Phyre 2 alignment of P0AG34 with d1joga_

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Job Description | P0AG34
Confidence | 1.29% | Date | Thu Jan 5 11:27:59 GMT 2012
Rank | 44 | Aligned Residues | 37
% Identity | 11% | Template | d1joga_
SCOP info | Four-helical up-and-down bundle | Nucleotidyltransferase substrate binding subunit/domain | Family 1 bi-partite nucleotidyltransferase subunit
Resolution | 2.40

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 86 | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . |  |  | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | G | I | Q | Q | W | R | A | A | G | A | I | D | L | K | S | L | A | S | T | Q | . | . | S | R | R | H | L | F | Q | R | A | V | F | V | N | L | T | N
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | S | L | K | X | X | K | R | Q | L | Q | Q | D | A | I | N | T | D | D | I | G | A | Y | G | F | K | D | I | L | R | E | A | L | R | F | G | L | I | G
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  | S |  |  |  | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 56 | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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