Phyre 2 alignment of P0ABC7 with c3i08C_

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Job Description | P0ABC7
Confidence | 3.55% | Date | Thu Jan 5 11:15:10 GMT 2012
Rank | 99 | Aligned Residues | 34
% Identity | 18% | Template | c3i08C_
PDB info | PDB header:signaling protein | Chain: C: PDB Molecule:neurogenic locus notch homolog protein 1; | PDBTitle: crystal structure of the s1-cleaved notch1 negative2 regulatory region (nrr)
Resolution | 3.20 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 319 | 320 | . | . | . | . | . | . |  |  | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | P | E | I | T | R | E | R | L | . | . | Y | I | E | T | M | E | K | V | L | G | N | T | R | K | V | L | V | N | D | K | G | G | N | L | M | V
Query Conservation |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | E | Q | L | R | N | S | S | F | H | F | L | R | E | L | S | R | V | L | H | T | N | V | V | F | K | R | D | A | H | G | Q | Q | M | I | F
Template Known Secondary structure |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  | B |  | T | T |  |  | B |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 1583 | . | . | . | . | . | . | 1590 | . | . | . | . | . | . | . | . | . | 1600 | . | . | . | . | . | . | . | . | . | 1610 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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