17/01/2012 17:58:54 : INFO  : Run start: Tue Jan 17 17:58:52 GMT 2012
17/01/2012 17:59:02 : INFO  : Initialised job
17/01/2012 17:59:04 : INFO  : Renaming log file 'phyre2_20120117_175851.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/f5e17a38d761092e/phyre_20120117_175851.log'
17/01/2012 17:59:06 : INFO  : Initialised job:
Sequence
>batch____
MAIKKRSATVVPGASGAAAAVKNPQASKTSFWGELPQHVMSGISRMVPTLIMGGVILAFS
QLIAYSWLKIPAEIGIMDALNSGKFSGFDLSLLKFAWLSQSFGGVLFGFAIPMFAAFVAN
SIGGKLAFPAGFIGGLMSTQPTQLLNFDPSTMQWATSSPVPSTFIGALIISIVAGYLVKW
MNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITPFGGWINGGIRTVLTAAGEKGAL
MYAMGIAAATAIDLGGPINKAAGFVAFSFTTDHVLPVTARSIAIVIPPIGLGLATIIDRR
LTGKRLFNAQLYPQGKTAMFLAFMGISEGAIPFALESPITAIPSYMVGAIVGSTAAVWLG
AVQWFPESAIWAWPLVTNLGVYMAGIALGAVITALMVVFLRLMMFRKGKLLIDSL

17/01/2012 17:59:08 : INFO  : Checked sequence
17/01/2012 17:59:12 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 17:59:14 : INFO  : PSI-BLAST 3 iterations
17/01/2012 18:02:04 : INFO  : PSI-BLAST 5 iterations
17/01/2012 18:06:01 : INFO  : Finished PSI-BLAST
17/01/2012 18:06:04 : INFO  : Running Buildali to generate a3m file
17/01/2012 18:19:49 : INFO  : Converting to HMM
17/01/2012 18:19:53 : INFO  : Calibrating HMM
17/01/2012 18:20:13 : INFO  : Searching HMM database
17/01/2012 18:27:17 : INFO  : Finished buildali
17/01/2012 18:27:19 : INFO  : Predicting secondary structure
17/01/2012 18:27:31 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 18:27:34 : INFO  : Predicting Disordered regions
17/01/2012 18:27:40 : INFO  : Predicted Disorder (Disopred)
17/01/2012 18:27:42 : INFO  : Running memsat_svm check
17/01/2012 18:32:04 : INFO  : Running memsat_svm full
17/01/2012 18:37:36 : INFO  : Predicted Transmembrane (memsat_svm) ID 'f5e17a38d761092e'
17/01/2012 18:37:39 : INFO  : Initialising fold library search
17/01/2012 18:37:45 : INFO  : Initialised search input
17/01/2012 18:37:49 : INFO  : Building Ensemble models
17/01/2012 18:37:56 : INFO  : Building hh.c3qnqD_.model.1.pdb
17/01/2012 18:38:20 : INFO  : Building c3qnqD_.1.pdb
17/01/2012 18:38:42 : INFO  : Building c2voyB_.2.pdb
17/01/2012 18:39:03 : INFO  : Building d1u7ga_.3.pdb
17/01/2012 18:39:26 : INFO  : Building d3dtub2.4.pdb
17/01/2012 18:39:49 : INFO  : Building d1ffya1.5.pdb
17/01/2012 18:40:10 : INFO  : Building d1fftb2.6.pdb
17/01/2012 18:40:27 : INFO  : Building c2ketA_.7.pdb
17/01/2012 18:40:48 : INFO  : Building d3ehbb2.8.pdb
17/01/2012 18:41:11 : INFO  : Building c3nd0A_.9.pdb
17/01/2012 18:41:33 : INFO  : Building c2ht2B_.10.pdb
17/01/2012 18:41:55 : INFO  : Building c3hd6A_.11.pdb
17/01/2012 18:42:17 : INFO  : Building c2ap7A_.12.pdb
17/01/2012 18:42:40 : INFO  : Building c1svfC_.13.pdb
17/01/2012 18:43:03 : INFO  : Building d1ilea1.14.pdb
17/01/2012 18:43:27 : INFO  : Building d1j9ia_.15.pdb
17/01/2012 18:43:49 : INFO  : Building d1rzsa_.16.pdb
17/01/2012 18:44:13 : INFO  : Building d1qu3a1.17.pdb
17/01/2012 18:44:38 : INFO  : Building c3a0bK_.18.pdb
17/01/2012 18:45:02 : INFO  : Building c3a0bk_.19.pdb
17/01/2012 18:45:27 : INFO  : Building c3a0hk_.20.pdb
17/01/2012 18:46:18 : INFO  : Finished HH model building
17/01/2012 18:46:21 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 18:47:29 : INFO  : html domain output complete ID 'f5e17a38d761092e'
17/01/2012 19:13:50 : INFO  : Run end  : Tue Jan 17 19:13:48 GMT 2012
