEALEQLAPFGQGNRQPTYLAQNVMLTRSRAVGADKNHFSTVLTDGAHTVSGIMFHCA 541 Query: 539 TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + V +++ ++E+RG RS++ ++ +I+P Sbjct: 542 YIDRLMHCDSVVNAGFEVQVDEWRGRRSVKAMLSSIYP 579 >UniRef50_C0EBF3 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBF3_9CLOT Length = 678 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 169/580 (29%), Positives = 285/580 (49%), Gaps = 27/580 (4%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV--KGMLPWQQLSGVEK 59 K Q + E + + + L + A+RG++ ++ + + L ++K Sbjct: 5 KWQYRAGAEERIQEIEETFGVSRFLAGILATRGLQD-DQINDLLGETELESPFALKDMDK 63 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 AVE + A G +I V GD+D DG TSTA+ + S+G + + + +P R + GYGL+ Sbjct: 64 AVERINRAVEAGEKIAVYGDYDCDGITSTAVLCTYLSSIG-AEVTHYIPERDDGGYGLNR 122 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 +D G QL++TVDNGI++ ++A LG+ +I+TDHH GDTLP A A+I+P Sbjct: 123 PALDHLKGEGVQLLITVDNGITAVEEADYAAQLGMELIITDHHRVGDTLPQAVAVIDPQR 182 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 DC K LAGVGVAF L+ A+ E + DLVA+GTV DVVP Sbjct: 183 EDCPSRYKFLAGVGVAFKLVAAM-----------EDGDYESTFSYFGDLVAIGTVGDVVP 231 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 L NR + +G+ +I + G+ A+ + A + + + F + PR+NAAGR Sbjct: 232 LTGENRTIVKRGLKQIEFSE-NIGLGAIFDKAKIAKTNVTSQYIAFGIVPRINAAGRFGM 290 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 + LL+C++ + + +A EL+ LN R+EIEQ +Q + R L Sbjct: 291 ANKVFDLLMCEDEKQCKKMATELNQLNMQRQEIEQEIQQQIREEL--TANPRKLYNRVLV 348 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 W G++GI+++R+ E + RP + A G +GS RS+ G + +AL+ +L Sbjct: 349 FAREGWPHGIIGIVSARVTETYGRPSVLLAIEEGGVARGSARSVDGFSIYEALDANRSLC 408 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 K GGH+ AAGL+++ + +Q + E + + D ++ +++T+ Sbjct: 409 E----KMGGHSAAAGLTIKAENIPALEQGLNDYAREHC-ERMPEPTYQIDFTVNASDLTV 463 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRL--VGERHLKVMVEPVGGGPLLDGIAFNV 537 + L P+G P PLF L + G +H+K+ + G ++ I F V Sbjct: 464 QNVNSLAMLEPFGAQSPSPLFLIKNARLDAVVPLSGGKHIKLKLITETG--IIQAIYFGV 521 Query: 538 DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 + + + L LDI+ F G +++ + + ++ P+ Sbjct: 522 QRSCFYYQPGAVLNLLVALDISFFNGVQTVSVKVKDVRPV 561 >UniRef50_UPI00016C4908 single-strand DNA-specific exonuclease n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4908 Length = 592 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 183/593 (30%), Positives = 283/593 (47%), Gaps = 30/593 (5%) Query: 2 KQQIQLRRREVDET--ADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 ++Q L + T A + ++ +L +RGVR A R + + P L Sbjct: 5 EKQWHLLPADSSATNRLAGSARVSSVVAQLLLNRGVRDAAAARRFLDSPLGALHPPLALP 64 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 GV++A E + A RI V GD+D DG T T++ + + LG +++ + VP R +GY Sbjct: 65 GVKEAAERVVRAVTARRRICVYGDYDVDGVTGTSILLRVLGKLG-ADVQFHVPLRLSEGY 123 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP-----GDTLPA 170 GL+ E + + + G QL+++VD GI+S A + AR LG+ +IVTDHH G LP Sbjct: 124 GLNSERLHELYRNGVQLVISVDCGIASIAEAQTARDLGLELIVTDHHEMKMGLDGPLLPV 183 Query: 171 AEAIINPN-LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLV 229 A+ +++P +P L+G GVAF L A+ R G L + + L Sbjct: 184 ADVLVHPRLRAAEPYPFGDLSGAGVAFKLAWAVAQ--RASGSEKVSADLREVLLDSVGLA 241 Query: 230 ALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQK-LAASDLGFALG 288 ALG VADVVPL NR+ G+ RI+A G+KALL+ + + L A D+GF L Sbjct: 242 ALGLVADVVPLRDENRVFVRHGLERIKANPS-VGLKALLDASGVKPDQVLTAEDVGFKLA 300 Query: 289 PRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLE 348 PRLNAAGRL S V LL + +AR LA +L+A N R+ E+ A L E+ Sbjct: 301 PRLNAAGRLGCASFAVELLTTQSPTKARQLAEQLEAQNGDRQARERKYTQAAKELVEEQF 360 Query: 349 RSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTL-KGSGRSIQGLH 407 + + PEWH GVVGI+ASR+ + F +P + A + + GSGRS+ G Sbjct: 361 ADD----PAIVVGSPEWHPGVVGIVASRLVDYFGKPALVIAMQPNEAVSTGSGRSVTGFA 416 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 + AL D + G A AAGL + D+ + RF V + Sbjct: 417 LHTALVACDDILEGHGGH----AAAAGLKVRPDRIPALRDRFNAYVRSHYPGGAPAQTLT 472 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHL--KVMVEPV 524 D + + +T + L P+G P P F ++ RL+G + + Sbjct: 473 LDAEVPLSALTFGLINDLDKLEPYGAGNPRPKFLAAGLKVEAARLIGTGEIQRHMDFRVR 532 Query: 525 GGGPLLDGIAFNVDTALWPD-NGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 G + +A+ + + + + LA+ INE++G+R L++ + ++ P Sbjct: 533 QGDTTIRCVAWGMADRMEELMSAGGDCCLAFTPKINEWKGSRKLELQVIDLKP 585 >UniRef50_UPI0000E87D07 exodeoxyribonuclease VII, single-stranded DNA-specific exonuclease n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87D07 Length = 559 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 229/564 (40%), Positives = 338/564 (59%), Gaps = 15/564 (2%) Query: 11 EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFRE 70 + + + + L + A+R + S E+ +K ++P +L +E L+ ++ Sbjct: 10 QPLKKLLIDDGVDQHLASILAARNIGSIAEIHYDLKNLIPPNRLYSLEATAVFLHQCIKK 69 Query: 71 GTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGA 130 +I+++GD+DADGAT+TA++VL +R +N+D+LVPNRFE GYGL+ +V +A + Sbjct: 70 QKKILIIGDYDADGATATAVAVLGLRKF-LANVDFLVPNRFEYGYGLTIGIVKEALKKTP 128 Query: 131 QLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLA 190 +I+TVDNGI+S GV+ AR I VIVTDHHLP D +P A I+NPN ++C+F SKSL Sbjct: 129 DVIITVDNGIASIEGVQFARDNNIDVIVTDHHLPADQIPNANFIVNPNQKNCSFSSKSLC 188 Query: 191 GVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQ 250 GVGV FYL++ALR R+ F E I PNL +L+DLV LGTVAD+VPLD NNRIL Sbjct: 189 GVGVVFYLLMALRAVFREANEFIE--IQEPNLFDLIDLVCLGTVADLVPLDFNNRILVHH 246 Query: 251 GMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCD 310 GM +I+ C GI+A+ +++N+ L SD+ F++ P+LNAAGRLDDMS+G+ LL Sbjct: 247 GMKKIKRNSCNFGIQAIAKLSNKSLSHLKTSDISFSIAPKLNAAGRLDDMSIGIKCLLSQ 306 Query: 311 NIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVV 370 ++ EA V A EL LN RKEIE M+ +AL + + ++ WHQGV+ Sbjct: 307 SLQEAEVFAIELIKLNSQRKEIEVEMKEDALKHI----IFDEEKNYSICLFDESWHQGVI 362 Query: 371 GILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHA 430 GILASRIKE++ RP I FA +G LKGSGRSI G H+RDAL+ + + +++ FGGHA Sbjct: 363 GILASRIKEKYFRPTIIFAKDANGILKGSGRSIPGFHLRDALDFISKKHSDLIITFGGHA 422 Query: 431 MAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGP 490 MA+GL+++E F+LF + F + L V D + T + + Sbjct: 423 MASGLTIDEVNFELFVKVFNAHCANVMSKDDLNLVVDVDESILTMNATFDDIFKID-MSI 481 Query: 491 WGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREV 550 WGQ F P F F L+ Q+ + +H K + G + + I FN L ++ Sbjct: 482 WGQGFSPPSFTDEFTLVSQKTLMNKHTKCQLSL--NGKVYEAIFFNFSENL-----PDKI 534 Query: 551 QLAYKLDINEFRGNRSLQIIIDNI 574 + Y ++ NEFRG++ +Q+I+ ++ Sbjct: 535 KAIYSIEANEFRGSKKIQLILRDL 558 >UniRef50_Q8D2B5 RecJ protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D2B5_WIGBR Length = 580 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 249/559 (44%), Positives = 383/559 (68%), Gaps = 1/559 (0%) Query: 1 MKQQIQLRRREVDETADLP-AELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEK 59 M I++ R ++ ++ + +P +L+++Y++RG++ +E++ K ++ ++ L G++K Sbjct: 1 MNYDIKIHRISKIKSPEIENSNIPIILKKIYSNRGIKQLKEIDLKTKNLISYKNLLGIKK 60 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 A ++L A + +I++VGDFD DGA+ TAL+ L + LG +++++PNRF++GYGL+ Sbjct: 61 ATDVLKIALIKRKKIVIVGDFDVDGASGTALAFLILMKLGAKKVEFIIPNRFKNGYGLTK 120 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 E+V+ + ++IVTVDNGISSH GV AR G+ +I++DHH+P LP A AIINPNL Sbjct: 121 EIVEFIEKKEGEVIVTVDNGISSHEGVNLARKKGMKIIISDHHIPDKILPKAHAIINPNL 180 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 ++C F SKSL+GVGV FYLM++LR+ L+ WF + I IPNLAE LDLVALGT++D+ P Sbjct: 181 KNCKFKSKSLSGVGVIFYLMISLRSELKKNSWFKDNKIIIPNLAEFLDLVALGTISDLSP 240 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 LD NNRIL QGM+RIR G CR GIKAL+E++N D L+ +D+ + L P++N AGRL D Sbjct: 241 LDLNNRILVHQGMNRIRNGNCRAGIKALIEISNLDISFLSTNDISYILSPKINVAGRLKD 300 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 M +GV LLL ++I +AR+LA EL+ LN+ R+ I + M+ +A +C K+++ +T P G Sbjct: 301 MRIGVKLLLTNDIKKARLLAKELNFLNKKRQIIGKKMEKQAFFICTKIQKKTNTTPSGFV 360 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 +YH +WH+G++GI+ASRIKERF PVI FA + + LKGS RSI+G+++R L+ L+ +Y Sbjct: 361 LYHQDWHEGILGIIASRIKERFQVPVIIFAKSKNNLLKGSIRSIEGINIRLILKELNNMY 420 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 P +++ FGGH++AA L +E K F++ F + + + SDG L ++++ Sbjct: 421 PDLIISFGGHSVAAALVIESSKLIYFKKIFLNFIENKKINVSSKRIISSDGELFYDDISI 480 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT 539 + A LL + PWG F P+FDG FR+ Q L+ + HLK+ ++ + GG +LDGI FNVD Sbjct: 481 KTATLLLYSSPWGNKFNYPIFDGKFRIFDQLLINKIHLKIKIQHILGGNILDGICFNVDL 540 Query: 540 ALWPDNGVREVQLAYKLDI 558 WP+ + V+LAY L + Sbjct: 541 KSWPNKKINFVKLAYTLRV 559 >UniRef50_A3DBX0 Single-stranded-DNA-specific exonuclease RecJ n=4 Tax=Clostridium thermocellum RepID=A3DBX0_CLOTH Length = 763 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 163/580 (28%), Positives = 292/580 (50%), Gaps = 33/580 (5%) Query: 1 MKQQIQLRRR--EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQL 54 MK ++ + + + + L+ R++ +RG ++ + + + + + Sbjct: 1 MKVRVNILNKGVSIPQEVLDACGGDELVARIFYNRGYKNPETIRQMLNPELYVPTKPDEF 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 + +AV+ + A +I V GD+D DG TST V + + S + Y VP+RF +G Sbjct: 61 PDMPRAVDRILRAADNEEKICVYGDYDVDGVTSTVTLVECL-NFFTSKVVYHVPDRFTEG 119 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG++ E+V + G LI+T D GIS+ + A+ LG+ V++TDHH D LP A+AI Sbjct: 120 YGMNEEIVRKLAQDGVSLIITCDCGISNVREITLAKELGMDVVLTDHHTVPDELPPADAI 179 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NP L + +++++G G+ ++L LAL LD++AL + Sbjct: 180 LNPKLLEEGHRARNISGCGMVYFLCLALLEK----------KGFPDRAERFLDMLALSLI 229 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 ADVV L+ NR L + + + + R G++ LLEVA R+ + D+ F + PR+NAA Sbjct: 230 ADVVSLNGENRYLLQKALPALFNTR-RIGLRQLLEVAERNGKLENEEDVAFQIAPRINAA 288 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+D + V L LC ++ +AR++A ++D+LN RK ++Q + EA+ + E ++++ Sbjct: 289 GRMDTARLPVELFLCQDLEKARIMAEKIDSLNTERKRVQQSIVDEAVEMVETRKKNK--- 345 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALE 413 L +Y WH G++GI A RI E + +P I F+ DG GS RSI+ +++ + ++ Sbjct: 346 -TILVLYKEYWHHGIIGIAAGRICELYRKPAILFSLKEDGITAVGSARSIEEVNIYELIK 404 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 G +LKFGGH+ AAGLS+ +D + F + + V +D L Sbjct: 405 ECS----GKLLKFGGHSQAAGLSIRKDDIEEFISQIEMEAENRYFIKDMVN-VNADMELG 459 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 ++ E+ ++ AGP+G+ F P F ++ + E+ +MV G + + Sbjct: 460 IEDINEELYDRIQSAGPYGEGFEAPCFCIRNVIVLSDRMTEKKHHIMVLEDQKGNRIPAV 519 Query: 534 -AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIID 572 F D + R + ++ N + + +Q+ ++ Sbjct: 520 KWFGEDESFE----GRCFDVTCRIGRNNYSKDAGIQLTLE 555 >UniRef50_C5RPJ0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Clostridium cellulovorans 743B RepID=C5RPJ0_CLOCL Length = 589 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 166/602 (27%), Positives = 290/602 (48%), Gaps = 59/602 (9%) Query: 13 DETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAF 68 + + + P++ +L RG+R E+E+ +KG M + ++ A I+ A Sbjct: 5 AQKLATDSFISPIIAKLLWDRGIRDKDEVEKFLKGSIDEMYDPFLMKDMDLATSIIIKAI 64 Query: 69 REGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR 128 E +I++ GD+D DG TST + A++ +G + + Y +P+R ++GYGL+ + ++ + Sbjct: 65 FEEKKIVIYGDYDVDGVTSTVIMFKALKRVG-ARVTYHIPDREKEGYGLNKKSIEVLREQ 123 Query: 129 GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG----------DTLPAAEAIINPN 178 G +I+TVDNGI++ V++A+ +G V++TDHH + LP A+AIINP Sbjct: 124 GNSVIITVDNGIAAVEEVKYAKEIGFQVVITDHHDLPFEENEKGERKEILPNADAIINPK 183 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 DCN+P K L G +AF +AL + + E L + TV DVV Sbjct: 184 RSDCNYPFKYLCGASIAFKFAVAL--------FIKRKIDYKEAYNEYLQFAGIATVCDVV 235 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 L NR++ + I K GI +L + ++++ +GF +GP +NA GRL+ Sbjct: 236 DLIDENRVILKNALKSINNSK-NIGINSLRKFTLSLDKEISVYAIGFVMGPCINATGRLE 294 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 + + V LLL + A LA EL LN+TR+++ + + E + D L Sbjct: 295 NAKMAVELLLTKELEIAENLAKELVDLNKTRQDMTTEGVEKVVKEIELGDYYND---KVL 351 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 +Y P H+ + GI+A RI+E++++P I A +G +KGS RSI+ ++ + L + L Sbjct: 352 VVYEPTIHESIAGIIAGRIREKYNKPTIILTKAVEG-VKGSARSIEEYNIYEELLKCKNL 410 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 + KFGGH MAAG+SL+E+ + ++ L + +VV D PLS ++ Sbjct: 411 ----LDKFGGHPMAAGMSLKEENIEPLRETLNGKC--ILTDEDMIPKVVIDFPLSSHKID 464 Query: 479 MEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 + + + P+G+ PLF D + L + + G + + + G +D +AF Sbjct: 465 DSIIYDIGELAPFGKGNSTPLFGDKNLLLEKAMVFGSDNGVLKLVFNVQGRRIDAVAFKK 524 Query: 538 DTALWP------------------------DNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 L + + Y + NE++GN+ +Q+ + Sbjct: 525 YLELMEIIEENWVNDNYGELLPYSTGYLINIPQDLRLDIIYTPEFNEYKGNKKIQLKVHE 584 Query: 574 IW 575 + Sbjct: 585 LR 586 >UniRef50_C0GFY2 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFY2_9FIRM Length = 788 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 185/579 (31%), Positives = 284/579 (49%), Gaps = 32/579 (5%) Query: 3 QQIQLRRREVD-ETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGV 57 + + + L L RGV + + + + +++G+ Sbjct: 6 WPWTVPEKNPAVQQLAEALGLHRLTAACLTQRGVTTTEAARLFLAGSLSDLGDPFKMAGM 65 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 KA E L A RE +++ GD+DADG TSTAL + ++ L S ++Y +P+R DGYGL Sbjct: 66 AKAAERLALAVREREPVLIYGDYDADGVTSTALLMAVLQKLEVS-VEYYIPSRLGDGYGL 124 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 V+++ RG +L VTVD GI+S A +E A+ LG+ +IVTDHH D A A++NP Sbjct: 125 HGSVLEEFAGRGGKLAVTVDCGINSFAEMELAKELGLDLIVTDHHECFDGQRNAFAVLNP 184 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 +C + ++LAGVGVA+ L AL + L + AE LDLVA+G++ADV Sbjct: 185 KQEECGYSERNLAGVGVAWNLARALHSLL---------GVPFAETAEYLDLVAVGSIADV 235 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 VPL NRIL G+ ++ RPG+ AL V N QKL+A+ + F L PRLNA GRL Sbjct: 236 VPLLGENRILVKYGLEKLSERP-RPGLAALARVGNVGEQKLSATQVAFVLAPRLNAPGRL 294 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 D + V L + +A LA+ELD N+ R+++E+ + + + Sbjct: 295 GDAAPAVET-LLADEADAEALAHELDEKNRQRQQVEKDI-----LAEARELAAAQADKPA 348 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 L ++ WH GVVGI+A R+ F +P A G GS RS+ G + DAL+ Sbjct: 349 LVLWRDTWHPGVVGIVAGRLASEFAKPSALVAVDGT-QGNGSIRSVPGCDVVDALQACTE 407 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 + +FGGH AAGL+++ + F++ F V + +V ++ L+ Sbjct: 408 ----HLARFGGHPEAAGLTVDTQCLEAFREAFCRAVATQKTKEEQRQQVAAEAVLAELS- 462 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN 536 +E+ + L P+GQ PEPLF + R VG + ++ GGP+ GI F Sbjct: 463 -LELVEELAALEPFGQGNPEPLFLVRDVEVAAARRVGNNGKHLQMKLKNGGPVYAGICFG 521 Query: 537 VDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 A +V N ++G SL + + ++ Sbjct: 522 GGEA--DIARGMQVDAVVFPTTNTWQGRTSLSLHVRDVR 558 >UniRef50_C8QX81 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX81_9DELT Length = 592 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 199/581 (34%), Positives = 300/581 (51%), Gaps = 31/581 (5%) Query: 14 ETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFR 69 ++ L LP L + RG R +E ++ + + G+ +AVE++ N+ Sbjct: 23 KSLALDLGLPEALVAVLLRRGHRDRAGIESFLRPNLADLPDPDLMLGMSRAVELIANSMG 82 Query: 70 EGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR- 128 I+V D+D DG ++ A+ + +L C ++ YL+P+R EDGYG+ ++ + A+ Sbjct: 83 SRQPIVVYADYDVDGLSAGAVLYKFLENLNCRDLYYLLPHRGEDGYGVHAHLLAELRAKL 142 Query: 129 ---GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFP 185 L++TVD GI H + AR LG VIVTDHH P DTLP A AI+NP+ C FP Sbjct: 143 GGNARPLLITVDCGIGDHQALIEARELGYTVIVTDHHRPEDTLPPAAAILNPHQAGCPFP 202 Query: 186 SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNR 245 K+LAGVGVAFYLM+ LR L QG+F ++ NL E +DLVALGTVAD+V L NR Sbjct: 203 CKNLAGVGVAFYLMMGLRRHLAGQGFFADQ--PPVNLKEYMDLVALGTVADMVALRGANR 260 Query: 246 ILTWQGMSRIRAGKCRPGIKALLEVANR--------DAQKLAASDLGFALGPRLNAAGRL 297 IL G+ ++ + RPG+ AL A + + + D+ F+L PRLNAAGR+ Sbjct: 261 ILVRAGLEVMQESR-RPGLVALAVAAGIKPPKGEGSEKRAIYPEDISFSLAPRLNAAGRV 319 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 LL+ DN EA+ LA EL+ LN+ R+++ + +A E+ + Sbjct: 320 ATPETAFRLLITDNPAEAQALAAELEELNRWRRQLSDQVYRQAKERAAASEQQK---MQV 376 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 L + WH GV+GI A+R+++ F+RPVI F L+GSGRS +GL + ++ Sbjct: 377 LVLADENWHTGVLGIAATRLQQDFNRPVILFGYESPNILRGSGRSFEGLDLLAMVDACSE 436 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 L +L +GGHA A G++L+ + FQ + E + + + D + + Sbjct: 437 L----LLGYGGHAAALGVTLDPGRLAEFQAQLNEAAGRIMAERQPEPTITVDWHFADGRI 492 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAF 535 + P+G PEPLF L Q +VG + HL+ + L GIAF Sbjct: 493 DAGLTTNYHLLEPFGPGNPEPLFQVKGPLAQAGVVGREQNHLRFRWQQKDFN--LPGIAF 550 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 N +L P N V+L + L N ++G + Q+ +I P Sbjct: 551 NYGNSLKPSNPG-PVELIFALRRNIYQGRVAWQLQAKSIKP 590 >UniRef50_Q2JN66 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Synechococcus RepID=Q2JN66_SYNJB Length = 890 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 171/536 (31%), Positives = 278/536 (51%), Gaps = 31/536 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQ-LSG 56 + + ++ + P+L ++ +RG+ S +++ ++ + P + + Sbjct: 8 RWLFHPVDKLAAQSLAEAVGISPILAQILLNRGLSSPAAVQQYLQPDPAHLPPPSRDFAD 67 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + AV++L A R I + GD+DADG TSTAL + A++ + + Y +P+R +GYG Sbjct: 68 LPLAVDLLDGAIRRQEPIAICGDYDADGMTSTALLLRALQD---APVHYRIPSRMTEGYG 124 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+ +V + H G +LI+TVDNGIS+H ++ A++LG+ VIVTDHH LP A+AI+N Sbjct: 125 LNSRMVQELHREGVRLILTVDNGISAHEPIQLAKALGLTVIVTDHHDLPPQLPPADAILN 184 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P + P + +AGVGVA+ L AL D L+L +GT+AD Sbjct: 185 PKQLPVSSPYRGMAGVGVAYLLAQALAERRGDGHLQRVA----------LELFTVGTIAD 234 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDA--QKLAASDLGFALGPRLNAA 294 + PL NR+ QG+ + + GI+ALL+V + L +GF LGPR+NA Sbjct: 235 LAPLTGVNRLWVRQGLHLLPTSQV-AGIRALLQVMGMQGSLEGLRPEWIGFGLGPRINAV 293 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ +G+ LL D+ +A LA + LNQ R+++ ++ EAL + R Sbjct: 294 GRIGRARMGIQLLTTDDPLQAEKLARRCERLNQVRQQMCGRIEAEALEQIAQQGRDLQQE 353 Query: 355 PGGLAMYHPE--WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGR-SIQGLHMRDA 411 + P+ WH+GV+GI+ASR+ ERF PV + + G + GS R I + A Sbjct: 354 RVLTILGSPQRRWHKGVIGIVASRLAERFGCPVFIGSQSRQGEISGSARQGIPEFDVFQA 413 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 LE L+ K GGH A G SL + + F++R + + L P +Q V D Sbjct: 414 LEFCKDLF----TKHGGHPAAGGFSLRAEDWPFFEERLRQFAQQQLQPEQIQPLVQIDAE 469 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHF-RLLQQRLVG--ERHLKVMVEPV 524 +S +++T+++ + L+ P G PEP+F ++LQQ+ G HLK+++ Sbjct: 470 VSLSDLTLDLYRELQHLQPCGIGNPEPVFYSRNLQVLQQQRFGPVPGHLKLLLRDP 525 Score = 44.0 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%) Query: 532 GIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 I + V +AY L ++G L++ I I P Sbjct: 591 AIRWRGAETHPL---PERVDVAYTLKAKTWQGETQLELEIVGIQP 632 >UniRef50_Q2RRN7 RecJ exonuclease n=3 Tax=Alphaproteobacteria RepID=Q2RRN7_RHORT Length = 606 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 202/586 (34%), Positives = 302/586 (51%), Gaps = 23/586 (3%) Query: 3 QQIQLRRREV--DETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLS 55 ++ LR + +P ++ R+ RGV+ +E + + + L Sbjct: 30 RRWVLRPGDERQALAISQRLGVPEVVGRVLTGRGVQ-VEEADGFLTPTLRALLPDPGHLL 88 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++KAV L A R+ I + GD+D DGATSTAL RSLG + + +P+R +GY Sbjct: 89 DMDKAVARLSKAVRDKETIAIFGDYDVDGATSTALMHRFFRSLG-ARVLIHIPDRVLEGY 147 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G + ++ A+GA++++TVD GIS+ + A++ G+ V+V DHH LPAA A++ Sbjct: 148 GPNAPALEALAAKGARVVLTVDCGISAFDALRAAKAAGLDVVVCDHHEARTELPAAVAVV 207 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP D P LA VGVAF + +A+ LRD GWF P+L LLDLVALGTV Sbjct: 208 NPKRLDEASPHTHLAAVGVAFLMAVAINRDLRDSGWFAAEQRPPPDLMALLDLVALGTVC 267 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D+VPL NR L QG+ I + PGI AL EV+ ++ A LGF LGPR+NA G Sbjct: 268 DMVPLIGVNRALVQQGLKVIAK-RTNPGIAALAEVSGVR-DRVDAFHLGFMLGPRVNAGG 325 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ +G ALL ++ E A +LDA N RKEIE + +A+ E + Sbjct: 326 RVGQAGMGAALLSSEDPLECLDFARQLDAFNGARKEIEAAVLHQAIEQVEAAPANDL--- 382 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + +WH GVVGI+ASR+KER+ P A A G G KGSGRS+ G+ + + Sbjct: 383 PLVFASGTDWHPGVVGIVASRLKERYGLPACAVALDG-GLAKGSGRSVGGVDLGRVVIAA 441 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 G++ GGHAMAAG SL D+ + F+Q GE + + + L + DG L Sbjct: 442 RE--AGVLEAGGGHAMAAGFSLRTDRLEEFRQFLGERLKDQVAALALVASLDLDGVLDVR 499 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 ++ + L AGP+G PEP F + R+ + +VG H++ + GG L +A Sbjct: 500 GANAQLVRALSQAGPYGSGNPEPRFAVANARVGKVDVVGMGHVRCFLNGPSGG-SLKAMA 558 Query: 535 FNVDT----ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 F + +A L ++ F+G ++ +++D++ P Sbjct: 559 FKAADSEIGHALLTAHGASLHVAGTLRLDSFQGRETVVLVVDDVAP 604 >UniRef50_Q5FGN3 Single-stranded-DNA-specific exonuclease recJ n=18 Tax=Rickettsiales RepID=Q5FGN3_EHRRG Length = 590 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 172/579 (29%), Positives = 291/579 (50%), Gaps = 30/579 (5%) Query: 5 IQLRRREVDE--TADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLSGV 57 + + + T L ++ R+ ++R + + +E+ + + + + Sbjct: 24 WKPYDVNLRDILTIKQKFYLSEIVARILSARKI-NIEEISNFLYPTLKSSLPNPFHMLDM 82 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 +KAV + +A I++ GD+D DGATS+AL + +G +P+R +GYG Sbjct: 83 DKAVYRICHAIHNRENIVIFGDYDVDGATSSALIKQYLSQIGVPT-TIYIPDRICEGYGP 141 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + + + + G L +TVD G +H + A+S+ + VIV DHH+ +TLP A A+INP Sbjct: 142 NTQALLKLKEIGNSLCITVDCGTIAHEPISAAKSVNLDVIVIDHHIGINTLPDAVAVINP 201 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 N D P LAGVGV+F +++AL L++QG+F +N PNL LDLVALGTV DV Sbjct: 202 NRLDETSPYTYLAGVGVSFLMLVALHKTLKEQGFF--KNNQEPNLINYLDLVALGTVCDV 259 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 +P+ NR QG+ + + G+K L +V + + LGF +GP +NA GR+ Sbjct: 260 MPIIGLNRTFVKQGLKIM-TTRQNLGLKTLSDVIGLEEKP-NIYQLGFNIGPHINAGGRV 317 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 + S+G LL +N EA ++ +L N RK +E EA+ E S + Sbjct: 318 GNASLGARLLSTNNEEEALEISEKLQNFNLERKTLENQSFNEAVEQIEATIISSN----- 372 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 + + WH G++GI+A R+K++F P I + +G K S RSI + + A+ Sbjct: 373 IIIATGNWHPGIIGIVAGRLKDKFFLPSIVISL-ENGIGKASARSIPDVDLGAAILEAKA 431 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 L G++++ GGHAMAAG S++E+K + E +++ + DG ++ + Sbjct: 432 L--GIIIEGGGHAMAAGFSIQENKI----KILHEFLSQKFHNINTRKVFKVDGIVTAEAI 485 Query: 478 TMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN 536 +++ + L+ P+G PEP F + R+ ++GE H++ ++ + GI F Sbjct: 486 NLKLWKELQFLEPFGIGNPEPRFILTNIRIKNPEVIGESHIRCLI--YDNKTFIKGICFR 543 Query: 537 V--DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 L K+ IN +RGN ++Q II++ Sbjct: 544 CIGTELGTTLLECTTTTLLGKISINYWRGNENIQFIIED 582 >UniRef50_Q0C0S5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C0S5_HYPNA Length = 597 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 185/583 (31%), Positives = 282/583 (48%), Gaps = 23/583 (3%) Query: 3 QQIQLRRREV--DETADLPAELPPLLRRLYASRGV---RSAQELERSVKGML-PWQQLSG 56 ++ +L + A L+ RL A RGV + L +++ + + Sbjct: 22 RRWRLADVDETMVRRLMPAAAGSDLVARLLAGRGVTPETAPSYLAPTLRDLFPDPSLFAD 81 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KA I+ +A G R+ V D+D DG TS+A+ R+ G + VP+R E+GYG Sbjct: 82 MDKAAGIILDAIVAGKRVCVFADYDVDGGTSSAILARYFRAWGRE-LGLYVPDRLEEGYG 140 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 SPE A+G L++TVD G ++ ++ A S+ +PV+V DHHL LP A++N Sbjct: 141 PSPEAFRWLKAQGYDLVITVDCGAAAVRALDEAVSIDLPVVVLDHHLMSGHLPETAALVN 200 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 PN DC LA GV F A+ R + + P++ LDL ALGT+ D Sbjct: 201 PNRPDCTSGQGHLAAAGVVFVFAAAMNRLARQRNIAPPAGL--PDILPYLDLCALGTLCD 258 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 + PL NR QG++ + G+ G++AL +V+ + + F LGPRLNA GR Sbjct: 259 MSPLTGVNRAFVRQGLTIMSRGE-NVGLRALADVSGI-GEIDSVYHATFLLGPRLNAGGR 316 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + D + LL D+ GEA LA L LN R+ +E +Q EA E+ + G Sbjct: 317 VGDPWLAAKLLATDDRGEAIALAERLHTLNDERRAVEAAIQDEATAQAERALAAN-PDRG 375 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG---TLKGSGRSIQGLHMRDALE 413 + WH GV+GI+A R+K+RFH P I G+G KGSGRS+ G+++ DA+ Sbjct: 376 IIIAAGEGWHPGVIGIVAGRLKDRFHLPTIIIGW-GEGLGPVAKGSGRSVTGVNLGDAIS 434 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 G++L GGHAMA GLSLE + F + ++ ++ D LS Sbjct: 435 AAAR--EGIILSGGGHAMAGGLSLEPHQIAAFDDWMVAHMAQFTAERDAALDLHIDAVLS 492 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 P T ++ L+ GP+G PEP+F R +G HL+ E G ++ Sbjct: 493 PGSATTDLYDLIAALGPFGMGAPEPVFAMTDVMPTGVRRIGANHLRFTAENNTG--RIEC 550 Query: 533 IAFNVDTAL--WPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 IA+ V + V LA +L +++ G R +Q+ I + Sbjct: 551 IAWRVADEPMGDLLRTGQRVGLAGRLKSDQWNGRRRVQLEILD 593 >UniRef50_C8WZW9 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Desulfovibrionales RepID=C8WZW9_DESRD Length = 577 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 197/587 (33%), Positives = 304/587 (51%), Gaps = 36/587 (6%) Query: 2 KQQIQLRRREVDETAD------LPAELPPLLRRLYASRGVRSAQELERSVKG----MLPW 51 Q R + E E+ P L L RG+ S QE++ + + P Sbjct: 3 NTQWIFREQPASEKTAEFSTWAKQLEISPFLCDLLWQRGLSSPQEMDVFLSPGLRHLAPP 62 Query: 52 QQLSGVEKAVEILYNAFREGT-RIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNR 110 SG+ +A +L A + T + V GD+D DG T+TAL +R G + + +PNR Sbjct: 63 HTWSGLNEAAAVLAAALEQDTGPLAVWGDYDVDGITATALVTEILRGRGYA-VLPHLPNR 121 Query: 111 FEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA 170 EDGYGL+ ++ + +G + ++TVD G+ + A+ LG+ V+V+DHH P TLP Sbjct: 122 MEDGYGLNTAGIEALYDQGVRALLTVDCGMGDLEAITRAKELGMRVVVSDHHQPHATLPP 181 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A+AI+NP + C P LAGVG AF+LM AL L +L LDLVA Sbjct: 182 ADAIVNPCVDAC--PCPELAGVGTAFFLMAALNRLLP---------GTPSDLRPSLDLVA 230 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ-KLAASDLGFALGP 289 LGT+ADVV L NRI+ G+ + G RPGI AL E + + + A + F L P Sbjct: 231 LGTIADVVSLRGQNRIVAKNGLLLLSEG-SRPGIYALKEASRLPGKAPIGAGQVAFGLAP 289 Query: 290 RLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLER 349 R+NAAGR+ + + LLL ++ A+ LA +L+A NQ R+ E G+ +A+T E+ Sbjct: 290 RINAAGRMGSATEALDLLLAPDLATAQPLAAKLEAANQERRTCEDGILEQAVTQVEE--- 346 Query: 350 SRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMR 409 + GL + +WHQG++GI+ASR+ ERF+RP I +G KGSGRSI + + Sbjct: 347 --RGVTEGLVLADAQWHQGIIGIVASRVVERFYRPTILLTR-HNGYWKGSGRSIVDVDLH 403 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 AL L + FGGH AAGLSL E K F QRF + +++ L + + D Sbjct: 404 AALTECADL----LAGFGGHPQAAGLSLTEANLKPFTQRFSQAISKQLGGAEPLPRLKLD 459 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGP 528 G + ++ +++ + + P+G P+P+F ++ + + G++H+ + ++ G Sbjct: 460 GHIPFGQIDLDLIREIELLQPFGMGNPQPVFCSEPLQVQKHNVFGKKHVSLQLQDPKSGI 519 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 +L G A+ AL P VQLA+ +N ++G S+ + I + Sbjct: 520 VLTGKAWRQAEALTPSIQGETVQLAFTPRLNHYQGLTSIDLDIKDWR 566 >UniRef50_C1F3K9 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3K9_ACIC5 Length = 592 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 181/566 (31%), Positives = 277/566 (48%), Gaps = 28/566 (4%) Query: 23 PPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFREGTRIIVVG 78 P L+ L A+RG SA+ + +L + G+ +AV + A +++ G Sbjct: 39 PLLIAELLAARGASSAEAARAFLAPSLDDLLDPYSMRGMAEAVARIEQAAARHETMLIYG 98 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+D DG T+T L A+ LG + + + VP+R +GYG+ E+++ A A G +L+++VD Sbjct: 99 DYDVDGTTATVLLKTAIERLGGT-VRFHVPHRLREGYGMQREILESAAADGVRLVISVDT 157 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGD--TLPAAEAIINPNLRDCNFPSKSLAGVGVAF 196 GI + A E A LG+ +IVTDHHLP D +P A A++NPN C + K L G GVAF Sbjct: 158 GIRAFAAAEAAAELGLDLIVTDHHLPEDGTGIPRALAVLNPNQPGCEYACKYLCGAGVAF 217 Query: 197 YLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIR 256 L AL L L ++A+ TVAD VPL NR + G++ +R Sbjct: 218 KLSQALLEKQDRTL------ARTKILPSFLKMLAIATVADAVPLLGENRTIVSIGLAELR 271 Query: 257 AGKCRPGIKALLEVANRDA--QKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGE 314 G++ALL A D + + A+D+ F L PR+NAAGR+D S V L + Sbjct: 272 R-PVNAGLRALLTEAKLDPARKAITATDVAFRLAPRINAAGRMDIASEVVELFTTRDPQR 330 Query: 315 ARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILA 374 AR LA +L+ LNQ R+ E + + E+L + M WH+GV+GILA Sbjct: 331 ARDLAAKLEQLNQDRRATEAAILER---ILERLAEPHFAEARCIVMDGEGWHRGVLGILA 387 Query: 375 SRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAG 434 SRI ++ +P + + DG GSGRSI G H+ +ALE L+ KFGGHA A G Sbjct: 388 SRILDQTGKPALVISH-EDGEAHGSGRSITGYHLLEALESCHDLF----TKFGGHAHAVG 442 Query: 435 LSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 S+ ++ + R E E + L G +V L+ +T LR P+G Sbjct: 443 FSMPSERVPELRARLVEHAAERITEQDLGGPLVCHAELALDHITAAAFSWLRRLEPFGMG 502 Query: 495 FPEPLFDGHFRLL--QQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD--NGVREV 550 EP+F L R + E+H+++ + G + + ++ + + Sbjct: 503 NEEPVFVARKVRLAGPVRTMKEKHVRLSLSHGPRGVRISALGWHWAERVAALGIQEDDLL 562 Query: 551 QLAYKLDINEFRGNRSLQIIIDNIWP 576 +AY+L NE L++ I ++ P Sbjct: 563 NIAYRLRENEHPEYGGLELEIVDLQP 588 >UniRef50_A2SJG6 Exonuclease RecJ n=8 Tax=Proteobacteria RepID=A2SJG6_METPP Length = 581 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 259/588 (44%), Positives = 365/588 (62%), Gaps = 28/588 (4%) Query: 3 QQIQLRRREVDETADLP-AELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAV 61 QI +R L A + PLL RL+A+RG+ +A++L+ S+ +LP L G A Sbjct: 1 MQIAVRDVPPRTAWSLEQAGVSPLLARLFAARGITAAEQLDDSLALLLPPTALLGAADAA 60 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN--IDYLVPNRFEDGYGLSP 119 +L +A ++ RI+VV D+D DGAT+ A+++ +R LG + + Y+VP+R GYGL+P Sbjct: 61 RLLADATQQRRRIVVVADYDCDGATACAVALRGLRLLGATPETLGYVVPDRQVHGYGLTP 120 Query: 120 EVVDQAHA----RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG-----DTLPA 170 +VD A + ++VTVDNGI+S GV HA++ G+ V+VTDHHLP LP Sbjct: 121 AIVDLAFGVFGGQAPDVLVTVDNGIASLDGVAHAKARGLQVLVTDHHLPALQDDRVVLPT 180 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A+ I+NPN C F SK+LAGVGV FY++LALR+ LR +G FD + L VA Sbjct: 181 ADVIVNPNQPGCPFESKALAGVGVMFYVLLALRSELRSRGVFDAAAQPRLDALLDL--VA 238 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPR 290 LGTVADVV LD NNR L QG+ RIR+G+ +PG++AL + A RD + + D GFALGPR Sbjct: 239 LGTVADVVKLDENNRRLVAQGLRRIRSGRMQPGVRALFDAAARDPARASGFDFGFALGPR 298 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 LNAAGR+++M++G+ LL D+ G A LA +LDA+N+ R+E+E GM+ +A + E L Sbjct: 299 LNAAGRMENMTLGIECLLTDDAGRAAELAQQLDAINRERREVESGMREQAEAMLEALVAR 358 Query: 351 RD------TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQ 404 D P LA+Y P +H+GVVGI+ASR+K+R HRP FA DG LKGSGRSI Sbjct: 359 DDHGAGAGDPPPALAIYDPGFHEGVVGIVASRLKDRSHRPTFVFARGQDGLLKGSGRSIP 418 Query: 405 GLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQG 464 G H+RDAL+ + +PG++ +FGGHAMAAG +L E F F++ ++ EWLD + LQ Sbjct: 419 GFHLRDALDLVSKRHPGLLRRFGGHAMAAGATLAEADFARFERALVQVAGEWLDAAALQR 478 Query: 465 EVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPV 524 + +DGPL + + L A WGQ F P+F ++ QRLVGE+HLK+ V Sbjct: 479 TLRTDGPLGAEYFNADTVRALE-AQVWGQAFEPPVFSDRVEVVSQRLVGEKHLKLAVRH- 536 Query: 525 GGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIID 572 GG L D I F +V LAY+L ++E+ G + +Q+I++ Sbjct: 537 -GGALRDAIWFGHSE-----PVAAQVTLAYQLRVDEYNGRQRVQMIVE 578 >UniRef50_A7KV88 SsDNA exonuclease n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7KV88_9CAUD Length = 577 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 160/573 (27%), Positives = 277/573 (48%), Gaps = 38/573 (6%) Query: 23 PPLLRRLYASRGVRSAQELERSVKG-MLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 L+ + +RG+ +E R K + ++ ++KAV + A ++ I + GD+D Sbjct: 17 DDLIYDILEARGIEDVEEFLRITKKKLHNPYKMRDMKKAVTRIIEAVQKKETIGIFGDYD 76 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGIS 141 ADGA+STA+ VL +R LG ++ Y VP+RF+DGYG++ +D G L++T D GI+ Sbjct: 77 ADGASSTAIWVLILRELGL-DVMYFVPDRFKDGYGVNQRGLDLFADNGVDLVITCDTGIT 135 Query: 142 SHAGVEHARSLGIPVIVTDHHLPGDT-----------------LPAAEAIINPNLRDCNF 184 + V +A++ G+ +I+TDHH P ++ L ++NP DC + Sbjct: 136 AIQQVAYAKNKGMDIIITDHHEPQESSAYKDDVQKVGQHIGDYLIPDTIVVNPKRPDCKY 195 Query: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANN 244 P K LAGVGV+F ++ A+ + G + +D+VALGT AD++ + N Sbjct: 196 PFKGLAGVGVSFKILCAVCDKIHPAGRAGA--------YQYMDIVALGTFADMMDIIDEN 247 Query: 245 RILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGV 304 R++ G+ + R G+ L + +++ + D+G+ + P +NAAGR+ V Sbjct: 248 RVIGKLGIDMMNRKPNR-GLYQLFRAN--ELKQITSQDIGWTIAPCINAAGRIVSAEEAV 304 Query: 305 ALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE 364 +L+ N A A +L +N+ RKE+ + + E D + Y+P Sbjct: 305 DMLISTNKLAAYRCAKKLVEINKERKELTKTYVGNIIKSVEA--DQIDNPTNIIVHYYPG 362 Query: 365 WHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMM 423 +G+VG++ASR+ F++P I A + G KGSGRSI G + +L R + G Sbjct: 363 IPEGIVGLIASRLMNHFYKPSIIMTDADEPGLYKGSGRSITGFDLFTSLMRQTDVMEG-- 420 Query: 424 LKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483 FGGHAMA GLS+ DKF+ + R L + LQ +V D + + ++ Sbjct: 421 --FGGHAMACGLSVTNDKFQELKTRMEFLADTMISEIDLQPKVYVDAIVKGNIIDLDFVD 478 Query: 484 LLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALW 542 + P+G+ +P F R++++ VG+ + G I F + Sbjct: 479 EMNKMEPFGRGHAQPSFMMEKMRVIREMPVGDEKNHLWALMSDGKKTFSTIGFFLYEKYE 538 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + + + D NE++G +Q+ I ++ Sbjct: 539 ALGKPKNIDIVFVPDRNEYKGKVDVQLKIKDLR 571 >UniRef50_C6NXH8 Single-stranded-DNA-specific exonuclease recJ n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NXH8_9GAMM Length = 539 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 204/527 (38%), Positives = 304/527 (57%), Gaps = 20/527 (3%) Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++AV + A R ++VGD+D DGA ++A+ ++ G + +VPNRF +GYG Sbjct: 1 MKEAVAWIAYAVRHQWPTVIVGDYDVDGACASAILRGSLS--GLLPVTSIVPNRFTEGYG 58 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+P +VD+ +L++TVDNG+S+HAGV A+ G+ V+VTDHHLPG P A+ I+N Sbjct: 59 LTPAIVDRIAPE-TKLVITVDNGVSAHAGVAAAKQRGMTVLVTDHHLPGPLRPPADVIVN 117 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 PN C FP KS G VA+YL+LAL I + +DLVAL TVAD Sbjct: 118 PNQPGCPFPWKSTCGTAVAWYLVLALHQT-------HPHWIGREQVESQIDLVALATVAD 170 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +V L+ NNR+L G+ RIR GK PG+ + +A + + D F +GPRLNAAGR Sbjct: 171 LVKLERNNRVLVANGLRRIREGKINPGLSGIATMAQIELSTIREQDFAFKIGPRLNAAGR 230 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L DM G+ LLL + + + L+ +N RKE++ ++ EA+ + + S D Sbjct: 231 LADMQTGIHLLLSRDAEQVERWSRFLETVNAQRKEVQAQIEQEAVEIVNGMSDSGD---P 287 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG-TLKGSGRSIQGLHMRDALERL 415 L + WH GVVGI+A ++KERF RP G+G +GSGRS+ G H+RDAL RL Sbjct: 288 VLCVGSDHWHSGVVGIVAGKLKERFERPAFVLTATGEGDLAQGSGRSLDGWHLRDALARL 347 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 DT +PG++ ++GGHAMAAGLS+ + +F F+ ++ E + L +V DGPLS A Sbjct: 348 DTEHPGILQRYGGHAMAAGLSIPKSRFDAFRAGINGVLLEQVPTGALHRQVHCDGPLSAA 407 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGG----PLLD 531 E T+E+A+ + AGPWGQ FPEPLF+ F + R + H K+ + L++ Sbjct: 408 ECTLEMARAIEAAGPWGQGFPEPLFENTFVVESARTMKGGHWKLHLRLEDSSSVPTNLVE 467 Query: 532 GIAFNVDTALWPDNGVR--EVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + F + P+ ++ Y+L +N ++G +LQ+ I + +P Sbjct: 468 AVHFLDGKEVAPEPPPSGLRIRAQYRLQVNRWQGREALQLQIHSAYP 514 >UniRef50_A9IVX3 Single-stranded-DNA-specific exonuclease n=3 Tax=Bartonella RepID=A9IVX3_BART1 Length = 594 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 185/572 (32%), Positives = 289/572 (50%), Gaps = 20/572 (3%) Query: 11 EVDETADLPAELPPLLRRLYASRGVRSAQ---ELERSVKGML-PWQQLSGVEKAVEILYN 66 P L R+ ++RGV + ++ +++ ++ + ++ A E + Sbjct: 29 NNARAISQKFGFPDQLARVLSARGVDETEAVAFIDPTLRMLMPDPESFRDMQCAAERIVK 88 Query: 67 AFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH 126 A ++ V GD+D DGA ++AL R G + +P+R +GYG + + + Sbjct: 89 ALLNQEQVAVFGDYDVDGACASALIARFFRYFGIE-VKIYIPDRIVEGYGPNEQAMRMLV 147 Query: 127 ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPS 186 GA+LI+TVD G +S V+ AR G V++ DHH + A A++NPN D Sbjct: 148 QEGARLIITVDCGANSPDAVKAARLAGADVVILDHHQMSEIHQEAIALVNPNRPDDFSEQ 207 Query: 187 KSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRI 246 L GV F + + LR + + +P+L +LDLVAL T+ DVVPL NR Sbjct: 208 GYLCAAGVVFVTLAWVHHLLRKKQF----EGPLPDLLSMLDLVALATICDVVPLQGVNRA 263 Query: 247 LTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVAL 306 +G+ + GI AL +VA + L + LGF LGPR+NA GR+ D ++G L Sbjct: 264 FVVKGL-HVARSMHNLGIAALTKVARI-GEPLNSFHLGFLLGPRINAGGRIGDQALGARL 321 Query: 307 LLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWH 366 L C+N EA +A +LD LNQ R+E+E+ +A + L + ++ P L + H EWH Sbjct: 322 LSCENKDEADRIAEQLDQLNQERQEMEKIQLAQAESYIASLYQDQEP-PLSLVISHQEWH 380 Query: 367 QGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKF 426 G++GILASR+KERF PV A A DG GSGRSI G+ + + TL ++ K Sbjct: 381 PGIIGILASRLKERFFCPVFAIALKEDGNGVGSGRSIHGIDLGALVREAVTL--NLLEKG 438 Query: 427 GGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLR 486 GGH+MAAG++++ K + F++ E V+ + + + DG LS + + +LL Sbjct: 439 GGHSMAAGITIQSTKIEFFRKWLEEKVSVMVSQLHAKKSLRIDGSLSASGANQALFELLE 498 Query: 487 DAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD- 544 AGP+G P+F RL+ VG+ HL++++ G G L GIAF D Sbjct: 499 KAGPFGTGNATPVFVLPSHRLMNLSEVGKGHLRLIIS-NGEGKKLQGIAFRAVGTALGDF 557 Query: 545 ---NGVREVQLAYKLDINEFRGNRSLQIIIDN 573 N + LA L +N + G + Q+ + + Sbjct: 558 LSRNIGEMIHLAGHLSLNYWNGTINPQLRVID 589 >UniRef50_Q1NUV0 RecJ exonuclease n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NUV0_9DELT Length = 569 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 194/573 (33%), Positives = 288/573 (50%), Gaps = 24/573 (4%) Query: 9 RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEIL 64 +P L + RG+R L+ + + L G+ A +L Sbjct: 10 PPASRGRLAASCNIPESLVAVLWRRGLRDPAALDAFLNPSLADLPDPDLLKGMAPASRLL 69 Query: 65 YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124 + +G I++ D+DADG T+ AL L +R LG + YL+P+R DGYGL P ++ Sbjct: 70 ADWLAKGAPIVIYADYDADGLTAGALLYLYLRRLGHRRLHYLIPHRVRDGYGLHPHLLAS 129 Query: 125 A--HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDC 182 A+ L++TVD GI+ V A LG VI+TDHH P LPAA A++NP+ C Sbjct: 130 VPVAAQRQPLLITVDCGITDREAVAAATELGFKVIITDHHQPDGELPAAAAVLNPHQAGC 189 Query: 183 NFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA 242 +FP +LAGVGVAFYL++ LR L +QG R +P L + LDLVALGTVAD+V + Sbjct: 190 SFPCPNLAGVGVAFYLLMGLRRRLVEQGS--HRAAELPRLKDFLDLVALGTVADMVKVTG 247 Query: 243 NNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSV 302 NRIL G+ ++ + RPG AL VA A D+ F+L PRLNAAGR+ + + Sbjct: 248 ANRILIRAGLEVLQGNQ-RPGPAALAAVAGI--TPGYAEDISFSLAPRLNAAGRIGEPEI 304 Query: 303 GVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYH 362 LL+CD+ G+A LA ELD LN+ R+ + + + L + H Sbjct: 305 AFKLLICDDPGQAAALAGELDELNRQRRAMSDKIYQDVRQTISSNIAD---LQNIILFAH 361 Query: 363 PEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGM 422 +WH GV+GI A+R+ + RP I A +G KGSGRS+ GL + A+ L Sbjct: 362 EQWHPGVLGIAATRLALEYDRPAILCALT-NGVAKGSGRSVAGLDLLAAVAGCREL---- 416 Query: 423 MLKFGGHAMAAGLSLEEDKFKLFQQRFG-ELVTEWLDPSLLQGEVVSDGPLSPAEMTMEV 481 + +GGHA A G+S+ ++ F++R +L++E +GEV D + M Sbjct: 417 LAGYGGHAAALGVSMPKEVVAQFRERLNQQLISELPRARQERGEVDVDWFFADGAMEPGF 476 Query: 482 AQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTAL 541 + P+G PEP F R+ + +VG +HL+ + + IAF AL Sbjct: 477 TAAYQRLAPFGPGNPEPQFRIRGRVGKATVVGSKHLRFSWQQAD--QSYNAIAFGRADAL 534 Query: 542 WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +G V+ + L N ++G S Q+ + + Sbjct: 535 PLTSG--VVEFTFTLRRNFYQGRSSWQLKVSEL 565 >UniRef50_D1N562 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N562_9BACT Length = 569 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 182/582 (31%), Positives = 294/582 (50%), Gaps = 28/582 (4%) Query: 3 QQIQLRRREVDE---TADLPAELPPLLRRLYASRGVRSA---QELERSVKGMLPWQQLSG 56 + +L +DE LP + +A+RG+ L + + + G Sbjct: 4 KNWKLAGNNLDEQANRIQQKFSLPHPIALYFAARGIGEDNIQDFLNPRLANLTDPYRFPG 63 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++A L++A I++ GD+D DG T++AL L +R G + +P+RF+DGYG Sbjct: 64 IQEASRRLWDAIAHKEPILIHGDYDTDGITASALLALVLRQNG-GIVHSFIPHRFDDGYG 122 Query: 117 LSPEVVDQAHAR--GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 +PE + +A +++VTVD GI+S V A GI VIVTDHH G LP A A+ Sbjct: 123 FTPESLQKALDTFGPCKVLVTVDCGITSCDAVNDAVERGIDVIVTDHHEAGSELPKALAV 182 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 INP + + L+G G AF L A + R+ L E+LD VALGTV Sbjct: 183 INPKVYPELEDLQLLSGAGAAFKLSHAFIKYGREHNL----GGFQTRLEEVLDYVALGTV 238 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 AD+VPL NR++ G+ +R + RPG++AL+E + +L +D+ F L PR+NAA Sbjct: 239 ADIVPLLGENRVMVKFGIETLRK-QLRPGVRALIESSKLR-SELTPADITFRLAPRINAA 296 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ D +V + LL ++I EA A++L+ N+ R+E EQ + EA E+ + Sbjct: 297 GRVGDANVALQLLESEHIVEAYQCASQLETYNRVRQEKEQEIYQEACEQIERNLAWQ--S 354 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 L + +WHQGV+GI+ASR+ ++RP I GD GSGRSI L++ + L Sbjct: 355 EYSLLVAGRDWHQGVIGIVASRLARDYNRPTIVLTIQGD-VAYGSGRSIACLNLVEVLSH 413 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 L + ++GGH MA G+ L+ D+ F + V + + + L+ + DG S Sbjct: 414 TSEL----LDRYGGHPMAVGIGLKADRIADFFEAMDREVRKQISSADLEDFISYDGEASL 469 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 E+T E + L P+G +P++ + ++ + +VG H + + G +D I Sbjct: 470 HELTPEFFKYLAMLSPFGHSNVKPIYRFNEVQVQRCSVVGGAHTRGTLRGRTG--QIDFI 527 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 AFN ++ + + + + +N +G Q+ I +I Sbjct: 528 AFNRPSSAF---YGKTLDVLATPQLNRHQGLEIPQLNIIDIR 566 >UniRef50_A3UCE8 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UCE8_9RHOB Length = 592 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 180/583 (30%), Positives = 280/583 (48%), Gaps = 22/583 (3%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLSGV 57 +++ + + L RL A+RG+ +A++ + L G+ Sbjct: 17 WRLKAADDNAIQAICRATGVSDALGRLMAARGL-TAEDAPAFLAPKLRDSFPDPSTLKGM 75 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 ++A +++A G RI + D+D DGATS A +R+LG I VP+R E+GYG Sbjct: 76 DEAARRIWDALDAGDRIALFADYDVDGATSAAQLGGWLRTLGADPI-IYVPDRIEEGYGP 134 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + + +GA+L++T+D G +S + A +G+PV+V DHHL +P A+A++NP Sbjct: 135 NAPALKSLKEQGARLVITLDCGAASVGPLTAAHEMGLPVVVIDHHLMDGEIPPADALVNP 194 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 N LA GV F L+ AL R +G F + A PN+ + DL ALGT+ DV Sbjct: 195 NQPGDVSGCGHLAAAGVTFVLLAALNREGRRRGAF--KGQAEPNVLDFADLAALGTICDV 252 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 V L NR + QG+ + + RPG+ AL A + GF LGPR+NA GR+ Sbjct: 253 VSLTGVNRAIVAQGLKVM-SAWSRPGMAALAAAAGVQG-PASPYHAGFLLGPRINAGGRV 310 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 +G L++ + EA +A LDALN R+ IE + +A E L+ D Sbjct: 311 GQSDLGARLMMTQDPKEAAHIAQTLDALNAERRAIETEVLDQAQAQVEALKLEDD--TPI 368 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLD 416 L WH GV+GI+A RIKERF+RP I + G KGSGRS G+++ A+ Sbjct: 369 LIASGEHWHPGVIGIVAGRIKERFNRPAIVIGVDPETGLGKGSGRSCTGVNLGAAVAAAR 428 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 G+++ GGHAMA GL+++ ++ + + + D +SP+ Sbjct: 429 E--EGLLVAGGGHAMACGLTVDVNRIGELTDYLTARLKQEWIAAEEARTYSVDAVISPSA 486 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 ++ E + L A P+G PEP F R + VG H++ E GGG L GI+F Sbjct: 487 VSFEFCEALSAAEPYGMGNPEPRFAFSSLRRTYAQRVGTDHVRFTFESPGGGR-LTGISF 545 Query: 536 NVDT----ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + +A KL + R R ++ ++++ Sbjct: 546 RSADQPMGQALLNGPDGLWHVAGKLRAEDNRYGRKAELHLEDL 588 >UniRef50_C6XKA3 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XKA3_HIRBI Length = 609 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 190/582 (32%), Positives = 285/582 (48%), Gaps = 20/582 (3%) Query: 3 QQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQE---LERSVKGML-PWQQLSG 56 ++ ++R + ++ ++ L P L+ +L A RGV + ++K + + Sbjct: 32 RRWRVRPVDDEKATEISRRLSKPDLIGKLLAGRGVTLDEADTYFSPTLKALFPDPSSFAD 91 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++ A E++ A G + V+ D+D DG TS A+ ++ I Y VP+R +GYG Sbjct: 92 MDAACEVILEALVSGRKCAVLADYDVDGGTSAAILTKYFKAWDRELILY-VPDRLTEGYG 150 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 S E + +GA+L++TVD G ++ +E A SLG+ V+V DHHL P A A++N Sbjct: 151 PSVEAFESLKEQGAELVMTVDCGAAAVEALEAAHSLGLDVVVLDHHLMQSEPPPAAAVVN 210 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 PN DC +A GV F L L R + + P+ + LDL ALGT+ D Sbjct: 211 PNRPDCKSGCGHMAAAGVVFVLTAGLNRLARQKSVAPAGGL--PDPMKWLDLCALGTLCD 268 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 + PL NR G+ ++ G+ AL +V+ +A K + F LGPRLNA GR Sbjct: 269 MAPLKGVNRAFVNAGLKVLQR-MDNVGLAALSQVSGVEAPK-SVYHATFLLGPRLNAGGR 326 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + D + LL ++ EA LA L ALN+ RKEIE + EA + E G Sbjct: 327 IGDPWIAAKLLATEDRKEALALAERLQALNEARKEIEAEILDEATRIAES-RLVEKPDAG 385 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD--GTLKGSGRSIQGLHMRDALER 414 + + WH GV+GI+A R+KE+FHRP I + KGSGRS+ G+++ + + + Sbjct: 386 AIVVGGEGWHPGVIGIVAGRLKEKFHRPTIVIGWGEELGPVAKGSGRSVAGVNLGNLIAK 445 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 G++L GGHAMAAGLSLE + + F+ E E + DG LSP Sbjct: 446 ASK--EGIILSGGGHAMAAGLSLEPSQLEAFRDYMEESTAEAKKELEQARVLELDGLLSP 503 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 A E+ + AGP+G PEP+F + R R VG HL + GG L I Sbjct: 504 ASADGELLLSVDGAGPYGAGSPEPIFAMANVRSHNVRRVGVDHLSFEILGEDGGK-LRAI 562 Query: 534 AFNVDTAL--WPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 AF A + + LA KL +E+RG +Q + + Sbjct: 563 AFRAADADLGQAILSGQMMHLAGKLKPDEWRGAGKVQFEVSD 604 >UniRef50_C6XG71 Single-stranded-DNA-specific exonuclease protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XG71_LIBAP Length = 600 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 167/575 (29%), Positives = 273/575 (47%), Gaps = 22/575 (3%) Query: 13 DETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLSGVEKAVEILYNA 67 +P ++ R+ +R V S + + M L+ +KA + A Sbjct: 30 ALAITQKHAIPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA 88 Query: 68 FREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHA 127 +I++ GD+D DGA S AL + + N + +P+R DGYG +P ++++ Sbjct: 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV-NANMYIPDRIVDGYGPNPSLMEKFIN 147 Query: 128 RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSK 187 GAQLI+TVD G +S+ +++A + GI VIV DHH A A++NPN D Sbjct: 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQG 207 Query: 188 SLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRIL 247 L GV F +++ + LR + L + TV DVVPL NR Sbjct: 208 HLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALA----TVCDVVPLIGLNRAY 263 Query: 248 TWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALL 307 +G+ + + PG+KAL+E N + A +LG+ +GP +NA GR+ + ++G LL Sbjct: 264 VVKGL-MVARRQGNPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLL 321 Query: 308 LCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQ 367 + D+ E +LA +LD LNQ R+ +E M +A + + + WH Sbjct: 322 ISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVL-TQCDDIQQASVIVVEGDRWHP 380 Query: 368 GVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 G+VG+LA+R+KE+F RP A + DG GSGRSI+G + + G+++K G Sbjct: 381 GIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVE--EGILVKGG 438 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRD 487 GHAMAAGL++E F F + + + DG L+ + + + + +L Sbjct: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498 Query: 488 AGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD----TALW 542 AGP+G P P+F + +L R+V HL++ E L IAF V Sbjct: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFE-SQDSETLQAIAFRVYGTPLGEFL 557 Query: 543 PDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 + + + + L +N +RG++ Q+ + + P+ Sbjct: 558 MQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPV 592 >UniRef50_B0NCG3 Putative uncharacterized protein n=9 Tax=Clostridiales RepID=B0NCG3_EUBSP Length = 586 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 175/607 (28%), Positives = 305/607 (50%), Gaps = 53/607 (8%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSG 56 M+Q + LR+ E ++ P L L +R V + + + + + + Sbjct: 1 MEQWVLLRKGADFEGIGKRFQISPRLACLIRNRDVIGDEAIAQYLNGTIADLYDGMLMKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++KAV+IL E RI V+GD+D DG +T + + + LG + D +P+R +DGYG Sbjct: 61 MDKAVDILREKIAEQKRIRVIGDYDIDGVNATYILLEGLEKLG-AEADSDIPSRMKDGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT--------- 167 L+ E++++A+ G I+T DNGI++ + + LG+ ++VTDHH Sbjct: 120 LNIELIERAYQDGIDTIITCDNGIAAAEEIACGKRLGMTIVVTDHHEVPFEEEEDGKKYL 179 Query: 168 LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLD 227 LP A+A+I+P C +P K L G +A+ L+ AL ++ +L L++ Sbjct: 180 LPPADAVIDPKQPGCEYPFKGLCGAAIAYKLVEAL---------WEATGGDAEDLDYLIE 230 Query: 228 LVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFAL 287 VA+ TV DV+ L+ NRI +G+ ++ PG+++L+ D ++ A +GF L Sbjct: 231 NVAIATVGDVMELENENRIFVKEGLQMLKRTHS-PGLRSLIACTGVDKDRIGAYHIGFVL 289 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 GP +NA+GRLD + LL + EA +LA +L ALN +RKE+ +A + + Sbjct: 290 GPCMNASGRLDTAKRTLNLLRAKSGKEADILAGDLKALNDSRKEMTDIAVEQARQIVDTT 349 Query: 348 ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLH 407 + +D L +Y P H+ + GI+A RI+ER++RP I A +G +KGSGRSI+ + Sbjct: 350 KAGKD---RVLVLYLPGCHESLAGIVAGRIRERYYRPAIILTDAEEG-IKGSGRSIEAYN 405 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 M + L R L + KFGGH +AAG+SL ++ + ++ + L+P + +VV Sbjct: 406 MYEELSRCRDL----LTKFGGHKLAAGMSLAKENIEELRRTLNDNCR--LEPKDMAEKVV 459 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGG 526 D L + +T E+ + L P+G+ +P+F + L+ R++G+ + ++ Sbjct: 460 IDMELPFSCVTEELVEELTLLEPFGKGNTKPVFAARNVELISGRILGKNRNVLKLQVKDS 519 Query: 527 GPL-LDGIAFNVDTA---LWPDNGVR--------------EVQLAYKLDINEFRGNRSLQ 568 + + F L + + ++ + Y DINE+ G R++Q Sbjct: 520 SQTAREAVCFRGAEQMLSLLEERYGKEAVDLLMKGRGGQMKLSVTYYPDINEYMGKRTVQ 579 Query: 569 IIIDNIW 575 I+I + Sbjct: 580 IVITHYQ 586 >UniRef50_B9K8M2 Single stranded DNA-specific exonuclease n=6 Tax=Thermotogaceae RepID=B9K8M2_THENN Length = 958 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 146/543 (26%), Positives = 253/543 (46%), Gaps = 34/543 (6%) Query: 5 IQLRRREV--DETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVE 58 +L + + +L + R+ +RG+ + + + +E Sbjct: 17 WELSHPDEHAVKRISQRFDLSEIAARVLVNRGIDTEEAARSFLFTDETCQHDPFLFKDME 76 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 KAVE L EG +++ GD+D DG TS + + G +D +P+R E+GYG+ Sbjct: 77 KAVETLLQVRSEGQLVLIHGDYDVDGITSAVVLKEFLEENGW-KVDVYIPHRIEEGYGVQ 135 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 E V G +VTVD GI++ ++ A+ LG+ VIVTDHH +P A+A++NP Sbjct: 136 KENVLSFKEMGVSCLVTVDCGITAVESIDLAKRLGMRVIVTDHHEVNGDIPPADAVVNPK 195 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 + ++P + LAGVGV + L+ AL L+ P++ + L+LVALGTVAD+V Sbjct: 196 VPGEDYPFRDLAGVGVTYKLVQALAQVLKY-----------PDVEKYLELVALGTVADMV 244 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 L NR +G+ + + + +KL + D+ + + PRLNAAGR+ Sbjct: 245 SLLDENRYFVKKGIELLMKTERLGLK---KLLEKLGLKKLTSHDISYKIAPRLNAAGRMG 301 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 + LL + + L LN R+ IE+ + EA+ E + +D + Sbjct: 302 SATDAFVLLTMKDPARTEGVVERLMELNNERRRIERQIYKEAVEKIEANDLWKD---PII 358 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + WH GV+GI+A+++ R+ +PV + + + KGS RS G + +A Sbjct: 359 VVAGENWHVGVIGIVAAKLANRYEKPVAVVSLSDE-YAKGSIRSYNGYDIMNAF---SGD 414 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 + + GGH+ AAG SL ++ + F++ + E D +V+ D +S ++ Sbjct: 415 VLEIFDEIGGHSSAAGFSLRKEHLESFKEYMKNVALEMKDE-----KVMVDAEVSLNDVD 469 Query: 479 MEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 + ++ P+GQ PEP+ + + + GE + V + G L+ I +N Sbjct: 470 ERFIEDIQLLMPFGQGNPEPVLLFSNLLIEKIHFFGEDNSNVFLHLKDGERKLEVIGYNF 529 Query: 538 DTA 540 + Sbjct: 530 KSL 532 >UniRef50_B5YIG7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIG7_THEYD Length = 557 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 171/583 (29%), Positives = 283/583 (48%), Gaps = 43/583 (7%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLP---WQQLSGVE 58 + + +E + + ++ S+G++ E+ + + +++G+ Sbjct: 5 EWVVVKTNQEYLQYISKSLNITIPTAQVLLSKGLKDIDEIYSFLNPNIDNIDPFEITGIY 64 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 +A +I+ A + T+I++ GD+DADG TSTA+ + G + + Y +P+R + GYGLS Sbjct: 65 EATKIIDAAIKSETKILINGDYDADGLTSTAILYDILIKKG-AKVFYHIPHRIQHGYGLS 123 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP-----GDTLPAAEA 173 +++A GA+LI+TVD GI VE+A GI VI+TDHH P P A A Sbjct: 124 IRSIEEAKKIGAKLIITVDCGIRDFEAVEYANKEGIGVIITDHHEPLRLNEEVVTPHALA 183 Query: 174 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGT 233 +INP + + LAGVGVAF L +AL LDLV LGT Sbjct: 184 VINPKIDGKPY-YNYLAGVGVAFMLAMALSRE---------------EALGYLDLVTLGT 227 Query: 234 VADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNA 293 AD+VPL NR L G I R IK L +A ++ + L F L PR+NA Sbjct: 228 YADMVPLIHANRTLIKHGWEMI-DSPVRNSIKMLKNIAGINSNSIRGFHLSFCLIPRINA 286 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 GR+D V L+ ++ E L+ L+ +N R++ E+ + E E+ Sbjct: 287 PGRIDQAGDVVRFLISEDESELDSLSKWLNQINSMRQKTEEKIMAE----VEEKLSKEFD 342 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 + ++ +WH GVVG +AS++ ++F+RP + G+ KGS RS G+ +++ L Sbjct: 343 DEPVIVLWG-DWHPGVVGTVASKLMDKFNRPAFILSIQGE-KAKGSARSPAGIDLQEFLN 400 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 L +++FGGH AAG++L +D F+++ + E + + ++ D ++ Sbjct: 401 ASKDL----LIRFGGHKQAAGMTLLKDNLYAFKEKLCLIAQEIVRDD--KNILLLDAAVN 454 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 E+T +VA+ + P+G+ EPLF +L R VG HLK+ + G + Sbjct: 455 LNEVTEKVAEEISLLEPFGEGNREPLFGAKELTVLNLRKVGNNHLKMFLR--QNGNTIGA 512 Query: 533 IAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 I F++ A + A+ INE+ G +SLQ+ + + Sbjct: 513 IGFDMGDA--QILEGSLIDAAFTPSINEWEGMKSLQLQLKALR 553 >UniRef50_D1VS52 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS52_9FIRM Length = 598 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 173/606 (28%), Positives = 291/606 (48%), Gaps = 51/606 (8%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGM----LPWQQLSG 56 M++ ++ + E + L +L R+ +RG++S +ELE+ +K L Sbjct: 1 MEK-WFIKNSKDYELSYEKYGLNKILYRILLNRGIKSDEELEKFLKPDLSNIHSPIFLKD 59 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + K+ I+ + +G+ I +VGD+D DG TST + ++ +G + + Y +PNR DGYG Sbjct: 60 MVKSANIIISHITKGSNIRIVGDYDVDGITSTYILYCGLKKIG-AKVSYDIPNRVLDGYG 118 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP---------GDT 167 ++ +++D+A LI+T DNGI++ V++AR+LGI VIVTDHH P + Sbjct: 119 INNKIIDRAKEDDISLIITCDNGIAAFEPVKYARNLGIDVIVTDHHEPAKVLIEGVLQEK 178 Query: 168 LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLD 227 LP A +I+P + D +P K + G VAF L+ L + + L Sbjct: 179 LPDANGLIDPKVSDSKYPFKDICGACVAFKLISYLY--------LIKGKEEQEVYDDFLA 230 Query: 228 LVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFAL 287 VAL TV DV+PL NRIL G+ ++ + G+ AL+ + + + +GF + Sbjct: 231 YVALATVCDVMPLKDENRILIHYGLEALKNVQD-VGLNALISACDIKKEDIDVYHIGFII 289 Query: 288 GPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 GP LNA GRL V LLL + A A E+ ++N R+ I+A+ + ++ Sbjct: 290 GPTLNACGRLKTAKEAVELLLEKDYNSAIEKAKEIRSINNQRQNYTNDGYIKAIKIIKEQ 349 Query: 348 ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLH 407 E + L +Y P ++ +VGI+A RIKE+F+RP I +G +KGSGRSI + Sbjct: 350 ELLKKY--PILLIYVPNINESIVGIIAGRIKEKFYRPTIVLT-DSNGIIKGSGRSIDEYN 406 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 M + + + FGGH MA GLS++++ F F + L L ++ Sbjct: 407 MFEEVNVFRDE----LEAFGGHKMACGLSIKKENFNNFNLNLNKNAK--LTRDDLTKKIY 460 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGG 526 D PL+ +++ M++ Q L P+G +PLF ++ + G + + Sbjct: 461 IDYPLNFSQINMKLIQDLNKLKPFGTDNEKPLFGSRNLKITDIAIFGTNKNVIKLMLEDS 520 Query: 527 GPLLDGIAFNVDTALWPD-----------------NGVREVQLAYKLDINEFRGNRSLQI 569 G + + F D N ++ + Y +D+N FRGN S+++ Sbjct: 521 GVFQNALLFKDSNEFLNDLKKAYGQEAVTGLLQKSNKNIKIDVIYSIDVNNFRGNSSIEL 580 Query: 570 IIDNIW 575 + + Sbjct: 581 RLKSYR 586 >UniRef50_A8SN06 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SN06_9FIRM Length = 581 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 180/603 (29%), Positives = 280/603 (46%), Gaps = 50/603 (8%) Query: 1 MKQQIQLRRREVD-ETADLPAELPPLLRRLYASRGVRSAQ---ELERSVKGMLPWQQLSG 56 MK+ + E +E + +L A+R + L + K + + Sbjct: 1 MKKWFIKSDNGLTKENFKNNSEFSYITCQLLANRKIDYKNVRNFLYPNYKYLHNPFLMKD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 ++ A+EIL +A I +VGD+D DG +ST + + + NI + +P+R EDGYG Sbjct: 61 LDTAIEILVDAIDNNLHIQIVGDYDQDGNSSTVVLMKGIGFF-TDNISFSIPHRIEDGYG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP------GDTLPA 170 +S +VD A LI+T DNGIS+ E+ S+ I +I+TDHH LP Sbjct: 120 ISKGIVDNAKKNNVDLIITCDNGISAFEVAEYCNSMNIQMIITDHHQVCFDDKGNQILPK 179 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A+AIINP+ DC +P K L G GVAF LM AL FDE L +LL V+ Sbjct: 180 AKAIINPHRIDCEYPFKELCGAGVAFKLMQAL---------FDELGGDENYLIDLLQFVS 230 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPR 290 +GTV DVV L NR +G+ + + K GI L + K+ + LGF LGP Sbjct: 231 MGTVCDVVDLVDENRFFVKKGLEILNSSK-NIGINKLKTEN--EIGKITTTSLGFKLGPC 287 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NAAGRL+ S+GV L L ++ A A +L LN+ RK + ++ E Sbjct: 288 INAAGRLESASIGVELFLEEDENLADNYAKKLIELNEKRKNLTNEAYSRVNLKIKENEYF 347 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMR 409 D + +Y E H+ + GI+A RIK+ +++P + F+ A +G LKGS RSI+G + Sbjct: 348 NDD---IIVIYDNEIHESIAGIVAGRIKDHYYKPTLVFSNAKEEGILKGSARSIEGYDII 404 Query: 410 DALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSD 469 L L+ + GGHAMAAG S++++ + + L ++ D Sbjct: 405 SKLRDFSNLFEKL----GGHAMAAGFSIKKENLDTLRNELNKNSELVL--ENFIEKIKID 458 Query: 470 GPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGP 528 L + + L+ P+G+ PEPLF + + ++G+ + + Sbjct: 459 CSLDFKLLNYNIVDELKLLEPYGKANPEPLFGTKNVEIKCISIIGKNKNVIKLVLSQDSI 518 Query: 529 LLDGIAF-NVDTALWPDN---------------GVREVQLAYKLDINEFRGNRSLQIIID 572 GI F N D + N + + + Y INE+ +S+Q++I Sbjct: 519 EFSGIIFTNFDKYIEYLNEKFKTNDIISKQDNIKNKFIDILYTPVINEYMNTKSIQLLIK 578 Query: 573 NIW 575 +I Sbjct: 579 DIR 581 >UniRef50_C3WKI0 Single-stranded-DNA-specific exonuclease recJ n=4 Tax=Fusobacterium RepID=C3WKI0_9FUSO Length = 852 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 157/586 (26%), Positives = 278/586 (47%), Gaps = 37/586 (6%) Query: 1 MKQ--QIQLRRREVDETADLPAE---LPPLLRRLYASRGVRSAQELERSVKGMLPWQQLS 55 MK+ + L + E L ++ L +R + L Sbjct: 1 MKKNTKWLLENKINYERIFKNKGEKKLDFVIESLIENRNLS------LDTNFDFNPFDLK 54 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++ AV+ ++ A +I + GD+D DG TS +L LA+ LG NIDY +P R ++GY Sbjct: 55 DIDIAVKRIFEAIENNEKIYIYGDYDVDGITSVSLLYLALSELG-GNIDYYIPLR-DEGY 112 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL+ + + A L+++VD GI+S + A LG+ I+TDHH LP A A+I Sbjct: 113 GLNKDAIQSLKEEEANLVISVDCGINSIEEINFANELGLDFIITDHHEIIGDLPKAFAVI 172 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP + + K LAGVG AF L+ AL + L +L + LD+VA+GTVA Sbjct: 173 NPKREENIYSYKYLAGVGTAFMLVYALYSKLDRLN----------DLEKFLDIVAIGTVA 222 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVA---NRDAQKLAASDLGFALGPRLN 292 D+VPL ++NR +G+ + K GIK LL + D ++ + D+G+ + P N Sbjct: 223 DIVPLTSDNRKFVKRGLKLLNNTKW-IGIKQLLRKVFPEDWDTREYCSYDVGYLIAPIFN 281 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 AAGRL+D V+L + ++ E + +L N RK I++ + ++ EK + Sbjct: 282 AAGRLEDAKQAVSLFIEEDGFECLTIIEQLLENNNERKNIQKKILEASIAEIEKKQLYNK 341 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG-DGTLKGSGRSIQGLHMRDA 411 L + + + +H GV+GI+AS+I +++++P I +G S RSI G+++ + Sbjct: 342 NL---ILVANKSFHHGVIGIVASKILDKYYKPSIIMEIKESEGVATASCRSIDGINIVEC 398 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L + + ++K+GGH+ AAG +++ + + F QR + + E L + + Sbjct: 399 LNSVSDI----LVKYGGHSGAAGFTIKIENIEEFYQRVDKYIGENFPKELFVKTIKIENI 454 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLL 530 L+P ++ E + L P+G P+F + R +M++ Sbjct: 455 LAPYKVNYEFLRELEILEPYGAKNHTPIFAFKNCEYENLRFTKNSTEHLMLDIKKDNYYF 514 Query: 531 -DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + I F +++ +A+KL + F+ ++ ++++ Sbjct: 515 KNCIFFGGGDYYDIIANSKKIDVAFKLKLETFKDRYMCKLQLEDVK 560 >UniRef50_D0RNX1 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNX1_9RICK Length = 580 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 177/586 (30%), Positives = 301/586 (51%), Gaps = 26/586 (4%) Query: 3 QQIQLRR--REVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLS 55 ++ L+ + + E L L RL A+R + + + +E + + Sbjct: 9 KEWVLKDFDKNLAEYISKEYNLDFLTSRLLANRNI-NQKNIENFLNPKIKNFLPNPYNFK 67 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 + K +EI+ + +I + GD+D DGATS+ + + L + +P+R +DGY Sbjct: 68 DMGKGLEIISRHIKNKNKICIFGDYDVDGATSSGIMSKYLEQLNIDHF-VFIPDRQKDGY 126 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G S + + LI+ +D G +S +E+ARS I V+V DHH +T PAA AII Sbjct: 127 GPSVKTFTNIINKNVNLIIALDCGTTSFEAIEYARSKNIDVVVIDHHKSQETFPAANAII 186 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NPN D L GV F ++ L LR+ +F++ + PNL +LLDLV +GTV Sbjct: 187 NPNRIDETGDYYYLCAAGVLFIFLVGLNKILRENYYFNKAKVQEPNLLDLLDLVMMGTVC 246 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 DVVPL NR QG+ + + + G+K L++ + +KL+ ++G+ LGP++NA G Sbjct: 247 DVVPLMDLNRAFVHQGLK-VASKRHNLGLKTLVDYSKI-KKKLSTYEVGYVLGPKINAGG 304 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ +G LL +N A ++++EL++LN RK+IE+ + EA+++ E+ + Sbjct: 305 RIGKSELGYNLLTTNNAETAYLISSELESLNLKRKDIEKKIVEEAISISER-----NNDE 359 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + + +WH+G++GI+ASR+K+ F++P + G+ KGS RSI G + A+ + Sbjct: 360 PIVFLSKNDWHEGLIGIVASRLKDHFNKPSFIISQKGED-CKGSARSIFGFDVGMAITKC 418 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L ++ K GGH MA G SL+ DK ++F+ L + L + + D L + Sbjct: 419 KQL--NIITKGGGHPMAGGFSLKSDKLEIFKNELINLFLK-LKKNKDNNIIEIDSYLESS 475 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 + E+ + L P+G EP+F F++ + H+KV++ G +D I+ Sbjct: 476 AINDELIEKLNHLEPYGSGNREPIFGFEKFKVSKVIETKNNHVKVVL--NKGNFYIDAIS 533 Query: 535 FNVDTAL---WPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 FN + N +E L K+ +NE+ G +++IID+I I Sbjct: 534 FNSKNKDLGNYLMNFKKEFNLVAKIKLNEWNGKSKIELIIDDIQLI 579 >UniRef50_Q0API9 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Maricaulis maris MCS10 RepID=Q0API9_MARMM Length = 603 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 178/587 (30%), Positives = 284/587 (48%), Gaps = 28/587 (4%) Query: 3 QQIQLRRREV--DETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLS 55 ++ +LR + +P L R+ A+RGV + + + Sbjct: 25 KRWRLREADDGAVAMMARQQSIPDALARVMAARGVA-PDQAAAFLSPRLRDSFPDPSDFA 83 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++KA ++++A + V D+D DGATS A + R + + VP+R E+GY Sbjct: 84 DMDKAAGLVWDAIEAERPMAVFADYDVDGATSAAQLIRYFRHFDRT-AEIYVPDRVEEGY 142 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 G S D ARGA+L++TVD G ++ + HA S+G+ VIV DHHL D +P A A++ Sbjct: 143 GPSGTAFDTLKARGAELVITVDCGAAARIALTHAASIGLDVIVIDHHLMDDDMPPAAALV 202 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NPN D LA GV F + AL R +G N P+L + +DL ALGT+ Sbjct: 203 NPNRPDDRSGCGHLAAAGVTFVFLAALNREGRRRGTITPDN--EPSLLDWIDLAALGTIC 260 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 DVVPL NR +T QG+ + +G G++ L E + D + + GF +GPR+NA G Sbjct: 261 DVVPLTGVNRAITAQGLKAM-SGWRHLGLRCLAETSGVDG-EASTYHAGFLIGPRINAGG 318 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ +G LL ++ AR +A ELD LN R+ IE + A + R Sbjct: 319 RVGRADLGATLLTTEDETLARRIAGELDGLNSERRAIEADVLEAASAQLDGQSADR---- 374 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG---TLKGSGRSIQGLHMRDAL 412 L WH GV+G++A R+KERF +PVI + KGSGRS+ G+++ A+ Sbjct: 375 AILIAAGEGWHPGVIGVVAGRLKERFDKPVIVIGIDREARPPVGKGSGRSVPGVNLGGAI 434 Query: 413 ERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPL 472 G++ GGHAMA GLS++ D+ E + L + + +DG L Sbjct: 435 AAARE--AGLLTSGGGHAMAGGLSMDPDRITELVAFLDERLAPELAAAADDMALKADGVL 492 Query: 473 SPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLD 531 + + +++++A++L A P+GQ EP F R+ + VG H++ + G +D Sbjct: 493 TASGVSLDLARMLERAAPFGQGNAEPRFALPDMRVSFAKRVGTDHVRFTLSDPD-GRRVD 551 Query: 532 GIAFNVDT----ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 GI F G +L ++ ++G +Q+ ++++ Sbjct: 552 GICFRCADTPIGEALLAAGPGLFHAFGRLKLDAWQGRERVQLHLEDL 598 >UniRef50_B0TAW1 Single-stranded-DNA-specific exonuclease recj n=2 Tax=Heliobacteriaceae RepID=B0TAW1_HELMI Length = 577 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 191/579 (32%), Positives = 287/579 (49%), Gaps = 35/579 (6%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQ---ELERSVKGMLPWQQLSGVEK 59 + + L P L A RG+ A+ + ++ M + + G Sbjct: 1 MRWIF---PSTQQISSYPGLTPFQAALLARRGIGPAEAERFIRSGIEDMYDPRLMKGATA 57 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 A I+ + I V GD+D DG T TAL V ++ LG +++D+ + +RF +G+G+ P Sbjct: 58 AAAIISDTIDRQVPITVYGDYDCDGVTGTALLVESLTKLG-ASVDWYINSRFVEGFGMHP 116 Query: 120 EVVDQAHARG-AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 +++ RG +LI++VDNGIS+ V AR LG+ V++TDHH P + LP A+ I+NP Sbjct: 117 LGIEEIARRGTPRLIISVDNGISAGDAVRRARELGMQVVITDHHEPSEELPPADVIVNPK 176 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 C +P K LAGVGVAF +M L F L LDLVA+GTVADV+ Sbjct: 177 QAGCAYPEKHLAGVGVAFKVMQIL---------FQAAGRPREILRS-LDLVAIGTVADVM 226 Query: 239 PLDANNRILTWQGMSRIRA-GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 P+ NRI G+ I + R G++A+ + AN A LGF GP LNA GR+ Sbjct: 227 PVTGENRIFIKNGLKLINWGNRTRIGLQAIKDAANLKGDVNAHYHLGFIFGPMLNATGRI 286 Query: 298 DD-MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 D + V LLL + A LA +L +N+ R+E+ + ALT + + PG Sbjct: 287 DGVPAAAVELLLTADRHRAAGLAAQLRKVNEERQELTRRQTEVALTQAQ-TKMQGTGAPG 345 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRD-ALER 414 + +Y+P +H+G+VG++ASR+KE +HRPV+A + + G LKGS RS++G +++ ++ Sbjct: 346 FIVVYNPAFHEGIVGLIASRLKEVYHRPVLALTDSHEPGVLKGSVRSVKGFSVKEHLIDG 405 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 L +LK GGH MAAG SL ++ R V + L V D L P Sbjct: 406 CADL----LLKGGGHEMAAGCSLIKENLAALCCRLDAAVHQA-PADLFVPSVGIDYVLEP 460 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 EM + + + P+G FP P F F Q R VG + + G + I Sbjct: 461 KEMDRGLVTQIEEFAPYGAGFPRPNFLLAPFWPEQVRFVGRDGNHLRL----SGQGVIAI 516 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIID 572 FN A N + L +IN++ +RS+Q + Sbjct: 517 GFNQAEAFRKANPQGTLALLGLPEINDY--DRSVQFRLR 553 >UniRef50_Q2RHV6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHV6_MOOTA Length = 911 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 172/566 (30%), Positives = 275/566 (48%), Gaps = 25/566 (4%) Query: 15 TADLPAELPPLLRRLYASRGVRSAQ----ELERSVKGMLPWQQLSGVEKAVEILYNAFRE 70 + P+ ++ +RG+ +A + ++P +++ G+ A E L A + Sbjct: 11 ALARELHISPITAQILINRGITTAAAARAFFQPDPANLIPPEKIPGLPAARERLVQAIEK 70 Query: 71 GTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGA 130 +I+V GD+D DG +TA+ + + LG + +P+R +GYGL + + +A Sbjct: 71 REKIMVHGDYDVDGLAATAIMLETLARLGVE-AEVYLPDRLTEGYGLKKKSLIKALELNC 129 Query: 131 QLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLA 190 QL++TVD GI+S AR G+ +I+TDHH PG +LP A A++N L Sbjct: 130 QLVITVDCGITSLEEAIFAREQGLDLIITDHHRPGTSLPQASAVVN---PLLAPGLPPLC 186 Query: 191 GVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQ 250 G GVAF L +L T F LDLVAL T+AD VPL NR+L Sbjct: 187 GAGVAFKLAQSLATH------FGLAPQGGVAAGWALDLVALATIADAVPLLGENRLLVQL 240 Query: 251 GMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCD 310 G+ + +G RPG+KAL EVA A++ A ++ F L PRLNA GRL + + +LL Sbjct: 241 GLKAL-SGSMRPGLKALAEVAGLPAREWTAREVAFGLVPRLNACGRLGNAMPALEILLTS 299 Query: 311 NIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVV 370 + A LA L NQ R+ +E+ + EA + + GL + WH GV Sbjct: 300 SPQRALELAQRLQEENQARRHLEESIAAEAEAMAVTALAAG---AKGLVLAAEGWHPGVT 356 Query: 371 GILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHA 430 GI+A+R+ E+++ PV+ A GD +GSGRS+ G+++ + R + +L FGGHA Sbjct: 357 GIIAARLVEKYNCPVVLIAVVGD-RGRGSGRSLPGINLHEIFARCRS----YLLSFGGHA 411 Query: 431 MAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGP 490 A GL + + FQ F E+V + EV + + +++ ++ + L P Sbjct: 412 RAGGLEIAAKEIPAFQAAFNEIVKSLMAEVQTPPEVAPEAEVLVSQLDWQLLEELEQLAP 471 Query: 491 WGQMFPEPLFDGHFRLLQ-QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVRE 549 +G+ P P+ L++ R VG + + G G + I FN+ + Sbjct: 472 FGEGNPRPVLVTRRALIKAARQVGRDGAHLKLTAGGEGREIGAIGFNLS-LPPGLSPGHH 530 Query: 550 VQLAYKLDINEFRGNRSLQIIIDNIW 575 V LA+ L+ N +R LQ+ + + Sbjct: 531 VDLAFYLERNTYRDREELQLRLVALK 556 >UniRef50_Q137L0 Exonuclease RecJ n=91 Tax=Alphaproteobacteria RepID=Q137L0_RHOPS Length = 633 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 187/580 (32%), Positives = 299/580 (51%), Gaps = 17/580 (2%) Query: 4 QIQLRRREVDETADLPAELPPLLRRLYASRGVR---SAQELERSVKGML-PWQQLSGVEK 59 ++ R + +LP +L R+ A RGV L+ +++ ++ ++ +E Sbjct: 51 RLDPRGTAKAQAIAQRYQLPEMLARVIAGRGVEIDAVPDFLDPTIRKLMPDPSSVTQMEA 110 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 + + +A + + + GD+D DGATS AL +R G + +P+R +GYG + Sbjct: 111 GAQRIADAAMKRETVAIFGDYDVDGATSAALLTWHLRHCGLDPL-IHIPDRIFEGYGPNV 169 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 + + +GA L++TVD G +S + AR LG+ V+V DHH GD LP EA+INPN Sbjct: 170 DAIRGLSEKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQCGDELPEVEALINPNR 229 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 D LA VG+ ++A+ LR +G++ + PNL ++L VALGTVADV P Sbjct: 230 PDDLSGLGHLAAVGLVMMTLVAVNRELRHRGFWTVE-LPEPNLLDMLHHVALGTVADVAP 288 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 L NR +G+ +R + G AL++VA + LGF LGPR+NA GR+ Sbjct: 289 LIGLNRAFVAKGLIALRR-RDHVGHTALMDVARLNGPP-DVFHLGFMLGPRINAGGRIGR 346 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 +GV LLL ++ EA +A ELD LN R+ IEQ + + + + Sbjct: 347 ADLGVRLLLEGDVSEAARIAAELDRLNTERRVIEQMAEAQ-AEAEAMASLGLEDKGAVIV 405 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 WH GVVG++ASR+KE+F RP A A G GSGRSI G+ + A+ + Sbjct: 406 TASEGWHPGVVGLVASRLKEKFGRPAFAIALEPGGIGTGSGRSIGGVDLGRAVR--RAVS 463 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 G+++K GGHAMAAG++L +++ F+ + + S E++ DG +S +T Sbjct: 464 EGLLMKGGGHAMAAGVTLRKERLAEFRGWLETALAADVAKSRHINELLIDGAVSARGVTT 523 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD 538 E A L AGP+G PEP+ +L+ VG+ HL++ + G G +++GIAF Sbjct: 524 EFAATLNRAGPFGAGNPEPVIALPAHQLIYADEVGQAHLRLRFK-SGDGAIVNGIAFRSV 582 Query: 539 ----TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +N + + +A L I+ ++G +Q+ + ++ Sbjct: 583 GQKLGQALTENRGQSLHVAGSLSIDRWQGAERVQLRVIDV 622 >UniRef50_Q6MEM6 Putative ssDNA-specific exonuclease n=2 Tax=Parachlamydiaceae RepID=Q6MEM6_PARUW Length = 594 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 165/574 (28%), Positives = 286/574 (49%), Gaps = 25/574 (4%) Query: 9 RREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEIL 64 + E+ +L P++ ++ SRG S Q++ + + ++ + +AVE + Sbjct: 19 DEALKESIVKEFKLHPVIAQILVSRGFTSFQQIHDYLYAKLPELHDPFLMAEMPQAVERV 78 Query: 65 YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124 A R+ I++ GD D DG T T L ++ LG +N+ + V NR L E ++ Sbjct: 79 CRAIRDHENILIYGDNDVDGMTGTTLLTEFLQDLG-ANVFFYVSNRGALRQSLIVEALEY 137 Query: 125 AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNF 184 A +L++TVD GI++ + + + VI+TDHH P D +P A +NP L + + Sbjct: 138 ALINNCKLLITVDCGITAAVEIAKVAAQNVDVIITDHHEPTDKIPHCVATLNPKLVNNPY 197 Query: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA-N 243 P++ L GVGVAF L + L +G I +L + LDLVALGT++D+ L Sbjct: 198 PNRDLTGVGVAFKLAHGITNQLTSEGKIPPSKI---DLKKYLDLVALGTISDMGSLLDTE 254 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NRIL G+ ++R GK R G+ L + + D L + + PRLN+ GR+ D G Sbjct: 255 NRILVRYGLRQLRKGK-RMGLAKLFSICDVDLNDLNTFTIASKIAPRLNSLGRIADPRKG 313 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 V +LL N A +A ELD N R++IE+ M + + +++ + M Sbjct: 314 VQMLLVKNADLAEKMALELDLNNIERQKIERTMSSDVDSTIQQIPAI--LSNKAIVMVSD 371 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMM 423 +WH GV+ IL++RI ++++RP + A G KGS RSI+ + L+ + + Sbjct: 372 KWHPGVIAILSTRISKQYNRPTVMIAIDK-GIGKGSIRSIREFPLLPTLKECSDI----L 426 Query: 424 LKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483 + FGGH AAGL+++E+ + F+ F + L + + ++ D + +E+T + + Sbjct: 427 INFGGHDFAAGLTIKEEHVEQFKNHFIASANKKLADTDVMSKLYLDAEIKFSELTFDFIE 486 Query: 484 LLRDAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALW 542 R P+G P+P+ + ++VG+ HLK+ +E G +L+G+A T Sbjct: 487 SARLLEPYGNENPQPILYCDAWQTWPPKIVGKTHLKLYLE--QGDRVLEGVALGKATYSQ 544 Query: 543 PD-NGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 ++++A+ IN S+Q++I + Sbjct: 545 QLRKKNLKLRIAFTPQIN----KSSIQLLIRDFK 574 >UniRef50_Q04F00 Single-stranded DNA-specific exonuclease n=1 Tax=Oenococcus oeni PSU-1 RepID=Q04F00_OENOB Length = 622 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 166/580 (28%), Positives = 279/580 (48%), Gaps = 45/580 (7%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRS----AQELERSVKGMLPWQQLSGVE 58 + ++ + + L L + A R S + ++ +L +E Sbjct: 8 WFKRQTDKQFIQKIEQHFSLDRLTSTVLAGR-FSSVPLIEDFFSSDLNKLVDPSRLDQIE 66 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 + L +A +I + GD+DADG TST++ + ++ LG + +DY +PNRF DGYG + Sbjct: 67 LLKKRLISAIDNQEKITIYGDYDADGITSTSILLKTLQILG-ARVDYFIPNRFRDGYGPN 125 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 V Q G +LI VDNGIS V+ A + V++ DHH LP A+AII+P+ Sbjct: 126 KFVYQQLIDTGTKLIFAVDNGISGFDAVDLANRNQVDVLIADHHQLPKKLPNAKAIIHPD 185 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 L D ++P K+L+ G+AF + L + + +F LVA+G +ADV+ Sbjct: 186 LSD-DYPFKNLSAAGIAFKVSKYLLGTQKARQFFP--------------LVAIGEIADVM 230 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NRIL G+ I++G+ G++ +++ A+ + L A D+ F + PRLN+ GR+ Sbjct: 231 PLINENRILIQTGIDLIKSGE-NKGLQEVIKRADLKLESLTAQDIAFKIAPRLNSLGRMA 289 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 D +GV LL D+ + +A +++ LN+ R++ + A E + + Sbjct: 290 DAGIGVELLTTDDSDKVSEIAKQVEHLNKQRQKEADKIYRIASRQVSPQENN------II 343 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + WH+G++GI+A R+ F RP + F+ +G KGS RS + L+R L Sbjct: 344 IVSGENWHEGIIGIIAGRLSAYFGRPAVVFS-VKNGIAKGSARSTGDFDLYKVLDRARDL 402 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 Y + FGGH AAGLSL+ + D G + D + +++ Sbjct: 403 Y----ISFGGHKQAAGLSLKASDLDRLDKILNAD-----DYHFSVGRLAIDAVIKAEDLS 453 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAF 535 ++ + L P+G+ PEP+FD L+ R++G ++H K+ V G D + F Sbjct: 454 IDSFKQLSKLAPFGEGNPEPIFDLDDVELVNLRILGSDKKHFKLKVNGFSG----DILFF 509 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 N + + + L +NE++ +SLQII +I Sbjct: 510 NRPDLIGKLQLGERLSIVGTLSLNEWKHRQSLQIIGKDIR 549 >UniRef50_C3CT94 Single-stranded-DNA-specific exonuclease recj n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CT94_BACTU Length = 573 Score = 523 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 165/588 (28%), Positives = 301/588 (51%), Gaps = 43/588 (7%) Query: 3 QQIQ----LRRREVDETADLPAELPPL---LRRLYASRGVRSAQELERSVK----GMLPW 51 + I+ + RR + EL L + + +RG + +++E + M Sbjct: 8 KWIRPENTVERRGKLQDLRNAKELNHLADCVLEILYNRGFDTIEKIESFLHMDITDMHNP 67 Query: 52 QQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRF 111 Q + +KAV +L +A + I+V GD+D DG ++T+++VLA+R+LG + + Y V NRF Sbjct: 68 QLMKDSDKAVSLLSHAIKNNLHIVVYGDYDCDGVSATSVAVLALRNLG-AKVSYFVNNRF 126 Query: 112 EDGYGLSPEVVDQAHAR--GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLP 169 + GYG++ ++ + +++TVDNGI ++ G++ A+ LG+ VIVTDHH PGD LP Sbjct: 127 KHGYGMNVLGLEDMMKKYPDVDVVLTVDNGIVAYEGIKKAKELGLTVIVTDHHDPGDHLP 186 Query: 170 A-AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDL 228 A+A++NP DC +P K L G V + +ML L L + + +++D+ Sbjct: 187 EEADAVVNPKRHDCEYPFKGLCGASVIYKVMLQLYWELDKDLDY---------VQDMIDI 237 Query: 229 VALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALG 288 V + TV D++PL NR+ + + +++ + R K L E +++ GF Sbjct: 238 VGIATVGDIMPLIDENRVFVTESIRQVKRAQ-RHVFKVLQEKTGV--KEITEETYGFKYV 294 Query: 289 PRLNAAGRL-DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKL 347 P +NA GR+ D+ + + + + + + ++ N+ RK+I + + A+ + E+ Sbjct: 295 PMINALGRITGDVDEAIEMFVSQDEEKIPEIVEKVIETNEYRKQITEEQEALAIQMVEE- 353 Query: 348 ERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLH 407 + + +YHP +H+G+VG++A R+KER+ RPVI A G G +KGS RSI H Sbjct: 354 ----KGIKPVIVIYHPSFHEGIVGLIAGRLKERYFRPVIVLA-EGHGFIKGSARSIPNFH 408 Query: 408 MRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV 467 ++ A + ++ +GGH MA GLSL+E+ + F+++ L L + ++ Sbjct: 409 IKKAFDETKE----YLIGYGGHPMAGGLSLKEEHLEAFEEKICSLAESQLTEADFIPRIM 464 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGG 526 D + P ++T+++ + L P+G+ F +P F F++ + +GE + ++ Sbjct: 465 VDTVVEPKDVTVDLVEELDVLKPFGEAFSKPNFGLKGFKVDKVYYMGENKNHLKLKEKK- 523 Query: 527 GPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 L+ I FN R ++ +N + N S+Q I+ I Sbjct: 524 ---LEIIMFNRADIYQEMQEPRNIKALGYPSLNIWNNNVSVQFNIEGI 568 >UniRef50_A4E7W6 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7W6_9ACTN Length = 1095 Score = 523 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 176/580 (30%), Positives = 293/580 (50%), Gaps = 30/580 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV-----KGMLPWQQLSG 56 + + + E+++ +P L+ R+ + G+ S +E + + + + G Sbjct: 9 RWAVAQQNPELEKELSAGLGIPGLVARIMVAHGIGSIKEGQLFLTPSLDRDWADPLIIPG 68 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + + + A R I V GDFD DG TST L A+R+ G +++ +P RF++GYG Sbjct: 69 MSVVADRVERAIRNHEHIAVFGDFDVDGITSTCLLTEALRTFG-ADVTPFIPRRFDEGYG 127 Query: 117 LSPEVVDQAHA-RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 LS +D+ + QLIVTVDNGI++ V + +SLGI ++VTDHH P D +P + Sbjct: 128 LSRAALDRVNELARPQLIVTVDNGIAAKEEVSYLKSLGIDLVVTDHHEPSDQVPQGVPLT 187 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 +P L D + PS+ LAG GVA L+ L L ++ L+++ ALGTV+ Sbjct: 188 DPKL-DDDGPSRELAGAGVALKLVQVLGERLGKPSYW----------RSLIEVAALGTVS 236 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 D++PL NR L +G+ ++R RPG AL +A D + A L F+L PRLNAAG Sbjct: 237 DMMPLTPENRALVAEGIQQMRVT-ARPGYIALAALAKADLSSITADGLSFSLIPRLNAAG 295 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ D + + LLL + EA LA EL+ +N+ R+EIE + +A+ E+ Sbjct: 296 RMADPKLALDLLLARDPIEASALAAELEEINRQRREIEAELTRDAMAKVEETYDGG---- 351 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + + WH+GV GI+ASR+ R+H P + F+ DG +GSGRS+ +++ DA+ER Sbjct: 352 RAIVVGGEGWHEGVKGIVASRLTNRYHVPALLFSI-EDGIARGSGRSVGKVNLFDAIERC 410 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L M++ GGHA A G+++E K F++R +++E L + + + Sbjct: 411 SDL----MIRRGGHAGAVGVTIEASKLDEFRRRLSVVLSE-LPAEDFEDTDEVAATVDLS 465 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 E+ +E + + P+GQ PL + + +VG+ + G + I Sbjct: 466 ELNIETIEQISRLEPFGQGNKVPLLAAEGVTMCDRAVVGKTGEHMRFVATDGAASVPAIM 525 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 F V N V L ++ ++G ++++ ++ Sbjct: 526 FRVPQIDKLINCDSAVDLVFEAVAEHWQGRVKPKLMVKDV 565 >UniRef50_UPI0001BC5E35 single-stranded-DNA-specific exonuclease recJ n=3 Tax=Fusobacterium RepID=UPI0001BC5E35 Length = 842 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 165/581 (28%), Positives = 291/581 (50%), Gaps = 33/581 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA 60 M+ + + + + ++ + R + +E L ++KA Sbjct: 1 MRNTKWIYQNYQYYPQEKEETIHSIVYSIMKERNLSYRKEF------TSNPYLLKDMDKA 54 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 V +L A ++ + + GD+D DG TS +L LA+ LG ++Y +P R ++GYGL+ E Sbjct: 55 VHLLQEAKKKQQTVWIYGDYDVDGITSVSLCYLALTELGYP-VEYYIPLR-DEGYGLNQE 112 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 + + +G ++++TVD GI S V+ A SLG+ +I+TDHH LP A A+INP Sbjct: 113 ALQYIYEQGGRIVITVDCGIVSVKEVDFANSLGMTMIITDHHEIQGELPKAAAVINPKRE 172 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 + +P SLAGVG AF+L+ AL + + + D+VALGTVAD+VPL Sbjct: 173 ENLYPFPSLAGVGTAFFLVTALFEQEGKR----------EEIQKYFDIVALGTVADIVPL 222 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVA--NRDAQKLAASDLGFALGPRLNAAGRLD 298 +NRIL QG++ + + G++ L++ + + ++ +A D+GF L P NAAGRL+ Sbjct: 223 VEDNRILVQQGLALLAKSQW-TGLRILVKRLFPDYETRRFSAYDIGFILAPIFNAAGRLE 281 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 D V L L + +A + L N R+ +++ + E++++ + L Sbjct: 282 DAKSSVKLFLEKDSKKANAQIDSLIQNNMERRRVQEKILQAC---LEEIQQKKLEEKNAL 338 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERLDT 417 + +H GV+GI+AS++ +RF++P I +G S RSI G+++ +AL + Sbjct: 339 VIAREGFHHGVIGIVASKLVDRFYKPSIVMEIKPEEGIATASCRSISGINIVEALGEISP 398 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 L +L++GGH+ AAG S+ + F + F ++++ + LL ++ L P ++ Sbjct: 399 L----LLRYGGHSGAAGFSILIENISTFYEEFEKVLSRKVTEELLAKKLSITKELLPFQI 454 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIA 534 + +R P+G P P+F RL + RL+G ++HL + G + + Sbjct: 455 QYPLLHDMRYLEPFGASNPAPIFALKHCRLDKIRLIGADKKHLMCNIHH-GDTVFWNCVW 513 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 F +EV +A+ L + +RG +I I++I Sbjct: 514 FQASDVYEELLFAKEVDIAFHLKLEMYRGRYQYKIFIEDIQ 554 >UniRef50_A8F1S2 Single-stranded-DNA-specific exonuclease RecJ n=18 Tax=cellular organisms RepID=A8F1S2_RICM5 Length = 608 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 187/585 (31%), Positives = 285/585 (48%), Gaps = 26/585 (4%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV-----KGMLPWQQLSGV 57 Q +L ++ ++ LL R+ + R V + +E+E + + L + Sbjct: 33 WQQKLINEDIVTELCRSFKISDLLARIVSLR-VNNLEEVENFLIPKIKNLLPDPFHLLDM 91 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 EKAV+ A +I + D+D DGATS AL R L D VP+R +GYG Sbjct: 92 EKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILC-DIYVPDRIAEGYGP 150 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 +P + + G +L++TVD G +H +++A+ + + VIV DHH+ + LP A AI+NP Sbjct: 151 TPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHIATEILPDAVAIVNP 210 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 N D K LA VGVAF A+ + L+ Q +F + + PNL + LDLVALGTV D+ Sbjct: 211 NRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTML-QPNLMKYLDLVALGTVCDM 269 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 + L NR G+ ++ + GIK L ++A + LGF LGPR+NA GR+ Sbjct: 270 MKLTGLNRAFVASGLKIMQQRQ-NIGIKTLYDMAGLNEIP-KCYHLGFILGPRINAGGRV 327 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 S+G LL EA LA EL+ N RK IE M EA+ + + S Sbjct: 328 GKSSLGANLLSTSCSNEANKLAEELEKHNNERKVIELLMIEEAMEIALTQQDSSL----- 382 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 L + WH GV+GI+A ++KE+F +PV A DG K S RSI G+ + + Sbjct: 383 LFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIAL-NDGIGKASCRSILGIDFGAEIINAKS 441 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 +++ GGHAMAAG ++ DK + Q F ++ D L+ + Sbjct: 442 K--DLLIAGGGHAMAAGFTVTADKLQELQNFFNNAFRISINKLENYKHAEYDIELTVNSV 499 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVG---GGPLLDGI 533 + + L P+GQ EP+F +L+ +VG +H+K M+ P G L I Sbjct: 500 NFPLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALSAI 559 Query: 534 AFNVDTALWPD----NGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 AFN + D + + + L N ++GN ++Q+II +I Sbjct: 560 AFNSVGTAFEDVLLSSKAKNIAAIGTLKTNNWQGNYTIQLIIKDI 604 >UniRef50_A8UBS7 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Carnobacterium sp. AT7 RepID=A8UBS7_9LACT Length = 699 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 171/510 (33%), Positives = 250/510 (49%), Gaps = 33/510 (6%) Query: 67 AFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH 126 A + + G TSTA+ + +G ++Y +PNRF DGYG + ++ Sbjct: 6 AIASKDYLSLY------GVTSTAVLKETIEMIGGE-VNYYIPNRFTDGYGPNTAAFERLI 58 Query: 127 ARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPS 186 +G QLI+T DNG+S H ++ A+SLGI VI+TDHH DTLP A A+I+P ++P Sbjct: 59 EQGTQLILTCDNGVSGHTAIDRAKSLGIDVIITDHHELPDTLPDAYAVIHPRHPKGSYPF 118 Query: 187 KSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRI 246 LAGVGVAF L AL + ELLDLVALGT+AD+V L NR Sbjct: 119 GELAGVGVAFKLATALLGEIP---------------IELLDLVALGTIADLVLLTNENRA 163 Query: 247 LTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVAL 306 L QG+ ++ + R G+ AL + A +++ +GF + PRLNA GRL D + V L Sbjct: 164 LVKQGLLVLKNTQ-RMGLTALFKSAKIKREEIDEETIGFIIAPRLNAVGRLGDAAPAVEL 222 Query: 307 LLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWH 366 L + A LA + N R+ + EA + EKL + D + WH Sbjct: 223 LTTFDDETALALAQLVQEKNTERQAYVSTITNEAFEMIEKLPTASD----VYVLAKEGWH 278 Query: 367 QGVVGILASRIKERFHRPVIAFAPAG-DGTLKGSGRSIQGLHMRDALERLDTLYPGMMLK 425 +GV+GI+AS+I + +P + G KGSGRSI H+ +AL+ + L Sbjct: 279 EGVLGIVASKIVGKTGKPTLVMTIDNAKGLAKGSGRSIAAFHLYNALDSVRQLT----TT 334 Query: 426 FGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLL 485 FGGH MAAGL++ + L Q E L E+ DG L E T+EV + L Sbjct: 335 FGGHHMAAGLTVPIENIALIQDNLNHYAAETGLSEELGEEIQVDGQLKIQEATVEVVEEL 394 Query: 486 RDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPD 544 P+G +PLF + R +G + ++ V LD I F + Sbjct: 395 NRLAPFGTDNLKPLFLFKNVESQDVRRIGGDQAHLKMKLVEDNAFLDVIGFQFGSVADEI 454 Query: 545 NGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 +V + KL INE+ G+R Q++++++ Sbjct: 455 GLYSDVSVVGKLAINEWNGSRKTQLMLEDL 484 >UniRef50_C2KX60 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Oribacterium sinus F0268 RepID=C2KX60_9FIRM Length = 571 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 156/587 (26%), Positives = 283/587 (48%), Gaps = 34/587 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG--MLPWQQLSGVE 58 MK+ ++ + L P+L R+ +R + + +E+ ++G + L Sbjct: 1 MKKWFVYGKKADFQELGEKLSLDPVLVRILRNRDLTTEEEMRNFLEGEEIPSPLFLPDSI 60 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLG-CSNIDYLVPNRFEDGYGL 117 + + L A +EG ++ +VGD+D DG ++ + A+ + ++P+R DGYG+ Sbjct: 61 RFLNRLERAMKEGEKVRIVGDYDVDGVCASTILAKALSLFFSKEQLSVVIPHRILDGYGI 120 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP------GDTLPAA 171 + +++++A A G L++T DNGIS+ + +E A+S G+ V++TDHH +P A Sbjct: 121 NEQIIEEAKAEGISLLITCDNGISAFSAMEKAKSYGMDVLLTDHHDLRRDEDGKKRIPEA 180 Query: 172 EAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 A++NP +P++ + G V + LM L +R + L EL + Sbjct: 181 FAVVNPKREGSKYPNEEICGAMVCYLLMKMLLE---------KRQKGLELLEELACFAGI 231 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR-DAQKLAASDLGFALGPR 290 TV DV+PL NR++ ++ ++ + G++ALL+ + Q++++ LGF +GP Sbjct: 232 ATVCDVMPLQKENRVIVKYCLTHLQKTQ-NIGMQALLKQCHILPEQEISSYTLGFQIGPC 290 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NA GRL+ + ++L L ++ G+A A L LN+ RKE+ + EA L E Sbjct: 291 INAGGRLESAMLALSLFLEEDEGKAEEKAAHLLVLNEERKEMTKKGVDEAKALAE----- 345 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRD 410 ++ L + P+ H+ + GI+A RI+E ++RP DG+ K SGRSI G M + Sbjct: 346 QEGDVPLLFLVLPDLHESLAGIVAGRIREAYYRPCFILTNGEDGSCKASGRSIPGYPMAE 405 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 LE L +L+FGGH MAAG S+ ++ ++ + L L+ +V D Sbjct: 406 RLEEQKEL----LLRFGGHPMAAGFSVTKENVPGLKKALLQNAR--LQAEDLEEKVWIDV 459 Query: 471 PLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLL-QQRLVGERHLKVMVEPVGG-GP 528 L + + + + L P+G+ +P F LL ++VG+ + + G Sbjct: 460 VLPFSYLKEDFVRSLSRLEPFGRGNEKPAFAQKNVLLKDFKIVGKNKNAIKLYLEDEQGT 519 Query: 529 LLDGIAFNVDTALWPDNGVR-EVQLAYKLDINEFRGNRSLQIIIDNI 574 ++G+ F R + L Y I + + LQ+++ Sbjct: 520 RVEGVLFEDGEKFLNKKSSRNKFNLLYYPKIQVYNNIKQLQVVVSEY 566 >UniRef50_A5TTL1 Recombination protein J n=7 Tax=Fusobacterium RepID=A5TTL1_FUSNP Length = 844 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 157/586 (26%), Positives = 278/586 (47%), Gaps = 37/586 (6%) Query: 1 MKQ--QIQLRRREVDETA---DLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLS 55 MK+ + L + E +L ++ L +R + L Sbjct: 1 MKKNTKWLLENKTNYEKIFEDKREKKLDFIIEDLIENRNLS------LDTNFDFNPFDLK 54 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGY 115 ++ A + ++ A + +I + GD+D DG TS +L LA+ L +N++Y +P R ++GY Sbjct: 55 DMDIATQRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLALSEL-SANVNYYIPLR-DEGY 112 Query: 116 GLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 GL+ + + A L+++VD GI+S + A L + I+TDHH +P A AII Sbjct: 113 GLNKDAIQNLKNENADLVISVDCGINSIEDINFANELNLDFIITDHHEITGDIPKALAII 172 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP + + K LAGVG AF L+ AL + +L + LD+VA+GTVA Sbjct: 173 NPKREENIYSFKYLAGVGTAFMLVYALYIKMNKLN----------DLEKYLDIVAIGTVA 222 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVA---NRDAQKLAASDLGFALGPRLN 292 D+VPL ++NR +G+ +R K GIK LL N D ++ A D+G+ + P N Sbjct: 223 DIVPLISDNRKFVKRGLETLRNSKW-IGIKQLLRKIFPDNWDTREYFAYDIGYIIAPIFN 281 Query: 293 AAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD 352 AAGRL+D V L + ++ + +L N RK I++ + ++ EK + Sbjct: 282 AAGRLEDAKQAVTLFIEEDGFRCLSIIEKLLENNIERKNIQKKILEMSIIEIEKKQLYNK 341 Query: 353 TLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAP-AGDGTLKGSGRSIQGLHMRDA 411 L + + + +H GV+GI+AS+I +++++P I +G S RSI GL++ + Sbjct: 342 NL---ILVANKSFHHGVIGIVASKILDKYYKPTIIMEIKENEGIATASCRSIDGLNIVEC 398 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L + + ++K+GGH+ AAG +++ + + F QR + E D L ++ + Sbjct: 399 LNSVSDI----LVKYGGHSGAAGFTIKIENIEEFYQRIDSYIEENFDKDLFIKKLKIEKI 454 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPLL 530 L+P ++ E + L P+G P+F + R +M++ G Sbjct: 455 LAPYKVNYEFLKELEILEPYGAKNHTPIFAFRNCQYENLRFTKNSTEHLMLDIKKDGYNF 514 Query: 531 -DGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + I F + + + +A+KL + F+ ++ +++I Sbjct: 515 KNCIFFGGGDYYDIISSSKNIDIAFKLKLEIFKDRYMCKLQLEDIK 560 >UniRef50_A5EVF0 DNA exonuclease RecJ n=2 Tax=Cardiobacteriaceae RepID=A5EVF0_DICNV Length = 556 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 187/555 (33%), Positives = 296/555 (53%), Gaps = 20/555 (3%) Query: 18 LPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 P + L+R +YA+R V + +E+ + ++ +LP + +EKA + L A + I++ Sbjct: 15 FPKDWHALVRAIYAAR-VDNPEEVAKPLRALLPPDSVPDIEKAAQRLLTAIVQRESILIF 73 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DGAT+TAL V + LG +DY +PNR GYGL+ + L++TVD Sbjct: 74 GDYDVDGATATALCVSVIEQLG-GKVDYFIPNRQRHGYGLTVRGLKTLSTL-PALVITVD 131 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 NGI S E ++ + +++TDHH TLP A+A++NPN ++ ++ +L+GVGVAFY Sbjct: 132 NGIRSFEAAEWLQAHNVALVITDHHQTDTTLPRAQAVVNPNRQEHHY-LGNLSGVGVAFY 190 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 ++L LR W+ + +L LDLVALGTVAD VPLD NNRIL G++R+R Sbjct: 191 VLLMLRRL-----WYQQFGNFPVDLNSYLDLVALGTVADKVPLDRNNRILVAHGIARMRT 245 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 G+ GI+AL+ V+N+ + + D+ F+L P LNA GRL +MS GVALLL + A Sbjct: 246 GQSNLGIQALIAVSNQTPEMMTTRDIDFSLAPILNAVGRLSEMSEGVALLLSADWQTACD 305 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 A L+ N++RK + M+ +A + + Y +WH+G++GI+A+R+ Sbjct: 306 NAQYLERFNRSRKALTNEMERQAALQI-------NPDAVIASAYQADWHEGIIGIVAARL 358 Query: 378 KERFHRPVIAFAPAGDGT-LKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLS 436 + RP + + DG +KGS RSI G+ + L P ++FGGHAMAAG + Sbjct: 359 SQTLARPALVATQSDDGLGIKGSMRSIAGVDIHRLLIAAVADLPSDCIQFGGHAMAAGFT 418 Query: 437 LEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 + ++ + L + + + + + D L + + A L + PWG FP Sbjct: 419 VLKECYPLLLTALKQHFERQIGARVPEQPLYFDAELPIDLLQLSWAHFLENLEPWGAGFP 478 Query: 497 EPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKL 556 P F F + R +G H ++++ G L D F V++ Y+L Sbjct: 479 PPQFCNRFIVADCRALGAGHTRLVLREPINGQLFDATWFFHKE---DLPSGTAVKVVYQL 535 Query: 557 DINEFRGNRSLQIII 571 +IN F G+ L ++I Sbjct: 536 EINRFFGDERLNLLI 550 >UniRef50_UPI0001C31CC5 single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CC5 Length = 846 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 187/582 (32%), Positives = 278/582 (47%), Gaps = 32/582 (5%) Query: 3 QQIQLRRREVD--ETADLPAELPPLLRRLYASRGVRSAQELERSV--KGMLPWQQLSGVE 58 ++I+L + E L ++ RG + + G++ Sbjct: 4 RRIELAPCDPAAVEALRAALGCSRTLAQVLVRRGHADPAAARAFLAATDAHDPGEFGGID 63 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 AVE + R GTRI V GD+D DG STA+ + A+R LG ++ D+ +P+R +DGYGL+ Sbjct: 64 VAVETILGHVRAGTRITVHGDYDVDGVCSTAILLRALRQLG-ADADWFLPSRIDDGYGLA 122 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP--GDTLPAAEAIIN 176 V++ ARG +L++TVD I++ V AR+ GI V+VTDHH P LP A I++ Sbjct: 123 ATTVERLAARGTRLLITVDCAITAVEEVAAARAAGIDVVVTDHHQPRADGRLPDA-PIVH 181 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P++ +P L GVA+ L AL + LDLVAL TVAD Sbjct: 182 PSISG--YPFPDLCAGGVAYKLAQALHR---------AAGGDPARADDDLDLVALATVAD 230 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 +VPL NR L +G+ + A +PG++AL+ VA D L A +G+ L PR+NAAGR Sbjct: 231 LVPLRGENRRLVREGLRAL-ASTAKPGLRALMRVARVDPSGLDAGAVGYRLAPRINAAGR 289 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 L GV LLL D+ A +A+ELDA N R+ EQ + EA +L Sbjct: 290 LYRADAGVELLLTDDEARATAIADELDAANAERRMTEQRILWEAEEQVRELG-----ERP 344 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERL 415 + WH GV+GI+ASRI ER +RP + A D G+ GSGRSI+ + AL Sbjct: 345 AYVLAGEGWHPGVIGIVASRIVERTNRPALLIALDPDTGSGTGSGRSIRAFDLLGALHAA 404 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 L + ++GGH AAGL++ + ++ F L P L D + Sbjct: 405 APL----LERYGGHRAAAGLTIAAGRVAQLREAFEAHAASVLSPEDLVPVERVDALVGGR 460 Query: 476 EMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 + +E+A+ L P G P P L L+ R +G+ GG +A Sbjct: 461 ALGLELAEELARLEPCGMGNPRPNLLVPAAHLVDVRPMGQEGRHARFSVEAGGTRCRAVA 520 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 F+ D L P + ++L+ NE+ G ++++ + P Sbjct: 521 FSCDGRL-PVDEQTPADATFRLERNEWNGAVEPRLLLRHATP 561 >UniRef50_A1VF80 Single-stranded-DNA-specific exonuclease RecJ n=10 Tax=Desulfovibrionaceae RepID=A1VF80_DESVV Length = 580 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 198/589 (33%), Positives = 295/589 (50%), Gaps = 32/589 (5%) Query: 1 MKQQIQLRRR----EVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQ 52 MK+ I + + LL RL RG+ S Q+++ + + P + Sbjct: 10 MKRWIYRPEVEGALPPSASLAERLGISDLLLRLLLRRGLSSVQDMDVYLSPQLRHLAPLE 69 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFE 112 + G+ +A ++ G V GD+D DG TSTAL + G ++ + +P+R Sbjct: 70 EWPGLAEAAGVITAGITAGMPFAVWGDYDVDGVTSTALVHDVLEFHGV-DVRHHLPDRRA 128 Query: 113 DGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAE 172 +GYGL+ E +++ A G +L++TVD GIS + AR LG+ V+V+DHHLP + LP A Sbjct: 129 EGYGLNVEWIERLAADGVRLLLTVDCGISDVVPISRARELGMTVVVSDHHLPPEVLPPAH 188 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 AI NP L C P +LAGVGVAF++M A+ L ++ ++ E+LDLVALG Sbjct: 189 AICNPRLACC--PCPALAGVGVAFFVMAAVNAALGERSG------RRYDMREVLDLVALG 240 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ-KLAASDLGFALGPRL 291 T+ADVV L NRIL G+ +I + RPG+ AL VA + L A + F L PR+ Sbjct: 241 TLADVVDLGGQNRILVKNGLLKIAEAR-RPGMAALKAVAGYNPSASLGAGQVVFGLAPRI 299 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NAAGRL + + + LL N GEA LA LDA+N R+ E + EA E SR Sbjct: 300 NAAGRLGEAEMALQLLRARNHGEAAQLAQRLDAMNTDRRVEEDRILEEAKRQAESQAASR 359 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 G ++ +WH GV+GI+ASRI E ++RP + G+ TLKGSGRS+ + Sbjct: 360 ----MGFVLHGEDWHPGVIGIVASRIVEAYYRPTLILCTEGE-TLKGSGRSVSEFDLHAG 414 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 L + L+ G FGGH AAG+SL+ ++RF +V + L + L + DG Sbjct: 415 LSQCADLFLG----FGGHRQAAGMSLKTSALDALRERFDTVVRQALGDTPLTASLKLDGD 470 Query: 472 LSPAEM-TMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ-QRLVGE--RHLKVMVEPVGGG 527 L V + L P+G EP+F L++ R G+ H+++ + G Sbjct: 471 LGFEHASDFTVLKELEMLQPFGTGNAEPVFASPPLLVRGLRRFGKAREHVELELTDESCG 530 Query: 528 PLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 L A+ ++LAY I+ + G S+ + I + P Sbjct: 531 VTLHAKAWRQSGEFSDRLRGTRIRLAYTPRIDRYSGAASVDLRIRDWQP 579 >UniRef50_Q1GEL8 Single-stranded-DNA-specific exonuclease RecJ n=45 Tax=Alphaproteobacteria RepID=Q1GEL8_SILST Length = 603 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 187/585 (31%), Positives = 291/585 (49%), Gaps = 35/585 (5%) Query: 3 QQIQ---LRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQL 54 ++ + + E LPP + ++ A RGV A E + + +++ Sbjct: 36 RRWVGPGVDQARASEHLAQETGLPPAVCQVLARRGVP-AHEATGFLTPQLKDLLPDPRRM 94 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +E A A RI + D+D DG +S AL ++ +R +G +P+R ++G Sbjct: 95 KDMETAAARFLQAVERRERIAIFADYDVDGGSSAALLLVYLRQMG-QQATLYIPDRIDEG 153 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG + + R LI+ VD G SH + A+ G V+V DHHL G+TLP A+ Sbjct: 154 YGPNDAAMAALA-RDHDLIICVDCGTLSHGPIAAAK--GADVVVLDHHLGGETLPDCVAV 210 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NPN +D + GV F +++ +R RD+G A P+L +LDLVAL TV Sbjct: 211 VNPNRQDEDGDLGYFCAAGVVFLMLVEVRRQARDKGL-----GAGPDLMAMLDLVALATV 265 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 ADV PL NR L QG+ + + RPG+ AL +V+ DA + LGF LGPR+NA Sbjct: 266 ADVAPLIGANRALVRQGLKVMGRRQ-RPGLVALADVSRMDAAP-STYHLGFLLGPRVNAG 323 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GR+ +G LL D+ EA L+ LD LN R++IE ++ AL E + Sbjct: 324 GRIGKADLGARLLSTDDPHEAAALSERLDQLNTERRDIENAVRAAALEQAEARGFDAPLV 383 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 WH GVVGI+ASR+KE RP + G+ KGSGRS+ G+ + ++++ Sbjct: 384 WA----AGEGWHPGVVGIVASRLKEATGRPAVVIGLDGE-EGKGSGRSVSGIDLGASIQK 438 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + G++LK GGH MAAGL++ + + R EL+ + L ++ DG L P Sbjct: 439 VA--MEGLLLKGGGHKMAAGLTVARGQLEPAMARLAELLDKQGAGDLGPADLKLDGMLMP 496 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 ++E+ + + AGP+G P P + + + VGE HLKV GG +D I Sbjct: 497 GAASVELIEQIEQAGPFGAGAPAPRYGFPDVAVRFAKRVGESHLKVSFTDGMGGN-IDAI 555 Query: 534 AF-----NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 AF N+ L +G ++ +L++N + G +S Q+ +++ Sbjct: 556 AFGAFDTNLGPRLLE-HGGARFHVSGRLEVNTWGGRQSAQLRLED 599 >UniRef50_Q3AK10 Single-stranded-DNA-specific exonuclease RecJ n=3 Tax=Chroococcales RepID=Q3AK10_SYNSC Length = 618 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 173/568 (30%), Positives = 275/568 (48%), Gaps = 27/568 (4%) Query: 12 VDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPW---QQLSGVEKAVEILYNAF 68 V+ + +LP LR + RG S E + +E+A + L A Sbjct: 2 VEPSPLRGLDLPLALRCVLRRRGFSSTSEAASFLSPGDLPPTRDHFPDLEQACDRLVAAC 61 Query: 69 REGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR 128 R R+ + GD+DADG TSTAL + A + + + +P+R E+GYGL+P +V + + Sbjct: 62 RSRERVAICGDYDADGMTSTALLLRA-LAPLGAEPEPAIPSRMEEGYGLNPAMVQRLYDD 120 Query: 129 GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKS 188 G +L+VTVDNG+++ +E A SL + VIVTDHH P A+I+P P + Sbjct: 121 GVRLLVTVDNGVAAREALELAASLTMQVIVTDHHTIPMERPPMTALIHPATTPEGSPYRG 180 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 LAGVG+A+ + A+ L DL +GTVAD+ PL NR Sbjct: 181 LAGVGLAYVVAHAVAEALNKPEAIRVAR----------DLFCIGTVADMAPLVGANRSWL 230 Query: 249 WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 308 +G++++ +C+ G++AL +A + L A D+GF L PR+NA GRL + + V LL Sbjct: 231 LEGLNQLHRSECK-GVQALQHLAGLGERPLTAEDIGFQLAPRINAVGRLGEPRLVVDLLT 289 Query: 309 CDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQG 368 ++ A LA D N+ R+++ ++ EA+ L E S + LP L + WH G Sbjct: 290 AEDPDSAMALARRCDDCNRQRRDLCDAIEAEAVALVEA--ESDEALPSFLLLAQSHWHHG 347 Query: 369 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGG 428 V+GI+A+R+ ER+HRP A GDG+L+ S R G + AL L + +FGG Sbjct: 348 VIGIVAARLMERYHRPTALLAGEGDGSLRASVRGPIGFAVDRALSSCSDL----LTRFGG 403 Query: 429 HAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 H A G +++ + +R WL V D L ++ ++ + L+ Sbjct: 404 HPAAGGFTVKAELVHALHERLCSEADSWLMTQAQGRPVQPDALLQLKDVNWDLWRHLQSL 463 Query: 489 GPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGV 547 P+G P+PLF + +R + HL + + G IA+ D++ Sbjct: 464 APFGIGHPKPLFWSRGVSVGDRRDLKGGHLALTLR--QGESERRAIAWRWDSSAA---VP 518 Query: 548 REVQLAYKLDINEFRGNRSLQIIIDNIW 575 +AY + IN ++G + LQ+ + I Sbjct: 519 ECCDVAYSISINRWQGEQRLQLELKAIR 546 >UniRef50_Q7U6Y0 Possible single-stranded-DNA-specific exonuclease n=12 Tax=Cyanobacteria RepID=Q7U6Y0_SYNPX Length = 634 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 173/543 (31%), Positives = 268/543 (49%), Gaps = 27/543 (4%) Query: 37 SAQELERSVKGMLPWQ---QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVL 93 S +++ + +E AVE + A +G + V GD+DADG TSTAL + Sbjct: 39 SEEDVAELITPQELPDACGHFPDLEAAVERICRACEQGEALAVCGDYDADGMTSTALLLR 98 Query: 94 AMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLG 153 A+ LG + + +P+R E+GYGL+P +VD+ H +G +L+VTVDNG+++ ++ AR+L Sbjct: 99 ALIPLG-AKAEPAIPSRMEEGYGLNPAMVDRLHGQGIRLLVTVDNGVAAVEALQRARTLS 157 Query: 154 IPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFD 213 + VIVTDHH + P A+++P P + LAGVG+A+ L ++ L Sbjct: 158 MDVIVTDHHSIPEPRPWMTALLHPATTPEASPYRGLAGVGLAYVLASSVAERLGRMDAIQ 217 Query: 214 ERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANR 273 DL +GTVAD+ PL NR +G++ + +C G+ AL +A Sbjct: 218 VAR----------DLFCIGTVADMAPLTGANRRWLLEGLTTLHRSRC-EGVVALQRLAGL 266 Query: 274 DAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIE 333 L A D+GF L PR+NA GRL D + V LL + G+ LA D LN+ R+++ Sbjct: 267 GETPLTAEDIGFQLAPRINAVGRLGDPVLVVDLLTESDPGKTMALARRCDDLNRQRRDLC 326 Query: 334 QGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD 393 ++ EA L E + +P L + WH GV+GI+A+R+ ER+HRPV A G+ Sbjct: 327 DAIEAEATALVES--DAEGLIPPFLLLAQSHWHHGVIGIVAARLMERYHRPVALLAGDGE 384 Query: 394 GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELV 453 G L+ S R+ QG + AL L + +FGGH A G +++ + R +L Sbjct: 385 GLLRASARAPQGFAVDKALTTCADL----LERFGGHPAAGGFTVKASQVHALHDRLNQLT 440 Query: 454 TEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLV 512 WLD V + L E+ ++ L P G P PLF ++ R + Sbjct: 441 QPWLDQEGAGRPVRPEACLKLNEINWDLWAALETLTPHGVGHPAPLFWSRGCQVADWRTL 500 Query: 513 GERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIID 572 HL V ++ G +A+ V +AY+L +N +RG R LQ+ + Sbjct: 501 NGGHLAVTLQ--QGTHQRRAVAWRCSPL---TPMPERVDVAYELKLNVWRGERRLQLELK 555 Query: 573 NIW 575 +I Sbjct: 556 SIR 558 >UniRef50_C9RIN9 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIN9_FIBSS Length = 570 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 167/586 (28%), Positives = 285/586 (48%), Gaps = 44/586 (7%) Query: 12 VDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVEKAVEILYNA 67 V T ++P + R SRG+++ + + + + G++KAVE + Sbjct: 5 VASTLSSTLKIPHAVARFLVSRGIKTVSDAYHMLCSSESDVHDPFLMMGMDKAVEWILAV 64 Query: 68 FREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHA 127 G R+ + GD+D DG TS L ++++G + ++ +PNRF DGYGLS VD+ + Sbjct: 65 RERGERVFIFGDYDLDGMTSVTLLTRCLKTVGIES-EWRLPNRFGDGYGLSVSAVDEMYE 123 Query: 128 RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP-GDTLPAAEAIINPNLRDCNFPS 186 GA+ ++TVD GI+++ + HA+ LG+ V+V DHH P GD LP ++ +++P+ N+P+ Sbjct: 124 AGARNLITVDTGITANVEIAHAKELGMAVMVMDHHQPSGDGLPVSDVLLDPHQEGDNYPN 183 Query: 187 KSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRI 246 L GVGV++ + AL + L I E LDLVALGT+AD+V + NR Sbjct: 184 PELCGVGVSYKFICALFSRL-----------GIKAPVEYLDLVALGTLADLVQMTPENRY 232 Query: 247 LTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVAL 306 T G+ ++ + PG++ + + + D+ + L P LNA GR++ + L Sbjct: 233 FTRTGLESLKNSRW-PGVQEMYTSLMKPHSCVGGIDVMYKLAPLLNAPGRMERPDPALKL 291 Query: 307 LLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWH 366 LLC+N GEA L EL N RK+ E + A+ + L DT+P + + WH Sbjct: 292 LLCENKGEAGKLLEELKDWNARRKQKEAEITEMAMEQVKALY--GDTIPTVIVVAGENWH 349 Query: 367 QGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKF 426 GV+GI+A+++ + FHRP + +G S R++ G + AL L+ ++ Sbjct: 350 VGVIGIVAAKLAQEFHRPSAVLSII-NGMAHASARAVPGFNWHKALFDSRELFD----RW 404 Query: 427 GGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV---SDGPLSPAEMTMEV-- 481 GGHA AAG SLE K + + R + + + D ++ E+T+E Sbjct: 405 GGHANAAGFSLEAGKIEELRGRLLQSAKDQGYTGEVINTDESYPYDIKIALRELTVETRV 464 Query: 482 ------------AQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGP 528 + + P+G FP P F + + + R + HL++ + G Sbjct: 465 PTGRYPIRERSILEFIDLLEPFGGNFPYPAFRAENVTVHRVRELRGGHLQMEISQA-GSA 523 Query: 529 LLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + IAF + + R V + ++ N + +++Q+ I +I Sbjct: 524 VFPAIAFGLRKSKALLGRSRPVTVVFEPIWNYYNNTKTVQLCIKSI 569 >UniRef50_D0LJ88 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJ88_HALO1 Length = 577 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 184/590 (31%), Positives = 280/590 (47%), Gaps = 32/590 (5%) Query: 1 MKQQIQLRRREVDETADLPAEL--PPLLRRLYASRGVRSAQELE----RSVKGMLPWQQL 54 M +R + + L A L + R A RG+ A + + P L Sbjct: 1 MTSTWTIRTVDATTVSSLAAGLGVSEITARCLAGRGIADASSARSYLAPRLNQLRPPVGL 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 +G+ AVE L A +G RI + GD+D DG T+ AL + LG S + + R + G Sbjct: 61 TGLSTAVERLARAVSQGERIGIFGDYDVDGVTTAALMASFLEQLGASCVPRV--ARRDAG 118 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGD--TLPAAE 172 YG D + G ++I+T D G S +E A + G+ VIV DHH A Sbjct: 119 YGFGSAEADAMASAGCRVIITGDCGTSDIDAIERAAARGVDVIVVDHHTVPSATEQHPAL 178 Query: 173 AIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALG 232 A++NP D FP +++A VG+AFYLM ALRT L +G+F +P+L ELLDLVALG Sbjct: 179 ALVNPLRADSTFPFRAMASVGLAFYLMAALRTELSGRGYFRS-GREMPDLRELLDLVALG 237 Query: 233 TVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQK-LAASDLGFALGPRL 291 TVAD+VPL NRIL G+ + G+ RPG+ AL+ +A + + +G+ LGPRL Sbjct: 238 TVADLVPLQGENRILAATGLQYLAQGR-RPGVAALMALAKVGGDRGIDERAIGWRLGPRL 296 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NA GR+ D + ++LLL + EA A +++ N+ R+ + + + L + Sbjct: 297 NAPGRMGDAAPALSLLLARDAAEAEHWAAQVEDANERRRAAQAEVWEQVLGML-----PS 351 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG-DGTLKGSGRSIQGLHMRD 410 + + W G+ GI+AS++ E F RP A G +GSGR+ +G H+ + Sbjct: 352 ADPGPAVVVAGDGWPSGITGIVASKLNEMFERPSFVIAVDPVSGLARGSGRAPKGFHLCE 411 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV--- 467 L R D+ +++FGGHA AAGL+ E + + ++ V E G Sbjct: 412 ILARCDS----HLVRFGGHAGAAGLTAEAGRVEALREALSAAVAEASADGDEGGAGRGSL 467 Query: 468 SDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGER--HLKVMVEPV 524 D + ++ + + L P+GQ +PL R+ R VG HLK+ E Sbjct: 468 IDAEVDLGQVDESLCRELGQLSPFGQGNEKPLLGCRGMRVRTTRRVGGDGSHLKLEFEDR 527 Query: 525 GGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 G L GIAF + + IN +RG +++ I ++ Sbjct: 528 Q-GRALSGIAFGWGERDP--GAGATIDATFVPSINVWRGESRVELEIQHL 574 >UniRef50_Q2JMF8 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Synechococcus RepID=Q2JMF8_SYNJB Length = 758 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 171/601 (28%), Positives = 283/601 (47%), Gaps = 48/601 (7%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSG 56 M+ + +L L E ++ A RG+ + ++ + V P L Sbjct: 1 MEYRWELLPTPPQFNPQLSREYGKYAAKVMALRGLHTWEQAQAFVDPEHYSPTPPASLPD 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +E+AV L A + + GDFD DG TST+L + A++ LG + + +P R +G+G Sbjct: 61 LERAVARLLQAREREETLCIWGDFDCDGVTSTSLLLSALQPLGF-RVQFSIPLRSTEGHG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 L+P+ + Q A+G Q+I+TVD G+ + A + A++ G+ VIVTDHH+ D LPAA A++N Sbjct: 120 LNPQRLQQVLAQGCQVILTVDCGVGNAAEIAMAQAQGVDVIVTDHHMLPDPLPAAYAVVN 179 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P P + L GVGVA+ L AL L IP + + LDLVA+G VAD Sbjct: 180 PLRLPAEHPLRFLPGVGVAYKLAEALYQAL-----------GIPGVEQHLDLVAVGIVAD 228 Query: 237 VVPLDANNRILTWQGMSRIRAGKC---RPGIKALLEV--ANRDAQKLAASDLGFALGPRL 291 V L R L +G+ + + + RPG++ALL + A D+ F + P+L Sbjct: 229 VAVLQRECRYLVQRGLPVLASTQPSTQRPGLQALLARVDNGQSQGVPTAQDIAFRIAPKL 288 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 N GRL+D S+ V LL + A+ L AL++ R+++ Q + EA E L+ +R Sbjct: 289 NVIGRLEDASLAVELLTTSDPERAQALVQRFVALDEERRQLTQQVIQEASQQVESLDLTR 348 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG-DGTLKGSGRSIQGLHMRD 410 + G + + W+ GV+GI A+ + E+++ P + A G GSGRS+ G+++ + Sbjct: 349 E---GAIVLAEAGWNPGVLGIAAAHLVEQYNCPTVLIAKDEAAGRGYGSGRSLPGVNLVE 405 Query: 411 ALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDG 470 A+E + L + + GGH MAA + ++ Q + + P + + Sbjct: 406 AIEAVRPL----LRRGGGHPMAARIQVDLACLAAVQLALQRELAARVSPDQQARALAVEI 461 Query: 471 PLS-----------PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVG----ER 515 L AE+ EV + L+ P+G P P+ +G R Sbjct: 462 ILDWELLVSQDRDGVAELD-EVYRQLQLLQPFGHGNPNPVVALMNFRPNSSNLGVSRNGR 520 Query: 516 HLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 HLK ++ G L + L + + +A +L+ ++ RG + Q + + Sbjct: 521 HLKFELQGSPGSRTL--WFWQAGEELERWQKCQALDIALQLEADD-RGKQPWQGKVLAVR 577 Query: 576 P 576 P Sbjct: 578 P 578 >UniRef50_B4WFY1 Single-stranded-DNA-specific exonuclease RecJ, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WFY1_9SYNE Length = 817 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 162/613 (26%), Positives = 270/613 (44%), Gaps = 61/613 (9%) Query: 5 IQLRR-----REVDETADLPAEL--PPLLRRLYASRGVRSAQELERS-----VKGMLPWQ 52 ++ + ET L P RL +RG+R+A+ L P+ Sbjct: 9 WRIADTGTLAPDWIETVAQITGLTRPEKGARLLWARGIRTAEALRGFCWPSAYTPASPFA 68 Query: 53 QLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCS--NIDYLVPNR 110 + KAV L A ++ + GDFDADG TSTA+ ++ + Y +PNR Sbjct: 69 FGEEMTKAVARLMLARDRVEKVAIWGDFDADGITSTAVLWDGLKQFFDEPGQLTYFIPNR 128 Query: 111 FEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPA 170 ++ +GLS +DQ A+ LIVT D G ++ +++A SLG+ VIV+DHH P Sbjct: 129 LKESHGLSIVGIDQLAAQDVTLIVTCDTGSTNPDEIDYAHSLGLEVIVSDHHTLPAVRPN 188 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 AI+NP + P +L+GV +A+ L+ AL L D + L+EL DLVA Sbjct: 189 VVAIVNPRALPSDHPMANLSGVAMAYKLVEALYERLPD--------VPTRPLSELTDLVA 240 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAG-----KCRPGIKALLEVANRDAQKLAASDLGF 285 +G +AD+V L + R L G+ +++ RPG+ LL++ R + +D+ F Sbjct: 241 IGLIADLVELTGDCRYLAQVGIEQLQTHLKSAYPIRPGVAQLLKLCRRAGDR--PTDISF 298 Query: 286 ALGPRLNAAGRL-DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLC 344 +GPR+NA R+ + S V LL + + LA + + N RK ++ + +A Sbjct: 299 GIGPRINAVSRIYGEASFCVELLTSQDSDRCQDLAEKTELANTRRKALQNDVLKQATHQL 358 Query: 345 EKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA------GDGTLKG 398 E + G + + P+W GV+G++A+++ +++ RP I D ++G Sbjct: 359 ET---RDLSTTGVIVLCDPQWPVGVLGLVAAQVAQQYGRPTILLTQDTPADDGDDVLVRG 415 Query: 399 SGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLD 458 S RS+ + + D + L + FGGH AAGLSL +FQ + + + Sbjct: 416 SARSVNQIDLYDLVSSQAHL----LTGFGGHPYAAGLSLPAKDLPMFQAAINQQYRQKMG 471 Query: 459 PSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHF--------RLLQQR 510 L V D ++ AE+ ++ Q L+ P G P P + L+ R Sbjct: 472 AELSSPVVQVDLSVTVAELGQDLFQELKLLEPCGMGNPVPKLLIQNCWFENVWHQKLKDR 531 Query: 511 LVGE-RHLKVMVEPVG------GGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRG 563 G+ ++K E G+ + D + +LD N Sbjct: 532 TGGKVGYIKTSFELCDESGNHKSSSKFPGLWWGH---YKEDVPPGRWDVVAELDYNSHPK 588 Query: 564 NRSLQIIIDNIWP 576 +R ++ + +I P Sbjct: 589 SRRYEVRLIDIRP 601 >UniRef50_Q1QT56 Exonuclease RecJ n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QT56_CHRSD Length = 599 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 185/577 (32%), Positives = 281/577 (48%), Gaps = 23/577 (3%) Query: 17 DLPAELPPLLRRLYASRGVRSAQEL----ERSVKGMLPWQQLSGVEKAVEILYNAFREGT 72 A L L R+ A R A ++ + S++ + ++L +A E + A EG Sbjct: 29 AQAAGLSELQARVLAGRLNAYAGDIAPLVDPSLRYLTHPERLQDARRAAERIAQAVAEGE 88 Query: 73 RIIVVGDFDADGATSTALSVLAMRSL---GCSNIDYLVPNRFEDGYGLSPEVVDQ--AHA 127 I ++ D+D DG TS + + + L + L+ +R DGYG+S +V++ A + Sbjct: 89 HIGILTDYDVDGITSHVVILRTLNELFGVPLHKLHSLIGHRIFDGYGISLPLVERTLALS 148 Query: 128 RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAA--EAIINPNLRDCNFP 185 L++T D G S + G+ V+VTDHH + P A A +NP DC++P Sbjct: 149 PRPSLVITADCGSSDEPRIARLHEAGLDVVVTDHHALPASGPPASAYATVNPTRADCDYP 208 Query: 186 SKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA--N 243 ++AG VA+ M R+ L +QG + + P L+ L VALGTVAD V L Sbjct: 209 DPTIAGCMVAWLTMSLTRSVLIEQGV---ASPSTPKLSPWLSYVALGTVADCVSLGDSPA 265 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NR + G++ I + + + E D+ A L F +GPR+NA RLDD Sbjct: 266 NRAVVSHGLTLINRMEA-ACWRVMAERLGTDSVPFDAETLAFQMGPRINARSRLDDPYAA 324 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 + +L + AR LD NQ+RK IE M A +L + + ++ Sbjct: 325 LHFMLAADDATARRHLEVLDTDNQSRKAIESDMVERARSLALEALAEG---ASAIVVFLE 381 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGM 422 + H GV GI+ASR+ + F RP + PA G L GSGRSI+GLH+RDAL+R L P Sbjct: 382 DGHAGVQGIVASRLVQAFGRPTLVLTPAAAAGMLTGSGRSIEGLHLRDALQRAHELAPEA 441 Query: 423 MLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVA 482 + +FGGH AAG+ + ++ F+ F V E L L V++DG L PA++++ Sbjct: 442 LPRFGGHRGAAGVGVPRERLTAFRDAFLTAVEEQLGGRDLFPYVLTDGALEPAQLSLASV 501 Query: 483 QLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV--DTA 540 L P+G+ F PLF+G FR+ Q R VG +M+E G I F Sbjct: 502 DELARLAPYGREFDAPLFEGEFRIEQLRAVGADGNHLMLELSMGPVSHRAIWFRALTPGE 561 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 + + AYKL N ++G SLQ++I++ P+ Sbjct: 562 VPAFGPGDRLHCAYKLARNRWKGRESLQLMIEHAEPV 598 >UniRef50_A6Q667 Single-strand DNA-specific exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q667_SULNB Length = 527 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 162/539 (30%), Positives = 264/539 (48%), Gaps = 34/539 (6%) Query: 39 QELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSL 98 +E S+K + +++A E + A +I ++GD+D DG TST L L + Sbjct: 19 KEGFLSLKDLPHPSTFKDMDRATERIVRAIENREKISIIGDYDVDGVTSTTLMKLFFDEI 78 Query: 99 GCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIV 158 +++++PNRF DGYGLS ++ + G L +TVDNGIS+ + + GI +I+ Sbjct: 79 DYP-VEWVIPNRFRDGYGLSANIIPRIA--GTDLAITVDNGISAVYAAQLCKEEGIELII 135 Query: 159 TDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIA 218 TDHH+ +P A AII+ C+FP + + G +A+YL+ +L+ L + Sbjct: 136 TDHHMLAPEVPEAYAIIDQKQEACSFPYEEVCGAQIAWYLIASLKNALALKI-------- 187 Query: 219 IPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKL 278 N+ ++L A+ +ADV+PL NR + +G+ + RP IKA +E ++L Sbjct: 188 --NMMPYMELAAIAIIADVMPLWHINRAMVERGIKALSQS-SRPAIKAFMEHT--QKEEL 242 Query: 279 AASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQI 338 ++ D+ F+ P LNAAGR++D S V L NI +ARV L N RK E+ + Sbjct: 243 SSEDIAFSFAPILNAAGRMEDASHAVDFLTSTNIYDARVRLERLIGFNTERKATEEDITR 302 Query: 339 EALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKG 398 +AL D + + WH+GVVGI+A+R+ +P I + +G LKG Sbjct: 303 KALQKA-------DWEDEVIIVAGEGWHEGVVGIVAARVARVREKPCIILSRNEEGILKG 355 Query: 399 SGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGE-LVTEWL 457 SGRS + ++ + KFGGH A GLSL E F+ F+++ E Sbjct: 356 SGRSYGECDLFGIVDGCRE----DLEKFGGHKAAIGLSLHETHFESFREKVQESYHQGNY 411 Query: 458 DPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERH 516 + E+V G L +E++ + ++++ P+G P P F +LQ +G+ Sbjct: 412 VKEEIDPEIV--GELHFSEISFALTEMMQKYEPYGHGNPRPKFISSDVEILQADTMGKEG 469 Query: 517 LKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + G ++ G+ F V + Y ++ N FRGN +LQ++ID I Sbjct: 470 EHLRFSFAQEGIVMPGVKFKTKEHFE---TGERVSITYTVNENHFRGNVTLQLMIDKIK 525 >UniRef50_UPI00016B257B single-stranded-DNA-specific exonuclease RecJ n=5 Tax=candidate division TM7 RepID=UPI00016B257B Length = 548 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 172/569 (30%), Positives = 281/569 (49%), Gaps = 40/569 (7%) Query: 25 LLRRLYASRGVRSAQELERSVKGMLP-----WQQLSGVEKAVEILYNAFREGTRIIVVGD 79 L ++ ASR + +L + L ++KAV+ + A+ +G +I++ GD Sbjct: 3 LFEKILASRNI-DKDKLNSFLSPDYDLEKGDPYLLPDMQKAVDRIKTAYEKGEKIVIYGD 61 Query: 80 FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139 +D DG ++TAL + A S G +I +PNRF +GYG++ VD+ + A LI+TVD G Sbjct: 62 YDVDGISATALLLDAFESFGFKDIQSFIPNRFVEGYGMTIGAVDKIKSMDANLIITVDCG 121 Query: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199 H + +A SLGI +VTDHH +T P A A +NP +P LAGVGVAF L+ Sbjct: 122 SLCHNEINYANSLGIDTVVTDHHNVAETPPPAVAAVNPRFGGHLYPFSDLAGVGVAFKLV 181 Query: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259 AL+ L + LLDLVALGTV D+V L NR + G+ ++ + Sbjct: 182 QALQKEL--------DGLPEGYEKWLLDLVALGTVCDIVKLTGENRANVYWGIEVMKK-Q 232 Query: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319 R G+KAL+ VAN D ++A LGF GPR+NAAGR++ S+ + +L+ N +A A Sbjct: 233 RRTGLKALMAVANIDKADISAKTLGFVFGPRINAAGRMETASLALDMLISKNGDDALNKA 292 Query: 320 NELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKE 379 N +D LN R++++ + EA + + L + W+ G++GI+A++I E Sbjct: 293 NYIDNLNSHRRQMQDDIFKEACKIALDYKDDD-----VLVINGKNWNHGIIGIVAAKILE 347 Query: 380 RFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEE 439 +F +PV A +G KGS RS DA+ D + A AAG++L+ Sbjct: 348 KFKKPVYILAENDNGETKGSARSFGDFSAADAVRAADDIIIKGGGH----AAAAGVTLKN 403 Query: 440 DKFKLFQQRFGELVTEWLDPSL-----LQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQM 494 DK F+QR E + + +V D +E+ ++ + P+G Sbjct: 404 DKISDFRQRVNEFYNSLQLNNQERYLLPKADVEID---DFSEINEDLVGKIATMEPFGNG 460 Query: 495 FPEPLFDGH-FRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQ 551 PEP+ ++ + +G +H+K+ G ++ +AFN Sbjct: 461 NPEPVIKITAADIVNVQHMGTDGQHIKLSARDSD-GVVIRMLAFNAPENFLC-KPGDTAS 518 Query: 552 LAYKLDINEFRGNRSLQ---IIIDNIWPI 577 + ++ IN+++G RS++ + + + P+ Sbjct: 519 IWFRPVINKWQGIRSVEGELLHLQLVHPV 547 >UniRef50_C6V5J7 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Neorickettsia RepID=C6V5J7_NEORI Length = 577 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 186/568 (32%), Positives = 279/568 (49%), Gaps = 29/568 (5%) Query: 16 ADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLSGVEKAVEILYNAFRE 70 L + + +R V + ++ + + L G+++ +E + A E Sbjct: 26 LRQKFGLSLTVASVLYNR-VGADDDIATFLNPKLKHTLPDPFSLLGMKEGIERILRAISE 84 Query: 71 GTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGA 130 +I++ GD+D DGATS+AL R +G +D +P+R +GYG + Q G Sbjct: 85 DEKIVIYGDYDVDGATSSALLKNYFREIG-KKVDIYIPDRITEGYGPNKAAFMQLKKEGY 143 Query: 131 QLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNF--PSKS 188 L +TVD GI +HA +E A ++G+ +IV DHH+ D +P A A+INPN D ++ Sbjct: 144 TLCITVDCGILAHAEIEVANTIGLDIIVVDHHISADVIPPATAVINPNRIDQPNVAYTEH 203 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 LA VGV+F L++ L LR +G+FD N PNL LDLVALGTV DVV L NR Sbjct: 204 LAAVGVSFLLLIGLNVVLRAKGFFD--NKKEPNLINYLDLVALGTVCDVVRLTGINRAFV 261 Query: 249 WQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLL 308 QG+ I + G+ L + L A LG+ +GP +NA GR+ S+G LL Sbjct: 262 KQGLKVIDQ-RKNLGLSILTKELKL-FSTLEAYHLGYVIGPHINAGGRISQSSLGSRLLS 319 Query: 309 CDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQG 368 N EA +A L LN RKEIE+ E +T EK + + WHQG Sbjct: 320 TQNPAEAEEIATTLCVLNLKRKEIERAALQEVITQVEKTSK------KIILAASANWHQG 373 Query: 369 VVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGG 428 ++GI+ASRIK+ +H P I + G+ K S RSI+G ++ A+ + G++++ GG Sbjct: 374 IIGIVASRIKDLYHLPTIILSIDGN-IAKASARSIKGANIGMAV--IAAKESGLIIEGGG 430 Query: 429 HAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDA 488 H MAAG S E +K ++ F E E Q + D L +T ++ L+ Sbjct: 431 HKMAAGFSCETEKIPAIREFFEEYFKEV----DTQESIHIDSELYIDTITSDLCDDLKIL 486 Query: 489 GPWGQMFPEPLF-DGHFRLLQQRLVGER-HLKVMVEPVGGGPLLDGIAFNVDTALWPDNG 546 P G PEP F R++ R++GE H+ + V ++ GIAF D L Sbjct: 487 APHGSGNPEPKFVLKDVRVVTSRVIGEDGHIACTLRDVRTHTVIRGIAFRADPILKEAIL 546 Query: 547 VREV-QLAYKLDINEFRGNRSLQIIIDN 573 EV K+ + + Q+II++ Sbjct: 547 NCEVTNFLVKIKADNLGYSNKPQVIIED 574 >UniRef50_P73518 Single-strand-DNA-specific exonuclease; RecJ n=1 Tax=Synechocystis sp. PCC 6803 RepID=P73518_SYNY3 Length = 759 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 169/615 (27%), Positives = 274/615 (44%), Gaps = 61/615 (9%) Query: 1 MKQ-QIQLRRREVDETADLPA-------ELPPLLRRLYASRGVRSAQELERSVKGML--- 49 M Q + QL + +L RG++SA +L + Sbjct: 1 MAQFRWQLIPPVTPPAIFVEQVRRHCGQSSGQFAAQLLWQRGIQSADQLGGFLSPDCYTP 60 Query: 50 --PWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN--IDY 105 PW+ ++ AV+ L A + ++ + GDFDADG TSTA+ + + + Y Sbjct: 61 TSPWEFGQEMKWAVQRLGQAMAQKEKVTIWGDFDADGITSTAVLWEGLGQFFPQDSQLTY 120 Query: 106 LVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG 165 +PNR + +GL+ +++ +G +LIVT D G ++ + +A+ LG+ VIVTDHH Sbjct: 121 TIPNRLRESHGLNRPGLERLATQGTKLIVTCDTGSTNLDEIVYAQQLGMDVIVTDHHTLP 180 Query: 166 DTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAEL 225 D P AIINP P +L+GV VAF L+ AL + L +L Sbjct: 181 DDRPEVVAIINPRYFADGHPLFNLSGVAVAFKLVEALYNQYPT--------VPQQPLEDL 232 Query: 226 LDLVALGTVADVVPLDANNRILTWQGMSRIR-----AGKCRPGIKALLEVANRDAQKLAA 280 LDLVA+G +AD+V L + R L +G++++R A RPGI ALL + NR+ + Sbjct: 233 LDLVAIGLIADLVTLQGDCRYLAQRGIAQLRTQKDPATATRPGIHALLNLCNRNGDR--P 290 Query: 281 SDLGFALGPRLNAAGRL-DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIE 339 +D+GF +GPR+NA R+ D S GV LL + LA E + LN RK +++ + IE Sbjct: 291 TDIGFGIGPRINAISRIKGDASFGVELLTSRDTKVCNQLAAEAETLNSRRKGLQKSVIIE 350 Query: 340 ALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGS 399 + + + G + + P+W GV+G+ AS + + RP I KGS Sbjct: 351 IDQRLQNI---DLSTTGVVVLTDPQWPTGVLGLAASHVAQTCGRPAILLNTQDGKIAKGS 407 Query: 400 GRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDP 459 RS+ + + L L ML FGGH AAGLSL DK LF + + + Sbjct: 408 ARSVANIDLYALLHSQRHL----MLGFGGHPFAAGLSLPLDKLPLFTEAVNQQFWQSYGA 463 Query: 460 S-LLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEP-LFDGHFRLLQQ--RLVGER 515 L + D + A++ ++ + P+G P P L + ++ + R + +R Sbjct: 464 QISLDPILAVDLQVKVADLGQDLFREFNLLEPYGMGNPAPKLLLENVQVGRPSFRNIKDR 523 Query: 516 ------HLKVMVE-------PVGGGPLLDG--IAFNVDTALWPDNGVREVQLAYKLDINE 560 +LK G ++ + + + L +LD N Sbjct: 524 TGNKVSYLKTSFRVTDYPPKTDDDGQVVQCPGVWWGHHP--DELPQNEPLDLVVELDFNT 581 Query: 561 FRGNRSLQIIIDNIW 575 + +R ++ + + Sbjct: 582 Y--DRQYEVRLIDFR 594 >UniRef50_Q6ALW7 Related to single-strand DNA-specific exonuclease n=1 Tax=Desulfotalea psychrophila RepID=Q6ALW7_DESPS Length = 552 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 171/558 (30%), Positives = 266/558 (47%), Gaps = 22/558 (3%) Query: 26 LRRLYASRGVRSAQELERSVKG----MLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFD 81 + ++ + RG + AQ +E + + + G+++AV + A EG I++ GD+D Sbjct: 7 IEQILSLRGYQEAQAIEEFLSPRLSSLPHPFTMLGMKEAVAEVLRAIDEGLPILIWGDYD 66 Query: 82 ADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAH-ARGAQLIVTVDNGI 140 DG T T++ V + + + +P+R +GYGL+ A L++TVD GI Sbjct: 67 VDGTTGTSILVNFFERIDV-KVYWHIPSRLTEGYGLNLTYFQNLPWAEEHFLLITVDCGI 125 Query: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200 S+ +E + G VIVTDHH +P ++NP+ C F SLAGVGVAFYL+ Sbjct: 126 SNATEIEAIKKRGGRVIVTDHHQLPKRVPNCT-VLNPSNEKCPFYGTSLAGVGVAFYLVA 184 Query: 201 ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKC 260 +R L + + + PNL L VA GT+ADVVPL NR+L G+ + Sbjct: 185 GVRNALVSGELNGKYSQSTPNLKSFLGFVAFGTLADVVPLTPVNRLLVKAGVESFARTE- 243 Query: 261 RPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLAN 320 G++ALLE ++ + + D+GF L P++NAAGR V LL A +A Sbjct: 244 FIGLQALLESSDIADGSVTSDDIGFNLAPKVNAAGRYGVAHQVVELLTSKEAEPAYKIAK 303 Query: 321 ELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKER 380 L LN RK + + E E L + ++ +G++GILASR+ +R Sbjct: 304 TLTKLNNDRKLLCKENMAE----IETLLHIETIKADACIIVEGDFFEGILGILASRLVDR 359 Query: 381 FHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEED 440 FH P I F+ A DG LKGS RSI+ +++ D + ++ KFGGH MAAG+S+ Sbjct: 360 FHLPAIVFSRAADGDLKGSARSIEEINILDVITETS----FLLKKFGGHKMAAGMSMSPL 415 Query: 441 KFKLFQQRFGELVTEW-LDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPL 499 F F+ F E + + + D + + L + P+G P+P Sbjct: 416 NFAAFRSAFVENLQRAEVKEIKQESRYELDASVE-QVFNPDSLALYQKMEPFGPGNPQPT 474 Query: 500 F-DGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKL 556 F D H ++ R VG + HL++ + G + I FN+ V++ + Sbjct: 475 FYDAHALIVAARPVGQSKEHLQLTIRGKYGDN-IKAIGFNLGEKGRNVIAGSTVKIIFTP 533 Query: 557 DINEFRGNRSLQIIIDNI 574 IN F+ S Q I +I Sbjct: 534 TINRFKERVSWQARILDI 551 >UniRef50_C5B4H2 Single-stranded-DNA-specific exonuclease protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4H2_METEA Length = 614 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 172/556 (30%), Positives = 270/556 (48%), Gaps = 31/556 (5%) Query: 28 RLYASRGVRSAQELERSVKGM-----LPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDA 82 ++ RGV LE K M L+ ++ A + A R G + ++GD+D Sbjct: 73 QIALMRGVA-PSALETFFKPMLRTSMPDPSSLADMDAATARIAEAVRRGETVGLLGDYDV 131 Query: 83 DGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISS 142 DGATSTA+ + + S G Y +P+R +GYG +P VD GA L++ +D+G + Sbjct: 132 DGATSTAIMLRWLGSAGHDKAVYYIPDRIREGYGPNPGAVDAIAEAGATLLLVLDSGTLA 191 Query: 143 HAGVEHARSLGIPVIVTDHHLPGDTLP-AAEAIINPNLRDCNFPSKSLAGVGVAFYLMLA 201 H + HAR+ G+ V+V DHH P TLP ++NP D +L G+AF L ++ Sbjct: 192 HGPIAHARARGMDVVVVDHHEPSRTLPLPDAILVNPKRPDDASGQTNLCTAGLAFLLAVS 251 Query: 202 LRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCR 261 L LR +G+FD+ IA P+ +LL L ALGTVADVVPL NR + QG+ ++ Sbjct: 252 LNRLLRAEGYFDQAGIAPPDPMDLLGLAALGTVADVVPLTGLNRAIVVQGLPKLDR---N 308 Query: 262 PGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANE 321 PGI+AL+E + GF GP +NAAGR+DD +G LL D+ GE R LA Sbjct: 309 PGIRALVEETG--EGEFTPRTAGFVFGPCINAAGRIDDTRLGTLLLASDDPGETRDLARH 366 Query: 322 LDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERF 381 L +N R+ +++ M A+ E + D + + WH G+VG++A+R++E Sbjct: 367 LREINAQRQAMQKEMVEAAVARALSAEFADD---PVIVIEDRAWHPGIVGLVAARVREAT 423 Query: 382 HRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDK 441 +P + KGS RS+ G M A+ R G+++ GGH MAAGL++E + Sbjct: 424 DKPAVVVGE----FGKGSCRSVDGFDMGTAIIRARE--QGILIAGGGHRMAAGLTIEAGR 477 Query: 442 FKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFD 501 + ++ + D ++E L P+G +P Sbjct: 478 LEELRRFVCGAA-----FDFERPPTEVDVVAEAGTASVEAIAPLEALAPYGAGNQQPAVA 532 Query: 502 GHFRL-LQQRLVGERHLKVMVEPVGGGPL---LDGIAFNVDTALWPDNGVREVQLAYKLD 557 + + R++ ERHLK+M+E G + + + AL + V + ++ Sbjct: 533 VVGGIARRVRILKERHLKLMLEGPSGSTEAILFNAVGTRLGDALAA-SEGLPVDVLGRMA 591 Query: 558 INEFRGNRSLQIIIDN 573 ++EF +QI ID+ Sbjct: 592 VDEFNAQARVQIKIDD 607 >UniRef50_A7ZG65 Single-stranded-DNA-specific exonuclease RecJ n=26 Tax=Campylobacteraceae RepID=A7ZG65_CAMC1 Length = 535 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 157/568 (27%), Positives = 273/568 (48%), Gaps = 38/568 (6%) Query: 8 RRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNA 67 R++ + + ++ LL R + + ++ + + + L + K + A Sbjct: 4 RQKVLAKAMLTKEDIRNLLARRFCN-------DIHKKLSEIPTPSALKDIYKGANRIKEA 56 Query: 68 FREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHA 127 I +VGD+D DG S+ + LG N +PNRF+DGYGL+PE++D+ + Sbjct: 57 IERNEHIAIVGDYDVDGVVSSVILAEFFDDLGVKNYLVKIPNRFKDGYGLNPEIIDELAS 116 Query: 128 RGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSK 187 LI+TVDNGIS++ + GI +I+TDHH+P LP A AIINP DCNFP+ Sbjct: 117 D-VSLIITVDNGISANDAAAICKEKGIDLIITDHHMPPAVLPEAYAIINPKQEDCNFPNI 175 Query: 188 SLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRIL 247 + G VA+YL+ AL+ + ++++ L+L+A+ +AD++ L NR+L Sbjct: 176 EICGAEVAWYLVGALKDVCKLNY----------DMSKFLELLAIAIIADMMELRDMNRML 225 Query: 248 TWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALL 307 G+ ++ A K R + E +D K D+ F + P +N+AGR+DD L Sbjct: 226 VRMGICKLNASK-RSAFCVIKEFYGKD--KFECDDISFLIAPLINSAGRMDDAMNSFNFL 282 Query: 308 LCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQ 367 +I EA + + N +RKE E+ + +L ++ + + +WH+ Sbjct: 283 RAKSIEEAYDYLDTIIEFNNSRKEEERQLFECSLKDVKE-------DDEVIITWGEQWHE 335 Query: 368 GVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFG 427 GV+GI+ASR+ + F +P I F+ G KGS RS+ L + + + ++ +G Sbjct: 336 GVIGIVASRLAKHFAKPAIVFSIDK-GRAKGSARSVGKLDILSLIAS----HEDLLTSYG 390 Query: 428 GHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRD 487 GH AAGL+L + + F++ + L+ + G + P+E+ E+ ++L Sbjct: 391 GHKGAAGLTLAPENLEKFKEEINKSC-SCLNMQECKSSDELLGDIMPSEIDFELLEILEF 449 Query: 488 AGPWGQMFPEPLFDGHFRLL-QQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNG 546 P+GQ P P+F ++ +RL+G + + L+ + FN Sbjct: 450 YEPYGQKNPRPVFKIENAVVKNERLIGRDQNHLKLILQKDNKTLEALFFNFT---RHVRV 506 Query: 547 VREVQLAYKLDINEFRGNRSLQIIIDNI 574 V + + + N FRG + Q++I I Sbjct: 507 GEMVDVIFCVSKNSFRGLVTPQLLIREI 534 >UniRef50_D1C3K1 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3K1_SPHTD Length = 598 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 166/582 (28%), Positives = 260/582 (44%), Gaps = 36/582 (6%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGVE 58 Q I+ + T LL + RG R ++ ++ + L + Sbjct: 40 QWIEPAPADWAHTLCEDF----LLGEILWRRGFRDRAAVDAFLRPRLDDLPDPHALPDLT 95 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 AV ++ + G I+V GD+DADG TAL A+ +LG + + +VPNR DGYGL+ Sbjct: 96 AAVSLIRDTIAAGRPIVVYGDYDADGLCGTALLTRALTALG-AEVRTMVPNRLTDGYGLN 154 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 + A GA L + VD G + ++ GIP +V DHH D A A ++P Sbjct: 155 LNAARRIAADGAGLAILVDCGTGDAEALRLLQAAGIPAVVLDHHHVRDPNLPAAAFVSPR 214 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 D +P LA GV + L AL R G +A DVV Sbjct: 215 RPDSQYPFAGLAAAGVTYQLARALLGEERAAGLLPLAALATVA--------------DVV 260 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL+ +NR + G+ R A G++ L A DA+ L A L F L PR+N+AGR++ Sbjct: 261 PLERDNRAIVHHGLRRF-AADAPLGLQVLCVDAGVDARSLTAWHLAFILAPRVNSAGRME 319 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 D ++ + LLL ++ EAR LA L LN R++ + M +A +L D L Sbjct: 320 DPTLALRLLLTEDPAEARRLARYLSRLNAQRQQATERMLAQAE---RRLALGTDDNASVL 376 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + W G+VG++ASR+ +R+ RP + A G+ +GS RSI G + +AL+ L Sbjct: 377 LVAEEGWSVGLVGLVASRLADRYQRPAVVLARDGE-LSRGSARSIDGFDIVEALDACRDL 435 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 ++ GGH+ AAGL++E + ++R L+ L + D L E+ Sbjct: 436 ----LVAHGGHSRAAGLTVETAHLRTLEERLSSLIGRTFPDGLPLPALQLDAELHANELV 491 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVG-ERHLKVMVEPVGGG--PLLDGIA 534 E A+L+ P G P P+F + + RL +HL V + ++ Sbjct: 492 PETARLIEALEPCGTGNPTPVFFIRDVSVQRPRLSRDGKHLLFDVVARDHRIVRRVGAVS 551 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 FN L +R +A+ L + + G+ L + + + P Sbjct: 552 FNGSERLDELAALRRADVAFTLRRDHWNGSERLSLEVVDFRP 593 >UniRef50_A8SRX9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SRX9_9FIRM Length = 630 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 163/625 (26%), Positives = 286/625 (45%), Gaps = 69/625 (11%) Query: 1 MKQQIQL-RRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLS 55 M+ + + +R + P++ R+ +RG+ + + G + + Sbjct: 16 MRPKWTIMSKRADFAEIGRKFGIDPVVARVITNRGICGDDNINMYLNGGADLLHDPGLMK 75 Query: 56 GVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSL----------GCSNIDY 105 + + I+ + G+RI ++ D+D DG TS + +L +R + C +DY Sbjct: 76 DLPEGCRIVMDKLENGSRIRIISDYDVDGVTSNYILLLGLRKVWAQIHGARPEECEIVDY 135 Query: 106 LVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG 165 +P+R DGYG+ ++D A A G I+T DNGI++ +++A+++G+ VIVTDHH Sbjct: 136 DIPHRIHDGYGIKNRLIDAAKADGVDTIITCDNGIAAFEQIKYAKTIGMTVIVTDHHQVP 195 Query: 166 ----------DTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDER 215 TLP A+A+I+ DC +P K L G GVA + L Sbjct: 196 YQENGDGTKTYTLPPADAVIDNQRVDCQYPFKGLCGAGVACKFIQYLYRL---------C 246 Query: 216 NIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDA 275 I + E +++ L T D++ L NRI + ++ + PG+ AL+ ++ ++ Sbjct: 247 GIDEREIQEFFEVLGLATNCDMMDLVDENRIFVKYALESLKDSR-NPGLNALMRLSGKNE 305 Query: 276 QKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQG 335 +K+ DLGF +GP +NAAGRL D + LL N +A A EL +N RK + + Sbjct: 306 KKITTYDLGFLIGPCINAAGRLGDARTSLEFLLEKNAAKAETKAAELIQINNDRKSMTEN 365 Query: 336 MQIEALTLCE------KLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFA 389 + E ++ + + Y P+ H+ VVGI+AS++KE + RPV+ F Sbjct: 366 GVKLITKMLEDATIAGEIGDTATLADHVIVAYIPDVHESVVGIIASKLKEAYSRPVMIFT 425 Query: 390 PAGD-GTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQR 448 + G LKGSGRSI+ +M + L R+ + + FGGHAMAAG S+E + ++ Sbjct: 426 DSEHAGILKGSGRSIESYNMYEHLSRVKSYFRE----FGGHAMAAGFSIESSRLGELRRV 481 Query: 449 FGELVTEWLDPSLLQGEVVSDGPLSPAEM---TMEVAQLLRDAGPWGQMFPEPLFD-GHF 504 E L + +V D + + +M + + L P+G+ + LF + Sbjct: 482 LNEQCA--LTDEDITPKVRIDVGMPLQYLARQSMRITEQLYLLEPYGKGNRKALFGQANV 539 Query: 505 RLLQQRLVGERHLKVMVEPVGG-GPLLDGIAFN------------VDTALWPDNGVRE-- 549 + + ++G+ + + G ++ I F+ R Sbjct: 540 PVRKASILGKNRNLLKLVLDIGENQYMEAIYFDPDEFVNNIKQWFGADECDKMLNGRPNK 599 Query: 550 --VQLAYKLDINEFRGNRSLQIIID 572 + + Y +INEFR R++QI ++ Sbjct: 600 VVIDMVYYPEINEFRNTRNVQIRLE 624 >UniRef50_Q6MKZ4 Single-strand DNA-specific exonuclease n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MKZ4_BDEBA Length = 575 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 163/585 (27%), Positives = 287/585 (49%), Gaps = 23/585 (3%) Query: 1 MKQQIQLRRREVDETA--DLPAELPPLLRRLYASRGVRS----AQELERSVKGMLPWQQL 54 M LR E + ++ + P L+ ++ A+RG + L + + L Sbjct: 1 MNPLWTLRESENEPVIPSNVEGQWPKLITKVLAARGFAEASHVEKLLFPKLADLKDPLVL 60 Query: 55 SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDG 114 G+ +A+E L A+ +I + DFD DG + AL M +LG ++ + P R +G Sbjct: 61 KGMSQALERLGQAYLNKEKICIYADFDLDGTSGLALLKTGMLALGFPDVLHYQPKRLAEG 120 Query: 115 YGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAI 174 YG V++ +G LI+TVD GI++HA ++ A LG+ VI+TDHHLP DT+P+A + Sbjct: 121 YGFHAHAVEELKKQGVSLIITVDVGITAHAAIDKANELGVDVILTDHHLPADTIPSAFVV 180 Query: 175 INPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 +NPN DC L G GVAFYL+ L+ D + N +L E+LD +GT+ Sbjct: 181 VNPNQGDCPSGLGYLCGAGVAFYLLRGLKRHFHDHPQLPKNNW---DLKEVLDYFTIGTL 237 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 D+VPL +NR+L G+ ++ K R G++ALLE + + L + D+ P+LNA Sbjct: 238 TDMVPLVDDNRVLVKHGLVKLAETK-RAGLRALLEELDLTGRPLTSQDVAIRFAPKLNAL 296 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 R++ + + + L D+ +AR + ++ N TR +++ + EA L + Sbjct: 297 SRMESGILPIDIFLLDDPSQARDMVRQVMKNNSTRVQLQGDAEAEAQQLLQGWPHQD--- 353 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA-LE 413 + + +H+GV+G++A+++ + +++P A DG + GS R QG ++A L Sbjct: 354 --FVFVASRNFHRGVLGLIATKLTQVYNKPAFVGAVGDDGMIVGSARLPQG---QEACLV 408 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 + ++ +FGGH+ AAG + E K F + + ++ L E+ D Sbjct: 409 EAMSSAQELLSRFGGHSAAAGFEIAETKVSTFVGKLADHFSD-LREKPKPLEIFYDVEAG 467 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 +E++ + + GP+G F PL + ++L +R + HL++ + GG + Sbjct: 468 LSEVSEALMKWYDFVGPFGAGFSIPLIHFTNVQVLSKRELKGGHLRLKIADADGGASAEA 527 Query: 533 IAFNVDTALW--PDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + F N + +L N F G +++QI+I ++ Sbjct: 528 LLFTPTPRQLDTLTNVPGFYHVLGELQWNYFAGQKTVQILIRDLK 572 >UniRef50_B9L1D5 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1D5_THERP Length = 561 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 166/589 (28%), Positives = 257/589 (43%), Gaps = 46/589 (7%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQLSGV 57 + + R E + PLL + RG+R+ +E+ R ++ + L Sbjct: 3 RYRW--REPERVPEMARELAVHPLLAAVLYRRGIRNHEEVRRFLQPHLSDLPDPAALPDS 60 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 +AV ++ ++V GD+D DG T+T L G + + +VP+R DGYG Sbjct: 61 GRAVSLVEEVRCRSRPVVVFGDYDVDGLTATTLLAQLFGEFGLT-VIPMVPHRLRDGYGF 119 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT-LPAAEAIIN 176 V L+VTVD G + G+PVIV DHH D P A ++ Sbjct: 120 QRHHVPGVLEHRPALLVTVDCGTGDWDALRDVLRAGVPVIVLDHHAVHDEAWPDELAFVS 179 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 D ++L+ VGVA+ L + + L LVALGTVAD Sbjct: 180 VARPDAPPVFRTLSAVGVAYQFARLL--------------LGNEAASRWLPLVALGTVAD 225 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRD---AQKLAASDLGFALGPRLNA 293 VVPL NR L G+ R G++ L ++ D Q+L + G+ LGPRLNA Sbjct: 226 VVPLVGINRTLVALGLKRFWET-APLGLRTLARLSGLDSARGQRLTSWHCGYVLGPRLNA 284 Query: 294 AGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDT 353 AGR+DD + + LLL + A LA +L+ LN R+ + M EA + L + Sbjct: 285 AGRMDDPRLALELLLTADAQRAEELARKLNELNALRQRAIERMLAEAEQRIDALG----S 340 Query: 354 LPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 413 LP L + W G+VG+ AS++ R+ RPV+ A + +GS RSI G + AL Sbjct: 341 LPPVLVLADSAWSVGLVGLAASKLVSRYARPVVLLARESE-VSRGSARSIDGFDIAAALA 399 Query: 414 RLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLS 473 R L ++ GGH AAGL++E ++ + R E+ E L + D L Sbjct: 400 RCRDL----LIDHGGHHAAAGLTVETERIAELEARLLEIAAEHLGQEEPALPLELDAELH 455 Query: 474 PAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLV------GERHLKVMVEPVGGG 527 P ++ +E ++L P+G P P F + R V ERHL+ V G Sbjct: 456 PYQIALETWEVLAQLEPYGHGNPVPRFL----VRDVRAVDITSTQNERHLRFTVVAPDGT 511 Query: 528 PLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 + F + + +A+ L +++ G +++ + +I P Sbjct: 512 VR-QAVWFEGGREIARLARAGRIDIAFTLRRSDWNGQERVELDVIDIRP 559 >UniRef50_B2V9Q3 Single-stranded-DNA-specific exonuclease RecJ n=5 Tax=Aquificales RepID=B2V9Q3_SULSY Length = 574 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 165/589 (28%), Positives = 279/589 (47%), Gaps = 42/589 (7%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYAS-RGVRSAQE----LERSVKGMLPWQQLSGV 57 Q I L + L + + ++ + R + + +K ++ + Sbjct: 9 QWIDLSKTNPAPDF-LVKKYGEIFAQVLYNRRDLFDKDFSQDYIFPELKNLVNPSYFHSL 67 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 E+A L + T I+V GD+DADG TST+L + + LG N Y +P+RF +GYGL Sbjct: 68 EEAAIKLAEHIKRKTPIVVYGDYDADGITSTSLLINFFKDLGV-NAKYYIPSRFSEGYGL 126 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP--------GDTLP 169 + E + + G ++++ D+G ++ + +A+SLG+ V V DHH P L Sbjct: 127 NKEAIKKLSEHG-KVLIVCDSGTNAFDELFYAKSLGLEVFVLDHHEPSYLWQNYTPPFLS 185 Query: 170 AAEAIINPNLRDC---NFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL 226 IINP N K LA VG+AFYL+ R L L + L Sbjct: 186 EKINIINPKFYSDEQINPLFKHLATVGIAFYLIAITRRLLNIDI----------KLRDYL 235 Query: 227 DLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFA 286 D+VA+GTVADVVP+ NR++ G+ + + R GIK LL VA ++L + D+GF Sbjct: 236 DIVAIGTVADVVPMSFINRVMVKIGLEELNK-QKRAGIKELLNVARV-KKELTSQDIGFI 293 Query: 287 LGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEK 346 +GPR+NA+GRL D V LL+ + A VLA EL+ LN+ R+++ + EA K Sbjct: 294 IGPRINASGRLADARNSVKLLVTRDQSRANVLAIELENLNKKRQKLTDNVISEAEKELLK 353 Query: 347 LERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGL 406 + + + WH GVVGI A R+ E++ P + + +G GS RS+ + Sbjct: 354 QDLKN-----VIVIGKEGWHSGVVGIAAGRLTEKYKLPSVILS-VNNGKAVGSARSVSKV 407 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 ++ AL++ L+ KFGGH+MAAG+SL+ + ++R + V E + Sbjct: 408 NIYKALDKCRDLFD----KFGGHSMAAGMSLKTNLIPELKERLNQAVEE-VAEEKPWAVK 462 Query: 467 VSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGG 526 D + + T E + + + P+G+ P P F ++ ++L ++ Sbjct: 463 EIDMEVELSYWTTEKVKEIYNLQPFGEKNPIPKFLARNLKIEFFTNPAKNLLILNLKDEN 522 Query: 527 GPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + ++ L + + + Y +IN ++G +L ++D++ Sbjct: 523 KNIYNAKSWKAKELLDKLSVGMIIDIVYTPEINYYKGFENLDFVVDDLK 571 >UniRef50_D0EM60 Single-stranded-DNA-specific exonuclease n=3 Tax=Deinococcus RepID=D0EM60_DEIRA Length = 705 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 177/577 (30%), Positives = 276/577 (47%), Gaps = 54/577 (9%) Query: 5 IQLRRREVDETAD---LPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAV 61 L + ++ P + ++ R +R+ + L ++ +A Sbjct: 7 WLLAPPASRDALLATMREWQVSPPVAQVLCGRDLRT-ELLALPLELTPNPAL----REAA 61 Query: 62 EILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEV 121 + A REG RI + GD+DADG ++TA VL +R++G +N+ +P+R +GYG+ P+ Sbjct: 62 RHIVAAVREGKRIRIHGDYDADGVSATATLVLGLRAIG-ANVHGFIPHRLNEGYGIHPDR 120 Query: 122 VDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRD 181 V + A A L+VTVD G+S+ V+ + G V+VTDHH PG+ P +++P+L Sbjct: 121 VPEHAAA-ADLVVTVDCGVSNLDEVKSLLATGTEVVVTDHHAPGENFPECL-VVHPHLTP 178 Query: 182 CNFPSKS-LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 P + L G GVA++L+ A+ L P LL L LGTVADV PL Sbjct: 179 DYDPDRHNLTGAGVAYHLLWAVYEELGR-----------PEPRALLPLATLGTVADVAPL 227 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 NR L G++ + + PG++AL+ ++ A D+ F L PR+NAAGR+ + Sbjct: 228 LGENRALVRAGLAEMARTEL-PGLRALMNEKRV--RQPTARDVAFILAPRINAAGRMGEA 284 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 + LL + EA+ LA L+ NQ R++I+ M +AL L D L + Sbjct: 285 DRALELLTTPSDHEAKSLAAYLEIRNQERRKIQDDMFAQALQLA-------DPNDPALVL 337 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 H +WH GV+GI+AS++ E F+RPV A KGS RS G+ L L Sbjct: 338 THDDWHAGVMGIVASKLVETFNRPVYIVAQ-----GKGSVRSTPGISAVQGLRESRDL-- 390 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 + +FGGH AAG SL+ F ++R V ++ P V D PL A +T E Sbjct: 391 --LGRFGGHPGAAGFSLDPQNFGALRERIHGYVRQFPTP---VPAVRLDAPLPVAALTPE 445 Query: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA 540 + L P+G+ P PL+ L RLVG++ + GG + + Sbjct: 446 LLSELSILEPFGEGNPRPLWHLRGPLTDTRLVGKQGDVLQFRF--GGVK------GMKYS 497 Query: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI 577 D +A +L +NE++G SL++ + P+ Sbjct: 498 ERDDAAGER-DVAAELALNEWKGRTSLELHAAALRPL 533 >UniRef50_A8EWZ8 Single-stranded DNA-specific exonuclease n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EWZ8_ARCB4 Length = 522 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 152/548 (27%), Positives = 271/548 (49%), Gaps = 38/548 (6%) Query: 28 RLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATS 87 L ++R V + + + P ++ A + + A E I +VGD+D DG S Sbjct: 11 ELLSARHVNNP---YSKLADIPPPTSFKDIDIATKRIKKAILENETITIVGDYDVDGIVS 67 Query: 88 TALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVE 147 T + + + + +++++PNRFE GYGLS ++VD +G L++TVDNGIS++ Sbjct: 68 TTIMLDFFKQINI-KVNHIIPNRFEHGYGLSTKIVD-LIEKG--LVITVDNGISAYEASL 123 Query: 148 HARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLR 207 + I +I+TDHH G+ +P A AIINP +DC FP K + G VA+YL A++ + Sbjct: 124 KLKEKNIDLIITDHHTVGEKIPEALAIINPKQKDCTFPFKDICGAQVAWYLCAAIKKEMN 183 Query: 208 DQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKAL 267 N+++ LDL+ + +AD++P+ A N +T QG+ ++ R K L Sbjct: 184 LNV----------NMSDYLDLLCIAIIADIMPMTALNYTITKQGLKKL-KSSSREAFKLL 232 Query: 268 LEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQ 327 + + L + D+GF + P+LN+AGR+DD ++ + LL ++ A + LD LN Sbjct: 233 NSI--LSKESLISDDIGFFIAPKLNSAGRMDDATIALDFLLSEDSFSANESLSLLDELNN 290 Query: 328 TRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIA 387 RK +++ + +A D + ++ WH+GV+GI+AS++ + +P Sbjct: 291 YRKTLQEDISNKANLKI-------DKNKNAIIVWDENWHEGVIGIVASKLSNLYKKPAFI 343 Query: 388 FAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQ 447 F + KGS R+ +++ + + + L ++ FGGH AAGLSL+ + + F++ Sbjct: 344 FTVQENDIAKGSVRANSNINLYELISKASHL----LIGFGGHKNAAGLSLKLENIEEFEK 399 Query: 448 RFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF-DGHFRL 506 E + + L E+ + G L + + +E ++ P+G P+F + L Sbjct: 400 IINEELENF--KDDLHIEIDTLGELDVSSVDLEFLSIIEGFEPYGLENHRPIFKISNVNL 457 Query: 507 LQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRS 566 ++ L+G + + G + + I FN N + L + NEF+G + Sbjct: 458 VKYDLIGRDKNHLKLTLDSNGVIFEAIKFNDSNK----NIPNILNLIVSVAKNEFKGVIT 513 Query: 567 LQIIIDNI 574 Q +I I Sbjct: 514 PQFLIQEI 521 >UniRef50_A9BAH9 Single-stranded DNA-specific exonuclease n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BAH9_PROM4 Length = 625 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 155/573 (27%), Positives = 281/573 (49%), Gaps = 31/573 (5%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG--MLPW-QQLSGVEK 59 + I E+ P E+P +++ + RG+ ++ V+ + ++ Sbjct: 7 KWITPLPVCFSESI--PKEIPHIIKSILLRRGLTHINDINDLVEPPDLPDPTDHFPDLDI 64 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 A E + +A +I + GD+DADG TST+L V + L S I + +P+R E+GYGL+ Sbjct: 65 ASERIISAINNNEKIAICGDYDADGMTSTSLLVDFLLRLDGSPIPF-IPSRKEEGYGLNR 123 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 +V++ G +LI+TVDNG+S+ +E A+S GI VI++DHH + LP A+I+P+ Sbjct: 124 NIVEKIRREGIRLIITVDNGVSAIYEIELAQSYGIDVILSDHHEIKENLPNLLALIHPST 183 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 + P K LAGVG+A+ + + + L+ DL +GTVAD+ Sbjct: 184 IPYSSPYKYLAGVGLAYLIAQTIAIKRN----------STDKLSLSKDLFCIGTVADMAK 233 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 L NR + K + G+K+LL A + + + D+ F + PR+N+ GR+ + Sbjct: 234 LKGANRYWLKSWTPNLINTKSK-GLKSLLSKAKLNNKNITTEDIAFRIAPRINSVGRISE 292 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 S+ + L L + R + N+++ +N+ RK + EA+++ E + + L + Sbjct: 293 PSLILKLFLEKDHISIREIVNKIENINKERKLLCNQTTSEAISILES---NSEVLNPFIV 349 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 + WHQGV+GI+A++I ER++RP A +G L+ S RS + + AL++ + Sbjct: 350 LAQNHWHQGVIGIVAAKIMERYNRPTAILASDKNGFLRASVRSPKSFNALAALKKCSQI- 408 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 + KFGGH+ A G +++ +K L Q + E + WL + + + + + ++T Sbjct: 409 ---LHKFGGHSAAGGFTIKAEKISLLQSKLNESASHWLS-NNSKPTIEPECYVEFDQITN 464 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD 538 ++ L+ P+GQ P PLF +L++ H ++ G ++ I +N + Sbjct: 465 QICNYLKLLEPFGQGNPAPLFWTRGCTILKKETFYSGHQ--LLHLKQGKSIVKAINWNSN 522 Query: 539 TALWPDNGVREVQLAYKLDINEFRGNRSLQIII 571 + +A+ +D + QI I Sbjct: 523 K---FTTYPSSIDIAFYIDYENYFNTDKHQITI 552 >UniRef50_C2D7P8 Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7P8_9ACTN Length = 1180 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 158/581 (27%), Positives = 260/581 (44%), Gaps = 31/581 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV-----KGMLPWQQLSG 56 + Q+ R E+++ LP L+ R+ SRG + +++ER + + + + G Sbjct: 9 RWQLLSRDLELEDKLINTCRLPRLVARVLVSRGYTTQEQIERFLIASLERDWVNPLFIPG 68 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + + + +A RI+V GDFD DG +TAL A+++LG + + +P+R +GY Sbjct: 69 LAAVADRVQHALDSHERIVVFGDFDVDGICATALLTDALKTLG-ACVYPFIPSRVHEGYS 127 Query: 117 LSPEVVDQA-HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAII 175 LS D+ A LI+TVDNGI +H ++ G+ V++TDHH P Sbjct: 128 LSKAAFDRLVAAYNPNLIITVDNGIDAHEQCLYSIQHGVDVVITDHHEPTSQTLPVVPTA 187 Query: 176 NPNL-RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTV 234 NP L C LAG GVA L+ L + + LD+ LGT+ Sbjct: 188 NPKLNPSCAS--FELAGAGVALKLVDVLGAAYGKPYLW----------KDYLDVATLGTI 235 Query: 235 ADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAA 294 +D V L NR L +G+ IRA R G+ AL V D +L +L PRLNAA Sbjct: 236 SDRVKLTPENRALVTEGIRCIRAS-SRLGLSALARVCGIDIHATMPEELASSLIPRLNAA 294 Query: 295 GRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTL 354 GRLD + LL ++ EA ANEL+ LN R+ +E+ EA + + + + Sbjct: 295 GRLDRVQTAYNLLQAQSLSEAYTYANELEELNICRRNLEKKACDEAFEQAKDVVKQQ--- 351 Query: 355 PGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALER 414 + + +W++GV+GI+ASR+ + P A + A G+ K SGRS+ +++ D + Sbjct: 352 KHVIFVSSSQWNEGVIGIVASRLARAYELPAFACSIA-QGSAKCSGRSVGNVNLFDVV-- 408 Query: 415 LDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSP 474 + +++FGGHA A G + D Q + + L S L P+ Sbjct: 409 --ERFGSQLIRFGGHAAAVGFTCSPDILPTIIQHVERTI-DALPASALYAPRELVIPVDL 465 Query: 475 AEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGERHLKVMVEPVGGGPLLDGI 533 +E+T+ L P+G P+F + + + VG + + L I Sbjct: 466 SEITVSDLDSLEMLQPFGSGNERPIFAAHNIEMRNKMRVGAHNNHMRFVAQQHKVRLSSI 525 Query: 534 AFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 F + + + ++G +++I +I Sbjct: 526 VFKASHIQNLMSLHDTCDIVFNPVNEVWQGRVKPKLMIKDI 566 >UniRef50_B5ZFU4 Single-stranded-DNA-specific exonuclease RecJ n=12 Tax=Acetobacteraceae RepID=B5ZFU4_GLUDA Length = 619 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 193/589 (32%), Positives = 285/589 (48%), Gaps = 30/589 (5%) Query: 3 QQIQLRRREVDET-------ADLPAELPPLLRRLYASRGVR---SAQELERSVKGML-PW 51 ++ R + + A + ++ ++ A+RG+ +A L+ +++ ++ Sbjct: 38 RRWLWRDPVLADAGGRVGLMIAQQAGVSDIVGQMLAARGLDGRSAATFLDPTLRALMPDP 97 Query: 52 QQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRF 111 L ++ A E L +A R G + V GD+D DGA + AL +R LGC + VP+R Sbjct: 98 SALRDMDPAAERLADAVRRGETVAVFGDYDVDGACAAALVTQLLRDLGCP-VLTHVPDRM 156 Query: 112 EDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAA 171 +GYG + ++ ARGA L+V VD G ++ + +IV DHH P Sbjct: 157 TEGYGPNAPALEALAARGATLVVCVDCGTAAGDILAGLAGR-ADIIVLDHHKAEGPPPPV 215 Query: 172 EAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVAL 231 A +NPN DC + L GVAF +A LR GWF R P+L LD+VAL Sbjct: 216 LATVNPNRLDCTSGQRGLCAAGVAFLAAVATVRTLRRAGWFAAR--PEPDLMAFLDIVAL 273 Query: 232 GTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRL 291 TV DV+PL NR L QG+ + + R G+ ALLEVA L+A GFALGPR+ Sbjct: 274 ATVCDVMPLTDLNRALVTQGLKILARRQ-RTGLDALLEVAG-ARDPLSAFTCGFALGPRI 331 Query: 292 NAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSR 351 NA GR+ + +G+ LLLCD+ EAR LA LDA+N+ R+ +E + A+ + Sbjct: 332 NAGGRIAESGLGLDLLLCDDAAEARRLAERLDAVNRRRQTVETTILDRAMDEAASQRAAG 391 Query: 352 DTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDA 411 G L + +WH GVVGI+A RIKERF+RPV+ A DGT+KGS RS+ L + A Sbjct: 392 R---GVLLLSGRDWHPGVVGIVAGRIKERFNRPVLVGAELEDGTVKGSSRSVADLDLGAA 448 Query: 412 LERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGP 471 + + G++ GGHAMAAG SL + + + +G Sbjct: 449 I--IAARQAGLLTTGGGHAMAAGFSLPREGVPALHDFLEARLAGATALPDATDVL-IEGV 505 Query: 472 LSPAEMTMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVG--ERHLKVMVEPVGGGP 528 + A T E+A + P+G EP+ R+++ +G L+V+VE GGGP Sbjct: 506 VHVAGATTELATDIGRLAPFGAGNDEPILAIPRVRVVRADRIGREGNTLRVLVEGEGGGP 565 Query: 529 LLDGIAFNVDTA----LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 L + F D + D + LA L + G S I + Sbjct: 566 RLKALLFRADDHPATPILEDRNAPPLHLAGWLRAESWNGRVSAGFFIRD 614 >UniRef50_Q253D9 Mg-dependent 5'-3' ssDNA-specific exonuclease n=16 Tax=Chlamydiaceae RepID=Q253D9_CHLFF Length = 589 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 151/580 (26%), Positives = 267/580 (46%), Gaps = 25/580 (4%) Query: 5 IQLRRREVD--ETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVE 58 ++ L P+ +++ SRG ++ E+ + + + L + Sbjct: 14 WVYPKQNPILLSVIIKELHLHPIAAQIFVSRGFQTVDEVRDFLYVHLSNLHDPELLLDMS 73 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 KA+E L A I+V GD D DG + AL V ++S+ + Y G Sbjct: 74 KAIERLLLAKERNEHIMVYGDSDVDGISGVALLVEFLKSIDV-RVSYCFLGALLKHSGEP 132 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 ++ + G L++TVD GI++ V GI VI+TDHH+P +P A +NP Sbjct: 133 SSLIAKMKEEGISLLITVDCGITAGKEVSDINKQGIDVIITDHHMPTGKIPHCIATLNPK 192 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 L+D +P+K L GVGVAF L + L + + +L LLDLV LGTV DV Sbjct: 193 LKDRAYPNKELTGVGVAFKLARGVLNALEKKNPSIK-----VDLKRLLDLVTLGTVTDVG 247 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 L NR + G+ I G R G+ L + ++ ++D+ + P+LN+ GRL Sbjct: 248 TLLGENRTMVRHGIKEISKG-SRLGLHKLCVFSGVKPSEVTSTDIVLKIAPKLNSLGRLA 306 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 D S GV LLL ++ A + LD +N+ R++IE + + + + + Sbjct: 307 DASKGVELLLTEDPEVANDIIQYLDKINKERQKIEADVFHDVQKILKS--NPSIVKQAAI 364 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + EWH V+ I+++R+ + +++PV + G G KGS R+I + L++ +L Sbjct: 365 VLSSKEWHSRVIPIISARLAKAYNKPVAIISNQG-GVGKGSLRTIGSFPLLGILQKCSSL 423 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 + + +GGH AAG+ + ED+ + F+++F LV L + D E+ Sbjct: 424 F----VSYGGHDFAAGIIINEDQIEPFRKKFIHLVNSSLKKDKAVITLSLDARAEFDEID 479 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 ++ + P+G+ P P+F ++ +L+ HLK+ + G L+GIAF + Sbjct: 480 HDLLSSIDLFEPFGKGNPVPIFYTVVRQVRYPKLLPGNHLKLYINH--GERNLEGIAFGL 537 Query: 538 DTALWPDNG--VREVQLAYKLDINEFRGNRSLQIIIDNIW 575 + + ++LAY +++ + +++ + Sbjct: 538 GDRIDALKANWNKPLELAYTPRLSKSSNGGVIHLLVRDFR 577 >UniRef50_C7H0U6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0U6_9FIRM Length = 542 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 152/560 (27%), Positives = 271/560 (48%), Gaps = 28/560 (5%) Query: 22 LPPLLRRLYASRG--VRSAQELERSVKGMLPW-QQLSGVEKAVEILYNAFREGTRIIVVG 78 + R+ + R + +E + +L +++AV + A +I + G Sbjct: 3 YSKVFSRILSLRKDIIGDPEEFFSPTPQLTHPADELYSIDEAVSRIAKACENNEKITIYG 62 Query: 79 DFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN 138 D+DADG TST + + +++ G ++++Y +P+R ++GYG+S E +++ G LI++VD Sbjct: 63 DYDADGVTSTGIMFMFLKAAG-ADVEYYIPSRMDEGYGISIEAINKIKETGTTLIISVDC 121 Query: 139 GISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYL 198 G +S+ E+A S+G+ V++TDHH D +NP + +AGVGVAF + Sbjct: 122 GSNSYEEAEYAESIGMDVVITDHHTV-DKHHYEGINVNPKHPKSSCAFPQIAGVGVAFKV 180 Query: 199 MLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAG 258 + L+ L N+ L E LDLVA+GT+AD++P+ NR G+ ++ Sbjct: 181 LQQLQRKL---------NLDKRVLLETLDLVAIGTIADIMPVYDENRTYIKYGLLKMNKN 231 Query: 259 KCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVL 318 G++ LL +++ + D+ F + P +NAAGRL++ S+GV L + D+ A L Sbjct: 232 P-NLGLRCLLRELGIADREIKSDDVSFRIAPCINAAGRLENASIGVELFITDDEKRAMTL 290 Query: 319 ANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIK 378 A +L LN RKE++ + + ++ + L + H GV GI++ ++K Sbjct: 291 ARDLVNLNTKRKELQVAEVKRSKEKMVETGADKNAILLTL-----DIHSGVAGIVSGKLK 345 Query: 379 ERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLE 438 E F + I GDG LK SGRS + + L + LY + FGGH+ A G +++ Sbjct: 346 EDFGKVAIVMVDTGDGYLKASGRSPDAIDLYQLLLKFQDLY----VNFGGHSAACGFTIK 401 Query: 439 EDKFKLFQQRFGELVTEWL--DPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 + +F++RF V + + DP L+ D + ++M +E+A L+ P+G++ Sbjct: 402 KSDENVFRERFYRAVDDMVEADPGSLKKNYKYDLKVDVSDMNLELASELKMLEPYGKLNE 461 Query: 497 EPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN-VDTALWPDNGVREVQLAY 554 + F +G + L+ + FN + + + + Sbjct: 462 DIRFLIEDVVPFNMIYLGRDSRHIKFFLKQARNTLECMCFNAAAEVINMIEEQKHISIIG 521 Query: 555 KLDINEFRGNRSLQIIIDNI 574 K NE+RG S QI + +I Sbjct: 522 KFGANEYRGKLSPQITVSDI 541 >UniRef50_D1AL25 Single-stranded-DNA-specific exonuclease RecJ n=4 Tax=Fusobacteriaceae RepID=D1AL25_SEBTE Length = 560 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 145/580 (25%), Positives = 272/580 (46%), Gaps = 27/580 (4%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGML----PWQQLSG 56 M+ ++ E ++ L+ L +RG+ + +++++ + + Sbjct: 1 MRWELLNYNDEYIQSKSKEFHTDKLITELLLNRGITNKEDVDKFLNPSMENINDPFLFED 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +E+ VE + A + +I + GD+D DG + TA ++ +R+LG NIDY + NR +G Sbjct: 61 MERIVERIIIARKNKEKIFIYGDYDVDGISGTAYLIIVLRNLGI-NIDYFIQNRVHEGSK 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 ++ V+ R A+L++TVD S +E GI +I+TDHH + L IN Sbjct: 120 INKHFVNYIKKRNAKLVITVDTSFGSTEEIELLTKNGIDLIITDHHRQTNKLKLDVKTIN 179 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 P + +P K L+G G+A+ L A+ L ++ L + +D+V +GTVAD Sbjct: 180 PKISK-TYPFKHLSGSGMAYKLADAVYERL---------GVSKKILHDYMDIVMIGTVAD 229 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 VVP+ NR + QG++ +R K + G++ L+ +A + SD+GF + P LNA GR Sbjct: 230 VVPMTDENRFIIKQGLANLRKTKVK-GLEYLIVYLKLNAYSINTSDIGFYIAPMLNALGR 288 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 +D + V + + + E+ N+ R+ +E + E K+ P Sbjct: 289 IDSSKMVVDFYIEKDDFRIFNIIEEMKRANKIRRYLEINIYNEIEEKIAKMREK----PK 344 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 + M +WH GV G+++SR+ +++ PVI + +G K S RS++GL++ D L+ + Sbjct: 345 YIFMKSKKWHSGVTGVVSSRLSLKYNIPVIIISI-KNGYGKASCRSVEGLNIFDILKEIS 403 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 + +FGGH +AAG + E ++ + L+ S ++ + + D LS Sbjct: 404 HKFE----RFGGHDLAAGFLVTEKVLFQIEKYLKNKLY-RLNKSDIEKKFLIDSYLSIEN 458 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLF-DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 + + + + P+G EP F D + LL G V G L I + Sbjct: 459 INKTLVKEINKLSPFGLDNQEPNFTDNNVTLLNYTKFGVDSRHFKGMVVKGNKKLPVIGY 518 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 N+ + N +++++ Y + + + +++ + + Sbjct: 519 NLGDKIDTKNSGKKIEILYTPVLKYGKNDFFIELKLKDFK 558 >UniRef50_A5VFK4 Single-stranded-DNA-specific exonuclease RecJ n=10 Tax=Sphingomonadales RepID=A5VFK4_SPHWW Length = 588 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 192/583 (32%), Positives = 290/583 (49%), Gaps = 28/583 (4%) Query: 3 QQIQLRRREVDETADLPAELPPLLRRLYASRGV-RSAQELERSVK---GMLPWQQLSGVE 58 R + D E L+ +L +RG R A EL R M ++ Sbjct: 17 WHW---RGGTVDGIDAGFEADDLITQLLLARGCPREAVELHRLPTIRGFMPDPSIFRDMD 73 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 +A L +A G + + GD+D DGATS AL + +R LG + +P+R +GYG S Sbjct: 74 EAAARLADAVEHGEPVTIFGDYDVDGATSAALLIRLLRDLGL-RAGFYIPDRLMEGYGPS 132 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 E + + G +LIVTVD G + ++ A GI VIV DHH LP A A++NPN Sbjct: 133 GEALLKIGEGGTRLIVTVDCGAQAFEALKLASDAGIDVIVVDHHKCAAELPRAFALVNPN 192 Query: 179 LRDCNFPS--KSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 D + LA VGVAF L AL LR + +F R A P L +LLD+VALGTVAD Sbjct: 193 RLDEGEGAAHGHLAAVGVAFLLGAALLRVLRARNFFATR--AEPKLIDLLDIVALGTVAD 250 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 V L NR QG+ + AG+ G+ AL+E + + +DLGFALGPR+NA GR Sbjct: 251 VASLRGLNRAFVAQGIKVM-AGRRNIGLAALIEASRLERAP-TCTDLGFALGPRINAGGR 308 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + +GV LL ++ EAR +A ELD LN+ R+ IE+ +Q EA TL Sbjct: 309 VGKSDLGVRLLTTEDRDEARTIAAELDRLNEERRAIEKAVQEEAETL-----SGSQGNRS 363 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLD 416 + WH GV+GI+A R+KE+ RP + A DG KGSGRSI G+ + A+ Sbjct: 364 VAVVAAGGWHPGVIGIVAGRLKEKLGRPALVIALDKDGVGKGSGRSIGGVDLGAAILAAK 423 Query: 417 TLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAE 476 + G+++ GGHAMAAG+++ E + + + ++ D ++P Sbjct: 424 DM--GLLVAGGGHAMAAGVTVAPGGVDALADFLEERLASDVARARDDRALLLDAVVAPGG 481 Query: 477 MTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 +T + + L GP+G +P P R+++ +VG+ H++ +V G + IAF Sbjct: 482 VTPSLVEALEAGGPYGAGWPAPRIAAGAVRVIKADVVGQGHVRTIVSGRD-GRSIKTIAF 540 Query: 536 NVDT-----ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 AL R + +A + ++++ + ++ +++ Sbjct: 541 RAADSALGQALLGAGPDRTLWIAGRPKVDDWGSRPAAELHVED 583 >UniRef50_A5FY25 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Alphaproteobacteria RepID=A5FY25_ACICJ Length = 594 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 179/586 (30%), Positives = 283/586 (48%), Gaps = 25/586 (4%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGV---RSAQELERSVK-GMLPWQQLSGV 57 + + + +P ++ RL A RGV +A LE +++ + L+ + Sbjct: 22 RWLWRPAADRTAQAIAQRCGVPEVIGRLLAGRGVMPDHAADFLEPTLRAYLPDPSALTDM 81 Query: 58 EKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGL 117 + A + ++ + G I + GD+D DGA S AL L + LG + I+Y VP+R +GYG Sbjct: 82 DAAAARIADSVQRGATIAIFGDYDVDGACSGALMALGLGELGATTINY-VPDRLREGYGP 140 Query: 118 SPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINP 177 + + +GA+LIV VD G ++H + IV DHH PA A +NP Sbjct: 141 NAPALRALAGQGAELIVCVDCGTAAHEALAALDGR-ADAIVLDHHKSEGAPPAIVATVNP 199 Query: 178 NLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADV 237 N D ++ ++F ++A++ LR +G+F R +L +LDLVAL TV DV Sbjct: 200 NRADDASGLGNVCAATISFLTLVAVQRELRRRGFFATRR--EIDLLSMLDLVALATVCDV 257 Query: 238 VPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRL 297 +PL NR L QG+ + + RPGI ALL+VA GFA+GPR+NAAGR+ Sbjct: 258 MPLTGLNRALVTQGLKVMARRE-RPGIAALLDVAQVREAPGTM-TCGFAIGPRINAAGRI 315 Query: 298 DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGG 357 + +G+ LL A VLA LD +N+ R+ +E G+ EA+T E + Sbjct: 316 AEADLGLRTLLAAEPATAMVLARRLDEINRERQAVEAGLLDEAMTDAEAQFAAG---APV 372 Query: 358 LAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDT 417 + +WH GVVGI+A RIKE F+RP + A +G GSGRS+ G+ + A+ Sbjct: 373 ALVAGEQWHPGVVGIVAGRIKETFNRPALV-AGIAEGRAVGSGRSVPGVDLGSAIIAARE 431 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEM 477 G+++K GGHAMAAG ++E + + + E + ++ +G + + Sbjct: 432 --AGLLIKGGGHAMAAGFTVEAGRIEALRGFLAERLAVAATLPDA-ADLPIEGMAAVGGI 488 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFDG-HFRLLQQRLVGER--HLKVMVEPVGGGPLLDGIA 534 +A + GP+G EP+F R+L+ +G ++ VE GG L I Sbjct: 489 DEALAAAIGRVGPFGAGNEEPVFVVPRARVLRADRIGRNEATIRAFVEGEAGGR-LKTIL 547 Query: 535 FNVDT----ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 F A G + LA + ++ G S+ +I+ + P Sbjct: 548 FRAGDGDLAAALARPGGAPLNLAGHIRAEQWNGRTSVSLILIDAAP 593 >UniRef50_B1XPL2 Single-strand-DNA-specific exonuclease n=3 Tax=Chroococcales RepID=B1XPL2_SYNP2 Length = 761 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 161/607 (26%), Positives = 262/607 (43%), Gaps = 51/607 (8%) Query: 1 MKQQIQLRRREVDETADLPAEL------PPLLRRLYASRGVRSAQELERSVKG----MLP 50 M Q+ L EV ++ E+ L +L RG L + Sbjct: 1 MNWQV-LATPEVPDSFIRRVEILTDGKGDRHLAQLLWQRGFNDENTLAGFLNPEAYAPTS 59 Query: 51 WQQL-SGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSL--GCSNIDYLV 107 +++A+ L A G ++ + GDFDADG T+T++ + + + Y + Sbjct: 60 AFAFGQEMKRAIHRLIQAKERGEKVAIWGDFDADGVTATSVLWEGLGQFFSQETQLIYYI 119 Query: 108 PNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDT 167 PNR + +GL+ +D+ GA LI+ D G ++ + HA+SL I +I+TDHH +T Sbjct: 120 PNRLTESHGLNNPGIDRLKTWGASLIIICDTGSTNLTEIAHAKSLDIDLIITDHHTLPET 179 Query: 168 LPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLD 227 P +IINP N P L+GV VA+ L+ AL L D P + +LLD Sbjct: 180 RPDVLSIINPRYFAENHPLFHLSGVAVAYKLVEALSETLPDPT--------RPPVTDLLD 231 Query: 228 LVALGTVADVVPLDANNRILTWQGMSRIRAGKC-----RPGIKALLEVANRDAQKLAASD 282 LVA+G +AD+V L + R L G+ ++ PGIKALL+ ++ + +D Sbjct: 232 LVAIGLIADLVALKGDCRYLAQVGIQALQKQTNPKTVVHPGIKALLDNCHKTGDR--PTD 289 Query: 283 LGFALGPRLNAAGRL-DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEAL 341 + F +GPR+NA R+ D S V LL G LA + + N RKEI+Q + +A Sbjct: 290 ISFGIGPRINAVSRIYGDASFCVELLTSRERGRCGYLAQQTELANARRKEIQQKVVQQAK 349 Query: 342 TLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSG 400 E L + L + +W GV+G++AS+I + F RP I + KGS Sbjct: 350 AQIETL---DLSTTSVLVLCDAQWQGGVLGLVASQIAQTFGRPTILLTYDPEQDLWKGSA 406 Query: 401 RSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDP- 459 RS G+ + D ++ ++ +FGGH AAGLS+ + +F+ + + Sbjct: 407 RSAHGIDLYDLVQAQ----GHLLHRFGGHPFAAGLSVRPENLAMFKTAINQQARQQWGSS 462 Query: 460 -SLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGE---- 514 QGE+ D ++ A++ + Q L P+G P+P L + Sbjct: 463 IETHQGEITIDLVVAIADLGESLFQSLECLEPFGMGNPKPKLLIKDCGLTVTGFSKLRDK 522 Query: 515 -----RHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQI 569 + K E + GI + + + +LD E + + Sbjct: 523 FNRKLNYFKTNFELWDETDQISGIWWGGHP--DDLTQGAGLDVVVELDRKEAQTQDQYFV 580 Query: 570 IIDNIWP 576 + + P Sbjct: 581 RLLAVAP 587 >UniRef50_A2C286 DHH family:DHHA1 domain:Single-stranded-DNA-specific exonuclease n=2 Tax=Prochlorococcus marinus RepID=A2C286_PROM1 Length = 629 Score = 487 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 155/578 (26%), Positives = 276/578 (47%), Gaps = 30/578 (5%) Query: 2 KQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPW---QQLSGVE 58 + I + D+ ++ L L+ + RG+ E + + + + Sbjct: 9 NRWILPKPINEDDITNI--NLNHTLQAVLIRRGIDLNNEFDEYITPSDLPNPEEHFDELS 66 Query: 59 KAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLS 118 KA + + NA + +I + GD+DADG TST L V + LG + + +P+R ++GYGL+ Sbjct: 67 KATQRIINACLKKEKIAICGDYDADGITSTVLLVELLSILG-AIVKPFIPSRQDEGYGLN 125 Query: 119 PEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPN 178 +++ + +G +L++TVDNGIS+ A ++ + LGI +I+TDHH D ++I+P Sbjct: 126 ENMINNINNQGIKLVITVDNGISAFAAIKKSVDLGIDLIITDHHKIPDKKLNIFSLIHPE 185 Query: 179 LRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVV 238 N P K LAGVG+A+ L + + NI +GT+AD+ Sbjct: 186 KTPINSPYKYLAGVGIAYLLAKNICEKIDYDINNSTANI----------FFCIGTIADMA 235 Query: 239 PLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLD 298 PL NR + + +I + GIK++++ + + + D+GF + P +NA GR+ Sbjct: 236 PLKGANRKWLKECLPKINSTT-NKGIKSIMKKLSIHNVDITSDDIGFKIAPLINAVGRIG 294 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 D ++ + L + L N+ +N+ RK + ++ EAL + RS L Sbjct: 295 DPNLIIDLFTNKSNDSVVKLTNDCFNMNRERKRLTSLVEQEALEIAVSEYRSDR---KFL 351 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTL 418 + EWH G++GI+A+RI E+F+ P A A DG +GS RS L + AL D L Sbjct: 352 VLTKREWHPGIIGIVAARIAEKFNLPTALLAQANDGNFRGSIRSNNKLMVNQALAECDDL 411 Query: 419 YPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMT 478 ++ GGH+ AAG S++ + +++ ++ L + D +S ++ Sbjct: 412 ----LIAHGGHSAAAGFSIKNENIDKLREKLDQIANREFKDINLYKSITPDAFISFDQIN 467 Query: 479 MEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV 537 + L GP+G M P P+F ++L + HLK+ + G ++ I +N Sbjct: 468 YNFYRQLTLIGPFGIMNPTPIFWARKCKILDIYKLKGDHLKMTL--NDGTSTIEAIKWNG 525 Query: 538 DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 T + +A+ ++IN ++ +LQ+ I +I Sbjct: 526 ST---ELKKQDLIDIAFYIEINRWKKLNTLQLNILDIK 560 >UniRef50_Q7VBV8 Single-stranded DNA-specific exonuclease n=1 Tax=Prochlorococcus marinus RepID=Q7VBV8_PROMA Length = 626 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 147/579 (25%), Positives = 284/579 (49%), Gaps = 33/579 (5%) Query: 4 QIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPW---QQLSGVEKA 60 ++ + + + L +++ + RG +S +++ ++ P + A Sbjct: 5 TWEIPKHIDFHSIEYDY-LGTIIKEILYRRGFQSKSDIQNFIEPSKPPNALFHFPFLNIA 63 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 E + +A + I + GD+DADG TSTAL + + L I L+P+R +DGYGL+ Sbjct: 64 SERVISAIKNHEEIAICGDYDADGMTSTALLIDVLTKLNAKPI-PLIPSRQDDGYGLNKA 122 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 ++D+ A L++TVDNG+S+ +++A+SLGI VIVTDHH L A A+I+P Sbjct: 123 IIDKIVALNINLLITVDNGVSAIEELKYAKSLGIDVIVTDHHKINHQLNDAFALIHPETT 182 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 P +S+AGVGV + L + L + + DL+ +GT+AD+ L Sbjct: 183 PEKSPYRSIAGVGVTYILAEDIAKKLNKEEILNLSK----------DLLCIGTIADMSKL 232 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 + NR + +++ G++A+ + + + ++ +D+ F + PR+N+ GR+DD Sbjct: 233 EGANRYWLKHWIYKLKDSTS-LGLQAIYKNSKLNNLQIKTNDISFKIAPRINSIGRIDDP 291 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 + + LL+ + + +AN + +N+ RK++ ++ EAL + EK + D+ + + Sbjct: 292 KLILDLLIEKDQSKVDHMANRCEEINRLRKKLCLIVEKEALNILEKKDAQIDSF---ILL 348 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420 W+ GV+GI+ASRI ++ RP + G+G L+ S RS + H+ +AL + L Sbjct: 349 AQGHWNHGVIGIVASRIMNKYLRPTAILSSEGEGLLRASVRSPKNFHVTEALGKCSDL-- 406 Query: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480 + K+GGHA AAG +++ +++ + WL + ++ + + +++ E Sbjct: 407 --LEKYGGHAAAAGFTVKASNLMALEKKLNSIAETWLSQNE-VAKISPEARIDFSQINDE 463 Query: 481 VAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRL--VGERHLKVMVEPVGGGPLLDGIAFNV 537 + L+ P+G +PLF + + + R+ GE + + D I + Sbjct: 464 LLGDLKKLEPFGIGNQKPLFWTNSCEVTKYRIGYFGE----LRISLKNADISFDAIKWEF 519 Query: 538 DTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 N + + +A+ +DI+ + + + I + P Sbjct: 520 SKK--DINLPKTINIAFNIDISTKQDKDIVCLNIVDFVP 556 >UniRef50_A6G9W0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G9W0_9DELT Length = 602 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 167/580 (28%), Positives = 273/580 (47%), Gaps = 26/580 (4%) Query: 4 QIQLRRREVDETADLPAELPPLLRRLYASRGVR----SAQELERSVKGMLPWQQLSGVEK 59 + R E ++ P++ L R + + L ++ + Q++G + Sbjct: 38 RWTRSER---EERAEALDVHPIVVELMLGRDLEALEAQREFLSPRLRELSRPTQMAGYAE 94 Query: 60 AVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSP 119 AVE+L +A + R+ + GD+D DG T+T + + LG + V +R E GYG Sbjct: 95 AVELLVDAQQRKLRVGMFGDYDVDGVTTTTILTTFLECLGVEIVA-KVASR-EGGYGFGV 152 Query: 120 EVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNL 179 + +++T D G S H + + GIP +V DHH +T+P A A++NP+ Sbjct: 153 DAAKALQESRVDMVLTGDCGTSDHEALAWLEAKGIPSVVIDHHQVPETMPPATALLNPHQ 212 Query: 180 RDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 C FP K L GV FYL +R+ L + ++P+ LDLVALGTV D++P Sbjct: 213 DGCGFPFKGLCSAGVGFYLAAGVRSKLAAKS--PGSRKSLPDPRAWLDLVALGTVCDMMP 270 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQK-LAASDLGFALGPRLNAAGRLD 298 L +NRIL G+ + + RPG++ LL+ A D + + LGF LGPRLNA GRL Sbjct: 271 LVGDNRILVRHGLEVMDQ-RRRPGVRELLKRARVDPRTHIDEGHLGFGLGPRLNAPGRLG 329 Query: 299 DMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGL 358 + LL + EA L ++ N+ R++++Q + EA+ L S G+ Sbjct: 330 SAEPSLDLLRARSSAEAEALGARVEMFNERRRDMQQRIVAEAMALLAADPAS--PRRRGI 387 Query: 359 AMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERLDT 417 + W G+VGI A+ I ER+ RP + G G +GS R+ G+ +R AL Sbjct: 388 VVAREAWAPGIVGIAAAGIVERYQRPTLVIGIDPGSGEARGSARTAGGVDVRAALAECRH 447 Query: 418 LYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVS-DGPLSPAE 476 L + +FGGH AAG+S+ D ++ F E + + + DG L+ + Sbjct: 448 L----LRRFGGHKAAAGVSMPADNIDALKEAFDAACAEQMGEEADREPIDFHDGELALDD 503 Query: 477 MTMEVAQLLRDAGPWGQMFPEPL-FDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAF 535 + + + + GP+G F P +++ +++ HL + ++ G D IAF Sbjct: 504 IDLRLISHIESLGPFGVGFARPRYLCAGAEVVRIKVLKGSHLALTLK--QGKAHRDAIAF 561 Query: 536 NVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 P V L Y + N +RG+ Q+I++ +W Sbjct: 562 RKGN--LPIAKGDRVGLLYTPERNSYRGHDRAQLIVERLW 599 >UniRef50_B2J6M4 Single-stranded-DNA-specific exonuclease RecJ n=19 Tax=Cyanobacteria RepID=B2J6M4_NOSP7 Length = 816 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 159/621 (25%), Positives = 271/621 (43%), Gaps = 68/621 (10%) Query: 2 KQQIQLRRREVDETADLPAELPPL-----LRRLYASRGVRSAQELERSVK-----GMLPW 51 + I + ++ + PL +L RG++ Q+L + P+ Sbjct: 6 QWTITATEQPLEWFIQAVKQHTPLSSGIYAAQLLWQRGIKDNQQLTAFINYKDYQPASPF 65 Query: 52 QQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN--IDYLVPN 109 + ++ A+ L A+ +I + GDFDADG T+T++ + N + Y +PN Sbjct: 66 EFGQEMQLAIARLQQAYNAKEKIAIWGDFDADGITATSVLWDGLGQFFKQNTQLIYYIPN 125 Query: 110 RFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLP 169 R ++ +GL+ + +D +G +LIVT D G ++ + +A+ LGI VIVTDHH P Sbjct: 126 RLKESHGLNNQGIDNLAKQGCKLIVTCDTGSTNIEEIIYAKQLGIDVIVTDHHTLPTERP 185 Query: 170 AAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLV 229 AIINP +L+GV VA+ L+ AL L N+A L +LLDLV Sbjct: 186 PVAAIINPRYFSREHQLFNLSGVAVAYKLVEALYQSLP--------NVAKHPLEDLLDLV 237 Query: 230 ALGTVADVVPLDANNRILTWQGMSRIRA-------GKCRPGIKALLEVANRDAQKLAASD 282 A+G +AD+V L + R L G+ R++ + RPG+ LLE+ + + +D Sbjct: 238 AVGLIADLVQLSGDCRYLAQLGIQRLQEDFKQPPTARRRPGVGRLLELCQKSGDR--PTD 295 Query: 283 LGFALGPRLNAAGRL-DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEAL 341 + F LGPR+NA R+ D S V LL ++ LA + N RK +++ +Q + Sbjct: 296 ISFGLGPRINAVSRIQGDASFCVELLTSRDVKRCNELAEVTELANTRRKSLQKDVQAQV- 354 Query: 342 TLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDG------- 394 +KL + + + + +W GV+G++A ++ + RP I + G Sbjct: 355 --AQKLTQLDLSTTSVIVLEDAQWPAGVLGLVAGQVAQETGRPTILLSTELAGEEDFALT 412 Query: 395 --------TLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQ 446 +GS RS+ + + ++ L + +FGGH AAGLSL + LF Sbjct: 413 PYSLLPAPLARGSARSVNSVDLYQLVKDQAHL----LHRFGGHPFAAGLSLLVENIPLFT 468 Query: 447 QRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFR- 505 + + + L + L V +D ++ A++ E+ L+ P G P P Sbjct: 469 AAINQQLRQSLGSTTLTPTVQADLTVTVADLGKELFLELKVLEPCGMGNPVPKLLIQNCW 528 Query: 506 ------LLQQRLVGER--HLK--VMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYK 555 QQ G++ ++K + G G+ + P + Sbjct: 529 FENAWHRNQQDWQGKKVQYIKTEFDIRDDSGRSAFPGLWWGHYKDELPI---GRCDCIAE 585 Query: 556 LDINEFRGNRSLQIIIDNIWP 576 LD N F + +I + + P Sbjct: 586 LDYNTF--KKRYEIRLIAVRP 604 >UniRef50_UPI0001C38E3E exonuclease RecJ n=1 Tax=Arthrospira platensis str. Paraca RepID=UPI0001C38E3E Length = 789 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 159/609 (26%), Positives = 277/609 (45%), Gaps = 59/609 (9%) Query: 5 IQLRRRE------VDETADLPAELP-PLLRRLYASRGVRSAQELERSVK-----GMLPWQ 52 +++ + E + L +L RG+ + ++L R ++ P + Sbjct: 2 WKVQPSPNIPHWMIPEIQRHHPNISGKYLCQLLLCRGISTREQLTRFLEIDSYQPASPAE 61 Query: 53 QLSGVEKAVEILYNAFR------EGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYL 106 + +++A+ L A++ +I++ GDFDADG T+TA+ +R S++ Y Sbjct: 62 FGAEMQEAIARLTLAYQKCISHNNPEKIVIWGDFDADGITATAVLWEGLRQFFGSSVSYT 121 Query: 107 VPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGD 166 +PNR D +GL+ ++ A+G LI+T D G ++ A ++ A+ LGI VI+TDHH Sbjct: 122 IPNRLTDSHGLNQRTIETLAAQGCSLIITCDTGSTNLAELQLAQDLGIDVIITDHHTLPP 181 Query: 167 TLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL 226 T P AIINP + P L+GV +A+ L+ AL L ++ L LL Sbjct: 182 TRPPVLAIINPRNLPTDHPLYHLSGVAIAYKLIEALYMALP--------GVSQQPLENLL 233 Query: 227 DLVALGTVADVVPLDANNRILTWQGMSRIR---AGKCRPGIKALLEVANRDAQKLAASDL 283 DLVA+G +AD+V L + R L +G+ +++ RPG+ LL++ ++ + +D+ Sbjct: 234 DLVAIGLIADLVELSGDCRYLAKRGIQQLQKQLDQPTRPGVAELLKLCQKNGDR--PTDI 291 Query: 284 GFALGPRLNAAGRL-DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALT 342 F +GPR+NA R+ D+S V LL + A+ LA + N R+E+++ + A Sbjct: 292 SFGIGPRINAVSRIYGDVSCVVELLTTPDPQRAKQLAINTEIANLRRRELQKNL---AYE 348 Query: 343 LCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG---DGTLKGS 399 + EKL+R + + + P+W GV+G++A +I + + RP I G G +GS Sbjct: 349 VREKLQRIDLSTTYAIVLSDPQWSVGVLGLVAGQIAQEYSRPTILLTTEGGTETGLARGS 408 Query: 400 GRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDP 459 RSI + + D + L + FGGH AAGLSL + +F Q + + + Sbjct: 409 ARSINQIDLYDLVYNQRHL----LHNFGGHPFAAGLSLPIENIPIFTQAIDRELRQRMGG 464 Query: 460 SLL-QGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFR---------LLQQ 509 LL Q ++ D + AE+ + + L+ P G P P Sbjct: 465 ILLSQSPIIVDLVCTVAELGSHLFKELKLLEPCGMGNPVPKLLIKNCWFDNVWNENPYDL 524 Query: 510 RLVGERHLKVMVEPVGGGPL--LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSL 567 R ++++ + G+ + P +LD N R Sbjct: 525 RGKKVQYIRTTYDLFDDSTELGFPGVWWGHYKEELP---PGRYDAIVELDFNAH--KRCY 579 Query: 568 QIIIDNIWP 576 ++ + + P Sbjct: 580 EVRLLAVRP 588 >UniRef50_A3VNM8 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Alphaproteobacteria RepID=A3VNM8_9PROT Length = 610 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 180/575 (31%), Positives = 273/575 (47%), Gaps = 26/575 (4%) Query: 14 ETADLPAELPPLLRRLYASRGVRSAQELERSVKG-----MLPWQQLSGVEKAVEILYNAF 68 ET ++ PLL + A+R V + + + L G++ A L +A Sbjct: 40 ETIAQRLDIDPLLSEVVAARQV-TPDLAAAWLSPRLRDDLPDPSCLKGMDTAAARLADAI 98 Query: 69 REGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHAR 128 G I + GDFD DG TS+A+ +R++G + + +PNR +GYG + + Sbjct: 99 IAGETIGLFGDFDVDGTTSSAIMARYLRAVGAAPL-IHLPNRQSEGYGPNLPAFLAMKEK 157 Query: 129 GAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKS 188 GA LIVT+D G ++H + A G+ VIV DHHL P A A++NPN DC Sbjct: 158 GASLIVTLDCGATAHGVLAAAAEEGLEVIVVDHHLMSLPAPTAVAVVNPNRPDCLSGLTM 217 Query: 189 LAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILT 248 L+ GV F ++AL LR++G+F +R L VAL V DV+PL R LT Sbjct: 218 LSAGGVTFLTLVALNRTLRERGFFADRPPPDLLRLLDL--VALSLVCDVMPLKGLGRTLT 275 Query: 249 WQGMSRI----RAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGV 304 QG++ + AG GI+AL AA+ G+A+GPR+NAAGR+ Sbjct: 276 RQGLALLGHIEGAGSGNQGIRALA-AEAGAKGPAAAAHFGYAIGPRINAAGRIGHAMTAF 334 Query: 305 ALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPE 364 LL D+ +A LA EL LN R+ +E + EA E LP L + Sbjct: 335 DLLTTDDPVKAAALAAELSDLNGIRQGVEAAVLEEACKAAEDQGDRDAPLP--LVVAGEG 392 Query: 365 WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMML 424 WH GV+GI+A R+KERF RP + + AG+ KGSGRS+ G+ + A+ + Sbjct: 393 WHPGVIGIVAGRLKERFGRPALVISLAGE-EGKGSGRSLPGVDLGAAIGAAVEAGLLLGG 451 Query: 425 KFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQL 484 H MAAGL++ D + + E + + + DG ++P +T + Sbjct: 452 GG--HPMAAGLTVRRDGLGELRAFLDARLGEAIAAAQADRVLSLDGIVAPTGITRSLHDG 509 Query: 485 LRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNV-----D 538 L A P+G PEP F + + R++ ++H+ V + GG GIAF Sbjct: 510 LLQAAPFGNGNPEPRFALADISVRELRVLKDKHMAVTLADDTGGRA-RGIAFGCVGQPLG 568 Query: 539 TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 L + + LA ++ +E+RG + QI +++ Sbjct: 569 DLLEAGRAGQRLHLAGRIKPDEYRGGNAAQIHLED 603 >UniRef50_Q7MAI2 PUTATIVE SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE EC 3.1 n=1 Tax=Wolinella succinogenes RepID=Q7MAI2_WOLSU Length = 534 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 178/559 (31%), Positives = 282/559 (50%), Gaps = 45/559 (8%) Query: 23 PPLLRR-----LYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVV 77 PPLL + + + R A++ +K + ++L G+ +A +++ A ++ RI+V+ Sbjct: 7 PPLLGKREIESILSQR---FAKDRFCRLKDLPSPEKLHGIPQACDLIIEAMQQKRRIVVI 63 Query: 78 GDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 137 GD+D DG STA+ V L I ++PNRF DGYGLSP ++++ LI+TVD Sbjct: 64 GDYDVDGIVSTAIMVDFFHRLSYP-ITSVIPNRFCDGYGLSPALIERL---ETDLIITVD 119 Query: 138 NGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFY 197 NGI +H + + GI +I+TDHH P LP A+ IINP L C+FP K + G VA+Y Sbjct: 120 NGIMAHEAAKICQERGISLIITDHHTPPLELPCAKVIINPKLSCCSFPQKEICGASVAWY 179 Query: 198 LMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRA 257 L AL+ L + ++ E LDL+AL +ADV+PL NR+L QG+ + Sbjct: 180 LCAALKGRLEAKI----------DMGEFLDLLALAIIADVMPLVEVNRLLVRQGLKEMAR 229 Query: 258 GKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARV 317 R L E + D+ F + P LN+AGR++D S+ + LL D+I EA Sbjct: 230 S-NRAAFVVLKE--KLRKSHFSGEDVAFLIAPLLNSAGRMEDASLSLEFLLSDSILEAGE 286 Query: 318 LANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRI 377 + L ALN RKE E + EAL D L Y +WH+GV+GI+ASR+ Sbjct: 287 KFDRLCALNCLRKETESRLFEEALGQI-------DLCGEALLAYGEDWHEGVLGIVASRL 339 Query: 378 KERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSL 437 +R+ +P +G+LKGS RS+ L + L++ L +L++GGH AAG+ L Sbjct: 340 TDRYKKPAFILTQ-KEGSLKGSARSVGELDLVRLLQKSHHL----LLRYGGHKGAAGIQL 394 Query: 438 EEDKFKLFQQRFGELVTEWLDPSLLQGE-VVSDGPLSPAEMTMEVAQLLRDAGPWGQMFP 496 + F+ F+Q E ++ + + E G ++ + E+ +L P+G+ P Sbjct: 395 RRENFESFKQAIEEELSRLKERIEWRCEGEECLGEIALESVDAELLDILERFEPYGEGNP 454 Query: 497 EPL-FDGHFRLLQQRLVG--ERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLA 553 +P F R+ + ++VG + H ++++ G IAF P + Sbjct: 455 KPRFFCKEARVCRYKIVGAEKNHTSLVLKNPSGNER-KAIAFRQVYEFAPLAS---ISCL 510 Query: 554 YKLDINEFRGNRSLQIIID 572 + L + F Q+II+ Sbjct: 511 FSLSRDIFSAESIPQLIIE 529 >UniRef50_Q1IXZ0 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IXZ0_DEIGD Length = 702 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 172/577 (29%), Positives = 267/577 (46%), Gaps = 54/577 (9%) Query: 4 QIQLRRREVDETADLPA---ELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA 60 + L + P L ++ +RG+ + L+ ++ +A Sbjct: 12 RWLLAPPASRAALLESMRLWGVAPPLAQVLHARGL-TPAHLDAPLRLTPNPAL----REA 66 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 + A R G RI + GD+DADG ++TA +L +R +G + + +P+R +GYGL P+ Sbjct: 67 ARRIVGAIRAGRRIRIHGDYDADGVSATATLILGLREVG-AEVHGFIPHRLNEGYGLHPD 125 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 V++ A L+VTVD G+++ V + G+ VIVTDHH PG P +++P+ Sbjct: 126 RVEEHAAA-CDLLVTVDCGVTNLEEVRALLARGLDVIVTDHHAPGPDYPDCL-VVHPHRT 183 Query: 181 -DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVP 239 + +L G GVA++L+ A+ L +P EL L LGT+ADV P Sbjct: 184 TGYDPELHNLTGAGVAYHLLWAVHEEL-----------GLPAPLELAGLATLGTIADVAP 232 Query: 240 LDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDD 299 L NR L G+ + A PG++ALL + + + D+ F L P +NAAGRL + Sbjct: 233 LIGENRALVRAGLDAL-ATSTLPGVRALLNAKRVE--RPSVRDVAFLLAPLVNAAGRLGE 289 Query: 300 MSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLA 359 + + LL + EAR LA L++ NQ R+ ++ M EAL L D + Sbjct: 290 ADLALQLLTTTSDHEARTLATYLESRNQERRVLQDRMYEEALGLA-------DPEEPAIV 342 Query: 360 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLY 419 + P+WH GV+GI+AS++ E FH+PV A KGS RS G+ + L L Sbjct: 343 VTKPDWHAGVMGIVASKLVETFHKPVYIVAQ-----GKGSVRSTPGISAVEGLRYSHDL- 396 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 + ++GGH AAG +L+E F+ + R V ++ P D PL T Sbjct: 397 ---LKRYGGHPGAAGFALDEANFEALRDRLHTYVRQFPRP---VPMWRLDAPLPTRAATP 450 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT 539 E+ + P+G P PL+ L RLVG+R + + G L GI Sbjct: 451 ELVRQAAAFEPYGTGHPPPLWHMREVLSSTRLVGKRGDSLQFQIGG----LRGIQHGERD 506 Query: 540 ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576 A+ + LA L E+RG L++ + P Sbjct: 507 AVPGER-----DLATHLVRGEWRGQTRLELHGQALRP 538 >UniRef50_B8H563 Single-stranded-DNA-specific exonuclease recJ n=8 Tax=Caulobacteraceae RepID=B8H563_CAUCN Length = 606 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 177/582 (30%), Positives = 278/582 (47%), Gaps = 20/582 (3%) Query: 3 QQIQLRRREVD--ETADLPAELPPLLRRLYASRGVR---SAQELERSVKGML-PWQQLSG 56 + + R ++ L L + SRGV + L ++K + + Sbjct: 24 RAWRERPADLAVVREIQQRHGLIEPLAKALVSRGVTLEHAEHYLRPTLKALFPDPSLFTD 83 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++A EIL +A G +V D+D DGATS A V R +G + +P+R +GYG Sbjct: 84 MDRAAEILIDALERGRPTMVFADYDVDGATSAAQLVRWFRHMGVE-LPIYIPDRLTEGYG 142 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIIN 176 SP + GA+L+VT+D G +++ + A +G+ V+V DHHL + PAA A++N Sbjct: 143 PSPAAFRKIRDGGAELVVTLDCGAAAYDAIASAGEIGLEVVVIDHHLMREDPPAAAAVVN 202 Query: 177 PNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVAD 236 PN C LA GV F L+ AL R +G F E P+ + LDLVALG V D Sbjct: 203 PNRPGCPSGQGVLAAAGVTFVLLTALNREARKRGLFTED-RPQPDPRQWLDLVALGEVCD 261 Query: 237 VVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGR 296 V L NR LT G+ + A PG+KAL EV + + GF LGPR+NA GR Sbjct: 262 VTQLVGFNRALTALGLRAMGA-WANPGLKALFEVGKGSGEP-SVFTAGFILGPRINAGGR 319 Query: 297 LDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPG 356 + +G LL D+ EAR LA ELD+LN RK +E + EA + E+ Sbjct: 320 VGRSDLGARLLSTDDPLEARALAEELDSLNTERKAVEAAVVEEAAAMLERGSNFN-PDAP 378 Query: 357 GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPA-GDGTLKGSGRSIQGLHMRDALERL 415 + + +WH GV+GI+A R++ER+ +PV+ KGSGRS G+++ A++ Sbjct: 379 VIVVAGDDWHPGVIGIVAGRLRERYRKPVVVIGIDRAANVGKGSGRSQSGVNLGRAIQ-- 436 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 G+++ GGHAMAAGLS+ + F+ E + ++ ++ V D + P Sbjct: 437 AAFEAGLLMAGGGHAMAAGLSIRPEMIPEFRAFLEERLAGEMEAVGVEA-VEVDALVQPR 495 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 + + P+G PEPLF R + + H+++ + G + I+ Sbjct: 496 AANRALLDDFQRLAPFGPGNPEPLFALSQVRPERVSALKGGHVRMDLVGPTGDR-IKAIS 554 Query: 535 FNVDTA---LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDN 573 + G + + KL +++ G +Q+ I++ Sbjct: 555 WRSAETPLGQRLLAGGGPLDVVGKLKPDDYMGRNGVQLEIED 596 >UniRef50_Q30NS6 Exonuclease RecJ n=3 Tax=Epsilonproteobacteria RepID=Q30NS6_SULDN Length = 537 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 157/552 (28%), Positives = 271/552 (49%), Gaps = 41/552 (7%) Query: 28 RLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATS 87 L + R +S ++ + + L KA + + +A RE +I +VGD+D DG ++ Sbjct: 23 ELLSQR-FQSQEK---KLSHIPDPSLLHDAPKAAKKIADAIRENKKITLVGDYDVDGVSA 78 Query: 88 TALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVE 147 TA+ V R + ++ ++PNRF DGYG+SP ++++ LI+TVDNGI++ E Sbjct: 79 TAIMVDFFRQIPYP-LEAVIPNRFSDGYGVSPHLLERI---DTDLIITVDNGITALEAAE 134 Query: 148 HARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLR 207 GI +I+TDHH P TLP A AIINP L C++P + + G VA+ Sbjct: 135 ICAQRGIELIITDHHTPLTTLPHAYAIINPKLSACSYPFQEICGAQVAW----------L 184 Query: 208 DQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKAL 267 + ++ LD++ + +AD++PL NR L G+ + + + Sbjct: 185 LLALLKKELNLNIDMRSFLDILCIAIIADIMPLTDINRPLVKDGLKVLMSSNRA---SCV 241 Query: 268 LEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQ 327 + + + +++ D+ F + PR+N+AGRL+D S+ + L + +A + L++LN+ Sbjct: 242 IIRDFLNKKNISSEDIAFQIAPRINSAGRLEDASIALEFLTAQTLNKAYMQFEILNSLNE 301 Query: 328 TRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIA 387 +R+E+E EAL++ + + + EWH+GVVGI+A+R+ E + RP I Sbjct: 302 SRRELEAEATKEALSIA-------NGNDKVIVVAKEEWHEGVVGIVAARVAEHYTRPTIV 354 Query: 388 FAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQ 447 +G KGS RS+ +++ +E + KFGGH MAAGL+L E F+ Sbjct: 355 LTL-ENGVAKGSARSVGNVNIHKLIEENS----HFLRKFGGHKMAAGLTLNEKDIDAFRV 409 Query: 448 RFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRL 506 E ++ L G + ++ +E+ LL P+G+ PLF + Sbjct: 410 AINESASK-LSLDDFLSLDEVIGVVPSNQIDLELLALLESFEPYGEANKRPLFLIRDASI 468 Query: 507 LQQRLVGER--HLKVMVEPVG-GGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRG 563 L+ + G+ H KV + +L+ I F + + ++ +Y++ NEF Sbjct: 469 LEVKTFGKDSSHSKVKIMQSNEESSILELIQFK---KILNLSTADKLTCSYRVVKNEFNS 525 Query: 564 NRSLQIIIDNIW 575 S Q+IID I+ Sbjct: 526 KISAQLIIDKIY 537 >UniRef50_B5W1F3 Single-stranded-DNA-specific exonuclease RecJ (Fragment) n=1 Tax=Arthrospira maxima CS-328 RepID=B5W1F3_SPIMA Length = 737 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 158/609 (25%), Positives = 280/609 (45%), Gaps = 57/609 (9%) Query: 3 QQIQLRRREVDETADLPAELPP-----LLRRLYASRGVRSAQELERSVK-----GMLPWQ 52 Q+Q R+ D P L +L SRG+ + ++L R ++ P + Sbjct: 2 WQVQPSRKIPDWMIAEIRRHHPNISGKYLSQLLLSRGISTPEKLTRFLEIDSYQPASPAE 61 Query: 53 QLSGVEKAVEILYNAFREG------TRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYL 106 + +++A+ L A++ +I++ GDFD DG T+TA+ +R S++ Y Sbjct: 62 FGAEMQQAIARLTLAYQRCISHNNPEKIVIWGDFDPDGITATAVLWEGLRQFFGSSVSYT 121 Query: 107 VPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGD 166 +PNR D +GL+ ++ A+G LI+T D G ++ A ++ A++LGI VI+TDHH Sbjct: 122 IPNRLTDSHGLNQPGIETLAAQGCSLIITCDTGSTNLAELQLAQNLGIDVIITDHHTLPP 181 Query: 167 TLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELL 226 T P AIINP + P L+GV +A+ L+ AL L ++ L LL Sbjct: 182 TRPPVVAIINPRNLPSDHPLYHLSGVAIAYKLVEALYMALP--------GVSQQPLENLL 233 Query: 227 DLVALGTVADVVPLDANNRILTWQGMSRI---RAGKCRPGIKALLEVANRDAQKLAASDL 283 DLVA+G +AD+V + + R L +G+ ++ + RPG+ LL++ + + +D+ Sbjct: 234 DLVAIGLIADLVEITGDCRYLAKRGIQQLQKQQKNPTRPGVSQLLKLCKNNGDR--PTDI 291 Query: 284 GFALGPRLNAAGRL-DDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALT 342 F +GPR+NA R+ D+S V LL + +A LA + N R+E+++ + A Sbjct: 292 SFGIGPRINAVSRIYGDVSCVVELLTTRDTQQAYKLAWNTEIANSRRRELQKNL---AYD 348 Query: 343 LCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG---DGTLKGS 399 + +KL++ + + + P+W+ G++G++A +I + + RP I G G +GS Sbjct: 349 VRKKLQKIDLSTTYAIVLSDPQWYVGLLGLVAGQIAQEYRRPTILLTTEGGTETGLARGS 408 Query: 400 GRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDP 459 SI + + D + L + FGGH AA LSL + +F+Q + + + + Sbjct: 409 ASSIHPIDLYDLVYSQRHL----LHSFGGHPFAASLSLPIENIPIFKQVIDQQLRQRMGG 464 Query: 460 SLL-QGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFR---------LLQQ 509 LL Q ++ D + AE+ + Q L+ P G P P ++ Sbjct: 465 ILLPQSPIIVDLVCTVAELGYNLFQELKLLEPCGIGNPVPKLLIKNCWFENVWNKNIVDL 524 Query: 510 RLVGERHLKVMVEPVGGGPL--LDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRSL 567 R +++K + G+ + P +LD N Sbjct: 525 RRKQVKYIKTTYQLFDDSTESGFPGVWWGHYKEELP---PGRYDAIVELDFNT--NRSKC 579 Query: 568 QIIIDNIWP 576 ++ + + P Sbjct: 580 EVRLLAVCP 588 >UniRef50_B5YFK1 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Dictyoglomus RepID=B5YFK1_DICT6 Length = 824 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 151/595 (25%), Positives = 275/595 (46%), Gaps = 41/595 (6%) Query: 1 MKQQIQL--RRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKG----MLPWQQ- 53 M++ I L + +E + PLL RL +RG++ + + +R + + Sbjct: 1 MRRWILLFEENKGQEEVFAKEIGVSPLLARLLLNRGIKDSLQAKRFLNPKIEDLYDPFLY 60 Query: 54 LSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFED 113 +EKA+ L ++++ GD+D DG T+T + + + G ++ + +P+R E+ Sbjct: 61 FPDLEKAMNFLVKLRDSKRKVLIFGDYDVDGITATTIMYRVLSNWGW-DVSFYIPHRLEE 119 Query: 114 GYGLSPEVVDQAHARG--AQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGD-TLPA 170 GYGL + + +A ++ L++TVD GI S +E+ R G+ VIVTDHH+P + +P Sbjct: 120 GYGLKEKSIKKALSQNEFVSLLITVDCGIKSRKEIEYLRKNGVEVIVTDHHIPEEGNIPE 179 Query: 171 AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVA 230 A + NP L N+P +AGVGVAF + AL F+ + ++ +L+LV Sbjct: 180 ALLVFNPYL--NNYPYPYMAGVGVAFKFLKALGDFIGKDIYEEKG---------ILELVT 228 Query: 231 LGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKL-AASDLGFALGP 289 LGT+ D++ L NRIL G+ + GIK L+ D + D+ F + P Sbjct: 229 LGTLGDLMELKDENRILVKFGLEKFL-NPDLVGIKTLIRKVGLDKNTIINTKDVIFNITP 287 Query: 290 RLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLER 349 R+N+ GR ++ + LLL DN+ EA +L +LD N+ R+E + + A + + E Sbjct: 288 RINSIGRFKEVEEAIRLLLTDNVEEAEILCEKLDEFNRKRREEVERVYEIAKEMLREEEI 347 Query: 350 SRDTLPGGLAMYHPEWHQ---GVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGL 406 + + +Y+P W + GV+GI+AS + E ++ P GD + SGR ++ + Sbjct: 348 ENN---KAVFLYNPLWGRDVGGVMGIVASMLVEEYNVPFFLGRKEGDFVV-FSGRGVEDV 403 Query: 407 HMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEV 466 ++ D + L + ++ FGGH A G SL E +++F+ +L E +V Sbjct: 404 NLFDFISNLSS----YLVNFGGHRGAVGFSLFEKDYEIFKINAIKLANELWKDVDFTPKV 459 Query: 467 VSDGPLSPAEMTME----VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVE 522 D +S ++ E L P+G EP F ++ + ++ Sbjct: 460 KIDAEISLDKIKSENIGKFLSELDLLPPFGPGNEEPRFKISSTVIAYFEKMGNGGRYKIK 519 Query: 523 PVG-GGPLLDGIAFNVD-TALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 G +L F++ + + + +++ ++G ++ Sbjct: 520 IGDISGKVLSTPIFSIGIEEDAFKESPQTLDIILRIEKEGYQGREYFNFYLEEWR 574 >UniRef50_D0GIS6 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GIS6_9FUSO Length = 568 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 144/581 (24%), Positives = 270/581 (46%), Gaps = 29/581 (4%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVK----GMLPWQQLSG 56 M +++ R+ L+ RL +RG+ S +E+E+ + +L + Sbjct: 1 MNWEMKNYDRDYLAFKSGEFGESELITRLLLNRGISSKEEVEKFLNSSENDLLSPFLIEN 60 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 +++ E + A + ++I+ GD+D DG ++ A V+ R LG N+DY +PNR +G G Sbjct: 61 MDEVTERILKAKKNREKVIIYGDYDVDGISAAAYLVIVFRKLGM-NVDYYIPNRAHEGVG 119 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEA-II 175 ++ ++ R A L +TVD I S+ V + I +I+TDHH + + I Sbjct: 120 INSNLIKYLIKRNAGLFITVDTNIGSYEEVMMLKRNNIDIIITDHHRQTEEIKNFNIPTI 179 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP + N+P+K+L+G GVAF L A+ +++ + L + LD+V +GTVA Sbjct: 180 NPKI-GNNYPNKNLSGSGVAFKLADAV---------YEKCGVNKKILYDYLDIVMIGTVA 229 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 DVVP+ NR + +G+ +R K + G+K +L + + SD+GF + P NA G Sbjct: 230 DVVPMTDENRFIIKKGLYNLRKTKIK-GMKYILNYLRINPNNITTSDVGFYIAPIFNALG 288 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+D+ + V + ++ + + E+ N+ R+ +E + + + R P Sbjct: 289 RIDNSKMVVEFFIEEDDFKLFSIIEEMKKANKIRRYLEIE-----IYNEIEEKIQRLNKP 343 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 + M +WH GV+G++ SRI +++ PVI + +G K S RSI+GL++ D L+ Sbjct: 344 KYIFMKSRKWHSGVIGVVCSRISIKYNIPVILVSI-KNGYGKASCRSIEGLNIFDMLKET 402 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 + +FGGH +AAG + E K + + + + S ++ + D L+ Sbjct: 403 SDKFE----RFGGHDLAAGFLVSEKYLKEIEIYLKKRLVTA-NKSNIEKVLYIDSVLNIE 457 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIA 534 ++ + P+G EP F + + G + ++ I Sbjct: 458 QINKSKVLDINRLSPFGLDNQEPNFVDKGIKFISFTKFGVNNRHFKGFIKKNDRIISVIG 517 Query: 535 FNVDTALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 +N+ L N ++ ++ Y R + +++ + + Sbjct: 518 YNLGHKLKFKNINKKYEIVYTPSFKSVRTDLFIELKLKDFR 558 >UniRef50_A1U815 Phosphoesterase, RecJ domain protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U815_MARAV Length = 660 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 214/619 (34%), Positives = 303/619 (48%), Gaps = 78/619 (12%) Query: 29 LYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATST 88 ++A+RG + K ++ L+ KA L +A EG II V DFD DGAT Sbjct: 40 IFANRGASYPETYHP--KHLVSPTLLTDALKAAVRLSDALLEGQTIICVADFDCDGATGA 97 Query: 89 ALSVLAMRSL---------GCSNIDYLVPNRFEDGYGLSPEVVD-QAHARGAQLIVTVDN 138 A+ M+ +++ ++P+RF GYGL P + + + +IVT+DN Sbjct: 98 AIFNRCMKRFADTLAAFRMPKASLHTVIPDRFRYGYGLKPRLAEDKIKPLYPDVIVTIDN 157 Query: 139 GISSHAGVEH---------ARSLGI-PVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKS 188 GISSH V A G VI+TDHH G+TLP A A++NPN +DC FPSK+ Sbjct: 158 GISSHDAVTRISQWQGVSSANPNGAPDVIITDHHAQGETLPTAFAVVNPNRKDCPFPSKA 217 Query: 189 LAGVGVAFYLMLALRTFL------RDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDA 242 LAG GVAFY+ML +R L + IA + DLVA+GT+ D+VP+D Sbjct: 218 LAGCGVAFYMMLLVRQTLISRLKRNSRTSAAAGGIAAVQINHFADLVAVGTIGDMVPMDL 277 Query: 243 NNRILTWQGMSRIRAGKCRP------------GIKALLEVANRDAQKLAASDLGFALGPR 290 NNRI+ G+ RI G P G++ALLE AN + ASD+ F + PR Sbjct: 278 NNRIMVKVGLDRINKGLQMPARKAHLDGYLSFGVRALLEAANVS-YPVTASDIAFQVVPR 336 Query: 291 LNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS 350 +NA GRL+ + G+ LL + A + A+ LN+ RK +++ MQ EA L + Sbjct: 337 INAVGRLETPTAGIECLLSETQMMAGIEADRCHKLNEERKSVQRTMQQEADEALASLSDT 396 Query: 351 RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD--------------GTL 396 DT + +++P WH G+VG++AS IKER VI FAP GD L Sbjct: 397 PDTETPCVVLHNPSWHPGIVGLVASGIKERTKGAVICFAPEGDPNAKPGTPEADGDPDWL 456 Query: 397 KGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEW 456 KGSGRS +H+RD L + P +M++FGGHA AAGLSL + + F++ F + V Sbjct: 457 KGSGRS-DNVHLRDTLAFVAAQAPDLMMQFGGHARAAGLSLHKTELNRFKRLFAKAVEHS 515 Query: 457 LDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERH 516 L + L V +DG L A + PWG +FPEP F +F++++ VG H Sbjct: 516 LTAAPLVNPVYADGALPAHLRDHAFAAWIER-QPWGNLFPEPTFTQNFKVIRAAGVGTAH 574 Query: 517 LKVMVEPVG-------------------GGPLLDGIAFNVDTALWPD--NGVREVQLAYK 555 K++V G + + F PD V++ Y Sbjct: 575 QKLLVMDADEQPLSNTDQNGTTIYPVSHGAKAIPMLWFFSRDEENPDTVAPGSAVRVTYT 634 Query: 556 LDINEFRGNRSLQIIIDNI 574 L IN FRG +Q I +I Sbjct: 635 LTINRFRGQNEIQAIAKSI 653 >UniRef50_C3WCG5 Single-stranded-DNA-specific exonuclease recJ n=16 Tax=Fusobacterium RepID=C3WCG5_FUSMR Length = 573 Score = 476 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 142/584 (24%), Positives = 275/584 (47%), Gaps = 32/584 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSA----QELERSVKGMLPWQQLSG 56 M+ + + + +T + LL L +RG + + + + Sbjct: 2 MQWEYSSLPQSLIDTKAIQWNKDKLLTTLLLNRGFSDEKSVNEFINPEISDFRNPFKFEK 61 Query: 57 VEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYG 116 + V+ + + +I + GD+D DG T+ V +G ++DY +PNR E+GYG Sbjct: 62 MASVVDKILAKKEKNEKIFIYGDYDVDGITAAVFLVKVFSEIGI-DVDYYIPNRMEEGYG 120 Query: 117 LSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPG-DTLPAAEAII 175 L + +D R +L++TVD G++S V++A SLGI VIVTDHH D ++ Sbjct: 121 LDKKAIDFMKKRNCKLVITVDTGVNSIEDVKYAESLGIEVIVTDHHKSTKDKEDEELLLL 180 Query: 176 NPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVA 235 NP L D + K L+G GVA + + L + L + +D+V +GTVA Sbjct: 181 NPKLSD-TYEFKYLSGAGVALKVAQGVYEKLNAD---------MGKLYQYMDIVMIGTVA 230 Query: 236 DVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAG 295 DVVP+ NRI+ +G+ + K + G+ LL+ +++ +D+ + + P +N+ G Sbjct: 231 DVVPMVDENRIIIKEGLKILSKTKVK-GLMYLLKYLKFQNKEINTTDVSYFISPLINSLG 289 Query: 296 RLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLP 355 R+ +G L ++ E + E+ N+ R+E+E+ + EA +K+++ Sbjct: 290 RIGVSKMGADFFLKNDEFEIYNIIEEMKKSNKKRRELEKAIYEEADHKIKKMDKKSLKCA 349 Query: 356 GGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERL 415 +Y +WH GV+G+++SR+ +++ P+ A D K S RS++G+ + + + Sbjct: 350 ---FLYSKKWHPGVIGVVSSRLSVKYNMPIALVAL-RDNIGKASCRSVKGVSVFNIFHTM 405 Query: 416 DTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPA 475 +++FGGH +A+G ++++ K ++ F E + E + + + D L Sbjct: 406 KDK----LVRFGGHDLASGFIVKQENLKEVERIFKENIDE-IKVEQEEKILKIDMELPIE 460 Query: 476 EMTMEVAQLLRDAGPWGQMFPEPLFDGH---FRLLQQRLVGERHLKVMVEPVGGGPLLDG 532 ++ + + + P+G PLF F +++ V ERH +++ G Sbjct: 461 KIDENLFKAMESLAPFGLDNNHPLFIDKDLSFDYIKKFGVNERHFNGIIK--KNGKNYHM 518 Query: 533 IAFNVDTALWPD-NGVREVQLAYKLDINEFRGNRSLQIIIDNIW 575 +AF++ + +++ + Y + ++G +QI I +I Sbjct: 519 VAFDMGHKINELEAKIQKFDIVYYPEKVIYKGEEIIQIRIKDIK 562 >UniRef50_B9ZQ66 Phosphoesterase RecJ domain protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ66_9GAMM Length = 624 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 155/602 (25%), Positives = 258/602 (42%), Gaps = 35/602 (5%) Query: 1 MKQQIQLRRREVDETADLPAELPPLLRRLYASR-----------GVRSAQELERSVKGML 49 MK+ ++ + A L P + A R G + + + Sbjct: 24 MKRWQEIEGHPDSVARAVEAGLTPFQAEIVAKRMPEADTDTIRKGFVDVR-----LANLD 78 Query: 50 PWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAM-RSLGCS--NIDYL 106 L G+E A E L +A I + D D DG TS A+ + +G + + Sbjct: 79 SPDTLPGIEAATERLVSAVLLEQVIAIETDHDVDGVTSHAILYRTLVHVMGHAPEKVQSY 138 Query: 107 VPNRFEDGYGLSPEVVDQA--HARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLP 164 + +R ++GYGLS VVD+ QL+VT DNG + + G+ IVTDHH Sbjct: 139 IGHRLKEGYGLSDAVVDRILAADEKPQLVVTADNGTADEDRIARLAGEGVDTIVTDHHAV 198 Query: 165 GDTLPA--AEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNL 222 + P A A ++P D +P ++AG VA+ L + + + D+ L Sbjct: 199 PEAGPPRSAVACVSPARDDSAYPDTTIAGCMVAWLLAMRVYRQWCEVQGLDDPGPGRAAL 258 Query: 223 AELLDLVALGTVADVVPLDA--NNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAA 280 ++L VALGT+AD V L NNR + +G+ RI A RP + + Sbjct: 259 IDMLPEVALGTIADCVSLGESVNNRTIVRKGLDRINADDPRPCWRVAKRHTCQHGAPFTE 318 Query: 281 SDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEA 340 L F +GPR+NA GRLD+ GV LL + GEA + LDA N R+ +E+ M+ A Sbjct: 319 ERLAFDVGPRINARGRLDEAMAGVKFLLSKDEGEAEQWWSVLDAENTQRRAVEKAMKDVA 378 Query: 341 LTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGD--GTLKG 398 + E G+ ++ H GV GI+ASR+ ER+ RP + +P + + G Sbjct: 379 IGKAEAQVSKG---VSGIMVWMENGHSGVHGIVASRVLERYGRPTLCVSPVHESGDRVTG 435 Query: 399 SGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLD 458 S R ++G+H+ AL ++ ++KFGGHA A G++LE ++ + E Sbjct: 436 SARGVEGVHVERALRQVKADLGNRVMKFGGHAGAGGITLERSALDALEESWNAACNEQAQ 495 Query: 459 PS--LLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERH 516 +L+ + + + L P+G+ F P++ + + +G+ Sbjct: 496 AHGLVLEPLLQVEA-WPEGGFDDRRVRELEALAPFGERFRRPVYALKALIQTVKAMGQEK 554 Query: 517 LKVMVEPVGGGPLLDGIAFNVDT--ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574 + + G + FN + V +A + +N + G+ LQ+++ + Sbjct: 555 THLRLALKTDGGTYGAVYFNAAEPGGETQWRSGQSVWVAASVGLNHYMGHCRLQLVVREM 614 Query: 575 WP 576 P Sbjct: 615 RP 616 >UniRef50_A6DSV4 Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DSV4_9BACT Length = 572 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 163/566 (28%), Positives = 270/566 (47%), Gaps = 31/566 (5%) Query: 5 IQLRRREVDETADL--PAELPPLLRRLYASRGV--RSAQELERSVKGMLPWQQLSGVEKA 60 + E ++ +D+ +L + A+R + ++A S+ + + ++K Sbjct: 10 WYPKEVENEDLSDIQGRFQLSLPAATVLANRSLLKKNADCFNASLASLSDPFRFPDMQKT 69 Query: 61 VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120 VE ++ + ++ +IIV GD+D DG TS+ L ++S G ++ + NR DGYG +P Sbjct: 70 VERIFESIQKNEKIIVHGDYDTDGVTSSTLLNWVIKSYG-ADSSVFISNRLHDGYGPTPT 128 Query: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180 + GA L+++ D GI+S ++A G+ I+TDHH P D LP A AIINP + Sbjct: 129 TMQNQIEAGASLVISTDCGITSFEAADYAHENGLDFIITDHHNPADQLPKAYAIINPRIT 188 Query: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240 SLAGVGV+F L AL F G A +L LDLVALGT+AD PL Sbjct: 189 TELIDLYSLAGVGVSFKLCHALLKFGSKIG-----KKATIDLRNGLDLVALGTIADSCPL 243 Query: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300 NR L G+ + RPG++AL E D + A+D+ + P++NAAGR+ D Sbjct: 244 IGENRALVKNGLKLLNVNP-RPGVRALYEATTLDT-HITAADISRKISPKINAAGRVGDP 301 Query: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360 V LL ++I E+R L +L N+ R+ E+ +EAL + ++ +S P L + Sbjct: 302 MVSAKLLASNSIHESRQLVGQLKNFNRIRRNAEKSAYMEALQIAKEQAKSS---PPLLLV 358 Query: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGD-GTLKGSGRSIQGLHMRDALERLDTLY 419 P+WH GV+G++++++ + F P + + + L GSGRS G+++ + L+ L Sbjct: 359 VGPDWHPGVIGLISTKLTKHFGLPSVVLSKDKNPDELLGSGRSCDGINLLEGLKHCSDL- 417 Query: 420 PGMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVV--SDGPLSPAEM 477 + FGGH MAAGLSL + + F+++ EL+ + + + DG S ++ Sbjct: 418 ---LNNFGGHPMAAGLSLAVNNLEAFREKIIELLESDVLDKVEKKRKHQYYDGEFSFQDL 474 Query: 478 TMEVAQLLRDAGPWGQMFPEPLFD-GHFRLLQQRLVGERH-LKVMVEPVGGGPLLDGIAF 535 + L P+G P+F + ++ H + ++ IAF Sbjct: 475 NEQFIGDLERMEPFGNGNDAPVFLFKNVQIRDT-----HHPISAVLSGFVMDKFGTKIAF 529 Query: 536 NVDTALW--PDNGVREVQLAYKLDIN 559 T + + N Sbjct: 530 TYYTPFDYSEFEPGKLYSIIATPYRN 555 >UniRef50_B9L7S0 Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Nautiliaceae RepID=B9L7S0_NAUPA Length = 520 Score = 473 bits (1217), Expect = e-132, Method: Composition-based stats. Identities = 168/563 (29%), Positives = 283/563 (50%), Gaps = 64/563 (11%) Query: 26 LRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGA 85 +R + ++R +EL + + LS ++KA + + NA + +I+VVGD+D DG Sbjct: 7 IREILSNR----IEELSS--SNLPHFLLLSDIKKASKRVVNAIKNKEKIVVVGDYDVDGV 60 Query: 86 TSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAG 145 +S+A+ L + +I+ ++P+RF+DGYGL+P ++++ A LI+TVDNGI+S Sbjct: 61 SSSAIMKLFFEKI-KFDIEVVIPDRFKDGYGLTPGLLERI---EADLIITVDNGITSFEA 116 Query: 146 VEHARSLGIPVIVTDHHLP--------------GDTLPAAEAIINPNLRDCNFPSKSLAG 191 E + + +I+TDHH P LP A AIINP +FP K + G Sbjct: 117 AEICKQKRVDLIITDHHTPLIMDKVKCNMENEERFKLPDAYAIINPKTSP-DFPFKEICG 175 Query: 192 VGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQG 251 VA+YL A+++ ++ + +L E D++A+ +ADV+PL NR L G Sbjct: 176 AEVAWYLCAAIKSEMKLKI----------DLREFTDILAIAIIADVMPLTHMNRTLVNMG 225 Query: 252 MSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN 311 + R+ +P KAL N + A D+ F + PRLNAAGR+ V L+ N Sbjct: 226 LKRLNKA-VKPFSKALKRFFN---KDFKAEDIAFQIAPRLNAAGRMFHAGVAYEFLISKN 281 Query: 312 IGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVG 371 +A L ELD LN RKE E+ EA+ E++ + ++H+GVVG Sbjct: 282 EQKAFDLLMELDGLNNLRKETEK----EAVESIEEITDD-------FIIVKGDFHEGVVG 330 Query: 372 ILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAM 431 I+ASR+ ++ +P I F +G LKGSGRS+ + + + L G FGGH M Sbjct: 331 IIASRLVHKYKKPAIVFC-ENNGILKGSGRSLGNIDIFSLVNECKELLEG----FGGHKM 385 Query: 432 AAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPW 491 A GLSL+E+ F+ ++ +++ E G L E+ +E+ +L++ P+ Sbjct: 386 ACGLSLKEENFEELKKVLNNKISK-YSKDDFFIEDYVLGELPFKEIDIELLDILQEFEPF 444 Query: 492 GQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQ 551 G+ P+P F + ++ + + E H K+++ +L + F + + Sbjct: 445 GEGNPKPKFIANAKIEHVQNLKENHFKLIL--SQDDIVLPAVIFRFEGEFKDSLYFK--- 499 Query: 552 LAYKLDINEFRGNRSLQIIIDNI 574 + ++ N + G S+Q++I+ I Sbjct: 500 --FSINENSYYGR-SVQLMIEEI 519 >UniRef50_B7JRF0 Single-stranded-DNA-specific exonuclease RecJ n=4 Tax=Bacillaceae RepID=B7JRF0_BACC0 Length = 559 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 141/557 (25%), Positives = 253/557 (45%), Gaps = 46/557 (8%) Query: 8 RRREVDETADLPAELPPLLRRLYASRGVRSAQELERSV----KGMLPWQQLSGVEKAVEI 63 +E T + P+ G + +ER + + L ++KAV Sbjct: 24 PNKEALLTMAKHLNIHPIFLYHLHLHGYEQFETIERFLVPNWEHCHSPFLLQDMKKAVYR 83 Query: 64 LYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVD 123 ++ A + I++ GD+DADG TS+ L ++ L +N+ +P R +GYGLS +V++ Sbjct: 84 IFKAIQNKENIMIFGDYDADGITSSTLLYKGLKKLN-ANVTVRLPIR-SEGYGLSAKVMN 141 Query: 124 QAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCN 183 + + LI+TVDNG S+H ++ A+ G+ VIVTDHH P A INP D Sbjct: 142 ELPS-NISLIITVDNGSSAHEAMQVAKQKGVDVIVTDHHDILQGYPDCYAFINPKRNDDT 200 Query: 184 FPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDAN 243 +P LAG GVA ++ AL ++ +EL++L +GT+AD++PL Sbjct: 201 YPFPFLAGAGVALKVVQALFETIKQPFL--------KYCSELIELATIGTIADLMPLKDE 252 Query: 244 NRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVG 303 NRI+ G+ ++ + P +K L ++ + + +S +GF +GP NA GR+ D ++ Sbjct: 253 NRIICSYGLKQMNSNPS-PALKTLFKLLKI--KTVDSSTIGFQIGPLFNATGRIADPNIT 309 Query: 304 VALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHP 363 +L + +A+ EL +N RK++ + + A + + +D + ++ Sbjct: 310 GEMLRNNETDQAK--WTELLCINNQRKQMTKEQFLIAEETIFQDQLHKD---NVIVVWG- 363 Query: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQ--GLHMRDALERLDTLYPG 421 ++H G++G+++SRI E++ +P I + G GS RS+ + ++ Sbjct: 364 DFHPGIIGLISSRISEKYKKPSIVISNTG----TGSARSVNKTDFSIVKVIQDCRD---- 415 Query: 422 MMLKFGGHAMAAGLSLE--EDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTM 479 + K+GGH AAGLS+ E LF+ E + L L + + Sbjct: 416 YLKKYGGHRAAAGLSIPMKEQHLLLFRSAIQEAAKTQ---TCLIPPTYYLSKLPIDKFSE 472 Query: 480 EVAQLLRDAGPWGQMFPEPLFDGHF-RLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVD 538 ++ + L P+G P+P+F + +++GE HL + + + F Sbjct: 473 QLFRDLYTLEPFGMENPKPIFLSQNTKPSFVKMLGEDHL---LLGISSRCVF---GFQKG 526 Query: 539 TALWPDNGVREVQLAYK 555 R + Y Sbjct: 527 DLYEQIKKARSMDFLYT 543 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.161 0.480 Lambda K H 0.267 0.0494 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,013,416,174 Number of Sequences: 3077464 Number of extensions: 196936169 Number of successful extensions: 612365 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1019 Number of HSP's successfully gapped in prelim test: 206 Number of HSP's that attempted gapping in prelim test: 602981 Number of HSP's gapped (non-prelim): 1587 length of query: 577 length of database: 1,040,396,356 effective HSP length: 134 effective length of query: 443 effective length of database: 628,016,180 effective search space: 278211167740 effective search space used: 278211167740 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 97 (41.7 bits)