Phyre 2 alignment of P0ABC7 with c2lcvA_

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Job Description | P0ABC7
Confidence | 3.65% | Date | Thu Jan 5 11:15:10 GMT 2012
Rank | 93 | Aligned Residues | 33
% Identity | 18% | Template | c2lcvA_
PDB info | PDB header:transcription regulator | Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; | PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | I | G | K | Y | T | M | D | R | I | L | T | E | G | R | T | V | I | R | S | D | T | Q | R | E | L | E | E | T | I | R | P | Y | D | M
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | V | S | T | A | T | V | S | R | A | L | . | M | N | P | D | K | V | S | Q | A | T | R | N | R | V | E | K | A | A | R | E | V | G | Y
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | T | . | T |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 21 | . | . | . | . | . | . | . | . | 30 |  | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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