BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (458 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B6ICG8 TraH protein n=2 Tax=Enterobacteriaceae RepID=B6... 509 e-143 UniRef50_A4WGU0 TraH family protein n=2 Tax=Enterobacteriaceae R... 485 e-135 UniRef50_A7ZGS3 TraH protein n=4 Tax=Enterobacteriaceae RepID=A7... 441 e-122 UniRef50_A8QYR4 TraH protein n=2 Tax=Legionellaceae RepID=A8QYR4... 271 3e-71 UniRef50_Q5ZTT1 TraH n=1 Tax=Legionella pneumophila subsp. pneum... 266 1e-69 UniRef50_D1RMN0 TraH pilus assembly protein n=2 Tax=Legionella R... 266 2e-69 UniRef50_A9L6A2 TraH family protein n=12 Tax=Gammaproteobacteria... 251 3e-65 UniRef50_D0Z585 IncF plasmid conjugative transfer pilus assembly... 247 5e-64 UniRef50_A3VN11 TraH n=1 Tax=Parvularcula bermudensis HTCC2503 R... 247 6e-64 UniRef50_A5VGS4 TraH family protein n=5 Tax=cellular organisms R... 226 1e-57 UniRef50_A5KZG8 Putative uncharacterized protein n=1 Tax=Vibrion... 223 1e-56 UniRef50_C5SIL6 TraH family protein n=1 Tax=Asticcacaulis excent... 219 2e-55 UniRef50_Q3IUV3 TraH n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID... 217 9e-55 UniRef50_Q1N8Y9 Pilus assembly protein n=1 Tax=Sphingomonas sp. ... 216 2e-54 UniRef50_Q2NDI0 Pilus assembly protein n=6 Tax=Sphingomonadales ... 205 4e-51 UniRef50_C9NPT8 IncF plasmid conjugative transfer pilus assembly... 202 2e-50 UniRef50_Q6MB86 Putative F pilus assembly protein traH n=1 Tax=C... 194 5e-48 UniRef50_Q0F376 Putative uncharacterized protein n=1 Tax=Maripro... 187 8e-46 UniRef50_D2U4N5 Conjugal transfer pilus assembly protein n=1 Tax... 155 2e-36 UniRef50_A1W643 TraH family protein n=5 Tax=Betaproteobacteria R... 153 1e-35 UniRef50_A0B4P9 TraH family protein n=5 Tax=Proteobacteria RepID... 149 3e-34 UniRef50_UPI00016AD114 TraH family protein n=1 Tax=Burkholderia ... 149 3e-34 UniRef50_B4EQN3 Putative TraH conjugative transfer protein n=1 T... 147 9e-34 UniRef50_A1RH72 TraH family protein n=16 Tax=Gammaproteobacteria... 147 1e-33 UniRef50_C4NV64 TraH n=17 Tax=Gammaproteobacteria RepID=C4NV64_E... 145 3e-33 UniRef50_Q1RJF7 F pilus assembly protein TraH n=31 Tax=Rickettsi... 135 2e-30 UniRef50_D0SGX6 TraH family protein n=1 Tax=Acinetobacter johnso... 125 4e-27 UniRef50_Q1MY31 TraH n=1 Tax=Bermanella marisrubri RepID=Q1MY31_... 124 5e-27 UniRef50_Q8L263 Pilus biogenesis protein n=2 Tax=Enterobacteriac... 112 3e-23 UniRef50_B4RLQ8 TraH n=13 Tax=Neisseria RepID=B4RLQ8_NEIG2 109 2e-22 UniRef50_B7XGS6 Putative pilus assembly protein n=2 Tax=Pseudomo... 108 3e-22 UniRef50_A4JTN5 TraH family protein n=1 Tax=Burkholderia vietnam... 98 8e-19 UniRef50_C4Z010 Putative uncharacterized protein n=1 Tax=Rickett... 97 1e-18 UniRef50_D2U124 Conjugative transfer pilus assembly protein TraH... 96 3e-18 UniRef50_Q19ND6 Pilus assembly protein n=8 Tax=Enterobacteriacea... 91 6e-17 UniRef50_Q5NX61 Sex pilus assembly protein n=1 Tax=Aromatoleum a... 91 1e-16 UniRef50_A7H3H2 Putative TraG n=1 Tax=Campylobacter jejuni subsp... 91 1e-16 UniRef50_Q74BB6 Conserved domain protein n=3 Tax=Desulfuromonada... 90 2e-16 UniRef50_A9AU08 TraH family protein n=1 Tax=Burkholderia multivo... 87 1e-15 UniRef50_Q2LU06 Pilus assembly protein n=1 Tax=Syntrophus acidit... 86 3e-15 UniRef50_B7J815 Pilus assembly protein TraH, putative n=1 Tax=Ac... 85 7e-15 UniRef50_A2SNL1 Sex pilus assembly protein n=1 Tax=Methylibium p... 84 1e-14 UniRef50_A0R7T1 Putative uncharacterized protein n=1 Tax=Pelobac... 82 3e-14 UniRef50_Q4HPA7 Putative uncharacterized protein n=1 Tax=Campylo... 78 9e-13 UniRef50_C1SHD2 Conjugative relaxosome accessory transposon prot... 77 1e-12 UniRef50_Q1NGS0 Putative uncharacterized protein n=1 Tax=Sphingo... 74 2e-11 UniRef50_C4S402 Pilus assembly protein n=2 Tax=Yersinia RepID=C4... 71 7e-11 UniRef50_C5F065 Pilus assembly protein n=2 Tax=Helicobacter pull... 64 9e-09 UniRef50_A0L355 Putative uncharacterized protein n=1 Tax=Shewane... 49 3e-04 UniRef50_Q893U0 Flagellar cap protein fliD n=1 Tax=Clostridium t... 42 0.033 >UniRef50_B6ICG8 TraH protein n=2 Tax=Enterobacteriaceae RepID=B6ICG8_ECOSE Length = 468 Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust. Identities = 239/446 (53%), Positives = 328/446 (73%), Gaps = 4/446 (0%) Query: 8 LLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQ 67 L L AA+L + A ADVN+D+N+FFNKLGF N T+ VWQGQAAGYA GG+L+ R Q Sbjct: 14 LSCLVAAVLAL--PAQADVNNDLNKFFNKLGFEGNATRAAVWQGQAAGYATGGNLFLRNQ 71 Query: 68 VKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTV 127 V N+Q+ S T P I AGCGGIDAYLGSFSFIN EQ++RFVKQ+M NA GYFFDLALQT V Sbjct: 72 VNNLQIASFTPPHITAGCGGIDAYLGSFSFINSEQIERFVKQLMGNAVGYFFDLALQTAV 131 Query: 128 PEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADW 187 P +K+ KDF+QK+AS++N+MN+SSCQAAQGIIGGL+P+ V QK+CQDIAGE+N+F+DW Sbjct: 132 PGMKSVKDFMQKLASELNNMNISSCQAAQGIIGGLWPKNTVQSQKICQDIAGETNMFSDW 191 Query: 188 AASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTG 247 AASRQGCTVGG+ + V DKA + K++V +N N+MW L KN M +GN EL E VM +TG Sbjct: 192 AASRQGCTVGGQMNKVLDKAPENMKDQVMRNKNLMWEILKKNDMMNGNTELMELVMNVTG 251 Query: 248 SLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTISRDNAL 307 +L+F GEI + + + +IRA+M GG A I C + CLK T VT+S++N+L Sbjct: 252 TLIFDDKGEIQFIGPQANHQGLIRALMYGGQATIFGCTSTGDCLKTRNRT-VTVSQNNSL 310 Query: 308 KSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLTDYI 367 ++ ++ +I +K VSD PL +EKGFI ST++P+ +YLVDPQML +S + L+DYI Sbjct: 311 NQRVQNMIKNISDKLVSDDPLTSQEKGFIESTSVPILRYLVDPQMLNIS-TFYPSLSDYI 369 Query: 368 GYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQDALLV 427 YDILLQY+ EL+ QAR + N+ E + + +N ++A+RQ+ Q+QV V+ + L+ Sbjct: 370 AYDILLQYLNELLSQARVQAGSKNFPEEQMKMLRENFSEASRQLEGLQAQVDVKANTLME 429 Query: 428 VDRQMSYMRQQLSARMLSRYQNNYHF 453 ++++M Y+RQQ+S +++SRY+ N ++ Sbjct: 430 LEQRMGYLRQQVSTQLMSRYEQNLNY 455 >UniRef50_A4WGU0 TraH family protein n=2 Tax=Enterobacteriaceae RepID=A4WGU0_ENT38 Length = 454 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 245/453 (54%), Positives = 331/453 (73%), Gaps = 5/453 (1%) Query: 5 IKPLLVLCAALLTVTPA--ASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSL 62 +K L+ + +T A A ADVN D+N FF LG++ N +Q WQGQAAGY GGS+ Sbjct: 2 VKSLITAASIFMTGMAALPAQADVNGDLNGFFGSLGYSGNVSQAQAWQGQAAGYYSGGSV 61 Query: 63 YARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLA 122 Y R VKNVQLISM LP +NAGCGGIDAYLGSFS I+GE++QRFVKQIMSNAAGY FDLA Sbjct: 62 YLRNPVKNVQLISMQLPSLNAGCGGIDAYLGSFSMISGEEIQRFVKQIMSNAAGYAFDLA 121 Query: 123 LQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESN 182 LQT VPE+K AKDFLQK+ASD+NSMN+SSCQAAQGIIGGL+P TQVSQQK+CQDIAGE+N Sbjct: 122 LQTMVPELKQAKDFLQKLASDVNSMNMSSCQAAQGIIGGLWPVTQVSQQKICQDIAGETN 181 Query: 183 IFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFV 242 +F+DWA+SRQGCTVGG+S+ V DKA D K++V KN N++W+ LSKN + ++ LKE V Sbjct: 182 MFSDWASSRQGCTVGGQSNKVTDKAGDDQKDQVLKNKNLIWDTLSKNGLLGNDRALKELV 241 Query: 243 MTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCL-KVVADTPVTI 301 M+ GS++F NG++T L+ +R +I+ +M GGTAK+ C+++ CL VV D +TI Sbjct: 242 MSTVGSIIFNNNGDVTILTPLVDNRDLIKVLMRGGTAKVYGCDEATLCLGPVVKD--LTI 299 Query: 302 SRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIY 361 S NAL + + L+ S+QNK V DT L ++EKGF+++T++PV KYL + Q +G+S + + Sbjct: 300 SESNALVTLVKNLMLSMQNKLVDDTALSNQEKGFVNTTSVPVLKYLTNAQSMGMSATYLL 359 Query: 362 QLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQ 421 Q+ D+I D+++QY+QEL++QA +A N+ E + DN+ A +A + Q Sbjct: 360 QVADFIAQDLMIQYLQELVKQASLSLAGKNFPEEAAAKLRDNIIHAQGLLADMKLQSAAD 419 Query: 422 QDALLVVDRQMSYMRQQLSARMLSRYQNNYHFG 454 Q+AL +DR M Y++QQ+S + YQ+NYH+G Sbjct: 420 QNALDGIDRNMQYLQQQVSTIVSGSYQSNYHWG 452 >UniRef50_A7ZGS3 TraH protein n=4 Tax=Enterobacteriaceae RepID=A7ZGS3_ECO24 Length = 501 Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/445 (49%), Positives = 317/445 (71%), Gaps = 5/445 (1%) Query: 9 LVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV 68 L++ AL T +ASA + DMN FFN + +ASN T WQGQAA Y GGS YART Sbjct: 58 LLIGTALCT---SASAGLQDDMNSFFNNMSYASNATSAKAWQGQAARYVTGGSFYARTGN 114 Query: 69 KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVP 128 KN+QLIS++LP INAGCGGID YLGSFSFIN +Q+ FVKQ M+NAAGYFFDLAL+TTVP Sbjct: 115 KNIQLISISLPSINAGCGGIDVYLGSFSFINSDQIMAFVKQTMANAAGYFFDLALETTVP 174 Query: 129 EIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWA 188 E+K AKDFLQKMA+D+N N+SSCQAA+ ++ + SQQ VCQ +AG++N+F+DW Sbjct: 175 ELKAAKDFLQKMAADLNRFNMSSCQAAKAMVDSVASLWGESQQNVCQSVAGQNNVFSDWV 234 Query: 189 ASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTGS 248 +SRQGCT GGK +SV +KA+ +K++V K+IN+MW+ALS N N EL++F M+++GS Sbjct: 235 SSRQGCTSGGKYESVTNKATGAEKDQVLKDINLMWDALS-NSTLSSNAELRQFAMSISGS 293 Query: 249 LVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTISRDNALK 308 ++FG NGE+ LS+ +DRS++ AMM GG+AK+ C++ +KCL + VTIS +L Sbjct: 294 VIFGSNGEMRILSSLASDRSLLSAMMSGGSAKVYVCDNQNKCLSPSLNN-VTISESKSLI 352 Query: 309 SQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLTDYIG 368 + L SI+NKA++DTPL ++EK FI+ST+IP+ ++VD L VS S+ QLTDYI Sbjct: 353 RMVRDTLTSIENKAITDTPLTEREKQFINSTSIPILSWIVDQSSLSVSQSLFAQLTDYIA 412 Query: 369 YDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVV 428 DI LQY++ +++ +AT +Y A + + + + DA + + + + +VQ++++AL+ Sbjct: 413 VDIYLQYLEAVMKVVNGSLATKDYPGANMNELKNGLADARQALNSLRMEVQIKENALISA 472 Query: 429 DRQMSYMRQQLSARMLSRYQNNYHF 453 +Q+ ++RQQ+S++M R NY F Sbjct: 473 QQQIRFIRQQVSSKMSDRVLGNYQF 497 >UniRef50_A8QYR4 TraH protein n=2 Tax=Legionellaceae RepID=A8QYR4_9GAMM Length = 454 Score = 271 bits (694), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 148/451 (32%), Positives = 260/451 (57%), Gaps = 17/451 (3%) Query: 6 KPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYAR 65 K L LC L A+V++D++ FFN +G+ASN T P ++ QAAG+ GGSLYAR Sbjct: 3 KVFLTLC--LFGFFSTVEANVSTDLDNFFNGMGYASNVTSPAAFESQAAGFFGGGSLYAR 60 Query: 66 TQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQT 125 QV+ QL+ + LP AGCGGID + GS SF++ ++L K +M+NA Y D+ L + Sbjct: 61 NQVRQYQLVQLDLPSYRAGCGGIDLFTGSMSFLSEQKLVDLGKSVMTNAGVYAVDVMLAS 120 Query: 126 TVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIA--GESNI 183 TVPE+K +D+LQ++ N +++SCQ +Q ++GG++P+T SQQK+C+D A G+ + Sbjct: 121 TVPELKQVRDYLQQLEQMANQASINSCQLSQNMVGGIWPKTAESQQKICKDQAAMGKEGL 180 Query: 184 FADWAASRQGCTVGGKSDSVRDKASDKD--KERVTKNINIMWNALSKNRMFDGNKELKEF 241 F+D+ +R C+ G D+V +KAS + K++V N N++W+ L + ++EL E Sbjct: 181 FSDYVKARMACS-GNGFDNVMNKASQDETRKKQVVLNKNLVWSLLQSKSFLNSDRELAEM 239 Query: 242 VMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGG----TAKISHCND---SDKCLKVV 294 VM+LTG+L+ G++T + + ++ +I A++ G TAKI C D ++C++ V Sbjct: 240 VMSLTGTLIIDKEGKVTNVPSLASNADLINALVGTGNGVRTAKIWRCKDVTAGNQCMQ-V 298 Query: 295 ADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYL--VDPQM 352 + +TI+ ++ L S++ +++ +I K D +E F+S T++PV K+L ++ Sbjct: 299 SLQDITIAENSTLTSKVREIIRTINTKLAKDEKPTSREINFLSMTSLPVMKFLSVLNSTQ 358 Query: 353 LGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIA 412 + I + I +D+L Y+ EL+ + A + ++ I ++ AT ++ Sbjct: 359 YSSAAVDIEEYATLIAHDLLTHYLTELLAEVSNATAGSELNSDLVNDIQKRIHTATSKVT 418 Query: 413 AFQSQVQVQQDALLVVDRQMSYMRQQLSARM 443 A +V + L + M+ + +Q+++ M Sbjct: 419 ALDPKVGRKLKEKLSLIEHMARIEKQVASTM 449 >UniRef50_Q5ZTT1 TraH n=1 Tax=Legionella pneumophila subsp. pneumophila str. Philadelphia 1 RepID=Q5ZTT1_LEGPH Length = 461 Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 144/420 (34%), Positives = 230/420 (54%), Gaps = 11/420 (2%) Query: 5 IKPLLVLCAAL--LTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSL 62 +K +L+ C + L + S + D+ +F L +N T+P +Q Q AG+ GG+L Sbjct: 1 MKKILLSCGLIGALGIGQVYSKSIGEDLTGYFKALNMGANVTEPHAYQAQRAGFYTGGNL 60 Query: 63 YARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLA 122 YAR+ V+N+Q++ ++ P ++AGCGGIDA LG FS I G++ F K I++N+ G F LA Sbjct: 61 YARSSVRNLQIMRLSWPKVSAGCGGIDATLGGFSHIKGKEFVDFTKNILNNSQGLAFQLA 120 Query: 123 LQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESN 182 L+ P + LQ +A+ +N N+SSC A+ + GL PRT+++QQ CQ I N Sbjct: 121 LEQATPLLGNVATKLQNVATWVNQTNISSCATAESAVLGLAPRTRIAQQHACQSIGQSKN 180 Query: 183 IFADWAASRQGCTVGGKS-DSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEF 241 +F+DWA +RQGC G + D R + E+V N N+ WNAL KN +F + EL + Sbjct: 181 LFSDWAEARQGCGKGSSNYDYDRVINENSSNEQVVDNTNVAWNALKKNGLFADDIELAQL 240 Query: 242 VMTLTGSLVFGPNGE---ITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTP 298 +MTL+G+L+ + E + LS+ ++ ++I A++ GG KI C++ KCL+ T Sbjct: 241 MMTLSGTLILTRDAEGVHVQRLSSLVSNNNLISALLRGGEVKIYQCDEKVKCLQPTL-TS 299 Query: 299 VTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNS 358 I + L+S++ L+ + +K + + KG I ST PV K +V QM + +S Sbjct: 300 KNIDISHGLESKVRDLILDMASKIKDNVEQSEAAKGLIESTQYPVMK-MVSVQMAFMKDS 358 Query: 359 MIYQLTDY---IGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQ 415 + T Y I DIL QY+ E +Q + Y EA++ ++ A R + + Sbjct: 359 AVIDTTRYSEAIAIDILFQYLNENLQLVKQAAGALQYPEAIMKEFQTDLTQARRDLVQME 418 >UniRef50_D1RMN0 TraH pilus assembly protein n=2 Tax=Legionella RepID=D1RMN0_LEGLO Length = 466 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 149/443 (33%), Positives = 250/443 (56%), Gaps = 16/443 (3%) Query: 10 VLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVK 69 + A LL + A+ SD++ FFN LGF +N T +Q QAAGYA GS+YAR QV+ Sbjct: 15 TVAALLLLGSSQLFANAESDLSHFFNNLGFDANVTGSHAYQTQAAGYAALGSVYARNQVR 74 Query: 70 NVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPE 129 ++L + +P + +GCGGID + G FSFI +Q+ +F++ I+S AGY +LAL+T +PE Sbjct: 75 TIRLAHVDVPGMRSGCGGIDLFAGGFSFIKSDQIVKFMQNILSGGAGYALNLALETELPE 134 Query: 130 IKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWAA 189 I A F+QK+A++IN N +SC+ + + ++PR + +QQ++C+D+ F DWA Sbjct: 135 IAHAMQFMQKLANEINGTNFNSCEMGENLSAAVWPRNRAAQQRLCEDLGRHQGTFTDWAM 194 Query: 190 SRQGCTVGGKSDSVRDKASDKD--KERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTG 247 +RQ C+ GG +DS+ +A + K+RV N NI+W++L N+ + +L E M+++G Sbjct: 195 ARQKCSTGGDADSILSQAKNNPEYKDRVLINTNIVWDSLQINQFIAQDPKLAEVYMSISG 254 Query: 248 SLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDS---DKCLKVVADTPVTISRD 304 ++VF G + + T++ I+A++ GG HC D+ CL + A + IS Sbjct: 255 TIVFNAKGALMTYPSLATNQDFIKALLYGGKLPSYHCTDTGPQSHCLSIDATSTQEISAK 314 Query: 305 NALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLV--DPQMLGVSNSMIYQ 362 AL +Q+ +LL I + L DK+KG I T VF + Q G+ S Y+ Sbjct: 315 KALVAQVQELLLGIYDNIKMGKELSDKQKGLIELTQPAVFNLISANAQQNTGIQGS--YE 372 Query: 363 LTDYIGYDILLQYIQ---ELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQ 419 L + D+L QY+ ++I+ + + G ++E + N+ A + +A F ++ + Sbjct: 373 LAQSVATDLLAQYLSNSLDIIRGSLSGKELGAHNEE---RLYKNLQLAQQFVARFSTESR 429 Query: 420 VQQDALLVVDRQM-SYMRQQLSA 441 + +A L + + + ++Q LSA Sbjct: 430 ERFNAALQTNELIRNNVKQALSA 452 >UniRef50_A9L6A2 TraH family protein n=12 Tax=Gammaproteobacteria RepID=A9L6A2_SHEB9 Length = 462 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 149/459 (32%), Positives = 254/459 (55%), Gaps = 16/459 (3%) Query: 6 KPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYAR 65 + LL + + L T A SA V+ +N FFN LG+ +N T PG ++GQ+A Y GG+L+ R Sbjct: 8 RTLLGVTISCLLTTHAHSAGVSGSLNDFFNGLGYGTNVTNPGSFKGQSANYYSGGNLFVR 67 Query: 66 TQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQT 125 + +++ QL+S+ +P I AGCGGID ++G FS IN + L + K I++NAA + DLALQT Sbjct: 68 SPIRDAQLVSVQMPSIAAGCGGIDMFMGGFSHINSDALVQQGKAIIANAAPFAVDLALQT 127 Query: 126 TVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQK-VCQDIAGESNIF 184 P+IK KD L +A + +++SC++AQ + L V QK +C + ++N F Sbjct: 128 WAPQIKQIKDTLTAIADKYLNQSINSCESAQAGVSALAGFAGVGSQKYICATMGTQNNAF 187 Query: 185 ADWAASRQGCTVGGKSDSVRDKASDKD---KERVTKNINIMWNALSKNRMFDGNKELKEF 241 ADW + +Q C GG++++ D A KD K+ V KN NI+W A+ KN + L EF Sbjct: 188 ADWVSGQQECGAGGQANNQLDNAK-KDPALKDMVRKNTNIVWAAILKNTFLASDPTLAEF 246 Query: 242 VMTLTGSLVFGPNGEITPLSARTTD-RSIIRAMMEGGTAKISHCNDS--DKCLKVVADTP 298 +M+++G+ ++ G + TD ++I +++EGG A+ C + D+CL T Sbjct: 247 LMSISGTYIYDATGNARGYGSLLTDNNNLINSLLEGGKAETYQCTNKAIDQCLAPTQQT- 305 Query: 299 VTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNS 358 +TI ++ L+ ++ LL I +K +D PL D +K + TT+P+ +L G++ Sbjct: 306 ITIQSNHGLQYRVDTLLRGIASKMQNDQPLTDNDKSLLEYTTLPIMTFLRTELEAGLT-P 364 Query: 359 MIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQV 418 I + Y+Q ++ ++ + N D I I ++ +A R + ++ Sbjct: 365 QTNTYAKIISVQFITLYLQNMLSIVKSSITATNNDPKDIDRIERDIINANRFLEGLTAKA 424 Query: 419 Q---VQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFG 454 Q V Q L++ ++Q ++QQ++ M ++ + N +FG Sbjct: 425 QNEAVSQHQLIMQNQQ---IKQQITGAMSAKAKANLNFG 460 >UniRef50_D0Z585 IncF plasmid conjugative transfer pilus assembly protein TraH n=2 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z585_LISDA Length = 457 Score = 247 bits (631), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 150/384 (39%), Positives = 224/384 (58%), Gaps = 10/384 (2%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +K L +L +L+ P A V+SD+ FF+ L F N T P +QGQAA Y GGS Y Sbjct: 1 MKKLAILIPLMLS-NPTV-AGVDSDLGSFFDGLTFEGNATLPQSYQGQAANYYTGGSAYI 58 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 RT VK +QL ++T+P+INAGCGGID + G FSFIN +QL K I+SNA + DLALQ Sbjct: 59 RTPVKQMQLATITVPEINAGCGGIDLFAGGFSFINSDQLVSMGKAIVSNAVPFAVDLALQ 118 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQK-VCQDIAGESNI 183 T P++K KD L+ +A +IN+++++SC+AAQ I L V ++ +C + ++N Sbjct: 119 TWAPQLKNVKDRLEAIAREINALSVNSCEAAQAGISALAGFAGVGEKNYICATMGTQNNS 178 Query: 184 FADWAASRQGCTVGGKSD-SVRDKASD-KDKERVTKNINIMWNALSKNRMFDGNKELKEF 241 FADWAA++ GC ++ V++ +D K K+ V N NI+W +L KN G+++L EF Sbjct: 179 FADWAAAKNGCNNEASANQQVKNATNDPKLKDFVAANRNIIWYSLHKNGFLSGDRQLAEF 238 Query: 242 VMTLTGSLVFGPNGEITPL-SARTTDRSIIRAMMEGGTAKISHCNDS--DKCLKVVADTP 298 M+L+G++V+ T S T+ ++I M +GG A C+ S + CLK T Sbjct: 239 FMSLSGTIVYDDKMSATRYPSLLTSSNNLIEVMTQGGEASYYRCDTSGQNGCLKPTQAT- 297 Query: 299 VTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVS-N 357 +TI++D ALK ++ LL SI K SD L + E F+ S ++PV K + G S Sbjct: 298 LTINQDKALKHRVAVLLRSIITKYRSDQGLSNNETQFLDSVSLPVLKMMTVSLESGYSLE 357 Query: 358 SMIYQLTDYIGYDILLQYIQELIQ 381 S I I D++ Y+Q+ ++ Sbjct: 358 SSINAYAQVISTDLVTAYLQDALK 381 >UniRef50_A3VN11 TraH n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN11_9PROT Length = 472 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 146/455 (32%), Positives = 251/455 (55%), Gaps = 23/455 (5%) Query: 16 LTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLIS 75 L++ +A+ADVN++MNQF+N LG A+N T P ++GQ AGY G++Y RT +++ ++ Sbjct: 18 LSMPTSAAADVNAEMNQFWNDLGVAANVTGPSSFEGQRAGYYTFGNVYVRTPQRSLSPVN 77 Query: 76 MTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKD 135 + +P AGCGGID Y G FS++N +L F+K + +NAA + F +AL+T P I Sbjct: 78 IQMPGYRAGCGGIDIYGGGFSYVNSAELVAFMKSVANNAASFAFQVALETISPVIAEKVG 137 Query: 136 FLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASRQGCT 195 LQ +A IN M ++SC++ Q + ++P++ + + +C+ A ++ DW A+R GC Sbjct: 138 ELQSVAQRINQMAINSCESGQLAVAAVWPQSDQASRVICEASASRRGLYPDWVAARHGCG 197 Query: 196 VGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTGS--LVFGP 253 G+ +V AS ++K + +NINI W+AL K+ + G++EL +F+MTL+G+ L G Sbjct: 198 SEGERSNVLAGASVEEKASIPQNINIAWDALKKHPVISGDRELMQFLMTLSGTEILTAGA 257 Query: 254 NGEITP----LSARTTDRSIIRAMMEGGTAKISHC--NDSDKCLKVVADTPVTISRDNAL 307 + + L ++ D +I A ++GGT I C + D CL VTI+ + L Sbjct: 258 DDDAAQSYQFLPSKMLDPGVISAFLDGGTIDIYECETDPDDLCLAPTTGGSVTIASSDGL 317 Query: 308 KSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYL-VDPQMLGV-SNSMIYQLTD 365 +++++++LA I K + T L E+ F++ T++PV+K + V GV ++ I + Sbjct: 318 RARVSQMLADIMGKVRTRTALTADEQAFLNVTSLPVYKMINVHAAYEGVFADQTIQSYAE 377 Query: 366 YIGYDILLQYIQ---ELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQ 422 I D+L + E++ +A + +G D V TRQ F Q Q++ Sbjct: 378 IIAIDLLYGLFEGYAEMLSEAGSTATSGARDSVVAWK-----EQLTRQ-REFLLQYQLEN 431 Query: 423 DALLVVDRQM----SYMRQQLSARMLSRYQNNYHF 453 +A + V Q+ + +QL+ R+ + Y F Sbjct: 432 NARVEVIEQVIARTQAIERQLAGRLSKDLADAYQF 466 >UniRef50_A5VGS4 TraH family protein n=5 Tax=cellular organisms RepID=A5VGS4_SPHWW Length = 487 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 127/352 (36%), Positives = 198/352 (56%), Gaps = 19/352 (5%) Query: 10 VLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVK 69 +L A+ + A ADV MN FFN G A+N T P +QGQ+AGY G+++ R K Sbjct: 22 ILAASHFALVGVAHADVAGQMNSFFNDAGGAANVTGPSAFQGQSAGYYSMGNVWTRFPQK 81 Query: 70 NVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPE 129 +V ++ LP AGCGGID + GSFSFIN ++ +K +NA G+ F LA+ + PE Sbjct: 82 SVSPFNLQLPSARAGCGGIDLFSGSFSFINASEIVAMLKATANNALGFAFKLAIDSVSPE 141 Query: 130 IKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWAA 189 I D + A +N MN+SSC+ AQ ++GG++P+ ++ +C+ I IF+DWAA Sbjct: 142 IGKVMDEFSQKAQLLNQMNISSCETAQALVGGIWPQMDTTRSTICEAIGNSQGIFSDWAA 201 Query: 190 SRQGCTVGGKSDSV---RDKASDKDKERVTKNINIMWNALSKNRMFDG-NKELKEFVMTL 245 SRQGC G + D+ AS KD + V + N W AL K F ++ EF+MTL Sbjct: 202 SRQGCNNGNQRDNTIAGNSDASMKD-QLVGEPHNYTWEALKKAGKFGAFDQSFSEFIMTL 260 Query: 246 TGSLVFGPN------GEITPLSARTTDRSIIRAMMEGGT----AKISHCNDSDKCLKVVA 295 G+++ P+ G++ + + +++ A+++G K+ CND + C +V Sbjct: 261 VGTVITKPSDDPSVGGKVVMIG--PAEDAVVTALLDGTADAPPVKLLKCND-ENCYEVGE 317 Query: 296 DTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYL 347 T +++ +AL+ +I L+ S+ +K SDTPLD EK ++ T+P+FK L Sbjct: 318 QT-LSVPASSALRPRIEALIQSMNDKIRSDTPLDAAEKQLLNIATVPIFKIL 368 >UniRef50_A5KZG8 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZG8_9GAMM Length = 453 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 125/430 (29%), Positives = 230/430 (53%), Gaps = 8/430 (1%) Query: 30 MNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGID 89 M+ F++ F N T P +QGQ+A Y GSL+ART +KN+QL ++T+P ++ GCGGID Sbjct: 26 MDSFWDDSSFNHNLTNPSAYQGQSATYYNAGSLFARTNIKNIQLAAITMPSVSVGCGGID 85 Query: 90 AYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNL 149 A++G FS IN +QL F K +++NA + DLALQT P IK +D LQ +A + ++ Sbjct: 86 AFMGGFSHINSDQLVSFGKAVIANAVPFAVDLALQTWAPSIKENRDKLQDIADQFLTTSM 145 Query: 150 SSCQAAQGIIGGLFPRTQ-VSQQKVCQDIAGESNIFADWAASRQGC-TVGGKSDSVRDKA 207 +SCQ AQ I GL T +++ C + +SN FADW ++ C +V ++ Sbjct: 146 NSCQVAQSAIDGLAAFTDGEAKRHACATLGTQSNAFADWLEAQHECRSVRTNQSTLAGNT 205 Query: 208 SDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTGSLVFGPNGEITPLSARTT-D 266 D V ++N++W+AL K+ N+E+ EF+++LTG++++ G + + A + Sbjct: 206 DDATAHAVKVSLNVVWDALMKSAYLQDNQEVAEFILSLTGTVIYDAQGTPSYIPAMLVGN 265 Query: 267 RSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDT 326 + I A++ GG ++ C++++ CL ++ + +++S A +++ + ++ SD Sbjct: 266 DTAINALLTGGDLEVYRCDNTETCLS-MSLSAISLSESQAFNAKVRHTVDTLYAHLQSDQ 324 Query: 327 PLDDKEKGFISSTTIPVFKYLVDPQMLGVS-NSMIYQLTDYIGYDILLQYIQELIQQA-R 384 P+ + EK F+ + IP+ L+D L + S +Y I D+L Y+ ++ + Sbjct: 325 PITESEKSFVELSDIPILAMLIDDAHLNLQPESHLY--AQNIAADLLHAYLNNMLMIVNQ 382 Query: 385 AMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARML 444 +M + + + + +N A + + + + + +A L + ++ R+ LS Sbjct: 383 SMTNLASVNPTDVNRTLEGINRARDYLQTLRDRHKTKLNAYLALTERLKRKRKLLSQSAS 442 Query: 445 SRYQNNYHFG 454 +N FG Sbjct: 443 DATLSNLTFG 452 >UniRef50_C5SIL6 TraH family protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIL6_9CAUL Length = 461 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 142/446 (31%), Positives = 245/446 (54%), Gaps = 19/446 (4%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 M +K + LL TPA +ADV+ M+ F++ A+N + P V+QGQAAGY G Sbjct: 1 MKAHLKAGACIVLTLLAATPA-TADVDGAMDDFWSDSMTATNGSGPSVYQGQAAGYYTLG 59 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 + R N Q+ S+ +P + +GCGGID Y GSFSFIN +Q+ +K I NA G F Sbjct: 60 NYSYRAPQMNTQIASVGVPSVKSGCGGIDIYGGSFSFINSDQIVATMKAIAQNALGLLFQ 119 Query: 121 LALQTTVPEIKT-AKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAG 179 +A+ + + + KD +KM D+N +N++SC+AAQ ++ G R Q +Q K C ++ Sbjct: 120 MAVDSLSELLGSNIKDAFKKM-QDLNGVNINSCEAAQNLVAGTVNRIQAAQAKSCTEVGT 178 Query: 180 ESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELK 239 S +F+DWA +++ C VGG++++ A+ K N N+ W A+ K+ +F + EL Sbjct: 179 TSGLFSDWAKAKEQCGVGGQAEATAATAAADQKP---VNRNVAWEAIQKHPLFRDDTELA 235 Query: 240 EFVMTLTGSLVFGPNGEITPLSARTTDRS---IIRAMMEGGTAKISHCNDSDKCLKVVA- 295 +MTLTG++V G NG +T + D + +I ++GGT ++ C +++ C +V Sbjct: 236 LTMMTLTGTVVIGSNGGVTSIDVIPGDANKDGMITKFLDGGTYRVHQCANTE-CTQVTKY 294 Query: 296 DTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQML-- 353 VT+ + +LK +++ +L SI NK S T L + EK F+ ++PV+K + Q+ Sbjct: 295 SRDVTLDVNRSLKRRVSAMLVSIVNKIRSRTALSEDEKSFLGLVSLPVYK-MASVQVAYQ 353 Query: 354 -GVSNSMIYQLTDYIGYDILLQYI-QELIQQARAMVATGNYDEAVIGHINDNMNDATRQI 411 G + + + +D I D++L ++ Q + + A DE ++ +N+ +++ Sbjct: 354 GGFAAIEMERYSDVIALDLVLTWMSQNMAEMTAASQNLVGVDEKLLVDWQENVQSVRQEL 413 Query: 412 AAFQSQVQVQQDALLVVDRQMSYMRQ 437 FQ Q V QD ++ ++ ++ R+ Sbjct: 414 --FQRQALV-QDRIVAMESIIAKTRE 436 >UniRef50_Q3IUV3 TraH n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IUV3_RHOS4 Length = 465 Score = 217 bits (552), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 117/381 (30%), Positives = 204/381 (53%), Gaps = 16/381 (4%) Query: 12 CAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNV 71 CA + PA D D+ F+ + G N T+P +QGQ GY GSLY RT+ +N Sbjct: 18 CATAGSAIPAGLGD---DLKDFWERTGGGVNVTRPQAYQGQMGGYVTLGSLYMRTKPRNS 74 Query: 72 QLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIK 131 ++ LP + AGCGGID + GSFSFI+ E++ ++ IM NA+ + F+LAL++ P + Sbjct: 75 SMLQFQLPSVRAGCGGIDIFGGSFSFISKEEMIYLMEGIMQNASSFAFELALESLSPAVA 134 Query: 132 TAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASR 191 L+ + ++N+MN++SC+A Q ++G L+P+ + Q +CQ + G + FAD + R Sbjct: 135 EQVAKLRDLLQEVNAMNINSCEAGQMLVGSLWPKMDGASQHICQTVGGMNGTFADAVSRR 194 Query: 192 QGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTGSLVF 251 GC GK + A ++V +IN W A+ KN N + E M++TG+++ Sbjct: 195 HGCGTEGKQNQTLRGAKGALADQVPVDINYAWRAVKKNGFLASNPTIGELFMSMTGTIIT 254 Query: 252 --------GPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTISR 303 GP ++ R ++ A+++GGT I CND++KCL VT++R Sbjct: 255 TGAANDNEGPKHRT--IAPRAFTPEMLVALVDGGTIPILKCNDTNKCLNPTWKD-VTLAR 311 Query: 304 DNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVS--NSMIY 361 D+A +++ K++ ++ + DT L ++ G I T+ PV++ L + + I Sbjct: 312 DDAYFARVRKVVKALSDAIRDDTELTEEMIGIIGLTSAPVYETLKTARAYKYQFVDDEIA 371 Query: 362 QLTDYIGYDILLQYIQELIQQ 382 L++ + ++ + Y+ E + + Sbjct: 372 LLSELVAVELAMLYMNETLTE 392 >UniRef50_Q1N8Y9 Pilus assembly protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N8Y9_9SPHN Length = 449 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 126/376 (33%), Positives = 207/376 (55%), Gaps = 28/376 (7%) Query: 30 MNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGID 89 MN FF+ LG +N T PG +QGQ+AGY GG LY R +++ IS++LP ++AGCGGID Sbjct: 1 MNNFFSGLGGGANVTGPGAYQGQSAGYYTGGGLYTRAPQQDITPISISLPKVSAGCGGID 60 Query: 90 AYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNL 149 + G FSFIN +QL F+K +NA G+ F LA+ +I D +Q +A+ +N+ N+ Sbjct: 61 IFTGGFSFINSDQLVAFLKATANNAIGFAFKLAIDAISQQIGKVMDTMQDIANKVNTTNI 120 Query: 150 SSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASRQGCTVGGKSDSVRDKASD 209 SSC AA+ ++G ++ +C+ + + IF D+A +R GC K+ SV +D Sbjct: 121 SSCNAAKALVGTTASMLTSHKEYICETLGNDKGIFTDFAKARSGCGNENKAASVIQDNAD 180 Query: 210 KDKERVTKNI--NIMWNALSKNR--MFDGNKELKEFVMTLTGSLVF-----GPNGE---- 256 +KE + N W A+ K + N E EF+MTL G++VF G GE Sbjct: 181 PNKEGENALLPRNYTWWAIYKGKDASVAPNHEFAEFMMTLLGTVVFKGKGAGDEGEGSTR 240 Query: 257 -ITPLSARTTDRSIIRAMMEGGT---AKISHCND--SDKCLKVVADTPVTISRDNALKSQ 310 I P D + I+ M++G +K+ CND D CL V+ V + + AL+ + Sbjct: 241 VIAP------DLTAIKTMLDGDAVSGSKMLKCNDYTPDGCLD-VSQQAVPVDQAQALRPK 293 Query: 311 ITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKY--LVDPQMLGVSNSMIYQLTDYIG 368 I ++ S+++K ++DT L + E + T++P++K + +G+S S I L++ + Sbjct: 294 IQAMIISMRDKVLTDTALSNDEVALLGMTSVPLYKVVTVTATSSVGLSQSEIQTLSEVVA 353 Query: 369 YDILLQYIQELIQQAR 384 D++L ++ ++Q + Sbjct: 354 VDVVLSMVETMVQNVQ 369 >UniRef50_Q2NDI0 Pilus assembly protein n=6 Tax=Sphingomonadales RepID=Q2NDI0_ERYLH Length = 478 Score = 205 bits (521), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 125/453 (27%), Positives = 241/453 (53%), Gaps = 23/453 (5%) Query: 9 LVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV 68 L L AA + +P A A+V M++F + +G A+N T P ++GQ+AGY G+++ R Sbjct: 10 LTLAAASMIASPLA-ANVGDSMDRFMDDMGAAANVTGPTAFEGQSAGYYSLGNVWTRFPQ 68 Query: 69 KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVP 128 K + ++ LP AGCGGID + GSFSFIN ++ +K + +NA G+ F LA+ T P Sbjct: 69 KTTSIANLQLPRARAGCGGIDIFAGSFSFINASEMVALLKAVANNAVGFAFSLAIDTVCP 128 Query: 129 EI-KTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADW 187 E K ++F QK A +N+++++SC+ AQG++GGL+P+ ++ + +C+ I IF D+ Sbjct: 129 ECNKIMQEFSQK-AQLMNNLSINSCEMAQGLVGGLWPKGDLADKAICEAIGNSEGIFTDY 187 Query: 188 AASRQGCTVGGKSDSVRDKASDKDKERVTKNI--NIMWNALSKNRMFDG----NKELKEF 241 AA++ GC G+ S + A D V + N W+ L K+ F+ ++EL E+ Sbjct: 188 AAAKHGCGTRGQRASTNEGAG-ADYADVNPGVARNYTWHVLKKSAFFNPGGTFDRELAEY 246 Query: 242 VMTLTGSLVFGP-----NGEITPLSARTTDRSIIRAMMEGG---TAKISHCNDSDKCLKV 293 MTL G++++ P G+ P + + +++ A+++G T ++ C+++D CL Sbjct: 247 AMTLIGTVIYVPPKDDEAGKFVPFAGDASS-TLVSALLDGTQGQTVRVFRCDETDLCLNP 305 Query: 294 VADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQML 353 + ++++ A++ ++ L+ ++ + +DT + + EK + ++P++K L Sbjct: 306 TFEQ-MSLANAKAIRPRVALLIGNMVDAIRADTAIGNAEKELLQVASVPLYKILTVQAAY 364 Query: 354 --GVSNSMIYQLTDYIGYDILLQYIQELIQQA-RAMVATGNYDEAVIGHINDNMNDATRQ 410 G+ L + D+L + ++ +A R+M + DEA + + + Sbjct: 365 GRGMPTDDRDTLAEIASIDLLYAILDRIVSEAGRSMASFIAADEAKLAIWRGQVAEVRTG 424 Query: 411 IAAFQSQVQVQQDALLVVDRQMSYMRQQLSARM 443 + Q+ Q + A++ + + + + L+A M Sbjct: 425 LVQRQATGQAKVSAIMQIIEKTAMIENALAASM 457 >UniRef50_C9NPT8 IncF plasmid conjugative transfer pilus assembly protein TraH n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NPT8_9VIBR Length = 460 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/433 (30%), Positives = 222/433 (51%), Gaps = 13/433 (3%) Query: 23 SADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDIN 82 +A + + F++ L + N + +QGQAA Y GGS+Y R +++ L ++TLP I Sbjct: 22 AAGLQDALEAFYDGLDYQENVSTAHAYQGQAAHYYTGGSVYVRAPSRSLSLGAVTLPSIK 81 Query: 83 AGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMAS 142 AGCGGIDA++G FS IN E+L F K +++NA + DLALQT P+IK +D LQ +A Sbjct: 82 AGCGGIDAFMGGFSHINSEELVHFGKAVVANALPFAVDLALQTWAPQIKQIRDHLQSVAD 141 Query: 143 DINSMNLSSCQAAQGIIGGL--FPRTQVSQQKVCQDIAGESNIFADWAASRQGCTVGGKS 200 + ++SSCQAA+ I GL F Q SQ+ VC + +N F+DW A++QGC VGG++ Sbjct: 142 RWLNQSISSCQAAEAGISGLAAFAVPQ-SQKHVCATMGVRNNAFSDWVAAQQGCGVGGQA 200 Query: 201 DS-VRDKASDKDKERVTK-NINIMWNALSKNRMFDGNKELKEFVMTLTGSLVFGPNGEIT 258 + ++ +D +TK + N++W+AL + L EF+M+ TG++++ Sbjct: 201 RTQLKQARQSEDLSALTKFHHNLVWSALMAVPQLASDPSLAEFLMSTTGTVIYDTTQHRH 260 Query: 259 PLSARTTDRS-IIRAMMEGGTAKISHCND-SDKCLKVVADTPVTISRDNALKSQITKLLA 316 + T+ + ++ ++ GG ++ HC D S K T+S +L+ ++ + L Sbjct: 261 QYPSLVTESNRLVETLLTGGRVELYHCQDRSAKGCLAPQRAWRTVSPAQSLQQRVQRTLI 320 Query: 317 SIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYI 376 S+ DTPL ++ + +T P+ G + + I D+L ++ Sbjct: 321 SLDLALREDTPLTTHQRALLEATRSPILAVFNSVHRAGSTPNFAAH-ARVIAVDLLETFM 379 Query: 377 QELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQ---QDALLV-VDRQM 432 Q ++ R V D + I ++ A F Q + Q Q+A + Q Sbjct: 380 QAMLSNVRQAVVRQPLDRDELTEIEQSIIRVQAFSARFTQQAREQLQWQNAFIAHYQYQD 439 Query: 433 SYMRQQLSARMLS 445 ++ RQ+L R+LS Sbjct: 440 AHQRQRLR-RLLS 451 >UniRef50_Q6MB86 Putative F pilus assembly protein traH n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB86_PARUW Length = 452 Score = 194 bits (494), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 115/391 (29%), Positives = 212/391 (54%), Gaps = 15/391 (3%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +KPLL LL+ + AD+++D+ + ++L S+ + ++ Q AGY GG + Sbjct: 1 MKPLLFFI--LLSFSLTLRADLHNDLKSYLSELNTYSHVDKNEIYHSQRAGYMTGGGISI 58 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R + L ++LP +AGCGGID + G SFI+ +QL +K I S+A GY F L ++ Sbjct: 59 RNGASHTALAQVSLPKFDAGCGGIDIFTGGISFISHDQLIAALKNIASSAQGYAFMLGIE 118 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIF 184 T P I + ++ A+ INS+ ++SC+ A G++G ++P ++Q++C+ A Sbjct: 119 TVSPLIASTMKQMETWANAINSLGINSCEVATGLVGSVWPARTAAKQQICRS-AKNGGFA 177 Query: 185 ADWAASRQGCT-VGGKSDSVRDKASDKDKE-RVTKNINIMWNALSKNRMF--DGNKELKE 240 + + +R C G + +++ A D + + + N+ W A+ K+ N+++ E Sbjct: 178 SSFINARHQCADEGDYAKTMQSMAKDPLYDGMLLEEYNLTWKAVQKHPFLAKKENRKMAE 237 Query: 241 FVMTLTGSLVFGPNGE--ITPLSARTTDRSIIRAMMEGGTAKISHC---NDSDKCLKVVA 295 +M+LTG+L+ + + P +R D S + ++EGGT ++ C N CL + Sbjct: 238 EIMSLTGTLIIRRDKSLVVEPWPSRIYDDSFLPILLEGGTTRVYQCTGGNAKQNCL-ALE 296 Query: 296 DTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKY--LVDPQML 353 +TI + A K +I + LA+IQ K ++DTPL +E +S + +P+FK ++ Sbjct: 297 MKELTIPAEQAWKGRIKQALATIQQKILADTPLASEEIDLLSKSRLPLFKIVNVLTAYKR 356 Query: 354 GVSNSMIYQLTDYIGYDILLQYIQELIQQAR 384 VS +Y++ + +G ++L+QY++E+I R Sbjct: 357 EVSPISLYEVAEIVGNEMLIQYLREIIGTVR 387 >UniRef50_Q0F376 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F376_9PROT Length = 463 Score = 187 bits (474), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 135/469 (28%), Positives = 225/469 (47%), Gaps = 38/469 (8%) Query: 10 VLCA--ALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQ 67 +LCA A+ + ASA +N DM F++ LG + N T GV+Q QA GY GG ++ + Sbjct: 4 ILCALLAVACLATEASAGINQDMRNFYSSLGMSGNVTPAGVYQSQAGGYFTGGGMFIKAP 63 Query: 68 VKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTV 127 V++ QL+S+T P I+ GCGGID YLG FSFIN Q + ++ I +NA GY F+LALQT Sbjct: 64 VRSYQLLSITPPSISEGCGGIDLYLGGFSFINKAQFTQMLRNIGNNAVGYAFNLALQTFA 123 Query: 128 PEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADW 187 P+I + LQK+ IN +++SC AAQ + GL + K CQ IA I +D+ Sbjct: 124 PQIYSTMQDLQKVIQKINQASINSCHAAQTAVNGLVGVLTENSAKGCQAIAMARGIVSDY 183 Query: 188 AASRQGCTVGGKSDSVRD--KASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTL 245 + + C GG ++ + ++KE+ N++W + K + +KEF+M+L Sbjct: 184 KDAERYCQSGGARRNIYYGMPLTPQEKEQQMARKNLLWTGMKKQTYTGLSASMKEFLMSL 243 Query: 246 TGSLVFGPNGEITPLSARTTDRSIIRAMMEGGT-----AKISHCNDSDKCLKVVADTPVT 300 G+ V P ++ + GT A++ C+ + CLK V Sbjct: 244 VGTYVIETAAGGQPDVRYLAPTALKLEQLVNGTGGVAAAEVYKCDTATDCLK---PAKVK 300 Query: 301 ISRDNALKSQITKLLASIQNKAVSD-----TPLDDKEKGFISSTTIPVFKYLVDPQMLGV 355 I D + Q+ L I+ K S+ L + I + +PV K + LG Sbjct: 301 IPLDG-YRKQVQAALDEIRTKLSSERFGAPAQLTANTRKLIGISRLPVLKMMTTAVALGP 359 Query: 356 SNSMIY--QLTDYIGYDILLQYI----QELIQQARAMVATGNYD--EAVIGHINDNMNDA 407 S ++ +L + + +D++ Y+ + + AR + AT + A++ + D+ N Sbjct: 360 SVALQVENELVEPVAFDMVATYLDWAYKAAVDSARQVAATAPKELWGALMASV-DSRNRE 418 Query: 408 TRQIAA---FQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHF 453 R+I F + ++ Q A ++ Q L + + +Q + + Sbjct: 419 FREITKNRNFMAATEILQKA--------RFLDQVLISNLTPHFQEVFQY 459 >UniRef50_D2U4N5 Conjugal transfer pilus assembly protein n=1 Tax=Arsenophonus nasoniae RepID=D2U4N5_9ENTR Length = 106 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 75/104 (72%), Positives = 90/104 (86%) Query: 352 MLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQI 411 MLGVSNS++YQL DYIGYDILLQY+QELIQQAR M++ GNY + VI + +N+N AT I Sbjct: 1 MLGVSNSVLYQLADYIGYDILLQYMQELIQQARGMLSIGNYPQPVIDTLLENLNQATAMI 60 Query: 412 AAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGG 455 FQS+VQVQQDALLVVDRQ+SYMRQQ+S++ML+RYQNNYHF G Sbjct: 61 NQFQSRVQVQQDALLVVDRQISYMRQQVSSKMLTRYQNNYHFHG 104 >UniRef50_A1W643 TraH family protein n=5 Tax=Betaproteobacteria RepID=A1W643_ACISJ Length = 482 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 107/380 (28%), Positives = 185/380 (48%), Gaps = 19/380 (5%) Query: 14 ALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQL 73 +LL T + AD+NS++N FN LG N T PG ++GQ GGSL R+ K QL Sbjct: 21 SLLCTTMPSRADLNSEVNDMFNNLGAIGNYTAPGAFRGQTYNTYTGGSLMMRSPNKVYQL 80 Query: 74 ISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTA 133 ++ P AGCGGID + GSFS I+ ++ + ++ I + G F LAL+ P + Sbjct: 81 AAIQFPSAKAGCGGIDVFGGSFSHISAQEFKNMLRNITAALPGIAFQLALEAVSPLLGGL 140 Query: 134 KDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASRQG 193 + + + + IN+ ++SC+ A+ I+ S Q+ C D+A + + +D A+R+ Sbjct: 141 TKWAKGLETWINNARINSCETAKAIVSTAAEAVGYSAQETCADLAIDMGLESDRDAARKR 200 Query: 194 CTVGGKS--DSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTGSLVF 251 C S S R + + N+ W AL + + E +E +M++ G++++ Sbjct: 201 CGTDRPSILSSARSSGDANVRNKAPFVGNLTWKALQYTGAYLDDAE-RELIMSMVGTIIY 259 Query: 252 GPNG---EITPLSARTTDRS-IIRAMMEG-GTAKISH---CNDSDKCLKVVADTPVTISR 303 P + P++ T S ++ G GT + H CND C V +T + Sbjct: 260 YPEESKRDPEPIAPTLTSISQLLYGQAAGSGTDVVQHLRRCNDYTNCDVVSLNTNYS--- 316 Query: 304 DNALKSQITKLLASIQNKAVSDTPL--DDKEKGFISSTTIPVFKYLVDPQML---GVSNS 358 +++ ++ SI +K + TP+ + E GF++ TT PV+K L + G+++S Sbjct: 317 HVPFTAKVETMMRSISDKIATRTPIPNNSAEVGFVNQTTEPVYKMLSVGTSIPGSGLADS 376 Query: 359 MIYQLTDYIGYDILLQYIQE 378 +I Q D I D +++ Sbjct: 377 LIGQYRDVIAADYAYVFLER 396 >UniRef50_A0B4P9 TraH family protein n=5 Tax=Proteobacteria RepID=A0B4P9_BURCH Length = 481 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 129/481 (26%), Positives = 219/481 (45%), Gaps = 37/481 (7%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 M + ++ + AA+ + P + ++ M Q F+ + N + P QG+ GGS Sbjct: 1 MKPTRWIVAMTAAVFAIAPVCTQAMS--MQQVFDSINAMGNVSSPRALQGETMDMYSGGS 58 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 ++ RT K QL S+T P+ AGCGGID + G FSFIN EQ ++ I SNA GY F L Sbjct: 59 VFMRTPHKTYQLASVTAPEWGAGCGGIDLFTGGFSFINKEQFVALLRNIGSNALGYAFKL 118 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGE- 180 ALQ P LQ +A D+N MN+ SCQAA+GI+ + P +Q D G Sbjct: 119 ALQNLCPTCDNVMQSLQAIARDVNRMNIDSCQAAEGIVNAVTPVAWKKEQANLADTLGPF 178 Query: 181 SNIFADW--AASRQGCTVGGKSDSVRD-KASDKDKERVTKNINIMWNALSKNRMFDGNKE 237 +N+++D A + G + + ++ ASD + N+ W AL + + D + Sbjct: 179 TNLYSDMTDAWTNTGNSSAQAAQTINTATASDSNLAAKQPYGNVTWQALQQ--LPDLSTS 236 Query: 238 LKEFVMTLTGSLVF-GPN----GEITPLSARTTDRSIIRAMM-------EGGTAKISHCN 285 +EF+M+L G+++F P+ E+ P+ ++ ++ G T ++ C+ Sbjct: 237 DREFLMSLVGTVIFPAPSDSGGTEVNPVFLPRIGSLTVQELVGNDPAANSGTTIQVYVCD 296 Query: 286 DSDKCLK-VVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVF 344 ++ KCL V + T R ++ ++ + +I +++ P D F+S T +PV+ Sbjct: 297 ETTKCLNPSVQEIGYTPFR-TLVQQKLQVITDAIASRSAIPNPADTFR--FLSMTDLPVY 353 Query: 345 KYLVDPQMLGVSNSMIYQLTDY---IGYDILLQYIQELIQQARAMVA--------TGNYD 393 K + L S+ L+ Y I YI + R +A T D Sbjct: 354 KMIAVGTRLNNSSLADQLLSTYQSLIAAKYAEAYIHGSAEDLRRAIARYGTVKSSTSLLD 413 Query: 394 EAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHF 453 EA +N N++ + + Q Q + Q+ + + + A + S +N+ F Sbjct: 414 EAT--KLNTNIDTVESEARSVVMQAFSQTSNAWQLVEQLQSIERAVHANVSSSLRNSLAF 471 Query: 454 G 454 G Sbjct: 472 G 472 >UniRef50_UPI00016AD114 TraH family protein n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016AD114 Length = 482 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 120/402 (29%), Positives = 186/402 (46%), Gaps = 37/402 (9%) Query: 13 AALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQ 72 A L+ P+A+ M FN + N T PG QGQ GGSL+ R + Q Sbjct: 23 ACLVYTQPSAAMS----MQDLFNSVNAMGNVTGPGALQGQTMDMFSGGSLFMRMPRRTYQ 78 Query: 73 LISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKT 132 + SMT P NAGCGGID ++G FSFIN EQ ++ I SNA GY F LA+Q P Sbjct: 79 VASMTPPSWNAGCGGIDLFMGGFSFINKEQFVAMLRNIGSNALGYGFKLAIQNLCPTCDN 138 Query: 133 AKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQV-SQQKVCQDIAGESNIFAD----W 187 L A +N +N+ SC AA+G++ P T +Q ++ +SNIF + W Sbjct: 139 VMQALAATAQQVNRLNMDSCTAAKGLVNAALPDTWTRGKQDAAKNFGVDSNIFENITDAW 198 Query: 188 AASRQGCTVGGKSDSVRD--KASDKDKERVTKNINIMWNALSKNRMFDG-NKELKEFVMT 244 K++ V D K S+ + V N++W AL + DG E + +M+ Sbjct: 199 TNVMDD---ESKANDVIDSVKNSNPQAKDVLPTGNVVWKAL---KHVDGMTDEDRMVLMS 252 Query: 245 LTGSLVFGPNGEITPLSAR---TTD---RSIIRAMMEGGT---AKISHCNDS--DKCLKV 293 L GS++F P TP + R TD ++I + ++ G+ I C+ + D CL Sbjct: 253 LVGSMIF-PTDSGTPQTPRPLMPTDIDVATLIGSAIDKGSKVNVPIWRCDTTTDDGCLHP 311 Query: 294 VADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQML 353 D T S +++++T + I N++ D D+ F+++T +PV+ + Sbjct: 312 YPDNLSTDSFYTMVENRMTSIADHIANRSPHDNV--DQVIAFLNTTDLPVYSMIATGTRY 369 Query: 354 G---VSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNY 392 G +S+ I D + YI+ ++ + A G Y Sbjct: 370 GNTSLSDGAIATYVDLVAAKYAEVYIRRCVKDLQE--AIGKY 409 >UniRef50_B4EQN3 Putative TraH conjugative transfer protein n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4EQN3_BURCJ Length = 484 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 113/353 (32%), Positives = 167/353 (47%), Gaps = 26/353 (7%) Query: 10 VLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVK 69 V A L PAA+ M Q F+ + N T P QGQ GGSL+ R + Sbjct: 24 VSIACLAYTQPAAAMS----MQQLFDTVNAQGNYTSPAALQGQTLNMYSGGSLFMRMPKR 79 Query: 70 NVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPE 129 QL S+T P NAGCGGID ++G FSFIN EQ ++ I SNA GY F LA+Q P Sbjct: 80 TYQLSSVTPPSWNAGCGGIDLFMGGFSFINKEQFVAMLRNIGSNALGYGFKLAIQNLCPT 139 Query: 130 IKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQV-SQQKVCQDIAGESNIFADWA 188 LQ A IN +N+ SC+ A+G++ P T +Q ++ +SNIF + Sbjct: 140 CDNVMQALQATAQQINRLNMDSCETAKGLVNAALPDTWTRGRQDAAKNFGVDSNIFENVT 199 Query: 189 -ASRQGCTVGGKSDSVRD--KASDKDKERVTKNINIMWNALSKNRMFDG-NKELKEFVMT 244 A K+D V D K S+ + V N++W AL K DG E + +M+ Sbjct: 200 DAWTNVMNDENKADDVIDQVKQSNPAAKDVLPTGNVVWKALKK---IDGMTDEERMVLMS 256 Query: 245 LTGSLVFGPNGEI---TPLSARTTD-RSIIRAMMEGGT--AKISHCNDS--DKCLKVVAD 296 L GS++F G PL D ++I ++G T I C+ + D CL +D Sbjct: 257 LVGSMIFPTQGNAQAPKPLMPTDIDVATLIGNGVDGDTINVPIWRCDTTTDDGCLNPYSD 316 Query: 297 TPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEK--GFISSTTIPVFKYL 347 T S +S + + ++ + + +P DD + F+++T +P++ L Sbjct: 317 QLSTRS----FRSMVMTKMNNMVDHIAARSPHDDVSQVIAFLNTTDLPIYAML 365 >UniRef50_A1RH72 TraH family protein n=16 Tax=Gammaproteobacteria RepID=A1RH72_SHESW Length = 462 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 123/461 (26%), Positives = 210/461 (45%), Gaps = 50/461 (10%) Query: 9 LVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV 68 L+ CA + + + A + +MNQ F G +NTT PGV++ Q G GGS+ R ++ Sbjct: 9 LIACA--IGFSSMSQASLQQEMNQLF---GSMTNTTAPGVFESQRRGVISGGSVVVRNRI 63 Query: 69 KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVP 128 N L+SM P AGCGGID + GS SF+N +Q + ++ + +NA GY F LAL Sbjct: 64 MNENLVSMVPPSFQAGCGGIDMFAGSLSFVNADQFVQLLRSVAANAKGYAFQLALSAMCE 123 Query: 129 EIKTAKDFLQKMASDINSMNLSSCQAAQGIIG---GLFPRTQVSQQKVCQDIAGESNIFA 185 + + LQK +N +SCQ AQG++ F + ++ + + G ++F Sbjct: 124 KCSQHMETLQKKIQQLNEYFGNSCQMAQGVVNDTLAAFGKKGQTEASMLSSLKGAGDVFT 183 Query: 186 DWAASRQGCTVGGKSDSVRDKASDKDKERVTKNI--NIMWNALSKNR----MFDGNKELK 239 W+ S GK+ + AS V K I N++W AL ++ G+ Sbjct: 184 SWSESN------GKNP--YENASSVAASDVNKTIKGNLVWRALKRHSASSWFASGDDRFL 235 Query: 240 EFVMTLTGSLVFGP-------NGEITPLSARTTDRSIIRAMMEGGTAKISHCN--DSDKC 290 E VM++TGS++ G G+ L+ ++ I ++ GG + C+ D C Sbjct: 236 EAVMSVTGSIIVGDLANAADGQGKAPKLTRLNGNKVTIEHLIHGGNVAMYRCDTVTQDGC 295 Query: 291 LKVVADTPVTISRDNALKSQITKLLAS-------IQNKAVSDTPLDDKEKGFISSTTIPV 343 L T VT++ L +Q+ LL I A + EK F++S + Sbjct: 296 LNPTI-TNVTLT---GLSTQVENLLLGTGSSNGIIFKFARNTGAASTTEKAFMTSAPASI 351 Query: 344 FKYLVDPQML--GVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHIN 401 + L G + S + +I ++ +++++ AR+ +G D A + Sbjct: 352 GGMIRTLSALNEGAARSFASRAAPFIAVEMARALVEDMLNAARS--TSGVEDHAYAKLLT 409 Query: 402 DNMNDATRQI----AAFQSQVQVQQDALLVVDRQMSYMRQQ 438 +++ A RQI AA Q + +Q+ L ++ + +R+Q Sbjct: 410 EDLERARRQINEEYAALQRRYGSEQELLAHFNQVIQTIRKQ 450 >UniRef50_C4NV64 TraH n=17 Tax=Gammaproteobacteria RepID=C4NV64_ECOLX Length = 477 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 111/360 (30%), Positives = 175/360 (48%), Gaps = 36/360 (10%) Query: 6 KPLLVL-CAALLTVTPAASADVN---SDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 + LL L AA L + P + N S M++ FN++ SNTT PGV++ Q G GG Sbjct: 9 RSLLALSVAASLVMAPTGAIAANGLQSQMDKLFNEM---SNTTPPGVYESQRRGVLAGGR 65 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 A+T++ + L+S P AGCGG+D + GS SFIN +Q+ + ++ + +NA GY F L Sbjct: 66 FTAKTRIFDENLVSFAPPSWKAGCGGVDLFGGSLSFINADQIVQLLRAVAANAKGYAFQL 125 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGES 181 AL P+ + QK +N +SCQ AQG + L + + A S Sbjct: 126 ALDNVFPDGAKWIENFQKKVQALNQHLGNSCQLAQGFVNDLTSGMDLKHKTDASITATTS 185 Query: 182 NIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNI-NIMWNALSKNRMFD----GNK 236 ++ D+ S+Q + GKS KA+ D+ K I NI+W L N G+ Sbjct: 186 GLYEDFFGSKQETS--GKSPLEELKANKPDE--YNKMIGNIVWKQLKSNNANTWFQYGDN 241 Query: 237 ELKEFVMTLTGSLVFG-----PN-----GEITPLSARTTDRSIIRAMMEGGTAKISHCN- 285 L E +M+LTG+++ G PN + TPL+ ++ + ++ GG+ +I C+ Sbjct: 242 TLLEAIMSLTGTVIIGDLVNDPNSTGTGAKTTPLTTLPGNKITLSDLISGGSVEIYSCDS 301 Query: 286 DSDKCLKVVADTPVTISRDNALKSQITKLL-------ASIQNKAVSDTPLDDKEKGFISS 338 D+ CL + + + +K+QIT +L I A + L D EK F+S+ Sbjct: 302 DTTNCLSAGSSNKTVVLK--GIKNQITDMLLGTSSTPGVIYKYATNSGTLTDPEKAFVSN 359 >UniRef50_Q1RJF7 F pilus assembly protein TraH n=31 Tax=Rickettsieae RepID=Q1RJF7_RICBR Length = 446 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 98/353 (27%), Positives = 175/353 (49%), Gaps = 11/353 (3%) Query: 38 GFASNTTQPGVWQGQAAGYAYGGS-LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFS 96 G + N T+PG +Q QAAGY Y L RT + IS+T P +N C GID+YLGSFS Sbjct: 44 GMSVNVTKPGSYQSQAAGYYYAAGGLSIRTNKTSFNPISITPPSLNMSCSGIDSYLGSFS 103 Query: 97 FINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQ 156 I+GE+L + +K I + A Y F L L+T P+I+ A L+ +A ++N C+ + Sbjct: 104 IISGEELVQLMKNIGTQAKAYAFSLGLKTFAPQIENALKDLRNLAMEMNQFAKGDCEMTK 163 Query: 157 GIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVT 216 I + P+ ++ VC+D+ S D+ A+ + C + ++D E + Sbjct: 164 AIFASILPKDSAMRESVCRDLQSSSGF--DYFAAGKKCRSDLEQKQALANIQNQDPELML 221 Query: 217 KNINIMWNALSKNRMFDGNKELKEFVMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEG 276 N NI A K + + ++ +M++TG+++ N S ++S I + G Sbjct: 222 TNYNIFIKAAEKAGIPEN---MRSAIMSMTGTIIVRDNNVYFLESLAQDEKSWIAHLKGG 278 Query: 277 GTAKISHCNDSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFI 336 +A I C++S+ CL +TI D + + + L +++K S+ + + F+ Sbjct: 279 ESASIYTCDNSN-CLNPDLRRNITIVLDQSYQGKAKTKLDELKSKLTSNNEFSNADISFL 337 Query: 337 SST--TIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMV 387 SS P++ Y+ + GV +++ ++ + LLQ+++E+ + R V Sbjct: 338 SSIGEAFPIYDYITLEAISGV--TILDSSSELVASYSLLQHLKEVTSEVRKAV 388 >UniRef50_D0SGX6 TraH family protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SGX6_ACIJO Length = 472 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 114/401 (28%), Positives = 182/401 (45%), Gaps = 37/401 (9%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSD--MNQFFNKLGFASNTTQPGVWQGQAAGYAYG 59 M +IK L VL AL +AS VNS M+ F+++ N QGQ Y G Sbjct: 1 MNKIKAL-VLGLAL----GSASLSVNSSQSMSDVFDQINAYGNVAGGAAIQGQTMNYYTG 55 Query: 60 GSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFF 119 GS + R L S+T P ++AGCGGID Y G FSFIN EQ K I S A GY F Sbjct: 56 GSAFVRIPKNTYNLASLTPPSVSAGCGGIDLYTGGFSFINKEQFIAMAKNIGSQALGYGF 115 Query: 120 DLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQV-SQQKVCQDIA 178 LA+Q P LQ IN MN+ SC+AA+GI+ + + +++ + Sbjct: 116 KLAIQNLCPTCDNVMQALQSTTQAINRMNIDSCEAAKGIVNATTAQLDLKGREQSAINFG 175 Query: 179 GESNIFADWAASRQGCT-VGGKSDSVRDKASDKD---KERVTKNINIMWNALSKNRMFDG 234 NIF+D + G GK++ V + D ++ N N+ W ALS+ + Sbjct: 176 TFKNIFSDATDAWSGIKGNAGKTEQVNQNLQNSDPNIRDHTPSNGNLTWKALSRAGLTTT 235 Query: 235 NKELKEFVMTLTGSLVF----GPNGEITPLSARTTDRSIIRAMMEGGTAKIS----HCND 286 K++ +M + G++ N + P + R + I + + G + C + Sbjct: 236 EKQM---IMGMIGTVSITKDANNNNIVKPYARRVNN--ITDFIGKPGETSVKLPVWACGN 290 Query: 287 S---DKCLKVVADTPVTISRDNALKSQITKLLASIQNKA--VSDTPLDDKEKGFISSTTI 341 D+C ++ A + S +K ++ L+ +I N+ + L D F++ T I Sbjct: 291 GTGVDECTELTAAEQNSTSFYWMVKLKLDGLINAIANRQNITNSQELID----FVNVTDI 346 Query: 342 PVFKYLVDPQMLGVSNSMIYQLTDYIGYDIL-LQYIQELIQ 381 PV+K + G ++ + L +Y Y++L +Y Q ++ Sbjct: 347 PVYKLVAVNTRYGNGDAARFALNNY--YELLAAKYAQAYVE 385 >UniRef50_Q1MY31 TraH n=1 Tax=Bermanella marisrubri RepID=Q1MY31_9GAMM Length = 475 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 114/462 (24%), Positives = 204/462 (44%), Gaps = 44/462 (9%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +K LL+L + + AD+ ++ F+ G SNTT+PGV++ Q A Y G Sbjct: 1 MKKLLILASLSIFSYFTWGADIGDEVESMFD--GAYSNTTEPGVYKTQGASYVTFGGYSE 58 Query: 65 RTQV--KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLA 122 R + KN+ L+++ P + AGCGGID G FS I+G++ ++ I NA FF L Sbjct: 59 RNPITKKNINLVNINPPKVTAGCGGIDLQAGGFSMIDGDEFVDNLRNIGQNAKSLFFMLG 118 Query: 123 LQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESN 182 LQ P I + + K D NL SC+AA ++GG + +S Sbjct: 119 LQLVTPTINDVMNKVNKFQKDYLQFNLDSCEAATQLVGGAMEYAGAEGGECIVRRMQQSG 178 Query: 183 IFADWAASRQGCTVG-GKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEF 241 D+A +++ CT G G+ +++ + ++ +K N++W L ++ F N + Sbjct: 179 --DDYAEAKKHCTTGMGRRNTM--ETGGENTVTFSKG-NLIWWHLMQDDFFKNNLDYSLL 233 Query: 242 VMTLTGSLV--FGPNG-----EITPLSARTTD-------RSIIRAMMEG-----GTAKIS 282 VM L G+++ + N E+ +S T+ R+II A++ G ++ Sbjct: 234 VMNLLGTIIVKYDDNSADSGKEVIRISRAATEAGLTTDGRNIINALLSGTEGPAANLQLK 293 Query: 283 HCND----SDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISS 338 C D D C+ VTI + + + +A I ++ L F+S Sbjct: 294 TCTDMNNTKDACINYNGSNDVTIDW-KGMTTYVQDTIADINTAISNNGSLSSDALAFLSQ 352 Query: 339 TTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIG 398 T IP++++++ + S + +T I + L ++ ++AT E V Sbjct: 353 TPIPLYRFILLERANNPS-AQFSTVTRDIADKLALSHLYS------GLLAT---IEVVRD 402 Query: 399 HINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLS 440 + D ++Q+ AF + V A++ + + Q+LS Sbjct: 403 RVGDTDMTESKQVKAFMKDLDVVASAIINEQQTTEFRLQELS 444 >UniRef50_Q8L263 Pilus biogenesis protein n=2 Tax=Enterobacteriaceae RepID=Q8L263_PROVU Length = 483 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/313 (29%), Positives = 143/313 (45%), Gaps = 35/313 (11%) Query: 1 MMPRIKPLLVLCAALLTVTPAASAD-VNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYG 59 M I LVL A LL+ T A+AD +N +N F G SNTT+PG + G Sbjct: 14 MKRSILSSLVLMAGLLSFTSNANADSINDQLNNMF---GSMSNTTRPGDYHSVTRDGYTG 70 Query: 60 GSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFF 119 G R +++++ +++ LP GCGGID + GSFSFIN ++ + ++ I +NA+G F Sbjct: 71 GGFTLRNKLRSLTPVNIQLPSAAGGCGGIDLFGGSFSFINADEFVQMLRNIAANASGLAF 130 Query: 120 DLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGII------GGLFPRTQVSQQKV 173 LAL + A +Q + +N + +SCQ A+G++ G + VS Q Sbjct: 131 QLALNAMDAVLDNAISRMQAVIQQMNDLTANSCQLAKGLLVDTAAAFGSEAKASVSAQLS 190 Query: 174 CQDIAGESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNI-NIMWNALSK---- 228 ++ + + F G G KS K D K K+ N+MW L+ Sbjct: 191 SDGLSDQFDAF-------MGGMNGSKSSPA--KKEDAGKRVACKDYGNLMWCLLNNGQFT 241 Query: 229 NRMFDGNKELKEFVMTLTGSLVFGPN----------GEITPLSARTTDRSIIRAMMEGGT 278 N+ + KEF+M++TG+ + N G L A + A++ G T Sbjct: 242 NQFLGSTDQQKEFIMSITGTYIVPKNISTDDTGNLIGGAPILIAPLDTSDALEALVNGNT 301 Query: 279 A-KISHCNDSDKC 290 A I C D++ C Sbjct: 302 AFDIYKCTDTESC 314 >UniRef50_B4RLQ8 TraH n=13 Tax=Neisseria RepID=B4RLQ8_NEIG2 Length = 452 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 107/441 (24%), Positives = 193/441 (43%), Gaps = 58/441 (13%) Query: 37 LGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFS 96 +G +N T+ G + GQ+ GG + R V ++ L ++ LP I+AGCGGID + GSFS Sbjct: 1 MGAEANYTEAGAFHGQSGSLYTGGGMSVRFPVSDISLGNIQLPSISAGCGGIDFFAGSFS 60 Query: 97 FINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQ 156 F+N EQ +F + + +NAAG FDLAL+ P I+ A ++ + + +N +L+SC+ +Q Sbjct: 61 FVNKEQFIQFTRNLGNNAAGVAFDLALKALDPMIQDAIGGIRDLVNYVNQNSLNSCKLSQ 120 Query: 157 GIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASRQGCTVG----GKSDSVRDKASDKDK 212 I+GG + C+ + +S D A C ++D VR+ +D Sbjct: 121 DIVGGAMGKLGSLASSNCRAASVDSGSSNDPAEGAWYCQAAKNLVHEADKVRNTGKPQDT 180 Query: 213 ERVTKNINIMWNALSKNRMFDGNKEL----KEFVMTLTGSLVFGPNGEITPLSARTTDRS 268 T N+ + A+ + + G + +F ++ G++VF TPL+ D+ Sbjct: 181 ISFTGG-NLTYEAM---KNYTGQRSKLGIDMDFYYSMLGTIVF------TPLTQHEGDKD 230 Query: 269 IIRAMMEGGTAKISH-------------------------CNDSDKCL--KVVADTPVTI 301 ++ KI C D K L V I Sbjct: 231 KYTVGIQSFEPKILSIQDLLNGKNNAGGEIREKVVLDMWTCKDGSKKLMENCTEKNDVEI 290 Query: 302 -SRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMI 360 S + +I L +I+N + + ++++ +P+ K V LG Sbjct: 291 PSLRYMVHKRIETLPTAIRNNQGWNLSTRKQIAAIVNNSKLPILKMAVSDAFLGTGYLKK 350 Query: 361 YQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAA----FQS 416 + D I DI+ + + +Q R+ + G Y++ +D +A R++ A +S Sbjct: 351 TAVLDAIAVDIMANILDQSERQVRSTL--GMYNKT-----DDASGEAVRKLFANLGELRS 403 Query: 417 QV-QVQQDALLVVDRQMSYMR 436 ++ Q + D++ ++ + S MR Sbjct: 404 RIYQERIDSMKKIEIEESMMR 424 >UniRef50_B7XGS6 Putative pilus assembly protein n=2 Tax=Pseudomonas RepID=B7XGS6_PSEPU Length = 466 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 108/402 (26%), Positives = 178/402 (44%), Gaps = 44/402 (10%) Query: 4 RIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLY 63 +IKP+ + A L V A A++ +N+ F+ + N T PG ++ G GGS+ Sbjct: 2 KIKPIALAVA--LMVPFGAHANIQQQVNEMFSGM---INVTSPGAYKTATRGVITGGSVV 56 Query: 64 ARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAA----GYFF 119 R ++ LIS+T P GCGGI+ Y GSFSFINGE+ ++ + SNAA G+ F Sbjct: 57 LRNRISTANLISITPPSAKGGCGGINLYSGSFSFINGEEFVALMRNVASNAAGIVSGFAF 116 Query: 120 DLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAG 179 +LAL + L +N M +SCQ A G++ + S A Sbjct: 117 ELALDAMDAQTGGVIRNLANKIQALNQMFSNSCQLASGLVTNAKKAYEESTDFKSAMTAF 176 Query: 180 ESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNI-NIMWNALSK----NRMFDG 234 SN+ +D+ ++ K DS ++ + K +N N++W A+ K +++ G Sbjct: 177 GSNVSSDFFTAKS-----TKEDSPANRIAASGKAVQCENTGNVLWCAMMKSGLQSQILFG 231 Query: 235 NKELKEFVMTLTGSLVF--------GPNGEITPLSARTTDRSIIRAMMEGGT---AKISH 283 + E EF+M++ GS G N P+ T ++ ++EG T K+ Sbjct: 232 SDENAEFIMSMVGSYNVSLTNDASGGKNFAAHPMPKLITGEG-LKILVEGSTNLDVKVYQ 290 Query: 284 CNDSDK-CLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIP 342 C+ D C + I + K T++L +QN + L+ G ++ Sbjct: 291 CDQDDPDC------SEPNIRTLTSFKGLETRILEDLQNNGI----LERFANGTATAADGN 340 Query: 343 VFKYLVDPQMLGVSNSMIYQLTDY-IGYDILLQYIQELIQQA 383 YL + +GV+ I Q GYD L Q+ +++ A Sbjct: 341 RIAYLASSR-VGVNLMKITQKAGAQSGYDYLNQFAKKIAADA 381 >UniRef50_A4JTN5 TraH family protein n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JTN5_BURVG Length = 483 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 87/279 (31%), Positives = 133/279 (47%), Gaps = 46/279 (16%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 M R K +++L + + +V +++A N+ + + + F SN+T P + Q+ G GG Sbjct: 1 MKMRFKRVILLMSLVCSVGMSSTA--NAGLQDALDGM-FMSNSTTPDSFTNQSRGGLVGG 57 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 R ++N+ LIS P ++AGCGGID + GSFSFIN +QL +QI +NA G F Sbjct: 58 GASVRMPIRNINLISFDPPRLSAGCGGIDLFGGSFSFINADQLVALFRQIAANAVGVAFK 117 Query: 121 LALQTTVPEI-KTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAG 179 A+ P + K +DF K+A+ +NSM ++C A I+ +T VS G Sbjct: 118 AAIDAINPALGKLMQDFQNKIAA-LNSMMKNTCALATTIM----DKTGVS---------G 163 Query: 180 ESNIFADWAASRQGCTVGGKSDSVRDKASDKDK-----ERVTKNI----------NIMWN 224 F D S + G KS + D S D VT+N+ N+ W Sbjct: 164 AIRSFVDENVSSE---TGSKSGMLTDMFSGIDSFLSNANTVTRNVQKSGKEPELGNLTWM 220 Query: 225 ALSKNRM--FDGNKEL--------KEFVMTLTGSLVFGP 253 AL+ + GN + E VM+L G++V GP Sbjct: 221 ALNTTQAGQMLGNPQTGETDANGANEIVMSLIGTVVNGP 259 >UniRef50_C4Z010 Putative uncharacterized protein n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4Z010_9RICK Length = 460 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 100/453 (22%), Positives = 208/453 (45%), Gaps = 37/453 (8%) Query: 9 LVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQ- 67 +++CA L + AA A + + M G SN+++ + Q Q G+ GGS+ +T Sbjct: 1 MIICALLQSA--AAYAGIETLMKSVMPS-GTLSNSSKAALIQDQLGGHLIGGSMVVKTPG 57 Query: 68 VKNVQLISMTLPDINAG---CGG-IDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLAL 123 + ++ L T P G C D +G+FS+I+ +++ +KQ+ NA+ Y + + Sbjct: 58 IDDITLGHFTPPTCKLGGLPCNAHFDLRMGAFSYISSKEMMESMKQMAQNASVYGGIMLV 117 Query: 124 QTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGL---FPRTQVSQQKVCQDIAGE 180 +T P+ + +++ + +++ + +C+ I G F ++ ++++ ++G+ Sbjct: 118 KTMCPQCENLMTWIESVGRNVSDILNVNCERMMAPITGAMDKFAKSAEAKRQADLYLSGK 177 Query: 181 SNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKE 240 S D A Q SD V + K ++ +N N++W ALSK G ELKE Sbjct: 178 SK---DSAEIVQKAKKDSDSDPVTHNP--ELKTQLGENFNLVWKALSKTASQTGTTELKE 232 Query: 241 FVMTLTGSLVFGPNGEITPLSARTTDRSIIRAMM-----EGGTAKISHCNDSDKCLKVVA 295 +M+++G++V G + + ++ +I M G + CN+ CL Sbjct: 233 LLMSISGTIVIQ-KGLPPKIYSSLAEQELIEQYMGVSNKSSGQITLYVCNEDKLCLNPTK 291 Query: 296 DTPVTISRDNALKSQITKLLASIQNKAVSDT---PLDDKEKGFISSTTIPVF-KYLVDPQ 351 T + L S+++ LL S+ +K D ++EK I +++P+ K +D Sbjct: 292 QQK-TFTSSETLHSKLSTLLESMTDKIYKDKDNPDFTEEEKDLIDLSSLPLIPKIEMDLA 350 Query: 352 MLGVSNSMIYQLTDYIG---YDILLQYIQELIQQARAMVATGNY----DEAVIGHINDNM 404 + S ++ + D+I YD++ ++ +L+++ V +Y D + +N Sbjct: 351 IFKSSQNISVKSHDFITHLCYDVVTSHLAKLLKKTSDAVEELSYVQISDTGIFEQFANNA 410 Query: 405 NDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQ 437 + R I+ +S+ + D ++ + + +RQ Sbjct: 411 REIMRSISRAKSEAYKRYD---LISQMKARLRQ 440 >UniRef50_D2U124 Conjugative transfer pilus assembly protein TraH (Fragment) n=1 Tax=Arsenophonus nasoniae RepID=D2U124_9ENTR Length = 429 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 143/300 (47%), Gaps = 24/300 (8%) Query: 9 LVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV 68 L+L L T + + ++NS +N+ F G SN+T G +Q GG R Q+ Sbjct: 8 LMLVVILATPSITYADNINSQLNEMF---GSMSNSTGSGSYQSVTRDGYIGGGFVVRNQL 64 Query: 69 KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVP 128 + + I+++ P I+AGC GID + GSFSFIN ++ + ++ I +N+ G F LA+ Sbjct: 65 RTISPINISTPKISAGCSGIDFFSGSFSFINADEFVQLLRNIAANSVGLAFQLAINAMDS 124 Query: 129 EIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPR-TQVSQQKVCQDIAGESNIFADW 187 + LQ + +N + +SCQ ++GI+ + ++ ++ V +A E I + Sbjct: 125 VLGGEISKLQALIQKLNEYSANSCQLSKGILVDMASAFSENAKTAVGNTLASEGIIDSIE 184 Query: 188 AASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSK---NRMFDGNK-ELKEFVM 243 + + + G+ V+ T N+MW AL++ N F G++ E KE VM Sbjct: 185 SIASEPM---GRKPVVQTAEKAGKITPCTHYGNLMWCALNRGGFNSNFMGSEIEQKELVM 241 Query: 244 TLTGSLVF-----GPNGEI-------TPLSARTTDRSIIRAMMEGGTAKISHC-NDSDKC 290 ++ G ++ +GE+ TP+ S+++ + +I C +D+D C Sbjct: 242 SMVGMVIVEKPTKNTSGEMPFNHTVATPIPMNEIYDSLMKGTKDNPNFRIYGCGSDTDIC 301 >UniRef50_Q19ND6 Pilus assembly protein n=8 Tax=Enterobacteriaceae RepID=Q19ND6_ECOK1 Length = 492 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 155/355 (43%), Gaps = 29/355 (8%) Query: 9 LVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV 68 L +CAA+L P A+AD + M FN + +T P + GGS+ RT Sbjct: 37 LSVCAAILA--PTANAD--NAMRNIFNGM---MTSTSPATFSTATRTGIVGGSMSYRTTN 89 Query: 69 KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVP 128 N L+SM+ P + GC GID +LGSFS ING+QL + + I AA Y F++A+ Sbjct: 90 VNTNLVSMSFPKASVGCNGIDVFLGSFSMINGDQLVQVARGIAQGAAIYAFNVAVSAICA 149 Query: 129 EIKTAKDFLQKMASDINSMNLSSCQAAQGIIG---GLFPRTQVSQQKVCQDIAGESN-IF 184 + + +Q +N SC A + G + S I G N + Sbjct: 150 DCAATINDIQNKLQALNKFAKDSCNATYSFLSENVGTPSQFANSVSSGPASILGSINGLI 209 Query: 185 ADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIM-WNALSKNRMFDG------NKE 237 D+ +S S V+ K ++ E+ + N+ M + + K M G + Sbjct: 210 PDFGSSMTKSPEAVTSQ-VKAKDPEEFAEKFSGNLFYMSFMDIDKGTMNIGGVTELSGYK 268 Query: 238 LKEFVMTLTGSLV--FGPNGEITPLSARTTDRSIIRAMM---EGGTAKISHCN-----DS 287 L E +M+L G+++ + GE + R + ++ +M GG+ K+ C+ S Sbjct: 269 LAEQLMSLVGTVIINWDSKGEKAGMEVRPSTMTVTDYIMGPPAGGSIKMLKCSPAPDPSS 328 Query: 288 DKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIP 342 + + + + V LK I+ LL ++Q K ++D + D E IS IP Sbjct: 329 PRKAQCLVMSEVNDGGFKGLKDTISDLLLNVQKKIINDVRVSDDELRIISYIGIP 383 >UniRef50_Q5NX61 Sex pilus assembly protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX61_AZOSE Length = 474 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 99/433 (22%), Positives = 187/433 (43%), Gaps = 63/433 (14%) Query: 2 MPRIK-PLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 MP IK L + +L T+ A + ++ G N T P +Q Q GG Sbjct: 1 MPNIKIAALAVGLSLYTMMTPTHASLGGALD------GMLINVTDPVAYQSQTRRGFVGG 54 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 ++ R+ ++NV ++S P ++AGCGGID + GSFSFI+ +QL + I NA G F Sbjct: 55 NVAMRSPIRNVNIVSFDPPRMSAGCGGIDLFAGSFSFIDSDQLIAVFRSIAQNALGLIFM 114 Query: 121 LALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGE 180 AL P++++ +Q +N ++ ++C A+ + +F + Sbjct: 115 RALAAIDPKLQSLVSTIQSKLQSLNQLSSNTCAIAKQAVDTVFNSVE------------R 162 Query: 181 SNIFADWAASRQGCTVGGKSDSVRD----KASDKDKERVTKNI-------NIMWNALSKN 229 ++ A+ A+ GG D KAS K K + N++W+ ++ N Sbjct: 163 ASTSAESGAAFFEAIAGGVGDLFESQEAVKASPKAKIKQACEAGSIEFCGNVVWDLMADN 222 Query: 230 RM--------FDG--NKELKEFVMTLTGSLVF----GPNGEITPLSARTTDRSIIRAMME 275 R+ F G K E VMT+TG+ ++ P+ TP A+ + + + Sbjct: 223 RVGELLGGGYFAGLSTKYAAELVMTMTGTAIYDPESAPSASETPRMAQRPGKIDLHDLKT 282 Query: 276 G---GTAKISH-CNDS---DKCL---KVVADTPVTISRDNAL--------KSQITKLLAS 317 G G KI + C+ + D C +V D T+ N + + ++ Sbjct: 283 GRSSGAQKIKYSCSSAPARDGCRSMDEVAWDWEGTVGYTNRMLFGSIDGTSTTADSIVGK 342 Query: 318 IQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQ-MLGVSNSMIYQLTDYIGYDILLQYI 376 + D L ++ F+++T++P +++ Q G ++++ Q I ++ + Sbjct: 343 MSPACAVDCTLSATQQSFVNATSVPFISMMLEVQSQEGAASAVAAQAAPLIAEELHIVLS 402 Query: 377 QELIQQARAMVAT 389 + +++ AR +++T Sbjct: 403 EAVLRAARQVLST 415 >UniRef50_A7H3H2 Putative TraG n=1 Tax=Campylobacter jejuni subsp. doylei 269.97 RepID=A7H3H2_CAMJD Length = 488 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 8/155 (5%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFF-NKLGFASNTTQPGVWQGQAAGYAYG 59 + R+ + CA LL P+A +N++++ F N LG + + G ++ Q +G+ G Sbjct: 4 LKKRVVISAIACAFLL---PSA---LNANLSSFIQNNLGSSITSENSGYYKSQVSGFISG 57 Query: 60 GSLYAR-TQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYF 118 GS R + ++ S+T P N GC GID G FS++N E L + +K+I S A Y Sbjct: 58 GSSRIRWGGGETIRPFSVTAPSFNVGCSGIDMIFGGFSYLNFEYLVKKLKKIASAAPSYA 117 Query: 119 FDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQ 153 F +AL T + +T D L+K+A+ INSMN +CQ Sbjct: 118 FQMALSTLCKDCQTIMDELEKIANAINSMNFDTCQ 152 >UniRef50_Q74BB6 Conserved domain protein n=3 Tax=Desulfuromonadales RepID=Q74BB6_GEOSL Length = 494 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%) Query: 42 NTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGE 101 ++T P ++G GY GGS AR + L + +LP + +GCGGID +LG FSF+N + Sbjct: 38 SSTSPSYYEGSKRGYYTGGSFSARWANTDDHLFTASLPKLKSGCGGIDMFLGGFSFLNVD 97 Query: 102 QLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGII 159 L + ++ I+S A FD+AL+T P++ L+ + +NS+ L+ C+AA+ ++ Sbjct: 98 YLVQKLQNILSAAPAAAFDIALKTLAPQVADTIKTLEAITDRLNSLQLNDCKAAKALV 155 >UniRef50_A9AU08 TraH family protein n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AU08_BURM1 Length = 493 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 6/156 (3%) Query: 4 RIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLY 63 R+K L L A++ V A A + +D+ +N+T PG + + G+ Sbjct: 2 RVKKFL-LIVAMVVVPHLAFAGILADLGSMV-----MANSTAPGAMTTKDRVGVFMGAFT 55 Query: 64 ARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLAL 123 R+ +K V L++ P I+AGCGGID Y GSFSFIN +QL + +Q+ ++AAG F A+ Sbjct: 56 MRSPIKAVNLVTFDPPRIDAGCGGIDLYGGSFSFINSQQLIQIFRQVAADAAGLAFKAAI 115 Query: 124 QTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGII 159 ++ P + Q + ++N++ +SCQ A I+ Sbjct: 116 KSISPSLDALITEFQTLLQNLNNLAKNSCQMAHLIV 151 >UniRef50_Q2LU06 Pilus assembly protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU06_SYNAS Length = 488 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 44 TQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQL 103 T PG ++GQ GY GGS AR Q N L + P + AGCGGID +LG FS++N E L Sbjct: 45 TSPGYFEGQKRGYFTGGSFSARWQQGNDYLFTAMPPKVKAGCGGIDVFLGGFSYLNFEYL 104 Query: 104 QRFVKQIMSNAAGYFFDLALQTTV-PEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGL 162 +++IM A FD+AL P KT K L+ + + +N++ L C+A + ++ + Sbjct: 105 VTKLQRIMQAAPAAAFDIALNVLCEPCSKTIKS-LEAITNTLNNLQLDECKAGRALVATM 163 Query: 163 FP 164 P Sbjct: 164 VP 165 >UniRef50_B7J815 Pilus assembly protein TraH, putative n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J815_ACIF2 Length = 559 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 9/165 (5%) Query: 3 PRIKPLL--VLCAALLTVTPAASADVNSD---MNQFFNKLGFASNTTQPGVWQGQAAGYA 57 P +K + VL A L +V + + S M F N++ AS+ G G Sbjct: 6 PELKKITKGVLVATLTSVLTSGFLNAESQALGMQNFVNQMFIASSGATAA---GSGNGVT 62 Query: 58 Y-GGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAG 116 Y GG ART + +I+ + PDI+AGCGGI+ + GSF FING++ +++I A G Sbjct: 63 YSGGYFEARTPLSGANVIAFSPPDISAGCGGINLFFGSFHFINGQEFMALLREIGQQALG 122 Query: 117 YFFDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGG 161 Y F LA+ + ++K D+N+ ++CQ A+GI G Sbjct: 123 YAFQLAIDAMCHQCGALLSMIEKDIQDMNNALKNTCQLAKGIFNG 167 >UniRef50_A2SNL1 Sex pilus assembly protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNL1_METPP Length = 481 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 2/122 (1%) Query: 39 FASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFI 98 F SN+T P + Q+ G GGS+ RT V+N+ L++ P + AGCGGID + GSFSFI Sbjct: 35 FMSNSTAPQAFSSQSRGGFVGGSVAMRTPVRNINLVAFDPPRLAAGCGGIDMFGGSFSFI 94 Query: 99 NGEQLQRFVKQIMSNAAGYFFDLALQTTVPEI-KTAKDFLQKMASDINSMNLSSCQAAQG 157 N +QL +QI +N+ G F A+ P + K ++F KM + +N ++C A Sbjct: 95 NADQLVALFRQIAANSVGLAFKAAIDYINPALGKQMQEFQAKMQA-LNENMRNTCAIANQ 153 Query: 158 II 159 ++ Sbjct: 154 VV 155 >UniRef50_A0R7T1 Putative uncharacterized protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7T1_PELPD Length = 495 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 84/152 (55%), Gaps = 3/152 (1%) Query: 43 TTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQ 102 + P +QG GY GGS A + N L++++ P I +GCGGID ++G F+F++ + Sbjct: 40 SASPSSFQGATRGYYTGGSFQAHWKDSNDYLMTVSTPHIKSGCGGIDTFMGGFAFMDVDY 99 Query: 103 LQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGL 162 L + +++IMS A FD+AL+ P+I L A +N++ L C+A++ ++ + Sbjct: 100 LVQKLQRIMSAAPAAAFDIALKAVSPQISGTLKELGAWADALNNLQLDDCKASKALVATI 159 Query: 163 F-PRTQVSQQKVCQDIAGESNIFADWAASRQG 193 P + + +K+ +++ + F W +S G Sbjct: 160 ASPASNLLGEKMQSELSSAQSDF--WTSSGMG 189 >UniRef50_Q4HPA7 Putative uncharacterized protein n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HPA7_CAMUP Length = 468 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 86/321 (26%), Positives = 139/321 (43%), Gaps = 26/321 (8%) Query: 47 GVWQGQAAG-YAYGGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQR 105 G ++ QA G Y+ G + V ++ P I+AGCGGID G FS++N E + Sbjct: 38 GYYKTQARGLYSLGSARVRFGGGSTVVPFNVRAPSISAGCGGIDMVFGGFSYLNFEFIVE 97 Query: 106 FVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIG-GLFP 164 +K+I S A + F++AL T + +T L+K+A+ INSMN +CQ +Q + G Sbjct: 98 KLKKIASAAPAFAFNIALSTLCKDCQTIMSELEKIANTINSMNFDTCQISQSSVNWGARQ 157 Query: 165 RTQVSQQKVCQDIAGESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWN 224 V + Q + D S+ VG ++S+ + +D + T +M Sbjct: 158 LGIVKNSNLAQGVDDSWLKIGDKMPSQ---IVGDFTNSMNNLFNDGGE---TVKEYLMQG 211 Query: 225 ALSK------NRMFDGNKELKEFVMTLTGSL----VFGPNGEI-TPLS-----ARTTDRS 268 +L K N + KE + L G + V G N + P S + R Sbjct: 212 SLLKKTMEVYNPIISSGKEFEYLTRALIGDVVGETVEGSNPKTQEPFSLKVYVGKLDIRD 271 Query: 269 IIRAMMEGGTAKISHCNDSDK--CLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDT 326 ++ GG K S ++ +K V + I D LK I + I N V++ Sbjct: 272 FKEVLLNGGEVKGSKVEYTENGGTVKDVRFSDENIKFDKGLKYIIKDKITEIYNAMVANR 331 Query: 327 PLDDKEKGFISSTTIPVFKYL 347 L + FI+S IP+++ L Sbjct: 332 SLSADQLKFINSVPIPLYRIL 352 >UniRef50_C1SHD2 Conjugative relaxosome accessory transposon protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHD2_9BACT Length = 453 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 8/150 (5%) Query: 10 VLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVK 69 VL AL+ +TP A A+ D +F+ A+++ V+ Q G+A GS R + K Sbjct: 7 VLLIALI-MTPLAHANWVDD---WFD----ANSSANASVYISQERGFATMGSFQGRLKTK 58 Query: 70 NVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPE 129 + L+++ P ++ GCGGID ++G FSF+N + L ++I+ A FDLAL Sbjct: 59 SDYLMTVAPPKLSVGCGGIDIFMGGFSFLNPDYLVDKAERILRAAPYVAFDLALNEFCTS 118 Query: 130 IKTAKDFLQKMASDINSMNLSSCQAAQGII 159 KD + + + +N + + C+AA+G++ Sbjct: 119 CSAIKDRAENIINALNGLQIDECKAAKGLV 148 >UniRef50_Q1NGS0 Putative uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGS0_9SPHN Length = 523 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 5/154 (3%) Query: 7 PLLVLCAALLTV-TPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYAR 65 P+L A L T AA A S +F+ + + T PG ++ Q GY G + R Sbjct: 57 PVLSAIALLSTCGLTAAPAHAQSWAEHWFDNVTY----TSPGSFEDQTRGYVTAGGMSGR 112 Query: 66 TQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQT 125 V + L S+TLP + AGCGGID +LG SF++ + L + ++ I+ A F L+T Sbjct: 113 IDVHSDYLTSLTLPKVKAGCGGIDMFLGGMSFLDPDYLVQKLESILQAAPAVAFQYLLET 172 Query: 126 TVPEIKTAKDFLQKMASDINSMNLSSCQAAQGII 159 ++ ++ + +NS+ ++ C+ A ++ Sbjct: 173 LDEKMGNIISKMEAATNFLNSIQVNDCRLANRMV 206 >UniRef50_C4S402 Pilus assembly protein n=2 Tax=Yersinia RepID=C4S402_YERBE Length = 462 Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 7/157 (4%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 M IK +++L L +T AA+AD +D ++F+ + + P ++ Q GY G Sbjct: 1 MINIKKIVILTLTSLYIT-AANADNWAD--KWFDNAVYDT----PSSFESQKRGYYTMGG 53 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 AR I+++ P ++ GCGGIDA+LG FSF++ + L ++ M A FD+ Sbjct: 54 FSARNNSSTDYPITISPPKLSVGCGGIDAFLGGFSFLDPDYLVEKAQRAMQAAPYVAFDM 113 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGI 158 AL+T E ++++ + +N + L+ C A+ I Sbjct: 114 ALKTMCKECADTLGKIEQITNFLNGIQLNECALAKPI 150 >UniRef50_C5F065 Pilus assembly protein n=2 Tax=Helicobacter pullorum MIT 98-5489 RepID=C5F065_9HELI Length = 489 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 9/148 (6%) Query: 10 VLCAALLTVTPAASADVNSDMNQFF-NKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV 68 V+ AA+L+ T AS ++ F N L A G ++ QA G GS R Sbjct: 13 VVLAAMLSNTANAS------LSDFVSNSLDTAVLNQNAGYFKSQAGGLMSLGSSRIRFGG 66 Query: 69 KNVQLISMTL--PDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTT 126 N + P +N GC GID G FS++N + + +K+I + A + F +AL T Sbjct: 67 NNGAFTPFNVQAPSLNIGCSGIDMVFGGFSYLNFDNIVEKLKKITTAAPAFAFKIALSTL 126 Query: 127 VPEIKTAKDFLQKMASDINSMNLSSCQA 154 + T L+K+A+ IN MN +C A Sbjct: 127 CKDCDTIMTELEKIANAINGMNFDTCTA 154 >UniRef50_A0L355 Putative uncharacterized protein n=1 Tax=Shewanella sp. ANA-3 RepID=A0L355_SHESA Length = 464 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 16/141 (11%) Query: 10 VLCAALLTVTPAASADVNSDMNQFFNKLGFASN--TTQPGVWQGQAAGYAYGGSLYARTQ 67 +LC L SA S +N ++++ AS+ T+ G + G++ G S R + Sbjct: 9 LLCCPL-------SATAASGLNNLWDQMLSASSGATSYSG---AKRDGFSLG-SASVRIK 57 Query: 68 VKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTV 127 N +++++ P + + C GID + GS S I E+L + + I + A Y F LA+ Sbjct: 58 TTNEKIVAVRAPYLQSSCKGIDFFGGSLSIIKREELVQMARSIAAAAPMYAFQLAMGMLC 117 Query: 128 PEIKTAKDFLQKMASDINSMN 148 P+ L +A +N++N Sbjct: 118 PDCNA---ILADLAKRLNALN 135 >UniRef50_Q893U0 Flagellar cap protein fliD n=1 Tax=Clostridium tetani RepID=Q893U0_CLOTE Length = 556 Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust. Identities = 42/195 (21%), Positives = 85/195 (43%), Gaps = 34/195 (17%) Query: 118 FFDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFP------------- 164 +FD+ + ++ K DF AS ++ + + A QG I G++ Sbjct: 68 YFDITKKDSLNSGKAFYDF----ASKSSNEGIITASAGQGAIEGIYKVKVNKLAKGAQAY 123 Query: 165 ---RTQVSQQKVCQDIAGESNIFADWAASR---------QGCTVGGKSDSVRDKASDKDK 212 T V+ +D+ E+ F + + TVG S+++ + K Sbjct: 124 KQLGTDVTNSNKLKDLGIETKDFTITVDGKDFKVKLDKGEDSTVGDLVSSIKNATTADGK 183 Query: 213 ERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTGSLVFGPNGEITPLSARTTDRSIIRA 272 E+++K +N+ ++ +SK + + + KE +M++TG +FG T SA+ D I Sbjct: 184 EKLSKYVNVSFSEISKRMVIETKETGKEQIMSITGGSIFG-----TDFSAKGEDAEIQVI 238 Query: 273 MMEGGTAKISHCNDS 287 +GGT +++ ++ Sbjct: 239 TPDGGTGTVNNAKNN 253 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B6ICG8 TraH protein n=2 Tax=Enterobacteriaceae RepID=B6... 478 e-133 UniRef50_A4WGU0 TraH family protein n=2 Tax=Enterobacteriaceae R... 465 e-129 UniRef50_A7ZGS3 TraH protein n=4 Tax=Enterobacteriaceae RepID=A7... 442 e-122 UniRef50_A3VN11 TraH n=1 Tax=Parvularcula bermudensis HTCC2503 R... 429 e-118 UniRef50_A9L6A2 TraH family protein n=12 Tax=Gammaproteobacteria... 418 e-115 UniRef50_Q2NDI0 Pilus assembly protein n=6 Tax=Sphingomonadales ... 403 e-111 UniRef50_Q5ZTT1 TraH n=1 Tax=Legionella pneumophila subsp. pneum... 403 e-111 UniRef50_D1RMN0 TraH pilus assembly protein n=2 Tax=Legionella R... 401 e-110 UniRef50_D0Z585 IncF plasmid conjugative transfer pilus assembly... 399 e-109 UniRef50_A8QYR4 TraH protein n=2 Tax=Legionellaceae RepID=A8QYR4... 397 e-109 UniRef50_A5KZG8 Putative uncharacterized protein n=1 Tax=Vibrion... 396 e-109 UniRef50_Q3IUV3 TraH n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID... 391 e-107 UniRef50_C9NPT8 IncF plasmid conjugative transfer pilus assembly... 388 e-106 UniRef50_C5SIL6 TraH family protein n=1 Tax=Asticcacaulis excent... 386 e-106 UniRef50_A5VGS4 TraH family protein n=5 Tax=cellular organisms R... 374 e-102 UniRef50_Q6MB86 Putative F pilus assembly protein traH n=1 Tax=C... 369 e-100 UniRef50_Q0F376 Putative uncharacterized protein n=1 Tax=Maripro... 362 2e-98 UniRef50_Q1N8Y9 Pilus assembly protein n=1 Tax=Sphingomonas sp. ... 361 3e-98 UniRef50_A0B4P9 TraH family protein n=5 Tax=Proteobacteria RepID... 344 4e-93 UniRef50_UPI00016AD114 TraH family protein n=1 Tax=Burkholderia ... 341 3e-92 UniRef50_A1W643 TraH family protein n=5 Tax=Betaproteobacteria R... 340 6e-92 UniRef50_B4EQN3 Putative TraH conjugative transfer protein n=1 T... 335 2e-90 UniRef50_A1RH72 TraH family protein n=16 Tax=Gammaproteobacteria... 323 9e-87 UniRef50_Q1MY31 TraH n=1 Tax=Bermanella marisrubri RepID=Q1MY31_... 312 2e-83 UniRef50_D0SGX6 TraH family protein n=1 Tax=Acinetobacter johnso... 304 4e-81 UniRef50_C4Z010 Putative uncharacterized protein n=1 Tax=Rickett... 300 5e-80 UniRef50_C4NV64 TraH n=17 Tax=Gammaproteobacteria RepID=C4NV64_E... 296 1e-78 UniRef50_Q1RJF7 F pilus assembly protein TraH n=31 Tax=Rickettsi... 295 3e-78 UniRef50_B4RLQ8 TraH n=13 Tax=Neisseria RepID=B4RLQ8_NEIG2 277 8e-73 UniRef50_Q5NX61 Sex pilus assembly protein n=1 Tax=Aromatoleum a... 261 3e-68 UniRef50_Q8L263 Pilus biogenesis protein n=2 Tax=Enterobacteriac... 260 6e-68 UniRef50_B7XGS6 Putative pilus assembly protein n=2 Tax=Pseudomo... 255 4e-66 UniRef50_Q4HPA7 Putative uncharacterized protein n=1 Tax=Campylo... 253 9e-66 UniRef50_D2U124 Conjugative transfer pilus assembly protein TraH... 243 1e-62 UniRef50_Q19ND6 Pilus assembly protein n=8 Tax=Enterobacteriacea... 240 1e-61 UniRef50_A4JTN5 TraH family protein n=1 Tax=Burkholderia vietnam... 227 7e-58 UniRef50_A2SNL1 Sex pilus assembly protein n=1 Tax=Methylibium p... 222 2e-56 UniRef50_C4S402 Pilus assembly protein n=2 Tax=Yersinia RepID=C4... 204 5e-51 UniRef50_Q2LU06 Pilus assembly protein n=1 Tax=Syntrophus acidit... 199 2e-49 UniRef50_A7H3H2 Putative TraG n=1 Tax=Campylobacter jejuni subsp... 197 8e-49 UniRef50_Q1NGS0 Putative uncharacterized protein n=1 Tax=Sphingo... 197 9e-49 UniRef50_C1SHD2 Conjugative relaxosome accessory transposon prot... 192 2e-47 UniRef50_A0R7T1 Putative uncharacterized protein n=1 Tax=Pelobac... 186 1e-45 UniRef50_Q74BB6 Conserved domain protein n=3 Tax=Desulfuromonada... 184 4e-45 UniRef50_C5F065 Pilus assembly protein n=2 Tax=Helicobacter pull... 175 2e-42 UniRef50_A9AU08 TraH family protein n=1 Tax=Burkholderia multivo... 170 9e-41 UniRef50_B7J815 Pilus assembly protein TraH, putative n=1 Tax=Ac... 166 1e-39 UniRef50_A0L355 Putative uncharacterized protein n=1 Tax=Shewane... 142 2e-32 UniRef50_D2U4N5 Conjugal transfer pilus assembly protein n=1 Tax... 115 2e-24 Sequences not found previously or not previously below threshold: UniRef50_D1ZXJ6 Whole genome shotgun sequence assembly, contig_3... 124 7e-27 UniRef50_B2I402 TraH family protein n=1 Tax=Acinetobacter bauman... 121 4e-26 UniRef50_C0QUW1 Putative uncharacterized protein n=1 Tax=Perseph... 97 2e-18 UniRef50_Q893U0 Flagellar cap protein fliD n=1 Tax=Clostridium t... 46 0.003 UniRef50_A4V6R7 Putative exported protein n=2 Tax=Pseudomonas Re... 44 0.011 UniRef50_B3CSC5 Putative conjugative transfer protein TraH n=2 T... 42 0.031 >UniRef50_B6ICG8 TraH protein n=2 Tax=Enterobacteriaceae RepID=B6ICG8_ECOSE Length = 468 Score = 478 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 234/449 (52%), Positives = 327/449 (72%), Gaps = 2/449 (0%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 ++ + + C + A ADVN+D+N+FFNKLGF N T+ VWQGQAAGYA GG+L+ Sbjct: 9 LRRVTLSCLVAAVLALPAQADVNNDLNKFFNKLGFEGNATRAAVWQGQAAGYATGGNLFL 68 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R QV N+Q+ S T P I AGCGGIDAYLGSFSFIN EQ++RFVKQ+M NA GYFFDLALQ Sbjct: 69 RNQVNNLQIASFTPPHITAGCGGIDAYLGSFSFINSEQIERFVKQLMGNAVGYFFDLALQ 128 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIF 184 T VP +K+ KDF+QK+AS++N+MN+SSCQAAQGIIGGL+P+ V QK+CQDIAGE+N+F Sbjct: 129 TAVPGMKSVKDFMQKLASELNNMNISSCQAAQGIIGGLWPKNTVQSQKICQDIAGETNMF 188 Query: 185 ADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMT 244 +DWAASRQGCTVGG+ + V DKA + K++V +N N+MW L KN M +GN EL E VM Sbjct: 189 SDWAASRQGCTVGGQMNKVLDKAPENMKDQVMRNKNLMWEILKKNDMMNGNTELMELVMN 248 Query: 245 LTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTISRD 304 +TG+L+F GEI + + + +IRA+M GG A I C + CLK + VT+S++ Sbjct: 249 VTGTLIFDDKGEIQFIGPQANHQGLIRALMYGGQATIFGCTSTGDCLK-TRNRTVTVSQN 307 Query: 305 NALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLT 364 N+L ++ ++ +I +K VSD PL +EKGFI ST++P+ +YLVDPQML +S + L+ Sbjct: 308 NSLNQRVQNMIKNISDKLVSDDPLTSQEKGFIESTSVPILRYLVDPQMLNIS-TFYPSLS 366 Query: 365 DYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQDA 424 DYI YDILLQY+ EL+ QAR + N+ E + + +N ++A+RQ+ Q+QV V+ + Sbjct: 367 DYIAYDILLQYLNELLSQARVQAGSKNFPEEQMKMLRENFSEASRQLEGLQAQVDVKANT 426 Query: 425 LLVVDRQMSYMRQQLSARMLSRYQNNYHF 453 L+ ++++M Y+RQQ+S +++SRY+ N ++ Sbjct: 427 LMELEQRMGYLRQQVSTQLMSRYEQNLNY 455 >UniRef50_A4WGU0 TraH family protein n=2 Tax=Enterobacteriaceae RepID=A4WGU0_ENT38 Length = 454 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 242/453 (53%), Positives = 328/453 (72%), Gaps = 4/453 (0%) Query: 5 IKPLLVLCAALLTVTPAA---SADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 + L+ A++ AA ADVN D+N FF LG++ N +Q WQGQAAGY GGS Sbjct: 1 MVKSLITAASIFMTGMAALPAQADVNGDLNGFFGSLGYSGNVSQAQAWQGQAAGYYSGGS 60 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 +Y R VKNVQLISM LP +NAGCGGIDAYLGSFS I+GE++QRFVKQIMSNAAGY FDL Sbjct: 61 VYLRNPVKNVQLISMQLPSLNAGCGGIDAYLGSFSMISGEEIQRFVKQIMSNAAGYAFDL 120 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGES 181 ALQT VPE+K AKDFLQK+ASD+NSMN+SSCQAAQGIIGGL+P TQVSQQK+CQDIAGE+ Sbjct: 121 ALQTMVPELKQAKDFLQKLASDVNSMNMSSCQAAQGIIGGLWPVTQVSQQKICQDIAGET 180 Query: 182 NIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEF 241 N+F+DWA+SRQGCTVGG+S+ V DKA D K++V KN N++W+ LSKN + ++ LKE Sbjct: 181 NMFSDWASSRQGCTVGGQSNKVTDKAGDDQKDQVLKNKNLIWDTLSKNGLLGNDRALKEL 240 Query: 242 VMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTI 301 VM+ GS++F NG++T L+ +R +I+ +M GGTAK+ C+++ CL V +TI Sbjct: 241 VMSTVGSIIFNNNGDVTILTPLVDNRDLIKVLMRGGTAKVYGCDEATLCLGPVVK-DLTI 299 Query: 302 SRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIY 361 S NAL + + L+ S+QNK V DT L ++EKGF+++T++PV KYL + Q +G+S + + Sbjct: 300 SESNALVTLVKNLMLSMQNKLVDDTALSNQEKGFVNTTSVPVLKYLTNAQSMGMSATYLL 359 Query: 362 QLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQ 421 Q+ D+I D+++QY+QEL++QA +A N+ E + DN+ A +A + Q Sbjct: 360 QVADFIAQDLMIQYLQELVKQASLSLAGKNFPEEAAAKLRDNIIHAQGLLADMKLQSAAD 419 Query: 422 QDALLVVDRQMSYMRQQLSARMLSRYQNNYHFG 454 Q+AL +DR M Y++QQ+S + YQ+NYH+G Sbjct: 420 QNALDGIDRNMQYLQQQVSTIVSGSYQSNYHWG 452 >UniRef50_A7ZGS3 TraH protein n=4 Tax=Enterobacteriaceae RepID=A7ZGS3_ECO24 Length = 501 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 219/453 (48%), Positives = 315/453 (69%), Gaps = 2/453 (0%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 M ++ + + +ASA + DMN FFN + +ASN T WQGQAA Y GG Sbjct: 47 MKTFLRQSFLSLLIGTALCTSASAGLQDDMNSFFNNMSYASNATSAKAWQGQAARYVTGG 106 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 S YART KN+QLIS++LP INAGCGGID YLGSFSFIN +Q+ FVKQ M+NAAGYFFD Sbjct: 107 SFYARTGNKNIQLISISLPSINAGCGGIDVYLGSFSFINSDQIMAFVKQTMANAAGYFFD 166 Query: 121 LALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGE 180 LAL+TTVPE+K AKDFLQKMA+D+N N+SSCQAA+ ++ + SQQ VCQ +AG+ Sbjct: 167 LALETTVPELKAAKDFLQKMAADLNRFNMSSCQAAKAMVDSVASLWGESQQNVCQSVAGQ 226 Query: 181 SNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKE 240 +N+F+DW +SRQGCT GGK +SV +KA+ +K++V K+IN+MW+ALS N N EL++ Sbjct: 227 NNVFSDWVSSRQGCTSGGKYESVTNKATGAEKDQVLKDINLMWDALS-NSTLSSNAELRQ 285 Query: 241 FVMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVT 300 F M+++GS++FG NGE+ LS+ +DRS++ AMM GG+AK+ C++ +KCL VT Sbjct: 286 FAMSISGSVIFGSNGEMRILSSLASDRSLLSAMMSGGSAKVYVCDNQNKCLSPSL-NNVT 344 Query: 301 ISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMI 360 IS +L + L SI+NKA++DTPL ++EK FI+ST+IP+ ++VD L VS S+ Sbjct: 345 ISESKSLIRMVRDTLTSIENKAITDTPLTEREKQFINSTSIPILSWIVDQSSLSVSQSLF 404 Query: 361 YQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQV 420 QLTDYI DI LQY++ +++ +AT +Y A + + + + DA + + + + +VQ+ Sbjct: 405 AQLTDYIAVDIYLQYLEAVMKVVNGSLATKDYPGANMNELKNGLADARQALNSLRMEVQI 464 Query: 421 QQDALLVVDRQMSYMRQQLSARMLSRYQNNYHF 453 +++AL+ +Q+ ++RQQ+S++M R NY F Sbjct: 465 KENALISAQQQIRFIRQQVSSKMSDRVLGNYQF 497 >UniRef50_A3VN11 TraH n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN11_9PROT Length = 472 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 138/468 (29%), Positives = 247/468 (52%), Gaps = 18/468 (3%) Query: 2 MPRIKPLLVLCAAL---LTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAY 58 M R L A+ L++ +A+ADVN++MNQF+N LG A+N T P ++GQ AGY Sbjct: 1 MRRFLKLPAAVASFVYGLSMPTSAAADVNAEMNQFWNDLGVAANVTGPSSFEGQRAGYYT 60 Query: 59 GGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYF 118 G++Y RT +++ +++ +P AGCGGID Y G FS++N +L F+K + +NAA + Sbjct: 61 FGNVYVRTPQRSLSPVNIQMPGYRAGCGGIDIYGGGFSYVNSAELVAFMKSVANNAASFA 120 Query: 119 FDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIA 178 F +AL+T P I LQ +A IN M ++SC++ Q + ++P++ + + +C+ A Sbjct: 121 FQVALETISPVIAEKVGELQSVAQRINQMAINSCESGQLAVAAVWPQSDQASRVICEASA 180 Query: 179 GESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKEL 238 ++ DW A+R GC G+ +V AS ++K + +NINI W+AL K+ + G++EL Sbjct: 181 SRRGLYPDWVAARHGCGSEGERSNVLAGASVEEKASIPQNINIAWDALKKHPVISGDREL 240 Query: 239 KEFVMTLTGSLVF------GPNGEITPLSARTTDRSIIRAMMEGGTAKISHC--NDSDKC 290 +F+MTL+G+ + L ++ D +I A ++GGT I C + D C Sbjct: 241 MQFLMTLSGTEILTAGADDDAAQSYQFLPSKMLDPGVISAFLDGGTIDIYECETDPDDLC 300 Query: 291 LKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDP 350 L VTI+ + L+++++++LA I K + T L E+ F++ T++PV+K + Sbjct: 301 LAPTTGGSVTIASSDGLRARVSQMLADIMGKVRTRTALTADEQAFLNVTSLPVYKMINVH 360 Query: 351 QMLG--VSNSMIYQLTDYIGYDILLQYIQ---ELIQQARAMVATGNYDEAVIGHINDNMN 405 ++ I + I D+L + E++ +A + +G D V + + Sbjct: 361 AAYEGVFADQTIQSYAEIIAIDLLYGLFEGYAEMLSEAGSTATSGARDSVVA--WKEQLT 418 Query: 406 DATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHF 453 + +Q + + + + V + + +QL+ R+ + Y F Sbjct: 419 RQREFLLQYQLENNARVEVIEQVIARTQAIERQLAGRLSKDLADAYQF 466 >UniRef50_A9L6A2 TraH family protein n=12 Tax=Gammaproteobacteria RepID=A9L6A2_SHEB9 Length = 462 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 144/455 (31%), Positives = 248/455 (54%), Gaps = 8/455 (1%) Query: 6 KPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYAR 65 + LL + + L T A SA V+ +N FFN LG+ +N T PG ++GQ+A Y GG+L+ R Sbjct: 8 RTLLGVTISCLLTTHAHSAGVSGSLNDFFNGLGYGTNVTNPGSFKGQSANYYSGGNLFVR 67 Query: 66 TQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQT 125 + +++ QL+S+ +P I AGCGGID ++G FS IN + L + K I++NAA + DLALQT Sbjct: 68 SPIRDAQLVSVQMPSIAAGCGGIDMFMGGFSHINSDALVQQGKAIIANAAPFAVDLALQT 127 Query: 126 TVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQK-VCQDIAGESNIF 184 P+IK KD L +A + +++SC++AQ + L V QK +C + ++N F Sbjct: 128 WAPQIKQIKDTLTAIADKYLNQSINSCESAQAGVSALAGFAGVGSQKYICATMGTQNNAF 187 Query: 185 ADWAASRQGCTVGGKSDSVRDKAS--DKDKERVTKNINIMWNALSKNRMFDGNKELKEFV 242 ADW + +Q C GG++++ D A K+ V KN NI+W A+ KN + L EF+ Sbjct: 188 ADWVSGQQECGAGGQANNQLDNAKKDPALKDMVRKNTNIVWAAILKNTFLASDPTLAEFL 247 Query: 243 MTLTGSLVFGPNGEITPLSARTTD-RSIIRAMMEGGTAKISHCNDS--DKCLKVVADTPV 299 M+++G+ ++ G + TD ++I +++EGG A+ C + D+CL T + Sbjct: 248 MSISGTYIYDATGNARGYGSLLTDNNNLINSLLEGGKAETYQCTNKAIDQCLAPTQQT-I 306 Query: 300 TISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSM 359 TI ++ L+ ++ LL I +K +D PL D +K + TT+P+ +L G++ Sbjct: 307 TIQSNHGLQYRVDTLLRGIASKMQNDQPLTDNDKSLLEYTTLPIMTFLRTELEAGLTP-Q 365 Query: 360 IYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQ 419 I + Y+Q ++ ++ + N D I I ++ +A R + ++ Q Sbjct: 366 TNTYAKIISVQFITLYLQNMLSIVKSSITATNNDPKDIDRIERDIINANRFLEGLTAKAQ 425 Query: 420 VQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFG 454 + + + Q ++QQ++ M ++ + N +FG Sbjct: 426 NEAVSQHQLIMQNQQIKQQITGAMSAKAKANLNFG 460 >UniRef50_Q2NDI0 Pilus assembly protein n=6 Tax=Sphingomonadales RepID=Q2NDI0_ERYLH Length = 478 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 117/469 (24%), Positives = 236/469 (50%), Gaps = 18/469 (3%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 M+ I+ + AA + +A+V M++F + +G A+N T P ++GQ+AGY G Sbjct: 1 MITSIRNAALTLAAASMIASPLAANVGDSMDRFMDDMGAAANVTGPTAFEGQSAGYYSLG 60 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 +++ R K + ++ LP AGCGGID + GSFSFIN ++ +K + +NA G+ F Sbjct: 61 NVWTRFPQKTTSIANLQLPRARAGCGGIDIFAGSFSFINASEMVALLKAVANNAVGFAFS 120 Query: 121 LALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGE 180 LA+ T PE + A +N+++++SC+ AQG++GGL+P+ ++ + +C+ I Sbjct: 121 LAIDTVCPECNKIMQEFSQKAQLMNNLSINSCEMAQGLVGGLWPKGDLADKAICEAIGNS 180 Query: 181 SNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVT-KNINIMWNALSKNRMFDG----N 235 IF D+AA++ GC G+ S + A + N W+ L K+ F+ + Sbjct: 181 EGIFTDYAAAKHGCGTRGQRASTNEGAGADYADVNPGVARNYTWHVLKKSAFFNPGGTFD 240 Query: 236 KELKEFVMTLTGSLVFGP-----NGEITPLSARTTDRSIIRAMMEGG---TAKISHCNDS 287 +EL E+ MTL G++++ P G+ P + + +++ A+++G T ++ C+++ Sbjct: 241 RELAEYAMTLIGTVIYVPPKDDEAGKFVPFAGDASS-TLVSALLDGTQGQTVRVFRCDET 299 Query: 288 DKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYL 347 D CL + ++++ A++ ++ L+ ++ + +DT + + EK + ++P++K L Sbjct: 300 DLCLNPTFEQ-MSLANAKAIRPRVALLIGNMVDAIRADTAIGNAEKELLQVASVPLYKIL 358 Query: 348 VDPQML--GVSNSMIYQLTDYIGYDILLQYIQELIQQA-RAMVATGNYDEAVIGHINDNM 404 G+ L + D+L + ++ +A R+M + DEA + + Sbjct: 359 TVQAAYGRGMPTDDRDTLAEIASIDLLYAILDRIVSEAGRSMASFIAADEAKLAIWRGQV 418 Query: 405 NDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHF 453 + + Q+ Q + A++ + + + + L+A M + Sbjct: 419 AEVRTGLVQRQATGQAKVSAIMQIIEKTAMIENALAASMSPSMSAALDW 467 >UniRef50_Q5ZTT1 TraH n=1 Tax=Legionella pneumophila subsp. pneumophila str. Philadelphia 1 RepID=Q5ZTT1_LEGPH Length = 461 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 144/458 (31%), Positives = 241/458 (52%), Gaps = 11/458 (2%) Query: 5 IKPLLVLCAAL--LTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSL 62 +K +L+ C + L + S + D+ +F L +N T+P +Q Q AG+ GG+L Sbjct: 1 MKKILLSCGLIGALGIGQVYSKSIGEDLTGYFKALNMGANVTEPHAYQAQRAGFYTGGNL 60 Query: 63 YARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLA 122 YAR+ V+N+Q++ ++ P ++AGCGGIDA LG FS I G++ F K I++N+ G F LA Sbjct: 61 YARSSVRNLQIMRLSWPKVSAGCGGIDATLGGFSHIKGKEFVDFTKNILNNSQGLAFQLA 120 Query: 123 LQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESN 182 L+ P + LQ +A+ +N N+SSC A+ + GL PRT+++QQ CQ I N Sbjct: 121 LEQATPLLGNVATKLQNVATWVNQTNISSCATAESAVLGLAPRTRIAQQHACQSIGQSKN 180 Query: 183 IFADWAASRQGCTVGGKS-DSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEF 241 +F+DWA +RQGC G + D R + E+V N N+ WNAL KN +F + EL + Sbjct: 181 LFSDWAEARQGCGKGSSNYDYDRVINENSSNEQVVDNTNVAWNALKKNGLFADDIELAQL 240 Query: 242 VMTLTGSLVFGPNGE---ITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTP 298 +MTL+G+L+ + E + LS+ ++ ++I A++ GG KI C++ KCL+ + Sbjct: 241 MMTLSGTLILTRDAEGVHVQRLSSLVSNNNLISALLRGGEVKIYQCDEKVKCLQPTLTSK 300 Query: 299 VTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNS 358 I + L+S++ L+ + +K + + KG I ST PV K V QM + +S Sbjct: 301 -NIDISHGLESKVRDLILDMASKIKDNVEQSEAAKGLIESTQYPVMKM-VSVQMAFMKDS 358 Query: 359 MI---YQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQ 415 + + ++ I DIL QY+ E +Q + Y EA++ ++ A R + + Sbjct: 359 AVIDTTRYSEAIAIDILFQYLNENLQLVKQAAGALQYPEAIMKEFQTDLTQARRDLVQME 418 Query: 416 SQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHF 453 + + + ++ + Q L S + + Sbjct: 419 GSAHQRMSMAMQMIQETQTIEQMLVGEFSSELTQSLSW 456 >UniRef50_D1RMN0 TraH pilus assembly protein n=2 Tax=Legionella RepID=D1RMN0_LEGLO Length = 466 Score = 401 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 142/447 (31%), Positives = 239/447 (53%), Gaps = 5/447 (1%) Query: 10 VLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVK 69 + A LL + A+ SD++ FFN LGF +N T +Q QAAGYA GS+YAR QV+ Sbjct: 15 TVAALLLLGSSQLFANAESDLSHFFNNLGFDANVTGSHAYQTQAAGYAALGSVYARNQVR 74 Query: 70 NVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPE 129 ++L + +P + +GCGGID + G FSFI +Q+ +F++ I+S AGY +LAL+T +PE Sbjct: 75 TIRLAHVDVPGMRSGCGGIDLFAGGFSFIKSDQIVKFMQNILSGGAGYALNLALETELPE 134 Query: 130 IKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWAA 189 I A F+QK+A++IN N +SC+ + + ++PR + +QQ++C+D+ F DWA Sbjct: 135 IAHAMQFMQKLANEINGTNFNSCEMGENLSAAVWPRNRAAQQRLCEDLGRHQGTFTDWAM 194 Query: 190 SRQGCTVGGKSDSVRDKASDKD--KERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTG 247 +RQ C+ GG +DS+ +A + K+RV N NI+W++L N+ + +L E M+++G Sbjct: 195 ARQKCSTGGDADSILSQAKNNPEYKDRVLINTNIVWDSLQINQFIAQDPKLAEVYMSISG 254 Query: 248 SLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDS---DKCLKVVADTPVTISRD 304 ++VF G + + T++ I+A++ GG HC D+ CL + A + IS Sbjct: 255 TIVFNAKGALMTYPSLATNQDFIKALLYGGKLPSYHCTDTGPQSHCLSIDATSTQEISAK 314 Query: 305 NALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLT 364 AL +Q+ +LL I + L DK+KG I T VF + Y+L Sbjct: 315 KALVAQVQELLLGIYDNIKMGKELSDKQKGLIELTQPAVFNLISANAQQNTGIQGSYELA 374 Query: 365 DYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQDA 424 + D+L QY+ + R ++ + N+ A + +A F ++ + + +A Sbjct: 375 QSVATDLLAQYLSNSLDIIRGSLSGKELGAHNEERLYKNLQLAQQFVARFSTESRERFNA 434 Query: 425 LLVVDRQMSYMRQQLSARMLSRYQNNY 451 L + + +Q + + + Y Sbjct: 435 ALQTNELIRNNVKQALSALTPTLRTAY 461 >UniRef50_D0Z585 IncF plasmid conjugative transfer pilus assembly protein TraH n=2 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z585_LISDA Length = 457 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 156/457 (34%), Positives = 246/457 (53%), Gaps = 10/457 (2%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +K L +L +L+ A V+SD+ FF+ L F N T P +QGQAA Y GGS Y Sbjct: 1 MKKLAILIPLMLSNPTV--AGVDSDLGSFFDGLTFEGNATLPQSYQGQAANYYTGGSAYI 58 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 RT VK +QL ++T+P+INAGCGGID + G FSFIN +QL K I+SNA + DLALQ Sbjct: 59 RTPVKQMQLATITVPEINAGCGGIDLFAGGFSFINSDQLVSMGKAIVSNAVPFAVDLALQ 118 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQK-VCQDIAGESNI 183 T P++K KD L+ +A +IN+++++SC+AAQ I L V ++ +C + ++N Sbjct: 119 TWAPQLKNVKDRLEAIAREINALSVNSCEAAQAGISALAGFAGVGEKNYICATMGTQNNS 178 Query: 184 FADWAASRQGCTVGGKSDSVRDKASD--KDKERVTKNINIMWNALSKNRMFDGNKELKEF 241 FADWAA++ GC ++ A++ K K+ V N NI+W +L KN G+++L EF Sbjct: 179 FADWAAAKNGCNNEASANQQVKNATNDPKLKDFVAANRNIIWYSLHKNGFLSGDRQLAEF 238 Query: 242 VMTLTGSLVFGPNGEITPLSARTT-DRSIIRAMMEGGTAKISHCNDS--DKCLKVVADTP 298 M+L+G++V+ T + T ++I M +GG A C+ S + CLK T Sbjct: 239 FMSLSGTIVYDDKMSATRYPSLLTSSNNLIEVMTQGGEASYYRCDTSGQNGCLKPTQAT- 297 Query: 299 VTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVS-N 357 +TI++D ALK ++ LL SI K SD L + E F+ S ++PV K + G S Sbjct: 298 LTINQDKALKHRVAVLLRSIITKYRSDQGLSNNETQFLDSVSLPVLKMMTVSLESGYSLE 357 Query: 358 SMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQ 417 S I I D++ Y+Q+ ++ + + + + + + + A+ Q+ + Q Sbjct: 358 SSINAYAQVISTDLVTAYLQDALKVIQGALDSKGSNPEDVAALYIVIGQASEQMRLSRIQ 417 Query: 418 VQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFG 454 +A + R + Q++ + + N FG Sbjct: 418 ALQTLEAEQSIIRATMELEQRVEGSFSGQARQNLLFG 454 >UniRef50_A8QYR4 TraH protein n=2 Tax=Legionellaceae RepID=A8QYR4_9GAMM Length = 454 Score = 397 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 149/453 (32%), Positives = 257/453 (56%), Gaps = 17/453 (3%) Query: 6 KPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYAR 65 K L LC L A+V++D++ FFN +G+ASN T P ++ QAAG+ GGSLYAR Sbjct: 3 KVFLTLC--LFGFFSTVEANVSTDLDNFFNGMGYASNVTSPAAFESQAAGFFGGGSLYAR 60 Query: 66 TQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQT 125 QV+ QL+ + LP AGCGGID + GS SF++ ++L K +M+NA Y D+ L + Sbjct: 61 NQVRQYQLVQLDLPSYRAGCGGIDLFTGSMSFLSEQKLVDLGKSVMTNAGVYAVDVMLAS 120 Query: 126 TVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIA--GESNI 183 TVPE+K +D+LQ++ N +++SCQ +Q ++GG++P+T SQQK+C+D A G+ + Sbjct: 121 TVPELKQVRDYLQQLEQMANQASINSCQLSQNMVGGIWPKTAESQQKICKDQAAMGKEGL 180 Query: 184 FADWAASRQGCTVGGKSDSVRDKASDKD--KERVTKNINIMWNALSKNRMFDGNKELKEF 241 F+D+ +R C G D+V +KAS + K++V N N++W+ L + ++EL E Sbjct: 181 FSDYVKARMAC-SGNGFDNVMNKASQDETRKKQVVLNKNLVWSLLQSKSFLNSDRELAEM 239 Query: 242 VMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGG----TAKISHCND---SDKCLKVV 294 VM+LTG+L+ G++T + + ++ +I A++ G TAKI C D ++C++V Sbjct: 240 VMSLTGTLIIDKEGKVTNVPSLASNADLINALVGTGNGVRTAKIWRCKDVTAGNQCMQVS 299 Query: 295 ADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVD--PQM 352 +TI+ ++ L S++ +++ +I K D +E F+S T++PV K+L Sbjct: 300 L-QDITIAENSTLTSKVREIIRTINTKLAKDEKPTSREINFLSMTSLPVMKFLSVLNSTQ 358 Query: 353 LGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIA 412 + I + I +D+L Y+ EL+ + A + ++ I ++ AT ++ Sbjct: 359 YSSAAVDIEEYATLIAHDLLTHYLTELLAEVSNATAGSELNSDLVNDIQKRIHTATSKVT 418 Query: 413 AFQSQVQVQQDALLVVDRQMSYMRQQLSARMLS 445 A +V + L + M+ + +Q+++ M S Sbjct: 419 ALDPKVGRKLKEKLSLIEHMARIEKQVASTMNS 451 >UniRef50_A5KZG8 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZG8_9GAMM Length = 453 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 127/450 (28%), Positives = 237/450 (52%), Gaps = 7/450 (1%) Query: 10 VLCAALLTVTPAASAD-VNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV 68 L A L+++ + A + M+ F++ F N T P +QGQ+A Y GSL+ART + Sbjct: 5 TLLALLMSIAGSLHAGGLGDAMDSFWDDSSFNHNLTNPSAYQGQSATYYNAGSLFARTNI 64 Query: 69 KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVP 128 KN+QL ++T+P ++ GCGGIDA++G FS IN +QL F K +++NA + DLALQT P Sbjct: 65 KNIQLAAITMPSVSVGCGGIDAFMGGFSHINSDQLVSFGKAVIANAVPFAVDLALQTWAP 124 Query: 129 EIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRT-QVSQQKVCQDIAGESNIFADW 187 IK +D LQ +A + +++SCQ AQ I GL T +++ C + +SN FADW Sbjct: 125 SIKENRDKLQDIADQFLTTSMNSCQVAQSAIDGLAAFTDGEAKRHACATLGTQSNAFADW 184 Query: 188 AASRQGC-TVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLT 246 ++ C +V ++ D V ++N++W+AL K+ N+E+ EF+++LT Sbjct: 185 LEAQHECRSVRTNQSTLAGNTDDATAHAVKVSLNVVWDALMKSAYLQDNQEVAEFILSLT 244 Query: 247 GSLVFGPNGEITPLSA-RTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTISRDN 305 G++++ G + + A + + I A++ GG ++ C++++ CL ++ + +++S Sbjct: 245 GTVIYDAQGTPSYIPAMLVGNDTAINALLTGGDLEVYRCDNTETCLS-MSLSAISLSESQ 303 Query: 306 ALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLTD 365 A +++ + ++ SD P+ + EK F+ + IP+ L+D L + + Sbjct: 304 AFNAKVRHTVDTLYAHLQSDQPITESEKSFVELSDIPILAMLIDDAHLNLQP-ESHLYAQ 362 Query: 366 YIGYDILLQYIQELIQQA-RAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQDA 424 I D+L Y+ ++ ++M + + + + +N A + + + + + +A Sbjct: 363 NIAADLLHAYLNNMLMIVNQSMTNLASVNPTDVNRTLEGINRARDYLQTLRDRHKTKLNA 422 Query: 425 LLVVDRQMSYMRQQLSARMLSRYQNNYHFG 454 L + ++ R+ LS +N FG Sbjct: 423 YLALTERLKRKRKLLSQSASDATLSNLTFG 452 >UniRef50_Q3IUV3 TraH n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IUV3_RHOS4 Length = 465 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 118/450 (26%), Positives = 225/450 (50%), Gaps = 9/450 (2%) Query: 8 LLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQ 67 +L + T A A + D+ F+ + G N T+P +QGQ GY GSLY RT+ Sbjct: 11 ILAGALSCATAGSAIPAGLGDDLKDFWERTGGGVNVTRPQAYQGQMGGYVTLGSLYMRTK 70 Query: 68 VKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTV 127 +N ++ LP + AGCGGID + GSFSFI+ E++ ++ IM NA+ + F+LAL++ Sbjct: 71 PRNSSMLQFQLPSVRAGCGGIDIFGGSFSFISKEEMIYLMEGIMQNASSFAFELALESLS 130 Query: 128 PEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADW 187 P + L+ + ++N+MN++SC+A Q ++G L+P+ + Q +CQ + G + FAD Sbjct: 131 PAVAEQVAKLRDLLQEVNAMNINSCEAGQMLVGSLWPKMDGASQHICQTVGGMNGTFADA 190 Query: 188 AASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTG 247 + R GC GK + A ++V +IN W A+ KN N + E M++TG Sbjct: 191 VSRRHGCGTEGKQNQTLRGAKGALADQVPVDINYAWRAVKKNGFLASNPTIGELFMSMTG 250 Query: 248 SLVF----GPNGEIT--PLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTI 301 +++ N ++ R ++ A+++GGT I CND++KCL VT+ Sbjct: 251 TIITTGAANDNEGPKHRTIAPRAFTPEMLVALVDGGTIPILKCNDTNKCLNPTWK-DVTL 309 Query: 302 SRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVS--NSM 359 +RD+A +++ K++ ++ + DT L ++ G I T+ PV++ L + + Sbjct: 310 ARDDAYFARVRKVVKALSDAIRDDTELTEEMIGIIGLTSAPVYETLKTARAYKYQFVDDE 369 Query: 360 IYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQ 419 I L++ + ++ + Y+ E + + + + ++ + + + + + Sbjct: 370 IALLSELVAVELAMLYMNETLTEMGRSASNVDTFGDIVREFQETIRNTQNGFGTLRREAA 429 Query: 420 VQQDALLVVDRQMSYMRQQLSARMLSRYQN 449 + L ++ + L+A +++ + Sbjct: 430 EKYADALSAIEKLQLHKAMLTAGSSTKFAS 459 >UniRef50_C9NPT8 IncF plasmid conjugative transfer pilus assembly protein TraH n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NPT8_9VIBR Length = 460 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 126/433 (29%), Positives = 216/433 (49%), Gaps = 12/433 (2%) Query: 23 SADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDIN 82 +A + + F++ L + N + +QGQAA Y GGS+Y R +++ L ++TLP I Sbjct: 22 AAGLQDALEAFYDGLDYQENVSTAHAYQGQAAHYYTGGSVYVRAPSRSLSLGAVTLPSIK 81 Query: 83 AGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMAS 142 AGCGGIDA++G FS IN E+L F K +++NA + DLALQT P+IK +D LQ +A Sbjct: 82 AGCGGIDAFMGGFSHINSEELVHFGKAVVANALPFAVDLALQTWAPQIKQIRDHLQSVAD 141 Query: 143 DINSMNLSSCQAAQGIIGGLFPRTQ-VSQQKVCQDIAGESNIFADWAASRQGCTVGGKSD 201 + ++SSCQAA+ I GL SQ+ VC + +N F+DW A++QGC VGG++ Sbjct: 142 RWLNQSISSCQAAEAGISGLAAFAVPQSQKHVCATMGVRNNAFSDWVAAQQGCGVGGQAR 201 Query: 202 SVRDKA--SDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTGSLVFGPNGEITP 259 + +A S+ + N++W+AL + L EF+M+ TG++++ Sbjct: 202 TQLKQARQSEDLSALTKFHHNLVWSALMAVPQLASDPSLAEFLMSTTGTVIYDTTQHRHQ 261 Query: 260 LSARTTDRS-IIRAMMEGGTAKISHCND--SDKCLKVVADTPVTISRDNALKSQITKLLA 316 + T+ + ++ ++ GG ++ HC D + CL T+S +L+ ++ + L Sbjct: 262 YPSLVTESNRLVETLLTGGRVELYHCQDRSAKGCLAP-QRAWRTVSPAQSLQQRVQRTLI 320 Query: 317 SIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYI 376 S+ DTPL ++ + +T P+ G + + I D+L ++ Sbjct: 321 SLDLALREDTPLTTHQRALLEATRSPILAVFNSVHRAGSTPNFAAH-ARVIAVDLLETFM 379 Query: 377 QELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQ---QDALL-VVDRQM 432 Q ++ R V D + I ++ A F Q + Q Q+A + Q Sbjct: 380 QAMLSNVRQAVVRQPLDRDELTEIEQSIIRVQAFSARFTQQAREQLQWQNAFIAHYQYQD 439 Query: 433 SYMRQQLSARMLS 445 ++ RQ+L + + Sbjct: 440 AHQRQRLRRLLST 452 >UniRef50_C5SIL6 TraH family protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIL6_9CAUL Length = 461 Score = 386 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 138/463 (29%), Positives = 242/463 (52%), Gaps = 12/463 (2%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 M +K + LL TP A+ADV+ M+ F++ A+N + P V+QGQAAGY G Sbjct: 1 MKAHLKAGACIVLTLLAATP-ATADVDGAMDDFWSDSMTATNGSGPSVYQGQAAGYYTLG 59 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 + R N Q+ S+ +P + +GCGGID Y GSFSFIN +Q+ +K I NA G F Sbjct: 60 NYSYRAPQMNTQIASVGVPSVKSGCGGIDIYGGSFSFINSDQIVATMKAIAQNALGLLFQ 119 Query: 121 LALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGE 180 +A+ + + + K D+N +N++SC+AAQ ++ G R Q +Q K C ++ Sbjct: 120 MAVDSLSELLGSNIKDAFKKMQDLNGVNINSCEAAQNLVAGTVNRIQAAQAKSCTEVGTT 179 Query: 181 SNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKE 240 S +F+DWA +++ C VGG++++ A+ K N N+ W A+ K+ +F + EL Sbjct: 180 SGLFSDWAKAKEQCGVGGQAEATAATAAADQK---PVNRNVAWEAIQKHPLFRDDTELAL 236 Query: 241 FVMTLTGSLVFGPNGEITPLSARTTDRS---IIRAMMEGGTAKISHCNDSDKCLKVVA-D 296 +MTLTG++V G NG +T + D + +I ++GGT ++ C +++ C +V Sbjct: 237 TMMTLTGTVVIGSNGGVTSIDVIPGDANKDGMITKFLDGGTYRVHQCANTE-CTQVTKYS 295 Query: 297 TPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQML--G 354 VT+ + +LK +++ +L SI NK S T L + EK F+ ++PV+K G Sbjct: 296 RDVTLDVNRSLKRRVSAMLVSIVNKIRSRTALSEDEKSFLGLVSLPVYKMASVQVAYQGG 355 Query: 355 VSNSMIYQLTDYIGYDILLQYI-QELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAA 413 + + + +D I D++L ++ Q + + A DE ++ +N+ +++ Sbjct: 356 FAAIEMERYSDVIALDLVLTWMSQNMAEMTAASQNLVGVDEKLLVDWQENVQSVRQELFQ 415 Query: 414 FQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGS 456 Q+ VQ + A+ + + + + + + SR + F + Sbjct: 416 RQALVQDRIVAMESIIAKTREVEKIIFSEGNSRIAQSLMFSST 458 >UniRef50_A5VGS4 TraH family protein n=5 Tax=cellular organisms RepID=A5VGS4_SPHWW Length = 487 Score = 374 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 136/459 (29%), Positives = 230/459 (50%), Gaps = 16/459 (3%) Query: 9 LVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV 68 +L A+ + A ADV MN FFN G A+N T P +QGQ+AGY G+++ R Sbjct: 21 AILAASHFALVGVAHADVAGQMNSFFNDAGGAANVTGPSAFQGQSAGYYSMGNVWTRFPQ 80 Query: 69 KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVP 128 K+V ++ LP AGCGGID + GSFSFIN ++ +K +NA G+ F LA+ + P Sbjct: 81 KSVSPFNLQLPSARAGCGGIDLFSGSFSFINASEIVAMLKATANNALGFAFKLAIDSVSP 140 Query: 129 EIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWA 188 EI D + A +N MN+SSC+ AQ ++GG++P+ ++ +C+ I IF+DWA Sbjct: 141 EIGKVMDEFSQKAQLLNQMNISSCETAQALVGGIWPQMDTTRSTICEAIGNSQGIFSDWA 200 Query: 189 ASRQGCTVGGKSDSVRDKASDKDKER--VTKNINIMWNALSKNRMFDG-NKELKEFVMTL 245 ASRQGC G + D+ SD + V + N W AL K F ++ EF+MTL Sbjct: 201 ASRQGCNNGNQRDNTIAGNSDASMKDQLVGEPHNYTWEALKKAGKFGAFDQSFSEFIMTL 260 Query: 246 TGSLVFGPNGEI----TPLSARTTDRSIIRAMMEGGT----AKISHCNDSDKCLKVVADT 297 G+++ P+ + + + +++ A+++G K+ CND + C +V T Sbjct: 261 VGTVITKPSDDPSVGGKVVMIGPAEDAVVTALLDGTADAPPVKLLKCND-ENCYEVGEQT 319 Query: 298 PVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDP--QMLGV 355 +++ +AL+ +I L+ S+ +K SDTPLD EK ++ T+P+FK L + Sbjct: 320 -LSVPASSALRPRIEALIQSMNDKIRSDTPLDAAEKQLLNIATVPIFKILSVQAYAHYSL 378 Query: 356 SNSMIYQLTDYIGYDILLQYIQELIQQA-RAMVATGNYDEAVIGHINDNMNDATRQIAAF 414 S I +++ + D+L + ++ + ++ V +D+A + A + A Sbjct: 379 SPGEIQAMSEIVAVDLLTAMLDNMMDRVEQSQVHYQTFDQATAAQWKAQIAAARAKYAQR 438 Query: 415 QSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHF 453 ++ + + + + + L M + F Sbjct: 439 DVKLNNKLQVTMQLINRSMMLESTLQNSMTPGMASALTF 477 >UniRef50_Q6MB86 Putative F pilus assembly protein traH n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB86_PARUW Length = 452 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 118/453 (26%), Positives = 236/453 (52%), Gaps = 18/453 (3%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +KPLL LL+ + AD+++D+ + ++L S+ + ++ Q AGY GG + Sbjct: 1 MKPLLFFI--LLSFSLTLRADLHNDLKSYLSELNTYSHVDKNEIYHSQRAGYMTGGGISI 58 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R + L ++LP +AGCGGID + G SFI+ +QL +K I S+A GY F L ++ Sbjct: 59 RNGASHTALAQVSLPKFDAGCGGIDIFTGGISFISHDQLIAALKNIASSAQGYAFMLGIE 118 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIF 184 T P I + ++ A+ INS+ ++SC+ A G++G ++P ++Q++C+ A Sbjct: 119 TVSPLIASTMKQMETWANAINSLGINSCEVATGLVGSVWPARTAAKQQICRS-AKNGGFA 177 Query: 185 ADWAASRQGCTVGGK-SDSVRDKASDKDKE-RVTKNINIMWNALSKNRMFD--GNKELKE 240 + + +R C G + +++ A D + + + N+ W A+ K+ N+++ E Sbjct: 178 SSFINARHQCADEGDYAKTMQSMAKDPLYDGMLLEEYNLTWKAVQKHPFLAKKENRKMAE 237 Query: 241 FVMTLTGSLVFGPNGE--ITPLSARTTDRSIIRAMMEGGTAKISHC---NDSDKCLKVVA 295 +M+LTG+L+ + + P +R D S + ++EGGT ++ C N CL + Sbjct: 238 EIMSLTGTLIIRRDKSLVVEPWPSRIYDDSFLPILLEGGTTRVYQCTGGNAKQNCL-ALE 296 Query: 296 DTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLG- 354 +TI + A K +I + LA+IQ K ++DTPL +E +S + +P+FK + Sbjct: 297 MKELTIPAEQAWKGRIKQALATIQQKILADTPLASEEIDLLSKSRLPLFKIVNVLTAYKR 356 Query: 355 -VSNSMIYQLTDYIGYDILLQYIQELIQQARAM---VATGNYDEAVIGHINDNMNDATRQ 410 VS +Y++ + +G ++L+QY++E+I R + G + + + + Sbjct: 357 EVSPISLYEVAEIVGNEMLIQYLREIIGTVRLAAIQLERGQMYDFDSQKFIEELERVEKV 416 Query: 411 IAAFQSQVQVQQDALLVVDRQMSYMRQQLSARM 443 ++ ++ + + +A + ++ + Q++++++ Sbjct: 417 VSRYEERHYQRLEAENQLMLKIETLEQKIASQI 449 >UniRef50_Q0F376 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F376_9PROT Length = 463 Score = 362 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 132/469 (28%), Positives = 222/469 (47%), Gaps = 30/469 (6%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +K +L A+ + ASA +N DM F++ LG + N T GV+Q QA GY GG ++ Sbjct: 1 MKRILCALLAVACLATEASAGINQDMRNFYSSLGMSGNVTPAGVYQSQAGGYFTGGGMFI 60 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 + V++ QL+S+T P I+ GCGGID YLG FSFIN Q + ++ I +NA GY F+LALQ Sbjct: 61 KAPVRSYQLLSITPPSISEGCGGIDLYLGGFSFINKAQFTQMLRNIGNNAVGYAFNLALQ 120 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIF 184 T P+I + LQK+ IN +++SC AAQ + GL + K CQ IA I Sbjct: 121 TFAPQIYSTMQDLQKVIQKINQASINSCHAAQTAVNGLVGVLTENSAKGCQAIAMARGIV 180 Query: 185 ADWAASRQGCTVGGKSDSVRDKAS--DKDKERVTKNINIMWNALSKNRMFDGNKELKEFV 242 +D+ + + C GG ++ ++KE+ N++W + K + +KEF+ Sbjct: 181 SDYKDAERYCQSGGARRNIYYGMPLTPQEKEQQMARKNLLWTGMKKQTYTGLSASMKEFL 240 Query: 243 MTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGT-----AKISHCNDSDKCLKVVADT 297 M+L G+ V P ++ + GT A++ C+ + CLK Sbjct: 241 MSLVGTYVIETAAGGQPDVRYLAPTALKLEQLVNGTGGVAAAEVYKCDTATDCLKP---A 297 Query: 298 PVTISRDNALKSQITKLLASIQNKAVSDT-----PLDDKEKGFISSTTIPVFKYLVDPQM 352 V I D + Q+ L I+ K S+ L + I + +PV K + Sbjct: 298 KVKIPLD-GYRKQVQAALDEIRTKLSSERFGAPAQLTANTRKLIGISRLPVLKMMTTAVA 356 Query: 353 LGVSNSMI--YQLTDYIGYDILLQYI----QELIQQARAMVATGNYD--EAVIGHINDNM 404 LG S ++ +L + + +D++ Y+ + + AR + AT + A++ + D+ Sbjct: 357 LGPSVALQVENELVEPVAFDMVATYLDWAYKAAVDSARQVAATAPKELWGALMASV-DSR 415 Query: 405 NDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHF 453 N R+I A + ++ ++ Q L + + +Q + + Sbjct: 416 NREFREITK-----NRNFMAATEILQKARFLDQVLISNLTPHFQEVFQY 459 >UniRef50_Q1N8Y9 Pilus assembly protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N8Y9_9SPHN Length = 449 Score = 361 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 131/444 (29%), Positives = 224/444 (50%), Gaps = 19/444 (4%) Query: 30 MNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGID 89 MN FF+ LG +N T PG +QGQ+AGY GG LY R +++ IS++LP ++AGCGGID Sbjct: 1 MNNFFSGLGGGANVTGPGAYQGQSAGYYTGGGLYTRAPQQDITPISISLPKVSAGCGGID 60 Query: 90 AYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNL 149 + G FSFIN +QL F+K +NA G+ F LA+ +I D +Q +A+ +N+ N+ Sbjct: 61 IFTGGFSFINSDQLVAFLKATANNAIGFAFKLAIDAISQQIGKVMDTMQDIANKVNTTNI 120 Query: 150 SSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASRQGCTVGGKSDSVRDKASD 209 SSC AA+ ++G ++ +C+ + + IF D+A +R GC K+ SV +D Sbjct: 121 SSCNAAKALVGTTASMLTSHKEYICETLGNDKGIFTDFAKARSGCGNENKAASVIQDNAD 180 Query: 210 KDKERVTK--NINIMWNALS--KNRMFDGNKELKEFVMTLTGSLVF-----GPNGEITPL 260 +KE N W A+ K+ N E EF+MTL G++VF G GE + Sbjct: 181 PNKEGENALLPRNYTWWAIYKGKDASVAPNHEFAEFMMTLLGTVVFKGKGAGDEGEGSTR 240 Query: 261 SARTTDRSIIRAMMEGGTA---KISHCNDS--DKCLKVVADTPVTISRDNALKSQITKLL 315 D + I+ M++G K+ CND D CL V+ V + + AL+ +I ++ Sbjct: 241 -VIAPDLTAIKTMLDGDAVSGSKMLKCNDYTPDGCLD-VSQQAVPVDQAQALRPKIQAMI 298 Query: 316 ASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQ--MLGVSNSMIYQLTDYIGYDILL 373 S+++K ++DT L + E + T++P++K + +G+S S I L++ + D++L Sbjct: 299 ISMRDKVLTDTALSNDEVALLGMTSVPLYKVVTVTATSSVGLSQSEIQTLSEVVAVDVVL 358 Query: 374 QYIQELIQQARAMVATGNYD-EAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQM 432 ++ ++Q + + N N++ + ++ V + + + Sbjct: 359 SMVETMVQNVQKDMRENNAPISPAFTTWRSNLSTVNTAVGELRATVSQRFQTTQSIVERT 418 Query: 433 SYMRQQLSARMLSRYQNNYHFGGS 456 + +QL + + F S Sbjct: 419 QMLEKQLRNNLAPQLTAALGFSRS 442 >UniRef50_A0B4P9 TraH family protein n=5 Tax=Proteobacteria RepID=A0B4P9_BURCH Length = 481 Score = 344 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 121/480 (25%), Positives = 208/480 (43%), Gaps = 35/480 (7%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 M + ++ + AA+ + P + ++ M Q F+ + N + P QG+ GGS Sbjct: 1 MKPTRWIVAMTAAVFAIAPVCTQAMS--MQQVFDSINAMGNVSSPRALQGETMDMYSGGS 58 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 ++ RT K QL S+T P+ AGCGGID + G FSFIN EQ ++ I SNA GY F L Sbjct: 59 VFMRTPHKTYQLASVTAPEWGAGCGGIDLFTGGFSFINKEQFVALLRNIGSNALGYAFKL 118 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQ-KVCQDIAGE 180 ALQ P LQ +A D+N MN+ SCQAA+GI+ + P +Q + + Sbjct: 119 ALQNLCPTCDNVMQSLQAIARDVNRMNIDSCQAAEGIVNAVTPVAWKKEQANLADTLGPF 178 Query: 181 SNIFADWAASRQGCTVGGKSDSV---RDKASDKDKERVTKNINIMWNALSKNRMFDGNKE 237 +N+++D + + ASD + N+ W AL ++ D + Sbjct: 179 TNLYSDMTDAWTNTGNSSAQAAQTINTATASDSNLAAKQPYGNVTWQALQ--QLPDLSTS 236 Query: 238 LKEFVMTLTGSLVFGPNG-----EITPLSARTTDRSIIRAMM-------EGGTAKISHCN 285 +EF+M+L G+++F E+ P+ ++ ++ G T ++ C+ Sbjct: 237 DREFLMSLVGTVIFPAPSDSGGTEVNPVFLPRIGSLTVQELVGNDPAANSGTTIQVYVCD 296 Query: 286 DSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFK 345 ++ KCL ++ ++ + +I +++ P D F+S T +PV+K Sbjct: 297 ETTKCLNPSVQEIGYTPFRTLVQQKLQVITDAIASRSAIPNPADTF--RFLSMTDLPVYK 354 Query: 346 YLVDPQMLGVSNSMIYQLTDY---IGYDILLQYIQELIQQARAMVA--------TGNYDE 394 + L S+ L+ Y I YI + R +A T DE Sbjct: 355 MIAVGTRLNNSSLADQLLSTYQSLIAAKYAEAYIHGSAEDLRRAIARYGTVKSSTSLLDE 414 Query: 395 AVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFG 454 A +N N++ + + Q Q + Q+ + + + A + S +N+ FG Sbjct: 415 AT--KLNTNIDTVESEARSVVMQAFSQTSNAWQLVEQLQSIERAVHANVSSSLRNSLAFG 472 >UniRef50_UPI00016AD114 TraH family protein n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016AD114 Length = 482 Score = 341 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 121/470 (25%), Positives = 198/470 (42%), Gaps = 26/470 (5%) Query: 9 LVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV 68 V+ A L M FN + N T PG QGQ GGSL+ R Sbjct: 15 AVIAALSLACLVYTQPSAAMSMQDLFNSVNAMGNVTGPGALQGQTMDMFSGGSLFMRMPR 74 Query: 69 KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVP 128 + Q+ SMT P NAGCGGID ++G FSFIN EQ ++ I SNA GY F LA+Q P Sbjct: 75 RTYQVASMTPPSWNAGCGGIDLFMGGFSFINKEQFVAMLRNIGSNALGYGFKLAIQNLCP 134 Query: 129 EIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQV-SQQKVCQDIAGESNIFADW 187 L A +N +N+ SC AA+G++ P T +Q ++ +SNIF + Sbjct: 135 TCDNVMQALAATAQQVNRLNMDSCTAAKGLVNAALPDTWTRGKQDAAKNFGVDSNIFENI 194 Query: 188 AASRQG-CTVGGKSDSVRD--KASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMT 244 + K++ V D K S+ + V N++W AL E + +M+ Sbjct: 195 TDAWTNVMDDESKANDVIDSVKNSNPQAKDVLPTGNVVWKALKHVDGM--TDEDRMVLMS 252 Query: 245 LTGSLVFGPNGEI--TPLSARTTD---RSIIRAMMEGGT---AKISHCNDS--DKCLKVV 294 L GS++F + TP TD ++I + ++ G+ I C+ + D CL Sbjct: 253 LVGSMIFPTDSGTPQTPRPLMPTDIDVATLIGSAIDKGSKVNVPIWRCDTTTDDGCLHPY 312 Query: 295 ADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLG 354 D T S +++++T + I N++ D D+ F+++T +PV+ + G Sbjct: 313 PDNLSTDSFYTMVENRMTSIADHIANRSPHDNV--DQVIAFLNTTDLPVYSMIATGTRYG 370 Query: 355 ---VSNSMIYQLTDYIGYDILLQYIQELIQQARAMVA-----TGNYDEAVIGHINDNMND 406 +S+ I D + YI+ ++ + + + I M+ Sbjct: 371 NTSLSDGAIATYVDLVAAKYAEVYIRRCVKDLQEAIGKYMALADATQADSLKEIQPQMDR 430 Query: 407 ATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGS 456 T + Q + + ++ M + + A + +N+ FG S Sbjct: 431 VTNLAHQALMKAYSQTVSTHNIALELQAMERAVDANLSETLRNSLAFGKS 480 >UniRef50_A1W643 TraH family protein n=5 Tax=Betaproteobacteria RepID=A1W643_ACISJ Length = 482 Score = 340 bits (872), Expect = 6e-92, Method: Composition-based stats. Identities = 117/461 (25%), Positives = 207/461 (44%), Gaps = 29/461 (6%) Query: 13 AALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQ 72 +LL T + AD+NS++N FN LG N T PG ++GQ GGSL R+ K Q Sbjct: 20 LSLLCTTMPSRADLNSEVNDMFNNLGAIGNYTAPGAFRGQTYNTYTGGSLMMRSPNKVYQ 79 Query: 73 LISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKT 132 L ++ P AGCGGID + GSFS I+ ++ + ++ I + G F LAL+ P + Sbjct: 80 LAAIQFPSAKAGCGGIDVFGGSFSHISAQEFKNMLRNITAALPGIAFQLALEAVSPLLGG 139 Query: 133 AKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASRQ 192 + + + + IN+ ++SC+ A+ I+ S Q+ C D+A + + +D A+R+ Sbjct: 140 LTKWAKGLETWINNARINSCETAKAIVSTAAEAVGYSAQETCADLAIDMGLESDRDAARK 199 Query: 193 GCTVGGKS--DSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTGSLV 250 C S S R + + N+ W AL + + E +E +M++ G+++ Sbjct: 200 RCGTDRPSILSSARSSGDANVRNKAPFVGNLTWKALQYTGAYLDDAE-RELIMSMVGTII 258 Query: 251 FGPNGEITPLSARTTDRSIIRAMMEG-----GTAKISH---CNDSDKCLKVVADTPVTIS 302 + P + I ++ G GT + H CND C V +T + Sbjct: 259 YYPEESKRDPEPIAPTLTSISQLLYGQAAGSGTDVVQHLRRCNDYTNCDVVSLNTNYS-- 316 Query: 303 RDNALKSQITKLLASIQNKAVSDTPL--DDKEKGFISSTTIPVFKYLVDPQML---GVSN 357 +++ ++ SI +K + TP+ + E GF++ TT PV+K L + G+++ Sbjct: 317 -HVPFTAKVETMMRSISDKIATRTPIPNNSAEVGFVNQTTEPVYKMLSVGTSIPGSGLAD 375 Query: 358 SMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQ 417 S+I Q D I D +++ + R +A + D + D N ++ A Q Sbjct: 376 SLIGQYRDVIAADYAYVFLERNL---RLGMAALSKDYTLQQTQRDQANQVRQRAQAMLLQ 432 Query: 418 VQVQQDALLV-------VDRQMSYMRQQLSARMLSRYQNNY 451 + +++ L V + + +QL M + Sbjct: 433 ISQEKNLLYQKVGSFRAVASHLEELERQLRTSMPQHVMDML 473 >UniRef50_B4EQN3 Putative TraH conjugative transfer protein n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4EQN3_BURCJ Length = 484 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 119/469 (25%), Positives = 201/469 (42%), Gaps = 32/469 (6%) Query: 10 VLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVK 69 V A L PAA+ M Q F+ + N T P QGQ GGSL+ R + Sbjct: 24 VSIACLAYTQPAAAMS----MQQLFDTVNAQGNYTSPAALQGQTLNMYSGGSLFMRMPKR 79 Query: 70 NVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPE 129 QL S+T P NAGCGGID ++G FSFIN EQ ++ I SNA GY F LA+Q P Sbjct: 80 TYQLSSVTPPSWNAGCGGIDLFMGGFSFINKEQFVAMLRNIGSNALGYGFKLAIQNLCPT 139 Query: 130 IKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQV-SQQKVCQDIAGESNIFADWA 188 LQ A IN +N+ SC+ A+G++ P T +Q ++ +SNIF + Sbjct: 140 CDNVMQALQATAQQINRLNMDSCETAKGLVNAALPDTWTRGRQDAAKNFGVDSNIFENVT 199 Query: 189 ASRQG-CTVGGKSDSVRD--KASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTL 245 + K+D V D K S+ + V N++W AL K E + +M+L Sbjct: 200 DAWTNVMNDENKADDVIDQVKQSNPAAKDVLPTGNVVWKALKKIDGM--TDEERMVLMSL 257 Query: 246 TGSLVFGPNGEIT-PLSARTTD---RSIIRAMMEGGT--AKISHCNDS--DKCLKVVADT 297 GS++F G P TD ++I ++G T I C+ + D CL +D Sbjct: 258 VGSMIFPTQGNAQAPKPLMPTDIDVATLIGNGVDGDTINVPIWRCDTTTDDGCLNPYSDQ 317 Query: 298 PVTISRDNALKSQITKLLASIQNKAVSDTPLDD--KEKGFISSTTIPVFKYLVDPQMLG- 354 T + +S + + ++ + + +P DD + F+++T +P++ L Sbjct: 318 LST----RSFRSMVMTKMNNMVDHIAARSPHDDVSQVIAFLNTTDLPIYAMLAAGTRYNN 373 Query: 355 --VSNSMIYQLTDYIGYDILLQYIQELIQQARAMVA-----TGNYDEAVIGHINDNMNDA 407 +++S + D I YI+ + + + + + + + Sbjct: 374 TQIADSTMGVYIDLIAAKYAETYIRRCTKDLQDAIGKYAALADSSQTQALSDLKPQLERI 433 Query: 408 TRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGS 456 Q + + + +++ M++ + + + +++ FG S Sbjct: 434 RNTAHEALMQAYTRTVSTHSLTTELAAMQRAVDSNLSETLRSSLAFGKS 482 >UniRef50_A1RH72 TraH family protein n=16 Tax=Gammaproteobacteria RepID=A1RH72_SHESW Length = 462 Score = 323 bits (828), Expect = 9e-87, Method: Composition-based stats. Identities = 120/467 (25%), Positives = 208/467 (44%), Gaps = 46/467 (9%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 M + L+ CA + + + A + +MNQ F G +NTT PGV++ Q G GG Sbjct: 1 MKKVFRVSLIACA--IGFSSMSQASLQQEMNQLF---GSMTNTTAPGVFESQRRGVISGG 55 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 S+ R ++ N L+SM P AGCGGID + GS SF+N +Q + ++ + +NA GY F Sbjct: 56 SVVVRNRIMNENLVSMVPPSFQAGCGGIDMFAGSLSFVNADQFVQLLRSVAANAKGYAFQ 115 Query: 121 LALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIG---GLFPRTQVSQQKVCQDI 177 LAL + + LQK +N +SCQ AQG++ F + ++ + + Sbjct: 116 LALSAMCEKCSQHMETLQKKIQQLNEYFGNSCQMAQGVVNDTLAAFGKKGQTEASMLSSL 175 Query: 178 AGESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNR----MFD 233 G ++F W+ S GK+ + T N++W AL ++ Sbjct: 176 KGAGDVFTSWSESN------GKNPYENASSVAASDVNKTIKGNLVWRALKRHSASSWFAS 229 Query: 234 GNKELKEFVMTLTGSLVFGP-------NGEITPLSARTTDRSIIRAMMEGGTAKISHCN- 285 G+ E VM++TGS++ G G+ L+ ++ I ++ GG + C+ Sbjct: 230 GDDRFLEAVMSVTGSIIVGDLANAADGQGKAPKLTRLNGNKVTIEHLIHGGNVAMYRCDT 289 Query: 286 -DSDKCLKVVADTPVTISRDNALKSQITKLLAS-------IQNKAVSDTPLDDKEKGFIS 337 D CL T VT++ L +Q+ LL I A + EK F++ Sbjct: 290 VTQDGCLNPTI-TNVTLT---GLSTQVENLLLGTGSSNGIIFKFARNTGAASTTEKAFMT 345 Query: 338 STTIPVFKYLVDPQML--GVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEA 395 S + + L G + S + +I ++ +++++ AR+ +G D A Sbjct: 346 SAPASIGGMIRTLSALNEGAARSFASRAAPFIAVEMARALVEDMLNAARS--TSGVEDHA 403 Query: 396 VIGHINDNMNDATRQI----AAFQSQVQVQQDALLVVDRQMSYMRQQ 438 + +++ A RQI AA Q + +Q+ L ++ + +R+Q Sbjct: 404 YAKLLTEDLERARRQINEEYAALQRRYGSEQELLAHFNQVIQTIRKQ 450 >UniRef50_Q1MY31 TraH n=1 Tax=Bermanella marisrubri RepID=Q1MY31_9GAMM Length = 475 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 110/462 (23%), Positives = 194/462 (41%), Gaps = 44/462 (9%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +K LL+L + + AD+ ++ F+ G SNTT+PGV++ Q A Y G Sbjct: 1 MKKLLILASLSIFSYFTWGADIGDEVESMFD--GAYSNTTEPGVYKTQGASYVTFGGYSE 58 Query: 65 RTQV--KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLA 122 R + KN+ L+++ P + AGCGGID G FS I+G++ ++ I NA FF L Sbjct: 59 RNPITKKNINLVNINPPKVTAGCGGIDLQAGGFSMIDGDEFVDNLRNIGQNAKSLFFMLG 118 Query: 123 LQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESN 182 LQ P I + + K D NL SC+AA ++GG + +S Sbjct: 119 LQLVTPTINDVMNKVNKFQKDYLQFNLDSCEAATQLVGGAMEYAGAEGGECIVRRMQQSG 178 Query: 183 IFADWAASRQGCTVG-GKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEF 241 D+A +++ CT G G+ +++ + N++W L ++ F N + Sbjct: 179 --DDYAEAKKHCTTGMGRRNTMETGGEN---TVTFSKGNLIWWHLMQDDFFKNNLDYSLL 233 Query: 242 VMTLTGSLVF-------GPNGEITPLSARTTD-------RSIIRAMMEGGT-----AKIS 282 VM L G+++ E+ +S T+ R+II A++ G ++ Sbjct: 234 VMNLLGTIIVKYDDNSADSGKEVIRISRAATEAGLTTDGRNIINALLSGTEGPAANLQLK 293 Query: 283 HCND----SDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISS 338 C D D C+ VTI + + + +A I ++ L F+S Sbjct: 294 TCTDMNNTKDACINYNGSNDVTIDW-KGMTTYVQDTIADINTAISNNGSLSSDALAFLSQ 352 Query: 339 TTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIG 398 T IP++++++ + S + +T I + L ++ E V Sbjct: 353 TPIPLYRFILLERANNPS-AQFSTVTRDIADKLALSHLYS---------GLLATIEVVRD 402 Query: 399 HINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLS 440 + D ++Q+ AF + V A++ + + Q+LS Sbjct: 403 RVGDTDMTESKQVKAFMKDLDVVASAIINEQQTTEFRLQELS 444 >UniRef50_D0SGX6 TraH family protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SGX6_ACIJO Length = 472 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 106/477 (22%), Positives = 197/477 (41%), Gaps = 32/477 (6%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 + + L L + + S + + M+ F+++ N QGQ Y GGS + Sbjct: 1 MNKIKALVLGLALGSASLSVNSSQSMSDVFDQINAYGNVAGGAAIQGQTMNYYTGGSAFV 60 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R L S+T P ++AGCGGID Y G FSFIN EQ K I S A GY F LA+Q Sbjct: 61 RIPKNTYNLASLTPPSVSAGCGGIDLYTGGFSFINKEQFIAMAKNIGSQALGYGFKLAIQ 120 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQV-SQQKVCQDIAGESNI 183 P LQ IN MN+ SC+AA+GI+ + + +++ + NI Sbjct: 121 NLCPTCDNVMQALQSTTQAINRMNIDSCEAAKGIVNATTAQLDLKGREQSAINFGTFKNI 180 Query: 184 FADWAASRQGC-TVGGKSDSVRDKASDKD---KERVTKNINIMWNALSKNRMFDGNKELK 239 F+D + G GK++ V + D ++ N N+ W ALS+ + K++ Sbjct: 181 FSDATDAWSGIKGNAGKTEQVNQNLQNSDPNIRDHTPSNGNLTWKALSRAGLTTTEKQM- 239 Query: 240 EFVMTLTGSLVF----GPNGEITPLSARTTDRSIIRAMMEGGT----AKISHCNDS---D 288 +M + G++ N + P + R + I + + G + C + D Sbjct: 240 --IMGMIGTVSITKDANNNNIVKPYARRVNN--ITDFIGKPGETSVKLPVWACGNGTGVD 295 Query: 289 KCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLV 348 +C ++ A + S +K ++ L+ +I N+ + + F++ T IPV+K + Sbjct: 296 ECTELTAAEQNSTSFYWMVKLKLDGLINAIANRQ--NITNSQELIDFVNVTDIPVYKLVA 353 Query: 349 DPQMLGVSNSMIYQLTDY---IGYDILLQYIQELIQQARAMV------ATGNYDEAVIGH 399 G ++ + L +Y + Y++ + + A + + Sbjct: 354 VNTRYGNGDAARFALNNYYELLAAKYAQAYVEMVARDVNAALDNYLAGTQSELYSQELKR 413 Query: 400 INDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGS 456 + + + +I + + + + +++ M + L + M + + +F S Sbjct: 414 LKEEIIQLRAEINTSIATTYQRTNVAYNIAMEVNQMERTLHSNMSQSLRQSVNFANS 470 >UniRef50_C4Z010 Putative uncharacterized protein n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4Z010_9RICK Length = 460 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 100/450 (22%), Positives = 201/450 (44%), Gaps = 31/450 (6%) Query: 9 LVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQ- 67 +++CA L + AA A + + M G SN+++ + Q Q G+ GGS+ +T Sbjct: 1 MIICALLQSA--AAYAGIETLMKSVMPS-GTLSNSSKAALIQDQLGGHLIGGSMVVKTPG 57 Query: 68 VKNVQLISMTLPDINAG---CGG-IDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLAL 123 + ++ L T P G C D +G+FS+I+ +++ +KQ+ NA+ Y + + Sbjct: 58 IDDITLGHFTPPTCKLGGLPCNAHFDLRMGAFSYISSKEMMESMKQMAQNASVYGGIMLV 117 Query: 124 QTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNI 183 +T P+ + +++ + +++ + +C+ I G + S + Q S Sbjct: 118 KTMCPQCENLMTWIESVGRNVSDILNVNCERMMAPITGAMDKFAKSAEAKRQADLYLSGK 177 Query: 184 FADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVM 243 D A Q SD V + K ++ +N N++W ALSK G ELKE +M Sbjct: 178 SKDSAEIVQKAKKDSDSDPVTHN--PELKTQLGENFNLVWKALSKTASQTGTTELKELLM 235 Query: 244 TLTGSLVFGPNGEITPLSARTTDRSIIRAMM-----EGGTAKISHCNDSDKCLKVVADTP 298 +++G++V G + + ++ +I M G + CN+ CL Sbjct: 236 SISGTIVIQ-KGLPPKIYSSLAEQELIEQYMGVSNKSSGQITLYVCNEDKLCLNPTKQQK 294 Query: 299 VTISRDNALKSQITKLLASIQNKAVSDT---PLDDKEKGFISSTTIPVF-KYLVDPQMLG 354 T + L S+++ LL S+ +K D ++EK I +++P+ K +D + Sbjct: 295 -TFTSSETLHSKLSTLLESMTDKIYKDKDNPDFTEEEKDLIDLSSLPLIPKIEMDLAIFK 353 Query: 355 VSNSMIYQLTDYIG---YDILLQYIQELIQQARAMVATGNY----DEAVIGHINDNMNDA 407 S ++ + D+I YD++ ++ +L+++ V +Y D + +N + Sbjct: 354 SSQNISVKSHDFITHLCYDVVTSHLAKLLKKTSDAVEELSYVQISDTGIFEQFANNAREI 413 Query: 408 TRQIAAFQSQVQVQQDALLVVDRQMSYMRQ 437 R I+ +S+ + D ++ + + +RQ Sbjct: 414 MRSISRAKSEAYKRYD---LISQMKARLRQ 440 >UniRef50_C4NV64 TraH n=17 Tax=Gammaproteobacteria RepID=C4NV64_ECOLX Length = 477 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 111/465 (23%), Positives = 206/465 (44%), Gaps = 35/465 (7%) Query: 1 MMPRIKPLLVLCAALLTVTPAASAD-VNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYG 59 + + L V + ++ T A +A+ + S M++ FN++ SNTT PGV++ Q G G Sbjct: 7 LKRSLLALSVAASLVMAPTGAIAANGLQSQMDKLFNEM---SNTTPPGVYESQRRGVLAG 63 Query: 60 GSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFF 119 G A+T++ + L+S P AGCGG+D + GS SFIN +Q+ + ++ + +NA GY F Sbjct: 64 GRFTAKTRIFDENLVSFAPPSWKAGCGGVDLFGGSLSFINADQIVQLLRAVAANAKGYAF 123 Query: 120 DLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAG 179 LAL P+ + QK +N +SCQ AQG + L + + A Sbjct: 124 QLALDNVFPDGAKWIENFQKKVQALNQHLGNSCQLAQGFVNDLTSGMDLKHKTDASITAT 183 Query: 180 ESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNR----MFDGN 235 S ++ D+ S+Q + + ++ D+ + + NI+W L N G+ Sbjct: 184 TSGLYEDFFGSKQETSGKSPLEELKANKPDEYNKMI---GNIVWKQLKSNNANTWFQYGD 240 Query: 236 KELKEFVMTLTGSLVFGP----------NGEITPLSARTTDRSIIRAMMEGGTAKISHCN 285 L E +M+LTG+++ G + TPL+ ++ + ++ GG+ +I C+ Sbjct: 241 NTLLEAIMSLTGTVIIGDLVNDPNSTGTGAKTTPLTTLPGNKITLSDLISGGSVEIYSCD 300 Query: 286 -DSDKCLKVVADTPVTISRDNALKSQITKLLAS-------IQNKAVSDTPLDDKEKGFIS 337 D+ CL + + +K+QIT +L I A + L D EK F+S Sbjct: 301 SDTTNCLSAGSSNKTVV--LKGIKNQITDMLLGTSSTPGVIYKYATNSGTLTDPEKAFVS 358 Query: 338 STTIPVFKYLVDPQMLGV--SNSMIYQLTDYIGYDILLQYIQELIQQARAMVA--TGNYD 393 + + + + +L +N + + I ++ + +E + AR +A Y Sbjct: 359 NLPGGIGTIVRNLSVLSQDGANLFATESSGAIALTMMYSFSEEFFRAARIAMANSKSPYK 418 Query: 394 EAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQ 438 + + + + + SQ + + + +R+Q Sbjct: 419 KEALELLAQSQQQIRAEYTILSSQYGDLASQIEKYNNLLDNIRKQ 463 >UniRef50_Q1RJF7 F pilus assembly protein TraH n=31 Tax=Rickettsieae RepID=Q1RJF7_RICBR Length = 446 Score = 295 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 113/447 (25%), Positives = 207/447 (46%), Gaps = 26/447 (5%) Query: 3 PRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS- 61 + +L++ L T T A D+ F + + N T+PG +Q QAAGY Y Sbjct: 16 KHVMHILMIILLLQTTTTYAW-----DLQDVFQGM--SVNVTKPGSYQSQAAGYYYAAGG 68 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 L RT + IS+T P +N C GID+YLGSFS I+GE+L + +K I + A Y F L Sbjct: 69 LSIRTNKTSFNPISITPPSLNMSCSGIDSYLGSFSIISGEELVQLMKNIGTQAKAYAFSL 128 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGES 181 L+T P+I+ A L+ +A ++N C+ + I + P+ ++ VC+D+ S Sbjct: 129 GLKTFAPQIENALKDLRNLAMEMNQFAKGDCEMTKAIFASILPKDSAMRESVCRDLQSSS 188 Query: 182 NIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEF 241 D+ A+ + C + ++D E + N NI A K + + ++ Sbjct: 189 GF--DYFAAGKKCRSDLEQKQALANIQNQDPELMLTNYNIFIKAAEKAGIPEN---MRSA 243 Query: 242 VMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTI 301 +M++TG+++ N S ++S I + G +A I C++S+ CL +TI Sbjct: 244 IMSMTGTIIVRDNNVYFLESLAQDEKSWIAHLKGGESASIYTCDNSN-CLNPDLRRNITI 302 Query: 302 SRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISST--TIPVFKYLVDPQMLGVSNSM 359 D + + + L +++K S+ + + F+SS P++ Y+ + GV ++ Sbjct: 303 VLDQSYQGKAKTKLDELKSKLTSNNEFSNADISFLSSIGEAFPIYDYITLEAISGV--TI 360 Query: 360 IYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQ 419 + ++ + LLQ+++E+ + R V + H+ + + + Q Q Sbjct: 361 LDSSSELVASYSLLQHLKEVTSEVRKAVTMLKSKQVADHHLTAYL----KALDRVQLFAQ 416 Query: 420 VQQDALL----VVDRQMSYMRQQLSAR 442 + +L +DR+ + Q L A+ Sbjct: 417 EKWSNMLTSSDQIDRRARLIEQHLIAK 443 >UniRef50_B4RLQ8 TraH n=13 Tax=Neisseria RepID=B4RLQ8_NEIG2 Length = 452 Score = 277 bits (707), Expect = 8e-73, Method: Composition-based stats. Identities = 101/431 (23%), Positives = 187/431 (43%), Gaps = 38/431 (8%) Query: 37 LGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFS 96 +G +N T+ G + GQ+ GG + R V ++ L ++ LP I+AGCGGID + GSFS Sbjct: 1 MGAEANYTEAGAFHGQSGSLYTGGGMSVRFPVSDISLGNIQLPSISAGCGGIDFFAGSFS 60 Query: 97 FINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQ 156 F+N EQ +F + + +NAAG FDLAL+ P I+ A ++ + + +N +L+SC+ +Q Sbjct: 61 FVNKEQFIQFTRNLGNNAAGVAFDLALKALDPMIQDAIGGIRDLVNYVNQNSLNSCKLSQ 120 Query: 157 GIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASRQGCTVG----GKSDSVRDKASDKDK 212 I+GG + C+ + +S D A C ++D VR+ +D Sbjct: 121 DIVGGAMGKLGSLASSNCRAASVDSGSSNDPAEGAWYCQAAKNLVHEADKVRNTGKPQDT 180 Query: 213 ERVTKNINIMWNALSKNRMFDGNKE----LKEFVMTLTGSLVFGP----NGEITPL---- 260 T N+ + A+ + G + +F ++ G++VF P G+ Sbjct: 181 ISFT-GGNLTYEAMK---NYTGQRSKLGIDMDFYYSMLGTIVFTPLTQHEGDKDKYTVGI 236 Query: 261 ----SARTTDRSIIRAMME-GGTAK------ISHCNDSDKCL--KVVADTPVTI-SRDNA 306 + + ++ GG + + C D K L V I S Sbjct: 237 QSFEPKILSIQDLLNGKNNAGGEIREKVVLDMWTCKDGSKKLMENCTEKNDVEIPSLRYM 296 Query: 307 LKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLTDY 366 + +I L +I+N + + ++++ +P+ K V LG + D Sbjct: 297 VHKRIETLPTAIRNNQGWNLSTRKQIAAIVNNSKLPILKMAVSDAFLGTGYLKKTAVLDA 356 Query: 367 IGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQ-VQVQQDAL 425 I DI+ + + +Q R+ + G Y++ + + + +S+ Q + D++ Sbjct: 357 IAVDIMANILDQSERQVRSTL--GMYNKTD-DASGEAVRKLFANLGELRSRIYQERIDSM 413 Query: 426 LVVDRQMSYMR 436 ++ + S MR Sbjct: 414 KKIEIEESMMR 424 >UniRef50_Q5NX61 Sex pilus assembly protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX61_AZOSE Length = 474 Score = 261 bits (668), Expect = 3e-68, Method: Composition-based stats. Identities = 102/489 (20%), Positives = 197/489 (40%), Gaps = 59/489 (12%) Query: 2 MPRIK-PLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 MP IK L + +L T+ A + ++ G N T P +Q Q GG Sbjct: 1 MPNIKIAALAVGLSLYTMMTPTHASLGGALD------GMLINVTDPVAYQSQTRRGFVGG 54 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 ++ R+ ++NV ++S P ++AGCGGID + GSFSFI+ +QL + I NA G F Sbjct: 55 NVAMRSPIRNVNIVSFDPPRMSAGCGGIDLFAGSFSFIDSDQLIAVFRSIAQNALGLIFM 114 Query: 121 LALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGE 180 AL P++++ +Q +N ++ ++C A+ + +F + + A Sbjct: 115 RALAAIDPKLQSLVSTIQSKLQSLNQLSSNTCAIAKQAVDTVFNSVERASTSAESGAA-- 172 Query: 181 SNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKN-------INIMWNALSKN---- 229 + + G KAS K K + N++W+ ++ N Sbjct: 173 ------FFEAIAGGVGDLFESQEAVKASPKAKIKQACEAGSIEFCGNVVWDLMADNRVGE 226 Query: 230 ----RMFDG--NKELKEFVMTLTGSLVFGPNGEI----TPLSARTTDRSIIRAMMEG--- 276 F G K E VMT+TG+ ++ P TP A+ + + + G Sbjct: 227 LLGGGYFAGLSTKYAAELVMTMTGTAIYDPESAPSASETPRMAQRPGKIDLHDLKTGRSS 286 Query: 277 GTAKI-SHCNDS---DKCL---KVVADTPVTISRDNAL--------KSQITKLLASIQNK 321 G KI C+ + D C +V D T+ N + + ++ + Sbjct: 287 GAQKIKYSCSSAPARDGCRSMDEVAWDWEGTVGYTNRMLFGSIDGTSTTADSIVGKMSPA 346 Query: 322 AVSDTPLDDKEKGFISSTTIPVFKYLVDPQ-MLGVSNSMIYQLTDYIGYDILLQYIQELI 380 D L ++ F+++T++P +++ Q G ++++ Q I ++ + + ++ Sbjct: 347 CAVDCTLSATQQSFVNATSVPFISMMLEVQSQEGAASAVAAQAAPLIAEELHIVLSEAVL 406 Query: 381 QQARAMVATGN---YDEAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQ 437 + AR +++T + + + N +R + ++ Q + AL R ++ Sbjct: 407 RAARQVLSTKGSTTIPPEIHDRVRELGNQYSRIVTNRKANAQ-EFVALDEYVRTIARRDP 465 Query: 438 QLSARMLSR 446 + R Sbjct: 466 SILTFTTPR 474 >UniRef50_Q8L263 Pilus biogenesis protein n=2 Tax=Enterobacteriaceae RepID=Q8L263_PROVU Length = 483 Score = 260 bits (665), Expect = 6e-68, Method: Composition-based stats. Identities = 99/409 (24%), Positives = 174/409 (42%), Gaps = 32/409 (7%) Query: 1 MMPRIKPLLVLCAALLTVTPAASAD-VNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYG 59 M I LVL A LL+ T A+AD +N +N F G SNTT+PG + G Sbjct: 14 MKRSILSSLVLMAGLLSFTSNANADSINDQLNNMF---GSMSNTTRPGDYHSVTRDGYTG 70 Query: 60 GSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFF 119 G R +++++ +++ LP GCGGID + GSFSFIN ++ + ++ I +NA+G F Sbjct: 71 GGFTLRNKLRSLTPVNIQLPSAAGGCGGIDLFGGSFSFINADEFVQMLRNIAANASGLAF 130 Query: 120 DLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQG-IIGGLFPRTQVSQQKVCQDIA 178 LAL + A +Q + +N + +SCQ A+G ++ ++ V ++ Sbjct: 131 QLALNAMDAVLDNAISRMQAVIQQMNDLTANSCQLAKGLLVDTAAAFGSEAKASVSAQLS 190 Query: 179 GESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSK----NRMFDG 234 + +D + G G KS + K + N+MW L+ N+ Sbjct: 191 SDG--LSDQFDAFMGGMNGSKSSPAK-KEDAGKRVACKDYGNLMWCLLNNGQFTNQFLGS 247 Query: 235 NKELKEFVMTLTGSLVFGPN----------GEITPLSARTTDRSIIRAMMEGGTA-KISH 283 + KEF+M++TG+ + N G L A + A++ G TA I Sbjct: 248 TDQQKEFIMSITGTYIVPKNISTDDTGNLIGGAPILIAPLDTSDALEALVNGNTAFDIYK 307 Query: 284 CNDSDKCLKVVADTPVTISRDNALKSQITKLLAS--IQNKAVSDTPLDDKEKG---FISS 338 C D++ C T L +I + + + V+ TPL + F +S Sbjct: 308 CTDTESCANP----QTTTLAITGLAQKIIQFFDAEGYLSDVVAGTPLTTSQLQKALFFNS 363 Query: 339 TTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMV 387 + + ++ + + ++ + Y QY+++++ A Sbjct: 364 IGASSNASSMAKYDINLATAYVKEIAPILAYSAANQYLRDMLTAAATSA 412 >UniRef50_B7XGS6 Putative pilus assembly protein n=2 Tax=Pseudomonas RepID=B7XGS6_PSEPU Length = 466 Score = 255 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 188/449 (41%), Gaps = 42/449 (9%) Query: 3 PRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSL 62 +IKP+ + A + V A A++ +N+ F+ + N T PG ++ G GGS+ Sbjct: 1 MKIKPIALAVALM--VPFGAHANIQQQVNEMFSGM---INVTSPGAYKTATRGVITGGSV 55 Query: 63 YARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAA----GYF 118 R ++ LIS+T P GCGGI+ Y GSFSFINGE+ ++ + SNAA G+ Sbjct: 56 VLRNRISTANLISITPPSAKGGCGGINLYSGSFSFINGEEFVALMRNVASNAAGIVSGFA 115 Query: 119 FDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIA 178 F+LAL + L +N M +SCQ A G++ + S A Sbjct: 116 FELALDAMDAQTGGVIRNLANKIQALNQMFSNSCQLASGLVTNAKKAYEESTDFKSAMTA 175 Query: 179 GESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKN-INIMWNALSKNR----MFD 233 SN+ +D+ ++ K DS ++ + K +N N++W A+ K+ + Sbjct: 176 FGSNVSSDFFTAKS-----TKEDSPANRIAASGKAVQCENTGNVLWCAMMKSGLQSQILF 230 Query: 234 GNKELKEFVMTLTGSLVF--------GPNGEITPLSARTTDRSIIRAMMEGGT---AKIS 282 G+ E EF+M++ GS G N P+ T + + ++EG T K+ Sbjct: 231 GSDENAEFIMSMVGSYNVSLTNDASGGKNFAAHPMPKLITGEGL-KILVEGSTNLDVKVY 289 Query: 283 HCNDSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIP 342 C+ D T++ L+++I L +QN + L+ G ++ Sbjct: 290 QCDQDDP--DCSEPNIRTLTSFKGLETRI---LEDLQN----NGILERFANGTATAADGN 340 Query: 343 VFKYLVDPQMLGVSNSMIYQLTDY-IGYDILLQYIQELIQQARAMVATGNYDEAVIGHIN 401 YL +GV+ I Q GYD L Q+ +++ A + G + Sbjct: 341 RIAYLAS-SRVGVNLMKITQKAGAQSGYDYLNQFAKKIAADASMSLIYQLLGHTEKGLTS 399 Query: 402 DNMNDATRQIAAFQSQVQVQQDALLVVDR 430 NM DA + I ++ D Sbjct: 400 LNMADAGKVIEDLRATKGELMDEYRSYIE 428 >UniRef50_Q4HPA7 Putative uncharacterized protein n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HPA7_CAMUP Length = 468 Score = 253 bits (646), Expect = 9e-66, Method: Composition-based stats. Identities = 103/464 (22%), Positives = 186/464 (40%), Gaps = 43/464 (9%) Query: 11 LCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV-K 69 + +L+ A +N + F G +N G ++ QA G GS R Sbjct: 6 VALSLILSLCLQGASLNDTLKNF---DGSLTN-ENAGYYKTQARGLYSLGSARVRFGGGS 61 Query: 70 NVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPE 129 V ++ P I+AGCGGID G FS++N E + +K+I S A + F++AL T + Sbjct: 62 TVVPFNVRAPSISAGCGGIDMVFGGFSYLNFEFIVEKLKKIASAAPAFAFNIALSTLCKD 121 Query: 130 IKTAKDFLQKMASDINSMNLSSCQAAQGIIG-GLFPRTQVSQQKVCQDIAGESNIFADWA 188 +T L+K+A+ INSMN +CQ +Q + G V + Q + D Sbjct: 122 CQTIMSELEKIANTINSMNFDTCQISQSSVNWGARQLGIVKNSNLAQGVDDSWLKIGDKM 181 Query: 189 ASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSK------NRMFDGNKELKEFV 242 S+ VG ++S+ + +D + T +M +L K N + KE + Sbjct: 182 PSQ---IVGDFTNSMNNLFNDGGE---TVKEYLMQGSLLKKTMEVYNPIISSGKEFEYLT 235 Query: 243 MTLTGSL----VFGPNGEITP------LSARTTDRSIIRAMMEGGTAKISHCNDSDK--C 290 L G + V G N + + R ++ GG K S ++ Sbjct: 236 RALIGDVVGETVEGSNPKTQEPFSLKVYVGKLDIRDFKEVLLNGGEVKGSKVEYTENGGT 295 Query: 291 LKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDP 350 +K V + I D LK I + I N V++ L + FI+S IP+++ L Sbjct: 296 VKDVRFSDENIKFDKGLKYIIKDKITEIYNAMVANRSLSADQLKFINSVPIPLYRILNVA 355 Query: 351 QMLGV--SNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNY-----------DEAVI 397 + + + ++++ I I+ I L+ M+A+ EA I Sbjct: 356 VLADTDGQSMDLEKISETIALQIINVLISTLLTDMSNMIASYKEQKGSKVIQNDDQEAKI 415 Query: 398 GHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSA 441 + +N + ++ ++ ++L ++ + + ++L Sbjct: 416 RVLEENARKVKTLLTEEINKQNIEWSSVLKTNKMWNEIERELYG 459 >UniRef50_D2U124 Conjugative transfer pilus assembly protein TraH (Fragment) n=1 Tax=Arsenophonus nasoniae RepID=D2U124_9ENTR Length = 429 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 90/436 (20%), Positives = 179/436 (41%), Gaps = 32/436 (7%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 M + L+L L T + + ++NS +N+ F G SN+T G +Q GG Sbjct: 1 MKKTFLGLMLVVILATPSITYADNINSQLNEMF---GSMSNSTGSGSYQSVTRDGYIGGG 57 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 R Q++ + I+++ P I+AGC GID + GSFSFIN ++ + ++ I +N+ G F L Sbjct: 58 FVVRNQLRTISPINISTPKISAGCSGIDFFSGSFSFINADEFVQLLRNIAANSVGLAFQL 117 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGI-IGGLFPRTQVSQQKVCQDIAGE 180 A+ + LQ + +N + +SCQ ++GI + ++ ++ V +A E Sbjct: 118 AINAMDSVLGGEISKLQALIQKLNEYSANSCQLSKGILVDMASAFSENAKTAVGNTLASE 177 Query: 181 SNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNR----MFDGNK 236 I + + + + G+ V+ T N+MW AL++ Sbjct: 178 GIIDSIESIASEPM---GRKPVVQTAEKAGKITPCTHYGNLMWCALNRGGFNSNFMGSEI 234 Query: 237 ELKEFVMTLTGSLVF-----GPNGE-------ITPLSARTTDRSIIRAMMEGGTAKISHC 284 E KE VM++ G ++ +GE TP+ S+++ + +I C Sbjct: 235 EQKELVMSMVGMVIVEKPTKNTSGEMPFNHTVATPIPMNEIYDSLMKGTKDNPNFRIYGC 294 Query: 285 -NDSDKCLKVVADTPVTISRDNALKSQITK--LLASIQNKAVSDTPLDDKEKGFISSTTI 341 +D+D C +N L I N S+ L ++ Sbjct: 295 GSDTDICAHPSPKQIKIDGLENIFLKLFDDGFLENYISNAKTSNALLQKAYLFNVNGAVT 354 Query: 342 PVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVA--TGNYDEAVIGH 399 ++ + + Q + + I Y+ + Y+ ++ A + + D+ ++ + Sbjct: 355 NGYQLI-EGQDTTRALHYYRSIAPIISYEAVYGYLNAMLNVAEMSLGKMIQSNDDPLMAY 413 Query: 400 IN---DNMNDATRQIA 412 + + +A ++++ Sbjct: 414 TKIQIEKIQEAKKELS 429 >UniRef50_Q19ND6 Pilus assembly protein n=8 Tax=Enterobacteriaceae RepID=Q19ND6_ECOK1 Length = 492 Score = 240 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 100/447 (22%), Positives = 178/447 (39%), Gaps = 30/447 (6%) Query: 4 RIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLY 63 K LL L ++ A +A+ ++ M FN + +T P + GGS+ Sbjct: 29 NFKKLL-LSLSVCAAILAPTANADNAMRNIFNGMMT---STSPATFSTATRTGIVGGSMS 84 Query: 64 ARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLAL 123 RT N L+SM+ P + GC GID +LGSFS ING+QL + + I AA Y F++A+ Sbjct: 85 YRTTNVNTNLVSMSFPKASVGCNGIDVFLGSFSMINGDQLVQVARGIAQGAAIYAFNVAV 144 Query: 124 QTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIG---GLFPRTQVSQQKVCQDIAGE 180 + + +Q +N SC A + G + S I G Sbjct: 145 SAICADCAATINDIQNKLQALNKFAKDSCNATYSFLSENVGTPSQFANSVSSGPASILGS 204 Query: 181 -SNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIM-WNALSKNRMFDG---- 234 + + D+ +S S V+ K ++ E+ + N+ M + + K M G Sbjct: 205 INGLIPDFGSSMTKSPEAVTS-QVKAKDPEEFAEKFSGNLFYMSFMDIDKGTMNIGGVTE 263 Query: 235 --NKELKEFVMTLTGSLV--FGPNGEITPLSARTTDRSIIRAMME---GGTAKISHCN-- 285 +L E +M+L G+++ + GE + R + ++ +M GG+ K+ C+ Sbjct: 264 LSGYKLAEQLMSLVGTVIINWDSKGEKAGMEVRPSTMTVTDYIMGPPAGGSIKMLKCSPA 323 Query: 286 ---DSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIP 342 S + + + + V LK I+ LL ++Q K ++D + D E IS IP Sbjct: 324 PDPSSPRKAQCLVMSEVNDGGFKGLKDTISDLLLNVQKKIINDVRVSDDELRIISYIGIP 383 Query: 343 VFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHIND 402 + Q Y I + +++Q A ++T + + D Sbjct: 384 --TIIDSLQTFEAPEG--YAYIQDISTIAATSLVINMLRQVEAKISTMSIPSESLSGKRD 439 Query: 403 NMNDATRQIAAFQSQVQVQQDALLVVD 429 ++N T ++ + + Sbjct: 440 DLNRLTDNLSKQVKAAYELSHSQVGTS 466 >UniRef50_A4JTN5 TraH family protein n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JTN5_BURVG Length = 483 Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 101/478 (21%), Positives = 189/478 (39%), Gaps = 53/478 (11%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 M R K +++L + + +V +++A+ + + + F SN+T P + Q+ G GG Sbjct: 1 MKMRFKRVILLMSLVCSVGMSSTANAG--LQDALDGM-FMSNSTTPDSFTNQSRGGLVGG 57 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 R ++N+ LIS P ++AGCGGID + GSFSFIN +QL +QI +NA G F Sbjct: 58 GASVRMPIRNINLISFDPPRLSAGCGGIDLFGGSFSFINADQLVALFRQIAANAVGVAFK 117 Query: 121 LALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQ---QKVCQDI 177 A+ P + Q + +NSM ++C A I+ + + V + Sbjct: 118 AAIDAINPALGKLMQDFQNKIAALNSMMKNTCALATTIMDKTGVSGAIRSFVDENVSSET 177 Query: 178 AGESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALS--KNRMFDGN 235 +S + D + + +++V KE + N+ W AL+ + GN Sbjct: 178 GSKSGMLTDMFSGID--SFLSNANTVTRNVQKSGKE--PELGNLTWMALNTTQAGQMLGN 233 Query: 236 KEL--------KEFVMTLTGSLVFGPNGEITPLSARTT----------DRSIIRAMMEG- 276 + E VM+L G++V GP ++ + + + +G Sbjct: 234 PQTGETDANGANEIVMSLIGTVVNGPENSSDTTASDGSVAVDNGRYWAPTIRLLDLKDGN 293 Query: 277 --GTAKIS--HCNDSDKCLKVVADTPVTISRDNALKSQITKLL-----------ASIQNK 321 G + C D K + + +S + + +L SI K Sbjct: 294 MSGNKPMYALRCADGYDLNKCMKISKQNLSF-GGVSGYVNLMLFGDAAGRSISTDSIVGK 352 Query: 322 AV----SDTPLDDKEKGFISSTTIPVFKYLVDPQML-GVSNSMIYQLTDYIGYDILLQYI 376 V + +K FI + + PV + Q + G + M + ++ L+Y Sbjct: 353 LVSCSGNACDFTSAQKTFIGNISAPVLGLMKKVQSMPGAAAQMAVLTAPIVTDELTLKYA 412 Query: 377 QELIQQARAMVATGNYDE-AVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMS 433 + + A+A + Y + I ++ + Q+ S + +A + + +S Sbjct: 413 ESALVAAQAAFSGTTYTKDEKISSAERDLLNEVIQLRTSSSADFEKLNAAIAYSKAIS 470 >UniRef50_A2SNL1 Sex pilus assembly protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNL1_METPP Length = 481 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 93/450 (20%), Positives = 164/450 (36%), Gaps = 62/450 (13%) Query: 20 PAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLP 79 A A + ++ F SN+T P + Q+ G GGS+ RT V+N+ L++ P Sbjct: 21 SPAHAGLQDALDGMF-----MSNSTAPQAFSSQSRGGFVGGSVAMRTPVRNINLVAFDPP 75 Query: 80 DINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQK 139 + AGCGGID + GSFSFIN +QL +QI +N+ G F A+ P + Q Sbjct: 76 RLAAGCGGIDMFGGSFSFINADQLVALFRQIAANSVGLAFKAAIDYINPALGKQMQEFQA 135 Query: 140 MASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASRQGCTVGGK 199 +N ++C A ++ F + V A + G T Sbjct: 136 KMQALNENMRNTCAIANQVVKS-FSDPSARKDMVDGATAAAEAAKGGFDDLWSGMTSFFT 194 Query: 200 SDSVRDKASDKDKERVTKNINIMWNAL--SKNRMFDGNKELK---------EFVMTLTGS 248 + + + +D + N +W AL S + + G+ E +M+L G+ Sbjct: 195 TPNSATRTADAG-GYCAECGNPVWKALVSSNSGVLLGDPTTSTDSNANRTNEIIMSLMGT 253 Query: 249 LVF---------------GPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKV 293 ++ G + P T + G KI C+D + Sbjct: 254 VIMSTTKADTTTTGGVTQKDTGTVKPY--LLTLFDLRDGSSSGKPFKIWTCSDGYAKHQC 311 Query: 294 VADTPVTISRDNALKSQITKLLASIQNKAVSDTP------------------LDDKEKGF 335 T ++ D +K + K+L + S P +K F Sbjct: 312 TQLTETAVTFD-GMKGYVNKMLFGYADGLASGVPTAGSIIGKLESCSTTSCGFTQAQKDF 370 Query: 336 ISSTTIPVFKYLVDPQML-GVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYD- 393 ++S P + Q + G S + +L D I +I ++Y + ++ R G + Sbjct: 371 LNSVQTPTLALVRKVQAVPGASQHVATRLVDQIANEIAVKYGEAAVRAIRMSFTEGKFPK 430 Query: 394 -----EAVIGHINDNMNDATRQIAAFQSQV 418 EA + + +++ ++ Q Sbjct: 431 PPEIVEAEKQRLAE-LSELRQENTKLTEQT 459 >UniRef50_C4S402 Pilus assembly protein n=2 Tax=Yersinia RepID=C4S402_YERBE Length = 462 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 76/467 (16%), Positives = 171/467 (36%), Gaps = 49/467 (10%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 M IK +++L L +T +A+ ++ +++F+ + + P ++ Q GY G Sbjct: 1 MINIKKIVILTLTSLYIT---AANADNWADKWFDNAVYDT----PSSFESQKRGYYTMGG 53 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 AR I+++ P ++ GCGGIDA+LG FSF++ + L ++ M A FD+ Sbjct: 54 FSARNNSSTDYPITISPPKLSVGCGGIDAFLGGFSFLDPDYLVEKAQRAMQAAPYVAFDM 113 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGES 181 AL+T E ++++ + +N + L+ C A+ I + + + + ++ G Sbjct: 114 ALKTMCKECADTLGKIEQITNFLNGIQLNECALAKPIATAAITQDAEALKGLWTEMTGTK 173 Query: 182 NI--FAD--WAASRQGCTVGGKSDSVRDK----ASDKDKERVTKNINIMWNALSKNRMFD 233 ++ +D W S + K + + + ++ +I+ A K + + Sbjct: 174 SLDEASDRLWTESTSKIKANDNKPTQDLKSMIEGCPAEFKDLMQHGSIVERAAQKVGLGN 233 Query: 234 GNKELKEFVMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCND--SDKCL 291 + + G + + + S + +D + + Sbjct: 234 ----YADTIRGYLGDVWIESK-TADRIPVAVSIPSCPQNQK-------YSLDDMLTGRSF 281 Query: 292 KVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQ 351 + S ++ + + + NK + L E FI+ST +PV+ L Sbjct: 282 VKTINKQCVPSSSKPVRDIVFAKMQKVLNKMKAGQELGTDEVKFINSTNLPVYSILKQAI 341 Query: 352 MLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNY-------DE---------- 394 + M+ L + +G + +L + ++ N D Sbjct: 342 TSKQDDVMLNVLAELVGLNYSYYIFSDLYRNTQSAFDAVNEMMSSPLSDPNNAKKPCRMD 401 Query: 395 ---AVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQ 438 + D + A ++ + + ++ + R+Q Sbjct: 402 LFAPALSKFGDLIQQARDSSVKVEATYNSRLQSYMLNSGFIETFREQ 448 >UniRef50_Q2LU06 Pilus assembly protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU06_SYNAS Length = 488 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 81/454 (17%), Positives = 166/454 (36%), Gaps = 39/454 (8%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +K ++VL L ++P + M + + T PG ++GQ GY GGS A Sbjct: 9 LKSIVVLVIIALLLSPLGP---DGPMAGWVDDWLQQKTETSPGYFEGQKRGYFTGGSFSA 65 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R Q N L + P + AGCGGID +LG FS++N E L +++IM A FD+AL Sbjct: 66 RWQQGNDYLFTAMPPKVKAGCGGIDVFLGGFSYLNFEYLVTKLQRIMQAAPAAAFDIALN 125 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIF 184 L+ + + +N++ L C+A + ++ + P + + +AG F Sbjct: 126 VLCEPCSKTIKSLEAITNTLNNLQLDECKAGRALVATMVPPSLAETKDKQAKLAGIQGDF 185 Query: 185 ------ADWAASRQGCTVGGKSDSVRDKASD------KDKERVTKNINIMWNALSKNRMF 232 D S T + V + ++ + +++ N +K Sbjct: 186 LQSSGVNDLWKSINDQTSANANKPVTNMKQALAGCPQDIRDVFGTSGSVINNIAAKTGF- 244 Query: 233 DGNKELKEFVMTLTGSLVFGPNGEITPLSARTTDRS-----IIRAMMEGGTAKISHCNDS 287 N+ + + G + G+ T +++G + Sbjct: 245 -NNQSYLDMLRGFVGDVYIIDAGDAGFQVGHTPPCDQNRYASFDNLLDG---SVYARTAG 300 Query: 288 DKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYL 347 C ++ L + + + I K + L D++ F++++ + + L Sbjct: 301 GACAQIT-------DSSADLTNYVRTKMTRIAGKIKAKQALSDEDNAFVNASPLSIGLVL 353 Query: 348 VDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDA 407 +S+I L+D Q + +L + ++ + A Sbjct: 354 KAAVGTNQESSIISTLSDVTAKAYAFQLLSDLYTKVWNIM-------EKARSLAQAQPGA 406 Query: 408 TRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSA 441 + +Q ++++ A+ + + + +S Sbjct: 407 VQGAQEYQCKIEMLSGAIDGTAEMQARIVEMVSG 440 >UniRef50_A7H3H2 Putative TraG n=1 Tax=Campylobacter jejuni subsp. doylei 269.97 RepID=A7H3H2_CAMJD Length = 488 Score = 197 bits (500), Expect = 8e-49, Method: Composition-based stats. Identities = 96/480 (20%), Positives = 190/480 (39%), Gaps = 50/480 (10%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 + R+ + CA LL A +A+++S + N LG + + G ++ Q +G+ GG Sbjct: 4 LKKRVVISAIACAFLL--PSALNANLSSFIQ---NNLGSSITSENSGYYKSQVSGFISGG 58 Query: 61 SLYARTQV-KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFF 119 S R + ++ S+T P N GC GID G FS++N E L + +K+I S A Y F Sbjct: 59 SSRIRWGGGETIRPFSVTAPSFNVGCSGIDMIFGGFSYLNFEYLVKKLKKIASAAPSYAF 118 Query: 120 DLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGI---IGGLFPRTQVSQQKVCQD 176 +AL T + +T D L+K+A+ INSMN +CQ G + S Q Sbjct: 119 QMALSTLCKDCQTIMDELEKIANAINSMNFDTCQMTTNWTNKFGKMLSSNAESGQNDSWL 178 Query: 177 IAGESNIFADWAASRQGCTVGGK--SDSVRDKASDKDKERVTKNINIMWNALSKNRM--- 231 + + + + + D++ + + ++ K +I+ + K + Sbjct: 179 SSFAKGMEGTAQTVQNFVKEANAFVNGTTPDESGETNAAKILKQGSIIQKVIEKGKASFF 238 Query: 232 --FDGNKELKEFVMTLTGSLVFGPN-------------GEITPLSARTTDRSIIRAM--M 274 G + ++ + + G LV ++ + + A+ Sbjct: 239 AEAFGEDQYEDILRGVFGDLVAYTEKSTSVTSKEMSDPEKVMLIGPTLNTDKFLEALWNK 298 Query: 275 EGGTAKI------SHCNDSDKCL---KVVADTPVTISRDNALKSQITKLLASIQNKAVSD 325 G I + + L V T VTI +D ++S + + +I K + Sbjct: 299 NGENKSITLEFTAYTISKDENGLYQEPVGKKTKVTIDKD--IRSLLIEKFKAIVAKIKAK 356 Query: 326 TPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQ-AR 384 + LDD +K I++ +PV L ++ + +++ ++ ++ EL + Sbjct: 357 SALDDADKNLINAAPLPVADILNIEASTELNG---DAVHEFVALLMVDAFVNELFNEFVT 413 Query: 385 AMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQD----ALLVVDRQMSYMRQQLS 440 + D D++ +A Q + A++ ++Q+ +R+ +S Sbjct: 414 NINTVQGLDPKFSSDHKDDLAKFNAAVAKVQETTRTLLSENAQAIIRDNQQVDSIRKIIS 473 >UniRef50_Q1NGS0 Putative uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGS0_9SPHN Length = 523 Score = 197 bits (500), Expect = 9e-49, Method: Composition-based stats. Identities = 88/465 (18%), Positives = 171/465 (36%), Gaps = 31/465 (6%) Query: 7 PLLVLCAALLTVT-PAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYAR 65 P+L A L T AA A S +F+ + + T PG ++ Q GY G + R Sbjct: 57 PVLSAIALLSTCGLTAAPAHAQSWAEHWFDNVTY----TSPGSFEDQTRGYVTAGGMSGR 112 Query: 66 TQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQT 125 V + L S+TLP + AGCGGID +LG SF++ + L + ++ I+ A F L+T Sbjct: 113 IDVHSDYLTSLTLPKVKAGCGGIDMFLGGMSFLDPDYLVQKLESILQAAPAVAFQYLLET 172 Query: 126 TVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQ--QKVCQDIAGESNI 183 ++ ++ + +NS+ ++ C+ A ++ +S +++ + + Sbjct: 173 LDEKMGNIISKMEAATNFLNSIQVNDCRLANRMVQIAKGDDNMSGIIEEMTGYKSVKEGY 232 Query: 184 FADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVM 243 + SR+ G S + K + + +I + L+ G + + Sbjct: 233 AKSYQQSREKIQANGNSPTEDLKDALANCPAEVTDIFRTGSLLAHAASRVGASDWAGVMR 292 Query: 244 TLTGSLV--FGPNGEITPLSARTT----DRSIIRAMMEGGTAKISHCNDSDKCLKVVADT 297 G + + ++ +A D + G + Sbjct: 293 ARVGDVYMRWDATDKVPLFAAIPACAAQDTESSDDFLSGRVMR-------RALAMPPTAA 345 Query: 298 PVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFI-SSTTIPVFKYLVDPQMLGVS 356 T + + + +I K + L +E+ F+ + T+PV++ L V Sbjct: 346 DCTQDSGRGALALTRERMTAIAEKIRTRAALTAEERQFVANVRTLPVYRMLEWGVRQDVV 405 Query: 357 NSMIYQLTDYIGYDILLQYIQELIQQARAMV---ATGNYDEAVIGHINDNMNDATRQIAA 413 NS+I + + + Q + +L + + G + N+ Sbjct: 406 NSVIGDTDELVALTLAYQMLNDLSRSIEFALFNAERGTNAAGASDGASANICQTR----I 461 Query: 414 FQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGSTL 458 ++ +D V RQ + MRQ A + Q N G + L Sbjct: 462 LTKGIEQLRDLREEVLRQRAQMRQSYLAALS---QANLSTGYAGL 503 >UniRef50_C1SHD2 Conjugative relaxosome accessory transposon protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHD2_9BACT Length = 453 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 93/465 (20%), Positives = 184/465 (39%), Gaps = 51/465 (10%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 + + VL AL+ +TP A A+ ++ +F+ A+++ V+ Q G+A GS Sbjct: 2 FRTINVLLIALI-MTPLAHAN---WVDDWFD----ANSSANASVYISQERGFATMGSFQG 53 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R + K+ L+++ P ++ GCGGID ++G FSF+N + L ++I+ A FDLAL Sbjct: 54 RLKTKSDYLMTVAPPKLSVGCGGIDIFMGGFSFLNPDYLVDKAERILRAAPYVAFDLALN 113 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLF--------PRTQVSQQKVCQD 176 KD + + + +N + + C+AA+G++ V Q+ + Q Sbjct: 114 EFCTSCSAIKDRAENIINALNGLQIDECKAAKGLVVSANHLIHGREDQAVDVLQKNMVQG 173 Query: 177 IAGESNIFADWAASRQGCTVGGKSDSV-RDKASDKDKERVTKNINIMWNALSKNRMFDGN 235 + +F D + +V S + KE + K+ +I+ SK M N Sbjct: 174 LDT---LFTDAKKDVEDKPGANFKKAVDNSGMSAELKEELKKSGSILDRIGSKVGM---N 227 Query: 236 KELKEFVMTLTGSLVFG-PNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVV 294 + L G + + I D + + ++EG +S + S C + Sbjct: 228 TTQIRQIRALIGDVQVNLTDNAINAFYYPGCDEATYKKLIEG--KPLSKSSYSSGCAESS 285 Query: 295 ADTPVTISRDNALKSQITKLLASIQNKAVS--DTPLDDKEKGFISSTTIPVFKYLVDPQM 352 L ++ LL SI +K + +T L +EK F+ T PV L + Sbjct: 286 GSN---------LTDEVQNLLQSISDKITTNKNTSLSAEEKNFVGITPYPVKSTLNTASL 336 Query: 353 LGVSNSM--IYQLTDYIGYDILLQYIQELIQQARAMVATGNY-----DEAVIGHINDNMN 405 G + + + ++ ++ + D + ++ ++ Sbjct: 337 YGDNQVAVIRDTMLQPTLHGYAFAIFSNILVNSKTSIEEYKALVDSGDGKLTKQLSAALD 396 Query: 406 DATRQIAAFQSQVQVQQ-------DALLVVDRQMSYMRQQLSARM 443 + ++ A S+ + + LL + + M+Q + + Sbjct: 397 ELLKKTADKGSEARESYLATISDTENLLAILERYGNMKQVIDDTL 441 >UniRef50_A0R7T1 Putative uncharacterized protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7T1_PELPD Length = 495 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 87/468 (18%), Positives = 180/468 (38%), Gaps = 36/468 (7%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 I+ V A +L P + + + + + P +QG GY GGS Sbjct: 5 KTTIRRAAVCVALMLLTLPTIARS------GWVDDWITSKQSASPSSFQGATRGYYTGGS 58 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 A + N L++++ P I +GCGGID ++G F+F++ + L + +++IMS A FD+ Sbjct: 59 FQAHWKDSNDYLMTVSTPHIKSGCGGIDTFMGGFAFMDVDYLVQKLQRIMSAAPAAAFDI 118 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLF-PRTQVSQQKVCQDIAGE 180 AL+ P+I L A +N++ L C+A++ ++ + P + + +K+ +++ Sbjct: 119 ALKAVSPQISGTLKELGAWADALNNLQLDDCKASKALVATIASPASNLLGEKMQSELSSA 178 Query: 181 SNIF------ADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWN-----ALSKN 229 + F D G + D AS + T +I L Sbjct: 179 QSDFWTSSGMGDLYTKVTGLFKSEQKDVASGNASTAPTIQATAQGSIAGCPQEIVDLYGQ 238 Query: 230 RMFDGNKELKEFVMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCND--- 286 F N K+ + T L+ G G++ + TT + + +++ C+D Sbjct: 239 GSFLDNIAAKKNLPTAYVELIRGFVGDVEIIPPATTGSTFVARVVDS-------CDDNAS 291 Query: 287 --------SDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISS 338 + A + +L + +L SI K + E+ F+ S Sbjct: 292 PVAFLMGHTSSKASPTASCQQITDTNRSLVTYSVNMLTSIITKMKTKVAYSLAEQDFLGS 351 Query: 339 TTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIG 398 V+ YL + ++ + +L + + + +L + + + + + Sbjct: 352 MPPGVYNYLRAAASTKMESATVAELANIASNALAYYMLSDLFIKIQQLPDAVAHINSSSV 411 Query: 399 HINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSR 446 + AT Q++ + L + ++M +++ +A M Sbjct: 412 GAKSGADPATCQLSLLNPTKAQFEVVLERIHQKMLEIKENYTAVMAES 459 >UniRef50_Q74BB6 Conserved domain protein n=3 Tax=Desulfuromonadales RepID=Q74BB6_GEOSL Length = 494 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 88/469 (18%), Positives = 173/469 (36%), Gaps = 65/469 (13%) Query: 31 NQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGIDA 90 + + + ++T P ++G GY GGS AR + L + +LP + +GCGGID Sbjct: 27 SGWVDDWVQQKSSTSPSYYEGSKRGYYTGGSFSARWANTDDHLFTASLPKLKSGCGGIDM 86 Query: 91 YLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNLS 150 +LG FSF+N + L + ++ I+S A FD+AL+T P++ L+ + +NS+ L+ Sbjct: 87 FLGGFSFLNVDYLVQKLQNILSAAPAAAFDIALKTLAPQVADTIKTLEAITDRLNSLQLN 146 Query: 151 SCQAAQGIIGGLF-PRTQVSQQKVCQDIAGESNIF-------------ADWAASRQGCTV 196 C+AA+ ++ P + V + ++ F + S Q Sbjct: 147 DCKAAKALVATSASPFSSVMSDSLKAEMKTAQTDFMVSSGAKDLYQDVSKLFESEQKANA 206 Query: 197 GGK---------SDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTG 247 G K S + + ++ + +++ N SK M N + + V G Sbjct: 207 GNKPGVPGTTQTSATSATAGCPAEVLQIFGDGSVLENLASKKGM---NSDYVKLVRGFIG 263 Query: 248 SLVFGPNGEI-----TPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTIS 302 +V + + + G + + C + Sbjct: 264 DVVIQSPATTGTTYQAQYVPPCDKNNSFDSFISGSA---QGRDTAGACADIT-------D 313 Query: 303 RDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQ 362 + L + + SI K S T L E+ F+ ST + V L + + +I + Sbjct: 314 ANKNLMVYVAGKMQSIAGKIKSKTALTADEEAFLKSTPLSVGLILKNATATNTESEVIGK 373 Query: 363 LTDYIG----YDILLQY------IQELIQQARAMV---ATGNYDEA-VIGHINDNMNDAT 408 L + Y +LL +QE+ + + +G E + + + M Sbjct: 374 LAELTARAYGYYMLLDLFGRAVQLQEMARNIMSTQKGNKSGASPETCQLALLGEGMQHIQ 433 Query: 409 R------QIAAFQSQVQ----VQQDALLVVDRQMSYMRQQLSARMLSRY 447 Q+ Q + +A+ ++ + M + + + R+ Sbjct: 434 TLEEKTLQLLTVAQQSYANAASEINAVEMIVQNMKKFDDTVFSELSDRF 482 >UniRef50_C5F065 Pilus assembly protein n=2 Tax=Helicobacter pullorum MIT 98-5489 RepID=C5F065_9HELI Length = 489 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 77/481 (16%), Positives = 163/481 (33%), Gaps = 55/481 (11%) Query: 4 RIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLY 63 + + ++V ++ A+A ++ ++ N L A G ++ QA G GS Sbjct: 5 KTRKIIVSVVLAAMLSNTANASLSDFVS---NSLDTAVLNQNAGYFKSQAGGLMSLGSSR 61 Query: 64 ARTQVKN--VQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 R N ++ P +N GC GID G FS++N + + +K+I + A + F + Sbjct: 62 IRFGGNNGAFTPFNVQAPSLNIGCSGIDMVFGGFSYLNFDNIVEKLKKITTAAPAFAFKI 121 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGI---IGGLFPRTQVSQQKVCQDIA 178 AL T + T L+K+A+ IN MN +C A I G +S + Sbjct: 122 ALSTLCKDCDTIMTELEKIANAINGMNFDTCTALNNWNDKITGSLASNGISTGIGAGVVG 181 Query: 179 --------GESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNR 230 G +D+ A G + D + K+ I+ ++ Sbjct: 182 DWLSGFGEGLGKSISDFTAYIHGQGGNNQGKDGSDAVKNVFKQGSLIKY-IVEGEKNRTG 240 Query: 231 MFDG--NKELKEFVMTLTGSLV--FGPNGEITP-----LSARTTDRSIIRAMMEGG---- 277 F + ++ + L G ++ NGE + + A+ +G Sbjct: 241 FFKTAMGADYEDILRDLLGDVIGFTEKNGEEVKFRKELIQGSLDITRFVEALYKGTAGEK 300 Query: 278 ---TAKISH-CNDSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEK 333 ++ + ++D + + + I + I K + L ++ Sbjct: 301 AELEIQVWNIVENNDGTIAPPTQGTPKKVKVDNFIDAIMDRINEIIIKGRGNNKLSADDQ 360 Query: 334 GFISSTTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYD 393 F+ S + P + + + + I ++ I + + + ++ G D Sbjct: 361 SFLGSLSQPTLQLI--NAAIANPDLNISAYSEVIAAQSFADLMNIVATEIEVEISKGIND 418 Query: 394 EAVIGH-------------------INDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSY 434 +++ +D QI Q+ + + R+++ Sbjct: 419 QSIAKREGGGVTALSSGDIGEITKTFSDRFTKLRNQINVVIKQINEKNQTAIHTLREINR 478 Query: 435 M 435 + Sbjct: 479 L 479 >UniRef50_A9AU08 TraH family protein n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AU08_BURM1 Length = 493 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 88/482 (18%), Positives = 177/482 (36%), Gaps = 75/482 (15%) Query: 3 PRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSL 62 R+K L++ A ++ V A A + +D+ +N+T PG + + G+ Sbjct: 1 MRVKKFLLIVA-MVVVPHLAFAGILADLGSMV-----MANSTAPGAMTTKDRVGVFMGAF 54 Query: 63 YARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLA 122 R+ +K V L++ P I+AGCGGID Y GSFSFIN +QL + +Q+ ++AAG F A Sbjct: 55 TMRSPIKAVNLVTFDPPRIDAGCGGIDLYGGSFSFINSQQLIQIFRQVAADAAGLAFKAA 114 Query: 123 LQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESN 182 +++ P + Q + ++N++ +SCQ A I+ + + SN Sbjct: 115 IKSISPSLDALITEFQTLLQNLNNLAKNSCQMAHLIVDPIDNALSNAVNGDGNTGGTNSN 174 Query: 183 IFADWAASRQGCTVGGKSDSVRDKASDKDK-----ERVTKNINIMWNALSKNRMFDGNKE 237 +F D + S A++ ++V + L+ DG+ + Sbjct: 175 MFTDVMGGLKSYLSDANSYFKNQSANNPKSGNPLVKKVVASGASSIMGLAGLPNVDGSSD 234 Query: 238 LKEFVMTLTGSLVFG--------------PNGEITPLSARTTDRSI------------IR 271 +L +++ S+R + +I + Sbjct: 235 NPSDPNSLNNMVLYALLGYNIDAAPCNSLNQAGQGIQSSRPANNTIGQVTCSGPAVMTLD 294 Query: 272 AMMEGG---------TAKISHCNDSDK----------CLK--------VVADTPVTISRD 304 +++GG ++ C + + C + V + V Sbjct: 295 DLVKGGGTGSLRPDVPLQLYRCANPNGSVFGGVDNQICTQMQVISFNYVGIEGWVNSMLF 354 Query: 305 NALKSQITKLLASIQNKA--VSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQ 362 ++ ++ SI + V+ T ++ F+ +P+ L ++ + Sbjct: 355 GSVDPALSVAGNSIVGQINSVNSTTFSAQQVAFMKQAGVPLAGLLSKTSNTATRVAIAQR 414 Query: 363 LTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQ 422 L +I + + + L + A + T YD D +I ++ +Q Sbjct: 415 LAPHIVDCVAARIGEVLYKGANLIQTTPGYDLTD---------DQKDRIKTLRTDYLAKQ 465 Query: 423 DA 424 +A Sbjct: 466 NA 467 >UniRef50_B7J815 Pilus assembly protein TraH, putative n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J815_ACIF2 Length = 559 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 73/313 (23%), Positives = 121/313 (38%), Gaps = 66/313 (21%) Query: 3 PRIKPLL--VLCAALLTVTPAASADVNSD---MNQFFNKLGFASN-TTQPGVWQGQAAGY 56 P +K + VL A L +V + + S M F N++ AS+ T G G Sbjct: 6 PELKKITKGVLVATLTSVLTSGFLNAESQALGMQNFVNQMFIASSGATAAGSGNGVT--- 62 Query: 57 AYGGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAG 116 GG ART + +I+ + PDI+AGCGGI+ + GSF FING++ +++I A G Sbjct: 63 YSGGYFEARTPLSGANVIAFSPPDISAGCGGINLFFGSFHFINGQEFMALLREIGQQALG 122 Query: 117 YFFDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGG-----LFPRTQVSQQ 171 Y F LA+ + ++K D+N+ ++CQ A+GI G + +++ Sbjct: 123 YAFQLAIDAMCHQCGALLSMIEKDIQDMNNALKNTCQLAKGIFNGDDMGDIAQVVNQTRR 182 Query: 172 KVCQDIAGESNIF-------------------ADWAASRQGCTVGGKSDSVRDKASDKDK 212 + + S+IF +W + G++ + Sbjct: 183 VMSSAVGDVSDIFKGTEPAMSSTIASDETSISTNWTELMTSVGLNGQAAKTPVPKTAPQA 242 Query: 213 ERVTKNINIMWNA------------LSKNRMFDGNKE--------------------LKE 240 + + N+ W A LS M E KE Sbjct: 243 YSLPQ-YNMFWKAINAADTQDMLLGLSDTTMVASVPEAVSTTNSNICATTTETTNACTKE 301 Query: 241 FVMTLTGSLVFGP 253 +M+L G+L+ P Sbjct: 302 ILMSLVGTLIILP 314 >UniRef50_A0L355 Putative uncharacterized protein n=1 Tax=Shewanella sp. ANA-3 RepID=A0L355_SHESA Length = 464 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 106/269 (39%), Gaps = 12/269 (4%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 M + + +LC L SA S +N ++++ AS + + G GS Sbjct: 1 MKKKVIVALLCCPL-------SATAASGLNNLWDQMLSAS--SGATSYSGAKRDGFSLGS 51 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 R + N +++++ P + + C GID + GS S I E+L + + I + A Y F L Sbjct: 52 ASVRIKTTNEKIVAVRAPYLQSSCKGIDFFGGSLSIIKREELVQMARSIAAAAPMYAFQL 111 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQV-SQQKVCQDIAGE 180 A+ P+ L K + +N C+ + +P QV S +K+ + Sbjct: 112 AMGMLCPDCNAILADLAKRLNALNDFISKDCEEWADLAEQQWPSLQVQSDRKMWKAYNDS 171 Query: 181 SNI-FADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKE-L 238 + F +A+S + D+ + + + ++ + Sbjct: 172 AGAWFDSFASSTVERSSIDSHSKAAQLTQAGDEMQFNSVYETFMQSETTVPTLSSDRHVV 231 Query: 239 KEFVMTLTGSLVFGPNGEITPLSARTTDR 267 + +MT+ G+ ++ + +T ++ +D Sbjct: 232 AQMLMTILGTEIYKFDSTLTASASAGSDA 260 >UniRef50_D1ZXJ6 Whole genome shotgun sequence assembly, contig_3001 n=1 Tax=Sordaria macrospora RepID=D1ZXJ6_SORMA Length = 237 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 90/224 (40%), Gaps = 13/224 (5%) Query: 243 MTLTGSLVFGPNGEITPLSA----RTTDRSIIRAMMEGGT---AKISHCNDSD--KCLKV 293 MT+ G++++ T + A +A+++G + C+ +D CLK Sbjct: 6 MTMVGTIIYDATRPRTAVGAFQFIAPASWDTYQALLDGTASAPTDVWQCDTTDDKGCLKP 65 Query: 294 VADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVD--PQ 351 T ++IS + AL++++ K + S+ K S+ L E + T+IP++K LV Sbjct: 66 T-PTKLSISTNEALRTRVLKAMDSMSGKIRSNAALSGDEIALLGMTSIPLYKILVVNEAA 124 Query: 352 MLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNY-DEAVIGHINDNMNDATRQ 410 +G+S L + + D+L+ + ++ A + ++ + Sbjct: 125 HMGLSGGDRATLAEMVAIDMLMSMLDRMLDTISQAQAGAKFVSTDEFKAWRAQVDSVKTE 184 Query: 411 IAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFG 454 ++ ++ Q V + +M L M + + FG Sbjct: 185 LSRRSEKMAGQISNTYRVIQYTQFMESTLKNTMSPQLSASLRFG 228 >UniRef50_B2I402 TraH family protein n=1 Tax=Acinetobacter baumannii ACICU RepID=B2I402_ACIBC Length = 293 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 99/283 (34%), Gaps = 23/283 (8%) Query: 195 TVGGKSDSVRDKASDKDKERVT--KNINIMWNALSKNRMFDGNKELKEFVMTLTGSLVF- 251 +++ D S++D + N+ W ALSK ++ K +M + G++V Sbjct: 10 GNSQQTNQTLDNLSNQDPNMKNHIPDGNLTWKALSKISALPTDQ--KYLIMAMVGTVVIT 67 Query: 252 -GPNGEITPLSARTTDRSIIRAMMEG-----GTAKISHCNDSDKCLKVVADTPVTISRDN 305 P + A I ++ + C D + + + ++ + Sbjct: 68 EDPTNGTPKIVAYPRRIDNISTLIGTSASSQAQFPVWRCVDGTREDECTSLVQDNLTTNE 127 Query: 306 ALKSQITKLLASIQNKAVSDTPLDDK--EKGFISSTTIPVFKYLVDPQMLG----VSNSM 359 S + + + + + P+ D FI+ T IP++K + G + Sbjct: 128 TFYSLVDEKMRLLADAISQRRPITDAGGIIQFINLTDIPIYKIIALNTRYGGDSTAAMMA 187 Query: 360 IYQLTDYIGYDILLQYIQ---ELIQQARAMVATGNYDEAV---IGHINDNMNDATRQIAA 413 + Q + I L Y + ++++ A + G D + I + ++ + Sbjct: 188 LDQYKELIAAKYALAYFEITSKMVEAALGNIIAGTADAVTAQEVTKIRETLDKTRADLNQ 247 Query: 414 FQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGS 456 + + + +++ +M + L + + + + F + Sbjct: 248 STQVAYARSNVSFNIAQEVQHMERTLHSNLAPALRQSIVFANT 290 >UniRef50_D2U4N5 Conjugal transfer pilus assembly protein n=1 Tax=Arsenophonus nasoniae RepID=D2U4N5_9ENTR Length = 106 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 75/104 (72%), Positives = 90/104 (86%) Query: 352 MLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQI 411 MLGVSNS++YQL DYIGYDILLQY+QELIQQAR M++ GNY + VI + +N+N AT I Sbjct: 1 MLGVSNSVLYQLADYIGYDILLQYMQELIQQARGMLSIGNYPQPVIDTLLENLNQATAMI 60 Query: 412 AAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGG 455 FQS+VQVQQDALLVVDRQ+SYMRQQ+S++ML+RYQNNYHF G Sbjct: 61 NQFQSRVQVQQDALLVVDRQISYMRQQVSSKMLTRYQNNYHFHG 104 >UniRef50_C0QUW1 Putative uncharacterized protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUW1_PERMH Length = 467 Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 76/491 (15%), Positives = 162/491 (32%), Gaps = 79/491 (16%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLY- 63 +K L+ A + AD+N+ +++ + PG + GS Sbjct: 1 MKKLIASLAFASLLIAPTKADINATLDKIVGSSYYL----PPGEIKSPTTNTYTLGSYSF 56 Query: 64 -ARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLA 122 R + N ++S+ P C G D G S +N + Q + + + + Sbjct: 57 RLRNDLLNRPVLSLRPPQATFSCSGADFDAGMLSMLNLNTFGDMLSQAGT-SVAWGIMIG 115 Query: 123 LQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESN 182 L ++P I A L + A + +SC I L S + Q S Sbjct: 116 LVYSLPGIGDAFQKLNEWARMFQQLISNSCMIGTQIGKNLGSSIWESGRTNAQGKGVASG 175 Query: 183 IFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDG---NKELK 239 + + A+++ D + T I + + +++G + E Sbjct: 176 SVSSFEAAQKEFI---------------DLIKTTGEIKKFFGTIPYGPLYEGGWTDTETA 220 Query: 240 EFVMTLTGSLVF-----------------GPNGEITPLSARTTDRSIIRAMMEGGTAKIS 282 + V +L G L + ++ T + ++ ++ G T +I Sbjct: 221 DLVASLFGVLEWRAVDTAGNDCTDTSCLKNAKIKVVYYPPLTNN---LQDIINGATMQIY 277 Query: 283 HCNDSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTP------------LDD 330 HCN T + ++ + ++ K V+ + Sbjct: 278 HCNWG------YDTNIGTFKCNGGVEVSNKDIPEGLRQKIVNRIDGIVDDIIDGTFMANP 331 Query: 331 KEKGFISSTTIP----VFKYLVDPQMLGVSN---SMIYQLTDYIGYDILLQYIQELIQQA 383 + +I S +P V YL + G ++ S +Y +++ I +L I Sbjct: 332 DDAQWIKSVPLPNFPEVINYLAILKKQGFTSQYNSALYGVSELISSMMLKVLIDNAYASL 391 Query: 384 RAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARM 443 + G Y + ++ A + I ++Q+ D + + Q +Y+ Q++++ Sbjct: 392 SS---IGRY--FTNKDMPKDLAGAQQNITKVKAQI----DDYIQKNIQSNYITIQVASQT 442 Query: 444 LSRYQNNYHFG 454 ++ G Sbjct: 443 YRSIKSAVEKG 453 >UniRef50_Q893U0 Flagellar cap protein fliD n=1 Tax=Clostridium tetani RepID=Q893U0_CLOTE Length = 556 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 82/218 (37%), Gaps = 25/218 (11%) Query: 134 KDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASRQG 193 + L K A + + + + I + F + Sbjct: 113 VNKLAKGAQAYKQLGTD--------VTNSNKLKDLGIETKDFTITVDGKDFKVKLDKGED 164 Query: 194 CTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTGSLVFGP 253 TVG S+++ + KE+++K +N+ ++ +SK + + + KE +M++TG +FG Sbjct: 165 STVGDLVSSIKNATTADGKEKLSKYVNVSFSEISKRMVIETKETGKEQIMSITGGSIFGT 224 Query: 254 -------NGEITPLSARTTDRSIIRA----MMEGGTAKISHCNDSDKC-LKVVADTPVTI 301 + EI ++ ++ A +++G + + ++ + L++ D T+ Sbjct: 225 DFSAKGEDAEIQVITPDGGTGTVNNAKNNFILDGISFNLKSISEKQEVNLEITKDVDKTV 284 Query: 302 SRDNALKSQITKLLASIQNKAVSD-----TPLDDKEKG 334 R + ++ I K PL + ++ Sbjct: 285 DRFKDFMKKYNNVVEKINGKLTEKKAYKYKPLTEAQRK 322 >UniRef50_A4V6R7 Putative exported protein n=2 Tax=Pseudomonas RepID=A4V6R7_PSEFS Length = 467 Score = 44.0 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 74/481 (15%), Positives = 152/481 (31%), Gaps = 58/481 (12%) Query: 1 MMPR-IKPLLVLC--AALLTVTPAASADVNSDMNQ--FFNKLG-----FASNTTQPGVWQ 50 M R IK +L L A + T T AAS D SD + + ++ F + V Sbjct: 3 MKSRYIKSILALTVSAVMSTNTLAASIDFGSDGSDSPWTRRMDDVTGLFGESVKGSAVND 62 Query: 51 GQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGE--QLQRFVK 108 G + + + ++ GC G++ ++G+ Q Q V+ Sbjct: 63 ANKGGSFSFDTFTPFQDQRTSVVNGYGATEVGVGCNGLNLST----VLDGQLGQYQEMVE 118 Query: 109 QIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQV 168 Q + NA L + P IK+ D L + ++ +C G+ Sbjct: 119 QFIQNAPALAIMY-LAYSQPTIKSVIDQLNSVGQFGLDLSNMTC-------SGVRSLADK 170 Query: 169 SQQKVCQDIAGESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIM------ 222 + + Q +A E++ D C G + K++ + N M Sbjct: 171 AYDEKKQTLA-EADCTVDEGYKSSKCMAGEGLTGSLLNQMGEFKQKTSDRANAMMGKVSS 229 Query: 223 -------WNALSKNRMFDG--------NKELKEFVMTLTG-SLVFGPNGEITPLSARTTD 266 WN+ G +++G S P L ++ Sbjct: 230 ATGGLVGWNSSVSGGTNKGAGTGSGTGTGGTGSVKASVSGKSCSNDPQDGSAGLVLAASE 289 Query: 267 RSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDT 326 GG N+ + + +S L ++ +L ++ + + Sbjct: 290 LGCDDIKKYGGLVPSYGFNNDAASVTPRTENIENLS--KTLTTEYMELYKAVYSADAASF 347 Query: 327 PLDDKEKGFISSTTIPV----FKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQ 382 K IS I V +Y+ + + I ++ + + ++I + Sbjct: 348 KNTQAYKDLISRADIVVSENEHQYMRNLARSSPA-MFISTERQLSTLGMMKE-LDDVISK 405 Query: 383 ARAMVATGNYDEAVIGHINDN-MNDATRQIAAFQSQVQVQQDALLVVDRQMSYMR--QQL 439 V++G ++ ++D ++ +A + Q Q + + + QQ+ Sbjct: 406 IEIGVSSGIANQPDNVILSDEVISRTKTSVAGLRQQYIALQARIKHDQERNKVLSSVQQV 465 Query: 440 S 440 + Sbjct: 466 T 466 >UniRef50_B3CSC5 Putative conjugative transfer protein TraH n=2 Tax=Orientia tsutsugamushi str. Ikeda RepID=B3CSC5_ORITI Length = 86 Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query: 290 CLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTT--IPVFKYL 347 C++ +TI + + + + L +++NK +T + E F+SS P++ Y+ Sbjct: 7 CIQ-RLQQNITILPEQSYAGKAKQQLTNLKNKFDHNTEFSNHEIAFLSSIGDIFPIYDYI 65 Query: 348 VDP 350 Sbjct: 66 TLE 68 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B6ICG8 TraH protein n=2 Tax=Enterobacteriaceae RepID=B6... 454 e-126 UniRef50_A4WGU0 TraH family protein n=2 Tax=Enterobacteriaceae R... 442 e-122 UniRef50_A3VN11 TraH n=1 Tax=Parvularcula bermudensis HTCC2503 R... 439 e-121 UniRef50_A7ZGS3 TraH protein n=4 Tax=Enterobacteriaceae RepID=A7... 422 e-116 UniRef50_Q2NDI0 Pilus assembly protein n=6 Tax=Sphingomonadales ... 413 e-114 UniRef50_A9L6A2 TraH family protein n=12 Tax=Gammaproteobacteria... 410 e-113 UniRef50_D0Z585 IncF plasmid conjugative transfer pilus assembly... 406 e-112 UniRef50_C5SIL6 TraH family protein n=1 Tax=Asticcacaulis excent... 404 e-111 UniRef50_Q5ZTT1 TraH n=1 Tax=Legionella pneumophila subsp. pneum... 404 e-111 UniRef50_Q3IUV3 TraH n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID... 399 e-109 UniRef50_A5VGS4 TraH family protein n=5 Tax=cellular organisms R... 399 e-109 UniRef50_D1RMN0 TraH pilus assembly protein n=2 Tax=Legionella R... 399 e-109 UniRef50_A5KZG8 Putative uncharacterized protein n=1 Tax=Vibrion... 386 e-106 UniRef50_A8QYR4 TraH protein n=2 Tax=Legionellaceae RepID=A8QYR4... 382 e-104 UniRef50_Q1N8Y9 Pilus assembly protein n=1 Tax=Sphingomonas sp. ... 380 e-104 UniRef50_UPI00016AD114 TraH family protein n=1 Tax=Burkholderia ... 380 e-104 UniRef50_C9NPT8 IncF plasmid conjugative transfer pilus assembly... 377 e-103 UniRef50_B4EQN3 Putative TraH conjugative transfer protein n=1 T... 374 e-102 UniRef50_Q6MB86 Putative F pilus assembly protein traH n=1 Tax=C... 370 e-101 UniRef50_Q0F376 Putative uncharacterized protein n=1 Tax=Maripro... 369 e-100 UniRef50_A0B4P9 TraH family protein n=5 Tax=Proteobacteria RepID... 358 3e-97 UniRef50_A1W643 TraH family protein n=5 Tax=Betaproteobacteria R... 355 1e-96 UniRef50_D0SGX6 TraH family protein n=1 Tax=Acinetobacter johnso... 355 3e-96 UniRef50_A1RH72 TraH family protein n=16 Tax=Gammaproteobacteria... 329 1e-88 UniRef50_C4NV64 TraH n=17 Tax=Gammaproteobacteria RepID=C4NV64_E... 319 2e-85 UniRef50_Q1NGS0 Putative uncharacterized protein n=1 Tax=Sphingo... 306 1e-81 UniRef50_Q1MY31 TraH n=1 Tax=Bermanella marisrubri RepID=Q1MY31_... 305 3e-81 UniRef50_Q1RJF7 F pilus assembly protein TraH n=31 Tax=Rickettsi... 304 4e-81 UniRef50_A0R7T1 Putative uncharacterized protein n=1 Tax=Pelobac... 301 3e-80 UniRef50_C4S402 Pilus assembly protein n=2 Tax=Yersinia RepID=C4... 298 2e-79 UniRef50_Q2LU06 Pilus assembly protein n=1 Tax=Syntrophus acidit... 293 8e-78 UniRef50_D2U124 Conjugative transfer pilus assembly protein TraH... 288 3e-76 UniRef50_Q4HPA7 Putative uncharacterized protein n=1 Tax=Campylo... 288 3e-76 UniRef50_A2SNL1 Sex pilus assembly protein n=1 Tax=Methylibium p... 285 2e-75 UniRef50_Q8L263 Pilus biogenesis protein n=2 Tax=Enterobacteriac... 285 3e-75 UniRef50_B4RLQ8 TraH n=13 Tax=Neisseria RepID=B4RLQ8_NEIG2 281 3e-74 UniRef50_Q5NX61 Sex pilus assembly protein n=1 Tax=Aromatoleum a... 281 4e-74 UniRef50_A4JTN5 TraH family protein n=1 Tax=Burkholderia vietnam... 277 5e-73 UniRef50_B7XGS6 Putative pilus assembly protein n=2 Tax=Pseudomo... 272 2e-71 UniRef50_C4Z010 Putative uncharacterized protein n=1 Tax=Rickett... 272 2e-71 UniRef50_A7H3H2 Putative TraG n=1 Tax=Campylobacter jejuni subsp... 271 3e-71 UniRef50_Q74BB6 Conserved domain protein n=3 Tax=Desulfuromonada... 266 2e-69 UniRef50_Q19ND6 Pilus assembly protein n=8 Tax=Enterobacteriacea... 264 4e-69 UniRef50_C1SHD2 Conjugative relaxosome accessory transposon prot... 263 1e-68 UniRef50_C5F065 Pilus assembly protein n=2 Tax=Helicobacter pull... 258 3e-67 UniRef50_A9AU08 TraH family protein n=1 Tax=Burkholderia multivo... 255 3e-66 UniRef50_C0QUW1 Putative uncharacterized protein n=1 Tax=Perseph... 216 2e-54 UniRef50_B7J815 Pilus assembly protein TraH, putative n=1 Tax=Ac... 187 7e-46 UniRef50_A0L355 Putative uncharacterized protein n=1 Tax=Shewane... 184 7e-45 UniRef50_B2I402 TraH family protein n=1 Tax=Acinetobacter bauman... 159 3e-37 UniRef50_D1ZXJ6 Whole genome shotgun sequence assembly, contig_3... 151 6e-35 UniRef50_D2U4N5 Conjugal transfer pilus assembly protein n=1 Tax... 93 3e-17 Sequences not found previously or not previously below threshold: UniRef50_A4V6R7 Putative exported protein n=2 Tax=Pseudomonas Re... 55 4e-06 UniRef50_Q8CP76 Extracellular matrix-binding protein ebh n=5 Tax... 42 0.055 >UniRef50_B6ICG8 TraH protein n=2 Tax=Enterobacteriaceae RepID=B6ICG8_ECOSE Length = 468 Score = 454 bits (1167), Expect = e-126, Method: Composition-based stats. Identities = 234/449 (52%), Positives = 327/449 (72%), Gaps = 2/449 (0%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 ++ + + C + A ADVN+D+N+FFNKLGF N T+ VWQGQAAGYA GG+L+ Sbjct: 9 LRRVTLSCLVAAVLALPAQADVNNDLNKFFNKLGFEGNATRAAVWQGQAAGYATGGNLFL 68 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R QV N+Q+ S T P I AGCGGIDAYLGSFSFIN EQ++RFVKQ+M NA GYFFDLALQ Sbjct: 69 RNQVNNLQIASFTPPHITAGCGGIDAYLGSFSFINSEQIERFVKQLMGNAVGYFFDLALQ 128 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIF 184 T VP +K+ KDF+QK+AS++N+MN+SSCQAAQGIIGGL+P+ V QK+CQDIAGE+N+F Sbjct: 129 TAVPGMKSVKDFMQKLASELNNMNISSCQAAQGIIGGLWPKNTVQSQKICQDIAGETNMF 188 Query: 185 ADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMT 244 +DWAASRQGCTVGG+ + V DKA + K++V +N N+MW L KN M +GN EL E VM Sbjct: 189 SDWAASRQGCTVGGQMNKVLDKAPENMKDQVMRNKNLMWEILKKNDMMNGNTELMELVMN 248 Query: 245 LTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTISRD 304 +TG+L+F GEI + + + +IRA+M GG A I C + CLK + VT+S++ Sbjct: 249 VTGTLIFDDKGEIQFIGPQANHQGLIRALMYGGQATIFGCTSTGDCLK-TRNRTVTVSQN 307 Query: 305 NALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLT 364 N+L ++ ++ +I +K VSD PL +EKGFI ST++P+ +YLVDPQML +S + L+ Sbjct: 308 NSLNQRVQNMIKNISDKLVSDDPLTSQEKGFIESTSVPILRYLVDPQMLNIS-TFYPSLS 366 Query: 365 DYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQDA 424 DYI YDILLQY+ EL+ QAR + N+ E + + +N ++A+RQ+ Q+QV V+ + Sbjct: 367 DYIAYDILLQYLNELLSQARVQAGSKNFPEEQMKMLRENFSEASRQLEGLQAQVDVKANT 426 Query: 425 LLVVDRQMSYMRQQLSARMLSRYQNNYHF 453 L+ ++++M Y+RQQ+S +++SRY+ N ++ Sbjct: 427 LMELEQRMGYLRQQVSTQLMSRYEQNLNY 455 >UniRef50_A4WGU0 TraH family protein n=2 Tax=Enterobacteriaceae RepID=A4WGU0_ENT38 Length = 454 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 241/453 (53%), Positives = 327/453 (72%), Gaps = 4/453 (0%) Query: 5 IKPLLVLCAALLTVTP---AASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 + L+ A++ A ADVN D+N FF LG++ N +Q WQGQAAGY GGS Sbjct: 1 MVKSLITAASIFMTGMAALPAQADVNGDLNGFFGSLGYSGNVSQAQAWQGQAAGYYSGGS 60 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 +Y R VKNVQLISM LP +NAGCGGIDAYLGSFS I+GE++QRFVKQIMSNAAGY FDL Sbjct: 61 VYLRNPVKNVQLISMQLPSLNAGCGGIDAYLGSFSMISGEEIQRFVKQIMSNAAGYAFDL 120 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGES 181 ALQT VPE+K AKDFLQK+ASD+NSMN+SSCQAAQGIIGGL+P TQVSQQK+CQDIAGE+ Sbjct: 121 ALQTMVPELKQAKDFLQKLASDVNSMNMSSCQAAQGIIGGLWPVTQVSQQKICQDIAGET 180 Query: 182 NIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEF 241 N+F+DWA+SRQGCTVGG+S+ V DKA D K++V KN N++W+ LSKN + ++ LKE Sbjct: 181 NMFSDWASSRQGCTVGGQSNKVTDKAGDDQKDQVLKNKNLIWDTLSKNGLLGNDRALKEL 240 Query: 242 VMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTI 301 VM+ GS++F NG++T L+ +R +I+ +M GGTAK+ C+++ CL V +TI Sbjct: 241 VMSTVGSIIFNNNGDVTILTPLVDNRDLIKVLMRGGTAKVYGCDEATLCLGPVVK-DLTI 299 Query: 302 SRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIY 361 S NAL + + L+ S+QNK V DT L ++EKGF+++T++PV KYL + Q +G+S + + Sbjct: 300 SESNALVTLVKNLMLSMQNKLVDDTALSNQEKGFVNTTSVPVLKYLTNAQSMGMSATYLL 359 Query: 362 QLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQ 421 Q+ D+I D+++QY+QEL++QA +A N+ E + DN+ A +A + Q Sbjct: 360 QVADFIAQDLMIQYLQELVKQASLSLAGKNFPEEAAAKLRDNIIHAQGLLADMKLQSAAD 419 Query: 422 QDALLVVDRQMSYMRQQLSARMLSRYQNNYHFG 454 Q+AL +DR M Y++QQ+S + YQ+NYH+G Sbjct: 420 QNALDGIDRNMQYLQQQVSTIVSGSYQSNYHWG 452 >UniRef50_A3VN11 TraH n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN11_9PROT Length = 472 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 138/470 (29%), Positives = 247/470 (52%), Gaps = 18/470 (3%) Query: 2 MPRIKPLLVLCAAL---LTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAY 58 M R L A+ L++ +A+ADVN++MNQF+N LG A+N T P ++GQ AGY Sbjct: 1 MRRFLKLPAAVASFVYGLSMPTSAAADVNAEMNQFWNDLGVAANVTGPSSFEGQRAGYYT 60 Query: 59 GGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYF 118 G++Y RT +++ +++ +P AGCGGID Y G FS++N +L F+K + +NAA + Sbjct: 61 FGNVYVRTPQRSLSPVNIQMPGYRAGCGGIDIYGGGFSYVNSAELVAFMKSVANNAASFA 120 Query: 119 FDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIA 178 F +AL+T P I LQ +A IN M ++SC++ Q + ++P++ + + +C+ A Sbjct: 121 FQVALETISPVIAEKVGELQSVAQRINQMAINSCESGQLAVAAVWPQSDQASRVICEASA 180 Query: 179 GESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKEL 238 ++ DW A+R GC G+ +V AS ++K + +NINI W+AL K+ + G++EL Sbjct: 181 SRRGLYPDWVAARHGCGSEGERSNVLAGASVEEKASIPQNINIAWDALKKHPVISGDREL 240 Query: 239 KEFVMTLTGSLVF------GPNGEITPLSARTTDRSIIRAMMEGGTAKISHC--NDSDKC 290 +F+MTL+G+ + L ++ D +I A ++GGT I C + D C Sbjct: 241 MQFLMTLSGTEILTAGADDDAAQSYQFLPSKMLDPGVISAFLDGGTIDIYECETDPDDLC 300 Query: 291 LKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDP 350 L VTI+ + L+++++++LA I K + T L E+ F++ T++PV+K + Sbjct: 301 LAPTTGGSVTIASSDGLRARVSQMLADIMGKVRTRTALTADEQAFLNVTSLPVYKMINVH 360 Query: 351 QMLG--VSNSMIYQLTDYIGYDILLQYIQ---ELIQQARAMVATGNYDEAVIGHINDNMN 405 ++ I + I D+L + E++ +A + +G D V + + Sbjct: 361 AAYEGVFADQTIQSYAEIIAIDLLYGLFEGYAEMLSEAGSTATSGARDSVVA--WKEQLT 418 Query: 406 DATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGG 455 + +Q + + + + V + + +QL+ R+ + Y F Sbjct: 419 RQREFLLQYQLENNARVEVIEQVIARTQAIERQLAGRLSKDLADAYQFSR 468 >UniRef50_A7ZGS3 TraH protein n=4 Tax=Enterobacteriaceae RepID=A7ZGS3_ECO24 Length = 501 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 219/455 (48%), Positives = 315/455 (69%), Gaps = 2/455 (0%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 M ++ + + +ASA + DMN FFN + +ASN T WQGQAA Y GG Sbjct: 47 MKTFLRQSFLSLLIGTALCTSASAGLQDDMNSFFNNMSYASNATSAKAWQGQAARYVTGG 106 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 S YART KN+QLIS++LP INAGCGGID YLGSFSFIN +Q+ FVKQ M+NAAGYFFD Sbjct: 107 SFYARTGNKNIQLISISLPSINAGCGGIDVYLGSFSFINSDQIMAFVKQTMANAAGYFFD 166 Query: 121 LALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGE 180 LAL+TTVPE+K AKDFLQKMA+D+N N+SSCQAA+ ++ + SQQ VCQ +AG+ Sbjct: 167 LALETTVPELKAAKDFLQKMAADLNRFNMSSCQAAKAMVDSVASLWGESQQNVCQSVAGQ 226 Query: 181 SNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKE 240 +N+F+DW +SRQGCT GGK +SV +KA+ +K++V K+IN+MW+ALS N N EL++ Sbjct: 227 NNVFSDWVSSRQGCTSGGKYESVTNKATGAEKDQVLKDINLMWDALS-NSTLSSNAELRQ 285 Query: 241 FVMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVT 300 F M+++GS++FG NGE+ LS+ +DRS++ AMM GG+AK+ C++ +KCL VT Sbjct: 286 FAMSISGSVIFGSNGEMRILSSLASDRSLLSAMMSGGSAKVYVCDNQNKCLSPSL-NNVT 344 Query: 301 ISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMI 360 IS +L + L SI+NKA++DTPL ++EK FI+ST+IP+ ++VD L VS S+ Sbjct: 345 ISESKSLIRMVRDTLTSIENKAITDTPLTEREKQFINSTSIPILSWIVDQSSLSVSQSLF 404 Query: 361 YQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQV 420 QLTDYI DI LQY++ +++ +AT +Y A + + + + DA + + + + +VQ+ Sbjct: 405 AQLTDYIAVDIYLQYLEAVMKVVNGSLATKDYPGANMNELKNGLADARQALNSLRMEVQI 464 Query: 421 QQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGG 455 +++AL+ +Q+ ++RQQ+S++M R NY F Sbjct: 465 KENALISAQQQIRFIRQQVSSKMSDRVLGNYQFSR 499 >UniRef50_Q2NDI0 Pilus assembly protein n=6 Tax=Sphingomonadales RepID=Q2NDI0_ERYLH Length = 478 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 116/470 (24%), Positives = 233/470 (49%), Gaps = 16/470 (3%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 M+ I+ + AA + +A+V M++F + +G A+N T P ++GQ+AGY G Sbjct: 1 MITSIRNAALTLAAASMIASPLAANVGDSMDRFMDDMGAAANVTGPTAFEGQSAGYYSLG 60 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 +++ R K + ++ LP AGCGGID + GSFSFIN ++ +K + +NA G+ F Sbjct: 61 NVWTRFPQKTTSIANLQLPRARAGCGGIDIFAGSFSFINASEMVALLKAVANNAVGFAFS 120 Query: 121 LALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGE 180 LA+ T PE + A +N+++++SC+ AQG++GGL+P+ ++ + +C+ I Sbjct: 121 LAIDTVCPECNKIMQEFSQKAQLMNNLSINSCEMAQGLVGGLWPKGDLADKAICEAIGNS 180 Query: 181 SNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTK-NINIMWNALSKNRMFDG----N 235 IF D+AA++ GC G+ S + A + N W+ L K+ F+ + Sbjct: 181 EGIFTDYAAAKHGCGTRGQRASTNEGAGADYADVNPGVARNYTWHVLKKSAFFNPGGTFD 240 Query: 236 KELKEFVMTLTGSLVF--GPNGEITPLSARTTD--RSIIRAMMEGG---TAKISHCNDSD 288 +EL E+ MTL G++++ + E D +++ A+++G T ++ C+++D Sbjct: 241 RELAEYAMTLIGTVIYVPPKDDEAGKFVPFAGDASSTLVSALLDGTQGQTVRVFRCDETD 300 Query: 289 KCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLV 348 CL + ++++ A++ ++ L+ ++ + +DT + + EK + ++P++K L Sbjct: 301 LCLNPTFE-QMSLANAKAIRPRVALLIGNMVDAIRADTAIGNAEKELLQVASVPLYKILT 359 Query: 349 DPQML--GVSNSMIYQLTDYIGYDILLQYIQELIQQA-RAMVATGNYDEAVIGHINDNMN 405 G+ L + D+L + ++ +A R+M + DEA + + Sbjct: 360 VQAAYGRGMPTDDRDTLAEIASIDLLYAILDRIVSEAGRSMASFIAADEAKLAIWRGQVA 419 Query: 406 DATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGG 455 + + Q+ Q + A++ + + + + L+A M + Sbjct: 420 EVRTGLVQRQATGQAKVSAIMQIIEKTAMIENALAASMSPSMSAALDWSR 469 >UniRef50_A9L6A2 TraH family protein n=12 Tax=Gammaproteobacteria RepID=A9L6A2_SHEB9 Length = 462 Score = 410 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 143/456 (31%), Positives = 248/456 (54%), Gaps = 8/456 (1%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 + LL + + L T A SA V+ +N FFN LG+ +N T PG ++GQ+A Y GG+L+ Sbjct: 7 TRTLLGVTISCLLTTHAHSAGVSGSLNDFFNGLGYGTNVTNPGSFKGQSANYYSGGNLFV 66 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R+ +++ QL+S+ +P I AGCGGID ++G FS IN + L + K I++NAA + DLALQ Sbjct: 67 RSPIRDAQLVSVQMPSIAAGCGGIDMFMGGFSHINSDALVQQGKAIIANAAPFAVDLALQ 126 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQK-VCQDIAGESNI 183 T P+IK KD L +A + +++SC++AQ + L V QK +C + ++N Sbjct: 127 TWAPQIKQIKDTLTAIADKYLNQSINSCESAQAGVSALAGFAGVGSQKYICATMGTQNNA 186 Query: 184 FADWAASRQGCTVGGKSDSVRDKAS--DKDKERVTKNINIMWNALSKNRMFDGNKELKEF 241 FADW + +Q C GG++++ D A K+ V KN NI+W A+ KN + L EF Sbjct: 187 FADWVSGQQECGAGGQANNQLDNAKKDPALKDMVRKNTNIVWAAILKNTFLASDPTLAEF 246 Query: 242 VMTLTGSLVFGPNGEITPLSARTT-DRSIIRAMMEGGTAKISHCNDS--DKCLKVVADTP 298 +M+++G+ ++ G + T + ++I +++EGG A+ C + D+CL T Sbjct: 247 LMSISGTYIYDATGNARGYGSLLTDNNNLINSLLEGGKAETYQCTNKAIDQCLAPTQQT- 305 Query: 299 VTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNS 358 +TI ++ L+ ++ LL I +K +D PL D +K + TT+P+ +L G++ Sbjct: 306 ITIQSNHGLQYRVDTLLRGIASKMQNDQPLTDNDKSLLEYTTLPIMTFLRTELEAGLTPQ 365 Query: 359 MIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQV 418 I + Y+Q ++ ++ + N D I I ++ +A R + ++ Sbjct: 366 T-NTYAKIISVQFITLYLQNMLSIVKSSITATNNDPKDIDRIERDIINANRFLEGLTAKA 424 Query: 419 QVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFG 454 Q + + + Q ++QQ++ M ++ + N +FG Sbjct: 425 QNEAVSQHQLIMQNQQIKQQITGAMSAKAKANLNFG 460 >UniRef50_D0Z585 IncF plasmid conjugative transfer pilus assembly protein TraH n=2 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z585_LISDA Length = 457 Score = 406 bits (1044), Expect = e-112, Method: Composition-based stats. Identities = 155/457 (33%), Positives = 245/457 (53%), Gaps = 10/457 (2%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +K L +L +L+ A V+SD+ FF+ L F N T P +QGQAA Y GGS Y Sbjct: 1 MKKLAILIPLMLSNPTV--AGVDSDLGSFFDGLTFEGNATLPQSYQGQAANYYTGGSAYI 58 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 RT VK +QL ++T+P+INAGCGGID + G FSFIN +QL K I+SNA + DLALQ Sbjct: 59 RTPVKQMQLATITVPEINAGCGGIDLFAGGFSFINSDQLVSMGKAIVSNAVPFAVDLALQ 118 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQK-VCQDIAGESNI 183 T P++K KD L+ +A +IN+++++SC+AAQ I L V ++ +C + ++N Sbjct: 119 TWAPQLKNVKDRLEAIAREINALSVNSCEAAQAGISALAGFAGVGEKNYICATMGTQNNS 178 Query: 184 FADWAASRQGCTVGGKSDSVRDKASDKD--KERVTKNINIMWNALSKNRMFDGNKELKEF 241 FADWAA++ GC ++ A++ K+ V N NI+W +L KN G+++L EF Sbjct: 179 FADWAAAKNGCNNEASANQQVKNATNDPKLKDFVAANRNIIWYSLHKNGFLSGDRQLAEF 238 Query: 242 VMTLTGSLVFGPNGEITPLSARTT-DRSIIRAMMEGGTAKISHCNDS--DKCLKVVADTP 298 M+L+G++V+ T + T ++I M +GG A C+ S + CLK T Sbjct: 239 FMSLSGTIVYDDKMSATRYPSLLTSSNNLIEVMTQGGEASYYRCDTSGQNGCLKPTQAT- 297 Query: 299 VTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVS-N 357 +TI++D ALK ++ LL SI K SD L + E F+ S ++PV K + G S Sbjct: 298 LTINQDKALKHRVAVLLRSIITKYRSDQGLSNNETQFLDSVSLPVLKMMTVSLESGYSLE 357 Query: 358 SMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQ 417 S I I D++ Y+Q+ ++ + + + + + + + A+ Q+ + Q Sbjct: 358 SSINAYAQVISTDLVTAYLQDALKVIQGALDSKGSNPEDVAALYIVIGQASEQMRLSRIQ 417 Query: 418 VQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFG 454 +A + R + Q++ + + N FG Sbjct: 418 ALQTLEAEQSIIRATMELEQRVEGSFSGQARQNLLFG 454 >UniRef50_C5SIL6 TraH family protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIL6_9CAUL Length = 461 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 136/463 (29%), Positives = 240/463 (51%), Gaps = 12/463 (2%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 M +K + LL TP A+ADV+ M+ F++ A+N + P V+QGQAAGY G Sbjct: 1 MKAHLKAGACIVLTLLAATP-ATADVDGAMDDFWSDSMTATNGSGPSVYQGQAAGYYTLG 59 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 + R N Q+ S+ +P + +GCGGID Y GSFSFIN +Q+ +K I NA G F Sbjct: 60 NYSYRAPQMNTQIASVGVPSVKSGCGGIDIYGGSFSFINSDQIVATMKAIAQNALGLLFQ 119 Query: 121 LALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGE 180 +A+ + + + K D+N +N++SC+AAQ ++ G R Q +Q K C ++ Sbjct: 120 MAVDSLSELLGSNIKDAFKKMQDLNGVNINSCEAAQNLVAGTVNRIQAAQAKSCTEVGTT 179 Query: 181 SNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKE 240 S +F+DWA +++ C VGG++++ A ++ N N+ W A+ K+ +F + EL Sbjct: 180 SGLFSDWAKAKEQCGVGGQAEATAATA---AADQKPVNRNVAWEAIQKHPLFRDDTELAL 236 Query: 241 FVMTLTGSLVFGPNGEIT---PLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVA-D 296 +MTLTG++V G NG +T + +I ++GGT ++ C +++ C +V Sbjct: 237 TMMTLTGTVVIGSNGGVTSIDVIPGDANKDGMITKFLDGGTYRVHQCANTE-CTQVTKYS 295 Query: 297 TPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQML--G 354 VT+ + +LK +++ +L SI NK S T L + EK F+ ++PV+K G Sbjct: 296 RDVTLDVNRSLKRRVSAMLVSIVNKIRSRTALSEDEKSFLGLVSLPVYKMASVQVAYQGG 355 Query: 355 VSNSMIYQLTDYIGYDILLQYI-QELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAA 413 + + + +D I D++L ++ Q + + A DE ++ +N+ +++ Sbjct: 356 FAAIEMERYSDVIALDLVLTWMSQNMAEMTAASQNLVGVDEKLLVDWQENVQSVRQELFQ 415 Query: 414 FQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGS 456 Q+ VQ + A+ + + + + + + SR + F + Sbjct: 416 RQALVQDRIVAMESIIAKTREVEKIIFSEGNSRIAQSLMFSST 458 >UniRef50_Q5ZTT1 TraH n=1 Tax=Legionella pneumophila subsp. pneumophila str. Philadelphia 1 RepID=Q5ZTT1_LEGPH Length = 461 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 140/459 (30%), Positives = 235/459 (51%), Gaps = 9/459 (1%) Query: 5 IKPLLVLCAA--LLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSL 62 +K +L+ C L + S + D+ +F L +N T+P +Q Q AG+ GG+L Sbjct: 1 MKKILLSCGLIGALGIGQVYSKSIGEDLTGYFKALNMGANVTEPHAYQAQRAGFYTGGNL 60 Query: 63 YARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLA 122 YAR+ V+N+Q++ ++ P ++AGCGGIDA LG FS I G++ F K I++N+ G F LA Sbjct: 61 YARSSVRNLQIMRLSWPKVSAGCGGIDATLGGFSHIKGKEFVDFTKNILNNSQGLAFQLA 120 Query: 123 LQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESN 182 L+ P + LQ +A+ +N N+SSC A+ + GL PRT+++QQ CQ I N Sbjct: 121 LEQATPLLGNVATKLQNVATWVNQTNISSCATAESAVLGLAPRTRIAQQHACQSIGQSKN 180 Query: 183 IFADWAASRQGCTVGGKS-DSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEF 241 +F+DWA +RQGC G + D R + E+V N N+ WNAL KN +F + EL + Sbjct: 181 LFSDWAEARQGCGKGSSNYDYDRVINENSSNEQVVDNTNVAWNALKKNGLFADDIELAQL 240 Query: 242 VMTLTGSLVFGPNGE---ITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTP 298 +MTL+G+L+ + E + LS+ ++ ++I A++ GG KI C++ KCL+ + Sbjct: 241 MMTLSGTLILTRDAEGVHVQRLSSLVSNNNLISALLRGGEVKIYQCDEKVKCLQPTLTSK 300 Query: 299 VTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQML--GVS 356 I + L+S++ L+ + +K + + KG I ST PV K + + Sbjct: 301 -NIDISHGLESKVRDLILDMASKIKDNVEQSEAAKGLIESTQYPVMKMVSVQMAFMKDSA 359 Query: 357 NSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQS 416 + ++ I DIL QY+ E +Q + Y EA++ ++ A R + + Sbjct: 360 VIDTTRYSEAIAIDILFQYLNENLQLVKQAAGALQYPEAIMKEFQTDLTQARRDLVQMEG 419 Query: 417 QVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGG 455 + + + ++ + Q L S + + Sbjct: 420 SAHQRMSMAMQMIQETQTIEQMLVGEFSSELTQSLSWAN 458 >UniRef50_Q3IUV3 TraH n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IUV3_RHOS4 Length = 465 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 226/456 (49%), Gaps = 9/456 (1%) Query: 8 LLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQ 67 +L + T A A + D+ F+ + G N T+P +QGQ GY GSLY RT+ Sbjct: 11 ILAGALSCATAGSAIPAGLGDDLKDFWERTGGGVNVTRPQAYQGQMGGYVTLGSLYMRTK 70 Query: 68 VKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTV 127 +N ++ LP + AGCGGID + GSFSFI+ E++ ++ IM NA+ + F+LAL++ Sbjct: 71 PRNSSMLQFQLPSVRAGCGGIDIFGGSFSFISKEEMIYLMEGIMQNASSFAFELALESLS 130 Query: 128 PEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADW 187 P + L+ + ++N+MN++SC+A Q ++G L+P+ + Q +CQ + G + FAD Sbjct: 131 PAVAEQVAKLRDLLQEVNAMNINSCEAGQMLVGSLWPKMDGASQHICQTVGGMNGTFADA 190 Query: 188 AASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTG 247 + R GC GK + A ++V +IN W A+ KN N + E M++TG Sbjct: 191 VSRRHGCGTEGKQNQTLRGAKGALADQVPVDINYAWRAVKKNGFLASNPTIGELFMSMTG 250 Query: 248 SLVF----GPNGEIT--PLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTI 301 +++ N ++ R ++ A+++GGT I CND++KCL VT+ Sbjct: 251 TIITTGAANDNEGPKHRTIAPRAFTPEMLVALVDGGTIPILKCNDTNKCLNPTWK-DVTL 309 Query: 302 SRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVS--NSM 359 +RD+A +++ K++ ++ + DT L ++ G I T+ PV++ L + + Sbjct: 310 ARDDAYFARVRKVVKALSDAIRDDTELTEEMIGIIGLTSAPVYETLKTARAYKYQFVDDE 369 Query: 360 IYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQ 419 I L++ + ++ + Y+ E + + + + ++ + + + + + Sbjct: 370 IALLSELVAVELAMLYMNETLTEMGRSASNVDTFGDIVREFQETIRNTQNGFGTLRREAA 429 Query: 420 VQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGG 455 + L ++ + L+A +++ + G Sbjct: 430 EKYADALSAIEKLQLHKAMLTAGSSTKFASMMGQGR 465 >UniRef50_A5VGS4 TraH family protein n=5 Tax=cellular organisms RepID=A5VGS4_SPHWW Length = 487 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 136/462 (29%), Positives = 228/462 (49%), Gaps = 16/462 (3%) Query: 8 LLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQ 67 +L A+ + A ADV MN FFN G A+N T P +QGQ+AGY G+++ R Sbjct: 20 AAILAASHFALVGVAHADVAGQMNSFFNDAGGAANVTGPSAFQGQSAGYYSMGNVWTRFP 79 Query: 68 VKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTV 127 K+V ++ LP AGCGGID + GSFSFIN ++ +K +NA G+ F LA+ + Sbjct: 80 QKSVSPFNLQLPSARAGCGGIDLFSGSFSFINASEIVAMLKATANNALGFAFKLAIDSVS 139 Query: 128 PEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADW 187 PEI D + A +N MN+SSC+ AQ ++GG++P+ ++ +C+ I IF+DW Sbjct: 140 PEIGKVMDEFSQKAQLLNQMNISSCETAQALVGGIWPQMDTTRSTICEAIGNSQGIFSDW 199 Query: 188 AASRQGCTVGGKSDSVRDKASDKDKER--VTKNINIMWNALSKNRMFDG-NKELKEFVMT 244 AASRQGC G + D+ SD + V + N W AL K F ++ EF+MT Sbjct: 200 AASRQGCNNGNQRDNTIAGNSDASMKDQLVGEPHNYTWEALKKAGKFGAFDQSFSEFIMT 259 Query: 245 LTGSLVFGPNGEI----TPLSARTTDRSIIRAMMEGG----TAKISHCNDSDKCLKVVAD 296 L G+++ P+ + + + +++ A+++G K+ CND + C +V Sbjct: 260 LVGTVITKPSDDPSVGGKVVMIGPAEDAVVTALLDGTADAPPVKLLKCND-ENCYEVGEQ 318 Query: 297 TPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDP--QMLG 354 T +++ +AL+ +I L+ S+ +K SDTPLD EK ++ T+P+FK L Sbjct: 319 T-LSVPASSALRPRIEALIQSMNDKIRSDTPLDAAEKQLLNIATVPIFKILSVQAYAHYS 377 Query: 355 VSNSMIYQLTDYIGYDILLQYIQELIQQARAM-VATGNYDEAVIGHINDNMNDATRQIAA 413 +S I +++ + D+L + ++ + V +D+A + A + A Sbjct: 378 LSPGEIQAMSEIVAVDLLTAMLDNMMDRVEQSQVHYQTFDQATAAQWKAQIAAARAKYAQ 437 Query: 414 FQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGG 455 ++ + + + + + L M + F Sbjct: 438 RDVKLNNKLQVTMQLINRSMMLESTLQNSMTPGMASALTFSR 479 >UniRef50_D1RMN0 TraH pilus assembly protein n=2 Tax=Legionella RepID=D1RMN0_LEGLO Length = 466 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 144/455 (31%), Positives = 242/455 (53%), Gaps = 7/455 (1%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 M K + A LL + A+ SD++ FFN LGF +N T +Q QAAGYA GS Sbjct: 9 MTLFKK--TVAALLLLGSSQLFANAESDLSHFFNNLGFDANVTGSHAYQTQAAGYAALGS 66 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 +YAR QV+ ++L + +P + +GCGGID + G FSFI +Q+ +F++ I+S AGY +L Sbjct: 67 VYARNQVRTIRLAHVDVPGMRSGCGGIDLFAGGFSFIKSDQIVKFMQNILSGGAGYALNL 126 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGES 181 AL+T +PEI A F+QK+A++IN N +SC+ + + ++PR + +QQ++C+D+ Sbjct: 127 ALETELPEIAHAMQFMQKLANEINGTNFNSCEMGENLSAAVWPRNRAAQQRLCEDLGRHQ 186 Query: 182 NIFADWAASRQGCTVGGKSDSVRDKASD--KDKERVTKNINIMWNALSKNRMFDGNKELK 239 F DWA +RQ C+ GG +DS+ +A + + K+RV N NI+W++L N+ + +L Sbjct: 187 GTFTDWAMARQKCSTGGDADSILSQAKNNPEYKDRVLINTNIVWDSLQINQFIAQDPKLA 246 Query: 240 EFVMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDS---DKCLKVVAD 296 E M+++G++VF G + + T++ I+A++ GG HC D+ CL + A Sbjct: 247 EVYMSISGTIVFNAKGALMTYPSLATNQDFIKALLYGGKLPSYHCTDTGPQSHCLSIDAT 306 Query: 297 TPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVS 356 + IS AL +Q+ +LL I + L DK+KG I T VF + Sbjct: 307 STQEISAKKALVAQVQELLLGIYDNIKMGKELSDKQKGLIELTQPAVFNLISANAQQNTG 366 Query: 357 NSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQS 416 Y+L + D+L QY+ + R ++ + N+ A + +A F + Sbjct: 367 IQGSYELAQSVATDLLAQYLSNSLDIIRGSLSGKELGAHNEERLYKNLQLAQQFVARFST 426 Query: 417 QVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNY 451 + + + +A L + + +Q + + + Y Sbjct: 427 ESRERFNAALQTNELIRNNVKQALSALTPTLRTAY 461 >UniRef50_A5KZG8 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZG8_9GAMM Length = 453 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 126/450 (28%), Positives = 234/450 (52%), Gaps = 7/450 (1%) Query: 10 VLCAALLTVTPAASAD-VNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV 68 L A L+++ + A + M+ F++ F N T P +QGQ+A Y GSL+ART + Sbjct: 5 TLLALLMSIAGSLHAGGLGDAMDSFWDDSSFNHNLTNPSAYQGQSATYYNAGSLFARTNI 64 Query: 69 KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVP 128 KN+QL ++T+P ++ GCGGIDA++G FS IN +QL F K +++NA + DLALQT P Sbjct: 65 KNIQLAAITMPSVSVGCGGIDAFMGGFSHINSDQLVSFGKAVIANAVPFAVDLALQTWAP 124 Query: 129 EIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRT-QVSQQKVCQDIAGESNIFADW 187 IK +D LQ +A + +++SCQ AQ I GL T +++ C + +SN FADW Sbjct: 125 SIKENRDKLQDIADQFLTTSMNSCQVAQSAIDGLAAFTDGEAKRHACATLGTQSNAFADW 184 Query: 188 AASRQGC-TVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLT 246 ++ C +V ++ D V ++N++W+AL K+ N+E+ EF+++LT Sbjct: 185 LEAQHECRSVRTNQSTLAGNTDDATAHAVKVSLNVVWDALMKSAYLQDNQEVAEFILSLT 244 Query: 247 GSLVFGPNGEITPLSA-RTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTISRDN 305 G++++ G + + A + + I A++ GG ++ C++++ CL ++ + +++S Sbjct: 245 GTVIYDAQGTPSYIPAMLVGNDTAINALLTGGDLEVYRCDNTETCLS-MSLSAISLSESQ 303 Query: 306 ALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLTD 365 A +++ + ++ SD P+ + EK F+ + IP+ L+D L + + Sbjct: 304 AFNAKVRHTVDTLYAHLQSDQPITESEKSFVELSDIPILAMLIDDAHLNLQP-ESHLYAQ 362 Query: 366 YIGYDILLQYIQELIQQARAMVATGNY-DEAVIGHINDNMNDATRQIAAFQSQVQVQQDA 424 I D+L Y+ ++ + + + + +N A + + + + + +A Sbjct: 363 NIAADLLHAYLNNMLMIVNQSMTNLASVNPTDVNRTLEGINRARDYLQTLRDRHKTKLNA 422 Query: 425 LLVVDRQMSYMRQQLSARMLSRYQNNYHFG 454 L + ++ R+ LS +N FG Sbjct: 423 YLALTERLKRKRKLLSQSASDATLSNLTFG 452 >UniRef50_A8QYR4 TraH protein n=2 Tax=Legionellaceae RepID=A8QYR4_9GAMM Length = 454 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 143/456 (31%), Positives = 255/456 (55%), Gaps = 14/456 (3%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +K + L L A+V++D++ FFN +G+ASN T P ++ QAAG+ GGSLYA Sbjct: 1 MKKV-FLTLCLFGFFSTVEANVSTDLDNFFNGMGYASNVTSPAAFESQAAGFFGGGSLYA 59 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R QV+ QL+ + LP AGCGGID + GS SF++ ++L K +M+NA Y D+ L Sbjct: 60 RNQVRQYQLVQLDLPSYRAGCGGIDLFTGSMSFLSEQKLVDLGKSVMTNAGVYAVDVMLA 119 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIA--GESN 182 +TVPE+K +D+LQ++ N +++SCQ +Q ++GG++P+T SQQK+C+D A G+ Sbjct: 120 STVPELKQVRDYLQQLEQMANQASINSCQLSQNMVGGIWPKTAESQQKICKDQAAMGKEG 179 Query: 183 IFADWAASRQGCTVGGKSDSVRDKASDKD-KERVTKNINIMWNALSKNRMFDGNKELKEF 241 +F+D+ +R C+ G + + + D+ K++V N N++W+ L + ++EL E Sbjct: 180 LFSDYVKARMACSGNGFDNVMNKASQDETRKKQVVLNKNLVWSLLQSKSFLNSDRELAEM 239 Query: 242 VMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGG----TAKISHCND---SDKCLKVV 294 VM+LTG+L+ G++T + + ++ +I A++ G TAKI C D ++C++V Sbjct: 240 VMSLTGTLIIDKEGKVTNVPSLASNADLINALVGTGNGVRTAKIWRCKDVTAGNQCMQVS 299 Query: 295 ADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDP--QM 352 +TI+ ++ L S++ +++ +I K D +E F+S T++PV K+L Sbjct: 300 L-QDITIAENSTLTSKVREIIRTINTKLAKDEKPTSREINFLSMTSLPVMKFLSVLNSTQ 358 Query: 353 LGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIA 412 + I + I +D+L Y+ EL+ + A + ++ I ++ AT ++ Sbjct: 359 YSSAAVDIEEYATLIAHDLLTHYLTELLAEVSNATAGSELNSDLVNDIQKRIHTATSKVT 418 Query: 413 AFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQ 448 A +V + L + M+ + +Q+++ M S Sbjct: 419 ALDPKVGRKLKEKLSLIEHMARIEKQVASTMNSTVS 454 >UniRef50_Q1N8Y9 Pilus assembly protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N8Y9_9SPHN Length = 449 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 129/443 (29%), Positives = 219/443 (49%), Gaps = 17/443 (3%) Query: 30 MNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGID 89 MN FF+ LG +N T PG +QGQ+AGY GG LY R +++ IS++LP ++AGCGGID Sbjct: 1 MNNFFSGLGGGANVTGPGAYQGQSAGYYTGGGLYTRAPQQDITPISISLPKVSAGCGGID 60 Query: 90 AYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNL 149 + G FSFIN +QL F+K +NA G+ F LA+ +I D +Q +A+ +N+ N+ Sbjct: 61 IFTGGFSFINSDQLVAFLKATANNAIGFAFKLAIDAISQQIGKVMDTMQDIANKVNTTNI 120 Query: 150 SSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASRQGCTVGGKSDSVRDKASD 209 SSC AA+ ++G ++ +C+ + + IF D+A +R GC K+ SV +D Sbjct: 121 SSCNAAKALVGTTASMLTSHKEYICETLGNDKGIFTDFAKARSGCGNENKAASVIQDNAD 180 Query: 210 KDKERVTK--NINIMWNALSKN--RMFDGNKELKEFVMTLTGSLVFGPNG----EITPLS 261 +KE N W A+ K N E EF+MTL G++VF G Sbjct: 181 PNKEGENALLPRNYTWWAIYKGKDASVAPNHEFAEFMMTLLGTVVFKGKGAGDEGEGSTR 240 Query: 262 ARTTDRSIIRAMMEGGTA---KISHCNDS--DKCLKVVADTPVTISRDNALKSQITKLLA 316 D + I+ M++G K+ CND D CL V V + + AL+ +I ++ Sbjct: 241 VIAPDLTAIKTMLDGDAVSGSKMLKCNDYTPDGCLDVS-QQAVPVDQAQALRPKIQAMII 299 Query: 317 SIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQ--MLGVSNSMIYQLTDYIGYDILLQ 374 S+++K ++DT L + E + T++P++K + +G+S S I L++ + D++L Sbjct: 300 SMRDKVLTDTALSNDEVALLGMTSVPLYKVVTVTATSSVGLSQSEIQTLSEVVAVDVVLS 359 Query: 375 YIQELIQQARAMVATGNYD-EAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMS 433 ++ ++Q + + N N++ + ++ V + + + Sbjct: 360 MVETMVQNVQKDMRENNAPISPAFTTWRSNLSTVNTAVGELRATVSQRFQTTQSIVERTQ 419 Query: 434 YMRQQLSARMLSRYQNNYHFGGS 456 + +QL + + F S Sbjct: 420 MLEKQLRNNLAPQLTAALGFSRS 442 >UniRef50_UPI00016AD114 TraH family protein n=1 Tax=Burkholderia thailandensis MSMB43 RepID=UPI00016AD114 Length = 482 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 121/472 (25%), Positives = 195/472 (41%), Gaps = 30/472 (6%) Query: 9 LVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV 68 V+ A L M FN + N T PG QGQ GGSL+ R Sbjct: 15 AVIAALSLACLVYTQPSAAMSMQDLFNSVNAMGNVTGPGALQGQTMDMFSGGSLFMRMPR 74 Query: 69 KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVP 128 + Q+ SMT P NAGCGGID ++G FSFIN EQ ++ I SNA GY F LA+Q P Sbjct: 75 RTYQVASMTPPSWNAGCGGIDLFMGGFSFINKEQFVAMLRNIGSNALGYGFKLAIQNLCP 134 Query: 129 EIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQV-SQQKVCQDIAGESNIFADW 187 L A +N +N+ SC AA+G++ P T +Q ++ +SNIF + Sbjct: 135 TCDNVMQALAATAQQVNRLNMDSCTAAKGLVNAALPDTWTRGKQDAAKNFGVDSNIFENI 194 Query: 188 AASRQG-CTVGGKSDSVRD--KASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMT 244 + K++ V D K S+ + V N++W AL E + +M+ Sbjct: 195 TDAWTNVMDDESKANDVIDSVKNSNPQAKDVLPTGNVVWKALKHVDGM--TDEDRMVLMS 252 Query: 245 LTGSLVFGPNGEI--TPLSARTTD---RSIIRAMMEGG---TAKISHCNDS--DKCLKVV 294 L GS++F + TP TD ++I + ++ G I C+ + D CL Sbjct: 253 LVGSMIFPTDSGTPQTPRPLMPTDIDVATLIGSAIDKGSKVNVPIWRCDTTTDDGCLHPY 312 Query: 295 ADTPVTISRDNALKSQITKLLASIQNKAVSDTPLD--DKEKGFISSTTIPVFKYLVDPQM 352 D T S + + + SI + + +P D D+ F+++T +PV+ + Sbjct: 313 PDNLSTDSFY----TMVENRMTSIADHIANRSPHDNVDQVIAFLNTTDLPVYSMIATGTR 368 Query: 353 LG---VSNSMIYQLTDYIGYDILLQYIQELIQQARAMVA-----TGNYDEAVIGHINDNM 404 G +S+ I D + YI+ ++ + + + I M Sbjct: 369 YGNTSLSDGAIATYVDLVAAKYAEVYIRRCVKDLQEAIGKYMALADATQADSLKEIQPQM 428 Query: 405 NDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGS 456 + T + Q + + ++ M + + A + +N+ FG S Sbjct: 429 DRVTNLAHQALMKAYSQTVSTHNIALELQAMERAVDANLSETLRNSLAFGKS 480 >UniRef50_C9NPT8 IncF plasmid conjugative transfer pilus assembly protein TraH n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NPT8_9VIBR Length = 460 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 126/433 (29%), Positives = 216/433 (49%), Gaps = 12/433 (2%) Query: 23 SADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDIN 82 +A + + F++ L + N + +QGQAA Y GGS+Y R +++ L ++TLP I Sbjct: 22 AAGLQDALEAFYDGLDYQENVSTAHAYQGQAAHYYTGGSVYVRAPSRSLSLGAVTLPSIK 81 Query: 83 AGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMAS 142 AGCGGIDA++G FS IN E+L F K +++NA + DLALQT P+IK +D LQ +A Sbjct: 82 AGCGGIDAFMGGFSHINSEELVHFGKAVVANALPFAVDLALQTWAPQIKQIRDHLQSVAD 141 Query: 143 DINSMNLSSCQAAQGIIGGLFPRTQ-VSQQKVCQDIAGESNIFADWAASRQGCTVGGKSD 201 + ++SSCQAA+ I GL SQ+ VC + +N F+DW A++QGC VGG++ Sbjct: 142 RWLNQSISSCQAAEAGISGLAAFAVPQSQKHVCATMGVRNNAFSDWVAAQQGCGVGGQAR 201 Query: 202 SVRDKA--SDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTGSLVFGPNGEITP 259 + +A S+ + N++W+AL + L EF+M+ TG++++ Sbjct: 202 TQLKQARQSEDLSALTKFHHNLVWSALMAVPQLASDPSLAEFLMSTTGTVIYDTTQHRHQ 261 Query: 260 LSARTTDRS-IIRAMMEGGTAKISHCND--SDKCLKVVADTPVTISRDNALKSQITKLLA 316 + T+ + ++ ++ GG ++ HC D + CL T+S +L+ ++ + L Sbjct: 262 YPSLVTESNRLVETLLTGGRVELYHCQDRSAKGCLAP-QRAWRTVSPAQSLQQRVQRTLI 320 Query: 317 SIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYI 376 S+ DTPL ++ + +T P+ G + + I D+L ++ Sbjct: 321 SLDLALREDTPLTTHQRALLEATRSPILAVFNSVHRAGSTPNFAAH-ARVIAVDLLETFM 379 Query: 377 QELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQ---QDALL-VVDRQM 432 Q ++ R V D + I ++ A F Q + Q Q+A + Q Sbjct: 380 QAMLSNVRQAVVRQPLDRDELTEIEQSIIRVQAFSARFTQQAREQLQWQNAFIAHYQYQD 439 Query: 433 SYMRQQLSARMLS 445 ++ RQ+L + + Sbjct: 440 AHQRQRLRRLLST 452 >UniRef50_B4EQN3 Putative TraH conjugative transfer protein n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4EQN3_BURCJ Length = 484 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 109/470 (23%), Positives = 192/470 (40%), Gaps = 28/470 (5%) Query: 9 LVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV 68 ++L + + M Q F+ + N T P QGQ GGSL+ R Sbjct: 19 VLLASVSIACLAYTQPAAAMSMQQLFDTVNAQGNYTSPAALQGQTLNMYSGGSLFMRMPK 78 Query: 69 KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVP 128 + QL S+T P NAGCGGID ++G FSFIN EQ ++ I SNA GY F LA+Q P Sbjct: 79 RTYQLSSVTPPSWNAGCGGIDLFMGGFSFINKEQFVAMLRNIGSNALGYGFKLAIQNLCP 138 Query: 129 EIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQV-SQQKVCQDIAGESNIFADW 187 LQ A IN +N+ SC+ A+G++ P T +Q ++ +SNIF + Sbjct: 139 TCDNVMQALQATAQQINRLNMDSCETAKGLVNAALPDTWTRGRQDAAKNFGVDSNIFENV 198 Query: 188 AASRQG-CTVGGKSDSVRD--KASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMT 244 + K+D V D K S+ + V N++W AL K E + +M+ Sbjct: 199 TDAWTNVMNDENKADDVIDQVKQSNPAAKDVLPTGNVVWKALKKIDGM--TDEERMVLMS 256 Query: 245 LTGSLVFGPNGEITPLSARTTDRSIIRAMMEGG------TAKISHCNDS--DKCLKVVAD 296 L GS++F G + ++ G I C+ + D CL +D Sbjct: 257 LVGSMIFPTQGNAQAPKPLMPTDIDVATLIGNGVDGDTINVPIWRCDTTTDDGCLNPYSD 316 Query: 297 TPVTISRDNALKSQITKLLASIQNKAVSDTPLDD--KEKGFISSTTIPVFKYLVDPQMLG 354 T + +S + + ++ + + +P DD + F+++T +P++ L Sbjct: 317 QLST----RSFRSMVMTKMNNMVDHIAARSPHDDVSQVIAFLNTTDLPIYAMLAAGTRYN 372 Query: 355 V---SNSMIYQLTDYIGYDILLQYIQELIQQARAMVA-----TGNYDEAVIGHINDNMND 406 ++S + D I YI+ + + + + + + + Sbjct: 373 NTQIADSTMGVYIDLIAAKYAETYIRRCTKDLQDAIGKYAALADSSQTQALSDLKPQLER 432 Query: 407 ATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGS 456 Q + + + +++ M++ + + + +++ FG S Sbjct: 433 IRNTAHEALMQAYTRTVSTHSLTTELAAMQRAVDSNLSETLRSSLAFGKS 482 >UniRef50_Q6MB86 Putative F pilus assembly protein traH n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB86_PARUW Length = 452 Score = 370 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 115/452 (25%), Positives = 234/452 (51%), Gaps = 16/452 (3%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +KPLL LL+ + AD+++D+ + ++L S+ + ++ Q AGY GG + Sbjct: 1 MKPLLFFI--LLSFSLTLRADLHNDLKSYLSELNTYSHVDKNEIYHSQRAGYMTGGGISI 58 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R + L ++LP +AGCGGID + G SFI+ +QL +K I S+A GY F L ++ Sbjct: 59 RNGASHTALAQVSLPKFDAGCGGIDIFTGGISFISHDQLIAALKNIASSAQGYAFMLGIE 118 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIF 184 T P I + ++ A+ INS+ ++SC+ A G++G ++P ++Q++C+ A Sbjct: 119 TVSPLIASTMKQMETWANAINSLGINSCEVATGLVGSVWPARTAAKQQICRS-AKNGGFA 177 Query: 185 ADWAASRQGCTVGGK-SDSVRDKASDKDKE-RVTKNINIMWNALSKNRMFD--GNKELKE 240 + + +R C G + +++ A D + + + N+ W A+ K+ N+++ E Sbjct: 178 SSFINARHQCADEGDYAKTMQSMAKDPLYDGMLLEEYNLTWKAVQKHPFLAKKENRKMAE 237 Query: 241 FVMTLTGSLVFGPNGE--ITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKV--VAD 296 +M+LTG+L+ + + P +R D S + ++EGGT ++ C + + Sbjct: 238 EIMSLTGTLIIRRDKSLVVEPWPSRIYDDSFLPILLEGGTTRVYQCTGGNAKQNCLALEM 297 Query: 297 TPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLG-- 354 +TI + A K +I + LA+IQ K ++DTPL +E +S + +P+FK + Sbjct: 298 KELTIPAEQAWKGRIKQALATIQQKILADTPLASEEIDLLSKSRLPLFKIVNVLTAYKRE 357 Query: 355 VSNSMIYQLTDYIGYDILLQYIQELIQQARAM---VATGNYDEAVIGHINDNMNDATRQI 411 VS +Y++ + +G ++L+QY++E+I R + G + + + + + Sbjct: 358 VSPISLYEVAEIVGNEMLIQYLREIIGTVRLAAIQLERGQMYDFDSQKFIEELERVEKVV 417 Query: 412 AAFQSQVQVQQDALLVVDRQMSYMRQQLSARM 443 + ++ + + +A + ++ + Q++++++ Sbjct: 418 SRYEERHYQRLEAENQLMLKIETLEQKIASQI 449 >UniRef50_Q0F376 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F376_9PROT Length = 463 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 125/467 (26%), Positives = 212/467 (45%), Gaps = 20/467 (4%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +K +L A+ + ASA +N DM F++ LG + N T GV+Q QA GY GG ++ Sbjct: 1 MKRILCALLAVACLATEASAGINQDMRNFYSSLGMSGNVTPAGVYQSQAGGYFTGGGMFI 60 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 + V++ QL+S+T P I+ GCGGID YLG FSFIN Q + ++ I +NA GY F+LALQ Sbjct: 61 KAPVRSYQLLSITPPSISEGCGGIDLYLGGFSFINKAQFTQMLRNIGNNAVGYAFNLALQ 120 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIF 184 T P+I + LQK+ IN +++SC AAQ + GL + K CQ IA I Sbjct: 121 TFAPQIYSTMQDLQKVIQKINQASINSCHAAQTAVNGLVGVLTENSAKGCQAIAMARGIV 180 Query: 185 ADWAASRQGCTVGGKSDSVRDKAS--DKDKERVTKNINIMWNALSKNRMFDGNKELKEFV 242 +D+ + + C GG ++ ++KE+ N++W + K + +KEF+ Sbjct: 181 SDYKDAERYCQSGGARRNIYYGMPLTPQEKEQQMARKNLLWTGMKKQTYTGLSASMKEFL 240 Query: 243 MTLTGSLVFGPNGEITPLSARTTDRSI-IRAMMEGG----TAKISHCNDSDKCLKVVADT 297 M+L G+ V P ++ + ++ G A++ C+ + CLK Sbjct: 241 MSLVGTYVIETAAGGQPDVRYLAPTALKLEQLVNGTGGVAAAEVYKCDTATDCLKP---A 297 Query: 298 PVTISRDNALKSQITKLLASIQNKAVSDT-----PLDDKEKGFISSTTIPVFKYLVDPQM 352 V I D + Q+ L I+ K S+ L + I + +PV K + Sbjct: 298 KVKIPLD-GYRKQVQAALDEIRTKLSSERFGAPAQLTANTRKLIGISRLPVLKMMTTAVA 356 Query: 353 LGVSNSMI--YQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQ 410 LG S ++ +L + + +D++ Y+ + A M + Sbjct: 357 LGPSVALQVENELVEPVAFDMVATYLDWAYKAAVDSARQVAATAPK-ELWGALMASVDSR 415 Query: 411 IAAFQS-QVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGS 456 F+ A + ++ ++ Q L + + +Q + + + Sbjct: 416 NREFREITKNRNFMAATEILQKARFLDQVLISNLTPHFQEVFQYARA 462 >UniRef50_A0B4P9 TraH family protein n=5 Tax=Proteobacteria RepID=A0B4P9_BURCH Length = 481 Score = 358 bits (918), Expect = 3e-97, Method: Composition-based stats. Identities = 113/480 (23%), Positives = 204/480 (42%), Gaps = 31/480 (6%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 M + ++ + AA+ + P + ++ M Q F+ + N + P QG+ GGS Sbjct: 1 MKPTRWIVAMTAAVFAIAPVCTQAMS--MQQVFDSINAMGNVSSPRALQGETMDMYSGGS 58 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 ++ RT K QL S+T P+ AGCGGID + G FSFIN EQ ++ I SNA GY F L Sbjct: 59 VFMRTPHKTYQLASVTAPEWGAGCGGIDLFTGGFSFINKEQFVALLRNIGSNALGYAFKL 118 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQ-KVCQDIAGE 180 ALQ P LQ +A D+N MN+ SCQAA+GI+ + P +Q + + Sbjct: 119 ALQNLCPTCDNVMQSLQAIARDVNRMNIDSCQAAEGIVNAVTPVAWKKEQANLADTLGPF 178 Query: 181 SNIFADWAASRQGCTVGGKSDSV---RDKASDKDKERVTKNINIMWNALSKNRMFDGNKE 237 +N+++D + + ASD + N+ W AL + + Sbjct: 179 TNLYSDMTDAWTNTGNSSAQAAQTINTATASDSNLAAKQPYGNVTWQALQQLPDLSTSD- 237 Query: 238 LKEFVMTLTGSLVFGPNG-----EITPLSARTTDRSIIRAMM-------EGGTAKISHCN 285 +EF+M+L G+++F E+ P+ ++ ++ G T ++ C+ Sbjct: 238 -REFLMSLVGTVIFPAPSDSGGTEVNPVFLPRIGSLTVQELVGNDPAANSGTTIQVYVCD 296 Query: 286 DSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFK 345 ++ KCL ++ ++ + +I +++ P D F+S T +PV+K Sbjct: 297 ETTKCLNPSVQEIGYTPFRTLVQQKLQVITDAIASRSAIPNPADTF--RFLSMTDLPVYK 354 Query: 346 YLVDPQMLG---VSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDE------AV 396 + L +++ ++ I YI + R +A + Sbjct: 355 MIAVGTRLNNSSLADQLLSTYQSLIAAKYAEAYIHGSAEDLRRAIARYGTVKSSTSLLDE 414 Query: 397 IGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGS 456 +N N++ + + Q Q + Q+ + + + A + S +N+ FG + Sbjct: 415 ATKLNTNIDTVESEARSVVMQAFSQTSNAWQLVEQLQSIERAVHANVSSSLRNSLAFGQT 474 >UniRef50_A1W643 TraH family protein n=5 Tax=Betaproteobacteria RepID=A1W643_ACISJ Length = 482 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 117/461 (25%), Positives = 207/461 (44%), Gaps = 29/461 (6%) Query: 13 AALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQ 72 +LL T + AD+NS++N FN LG N T PG ++GQ GGSL R+ K Q Sbjct: 20 LSLLCTTMPSRADLNSEVNDMFNNLGAIGNYTAPGAFRGQTYNTYTGGSLMMRSPNKVYQ 79 Query: 73 LISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKT 132 L ++ P AGCGGID + GSFS I+ ++ + ++ I + G F LAL+ P + Sbjct: 80 LAAIQFPSAKAGCGGIDVFGGSFSHISAQEFKNMLRNITAALPGIAFQLALEAVSPLLGG 139 Query: 133 AKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASRQ 192 + + + + IN+ ++SC+ A+ I+ S Q+ C D+A + + +D A+R+ Sbjct: 140 LTKWAKGLETWINNARINSCETAKAIVSTAAEAVGYSAQETCADLAIDMGLESDRDAARK 199 Query: 193 GCTVGGKS--DSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTGSLV 250 C S S R + + N+ W AL + + E +E +M++ G+++ Sbjct: 200 RCGTDRPSILSSARSSGDANVRNKAPFVGNLTWKALQYTGAYLDDAE-RELIMSMVGTII 258 Query: 251 FGPNGEITPLSARTTDRSIIRAMMEG-----GTAKISH---CNDSDKCLKVVADTPVTIS 302 + P + I ++ G GT + H CND C V +T + Sbjct: 259 YYPEESKRDPEPIAPTLTSISQLLYGQAAGSGTDVVQHLRRCNDYTNCDVVSLNTNYS-- 316 Query: 303 RDNALKSQITKLLASIQNKAVSDTPL--DDKEKGFISSTTIPVFKYLVDPQML---GVSN 357 +++ ++ SI +K + TP+ + E GF++ TT PV+K L + G+++ Sbjct: 317 -HVPFTAKVETMMRSISDKIATRTPIPNNSAEVGFVNQTTEPVYKMLSVGTSIPGSGLAD 375 Query: 358 SMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQ 417 S+I Q D I D +++ + R +A + D + D N ++ A Q Sbjct: 376 SLIGQYRDVIAADYAYVFLE---RNLRLGMAALSKDYTLQQTQRDQANQVRQRAQAMLLQ 432 Query: 418 VQVQQDALLV-------VDRQMSYMRQQLSARMLSRYQNNY 451 + +++ L V + + +QL M + Sbjct: 433 ISQEKNLLYQKVGSFRAVASHLEELERQLRTSMPQHVMDML 473 >UniRef50_D0SGX6 TraH family protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SGX6_ACIJO Length = 472 Score = 355 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 104/477 (21%), Positives = 191/477 (40%), Gaps = 32/477 (6%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 + + L L + + S + + M+ F+++ N QGQ Y GGS + Sbjct: 1 MNKIKALVLGLALGSASLSVNSSQSMSDVFDQINAYGNVAGGAAIQGQTMNYYTGGSAFV 60 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R L S+T P ++AGCGGID Y G FSFIN EQ K I S A GY F LA+Q Sbjct: 61 RIPKNTYNLASLTPPSVSAGCGGIDLYTGGFSFINKEQFIAMAKNIGSQALGYGFKLAIQ 120 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQ-DIAGESNI 183 P LQ IN MN+ SC+AA+GI+ + + ++ + NI Sbjct: 121 NLCPTCDNVMQALQSTTQAINRMNIDSCEAAKGIVNATTAQLDLKGREQSAINFGTFKNI 180 Query: 184 FADWAASRQGC-TVGGKSDSVRDKASDKD---KERVTKNINIMWNALSKNRMFDGNKELK 239 F+D + G GK++ V + D ++ N N+ W ALS+ + K Sbjct: 181 FSDATDAWSGIKGNAGKTEQVNQNLQNSDPNIRDHTPSNGNLTWKALSRAGL---TTTEK 237 Query: 240 EFVMTLTGSLVF----GPNGEITPLSARTTDRSIIRAMMEGGT----AKISHCNDSDK-- 289 + +M + G++ N + P + R + I + + G + C + Sbjct: 238 QMIMGMIGTVSITKDANNNNIVKPYARRVNN--ITDFIGKPGETSVKLPVWACGNGTGVD 295 Query: 290 -CLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLV 348 C ++ A + S +K ++ L+ +I N + + F++ T IPV+K + Sbjct: 296 ECTELTAAEQNSTSFYWMVKLKLDGLINAIAN--RQNITNSQELIDFVNVTDIPVYKLVA 353 Query: 349 DPQMLGVSNSMIYQLT---DYIGYDILLQYIQELIQQARAMV------ATGNYDEAVIGH 399 G ++ + L + + Y++ + + A + + Sbjct: 354 VNTRYGNGDAARFALNNYYELLAAKYAQAYVEMVARDVNAALDNYLAGTQSELYSQELKR 413 Query: 400 INDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGS 456 + + + +I + + + + +++ M + L + M + + +F S Sbjct: 414 LKEEIIQLRAEINTSIATTYQRTNVAYNIAMEVNQMERTLHSNMSQSLRQSVNFANS 470 >UniRef50_A1RH72 TraH family protein n=16 Tax=Gammaproteobacteria RepID=A1RH72_SHESW Length = 462 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 115/464 (24%), Positives = 197/464 (42%), Gaps = 40/464 (8%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 M + L+ CA + + + A + +MNQ F G +NTT PGV++ Q G GG Sbjct: 1 MKKVFRVSLIACA--IGFSSMSQASLQQEMNQLF---GSMTNTTAPGVFESQRRGVISGG 55 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 S+ R ++ N L+SM P AGCGGID + GS SF+N +Q + ++ + +NA GY F Sbjct: 56 SVVVRNRIMNENLVSMVPPSFQAGCGGIDMFAGSLSFVNADQFVQLLRSVAANAKGYAFQ 115 Query: 121 LALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGE 180 LAL + + LQK +N +SCQ AQG++ Q ++ Sbjct: 116 LALSAMCEKCSQHMETLQKKIQQLNEYFGNSCQMAQGVVNDTLAAFGKKGQTEASMLSSL 175 Query: 181 SNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNR----MFDGNK 236 D S GK+ + T N++W AL ++ G+ Sbjct: 176 KGA-GDVFTSWSE--SNGKNPYENASSVAASDVNKTIKGNLVWRALKRHSASSWFASGDD 232 Query: 237 ELKEFVMTLTGSLVFGP-------NGEITPLSARTTDRSIIRAMMEGGTAKISHCN--DS 287 E VM++TGS++ G G+ L+ ++ I ++ GG + C+ Sbjct: 233 RFLEAVMSVTGSIIVGDLANAADGQGKAPKLTRLNGNKVTIEHLIHGGNVAMYRCDTVTQ 292 Query: 288 DKCLKVVADTPVTISRDNALKSQITKLLAS-------IQNKAVSDTPLDDKEKGFISSTT 340 D CL VT++ L +Q+ LL I A + EK F++S Sbjct: 293 DGCLNPTITN-VTLT---GLSTQVENLLLGTGSSNGIIFKFARNTGAASTTEKAFMTSAP 348 Query: 341 IPVFKYLVDPQML--GVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIG 398 + + L G + S + +I ++ +++++ AR+ +G D A Sbjct: 349 ASIGGMIRTLSALNEGAARSFASRAAPFIAVEMARALVEDMLNAARS--TSGVEDHAYAK 406 Query: 399 HINDNMNDATRQIAA----FQSQVQVQQDALLVVDRQMSYMRQQ 438 + +++ A RQI Q + +Q+ L ++ + +R+Q Sbjct: 407 LLTEDLERARRQINEEYAALQRRYGSEQELLAHFNQVIQTIRKQ 450 >UniRef50_C4NV64 TraH n=17 Tax=Gammaproteobacteria RepID=C4NV64_ECOLX Length = 477 Score = 319 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 110/465 (23%), Positives = 206/465 (44%), Gaps = 35/465 (7%) Query: 1 MMPRIKPLLVLCAALLTVTPAASAD-VNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYG 59 + + L V + ++ T A +A+ + S M++ FN++ SNTT PGV++ Q G G Sbjct: 7 LKRSLLALSVAASLVMAPTGAIAANGLQSQMDKLFNEM---SNTTPPGVYESQRRGVLAG 63 Query: 60 GSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFF 119 G A+T++ + L+S P AGCGG+D + GS SFIN +Q+ + ++ + +NA GY F Sbjct: 64 GRFTAKTRIFDENLVSFAPPSWKAGCGGVDLFGGSLSFINADQIVQLLRAVAANAKGYAF 123 Query: 120 DLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAG 179 LAL P+ + QK +N +SCQ AQG + L + + A Sbjct: 124 QLALDNVFPDGAKWIENFQKKVQALNQHLGNSCQLAQGFVNDLTSGMDLKHKTDASITAT 183 Query: 180 ESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNR----MFDGN 235 S ++ D+ S+Q + + ++ D+ + + NI+W L N G+ Sbjct: 184 TSGLYEDFFGSKQETSGKSPLEELKANKPDEYNKMI---GNIVWKQLKSNNANTWFQYGD 240 Query: 236 KELKEFVMTLTGSLVFGP----------NGEITPLSARTTDRSIIRAMMEGGTAKISHCN 285 L E +M+LTG+++ G + TPL+ ++ + ++ GG+ +I C+ Sbjct: 241 NTLLEAIMSLTGTVIIGDLVNDPNSTGTGAKTTPLTTLPGNKITLSDLISGGSVEIYSCD 300 Query: 286 -DSDKCLKVVADTPVTISRDNALKSQITKLLAS-------IQNKAVSDTPLDDKEKGFIS 337 D+ CL + + +K+QIT +L I A + L D EK F+S Sbjct: 301 SDTTNCLSAGSSNKTVV--LKGIKNQITDMLLGTSSTPGVIYKYATNSGTLTDPEKAFVS 358 Query: 338 STTIPVFKYLVDPQMLGV--SNSMIYQLTDYIGYDILLQYIQELIQQARAMV--ATGNYD 393 + + + + +L +N + + I ++ + +E + AR + + Y Sbjct: 359 NLPGGIGTIVRNLSVLSQDGANLFATESSGAIALTMMYSFSEEFFRAARIAMANSKSPYK 418 Query: 394 EAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQ 438 + + + + + SQ + + + +R+Q Sbjct: 419 KEALELLAQSQQQIRAEYTILSSQYGDLASQIEKYNNLLDNIRKQ 463 >UniRef50_Q1NGS0 Putative uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGS0_9SPHN Length = 523 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 90/472 (19%), Positives = 172/472 (36%), Gaps = 33/472 (6%) Query: 2 MPRIKPLLVLCAALLTVT---PAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAY 58 M R VL A L T AA A S +F+ + + T PG ++ Q GY Sbjct: 50 MRRFISSPVLSAIALLSTCGLTAAPAHAQSWAEHWFDNVTY----TSPGSFEDQTRGYVT 105 Query: 59 GGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYF 118 G + R V + L S+TLP + AGCGGID +LG SF++ + L + ++ I+ A Sbjct: 106 AGGMSGRIDVHSDYLTSLTLPKVKAGCGGIDMFLGGMSFLDPDYLVQKLESILQAAPAVA 165 Query: 119 FDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQ--QKVCQD 176 F L+T ++ ++ + +NS+ ++ C+ A ++ +S +++ Sbjct: 166 FQYLLETLDEKMGNIISKMEAATNFLNSIQVNDCRLANRMVQIAKGDDNMSGIIEEMTGY 225 Query: 177 IAGESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNK 236 + + + SR+ G S + K + + +I + L+ G Sbjct: 226 KSVKEGYAKSYQQSREKIQANGNSPTEDLKDALANCPAEVTDIFRTGSLLAHAASRVGAS 285 Query: 237 ELKEFVMTLTGSLV--FGPNGEITPLSARTT----DRSIIRAMMEGGTAKISHCNDSDKC 290 + + G + + ++ +A D + G + Sbjct: 286 DWAGVMRARVGDVYMRWDATDKVPLFAAIPACAAQDTESSDDFLSGRVMR-------RAL 338 Query: 291 LKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFI-SSTTIPVFKYLVD 349 T + + + +I K + L +E+ F+ + T+PV++ L Sbjct: 339 AMPPTAADCTQDSGRGALALTRERMTAIAEKIRTRAALTAEERQFVANVRTLPVYRMLEW 398 Query: 350 PQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMV---ATGNYDEAVIGHINDNMND 406 V NS+I + + + Q + +L + + G + N+ Sbjct: 399 GVRQDVVNSVIGDTDELVALTLAYQMLNDLSRSIEFALFNAERGTNAAGASDGASANICQ 458 Query: 407 ATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGSTL 458 ++ +D V RQ + MRQ A + Q N G + L Sbjct: 459 TR----ILTKGIEQLRDLREEVLRQRAQMRQSYLAALS---QANLSTGYAGL 503 >UniRef50_Q1MY31 TraH n=1 Tax=Bermanella marisrubri RepID=Q1MY31_9GAMM Length = 475 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 106/484 (21%), Positives = 197/484 (40%), Gaps = 40/484 (8%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +K LL+L + + AD+ ++ F+ G SNTT+PGV++ Q A Y G Sbjct: 1 MKKLLILASLSIFSYFTWGADIGDEVESMFD--GAYSNTTEPGVYKTQGASYVTFGGYSE 58 Query: 65 RTQV--KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLA 122 R + KN+ L+++ P + AGCGGID G FS I+G++ ++ I NA FF L Sbjct: 59 RNPITKKNINLVNINPPKVTAGCGGIDLQAGGFSMIDGDEFVDNLRNIGQNAKSLFFMLG 118 Query: 123 LQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESN 182 LQ P I + + K D NL SC+AA ++GG + +S Sbjct: 119 LQLVTPTINDVMNKVNKFQKDYLQFNLDSCEAATQLVGGAMEYAGAEGGECIVRRMQQSG 178 Query: 183 IFADWAASRQGCTVG-GKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEF 241 D+A +++ CT G G+ +++ + N++W L ++ F N + Sbjct: 179 --DDYAEAKKHCTTGMGRRNTMETGGEN---TVTFSKGNLIWWHLMQDDFFKNNLDYSLL 233 Query: 242 VMTLTGSLVF-------GPNGEITPLSARTTD-------RSIIRAMMEGGT-----AKIS 282 VM L G+++ E+ +S T+ R+II A++ G ++ Sbjct: 234 VMNLLGTIIVKYDDNSADSGKEVIRISRAATEAGLTTDGRNIINALLSGTEGPAANLQLK 293 Query: 283 HCND----SDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISS 338 C D D C+ VTI + + + +A I ++ L F+S Sbjct: 294 TCTDMNNTKDACINYNGSNDVTIDW-KGMTTYVQDTIADINTAISNNGSLSSDALAFLSQ 352 Query: 339 TTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYI-QELIQQARAMVATGN----YD 393 T IP++++++ ++ +T I + L ++ L+ + + Sbjct: 353 TPIPLYRFILLE-RANNPSAQFSTVTRDIADKLALSHLYSGLLATIEVVRDRVGDTDMTE 411 Query: 394 EAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHF 453 + +++ I Q + + L + M + QL R+ + ++ ++ Sbjct: 412 SKQVKAFMKDLDVVASAIINEQQTTEFRLQELSNIANHMHRVETQLKKRLSAETISSMNW 471 Query: 454 GGST 457 Sbjct: 472 SSKG 475 >UniRef50_Q1RJF7 F pilus assembly protein TraH n=31 Tax=Rickettsieae RepID=Q1RJF7_RICBR Length = 446 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 113/448 (25%), Positives = 208/448 (46%), Gaps = 26/448 (5%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 + + +L++ L T T A D+ F + + N T+PG +Q QAAGY Y Sbjct: 15 IKHVMHILMIILLLQTTTTYAW-----DLQDVFQGM--SVNVTKPGSYQSQAAGYYYAAG 67 Query: 62 -LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 L RT + IS+T P +N C GID+YLGSFS I+GE+L + +K I + A Y F Sbjct: 68 GLSIRTNKTSFNPISITPPSLNMSCSGIDSYLGSFSIISGEELVQLMKNIGTQAKAYAFS 127 Query: 121 LALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGE 180 L L+T P+I+ A L+ +A ++N C+ + I + P+ ++ VC+D+ Sbjct: 128 LGLKTFAPQIENALKDLRNLAMEMNQFAKGDCEMTKAIFASILPKDSAMRESVCRDLQSS 187 Query: 181 SNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKE 240 S D+ A+ + C + ++D E + N NI A K + + ++ Sbjct: 188 SGF--DYFAAGKKCRSDLEQKQALANIQNQDPELMLTNYNIFIKAAEKAGIPEN---MRS 242 Query: 241 FVMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVT 300 +M++TG+++ N S ++S I + G +A I C++S+ CL +T Sbjct: 243 AIMSMTGTIIVRDNNVYFLESLAQDEKSWIAHLKGGESASIYTCDNSN-CLNPDLRRNIT 301 Query: 301 ISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTT--IPVFKYLVDPQMLGVSNS 358 I D + + + L +++K S+ + + F+SS P++ Y+ + GV+ Sbjct: 302 IVLDQSYQGKAKTKLDELKSKLTSNNEFSNADISFLSSIGEAFPIYDYITLEAISGVT-- 359 Query: 359 MIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQV 418 ++ ++ + LLQ+++E+ + R V + H+ + + + Q Sbjct: 360 ILDSSSELVASYSLLQHLKEVTSEVRKAVTMLKSKQVADHHLTAYL----KALDRVQLFA 415 Query: 419 QVQQDALL----VVDRQMSYMRQQLSAR 442 Q + +L +DR+ + Q L A+ Sbjct: 416 QEKWSNMLTSSDQIDRRARLIEQHLIAK 443 >UniRef50_A0R7T1 Putative uncharacterized protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7T1_PELPD Length = 495 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 87/468 (18%), Positives = 180/468 (38%), Gaps = 36/468 (7%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 I+ V A +L P + + + + + P +QG GY GGS Sbjct: 5 KTTIRRAAVCVALMLLTLPTIARS------GWVDDWITSKQSASPSSFQGATRGYYTGGS 58 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 A + N L++++ P I +GCGGID ++G F+F++ + L + +++IMS A FD+ Sbjct: 59 FQAHWKDSNDYLMTVSTPHIKSGCGGIDTFMGGFAFMDVDYLVQKLQRIMSAAPAAAFDI 118 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLF-PRTQVSQQKVCQDIAGE 180 AL+ P+I L A +N++ L C+A++ ++ + P + + +K+ +++ Sbjct: 119 ALKAVSPQISGTLKELGAWADALNNLQLDDCKASKALVATIASPASNLLGEKMQSELSSA 178 Query: 181 SNIF------ADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWN-----ALSKN 229 + F D G + D AS + T +I L Sbjct: 179 QSDFWTSSGMGDLYTKVTGLFKSEQKDVASGNASTAPTIQATAQGSIAGCPQEIVDLYGQ 238 Query: 230 RMFDGNKELKEFVMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCND--- 286 F N K+ + T L+ G G++ + TT + + +++ C+D Sbjct: 239 GSFLDNIAAKKNLPTAYVELIRGFVGDVEIIPPATTGSTFVARVVD-------SCDDNAS 291 Query: 287 --------SDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISS 338 + A + +L + +L SI K + E+ F+ S Sbjct: 292 PVAFLMGHTSSKASPTASCQQITDTNRSLVTYSVNMLTSIITKMKTKVAYSLAEQDFLGS 351 Query: 339 TTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIG 398 V+ YL + ++ + +L + + + +L + + + + + Sbjct: 352 MPPGVYNYLRAAASTKMESATVAELANIASNALAYYMLSDLFIKIQQLPDAVAHINSSSV 411 Query: 399 HINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSR 446 + AT Q++ + L + ++M +++ +A M Sbjct: 412 GAKSGADPATCQLSLLNPTKAQFEVVLERIHQKMLEIKENYTAVMAES 459 >UniRef50_C4S402 Pilus assembly protein n=2 Tax=Yersinia RepID=C4S402_YERBE Length = 462 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 75/467 (16%), Positives = 170/467 (36%), Gaps = 49/467 (10%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 M IK +++L L +T +A+ ++ +++F+ + + P ++ Q GY G Sbjct: 1 MINIKKIVILTLTSLYIT---AANADNWADKWFDNAVYDT----PSSFESQKRGYYTMGG 53 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 AR I+++ P ++ GCGGIDA+LG FSF++ + L ++ M A FD+ Sbjct: 54 FSARNNSSTDYPITISPPKLSVGCGGIDAFLGGFSFLDPDYLVEKAQRAMQAAPYVAFDM 113 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGES 181 AL+T E ++++ + +N + L+ C A+ I + + + + ++ G Sbjct: 114 ALKTMCKECADTLGKIEQITNFLNGIQLNECALAKPIATAAITQDAEALKGLWTEMTGTK 173 Query: 182 NI--FAD--WAASRQGCTVGGKSDSVRDK----ASDKDKERVTKNINIMWNALSKNRMFD 233 ++ +D W S + K + + + ++ +I+ A K + + Sbjct: 174 SLDEASDRLWTESTSKIKANDNKPTQDLKSMIEGCPAEFKDLMQHGSIVERAAQKVGLGN 233 Query: 234 GNKELKEFVMTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCND--SDKCL 291 + + G + + + S + +D + + Sbjct: 234 ----YADTIRGYLGDVWIESK-TADRIPVAVSIPSCPQNQK-------YSLDDMLTGRSF 281 Query: 292 KVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQ 351 + S ++ + + + NK + L E FI+ST +PV+ L Sbjct: 282 VKTINKQCVPSSSKPVRDIVFAKMQKVLNKMKAGQELGTDEVKFINSTNLPVYSILKQAI 341 Query: 352 MLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGN-------------------- 391 + M+ L + +G + +L + ++ N Sbjct: 342 TSKQDDVMLNVLAELVGLNYSYYIFSDLYRNTQSAFDAVNEMMSSPLSDPNNAKKPCRMD 401 Query: 392 YDEAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQ 438 + D + A ++ + + ++ + R+Q Sbjct: 402 LFAPALSKFGDLIQQARDSSVKVEATYNSRLQSYMLNSGFIETFREQ 448 >UniRef50_Q2LU06 Pilus assembly protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU06_SYNAS Length = 488 Score = 293 bits (751), Expect = 8e-78, Method: Composition-based stats. Identities = 81/454 (17%), Positives = 166/454 (36%), Gaps = 39/454 (8%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +K ++VL L ++P + M + + T PG ++GQ GY GGS A Sbjct: 9 LKSIVVLVIIALLLSPLGP---DGPMAGWVDDWLQQKTETSPGYFEGQKRGYFTGGSFSA 65 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R Q N L + P + AGCGGID +LG FS++N E L +++IM A FD+AL Sbjct: 66 RWQQGNDYLFTAMPPKVKAGCGGIDVFLGGFSYLNFEYLVTKLQRIMQAAPAAAFDIALN 125 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNIF 184 L+ + + +N++ L C+A + ++ + P + + +AG F Sbjct: 126 VLCEPCSKTIKSLEAITNTLNNLQLDECKAGRALVATMVPPSLAETKDKQAKLAGIQGDF 185 Query: 185 ------ADWAASRQGCTVGGKSDSVRDKASD------KDKERVTKNINIMWNALSKNRMF 232 D S T + V + ++ + +++ N +K Sbjct: 186 LQSSGVNDLWKSINDQTSANANKPVTNMKQALAGCPQDIRDVFGTSGSVINNIAAKTGF- 244 Query: 233 DGNKELKEFVMTLTGSLVFGPNGEITPLSARTTDRS-----IIRAMMEGGTAKISHCNDS 287 N+ + + G + G+ T +++G + Sbjct: 245 -NNQSYLDMLRGFVGDVYIIDAGDAGFQVGHTPPCDQNRYASFDNLLDG---SVYARTAG 300 Query: 288 DKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYL 347 C ++ L + + + I K + L D++ F++++ + + L Sbjct: 301 GACAQIT-------DSSADLTNYVRTKMTRIAGKIKAKQALSDEDNAFVNASPLSIGLVL 353 Query: 348 VDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDA 407 +S+I L+D Q + +L + ++ + A Sbjct: 354 KAAVGTNQESSIISTLSDVTAKAYAFQLLSDLYTKVWNIM-------EKARSLAQAQPGA 406 Query: 408 TRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSA 441 + +Q ++++ A+ + + + +S Sbjct: 407 VQGAQEYQCKIEMLSGAIDGTAEMQARIVEMVSG 440 >UniRef50_D2U124 Conjugative transfer pilus assembly protein TraH (Fragment) n=1 Tax=Arsenophonus nasoniae RepID=D2U124_9ENTR Length = 429 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 84/435 (19%), Positives = 163/435 (37%), Gaps = 27/435 (6%) Query: 2 MPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGS 61 M + L+L L T + + ++NS +N+ F G SN+T G +Q GG Sbjct: 1 MKKTFLGLMLVVILATPSITYADNINSQLNEMF---GSMSNSTGSGSYQSVTRDGYIGGG 57 Query: 62 LYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 R Q++ + I+++ P I+AGC GID + GSFSFIN ++ + ++ I +N+ G F L Sbjct: 58 FVVRNQLRTISPINISTPKISAGCSGIDFFSGSFSFINADEFVQLLRNIAANSVGLAFQL 117 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGES 181 A+ + LQ + +N + +SCQ ++GI+ + + + + Sbjct: 118 AINAMDSVLGGEISKLQALIQKLNEYSANSCQLSKGILVDMASAFSENAKTAVGNTLASE 177 Query: 182 NIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNR----MFDGNKE 237 I + G+ V+ T N+MW AL++ E Sbjct: 178 GIIDSIESIASEPM--GRKPVVQTAEKAGKITPCTHYGNLMWCALNRGGFNSNFMGSEIE 235 Query: 238 LKEFVMTLTGSLVFGPNGE------------ITPLSARTTDRSIIRAMMEGGTAKISHC- 284 KE VM++ G ++ + TP+ S+++ + +I C Sbjct: 236 QKELVMSMVGMVIVEKPTKNTSGEMPFNHTVATPIPMNEIYDSLMKGTKDNPNFRIYGCG 295 Query: 285 NDSDKCLKVVADTPVTISRDNALKSQITK--LLASIQNKAVSDTPLDDKEKGFISSTTIP 342 +D+D C +N L I N S+ L ++ Sbjct: 296 SDTDICAHPSPKQIKIDGLENIFLKLFDDGFLENYISNAKTSNALLQKAYLFNVNGAVTN 355 Query: 343 VFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVAT--GNYDEAVIGHI 400 ++ + + Q + + I Y+ + Y+ ++ A + + D+ ++ + Sbjct: 356 GYQLI-EGQDTTRALHYYRSIAPIISYEAVYGYLNAMLNVAEMSLGKMIQSNDDPLMAYT 414 Query: 401 NDNMNDATRQIAAFQ 415 + Sbjct: 415 KIQIEKIQEAKKELS 429 >UniRef50_Q4HPA7 Putative uncharacterized protein n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HPA7_CAMUP Length = 468 Score = 288 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 98/466 (21%), Positives = 183/466 (39%), Gaps = 38/466 (8%) Query: 11 LCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQV-K 69 + +L+ A +N + F G +N G ++ QA G GS R Sbjct: 6 VALSLILSLCLQGASLNDTLKNF---DGSLTN-ENAGYYKTQARGLYSLGSARVRFGGGS 61 Query: 70 NVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPE 129 V ++ P I+AGCGGID G FS++N E + +K+I S A + F++AL T + Sbjct: 62 TVVPFNVRAPSISAGCGGIDMVFGGFSYLNFEFIVEKLKKIASAAPAFAFNIALSTLCKD 121 Query: 130 IKTAKDFLQKMASDINSMNLSSCQAAQGIIG-GLFPRTQVSQQKVCQDIAGESNIFADWA 188 +T L+K+A+ INSMN +CQ +Q + G V + Q + D Sbjct: 122 CQTIMSELEKIANTINSMNFDTCQISQSSVNWGARQLGIVKNSNLAQGVDDSWLKIGDKM 181 Query: 189 ASRQGCTVGGKSDSVRDKASDKDK--ERVTKNINIMWNALS-KNRMFDGNKELKEFVMTL 245 S+ VG ++S+ + +D + + +++ + N + KE + L Sbjct: 182 PSQ---IVGDFTNSMNNLFNDGGETVKEYLMQGSLLKKTMEVYNPIISSGKEFEYLTRAL 238 Query: 246 TGSLVFGPNGEITP----------LSARTTDRSIIRAMMEGGTAKISHCNDSD--KCLKV 293 G +V P + R ++ GG K S ++ +K Sbjct: 239 IGDVVGETVEGSNPKTQEPFSLKVYVGKLDIRDFKEVLLNGGEVKGSKVEYTENGGTVKD 298 Query: 294 VADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDP--Q 351 V + I D LK I + I N V++ L + FI+S IP+++ L Sbjct: 299 VRFSDENIKFDKGLKYIIKDKITEIYNAMVANRSLSADQLKFINSVPIPLYRILNVAVLA 358 Query: 352 MLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNY-----------DEAVIGHI 400 + + ++++ I I+ I L+ M+A+ EA I + Sbjct: 359 DTDGQSMDLEKISETIALQIINVLISTLLTDMSNMIASYKEQKGSKVIQNDDQEAKIRVL 418 Query: 401 NDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSR 446 +N + ++ ++ ++L ++ + + ++L + Sbjct: 419 EENARKVKTLLTEEINKQNIEWSSVLKTNKMWNEIERELYG-LSPS 463 >UniRef50_A2SNL1 Sex pilus assembly protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNL1_METPP Length = 481 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 94/469 (20%), Positives = 168/469 (35%), Gaps = 61/469 (13%) Query: 1 MMPRIKPLLVLCAALLTVT-PAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYG 59 M ++ L A ++ A A + ++ F SN+T P + Q+ G G Sbjct: 1 MKINLRILAAATALAASLFASPAHAGLQDALDGMF-----MSNSTAPQAFSSQSRGGFVG 55 Query: 60 GSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFF 119 GS+ RT V+N+ L++ P + AGCGGID + GSFSFIN +QL +QI +N+ G F Sbjct: 56 GSVAMRTPVRNINLVAFDPPRLAAGCGGIDMFGGSFSFINADQLVALFRQIAANSVGLAF 115 Query: 120 DLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAG 179 A+ P + Q +N ++C A ++ F + V A Sbjct: 116 KAAIDYINPALGKQMQEFQAKMQALNENMRNTCAIANQVVKS-FSDPSARKDMVDGATAA 174 Query: 180 ESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNAL--SKNRMFDGNKE 237 + G T + + + +D + N +W AL S + + G+ Sbjct: 175 AEAAKGGFDDLWSGMTSFFTTPNSATRTADAG-GYCAECGNPVWKALVSSNSGVLLGDPT 233 Query: 238 LK---------EFVMTLTGSLVF---------------GPNGEITPLSARTTDRSIIRAM 273 E +M+L G+++ G + P T + Sbjct: 234 TSTDSNANRTNEIIMSLMGTVIMSTTKADTTTTGGVTQKDTGTVKPY--LLTLFDLRDGS 291 Query: 274 MEGGTAKISHCNDSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTP------ 327 G KI C+D + T ++ D +K + K+L + S P Sbjct: 292 SSGKPFKIWTCSDGYAKHQCTQLTETAVTFD-GMKGYVNKMLFGYADGLASGVPTAGSII 350 Query: 328 ------------LDDKEKGFISSTTIPVFKYLVDPQML-GVSNSMIYQLTDYIGYDILLQ 374 +K F++S P + Q + G S + +L D I +I ++ Sbjct: 351 GKLESCSTTSCGFTQAQKDFLNSVQTPTLALVRKVQAVPGASQHVATRLVDQIANEIAVK 410 Query: 375 YIQELIQQARAMVATGNYDE-----AVIGHINDNMNDATRQIAAFQSQV 418 Y + ++ R G + + +++ ++ Q Sbjct: 411 YGEAAVRAIRMSFTEGKFPKPPEIVEAEKQRLAELSELRQENTKLTEQT 459 >UniRef50_Q8L263 Pilus biogenesis protein n=2 Tax=Enterobacteriaceae RepID=Q8L263_PROVU Length = 483 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 103/456 (22%), Positives = 188/456 (41%), Gaps = 36/456 (7%) Query: 1 MMPRIKPLLVLCAALLTVTPAASAD-VNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYG 59 M I LVL A LL+ T A+AD +N +N F G SNTT+PG + G Sbjct: 14 MKRSILSSLVLMAGLLSFTSNANADSINDQLNNMF---GSMSNTTRPGDYHSVTRDGYTG 70 Query: 60 GSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFF 119 G R +++++ +++ LP GCGGID + GSFSFIN ++ + ++ I +NA+G F Sbjct: 71 GGFTLRNKLRSLTPVNIQLPSAAGGCGGIDLFGGSFSFINADEFVQMLRNIAANASGLAF 130 Query: 120 DLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQG-IIGGLFPRTQVSQQKVCQDIA 178 LAL + A +Q + +N + +SCQ A+G ++ ++ V ++ Sbjct: 131 QLALNAMDAVLDNAISRMQAVIQQMNDLTANSCQLAKGLLVDTAAAFGSEAKASVSAQLS 190 Query: 179 GESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSK----NRMFDG 234 + +D + G G KS + K + N+MW L+ N+ Sbjct: 191 SDG--LSDQFDAFMGGMNGSKSSPAK-KEDAGKRVACKDYGNLMWCLLNNGQFTNQFLGS 247 Query: 235 NKELKEFVMTLTGSLVFGPN----------GEITPLSARTTDRSIIRAMMEGGTA-KISH 283 + KEF+M++TG+ + N G L A + A++ G TA I Sbjct: 248 TDQQKEFIMSITGTYIVPKNISTDDTGNLIGGAPILIAPLDTSDALEALVNGNTAFDIYK 307 Query: 284 CNDSDKCLKVVADTPVTISRDNALKSQITKLLAS--IQNKAVSDTPLDDKEKG---FISS 338 C D++ C T L +I + + + V+ TPL + F +S Sbjct: 308 CTDTESCANP----QTTTLAITGLAQKIIQFFDAEGYLSDVVAGTPLTTSQLQKALFFNS 363 Query: 339 TTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMV--ATGNYDEAV 396 + + ++ + + ++ + Y QY+++++ A N + A Sbjct: 364 IGASSNASSMAKYDINLATAYVKEIAPILAYSAANQYLRDMLTAAATSAKYEIDNNNPAA 423 Query: 397 IGHIND--NMNDATRQIAAFQSQVQVQQDALLVVDR 430 + +++A +++A + + Sbjct: 424 ESYAKTIVLISEARQRLADSYLAYTSKYGGESKIIE 459 >UniRef50_B4RLQ8 TraH n=13 Tax=Neisseria RepID=B4RLQ8_NEIG2 Length = 452 Score = 281 bits (720), Expect = 3e-74, Method: Composition-based stats. Identities = 98/430 (22%), Positives = 181/430 (42%), Gaps = 32/430 (7%) Query: 37 LGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFS 96 +G +N T+ G + GQ+ GG + R V ++ L ++ LP I+AGCGGID + GSFS Sbjct: 1 MGAEANYTEAGAFHGQSGSLYTGGGMSVRFPVSDISLGNIQLPSISAGCGGIDFFAGSFS 60 Query: 97 FINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQ 156 F+N EQ +F + + +NAAG FDLAL+ P I+ A ++ + + +N +L+SC+ +Q Sbjct: 61 FVNKEQFIQFTRNLGNNAAGVAFDLALKALDPMIQDAIGGIRDLVNYVNQNSLNSCKLSQ 120 Query: 157 GIIGGLFPRTQVSQQKVCQDIAGESNIFADWAASRQGCTVG----GKSDSVRDKASDKDK 212 I+GG + C+ + +S D A C ++D VR+ +D Sbjct: 121 DIVGGAMGKLGSLASSNCRAASVDSGSSNDPAEGAWYCQAAKNLVHEADKVRNTGKPQDT 180 Query: 213 ERVTKNINIMWNALS-KNRMFDGNKELKEFVMTLTGSLVFGP----NGEITPL------- 260 T N+ + A+ +F ++ G++VF P G+ Sbjct: 181 ISFTG-GNLTYEAMKNYTGQRSKLGIDMDFYYSMLGTIVFTPLTQHEGDKDKYTVGIQSF 239 Query: 261 -SARTTDRSIIRAMME-GGTAK------ISHCNDSDKCL--KVVADTPVTISRDN-ALKS 309 + + ++ GG + + C D K L V I + Sbjct: 240 EPKILSIQDLLNGKNNAGGEIREKVVLDMWTCKDGSKKLMENCTEKNDVEIPSLRYMVHK 299 Query: 310 QITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLTDYIGY 369 +I L +I+N + + ++++ +P+ K V LG + D I Sbjct: 300 RIETLPTAIRNNQGWNLSTRKQIAAIVNNSKLPILKMAVSDAFLGTGYLKKTAVLDAIAV 359 Query: 370 DILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQ-VQVQQDALLVV 428 DI+ + + +Q R+ + N + + + + +S+ Q + D++ + Sbjct: 360 DIMANILDQSERQVRSTLGMYNKTDDAS---GEAVRKLFANLGELRSRIYQERIDSMKKI 416 Query: 429 DRQMSYMRQQ 438 + + S MR Sbjct: 417 EIEESMMRAM 426 >UniRef50_Q5NX61 Sex pilus assembly protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX61_AZOSE Length = 474 Score = 281 bits (719), Expect = 4e-74, Method: Composition-based stats. Identities = 100/489 (20%), Positives = 194/489 (39%), Gaps = 59/489 (12%) Query: 2 MPRIKPLLVLC-AALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 MP IK + +L T+ A + ++ N T P +Q Q GG Sbjct: 1 MPNIKIAALAVGLSLYTMMTPTHASLGGALDGM------LINVTDPVAYQSQTRRGFVGG 54 Query: 61 SLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFD 120 ++ R+ ++NV ++S P ++AGCGGID + GSFSFI+ +QL + I NA G F Sbjct: 55 NVAMRSPIRNVNIVSFDPPRMSAGCGGIDLFAGSFSFIDSDQLIAVFRSIAQNALGLIFM 114 Query: 121 LALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGE 180 AL P++++ +Q +N ++ ++C A+ + +F + + A Sbjct: 115 RALAAIDPKLQSLVSTIQSKLQSLNQLSSNTCAIAKQAVDTVFNSVERASTSAESGAA-- 172 Query: 181 SNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKN-------INIMWNALSKN---- 229 + + G KAS K K + N++W+ ++ N Sbjct: 173 ------FFEAIAGGVGDLFESQEAVKASPKAKIKQACEAGSIEFCGNVVWDLMADNRVGE 226 Query: 230 ----RMFDG--NKELKEFVMTLTGSLVFGPNGEI----TPLSARTTDRSIIRAMMEG--- 276 F G K E VMT+TG+ ++ P TP A+ + + + G Sbjct: 227 LLGGGYFAGLSTKYAAELVMTMTGTAIYDPESAPSASETPRMAQRPGKIDLHDLKTGRSS 286 Query: 277 GTAKI-SHCNDS---DKC---LKVVADTPVTISRDNAL--------KSQITKLLASIQNK 321 G KI C+ + D C +V D T+ N + + ++ + Sbjct: 287 GAQKIKYSCSSAPARDGCRSMDEVAWDWEGTVGYTNRMLFGSIDGTSTTADSIVGKMSPA 346 Query: 322 AVSDTPLDDKEKGFISSTTIPVFKYLVDPQML-GVSNSMIYQLTDYIGYDILLQYIQELI 380 D L ++ F+++T++P +++ Q G ++++ Q I ++ + + ++ Sbjct: 347 CAVDCTLSATQQSFVNATSVPFISMMLEVQSQEGAASAVAAQAAPLIAEELHIVLSEAVL 406 Query: 381 QQARAMVATGNY---DEAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQ 437 + AR +++T + + + N +R + ++ Q AL R ++ Sbjct: 407 RAARQVLSTKGSTTIPPEIHDRVRELGNQYSRIVTNRKANAQE-FVALDEYVRTIARRDP 465 Query: 438 QLSARMLSR 446 + R Sbjct: 466 SILTFTTPR 474 >UniRef50_A4JTN5 TraH family protein n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JTN5_BURVG Length = 483 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 101/481 (20%), Positives = 187/481 (38%), Gaps = 57/481 (11%) Query: 1 MMPRIKPLLVLCAALLT--VTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAY 58 M R K +++L + + + ++ A+A + ++ F SN+T P + Q+ G Sbjct: 1 MKMRFKRVILLMSLVCSVGMSSTANAGLQDALDGMF-----MSNSTTPDSFTNQSRGGLV 55 Query: 59 GGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYF 118 GG R ++N+ LIS P ++AGCGGID + GSFSFIN +QL +QI +NA G Sbjct: 56 GGGASVRMPIRNINLISFDPPRLSAGCGGIDLFGGSFSFINADQLVALFRQIAANAVGVA 115 Query: 119 FDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQ---QKVCQ 175 F A+ P + Q + +NSM ++C A I+ + + V Sbjct: 116 FKAAIDAINPALGKLMQDFQNKIAALNSMMKNTCALATTIMDKTGVSGAIRSFVDENVSS 175 Query: 176 DIAGESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALS--KNRMFD 233 + +S + D + +++V KE + N+ W AL+ + Sbjct: 176 ETGSKSGMLTDMFSGIDSFLS--NANTVTRNVQKSGKE--PELGNLTWMALNTTQAGQML 231 Query: 234 GNKEL--------KEFVMTLTGSLVFGPNGEITPLSARTT----------DRSIIRAMME 275 GN + E VM+L G++V GP ++ + + + + Sbjct: 232 GNPQTGETDANGANEIVMSLIGTVVNGPENSSDTTASDGSVAVDNGRYWAPTIRLLDLKD 291 Query: 276 G---GTAKIS--HCNDSDKCLKVVADTPVTISRDNALKSQITKLL-----------ASIQ 319 G G + C D K + + +S + + +L SI Sbjct: 292 GNMSGNKPMYALRCADGYDLNKCMKISKQNLSF-GGVSGYVNLMLFGDAAGRSISTDSIV 350 Query: 320 NKAV----SDTPLDDKEKGFISSTTIPVFKYLVDPQML-GVSNSMIYQLTDYIGYDILLQ 374 K V + +K FI + + PV + Q + G + M + ++ L+ Sbjct: 351 GKLVSCSGNACDFTSAQKTFIGNISAPVLGLMKKVQSMPGAAAQMAVLTAPIVTDELTLK 410 Query: 375 YIQELIQQARAMVATGNY-DEAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMS 433 Y + + A+A + Y + I ++ + Q+ S + +A + + +S Sbjct: 411 YAESALVAAQAAFSGTTYTKDEKISSAERDLLNEVIQLRTSSSADFEKLNAAIAYSKAIS 470 Query: 434 Y 434 Sbjct: 471 E 471 >UniRef50_B7XGS6 Putative pilus assembly protein n=2 Tax=Pseudomonas RepID=B7XGS6_PSEPU Length = 466 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 110/449 (24%), Positives = 185/449 (41%), Gaps = 42/449 (9%) Query: 3 PRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSL 62 +IKP+ + A + V A A++ +N+ F+ + N T PG ++ G GGS+ Sbjct: 1 MKIKPIALAVALM--VPFGAHANIQQQVNEMFSGM---INVTSPGAYKTATRGVITGGSV 55 Query: 63 YARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAA----GYF 118 R ++ LIS+T P GCGGI+ Y GSFSFINGE+ ++ + SNAA G+ Sbjct: 56 VLRNRISTANLISITPPSAKGGCGGINLYSGSFSFINGEEFVALMRNVASNAAGIVSGFA 115 Query: 119 FDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIA 178 F+LAL + L +N M +SCQ A G++ + S A Sbjct: 116 FELALDAMDAQTGGVIRNLANKIQALNQMFSNSCQLASGLVTNAKKAYEESTDFKSAMTA 175 Query: 179 GESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKN-INIMWNALSKNRM----FD 233 SN+ +D+ ++ K DS ++ + K +N N++W A+ K+ + Sbjct: 176 FGSNVSSDFFTAKS-----TKEDSPANRIAASGKAVQCENTGNVLWCAMMKSGLQSQILF 230 Query: 234 GNKELKEFVMTLTGSLVF--------GPNGEITPLSARTTDRSIIRAMMEGGT---AKIS 282 G+ E EF+M++ GS G N P+ T + + ++EG T K+ Sbjct: 231 GSDENAEFIMSMVGSYNVSLTNDASGGKNFAAHPMPKLITGEGL-KILVEGSTNLDVKVY 289 Query: 283 HCNDSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIP 342 C+ D T++ L+++ I ++ L+ G ++ Sbjct: 290 QCDQDDP--DCSEPNIRTLTSFKGLETR-------ILEDLQNNGILERFANGTATAADGN 340 Query: 343 VFKYLVDPQMLGVSNSMIYQLTDY-IGYDILLQYIQELIQQARAMVATGNYDEAVIGHIN 401 YL +GV+ I Q GYD L Q+ +++ A + G + Sbjct: 341 RIAYLAS-SRVGVNLMKITQKAGAQSGYDYLNQFAKKIAADASMSLIYQLLGHTEKGLTS 399 Query: 402 DNMNDATRQIAAFQSQVQVQQDALLVVDR 430 NM DA + I ++ D Sbjct: 400 LNMADAGKVIEDLRATKGELMDEYRSYIE 428 >UniRef50_C4Z010 Putative uncharacterized protein n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4Z010_9RICK Length = 460 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 99/450 (22%), Positives = 200/450 (44%), Gaps = 31/450 (6%) Query: 9 LVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQ- 67 +++CA L + AA A + + M G SN+++ + Q Q G+ GGS+ +T Sbjct: 1 MIICALLQSA--AAYAGIETLMKSVMPS-GTLSNSSKAALIQDQLGGHLIGGSMVVKTPG 57 Query: 68 VKNVQLISMTLPDINAG---CGG-IDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLAL 123 + ++ L T P G C D +G+FS+I+ +++ +KQ+ NA+ Y + + Sbjct: 58 IDDITLGHFTPPTCKLGGLPCNAHFDLRMGAFSYISSKEMMESMKQMAQNASVYGGIMLV 117 Query: 124 QTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESNI 183 +T P+ + +++ + +++ + +C+ I G + S + Q S Sbjct: 118 KTMCPQCENLMTWIESVGRNVSDILNVNCERMMAPITGAMDKFAKSAEAKRQADLYLSGK 177 Query: 184 FADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVM 243 D A Q SD V + K ++ +N N++W ALSK G ELKE +M Sbjct: 178 SKDSAEIVQKAKKDSDSDPVTHN--PELKTQLGENFNLVWKALSKTASQTGTTELKELLM 235 Query: 244 TLTGSLVFGPNGEITPLSARTTDRSIIRAMM-----EGGTAKISHCNDSDKCLKVVADTP 298 +++G++V G + + ++ +I M G + CN+ CL Sbjct: 236 SISGTIVIQ-KGLPPKIYSSLAEQELIEQYMGVSNKSSGQITLYVCNEDKLCLNPTKQQK 294 Query: 299 VTISRDNALKSQITKLLASIQNKA---VSDTPLDDKEKGFISSTTIPVF-KYLVDPQMLG 354 T + L S+++ LL S+ +K + ++EK I +++P+ K +D + Sbjct: 295 -TFTSSETLHSKLSTLLESMTDKIYKDKDNPDFTEEEKDLIDLSSLPLIPKIEMDLAIFK 353 Query: 355 VSNSMIYQLTDYIG---YDILLQYIQELIQQARAMVATGNY----DEAVIGHINDNMNDA 407 S ++ + D+I YD++ ++ +L+++ V +Y D + +N + Sbjct: 354 SSQNISVKSHDFITHLCYDVVTSHLAKLLKKTSDAVEELSYVQISDTGIFEQFANNAREI 413 Query: 408 TRQIAAFQSQVQVQQDALLVVDRQMSYMRQ 437 R I+ +S+ + D + + + +RQ Sbjct: 414 MRSISRAKSEAYKRYDL---ISQMKARLRQ 440 >UniRef50_A7H3H2 Putative TraG n=1 Tax=Campylobacter jejuni subsp. doylei 269.97 RepID=A7H3H2_CAMJD Length = 488 Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats. Identities = 91/479 (18%), Positives = 187/479 (39%), Gaps = 46/479 (9%) Query: 1 MMPRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGG 60 + R+ + CA LL A +A+++S + N LG + + G ++ Q +G+ GG Sbjct: 4 LKKRVVISAIACAFLL--PSALNANLSSFIQ---NNLGSSITSENSGYYKSQVSGFISGG 58 Query: 61 SLYARTQV-KNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFF 119 S R + ++ S+T P N GC GID G FS++N E L + +K+I S A Y F Sbjct: 59 SSRIRWGGGETIRPFSVTAPSFNVGCSGIDMIFGGFSYLNFEYLVKKLKKIASAAPSYAF 118 Query: 120 DLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGI---IGGLFPRTQVSQQKVCQD 176 +AL T + +T D L+K+A+ INSMN +CQ G + S Q Sbjct: 119 QMALSTLCKDCQTIMDELEKIANAINSMNFDTCQMTTNWTNKFGKMLSSNAESGQNDSWL 178 Query: 177 IAGESNIFADWAASRQGCTVGGK--SDSVRDKASDKDKERVTKNINIMWNALSKNRM--- 231 + + + + + D++ + + ++ K +I+ + K + Sbjct: 179 SSFAKGMEGTAQTVQNFVKEANAFVNGTTPDESGETNAAKILKQGSIIQKVIEKGKASFF 238 Query: 232 --FDGNKELKEFVMTLTGSLV-------------FGPNGEITPLSARTTDRSIIRAM--M 274 G + ++ + + G LV ++ + + A+ Sbjct: 239 AEAFGEDQYEDILRGVFGDLVAYTEKSTSVTSKEMSDPEKVMLIGPTLNTDKFLEALWNK 298 Query: 275 EGGTAKI------SHCN-DSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTP 327 G I + D + + ++ D ++S + + +I K + + Sbjct: 299 NGENKSITLEFTAYTISKDENGLYQEPVGKKTKVTIDKDIRSLLIEKFKAIVAKIKAKSA 358 Query: 328 LDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQ-ARAM 386 LDD +K I++ +PV L ++ + +++ ++ ++ EL + + Sbjct: 359 LDDADKNLINAAPLPVADILNIEASTELNG---DAVHEFVALLMVDAFVNELFNEFVTNI 415 Query: 387 VATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQD----ALLVVDRQMSYMRQQLSA 441 D D++ +A Q + A++ ++Q+ +R+ +S Sbjct: 416 NTVQGLDPKFSSDHKDDLAKFNAAVAKVQETTRTLLSENAQAIIRDNQQVDSIRKIISN 474 >UniRef50_Q74BB6 Conserved domain protein n=3 Tax=Desulfuromonadales RepID=Q74BB6_GEOSL Length = 494 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 81/469 (17%), Positives = 165/469 (35%), Gaps = 65/469 (13%) Query: 31 NQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGIDA 90 + + + ++T P ++G GY GGS AR + L + +LP + +GCGGID Sbjct: 27 SGWVDDWVQQKSSTSPSYYEGSKRGYYTGGSFSARWANTDDHLFTASLPKLKSGCGGIDM 86 Query: 91 YLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNLS 150 +LG FSF+N + L + ++ I+S A FD+AL+T P++ L+ + +NS+ L+ Sbjct: 87 FLGGFSFLNVDYLVQKLQNILSAAPAAAFDIALKTLAPQVADTIKTLEAITDRLNSLQLN 146 Query: 151 SCQAAQGIIGG-LFPRTQVSQQKVCQDIAGESNIF-------------ADWAASRQGCTV 196 C+AA+ ++ P + V + ++ F + S Q Sbjct: 147 DCKAAKALVATSASPFSSVMSDSLKAEMKTAQTDFMVSSGAKDLYQDVSKLFESEQKANA 206 Query: 197 GGK---------SDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFVMTLTG 247 G K S + + ++ + +++ N SK M N + + V G Sbjct: 207 GNKPGVPGTTQTSATSATAGCPAEVLQIFGDGSVLENLASKKGM---NSDYVKLVRGFIG 263 Query: 248 SLVFGPNGEITP-----LSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTIS 302 +V + + + G + + C + Sbjct: 264 DVVIQSPATTGTTYQAQYVPPCDKNNSFDSFISGSA---QGRDTAGACADIT-------D 313 Query: 303 RDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQ 362 + L + + SI K S T L E+ F+ ST + V L + + +I + Sbjct: 314 ANKNLMVYVAGKMQSIAGKIKSKTALTADEEAFLKSTPLSVGLILKNATATNTESEVIGK 373 Query: 363 LTDYIGYDILLQY----------IQELIQQARAMVATGNYDEA----VIGHINDNMNDAT 408 L + +QE+ + + + + + + M Sbjct: 374 LAELTARAYGYYMLLDLFGRAVQLQEMARNIMSTQKGNKSGASPETCQLALLGEGMQHIQ 433 Query: 409 ----------RQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRY 447 + + +A+ ++ + M + + + R+ Sbjct: 434 TLEEKTLQLLTVAQQSYANAASEINAVEMIVQNMKKFDDTVFSELSDRF 482 >UniRef50_Q19ND6 Pilus assembly protein n=8 Tax=Enterobacteriaceae RepID=Q19ND6_ECOK1 Length = 492 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 95/447 (21%), Positives = 175/447 (39%), Gaps = 30/447 (6%) Query: 4 RIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLY 63 K LL+ ++ A +A+ ++ M FN + +T P + GGS+ Sbjct: 29 NFKKLLLS-LSVCAAILAPTANADNAMRNIFNGMMT---STSPATFSTATRTGIVGGSMS 84 Query: 64 ARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLAL 123 RT N L+SM+ P + GC GID +LGSFS ING+QL + + I AA Y F++A+ Sbjct: 85 YRTTNVNTNLVSMSFPKASVGCNGIDVFLGSFSMINGDQLVQVARGIAQGAAIYAFNVAV 144 Query: 124 QTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGI----IGGLFPRTQVSQQKVCQDIAG 179 + + +Q +N SC A +G + Sbjct: 145 SAICADCAATINDIQNKLQALNKFAKDSCNATYSFLSENVGTPSQFANSVSSGPASILGS 204 Query: 180 ESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIM-WNALSKNRMFDG---- 234 + + D+ +S + V+ K ++ E+ + N+ M + + K M G Sbjct: 205 INGLIPDFGSSMTKSPEAV-TSQVKAKDPEEFAEKFSGNLFYMSFMDIDKGTMNIGGVTE 263 Query: 235 --NKELKEFVMTLTGSLV--FGPNGEITPLSARTTDRSIIRAMME---GGTAKISHCN-- 285 +L E +M+L G+++ + GE + R + ++ +M GG+ K+ C+ Sbjct: 264 LSGYKLAEQLMSLVGTVIINWDSKGEKAGMEVRPSTMTVTDYIMGPPAGGSIKMLKCSPA 323 Query: 286 ---DSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIP 342 S + + + + V LK I+ LL ++Q K ++D + D E IS IP Sbjct: 324 PDPSSPRKAQCLVMSEVNDGGFKGLKDTISDLLLNVQKKIINDVRVSDDELRIISYIGIP 383 Query: 343 VFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHIND 402 + Q Y I + +++Q A ++T + + D Sbjct: 384 --TIIDSLQTFEAPEG--YAYIQDISTIAATSLVINMLRQVEAKISTMSIPSESLSGKRD 439 Query: 403 NMNDATRQIAAFQSQVQVQQDALLVVD 429 ++N T ++ + + Sbjct: 440 DLNRLTDNLSKQVKAAYELSHSQVGTS 466 >UniRef50_C1SHD2 Conjugative relaxosome accessory transposon protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHD2_9BACT Length = 453 Score = 263 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 90/465 (19%), Positives = 182/465 (39%), Gaps = 50/465 (10%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 + + + L +TP A A+ ++ +F+ A+++ V+ Q G+A GS Sbjct: 1 MFRTINVLLIALIMTPLAHAN---WVDDWFD----ANSSANASVYISQERGFATMGSFQG 53 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R + K+ L+++ P ++ GCGGID ++G FSF+N + L ++I+ A FDLAL Sbjct: 54 RLKTKSDYLMTVAPPKLSVGCGGIDIFMGGFSFLNPDYLVDKAERILRAAPYVAFDLALN 113 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLF--------PRTQVSQQKVCQD 176 KD + + + +N + + C+AA+G++ V Q+ + Q Sbjct: 114 EFCTSCSAIKDRAENIINALNGLQIDECKAAKGLVVSANHLIHGREDQAVDVLQKNMVQG 173 Query: 177 IAGESNIFADWAASRQGCTVGGKSDSV-RDKASDKDKERVTKNINIMWNALSKNRMFDGN 235 + +F D + +V S + KE + K+ +I+ SK M N Sbjct: 174 LDT---LFTDAKKDVEDKPGANFKKAVDNSGMSAELKEELKKSGSILDRIGSKVGM---N 227 Query: 236 KELKEFVMTLTGSLVFG-PNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVV 294 + L G + + I D + + ++EG +S + S C + Sbjct: 228 TTQIRQIRALIGDVQVNLTDNAINAFYYPGCDEATYKKLIEG--KPLSKSSYSSGCAESS 285 Query: 295 ADTPVTISRDNALKSQITKLLASIQNKAVS--DTPLDDKEKGFISSTTIPVFKYLVDPQM 352 L ++ LL SI +K + +T L +EK F+ T PV L + Sbjct: 286 GSN---------LTDEVQNLLQSISDKITTNKNTSLSAEEKNFVGITPYPVKSTLNTASL 336 Query: 353 LGVSNSMI--YQLTDYIGYDILLQYIQELIQQARAMVATGNY-----DEAVIGHINDNMN 405 G + + + + ++ ++ + D + ++ ++ Sbjct: 337 YGDNQVAVIRDTMLQPTLHGYAFAIFSNILVNSKTSIEEYKALVDSGDGKLTKQLSAALD 396 Query: 406 DATRQIAAFQSQVQVQQ-------DALLVVDRQMSYMRQQLSARM 443 + ++ A S+ + + LL + + M+Q + + Sbjct: 397 ELLKKTADKGSEARESYLATISDTENLLAILERYGNMKQVIDDTL 441 >UniRef50_C5F065 Pilus assembly protein n=2 Tax=Helicobacter pullorum MIT 98-5489 RepID=C5F065_9HELI Length = 489 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 77/481 (16%), Positives = 163/481 (33%), Gaps = 55/481 (11%) Query: 4 RIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLY 63 + + ++V ++ A+A ++ ++ N L A G ++ QA G GS Sbjct: 5 KTRKIIVSVVLAAMLSNTANASLSDFVS---NSLDTAVLNQNAGYFKSQAGGLMSLGSSR 61 Query: 64 ARTQVKN--VQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDL 121 R N ++ P +N GC GID G FS++N + + +K+I + A + F + Sbjct: 62 IRFGGNNGAFTPFNVQAPSLNIGCSGIDMVFGGFSYLNFDNIVEKLKKITTAAPAFAFKI 121 Query: 122 ALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGI---IGGLFPRTQVSQQKVCQDIA 178 AL T + T L+K+A+ IN MN +C A I G +S + Sbjct: 122 ALSTLCKDCDTIMTELEKIANAINGMNFDTCTALNNWNDKITGSLASNGISTGIGAGVVG 181 Query: 179 --------GESNIFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNR 230 G +D+ A G + D + K+ I+ ++ Sbjct: 182 DWLSGFGEGLGKSISDFTAYIHGQGGNNQGKDGSDAVKNVFKQGSLIKY-IVEGEKNRTG 240 Query: 231 MFDG--NKELKEFVMTLTGSLV--FGPNGE-----ITPLSARTTDRSIIRAMMEGG---- 277 F + ++ + L G ++ NGE + + A+ +G Sbjct: 241 FFKTAMGADYEDILRDLLGDVIGFTEKNGEEVKFRKELIQGSLDITRFVEALYKGTAGEK 300 Query: 278 ---TAKISH-CNDSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEK 333 ++ + ++D + + + I + I K + L ++ Sbjct: 301 AELEIQVWNIVENNDGTIAPPTQGTPKKVKVDNFIDAIMDRINEIIIKGRGNNKLSADDQ 360 Query: 334 GFISSTTIPVFKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYD 393 F+ S + P + + + + I ++ I + + + ++ G D Sbjct: 361 SFLGSLSQPTLQLIN--AAIANPDLNISAYSEVIAAQSFADLMNIVATEIEVEISKGIND 418 Query: 394 EAVIGH-------------------INDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSY 434 +++ +D QI Q+ + + R+++ Sbjct: 419 QSIAKREGGGVTALSSGDIGEITKTFSDRFTKLRNQINVVIKQINEKNQTAIHTLREINR 478 Query: 435 M 435 + Sbjct: 479 L 479 >UniRef50_A9AU08 TraH family protein n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AU08_BURM1 Length = 493 Score = 255 bits (651), Expect = 3e-66, Method: Composition-based stats. Identities = 91/501 (18%), Positives = 186/501 (37%), Gaps = 69/501 (13%) Query: 3 PRIKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSL 62 R+K L++ A ++ V A A + +D+ +N+T PG + + G+ Sbjct: 1 MRVKKFLLIVA-MVVVPHLAFAGILADLGSMV-----MANSTAPGAMTTKDRVGVFMGAF 54 Query: 63 YARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLA 122 R+ +K V L++ P I+AGCGGID Y GSFSFIN +QL + +Q+ ++AAG F A Sbjct: 55 TMRSPIKAVNLVTFDPPRIDAGCGGIDLYGGSFSFINSQQLIQIFRQVAADAAGLAFKAA 114 Query: 123 LQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESN 182 +++ P + Q + ++N++ +SCQ A I+ + + SN Sbjct: 115 IKSISPSLDALITEFQTLLQNLNNLAKNSCQMAHLIVDPIDNALSNAVNGDGNTGGTNSN 174 Query: 183 IFADWAASRQGCTVGGKSDSVRDKASDKDK-----ERVTKNINIMWNALSKNRMFDGNKE 237 +F D + S A++ ++V + L+ DG+ + Sbjct: 175 MFTDVMGGLKSYLSDANSYFKNQSANNPKSGNPLVKKVVASGASSIMGLAGLPNVDGSSD 234 Query: 238 LKEFVMTLTGSLVFG--------------PNGEITPLSARTTDRSI------------IR 271 +L +++ S+R + +I + Sbjct: 235 NPSDPNSLNNMVLYALLGYNIDAAPCNSLNQAGQGIQSSRPANNTIGQVTCSGPAVMTLD 294 Query: 272 AMMEGG---------TAKISHCNDSDK----------CLK--------VVADTPVTISRD 304 +++GG ++ C + + C + V + V Sbjct: 295 DLVKGGGTGSLRPDVPLQLYRCANPNGSVFGGVDNQICTQMQVISFNYVGIEGWVNSMLF 354 Query: 305 NALKSQITKLLASIQNKA--VSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQ 362 ++ ++ SI + V+ T ++ F+ +P+ L ++ + Sbjct: 355 GSVDPALSVAGNSIVGQINSVNSTTFSAQQVAFMKQAGVPLAGLLSKTSNTATRVAIAQR 414 Query: 363 LTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQ 422 L +I + + + L + A + T YD + D + A Q+ Sbjct: 415 LAPHIVDCVAARIGEVLYKGANLIQTTPGYD--LTDDQKDRIKTLRTDYLAKQNACNN-S 471 Query: 423 DALLVVDRQMSYMRQQLSARM 443 DALL + +++ + ++ + Sbjct: 472 DALLRIITEINEGTRFVNTNI 492 >UniRef50_C0QUW1 Putative uncharacterized protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUW1_PERMH Length = 467 Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 74/491 (15%), Positives = 161/491 (32%), Gaps = 79/491 (16%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLY- 63 +K L+ A + AD+N+ +++ + PG + GS Sbjct: 1 MKKLIASLAFASLLIAPTKADINATLDKIVGSSYYL----PPGEIKSPTTNTYTLGSYSF 56 Query: 64 -ARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLA 122 R + N ++S+ P C G D G S +N + Q + + + + Sbjct: 57 RLRNDLLNRPVLSLRPPQATFSCSGADFDAGMLSMLNLNTFGDMLSQAGT-SVAWGIMIG 115 Query: 123 LQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESN 182 L ++P I A L + A + +SC I L S + Q S Sbjct: 116 LVYSLPGIGDAFQKLNEWARMFQQLISNSCMIGTQIGKNLGSSIWESGRTNAQGKGVASG 175 Query: 183 IFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDG---NKELK 239 + + A+++ D + T I + + +++G + E Sbjct: 176 SVSSFEAAQKEFI---------------DLIKTTGEIKKFFGTIPYGPLYEGGWTDTETA 220 Query: 240 EFVMTLTGSLVF-----------------GPNGEITPLSARTTDRSIIRAMMEGGTAKIS 282 + V +L G L + ++ T + ++ ++ G T +I Sbjct: 221 DLVASLFGVLEWRAVDTAGNDCTDTSCLKNAKIKVVYYPPLTNN---LQDIINGATMQIY 277 Query: 283 HCNDSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSDTP------------LDD 330 HCN T + ++ + ++ K V+ + Sbjct: 278 HCNWG------YDTNIGTFKCNGGVEVSNKDIPEGLRQKIVNRIDGIVDDIIDGTFMANP 331 Query: 331 KEKGFISSTTIP----VFKYLVDPQMLGVSN---SMIYQLTDYIGYDILLQYIQELIQQA 383 + +I S +P V YL + G ++ S +Y +++ I +L I Sbjct: 332 DDAQWIKSVPLPNFPEVINYLAILKKQGFTSQYNSALYGVSELISSMMLKVLIDNAYASL 391 Query: 384 RAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARM 443 ++ + ++ A + I ++Q+ D + + Q +Y+ Q++++ Sbjct: 392 SSIGRYFTN-----KDMPKDLAGAQQNITKVKAQI----DDYIQKNIQSNYITIQVASQT 442 Query: 444 LSRYQNNYHFG 454 ++ G Sbjct: 443 YRSIKSAVEKG 453 >UniRef50_B7J815 Pilus assembly protein TraH, putative n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J815_ACIF2 Length = 559 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 94/557 (16%), Positives = 176/557 (31%), Gaps = 125/557 (22%) Query: 3 PRIKPLL--VLCAALLTVTPAASADVNSD---MNQFFNKLGFASN-TTQPGVWQGQAAGY 56 P +K + VL A L +V + + S M F N++ AS+ T G G Sbjct: 6 PELKKITKGVLVATLTSVLTSGFLNAESQALGMQNFVNQMFIASSGATAAGSGNGVT--- 62 Query: 57 AYGGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAG 116 GG ART + +I+ + PDI+AGCGGI+ + GSF FING++ +++I A G Sbjct: 63 YSGGYFEARTPLSGANVIAFSPPDISAGCGGINLFFGSFHFINGQEFMALLREIGQQALG 122 Query: 117 YFFDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGG-----LFPRTQVSQQ 171 Y F LA+ + ++K D+N+ ++CQ A+GI G + +++ Sbjct: 123 YAFQLAIDAMCHQCGALLSMIEKDIQDMNNALKNTCQLAKGIFNGDDMGDIAQVVNQTRR 182 Query: 172 KVCQDIAGESNIF-------------------ADWAASRQGCTVGGKSDSVRDKASDKDK 212 + + S+IF +W + G++ + Sbjct: 183 VMSSAVGDVSDIFKGTEPAMSSTIASDETSISTNWTELMTSVGLNGQAAKTPVPKTAPQA 242 Query: 213 ERVTKNINIMWNA------------LSKNRMFDGNKE--------------------LKE 240 + N+ W A LS M E KE Sbjct: 243 YSLP-QYNMFWKAINAADTQDMLLGLSDTTMVASVPEAVSTTNSNICATTTETTNACTKE 301 Query: 241 FVMTLTGSLVF---GPNGEITPLSARTTDRS-------------------IIRAMMEG-G 277 +M+L G+L+ A T +++ ++ ++ G Sbjct: 302 ILMSLVGTLIILPGESTNSSNASGAATQNQTNNTATGNINSNTLAWGASLNLQQLVNGIS 361 Query: 278 TAKISHCNDSD-------------KCLKVVADTPVTISRDNALKSQITKLL--------- 315 A + C + C+ + T + +K+ + L Sbjct: 362 KAPVWQCTYRNIGGTHYQTFGPVTGCIGPLGTTTLGGMGYVGIKTAVRGYLLGGYVGGVY 421 Query: 316 -ASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVDPQMLGVSNSMIYQLT-------DYI 367 + N F L D + ++ + + YI Sbjct: 422 HNGLVNDLNMGITPSAATLAFEQGMPYGTATILQDAETGNQNDPGVGLMAQIAKLLEPYI 481 Query: 368 GYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQDALLV 427 + +++ + G Y+ + + + A + ++ Sbjct: 482 VDEFAVKFGDAALDAV------GVYNGQNHIIVPPDYKFYLAALNAQIQTYETKESLNDK 535 Query: 428 VDRQMSYMRQQLSARML 444 R + Q AR+ Sbjct: 536 NVRLAEELVQSAKARIA 552 >UniRef50_A0L355 Putative uncharacterized protein n=1 Tax=Shewanella sp. ANA-3 RepID=A0L355_SHESA Length = 464 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 69/475 (14%), Positives = 157/475 (33%), Gaps = 54/475 (11%) Query: 5 IKPLLVLCAALLTVTPAASADVNSDMNQFFNKLGFASNTTQPGVWQGQAAGYAYGGSLYA 64 +K +++ SA S +N ++++ AS + + G GS Sbjct: 1 MKKKVIVALLCC----PLSATAASGLNNLWDQMLSAS--SGATSYSGAKRDGFSLGSASV 54 Query: 65 RTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGEQLQRFVKQIMSNAAGYFFDLALQ 124 R + N +++++ P + + C GID + GS S I E+L + + I + A Y F LA+ Sbjct: 55 RIKTTNEKIVAVRAPYLQSSCKGIDFFGGSLSIIKREELVQMARSIAAAAPMYAFQLAMG 114 Query: 125 TTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQV-SQQKVCQDIAGESNI 183 P+ L K + +N C+ + +P QV S +K+ + + Sbjct: 115 MLCPDCNAILADLAKRLNALNDFISKDCEEWADLAEQQWPSLQVQSDRKMWKAYNDSAGA 174 Query: 184 -FADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKE-LKEF 241 F +A+S + D+ + + + ++ + + Sbjct: 175 WFDSFASSTVERSSIDSHSKAAQLTQAGDEMQFNSVYETFMQSETTVPTLSSDRHVVAQM 234 Query: 242 VMTLTGSLVFGPNGEITPLSARTTD--------RSIIRAMMEGG-------TAKISHCND 286 +MT+ G+ ++ + +T ++ +D + ++ + + ++ C Sbjct: 235 LMTILGTEIYKFDSTLTASASAGSDAVSQSFSPQVSLKDLYQPQATTSMAVAKQMVVCEQ 294 Query: 287 ----SDKCLK------VVADTPVTISRDNALKSQITKLLA------SIQNKAVSDTPLDD 330 KCL ++D S I L+ SI D Sbjct: 295 AQFADSKCLSAKVATVPISDPRYLDSFYRFYGDAICGLVDSNLVGSSIMAIYAQKGNYSD 354 Query: 331 KEKGFISSTTIPVFKYLVDPQMLGV-SNSMIYQLTDYIGYDILLQYIQELIQQARAMVAT 389 + +++ + + V + +++ + D Q + L A M +T Sbjct: 355 SQAQIMANMRSEFEDIIKRASTVNVINTGNCKFISEAMAIDATQQLLDGLRIAASKMAST 414 Query: 390 GNYDEAVIGHINDNMNDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARML 444 + ++ + + M Q+L +++ Sbjct: 415 DKGQRGAFS-------------SKLLEKIDALSLEREEMANRRREMEQELLSQIN 456 >UniRef50_B2I402 TraH family protein n=1 Tax=Acinetobacter baumannii ACICU RepID=B2I402_ACIBC Length = 293 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 36/292 (12%), Positives = 95/292 (32%), Gaps = 24/292 (8%) Query: 187 WAASRQG-CTVGGKSDSVRDKASDKDKERVT--KNINIMWNALSKNRMFDGNKELKEFVM 243 + +++ D S++D + N+ W ALSK +++ +M Sbjct: 1 MTEAWTKNKGNSQQTNQTLDNLSNQDPNMKNHIPDGNLTWKALSKISALPTDQKY--LIM 58 Query: 244 TLTGSLVF--GPNGEITPLSARTTDRSIIRAMMEGG-----TAKISHCNDSDKCLKVVAD 296 + G++V P + A I ++ + C D + + + Sbjct: 59 AMVGTVVITEDPTNGTPKIVAYPRRIDNISTLIGTSASSQAQFPVWRCVDGTREDECTSL 118 Query: 297 TPVTISRDNALKSQITKLLASIQNKAVSDTPLDDK--EKGFISSTTIPVFKYLVDPQMLG 354 ++ + S + + + + + P+ D FI+ T IP++K + G Sbjct: 119 VQDNLTTNETFYSLVDEKMRLLADAISQRRPITDAGGIIQFINLTDIPIYKIIALNTRYG 178 Query: 355 ----VSNSMIYQLTDYIGYDILLQYIQELIQQARAMV------ATGNYDEAVIGHINDNM 404 + + Q + I L Y + + A + + I + + Sbjct: 179 GDSTAAMMALDQYKELIAAKYALAYFEITSKMVEAALGNIIAGTADAVTAQEVTKIRETL 238 Query: 405 NDATRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGGS 456 + + + + + +++ +M + L + + + + F + Sbjct: 239 DKTRADLNQSTQVAYARSNVSFNIAQEVQHMERTLHSNLAPALRQSIVFANT 290 >UniRef50_D1ZXJ6 Whole genome shotgun sequence assembly, contig_3001 n=1 Tax=Sordaria macrospora RepID=D1ZXJ6_SORMA Length = 237 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 13/225 (5%) Query: 243 MTLTGSLVFGPNGEITPLSA----RTTDRSIIRAMMEGG---TAKISHCNDSD--KCLKV 293 MT+ G++++ T + A +A+++G + C+ +D CLK Sbjct: 6 MTMVGTIIYDATRPRTAVGAFQFIAPASWDTYQALLDGTASAPTDVWQCDTTDDKGCLKP 65 Query: 294 VADTPVTISRDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISSTTIPVFKYLVD--PQ 351 T ++IS + AL++++ K + S+ K S+ L E + T+IP++K LV Sbjct: 66 TP-TKLSISTNEALRTRVLKAMDSMSGKIRSNAALSGDEIALLGMTSIPLYKILVVNEAA 124 Query: 352 MLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNY-DEAVIGHINDNMNDATRQ 410 +G+S L + + D+L+ + ++ A + ++ + Sbjct: 125 HMGLSGGDRATLAEMVAIDMLMSMLDRMLDTISQAQAGAKFVSTDEFKAWRAQVDSVKTE 184 Query: 411 IAAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGG 455 ++ ++ Q V + +M L M + + FG Sbjct: 185 LSRRSEKMAGQISNTYRVIQYTQFMESTLKNTMSPQLSASLRFGR 229 >UniRef50_D2U4N5 Conjugal transfer pilus assembly protein n=1 Tax=Arsenophonus nasoniae RepID=D2U4N5_9ENTR Length = 106 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 75/104 (72%), Positives = 90/104 (86%) Query: 352 MLGVSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQI 411 MLGVSNS++YQL DYIGYDILLQY+QELIQQAR M++ GNY + VI + +N+N AT I Sbjct: 1 MLGVSNSVLYQLADYIGYDILLQYMQELIQQARGMLSIGNYPQPVIDTLLENLNQATAMI 60 Query: 412 AAFQSQVQVQQDALLVVDRQMSYMRQQLSARMLSRYQNNYHFGG 455 FQS+VQVQQDALLVVDRQ+SYMRQQ+S++ML+RYQNNYHF G Sbjct: 61 NQFQSRVQVQQDALLVVDRQISYMRQQVSSKMLTRYQNNYHFHG 104 >UniRef50_A4V6R7 Putative exported protein n=2 Tax=Pseudomonas RepID=A4V6R7_PSEFS Length = 467 Score = 55.4 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 66/483 (13%), Positives = 145/483 (30%), Gaps = 58/483 (12%) Query: 1 MMPR---IKPLLVLCAALLTVTPAASADVN--------------SDMNQFFNKLGFASNT 43 M + IK +L L + + T +A ++ D+ F + S Sbjct: 1 MKMKSRYIKSILALTVSAVMSTNTLAASIDFGSDGSDSPWTRRMDDVTGLFGESVKGSAV 60 Query: 44 TQPGVWQGQAAGYAYGGSLYARTQVKNVQLISMTLPDINAGCGGIDAYLGSFSFINGE-- 101 G + + + ++ GC G++ ++G+ Sbjct: 61 NDAN-----KGGSFSFDTFTPFQDQRTSVVNGYGATEVGVGCNGLNLST----VLDGQLG 111 Query: 102 QLQRFVKQIMSNAAGYFFDLALQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGG 161 Q Q V+Q + NA L + P IK+ D L + ++ +C + + Sbjct: 112 QYQEMVEQFIQNAPALAIMY-LAYSQPTIKSVIDQLNSVGQFGLDLSNMTCSGVRSLADK 170 Query: 162 LFPRTQVSQQKVCQDIAGESNIFADWAASRQGCTV------GGKSDSVRDKASDKDKERV 215 + Q D + + + +G T G D+A+ + Sbjct: 171 A--YDEKKQTLAEADCTVDEGYKSSKCMAGEGLTGSLLNQMGEFKQKTSDRANAMMGKVS 228 Query: 216 TKNINIM-WNALSKNRMFDGNKELKEFVMTLTGSL---------VFGPNGEITPLSARTT 265 + ++ WN+ G TGS+ P L + Sbjct: 229 SATGGLVGWNSSVSGGTNKGAGTGSGTGTGGTGSVKASVSGKSCSNDPQDGSAGLVLAAS 288 Query: 266 DRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTISRDNALKSQITKLLASIQNKAVSD 325 + GG N+ V T + L ++ +L ++ + + Sbjct: 289 ELGCDDIKKYGGLVPSYGFNNDA--ASVTPRTENIENLSKTLTTEYMELYKAVYSADAAS 346 Query: 326 TPLDDKEKGFISSTTIPV----FKYLVDPQMLGVSNSMIYQLTDYIGYDILLQYIQELIQ 381 K IS I V +Y+ + + I ++ + + ++I Sbjct: 347 FKNTQAYKDLISRADIVVSENEHQYMRNLARSSPA-MFISTERQLSTLGMMKE-LDDVIS 404 Query: 382 QARAMVATGNYDEAVIGHINDN-MNDATRQIAAFQSQVQVQQDALLVVDRQMSYM--RQQ 438 + V++G ++ ++D ++ +A + Q Q + + + QQ Sbjct: 405 KIEIGVSSGIANQPDNVILSDEVISRTKTSVAGLRQQYIALQARIKHDQERNKVLSSVQQ 464 Query: 439 LSA 441 ++ Sbjct: 465 VTN 467 >UniRef50_Q8CP76 Extracellular matrix-binding protein ebh n=5 Tax=Staphylococcus epidermidis RepID=EBH_STAES Length = 9439 Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats. Identities = 38/328 (11%), Positives = 110/328 (33%), Gaps = 20/328 (6%) Query: 123 LQTTVPEIKTAKDFLQKMASDINSMNLSSCQAAQGIIGGLFPRTQVSQQKVCQDIAGESN 182 ++ PE+ A L+ + N+ + + Q Q I+ + P ++ + + Sbjct: 3062 IKAVQPELDKAIAMLKNKEN--NNALVQAKQQLQQIVNEVDPTQGMTTDTANNYKSKKRE 3119 Query: 183 IFADWAASRQGCTVGGKSDSVRDKASDKDKERVTKNINIMWNALSKNRMFDGNKELKEFV 242 + ++Q G ++ ++ RV + IN + A KN + +L+ Sbjct: 3120 AEDEIQKAQQIINNGDATEQQITNETN----RVNQAINAINKA--KNDLRADKSQLENAY 3173 Query: 243 MTLTGSLVFGPNGEITPLSARTTDRSIIRAMMEGGTAKISHCNDSDKCLKVVADTPVTIS 302 L ++ + + ++I + +S+ + VA + Sbjct: 3174 NQLIQNVDTNGKKPASIQQYQAARQAIETQYNNAKSEAHQILENSNPSVNEVAQALQKV- 3232 Query: 303 RDNALKSQITKLLASIQNKAVSDTPLDDKEKGFISST-TIPVFKYLVDPQMLG------- 354 A++ ++ + +QNK +++ L + S P+ + + Sbjct: 3233 --EAVQLKVNDAIHILQNK-ENNSALVTAKNQLQQSVNDQPLTTGMTQDSINNYEAKRNE 3289 Query: 355 VSNSMIYQLTDYIGYDILLQYIQELIQQARAMVATGNYDEAVIGHINDNMNDATRQIAAF 414 +++ D + I + + +A N + + + A +Q+ Sbjct: 3290 AQSAIRNAEAVINNGDATAKQISDEKSKVEQALAHLNDAKQQLTADTTELQTAVQQLNRR 3349 Query: 415 QSQVQVQQDALLVVDRQMSYMRQQLSAR 442 + ++ ++ + + Q+++ Sbjct: 3350 GDTNNKKPRSINAYNKAIQSLETQITSA 3377 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.135 0.338 Lambda K H 0.267 0.0414 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,039,875,335 Number of Sequences: 3077464 Number of extensions: 76765590 Number of successful extensions: 262129 Number of sequences better than 1.0e-01: 70 Number of HSP's better than 0.1 without gapping: 151 Number of HSP's successfully gapped in prelim test: 26 Number of HSP's that attempted gapping in prelim test: 261542 Number of HSP's gapped (non-prelim): 213 length of query: 458 length of database: 1,040,396,356 effective HSP length: 132 effective length of query: 326 effective length of database: 634,171,108 effective search space: 206739781208 effective search space used: 206739781208 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 95 (41.2 bits)