BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (330 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Prote... 656 0.0 UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteo... 380 e-104 UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivi... 333 6e-90 UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiell... 333 6e-90 UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobaci... 323 4e-87 UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromona... 302 1e-80 UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacteri... 302 1e-80 UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacteri... 296 7e-79 UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteob... 276 8e-73 UniRef50_Q3JAH2 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 270 8e-71 UniRef50_B5ES65 RNA polymerase sigma factor n=2 Tax=Acidithiobac... 255 2e-66 UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter ... 254 3e-66 UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromo... 251 2e-65 UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 251 2e-65 UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria Rep... 250 4e-65 UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria Re... 250 5e-65 UniRef50_Q5DYR1 RNA polymerase sigma factor n=3 Tax=Aliivibrio R... 250 5e-65 UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 248 1e-64 UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia ... 247 3e-64 UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 245 1e-63 UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacter... 244 4e-63 UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacte... 244 4e-63 UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmic... 241 2e-62 UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacter... 239 1e-61 UniRef50_A7MZX8 RNA polymerase sigma factor n=1 Tax=Vibrio harve... 239 1e-61 UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundu... 239 1e-61 UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilo... 238 2e-61 UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella ... 238 2e-61 UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria Re... 236 6e-61 UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermot... 236 7e-61 UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia R... 236 7e-61 UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/V... 236 1e-60 UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium ... 235 2e-60 UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD su... 231 2e-59 UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi ... 231 3e-59 UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 230 5e-59 UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomyceta... 228 3e-58 UniRef50_A6D4Y7 RNA polymerase sigma factor n=1 Tax=Vibrio shilo... 226 1e-57 UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomyceta... 225 1e-57 UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicro... 224 4e-57 UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyano... 224 4e-57 UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. ... 223 7e-57 UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 222 1e-56 UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 222 1e-56 UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi... 222 2e-56 UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae ... 220 5e-56 UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacter... 219 1e-55 UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Strep... 218 2e-55 UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacter... 217 4e-55 UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily... 217 6e-55 UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 216 7e-55 UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacter... 216 1e-54 UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteri... 216 1e-54 UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphapr... 215 2e-54 UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 215 2e-54 UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteo... 215 2e-54 UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicro... 214 3e-54 UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicro... 214 3e-54 UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 214 3e-54 UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacter... 214 4e-54 UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia bal... 214 4e-54 UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi ... 214 5e-54 UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacter... 213 6e-54 UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea... 213 7e-54 UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Prote... 213 8e-54 UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteo... 213 1e-53 UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 T... 213 1e-53 UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 212 1e-53 UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter ... 212 1e-53 UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria Re... 211 2e-53 UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 211 2e-53 UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria Re... 211 2e-53 UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellu... 211 3e-53 UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacte... 211 3e-53 UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria Rep... 210 4e-53 UniRef50_Q21UR2 RNA polymerase sigma factor n=5 Tax=Burkholderia... 210 4e-53 UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes... 210 5e-53 UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria Re... 210 6e-53 UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacter... 209 8e-53 UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteri... 209 8e-53 UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamy... 209 9e-53 UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 209 1e-52 UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter ... 208 2e-52 UniRef50_D0YYF5 RNA polymerase sigma factor RpoS n=1 Tax=Photoba... 208 2e-52 UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 208 2e-52 UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 208 2e-52 UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteri... 207 3e-52 UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacte... 207 3e-52 UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium ... 207 4e-52 UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexac... 207 5e-52 UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmatac... 206 6e-52 UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacter... 206 7e-52 UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 206 1e-51 UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptospora... 205 1e-51 UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma ... 205 2e-51 UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 204 3e-51 UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermob... 204 3e-51 UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 202 1e-50 UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus... 202 1e-50 UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci R... 202 2e-50 UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteob... 202 2e-50 UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsu... 201 2e-50 UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 201 4e-50 UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Prote... 200 6e-50 UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobact... 200 6e-50 UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 200 6e-50 UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 200 6e-50 UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteo... 200 7e-50 UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily... 199 9e-50 UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothr... 199 1e-49 UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia Re... 199 1e-49 UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi ... 199 1e-49 UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium ... 199 1e-49 UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister in... 199 1e-49 UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 199 1e-49 UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 199 1e-49 UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacter... 199 2e-49 UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilo... 199 2e-49 UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 198 2e-49 UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistip... 198 2e-49 UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellul... 198 3e-49 UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogace... 197 3e-49 UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrel... 197 5e-49 UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax... 197 5e-49 UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia... 196 7e-49 UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 196 7e-49 UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 196 9e-49 UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular ... 196 1e-48 UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasma... 196 1e-48 UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes R... 196 1e-48 UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular or... 195 1e-48 UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece R... 195 1e-48 UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 195 2e-48 UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 T... 195 2e-48 UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellul... 195 2e-48 UniRef50_Q1PZV7 RNA polymerase sigma factor n=1 Tax=Candidatus K... 195 2e-48 UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellul... 194 3e-48 UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily... 194 3e-48 UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacter... 194 4e-48 UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia Re... 194 5e-48 UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 T... 193 6e-48 UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily... 193 8e-48 UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcale... 192 1e-47 UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium ... 191 2e-47 UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actino... 191 2e-47 UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderi... 191 3e-47 UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 188 2e-46 UniRef50_A6F9J5 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 reg... 188 2e-46 UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria R... 188 2e-46 UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobact... 187 3e-46 UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacter... 187 3e-46 UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 187 4e-46 UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema Re... 187 4e-46 UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycet... 187 4e-46 UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacte... 187 6e-46 UniRef50_B7VSN6 RNA polymerase sigma factor n=7 Tax=Vibrio RepID... 186 1e-45 UniRef50_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydro... 186 1e-45 UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria Rep... 186 1e-45 UniRef50_A8ZPW9 RNA polymerase sigma-70 factor, putative n=10 Ta... 186 1e-45 UniRef50_B1ZRN1 RNA polymerase sigma factor n=1 Tax=Opitutus ter... 186 1e-45 UniRef50_Q2JMC5 RNA polymerase sigma factor n=2 Tax=Synechococcu... 186 1e-45 UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacter... 185 2e-45 UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella... 185 2e-45 UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomyceta... 185 2e-45 UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 184 3e-45 UniRef50_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus K... 184 3e-45 UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 182 1e-44 UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacte... 182 1e-44 UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycopla... 182 2e-44 UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=... 181 2e-44 UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacteriu... 181 4e-44 UniRef50_C6JPD1 RNA polymerase sigma factor n=2 Tax=Fusobacteriu... 181 4e-44 UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus ... 180 5e-44 UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 180 5e-44 UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 180 6e-44 UniRef50_B2VA41 RNA polymerase sigma factor n=2 Tax=Hydrogenothe... 180 6e-44 UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteob... 180 7e-44 UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E... 179 1e-43 UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea s... 179 1e-43 UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 179 1e-43 UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 ... 179 2e-43 UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 178 2e-43 UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia... 178 3e-43 UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobi... 177 4e-43 UniRef50_B5YES0 RNA polymerase sigma factor n=2 Tax=Dictyoglomus... 177 5e-43 UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochlori... 177 7e-43 UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera... 176 7e-43 UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma h... 176 8e-43 UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus P... 176 9e-43 UniRef50_B2KCU1 RNA polymerase sigma factor n=1 Tax=Elusimicrobi... 176 1e-42 UniRef50_C7LZI2 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 176 1e-42 UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria Rep... 176 1e-42 UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium ca... 175 2e-42 UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderi... 174 3e-42 UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31... 174 4e-42 UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 174 5e-42 UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsi... 174 5e-42 UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus ... 173 7e-42 UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroi... 172 1e-41 UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 ... 172 1e-41 UniRef50_A1TWY8 RNA polymerase, sigma 32 subunit, RpoH n=2 Tax=M... 172 1e-41 UniRef50_A5UVI3 RNA polymerase sigma factor n=1 Tax=Roseiflexus ... 171 3e-41 UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasm... 170 5e-41 UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 170 6e-41 UniRef50_A6FGX1 DNA-directed RNA polymerase, sigma subunit n=1 T... 170 8e-41 UniRef50_UPI0001C32423 RNA polymerase, sigma 70 subunit, RpoD su... 169 1e-40 UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragmen... 169 1e-40 UniRef50_A6GB19 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 169 2e-40 UniRef50_Q2T2N0 RNA polymerase sigma factor n=32 Tax=pseudomalle... 168 2e-40 UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis ... 168 3e-40 UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium o... 167 3e-40 UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 T... 167 3e-40 UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 167 4e-40 UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosipho... 167 6e-40 UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis... 167 6e-40 UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium o... 164 3e-39 UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece s... 164 3e-39 UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, s... 164 3e-39 UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter... 164 4e-39 UniRef50_C0R0V4 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 164 4e-39 UniRef50_B7FPT1 Predicted protein n=2 Tax=Bacillariophyta RepID=... 164 5e-39 UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 163 7e-39 UniRef50_B5RMW2 RNA polymerase sigma factor n=22 Tax=Borrelia Re... 163 8e-39 UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepI... 163 8e-39 UniRef50_A4AF82 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 162 1e-38 UniRef50_B4U904 RNA polymerase sigma factor n=5 Tax=Aquificales ... 162 1e-38 UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma m... 162 2e-38 UniRef50_C7LZN3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 162 2e-38 UniRef50_C1DVG2 RNA polymerase sigma factor n=4 Tax=Hydrogenothe... 161 3e-38 UniRef50_A9GLY8 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 160 9e-38 UniRef50_D1AXM9 RNA polymerase sigma factor n=5 Tax=Fusobacteria... 159 1e-37 UniRef50_Q4A5V6 RNA polymerase sigma factor n=3 Tax=Mycoplasma R... 159 1e-37 UniRef50_A9G730 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 158 2e-37 UniRef50_C0ZIC6 RNA polymerase sigma factor n=1 Tax=Brevibacillu... 157 6e-37 UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 157 6e-37 UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderia... 157 7e-37 UniRef50_A3ZWN2 RNA polymerase sigma factor n=1 Tax=Blastopirell... 157 7e-37 UniRef50_A6ECH2 RNA polymerase sigma factor n=2 Tax=Pedobacter s... 156 1e-36 UniRef50_UPI0001BC2D98 RNA polymerase, sigma 32 subunit, RpoH n=... 155 1e-36 UniRef50_Q3AYF6 Possible type II alternative RNA polymerase sigm... 154 3e-36 UniRef50_D1HUY6 Whole genome shotgun sequence of line PN40024, s... 154 4e-36 UniRef50_Q9ZSL6 Sigma-like factor n=2 Tax=Arabidopsis thaliana R... 153 7e-36 UniRef50_A5GV05 Alternative RNA polymerase sigma factor, sigma-7... 153 8e-36 UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmiu... 153 1e-35 UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, s... 152 1e-35 UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q... 152 1e-35 UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID... 152 2e-35 UniRef50_Q4BV73 RNA polymerase sigma factor n=1 Tax=Crocosphaera... 151 2e-35 UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax f... 151 3e-35 UniRef50_B0VH07 RNA polymerase sigma factor n=1 Tax=Candidatus C... 151 3e-35 >UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Proteobacteria RepID=RPOS_SHIFL Length = 330 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/330 (99%), Positives = 330/330 (100%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVE+EPSDNDLAEEELLSQGATQRVLDATQL Sbjct: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQL 60 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI Sbjct: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR Sbjct: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD 240 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD Sbjct: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD 240 Query: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE Sbjct: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 Query: 301 RVRQIQVEGLRRLREILQTQGLNIEALFRE 330 RVRQIQVEGLRRLREILQTQGLNIEALFR+ Sbjct: 301 RVRQIQVEGLRRLREILQTQGLNIEALFRK 330 >UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KI17_9GAMM Length = 367 Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/281 (64%), Positives = 229/281 (81%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY 109 A Q LD TQLYL EIG+ PLL+A+EE ++AR +GD A+R+RMIESNLRLVV IARRY Sbjct: 87 ARQITLDPTQLYLNEIGFVPLLSADEEKHYARLVQKGDEAARKRMIESNLRLVVNIARRY 146 Query: 110 GNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 +RG++LLDLIEEGNLGL+RAVEKFDPERGFRFSTYATWWIRQTIER IMNQ RTIRLPI Sbjct: 147 LHRGMSLLDLIEEGNLGLMRAVEKFDPERGFRFSTYATWWIRQTIERGIMNQARTIRLPI 206 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD 229 H+VK+LN LR AREL+ +LDH+P+ +EIA + K +VSR++ LNER++S+D PLG + Sbjct: 207 HVVKDLNGCLRAARELTQQLDHDPTTQEIASRTHKTATEVSRLMGLNERVSSMDAPLGPN 266 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLE 289 S+ ++ + +ADE P + QDDD+ S+ WL EL+ KQREV+ RRFGLLGY++ TLE Sbjct: 267 SDSSVAETIADEHGCDPSEQIQDDDVHDSVAHWLDELSEKQREVVVRRFGLLGYDSCTLE 326 Query: 290 DVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 +VG+EIGLTRERVRQIQVE L+RLR IL+ QGL+ +AL ++ Sbjct: 327 EVGQEIGLTRERVRQIQVEALKRLRRILERQGLSADALLKQ 367 >UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQZ1_9GAMM Length = 359 Score = 333 bits (853), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 165/269 (61%), Positives = 208/269 (77%) Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 LDA Q+YL +I Y PLLT EEE +AR A GD + RRRMIE NLRLVVKIARRY NRGL Sbjct: 83 LDAIQIYLRDIEYRPLLTPEEERKYARLARDGDESGRRRMIECNLRLVVKIARRYLNRGL 142 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 LLDLIEEGNLGL+ AVEKFDPERGFRFSTYATWWIRQTIERA+MNQ RTIR+P+H+ KE Sbjct: 143 PLLDLIEEGNLGLMHAVEKFDPERGFRFSTYATWWIRQTIERALMNQGRTIRIPVHVSKE 202 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKAL 234 L ++ R AR L+ +L +P+ EE+A++L KPV D+ ++ ++E TS+D P G D E++L Sbjct: 203 LRMHARIARNLTQELGRDPTEEELAQRLGKPVADIQKLRAMSEPSTSMDLPPGPDGERSL 262 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 DILAD P +D D++ + +WL EL+ KQREVL RRFGL G+E +TLE VG E Sbjct: 263 TDILADVNAQEPSSLLEDQDIQHLVDEWLGELDYKQREVLVRRFGLHGFERSTLEQVGAE 322 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGLN 323 IG+TRERVRQIQ++ L+RLR +L+++G+ Sbjct: 323 IGVTRERVRQIQMDALKRLRRLLESRGMK 351 >UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiella burnetii RepID=RPOS_COXBU Length = 352 Score = 333 bits (853), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 159/273 (58%), Positives = 210/273 (76%) Query: 53 RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNR 112 R D TQ+YL E+G+ PLL A+EE+ ARR +GD +R++MIE+NLRLVVKIAR Y NR Sbjct: 76 RSSDPTQIYLRELGFQPLLNAKEELKIARRVHKGDPKARKQMIEANLRLVVKIARHYVNR 135 Query: 113 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172 GL LDLIEEGNLGL+ AVEKFDPERGFRFSTYATWWIRQTIERAIMNQ+RT+RLPIH++ Sbjct: 136 GLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQTIERAIMNQSRTVRLPIHVI 195 Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232 KELNVYLRTA++L+ ++DHE + E++A +DKPV ++ R++ L TS+D P+ D +K Sbjct: 196 KELNVYLRTAKKLTQEVDHEATPEDVAHLIDKPVQEIRRIMDLAPSATSIDVPISEDGQK 255 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 +L+D LAD+ P Q+ D++ I +WL +L+ + REV+ RFGL E TLE VG Sbjct: 256 SLVDTLADDNNIDPARLIQNVDLQDHIERWLAQLDERHREVVILRFGLHENEKGTLEAVG 315 Query: 293 REIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 + +GLTRERVRQIQ++ L++LR IL+ +G+ E Sbjct: 316 KAVGLTRERVRQIQIDALQQLRHILEMEGVTGE 348 >UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L243_HALNC Length = 343 Score = 323 bits (829), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 157/289 (54%), Positives = 219/289 (75%), Gaps = 2/289 (0%) Query: 42 EEELLS--QGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNL 99 EEEL + + +D +LYL ++ LLTAEEEV ++RRA GD ++R++MI NL Sbjct: 53 EEELTTTFSASDSESVDPVRLYLRDVETERLLTAEEEVIYSRRAQSGDESARQKMIVCNL 112 Query: 100 RLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM 159 RLV+KIARRY NRGL LLDLIEEGN+GL+RAVEKFDPERGFRFSTYATWWIRQTIER +M Sbjct: 113 RLVIKIARRYMNRGLDLLDLIEEGNIGLMRAVEKFDPERGFRFSTYATWWIRQTIERGLM 172 Query: 160 NQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERI 219 NQ+RT+RLP+H+VKE++ + R AR+++ + E +AE+IA+ LD+PV++V +++ NER Sbjct: 173 NQSRTVRLPVHVVKEVHTFNRAARKIAQNQNAEVTAEQIADHLDRPVNEVLKIMAFNERQ 232 Query: 220 TSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFG 279 +S D+PL GD E +LLD++ D++ N P++ QD + + + + +L +KQREVL RR+G Sbjct: 233 SSFDSPLKGDGEFSLLDLIPDQESNQPDELLQDAGVHGFLDQLIAQLESKQREVLVRRYG 292 Query: 280 LLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALF 328 L GYE TLE+VG +G+TRERVRQIQ+E +RRL+ + + G+ E +F Sbjct: 293 LRGYETHTLEEVGNHLGVTRERVRQIQLEAVRRLKSLAKKAGVTAEVIF 341 >UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D27_DECAR Length = 309 Score = 302 bits (774), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 152/273 (55%), Positives = 195/273 (71%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D TQLYL EIG PLLT EE+ +R GD ++R+RMIE NLRLVV IA+ Y NRG+ Sbjct: 37 DVTQLYLSEIGAKPLLTPAEELATSRLVREGDFSARQRMIEHNLRLVVNIAKHYLNRGIP 96 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 LLDLIEEGNLGLI A+EKFDPERGFRFSTYATWWIRQ IER IMNQ+RTIRLP+HIVKE+ Sbjct: 97 LLDLIEEGNLGLIHALEKFDPERGFRFSTYATWWIRQNIERGIMNQSRTIRLPVHIVKEI 156 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 NV LR R L + + E IA +D+PV DV R+L LNE I S+D PL D + Sbjct: 157 NVVLRAMRHLESADKRDSTVERIALLIDRPVADVRRILSLNEHIASLDAPLEIDPNHTMA 216 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 +++AD+ E+ PE Q ++ + WL +L +QR V+ RR+GL G + ATL+ + ++ Sbjct: 217 EVIADDGESDPESLLQSSEVGSLVDDWLEQLTERQRSVIERRYGLSGADLATLDVIACDL 276 Query: 296 GLTRERVRQIQVEGLRRLREILQTQGLNIEALF 328 GLTRERVRQIQ+EGL RLR+I++ ++ ++L Sbjct: 277 GLTRERVRQIQMEGLDRLRKIIKRGNISRDSLL 309 >UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2H8_LISDA Length = 294 Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 141/277 (50%), Positives = 199/277 (71%), Gaps = 2/277 (0%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D QLYL +I PLLT +EE+ ++R+AL GD S++ MIESNLRLVV IA++Y G+ Sbjct: 16 DVIQLYLKDIALKPLLTKDEEILYSRKALVGDAKSKKVMIESNLRLVVSIAKKYRGSGMQ 75 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 L D+I+EGN+GLI AVEKFDPERGFRFSTYATWWI+QTIERAI NQ RTIRLP+H+ KE+ Sbjct: 76 LSDMIDEGNIGLITAVEKFDPERGFRFSTYATWWIKQTIERAIHNQARTIRLPVHVSKEI 135 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD--SEKA 233 N LRT ++L + EP+ EE+A++LDK V+D+S +L + + S D + + + + Sbjct: 136 NTILRTHKQLMKTNNSEPTHEEVADELDKSVEDISALLSYDAPVMSFDQTISSEDSNSQT 195 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 + ++D+ +NGP+ +D+++ + L LN + RE+L RRFGL+GYEA TL+ V Sbjct: 196 MASFISDDSDNGPDAQIDKNDIQKLTLTMLEGLNPRDREILCRRFGLMGYEAQTLQQVAE 255 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 E+GLTRER+RQ+QV L +L+ +LQ + ++E LF E Sbjct: 256 EVGLTRERIRQLQVSSLNKLKNVLQREKYDLELLFAE 292 >UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacterium RepID=Q1Z2N9_PHOPR Length = 291 Score = 296 bits (758), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 141/274 (51%), Positives = 192/274 (70%), Gaps = 1/274 (0%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D QLYL EI PLLT EE+ ++R++L GD +++ MIESNLRLVV IA++Y G+ Sbjct: 14 DVIQLYLREIALKPLLTKHEEILYSRKSLTGDKEAKKVMIESNLRLVVSIAKKYRGSGMQ 73 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 L DLI+EGN+GLI +VEKFDPERGFRFSTYATWWI+QTIER I NQ RTIRLP+H+ KE+ Sbjct: 74 LSDLIDEGNIGLITSVEKFDPERGFRFSTYATWWIKQTIERCIHNQARTIRLPVHVSKEI 133 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 N +RT ++L K + EP+ EE+AE+L++ VDD+S +L + I S D + D+ + Sbjct: 134 NTIIRTHKQLMKKNNQEPTREEVAEKLERSVDDISSVLAYDAPIVSFDQTINDDANSQSI 193 Query: 236 DI-LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 + +AD+ + PE DD+K + L LN + RE+L RRFGLLGYE TL+ V E Sbjct: 194 SVFIADDSSDKPESQVDKDDIKGLALAMLENLNQRDREILCRRFGLLGYEVQTLQQVANE 253 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGLNIEALF 328 +GLTRER+RQ+QV L++L+ L+ ++E LF Sbjct: 254 VGLTRERIRQLQVSSLKKLKNTLERDNYDLELLF 287 >UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteobacteria RepID=B3R1P5_CUPTR Length = 395 Score = 276 bits (706), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 146/280 (52%), Positives = 186/280 (66%), Gaps = 2/280 (0%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG 110 T+ D Q YL I PLL+A EE++F+ A GD A+R+ MIE NLRLVV IA+ Y Sbjct: 116 TELAADTVQHYLNRISIKPLLSAPEELHFSTLAKDGDFAARQVMIERNLRLVVSIAKGYL 175 Query: 111 NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH 170 NRG+ LLDLIEEGNLGL+ A+EKFDP RGFRFSTYATWWIRQ+IERAIMNQ RT+RLP+H Sbjct: 176 NRGVPLLDLIEEGNLGLMHAIEKFDPSRGFRFSTYATWWIRQSIERAIMNQARTVRLPVH 235 Query: 171 IVKELNVYLRTARELSH--KLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG 228 +++ELN LR R L + S E+IA L K D+V +L LNE TS+DTP Sbjct: 236 VIRELNQVLRAKRHLEKGGTDGRDASLEDIAHLLGKTPDEVQDVLALNEHTTSLDTPFDL 295 Query: 229 DSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATL 288 D +LLD L+DE P+ +++ + WL L+ K R V+ RRFGL E ATL Sbjct: 296 DPGSSLLDFLSDEHNAAPDQEVAHRELEGLMKLWLARLSEKHRYVVERRFGLNHIEPATL 355 Query: 289 EDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALF 328 E++ E+GLTRERVRQIQ E L +L+ +QG+ +A+ Sbjct: 356 EELAEEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL 395 >UniRef50_Q3JAH2 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3JAH2_NITOC Length = 303 Score = 270 bits (689), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 135/261 (51%), Positives = 189/261 (72%), Gaps = 1/261 (0%) Query: 60 LYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDL 119 LY+ E G PLL+AEEE ++AR A +GD +R +IESNLR+V+++A R+ NRGL L+DL Sbjct: 41 LYMREAGKVPLLSAEEERHYARLAQQGDREARNHIIESNLRIVIRMATRHINRGLPLMDL 100 Query: 120 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179 IEEGNLGLI AVEKF+PE GFRFSTYA+WWIRQ IERA+MNQTRTIR+PIH+ K++ Y Sbjct: 101 IEEGNLGLIDAVEKFNPELGFRFSTYASWWIRQAIERALMNQTRTIRVPIHVFKKIRCYQ 160 Query: 180 RTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILA 239 + AR + + EP EIA+ L +P++ + R L L S+D PL D++ L+D+L Sbjct: 161 KEARYFRQRYNIEPHLGEIAKLLHEPLERIQRYLSLQAPEISLDDPLSEDTDDCLVDLLP 220 Query: 240 DEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTR 299 DE+ N P + D K SI L +L +Q+E++ R+GL GYE TLE++G+++G+TR Sbjct: 221 DER-NNPAILWEIFDKKASIHNQLSQLPERQQEIIKCRYGLDGYEVTTLEEIGQKLGITR 279 Query: 300 ERVRQIQVEGLRRLREILQTQ 320 ERVRQIQ ++RLR+I++++ Sbjct: 280 ERVRQIQQTAIKRLRKIIESE 300 >UniRef50_B5ES65 RNA polymerase sigma factor n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ES65_ACIF5 Length = 316 Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 139/316 (43%), Positives = 199/316 (62%), Gaps = 7/316 (2%) Query: 11 LNEDAEFD-----ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEI 65 L EDA+ D E EV ++A + E + D + GA+ DA +LYL EI Sbjct: 2 LTEDADGDVPDALEEIAEVGQDEACLWPETPEFDAIADPAWEAGASDH-FDAIKLYLQEI 60 Query: 66 GYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG-NRGLALLDLIEEGN 124 G++PLLTAEEEV A +GD+ +R R++E NLRLVV+IARRY L LLDLIEEGN Sbjct: 61 GHNPLLTAEEEVSLGLSAQQGDITARNRLVECNLRLVVRIARRYQRQHTLPLLDLIEEGN 120 Query: 125 LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARE 184 LGLIRA E FDP RGFRFSTYATWWIRQ I+R IM Q+R +RLP HI+K L+ LR++R+ Sbjct: 121 LGLIRAAELFDPTRGFRFSTYATWWIRQNIDRGIMQQSRVVRLPTHIIKNLSAVLRSSRQ 180 Query: 185 LSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKEN 244 ++ + +P E++A+ + K V V L+ + R+ S+D P + +L L D + Sbjct: 181 IAQTMQGDPRVEDVAQVMGKSVAYVEDCLQQDRRVVSLDAPSRWEGSPSLAQTLVDADQA 240 Query: 245 GPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQ 304 + ++ D+++ I + L L+ + R +L RRFG+ G + A+L +G+E+G++ ERVRQ Sbjct: 241 DLGASLEEQDLQRQIHRALLGLDVRHRTILIRRFGIDGQDGASLSAIGKELGVSHERVRQ 300 Query: 305 IQVEGLRRLREILQTQ 320 +Q E L LR+ + Q Sbjct: 301 LQEEALDLLRQHTELQ 316 >UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATP3_RUBXD Length = 366 Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 128/267 (47%), Positives = 185/267 (69%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D+ ++YL EIG PLLT +E+ A+ RG S+ +++E+NLRLVV IA++Y NRG++ Sbjct: 95 DSIRMYLAEIGRVPLLTHADEIRLAKAISRGCKRSKDKLVEANLRLVVSIAKKYRNRGVS 154 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 LDLI+EGN+GLIRA EKFD +GF+FSTYATWWIRQ I RAI ++ RTIR+P+H+V+++ Sbjct: 155 FLDLIQEGNIGLIRAAEKFDYRKGFKFSTYATWWIRQAITRAIADKGRTIRIPVHMVEKV 214 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 N Y RT R ++ L EP+ EE+AE+L PV++V R+ +++R S++TP+G D +L Sbjct: 215 NKYHRTQRRMTQALGREPTDEEVAEELGVPVEEVLRLQEISQRSISLETPVGDDESSSLG 274 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D L D P D + +K + + L EL ++R+++ RFG+ TLE+VGRE Sbjct: 275 DFLEDASAVTPTDAVSESLLKLHLREALDELPERERQIIEMRFGMKDDRPRTLEEVGREF 334 Query: 296 GLTRERVRQIQVEGLRRLREILQTQGL 322 +TRERVRQIQ++ L LRE +TQ L Sbjct: 335 DITRERVRQIQMKTLNLLREQRRTQNL 361 >UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromonadales RepID=B9M4Z2_GEOSF Length = 358 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 126/267 (47%), Positives = 184/267 (68%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 DA +LYL EI + LLTA+EE A R RGD A+R +MIESNLRLVVKIA+RY NRGL Sbjct: 83 DAIKLYLREIQKTKLLTADEEKELAARIDRGDKAARDKMIESNLRLVVKIAKRYINRGLP 142 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 LDLIEEGN+GLI+AVE+F + RFSTYATWWIRQ+IERA++NQ+RTIRLP+H+ ++ Sbjct: 143 FLDLIEEGNMGLIKAVERFKLSKECRFSTYATWWIRQSIERALVNQSRTIRLPVHVSDDI 202 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 N LR REL K++ EPS +E+A ++ + R++ L ++ S++ P+G +++ L+ Sbjct: 203 NKMLRITRELLQKINREPSIKEVATAMEVNSAYIRRLMVLLKKTYSIERPMGENNDYFLI 262 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D + D P + +D + + + KW L+ ++++L RFGL + TL+ +GR Sbjct: 263 DTIEDTSTVSPAELLEDVNRYEMVSKWFDTLSDNEKKILTLRFGLDDKDPQTLDTIGRSF 322 Query: 296 GLTRERVRQIQVEGLRRLREILQTQGL 322 G+TRER+RQI+ + L +LR+I++ L Sbjct: 323 GVTRERIRQIEAKSLEKLRKIMEATEL 349 >UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=B8FTY1_DESHD Length = 372 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 127/268 (47%), Positives = 185/268 (69%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D ++YL EIG PLLTAEEE+ A+R +GD +++RR+ E+NLRLVV IA+RY RG+ Sbjct: 101 DPVRMYLKEIGRVPLLTAEEEIELAKRMEQGDESAKRRLAEANLRLVVSIAKRYVGRGML 160 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 LDLI+EGNLGLI+AVEKFD +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ + Sbjct: 161 FLDLIQEGNLGLIKAVEKFDYVKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETI 220 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 N +R +R+L +L EP+ EEIA Q+D V+ V ++++ + S++TP+G + + L Sbjct: 221 NKLIRVSRQLLQELGREPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLG 280 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D + DE P + +K+ + + L L ++ +VL RFGL TLE+VG+E Sbjct: 281 DFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEF 340 Query: 296 GLTRERVRQIQVEGLRRLREILQTQGLN 323 G+TRER+RQI+ + LR+LR +++ L Sbjct: 341 GVTRERIRQIEAKALRKLRHPSRSKKLK 368 >UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria RepID=C7NC70_LEPBD Length = 392 Score = 250 bits (639), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 129/288 (44%), Positives = 198/288 (68%), Gaps = 3/288 (1%) Query: 30 LVEQEPSDND---LAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG 86 VE E D++ L + +LL + V + ++YL EIG PLL+ EEE+ +A+R L G Sbjct: 92 FVESEIDDSEVDKLLQTDLLKMAESMDVDEPIKMYLREIGQIPLLSYEEEIDYAQRVLDG 151 Query: 87 DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 146 + +++++IESNLRLVV IA+++ NRGL +LDLI+EGN+GL++AVEKF+ E+GF+FSTYA Sbjct: 152 EEEAKQKLIESNLRLVVSIAKKHTNRGLKMLDLIQEGNMGLMKAVEKFEYEKGFKFSTYA 211 Query: 147 TWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPV 206 TWWIRQ I RAI +Q RTIR+P+H+++ +N + +R + + EP+AEE+AE+L+ PV Sbjct: 212 TWWIRQAITRAIADQGRTIRIPVHMIETINKIKKESRIILQETGKEPTAEELAEKLELPV 271 Query: 207 DDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFEL 266 + V +L +N+ S++TP+G + + L D + D+K P D T +K+ + + L L Sbjct: 272 EKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDKFANPYDATTRILLKEQLDEVLKTL 331 Query: 267 NAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 N ++ VL R+GL TLE+VG+ +TRER+RQI+V+ LR+LR Sbjct: 332 NEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKALRKLR 379 >UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria RepID=B0TG57_HELMI Length = 371 Score = 250 bits (638), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 125/268 (46%), Positives = 186/268 (69%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D ++YL EIG PLL+AEEE+ A+R GD A++RR+ E+NLRLVV IA+RY RG+ Sbjct: 100 DPVRMYLKEIGRVPLLSAEEEIELAKRMEEGDEAAKRRLAEANLRLVVSIAKRYVGRGML 159 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 LDLI+EGNLGLI+AVEKFD +G++FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ + Sbjct: 160 FLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETI 219 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 N +R +R+L + EP EEIA+++D PV+ V ++++ + S++TP+G + + L Sbjct: 220 NKLIRVSRQLLQEYGREPMPEEIAKEMDIPVERVREIMKIAQEPVSLETPIGEEEDSHLG 279 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D + D+ P + +K+ + + L L A++ +VL RFGL + TLE+VG+E Sbjct: 280 DFIEDQDAPAPAEAASFILLKEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEF 339 Query: 296 GLTRERVRQIQVEGLRRLREILQTQGLN 323 G+TRER+RQI+ + LR+LR +++ L Sbjct: 340 GVTRERIRQIEAKALRKLRHPSRSKKLK 367 >UniRef50_Q5DYR1 RNA polymerase sigma factor n=3 Tax=Aliivibrio RepID=Q5DYR1_VIBF1 Length = 294 Score = 250 bits (638), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 120/273 (43%), Positives = 183/273 (67%), Gaps = 3/273 (1%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG-- 113 D+ LYL EI LLTAEEE+ ++R +GDV++R +IESNLRLVVK+A +Y R Sbjct: 18 DSYSLYLKEINRYQLLTAEEELAYSRLYKKGDVSARNTLIESNLRLVVKVANKYRKRNQT 77 Query: 114 -LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172 LA+LD+IEEGNLGLI+A++KF+PE G+RFSTYA WWIR++IE A+ N +RT+RLP+HI Sbjct: 78 DLAILDIIEEGNLGLIKAIDKFNPELGYRFSTYAVWWIRESIESALFNHSRTVRLPVHIT 137 Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232 KELN YLR ARELS L EPS +I+ ++ VS+++ L + + + Sbjct: 138 KELNTYLRAARELSKSLKREPSIRDISTYCEEEQIKVSKIISLIPNQLTCHSACSDELSP 197 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 ++ ++ K P+ + ++++ ++ W+ LN +++E++ R+GL G + TLED+G Sbjct: 198 KFFELSSNNKALEPDSSLSQNNLEMNLSSWIDSLNYREKEIIINRYGLFGCKVKTLEDLG 257 Query: 293 REIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 +++ L++ERVRQIQ E L +L I + L++E Sbjct: 258 KDLDLSKERVRQIQSETLIKLNTIFKKNKLDLE 290 >UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1K5_THERP Length = 340 Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 129/261 (49%), Positives = 179/261 (68%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D +LYL +I +PLLT EEEV A+R GD + +R + SNLRLVV IA+RY RGL+ Sbjct: 68 DPLRLYLRDIAEAPLLTPEEEVELAKRIKEGDTEALQRFVRSNLRLVVSIAKRYVGRGLS 127 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 LLDLI+EGN+GL+RAVEKFD RG+RFSTYATWWIRQ I RAI +Q RTIRLP+H+ + Sbjct: 128 LLDLIQEGNIGLMRAVEKFDWRRGYRFSTYATWWIRQAITRAIADQGRTIRLPVHMTDSI 187 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 Y RT +L+ +L +P+ EEIAE + + +++++R +R S+D PL + E +L Sbjct: 188 TRYHRTTTQLAQELGRQPTPEEIAEAMSVQPEKIAQIVRAAQRAVSLDQPLSEEDETSLG 247 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D++ADE PE+ ++ M++ I + L L ++R VL R+GL E TL +VG + Sbjct: 248 DLIADELAQSPEELAEESLMRRDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLL 307 Query: 296 GLTRERVRQIQVEGLRRLREI 316 G++RERVRQI+ E LR+LR I Sbjct: 308 GISRERVRQIENEALRKLRRI 328 >UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0D3_ABIDE Length = 409 Score = 247 bits (631), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 122/259 (47%), Positives = 179/259 (69%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D ++YL EIG PLL+ +EEV A++ GD + R+ ESNLRLVV IA++Y RGL+ Sbjct: 137 DPVKIYLKEIGNYPLLSMDEEVELAKKIAEGDQYATDRLTESNLRLVVSIAKKYVGRGLS 196 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 LDLI+EGNLGLI+AV+KFD +G++FSTYATWWIRQ I R+I +Q+RTIR+P+H+ + + Sbjct: 197 FLDLIQEGNLGLIKAVDKFDYSKGYKFSTYATWWIRQAITRSIADQSRTIRIPVHMSEVI 256 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 N R +R L +L EP+ EEIA++++ PV+ V +++++ S+DTP+G + + L Sbjct: 257 NKAYRISRSLLQELGREPTEEEIAKEMNLPVEKVREIMKISADPISLDTPIGEEDDSHLG 316 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D + D+ GPED ++ I K L L+ +++ VL RFGLL TLE+VG+E Sbjct: 317 DFIKDDTIMGPEDAAAYTMLQDQIQKLLTTLSEREQRVLILRFGLLDGRTRTLEEVGKEF 376 Query: 296 GLTRERVRQIQVEGLRRLR 314 +TRER+RQI+ + LR+LR Sbjct: 377 NVTRERIRQIEAKALRKLR 395 >UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHQ6_9BACT Length = 322 Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 129/320 (40%), Positives = 204/320 (63%), Gaps = 16/320 (5%) Query: 23 EVFDEKALVEQEPSDNDLAE-EELLSQGATQRV------------LDATQLYLGEIGYSP 69 E+ D++ L+E+EP+D L+E EE+ ++ T L+ ++YL EI P Sbjct: 5 EIVDKEELLEEEPTD--LSEVEEIETKLDTCETEPEPKYEYSSEDLEVFKIYLNEISKYP 62 Query: 70 LLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIR 129 +LT E+E ++ +G S+ MI+ NLRLVV IA++Y NRG+ L+DL+EEGN+GL++ Sbjct: 63 VLTREQEGELSQGIEKGCNDSKETMIKCNLRLVVSIAKKYINRGMNLVDLVEEGNIGLLK 122 Query: 130 AVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKL 189 AVEKFD +GF+FSTYATWWIRQ IERAI+NQ R +R+P+H+ + ++ ++T EL KL Sbjct: 123 AVEKFDYTKGFKFSTYATWWIRQAIERAIINQCRMVRIPVHMSENISKVMKTQNELQQKL 182 Query: 190 DHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILA-DEKENGPED 248 EP+ E++ P+ + ++ ++ TS+D P+GGD L + +A DEK P Sbjct: 183 GREPTIHELSTACKMPLSTLKKVFDAIKQDTSLDMPVGGDESSTLHEFIADDEKYLDPYL 242 Query: 249 TTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVE 308 ++ K+ I KWL L+ ++ ++ RR+GL G + TLE +G ++G+TRERVRQI+ Sbjct: 243 KIENTSKKEIIFKWLTFLSDNEKTIIIRRYGLTGNDPETLESIGNDLGITRERVRQIEKR 302 Query: 309 GLRRLREILQTQGLNIEALF 328 L ++R +L T+ +++E L Sbjct: 303 VLSKMRNLLATKKISLEELL 322 >UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacteria RepID=RPOD_LISMO Length = 374 Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 128/294 (43%), Positives = 189/294 (64%), Gaps = 3/294 (1%) Query: 30 LVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA 89 LV++E DL + +S ++ D ++YL EIG LLTA+EE+ A+R GD+ Sbjct: 80 LVKEETESFDLTD---MSVPPGVKINDPVRMYLKEIGRVDLLTADEEIALAKRIEAGDIE 136 Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ R+ E+NLRLVV IA+RY RG+ LDLI+EGN+GL++AVEKFD +GF+FSTYATWW Sbjct: 137 AKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWW 196 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI +Q RTIR+P+H+V+ +N +R R L L +PS EEI E++D P + V Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKV 256 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 +L++ + S++TP+G + + L D + D+ P D + +K+ + L L + Sbjct: 257 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDR 316 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 + VL RFGL TLE+VGR G+TRER+RQI+ + LR+LR +++ L Sbjct: 317 EENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 370 >UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacteria RepID=RPSD2_BACSP Length = 377 Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 120/262 (45%), Positives = 181/262 (69%) Query: 53 RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNR 112 ++ D ++YL EIG PLL+A++EV A+R + GD ++RR+ E+NLRLVV IA+RY R Sbjct: 103 KINDPVRMYLKEIGRVPLLSADDEVELAKRIMNGDEEAKRRLAEANLRLVVSIAKRYVGR 162 Query: 113 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172 G+ LDLI+EGN+GLI+AVEKFD +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V Sbjct: 163 GMLFLDLIQEGNMGLIKAVEKFDHNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMV 222 Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232 + +N +R +R+L +L EP+ EEIA +++ V+ V ++++ + S++TP+G + + Sbjct: 223 ETINKLIRVSRQLLQELGREPTPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDS 282 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 L D + D++ P D + +K+ + L L ++ VL RFGL TLE+VG Sbjct: 283 HLGDFIEDQEALTPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVG 342 Query: 293 REIGLTRERVRQIQVEGLRRLR 314 + G+TRER+RQI+ + LR+LR Sbjct: 343 KVFGVTRERIRQIEAKALRKLR 364 >UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmicutes RepID=RPOD_STAAN Length = 368 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 127/303 (41%), Positives = 193/303 (63%), Gaps = 12/303 (3%) Query: 16 EFDENGVEVFDEKALVEQE----PSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLL 71 + ++N + + +EK + + PSD LS ++ D ++YL EIG LL Sbjct: 61 QLNDNDISLVNEKDSSDTDEKLNPSD--------LSAPPGVKINDPVRMYLKEIGRVNLL 112 Query: 72 TAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAV 131 +A+EE+ A+R +GD ++ R+ E+NLRLVV IA+RY RG+ LDLI+EGN+GLI+AV Sbjct: 113 SAQEEIELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAV 172 Query: 132 EKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDH 191 EKFD +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R R+L L Sbjct: 173 EKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGR 232 Query: 192 EPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQ 251 +P+ EEI E++D P + V +L++ + S++TP+G + + L D + D++ P D Sbjct: 233 DPAPEEIGEEMDLPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAA 292 Query: 252 DDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLR 311 + +K+ + L L ++ VL RFGL TLE+VG+ G+TRER+RQI+ + LR Sbjct: 293 YELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALR 352 Query: 312 RLR 314 +LR Sbjct: 353 KLR 355 >UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacteria RepID=RPOD_STRR6 Length = 369 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 127/291 (43%), Positives = 193/291 (66%), Gaps = 4/291 (1%) Query: 32 EQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASR 91 E+EP +L++E+L+ + +V D ++YL EIG PLLT EEE A GD+ ++ Sbjct: 77 EEEP---ELSDEDLIG-STSAKVNDPVRMYLKEIGVVPLLTNEEEKELALAVEAGDIEAK 132 Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 151 +R+ E+NLRLVV IA+RY RG+ LDLI+EGN+GL++AV+KFD +GF+FSTYATWWIR Sbjct: 133 QRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIR 192 Query: 152 QTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSR 211 Q I RAI +Q RTIR+P+H+V+ +N +R R L +L +P+ E+IAE++D D V Sbjct: 193 QAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVRE 252 Query: 212 MLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQR 271 +L++ + S++TP+G + + L D + DE P D T +++ + + L L ++ Sbjct: 253 ILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILDTLTDREE 312 Query: 272 EVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 VL RFGL + TLEDVG+ +TRER+RQI+ + LR+LR+ +++ L Sbjct: 313 NVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSKPL 363 >UniRef50_A7MZX8 RNA polymerase sigma factor n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MZX8_VIBHB Length = 287 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 121/262 (46%), Positives = 175/262 (66%), Gaps = 1/262 (0%) Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 L A +Y +IG LL+A++E +ARRA GD +R RMI SNLRLVV IA+RY RGL Sbjct: 15 LTAELIYFNDIGKYALLSADDEREYARRAKMGDADARTRMINSNLRLVVNIAKRYKGRGL 74 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 LDLI EGN+GL+RAVEKFDPE+GFRFSTYAT WIRQ+IER +MNQ RT+RLP+HI KE Sbjct: 75 TFLDLISEGNIGLMRAVEKFDPEKGFRFSTYATHWIRQSIERELMNQARTVRLPVHINKE 134 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKAL 234 L Y++ +ELS K + +IA+ L+ PV V + L ++ S+D+ + K L Sbjct: 135 LKRYVKATKELSQK-TQTITPRDIADHLEIPVSSVLKHLEFDKSTISLDSYQDKEEAKPL 193 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 + +A + PE ++D+ +++W+ EL + +L RR+GL G +L+ VG E Sbjct: 194 AETMACHRLRCPELELEEDNAFLMLLQWIEELEPDLKLILTRRYGLDGNTPTSLDTVGTE 253 Query: 295 IGLTRERVRQIQVEGLRRLREI 316 +G +RER+R +Q++G+++L+ + Sbjct: 254 LGYSRERIRHLQMQGIKKLQNL 275 >UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2K4_9PROT Length = 282 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 128/275 (46%), Positives = 176/275 (64%), Gaps = 1/275 (0%) Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 L+ +Y+ EI LLTA EE+ A+R GD + M+++NLRLVVKI+RRY NRG+ Sbjct: 8 LEPMAIYMREISRYELLTAAEEIALAKRIGAGDKEAHHYMVQANLRLVVKISRRYMNRGV 67 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 AL DLIEEGNLGLIRAVEKFD G RFSTYATWWIRQ +ERAIMNQ+RTIR+P+H+ KE Sbjct: 68 ALADLIEEGNLGLIRAVEKFDVTHGCRFSTYATWWIRQAVERAIMNQSRTIRVPVHVGKE 127 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKAL 234 L + L +L+ +P+ EIAE + V + ++ R S D L DS+ L Sbjct: 128 LYALTKHTNRLRSELERDPTDVEIAEAMGVSVQRIQELMGAAVRTDSADDMLHDDSDFTL 187 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL-LGYEAATLEDVGR 293 D+ ADE P D Q + + W+ +L K+REV+ R+GL + TLE +G Sbjct: 188 YDVTADEAAESPGDQMQTVLRNEILQVWMSKLEKKEREVVRLRYGLDDAGDPWTLEMIGE 247 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQGLNIEALF 328 ++G+TRER+RQIQV+ L++LR I+ + ++ E + Sbjct: 248 QLGVTRERIRQIQVQALQKLRRIVSQENIDFEEIL 282 >UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1 RepID=A6CZ07_9VIBR Length = 296 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 129/294 (43%), Positives = 188/294 (63%), Gaps = 11/294 (3%) Query: 31 VEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVAS 90 V+++ S ++E L+ GAT Y E+ LL+AE+E + AR+A GD + Sbjct: 6 VKEKSSHTTSGKDESLNIGAT---------YFKEVAGHDLLSAEDERHIARKARAGDTLA 56 Query: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 150 R+ +I SNLRLV++ A+RY NRGL DLI EGN+GLI+AV+KFDPE G+RFSTYA WWI Sbjct: 57 RQHLINSNLRLVIRTAKRYSNRGLDFYDLINEGNIGLIQAVDKFDPELGYRFSTYAVWWI 116 Query: 151 RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVS 210 +Q I+RAIMNQ RTIR+P+H+ K++ + A EL + +HEP++ EIAE+ + ++VS Sbjct: 117 QQAIDRAIMNQGRTIRVPVHVTKQIRECSKAAHELRKEGNHEPTSSEIAERTGRAPEEVS 176 Query: 211 RMLRLNERITSVDTPLG--GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 ++L+L+E+ S+D GD + L I D+ PE ++ ++++ + L Sbjct: 177 KLLKLSEQSLSLDNGWDEEGDKKDHLQTIDDDDVFELPEQDIVTQNLNKALIDLVDSLPD 236 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 KQR +L RFGLL + TLE VG +G+TRERVRQIQ + LR+ L+ Q L Sbjct: 237 KQRVILHHRFGLLDDDPKTLEQVGEIVGVTRERVRQIQKSAMETLRDKLKRQNL 290 >UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNX0_9FIRM Length = 373 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 124/259 (47%), Positives = 179/259 (69%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D ++YL EIG PLLTAEEEV A+R GD +++R+ E+NLRLVV IA+RY RG+ Sbjct: 102 DPVRMYLKEIGRVPLLTAEEEVALAKRMEAGDEEAQKRLAEANLRLVVSIAKRYVGRGML 161 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 LDLI+EGNLGLI+AVEKFD +G++FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ + Sbjct: 162 FLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETI 221 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 N +R +R+L +L EP+ EEIA++++ VD V ++++ + S++TP+G + + L Sbjct: 222 NKLIRVSRQLLQQLGREPTPEEIAKEMEIGVDRVREIMKIAQEPVSLETPIGEEEDSHLG 281 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D + D+ P D +K+ + L L ++ +VL RFGL A TLE+VG+ Sbjct: 282 DFIEDQDAPAPADAASFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNF 341 Query: 296 GLTRERVRQIQVEGLRRLR 314 G+TRER+RQI+ + LR+LR Sbjct: 342 GVTRERIRQIEAKALRKLR 360 >UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria RepID=A5IMD4_THEP1 Length = 407 Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 121/273 (44%), Positives = 180/273 (65%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG 110 + V D+ ++YL EIG PLLT +E ARRA GD ++ ++I SNLRLVV IA+RY Sbjct: 124 SSNVRDSIKMYLKEIGKIPLLTPAQERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYM 183 Query: 111 NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH 170 RGL+ DLI+EGN+GL++AVEKFD +G++FSTYATWWIRQ I RAI +Q RTIR+P+H Sbjct: 184 GRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPVH 243 Query: 171 IVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDS 230 +V+ +N R RE K EPS EE+A+ + KP + + +L + S+++P+G D Sbjct: 244 MVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDE 303 Query: 231 EKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLED 290 + ++ D +AD+ P+ M++ + K L L+ ++ VL R+GLL + TLE+ Sbjct: 304 DSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEE 363 Query: 291 VGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 VG+ +TRER+RQI+V+ LR+LR +++ L Sbjct: 364 VGQYFNVTRERIRQIEVKALRKLRHPSRSKYLK 396 >UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermotogaceae RepID=RPOD_THEMA Length = 399 Score = 236 bits (603), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 121/273 (44%), Positives = 180/273 (65%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG 110 + V D+ ++YL EIG PLLT +E ARRA GD ++ ++I SNLRLVV IA+RY Sbjct: 116 SSNVRDSIKMYLKEIGKIPLLTPAQERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYM 175 Query: 111 NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH 170 RGL+ DLI+EGN+GL++AVEKFD +G++FSTYATWWIRQ I RAI +Q RTIR+P+H Sbjct: 176 GRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPVH 235 Query: 171 IVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDS 230 +V+ +N R RE K EPS EE+A+ + KP + + +L + S+++P+G D Sbjct: 236 MVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDE 295 Query: 231 EKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLED 290 + ++ D +AD+ P+ M++ + K L L+ ++ VL R+GLL + TLE+ Sbjct: 296 DSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEE 355 Query: 291 VGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 VG+ +TRER+RQI+V+ LR+LR +++ L Sbjct: 356 VGQYFNVTRERIRQIEVKALRKLRHPSRSKYLK 388 >UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia RepID=Q3AEW8_CARHZ Length = 370 Score = 236 bits (603), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 126/294 (42%), Positives = 194/294 (65%), Gaps = 3/294 (1%) Query: 31 VEQEPSDNDLAEEEL-LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA 89 V+ +PSD D + +L + +G + D ++YL EIG PLLT EEE+ A+R GD Sbjct: 75 VDFKPSDIDEVDLDLTIPEGIA--IDDPVRMYLKEIGRVPLLTPEEEIELAKRKEEGDEE 132 Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++R++ E+NLRLVV IA+RY RG+ LDLI+EGNLGL++AVEKFD +G++FSTYATWW Sbjct: 133 AKRKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWW 192 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI +Q RTIR+P+H+V+ +N +R +R L +L EP+ EEIA+++ D V Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKV 252 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 ++++ + S++TP+G + + L D + D P + +++ + + L L + Sbjct: 253 REIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTER 312 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 +++VL RFGL A TLE+VG+ G+TRER+RQI+ + LR+LR +++ L Sbjct: 313 EQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLK 366 >UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/Verrucomicrobia group RepID=B3DXQ3_METI4 Length = 287 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 120/265 (45%), Positives = 184/265 (69%), Gaps = 1/265 (0%) Query: 57 ATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLAL 116 A +LYL EI PLLT E+EV A+R +GD +RR+MI++NLRLVVKIA Y N GL L Sbjct: 7 ALKLYLREISQIPLLTKEKEVELAKRIQQGDQEARRQMIQANLRLVVKIAHDYANSGLPL 66 Query: 117 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELN 176 DLI EGN+GL++AV++FDP +G + STYA WWI+Q+I+RA+ NQ++TIRLP+H+V ++ Sbjct: 67 PDLISEGNIGLMKAVDRFDPSKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKIA 126 Query: 177 VYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSE-KALL 235 R A +LS L +P+ EE+AE+L V+ + + R S+D +G + + AL Sbjct: 127 KMRRVAMQLSEILGRDPTDEELAEELGMSTTKVAELRTIAIRPASLDATVGEEEDGTALG 186 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 +++ DE P+ + D ++K +I++ L +L+ ++R++L+ RFGL G E TLE++G+E Sbjct: 187 ELVKDESAASPDQSVLDQNLKNTIMELLPKLDERERKILSLRFGLEGNEQMTLEEIGKEF 246 Query: 296 GLTRERVRQIQVEGLRRLREILQTQ 320 +TRER+RQ+Q LR++R+ L+ Q Sbjct: 247 HVTRERIRQLQNIALRKIRKELEKQ 271 >UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A8S2D4_9CLOT Length = 406 Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 120/259 (46%), Positives = 174/259 (67%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D + YL EIG LLT EEE ARR GDV + R+++E+NLRLVV IA+RY RG++ Sbjct: 135 DPIREYLKEIGSIALLTPEEESDLARRKSEGDVEAGRKLVEANLRLVVSIAKRYTGRGMS 194 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 LDL++EGNLGL++AVEKFD +G+R STYATWW++Q+I R++ +Q+RTIRLP+H+V+ + Sbjct: 195 FLDLVQEGNLGLMKAVEKFDYAKGYRLSTYATWWVKQSITRSLADQSRTIRLPVHMVEAV 254 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 N R R LS KL EPS EE+AE+++ V+ +++ + S++TP+G + L Sbjct: 255 NKIRRAQRSLSVKLGREPSMEEVAEEVNMSGKRVAELIQASGDTVSLETPVGDEEGSNLG 314 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D +AD+ ED + +++ I L LN ++REV+ RFGL TLE+VG+ Sbjct: 315 DFVADDANASTEDKAESFLLREEIDSMLQGLNPREREVIILRFGLETGHPLTLEEVGKRF 374 Query: 296 GLTRERVRQIQVEGLRRLR 314 +TRER+RQI+ LR+LR Sbjct: 375 NVTRERIRQIETAALRKLR 393 >UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317B8 Length = 367 Score = 231 bits (590), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 120/267 (44%), Positives = 180/267 (67%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D+ QL+L +IG LLTA+EEV A+R RGD+ ++++M+ESNLRLVV IA+ Y N+GL Sbjct: 97 DSLQLFLKDIGKVRLLTAQEEVDLAKRIERGDLDAKQKMVESNLRLVVSIAKNYRNQGLP 156 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 LDLI+EG LGL+RA EKFD +GF+FSTYATWWIRQ I RA+ ++ RTIR+P+H+V++L Sbjct: 157 FLDLIQEGTLGLVRAAEKFDYRKGFKFSTYATWWIRQAIARALADKARTIRIPVHVVEKL 216 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 N R R+L +L EP+AEEIA+ ++V + R + S++ P+G + E Sbjct: 217 NKIGRAERKLVTELGREPTAEEIADVTGIDPEEVDSIKRSAQAPVSLEKPVGDEEESEFG 276 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 +ADE+ P + + K+++ + L L+ ++R VL R+GL G TL++VGR Sbjct: 277 QFIADERAESPYERAAEILTKEALREALENLSYRERRVLELRYGLGGEHPRTLDEVGRTF 336 Query: 296 GLTRERVRQIQVEGLRRLREILQTQGL 322 +TRER+RQI+ + L++L+ + + Q L Sbjct: 337 NVTRERIRQIENQSLKKLQSLAEAQKL 363 >UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi RepID=D1C1P9_SPHTD Length = 538 Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 113/239 (47%), Positives = 168/239 (70%), Gaps = 1/239 (0%) Query: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143 +RGD+A R+++ E+NLRLVV +A++YG RG+++LDL++EGNLGLIRAVEKF +GF+FS Sbjct: 296 VRGDIA-RKKLTEANLRLVVSVAKKYGGRGMSMLDLVQEGNLGLIRAVEKFQHHKGFKFS 354 Query: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD 203 TYATWWIRQ I RAI +Q RTIR+P+H+V+++N +RT+R L +L EP++EEIA ++ Sbjct: 355 TYATWWIRQAITRAIADQARTIRIPVHMVEQINRLIRTSRRLQQELGREPTSEEIAAEMG 414 Query: 204 KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL 263 P D V +L++++ S++ P+G + + L D + D K P D +K+ + L Sbjct: 415 LPPDKVREILKISQEPVSLEMPIGEEEDSNLGDFIEDSKALAPSDAASLKLLKEQVDDVL 474 Query: 264 FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 L ++R VL RFGL TLE+VGRE G+TRER+RQI+ + LR+LR +++ L Sbjct: 475 GSLGDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKALRKLRHPSRSKKL 533 >UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=D1CF84_THET1 Length = 363 Score = 230 bits (587), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 134/297 (45%), Positives = 194/297 (65%), Gaps = 7/297 (2%) Query: 21 GVEVFDEKALVEQEPSDNDLAE--EELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVY 78 G+EV E+ + + DL + EEL + G + DA ++YL EIG PLLT +EEV Sbjct: 56 GIEVLPEETTEAEAGPEEDLDQTLEELENDGY---LTDAVKIYLREIGSVPLLTPKEEVE 112 Query: 79 FARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPER 138 A+R +GD + +R + +NLRLVV IA+RY RGL LLDLI+EGN+GL+RAV+KFD + Sbjct: 113 LAKRIEKGDTEALQRFVLANLRLVVSIAKRYVGRGLPLLDLIQEGNIGLMRAVQKFDWRK 172 Query: 139 GFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEI 198 G RFSTYATWWIRQ I RAI +++R IRLP HI +ELN R ++LS ++ EP+ EEI Sbjct: 173 GHRFSTYATWWIRQAITRAIGDKSREIRLPAHINEELNRINRIRQQLSQTVNREPTPEEI 232 Query: 199 AEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQS 258 AE+ + V +L ++ S+DTP+G +++ L + + D + N PE+ D+ +K Sbjct: 233 AEKAGTSPERVRELLGYLQQPVSLDTPVGEEADSTLGEFVPDVRAN-PEEEATDEVLKTE 291 Query: 259 IVKWLFE-LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + + L E L +++ VL R+GL +LE VGRE+G+TRERVRQ++ + L +LR Sbjct: 292 MDRVLDEVLTPREKRVLQLRYGLGDGHTYSLEKVGRELGVTRERVRQLEKQALEKLR 348 >UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomycetales RepID=Q2J784_FRASC Length = 422 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 130/328 (39%), Positives = 192/328 (58%), Gaps = 34/328 (10%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE 74 A + G+E+ DE +E SD+ A ++ A D ++YL EIG PLL A Sbjct: 90 ARLNAVGIELLDE-----EEASDDATAASRSTAEHAG--TADLVRMYLREIGKVPLLNAA 142 Query: 75 EEVYFARRA-------------------LRGDV--------ASRRRMIESNLRLVVKIAR 107 +EV ++R LR D+ A++++++ +NLRLVV +A+ Sbjct: 143 QEVELSKRVEAGLFAEYKLESVPDLPADLRRDLGLLVKDGHAAKQQLVSANLRLVVSVAK 202 Query: 108 RYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL 167 +Y RG+ LLDL++EGNLGLIRAVEKFD +G++FSTYATWWIRQ I RA+ +Q RTIR+ Sbjct: 203 KYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIGRALADQARTIRI 262 Query: 168 PIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLG 227 P+H+V+++N R R+L L EP+ EE+A +LD P++ V + R + S++T +G Sbjct: 263 PVHVVEQINKITRLQRQLVSTLGREPTDEELALELDMPIEQVVELRRYAQDTVSLETSVG 322 Query: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 D + L D + D P D M+ I L L+ ++REV+ RFGL + T Sbjct: 323 DDGDSVLGDFIEDSDATSPADAASYGAMQDEIENVLGGLSPREREVMRLRFGLADGKQHT 382 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLRE 315 L +VG +GLTRER+RQI+ + LR LR+ Sbjct: 383 LAEVGNRLGLTRERIRQIERDTLRELRK 410 >UniRef50_A6D4Y7 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1 RepID=A6D4Y7_9VIBR Length = 289 Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 123/284 (43%), Positives = 180/284 (63%), Gaps = 9/284 (3%) Query: 44 ELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVV 103 E L++ +R D Y+ ++ LL+ E+E ++A A RGD A+R +IESNLRLVV Sbjct: 6 ERLNKQYEERGTDFYSKYIHDVVGIDLLSPEQEYHYATLARRGDKAARDVLIESNLRLVV 65 Query: 104 KIARRYGNRGLA---LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 KIAR Y RGL+ +LDLIEEGNLGLI+A++KF+PE+GFRFSTYA WWIR++IE ++MN Sbjct: 66 KIARNYTKRGLSNHTILDLIEEGNLGLIKAIDKFEPEKGFRFSTYAVWWIRESIESSLMN 125 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLN---E 217 RT+RLP+H++KE+N + E+ L PS +EIAE+ K +S ++ ++ E Sbjct: 126 TGRTVRLPVHVIKEINRLSKQTNEIIADLQRPPSVKEIAEKTAKSQAQISDLIHMSGFIE 185 Query: 218 RITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARR 277 +SVDT D E L+ E P D ++ + QS+ + L K R+++ R Sbjct: 186 SSSSVDTI---DKEFQSLETCKSEAIPEPYDICHNEKLSQSLESVVLSLPEKYRDIVIHR 242 Query: 278 FGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 FGL G E TL+++G GL++ERVRQ+Q EG+ +L+ L+ G Sbjct: 243 FGLFGKEVLTLDNLGEMFGLSKERVRQLQQEGISKLQNKLKFDG 286 >UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomycetales RepID=Q0RDY7_FRAAA Length = 373 Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 121/287 (42%), Positives = 175/287 (60%), Gaps = 27/287 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRA-------------------LRGDV-------- 88 D ++YL EIG PLL A +EV ++R LR D+ Sbjct: 75 DLVRMYLREIGKVPLLNAAQEVELSKRVEAGLFAEHKLESDPDLPADLRRDLGLLVKDGH 134 Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 A++++++ +NLRLVV +A++Y RG+ LLDL++EGNLGLIRAVEKFD +G++FSTYATW Sbjct: 135 AAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATW 194 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RA+ +Q RTIR+P+H+V+++N R R+L L EP+ EE+A +LD P++ Sbjct: 195 WIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEELALELDMPIEQ 254 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V + R + S++T +G D + L D + D P D M+ I L LN Sbjct: 255 VVELRRYAQDTVSLETSVGDDGDSVLGDFIEDSDATSPADAASYGAMQDEIENVLGGLNP 314 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 ++REV+ RFGL + TL +VG +GLTRER+RQI+ + LR LR+ Sbjct: 315 REREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRK 361 >UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicrobia RepID=B1ZU80_OPITP Length = 353 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 113/260 (43%), Positives = 176/260 (67%), Gaps = 1/260 (0%) Query: 59 QLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 QLYL EIG + LLT +EE+ A+R +GD A+R MI++NLRLVVKIA Y + GL LLD Sbjct: 52 QLYLQEIGKTALLTIDEEISLAKRIRKGDKAARDHMIKANLRLVVKIAMDYKDFGLPLLD 111 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI EGN+GLI+AVE+FDP +G + STYA WWI+Q+I+RA+ NQ++TIRLP+H+V +++ Sbjct: 112 LISEGNIGLIKAVERFDPRKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKISKM 171 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL-DI 237 RTA L+ +L EP+ EE+A +L P V+ + ++ R S+D P+G + + A +I Sbjct: 172 RRTAMALTEELGREPTDEELAIELQIPTSKVAHLKSVSVRPASLDAPVGEEGDSATFGEI 231 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 + D+ P + ++ ++ + + L+ ++ E++ RFGL G + TLE+VGR + Sbjct: 232 VGDDNAVSPFEGLREKNLNSDLHAMVASLDEREAEIIRLRFGLDGKDELTLEEVGRRFHV 291 Query: 298 TRERVRQIQVEGLRRLREIL 317 TRER+RQ++ L ++R+ + Sbjct: 292 TRERIRQLEYLALSKMRKAM 311 >UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyanobacteria RepID=RPOD4_SYNE7 Length = 311 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 124/294 (42%), Positives = 175/294 (59%), Gaps = 23/294 (7%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRA---------------------LRGDVASRRRM 94 D YL IG PLLTAEEEV +R+ L+ ++ +M Sbjct: 19 DHVSWYLSSIGRIPLLTAEEEVELSRKVQLMMALLENPDAESNSENQAVLQAGQRAKTKM 78 Query: 95 IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 154 +++NLRLVV +A++Y N+GL LLDLI+EG+LGL RAVEKFDP G++FSTYA WWIRQ++ Sbjct: 79 LKANLRLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIRQSM 138 Query: 155 ERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR 214 RAI N RTIRLPIH+ ++++ + REL+H+L PS EIAE L P+ DV +L Sbjct: 139 TRAIDNHARTIRLPIHVSEKISRIKKMTRELTHQLKRLPSRAEIAEALKLPLQDVEMLLS 198 Query: 215 LNERITSVDTPLGGDSEKALL-DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 + TS+D GD ++ L D++ D K P D + I WL L ++++V Sbjct: 199 QSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQHEQISTWLAHLTEREQQV 258 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEAL 327 L RFGL E TL ++GR + ++RER+RQ++ L++LR +L Q L EA Sbjct: 259 LQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQKLR-VLSQQPLCPEAC 311 >UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. EuI1c RepID=D1VBD5_9ACTO Length = 424 Score = 223 bits (568), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 125/322 (38%), Positives = 186/322 (57%), Gaps = 31/322 (9%) Query: 21 GVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA 80 GVEV +E+ E+ + ++ G D ++YL EIG PLL A +EV + Sbjct: 95 GVEVVEEEDGAERSAAPSETGRVTAEHAGTA----DLVRMYLREIGRVPLLNAAQEVELS 150 Query: 81 RRA---------------------------LRGDVASRRRMIESNLRLVVKIARRYGNRG 113 +R +R A++++++ +NLRLVV +A++Y RG Sbjct: 151 KRVEAGLFAEHKLATAADLEPELHRDLKLLVRDGEAAKQQLVSANLRLVVSVAKKYSGRG 210 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 + LLDL++EGNLGLIRAVEKFD +G++FSTYATWWIRQ I RA+ +Q RTIR+P+H+V+ Sbjct: 211 MTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIGRALADQARTIRIPVHVVE 270 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 ++N R R+L L EP+ EE+A +LD P++ V + R + S++T +G D + Sbjct: 271 QINKITRLQRQLVSTLGREPTDEELALELDMPLEQVVELRRYAQDTVSLETTVGDDGDSV 330 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 L D + D P D M+ I L L+ ++REV+ RFGL + TL +VG Sbjct: 331 LGDFIEDSDATSPADAASYGAMQDEIDHVLGNLSPREREVMRLRFGLADGKQHTLAEVGN 390 Query: 294 EIGLTRERVRQIQVEGLRRLRE 315 +GLTRER+RQI+ + LR LR+ Sbjct: 391 RLGLTRERIRQIERDTLRELRK 412 >UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=Q0EWY1_9PROT Length = 660 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 167/234 (71%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++R MIE+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AVEKF+ RG++FSTYATWW Sbjct: 411 AKREMIEANLRLVISIAKKYTNRGLGFLDLIQEGNIGLMKAVEKFEWRRGYKFSTYATWW 470 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I R+I +Q RTIR+P+H+++ +N +R +R+++ ++ EP+ EE+AE L+ PV+ V Sbjct: 471 IRQAITRSIADQARTIRIPVHMIETINKMMRVSRQIAQEIGREPTPEELAEHLELPVEKV 530 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 ++L + + S++TP+G D + L D + D+ P D+T + ++ ++ L L + Sbjct: 531 LQILEVAKEPVSLETPIGDDEDSQLGDFVEDDNAENPLDSTIGAALAEATLEVLENLTDR 590 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 +++VL RFG+ TLE+VG++ G+TRER+RQI+ + LR+LR ++Q L Sbjct: 591 EQKVLRMRFGIGMNTDHTLEEVGKQFGVTRERIRQIEAKALRKLRHPSRSQKLK 644 >UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B9L102_THERP Length = 509 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 112/234 (47%), Positives = 158/234 (67%) Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 A+RR++ E+NLRLVV IA+RY RGL LLDLI+EGNLGL+RAV+KF +GF+FSTYATW Sbjct: 271 AARRKLTEANLRLVVSIAKRYTGRGLTLLDLIQEGNLGLMRAVDKFQTHKGFKFSTYATW 330 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RA+ + RTIRLP+H+V+ LN R AR+L+ +L EP+ E+A ++ P+D Sbjct: 331 WIRQAITRALADHARTIRLPVHLVETLNRVSRVARQLTQELGREPTTSELAAAVNMPLDR 390 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 + +L+ + S++ P+G + E L D L DE+ P D +++ + L L Sbjct: 391 LRELLQAAQDPVSLEAPVGQEEESTLGDFLEDERAVAPLDAAALSLLREQVQSLLATLTE 450 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++R VLA RFGL + TLE+VGR G+TRERVRQI+ + LR+LR + + L Sbjct: 451 RERRVLAMRFGLEDGQTYTLEEVGRAFGVTRERVRQIEAKALRKLRHPQRARAL 504 >UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi (class) RepID=A7NGG2_ROSCS Length = 405 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 120/295 (40%), Positives = 180/295 (61%), Gaps = 26/295 (8%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA------------------------ 89 V D ++YL EIG LLTA+EE+ A++ RG+ A Sbjct: 106 VDDPVRVYLREIGRVNLLTAQEEIMLAQQVERGEQANERLQNGDYTPVERLQLHRWVQEG 165 Query: 90 --SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 +R R+I++NLRLVV IA++Y RG++LLDLI+EGN+GL+RA EKFD +G++FSTYAT Sbjct: 166 QAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKFDYRKGYKFSTYAT 225 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I R I +Q+RTIRLP+H+ + +N +RT+ + +P+ +EIA +L PV+ Sbjct: 226 WWIRQAITRVIADQSRTIRLPVHVGETINRVMRTSNRIQQTTGRDPTPDEIALELGIPVE 285 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V R+L + S++TP+G + + L D + D K P ++ +++ I L +L Sbjct: 286 KVRRVLEAARQTISLETPIGPEGDSVLADFIEDGKGATPMESASSHILREQIDSALEKLP 345 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++R ++ R+GL TLE+VGRE G+TRER+RQI+ LR+LR +GL Sbjct: 346 ERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRHPHYGRGL 400 >UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A975_9BACT Length = 631 Score = 220 bits (561), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 96/225 (42%), Positives = 163/225 (72%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ M+E+NLRLV+ IA++Y NRGL+ LDLI+EGN+GL++AVEKF+ RG++FSTYATWW Sbjct: 332 AKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWW 391 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I R+I +Q RTIR+P+H+++ LN ++ ++L + HEP+ EE+A++++ PV+ V Sbjct: 392 IRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEFGHEPTPEEVADEMNLPVERV 451 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 +++++ ++ S+ +P+G + + D + D+ P D T +++ I+ L L + Sbjct: 452 QQIMKMAQQPISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAYSLLREKIIDVLDSLTER 511 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +R+VL+ RFGL+ + TLE+VG++ +TRER+RQI+ + LR++R Sbjct: 512 ERKVLSLRFGLVDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMR 556 >UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacteria RepID=RPOD_LACLA Length = 386 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 115/288 (39%), Positives = 183/288 (63%), Gaps = 6/288 (2%) Query: 38 NDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVAS---RRRM 94 +D A +E+++ R+ D ++YL EIG PL++ +EE A + G + ++ + Sbjct: 98 SDTAMDEIVT---NVRIDDPVRMYLKEIGRYPLISLDEETKLAEAIIAGGEGAEFAKQML 154 Query: 95 IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 154 E+NLRLVV IA+RY RG+ LDLI+EGN+GL++AV+KFD +GF+FSTYATWWIRQ I Sbjct: 155 AEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATWWIRQAI 214 Query: 155 ERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR 214 RAI +Q RTIR+P+H+V+ +N +R R L +L +PS EEI ++L D V +L+ Sbjct: 215 TRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDKVREVLK 274 Query: 215 LNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVL 274 + + S++TP+G + + L D + D+ P D T +++ + + + L ++ VL Sbjct: 275 IAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTDREENVL 334 Query: 275 ARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 RFGL TLEDVG++ +TRER+RQI+ + +++LR +++ L Sbjct: 335 RMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLRHPRRSKPL 382 >UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Streptomyces RepID=UPI0001AF1456 Length = 430 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 120/282 (42%), Positives = 173/282 (61%), Gaps = 27/282 (9%) Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVA---------------------------SRRR 93 YL EIG PLLTA EEV ARR G A ++RR Sbjct: 137 YLREIGRIPLLTAAEEVELARRVEAGLFAEEKLRLTPDLDSRLAHDLDRLVVMGRMAKRR 196 Query: 94 MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 153 +IE+NLRLVV +A+RY RGL +LDL++EGNLGLIRAVEKFD RG++FSTYATWWIRQ Sbjct: 197 LIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQA 256 Query: 154 IERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRML 213 + RA+ +Q RTIR+P+H+V+ +N +R R + + EP+ EE+A LD P + V +L Sbjct: 257 MSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGREPTPEEVAAHLDLPPERVGEVL 316 Query: 214 RLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 RL + S+ P+G + + AL D++ D P ++ +++ + L L ++R+V Sbjct: 317 RLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGERERKV 376 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 + R+GL+ TLE++GR G+TRER+RQI+ + L +LR+ Sbjct: 377 VQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRD 418 >UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacteria (class) RepID=B9CNX8_9ACTN Length = 455 Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 119/290 (41%), Positives = 171/290 (58%), Gaps = 31/290 (10%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRR----------------------- 92 D ++YL EIG LLTA EEV A + G A+++ Sbjct: 152 DPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEATQKLEDFEDEKIELSRAEQRRLMRIE 211 Query: 93 --------RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFST 144 ++I +NLRLVV IA+RY RG+ LDLI+EGNLGLIRAVEKFD +GF+FST Sbjct: 212 QVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFST 271 Query: 145 YATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDK 204 YATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R R+L L +P+ EEI ++ Sbjct: 272 YATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPTPEEIGAEMGM 331 Query: 205 PVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLF 264 D V + ++++ S++TP+G + + L D + D P D D +++ + + L Sbjct: 332 SPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAIAPPDAASDSMLREQLEQVLD 391 Query: 265 ELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 L ++R+V+ RFGL TLE+VGRE G+TRER+RQI+ + L +LR Sbjct: 392 GLADRERKVIKFRFGLEDGRPRTLEEVGREFGVTRERIRQIESKTLAKLR 441 >UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM33_ACIFE Length = 589 Score = 217 bits (552), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 112/244 (45%), Positives = 167/244 (68%), Gaps = 2/244 (0%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 R GD A ++ + E+NLRLVV IA+RY RG+ LDLI+EGNLGLI+AVEKFD +GF Sbjct: 343 RMEFCGDNA-KKCLSEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGF 401 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R +R+L +L EP+ EEIA+ Sbjct: 402 KFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPEEIAK 461 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 ++D V+ V + ++ + S++TP+G + + L D + D++ P D +++ + Sbjct: 462 EMDVSVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQEAPSPADAASYTLLQEQLG 521 Query: 261 KWLFE-LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 K L E L+A++R VL RFGL+ TLE+VG+ G+TRER+RQI+ + LR+LR ++ Sbjct: 522 KVLQEHLSARERRVLELRFGLMDGRTRTLEEVGQYFGVTRERIRQIEAKALRKLRSPKRS 581 Query: 320 QGLN 323 + L Sbjct: 582 KPLK 585 >UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK63_9BACT Length = 626 Score = 216 bits (551), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 97/225 (43%), Positives = 158/225 (70%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ ++IE+NLRLVV IA++Y NRGL LDLI+EGN+GL++AVEKF+ +RG++FSTYATWW Sbjct: 389 AKSKLIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFEYKRGYKFSTYATWW 448 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI +Q RTIR+P+H+++ +N ++ R+L + EP+ EEI+ ++D PV+ + Sbjct: 449 IRQAITRAIADQARTIRIPVHMIETINKMMKITRQLQQDMGREPTPEEISSKMDIPVEKI 508 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 +++++ + S++TP+G D + +L D + D+ P + +K+ + L L+ + Sbjct: 509 KKVMKIAKEPVSLETPIGEDEDSSLGDFIEDKSAKNPSEEVTYLKLKEHTKQILETLSHR 568 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + VL RFG+ TLE+VG++ +TRER+RQI+ + LR+LR Sbjct: 569 EASVLKLRFGIECDSDHTLEEVGKQFNVTRERIRQIEAKALRKLR 613 >UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacteria RepID=RPOD_RICBR Length = 641 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 101/244 (41%), Positives = 169/244 (69%), Gaps = 1/244 (0%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 +++ R + +++ MIE+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ RG+ Sbjct: 379 QKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 438 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N +RT+R++ ++L +EP+ EIA Sbjct: 439 KFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKIIRTSRQMLNELGYEPTPAEIAA 498 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLG-GDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 +L P+D V +++++ + S++ P+G GD L D + D+ P D ++++ Sbjct: 499 RLSMPIDKVRKVMKIAKEPISLENPVGDGDDNSYLGDFIEDKNAVAPIDAAIQSNLREVT 558 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 + L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ +++ Sbjct: 559 TRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIRS 618 Query: 320 QGLN 323 + LN Sbjct: 619 KKLN 622 >UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteria RepID=C1F1D9_ACIC5 Length = 597 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 106/245 (43%), Positives = 168/245 (68%), Gaps = 3/245 (1%) Query: 81 RRALRGDV---ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137 R ++GD+ ++R +IE+NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+KF+ Sbjct: 343 REIIQGDMDAEQAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 402 Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197 RG++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N +RT+R+L +L EP++EE Sbjct: 403 RGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQELGREPTSEE 462 Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257 IA ++D PV V ++L++ + S++TP+G + + L D + D + P + ++K+ Sbjct: 463 IARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDSQAVSPSEAVISVNLKE 522 Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 + L L ++ V+ RFGL TLE+VG+ +TRER+RQI+ + LR+LR Sbjct: 523 YTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLRHPS 582 Query: 318 QTQGL 322 +++ L Sbjct: 583 RSRKL 587 >UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphaproteobacteria RepID=RPOD_RHOCA Length = 674 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 96/225 (42%), Positives = 162/225 (72%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ RG++FSTYATWW Sbjct: 436 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 495 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I R+I +Q RTIR+P+H+++ +N +RT R++ H++ EP+ EE+AE+L P++ V Sbjct: 496 IRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKV 555 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 +++++ + S++TP+G + + L D + D+ P D+ +++K++ + L L + Sbjct: 556 RKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLASLTPR 615 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ Sbjct: 616 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 660 >UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=D0LP36_HALO1 Length = 697 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 102/234 (43%), Positives = 163/234 (69%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ ++E+NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+KF+ +RG++FSTYATWW Sbjct: 459 AKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWW 518 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI +Q RTIR+P+H+++ +N +RT+R L +L EP+ EEIAE+++ P+D V Sbjct: 519 IRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLVQELGREPTPEEIAERMELPLDKV 578 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 ++L++ + S++TP+G + + L D + D+ P D ++ + K L L + Sbjct: 579 RKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVTSPSDAVISVNLAEQTRKVLATLTPR 638 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 + +VL RFG+ TLE+VG++ +TRER+RQI+ + LR+LR +++ L Sbjct: 639 EEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLK 692 >UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteobacteria RepID=A8ZUC3_DESOH Length = 738 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 105/235 (44%), Positives = 162/235 (68%) Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 AS+ +I +NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+KF+ RG++FSTYATW Sbjct: 499 ASKSELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATW 558 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RAI +Q RTIR+P+H+++ +N +RT+R L + +EPS EEIAE+++ P++ Sbjct: 559 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQERGYEPSPEEIAEKMEIPLEK 618 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V R+L++ S++TP+G + + L D + D+K P + ++ + K L L Sbjct: 619 VRRVLKIAREPISLETPIGEEEDSHLGDFIEDKKFMIPSEAAVSMNLSEQTRKVLATLTP 678 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 ++ +VL RFG+ TLE+VGR+ +TRER+RQI+ + LR+LR +++ L Sbjct: 679 REEKVLRMRFGIGEKADHTLEEVGRDFAVTRERIRQIEAKALRKLRHPTRSKMLK 733 >UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JCN6_9BACT Length = 377 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 111/266 (41%), Positives = 176/266 (66%), Gaps = 1/266 (0%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 ++ + YL EIG LLT +EV ARR G+ +R MI+SNLRLVVKIA Y + GL Sbjct: 79 NSIRTYLQEIGRIDLLTPAQEVTLARRIQAGEKEARDLMIKSNLRLVVKIAHDYKDFGLP 138 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 +LDLI EGN+GL++AVE+FDP++G + STYA WWI+Q+I+RA+ NQ++TIRLP+H+V ++ Sbjct: 139 VLDLISEGNIGLVKAVERFDPDKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKI 198 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA-L 234 + + A L+ +L EP+ +E+AE L+ PV+ VS + ++ R TS++ P+G D Sbjct: 199 SRMRKMALMLTEELGREPTDQELAEMLEMPVNKVSHLKSVSVRPTSLNAPVGEDGNSTEF 258 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 +I+ D+ P + + ++ + + + L ++ E++ RFGL G TLE+VG+ Sbjct: 259 GEIVGDDNAPTPYENLHEKSLRGDLHEMIDGLEDREAEIIRLRFGLNGDSPLTLEEVGQV 318 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQ 320 +TRERVRQ+Q L ++R+I+ ++ Sbjct: 319 FDITRERVRQLQNIALSKMRKIMASK 344 >UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicrobia RepID=B2UM02_AKKM8 Length = 688 Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 108/257 (42%), Positives = 170/257 (66%), Gaps = 3/257 (1%) Query: 61 YLGEIGYSPLLTAEE--EVYFA-RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALL 117 +L E+ +TA+E + Y R+ LR ++ M+E+NLRLV+ IA++Y NRGL+ L Sbjct: 415 HLAELELRMWMTADEMGDAYQELRKWLREARRAKDEMVEANLRLVISIAKKYTNRGLSFL 474 Query: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177 DLI+EGN+GL++AVEKF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N Sbjct: 475 DLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 534 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 +R ++L + EP+ EEIAE++ PV+ V +L++ ++ S+ P+G + + D Sbjct: 535 LMRVQKQLVQEYGREPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTSFGDF 594 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 + D+ P + +K+ I L L ++REV+ +RFGL TLE+VGR+ + Sbjct: 595 IEDKAAENPMEEASFSFLKEKIKDVLDTLTDREREVIEQRFGLRDGSPRTLEEVGRQFSV 654 Query: 298 TRERVRQIQVEGLRRLR 314 TRER+RQI+ + LR+LR Sbjct: 655 TRERIRQIEAKALRKLR 671 >UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=Q47RL2_THEFY Length = 388 Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 128/293 (43%), Positives = 177/293 (60%), Gaps = 34/293 (11%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFAR------------RALR-GDVAS------------ 90 D YL EIG PLLTAEEEV A+ RA R G V + Sbjct: 85 DIVHAYLREIGRVPLLTAEEEVELAKAIEIGLYAEQKLRAARTGPVPAQYSPEWFEDLNE 144 Query: 91 --------RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 142 +RR+IESNLRLVV +A+RY RGLALLDLI+EGNLGLIRAVEKFD RG++F Sbjct: 145 LVREGKLAKRRLIESNLRLVVSVAKRYLGRGLALLDLIQEGNLGLIRAVEKFDYTRGYKF 204 Query: 143 STYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL 202 STYATWWIRQ I RAI +Q RTIR+P+H+V+ +N RT R L +L EP+ E++ +L Sbjct: 205 STYATWWIRQAITRAIADQARTIRVPVHMVESINRLARTRRRLHQELGREPTLHELSREL 264 Query: 203 DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKW 262 + D V + R+++ S+ TP+ G+ + A D + D P + ++ + + Sbjct: 265 NVDHDRVVEIHRVSQEPISLHTPI-GEEDSAFGDFIEDTDAVPPVEAAAFVMLQDQLAQV 323 Query: 263 LFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 L L+ +++ V+ RFGL + TLE+VGR+ G+TRER+RQI+ + L +LR+ Sbjct: 324 LGGLSEREQRVITLRFGLEDGKPHTLEEVGRKFGVTRERIRQIESKTLAKLRQ 376 >UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacteria RepID=RPOD_MYXXA Length = 708 Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 164/234 (70%), Gaps = 4/234 (1%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 RRA R ++ ++E+NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+KF+ +RG+ Sbjct: 465 RRAER----AKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGY 520 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N +RT+R L ++ EP+ EEIAE Sbjct: 521 KFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAE 580 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 +++ P+D V ++L++ + S++TP+G + + L D + D+ P D + ++ + Sbjct: 581 KMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSLVSPADAVINMNLAEQTR 640 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 K L L ++ +VL RFG+ TLE+VG++ +TRER+RQI+ + LR+LR Sbjct: 641 KVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLR 694 >UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRI0_HIRBI Length = 683 Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 97/233 (41%), Positives = 164/233 (70%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ RG++FSTYATWW Sbjct: 445 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 504 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I R+I +Q RTIR+P+H+++ +N +RT R++ H++ EP+ EE+AE+L P++ + Sbjct: 505 IRQAITRSIADQARTIRIPVHMIETINKIVRTQRQMLHEIGREPTPEELAEKLGLPLEKI 564 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 ++L++ + S++TP+G D + L D + D+ P D +++++ + L L + Sbjct: 565 RKVLKIAKEPISLETPIGDDEDSNLGDFIEDKMALLPVDAAIQSNLRETTTRVLASLTPR 624 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 + VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ +++ L Sbjct: 625 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKL 677 >UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi (class) RepID=A5UQ16_ROSS1 Length = 541 Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 106/225 (47%), Positives = 155/225 (68%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +R + ++NLRLVV +A++Y RGL LLDLI+EGN+GLIRAVEKFD +GF+FSTYATWW Sbjct: 304 AREDLTQANLRLVVSVAKKYIGRGLQLLDLIQEGNVGLIRAVEKFDYRKGFKFSTYATWW 363 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI +Q RTIR+P+H+V+ +N +R +R + +L EP+ EE++ L PVD V Sbjct: 364 IRQAITRAIADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEELSRALGIPVDKV 423 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + + + S++TP+G + + L D + D K P D +++ + + L +L + Sbjct: 424 RSIRKTSLEPVSLETPVGQEEDSQLGDFIEDSKVLAPSDAASHQMLREQVEQVLNQLTER 483 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +R VL RFGL + TLE+VG+E G+TRER+RQI+V+ LR+LR Sbjct: 484 ERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLR 528 >UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacteria RepID=RPOD_CAUCR Length = 652 Score = 213 bits (543), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 96/225 (42%), Positives = 161/225 (71%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ RG++FSTYATWW Sbjct: 414 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 473 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I R+I +Q RTIR+P+H+++ +N +RT+R++ H++ EP+ EE+AE+L P++ V Sbjct: 474 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 533 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 ++L++ + S++TP+G + + L D + D+ P D +++++ + L L + Sbjct: 534 RKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPR 593 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ Sbjct: 594 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 638 >UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila RepID=Q6AQ51_DESPS Length = 534 Score = 213 bits (543), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 117/292 (40%), Positives = 178/292 (60%), Gaps = 13/292 (4%) Query: 28 KALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS-----PLLTAEEEVYFARR 82 K VE + DL EEE+ S +R++D ++ E G S LL EE F + Sbjct: 237 KIFVELIAGEGDLPEEEMRSPEELERLVDLQ--FIRESGSSLQSLNELLKEVEEGRFISK 294 Query: 83 ALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 142 ++ ++ +NLRLV+ +++R+ NRGL DLI+EGN+GL++AVEKFD RGF+F Sbjct: 295 E------AKEALVRANLRLVISVSKRFVNRGLQFSDLIQEGNIGLMKAVEKFDYRRGFKF 348 Query: 143 STYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL 202 STYATWWIRQ+I R I +Q RTIRLP+H+++ +N LR +++ + EPS EE+A QL Sbjct: 349 STYATWWIRQSITRGIADQGRTIRLPVHMIETINRMLRVSKDFYLEEHREPSVEEVAGQL 408 Query: 203 DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKW 262 VD V L++ + S+DTP+G D E L D + D+ GP+ +K+ + + Sbjct: 409 GTEVDKVKSALKIAKDAISLDTPVGDDGETYLGDFIVDKNCLGPDGFAMVASLKECLSQV 468 Query: 263 LFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 L L+ ++ +VL R+G+L TLE+VGR +TRER+RQI+ + + +L+ Sbjct: 469 LSSLSPREEKVLKMRYGILEKREYTLEEVGRCFNVTRERIRQIEAQAISKLK 520 >UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Proteobacteria RepID=RPOD_AGRT5 Length = 684 Score = 213 bits (542), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 96/225 (42%), Positives = 161/225 (71%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ RG++FSTYATWW Sbjct: 446 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 505 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I R+I +Q RTIR+P+H+++ +N +RT+R++ H++ EP+ EE+AE+L P++ V Sbjct: 506 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 565 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 ++L++ + S++TP+G + + L D + D+ P D +++++ + L L + Sbjct: 566 RKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPR 625 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ Sbjct: 626 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670 >UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteobacteria RepID=A9W0B8_METEP Length = 718 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 98/233 (42%), Positives = 165/233 (70%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ MIE+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ RG++FSTYATWW Sbjct: 480 AKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 539 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I R+I +Q RTIR+P+H+++ +N +RT+R++ H++ EP+ EE+AE+L P++ V Sbjct: 540 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 599 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 ++L++ + S++TP+G + + L D + D+ P D +++++ + L L + Sbjct: 600 RKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNVVLPIDAAIQSNLRETTTRVLASLTPR 659 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 + VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ +++ L Sbjct: 660 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKL 712 >UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 Tax=Actinomycetales RepID=HRDA_STRCO Length = 396 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 118/282 (41%), Positives = 171/282 (60%), Gaps = 27/282 (9%) Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVA---------------------------SRRR 93 YL EIG PLL+A EEV ARR G A ++RR Sbjct: 103 YLREIGRIPLLSAAEEVDLARRVEAGLFAEEKLRCSPGLDDRLALDLDRLVVLGRLAKRR 162 Query: 94 MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 153 +IE+NLRLVV +A+RY RGL +LDL++EGNLGLIRAVEKFD RG++FSTYATWWIRQ Sbjct: 163 LIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQA 222 Query: 154 IERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRML 213 + RA+ +Q RTIR+P+H+V+ +N +R R + + EP+ +E+A LD + V +L Sbjct: 223 MSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVAAHLDLAPERVGEVL 282 Query: 214 RLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 RL + S+ P+G + + AL D++ D P ++ ++Q + L L ++R+V Sbjct: 283 RLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERKV 342 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 + R+GL TLE++GR G+TRER+RQI+ + L +LR+ Sbjct: 343 VQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRD 384 >UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB24_THET1 Length = 463 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 103/227 (45%), Positives = 156/227 (68%) Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 ++ ++IE+N RLVV IA++Y RGL+LLDLI+EGN+GL+RA +KFD RG++FSTYATW Sbjct: 224 GAKCKLIEANTRLVVSIAKKYLGRGLSLLDLIQEGNIGLMRAADKFDYTRGYKFSTYATW 283 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ + RAI +Q+RTIRLP+H+ + ++ +T+++L +L HEP+ E+++ +L P+ Sbjct: 284 WIRQAVTRAIADQSRTIRLPVHVCETVSKIHKTSQKLQQELGHEPTIEQLSSELGMPMKK 343 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V ++ + ++ S++ P+G D + L D L D P +D +++ I L L Sbjct: 344 VVQIQQASKFPVSLEAPIGEDGDSMLGDFLEDVHVLNPVQKAANDILREQINSVLQNLPP 403 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 K+R+VL RFGL+ + TLE+VG E +TRERVRQI+ LRRLRE Sbjct: 404 KERKVLELRFGLVDGKCRTLEEVGNEFAITRERVRQIECTALRRLRE 450 >UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AV06_RUBXD Length = 304 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 116/255 (45%), Positives = 168/255 (65%), Gaps = 1/255 (0%) Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 YL IG LLT + E+ +RRA +GD +R+++IE NLRLVV +A++Y GL DLI Sbjct: 38 YLDRIGRWRLLTRDGEIELSRRAKKGDRKARQKLIEKNLRLVVSVAKKYRGYGLPFEDLI 97 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 +EGN+GL++AVEKFDPERGFRFSTYATWWIRQ ++RA+ ++ RTIR+P+H+ +++ R Sbjct: 98 QEGNIGLMKAVEKFDPERGFRFSTYATWWIRQAVQRAVADKGRTIRVPVHMTEKIRKVSR 157 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG-DSEKALLDILA 239 T ELS +L+ EP+ EEIA +L+ V+DV + TS+D P+ +S L D + Sbjct: 158 TFNELSLELEREPTDEEIARRLEWDVEDVRLTISAMPDATSLDQPVSSEESASELGDFIE 217 Query: 240 DEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTR 299 DE+ + DT + + + + L + R VL RR+GL E ATL ++G E+ ++R Sbjct: 218 DERTSDTPDTVLKELESSQLKEAIERLPERARYVLVRRYGLDDREPATLAELGDELKISR 277 Query: 300 ERVRQIQVEGLRRLR 314 ERVRQ+Q E R L+ Sbjct: 278 ERVRQLQREAERLLK 292 >UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria RepID=B2V7P9_SULSY Length = 590 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 103/221 (46%), Positives = 153/221 (69%) Query: 94 MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 153 ++++NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+K+D ++GF+FSTYATWWIRQ Sbjct: 355 LVKANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKYDYKKGFKFSTYATWWIRQA 414 Query: 154 IERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRML 213 I RAI +Q RTIR+P+H+++ +N LR +R L +L EP+ EEIA++ P D V ++L Sbjct: 415 ITRAIADQARTIRIPVHMIETINKLLRISRTLVQELGREPTPEEIAKKAGMPADKVRKIL 474 Query: 214 RLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 R ++ S++TP+G D E L D + D+ PE ++ + + L L+ ++ +V Sbjct: 475 RTSQDPVSLETPIGSDEESHLGDFIEDKTVLSPEQHMLKQALRLQLDEVLSTLSEREEQV 534 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 L RFGL TLE VG+ G+TRER+RQI+ + LR+LR Sbjct: 535 LRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLR 575 >UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=A6G972_9DELT Length = 547 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 100/227 (44%), Positives = 158/227 (69%) Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 A++ ++E+NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+KF+ +RG++FSTYATW Sbjct: 308 AAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATW 367 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RAI +Q RTIR+P+H+++ +N +RT R+L + EP+ +EIAE+++ PV+ Sbjct: 368 WIRQAITRAISDQARTIRVPVHMIESINKLIRTTRQLVQEFGREPTHQEIAEKMNMPVEK 427 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V +LR+ + S++TPLG D + +L D++ D+ P + + + L L Sbjct: 428 VRSILRIAKEPISLETPLGEDGDSSLGDLIEDKNALDPGSGVVERHLGDETRRALASLTP 487 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 ++ ++L RFG+ TLE+VGR+ +TRER+RQI+ + L +LR+ Sbjct: 488 REEKILRLRFGIGEASDHTLEEVGRDFSVTRERIRQIEAKALSKLRK 534 >UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria RepID=Q1J156_DEIGD Length = 532 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 121/289 (41%), Positives = 171/289 (59%), Gaps = 30/289 (10%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGD---------------------------- 87 D + YL EIG PLLT EEE+ ARR G+ Sbjct: 230 DPVRQYLHEIGRVPLLTLEEEIALARRIEEGEEARKMLEEAGDELDDRARRRLMRQMEDG 289 Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 A+R+ +IE+NLRLVV IA++Y RGL LDLI+EGN GLIRAVEKF+ R ++FSTYAT Sbjct: 290 AAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIRAVEKFEYRRRYKFSTYAT 349 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I RAI +Q RTIR+P+H+V+ +N RTAR+L +L EP+ EEIAE + D Sbjct: 350 WWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREPTYEEIAEAMGPGWD 409 Query: 208 --DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE 265 V + ++++ S++TP+G + + D + DE + P D + + + K L + Sbjct: 410 AAKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPVDNAAKTLLSEELEKALSK 469 Query: 266 LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 L ++ VL R GL+ TLE+VG+ +TRER+RQI+ + LR+L+ Sbjct: 470 LTEREALVLKFRKGLVDGREHTLEEVGQRFNVTRERIRQIENKALRKLK 518 >UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellular organisms RepID=RPOD_XYLFT Length = 618 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 97/233 (41%), Positives = 162/233 (69%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV KF+ RGF+FSTYATWW Sbjct: 379 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVCKFEHRRGFKFSTYATWW 438 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I R+I +Q RTIR+P+H+++ +N R +R++ + E + EE+A+++D P D + Sbjct: 439 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDKI 498 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 +++++ + S++TP+G D + L D + D P DTT + ++ +++ + L L + Sbjct: 499 RKVMKIAKEPISMETPIGDDEDSHLGDFIEDPNVESPVDTTTNVNLSETVREVLAGLTPR 558 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 + +VL RFG+ TLE+VG++ +TRER+RQI+ + LR+LR +++ L Sbjct: 559 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQL 611 >UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacteria RepID=RPOD_STRAU Length = 317 Score = 211 bits (536), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 120/282 (42%), Positives = 171/282 (60%), Gaps = 27/282 (9%) Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVA---------------------------SRRR 93 YL EIG PLLTA EEV ARR G A ++RR Sbjct: 24 YLREIGRIPLLTAAEEVDLARRVEAGLFAEEKLGGAADLDSQLAVDLDRLVVMGRMAKRR 83 Query: 94 MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 153 +IESNLRLVV +A+RY RGL +LDL++EGNLGLIRAVEKFD RG++FSTYATWWIRQ Sbjct: 84 LIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQA 143 Query: 154 IERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRML 213 + RA+ +Q RTIR+P+H+V+ +N +R R + + +EP+AEE+A L+ + V +L Sbjct: 144 MSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERVLEVL 203 Query: 214 RLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 RL + S+ P+G + + AL D++ D P ++ + + L L ++R+V Sbjct: 204 RLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLRCEHLEAVLSTLGERERKV 263 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 + R+GL TLE++GR G+TRER+RQI+ + L +LR+ Sbjct: 264 VQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRD 305 >UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria RepID=B8GCU9_CHLAD Length = 398 Score = 210 bits (535), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 116/285 (40%), Positives = 171/285 (60%), Gaps = 26/285 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA-------------------------- 89 D+ +LYL EIG PLLTAE+E A+ RG A Sbjct: 99 DSVRLYLREIGQVPLLTAEQEKQLAQMIERGQAAERKLATLPPDSPEAAKLRRIKEQGDE 158 Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +R++M +NLRLVV IA+RY +RGL LLDLI+EG+LGL+RA+EKFD +G++FSTYATWW Sbjct: 159 ARQKMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDHTKGYKFSTYATWW 218 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 I+Q + RA+ +Q+R +RLP+H+ + LN R+L+ L EP+ E+A L + + Sbjct: 219 IKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKL 278 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + R + S+ TP+G +++ L D + D +D ++Q I L +L+ + Sbjct: 279 RELRRTAQDPVSLATPVGEEADSTLADFIPDPHALDADDAAASGMLRQQIAAALDQLSER 338 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +R VL R+GL + TLE+VG+ G+TRERVRQI+V+ LR+LR Sbjct: 339 ERRVLELRYGLADGQPRTLEEVGKAFGVTRERVRQIEVKALRKLR 383 >UniRef50_Q21UR2 RNA polymerase sigma factor n=5 Tax=Burkholderiales RepID=Q21UR2_RHOFD Length = 350 Score = 210 bits (535), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 123/280 (43%), Positives = 172/280 (61%), Gaps = 7/280 (2%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 DA +YL ++ + L T +EE A RA GD A+R+ MIE NLRLVV IA+ Y RG+ Sbjct: 71 DALTVYLRQVRRTTLFTPQEEFELAGRARAGDFAARQSMIEHNLRLVVSIAKAYMGRGVP 130 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 LLDLIEEGNLGL+ A++KF+PERGFRFSTYATWWIRQ+++RA+M Q R +RLP+++V+EL Sbjct: 131 LLDLIEEGNLGLMHAIDKFEPERGFRFSTYATWWIRQSVDRALMCQGRVVRLPVNVVREL 190 Query: 176 NVYLRTARELSHKLDHEPS------AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD 229 LR R L S E++A L + V+ +L L E S+D L Sbjct: 191 QQVLRARRALESDAAFVVSRPDGIRVEDVAALLGRDPVHVADLLGLAEAPRSLDAALDRS 250 Query: 230 SE-KALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATL 288 E + D L DE P TQ ++++ + +W+ L+ +++EVL RFGL E TL Sbjct: 251 GETQTFGDSLVDEITADPSGVTQVHEVERLLEEWVGTLSEREKEVLEGRFGLHDREPETL 310 Query: 289 EDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALF 328 + + + LTRERVRQ+Q E L +L+ L +G+ +AL Sbjct: 311 DVLSARLDLTRERVRQVQNEALAKLKRYLAHRGITRDALI 350 >UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0M9H5_9FIRM Length = 347 Score = 210 bits (535), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 109/268 (40%), Positives = 174/268 (64%), Gaps = 1/268 (0%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG-NRGL 114 D+ + YL IG PLL+ ++E A+ G +++ +MI SNLRLVV +A+RY G+ Sbjct: 74 DSVKAYLHRIGRIPLLSKDQEERLAKEIEAGSQSAKDKMINSNLRLVVSVAKRYAAGSGM 133 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 ALLDLI+EGN+GL++AV+KFD RG++FSTYA WWIRQ++ RAI +Q RTIR+P+H+ ++ Sbjct: 134 ALLDLIQEGNIGLMKAVDKFDYRRGYKFSTYAMWWIRQSVTRAIADQARTIRIPVHMKEK 193 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKAL 234 + AR+ + EP+A+E+AE ++ D + ++RL S+D+P+G + + L Sbjct: 194 MGKVSGAARKFLEENGREPNADELAELMEISRDQMDEIMRLYSDTVSLDSPVGEEEDAML 253 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 ++ +ADE T + + + I + L EL +++ +L RFG + TLE+VGRE Sbjct: 254 MNFVADESMPEQYQTAEQGILSEQINEILSELTEREQTILRLRFGFVENRIWTLEEVGRE 313 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGL 322 +TRER+RQI+ + LR+L+ +T+ L Sbjct: 314 YHVTRERIRQIEGKALRKLKMKKETKSL 341 >UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria RepID=A9F3S6_SORC5 Length = 639 Score = 210 bits (534), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 100/230 (43%), Positives = 161/230 (70%) Query: 94 MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 153 ++E+NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+KF+ +RG++FSTYATWWIRQ Sbjct: 405 LVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 464 Query: 154 IERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRML 213 I RAI +Q RTIR+P+H+++ +N +RT+R L + EP+ EEIAE+++ P+D V ++L Sbjct: 465 ITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEYGREPTPEEIAEKMELPLDKVRKVL 524 Query: 214 RLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 ++ + S++TP+G + + L D + D+ P + + ++ + K L L ++ +V Sbjct: 525 KIAKEPISLETPIGEEEDSHLGDFIEDKSVISPAEAVINMNLAEQTRKVLKTLTPREEKV 584 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 L RFG+ TLE+VG++ +TRER+RQI+ + LR+LR +++ L Sbjct: 585 LRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKQLK 634 >UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacteria RepID=B2J5S6_NOSP7 Length = 378 Score = 209 bits (533), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 125/301 (41%), Positives = 173/301 (57%), Gaps = 43/301 (14%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRA-------------------------------- 83 DA + E+ PLL A+EEV ARR Sbjct: 66 DAVGAFFKEMARYPLLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEM 125 Query: 84 ---------LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 +G VA +R+MI SNLRLVV IA+RY NRG+ LDLI+EG +GL RA EKF Sbjct: 126 TEKQLESRLYQGRVA-KRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKF 184 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 DP++G++FSTYA WWIRQ I RAI N RTIRLPIHIV++LN + REL KL P+ Sbjct: 185 DPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPT 244 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 E+AE LD V + ++ +L + S++ +G + + L+D+L DE PE ++ Sbjct: 245 EGEMAEALDISVQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENM 304 Query: 255 MKQSIVKWLFE-LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 M+Q I + L + L ++++V++ R+GL E TLE+VG L+RERVRQIQ + +R+L Sbjct: 305 MRQEIWEVLGDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKL 364 Query: 314 R 314 R Sbjct: 365 R 365 >UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteria RepID=Q02AX1_SOLUE Length = 518 Score = 209 bits (533), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 100/225 (44%), Positives = 156/225 (69%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ ++E+NLRLVV +A++Y NRGL LLDLI+EGN+GL+RA +KF+ RG++FSTYATWW Sbjct: 279 AKKDLVEANLRLVVSVAKKYVNRGLHLLDLIQEGNIGLMRAADKFEYRRGYKFSTYATWW 338 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI +Q+RTIR+P+H+ + +N +LR REL +L P+ +EI ++D PV+ V Sbjct: 339 IRQAITRAIADQSRTIRIPVHMNESMNKFLRATRELEKELGRTPTNDEIGRRMDIPVEKV 398 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 ++ ++ S++TP+G D E AL D++ D P D + +++ L L+ K Sbjct: 399 QKLKTISRDPVSLETPVGRDGESALGDLIEDRWVGSPVDAVIESNVRDETAGILKTLSPK 458 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + +V+ RFG+ TLE++G+E +TRER+RQI+ + LR+LR Sbjct: 459 EEKVIRMRFGIGCEREHTLEEIGQEFDVTRERIRQIEAKALRQLR 503 >UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamydiales RepID=RPOD_CHLPN Length = 572 Score = 209 bits (533), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 102/233 (43%), Positives = 156/233 (66%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ M+ESNLRLV+ IA++Y NRGL+ LDLI+EGN+GL++AVEKF+ RG++FSTYATWW Sbjct: 317 AKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWW 376 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ + RAI +Q RTIR+P+H+++ +N LR A++L + EP+ EE+AE+L D V Sbjct: 377 IRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELAEELGLTPDRV 436 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + ++ + S+ +G SE + D L D P + T +K + + L L + Sbjct: 437 REIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKTLTDR 496 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 +R VL RFGLL + TLE+VG +TRER+RQI+ + LR++R ++++ L Sbjct: 497 ERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQL 549 >UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDN0_THET1 Length = 344 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/311 (41%), Positives = 176/311 (56%), Gaps = 27/311 (8%) Query: 32 EQEPSDNDLAEEELLSQGATQRVL-DATQLYLGEIGYSPLLTAEEEVYFARRALRG---- 86 E E + DL+ LL + + ++ D+ +YL EIG + LLTAEEEV A+ RG Sbjct: 22 ELEDLEADLSPASLLEEEMDRELIGDSLGIYLREIGRAQLLTAEEEVALAQAIERGQEAE 81 Query: 87 ------DV----------------ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGN 124 D+ A+R ++IE NLRLVV IARRY G+ L DLIEEGN Sbjct: 82 QRLQSDDISPEELDDLKKAVEEGKAARHKLIEHNLRLVVSIARRYVGHGMPLADLIEEGN 141 Query: 125 LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARE 184 LGL+RA EKFD RGFRFSTYATWWIRQ + R + RTIRLP+H+ + L R + Sbjct: 142 LGLMRAAEKFDWRRGFRFSTYATWWIRQAVTRGLAEGGRTIRLPVHVGEALTKIGRETQR 201 Query: 185 LSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKEN 244 LS +L EP+ +E+AE + + + S++ PLG D E L ++L D + Sbjct: 202 LSLELGREPTNQELAEATGLSPERIDEYKNASRLPLSLEAPLGEDGETNLGEVLEDTEAA 261 Query: 245 GPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQ 304 PE + + I + L LN +QR ++ R+GL G + TLE GR++G+TRER RQ Sbjct: 262 NPEHIADHTMLGEDIKRALERLNERQRAIIIMRYGLYGGQPMTLEAAGRKLGVTRERARQ 321 Query: 305 IQVEGLRRLRE 315 I+ E L RLR+ Sbjct: 322 IEQEALNRLRQ 332 >UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter michiganensis RepID=B0RI86_CLAMS Length = 347 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 122/309 (39%), Positives = 177/309 (57%), Gaps = 33/309 (10%) Query: 36 SDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA------ 89 +D+DL E L++ GA+ DA + YL +IG PLLTAE EV ARR G ++ Sbjct: 32 ADSDLPEPSLVTPGAST---DAVKDYLRQIGRVPLLTAELEVSVARRIEVGVLSQEVLDT 88 Query: 90 ---------------------SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLI 128 +++ ++ +NLRLVV IA+RY RGL LDLI+EGN+GL+ Sbjct: 89 RTDLTPAERREYQTLAQDGMRAKQHLVNANLRLVVSIAKRYTGRGLPFLDLIQEGNMGLV 148 Query: 129 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHK 188 RAVEKFD + GF+FSTYA+WWI+Q+I R + + +RTIR+P+H V+ +N REL + Sbjct: 149 RAVEKFDYQAGFKFSTYASWWIKQSITRGMADTSRTIRIPVHTVEHINRINAVQRELGDE 208 Query: 189 LDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL---GGDSEKALLDILADEKENG 245 L +PS EEIA + D PV V +L + S+ + GGD + + D++ D Sbjct: 209 LGRDPSMEEIARESDTPVTKVRYLLDRAQEPMSLQVLVGGSGGDGDTEMADLIEDADVTQ 268 Query: 246 PEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQI 305 P D M + + + L + EV+ RFGL G E +L V +++G+TRERVRQI Sbjct: 269 PIDVVTQQLMAAHVTRLIDGLAERDAEVVRMRFGLAGLEPRSLAFVSQQLGVTRERVRQI 328 Query: 306 QVEGLRRLR 314 + + L +LR Sbjct: 329 EKKVLAKLR 337 >UniRef50_D0YYF5 RNA polymerase sigma factor RpoS n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YYF5_LISDA Length = 282 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 108/277 (38%), Positives = 172/277 (62%), Gaps = 3/277 (1%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG 113 + T +YL ++ LLT EEE+ + + GD +R ++IESNLRLVV IA++ +RG Sbjct: 3 IQSVTGIYLKQLRSRALLTKEEEIELSIKVQAGDQKARAKLIESNLRLVVSIAKKMQHRG 62 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 L L DLI EGN+GLI AVEKF+P+ G+RFSTYATWWI+Q ++RAI N +R +RLP+HI K Sbjct: 63 LDLDDLINEGNIGLITAVEKFNPDYGYRFSTYATWWIKQAMDRAIHNHSREVRLPVHISK 122 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 EL +E+S K + + ++++ P +++ ++L+ R +S+D D Sbjct: 123 ELCTIYSAFKEMSTK-SEQVTIDQVSALTGSPKEEIEKILKYERRYSSLDDQF--DEGAK 179 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 +I+ D + + ++D + + L EL + +E++ARRFGL GYE TL++V Sbjct: 180 FSEIIPDHSKLDHTELLNEEDQTEVLAMLLAELKPRDQEIIARRFGLFGYEPHTLQEVAT 239 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 + LTRERVRQ+Q+ +RL ++ + + +E++ E Sbjct: 240 AVNLTRERVRQLQILAQQRLAAKMRDRNITLESMLVE 276 >UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JLG8_SYNJB Length = 320 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 120/295 (40%), Positives = 177/295 (60%), Gaps = 10/295 (3%) Query: 31 VEQEPSDNDLAEEELLSQG--ATQRVL--DATQLYLGEIGYSPLLTAEEEVYFARRALRG 86 V+ P E L G ATQ L D+ ++L E+ PLL AE+EV R G Sbjct: 12 VQNSPPPLKRVEVRLSKPGNRATQASLSEDSVGVFLREMARYPLLNAEQEVKLGRLIAEG 71 Query: 87 DVA---SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143 A ++R ++ +NLRLVV IA++Y NRG+ LDLI+EG +GLIRA EKF+ ERG++FS Sbjct: 72 GAAGERAKRELVRANLRLVVSIAKKYLNRGVPFLDLIQEGTIGLIRAAEKFEYERGYKFS 131 Query: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD 203 TYA WWIRQ I RA+ NQ R +R+P+H+V++LN R REL+ L+ P+ EIAE L+ Sbjct: 132 TYAYWWIRQGITRAVANQGRLVRIPVHMVEKLNQVKRIRRELTETLNRRPTQAEIAEALE 191 Query: 204 KPVDDVSRMLRLNE---RITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 D + +L L E + S+ TP+G + ++ L+ ++ D PE + + Sbjct: 192 ISPDKLDALLTLLEAGRQTLSLHTPVGKEEDRELMQLIEDANSLTPESQMDLHLLSAQLE 251 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 + L +L+ +++E+L R+GL TL ++G+ GL+RERVRQIQ +R+LR Sbjct: 252 EMLEQLSPREQEILKLRYGLKDGHLHTLSEIGQLFGLSRERVRQIQARAMRKLRH 306 >UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=Q9KHE4_ANASP Length = 390 Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 122/300 (40%), Positives = 172/300 (57%), Gaps = 41/300 (13%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRA--------LRGDV------------------- 88 DA + E+ PLL +EEV ARR L+ D+ Sbjct: 78 DAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVRDLQADLQLQIGQHPTKAQVAGQLEI 137 Query: 89 -------------ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 ++R+MI SNLRLVV IA+RY NRG+ LDLI+EG +GL RA EKFD Sbjct: 138 TEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFD 197 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 P++G++FSTYA WWIRQ I RAI N RTIRLPIHIV++LN + REL K PS Sbjct: 198 PDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSE 257 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 E+AE L+ V + ++ +L + S++ +G + + L+D+L DE PE ++ M Sbjct: 258 AEMAEALEISVPQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMM 317 Query: 256 KQSIVKWLFE-LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +Q I + L + L ++++V++ R+GL E TLE+VG L+RERVRQIQ + +R+LR Sbjct: 318 RQEIWEVLGDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLR 377 >UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteria RepID=B8HRG7_CYAP4 Length = 455 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 107/228 (46%), Positives = 157/228 (68%), Gaps = 1/228 (0%) Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 V ++ MI++NLRLVV +A++Y NRGL LLDLI+EG LGL RAVEKFDP +G+RFSTYA Sbjct: 214 VRAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAY 273 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I RAI Q+RTIRLP+HI ++LN + R++S + H PS E+IA +L+ V Sbjct: 274 WWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTPSIEDIATELEMTVP 333 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V +L R S++T +G D + L D+L + + PE+ + + + + K L +L Sbjct: 334 QVRELLVRVPRSVSLETKVGKDKDTELGDLL-ETDDLSPEEMMMRESLHRELEKLLADLT 392 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 +++R+V++ RFGL A +L D+GR + L+RERVRQI+ + L++LR+ Sbjct: 393 SRERDVISMRFGLGDGHAYSLADIGRALDLSRERVRQIEAKALQKLRQ 440 >UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacterium prausnitzii RepID=C7H329_9FIRM Length = 461 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 103/229 (44%), Positives = 153/229 (66%) Query: 85 RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFST 144 R + +RR + E+NLRLVV IA+++ LA LDLI+EGN+GLI+A EKFD +RGFRFST Sbjct: 219 RDGLNARRSLSEANLRLVVSIAKKHVGHNLAFLDLIQEGNIGLIKAAEKFDCDRGFRFST 278 Query: 145 YATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDK 204 YATWWIRQ I RAI +Q RTIR+P+H+V+ +N + +L ++ HEP+ EE+A+ +D Sbjct: 279 YATWWIRQAITRAIADQARTIRIPVHMVETINRMRQATNQLVYQNGHEPTPEELAKAMDM 338 Query: 205 PVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLF 264 V+ V + R+ + S+++P+G + + +L D +ADE P + Q I + L Sbjct: 339 SVERVREIQRMAQEPASLESPVGEEEDSSLGDFVADENAEAPGKAADRAMVAQQINQALK 398 Query: 265 ELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 L ++ +V+ RFGL TLE+VGR+ G+TRERVRQI+ + +R+L Sbjct: 399 SLTPREEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKL 447 >UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZY7_9FIRM Length = 447 Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 198/358 (55%), Gaps = 53/358 (14%) Query: 8 VHDLNEDAEFDENGVEVFDEKALVEQEP---SDNDLAEEELLSQGA-------TQRVL-- 55 ++ L ++ FDEN VE E L+++ + + AEE + G +R++ Sbjct: 79 IYTLCDEIPFDENDVECMYE--LLKENGIGIKEFEAAEENIAKNGERADKVVDIRRIVRT 136 Query: 56 -----DATQLYLGEIGYSPLLTAEEEVYFA-----------------RRALRGDVASRRR 93 D ++YL EIG PLLT EEE A R G ++ Sbjct: 137 SIGIDDPVKMYLKEIGQVPLLTREEEKILATQVKHALAKQNEIRERLERLKEGSATYKKE 196 Query: 94 M-----------------IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 M E+NLRLVV IA+ + +RG+ LDLI+EGNLGL++AV+KFD Sbjct: 197 MKLLDEYKQDYNKAMHQLCEANLRLVVSIAKNHKDRGMHFLDLIQEGNLGLMKAVDKFDV 256 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 +R F+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ ++ R +R L +L EP E Sbjct: 257 DRNFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIHKLTRISRTLLQELGREPKPE 316 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 EIA+++D + V +LR+++ S++ P+G + + L D + D + P D ++ Sbjct: 317 EIAKEMDITTEKVRDILRISQEPVSLEKPIGEEEDSHLGDFIPDTEVPSPLDVAFSSMLR 376 Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +++ L L ++R VL RFGL+ + TLE+VG++ +TRER+RQI+ + +R+L+ Sbjct: 377 DELLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKLK 434 >UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexaceae RepID=A5UPS4_ROSS1 Length = 402 Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 114/286 (39%), Positives = 176/286 (61%), Gaps = 27/286 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFA---------RRAL-RGDVAS--------------- 90 D ++YL EIG PLL+AE+EV A RRAL R + +S Sbjct: 104 DPVRMYLQEIGQVPLLSAEQEVMLAKAMEAGHRARRALEREEYSSWQERVMYEQQVAQGN 163 Query: 91 --RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 R+ +I++NLRLVV IA++Y + GL ++DL++EGN+GL+RAVEKFD +G +FSTYATW Sbjct: 164 EARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFSTYATW 223 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RAI +Q+RTIRLP+H+ + ++ RT+ +L + EP+ EEIA+ + Sbjct: 224 WIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIADAMGISSTK 283 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V R L + S++ P+G + E + D + D++ + P + +++ + + L +L Sbjct: 284 VRRTLEASMHPLSLEMPVGQEGEGRMGDFIEDDRISTPAEAAAASMLREQLEEVLQKLPE 343 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++R+++ R+GL TLE+VG E G+TRER+RQI+ LR+LR Sbjct: 344 RERKIIQLRYGLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLR 389 >UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmataceae RepID=D1ASA0_ANACI Length = 649 Score = 206 bits (525), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 96/226 (42%), Positives = 158/226 (69%), Gaps = 1/226 (0%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ MI++NLRLVV IA++Y NRGL LDL++EGN+GL++AV+KFD +RG++FSTYATWW Sbjct: 412 AKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWW 471 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 +RQ I RAI +Q RTIR+P+H+++ +N RT R++ H++ EP+ EE++ +L V+ + Sbjct: 472 VRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSARLGMNVEKI 531 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 +++++ + S+++P+G D D + D++ PE+ D+++ K L L K Sbjct: 532 RKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVKPENAAVLADLREITTKVLSTLTPK 591 Query: 270 QREVLARRFGL-LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + +L RFG+ G + TLE+VG+ +TRER+RQI+ + LR+LR Sbjct: 592 EERILRMRFGIGKGGKDHTLEEVGKLFNVTRERIRQIEAKALRKLR 637 >UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacteria RepID=RPOD_TREPA Length = 611 Score = 206 bits (525), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 158/239 (66%), Gaps = 3/239 (1%) Query: 79 FARRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 AR RG V ++ ++I +NLRLVV IA++Y NRGL DL++EGN+GLI+AVEKF+ Sbjct: 359 MARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFE 418 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 +G++FSTYATWWIRQ I R+I +Q RTIR+P+H+++++N R +R+L K EPS Sbjct: 419 YRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSD 478 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 EEIA+QL V+ V ++ + S++TP+G + + +L D + D P T+ + Sbjct: 479 EEIAQQLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLL 538 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 K+ + L L A++ EVL RFGL G + TLE+VG +TRER+RQI+ + L+RLR Sbjct: 539 KEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLR 597 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 41 AEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR 100 A + LLS + D +LYL +IG LLTAE+EV ++R G+ + + +S L Sbjct: 103 ARQNLLSNARNIALDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLL 162 Query: 101 L--VVKIARRYGNRGLALLDLIEEG 123 L I R + LA+LD E G Sbjct: 163 LPEFYHIGRSLSKKALAVLDPAESG 187 >UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=A0L5T1_MAGSM Length = 683 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 163/233 (69%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ RG++FSTYATWW Sbjct: 445 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEWRRGYKFSTYATWW 504 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I R+I +Q RTIR+P+H+++ +N +RT+R++ ++ EP+ EEIAE++ ++ V Sbjct: 505 IRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMVQEMGREPTPEEIAERMSMSLEKV 564 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 ++L++ + S++TP+G + + L D + D+ P + +++ + + L L ++ Sbjct: 565 RKVLKIAKEPISLETPVGDEEDSHLGDFIEDKSMLSPSEHAIMSNLRDTTGRVLQTLTSR 624 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 + VL RFG+ TLE+VG++ +TRER+RQI+ + LR+LR +++ L Sbjct: 625 EEHVLRMRFGIGLPTDHTLEEVGKQFNVTRERIRQIEAKALRKLRHPTRSRKL 677 >UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptosporangineae RepID=D2AWC8_STRRD Length = 452 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 111/294 (37%), Positives = 175/294 (59%), Gaps = 27/294 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARR-------------------ALRGDVA------- 89 D+ YL IG LLTA +EV A+R A R D+ Sbjct: 154 DSVHTYLKSIGRRTLLTAAQEVELAKRIEAGLYAESKLEAEPGLSAAARDDLEWVAEDGR 213 Query: 90 -SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 ++ M+E+NLRLVV +A++Y +RG+ALLD+++EGNLGLIRAVEKFD +G++FSTYA W Sbjct: 214 RAKDHMLEANLRLVVSVAKKYTDRGMALLDVVQEGNLGLIRAVEKFDYTKGYKFSTYAMW 273 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I+R + RTIRLP+H+++ L+ R R++ +L EP+ EE+A +LDK D Sbjct: 274 WIRQAIQRGFADSARTIRLPVHVLEMLSKLSRVERDMHQRLGREPTPEELAVELDKTPDQ 333 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 + +LR + + S++ +G D E + D++ D + + + + L L+ Sbjct: 334 IEELLRTSRQPISLNATIGEDGETTIGDLIEDVDSPEASEVVDRQLLGEQLRGVLGNLSP 393 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++ +++A RFGL+ + TL+++G+ +GLTRER+RQ++ E L +LR T+ L Sbjct: 394 REAKIMALRFGLVDGKPHTLDEIGKHLGLTRERIRQLEKESLSKLRHPSNTRPL 447 >UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma RepID=B1AIY8_UREP2 Length = 448 Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 114/296 (38%), Positives = 178/296 (60%), Gaps = 20/296 (6%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA----SRRRMIESNLRL 101 S T++V D + YLG +G S +L ++EE +A+ + D + + ++ SN+RL Sbjct: 145 FSSTTTEKVDDGIKAYLGVLGESKMLRSDEETEYAKMVISDDPSLVKIGKNQLYTSNMRL 204 Query: 102 VVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQ 161 V IA++Y NRGL L DLI+EG+ GL++A++KFD E+G +FSTYATWWIRQ+I RAI +Q Sbjct: 205 VTSIAKKYLNRGLDLEDLIQEGSSGLLKAIDKFDHEKGHKFSTYATWWIRQSITRAIADQ 264 Query: 162 TRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDK------------PVDDV 209 R IR+P+H+V+ +N + R L +L +P+AEEIA+ ++K V Sbjct: 265 ARQIRIPVHMVETINKLTKAERNLIQELGRDPTAEEIAQAMNKVSQAKNQKEQLITAQKV 324 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE--LN 267 + +LN S+D +G D E D ++D++ PE T+ + I +FE LN Sbjct: 325 VEIKKLNVDPVSLDKQIGHDEESQFSDFISDDEIISPEKYTEKKALNDQI-NEMFEKVLN 383 Query: 268 AKQREVLARRFGLLGYE-AATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++ V+ R+GLL +E TLE+VG +G+TRER RQI+ + +R+L+ +T L Sbjct: 384 DNEQRVIKMRYGLLPFERPYTLEEVGEYLGVTRERARQIESKAIRKLKHPSKTAKL 439 >UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WQH6_CYAA5 Length = 297 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/305 (41%), Positives = 175/305 (57%), Gaps = 40/305 (13%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFA-----------RRALRGD----VA----SR 91 T++ +D + YL IG +PLL+ EE+ A + AL + VA +R Sbjct: 3 TKKKVDTVRHYLQSIGKTPLLSGPEEIKLAEEIQAMLPLLEKEALSKEEEKIVAKGQRAR 62 Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 151 +MI++NLRLVV IA++Y N GL+LLDLI+EG+LGLIR VEKFDP RG++FSTYA WWIR Sbjct: 63 DKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPSRGYKFSTYAYWWIR 122 Query: 152 QTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV-- 209 Q I RAI Q+RTIRLPIHI + LN Y ++ REL+ KL +P+ +EIAE +D VD + Sbjct: 123 QGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQQEIAENMDISVDKLRF 182 Query: 210 -------SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKW 262 ++ LN I T LG +L DE P D + + I + Sbjct: 183 LQQAAFKTKSRSLNIVIDENHTELG--------QLLPDEDSVSPSDFVKQQEKISQINRM 234 Query: 263 LFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 L L+ +Q+EV+ RFGL + + + +G + G++ ER RQI LR IL+ Q Sbjct: 235 LENLSPRQKEVIILRFGLRDGKQLSYKAIGEQCGISHERARQIYSRALR----ILRKQSS 290 Query: 323 NIEAL 327 IE L Sbjct: 291 KIERL 295 >UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8E5_COPPD Length = 360 Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 119/317 (37%), Positives = 194/317 (61%), Gaps = 13/317 (4%) Query: 4 NTLKVHDLNED---AEFDENGVEVFDEKALV--EQEPSDNDLAEEELLSQGATQRVLDAT 58 N+L DL+ D +E G+ + E+ + E + L EEE ++V + Sbjct: 36 NSLNPEDLDVDEIDMFLEEKGISIIPEEPRIYGENVSYEQGLPEEE-------EQVRELM 88 Query: 59 QLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 Q+YL ++G LLTAE+E A+R + D A+R +I+ NLRLV+ IA++Y N+GL+ ++ Sbjct: 89 QVYLHDVGQYDLLTAEQERILAQRIEKNDAAAREELIKRNLRLVISIAKKYTNKGLSFME 148 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI+EGN+GLI+AVEKFD +G++FSTYATWWI+Q I RA+ +Q+R IR P+H+V+ + + Sbjct: 149 LIQEGNIGLIKAVEKFDWRKGYKFSTYATWWIKQAITRALADQSRLIRRPVHMVEAYHQF 208 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRL-NERITSVDTPLGGDSEKALLDI 237 + EL ++L EP+ +E+AE L D V + ++ N S+D +G + + D Sbjct: 209 QKKLNELYNQLGREPTVQELAEALGFSEDKVLALKQMSNPEPQSLDATIGDQDDSRVQDF 268 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 + D E + +++ ++ + + L LN ++RE++ R+GL+ TLE+VG + Sbjct: 269 VPDTGEGAADKYFWEEERRRVLEEVLSTLNKREREIIEMRYGLVDGVEHTLEEVGASFNI 328 Query: 298 TRERVRQIQVEGLRRLR 314 TRERVRQI+ + LR+LR Sbjct: 329 TRERVRQIETKALRKLR 345 >UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R064_9DELT Length = 555 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 150/225 (66%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ R+++SNLRLVV +A++Y RGL LLDL++EGN+GL++AVEKF+ RG++FSTYATWW Sbjct: 316 AKNRLVQSNLRLVVSVAKKYAGRGLQLLDLVQEGNIGLMKAVEKFEYRRGYKFSTYATWW 375 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ + RAI +Q RTIR+P+H++ +N L+ A+E + EP+ EE+AE L + V Sbjct: 376 IRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEYQRQHGREPTPEEMAEHLGVDIAKV 435 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 +L++ + S+DTP+G + L D + D P++ T D ++ ++ + L L + Sbjct: 436 KSILKIAKEPLSLDTPVGSGEDSFLSDFIEDADSTSPDEATIYDSLQDNLARVLKTLTPR 495 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + VL RFG+ TLE+VG +TRER+RQI+ + L++L+ Sbjct: 496 EEMVLRLRFGIDTATDLTLEEVGENFSVTRERIRQIEAKALKKLK 540 >UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus RepID=B8G577_CHLAD Length = 314 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/287 (42%), Positives = 169/287 (58%), Gaps = 27/287 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFA------RRA-----------------LRGDVAS-- 90 D LYL EIG PLLT E+E A RRA L VA+ Sbjct: 13 DTIVLYLNEIGAEPLLTFEQEQQLAQTIAQGRRAAERLTNEPSLHSTEKKRLAAQVAAGE 72 Query: 91 --RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 R ++I SNLRLVV IARRY GL LLDLI+EG++GL+RAV+KFD RG +FSTYAT+ Sbjct: 73 QARAQLINSNLRLVVSIARRYQGHGLTLLDLIQEGSIGLMRAVDKFDAGRGLKFSTYATY 132 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ+I RAI + +RT+RLP+H+ + L+ R +EL+ +LD EP+ EE+A V+ Sbjct: 133 WIRQSIGRAIADHSRTVRLPVHLGERLSRLARLRQELAQQLDREPTLEELANAAGLSVEQ 192 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V R + TS+D D AL +IL D + P D + ++ + L +L+ Sbjct: 193 VERAEQAGLAPTSLDEAHTEDGGGALSEILTDPLQPTPFDEVSEGMLQADVQAALSQLSP 252 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 ++R +L R+GL G TLE +G+ + LTRERVRQ++ E LR+LR+ Sbjct: 253 RERNILRLRYGLDGEPMHTLEQIGQRLRLTRERVRQLEYEALRKLRD 299 >UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci RepID=C1CW22_DEIDV Length = 547 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 118/288 (40%), Positives = 169/288 (58%), Gaps = 29/288 (10%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA-------------------------- 89 D + YL EIG LLT EEE+ ARR G+ A Sbjct: 246 DPVRQYLHEIGRVSLLTLEEEIALARRIEEGEEARKLLEEDVELDDRGRRRLMRQMEDGA 305 Query: 90 -SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 +R+ +IE+NLRLVV IA++Y RGL LDLI+EGN GLIRAVEKF+ R ++FSTYATW Sbjct: 306 NARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIRAVEKFEYRRRYKFSTYATW 365 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD- 207 WIRQ I RAI +Q RTIR+P+H+V+ +N RTAR+L +L E + EEIAE + D Sbjct: 366 WIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREATHEEIAEAMGPGWDA 425 Query: 208 -DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFEL 266 V + ++++ S++TP+G + + D + DE + P + + + + K L +L Sbjct: 426 AKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPVENAAKTLLSEELEKALSKL 485 Query: 267 NAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++ VL R GL+ TLE+VG+ +TRER+RQI+ + LR+L+ Sbjct: 486 TEREAMVLKFRKGLVDGREHTLEEVGQRFSVTRERIRQIENKALRKLK 533 >UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteobacteria RepID=Q1QBP8_PSYCK Length = 648 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 102/246 (41%), Positives = 162/246 (65%), Gaps = 3/246 (1%) Query: 80 ARRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 ARR G+ +RR M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ Sbjct: 396 ARRMAIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 455 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R +R+L ++ EP+ E Sbjct: 456 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINRVSRQLLQEMGREPTPE 515 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 E+ E+L+ V ++L++ + S++TP+G D + L D + D + P D ++ Sbjct: 516 ELGERLEMDEAKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGTISSPVDDATAAGLR 575 Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 ++ L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR+LR Sbjct: 576 EATRDVLGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP 635 Query: 317 LQTQGL 322 +++ L Sbjct: 636 SRSEHL 641 >UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsutsugamushi RepID=B3CQ43_ORITI Length = 615 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 101/272 (37%), Positives = 174/272 (63%), Gaps = 3/272 (1%) Query: 54 VLDATQLYLGEIGYS---PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG 110 ++ +T Y EI + PL +E + + R ++++M+ESN RLVV +A+ Y Sbjct: 327 LIKSTIDYFSEIEQAMLLPLKRFKEIIQAIQNGERKVRVAKKKMVESNTRLVVHVAKPYV 386 Query: 111 NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH 170 NRGL LDLI+EGN+GL++AV+K++ G++FST ATWW+RQ+I RA+ +Q RTIR+P+H Sbjct: 387 NRGLPFLDLIQEGNIGLMKAVDKYNYLLGYKFSTCATWWVRQSISRAVADQARTIRIPVH 446 Query: 171 IVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDS 230 + ++ +R ++++ ++L +EP+A EIAE+L P+D V +++R+ + S++ P+G + Sbjct: 447 MADTISKIVRVSKQMHNELGYEPTASEIAEKLSMPIDKVKKVMRIAKEPVSLENPIGEED 506 Query: 231 EKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLED 290 L D + D+ P + ++++ + L L A++ VL RFG+ TLE+ Sbjct: 507 GSCLSDFIEDKNAILPIEEAIKFSLRETTTRALSTLTAREERVLRLRFGIGLPTDYTLEE 566 Query: 291 VGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 VG E +TRERVRQI+ + LR+L+ ++++ L Sbjct: 567 VGGEFKVTRERVRQIEAKALRKLKHPVRSKKL 598 >UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASS7_RUBXD Length = 282 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 122/266 (45%), Positives = 167/266 (62%), Gaps = 4/266 (1%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY 109 AT+ VL TQ YLG I LLTA EEV +RRA GD A+RRR+IESNLRLVV IA+RY Sbjct: 4 ATEDVL--TQ-YLGRIREGRLLTAGEEVELSRRARAGDGAARRRLIESNLRLVVAIAKRY 60 Query: 110 GNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 RG+ DLI+EGN GLIRAVEKFDPE G RFSTYATWWIRQ + RA+ +Q R +RLP Sbjct: 61 RGRGVPFEDLIQEGNAGLIRAVEKFDPEMGNRFSTYATWWIRQAVTRAVADQGRAVRLPA 120 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD 229 H+V + R LS +L EP+ EE+A +L ++ R+ +++ I+S+ LG + Sbjct: 121 HVVDSVYRLRRAESALSVELGREPTDEEVAGRLGTSPEEARRLREVSQPISSISARLGDE 180 Query: 230 SEKA-LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATL 288 + A L D+L DE + + + + + + L ++ VL R GL G A TL Sbjct: 181 EDGAELGDLLPDEAASEEYARVEAGPWRGVLREAVGSLPEREARVLRLRHGLDGERARTL 240 Query: 289 EDVGREIGLTRERVRQIQVEGLRRLR 314 +V +G+++ER RQ++++ LR LR Sbjct: 241 REVSEILGISQERARQVELKALRTLR 266 >UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Proteobacteria RepID=RPOD_COXBU Length = 698 Score = 200 bits (509), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 160/246 (65%), Gaps = 3/246 (1%) Query: 81 RRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137 RR G+ SRR MIE+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ Sbjct: 446 RRVAIGEAKSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 505 Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197 RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R +R++ + E + EE Sbjct: 506 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEE 565 Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257 + ++D P + V ++L++ + S++TP+G D + L D + D P D + + Sbjct: 566 LGRRMDMPEEKVRKVLKIAKEPISMETPIGEDEDSNLGDFIEDINMESPVDFATSAGLME 625 Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 + + L L ++ +VL RFG+ TLE+VG++ +TRER+RQI+ + LR+LR Sbjct: 626 ATREILSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 685 Query: 318 QTQGLN 323 + + L+ Sbjct: 686 RAEKLH 691 >UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC14_9BACT Length = 479 Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 104/246 (42%), Positives = 154/246 (62%), Gaps = 3/246 (1%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 +R R + +R M+E NLRLVV IAR Y NRG LDLI+EGN+GL+RAVE+F+ RG+ Sbjct: 233 KRWQRKALEARTEMVECNLRLVVSIAREYQNRGQPFLDLIQEGNIGLMRAVERFEYRRGY 292 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +F+T ATWWIRQ I R+I NQ RTIR+P H++ L +R R+++ + +P+AE++A Sbjct: 293 KFATCATWWIRQAISRSIANQARTIRIPTHMIDLLAKLIRVQRQMTQESGRDPTAEDLAG 352 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 +L P+ V +L++ E S+ TP+G + L D + D P +++ I Sbjct: 353 ELHLPLRRVRALLKMAEEPISIHTPVGEEGGSRLGDFIEDHSVEDPSKQAAVAMLREKIN 412 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI---L 317 L L ++RE+L +RFGL+ TLE++GR +TRERVRQI+ + LR++R Sbjct: 413 AVLHTLTEREREILEQRFGLIDGRERTLEEIGRHFKVTRERVRQIEAKALRKMRHPERRR 472 Query: 318 QTQGLN 323 Q QGL+ Sbjct: 473 QLQGLS 478 >UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JRK5_SYNJA Length = 361 Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 126/326 (38%), Positives = 176/326 (53%), Gaps = 42/326 (12%) Query: 31 VEQEPSDNDLAEEELLSQGATQRVL--DATQLYLGEIGYSPLLTAEEEVYFARR------ 82 +E E + D A E L GA+ L DA YL IG P + EE+ +R+ Sbjct: 23 LEAESASQDPAAEADLEPGASGLRLNEDAVDHYLNTIGRVPRIDHAEEIELSRKIQQKLL 82 Query: 83 -----------------------ALRGDVAS-----------RRRMIESNLRLVVKIARR 108 AL+ V++ +R++I +NLRLVV +A++ Sbjct: 83 IDQARREWRQQWGQDPSDEELAAALQIPVSTLRSRIRQGEQAQRKLINANLRLVVSVAKK 142 Query: 109 YGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP 168 Y NRG+ LDLI+EGN+GLIRA EKF+ ERGFRFSTYA WWIRQ I R I NQ RTIRLP Sbjct: 143 YLNRGVPFLDLIQEGNMGLIRATEKFNAERGFRFSTYAHWWIRQGITRCIANQARTIRLP 202 Query: 169 IHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG 228 +H+V ++ + RT REL P+ E+AE L V + + + S+D P+G Sbjct: 203 VHMVDKVRLLKRTNRELMKARGRRPTEAELAEALGIKVKKLRMIQQAAALPLSLDVPVGQ 262 Query: 229 DSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATL 288 + E L D+L DE++ P + ++Q + + L +R+VL R+GL G A TL Sbjct: 263 EGESRLGDLLPDERQEQPFEEILVQSLRQDVRSAMQALKPIERQVLELRYGLDGQRARTL 322 Query: 289 EDVGREIGLTRERVRQIQVEGLRRLR 314 +VG LTRER+RQI+ + LR+LR Sbjct: 323 REVGDHFNLTRERIRQIERDALRKLR 348 >UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKM1_THEYD Length = 479 Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 102/225 (45%), Positives = 150/225 (66%), Gaps = 1/225 (0%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ +I NLRLVV IA+ Y RGL LLDLIEEGN+GL++AV+KF E+GF+FSTYATWW Sbjct: 236 TKNELITRNLRLVVNIAKNYVGRGLPLLDLIEEGNIGLMKAVDKFKYEKGFKFSTYATWW 295 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RA+++QT+TIR+P+H+++ N + +REL+ +L EP+ EEIAE+L PV V Sbjct: 296 IRQAITRALIDQTKTIRVPVHMMEFYNRVTKASRELTQQLGREPNNEEIAEKLGVPVRKV 355 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + R + + TP+ GD + L D + D+ P + ++ + I + L L K Sbjct: 356 EEVFRAIQDPIGLQTPI-GDEDTELEDFIGDKTSPSPVSEAERTELSEHIQRILKTLTPK 414 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + +V+ RFG+ TLE+VGR + +TRERVRQI+ + LR+L+ Sbjct: 415 EEKVIKMRFGIGEDRDHTLEEVGRYLSITRERVRQIETKALRKLK 459 >UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NY91_9DELT Length = 540 Score = 200 bits (508), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 94/225 (41%), Positives = 154/225 (68%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ R++++NLRLVV +A++Y RGL LLDLI+EGN+GL++AVEKF+ RG++FSTYATWW Sbjct: 302 AKNRLVQANLRLVVSVAKKYAGRGLQLLDLIQEGNIGLMKAVEKFEYRRGYKFSTYATWW 361 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ + RAI +Q RTIR+P+H++ +N L+ A+E + EP+ +E+A+ L V V Sbjct: 362 IRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEFQRQHGREPTPDEMAQHLGVEVAKV 421 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 +L++ + S+DTP+G ++ L D + D + P++ T ++++ ++ + L L+ + Sbjct: 422 KSVLKIAKEPLSLDTPVGNSNDSFLADFIEDTEAASPDEATIYENLQSNLRRVLKTLSPR 481 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + VL RFGL TLE+VG +TRER+RQI+ + L++L+ Sbjct: 482 EEMVLRLRFGLDTAMDLTLEEVGENFAVTRERIRQIEAKALKKLK 526 >UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Planctomycetaceae RepID=D2R2I8_9PLAN Length = 545 Score = 199 bits (507), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 101/235 (42%), Positives = 153/235 (65%) Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 A++R + NLRLVV IA++Y NRGL+ LDLI+EGN GL+RAV+KF+ RG++FSTYATW Sbjct: 291 AAKRVLSAGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEYARGYKFSTYATW 350 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RAI +Q+RTIR+P+H++ ++ R+L +L EP+ EE+A +DD Sbjct: 351 WIRQAITRAIADQSRTIRVPVHMIDTMSKVRAVTRQLVQELGREPTPEEVARVAGLTLDD 410 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 +L++ + S+D P+G + + LAD +E P T +K I + + LN Sbjct: 411 ARCVLKMARQPLSLDQPVGDHDDSYFGEFLADHREEDPLYDTHQQALKHQIEEAMQGLNY 470 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 ++RE+L R+GL A TLE+VG+ +TRERVRQI+ + +R+L++ + + L Sbjct: 471 REREILRLRYGLTDGYAYTLEEVGKIFSVTRERVRQIETKAVRKLQQPYRNRSLT 525 >UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZE6_ERYRH Length = 459 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 178/299 (59%), Gaps = 12/299 (4%) Query: 28 KALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS---PLLTAEEEVYFARRAL 84 K +V+ +D +LAE L++ D + YL E G LT Y+ Sbjct: 162 KEIVDPAITDEELAER--LTENQIGYFFDDFEAYLTENGDEENLAFLTNWVATYY----- 214 Query: 85 RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFST 144 + +RR +I +NLRLVV IA++Y RG+ LDLI+EGN+GL++AVEKFD +GF+FST Sbjct: 215 -DGLEARRILISANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLVKAVEKFDYTKGFKFST 273 Query: 145 YATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDK 204 YATWWIRQ I RAI +Q RTIR+P+H+V+ +N R R L L EP+AEEIA +++ Sbjct: 274 YATWWIRQAITRAIADQARTIRIPVHMVETINKLTRIQRSLVQTLGREPTAEEIAAEMEN 333 Query: 205 PV-DDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL 263 + V + ++ S++TP+G + + L D + D+ P++ + +K+ I L Sbjct: 334 ITPEKVREIQKIALDPVSLETPIGEEDDSHLGDFIEDKDALSPDEYANNQLLKEEIKMVL 393 Query: 264 FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 L ++ +VL RFGL TLE+VG+E +TRER+RQI+ + LR+L+ +++ L Sbjct: 394 EGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKRL 452 >UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia RepID=Q5GSP3_WOLTR Length = 649 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 94/235 (40%), Positives = 158/235 (67%), Gaps = 3/235 (1%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ MI++NLRLVV IA++Y NRGLALLDLI+EGN+GL++AV+KFD +RG++FSTY TWW Sbjct: 412 AKQGMIKANLRLVVSIAKKYSNRGLALLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWW 471 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 +RQ+I RAI Q++ +R+P+H+V+ ++ R R+L+H++ EP+ EE++ +L P++ + Sbjct: 472 VRQSITRAIPEQSKVVRIPVHMVEIISKINRALRKLTHEMGREPTLEELSMELGMPLERI 531 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 +++++ S+D P G D D + D++ + PED D++ L L K Sbjct: 532 RKVMKIARDPVSLDAPTGKDDSSTFGDCIEDKRVSKPEDAAILTDLRCITTNLLATLTPK 591 Query: 270 QREVLARRFGLLGYEAA--TLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 + ++ RFG LG + TLE++G +TRER+RQ++ + LR+L+ + + L Sbjct: 592 EERIIRMRFG-LGKDCKEHTLEEIGCIFKVTRERIRQVESKALRKLKHPCRARKL 645 >UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi (class) RepID=A9AU99_HERA2 Length = 391 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/292 (38%), Positives = 171/292 (58%), Gaps = 27/292 (9%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA--------------------- 89 ++ V D+ Q+YL EIG LLTAEEE+ A++ G A Sbjct: 88 SEAVEDSVQMYLREIGEVELLTAEEEITLAKQIETGRKAEHQLQTEQYATWDERTALERR 147 Query: 90 ------SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143 RR++ ++NLRLVV +A++Y ++ +DLI+EGN+GL+RAVEKFD +G RFS Sbjct: 148 VDFGNEGRRKLTQANLRLVVSVAKKYIGNHMSFMDLIQEGNIGLMRAVEKFDYRKGNRFS 207 Query: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD 203 TYATWWIRQ + RAI Q+RTIRLP+H+ + + R A +L L E + +E+A+ L Sbjct: 208 TYATWWIRQAVTRAIAEQSRTIRLPVHLSESIAQMRRVAYQLEQALQREATPDELADALG 267 Query: 204 KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL 263 + V RML + + S++ P+G + + + + LAD+ + P + ++ + L Sbjct: 268 VSLRKVKRMLNASVQPVSLEQPIGKEGQGRVGEFLADDTDEAPLEQATRMMLQDELADAL 327 Query: 264 FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 +L ++R++L R+GL + TLE+VG E G+TRER RQI+ E +R LR+ Sbjct: 328 SQLPDRERQILLLRYGLADGKRRTLEEVGAEFGITRERTRQIEAEAMRHLRQ 379 >UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium difficile RepID=C9XJA1_CLODC Length = 301 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 108/275 (39%), Positives = 175/275 (63%), Gaps = 5/275 (1%) Query: 43 EELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV 102 E + G++ V +A ++YL EI +L+A EEV A+ + ++ + I SN RLV Sbjct: 17 ENYICVGSSN-VSNAMKMYLKEIEEYKMLSAGEEVELAKEIINSSSVAKEKFINSNYRLV 75 Query: 103 VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQT 162 V IA+RY + +LDLI+ GN+GLI+AVEK+D ++G++FSTYATWWI+Q+I R I + Sbjct: 76 VSIAKRYKRDSIDMLDLIQAGNIGLIKAVEKYDYKKGYKFSTYATWWIKQSITRYIDDCE 135 Query: 163 RTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSV 222 TIR+PIH+ + +N + +EL + L EP+ +EIA+ VD V +LR ++ + S+ Sbjct: 136 NTIRIPIHLHQRINFVKKKKQELLNVLLREPTIDEIADACGLEVDKVLELLRRDKNVVSL 195 Query: 223 DTPLGGDSEKALLDIL---ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFG 279 DTPL D + +L++ + AD K+ + Q ++K+ I + L L ++++VL RFG Sbjct: 196 DTPLKEDEDSSLVEFIPSDADFKDVVIHEVEQ-HNLKEKIEELLTGLGEQEQQVLRMRFG 254 Query: 280 LLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + + TLE +G+ G+TRER+RQI+ + +R+LR Sbjct: 255 IDDDDPKTLEQIGKVFGVTRERIRQIEAKAIRKLR 289 >UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM97_9FIRM Length = 394 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 102/265 (38%), Positives = 163/265 (61%), Gaps = 12/265 (4%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA------------SRRRMIESNLRL 101 + D +LYL E G +PLLT+E+E+ A+ G + +++ M +NLRL Sbjct: 113 ITDPVRLYLRECGTTPLLTSEQEMKLAQTIEIGKMPEATDEQKRMAAEAKKEMANANLRL 172 Query: 102 VVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQ 161 VV IA++Y RG+ LDLI+EGN+GL++AV+KFD +G++FSTYATWWIRQ I R+I +Q Sbjct: 173 VVSIAKKYPGRGMPFLDLIQEGNMGLLKAVDKFDYTKGYKFSTYATWWIRQAITRSIADQ 232 Query: 162 TRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITS 221 RTIR+P+H+V+ +N R R + E + EE+A++++ V+ + + + S Sbjct: 233 ARTIRVPVHMVETINKMNRVGRHFLQEHGREATNEELAKEMETSVEKIREAKKAAQDPIS 292 Query: 222 VDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL 281 ++TP+G + L D + D+K PED ++ I + L L +++ V+A R+G+ Sbjct: 293 LETPIGEKEDSHLGDFIEDQKTASPEDEAAATMRREQIHQLLETLTEREKGVIALRYGID 352 Query: 282 GYEAATLEDVGREIGLTRERVRQIQ 306 TLE+VG+ G+TRER+RQI+ Sbjct: 353 DGTQRTLEEVGKYFGVTRERIRQIE 377 >UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=B2IZW2_NOSP7 Length = 332 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/322 (38%), Positives = 176/322 (54%), Gaps = 48/322 (14%) Query: 38 NDLAEEELLSQGATQRVL---DATQLYLGEIGYSPLLTAEEEVYFARRA----------- 83 N+L+ + L +++L D + YL EIG PLLT E+E+ FA++ Sbjct: 2 NNLSHQYLEESNKKEKLLYTADTVRAYLREIGRIPLLTHEQEINFAKQVQKMMALLATKE 61 Query: 84 -----------------------------LRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 L ++++MI++NLRLVV IA++Y L Sbjct: 62 KLAIQLKRQPTQKEWIENINIGEKSLLQQLHQGQKAKQKMIQANLRLVVSIAKKYQRHNL 121 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 LDLI+EG+LGL R VEKFDP +G++FSTY WWIRQ I RAI Q RTIRLPIHI ++ Sbjct: 122 DFLDLIQEGSLGLERGVEKFDPTKGYKFSTYGYWWIRQAITRAIAEQGRTIRLPIHITEK 181 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKAL 234 LN R REL+ KL P+A +IAE+L + L L + S++ +G D + L Sbjct: 182 LNKIKRIQRELTQKLGRTPTAVDIAEELSLDPKQIRDYLLLARQPVSLELRVGSDKDIEL 241 Query: 235 LDILADEKENG--PEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 D+L D NG PE ++Q+I L +LN +QR++L RFGL +L ++G Sbjct: 242 QDMLED---NGLSPELYADHKFLQQNIQNLLSKLNPQQRQILTFRFGLTDGNELSLAEIG 298 Query: 293 REIGLTRERVRQIQVEGLRRLR 314 + +G++RERVRQI+ + L LR Sbjct: 299 QRMGISRERVRQIEQQALGSLR 320 >UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2H3_ACIFD Length = 337 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 116/285 (40%), Positives = 155/285 (54%), Gaps = 26/285 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASR------------------------ 91 D +LYLG+IG LLT ++E RR R A R Sbjct: 39 DLVRLYLGDIGSHELLTKDDEAELGRRMDRARDAQRQLDAGVKEPARRAELEELVRQGEE 98 Query: 92 --RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 R I++NLRLVV IA+RY GL LLDLI+EGN+GLI AVEKFD +GF+FSTYATWW Sbjct: 99 AKRAFIQANLRLVVSIAKRYQASGLPLLDLIQEGNMGLIHAVEKFDWRKGFKFSTYATWW 158 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I R I N RTIRLP+H L+ R +L +L P+ E+A ++D P D + Sbjct: 159 IRQAITRGIANTGRTIRLPVHAGDSLSRVQRAQVQLEVRLGRAPTVRELAAEVDLPYDKL 218 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 LR S+ PL D + L D++ D + P D + + + + L L+ + Sbjct: 219 VEALRFRAEPVSLSEPLRDDGDAELGDVVEDSQSATPFDVAAEHLLPSEVSRLLAPLDGR 278 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +RE+L R+GL E TLE+VG LTRER+RQI+ + +LR Sbjct: 279 EREILRLRYGLDRGEPRTLEEVGEYFHLTRERIRQIEARAMSKLR 323 >UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacteria RepID=RPOD_LEPIC Length = 585 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 154/233 (66%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ ++++NLRLVV IA+RY NRG+ DLI+EGN+GLI+AV+KF+ ++G++FSTYATWW Sbjct: 347 AKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWW 406 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI +Q RTIR+P+H+++++N +R R + +P+ EEIAE+L PV V Sbjct: 407 IRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKV 466 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + + S++ P+G + + L D + D + P + + + I + L L A+ Sbjct: 467 KMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAR 526 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 +++V+ RFGL TLE+VG + +TRER+RQI+ + LRRLR +++ L Sbjct: 527 EQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKL 579 >UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilonproteobacteria RepID=RPOD_HELPJ Length = 681 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 156/234 (66%), Gaps = 4/234 (1%) Query: 85 RGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 RG + S R +M +SNLRLVV IA+R+ +RGL LDLI+EGN+GL++AV+KF+ E+GF+ Sbjct: 434 RGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFK 493 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 FSTYATWWI+Q I RAI +Q RTIR+PIH++ +N + R+ + EP E +AE+ Sbjct: 494 FSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEE 553 Query: 202 LDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 + +D V ++++ + S++TP+G D + D + D+ D +D+K I Sbjct: 554 VGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIES 613 Query: 262 WLFELNAKQREVLARRFGLLGYEA-ATLEDVGREIGLTRERVRQIQVEGLRRLR 314 L +LN +++ V+ RFGLL E+ TLE++G+E+ +TRERVRQI+ +++LR Sbjct: 614 VLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLR 667 >UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=Q7NB90_MYCGA Length = 644 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 109/295 (36%), Positives = 187/295 (63%), Gaps = 13/295 (4%) Query: 33 QEPSDNDLAEEELLSQGAT--QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVAS 90 Q+ S+ D ++L+S+GA+ +V D + +LG +G S +L EE+ A+ D + Sbjct: 332 QDLSEIDKNLDDLISKGASTKDKVEDNVKAFLGTLGSSKILNFGEEIQIAKLLGSTDPET 391 Query: 91 R----RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 146 R +++ SNLRLV IA++Y NRGL +DLI+EG++GL++A+ KF+ + G +FSTYA Sbjct: 392 REYAINQLVTSNLRLVTSIAKKYLNRGLDFVDLIQEGSIGLMKAISKFNYKLGNKFSTYA 451 Query: 147 TWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPV 206 TWWIRQ I RAI +Q RT+R+P+H+V+ +N ++T R L+ +L +P+ EE+ E + V Sbjct: 452 TWWIRQAITRAIADQARTVRIPVHMVETINKLIKTERMLTQQLGRDPTLEELTEAMGGQV 511 Query: 207 D-----DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 + V+ + +LN+ S+D P+G D E +D + D P++ T+ + + I + Sbjct: 512 NGFTPKKVADIKKLNQEPVSLDKPIGHDEESQFVDFVKDRDILKPDEYTEKLIVTEHINE 571 Query: 262 -WLFELNAKQREVLARRFGLLG-YEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++ L K+ +++ R+GL ++ TLE+VG++ +TRER+RQI+ + LR+L+ Sbjct: 572 LFINTLTKKEEQIIRMRYGLHPWHQQMTLEEVGQKFNVTRERIRQIESKALRKLK 626 >UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0N062_9BACT Length = 286 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 106/269 (39%), Positives = 164/269 (60%), Gaps = 1/269 (0%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 +++ T R + YL EIG L+T EEEV A+R +GD + ++ ++NLR VV + Sbjct: 6 ITKSITNRESASLDKYLQEIGKEELITVEEEVELAQRIKKGDQEALEKLTKANLRFVVSV 65 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A++Y N+GL+L DLI EGNLGLI+A EKFD RGF+F +YA WWIRQ+I +A+ Q+R + Sbjct: 66 AKQYQNQGLSLPDLINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIV 125 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 RLP++ V LN + + + PS EE+A +L+ P + V+ LR+ R SVD P Sbjct: 126 RLPLNQVGSLNKINKAFARFEQEHERTPSPEELANELELPKEKVTDTLRVAGRHVSVDAP 185 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 + +LLD+L + + ++ + + + L L ++R+++ FG +G Sbjct: 186 FADGEDNSLLDVLVNPDSPNADRGLINESLSTEVDRALETLTERERDIIKYFFG-IGCSE 244 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLR 314 TLE++G + LTRERVRQI+ + +RRLR Sbjct: 245 MTLEEIGEKFDLTRERVRQIKEKAIRRLR 273 >UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellular organisms RepID=RPOD_ANASP Length = 390 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 127/360 (35%), Positives = 202/360 (56%), Gaps = 47/360 (13%) Query: 1 MSQNTLKVHDL--NEDAEF---DENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVL 55 M+Q +++ DL ED + D+ ++ F E E + A+ +Q + Sbjct: 19 MNQPEIELDDLLIEEDEDLLLADDGDIDEFLEPQTDEDDAKSGKAAKSRRRTQSKKKHYT 78 Query: 56 -DATQLYLGEIGYSPLLTAEEEVYFARR-------------------------------- 82 D+ +LYL EIG LL A+EE+ AR+ Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQ 138 Query: 83 ----ALRGDVASRRR----MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 A R + RR M++SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EKF Sbjct: 139 LPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 198 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D E+G++FSTYATWWIRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS ++ +P+ Sbjct: 199 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 258 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 EEIA +++ ++ + + + + S++TP+G + + L D + + E PED + Sbjct: 259 EEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNL 317 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +++ + K L L+ ++R+VL R+GL TLE++G+ +TRER+RQI+ + LR+LR Sbjct: 318 LREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377 >UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogaceae RepID=A9BJC9_PETMO Length = 424 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 111/296 (37%), Positives = 174/296 (58%), Gaps = 18/296 (6%) Query: 23 EVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARR 82 E+F++ + VE E DN + D ++YL EI S LLT E ARR Sbjct: 128 EIFEDFSDVEVEMCDN-------------ISLQDPIKIYLKEISKSKLLTPSRERKLARR 174 Query: 83 ALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 142 A GD +R +I++NLRLV+ IA+RY GL LDLI+EGN+GL++AV KFD ++G++F Sbjct: 175 AQMGDKRAREELIKANLRLVISIAKRYVGHGLGFLDLIQEGNIGLMKAVAKFDWKKGYKF 234 Query: 143 STYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL 202 STY+ WWIRQ I RAI +Q RT+R+P+H+V+ +N R + + P EE++ + Sbjct: 235 STYSYWWIRQAITRAIADQGRTVRIPVHLVETINRMNRVVNKYIQENGEVPDLEELSVLM 294 Query: 203 DKPVDDVSRMLRLNERITSVDTPLGGD----SEKALLDILADEKENGPEDTTQDDDMKQS 258 DKPVD + +L + I S++ P+ D E +LD + D P++ + ++Q Sbjct: 295 DKPVDKMKEVLISAKNIFSLNAPISNDVDAEGESEVLDFI-DSDSPTPDEEGRKMIIRQK 353 Query: 259 IVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + + L+ K+ +L R+G + + TLE+VG +TRER+RQI+ + +R+L+ Sbjct: 354 MEMIIDTLSPKEAMILKMRYGFVDGKQKTLEEVGEFFNVTRERIRQIESKSIRKLK 409 >UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrelia RepID=RPOD_BORBU Length = 631 Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 114/312 (36%), Positives = 189/312 (60%), Gaps = 10/312 (3%) Query: 11 LNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPL 70 L D E +E+ EK+L +E D +E++ Q+ L+ ++Y E + Sbjct: 322 LGRDLTIAEKKIEI--EKSLKLKE----DAIKEQITEAQLAQKELERIEMYY-EYPTDKI 374 Query: 71 LTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRA 130 ++ EE+ ++ ++ ++ ++I++NLRLVV IA++Y NRGL DL++EGN+GLI+A Sbjct: 375 ISMSEEIAKGKQMMQ---HAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKA 431 Query: 131 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLD 190 VEKF+ +RGF+FSTYATWWIRQ I R+I +Q RTIR+P+H+++++N R R L L Sbjct: 432 VEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYLIQVLG 491 Query: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT 250 +P+ EE++++L + V + ++ S++TP+G + + L D + D+ P + T Sbjct: 492 KDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGEEEDSVLSDFIEDKAIKNPANHT 551 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310 ++ I L L +++EV+ RFGL + TLE+VG +TRER+RQI+ + L Sbjct: 552 SFVVLQDQIRAILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKAL 611 Query: 311 RRLREILQTQGL 322 RRL+ +TQ L Sbjct: 612 RRLKNPKKTQKL 623 >UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium caldarium RepID=Q39515_CYACA Length = 591 Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 106/235 (45%), Positives = 153/235 (65%), Gaps = 2/235 (0%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 R +R ++ RM+ +NLRLVV IA+RY NRG+AL DLI+EG++GLIR VEKFD ERGF Sbjct: 343 REHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAERGF 402 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 RFSTYATWWIRQ+I RAI + +R+IRLP+H+ +++ + + L +L PS EEI E Sbjct: 403 RFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEEEICE 462 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPL-GGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 + ++ + I S++TPL GD L + L +E E+ ++ D +++SI Sbjct: 463 SVGIDRAKYRLVMECSRNIVSLETPLRSGDDVHFLGESLIAPEERAEENCSR-DTLRESI 521 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 K L L+ ++REV+ RFGL TLE+VG +TRER+RQI+ + L++LR Sbjct: 522 EKVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKALKKLR 576 >UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia sp. CCGE1002 RepID=D1TN62_9BURK Length = 663 Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 153/224 (68%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++R MIE+NLRLV+ IA++Y NRG+ LDLI+EGN+GL++AV+KF+ RG++FSTYATWW Sbjct: 425 AKREMIEANLRLVISIAKKYVNRGMHFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWW 484 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 +RQ + R++ +Q RTIR+P+H+++ +N R +RE+ + E +A++++ P + V Sbjct: 485 VRQAVTRSLADQARTIRIPVHMMESINKLNRISREILQQTGREAHPAVLAQRMEVPEEKV 544 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 ML++ + S++TP+G +++ L D++ D P D +++ +I L L+ + Sbjct: 545 RAMLKIGRQPLSLETPVGDEADTTLSDVIEDPMATSPADAAVQANLRAAINTALDALSPR 604 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 + +VL RFG+ TLE++G++ LTRER+RQI+ + +R+L Sbjct: 605 EAKVLRMRFGIDTASDCTLEELGKQFDLTRERIRQIESKAMRKL 648 >UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLA1_SYNFM Length = 433 Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 97/226 (42%), Positives = 153/226 (67%), Gaps = 1/226 (0%) Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 ++++ M+++NLRLV+ IA+RY RG++ DLI+EGNLGL++AV +FD +G RFSTYATW Sbjct: 196 SAKQEMVKANLRLVLSIAKRYRGRGMSFDDLIQEGNLGLLKAVGRFDHTKGNRFSTYATW 255 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 W+RQ+I R I ++TRTIRLP+H ++ N++ + EL +L EPS +EIAE+ P+D Sbjct: 256 WVRQSIIRGIYDKTRTIRLPVHFIELKNLFFKVFYELLKELGREPSPQEIAERAKLPLDK 315 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V +L L + S++TP+G D E+ L D + DE+ P + D ++ + L L Sbjct: 316 VQMVLTLAAQPISLETPIGED-EQRLGDFIEDERAASPMEECSDRELAEITRSLLSSLQP 374 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++ ++L RFG+ G A TLE +G+ +++ER+RQI+ + LR+LR Sbjct: 375 REEKILRLRFGIDGQPAETLEKIGKTFKVSKERIRQIEKKALRKLR 420 >UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=Q3AWQ6_SYNS9 Length = 451 Score = 196 bits (498), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 102/238 (42%), Positives = 161/238 (67%), Gaps = 2/238 (0%) Query: 77 VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 + F RR + G A + +M++SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EKFD Sbjct: 203 IRFRRRLMLGRRA-KEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 261 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 E+G++FSTYATWWIRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS + +P+ E Sbjct: 262 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEE 321 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 EIAE ++ ++ + + + + S++TP+G + + L D + + EN PE + ++ Sbjct: 322 EIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLR 380 Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + + L L+ ++R+VL R+GL TLE++G+ +TRER+RQI+ + LR+LR Sbjct: 381 EDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 438 >UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular organisms RepID=RPSB_ANASP Length = 332 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 167/299 (55%), Gaps = 41/299 (13%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRA-------------------------------L 84 DA +YL +IG PLL+ E+E++FA++ L Sbjct: 23 DAVSIYLHKIGRVPLLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQL 82 Query: 85 RGDV---------ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 + DV ++++MI++NLRLVV IA++Y R L LDLI+EG LGL R VEKFD Sbjct: 83 KEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFD 142 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 P G++FSTYA WWIRQ I RAI Q+RTIRLPIH+ +LN RELS KL + Sbjct: 143 PTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGV 202 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 EIA+ L+ + L+L + S+D +G + + L D+L D+ + PE + + + Sbjct: 203 TEIAQALNLEPSQIREYLQLVRQPVSLDMRIGFEQDTQLQDLLKDDGMS-PERYAERELL 261 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 Q I L +L +Q+EVL RFGL G TL + + +G++RERVRQ++ + L LR Sbjct: 262 YQDIHNLLAKLTPQQKEVLILRFGLAGGCELTLVQISQRMGISRERVRQVEKQALTLLR 320 >UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasmataceae RepID=B1VAH4_PHYAS Length = 476 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 114/321 (35%), Positives = 181/321 (56%), Gaps = 42/321 (13%) Query: 32 EQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEE------VYFARRALR 85 E +P D+ ++E + + ++ D+ ++YL EIG PLL+ EEE V+ + A + Sbjct: 146 EIDPEDDKFSKENITKINSDIKIDDSVRMYLKEIGRIPLLSKEEEQKKTFAVFLGKEAKK 205 Query: 86 GDVASRRR-------------------------MIESNLRLVVKIARRYGNRGLALLDLI 120 R + ++ESN RLVV IA+RY RG+ LDLI Sbjct: 206 KLTKFRNQEIDLSDQEVKQLESQIIQANQAKDVLVESNYRLVVSIAKRYIGRGVLFLDLI 265 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 +EGN+GL+RAV+KFD ++G R STYAT+W+ Q + RAI +Q RTIR+P+HIV+ +N Sbjct: 266 QEGNMGLMRAVDKFDYQKGLRLSTYATYWVIQGVTRAIADQARTIRIPVHIVETINKMSL 325 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLG--GDSEKALLDIL 238 R+L+ +L +P+ EE+AE+++ P D + + + ++ S++ P + E +L D + Sbjct: 326 CTRKLTQELKKKPTIEELAEKMNIPADKLRSIQYIEKKPISLEVPPAENKEDETSLGDFI 385 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFE-----LNAKQREVLARRFGLLGYEAATLEDVGR 293 +D P + MK+ K L E L ++ +VL R+G L + TLE++G Sbjct: 386 SDPNVLSPHEYM----MKEVTQKLLDEVLENTLTEREEKVLKMRYGFLDGKVYTLEEIGN 441 Query: 294 EIGLTRERVRQIQVEGLRRLR 314 G+TRER+RQI+ + LRRLR Sbjct: 442 LFGVTRERIRQIESKALRRLR 462 >UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes RepID=Q2SRY7_MYCCT Length = 505 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 108/323 (33%), Positives = 183/323 (56%), Gaps = 60/323 (18%) Query: 53 RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA----SRRRMIESNLRLVVKIARR 108 ++ D + Y +IG +P+LT ++E+ +A+ A+ D R ++IESNL+LV+ +AR+ Sbjct: 166 KIQDIIKTYFYKIGQAPILTKDQEIMYAKMAVSDDPEDVKEGRNKLIESNLKLVISVARK 225 Query: 109 YGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP 168 + NRGL DLIEEGN+GL++AV+KF+ E+GF+FSTYATWWI Q I RAI +Q RTIR+P Sbjct: 226 HLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWISQAITRAIADQARTIRIP 285 Query: 169 IHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPV--DDVSRMLRLNERITSVDTPL 226 +H+V+ +N R R+L+ +L EP+AEEIA ++ + + D V + +L+ S++ P Sbjct: 286 VHMVETINKLARVERQLTQELGREPNAEEIANRVGEGITSDKVIEIKKLSIEPVSLEKPF 345 Query: 227 GGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFG------- 279 G + + D + D+ P + T+ + +K+ + K ++ ++ +V+ R+G Sbjct: 346 GDEDDTHFGDFVEDKDMVSPSEYTEKEILKEVMDKVFEDMPPREEKVIRMRYGIVPTRLR 405 Query: 280 ----------------------------------------------LLGYEAA-TLEDVG 292 L Y++A TLE+VG Sbjct: 406 TLLRLAQECNDTNAKELKQAIEELDIHLDTPIEKVRKFNNEIINNNLAKYDSARTLEEVG 465 Query: 293 REIGLTRERVRQIQVEGLRRLRE 315 +E+ +TRER+RQI+ + +R+L++ Sbjct: 466 KELNVTRERIRQIEAKTIRKLKQ 488 >UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular organisms RepID=B7K1V2_CYAP8 Length = 379 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 176/299 (58%), Gaps = 41/299 (13%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFAR---------------------------------- 81 D+ ++YL EIG LL AEEE+ AR Sbjct: 69 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINM 128 Query: 82 ------RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 R L ++ +M+ SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EKFD Sbjct: 129 EWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 188 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 E+G++FSTYATWWIRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS ++ +P+ Sbjct: 189 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTE 248 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 EEIA +++ ++ + + + + S++TP+G + + L D + + EN PED + + Sbjct: 249 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGEN-PEDEVSKNLL 307 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++ + L L+ ++R+VL R+GL TLE++G+ +TRER+RQI+ + LR+LR Sbjct: 308 REDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 366 >UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece RepID=B7KCK0_CYAP7 Length = 295 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 112/283 (39%), Positives = 175/283 (61%), Gaps = 25/283 (8%) Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRAL--------------------RGDVASRRRM 94 LD + YL EIG PLL +EEEV A + +G +A +R+M Sbjct: 6 LDPVRSYLQEIGRIPLLNSEEEVQLATKVQNMLPLLEKENLTAAEKKIVEQGQIA-KRKM 64 Query: 95 IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 154 I++NLRLVV IA+RY RGL+LLDLI+EG+LGLIRAVEKFDP +G++FSTYA WW+RQ I Sbjct: 65 IQANLRLVVSIAKRYQRRGLSLLDLIQEGSLGLIRAVEKFDPSKGYKFSTYAYWWVRQAI 124 Query: 155 ERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR 214 RA+ ++RTIRLPIH+ + LN ++ REL+ +L +P+ +E+A++++ PV+ + + Sbjct: 125 TRALAEKSRTIRLPIHMTENLNQLKKSVRELTGELGRKPNEQEVAQRMEIPVEKLREIRH 184 Query: 215 LNERI--TSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQRE 272 R S++ L D++ L ++L DE + P + ++ I L +L +QRE Sbjct: 185 AVYRTDAKSLNITL-DDNQTELGEVLPDET-SLPIEFVSQWELVTKINDLLEDLPPRQRE 242 Query: 273 VLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 ++ RFGL + + +++GR+ G++ ER RQ+ +R L++ Sbjct: 243 IITLRFGLQTGKRMSYKEIGRQCGISHERARQLLNRAMRTLKQ 285 >UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKU3_THEYD Length = 427 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 155/233 (66%), Gaps = 1/233 (0%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ +MIESNL+LVV IA++Y RGL L DLI+EGN+GL++AVEKF+ ++GF+FSTY+TWW Sbjct: 189 AKNKMIESNLKLVVSIAKKYTGRGLNLEDLIQEGNIGLMKAVEKFEYKKGFKFSTYSTWW 248 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ+I RAI ++TIR+P+H++ + + REL ++EP EEI+ L+ P D + Sbjct: 249 IRQSINRAIAEHSKTIRIPVHVIDNICKINKIYRELYQNSENEPDIEEISLNLNIPSDKI 308 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + L +++ S+D L D + L + + D P + DD+K I K L+ + Sbjct: 309 ADFLAISKEPVSIDMSLRDD-DSLLKEFIEDMNSPNPYEEALHDDLKHLIEKVFSLLSKR 367 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++E+L RR+G+ + +L++VG+E ++RER+RQI++ +R+L+ + + + L Sbjct: 368 EKEILMRRYGINEEKPKSLDEVGKEFSVSRERIRQIELRAMRKLKRLCRLKWL 420 >UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 Tax=Propionibacterium acnes RepID=Q6A8Y3_PROAC Length = 312 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 159/288 (55%), Gaps = 28/288 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA-------------------------- 89 DA LYL I +PLL A EEV ARR G A Sbjct: 17 DAVGLYLDGIARTPLLNAAEEVALARRIEAGVFARAILEGHAETTSDTTTKELHQIAADG 76 Query: 90 --SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 + + +NLRLVV +AR+YG + LLDL++EGN GLIRAVEKFD +GF+FSTYAT Sbjct: 77 DEALAHFVRANLRLVVSVARKYGRSQMPLLDLVQEGNTGLIRAVEKFDYAKGFKFSTYAT 136 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WW+RQ I R I Q R +RLP+H+ +++N R L +L EP EIA++L+ + Sbjct: 137 WWVRQAISRGIAQQGRIVRLPVHVAEQVNQVSAARRNLERQLGREPETFEIADELEITEE 196 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V ++R S+D P+ D + +L D++A E GP+D D + + + L +L+ Sbjct: 197 RVIELIRFGRDHVSLDAPVEDDGDTSLGDLIARETSPGPDDIVLDAEDRSRLEGLLDDLD 256 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 + +V+ RR+GL+ A L D+G+ G+T ERVRQI+ L +R+ Sbjct: 257 ERSADVVRRRYGLVDGRQAKLADIGKVWGITAERVRQIERAALASMRQ 304 >UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellular organisms RepID=RPOD_SYNY3 Length = 425 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 97/225 (43%), Positives = 157/225 (69%), Gaps = 1/225 (0%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ +M++SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EKFD E+G++FSTYATWW Sbjct: 189 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 248 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS ++ +P+ EEIAE+++ ++ + Sbjct: 249 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKL 308 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + + + S++TP+G + + L D + + E PED + +++ + L L+ + Sbjct: 309 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLSPR 367 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +R+VL R+GL TLE++G+ +TRER+RQI+ + LR+LR Sbjct: 368 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 412 >UniRef50_Q1PZV7 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZV7_9BACT Length = 256 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 106/250 (42%), Positives = 161/250 (64%), Gaps = 2/250 (0%) Query: 70 LLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIR 129 +LT EEE+ AR+ +GD +R ++I++NLRLVV IA+ + NRG + LDLIEEGNLGLIR Sbjct: 1 MLTFEEELEIARKVAKGDAEAREKLIKANLRLVVSIAKEFVNRGFSFLDLIEEGNLGLIR 60 Query: 130 AVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKL 189 AVE FD G RFSTYATWWI+Q I RAI N+ R IR+P ++++ ++ + L K Sbjct: 61 AVEDFDITTGNRFSTYATWWIKQAIRRAIANKARIIRIPSYMLQRISQMKHASSGLLKKH 120 Query: 190 DHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL--GGDSEKALLDILADEKENGPE 247 + PS +EIA ++D +V + + +TS+D PL G D AL DI + K PE Sbjct: 121 ERSPSEQEIAAEIDITAQNVKNIELSLQSMTSLDAPLVSGADIIWALSDITPNGKTLPPE 180 Query: 248 DTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307 + ++ K+++ K L L+ + V+ R+GL+ E+ TLED+ + + ++RERVRQI+ Sbjct: 181 EGLEETYEKETLKKLLDTLDKRAATVITMRYGLVDGESRTLEDISKILKISRERVRQIEK 240 Query: 308 EGLRRLREIL 317 E +++L ++ Sbjct: 241 ETIQKLHYLI 250 >UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellular organisms RepID=RPOD1_SYNE7 Length = 399 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 112/299 (37%), Positives = 177/299 (59%), Gaps = 41/299 (13%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRA-------------------LRGDV-------- 88 D+ +LYL EIG LL A+EE+ AR+ L D Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148 Query: 89 -------------ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 ++ +M++SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EKFD Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 E+G++FSTYATWWIRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS ++ +P+ Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 EEIA +++ ++ + + + + S++TP+G + + L D + + E PED + + Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVAKNLL 327 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++ + L L+ ++R+VL R+GL TLE++G+ +TRER+RQI+ + LR+LR Sbjct: 328 REDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386 >UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=7 Tax=Planctomycetaceae RepID=D2R6R0_9PLAN Length = 544 Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 153/234 (65%) Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 A++R++ NLRLVV IA++Y NRGL+ LDLI+EGN GL+RAV+K++ RGF+FSTYATW Sbjct: 302 AAKRQLSSGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGFKFSTYATW 361 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RAI +Q RTIR+P+H++ L+ ++L +L EP+ EE+ +D P+++ Sbjct: 362 WIRQAITRAIADQARTIRIPVHMIDVLSKLRNVQKKLLQELGREPTTEEVTALVDLPLEE 421 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V R+L + S+D P+G + + + + D + P + +++ I L L Sbjct: 422 VKRVLDIGRHPVSLDRPVGDSEDSSFGEFIEDTASDNPVLCATNGILRERIDGLLKTLTW 481 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++RE++ R+GL TLE+VGR +TRERVRQI+ + +R+L+ ++++ L Sbjct: 482 REREIIRLRYGLCDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQL 535 >UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacteria RepID=B7K407_CYAP8 Length = 328 Score = 194 bits (492), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 114/300 (38%), Positives = 165/300 (55%), Gaps = 43/300 (14%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALR------------------------------ 85 D + YL EIG PLLT E+E+ + ++ R Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNL 77 Query: 86 -----------GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 G+ A +R+MIE+NLRLVV IA++Y R + LDLI+EG+LGL R VEKF Sbjct: 78 KEPELKKTIEQGNRA-KRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKF 136 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 DP +G++FSTYA WWIRQ I RAI Q RTIRLPIHI ++LN +T RELS KL + Sbjct: 137 DPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSAT 196 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 EIA L+ + L + + S+D +G + + L ++L D E P+ + Sbjct: 197 PAEIAAVLEIEPSQIRECLSMARQPISLDVRVGDNQDTELSELLEDH-EASPDQYITQEL 255 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++Q + + EL +QR VL RFGL + +L +G+++ ++RERVRQ++ + L +LR Sbjct: 256 LRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQALAQLR 315 >UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia RepID=C0R506_WOLWR Length = 650 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 154/227 (67%), Gaps = 3/227 (1%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ MI++NLRLVV IA++Y RGL LLDLI+EGN+GL++AV+KFD +RG++FSTY TWW Sbjct: 413 AKQEMIKANLRLVVSIAKKYSKRGLDLLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWW 472 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 +RQ+I RAI Q++ +R+P+H+V+ ++ R R+++H++ EP+ EE++ +L P++ + Sbjct: 473 VRQSITRAIPEQSKVVRIPVHMVEIISKINRALRKMTHEMGREPTLEELSVELTMPLERI 532 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 +++++ S++ P G D D + D++ + PED D++ L L K Sbjct: 533 RKVMKIARDPVSLEAPTGKDDSSTFGDCIEDKRVSRPEDAAILADLRGITTNVLATLTPK 592 Query: 270 QREVLARRFGLLGYEAA--TLEDVGREIGLTRERVRQIQVEGLRRLR 314 + +L RFG LG + TLE+VG+ +TRER+RQI+ + LR+L+ Sbjct: 593 EERILRMRFG-LGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 638 >UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 Tax=Actinomycetales RepID=HRDC_STRCO Length = 339 Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 114/285 (40%), Positives = 164/285 (57%), Gaps = 31/285 (10%) Query: 61 YLGEIGYSPLLTAEEEVYFARR-------------ALRGDVAS---RRR----------- 93 YL +IG +PLLTAE+EV A R A G+ A RRR Sbjct: 42 YLTQIGATPLLTAEDEVRLATRIEAGVRAREELETADTGEPAPTPRRRRTLEETVHDGQE 101 Query: 94 ----MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 M+ +NLRLVV +A+R+ +RGL LLD+I+EGNLGLIRAVEKFD +GF+FSTYATWW Sbjct: 102 AKDHMVRANLRLVVSMAKRHAHRGLPLLDVIQEGNLGLIRAVEKFDHTKGFKFSTYATWW 161 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ IER + RT+RLP+H+V++L + R+L LD EP+ EE+A + VD V Sbjct: 162 IRQAIERGLATHARTVRLPVHVVEQLQKLAKVERKLRAGLDREPTTEEVAAESGIDVDKV 221 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + R+ S+DTP+ + + D++ D + + + + + + + L + Sbjct: 222 VWLRRVGRDAVSLDTPVDETGDTVVGDLIPDTEVLRAPEVAEFQALAAELREAVGTLAPR 281 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + +L+ R+GL TL+ V + +GLTRERVRQ++ E L LR Sbjct: 282 ESLILSLRYGLHDGRPRTLQQVAQHVGLTRERVRQLEKESLAHLR 326 >UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily n=8 Tax=Planctomycetaceae RepID=D2R4L7_9PLAN Length = 320 Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 110/261 (42%), Positives = 164/261 (62%), Gaps = 6/261 (2%) Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 YL EI + LL+A +E A GDV +R RM+ +NLRLVV IAR Y +GL+L DLI Sbjct: 46 YLREINETALLSARDERELAAAIADGDVRARDRMVRANLRLVVNIARGYTGKGLSLQDLI 105 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 EEGNLGL+RAVE FDP G RFSTYA++WI+Q+I+RA++N +TIR+P ++V+ L+ + R Sbjct: 106 EEGNLGLLRAVEGFDPAVGTRFSTYASYWIKQSIKRALINSAKTIRIPAYMVELLSKWRR 165 Query: 181 TARELSHKLDHEPSAEEIAEQL---DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 L+ +L P+ EE+A L K + + + +R+ D G S L +I Sbjct: 166 ATARLTEELGRGPTPEEVARVLGLAKKKLPIIKKAIRIYNSTPQTDQSEAGWS---LGEI 222 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 + DE+ PED + D+ + +++ L +++++ VL RFGL TL+++G +GL Sbjct: 223 VMDERLKNPEDELVEQDVLKHVMEMLHTMDSREATVLRMRFGLGDTTPHTLKEIGESLGL 282 Query: 298 TRERVRQIQVEGLRRLREILQ 318 TRERVRQI+ E L +L + L+ Sbjct: 283 TRERVRQIETEALGKLADGLK 303 >UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WS32_CYAA5 Length = 416 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 101/236 (42%), Positives = 159/236 (67%), Gaps = 2/236 (0%) Query: 79 FARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPER 138 F RR G A + +M+ SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EKFD E+ Sbjct: 170 FKRRLYLGRKA-KDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEK 228 Query: 139 GFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEI 198 G++FSTYATWWIRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS ++ +P+ EEI Sbjct: 229 GYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEI 288 Query: 199 AEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQS 258 A +++ ++ + + + + S++TP+G + + L D + + E PED + +++ Sbjct: 289 ATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLRED 347 Query: 259 IVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + L L+ ++R+VL R+GL TLE++G+ +TRER+RQI+ + LR+LR Sbjct: 348 LENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403 >UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RNE4_9CLOT Length = 298 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 106/261 (40%), Positives = 161/261 (61%), Gaps = 5/261 (1%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY--GNRG 113 D+ Q YL + G PLLT EEE+ A G +R++MI SNLRLV+ A++Y + Sbjct: 27 DSVQWYLKQAGVGPLLTKEEEIELAYLIQEGSDEARQKMISSNLRLVINQAKKYVTYTQS 86 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 L LLDLI+EGNLGLI+AVEK++PE GFRFSTYA+WWI+Q I RAI + IRLP+H + Sbjct: 87 LTLLDLIQEGNLGLIKAVEKYNPELGFRFSTYASWWIKQAITRAISVLDKAIRLPVHFCE 146 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 ++ R E+ + D + E++ + + ++L S++TP+G E Sbjct: 147 DIQKVKRATHEIMQQNDI-VTPEKLKDITGFSEGKIEKILMNMNHTISLETPVG--EEAT 203 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 L D + D E+ ++ M++ I + + L +++ +LA RFGL G TLE+VG+ Sbjct: 204 LGDFVEDTLTPSIEEQAMENAMQREISRQMECLRPREQTILALRFGLNGQNPHTLEEVGK 263 Query: 294 EIGLTRERVRQIQVEGLRRLR 314 ++G+TRER+RQI+++ LR+LR Sbjct: 264 QMGVTRERIRQIEMKALRKLR 284 >UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actinobacteria (class) RepID=RPOD_MYCBO Length = 528 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/298 (38%), Positives = 172/298 (57%), Gaps = 31/298 (10%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARR--------------ALRGD---VASRRRM---- 94 D+ + YL +IG LL AEEEV A+R + RG+ A RR M Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWIC 285 Query: 95 ----------IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFST 144 +E+NLRLVV +A+RY RG+A LDLI+EGNLGLIRAVEKFD +G++FST Sbjct: 286 RDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 345 Query: 145 YATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDK 204 YATWWIRQ I RA+ +Q RTIR+P+H+V+ +N R REL L EP+ EE+A+++D Sbjct: 346 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 405 Query: 205 PVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLF 264 + V + + S+D +G + + L D + D + D ++ + L Sbjct: 406 TPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLD 465 Query: 265 ELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 L+ ++ V+ RFGL + TL+++G+ G+TRER+RQI+ + + +LR ++Q L Sbjct: 466 TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVL 523 >UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderia cepacia complex RepID=A4JT57_BURVG Length = 628 Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 143/239 (59%), Gaps = 3/239 (1%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +R + ++NLRLVV IA+RY +RGL DLI+EGN+GL++A++++D RGFRFSTYATWW Sbjct: 391 ARMGLFDANLRLVVSIAKRYPDRGLPFADLIQEGNIGLLKAIDRYDHRRGFRFSTYATWW 450 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I A+ + RTIR+P H V +N R ARE + + E+A Q+ +P+D V Sbjct: 451 IRQAITHALADLGRTIRVPTHTVDAINKLTRIAREHRQRSGAAATPHELAVQMGEPLDKV 510 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 ++ + + S D P+ + E +D+ D PED ++ +I + L A+ Sbjct: 511 RDLMSIVKEPMSADAPVSPEGEMTFVDVAPDVSTPSPEDAAGAAQLRDTIAAMIGRLPAR 570 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALF 328 + VL R+GL E +L D+GR++ L+ ERVRQI+ L RLR + GL++ F Sbjct: 571 EATVLRLRYGLHADEGCSLRDIGRQLNLSAERVRQIEASALARLR---ASDGLDVLRAF 626 >UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3J9H0_NITOC Length = 579 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 109/291 (37%), Positives = 178/291 (61%), Gaps = 5/291 (1%) Query: 37 DNDLAEEELLSQG-ATQ-RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRR-- 92 D+ LA + QG TQ + L A Q L ++ L +E +R +R ++R Sbjct: 283 DDLLAHSRIDRQGLQTQAKTLRAAQAVLLQVEVEAGLPLDELKAIHQRLVRSQFQAQRAK 342 Query: 93 -RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 151 +M+E+NLRLVV +A++Y NRGL LDLI+EGN+GL++AV+KFD RG++FSTYA WWIR Sbjct: 343 AQMVEANLRLVVSVAKKYRNRGLTFLDLIQEGNIGLMKAVDKFDYHRGYKFSTYAHWWIR 402 Query: 152 QTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSR 211 Q I RAI +Q+RTIR+P+H++++L+ R + +L + E EE+AE+L + R Sbjct: 403 QAITRAIDDQSRTIRIPVHVMEKLSKLNRASYQLRQEKGREGRPEELAERLALSEQQIHR 462 Query: 212 MLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQR 271 M + ++ S++TPLG D + L +++ DE+ P + ++ + L L+ ++ Sbjct: 463 MHEIAKQPISLETPLGKDEDSQLGELMEDEQVPNPMEVAITAGLQTGAQQLLAALSPREA 522 Query: 272 EVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 +V+A RFG+ TL +V ++ L+RER+RQI+ + L +LR + ++ L Sbjct: 523 QVVAMRFGIGMDTDHTLGEVAQQFDLSRERIRQIEAQALGKLRRLGHSKAL 573 >UniRef50_A6F9J5 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70region 1.2 n=3 Tax=Moritella sp. PE36 RepID=A6F9J5_9GAMM Length = 284 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 113/267 (42%), Positives = 160/267 (59%), Gaps = 4/267 (1%) Query: 56 DATQLYLGEIGYSP-LLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 +A +Y+ ++ S LLT EEE A + GD +R+RMI+SNLRLV+ IA+RY + L Sbjct: 8 NALDVYMYQVNQSSKLLTKEEEYETAMASNEGDEKARQRMIQSNLRLVINIAKRYQHTSL 67 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 L+D+I+EGN GLI AVEKFD +GFRFSTYA WWI+ IER IMNQ+RTIR+PIHI K Sbjct: 68 PLVDIIQEGNTGLIHAVEKFDATKGFRFSTYAVWWIKNNIERFIMNQSRTIRVPIHIGKV 127 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG--DSEK 232 L+TARE L +AE L+ V+ +L S+D + DS Sbjct: 128 YKRILKTAREQELDLQCNHDVMTLAEFLEMQYAQVNEVLSYYFNEASLDKTIVTDRDSST 187 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 AL+D+L D P D +D D + + L L+ + R+++ RFGL + TL +G Sbjct: 188 ALVDMLEDYSICKPNDELEDADTLCYLNEVLGHLSERDRKIIELRFGLGEEDPLTLHVIG 247 Query: 293 REIGLTRERVRQIQVEGLRRLR-EILQ 318 + ++RER+RQI L++++ E+LQ Sbjct: 248 ERLSMSRERIRQIINLSLQKIQPELLQ 274 >UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria RepID=C4LJ07_CORK4 Length = 621 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 116/301 (38%), Positives = 168/301 (55%), Gaps = 37/301 (12%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRR----------------------- 92 D+ + YL +IG LL AE+EV A+R G A+ + Sbjct: 319 DSVRAYLKQIGKVALLNAEQEVSLAQRIEAGLYANHKLEELKASNTKLSPAQSRDLRSIA 378 Query: 93 --------RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFST 144 ++E+NLRLVV +A+RY RG+A LDLI+EGNLGLIRAVEKFD +G++FST Sbjct: 379 HDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 438 Query: 145 YATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDK 204 YATWWIRQ I R++ +Q RTIR+P+H+V+ +N R REL L EP+ EE+A ++D Sbjct: 439 YATWWIRQAITRSMADQARTIRIPVHMVEVINKLGRIQRELLQDLSREPTPEELAREMDI 498 Query: 205 PVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDT---TQDDDMKQSIVK 261 D V + + S+D +G + + L D + D + D T D Q ++K Sbjct: 499 TEDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLK 558 Query: 262 WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 L E A V+ RFGL TL+++G+ G+TRER+RQI+ + + +LR ++Q Sbjct: 559 TLTEREAG---VVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 615 Query: 322 L 322 L Sbjct: 616 L 616 >UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobacteria RepID=RPSC_ANASP Length = 416 Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 97/226 (42%), Positives = 150/226 (66%), Gaps = 1/226 (0%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 S+ MI++NLRLVV +A++Y NRGL LLDL++EG LGL RAVEKFDP +G+RFSTYA WW Sbjct: 177 SKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 236 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI +RTIRLP+HI ++LN + R+++ + P+ E++A +LD V Sbjct: 237 IRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQV 296 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 +L R S++T +G D + L ++L + PE+ + +++ + L +L ++ Sbjct: 297 REVLLRVPRSVSLETKVGKDKDTELGELLETDGVT-PEEMLMRESLQRDLQHLLADLTSR 355 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 +R+V+ RFGL +L ++GR + L+RERVRQI+ + L++LR+ Sbjct: 356 ERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQ 401 >UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacteria RepID=Q7U3K5_SYNPX Length = 467 Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 105/233 (45%), Positives = 144/233 (61%), Gaps = 1/233 (0%) Query: 83 ALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 142 ALR ++ MI++NLRLVV +A++Y RG+ LLDL++EG LGL RAVEKFDP RGFRF Sbjct: 220 ALRNGRRAKDHMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRGFRF 279 Query: 143 STYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL 202 STYA WWIRQ + RAI Q+RTIRLP+H+ ++LN R +E++ S ++A L Sbjct: 280 STYAYWWIRQGMTRAIATQSRTIRLPVHVTEKLNRIKRAQQEIATNEGRIASIADLARAL 339 Query: 203 DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKW 262 D V + L R S+DT +G D + L D++ D K PE T D++ + Sbjct: 340 KLSEDTVRQTLARVPRSVSLDTRVGRDQDTQLGDLIEDGKAT-PEQTLTHDELHNDLEHL 398 Query: 263 LFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 L EL +++ VL RRFGL TL +G + L+RERVRQI+ L +LR+ Sbjct: 399 LDELTSREAAVLRRRFGLEDDTPQTLAQIGEALKLSRERVRQIETRALLKLRQ 451 >UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0R030_BRAHW Length = 587 Score = 187 bits (476), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 152/225 (67%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ ++++NLRLV+ IA++Y NRGL DL++EGN+GLI+AV+KF+ ++G++FSTYATWW Sbjct: 349 AKDHIVKANLRLVIAIAKKYVNRGLHFFDLVQEGNIGLIKAVDKFEYKKGYKFSTYATWW 408 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I R+I +Q RTIR+P+H+++++N R R+ + EPS +EIA+ L P V Sbjct: 409 IRQAITRSISDQARTIRVPVHMIEQINKVQRVLRQYMQQHGREPSIQEIAKALSWPESRV 468 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + + + S++ P+G + + L +++ D++ P++ T +++ I L L + Sbjct: 469 KSVRNVAKDPVSLNAPIGDEEDTILGELIEDKEFESPQNITTFKILRKQIDSILDSLPDR 528 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +++V+ RFGL+ + TLE+VG +TRER+RQI+ + +RRLR Sbjct: 529 EQKVIRMRFGLVDGYSHTLEEVGYVFKVTRERIRQIEAKAIRRLR 573 >UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema RepID=Q73P62_TREDE Length = 286 Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 98/271 (36%), Positives = 162/271 (59%), Gaps = 1/271 (0%) Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 +++ YL EI PLLTAEEE+ +A+ A +GD ++ ++ SNLR VV +A++Y N+GL Sbjct: 13 MNSLATYLKEINQIPLLTAEEEIKYAKLAEKGDEDAKNMLVNSNLRFVVNVAKKYQNQGL 72 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 L+DLI EGN+GL+ A E+FD +G++F +YA WWI+Q+I +AI ++R IRLP++ E Sbjct: 73 PLMDLISEGNIGLMNAAERFDVSKGYKFISYAVWWIKQSILKAICEKSRMIRLPLNRANE 132 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD-SEKA 233 L + +E+ + EIA L+ V ++ S+D P+ + + Sbjct: 133 LVQIEKAKKEIDFSGNETKELNEIAGILNMDNSMVHTIMNAAREPISIDAPVFDEPGSSS 192 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 + D L DE PED D ++ + + L L+ ++ E++ RFGL GY +L++VG Sbjct: 193 VNDFLQDETHQMPEDYAMDMSLRDEVNELLKNLDDREAEIIRYRFGLGGYAPLSLKEVGL 252 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQGLNI 324 LT+ER+RQI+ + L++L++ + Q L + Sbjct: 253 IFNLTKERIRQIEKKALQQLKKPAEKQKLAV 283 >UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycetales RepID=A6CE36_9PLAN Length = 588 Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 154/241 (63%), Gaps = 2/241 (0%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++++ NLRLVV IA++Y NRGL+ LDLI+EGN GL+R VEK++ RG++FSTYATWW Sbjct: 320 AKQQLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEYRRGYKFSTYATWW 379 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RA+ + RTIR+P+H+ + ++ + ++ + EP+ EE+A+ + V++ Sbjct: 380 IRQAITRAVADHARTIRIPVHMFQSISTLKARSEQIRQETGREPTMEELADSVGLGVEET 439 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 R+++ + S+DTP+G + + D L D E+ P D + +K I L L + Sbjct: 440 ERIMKTWKHPISLDTPVGESEDSSFGDFLEDGHESSPADAAMREMLKDKIEHVLKSLTYR 499 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN--IEAL 327 +RE++ R+GL + TLE+ GR +TRER+RQI+ + LR+L+ ++ L ++A+ Sbjct: 500 EREIIRLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKALRKLQHQTRSAHLRGFVDAI 559 Query: 328 F 328 F Sbjct: 560 F 560 >UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9N7_SPHTD Length = 359 Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 109/286 (38%), Positives = 163/286 (56%), Gaps = 24/286 (8%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRM----------------- 94 Q DA Y ++G LLT EE+ ++R A+R + +R+R+ Sbjct: 64 QATSDAVYRYFRDVGGHQLLTHREEIEYSR-AVRAGLEARKRLEAGEDSEELHQIIERAK 122 Query: 95 ------IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 I NLRLVV IA++Y GL L+DLI+EGN+GL+ AVE++DPE G+RFSTYAT+ Sbjct: 123 AAREKLIRHNLRLVVSIAKKYRTSGLPLIDLIQEGNIGLMTAVERYDPELGYRFSTYATF 182 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RA+ NQ+RTIR+P+H+ ++ RT +L + +E+A+ LD V+ Sbjct: 183 WIRQAIGRAVANQSRTIRVPVHMHDLISKVRRTEAQLEQLHGRPATDQELAQALDLDVER 242 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 + + R +S+D P+G D E + D+L D + D ++ I + L L+ Sbjct: 243 IEQARSAIPRTSSLDKPIGEDGESTIGDLLPDPASDEVVDQAVTSAIRDQIRRSLESLSE 302 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++R VL RFGL G + TL ++ G++RERVRQI+ E L +LR Sbjct: 303 RERGVLTLRFGLGGQQPQTLAEIAEYYGISRERVRQIEKEALAKLR 348 >UniRef50_B7VSN6 RNA polymerase sigma factor n=7 Tax=Vibrio RepID=B7VSN6_VIBSL Length = 298 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 106/266 (39%), Positives = 159/266 (59%), Gaps = 6/266 (2%) Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNR---GLALL 117 YL +I LL+ E+E+Y+A+ GD +R MIESNLRLVVKIA+ Y R LL Sbjct: 32 YLKDIVGIDLLSREDELYYAKLNRAGDKQARDIMIESNLRLVVKIAKSYLKRKGNNFTLL 91 Query: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177 DLIEEGN+GLI+A++K+DPE G+RFSTYA WWIR+ IE A+MN+ RT+RLP H+ KE+N Sbjct: 92 DLIEEGNIGLIKAIDKYDPEPGYRFSTYAVWWIRENIEAALMNKGRTVRLPAHVCKEINS 151 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 ++S K+ E S E++ + V +++ L+ I V T +G +LD Sbjct: 152 LASKKLDVSKKMRKEISISELSNSSGVKAERVDQLVALSGFI-DVTTTVGISHAPLVLDQ 210 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR--EI 295 E P+ +D ++ + + L K ++VL RFG + TL +VG+ ++ Sbjct: 211 CESEYIPDPQQDCEDQSFTHALEQIINTLPPKLQKVLIHRFGFFDNKVKTLSEVGQMLDV 270 Query: 296 GLTRERVRQIQVEGLRRLREILQTQG 321 ++ ERVRQ+Q E + R+++ L+ G Sbjct: 271 NVSNERVRQMQKEAVERIQKRLKFDG 296 >UniRef50_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DV14_SULAA Length = 282 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 107/261 (40%), Positives = 156/261 (59%), Gaps = 16/261 (6%) Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 L QLY+ ++G P+LT EEE A RA +GD + ++++E NLR VV IA+ + G+ Sbjct: 8 LTTLQLYMQQMGKYPMLTPEEERELAIRAKKGDKEALKKLVEGNLRFVVNIAKNFMGWGV 67 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH---- 170 L DLI GNLGLI A ++FDP++ +F +YA WWIRQ I + I QT +R+PI Sbjct: 68 PLTDLIAAGNLGLIEAAKRFDPDKNVKFISYAVWWIRQAIMQTIFQQTGAVRIPIKESLF 127 Query: 171 IVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL--GG 228 I K N Y +L L EP+ EEIA++L V V L + + S+D PL GG Sbjct: 128 ISKVKNAY----EKLKESLGREPTEEEIAKELKTSVKKVKNALAIVRQPISLDMPLGEGG 183 Query: 229 DSEKALLDILADEKENGPEDTTQD---DDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 + + LLDIL+ + G ED +D +K+ + L L+ ++RE++ R+GL G E Sbjct: 184 EEDFTLLDILS---KKGTEDVEKDLVESTLKEEFERLLNVLDEREREIIKLRYGLEGLEP 240 Query: 286 ATLEDVGREIGLTRERVRQIQ 306 TLE+VG +G++RERVRQ++ Sbjct: 241 KTLEEVGEMLGISRERVRQLE 261 >UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria RepID=Q601Y8_MYCH2 Length = 676 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 108/276 (39%), Positives = 167/276 (60%), Gaps = 21/276 (7%) Query: 56 DATQLYLGEIG-YSPLLTAEEEVYFARR-ALRGDVASRRR--MIESNLRLVVKIARRYGN 111 D + Y+ IG Y LLTAEEE A++ ++G + + R +I+ NLRLVV A+RY N Sbjct: 393 DMIKWYMRWIGKYGKLLTAEEERELAKKMKIKGRIGKKARDTLIKRNLRLVVNSAKRYKN 452 Query: 112 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 171 RGL +DLI EGNLG+I+AV K+D RGF+FSTYATWWIRQ I RA+ +Q R IR+P+H+ Sbjct: 453 RGLGFIDLISEGNLGIIKAVAKYDYTRGFKFSTYATWWIRQAITRAVADQARLIRIPVHM 512 Query: 172 VKELNVYLRTARELSHKLDHEPSAEEIAEQL--DKPVDDVSRMLRLNERITSVDTPLGGD 229 V+ +N + REL + P+AEEI+E+L + D + + ++N S+D +G + Sbjct: 513 VETINKINKVERELQQEKGLNPTAEEISERLGGEFSPDKIRYIKKINIDPISLDKAIGKE 572 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE-----LNAKQREVLARRFGL---- 280 + + D + DE P D +++ K L E L+ +R+ + RR+G+ Sbjct: 573 EDSSFSDFIKDENMISPVDYA----IREEKAKVLLEMIDSTLDYDERDFIKRRYGVGTND 628 Query: 281 --LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + Y+A + E++ +T+ERVRQI+ + L++LR Sbjct: 629 EGIPYQAHSFEELAAMRRVTKERVRQIEAKILKKLR 664 >UniRef50_A8ZPW9 RNA polymerase sigma-70 factor, putative n=10 Tax=Acaryochloris marina MBIC11017 RepID=A8ZPW9_ACAM1 Length = 274 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 97/260 (37%), Positives = 167/260 (64%), Gaps = 2/260 (0%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D+ YL EI P+L+ EEE+ AR+ G++ +++R+IE NLRLVV IA+++ NRGL Sbjct: 6 DSLHFYLKEIARYPILSHEEEILLARQVNAGNLRAKQRLIECNLRLVVSIAKKHQNRGLP 65 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 L DLI+EG++GL AV+KFD +G RFSTYA WWIRQ + A+ ++R I LP + + + Sbjct: 66 LQDLIQEGSIGLSNAVDKFDLAQGCRFSTYAYWWIRQGVTAALRAKSRPIYLPQYQWEMI 125 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 + + REL+ +L EPS E+A+ + +SR L L ++++S+D P+G + LL Sbjct: 126 SKIKKHFRELNQQLGREPSLSELAKATNLKPKTISRTLHLFQKVSSLDQPVGHQQKDTLL 185 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D++A E + P + + + + + + L+ +++ VL++RFGL + ++ ++G +I Sbjct: 186 DLMAGEDQ--PTLYLESLQLDEQLSQVMAHLDKREQFVLSQRFGLEDDQPKSMREIGEQI 243 Query: 296 GLTRERVRQIQVEGLRRLRE 315 GL+RE +R I + +++L++ Sbjct: 244 GLSREGIRLILNKIMKKLQK 263 >UniRef50_B1ZRN1 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZRN1_OPITP Length = 347 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 104/257 (40%), Positives = 148/257 (57%), Gaps = 1/257 (0%) Query: 59 QLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 Q+YL +IG +PLLTA EE A R RGD +R MI +NLRLVV+IA+ Y GL L D Sbjct: 36 QIYLQDIGQTPLLTAREEFALAERVRRGDAGARDHMIRANLRLVVRIAKDYAQYGLPLAD 95 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI EGN+GLI AV++FDP G + STYA WWIRQ I RA + R IRLP+H++ + Sbjct: 96 LISEGNVGLIHAVDRFDPRIGGKLSTYAAWWIRQAIRRAFAHHARAIRLPVHMLDRIARL 155 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSE-KALLDI 237 R LS + E + +E+A +L PV+ ++ + S+D +G SE + L + Sbjct: 156 RRAQASLSEQFGREATTDELAAELQAPVEKIALWKSAGDAPFSLDAAVGTGSESRRLSET 215 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 + DE+ +D + + + L+ ++ +L RFGL G E TL V G+ Sbjct: 216 IRDERAPTAFTQLRDATTARDLRAIIATLDVREATILRLRFGLDGDEPQTLHAVSLRFGI 275 Query: 298 TRERVRQIQVEGLRRLR 314 TRERVRQ++ L+ +R Sbjct: 276 TRERVRQLERRALQNVR 292 >UniRef50_Q2JMC5 RNA polymerase sigma factor n=2 Tax=Synechococcus RepID=Q2JMC5_SYNJB Length = 319 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 113/286 (39%), Positives = 160/286 (55%), Gaps = 38/286 (13%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRA-------------------------------- 83 DA +L IG LLTAEEE+ A + Sbjct: 9 DAVGRFLKTIGRYSLLTAEEELRLAHQVQRMVTLLEQRQPHESVEGWSQRLGIPLAELQQ 68 Query: 84 -LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 142 LR A+++RM+E NLRLVV IA+RY NRGL LDLI+EG +GL RAVEKFDP RG++F Sbjct: 69 ILRQGEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQEGTIGLTRAVEKFDPTRGYKF 128 Query: 143 STYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL 202 STYATWWIRQ++ R I N+ R IRLP H+ ++++ R RELS + P AEE+ + L Sbjct: 129 STYATWWIRQSVNRGIQNKGRMIRLPAHMYEKVSQVKRRYRELSAERGSRPQAEEVFDSL 188 Query: 203 DKPVDDVSRML--RLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 D + D R L R + S++ +G + L + DE +N P + ++ + Sbjct: 189 D--IGDNYRELITRHMAEMRSLNVGVGDEDGTELQHFIPDE-DNDPVEHLTQLARREEVR 245 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQ 306 + +L+ ++R+V+ R+GL G TL ++G IGL+RERVRQI+ Sbjct: 246 ALVGQLSERERQVIVARYGLDGSRGLTLREIGEHIGLSRERVRQIE 291 >UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacteria RepID=C6X620_FLAB3 Length = 294 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/269 (36%), Positives = 163/269 (60%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 +++ T R + YL EIG L+TA+EEV A++ GD + ++I++NLR VV + Sbjct: 12 ITKQVTNRETASLDKYLQEIGKVDLITADEEVDLAQKIRAGDRVALEKLIKANLRFVVSV 71 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 +++Y N+GL+L DLI EGNLGL++A +++D RGF+F +YA WWIRQ+I +A+ Q+R + Sbjct: 72 SKQYQNQGLSLPDLINEGNLGLMKAAKRYDETRGFKFISYAVWWIRQSILQALAEQSRIV 131 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 RLP++ + +N + L + + PS EE+AE LD DD+ ++ + R S+D P Sbjct: 132 RLPLNKIGSINKINKAYAHLEQENERPPSPEELAEVLDMSEDDIKESMKNSGRHLSMDAP 191 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 L + L D+L + P+ + ++ I + L L ++ +++ FGL G Sbjct: 192 LVEGEDSNLYDVLRSGESPSPDKELMLESLQIEIERALQTLTPREADLVRLYFGLNGKHP 251 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLR 314 TLE++G LTRERVRQI+ + ++RL+ Sbjct: 252 MTLEEIGETFDLTRERVRQIKEKAIKRLK 280 >UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella RepID=B0U099_FRAP2 Length = 578 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/228 (40%), Positives = 152/228 (66%), Gaps = 4/228 (1%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++ MIE+NLRLVV A++Y NRGL LD+I+EGN+GL++AV+KFD +GF+FSTYATWW Sbjct: 340 AKKEMIEANLRLVVSEAKKYTNRGLHFLDIIQEGNIGLMKAVDKFDYRKGFKFSTYATWW 399 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL-DKPVDD 208 IRQ I R+I +Q RTIR+P+H+++ +N R R++ + E + EEI E + D Sbjct: 400 IRQAITRSIADQARTIRVPVHMIETINKVNRIKRQILQEKGREATEEEIIEYTPNMTKDK 459 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 + ++L ++ S+++P+G D + + D + D+ P + ++++++I K L + Sbjct: 460 LKKILNISHTPISMESPIGDDEDSTVGDFIEDKNNYSPIEAANLENLREAI-KELIDTGL 518 Query: 269 KQRE--VLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +RE VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ Sbjct: 519 TEREAKVLMMRFGIGMNTDHTLEEVGKQFNVTRERIRQIEAKALRKLK 566 >UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomycetales RepID=D1A523_THECD Length = 360 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 114/289 (39%), Positives = 157/289 (54%), Gaps = 29/289 (10%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGD---------------------------- 87 D YL IG + LL A+EEV A+ A+ G Sbjct: 17 DLVGAYLDRIGRTHLLDAQEEVDLAK-AIEGGLYAEHLLEEDRVPPGVTRQELEELVAAG 75 Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 V +++R +E+NLRLVV IAR+Y L L+DLI+EGNLGL+RAVEKFD RGF+FSTYAT Sbjct: 76 VRAKQRFVEANLRLVVSIARKYPTDALPLIDLIQEGNLGLMRAVEKFDYRRGFKFSTYAT 135 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ+I R + + RTIRLP+H+ +EL+ R R+L +L EP+ EE+AE L VD Sbjct: 136 WWIRQSIGRGLSHTARTIRLPVHVEEELSRLRRAERQLGRELGREPTREELAEALGAAVD 195 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V +LR S+D + E + D+L D + PE D + + L L Sbjct: 196 HVDELLRWRRDPASLDAAVDDAGETPMGDLLEDPEGVSPEAEVLALDDIAGLARLLDRLP 255 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 ++ +L RFG+ + + +G GL+ RVRQI LRRLR++ Sbjct: 256 ERESAILRARFGIEDGQPLSYAQIGARYGLSHNRVRQITDRSLRRLRQL 304 >UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GEJ9_PHATR Length = 329 Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 104/257 (40%), Positives = 152/257 (59%), Gaps = 18/257 (7%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 RR+LR A + ESN+RLVV IA+RY +RGL+ DL +EG LGL RA EKFDPERGF Sbjct: 72 RRSLRAKAA----LTESNIRLVVSIAKRYQHRGLSFQDLAQEGILGLTRACEKFDPERGF 127 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 RFSTYA+WWI+Q+I RAI +Q RTIRLP+HI ++N + REL +L + EEI E Sbjct: 128 RFSTYASWWIKQSIMRAIADQGRTIRLPVHIHDQINALRKVERELKAELGRDARLEEITE 187 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPL-------------GGDSEKALLDILADEKENGPE 247 + + + + R++++ S++ L G D L D++ D E P Sbjct: 188 KSTLTAEKIEFLNRVSQQDVSMEQELRTSKSKGSSAGLGGPDGGLTLGDVMGD-PEAQPA 246 Query: 248 DTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307 + +K I + + LN++++ V+ RFGL +A TLE++GR +TRER+RQI+ Sbjct: 247 EEASYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIES 306 Query: 308 EGLRRLREILQTQGLNI 324 L +LR+ + + Sbjct: 307 RALHKLRQPYRNHAVKC 323 >UniRef50_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6A4_9BACT Length = 491 Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/235 (39%), Positives = 147/235 (62%) Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 V +R+R E NLRLVV IA++Y RG+A DLI+EGN GL+RAV+K+D GF+FSTYAT Sbjct: 248 VMARKRFSEGNLRLVVSIAKKYRKRGMAFHDLIQEGNTGLMRAVDKYDYRMGFKFSTYAT 307 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWI+Q I RA + RTIR+P+H++ +N A+ + E IA + P+ Sbjct: 308 WWIKQAIIRATEEKVRTIRIPVHMMDVINKSTYVAKAGQGSSAEKIQLEAIARDTNTPLP 367 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 ++ R+L++ + S++TP+G D E D + D+K + P Q +K+ I K L L+ Sbjct: 368 EIYRLLQITSQPISLETPIGSDGETMFEDFIQDKKIDAPIFLAQRSLLKEQIQKVLDTLS 427 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++RE++ RFG+ +LE++G+ +TRER+RQI+ LR+L+ ++++ L Sbjct: 428 YREREIIKLRFGISDGYTHSLEEIGKRFNITRERIRQIEAIALRKLQHPVRSRKL 482 >UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0QYD2_BRAHW Length = 309 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 170/305 (55%), Gaps = 31/305 (10%) Query: 45 LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARR--ALRGDVA------------- 89 +L + Q +YL +IG LT EEE+ +R R D A Sbjct: 1 MLKKDINQEYKGPVSVYLKQIGEIRRLTKEEELDLWQRLEVCRNDRALLENNDDEESLKK 60 Query: 90 ----------SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 + ++++SNLRLV+ IA+RY N G+ +D+I+EGN+GLI AV++F+ ++G Sbjct: 61 IEEIDKEIDSIQHKLVKSNLRLVISIAKRYYNSGVPFIDIIDEGNIGLIEAVKRFEYKKG 120 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 F+FSTY WWI+Q+I + I ++ IR P+HI + + ++T++ L+ KL +P+ +EI+ Sbjct: 121 FKFSTYGVWWIKQSIVKEISSKRHIIRFPMHIARLIKKSIQTSKTLTQKLGRDPTIDEIS 180 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 +++ +S ++ + SVD+ + I+ D+ P D ++ ++ Sbjct: 181 KEMKIDRKTLSYIMIFTQDTASVDSFFRNSDNNDMTSIIEDKNFPSPHQKAFMDSLRDTL 240 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 + L L+ K+R V+ R+GL G EA TLED G+E+ +TRERVRQIQ++ +++L Sbjct: 241 TEALKCLDEKERTVIISRYGLYGKEAKTLEDTGKELNITRERVRQIQIKAIKKL------ 294 Query: 320 QGLNI 324 GLN+ Sbjct: 295 AGLNL 299 >UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B6H5_METEA Length = 531 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 150/234 (64%), Gaps = 1/234 (0%) Query: 82 RALRGDV-ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 RA GD+ +R ++ SNLRLV +A++Y NR L +LDL++EGN+GL+RA+EKFD RG+ Sbjct: 282 RAAHGDLRKARDTLVTSNLRLVFSVAKKYTNRPLPILDLVQEGNIGLMRAIEKFDYRRGW 341 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYA WWI+Q+I R+I + RTIRLP+H+ ++ RTA L +L PS E+A+ Sbjct: 342 KFSTYAIWWIKQSISRSIADHGRTIRLPVHLHEKAAKIDRTAARLRAELGRPPSPPELAQ 401 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 LD V V R++ ++ S+D P+G D + D++ DEK P +K ++ Sbjct: 402 ALDIDVRQVERLMNMSRETVSLDLPVGEDGDVRFGDLVEDEKAPDPVGLADLAKLKDAVS 461 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + +L +++ ++ RFG+ + TLE++G+ ++RERVRQ++ + ++RLR Sbjct: 462 DAVGDLPEREQTIIRMRFGIGYADQMTLEEIGQHFRISRERVRQVESKAIQRLR 515 >UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycoplasma RepID=RPOD_MYCPN Length = 499 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 106/298 (35%), Positives = 177/298 (59%), Gaps = 13/298 (4%) Query: 43 EELLSQGATQR--VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRR----RMIE 96 EEL ++ + R V D + +LG + S +L E E A+ D SR+ +++ Sbjct: 195 EELTTKNISNRDKVDDNVRFFLGSLDSSKMLDFESEQRIAKVLNSTDEESRKYAINQLVT 254 Query: 97 SNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIER 156 SNLRLVV IA+++ RGL DLI+EGNLGL++A+ KF+ G +FSTYATWWI+Q I R Sbjct: 255 SNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNKFSTYATWWIKQAITR 314 Query: 157 AIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDK-----PVDDVSR 211 AI +Q RT+R+P+H+V+ +N + R L+ +L EP+AEE+AE++ V ++ Sbjct: 315 AIADQARTVRIPVHMVETINRLAKAERALNQELGREPTAEELAEKMGGQAEGFTVKKIAE 374 Query: 212 MLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQR 271 + RL+ S+D +G D E D + D P++ T+ + I + L ++Q Sbjct: 375 IKRLSLDPVSLDKTVGHDEESQFGDFVRDTDAQMPDEFTESRSNYEKIDELLNNCLSEQE 434 Query: 272 EVLAR-RFGLLGY-EAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEAL 327 E++ R R G+ Y E TL++V ++I + RE++RQI+ + +R+LR+ ++ +++ + Sbjct: 435 ELIVRMRIGMPPYNETKTLDEVSQKIKIPREKIRQIETKAIRKLRQAVRNNHMSLSFM 492 >UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML80_9BACT Length = 414 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 142/222 (63%), Gaps = 1/222 (0%) Query: 94 MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 153 +++ NLRLVV IA+R+ RG+ LDLI+EGN+GL+RA E+F +GF+FSTYATWW+RQ Sbjct: 183 LVQHNLRLVVDIAKRFTGRGMGFLDLIQEGNIGLMRAAERFQYRKGFKFSTYATWWVRQG 242 Query: 154 IERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRML 213 I RA+ +Q+RTIR+P+H + ++ + L+ KL EPS EEIA L + V Sbjct: 243 ILRAVADQSRTIRVPVHTTEAWQRMIKISHRLAQKLGREPSNEEIALALAVKPERVQHTT 302 Query: 214 RLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 + S D P D E L D L D+ + P++ Q++ M+ + + L L ++ +V Sbjct: 303 QAFLEPISFDQP-NADGETFLGDCLPDDHASPPDEHLQEEQMRSQLHRLLRVLTPREEQV 361 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 + RFG+ ++ TLE+VG+ + +TRER+RQI+V +++LRE Sbjct: 362 IRLRFGIGNGQSRTLEEVGKLLNVTRERIRQIEVLAMKKLRE 403 >UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacterium RepID=C6JJT6_FUSVA Length = 275 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 105/262 (40%), Positives = 162/262 (61%), Gaps = 8/262 (3%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D LYL +I +L +EE+ +A GD S+ ++I SNLRLVV IA+ Y N+GL+ Sbjct: 7 DLISLYLADIRKYKILDKDEELNLLIKAKAGDEESKNQLILSNLRLVVNIAKGYINKGLS 66 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 +DLI EGNLGLI A+EKFD +GFRFSTYA WWI+Q+I +A++ + R IR+P + L Sbjct: 67 FIDLISEGNLGLIYAIEKFDITKGFRFSTYAVWWIKQSISKAVIVKGREIRIPSYKYDLL 126 Query: 176 NVYLRTARELSHKLDHE---PSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232 N + R + +L E P EEIA +L+ VD + ++ + S+ T +G D Sbjct: 127 N---KVNRYVMSRLKDEGNYPPVEEIAAELNIDVDKIQDIIMDFQDPMSLSTQIGDDI-- 181 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 L D LA +++ E+ ++ ++ + + +L +++E+L R+GL GYE TLE++G Sbjct: 182 YLEDTLAQQEDFSMEEEIFNEMGRKQVRDMVNQLEEREKEILKLRYGLDGYEIHTLEEIG 241 Query: 293 REIGLTRERVRQIQVEGLRRLR 314 + +TRERVRQI+ + L++LR Sbjct: 242 NTLNITRERVRQIEKKTLQKLR 263 >UniRef50_C6JPD1 RNA polymerase sigma factor n=2 Tax=Fusobacterium RepID=C6JPD1_FUSVA Length = 260 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 101/268 (37%), Positives = 166/268 (61%), Gaps = 12/268 (4%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG 113 +LD ++ Y+ +I PLLT +EE A +A GD ++ +++ SNLRLV+ IAR+Y N G Sbjct: 1 MLDISE-YIKDISTYPLLTPKEEREIAVKARSGDREAQEKLVTSNLRLVISIARKYTNMG 59 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 + +LDLI+EGN+GLIRAVEK++P++ RFSTY+T+WI+Q+I R I + IR P ++ Sbjct: 60 IPILDLIQEGNMGLIRAVEKYEPDKNIRFSTYSTFWIKQSILRYITSSRGLIRFPSYVYD 119 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 ++ + ++ +K H PS +EI LD + R + + E+ + + G+ + Sbjct: 120 GISRMKKYVQDYKNKNSHCPSIDEICRSLDMKKKEAERYIDVLEKGNGIGNEMYGEMVEY 179 Query: 234 LLDILADEKENGPEDTTQDDDMKQS----IVKWLFELNAKQREVLARRFGLLGYEAATLE 289 I+ D DT +D+ + +S ++K + +L ++REVL R+GLL + TL Sbjct: 180 CSSIIYD-------DTFEDEVIAKSSNIDLMKKVNKLPPREREVLIYRYGLLDEKVLTLG 232 Query: 290 DVGREIGLTRERVRQIQVEGLRRLREIL 317 ++G+ + LT+ER+RQIQ+E + RLRE L Sbjct: 233 EIGQRMNLTKERIRQIQLEAIDRLREKL 260 >UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SG50_RHOSR Length = 520 Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 153/234 (65%), Gaps = 2/234 (0%) Query: 82 RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 R R ++RR +E+NLRLVV IARRY RGL LLDL++EGNLGLIRAVEKFD + GF+ Sbjct: 275 RVCRDGQHAKRRFLEANLRLVVSIARRYQGRGLDLLDLVQEGNLGLIRAVEKFDYKTGFK 334 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 FSTYATWWIRQ I RA+ +Q+R IR+P+H+V++++ + L+ + EP+ E+A Sbjct: 335 FSTYATWWIRQAITRALADQSRVIRIPVHMVEQIDQLGKERARLTKETGREPTPSELATA 394 Query: 202 LDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 LD ++ + + + ++R+ S+D L ++E LD D+ E+ + +++ Sbjct: 395 LDTTIEHIGDLEKYDQRVLSLDV-LTDNAEHDGLD-FEDDLAVVAEEVAERRRFYETLES 452 Query: 262 WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 L L+ + +V+ R+GL G + TL+++G+ G+TRER+RQI+ + L+ ++E Sbjct: 453 VLSPLSERDAQVIRLRYGLTGSDPYTLDEIGKIYGVTRERIRQIESKLLKAMKE 506 >UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L491_THERP Length = 334 Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 108/295 (36%), Positives = 171/295 (57%), Gaps = 28/295 (9%) Query: 43 EELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRR--------- 93 ++L+ Q A DA Y E+G LLT +EE+ ++R A+R +A+R+R Sbjct: 34 DDLIDQAAN----DAVYRYFREVGGHRLLTHQEEIEYSR-AVRAGLAARKRIEAGEDTPE 88 Query: 94 --------------MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 +I NLRLVV IA+RY + L L+DLI+EGN+GL+ AVE++DPE G Sbjct: 89 LRELVRKGQEAREKLIRHNLRLVVSIAKRYRSSELPLIDLIQEGNIGLMTAVERYDPELG 148 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 +RFSTYAT+WIRQ I RA+ N +RTIR+P+H+ + R ++ + + EE+A Sbjct: 149 YRFSTYATFWIRQAIGRAVANLSRTIRVPVHMHDLIAKIRRAEAQIEQQKGRPATNEELA 208 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 E L V + + R +S+D P+G D E ++ D+L D + + + + +++ I Sbjct: 209 ELLGIDVARIEQARTQIPRTSSLDKPIGEDGESSIGDLLPDPRSDDVVEEALTNAIREQI 268 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + L +L ++R VL RFGL G + TL ++ + ++RERVRQ++ E L++LR Sbjct: 269 RRSLEQLTERERTVLVMRFGLDGEQPRTLAEIADALKISRERVRQVEKEALQKLR 323 >UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD77_THET1 Length = 596 Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 88/195 (45%), Positives = 133/195 (68%), Gaps = 1/195 (0%) Query: 86 GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTY 145 GD+A R+R+IE+NLRLVV IA++Y RG+ LLDLI+EGN+GLI+AVEKF ++G++FSTY Sbjct: 252 GDIA-RKRLIEANLRLVVSIAKKYTGRGITLLDLIQEGNIGLIKAVEKFRHQKGYKFSTY 310 Query: 146 ATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKP 205 ATWWIRQ I RAI +Q RTIR+P+H+ + +N + R L+ +L EP+ +EIA L P Sbjct: 311 ATWWIRQAITRAIADQARTIRIPVHMGEAINKIAQARRRLTQELGREPTEQEIANYLGIP 370 Query: 206 VDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE 265 V+ + + ++++ S++ P+G + + +L D + D K P D ++ I + L Sbjct: 371 VEKIREVQKISQEPISLENPVGEEEDTSLGDFIQDHKAPAPMDAASQSLLRDQIDQVLKH 430 Query: 266 LNAKQREVLARRFGL 280 L+ ++R VL RFGL Sbjct: 431 LSERERGVLLMRFGL 445 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 43/63 (68%) Query: 252 DDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLR 311 D +++++ + + A +R+++ RFGL + TLE+VGR G+TRER+RQI+ + LR Sbjct: 521 DQKLREALASVMLHVPAPERDMMRFRFGLDIGQPRTLEEVGRAFGVTRERIRQIESKALR 580 Query: 312 RLR 314 +LR Sbjct: 581 KLR 583 >UniRef50_B2VA41 RNA polymerase sigma factor n=2 Tax=Hydrogenothermaceae RepID=B2VA41_SULSY Length = 281 Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 98/259 (37%), Positives = 155/259 (59%), Gaps = 2/259 (0%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY 109 A Q L QLY+ ++G P+L+ EEE A RA +GD + ++++E NLR VV IA+ + Sbjct: 2 AEQDELTTLQLYMQQMGKHPMLSPEEEKELAIRAKQGDKEALKKLVEGNLRFVVSIAKNF 61 Query: 110 GNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 G+ L DLI GNLGLI A ++FDP++ +F +YA WWIRQ I + I QT +R+P+ Sbjct: 62 MGWGVPLTDLIAAGNLGLIEAAKRFDPDKNVKFISYAVWWIRQAIMQTIFQQTGAVRIPV 121 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL--G 227 + T +L +L EP+ EEIA++L+ V V L + S+D PL G Sbjct: 122 KESLFIAKVKETYEKLKEELGREPTEEEIAKRLNTSVKKVKNALSIVRLPISLDMPLGEG 181 Query: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 G+ + LLD+L+ + E ++ + + + L L+ +++E++ R+GL G E T Sbjct: 182 GEEDFTLLDVLSKKGTEDIEKELIEETIHKELESMLDVLDEREKEIIKMRYGLDGEEPKT 241 Query: 288 LEDVGREIGLTRERVRQIQ 306 LE+VG ++G++RERVRQ++ Sbjct: 242 LEEVGEKLGISRERVRQLE 260 >UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteobacteria RepID=Q6AK94_DESPS Length = 447 Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 146/221 (66%), Gaps = 1/221 (0%) Query: 94 MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 153 MI +NLRLVV IA+RY ++GL L DLI+EGNLGL+RAV +FD +G +FSTYA+WWIRQ Sbjct: 215 MIRANLRLVVSIAKRYMHQGLTLADLIQEGNLGLMRAVFRFDYTKGNKFSTYASWWIRQA 274 Query: 154 IERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRML 213 I RAI+++TRTIRLP+H ++ + + + L +L EP+ EI++ + P+D + +L Sbjct: 275 ITRAILDKTRTIRLPVHFLELRSQFFKAFYALFKELGREPTPLEISKTTNLPMDKILSIL 334 Query: 214 RLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 + S++TP+ GD + L D L +++ P + Q+ ++ + + L L+ ++ ++ Sbjct: 335 EASREPISLETPV-GDDDSTLGDFLENQESQSPYEAVQNRELSGRVTEILSTLSDREEKI 393 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + RFG+ TLE++G+ ++RER+RQI+ + L RLR Sbjct: 394 IRLRFGIGEKAEYTLEEIGKRFNVSRERIRQIEKKALNRLR 434 >UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E8_9CHLO Length = 595 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 104/309 (33%), Positives = 172/309 (55%), Gaps = 44/309 (14%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFARR---------------------------- 82 T++ D+ + YL +IG LLT EEV A+R Sbjct: 265 TKKQTDSMKTYLKDIGTVSLLTGAEEVELAKRIQDLMYLNSVCERLEEENGGKEPTRFMW 324 Query: 83 ALRGDVA-------------SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIR 129 A+ ++ ++ MI++NLRLVV IA+RY N+ ++ DLI+EG +GLIR Sbjct: 325 AIECNITEQELERRLEEGKRAKNAMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIR 384 Query: 130 AVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKL 189 EKFD +RG++FSTYA WWIRQ + R+I +Q+RTIRLP+H+ + ++ + R++ KL Sbjct: 385 GAEKFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQMVLKL 444 Query: 190 DHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL---GGDSEKALLDILADEKENGP 246 +P+ EE+A+ ++ V+ + ++ + + S+ + G+ ++ + D L D+ P Sbjct: 445 GRDPTHEELADAMEMTVEKIKQIKKASLVPISLSQTVNNSNGEDKRTVEDTLIDDYTEHP 504 Query: 247 EDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQ 306 E T +K+ + L LN ++R+VL R+GL TLE++G +TRER+RQI+ Sbjct: 505 EGETGKVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIE 564 Query: 307 VEGLRRLRE 315 + LR+LR+ Sbjct: 565 AKALRKLRQ 573 >UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea sitchensis RepID=B8LLW6_PICSI Length = 592 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 148/234 (63%), Gaps = 6/234 (2%) Query: 93 RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQ 152 ++I NLRLV+ +A+ Y NRGL+L DLI+ G++GL+R+ EKFD RGF+FSTYA WWIRQ Sbjct: 357 KIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWIRQ 416 Query: 153 TIERAIMNQTRTIRLPIHIVKELNVYLRTAREL---SHKLDHEPSAEEIAEQLDKPVDDV 209 +I +A+ Q+RTIRLP+HIV+ + +RTA L HK D P+ EE+AE + + Sbjct: 417 SITKALTEQSRTIRLPVHIVESMT-RIRTAWRLLYQEHKRD--PTKEEVAEVAGISMTRL 473 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + R + TS+D +G D ++ +I+AD E + K+ + + L L A+ Sbjct: 474 RHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTAR 533 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 +++V+ R+GL +L +VG L+RERVRQI+++ +R+LR+ +TQ L Sbjct: 534 EKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLK 587 >UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A692_GEMAT Length = 295 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 100/256 (39%), Positives = 156/256 (60%), Gaps = 2/256 (0%) Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 YL E+ PLL A EE+ A++ GD + + +++ NLR V+ +A++Y NRGL L+DLI Sbjct: 29 YLYEVSTYPLLKAAEEIELAKKIRAGDQDALQELVKRNLRFVISVAKKYQNRGLPLIDLI 88 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 EGN+GL+ A KFDP++G +F +YA WWIRQ I ++ Q RT+R+P++ +L+ ++ Sbjct: 89 GEGNVGLLTAARKFDPDQGVKFISYAVWWIRQAILSSLARQGRTVRVPLNRTADLSRIIK 148 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLD-ILA 239 + L KL EPS EE+A+ VD V + LN +D P+ D +++L++ +A Sbjct: 149 ASEILRQKLRREPSPEELAQVTGLSVDVVQSLAALNTGDVRLDAPMDPDGDRSLIERFVA 208 Query: 240 DEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTR 299 DE + E+ + + I + L L + +VL FGL G TLE++G +G+TR Sbjct: 209 DEMPDT-EEEAMNRFLTDEIEQALSTLPPRDAKVLRLYFGLEGGREHTLEEIGSMLGVTR 267 Query: 300 ERVRQIQVEGLRRLRE 315 ERVRQ++ L+RLRE Sbjct: 268 ERVRQLRDRALKRLRE 283 >UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 Tax=Actinomycetales RepID=HRDD_STRVF Length = 332 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 112/299 (37%), Positives = 159/299 (53%), Gaps = 28/299 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEV---------YFARRALRGDVASRRR------------- 93 D +YL EI +PLL A +EV FA++ L G+ SR Sbjct: 34 DLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFAQQVLDGEEESRTDATREELQALVDAG 93 Query: 94 ------MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 I SNLRLVV +ARRY GL LLDLI+EGN GL+RAVEKFD +GF+FSTYAT Sbjct: 94 ERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYAT 153 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I R+I +Q+RTIRLP+H+V+EL R RE + + +P E+A +L + Sbjct: 154 WWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEVAAELGSTPE 213 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V +L S++ + E D+L D PE + + + + L+ Sbjct: 214 RVIDVLDWARDPVSLNMAVDDAGETQFGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLD 273 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEA 326 + ++ R+G+ TL +VG+E GLTRER+RQI+ L L+++ + G + A Sbjct: 274 QRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDTGFDAAA 332 >UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=A5IY54_MYCAP Length = 509 Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 97/272 (35%), Positives = 168/272 (61%), Gaps = 13/272 (4%) Query: 56 DATQLYLGEIG-YSPLLTAEEEVYFARRALRGDVASRR---RMIESNLRLVVKIARRYGN 111 D + Y+ IG Y LL EEE A +G +R ++I+ NLRLV+ A++Y N Sbjct: 224 DIVKWYMRWIGKYGKLLQPEEEFELATEMDKGGFKGKRARDKLIKRNLRLVINNAKKYKN 283 Query: 112 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 171 RGL+ +DLI EGN G+I+AV+K++ +GF+FSTYATWWIRQ I RA+ +Q+RT+R+P+H+ Sbjct: 284 RGLSFIDLISEGNSGIIKAVQKYNVNKGFKFSTYATWWIRQAITRAVADQSRTVRVPVHM 343 Query: 172 VKELNVYLRTARELSHKLDHEPSAEEIAEQL--DKPVDDVSRMLRLNERITSVDTPLGGD 229 V+ +N + REL + +P+ EEIA++ D + V + ++N S+D +G + Sbjct: 344 VETINKITKIERELQQENGVDPTDEEIAQRYGNDFTAEKVRHIRKINIDPISLDKQIGKE 403 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE-LNAKQREVLARRFGL------LG 282 ++ + D + DE P D +++ +++ L + L+A + E++ +R+G+ Sbjct: 404 NDSSFSDFVKDESVVNPVDYASHEELVETLNAILKDTLDADEYELICKRYGVGFDNNGEK 463 Query: 283 YEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 Y+ +LE++ E +++ER+RQI+ + LR+L+ Sbjct: 464 YKVFSLEELALERNVSKERIRQIENKILRKLK 495 >UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13K37_BURXL Length = 628 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 144/225 (64%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +RR MIE+NLRLVV +A++Y G+ LLDL++EGN+GL++AV++F+ RGF+FSTYATWW Sbjct: 390 ARRAMIEANLRLVVSVAKKYVQSGMPLLDLVQEGNIGLMKAVDRFEYRRGFKFSTYATWW 449 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ++ RAI + RTIR+P+H+ ++ R A E+ + + E+A +L + V Sbjct: 450 IRQSVSRAIADYGRTIRVPVHMADAMHRVKRVAGEMRQETGRPARSSELAARLGMSEEKV 509 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + R+ + S+D P+G +++ L +++ D P D D++ +I L L + Sbjct: 510 RSVQRVTRQPVSLDVPIGEEADTTLGEMVEDSSTLAPLDALLQADLRVAIDAALGVLTPR 569 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + +V+ RFG+ TLE++G + +TRERVRQIQ + L++LR Sbjct: 570 EAKVIKLRFGVDAVSEHTLEELGDQFDVTRERVRQIQNKALQKLR 614 >UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobia RepID=B2KBW8_ELUMP Length = 571 Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 148/230 (64%) Query: 93 RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQ 152 ++I++NLRLVV IA+++ N L L DLI+EG LGL++AVEKF+ +RGF+FSTYATWWIRQ Sbjct: 336 KLIKANLRLVVSIAKKHVNSNLELSDLIQEGGLGLMKAVEKFEYKRGFKFSTYATWWIRQ 395 Query: 153 TIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM 212 +I RAI +Q TIR+P+H+ + ++ + + + EPS E+ ++ L ++ V + Sbjct: 396 SINRAIADQANTIRIPVHMKELVSKLTKVTNKFRQEHGREPSLEDYSKSLRLSMEKVKGV 455 Query: 213 LRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQRE 272 L++ + S+ TP+G D + L D + D+ P T D KQ + + L L+ ++ + Sbjct: 456 LKIMQDPISLSTPVGEDEDSNLEDFIEDKAGANPTVTASDFLRKQEVSEVLNTLSEREAK 515 Query: 273 VLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++ RFG+ TLE+VG+ +TRERVRQI+ + +R+LR +T+ L Sbjct: 516 IIRLRFGIDSGYPRTLEEVGKMFNVTRERVRQIEAKAIRKLRHPSRTKML 565 >UniRef50_B5YES0 RNA polymerase sigma factor n=2 Tax=Dictyoglomus RepID=B5YES0_DICT6 Length = 413 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 81/147 (55%), Positives = 112/147 (76%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D ++YL EIG PLLT EEE+ A+R +GD +++++IE+NLRLVV +A+RY RGL+ Sbjct: 70 DPVKMYLKEIGKIPLLTPEEEIELAKRVEQGDEEAKKKLIEANLRLVVSVAKRYIGRGLS 129 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 LDLI+EGNLGLI+AVEKFD +G++FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ + Sbjct: 130 FLDLIQEGNLGLIKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETM 189 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQL 202 N + R L+ L +P+ E+IA+ L Sbjct: 190 NKIHKITRLLTQNLGRKPTEEDIAKFL 216 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 79/133 (59%), Gaps = 10/133 (7%) Query: 182 ARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADE 241 A+EL H L+ EEI +Q +K V ++S M + S++ P+G D + L D + + Sbjct: 277 AKELKHVLE-----EEIRQQTEK-VREISMM---GQEPLSLEMPVGEDEDNRLADFVEN- 326 Query: 242 KENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRER 301 K+ P D +K+ I + L EL+ ++RE+L RFGL + TLE+VG+ +TRER Sbjct: 327 KDLSPADIAVQKSLKKDIEELLNELSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRER 386 Query: 302 VRQIQVEGLRRLR 314 +RQI+ + LRRLR Sbjct: 387 IRQIEAKALRRLR 399 >UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNW0_ACAM1 Length = 299 Score = 177 bits (448), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 107/272 (39%), Positives = 159/272 (58%), Gaps = 22/272 (8%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARR---AL----------------RGDVASRRRMIE 96 DA YL +G LLT EEV ++ AL RG A + RMI Sbjct: 10 DALGAYLTRMGGYSLLTHAEEVSLGQQIQSALNPPQGISQAELDQIQKRGKRA-KHRMIC 68 Query: 97 SNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIER 156 NLRLVV IA++Y RG+ L+DLI+EG+LGL RAVEKFDP +G+RFSTYA WWIRQ+I R Sbjct: 69 GNLRLVVTIAKKYQKRGMDLIDLIQEGSLGLERAVEKFDPAKGYRFSTYAYWWIRQSITR 128 Query: 157 AIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLN 216 AI Q+ TIR+P+H+ ++LN R RELS L P+ +E+ +L ++ + + L+ Sbjct: 129 AIAMQSHTIRIPVHMTEKLNRIKRVRRELSQTLGRTPTHQEMVAELGITLEQLQKTLQAA 188 Query: 217 E--RITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVL 274 + S++ +G D E L D+L D + P + + D ++ ++ L +LN +R VL Sbjct: 189 QISNPESLNIRVGKDQEMELGDLLEDLQMPSPNEVVEQDFLRNALWSALAQLNDNERTVL 248 Query: 275 ARRFGLLGYEAATLEDVGREIGLTRERVRQIQ 306 R+GL +L V +++G++RE VR+++ Sbjct: 249 ILRYGLEDGRERSLYRVSQQMGISREWVRKLE 280 >UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK04_9BACT Length = 404 Score = 176 bits (447), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 143/232 (61%) Query: 94 MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 153 M+E NLRLV+ IAR+Y N LDLI+EGN+GL+ AVEK+D G+ FSTYATWWIRQ Sbjct: 172 MVEGNLRLVISIARKYSNSQEGFLDLIQEGNIGLVSAVEKYDASFGYTFSTYATWWIRQA 231 Query: 154 IERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRML 213 + RA RT++LP +I+ ++N RT REL K E + +E++E ++ + + Sbjct: 232 VSRARTELVRTMKLPANIMVKVNKIYRTERELFQKFGREATIDEVSEAVELSPAKIRSLK 291 Query: 214 RLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 R+ ++ S+ T + + L DI++++ + P+ + + +S+V L LN +++E+ Sbjct: 292 RMCQQPISLQTTVSEEHTGELGDIVSNDDDVLPDAEVEQKQLHESLVAMLDILNEREQEI 351 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 L RFGL E TLE++ E G++RER+RQI+ L++LR + L ++ Sbjct: 352 LRMRFGLADGEYHTLENIANEFGISRERIRQIETSALKKLRRPTAVKCLGLD 403 >UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J802_MYCHP Length = 538 Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 108/323 (33%), Positives = 180/323 (55%), Gaps = 31/323 (9%) Query: 16 EFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQ------RVLDATQLYLGEIG-YS 68 +FD N + L E D L+EE++ Q + D + Y+ IG Y Sbjct: 203 DFDANNL-------LKEYNDEDIKLSEEKVYDQDDIKLTNKLTETNDIVKWYMRWIGKYG 255 Query: 69 PLLTAEEEVYFARRALRGDVA--------SRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 LLT EE A++ A +R +++ NLRLV+ A+RY NRGL +DLI Sbjct: 256 KLLTTNEEQALAKKMQEAKEANNYYKYKKARDMLVKRNLRLVINNAKRYKNRGLNFIDLI 315 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 EGN G+++AV K+D +GF+FSTYATWWIRQ I RA+ +Q RT+R+P+H+V+ +N L+ Sbjct: 316 SEGNAGIMKAVSKYDYTKGFKFSTYATWWIRQAITRAVADQARTVRVPVHMVETINKILK 375 Query: 181 TARELSHKLDHEPSAEEIAEQL--DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 REL + + P+ EEIA++ D + V + ++N S+D +G + + D + Sbjct: 376 IERELQQENGYPPTDEEIAKKYGGDFTAEKVRYIRKINIDPISLDKNIGKEENSSFSDFV 435 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQ--REVLARRFGLLG-----YEAATLEDV 291 DE P +++ I + + E + Q R+++ +RFG+ Y+ TL+++ Sbjct: 436 KDESVISPTSYASHEELSVIINEMIEEGLSDQADRDLIRKRFGINDLKGNKYKPHTLDEL 495 Query: 292 GREIGLTRERVRQIQVEGLRRLR 314 +E+G+++E+VRQ++ + LR+L+ Sbjct: 496 SKELGISKEKVRQLETKVLRKLK 518 >UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3QZV6_PHYMT Length = 419 Score = 176 bits (446), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 107/294 (36%), Positives = 165/294 (56%), Gaps = 32/294 (10%) Query: 53 RVLDATQLYLGEIGYSPLLTAEEE------VYFARRA----------------------- 83 + D ++YL EIG PLLT EEE VY R A Sbjct: 108 KFYDPVKIYLKEIGQIPLLTLEEEQEQFRLVYDGREAEAKLESYRKKEIELSEKEISELN 167 Query: 84 --LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 L+ ++ R++E+N RLVV IA+RY RGL LDLI+EGN GL+RA+EKF+ ++G + Sbjct: 168 DILKISNKAKHRLVEANYRLVVSIAKRYIRRGLEFLDLIQEGNRGLMRAIEKFNIDKGCK 227 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 STYAT+WI Q I RA+ +Q R IRLP+HIV +N+ +L KL EP+ EE++E Sbjct: 228 LSTYATFWIVQKILRAVADQARIIRLPVHIVDRINIISMAKSKLRLKLHREPTIEELSEF 287 Query: 202 LDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 ++ + + + ++ S++ +G + +L + ++D P D + MK ++ + Sbjct: 288 INISEKKLRIIEIIKKKPISLEARVGEKDDSSLGEFISDPDSLSPHDYMLQEIMKNTLNE 347 Query: 262 WLFE-LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 L + L ++ ++L R+GL + TLE+VG G+TRER+RQI+ + RRLR Sbjct: 348 ILEDTLTDREEKILRMRYGLSNGKVHTLEEVGNVFGVTRERIRQIEAKAFRRLR 401 >UniRef50_B2KCU1 RNA polymerase sigma factor n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCU1_ELUMP Length = 380 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 100/272 (36%), Positives = 157/272 (57%), Gaps = 4/272 (1%) Query: 55 LDATQLYLGEIG-YSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG 113 +D+ Y +I S L+ EE +R +GD A+++RM+E NLRLV+ A+R+ + Sbjct: 5 VDSINQYFKKISEVSEDLSREEMEKLWKRIKKGDTAAKQRMMELNLRLVIPAAKRFMRKD 64 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 + LLDLIEEGNLGL++A+EKFDP +GFRFSTYA +WI Q I + I Q+ I++P H Sbjct: 65 IDLLDLIEEGNLGLLQAIEKFDPSKGFRFSTYAIYWIDQAIRKYIDEQSGAIKIPSHAWG 124 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLD---KPVDDVSRMLRLNERITSVDTPLGGDS 230 ++ + RT L L+ EPS E++ +LD + + + + + I S+ +G + Sbjct: 125 DIKKWTRTWNALKDSLEREPSLTEMSRELDWSARKIKSILETINAAKGIDSLALAIGEED 184 Query: 231 EKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLED 290 E L D L D+ + P+D +++ L ELN + +E+L R GL E TL + Sbjct: 185 EVTLEDTLTDDGKGNPDDVFSRSSSNSALLAALEELNPRDKEILMMRNGLKTNEPMTLSE 244 Query: 291 VGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 V + +GL+RERVRQI+ + +R+ G+ Sbjct: 245 VSKIMGLSRERVRQIEERAISHIRKKAHKLGI 276 >UniRef50_C7LZI2 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZI2_ACIFD Length = 302 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 99/265 (37%), Positives = 156/265 (58%), Gaps = 11/265 (4%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D+ +L+L ++ PL +A E+V A+R GD ++ M+ +NLRLVV ARRY +RG+ Sbjct: 35 DSIRLFLDDLAKHPLPSAAEQVELAKRVREGDEDAKAEMVAANLRLVVHWARRYQDRGVE 94 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 L DLI+EG GLIRAVEKFD RGF+FSTYATWW+RQ+++RA+ N + IRLP+ + Sbjct: 95 LADLIQEGTFGLIRAVEKFDWRRGFKFSTYATWWVRQSLQRAVHNHGQAIRLPMEAAERS 154 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 REL+ L P+ EEIA + ++ + + S+D +G + E +L Sbjct: 155 RRVDNVTRELAADLGRAPTEEEIAMAANLSASQLADVRHAARVVASLDQAVGPEGETSLG 214 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLF-----ELNAKQREVLARRFGLLGYEAATLED 290 D++ +DT+ ++++ +SI + + EL+ +R+V+ RFGL G A+LE Sbjct: 215 DLVV------AQDTSFEEEVDESISREMLRRAVEELDELERQVVTLRFGLQGDRPASLEA 268 Query: 291 VGREIGLTRERVRQIQVEGLRRLRE 315 R +G+ R R+++ L +L E Sbjct: 269 TARILGIGPRRARRLEASALAKLAE 293 >UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria RepID=A1S281_SHEAM Length = 969 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 149/247 (60%), Gaps = 14/247 (5%) Query: 82 RALRGDV-ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 + L+ D+ A+R MI NLRLV+ +A +Y RGL L DL++EGN+GL++AVEKFD +GF Sbjct: 724 KKLQRDISAARDEMITFNLRLVLSVANKYLGRGLELADLVQEGNIGLMKAVEKFDHRKGF 783 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYATWWIRQ I RAI +Q R IR+P+H+ + LN + ++ L+HK P E++ Sbjct: 784 KFSTYATWWIRQAITRAIADQARIIRIPVHVNESLNKLISASKVLTHKFGRGPKISELSL 843 Query: 201 QLDKP---VDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257 L P V+++ ++L + E + D G + A + PE+ DDD Sbjct: 844 ILSMPETKVENLKQILVM-EPVAEADHNTNGYVDWAAM---------SPEEEIIDDDRDT 893 Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 +I L L K+++VL RFG+ TLE+VG++ +TRER+RQI+ + L++L Sbjct: 894 NIKDLLKGLTDKEKKVLELRFGINAATELTLEEVGQQFDVTRERIRQIEAKSLKKLAHTS 953 Query: 318 QTQGLNI 324 ++ L I Sbjct: 954 RSSHLAI 960 >UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium caldarium RepID=Q9ZTL1_CYACA Length = 589 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 146/230 (63%), Gaps = 4/230 (1%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ RM+ +NLRLV+ A+R+ NRG+A DL++EG++GLIR VEK+D RGFRFSTYA+WW Sbjct: 331 AKNRMVAANLRLVICFAKRFRNRGVAFQDLVQEGSIGLIRGVEKYDANRGFRFSTYASWW 390 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I +A++ ++ RLP+H+ + + R + EL + L EP+ EIA ++ P + V Sbjct: 391 IRQGIHKALLECSKMFRLPVHVNEMIKEIRRCSYELMNILGREPTKLEIAMKVGMPEEKV 450 Query: 210 SRMLRLNERITSVDTPL-GGDS---EKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE 265 +L+ + S++ PL G DS + L D+++ PED+ ++ + + L + Sbjct: 451 IFLLQRAQTALSLEMPLRGSDSSLESRTLGDVVSSTASPSPEDSAFGTSLRYDLERALSQ 510 Query: 266 LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 L+ ++REV+ RFGL +L +VG +TRERVRQI+ LR+LR+ Sbjct: 511 LDFREREVIRMRFGLDDGRTKSLGEVGSLFCVTRERVRQIETRALRKLRD 560 >UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderia RepID=A9ALE2_BURM1 Length = 525 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 88/215 (40%), Positives = 135/215 (62%), Gaps = 1/215 (0%) Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 151 R M+E+NLRLV+ IAR+Y NRG+ L DL+++G +GL+RA+EKF+ RGF+FSTYATWWIR Sbjct: 290 RAMLEANLRLVLSIARKYLNRGVDLSDLVQDGCIGLMRAIEKFEYRRGFKFSTYATWWIR 349 Query: 152 QTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSR 211 Q I RA+ ++ RTIR+P+H+ + R A + +P+ E+A + D + Sbjct: 350 QAIARAVADRARTIRVPVHVGDQHQRVRRQALRFRQRTGRQPTPAELAAETGLAEDKLRA 409 Query: 212 MLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQR 271 +L L S+DTPL D++ L+D++ DE P + M++ + L + + Sbjct: 410 ILALPAEPVSLDTPL-PDADTGLVDLIEDETSASPFEQLAGTRMRECVRSLLRSVTPTEA 468 Query: 272 EVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQ 306 +VL RRFGL G E T + + ++ G++RERVRQI+ Sbjct: 469 DVLRRRFGLGGTEPDTYDAIAKDAGMSRERVRQIE 503 >UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31 Tax=Bacteria RepID=RPOD_SERMA Length = 215 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 83/202 (41%), Positives = 136/202 (67%) Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 L LDLI+EGN+GL++AV+KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ Sbjct: 1 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 60 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 +N R +R++ ++ EP+ EE+AE++ P D + ++L++ + S++TP+G D + Sbjct: 61 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 120 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 L D + D P D+ + ++ + L L A++ +VL RFG+ TLE+VG+ Sbjct: 121 LGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREXKVLRMRFGIDMNTDHTLEEVGK 180 Query: 294 EIGLTRERVRQIQVEGLRRLRE 315 + +TRER+RQI+ + LR+LR Sbjct: 181 QFDVTRERIRQIEAKALRKLRH 202 >UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C9_CYAPA Length = 431 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 115/309 (37%), Positives = 166/309 (53%), Gaps = 53/309 (17%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARR--------------------------------- 82 D+ + YL EIG LL AE+E+ A+R Sbjct: 112 DSGRRYLQEIGEISLLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAAL 171 Query: 83 --------ALRGDVASRRRMIESNLRLVVKIARRYGN-RG-LALLDLIEEGNLGLIRAVE 132 +R +R R++ +NLR VV +A++Y RG +++ DLI+EGN+GLIRAVE Sbjct: 172 SDAEELRHMVRVGTLARDRLVRANLRWVVAVAKKYHKQRGTMSMQDLIQEGNIGLIRAVE 231 Query: 133 KFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHE 192 KFDP G+RF+TYATWWIRQ I R+I N +R IRLP H +++N R LS L + Sbjct: 232 KFDPRMGYRFTTYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQ 291 Query: 193 PSAEEIAEQLDKPVDDVSRMLRLNERITSV-----DTPLG-GDSEKALLDILADEKENGP 246 P+ EIAE + D SRM + E +V D P+ D++ A + + GP Sbjct: 292 PTEAEIAEHVGL---DPSRMRKFVESAAAVATVSLDVPINESDNQSATIGDFIRSENEGP 348 Query: 247 EDTTQDDDMKQSIVKWLFE-LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQI 305 D + + M++S+ + L + L+ ++ VL RFGL E TL VG +G+TRERVRQI Sbjct: 349 ADRAERELMRESVARTLAKALSEREYMVLRMRFGLDDGEPKTLNQVGETLGVTRERVRQI 408 Query: 306 QVEGLRRLR 314 +++ LR+LR Sbjct: 409 EMKALRKLR 417 >UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsia RepID=Q2GE94_NEOSM Length = 620 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 143/247 (57%), Gaps = 21/247 (8%) Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 A++ RM+E+NLRLV+ IA++Y NRG+ DLI+EGN+GL++AV+KFD RG +FSTYATW Sbjct: 360 AAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKAVDKFDHRRGHKFSTYATW 419 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 W RQ I RAI + +R P+HI + N +RT R L + EP+ EEIA L D Sbjct: 420 WCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRLYNLNGREPTVEEIANLLKISPDK 479 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALL-DILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V + L++N+ S+++P+G DS D + D+ D ++++ + + L L+ Sbjct: 480 VKKSLKVNQDPISLESPVGDDSNSGSFGDFIEDKNAVSQVDVVLSKNLRKVLDEALAMLS 539 Query: 268 AKQREVLARRFGLLGYEAA--------------------TLEDVGREIGLTRERVRQIQV 307 ++ ++L RFGL + TLE VG +TRER+RQI+ Sbjct: 540 PREEKILRYRFGLCNSVHSPEDEHYLKSLKIDLNRGTNLTLEQVGILYNVTRERIRQIES 599 Query: 308 EGLRRLR 314 + LR++R Sbjct: 600 KSLRKMR 606 >UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LEA3_RALME Length = 617 Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 94/221 (42%), Positives = 145/221 (65%) Query: 94 MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 153 MI SNLRLVV A++Y +RG+ LLDLI+EGNLGL+RAV++FD RG++FSTYATWWIRQ Sbjct: 382 MIRSNLRLVVSNAKKYLHRGMPLLDLIQEGNLGLMRAVDRFDYRRGYKFSTYATWWIRQG 441 Query: 154 IERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRML 213 I RAI ++ TIR+PIH+V+ + R +REL H+ P+ E +A +L V V +L Sbjct: 442 ITRAIADKGPTIRIPIHLVEVVGKVNRASRELFHETGEAPAPEALAARLSLSVKKVKAIL 501 Query: 214 RLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 L + S++ +G + L D L DE P+++ +++ + + L L ++ ++ Sbjct: 502 DLVKEPLSLEMSVGESGDALLWDTLTDECSASPDESAMRVSLRKDLDEALATLKPREAKI 561 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + R+G+ TLE++G++ GL+RERVRQ++ + LR+LR Sbjct: 562 VKMRYGVDAGTDYTLEEIGQQYGLSRERVRQLERQALRKLR 602 >UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroidetes/Chlorobi group RepID=Q2S172_SALRD Length = 313 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 108/271 (39%), Positives = 164/271 (60%), Gaps = 3/271 (1%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGN 111 QR+LD YL EIG LL EEEV ARR GD + ++ +NLR VV +A++Y Sbjct: 41 QRMLDQ---YLQEIGKIDLLEPEEEVELARRIEDGDEEALHKLCRANLRFVVSVAKKYQG 97 Query: 112 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 171 +GL+L DLI EGN GLI+A ++FD RGF+F +YA WWIRQ I +A+ Q+R +RLP++ Sbjct: 98 QGLSLADLINEGNYGLIKAAKRFDETRGFKFISYAVWWIRQAILQALAEQSRVVRLPLNR 157 Query: 172 VKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSE 231 + ++ + + L LD +P+ EE+AE+L+ V V ++ R S+D P + + Sbjct: 158 IGTISKIRKASARLQQDLDRKPNIEELAEELEIDVQKVREAMKHTSRHLSMDAPFNEEDD 217 Query: 232 KALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDV 291 +LLD+L DE + P++ + +K I + L L+ ++ E+ FG+ TLE++ Sbjct: 218 NSLLDVLPDEDNDSPDEEMLSESVKIDIERALSALHDREAEITRLYFGIGREHPLTLEEI 277 Query: 292 GREIGLTRERVRQIQVEGLRRLREILQTQGL 322 G+ LTRERVRQI+ + LR+LR+ Q L Sbjct: 278 GKRFDLTRERVRQIKEKALRKLRQRHSKQDL 308 >UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4C50 Length = 521 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 142/227 (62%) Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 A R+ + E+NLRLVV IA+ Y NRGL DLI+EGN GL+RAV+K++ F+F TYATW Sbjct: 279 AVRKELAEANLRLVVSIAKNYRNRGLPFSDLIQEGNRGLMRAVDKYEWRLEFKFGTYATW 338 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 W+RQ I RA+ + RT+R+P H + L+ + EL+ EP++EE+AE L ++ Sbjct: 339 WVRQGITRALHDNARTVRVPCHQISLLSRMEKLRGELTVATGREPTSEELAEALGVKPEE 398 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 + + S++ +GGD E+AL D L+D + P + + +K+ I + L L Sbjct: 399 ARSLRIVGRHPVSLNDSVGGDGERALEDFLSDTHISPPGEHVDANLLKERIGEVLKSLAP 458 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 ++REV+ RFGL TL++V ++ G+TRER+RQI+ GL +LR+ Sbjct: 459 REREVIELRFGLKDGTPKTLDEVAKQYGITRERIRQIEARGLLKLRQ 505 >UniRef50_A1TWY8 RNA polymerase, sigma 32 subunit, RpoH n=2 Tax=Marinobacter RepID=A1TWY8_MARAV Length = 330 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/258 (36%), Positives = 148/258 (57%), Gaps = 5/258 (1%) Query: 62 LGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIE 121 +G +G + +A RRA +A R R+I+SNLRL V IARRYG+ G+A+ DLI+ Sbjct: 73 VGSLGDACAFSAR-----CRRAYHLALACRHRLIQSNLRLAVHIARRYGHHGIAMSDLIQ 127 Query: 122 EGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRT 181 + N+GLI+AVE++DP +GFRFSTYA WWI + + R + R + P ++V+E+ + Sbjct: 128 DANVGLIKAVERYDPGKGFRFSTYAYWWISEEVRRCLQRGVRVVHTPENVVEEIRQLQKV 187 Query: 182 ARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADE 241 + L L EP+ E+A +++ + + L R S D PL D L D L Sbjct: 188 SMRLHQSLGREPTQSELAREMEATPSRIGELRALAAREVSTDVPLVEDGSVTLADSLDAG 247 Query: 242 KENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRER 301 + P+ + D + + + L+ ++R++L RR+GL E TL+ + ++GL+RER Sbjct: 248 ADTRPDQPFRARDRMIRLERMMGALSDRERDILTRRYGLGLIEPETLQTISEQLGLSRER 307 Query: 302 VRQIQVEGLRRLREILQT 319 VRQI+ LR+L+ + T Sbjct: 308 VRQIEKGALRKLQTLFGT 325 >UniRef50_A5UVI3 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UVI3_ROSS1 Length = 398 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 94/248 (37%), Positives = 152/248 (61%), Gaps = 7/248 (2%) Query: 78 YFARRALRGDVASRRRMIESNLRLVVKIARRYG--NRGLALLDLIEEGNLGLIRAVEKFD 135 Y A R ++ + ++ NLRLV KIA RY R L DL++EG +GL++A+E+FD Sbjct: 146 YAAERRIKASEEAIDTLMRCNLRLVAKIATRYMPYARHLTFDDLLQEGRIGLLKAIERFD 205 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 R STYA +WIRQ+I+RA+ +Q R +RLP+HIV++L+ +T + EP Sbjct: 206 QNCRGRLSTYAVYWIRQSIQRALADQDRMVRLPVHIVEQLHRLRKTCEQFRCIHGREPGD 265 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 E+A L + V + R+ + TS+D P+G D+ L +++AD++E GP+ + + Sbjct: 266 AELANALGVSLAKVRSLWRVAQHHTSIDRPVGADTNTFLGELIADDREEGPDFICEQQLL 325 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL-- 313 + + L L++++R++L RR+GL+ + TLE++G+ GLTRER+RQI+ + L+RL Sbjct: 326 HAVLREVLGHLSSRERDILERRYGLIDGQTHTLEEIGQIFGLTRERIRQIERKALKRLNR 385 Query: 314 ---REILQ 318 R ILQ Sbjct: 386 GEYRRILQ 393 >UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMH4_MYCA5 Length = 513 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 98/291 (33%), Positives = 173/291 (59%), Gaps = 19/291 (6%) Query: 42 EEELLSQGATQRVLDATQLYLGEIG-YSPLLTAEEEVYFARR---ALRGDVASRRR---- 93 E+ +LS T+ D + Y+ IG Y LLT ++E A + AL + R + Sbjct: 204 EDNMLSNKLTE-TNDIVKWYMRWIGKYGKLLTPKKERELAIKMEEALANNNYYRYKRARD 262 Query: 94 -MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQ 152 +++ NLRLV+ A+RY NRGL+ +DLI EGN G+++AV K+D ++GF+FSTYATWWIRQ Sbjct: 263 MLVKRNLRLVINNAKRYKNRGLSFIDLISEGNSGIMKAVSKYDYKKGFKFSTYATWWIRQ 322 Query: 153 TIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL--DKPVDDVS 210 I RA+ +Q RTIR+P+H+V+ +N L+ REL + + P+ EEIA++ D + V Sbjct: 323 AITRAVADQARTIRVPVHMVETINKILKIERELQQEFGYPPTDEEIAKKFGGDFTAEKVR 382 Query: 211 RMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL-FELNAK 269 + ++N S+D +G + + D + DE P D ++ + + + L+ + Sbjct: 383 YIRKINIDPISLDKNIGKEENSSFSDFVKDESVISPNDFASQQELAVILNEMINSSLDPE 442 Query: 270 QREVLARRFGL------LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + ++ +R+G+ + Y TL+++ +E+ +++E+VR+++ + LR+L+ Sbjct: 443 DQALIRKRYGVGQDPSGVPYRPHTLDELAKELNISKEKVRKLEAKILRKLK 493 >UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G031_9DELT Length = 431 Score = 170 bits (431), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 151/245 (61%), Gaps = 1/245 (0%) Query: 75 EEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 E V RR+ R +++ + +++NLRLVV IARR+ + + L DLI+EGN+GL++AV++F Sbjct: 182 EYVANVRRSSRKLRSAKNKFVKANLRLVVSIARRFNHGRMPLQDLIQEGNIGLMKAVDRF 241 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D +GFRFSTY +WWIR I RAI ++ R +RLP+H++ + + REL KL EP+ Sbjct: 242 DYRKGFRFSTYGSWWIRHAISRAIADKGRQVRLPVHMIDAYHKVNKARRELEAKLGREPT 301 Query: 195 AEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253 EE+A+ + + RM L + S+D P+ + + D L DE P + + D Sbjct: 302 REELAQHTGIALAKIERMGTMLVDNPISLDKPVSDADGRKMGDFLEDENAEDPGEGLEAD 361 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 + + + + + +L + +++ +RFGL+ E TL+++G + L+RER+RQ+Q + L ++ Sbjct: 362 ALNEQVKRLVSKLRPIEADIIRKRFGLIDDEELTLKEIGGQYSLSRERIRQLQEQALGKI 421 Query: 314 REILQ 318 R L+ Sbjct: 422 RRELK 426 >UniRef50_A6FGX1 DNA-directed RNA polymerase, sigma subunit n=1 Tax=Moritella sp. PE36 RepID=A6FGX1_9GAMM Length = 294 Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 101/270 (37%), Positives = 153/270 (56%), Gaps = 3/270 (1%) Query: 56 DATQLYLGEIG-YSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 +A +Y E+ +S LL+ +EE A A GD A+R MI+SNLRLV+ +A++Y N L Sbjct: 7 NALDVYFDELQRFSQLLSKQEEYDTAVAAANGDKAARDTMIQSNLRLVLMVAKKYQNYSL 66 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 ++I+EGN GL+ AV+KFDPERG RFSTYA WWIR IE+ IMN +RTIR+PIH+ + Sbjct: 67 DWAEIIQEGNTGLMHAVDKFDPERGCRFSTYAVWWIRNNIEQYIMNHSRTIRIPIHVTRV 126 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRML--RLNERITSVDTPLGGDSEK 232 L+ + EL +D +IA++L V +L NE + G + Sbjct: 127 YKQILKASSELGLDVDTNEGITKIAQELKISPRKVLNILGHYFNEGSLDKEIHSGDNLLA 186 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 L D++A E + P+ + D + + L L + + ++ RFG G + +L+ + Sbjct: 187 TLKDLVAAEVDCQPDIRYEKCDYYEYMDALLEYLPVRSQNIIRLRFGFKGQDPMSLQAIA 246 Query: 293 REIGLTRERVRQIQVEGLRRLREILQTQGL 322 + + ++RERVRQI GL ++RE L L Sbjct: 247 QLMDISRERVRQIIRNGLSQVREQLCANDL 276 >UniRef50_UPI0001C32423 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32423 Length = 300 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 110/264 (41%), Positives = 153/264 (57%), Gaps = 7/264 (2%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY-GNR 112 LDA QL+L PLLT EE+ +RR RGD+A++ R++ NLRLVV IARR+ G Sbjct: 27 TLDALQLFLRRASRYPLLTPAEELALSRRIERGDLAAKERLVNHNLRLVVSIARRFQGVS 86 Query: 113 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172 L LLDL++EG +GLIRA EKFD RGFRFSTYAT WIRQ I+R I RTIRLP+++ Sbjct: 87 ELTLLDLVQEGVVGLIRAAEKFDWRRGFRFSTYATLWIRQAIQRGIATHGRTIRLPVNVA 146 Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232 + AR L +L P+ EEI+ D P D V+ + ++ + S+D + D++ Sbjct: 147 QRERKVAAAARRLEAELGRAPTVEEISSASDLPPDQVADLREVSRTLASLDQVVTADTDT 206 Query: 233 ALLDILADEKENGPEDTTQDDDMKQ--SIVKWLFELNAKQREVLARRFGL-LGYEAATLE 289 L ++L E PE Q D + Q ++ + + L + QR+V+ RFGL Sbjct: 207 TLGELLPSE---APEVEEQVDALLQAETVRRTVEHLPSPQRDVIKLRFGLEEDRTPLPHA 263 Query: 290 DVGREIGLTRERVRQIQVEGLRRL 313 +GR + L +VR I+ E L RL Sbjct: 264 QIGRRLALATAQVRAIEREALARL 287 >UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=2 Tax=stramenopiles RepID=A5JEM2_9STRA Length = 404 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 102/287 (35%), Positives = 160/287 (55%), Gaps = 24/287 (8%) Query: 65 IGYSPLLTAEEEVYFA--------RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLAL 116 +G P T EE V F R+ L+ S+ +I +NLRLVV A+ Y RG++ Sbjct: 117 LGRKP--TEEEWVNFVGLKSIDDIRKNLKRASKSKSAIINANLRLVVSTAKAYQYRGVSF 174 Query: 117 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELN 176 DL++EG GL +A EKFDP +GFRFSTYATWWI+Q I RA+ +Q+R +RLP+H+ L Sbjct: 175 QDLVQEGTCGLHKATEKFDPRKGFRFSTYATWWIKQGIMRAVTDQSRVVRLPVHVHDALF 234 Query: 177 VYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLG--------G 228 R + EP+ E+AE + + ++++S+D +G Sbjct: 235 HIRRAKANFWTEHLREPTLAELAEATGLTPQKIVFYDTVKDKVSSIDKTVGIGTKTNSME 294 Query: 229 DSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATL 288 S+ A+ D+ D + N PE+T Q + ++Q I + + L+ ++++V+ R+GL E TL Sbjct: 295 KSQIAISDMCKDSR-NKPEETAQVESLRQDISRLINTLSPREQDVVRMRYGLDDGEIRTL 353 Query: 289 EDVGREIGLTRERVRQIQVEGLRRLREILQTQGL-----NIEALFRE 330 E++G +TRERVRQI+ L +LR+ + L +++ALF E Sbjct: 354 EEIGSIFSVTRERVRQIEARALHKLRQPYRNHRLKGQLDSVDALFHE 400 >UniRef50_A6GB19 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GB19_9DELT Length = 384 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 140/228 (61%), Gaps = 1/228 (0%) Query: 96 ESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE 155 ++NLRLVV +ARR N L L DLI+EGN+GL++A+E+FD +GFRFSTYA+WWIR +I Sbjct: 156 KANLRLVVSLARRLSNGRLPLQDLIQEGNIGLLKAIERFDHRKGFRFSTYASWWIRHSIS 215 Query: 156 RAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRL 215 RAI N+ R +RLP+H+ R R ++ EP+ EEIA ++ P+ V ++ + Sbjct: 216 RAIYNKGRQVRLPVHVYDVHQKITRVRRRYEAQIGREPTHEEIANEIGVPLAKVEKIAAI 275 Query: 216 N-ERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVL 274 I S+D PL + +++ +D+L D+ GP + ++++ + L L + ++L Sbjct: 276 ELGPIVSLDAPLSRNDDRSGVDLLEDQVSPGPGFELELGELEEGLEDALSALRPMEADIL 335 Query: 275 ARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 RR+GL G E TL ++G L+RER+RQ+Q + R+RE + L Sbjct: 336 RRRYGLDGVEKETLREIGERYALSRERIRQLQERAVSRMREEFARRSL 383 >UniRef50_Q2T2N0 RNA polymerase sigma factor n=32 Tax=pseudomallei group RepID=Q2T2N0_BURTA Length = 483 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 135/226 (59%) Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 A+ RM E+NLRLV+ IAR+Y +RGL L DL++EGNLGL+RA+EKF+ RGF+FSTYATW Sbjct: 242 AATARMAEANLRLVLSIARKYASRGLDLADLLQEGNLGLLRAIEKFEYRRGFKFSTYATW 301 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RAI ++ RTIR+P+H+ E + A + + S E++E + Sbjct: 302 WIRQAISRAIADRARTIRVPVHVGDEARRVRKVADRIERRSGARASLAELSEATGLSAER 361 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 + +L L S++ PLG D + DI+ D D M + L ++A Sbjct: 362 LRAVLMLPREPRSLNAPLGDDDQAEFGDIVEDASTPSLFDALAQGQMCDVVTSLLKTMSA 421 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++ ++L RRFG+ G E + E + + G++RE++R+I+ L+ LR Sbjct: 422 QEADILRRRFGIGGDEPWSYEQIAAQAGVSREQIRRIEKRALQTLR 467 >UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7J7_9BACT Length = 428 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 134/225 (59%), Gaps = 1/225 (0%) Query: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 150 R++MIE+NLRLV+ IA++Y NRGL DLI+EGNLGL+RA+EKFD G +FSTYA+WWI Sbjct: 187 RQKMIEANLRLVISIAQKYRNRGLPFNDLIQEGNLGLLRALEKFDFRLGNKFSTYASWWI 246 Query: 151 RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVS 210 + I R+I Q+R IR+P H+V +N + EP +E+A L+ PV +S Sbjct: 247 KHNISRSIAEQSRVIRIPAHMVHAINSMTWAEQRFIQSHGREPEIDELAAVLEMPVARIS 306 Query: 211 RMLRLNERITSVDTPLGGDSEKALL-DILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + +++ + S+ P+ + A+L D++AD+ P + + + L L + Sbjct: 307 AIRKMSCQTISLQAPVSSSEDGAMLEDLIADDSTANPVRDFARKILYDKLYEMLRTLPER 366 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++++ RFGL G L D+ R LTRER+RQ++ + + LR Sbjct: 367 DQQIIILRFGLFGQPCLPLVDISRRFNLTRERIRQLEAKIIENLR 411 >UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LPW6_HALO1 Length = 465 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 150/236 (63%), Gaps = 3/236 (1%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +R +++NLRLVV IARR+ + ++L DLI+EGNLGLI+AVE++D RGFRFSTYA+WW Sbjct: 229 ARNEFVKANLRLVVSIARRFNHGRMSLADLIQEGNLGLIKAVERYDYRRGFRFSTYASWW 288 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IR I RA+ ++ R +RLP+H++ + L+ +L++ L +P++EE++E + V+ + Sbjct: 289 IRHAIGRALADKGREVRLPVHMLDAHHRLLKAQHQLTNTLGRQPTSEELSEAANLSVEKI 348 Query: 210 SRM-LRLNERITSVDTPLGGDSEKALLDILADE--KENGPEDTTQDDDMKQSIVKWLFEL 266 +M L ++ S+D P+ + +++ ++L D +E+ + M + K L L Sbjct: 349 EKMRTHLLDQALSLDRPMNDEDGRSVAEVLQDPHGEEHSALNVLAQRTMSDEVRKTLQTL 408 Query: 267 NAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 + ++L RRFGL E TL+ +G + L+RER+RQ+Q + L ++R L+ + + Sbjct: 409 RPIEADILRRRFGLDNDEELTLKQIGEQYNLSRERIRQLQEQALTKMRVALRRKAM 464 >UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis RepID=B9S0J0_RICCO Length = 548 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 143/237 (60%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 SR ++I +NLR+VV IA++Y RGL+L DL++EG++GL++++EKF P+ G RF+TYA WW Sbjct: 308 SREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWW 367 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQT+ +AI +RTIRLP ++ L R + +H P+ EE+A+++ + Sbjct: 368 IRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRL 427 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 R+L + S+ + D E +I AD + PE M++ ++ L LN + Sbjct: 428 ERLLYMARMPLSMQQTVWADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPR 487 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEA 326 +R+++ R+G+ + +L ++G GL++ERVRQ++ L +L++ L + GL A Sbjct: 488 ERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQCLASHGLEAYA 544 >UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C8_CYAPA Length = 427 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 158/242 (65%), Gaps = 8/242 (3%) Query: 79 FARRALRGDVASRRRMIESNLRLVVKIARRYGNR-GLALLDLIEEGNLGLIRAVEKFDPE 137 F R L+G A R R+++SNLR VV IA++Y N+ + L DLI+EG++GL++A E+FD + Sbjct: 168 FQSRILKGRRA-RARLVQSNLRWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAERFDLD 226 Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197 +GF+F TYATWWIRQ I R++ +Q RTIRLP+H+ L + +T ++L+ +L P+ EE Sbjct: 227 KGFKFLTYATWWIRQAIFRSLQDQGRTIRLPVHVHDSLYLIKKTRQQLASRLGRIPTPEE 286 Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGD--SEKA---LLDILADEKENGPEDTTQD 252 +A++L+ PV ++ + + S+++P+ + S KA L D + E P++ + Sbjct: 287 LADELNIPVSRLAFITQAASLPISLESPISSETSSTKARNNLGDFIESECLQ-PDEQLER 345 Query: 253 DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRR 312 +++ + L L A++R+++ R+GL+ TL+++G +GLTRER+RQI+ +R+ Sbjct: 346 TMLREDLENVLATLKARERDIIRMRYGLVDGSPKTLDEIGEIVGLTRERIRQIEQSAMRK 405 Query: 313 LR 314 L+ Sbjct: 406 LK 407 >UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1P1_HERA2 Length = 303 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 106/286 (37%), Positives = 153/286 (53%), Gaps = 27/286 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEE------VYFARRALRGDVA-------------------- 89 D Q YL EI +PLL AEEE V+ AR+A Sbjct: 13 DGLQRYLNEIAETPLLAAEEEQKLTQIVHVARQAQPTPACRIERCPSCALFEQCVTKLKE 72 Query: 90 -SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 + +++ +NLRLVV IA+RY GL DLI+EGN+GL+ A+E+FD +G RFSTYATW Sbjct: 73 PAHEQLVRANLRLVVSIAKRYRGFGLPFQDLIQEGNIGLMNAIERFDATKGVRFSTYATW 132 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I R++ NQ R IRLP+H + L R +L L EPSA EI+ L P + Sbjct: 133 WIRQAITRSLANQGRLIRLPVHRWELLIKVRRIETKLLQALGREPSANEISTALGVPEEK 192 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 + +L + + S+ TP +++ L D L DE + Q L +L+ Sbjct: 193 ICDLLSIAQVPISLATPKNEETDMLLGDSLPDEDWEDELECLLTSIDAQYTRAMLNQLSE 252 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +++EVL R+GL ++ +L +VG +G TR+R++QI+ L+ LR Sbjct: 253 QEQEVLTLRYGLKDGKSRSLSEVGAVVGRTRQRIQQIEAGALQVLR 298 >UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6FX97_9DELT Length = 421 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 145/257 (56%), Gaps = 11/257 (4%) Query: 66 GYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNL 125 G P ++V + ALR S+ + +++NLRLVV IARR+ + + L DL++EGNL Sbjct: 159 GSRPFARYVQKVRSSGHALRW---SKNKFVKANLRLVVTIARRFDHGLMPLQDLVQEGNL 215 Query: 126 GLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAREL 185 GL++AV++FDP RG+RFSTYATWWIR I RA+ N+ RT+RLP H+ +L R REL Sbjct: 216 GLMKAVDRFDPTRGYRFSTYATWWIRHAINRALANKGRTVRLPAHVSADLQRLRRVTREL 275 Query: 186 SHKLDHEPSAEEIAEQLDKPVDDVSRMLRLN-ERITSVDTPLGGDSEKALLDILADEKEN 244 K P+ E++A+ V ++ +L + S+D P D + LLD L D Sbjct: 276 EAKTGETPTPEQLAQAAGLSKTRVRKLSKLTLDPTVSLDAPSHDDDARGLLDRLEDASVP 335 Query: 245 GPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL-------LGYEAATLEDVGREIGL 297 D + + + + L+ L + ++L RR+G+ + +E TL +G L Sbjct: 336 VAADILEHQALNEHLRDALYNLQPIELDILKRRYGIATSEAESVDFEPMTLRQLGERHSL 395 Query: 298 TRERVRQIQVEGLRRLR 314 +RER+RQ+Q L +LR Sbjct: 396 SRERIRQLQERALTKLR 412 >UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRC2_HALO1 Length = 436 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 138/231 (59%), Gaps = 3/231 (1%) Query: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 150 R + +NLRLVV +ARRY G+ L DLI+EGNLGL+ AV +FD RG RFSTYA WWI Sbjct: 203 RNEFVHANLRLVVTMARRYDRGGMPLADLIQEGNLGLMHAVSRFDYRRGLRFSTYACWWI 262 Query: 151 RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVS 210 R I RA+ +++R +R+P+H+++ + +L +L EP+ E+A+ P+ ++ Sbjct: 263 RHAIGRALADKSRAVRIPVHMLEAQQQLAKVQAKLIGELGREPTPSELAKAAQVPLAKLN 322 Query: 211 RMLR-LNERITSVDTPLGGDSEKALLDILAD--EKENGPEDTTQDDDMKQSIVKWLFELN 267 +M R L + S+D PL D ++A D+LAD +++ P D + + L L Sbjct: 323 QMHRYLMGQPMSLDRPLYDDDDRAFGDMLADPLSEDSSPVDDLTTQTLTSRVETLLDHLT 382 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318 + +VL +RFGL+ E T ++G + L+RER+RQIQ L +LR L+ Sbjct: 383 PIEADVLRQRFGLMDDEERTFREIGDQYDLSRERIRQIQNAALGKLRRALE 433 >UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KLN9_CYAP7 Length = 308 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 138/226 (61%), Gaps = 6/226 (2%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ ++++ NLRLV+ +A++Y RGL+ DL++EGN+GLIRA E F+P +G++FSTYA WW Sbjct: 83 AKNQLVQGNLRLVINLAKKYLGRGLSFEDLLQEGNIGLIRAAELFEPSKGYKFSTYAYWW 142 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI N RTIRLP+HI+ LN +T +L+ +L P+ +EIA L ++ Sbjct: 143 IRQQIIRAINNSARTIRLPVHIIARLNRIKKTQHKLAAQLGRTPTVQEIATSLQMSAQEI 202 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + + ++ S+ T + + L D++AD N D + + I++ + L + Sbjct: 203 EKYREVAQKTISLSTIVDEQGRETLQDLIAD--PNPQPDFLERVFSYEQILEKMETLPPR 260 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 +++L +R YE TLE +G L++ERVRQI + L RLRE Sbjct: 261 YQDILKKRI----YEEQTLEAIGTSTKLSKERVRQIFQKALSRLRE 302 >UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x (Fragment) n=2 Tax=rosids RepID=D1IHF7_VITVI Length = 561 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 136/233 (58%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 SR+++I +NLR+VV IA++Y RGL L DL++EG++GL+ +VEKF P G RF++YA WW Sbjct: 321 SRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWW 380 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ + +AI +RTIRLP ++ L R + H+P+ EEIAE++ ++ + Sbjct: 381 IRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKL 440 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 R+L S+ P+ D + ++ AD P+ + M+Q + L L K Sbjct: 441 QRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPK 500 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 +R ++ RFG+ TL ++G G ++ERVRQ++ L +L++ L + GL Sbjct: 501 ERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGL 553 >UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HIZ1_ARTCA Length = 951 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 129/220 (58%), Gaps = 2/220 (0%) Query: 93 RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQ 152 +++ NLRLVV IA+R+ RG+ LDLI+EGN GL RAV+KFD +GF+FSTYATWWIRQ Sbjct: 531 KLVSCNLRLVVSIAKRHTGRGMDFLDLIQEGNAGLYRAVQKFDYTKGFKFSTYATWWIRQ 590 Query: 153 TIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM 212 I R I +Q+RTIRLP+H +++ R + +AEEIAE K VD+++ + Sbjct: 591 AITRGIADQSRTIRLPVHFHEQVVSVFIAERNFLQSEGRDGTAEEIAEACGKTVDEINAV 650 Query: 213 LRLNERITSVD--TPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQ 270 R S+D P G + L + L D E D ++ ++ L L+ ++ Sbjct: 651 RRHRTPPASLDWEVPNGKGGVELLGETLYDPDEPTAYDAAVLAQLQSAVHGALDRLSERE 710 Query: 271 REVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310 VLA RFGL E TL+ +G G+TRER+RQI+ + Sbjct: 711 AGVLAYRFGLATGEQLTLDQIGTIYGVTRERIRQIEAKAF 750 >UniRef50_C0R0V4 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0R0V4_BRAHW Length = 287 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 150/255 (58%), Gaps = 2/255 (0%) Query: 60 LYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDL 119 LY + LLT EEE+ +R GD +R ++I SNLR V+ IA++Y N GL L DL Sbjct: 21 LYFADAKKEKLLTREEEIELTKRLKEGDAEARSKLIRSNLRFVITIAKQYKNSGLLLEDL 80 Query: 120 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179 I EGNLGLI A ++FDP++G+ F +YA +WIRQ+I RAI ++R IRLP++ +L Sbjct: 81 ISEGNLGLIIAADRFDPDKGYHFISYAVYWIRQSILRAINEKSRLIRLPLNKAMDLVDLE 140 Query: 180 RTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK-ALLDIL 238 R + +K + P E+A L+K +D+ ++ ++ S++ D K L+D + Sbjct: 141 RAVHQYYYKSGYTPDVNELATILNKDPNDILHIMSMSTEHISLEGEYNYDGMKDRLIDTI 200 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D+ E+T + ++ + + + L+ +++++ R+G + E TL++VG T Sbjct: 201 EDKTSKNVEETAINKELMEELKTAIESLSDIEKQIINARYG-IDQERKTLKEVGEMFSFT 259 Query: 299 RERVRQIQVEGLRRL 313 +ER+RQI+ + LR++ Sbjct: 260 KERIRQIEKKALRKM 274 >UniRef50_B7FPT1 Predicted protein n=2 Tax=Bacillariophyta RepID=B7FPT1_PHATR Length = 324 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 89/237 (37%), Positives = 141/237 (59%), Gaps = 12/237 (5%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +++RM++SN+RLVV IAR+Y N G++L DL++EG+LGL RA EKF+P++GF+FSTYA+WW Sbjct: 71 AKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYASWW 130 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 I+Q + R+I +RTIRLP+H+ LN + L +L P+ EE+AE+L + Sbjct: 131 IQQAVFRSIAYHSRTIRLPVHVHNLLNRVRKVRNNLQRELSRTPTNEEMAEELGMTLQKY 190 Query: 210 SRMLRLNERITSVDTP--------LGGDSEKALLDILADEK----ENGPEDTTQDDDMKQ 257 ++MLRL +R S++TP LG +S L D ++ E+ PE + Sbjct: 191 NKMLRLTKRSISLETPKYQSNPKDLGHESHDLLGDTISASSALFDESTPEKRVDRGIFHE 250 Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + + L L+ +R V+ R+GL T+ V ++ ++ VR + LR+LR Sbjct: 251 DLHEMLEILDEDERRVICSRYGLSDGLTRTVTAVASQMKQSKAWVRSQECRALRKLR 307 >UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESS1_SORC5 Length = 715 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 86/239 (35%), Positives = 146/239 (61%), Gaps = 3/239 (1%) Query: 82 RALRGDVASRRRMIESNLRLVVKIARRYGNRG-LALLDLIEEGNLGLIRAVEKFDPERGF 140 R+ + ++ R +++NLRLVV IARRY NRG L L+DLI+EGN+GL++AVE+FD RG+ Sbjct: 476 RSFQAQHDAKNRFVKANLRLVVSIARRY-NRGRLPLIDLIQEGNIGLMKAVERFDHSRGY 534 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 RFSTYA+WWIR I RA+ ++ R +R+P+H++ N R + + + HEP+ EE+ + Sbjct: 535 RFSTYASWWIRHAISRALADKGRAVRIPVHMLDTYNRVARATQAIIARTGHEPTIEELEK 594 Query: 201 QLDKPVDDVSRMLRL-NERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 + P + + ++ E S+D P+G + + +D L +E P D + + Sbjct: 595 ETGVPREKLDKVKDFYAETPFSLDRPVGDEDGRKFIDFLQEENALSPFDHLANRKWSDEV 654 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318 + L L + ++ RFGL + TL+++G + L+RER+RQ+Q + L ++R+ ++ Sbjct: 655 RRLLTTLTPIESRIIRWRFGLDDEDELTLKEIGDKYNLSRERIRQLQEQALGKIRKQMR 713 >UniRef50_B5RMW2 RNA polymerase sigma factor n=22 Tax=Borrelia RepID=B5RMW2_BORDL Length = 267 Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 159/263 (60%), Gaps = 17/263 (6%) Query: 60 LYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDL 119 +YL + L+T EEE+ A++ G + ++ +MI +NLRLV+KI +RY +GL + DL Sbjct: 11 IYLKSVREHRLITHEEEIELAKQIKLGSLKAKNQMINANLRLVLKIIKRYAGKGLKIEDL 70 Query: 120 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI---HIVKELN 176 I+EGNLGLIRA EK+DP + +FSTYA++WI+Q+++RA+ +TR +++P +++ ++N Sbjct: 71 IQEGNLGLIRAAEKYDPSKNTKFSTYASFWIKQSLQRALNTKTRLVKVPYRKENLILQIN 130 Query: 177 VYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLD 236 YL + P E+I E+ + +++ E+ S+D + G LL+ Sbjct: 131 KYLMEE-------EKSPKKEDIMERFNLTTAQYVKIIPYLEKEYSLDKKIEGSENSTLLN 183 Query: 237 ILADEKENGPEDTT-QDDDMKQSIVKWLFE--LNAKQREVLARRFGLLGYE-AATLEDVG 292 + D N PE T Q+ +K + ++ E LN K+R ++ +R+ L + +TL+D+ Sbjct: 184 LYEDNSFN-PESTLEQNSTLKH--LNYILETKLNEKERYIIKKRYNLDNSDKKSTLKDIS 240 Query: 293 REIGLTRERVRQIQVEGLRRLRE 315 E+G++ E VRQI+ L++LRE Sbjct: 241 TELGISSETVRQIEKRVLKKLRE 263 >UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepID=Q9LD95_ARATH Length = 547 Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 146/256 (57%), Gaps = 4/256 (1%) Query: 75 EEVYFARRALRGDV----ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRA 130 E + + L+ D+ +SR ++I +NLRLVV IA++Y NRGL DL++EG++GL+++ Sbjct: 288 EAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKS 347 Query: 131 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLD 190 VEKF P+ G RF+TYA WWIRQ+I ++I +RTIRLP ++ L + + + Sbjct: 348 VEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGN 407 Query: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT 250 + PS EE+A + + + ++L S+ P+ D + +I D P + Sbjct: 408 YRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSV 467 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310 M+ + L L+ K+R ++ RFG+ G + +L ++G GL++ERVRQ++ L Sbjct: 468 GKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRAL 527 Query: 311 RRLREILQTQGLNIEA 326 RL++ + + GL+ A Sbjct: 528 YRLKQNMNSHGLHAYA 543 >UniRef50_A4AF82 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=A4AF82_9ACTN Length = 1108 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 103/283 (36%), Positives = 149/283 (52%), Gaps = 31/283 (10%) Query: 69 PLLTAEEEVYFARRALRG-------DVASRR----------------------RMIESNL 99 PLL+A++EV AR G D+ RR R SN Sbjct: 633 PLLSADQEVLLAREIEAGLFAQEQFDLLDRREQRSPSGRELQWVAKNGEKAFARFAASNY 692 Query: 100 RLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM 159 RLV IARRY N GL DLI+EG LGL+RA++KFD +GF+FSTYATWW+RQ I RA+ Sbjct: 693 RLVFSIARRYVNNGLDYADLIQEGALGLLRAIQKFDYMKGFKFSTYATWWVRQAITRALA 752 Query: 160 NQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERI 219 + TIR+P+H+V++ N + AR + D +P+ E+A + D SR L Sbjct: 753 DLGSTIRIPVHMVEQQNKLRQAARSFELQNDRKPTISELAAGAEVTEQDASRALGYEYSF 812 Query: 220 TSVDTPL-GGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRF 278 S+D L G+ +L ++L DE P D + + ++ L L ++ + RF Sbjct: 813 LSIDKELDPGEGFGSLHNLLVDESV-APVDLLIHAEFRGAMNNVLSALPKRESTTIQMRF 871 Query: 279 GLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 G+ G + ATL+ +G G+TRER+RQI+ + + LR + QG Sbjct: 872 GIGGQDPATLDHIGDIFGVTRERIRQIEKKTMESLRSSAEVQG 914 >UniRef50_B4U904 RNA polymerase sigma factor n=5 Tax=Aquificales RepID=B4U904_HYDS0 Length = 311 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 161/289 (55%), Gaps = 38/289 (13%) Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 Y+ + LLT +EE FA+RA GD + + ++E+NLR VV +A++Y G+ L +LI Sbjct: 13 YMKRVSSVKLLTPQEEKEFAKRAKAGDKEALKALVEANLRFVVSVAKQYMGYGIPLSELI 72 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI---HIVKELNV 177 GNLGL+ A +FDP++ +F +YA WW+RQ I +A+ QT +R+P+ H++ + + Sbjct: 73 AAGNLGLLEAATRFDPDKNVKFISYAVWWVRQAIMQALSQQTGAVRIPVKHSHLISAVGL 132 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDK--------------PVD---------------- 207 EL +L+ EP+ +EIA+ ++K P + Sbjct: 133 ---AYNELLKELEREPTYKEIADYINKKNIIREFKKETGFAPTEEELEQSMTQEHKYTVT 189 Query: 208 --DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE 265 DV + L++ + S+DTP+G + + +D+L+ + E+ D +++ + + + Sbjct: 190 EEDVKKCLQICKTPLSLDTPVGDNPDTLFVDLLSISDTDEIEEGVIKDVLEKELHDIISK 249 Query: 266 LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 L K+R+VL R+GL G E TL ++G +G++RERVRQ++ +++LR Sbjct: 250 LPEKERKVLELRYGLNGNEPLTLREIGDALGISRERVRQLETRAIKKLR 298 >UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma mobile RepID=Q6KI01_MYCMO Length = 488 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/273 (32%), Positives = 160/273 (58%), Gaps = 17/273 (6%) Query: 58 TQLYLGEIG-YSPLLTAEEEVYFAR-----RALRGDVASRRRMIESNLRLVVKIARRYGN 111 + Y+ +G + +L EEE+ +++ R R + +I NLRLV+ A++Y N Sbjct: 201 VKWYMSWVGKHGKVLDKEEEIKYSKQIEEDRNGRKGKKAFNALIHHNLRLVINNAKKYKN 260 Query: 112 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 171 RGL+ +DLI EGN GLI+A K+D RGF+FSTYATWW+RQ I RA+ +Q R +R+P+H+ Sbjct: 261 RGLSFIDLISEGNAGLIKAATKYDYRRGFKFSTYATWWVRQAITRAVADQARIVRVPVHM 320 Query: 172 VKELNVYLRTARELSHKLDHEPSAEEIAEQLDK--PVDDVSRMLRLNERITSVDTPLGGD 229 V+ +N ++ REL +L P+ ++IAE+ + V + ++N S+D +G D Sbjct: 321 VETINKIIKIERELHQELGVPPTDKQIAEKYGNNFTAEKVQYIRKINIDPISLDKSIGKD 380 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWL-FELNAKQREVLARRFGLLGYE---- 284 + + D + DE P + +++ + L L+ +R+++ +RFG +G + Sbjct: 381 DDSSFSDFVKDESVVSPLEFASQNELSGILTDILEKHLDEAERDLIKKRFG-IGVDKDGN 439 Query: 285 ---AATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + +LE++ E+ +++E+VR ++ + LR+L+ Sbjct: 440 RISSHSLEELAAELQISKEKVRSLESKILRKLK 472 >UniRef50_C7LZN3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZN3_ACIFD Length = 294 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 128/226 (56%) Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 A+R R +E N+ LVV IARRY G++L DL++EG +GL+RA++ +D RGFRFSTYATW Sbjct: 55 AARERFVEGNMGLVVSIARRYVQPGISLDDLVQEGTIGLLRAIDLYDGRRGFRFSTYATW 114 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I +A+ R + LP I EL REL L +PS E+A Sbjct: 115 WIRQAIAQALTRTRRDVVLPRGIAAELARVEVQRRELEQALGRQPSMAELAAASGIDELR 174 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V + + S+D +G + + L DI+ D E+T + D++ I L L Sbjct: 175 VRELQGYARSVLSLDQAVGEERDVTLADIVPDRDAEPIEETIEHADLRTVIAGALAHLEP 234 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++REVLA RFGL G E +LED G+ RER+RQI+ + RLR Sbjct: 235 REREVLAFRFGLEGNEPHSLEDAAAYFGIARERIRQIEARAIARLR 280 >UniRef50_C1DVG2 RNA polymerase sigma factor n=4 Tax=Hydrogenothermaceae RepID=C1DVG2_SULAA Length = 285 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 94/267 (35%), Positives = 147/267 (55%), Gaps = 6/267 (2%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 + + Y+ I PLLT E+E + GD + +++I SNLR V+ IA+RY G+ Sbjct: 8 EGVEYYIRSIYKIPLLTPEQEKEILEKIKLGDKEAFQKLILSNLRFVINIAKRYAGYGIP 67 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 L DLI GN+GLI A ++FDP +G +F +YA WWI+Q+I + + IR P I Sbjct: 68 LQDLISAGNIGLIEAAKRFDPSKGVKFISYAIWWIKQSIINTLSQEGDIIRKPTKIQSLF 127 Query: 176 NVYLRTARELSHKLDHEPSAEEIA-----EQLDKPVDDVSRMLRLNERITSVDTP-LGGD 229 L L+ EPS +EI E L+ D + L N+ S+D P L D Sbjct: 128 QKISNAYFYLKDSLNREPSVDEIHSFLLREGLEVEKDTIENYLFFNQHFISLDEPILSQD 187 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLE 289 + L D +++ E D+D+ + I + L L+ +++++L RFGL G E TL+ Sbjct: 188 EDIHLSDTISNSGTEDIERKLIDEDILKFIDELLDTLSPREKQILIHRFGLYGEEPKTLK 247 Query: 290 DVGREIGLTRERVRQIQVEGLRRLREI 316 +VG +G++RERVRQI++ L++LR++ Sbjct: 248 EVGNIVGISRERVRQIEIRLLKKLRKL 274 >UniRef50_A9GLY8 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GLY8_SORC5 Length = 446 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 143/233 (61%), Gaps = 1/233 (0%) Query: 82 RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 R R ++ ++++NLRL V IAR + G+ LLDL++EGNLGLIRA +KF+ RG R Sbjct: 201 RGRRAVAQAKSELVQANLRLAVAIAREHQRFGVPLLDLVQEGNLGLIRAADKFEYRRGHR 260 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 F TYA WWI+Q I+R I+NQ + +R+P+H+ + +R R+L + EPS EEIAE+ Sbjct: 261 FGTYAAWWIKQAIKRTILNQGKPVRMPVHLTAIRSQVVRARRDLVQERGREPSVEEIAER 320 Query: 202 LDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 V+ V + L S+D P+G + + D+LA++ E P D + + + Sbjct: 321 SGLTVEKVRVISELALEPLSLDAPVGEEGDTRYGDLLAND-EPTPADMLARRRLIEQTRE 379 Query: 262 WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 L L ++RE+L RRFGL G E TLE++G+ LTRER+RQI+ + L +LR Sbjct: 380 LLDSLQPRERELLRRRFGLDGNEDETLEEIGQSFSLTRERIRQIEAKLLEKLR 432 >UniRef50_D1AXM9 RNA polymerase sigma factor n=5 Tax=Fusobacteriaceae RepID=D1AXM9_STRM9 Length = 280 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/265 (34%), Positives = 158/265 (59%), Gaps = 4/265 (1%) Query: 55 LDATQLYLGEIGYSPLLTAEEEV-YFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG 113 ++ LY+ ++ LLT+EEEV F R D ++ +I SNLRLVV A++ G Sbjct: 13 INLISLYISDLQNHELLTSEEEVELFKRVREENDEQAKHLLILSNLRLVVSEAKKLLGNG 72 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 + L+DLI EGNLGLI++++KFD +G RFSTYA WWI+QTI+++I+N R IR+P + + Sbjct: 73 MPLIDLISEGNLGLIKSIDKFDYTKGLRFSTYAVWWIKQTIKKSIVNLGRDIRIPSYKYE 132 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 +L+ + ++ P+AE IAE L V + + I S++ +G + Sbjct: 133 QLSKVNKVIESYQNEFGDIPTAEYIAEVLGMKPSKVVLLQNEFQEIISLNDAIG---DNI 189 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 L+ + + +N +D ++D + + + LN +++E+L R+GL + TL+++G Sbjct: 190 FLEDVIGQSDNVEDDIIRNDQLSEMYNLFDKTLNPREKEILELRYGLANNKIHTLKEIGE 249 Query: 294 EIGLTRERVRQIQVEGLRRLREILQ 318 ++ +TRERVRQI+ + + +L++ L+ Sbjct: 250 KLSITRERVRQIEKKAITKLKKNLE 274 >UniRef50_Q4A5V6 RNA polymerase sigma factor n=3 Tax=Mycoplasma RepID=Q4A5V6_MYCS5 Length = 798 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 161/280 (57%), Gaps = 21/280 (7%) Query: 56 DATQLYLGEIG-YSPLLTAEEEVYFARRALRGDVASRRR---MIESNLRLVVKIARRYGN 111 D + Y+ IG Y LLT +EE A +G +R +I+ NLRLVV A++Y N Sbjct: 500 DIVKWYMRWIGKYGKLLTPQEEKDLAEEMDKGGSRGKRARDLIIKRNLRLVVNAAKKYKN 559 Query: 112 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 171 RGL+ +DL+ EGN GL++A +KFD ++GF+FSTYATWWIRQ+I RA+ +Q R IR+P+H+ Sbjct: 560 RGLSFIDLVSEGNAGLLKAAQKFDIKKGFKFSTYATWWIRQSISRAVADQARIIRVPVHM 619 Query: 172 VKELNVYLRTARELSHKLDHEPSAEEIAEQL---DKPVDD--VSRMLRLNERITSVDTPL 226 V+ +N + RE+ + E EEIA +L K D + + ++N S+D + Sbjct: 620 VETINKIYKIEREIQQENGGEIIDEEIAARLGGKSKKYDASYIRYIRKINTSPISLDKQV 679 Query: 227 GGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA- 285 G +++ D + DE P + +++ I ++ +L ++ L +R+ +GY+A Sbjct: 680 GKENDSFFGDFVKDESIISPVEFADKEELITKINYYVEKLLSEAEADLIKRYHGIGYDAK 739 Query: 286 ------ATLEDVGREI-----GLTRERVRQIQVEGLRRLR 314 ATL+++ ++ +++ERVRQI + ++LR Sbjct: 740 GNPVRSATLDEISKDFRGEGKKISKERVRQIITKIYKKLR 779 >UniRef50_A9G730 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G730_SORC5 Length = 463 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 132/228 (57%), Gaps = 1/228 (0%) Query: 95 IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 154 + +NLRLV AR+ +RG+ LLDLI+EGNLGLIRA EKFD RG+RFSTYA WWI+Q + Sbjct: 231 VRANLRLVAAAARQLRHRGVPLLDLIQEGNLGLIRAAEKFDYRRGYRFSTYAMWWIKQAL 290 Query: 155 ERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR 214 RA++ Q + IR+P+HI + L+ REL + E + EE+AE+ ++ + + Sbjct: 291 SRALLYQGQVIRVPVHIAETRRRALQARRELEQEHAREAAPEEVAERSGLSMEKLQALRE 350 Query: 215 LNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVL 274 + +D P+G D D A E P++ + + L L ++R+VL Sbjct: 351 MALPPVYLDAPVGDDDGARQGDFFASEG-AAPDELLVHRRLHAQVSALLESLTPRERDVL 409 Query: 275 ARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 RFGL G + TL ++G ++RERVRQI+ L +LR + + Q L Sbjct: 410 RLRFGLDGGQPHTLAEIGGMFSVSRERVRQIEESALSKLRTLSRRQAL 457 >UniRef50_C0ZIC6 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZIC6_BREBN Length = 314 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 96/267 (35%), Positives = 153/267 (57%), Gaps = 15/267 (5%) Query: 60 LYLGEIGYSPLLTAEEEVYFARRALR-GDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 L+L + +P+L EEE+ R R GD+ +R ++ + LR VV A R+ RG+ LD Sbjct: 38 LFLESVAATPMLDKEEELACLIRYQRDGDLEARETIVRAYLRYVVSTALRHLKRGMPFLD 97 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI+EG +GL A++KFD RG R Y+ WWI Q I RAI ++ IR+P+H+ +++ Y Sbjct: 98 LIQEGTIGLFTAIDKFDVGRGVRLYHYSHWWISQAITRAINDKATLIRIPVHMHEQIRQY 157 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGDSEK----- 232 + L H L+ P +EIA LD P++ V + L L ++ S+D L DSEK Sbjct: 158 QKQVLHLVHALNRTPDRQEIAVLLDIPLEKVEAIELALMMKMESIDAEL--DSEKWQTWH 215 Query: 233 -----ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 + +I+ D+ + +D + D++ + L L+ + +E+++ R+GL + T Sbjct: 216 EDESLSYAEIM-DDGLSSLDDWIEKVDLRSQMRAALDRLSPRAQEIISMRYGLYDDQVYT 274 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLR 314 LE+VG+ GLTRER+RQI+ + RLR Sbjct: 275 LEEVGKMFGLTRERIRQIEATTIDRLR 301 >UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKA7_9BACT Length = 301 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/258 (34%), Positives = 148/258 (57%), Gaps = 7/258 (2%) Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 YL I +T +E R GD + +I NL+ VV IA RY N GL + D+I Sbjct: 36 YLNSISAYKPMTKAQEFAIGERIQAGDEDALNTLILCNLKFVVSIANRYRNTGLPIADII 95 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 +GNLGL+ A ++FD + +F +YA WWIRQ+I +A+ Q+ T++LPI L Sbjct: 96 NQGNLGLVEAAKRFDHTKDVKFISYAVWWIRQSIIQALAEQSGTVKLPIKQAGILYKING 155 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD 240 +L+ KL+ EP+A E+AEQL+ D+ +LR++ S++ P+ +++ +D+L Sbjct: 156 ATEKLNKKLNREPTASELAEQLEMDEADIENVLRVSRNYLSLEAPIKDGEDRSFIDLL-- 213 Query: 241 EKENGPEDTTQD---DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 E+G +D +D +K ++ + EL+ ++ +++ RFGL TLE++G + + Sbjct: 214 --ESGTKDIEEDIISKTLKTALDDIVDELDERESQIIEWRFGLNEEAPKTLEEIGELMDI 271 Query: 298 TRERVRQIQVEGLRRLRE 315 +RERVRQ++ L +LR+ Sbjct: 272 SRERVRQLETRALSKLRK 289 >UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderiales RepID=B1K0Z2_BURCC Length = 857 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 139/233 (59%), Gaps = 4/233 (1%) Query: 83 ALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 142 A++ +R RM +NL+LV +A++Y G L DL +EGN+GL++AVE+FD RGF+F Sbjct: 508 AMKAYQLARERMAVANLKLVFHLAKKYRYSGEPLDDLAQEGNIGLLKAVERFDWRRGFKF 567 Query: 143 STYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL 202 STYATWWIRQ I R + ++ RT+R+P+H+ ++ R + L + P EIA +L Sbjct: 568 STYATWWIRQQIGRHLADKCRTVRVPVHVHEKAQRLSRETQALESETGRAPELHEIAARL 627 Query: 203 DKPVDDVSRMLRL-NERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 + V V+ + RL E + + P+ E +++ +D P D ++ ++I K Sbjct: 628 NMAVQKVAELQRLAPEPLPIHELPI---DELIAVEVRSDFVSPDPMDIVSKSELLETIDK 684 Query: 262 WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 L L K+ + L RFG+ EA TLE++G + G+TRERVRQI+V LR L+ Sbjct: 685 LLSTLKPKEEQTLRLRFGIGVEEALTLEEIGCQYGVTRERVRQIEVAALRNLK 737 >UniRef50_A3ZWN2 RNA polymerase sigma factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWN2_9PLAN Length = 516 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 92/235 (39%), Positives = 140/235 (59%), Gaps = 14/235 (5%) Query: 86 GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTY 145 G ++R + +NLRLVV IA+ + RGL+ LDLI+EGNLGL+RAVEKFDP G++F+TY Sbjct: 267 GLCRAQRAITSANLRLVVSIAKSFRGRGLSYLDLIQEGNLGLMRAVEKFDPSLGYKFATY 326 Query: 146 ATWWIRQTIERAIMNQTRTIRLPIHI---VKELNVYLRTARELSHKLDHEPSAEEIAEQL 202 ATWWIRQ + + + +Q RTIRLP + ++++NV LS + EP E A+Q Sbjct: 327 ATWWIRQAVMKGLADQGRTIRLPARMQDRIQKINVAKAI---LSQEHRSEPPIELTAKQA 383 Query: 203 DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD--MKQSIV 260 + +V RL I S+D D D D +G + + D+ + +I Sbjct: 384 ELTEREVVAADRLGRTIMSLDVSNNDD------DSFGDTLASGDAEQSSADEQRLPLAIN 437 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 + L EL ++++E++ RRFG+ TLE+V + +TRER+RQI+ +R+LR+ Sbjct: 438 QLLQELTSREQEIVRRRFGMFDGRVQTLEEVSQAFSVTRERIRQIESAAIRKLRQ 492 >UniRef50_A6ECH2 RNA polymerase sigma factor n=2 Tax=Pedobacter sp. BAL39 RepID=A6ECH2_9SPHI Length = 288 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/270 (34%), Positives = 151/270 (55%), Gaps = 1/270 (0%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 +S+ T R D+ + YL EI LL EEEV A GD A+ +++ +NLR VV + Sbjct: 6 ISKSITDRGGDSLEKYLSEISKIELLNVEEEVRLASIVREGDRAALDKLVSANLRFVVSV 65 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A+ Y + GL L DLI EGNLGLI+A ++D +GF+F ++A WWIRQ+I AI +Q R I Sbjct: 66 AKNYQDMGLRLADLISEGNLGLIKAASRYDHTKGFKFISFAVWWIRQSITYAIADQHRMI 125 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 RLP + + + RT+ L KL+ PS EE+AE LD P V + TS+D P Sbjct: 126 RLPGNQIVGITRLNRTSDLLEQKLERRPSLEEVAEALDLPETKVVDYQMSALKTTSLDMP 185 Query: 226 -LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYE 284 L G+ ++ + + + + +++ + L L +++++L+ +GL G Sbjct: 186 ILLGEPGTTFGHMIRNSEVEAADAVLDRQSLAENVRRLLSILPPREQKILSLYYGLGGMP 245 Query: 285 AATLEDVGREIGLTRERVRQIQVEGLRRLR 314 LED+ L++ER+RQ++ + ++ L+ Sbjct: 246 QTRLEDMVPVFHLSKERLRQLKDKAVKTLK 275 >UniRef50_UPI0001BC2D98 RNA polymerase, sigma 32 subunit, RpoH n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2D98 Length = 903 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 117/328 (35%), Positives = 169/328 (51%), Gaps = 42/328 (12%) Query: 6 LKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEI 65 L DL + + DE K +V + +D+D +E L S T +L +YL +I Sbjct: 534 LLAEDLPDQSGADEQPAS----KKIVLVKDADDDEPQELLRSVTDTDDLLG---VYLKQI 586 Query: 66 GYSPLLTAEEEVYFARRALRGDVASR------------RR---------------MIESN 98 G PLL+A EEV A+R G A+ RR M+ SN Sbjct: 587 GQYPLLSAAEEVAVAKRIEAGMYATHVLSLGQYQTRRERRALEWVKADGAAAYEEMVTSN 646 Query: 99 LRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAI 158 LRLVV IA+R+ L LLDLI+EGNLGL+RAV+KFD +G +FSTYATWWIRQ I+R I Sbjct: 647 LRLVVSIAKRFNRSKLDLLDLIQEGNLGLVRAVQKFDYTKGNKFSTYATWWIRQGIDRGI 706 Query: 159 MNQTRTIRLPIHIVKELNVYLRTAR--ELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLN 216 + +TIRLPIH+ ++ + + R E DH+ S E A ++ +PV + L L Sbjct: 707 GDTAKTIRLPIHLFEKASEFWNCMRDDESRAACDHDHSKVEQALRM-QPV-SLEGYLELQ 764 Query: 217 ERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLAR 276 ++ + D A D+ D PE D ++ +++ + L A++ E++ R Sbjct: 765 WDGHYAESLMSFDDRIADPDVFTDN----PETKIVDGELLETVNSVVDSLPAREAEIIRR 820 Query: 277 RFGLLGYEAATLEDVGREIGLTRERVRQ 304 RFG G TL+ +G +TRER+RQ Sbjct: 821 RFGWNGEPPQTLDAIGNRFAVTRERIRQ 848 >UniRef50_Q3AYF6 Possible type II alternative RNA polymerase sigma factor n=26 Tax=Cyanobacteria RepID=Q3AYF6_SYNS9 Length = 309 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 159/300 (53%), Gaps = 42/300 (14%) Query: 61 YLGEIGYSPLLTAEEEVYFARRA-----------------------------LRGDVASR 91 +LGEIG LLT E+E+ R+ +R ++ Sbjct: 9 FLGEIGRHQLLTPEQELMLGRKVQAMVAITEPCLIAGGTGPSCEYNDNQRFVIRRGERAK 68 Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 151 +MI +NLRLVV +A+RY +GL LLDLI+EG LGL RAVEK+DP RG RFSTYA WWIR Sbjct: 69 NQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTYAYWWIR 128 Query: 152 QTIERAIMNQTRTIRLPIHIVKELNVYLRTAR-ELSHKLDHEPSAEEIAEQLDKPVDDVS 210 Q + RA+ Q+RTIR+P+++ ++L LR A+ + + + E++AE ++ P+ +V Sbjct: 129 QGLNRALSTQSRTIRIPVNVNEKLT-KLRAAKARIMQRNGLTATGEQLAEFMNVPLTEVE 187 Query: 211 RMLRLNERITSVDTPLGG-----DSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE 265 +L R SV L G L+DIL + E P + + + S+ L + Sbjct: 188 DLLACELR--SVTVSLQGIVKSKSDPSELVDILPSD-EIPPMERAEIAERSASVWALLSK 244 Query: 266 LN--AKQREVLARRFGLLGY-EAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 N K+ +V+ RFGL G E TL +V R + +RE RQ+ LR+LR+ GL Sbjct: 245 ANLTPKEHKVVTLRFGLDGTNEWRTLAEVARHMNCSREYCRQVVQRALRKLRKTGIQSGL 304 >UniRef50_D1HUY6 Whole genome shotgun sequence of line PN40024, scaffold_64.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HUY6_VITVI Length = 319 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 132/227 (58%), Gaps = 2/227 (0%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 SR R+ +S RLVV IA RY +GL+L DLI+EG++GL+R E+FDP+RG++ STY WW Sbjct: 82 SRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWW 141 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARE-LSHKLDHEPSAEEIAEQLDKPVDD 208 IRQ I RAI N++R IRLP I E+ + AR LS +L P+ +EIAE +D V Sbjct: 142 IRQAIVRAIANKSRIIRLPGSIC-EMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVST 200 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V + + SVD + L +I+ E P+ + MKQ + + L L Sbjct: 201 VRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCE 260 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 ++ +L FG+ G + E++GR + L+RERVRQI L +LR+ Sbjct: 261 REAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQ 307 >UniRef50_Q9ZSL6 Sigma-like factor n=2 Tax=Arabidopsis thaliana RepID=Q9ZSL6_ARATH Length = 419 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 131/235 (55%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +R ++ RLVV IA Y +GL L DLI+EG++GL+R E+FDP+RG++ STY WW Sbjct: 179 AREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWW 238 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 I+Q I RAI +++R ++LP + + + L+ KL +PS EEIAE L+ V V Sbjct: 239 IKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAV 298 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + + S+D + L +I+ E PE+ + + MK I + L L A+ Sbjct: 299 RLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTAR 358 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNI 324 + VL FGL G + E++G+ + L+RERVRQI L++LR + L I Sbjct: 359 ESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKI 413 >UniRef50_A5GV05 Alternative RNA polymerase sigma factor, sigma-70 family n=1 Tax=Synechococcus sp. RCC307 RepID=A5GV05_SYNR3 Length = 293 Score = 153 bits (386), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 101/292 (34%), Positives = 153/292 (52%), Gaps = 36/292 (12%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFAR---------------------RALRGDVASRRRM 94 D L IG LL+ EEEV R R LR +R R+ Sbjct: 7 DCFGWMLNGIGRHALLSPEEEVSLGRQVRAWQDHPGGPGQAPAAVQKRGLR----ARGRL 62 Query: 95 IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 154 +++NLRLVV +A++ RGLA+ DL++EG++GL RA EK+DP G+RFSTYA WWI+Q + Sbjct: 63 VQANLRLVVHLAKKQHLRGLAMEDLVQEGSIGLQRAAEKYDPSTGYRFSTYAYWWIKQAL 122 Query: 155 ERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR 214 RAI QT +RLP + + L T + LS +L +P EE+AE + + +D + + R Sbjct: 123 HRAIQLQTPALRLPCRVSERLGRLRSTRQRLSQELGRQPRPEELAEAMGERIDQLQELER 182 Query: 215 LN--ERITSVDTPLGGDSEK-ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQR 271 R S+DTP+G D + +L+D+L D++ + P D + + + + L +R Sbjct: 183 AQVISRGCSLDTPMGSDPDHGSLVDLLEDDRTS-PMDQLEQALRSEQLAELLSSAGLSER 241 Query: 272 E---VLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 E V AR E + + G++RER RQ++ LR+LR + Q Sbjct: 242 EATVVQARH----SEEHIPYQQLADRFGISRERTRQLEHNALRKLRHCAEAQ 289 >UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q116K5_TRIEI Length = 496 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 139/227 (61%), Gaps = 8/227 (3%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ +M+ +NLRLV +A+RY NRGL DLI+EG +GL+RA EKFD +G++FSTY WW Sbjct: 261 AKNQMVTANLRLVTSVAKRYQNRGLDFQDLIQEGVIGLLRATEKFDHTKGYKFSTYGIWW 320 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP-SAEEIAEQLDKPVDD 208 IRQ I RAI + +R +RLP+++ + ++ + +++S ++ P +AEE+A +++ + Sbjct: 321 IRQAITRAICDYSRIVRLPVYLYETISQIKKIVKQIS--IECSPLTAEEVATRMEMTTEK 378 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENG--PEDTTQDDDMKQSIVKWLFEL 266 + ++ + S+D P+ +++ K NG P ++ +++ + L L Sbjct: 379 LQFIIECAQETLSLDYPINKGENIIYKEMI---KFNGETPTKYVFENCLQEDVESVLKTL 435 Query: 267 NAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 ++R VL RFGL + TL+++G LTRER+RQI+ + LR+L Sbjct: 436 TERERNVLQMRFGLDDGQEKTLKEIGDTFNLTRERIRQIEAKALRKL 482 >UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, scaffold_24.assembly12x (Fragment) n=3 Tax=Magnoliophyta RepID=D1J322_VITVI Length = 575 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 141/242 (58%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 RR + + +MI+SN+RLV+ IA+ Y G+ + DL++EG GL+R EKFD +GF Sbjct: 328 RRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGF 387 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYA WWI+Q + +++ +Q+RTIRLP H+V+ ++L + P+ EE+AE Sbjct: 388 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 447 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 + ++ +L + S+D +G + +++AD E+ M++ + Sbjct: 448 ATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLE 507 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 K L LN ++++V+ R+GL TL+++G +G++RER+RQI+ R+L+ +T+ Sbjct: 508 KVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTK 567 Query: 321 GL 322 L Sbjct: 568 HL 569 >UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q7XXT0_ORYSJ Length = 564 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 133/234 (56%), Gaps = 1/234 (0%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 R+ L + + RM+ SN+RLV+ IAR + G+ L DLI+EG GLIR EKFD +GF Sbjct: 314 RKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGF 373 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 RFSTY+ WWI+Q + +++ Q++ RLP H+V+ + L KL P+ EEIA Sbjct: 374 RFSTYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAA 433 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 P+ V + L + S+D+ + G ++ ++ AD E+ MK+ + Sbjct: 434 DTGMPIKRVEAAVNLPKYSVSLDSKI-GSTDMTYQEVTADPTAETAEEMLNRLSMKRDVH 492 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 K L L ++R+V+ RFGL TL+++G +G++RER+RQI+ R+LR Sbjct: 493 KALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLR 546 >UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID=O22455_ARATH Length = 574 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 131/222 (59%) Query: 93 RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQ 152 +MI+SN+RLV+ IA+ Y G+ L DL++EG GL+R EKFD +GF+FSTYA WWI+Q Sbjct: 337 KMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQ 396 Query: 153 TIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM 212 + +++ +Q+R IRLP H+V+ ++L + P EEIAE + + + Sbjct: 397 AVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAV 456 Query: 213 LRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQRE 272 L + S+D +G + +++AD + ED + M+Q + K L L ++++ Sbjct: 457 LLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQ 516 Query: 273 VLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 V+ RFG+ TL+++G +G++RERVRQI+ R+L+ Sbjct: 517 VIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 558 >UniRef50_Q4BV73 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4BV73_CROWT Length = 386 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 147/233 (63%), Gaps = 6/233 (2%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ +MI++NLRLVV ++++Y +GL +DL+ EGNLGLIRAVEKF+ ++G++FSTYA W Sbjct: 23 AKEKMIQANLRLVVAVSKKYQGKGLEFMDLVSEGNLGLIRAVEKFEYDKGYKFSTYAYHW 82 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ + RAI ++ RTIR+P+HI +E++ + E+ K + E++E+L+ + + Sbjct: 83 IRQALVRAICDKGRTIRVPVHINEEISKLKKVQLEIRQKYGRSATVRELSERLEISPEKI 142 Query: 210 SRMLRLNERITSVDTPLGGDSEKA-LLDILADEKENGPEDTTQDD-DMKQSIVKWLFELN 267 + +N + S+D + GD + + LL LAD NG D+ K+ + + L L Sbjct: 143 RVLRSVNNPMLSLDQKVLGDEDNSTLLSFLAD--PNGDLQKFLDNLGNKELVEQCLCGLK 200 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 +++ VL + L + TL ++G+++ L+RERVR I+ L +L++++ T+ Sbjct: 201 PQEQRVLREYY--LETPSLTLNEIGKKMNLSRERVRHIKNNALDKLKQVIVTE 251 >UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TX3_RHOFD Length = 726 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 139/231 (60%), Gaps = 12/231 (5%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +R +M+ +NL+LV+ IA++Y G L DL++EGN+GLI+AV+++D RGF+ STYATWW Sbjct: 371 ARDQMVIANLKLVLFIAKKYLYSGQPLDDLLQEGNIGLIKAVDRYDWRRGFKLSTYATWW 430 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ + R + ++++TIRLP+H+ + A + P+ EEIA++++ P V Sbjct: 431 IRQQVGRYVADKSKTIRLPVHVYVKTQQIAHAAHAIELATGRMPTIEEIAKKMEMPASKV 490 Query: 210 SRM-LRLNERITSVDTPLGGDSEKALLDILADEKEN----GPEDTTQDDDMKQSIVKWLF 264 + + L + E + P+ +L+ I D ++N P D D + SI ++L Sbjct: 491 APLALAIPEPL-----PIHDVDVDSLIAI--DAQDNYVARDPMDIVSDSQLIGSIDRFLA 543 Query: 265 ELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 L K +VL RFG+ +EA TLE++G + +TRER+RQI+ + + L+ Sbjct: 544 TLKPKDEQVLRLRFGIGAHEAMTLEEIGTRLEVTRERIRQIEAKAICHLKH 594 >UniRef50_B0VH07 RNA polymerase sigma factor n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH07_9BACT Length = 292 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 99/275 (36%), Positives = 158/275 (57%), Gaps = 26/275 (9%) Query: 57 ATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLAL 116 A Q YL EI L+ EEE A +A GD+ + ++I++NL+ VVKIA RY NRGL+L Sbjct: 12 ALQNYLNEISKFKTLSREEEHDLAIKAKNGDMDAMNKLIQANLKFVVKIASRYQNRGLSL 71 Query: 117 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI------H 170 +LI EGN+GLI+A+EKFDP++ + +YA WWI+Q I A+ ++ IR+P+ H Sbjct: 72 SELISEGNIGLIKAIEKFDPDKDIKLISYAIWWIKQRIMLAVSEKSSLIRVPMGKSSAAH 131 Query: 171 IVK--ELNVYLRTAR-----ELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVD 223 VK + + T + ELS K++ AE+ EQL + + S ++ IT+ D Sbjct: 132 RVKLTQDRYFTETGKIATPDELSEKMN---IAEKTIEQLQNKLPETS---SFDDIITTSD 185 Query: 224 TPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL-G 282 + + D+L D+ P+ + M++ I + +L+A++ E++ FGL Sbjct: 186 S-----QDFTAKDLLEDKDTLDPQSLYYQERMQEKIQNAISKLDAREAEIIRNYFGLNES 240 Query: 283 YEAATLEDVGREIGLTRERVRQIQVEGLRR-LREI 316 +E+ + ++GL+RERVRQIQ E L++ +REI Sbjct: 241 HESRNFAQIAEKLGLSRERVRQIQKEALKKIMREI 275 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Prote... 430 e-119 UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia ... 381 e-104 UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmic... 377 e-103 UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacter... 376 e-103 UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacte... 374 e-102 UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 374 e-102 UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia R... 373 e-102 UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria Re... 372 e-102 UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacter... 372 e-101 UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria Re... 370 e-101 UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermot... 369 e-101 UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella ... 368 e-100 UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacter... 362 1e-98 UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria Rep... 357 2e-97 UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteo... 353 4e-96 UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter ... 352 1e-95 UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi... 349 1e-94 UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Strep... 347 2e-94 UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actino... 347 3e-94 UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium ... 344 2e-93 UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacter... 344 2e-93 UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium ... 341 2e-92 UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 340 3e-92 UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexac... 340 4e-92 UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 339 6e-92 UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 339 1e-91 UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria R... 337 4e-91 UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 T... 335 9e-91 UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivi... 334 3e-90 UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD su... 333 4e-90 UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi ... 332 1e-89 UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/V... 331 2e-89 UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria Rep... 331 2e-89 UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellul... 330 3e-89 UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiell... 330 3e-89 UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 330 5e-89 UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister in... 329 6e-89 UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmatac... 329 8e-89 UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomyceta... 329 9e-89 UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea... 329 1e-88 UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria Re... 329 1e-88 UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobaci... 328 1e-88 UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. ... 328 2e-88 UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicro... 328 2e-88 UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteo... 327 2e-88 UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomyceta... 327 3e-88 UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacter... 327 3e-88 UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacte... 327 4e-88 UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteo... 325 1e-87 UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermob... 325 1e-87 UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 325 1e-87 UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothr... 325 2e-87 UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia bal... 325 2e-87 UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacter... 324 2e-87 UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci R... 324 3e-87 UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium ... 324 3e-87 UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellu... 324 3e-87 UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicro... 324 4e-87 UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphapr... 323 6e-87 UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria Re... 323 7e-87 UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteob... 322 2e-86 UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily... 321 2e-86 UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteri... 321 2e-86 UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 321 2e-86 UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Prote... 320 3e-86 UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 320 4e-86 UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacteri... 320 4e-86 UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 320 4e-86 UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicro... 320 4e-86 UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae ... 320 4e-86 UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 320 5e-86 UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Prote... 319 6e-86 UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromo... 319 1e-85 UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacter... 318 1e-85 UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptospora... 318 1e-85 UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogace... 318 1e-85 UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 318 2e-85 UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteob... 318 2e-85 UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasma... 318 2e-85 UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular or... 317 4e-85 UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 317 4e-85 UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 317 4e-85 UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes... 317 4e-85 UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi ... 315 1e-84 UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsu... 315 1e-84 UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundu... 315 2e-84 UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamy... 315 2e-84 UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyano... 314 2e-84 UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteo... 314 2e-84 UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 313 6e-84 UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi ... 313 7e-84 UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E... 313 7e-84 UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrel... 312 9e-84 UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacter... 312 1e-83 UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma ... 312 1e-83 UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 312 1e-83 UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellul... 312 1e-83 UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter ... 310 5e-83 UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacter... 309 7e-83 UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema Re... 309 9e-83 UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacteri... 309 1e-82 UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax... 308 2e-82 UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia Re... 308 2e-82 UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacte... 308 2e-82 UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria Re... 307 3e-82 UniRef50_B5ES65 RNA polymerase sigma factor n=2 Tax=Acidithiobac... 306 6e-82 UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacter... 305 1e-81 UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia Re... 305 1e-81 UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 305 2e-81 UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter ... 304 3e-81 UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 304 3e-81 UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus... 303 6e-81 UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilo... 303 6e-81 UniRef50_Q3JAH2 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 302 8e-81 UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistip... 302 9e-81 UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma h... 301 2e-80 UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily... 301 2e-80 UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromona... 301 2e-80 UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 301 3e-80 UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 301 3e-80 UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacte... 300 3e-80 UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobact... 300 4e-80 UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 300 5e-80 UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacte... 300 6e-80 UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 299 7e-80 UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 299 8e-80 UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 299 8e-80 UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia... 299 9e-80 UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 299 1e-79 UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteri... 299 1e-79 UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia... 298 2e-79 UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella... 298 2e-79 UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacter... 297 3e-79 UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 297 3e-79 UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily... 297 4e-79 UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria Rep... 297 6e-79 UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes R... 296 6e-79 UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacter... 296 7e-79 UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcale... 296 7e-79 UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycopla... 295 1e-78 UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellul... 294 3e-78 UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycet... 293 4e-78 UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium ... 292 1e-77 UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilo... 292 2e-77 UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular ... 291 2e-77 UniRef50_B2VA41 RNA polymerase sigma factor n=2 Tax=Hydrogenothe... 291 2e-77 UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderi... 290 3e-77 UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 290 3e-77 UniRef50_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydro... 290 4e-77 UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 290 4e-77 UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsi... 290 6e-77 UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteob... 290 7e-77 UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragmen... 289 1e-76 UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 T... 289 1e-76 UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 T... 289 1e-76 UniRef50_Q21UR2 RNA polymerase sigma factor n=5 Tax=Burkholderia... 288 1e-76 UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece R... 287 3e-76 UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 287 4e-76 UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus P... 287 5e-76 UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochlori... 286 7e-76 UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea s... 286 7e-76 UniRef50_A8ZPW9 RNA polymerase sigma-70 factor, putative n=10 Ta... 286 8e-76 UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 285 1e-75 UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=... 285 1e-75 UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 285 1e-75 UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 ... 285 2e-75 UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobi... 285 2e-75 UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus ... 285 2e-75 UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 284 2e-75 UniRef50_B1ZRN1 RNA polymerase sigma factor n=1 Tax=Opitutus ter... 284 4e-75 UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasm... 283 5e-75 UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosipho... 282 9e-75 UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma m... 282 1e-74 UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteri... 281 2e-74 UniRef50_A7MZX8 RNA polymerase sigma factor n=1 Tax=Vibrio harve... 281 2e-74 UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter... 281 3e-74 UniRef50_B4U904 RNA polymerase sigma factor n=5 Tax=Aquificales ... 280 4e-74 UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily... 280 6e-74 UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 280 6e-74 UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 280 7e-74 UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacteriu... 279 7e-74 UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomyceta... 279 8e-74 UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 279 1e-73 UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, s... 277 3e-73 UniRef50_Q4A5V6 RNA polymerase sigma factor n=3 Tax=Mycoplasma R... 277 4e-73 UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroi... 277 5e-73 UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobact... 277 6e-73 UniRef50_C1DVG2 RNA polymerase sigma factor n=4 Tax=Hydrogenothe... 276 8e-73 UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmiu... 276 9e-73 UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, s... 275 1e-72 UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 275 2e-72 UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID... 275 2e-72 UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 275 2e-72 UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera... 274 2e-72 UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 274 3e-72 UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 274 4e-72 UniRef50_A6D4Y7 RNA polymerase sigma factor n=1 Tax=Vibrio shilo... 273 4e-72 UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 T... 273 4e-72 UniRef50_Q5DYR1 RNA polymerase sigma factor n=3 Tax=Aliivibrio R... 273 4e-72 UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepI... 273 6e-72 UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31... 273 7e-72 UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 ... 273 8e-72 UniRef50_C6Y0F4 RNA polymerase sigma factor, sigma-70 family n=1... 273 8e-72 UniRef50_D0YYF5 RNA polymerase sigma factor RpoS n=1 Tax=Photoba... 272 9e-72 UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacter... 272 2e-71 UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus ... 271 2e-71 UniRef50_D1AXM9 RNA polymerase sigma factor n=5 Tax=Fusobacteria... 268 1e-70 UniRef50_A6ECH2 RNA polymerase sigma factor n=2 Tax=Pedobacter s... 268 1e-70 UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium ca... 268 2e-70 UniRef50_Q2JMC5 RNA polymerase sigma factor n=2 Tax=Synechococcu... 267 4e-70 UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 266 6e-70 UniRef50_Q1PZV7 RNA polymerase sigma factor n=1 Tax=Candidatus K... 266 8e-70 UniRef50_Q39477 RNA polymerase sigma factor (Fragment) n=1 Tax=C... 266 9e-70 UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria Rep... 265 1e-69 UniRef50_A5UVI3 RNA polymerase sigma factor n=1 Tax=Roseiflexus ... 265 1e-69 UniRef50_Q6MI57 RNA polymerase sigma factor n=1 Tax=Bdellovibrio... 264 3e-69 UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium o... 264 3e-69 UniRef50_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus K... 264 3e-69 UniRef50_UPI0001BC2D98 RNA polymerase, sigma 32 subunit, RpoH n=... 263 5e-69 UniRef50_A4AF82 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 263 6e-69 UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium o... 263 7e-69 UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderia... 262 1e-68 UniRef50_A9G730 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 262 1e-68 UniRef50_C7LZI2 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 262 1e-68 UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderi... 261 2e-68 UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis ... 261 2e-68 UniRef50_Q9ZSL6 Sigma-like factor n=2 Tax=Arabidopsis thaliana R... 260 5e-68 UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis... 258 1e-67 UniRef50_Q3AYF6 Possible type II alternative RNA polymerase sigm... 258 1e-67 UniRef50_Q2T2N0 RNA polymerase sigma factor n=32 Tax=pseudomalle... 258 2e-67 UniRef50_A6F9J5 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 reg... 258 2e-67 UniRef50_B2KCU1 RNA polymerase sigma factor n=1 Tax=Elusimicrobi... 258 3e-67 UniRef50_Q3M2G3 Sigma-70 n=1 Tax=Anabaena variabilis ATCC 29413 ... 257 3e-67 UniRef50_C6XTP2 RNA polymerase sigma factor n=1 Tax=Pedobacter h... 257 5e-67 UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q... 255 1e-66 UniRef50_A8ZW44 RNA polymerase sigma factor n=1 Tax=Desulfococcu... 255 1e-66 UniRef50_B8DKK5 RNA polymerase sigma factor n=11 Tax=Proteobacte... 255 1e-66 UniRef50_A6FGX1 DNA-directed RNA polymerase, sigma subunit n=1 T... 254 3e-66 UniRef50_C0R0V4 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 253 6e-66 UniRef50_A5GV05 Alternative RNA polymerase sigma factor, sigma-7... 252 1e-65 UniRef50_C0ZIC6 RNA polymerase sigma factor n=1 Tax=Brevibacillu... 252 2e-65 UniRef50_C6JPD1 RNA polymerase sigma factor n=2 Tax=Fusobacteriu... 252 2e-65 UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece s... 252 2e-65 UniRef50_A1TWY8 RNA polymerase, sigma 32 subunit, RpoH n=2 Tax=M... 251 3e-65 UniRef50_A8Z659 RNA polymerase sigma factor rpoD n=5 Tax=Flavoba... 250 4e-65 UniRef50_Q1MQR0 RNA polymerase sigma factor n=5 Tax=Desulfovibri... 250 4e-65 UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax f... 250 5e-65 UniRef50_C7LZN3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 250 5e-65 UniRef50_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella... 250 7e-65 UniRef50_C8QXR7 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 249 1e-64 Sequences not found previously or not previously below threshold: >UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Proteobacteria RepID=RPOS_SHIFL Length = 330 Score = 430 bits (1106), Expect = e-119, Method: Composition-based stats. Identities = 328/330 (99%), Positives = 330/330 (100%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVE+EPSDNDLAEEELLSQGATQRVLDATQL Sbjct: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQL 60 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI Sbjct: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR Sbjct: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD 240 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD Sbjct: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD 240 Query: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE Sbjct: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 Query: 301 RVRQIQVEGLRRLREILQTQGLNIEALFRE 330 RVRQIQVEGLRRLREILQTQGLNIEALFR+ Sbjct: 301 RVRQIQVEGLRRLREILQTQGLNIEALFRK 330 >UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0D3_ABIDE Length = 409 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 131/317 (41%), Positives = 199/317 (62%), Gaps = 1/317 (0%) Query: 7 KVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEEL-LSQGATQRVLDATQLYLGEI 65 K++D E + D+ + P +D A+ E+ + D ++YL EI Sbjct: 87 KIYDYLESNGITIMNINDIDDDLFDDTLPEVDDEADLEIGDDITLSIMSDDPVKIYLKEI 146 Query: 66 GYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNL 125 G PLL+ +EEV A++ GD + R+ ESNLRLVV IA++Y RGL+ LDLI+EGNL Sbjct: 147 GNYPLLSMDEEVELAKKIAEGDQYATDRLTESNLRLVVSIAKKYVGRGLSFLDLIQEGNL 206 Query: 126 GLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAREL 185 GLI+AV+KFD +G++FSTYATWWIRQ I R+I +Q+RTIR+P+H+ + +N R +R L Sbjct: 207 GLIKAVDKFDYSKGYKFSTYATWWIRQAITRSIADQSRTIRIPVHMSEVINKAYRISRSL 266 Query: 186 SHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENG 245 +L EP+ EEIA++++ PV+ V +++++ S+DTP+G + + L D + D+ G Sbjct: 267 LQELGREPTEEEIAKEMNLPVEKVREIMKISADPISLDTPIGEEDDSHLGDFIKDDTIMG 326 Query: 246 PEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQI 305 PED ++ I K L L+ +++ VL RFGLL TLE+VG+E +TRER+RQI Sbjct: 327 PEDAAAYTMLQDQIQKLLTTLSEREQRVLILRFGLLDGRTRTLEEVGKEFNVTRERIRQI 386 Query: 306 QVEGLRRLREILQTQGL 322 + + LR+LR + + L Sbjct: 387 EAKALRKLRHPNRARML 403 >UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmicutes RepID=RPOD_STAAN Length = 368 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 125/308 (40%), Positives = 194/308 (62%), Gaps = 4/308 (1%) Query: 16 EFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEE 75 + ++N + + +EK ++ LS ++ D ++YL EIG LL+A+E Sbjct: 61 QLNDNDISLVNEKD----SSDTDEKLNPSDLSAPPGVKINDPVRMYLKEIGRVNLLSAQE 116 Query: 76 EVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 E+ A+R +GD ++ R+ E+NLRLVV IA+RY RG+ LDLI+EGN+GLI+AVEKFD Sbjct: 117 EIELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFD 176 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R R+L L +P+ Sbjct: 177 FNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAP 236 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 EEI E++D P + V +L++ + S++TP+G + + L D + D++ P D + + Sbjct: 237 EEIGEEMDLPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELL 296 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 K+ + L L ++ VL RFGL TLE+VG+ G+TRER+RQI+ + LR+LR Sbjct: 297 KEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 356 Query: 316 ILQTQGLN 323 +++ L Sbjct: 357 PSRSKRLK 364 >UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacteria RepID=RPOD_LISMO Length = 374 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 128/294 (43%), Positives = 189/294 (64%), Gaps = 3/294 (1%) Query: 30 LVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA 89 LV++E DL + +S ++ D ++YL EIG LLTA+EE+ A+R GD+ Sbjct: 80 LVKEETESFDLTD---MSVPPGVKINDPVRMYLKEIGRVDLLTADEEIALAKRIEAGDIE 136 Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ R+ E+NLRLVV IA+RY RG+ LDLI+EGN+GL++AVEKFD +GF+FSTYATWW Sbjct: 137 AKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWW 196 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI +Q RTIR+P+H+V+ +N +R R L L +PS EEI E++D P + V Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKV 256 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 +L++ + S++TP+G + + L D + D+ P D + +K+ + L L + Sbjct: 257 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDR 316 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 + VL RFGL TLE+VGR G+TRER+RQI+ + LR+LR +++ L Sbjct: 317 EENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLK 370 >UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacteria RepID=RPSD2_BACSP Length = 377 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 121/271 (44%), Positives = 185/271 (68%) Query: 53 RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNR 112 ++ D ++YL EIG PLL+A++EV A+R + GD ++RR+ E+NLRLVV IA+RY R Sbjct: 103 KINDPVRMYLKEIGRVPLLSADDEVELAKRIMNGDEEAKRRLAEANLRLVVSIAKRYVGR 162 Query: 113 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172 G+ LDLI+EGN+GLI+AVEKFD +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V Sbjct: 163 GMLFLDLIQEGNMGLIKAVEKFDHNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMV 222 Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232 + +N +R +R+L +L EP+ EEIA +++ V+ V ++++ + S++TP+G + + Sbjct: 223 ETINKLIRVSRQLLQELGREPTPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDS 282 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 L D + D++ P D + +K+ + L L ++ VL RFGL TLE+VG Sbjct: 283 HLGDFIEDQEALTPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVG 342 Query: 293 REIGLTRERVRQIQVEGLRRLREILQTQGLN 323 + G+TRER+RQI+ + LR+LR +++ L Sbjct: 343 KVFGVTRERIRQIEAKALRKLRHPSRSKRLK 373 >UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=B8FTY1_DESHD Length = 372 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 127/270 (47%), Positives = 186/270 (68%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG 113 + D ++YL EIG PLLTAEEE+ A+R +GD +++RR+ E+NLRLVV IA+RY RG Sbjct: 99 IDDPVRMYLKEIGRVPLLTAEEEIELAKRMEQGDESAKRRLAEANLRLVVSIAKRYVGRG 158 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 + LDLI+EGNLGLI+AVEKFD +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ Sbjct: 159 MLFLDLIQEGNLGLIKAVEKFDYVKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVE 218 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 +N +R +R+L +L EP+ EEIA Q+D V+ V ++++ + S++TP+G + + Sbjct: 219 TINKLIRVSRQLLQELGREPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSH 278 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 L D + DE P + +K+ + + L L ++ +VL RFGL TLE+VG+ Sbjct: 279 LGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQ 338 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQGLN 323 E G+TRER+RQI+ + LR+LR +++ L Sbjct: 339 EFGVTRERIRQIEAKALRKLRHPSRSKKLK 368 >UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia RepID=Q3AEW8_CARHZ Length = 370 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 131/331 (39%), Positives = 204/331 (61%), Gaps = 13/331 (3%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEP----------SDNDLAEEEL-LSQGATQ 52 N+ ++ +L E G+EV E +E + +D+ E +L L+ Sbjct: 38 NSEQIDELYE--YLANQGIEVVPEIPELELDSINSLDDDVDFKPSDIDEVDLDLTIPEGI 95 Query: 53 RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNR 112 + D ++YL EIG PLLT EEE+ A+R GD ++R++ E+NLRLVV IA+RY R Sbjct: 96 AIDDPVRMYLKEIGRVPLLTPEEEIELAKRKEEGDEEAKRKLAEANLRLVVSIAKRYVGR 155 Query: 113 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172 G+ LDLI+EGNLGL++AVEKFD +G++FSTYATWWIRQ I RAI +Q RTIR+P+H+V Sbjct: 156 GMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMV 215 Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232 + +N +R +R L +L EP+ EEIA+++ D V ++++ + S++TP+G + + Sbjct: 216 ETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMKIAQEPVSLETPIGEEEDS 275 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 L D + D P + +++ + + L L ++++VL RFGL A TLE+VG Sbjct: 276 HLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVG 335 Query: 293 REIGLTRERVRQIQVEGLRRLREILQTQGLN 323 + G+TRER+RQI+ + LR+LR +++ L Sbjct: 336 QIFGVTRERIRQIEAKALRKLRHPSRSKKLK 366 >UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria RepID=B0TG57_HELMI Length = 371 Score = 372 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 125/270 (46%), Positives = 187/270 (69%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG 113 + D ++YL EIG PLL+AEEE+ A+R GD A++RR+ E+NLRLVV IA+RY RG Sbjct: 98 IDDPVRMYLKEIGRVPLLSAEEEIELAKRMEEGDEAAKRRLAEANLRLVVSIAKRYVGRG 157 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 + LDLI+EGNLGLI+AVEKFD +G++FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ Sbjct: 158 MLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVE 217 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 +N +R +R+L + EP EEIA+++D PV+ V ++++ + S++TP+G + + Sbjct: 218 TINKLIRVSRQLLQEYGREPMPEEIAKEMDIPVERVREIMKIAQEPVSLETPIGEEEDSH 277 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 L D + D+ P + +K+ + + L L A++ +VL RFGL + TLE+VG+ Sbjct: 278 LGDFIEDQDAPAPAEAASFILLKEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQ 337 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQGLN 323 E G+TRER+RQI+ + LR+LR +++ L Sbjct: 338 EFGVTRERIRQIEAKALRKLRHPSRSKKLK 367 >UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacteria RepID=RPOD_STRR6 Length = 369 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 126/294 (42%), Positives = 192/294 (65%), Gaps = 1/294 (0%) Query: 29 ALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDV 88 A V + +L++E+L+ + +V D ++YL EIG PLLT EEE A GD+ Sbjct: 71 ARVLSNEEEPELSDEDLIG-STSAKVNDPVRMYLKEIGVVPLLTNEEEKELALAVEAGDI 129 Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 +++R+ E+NLRLVV IA+RY RG+ LDLI+EGN+GL++AV+KFD +GF+FSTYATW Sbjct: 130 EAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RAI +Q RTIR+P+H+V+ +N +R R L +L +P+ E+IAE++D D Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V +L++ + S++TP+G + + L D + DE P D T +++ + + L L Sbjct: 250 VREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILDTLTD 309 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++ VL RFGL + TLEDVG+ +TRER+RQI+ + LR+LR+ +++ L Sbjct: 310 REENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSKPL 363 >UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria RepID=A5IMD4_THEP1 Length = 407 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 123/282 (43%), Positives = 184/282 (65%), Gaps = 1/282 (0%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY 109 + V D+ ++YL EIG PLLT +E ARRA GD ++ ++I SNLRLVV IA+RY Sbjct: 123 DSSNVRDSIKMYLKEIGKIPLLTPAQERELARRAQMGDKKAKEKLITSNLRLVVSIAKRY 182 Query: 110 GNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 RGL+ DLI+EGN+GL++AVEKFD +G++FSTYATWWIRQ I RAI +Q RTIR+P+ Sbjct: 183 MGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPV 242 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD 229 H+V+ +N R RE K EPS EE+A+ + KP + + +L + S+++P+G D Sbjct: 243 HMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLESPIGED 302 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLE 289 + ++ D +AD+ P+ M++ + K L L+ ++ VL R+GLL + TLE Sbjct: 303 EDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLE 362 Query: 290 DVGREIGLTRERVRQIQVEGLRRLREILQTQGLN-IEALFRE 330 +VG+ +TRER+RQI+V+ LR+LR +++ L + +L E Sbjct: 363 EVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSLMDE 404 >UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermotogaceae RepID=RPOD_THEMA Length = 399 Score = 369 bits (947), Expect = e-101, Method: Composition-based stats. Identities = 130/323 (40%), Positives = 202/323 (62%), Gaps = 7/323 (2%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQG------ATQRVLDATQLYLGEIGYS 68 E +++G+ + + + E+ + +D E E L + + V D+ ++YL EIG Sbjct: 74 EELEKHGINIVENEPEEEEISASSDEQELEELLEKESPEIHDSSNVRDSIKMYLKEIGKI 133 Query: 69 PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLI 128 PLLT +E ARRA GD ++ ++I SNLRLVV IA+RY RGL+ DLI+EGN+GL+ Sbjct: 134 PLLTPAQERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLL 193 Query: 129 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHK 188 +AVEKFD +G++FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N R RE K Sbjct: 194 KAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQK 253 Query: 189 LDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPED 248 EPS EE+A+ + KP + + +L + S+++P+G D + ++ D +AD+ P+ Sbjct: 254 HGEEPSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKK 313 Query: 249 TTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVE 308 M++ + K L L+ ++ VL R+GLL + TLE+VG+ +TRER+RQI+V+ Sbjct: 314 EAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVK 373 Query: 309 GLRRLREILQTQGLN-IEALFRE 330 LR+LR +++ L + +L E Sbjct: 374 ALRKLRHPSRSKYLKSLLSLMDE 396 >UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNX0_9FIRM Length = 373 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 127/278 (45%), Positives = 186/278 (66%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 LS + D ++YL EIG PLLTAEEEV A+R GD +++R+ E+NLRLVV I Sbjct: 92 LSVPEGVSIDDPVRMYLKEIGRVPLLTAEEEVALAKRMEAGDEEAQKRLAEANLRLVVSI 151 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A+RY RG+ LDLI+EGNLGLI+AVEKFD +G++FSTYATWWIRQ I RAI +Q RTI Sbjct: 152 AKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWWIRQAITRAIADQARTI 211 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 R+P+H+V+ +N +R +R+L +L EP+ EEIA++++ VD V ++++ + S++TP Sbjct: 212 RIPVHMVETINKLIRVSRQLLQQLGREPTPEEIAKEMEIGVDRVREIMKIAQEPVSLETP 271 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 +G + + L D + D+ P D +K+ + L L ++ +VL RFGL A Sbjct: 272 IGEEEDSHLGDFIEDQDAPAPADAASFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRA 331 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 TLE+VG+ G+TRER+RQI+ + LR+LR +++ L Sbjct: 332 RTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLK 369 >UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacteria RepID=RPOD_LACLA Length = 386 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 122/326 (37%), Positives = 195/326 (59%), Gaps = 11/326 (3%) Query: 8 VHDLNEDA--EFDENGVEVFDEK------ALVEQEPSDNDLAEEELLSQGATQRVLDATQ 59 V D ED + + G+ + D+ ALV E ++++ + R+ D + Sbjct: 57 VDDALEDLFKQIQDAGISIVDKDGNPSPLALVTDEIEKEEVSDTAMDEIVTNVRIDDPVR 116 Query: 60 LYLGEIGYSPLLTAEEEVYFARRALRGDVAS---RRRMIESNLRLVVKIARRYGNRGLAL 116 +YL EIG PL++ +EE A + G + ++ + E+NLRLVV IA+RY RG+ Sbjct: 117 MYLKEIGRYPLISLDEETKLAEAIIAGGEGAEFAKQMLAEANLRLVVSIAKRYSGRGMQF 176 Query: 117 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELN 176 LDLI+EGN+GL++AV+KFD +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N Sbjct: 177 LDLIQEGNMGLMKAVDKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIN 236 Query: 177 VYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLD 236 +R R L +L +PS EEI ++L D V +L++ + S++TP+G + + L D Sbjct: 237 KLIRVQRNLLQELGRDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGD 296 Query: 237 ILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIG 296 + D+ P D T +++ + + + L ++ VL RFGL TLEDVG++ Sbjct: 297 FIEDDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFK 356 Query: 297 LTRERVRQIQVEGLRRLREILQTQGL 322 +TRER+RQI+ + +++LR +++ L Sbjct: 357 VTRERIRQIEAKAIKKLRHPRRSKPL 382 >UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria RepID=C7NC70_LEPBD Length = 392 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 128/318 (40%), Positives = 207/318 (65%), Gaps = 2/318 (0%) Query: 8 VHDLNEDAEFDENGVEVFDEKALVEQ--EPSDNDLAEEELLSQGATQRVLDATQLYLGEI 65 L + + + + E ++ + + + + L + +LL + V + ++YL EI Sbjct: 71 PETLADIEKMEISDFEDTHDEFVESEIDDSEVDKLLQTDLLKMAESMDVDEPIKMYLREI 130 Query: 66 GYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNL 125 G PLL+ EEE+ +A+R L G+ +++++IESNLRLVV IA+++ NRGL +LDLI+EGN+ Sbjct: 131 GQIPLLSYEEEIDYAQRVLDGEEEAKQKLIESNLRLVVSIAKKHTNRGLKMLDLIQEGNM 190 Query: 126 GLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAREL 185 GL++AVEKF+ E+GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N + +R + Sbjct: 191 GLMKAVEKFEYEKGFKFSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKIKKESRII 250 Query: 186 SHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENG 245 + EP+AEE+AE+L+ PV+ V +L +N+ S++TP+G + + L D + D+K Sbjct: 251 LQETGKEPTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDKFAN 310 Query: 246 PEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQI 305 P D T +K+ + + L LN ++ VL R+GL TLE+VG+ +TRER+RQI Sbjct: 311 PYDATTRILLKEQLDEVLKTLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQI 370 Query: 306 QVEGLRRLREILQTQGLN 323 +V+ LR+LR + + L Sbjct: 371 EVKALRKLRHPSRRKKLE 388 >UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KI17_9GAMM Length = 367 Score = 353 bits (907), Expect = 4e-96, Method: Composition-based stats. Identities = 184/298 (61%), Positives = 232/298 (77%) Query: 33 QEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRR 92 EP + A Q LD TQLYL EIG+ PLL+A+EE ++AR +GD A+R+ Sbjct: 70 DEPVTAQSPFNDTDDHDARQITLDPTQLYLNEIGFVPLLSADEEKHYARLVQKGDEAARK 129 Query: 93 RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQ 152 RMIESNLRLVV IARRY +RG++LLDLIEEGNLGL+RAVEKFDPERGFRFSTYATWWIRQ Sbjct: 130 RMIESNLRLVVNIARRYLHRGMSLLDLIEEGNLGLMRAVEKFDPERGFRFSTYATWWIRQ 189 Query: 153 TIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM 212 TIER IMNQ RTIRLPIH+VK+LN LR AREL+ +LDH+P+ +EIA + K +VSR+ Sbjct: 190 TIERGIMNQARTIRLPIHVVKDLNGCLRAARELTQQLDHDPTTQEIASRTHKTATEVSRL 249 Query: 213 LRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQRE 272 + LNER++S+D PLG +S+ ++ + +ADE P + QDDD+ S+ WL EL+ KQRE Sbjct: 250 MGLNERVSSMDAPLGPNSDSSVAETIADEHGCDPSEQIQDDDVHDSVAHWLDELSEKQRE 309 Query: 273 VLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 V+ RRFGLLGY++ TLE+VG+EIGLTRERVRQIQVE L+RLR IL+ QGL+ +AL ++ Sbjct: 310 VVVRRFGLLGYDSCTLEEVGQEIGLTRERVRQIQVEALKRLRRILERQGLSADALLKQ 367 >UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATP3_RUBXD Length = 366 Score = 352 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 135/312 (43%), Positives = 199/312 (63%), Gaps = 4/312 (1%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGA----TQRVLDATQLYLGEIGYSPL 70 A +E + + DE+ E + A E + + D+ ++YL EIG PL Sbjct: 50 ATLEEEDITLVDEELEGAAEVTPERAAGREGDNPASQLAHAVATGDSIRMYLAEIGRVPL 109 Query: 71 LTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRA 130 LT +E+ A+ RG S+ +++E+NLRLVV IA++Y NRG++ LDLI+EGN+GLIRA Sbjct: 110 LTHADEIRLAKAISRGCKRSKDKLVEANLRLVVSIAKKYRNRGVSFLDLIQEGNIGLIRA 169 Query: 131 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLD 190 EKFD +GF+FSTYATWWIRQ I RAI ++ RTIR+P+H+V+++N Y RT R ++ L Sbjct: 170 AEKFDYRKGFKFSTYATWWIRQAITRAIADKGRTIRIPVHMVEKVNKYHRTQRRMTQALG 229 Query: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT 250 EP+ EE+AE+L PV++V R+ +++R S++TP+G D +L D L D P D Sbjct: 230 REPTDEEVAEELGVPVEEVLRLQEISQRSISLETPVGDDESSSLGDFLEDASAVTPTDAV 289 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310 + +K + + L EL ++R+++ RFG+ TLE+VGRE +TRERVRQIQ++ L Sbjct: 290 SESLLKLHLREALDELPERERQIIEMRFGMKDDRPRTLEEVGREFDITRERVRQIQMKTL 349 Query: 311 RRLREILQTQGL 322 LRE +TQ L Sbjct: 350 NLLREQRRTQNL 361 >UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi (class) RepID=A7NGG2_ROSCS Length = 405 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 120/295 (40%), Positives = 180/295 (61%), Gaps = 26/295 (8%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA------------------------ 89 V D ++YL EIG LLTA+EE+ A++ RG+ A Sbjct: 106 VDDPVRVYLREIGRVNLLTAQEEIMLAQQVERGEQANERLQNGDYTPVERLQLHRWVQEG 165 Query: 90 --SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 +R R+I++NLRLVV IA++Y RG++LLDLI+EGN+GL+RA EKFD +G++FSTYAT Sbjct: 166 QAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKFDYRKGYKFSTYAT 225 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I R I +Q+RTIRLP+H+ + +N +RT+ + +P+ +EIA +L PV+ Sbjct: 226 WWIRQAITRVIADQSRTIRLPVHVGETINRVMRTSNRIQQTTGRDPTPDEIALELGIPVE 285 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V R+L + S++TP+G + + L D + D K P ++ +++ I L +L Sbjct: 286 KVRRVLEAARQTISLETPIGPEGDSVLADFIEDGKGATPMESASSHILREQIDSALEKLP 345 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++R ++ R+GL TLE+VGRE G+TRER+RQI+ LR+LR +GL Sbjct: 346 ERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRHPHYGRGL 400 >UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Streptomyces RepID=UPI0001AF1456 Length = 430 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 120/288 (41%), Positives = 174/288 (60%), Gaps = 27/288 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRG---------------------------DV 88 D + YL EIG PLLTA EEV ARR G Sbjct: 132 DLFRQYLREIGRIPLLTAAEEVELARRVEAGLFAEEKLRLTPDLDSRLAHDLDRLVVMGR 191 Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 ++RR+IE+NLRLVV +A+RY RGL +LDL++EGNLGLIRAVEKFD RG++FSTYATW Sbjct: 192 MAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATW 251 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ + RA+ +Q RTIR+P+H+V+ +N +R R + + EP+ EE+A LD P + Sbjct: 252 WIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGREPTPEEVAAHLDLPPER 311 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V +LRL + S+ P+G + + AL D++ D P ++ +++ + L L Sbjct: 312 VGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGE 371 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 ++R+V+ R+GL+ TLE++GR G+TRER+RQI+ + L +LR+ Sbjct: 372 RERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDH 419 >UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actinobacteria (class) RepID=RPOD_MYCBO Length = 528 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 117/337 (34%), Positives = 180/337 (53%), Gaps = 37/337 (10%) Query: 23 EVFDEKALVEQEPSDNDLAEEELLSQGATQR------VLDATQLYLGEIGYSPLLTAEEE 76 E E ++ D E+E + ++ D+ + YL +IG LL AEEE Sbjct: 187 EEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEE 246 Query: 77 VYFARRALRGDVA-------------------------------SRRRMIESNLRLVVKI 105 V A+R G A ++ ++E+NLRLVV + Sbjct: 247 VELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSL 306 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A+RY RG+A LDLI+EGNLGLIRAVEKFD +G++FSTYATWWIRQ I RA+ +Q RTI Sbjct: 307 AKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTI 366 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 R+P+H+V+ +N R REL L EP+ EE+A+++D + V + + S+D Sbjct: 367 RIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQT 426 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 +G + + L D + D + D ++ + L L+ ++ V+ RFGL + Sbjct: 427 IGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQP 486 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 TL+++G+ G+TRER+RQI+ + + +LR ++Q L Sbjct: 487 RTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVL 523 >UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZY7_9FIRM Length = 447 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 124/366 (33%), Positives = 198/366 (54%), Gaps = 53/366 (14%) Query: 8 VHDLNEDAEFDENGVEVFDEKALVEQEP---SDNDLAEEELLSQG--------------A 50 ++ L ++ FDEN VE E L+++ + + AEE + G Sbjct: 79 IYTLCDEIPFDENDVECMYE--LLKENGIGIKEFEAAEENIAKNGERADKVVDIRRIVRT 136 Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA--------------------- 89 + + D ++YL EIG PLLT EEE A + Sbjct: 137 SIGIDDPVKMYLKEIGQVPLLTREEEKILATQVKHALAKQNEIRERLERLKEGSATYKKE 196 Query: 90 -------------SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 + ++ E+NLRLVV IA+ + +RG+ LDLI+EGNLGL++AV+KFD Sbjct: 197 MKLLDEYKQDYNKAMHQLCEANLRLVVSIAKNHKDRGMHFLDLIQEGNLGLMKAVDKFDV 256 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 +R F+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ ++ R +R L +L EP E Sbjct: 257 DRNFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIHKLTRISRTLLQELGREPKPE 316 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 EIA+++D + V +LR+++ S++ P+G + + L D + D + P D ++ Sbjct: 317 EIAKEMDITTEKVRDILRISQEPVSLEKPIGEEEDSHLGDFIPDTEVPSPLDVAFSSMLR 376 Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 +++ L L ++R VL RFGL+ + TLE+VG++ +TRER+RQI+ + +R+L+ Sbjct: 377 DELLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKLKHP 436 Query: 317 LQTQGL 322 ++ L Sbjct: 437 NMSKKL 442 >UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacteria (class) RepID=B9CNX8_9ACTN Length = 455 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 119/299 (39%), Positives = 174/299 (58%), Gaps = 31/299 (10%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRG----------------------------- 86 D ++YL EIG LLTA EEV A + G Sbjct: 152 DPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEATQKLEDFEDEKIELSRAEQRRLMRIE 211 Query: 87 --DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFST 144 + +++++I +NLRLVV IA+RY RG+ LDLI+EGNLGLIRAVEKFD +GF+FST Sbjct: 212 QVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFST 271 Query: 145 YATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDK 204 YATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R R+L L +P+ EEI ++ Sbjct: 272 YATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPTPEEIGAEMGM 331 Query: 205 PVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLF 264 D V + ++++ S++TP+G + + L D + D P D D +++ + + L Sbjct: 332 SPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAIAPPDAASDSMLREQLEQVLD 391 Query: 265 ELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 L ++R+V+ RFGL TLE+VGRE G+TRER+RQI+ + L +LR ++ L Sbjct: 392 GLADRERKVIKFRFGLEDGRPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSRLK 450 >UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A8S2D4_9CLOT Length = 406 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 129/328 (39%), Positives = 198/328 (60%), Gaps = 16/328 (4%) Query: 11 LNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQR----------------V 54 L++DAE D+ + + + ++ D L ++S G + Sbjct: 74 LDDDAELDQPSLAKEEFRWGRDRLDPDEMLDGGSMVSGGDEEEEEYDGYGQERLLEGVST 133 Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 D + YL EIG LLT EEE ARR GDV + R+++E+NLRLVV IA+RY RG+ Sbjct: 134 ADPIREYLKEIGSIALLTPEEESDLARRKSEGDVEAGRKLVEANLRLVVSIAKRYTGRGM 193 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 + LDL++EGNLGL++AVEKFD +G+R STYATWW++Q+I R++ +Q+RTIRLP+H+V+ Sbjct: 194 SFLDLVQEGNLGLMKAVEKFDYAKGYRLSTYATWWVKQSITRSLADQSRTIRLPVHMVEA 253 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKAL 234 +N R R LS KL EPS EE+AE+++ V+ +++ + S++TP+G + L Sbjct: 254 VNKIRRAQRSLSVKLGREPSMEEVAEEVNMSGKRVAELIQASGDTVSLETPVGDEEGSNL 313 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 D +AD+ ED + +++ I L LN ++REV+ RFGL TLE+VG+ Sbjct: 314 GDFVADDANASTEDKAESFLLREEIDSMLQGLNPREREVIILRFGLETGHPLTLEEVGKR 373 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGL 322 +TRER+RQI+ LR+LR +++ + Sbjct: 374 FNVTRERIRQIETAALRKLRNPSKSKKI 401 >UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1K5_THERP Length = 340 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 138/304 (45%), Positives = 194/304 (63%), Gaps = 1/304 (0%) Query: 17 FDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEE 76 F E E +VE E +D E+L + D +LYL +I +PLLT EEE Sbjct: 30 FAEERAIEPVEAEIVEPEALLSDAELEDLFRSDPS-LASDPLRLYLRDIAEAPLLTPEEE 88 Query: 77 VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 V A+R GD + +R + SNLRLVV IA+RY RGL+LLDLI+EGN+GL+RAVEKFD Sbjct: 89 VELAKRIKEGDTEALQRFVRSNLRLVVSIAKRYVGRGLSLLDLIQEGNIGLMRAVEKFDW 148 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 RG+RFSTYATWWIRQ I RAI +Q RTIRLP+H+ + Y RT +L+ +L +P+ E Sbjct: 149 RRGYRFSTYATWWIRQAITRAIADQGRTIRLPVHMTDSITRYHRTTTQLAQELGRQPTPE 208 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 EIAE + + +++++R +R S+D PL + E +L D++ADE PE+ ++ M+ Sbjct: 209 EIAEAMSVQPEKIAQIVRAAQRAVSLDQPLSEEDETSLGDLIADELAQSPEELAEESLMR 268 Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 + I + L L ++R VL R+GL E TL +VG +G++RERVRQI+ E LR+LR I Sbjct: 269 RDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEALRKLRRI 328 Query: 317 LQTQ 320 + + Sbjct: 329 ARER 332 >UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexaceae RepID=A5UPS4_ROSS1 Length = 402 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 118/350 (33%), Positives = 191/350 (54%), Gaps = 28/350 (8%) Query: 1 MSQNTLKVHDLNE-DAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQ 59 + Q + D+++ A G+ V + + S D + + D + Sbjct: 48 LPQPEHHIADVDQLYASLQAEGIRVVETPLDIHDNGSTGDDELLADMPDLTDVALDDPVR 107 Query: 60 LYLGEIGYSPLLTAEEEVYFARRALRGDVA---------------------------SRR 92 +YL EIG PLL+AE+EV A+ G A +R+ Sbjct: 108 MYLQEIGQVPLLSAEQEVMLAKAMEAGHRARRALEREEYSSWQERVMYEQQVAQGNEARQ 167 Query: 93 RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQ 152 +I++NLRLVV IA++Y + GL ++DL++EGN+GL+RAVEKFD +G +FSTYATWWIRQ Sbjct: 168 HLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFSTYATWWIRQ 227 Query: 153 TIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM 212 I RAI +Q+RTIRLP+H+ + ++ RT+ +L + EP+ EEIA+ + V R Sbjct: 228 AITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIADAMGISSTKVRRT 287 Query: 213 LRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQRE 272 L + S++ P+G + E + D + D++ + P + +++ + + L +L ++R+ Sbjct: 288 LEASMHPLSLEMPVGQEGEGRMGDFIEDDRISTPAEAAAASMLREQLEEVLQKLPERERK 347 Query: 273 VLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++ R+GL TLE+VG E G+TRER+RQI+ LR+LR + L Sbjct: 348 IIQLRYGLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLRHPHLGKKL 397 >UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=Q47RL2_THEFY Length = 388 Score = 339 bits (871), Expect = 6e-92, Method: Composition-based stats. Identities = 132/329 (40%), Positives = 187/329 (56%), Gaps = 37/329 (11%) Query: 27 EKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG 86 E E E D D E ++ ++ D YL EIG PLLTAEEEV A+ G Sbjct: 59 EAVGGEPEYVDRDDFAEHPETRTSSG---DIVHAYLREIGRVPLLTAEEEVELAKAIEIG 115 Query: 87 DVA---------------------------------SRRRMIESNLRLVVKIARRYGNRG 113 A ++RR+IESNLRLVV +A+RY RG Sbjct: 116 LYAEQKLRAARTGPVPAQYSPEWFEDLNELVREGKLAKRRLIESNLRLVVSVAKRYLGRG 175 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 LALLDLI+EGNLGLIRAVEKFD RG++FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ Sbjct: 176 LALLDLIQEGNLGLIRAVEKFDYTRGYKFSTYATWWIRQAITRAIADQARTIRVPVHMVE 235 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 +N RT R L +L EP+ E++ +L+ D V + R+++ S+ TP+G + + A Sbjct: 236 SINRLARTRRRLHQELGREPTLHELSRELNVDHDRVVEIHRVSQEPISLHTPIG-EEDSA 294 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 D + D P + ++ + + L L+ +++ V+ RFGL + TLE+VGR Sbjct: 295 FGDFIEDTDAVPPVEAAAFVMLQDQLAQVLGGLSEREQRVITLRFGLEDGKPHTLEEVGR 354 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQGL 322 + G+TRER+RQI+ + L +LR+ + + L Sbjct: 355 KFGVTRERIRQIESKTLAKLRQPSRARIL 383 >UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=D1CF84_THET1 Length = 363 Score = 339 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 131/297 (44%), Positives = 191/297 (64%), Gaps = 3/297 (1%) Query: 20 NGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYF 79 G+EV E+ + + DL ++ L + DA ++YL EIG PLLT +EEV Sbjct: 55 EGIEVLPEETTEAEAGPEEDL-DQTLEELENDGYLTDAVKIYLREIGSVPLLTPKEEVEL 113 Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 A+R +GD + +R + +NLRLVV IA+RY RGL LLDLI+EGN+GL+RAV+KFD +G Sbjct: 114 AKRIEKGDTEALQRFVLANLRLVVSIAKRYVGRGLPLLDLIQEGNIGLMRAVQKFDWRKG 173 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 RFSTYATWWIRQ I RAI +++R IRLP HI +ELN R ++LS ++ EP+ EEIA Sbjct: 174 HRFSTYATWWIRQAITRAIGDKSREIRLPAHINEELNRINRIRQQLSQTVNREPTPEEIA 233 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 E+ + V +L ++ S+DTP+G +++ L + + D + N PE+ D+ +K + Sbjct: 234 EKAGTSPERVRELLGYLQQPVSLDTPVGEEADSTLGEFVPDVRAN-PEEEATDEVLKTEM 292 Query: 260 VKWLFE-LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 + L E L +++ VL R+GL +LE VGRE+G+TRERVRQ++ + L +LR Sbjct: 293 DRVLDEVLTPREKRVLQLRYGLGDGHTYSLEKVGRELGVTRERVRQLEKQALEKLRR 349 >UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria RepID=C4LJ07_CORK4 Length = 621 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 112/319 (35%), Positives = 168/319 (52%), Gaps = 31/319 (9%) Query: 35 PSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG-------- 86 D A + D+ + YL +IG LL AE+EV A+R G Sbjct: 298 DEDESAALRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAQRIEAGLYANHKLE 357 Query: 87 -----------------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEG 123 ++ ++E+NLRLVV +A+RY RG+A LDLI+EG Sbjct: 358 ELKASNTKLSPAQSRDLRSIAHDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEG 417 Query: 124 NLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAR 183 NLGLIRAVEKFD +G++FSTYATWWIRQ I R++ +Q RTIR+P+H+V+ +N R R Sbjct: 418 NLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRSMADQARTIRIPVHMVEVINKLGRIQR 477 Query: 184 ELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKE 243 EL L EP+ EE+A ++D D V + + S+D +G + + L D + D + Sbjct: 478 ELLQDLSREPTPEELAREMDITEDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEA 537 Query: 244 NGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVR 303 D ++ + L L ++ V+ RFGL TL+++G+ G+TRER+R Sbjct: 538 VVAVDAVSFTLLQDQLQDVLKTLTEREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIR 597 Query: 304 QIQVEGLRRLREILQTQGL 322 QI+ + + +LR ++Q L Sbjct: 598 QIESKTMSKLRHPSRSQVL 616 >UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 Tax=Actinomycetales RepID=HRDA_STRCO Length = 396 Score = 335 bits (861), Expect = 9e-91, Method: Composition-based stats. Identities = 120/294 (40%), Positives = 174/294 (59%), Gaps = 27/294 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA-------------------------- 89 D + YL EIG PLL+A EEV ARR G A Sbjct: 98 DLFRQYLREIGRIPLLSAAEEVDLARRVEAGLFAEEKLRCSPGLDDRLALDLDRLVVLGR 157 Query: 90 -SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 ++RR+IE+NLRLVV +A+RY RGL +LDL++EGNLGLIRAVEKFD RG++FSTYATW Sbjct: 158 LAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATW 217 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ + RA+ +Q RTIR+P+H+V+ +N +R R + + EP+ +E+A LD + Sbjct: 218 WIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVAAHLDLAPER 277 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V +LRL + S+ P+G + + AL D++ D P ++ ++Q + L L Sbjct: 278 VGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGE 337 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++R+V+ R+GL TLE++GR G+TRER+RQI+ + L +LR+ L Sbjct: 338 RERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAYADQL 391 >UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQZ1_9GAMM Length = 359 Score = 334 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 168/307 (54%), Positives = 219/307 (71%) Query: 22 VEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFAR 81 V+ ++ + D+ + A LDA Q+YL +I Y PLLT EEE +AR Sbjct: 50 VDDVPAPEDEKELSPEQDVPVRPRTLRDARPAELDAIQIYLRDIEYRPLLTPEEERKYAR 109 Query: 82 RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 A GD + RRRMIE NLRLVVKIARRY NRGL LLDLIEEGNLGL+ AVEKFDPERGFR Sbjct: 110 LARDGDESGRRRMIECNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMHAVEKFDPERGFR 169 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 FSTYATWWIRQTIERA+MNQ RTIR+P+H+ KEL ++ R AR L+ +L +P+ EE+A++ Sbjct: 170 FSTYATWWIRQTIERALMNQGRTIRIPVHVSKELRMHARIARNLTQELGRDPTEEELAQR 229 Query: 202 LDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 L KPV D+ ++ ++E TS+D P G D E++L DILAD P +D D++ + + Sbjct: 230 LGKPVADIQKLRAMSEPSTSMDLPPGPDGERSLTDILADVNAQEPSSLLEDQDIQHLVDE 289 Query: 262 WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 WL EL+ KQREVL RRFGL G+E +TLE VG EIG+TRERVRQIQ++ L+RLR +L+++G Sbjct: 290 WLGELDYKQREVLVRRFGLHGFERSTLEQVGAEIGVTRERVRQIQMDALKRLRRLLESRG 349 Query: 322 LNIEALF 328 + + + Sbjct: 350 MKGDEVL 356 >UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317B8 Length = 367 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 126/322 (39%), Positives = 198/322 (61%), Gaps = 9/322 (2%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 + + +++ + + A N VE ++ + + DL + D+ QL Sbjct: 51 LERAEIELVEEIDPATTASNQVERAPDRRRGRRARTALDLKPDM---------TTDSLQL 101 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 +L +IG LLTA+EEV A+R RGD+ ++++M+ESNLRLVV IA+ Y N+GL LDLI Sbjct: 102 FLKDIGKVRLLTAQEEVDLAKRIERGDLDAKQKMVESNLRLVVSIAKNYRNQGLPFLDLI 161 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 +EG LGL+RA EKFD +GF+FSTYATWWIRQ I RA+ ++ RTIR+P+H+V++LN R Sbjct: 162 QEGTLGLVRAAEKFDYRKGFKFSTYATWWIRQAIARALADKARTIRIPVHVVEKLNKIGR 221 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD 240 R+L +L EP+AEEIA+ ++V + R + S++ P+G + E +AD Sbjct: 222 AERKLVTELGREPTAEEIADVTGIDPEEVDSIKRSAQAPVSLEKPVGDEEESEFGQFIAD 281 Query: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 E+ P + + K+++ + L L+ ++R VL R+GL G TL++VGR +TRE Sbjct: 282 ERAESPYERAAEILTKEALREALENLSYRERRVLELRYGLGGEHPRTLDEVGRTFNVTRE 341 Query: 301 RVRQIQVEGLRRLREILQTQGL 322 R+RQI+ + L++L+ + + Q L Sbjct: 342 RIRQIENQSLKKLQSLAEAQKL 363 >UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi RepID=D1C1P9_SPHTD Length = 538 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 124/310 (40%), Positives = 191/310 (61%), Gaps = 7/310 (2%) Query: 19 ENGVEVFDEKALVEQEPSDNDLAEEEL---LSQGATQRVLDATQLYLGEIGYSPLLTAEE 75 E ++ E+ V +E + L + L Q ++ + + LL +E Sbjct: 225 EPAIQAVGEEFGVSREELEESLRRRRIEYDLLPSPIQELIRPVDAFPTDEEVWELLRRDE 284 Query: 76 EVYFARR---ALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVE 132 AR +RGD+ +R+++ E+NLRLVV +A++YG RG+++LDL++EGNLGLIRAVE Sbjct: 285 AALQARWEEFVVRGDI-ARKKLTEANLRLVVSVAKKYGGRGMSMLDLVQEGNLGLIRAVE 343 Query: 133 KFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHE 192 KF +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+++N +RT+R L +L E Sbjct: 344 KFQHHKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVEQINRLIRTSRRLQQELGRE 403 Query: 193 PSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQD 252 P++EEIA ++ P D V +L++++ S++ P+G + + L D + D K P D Sbjct: 404 PTSEEIAAEMGLPPDKVREILKISQEPVSLEMPIGEEEDSNLGDFIEDSKALAPSDAASL 463 Query: 253 DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRR 312 +K+ + L L ++R VL RFGL TLE+VGRE G+TRER+RQI+ + LR+ Sbjct: 464 KLLKEQVDDVLGSLGDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKALRK 523 Query: 313 LREILQTQGL 322 LR +++ L Sbjct: 524 LRHPSRSKKL 533 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 21 GVEVFDEKALVEQEPSDNDLAEEELLSQGATQ-RVLDATQLYLGEIGYSPLLTAEEEVYF 79 E + V +DNDL EL + + D ++YL EIG LLT E+EV Sbjct: 90 PAEDAPDLPDVAAVEADNDLFSTELSDVDLSGVSLDDPVRIYLREIGRVQLLTGEQEVAL 149 Query: 80 ARRALRGDVASRRR 93 A+ RGD R + Sbjct: 150 AQAMERGDYIFRLQ 163 >UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/Verrucomicrobia group RepID=B3DXQ3_METI4 Length = 287 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 119/265 (44%), Positives = 183/265 (69%), Gaps = 1/265 (0%) Query: 57 ATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLAL 116 A +LYL EI PLLT E+EV A+R +GD +RR+MI++NLRLVVKIA Y N GL L Sbjct: 7 ALKLYLREISQIPLLTKEKEVELAKRIQQGDQEARRQMIQANLRLVVKIAHDYANSGLPL 66 Query: 117 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELN 176 DLI EGN+GL++AV++FDP +G + STYA WWI+Q+I+RA+ NQ++TIRLP+H+V ++ Sbjct: 67 PDLISEGNIGLMKAVDRFDPSKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKIA 126 Query: 177 VYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA-LL 235 R A +LS L +P+ EE+AE+L V+ + + R S+D +G + + L Sbjct: 127 KMRRVAMQLSEILGRDPTDEELAEELGMSTTKVAELRTIAIRPASLDATVGEEEDGTALG 186 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 +++ DE P+ + D ++K +I++ L +L+ ++R++L+ RFGL G E TLE++G+E Sbjct: 187 ELVKDESAASPDQSVLDQNLKNTIMELLPKLDERERKILSLRFGLEGNEQMTLEEIGKEF 246 Query: 296 GLTRERVRQIQVEGLRRLREILQTQ 320 +TRER+RQ+Q LR++R+ L+ Q Sbjct: 247 HVTRERIRQLQNIALRKIRKELEKQ 271 >UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria RepID=B8GCU9_CHLAD Length = 398 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 123/325 (37%), Positives = 183/325 (56%), Gaps = 36/325 (11%) Query: 28 KALVEQEPSDNDLAEEELLSQGATQRVL----------DATQLYLGEIGYSPLLTAEEEV 77 +A V D ++ +E L+ T L D+ +LYL EIG PLLTAE+E Sbjct: 61 EAGVPVHDGDEPVSGDESLTPSVTDLDLDDELSDALLSDSVRLYLREIGQVPLLTAEQEK 120 Query: 78 YFARRALRGDVA--------------------------SRRRMIESNLRLVVKIARRYGN 111 A+ RG A +R++M +NLRLVV IA+RY + Sbjct: 121 QLAQMIERGQAAERKLATLPPDSPEAAKLRRIKEQGDEARQKMAAANLRLVVSIAKRYRD 180 Query: 112 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 171 RGL LLDLI+EG+LGL+RA+EKFD +G++FSTYATWWI+Q + RA+ +Q+R +RLP+H+ Sbjct: 181 RGLPLLDLIQEGSLGLLRAIEKFDHTKGYKFSTYATWWIKQALSRALADQSRLVRLPVHL 240 Query: 172 VKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSE 231 + LN R+L+ L EP+ E+A L + + + R + S+ TP+G +++ Sbjct: 241 GETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKLRELRRTAQDPVSLATPVGEEAD 300 Query: 232 KALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDV 291 L D + D +D ++Q I L +L+ ++R VL R+GL + TLE+V Sbjct: 301 STLADFIPDPHALDADDAAASGMLRQQIAAALDQLSERERRVLELRYGLADGQPRTLEEV 360 Query: 292 GREIGLTRERVRQIQVEGLRRLREI 316 G+ G+TRERVRQI+V+ LR+LR Sbjct: 361 GKAFGVTRERVRQIEVKALRKLRHP 385 >UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellular organisms RepID=RPOD_ANASP Length = 390 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 203/369 (55%), Gaps = 47/369 (12%) Query: 1 MSQNTLKVHDL--NEDAEF---DENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVL 55 M+Q +++ DL ED + D+ ++ F E E + A+ +Q + Sbjct: 19 MNQPEIELDDLLIEEDEDLLLADDGDIDEFLEPQTDEDDAKSGKAAKSRRRTQSKKKHYT 78 Query: 56 -DATQLYLGEIGYSPLLTAEEEVYFARRA------------------------------- 83 D+ +LYL EIG LL A+EE+ AR+ Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQ 138 Query: 84 ---------LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 L ++ +M++SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EKF Sbjct: 139 LPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 198 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D E+G++FSTYATWWIRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS ++ +P+ Sbjct: 199 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 258 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 EEIA +++ ++ + + + + S++TP+G + + L D + + E PED + Sbjct: 259 EEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGE-TPEDQVSKNL 317 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +++ + K L L+ ++R+VL R+GL TLE++G+ +TRER+RQI+ + LR+LR Sbjct: 318 LREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377 Query: 315 EILQTQGLN 323 + L Sbjct: 378 HPNRNSVLK 386 >UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiella burnetii RepID=RPOS_COXBU Length = 352 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 159/282 (56%), Positives = 212/282 (75%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 + R D TQ+YL E+G+ PLL A+EE+ ARR +GD +R++MIE+NLRLVVKI Sbjct: 69 TKKRRETRSSDPTQIYLRELGFQPLLNAKEELKIARRVHKGDPKARKQMIEANLRLVVKI 128 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 AR Y NRGL LDLIEEGNLGL+ AVEKFDPERGFRFSTYATWWIRQTIERAIMNQ+RT+ Sbjct: 129 ARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQTIERAIMNQSRTV 188 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 RLPIH++KELNVYLRTA++L+ ++DHE + E++A +DKPV ++ R++ L TS+D P Sbjct: 189 RLPIHVIKELNVYLRTAKKLTQEVDHEATPEDVAHLIDKPVQEIRRIMDLAPSATSIDVP 248 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 + D +K+L+D LAD+ P Q+ D++ I +WL +L+ + REV+ RFGL E Sbjct: 249 ISEDGQKSLVDTLADDNNIDPARLIQNVDLQDHIERWLAQLDERHREVVILRFGLHENEK 308 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEAL 327 TLE VG+ +GLTRERVRQIQ++ L++LR IL+ +G+ E + Sbjct: 309 GTLEAVGKAVGLTRERVRQIQIDALQQLRHILEMEGVTGEEV 350 >UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHQ6_9BACT Length = 322 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 124/318 (38%), Positives = 198/318 (62%), Gaps = 12/318 (3%) Query: 23 EVFDEKALVEQEPSDNDLAEEELLSQGA-----------TQRVLDATQLYLGEIGYSPLL 71 E+ D++ L+E+EP+D EE + L+ ++YL EI P+L Sbjct: 5 EIVDKEELLEEEPTDLSEVEEIETKLDTCETEPEPKYEYSSEDLEVFKIYLNEISKYPVL 64 Query: 72 TAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAV 131 T E+E ++ +G S+ MI+ NLRLVV IA++Y NRG+ L+DL+EEGN+GL++AV Sbjct: 65 TREQEGELSQGIEKGCNDSKETMIKCNLRLVVSIAKKYINRGMNLVDLVEEGNIGLLKAV 124 Query: 132 EKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDH 191 EKFD +GF+FSTYATWWIRQ IERAI+NQ R +R+P+H+ + ++ ++T EL KL Sbjct: 125 EKFDYTKGFKFSTYATWWIRQAIERAIINQCRMVRIPVHMSENISKVMKTQNELQQKLGR 184 Query: 192 EPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEK-ENGPEDTT 250 EP+ E++ P+ + ++ ++ TS+D P+GGD L + +AD++ P Sbjct: 185 EPTIHELSTACKMPLSTLKKVFDAIKQDTSLDMPVGGDESSTLHEFIADDEKYLDPYLKI 244 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310 ++ K+ I KWL L+ ++ ++ RR+GL G + TLE +G ++G+TRERVRQI+ L Sbjct: 245 ENTSKKEIIFKWLTFLSDNEKTIIIRRYGLTGNDPETLESIGNDLGITRERVRQIEKRVL 304 Query: 311 RRLREILQTQGLNIEALF 328 ++R +L T+ +++E L Sbjct: 305 SKMRNLLATKKISLEELL 322 >UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM97_9FIRM Length = 394 Score = 329 bits (845), Expect = 6e-89, Method: Composition-based stats. Identities = 102/265 (38%), Positives = 163/265 (61%), Gaps = 12/265 (4%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDV------------ASRRRMIESNLRL 101 + D +LYL E G +PLLT+E+E+ A+ G + +++ M +NLRL Sbjct: 113 ITDPVRLYLRECGTTPLLTSEQEMKLAQTIEIGKMPEATDEQKRMAAEAKKEMANANLRL 172 Query: 102 VVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQ 161 VV IA++Y RG+ LDLI+EGN+GL++AV+KFD +G++FSTYATWWIRQ I R+I +Q Sbjct: 173 VVSIAKKYPGRGMPFLDLIQEGNMGLLKAVDKFDYTKGYKFSTYATWWIRQAITRSIADQ 232 Query: 162 TRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITS 221 RTIR+P+H+V+ +N R R + E + EE+A++++ V+ + + + S Sbjct: 233 ARTIRVPVHMVETINKMNRVGRHFLQEHGREATNEELAKEMETSVEKIREAKKAAQDPIS 292 Query: 222 VDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL 281 ++TP+G + L D + D+K PED ++ I + L L +++ V+A R+G+ Sbjct: 293 LETPIGEKEDSHLGDFIEDQKTASPEDEAAATMRREQIHQLLETLTEREKGVIALRYGID 352 Query: 282 GYEAATLEDVGREIGLTRERVRQIQ 306 TLE+VG+ G+TRER+RQI+ Sbjct: 353 DGTQRTLEEVGKYFGVTRERIRQIE 377 >UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmataceae RepID=D1ASA0_ANACI Length = 649 Score = 329 bits (845), Expect = 8e-89, Method: Composition-based stats. Identities = 102/265 (38%), Positives = 170/265 (64%), Gaps = 8/265 (3%) Query: 66 GYSPLLTAEEE-------VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 LL+ E+ V ++ R +++ MI++NLRLVV IA++Y NRGL LD Sbjct: 381 NKVRLLSGEDSPGSFKALVAKIQKHERTANKAKQEMIKANLRLVVSIAKKYSNRGLQFLD 440 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 L++EGN+GL++AV+KFD +RG++FSTYATWW+RQ I RAI +Q RTIR+P+H+++ +N Sbjct: 441 LVQEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKI 500 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 RT R++ H++ EP+ EE++ +L V+ + +++++ + S+++P+G D D + Sbjct: 501 NRTLRQMLHEIGREPTLEELSARLGMNVEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCI 560 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL-GYEAATLEDVGREIGL 297 D++ PE+ D+++ K L L K+ +L RFG+ G + TLE+VG+ + Sbjct: 561 EDKRAVKPENAAVLADLREITTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNV 620 Query: 298 TRERVRQIQVEGLRRLREILQTQGL 322 TRER+RQI+ + LR+LR + + L Sbjct: 621 TRERIRQIEAKALRKLRHPSRARKL 645 Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 3/104 (2%) Query: 19 ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVY 78 E E + A+ E+ + ++ E + S Q D ++YL E+ LL+ E E+ Sbjct: 90 EQSDEEEADAAVSEENAAKDEEDESGMRSLDFGQ-TDDPIRMYLCEMSSVELLSREGEIE 148 Query: 79 FARRALRGDVASRRRMIESNLRLVVKIARR--YGNRGLALLDLI 120 A+R V R +IE+ + L ++ R N+ + L DLI Sbjct: 149 IAKRIKSEKVNMLRSLIEAPMVLRTFMSWRDDLVNQQVMLRDLI 192 >UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomycetales RepID=Q2J784_FRASC Length = 422 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 128/329 (38%), Positives = 189/329 (57%), Gaps = 34/329 (10%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE 74 A + G+E+ DE+ E SD+ A ++ A D ++YL EIG PLL A Sbjct: 90 ARLNAVGIELLDEE-----EASDDATAASRSTAEHAGTA--DLVRMYLREIGKVPLLNAA 142 Query: 75 EEVYFARRALRG---------------------------DVASRRRMIESNLRLVVKIAR 107 +EV ++R G A++++++ +NLRLVV +A+ Sbjct: 143 QEVELSKRVEAGLFAEYKLESVPDLPADLRRDLGLLVKDGHAAKQQLVSANLRLVVSVAK 202 Query: 108 RYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL 167 +Y RG+ LLDL++EGNLGLIRAVEKFD +G++FSTYATWWIRQ I RA+ +Q RTIR+ Sbjct: 203 KYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIGRALADQARTIRI 262 Query: 168 PIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLG 227 P+H+V+++N R R+L L EP+ EE+A +LD P++ V + R + S++T +G Sbjct: 263 PVHVVEQINKITRLQRQLVSTLGREPTDEELALELDMPIEQVVELRRYAQDTVSLETSVG 322 Query: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 D + L D + D P D M+ I L L+ ++REV+ RFGL + T Sbjct: 323 DDGDSVLGDFIEDSDATSPADAASYGAMQDEIENVLGGLSPREREVMRLRFGLADGKQHT 382 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREI 316 L +VG +GLTRER+RQI+ + LR LR+ Sbjct: 383 LAEVGNRLGLTRERIRQIERDTLRELRKP 411 >UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila RepID=Q6AQ51_DESPS Length = 534 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 118/311 (37%), Positives = 182/311 (58%), Gaps = 13/311 (4%) Query: 19 ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS-----PLLTA 73 + K VE + DL EEE+ S +R++D ++ E G S LL Sbjct: 228 AEDLSKRFRKIFVELIAGEGDLPEEEMRSPEELERLVDL--QFIRESGSSLQSLNELLKE 285 Query: 74 EEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 EE F + ++ ++ +NLRLV+ +++R+ NRGL DLI+EGN+GL++AVEK Sbjct: 286 VEEGRFISK------EAKEALVRANLRLVISVSKRFVNRGLQFSDLIQEGNIGLMKAVEK 339 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 FD RGF+FSTYATWWIRQ+I R I +Q RTIRLP+H+++ +N LR +++ + EP Sbjct: 340 FDYRRGFKFSTYATWWIRQSITRGIADQGRTIRLPVHMIETINRMLRVSKDFYLEEHREP 399 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253 S EE+A QL VD V L++ + S+DTP+G D E L D + D+ GP+ Sbjct: 400 SVEEVAGQLGTEVDKVKSALKIAKDAISLDTPVGDDGETYLGDFIVDKNCLGPDGFAMVA 459 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 +K+ + + L L+ ++ +VL R+G+L TLE+VGR +TRER+RQI+ + + +L Sbjct: 460 SLKECLSQVLSSLSPREEKVLKMRYGILEKREYTLEEVGRCFNVTRERIRQIEAQAISKL 519 Query: 314 REILQTQGLNI 324 + + L + Sbjct: 520 KHPSRCGDLKV 530 Score = 40.9 bits (95), Expect = 0.056, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 47 SQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRL 101 QG + D+ +Y+ E+G LL ++E A+ +G + +++S L + Sbjct: 69 KQGDSTAAADSMNIYMREMGSLKLLKYDDERKLAQTIEKGKKQVQFAVLQSTLAM 123 >UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria RepID=Q1J156_DEIGD Length = 532 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 126/316 (39%), Positives = 178/316 (56%), Gaps = 31/316 (9%) Query: 38 NDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA-------- 89 ND EE D + YL EIG PLLT EEE+ ARR G+ A Sbjct: 212 NDDEEERYFDDMPRAVSNDPVRQYLHEIGRVPLLTLEEEIALARRIEEGEEARKMLEEAG 271 Query: 90 --------------------SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIR 129 +R+ +IE+NLRLVV IA++Y RGL LDLI+EGN GLIR Sbjct: 272 DELDDRARRRLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIR 331 Query: 130 AVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKL 189 AVEKF+ R ++FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N RTAR+L +L Sbjct: 332 AVEKFEYRRRYKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQEL 391 Query: 190 DHEPSAEEIAEQL--DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPE 247 EP+ EEIAE + V + ++++ S++TP+G + + D + DE + P Sbjct: 392 SREPTYEEIAEAMGPGWDAAKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPV 451 Query: 248 DTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307 D + + + K L +L ++ VL R GL+ TLE+VG+ +TRER+RQI+ Sbjct: 452 DNAAKTLLSEELEKALSKLTEREALVLKFRKGLVDGREHTLEEVGQRFNVTRERIRQIEN 511 Query: 308 EGLRRLR-EILQTQGL 322 + LR+L+ +T+ L Sbjct: 512 KALRKLKYHESRTRKL 527 >UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L243_HALNC Length = 343 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 157/311 (50%), Positives = 225/311 (72%) Query: 18 DENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEV 77 +E + V D + + + + + E + +D +LYL ++ LLTAEEEV Sbjct: 31 EEELLAVDDVELDDDIDSPEKNEEELTTTFSASDSESVDPVRLYLRDVETERLLTAEEEV 90 Query: 78 YFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137 ++RRA GD ++R++MI NLRLV+KIARRY NRGL LLDLIEEGN+GL+RAVEKFDPE Sbjct: 91 IYSRRAQSGDESARQKMIVCNLRLVIKIARRYMNRGLDLLDLIEEGNIGLMRAVEKFDPE 150 Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197 RGFRFSTYATWWIRQTIER +MNQ+RT+RLP+H+VKE++ + R AR+++ + E +AE+ Sbjct: 151 RGFRFSTYATWWIRQTIERGLMNQSRTVRLPVHVVKEVHTFNRAARKIAQNQNAEVTAEQ 210 Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257 IA+ LD+PV++V +++ NER +S D+PL GD E +LLD++ D++ N P++ QD + Sbjct: 211 IADHLDRPVNEVLKIMAFNERQSSFDSPLKGDGEFSLLDLIPDQESNQPDELLQDAGVHG 270 Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 + + + +L +KQREVL RR+GL GYE TLE+VG +G+TRERVRQIQ+E +RRL+ + Sbjct: 271 FLDQLIAQLESKQREVLVRRYGLRGYETHTLEEVGNHLGVTRERVRQIQLEAVRRLKSLA 330 Query: 318 QTQGLNIEALF 328 + G+ E +F Sbjct: 331 KKAGVTAEVIF 341 >UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. EuI1c RepID=D1VBD5_9ACTO Length = 424 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 126/329 (38%), Positives = 186/329 (56%), Gaps = 31/329 (9%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE 74 A GVEV +E+ E+ + ++ G D ++YL EIG PLL A Sbjct: 89 ARLVAAGVEVVEEEDGAERSAAPSETGRVTAEHAGTA----DLVRMYLREIGRVPLLNAA 144 Query: 75 EEVYFARRALRG---------------------------DVASRRRMIESNLRLVVKIAR 107 +EV ++R G A++++++ +NLRLVV +A+ Sbjct: 145 QEVELSKRVEAGLFAEHKLATAADLEPELHRDLKLLVRDGEAAKQQLVSANLRLVVSVAK 204 Query: 108 RYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL 167 +Y RG+ LLDL++EGNLGLIRAVEKFD +G++FSTYATWWIRQ I RA+ +Q RTIR+ Sbjct: 205 KYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIGRALADQARTIRI 264 Query: 168 PIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLG 227 P+H+V+++N R R+L L EP+ EE+A +LD P++ V + R + S++T +G Sbjct: 265 PVHVVEQINKITRLQRQLVSTLGREPTDEELALELDMPLEQVVELRRYAQDTVSLETTVG 324 Query: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 D + L D + D P D M+ I L L+ ++REV+ RFGL + T Sbjct: 325 DDGDSVLGDFIEDSDATSPADAASYGAMQDEIDHVLGNLSPREREVMRLRFGLADGKQHT 384 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREI 316 L +VG +GLTRER+RQI+ + LR LR+ Sbjct: 385 LAEVGNRLGLTRERIRQIERDTLRELRKP 413 >UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicrobia RepID=B2UM02_AKKM8 Length = 688 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 107/270 (39%), Positives = 171/270 (63%), Gaps = 5/270 (1%) Query: 58 TQLYLGEIGYSPLLTAEEE----VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG 113 + +L E+ +TA+E R+ LR ++ M+E+NLRLV+ IA++Y NRG Sbjct: 412 LKEHLAELELRMWMTADEMGDAYQEL-RKWLREARRAKDEMVEANLRLVISIAKKYTNRG 470 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 L+ LDLI+EGN+GL++AVEKF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ Sbjct: 471 LSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 530 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 +N +R ++L + EP+ EEIAE++ PV+ V +L++ ++ S+ P+G + + Sbjct: 531 TINKLMRVQKQLVQEYGREPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTS 590 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 D + D+ P + +K+ I L L ++REV+ +RFGL TLE+VGR Sbjct: 591 FGDFIEDKAAENPMEEASFSFLKEKIKDVLDTLTDREREVIEQRFGLRDGSPRTLEEVGR 650 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQGLN 323 + +TRER+RQI+ + LR+LR + + Sbjct: 651 QFSVTRERIRQIEAKALRKLRHPTRISKIK 680 Score = 41.7 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDV 88 + D ++YL ++G LLT EEEV ++R + Sbjct: 240 LDDPVRMYLKQMGQVSLLTREEEVAISKRIEDAEQ 274 >UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteobacteria RepID=A8ZUC3_DESOH Length = 738 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 105/236 (44%), Positives = 162/236 (68%) Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 AS+ +I +NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+KF+ RG++FSTYAT Sbjct: 498 KASKSELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYAT 557 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I RAI +Q RTIR+P+H+++ +N +RT+R L + +EPS EEIAE+++ P++ Sbjct: 558 WWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQERGYEPSPEEIAEKMEIPLE 617 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V R+L++ S++TP+G + + L D + D+K P + ++ + K L L Sbjct: 618 KVRRVLKIAREPISLETPIGEEEDSHLGDFIEDKKFMIPSEAAVSMNLSEQTRKVLATLT 677 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 ++ +VL RFG+ TLE+VGR+ +TRER+RQI+ + LR+LR +++ L Sbjct: 678 PREEKVLRMRFGIGEKADHTLEEVGRDFAVTRERIRQIEAKALRKLRHPTRSKMLK 733 Score = 44.4 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Query: 32 EQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASR 91 E + + V D ++YL E+G LL+ E EV A++ G+ + Sbjct: 225 EDGAKSTTRGDSPVTYDSDPGSVTDTVKMYLREMGLVTLLSREGEVEIAKKIEAGEQEAL 284 Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNL 125 R M+++ + V I +A D I+ GNL Sbjct: 285 RGMLDTAVG-VESI--------IAYGDNIDVGNL 309 >UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomycetales RepID=Q0RDY7_FRAAA Length = 373 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 119/288 (41%), Positives = 172/288 (59%), Gaps = 27/288 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRG---------------------------DV 88 D ++YL EIG PLL A +EV ++R G Sbjct: 75 DLVRMYLREIGKVPLLNAAQEVELSKRVEAGLFAEHKLESDPDLPADLRRDLGLLVKDGH 134 Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 A++++++ +NLRLVV +A++Y RG+ LLDL++EGNLGLIRAVEKFD +G++FSTYATW Sbjct: 135 AAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATW 194 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RA+ +Q RTIR+P+H+V+++N R R+L L EP+ EE+A +LD P++ Sbjct: 195 WIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEELALELDMPIEQ 254 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V + R + S++T +G D + L D + D P D M+ I L LN Sbjct: 255 VVELRRYAQDTVSLETSVGDDGDSVLGDFIEDSDATSPADAASYGAMQDEIENVLGGLNP 314 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 ++REV+ RFGL + TL +VG +GLTRER+RQI+ + LR LR+ Sbjct: 315 REREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKP 362 >UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacteria RepID=RPOD_CAUCR Length = 652 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 98/242 (40%), Positives = 168/242 (69%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 ++ R +++ M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ RG+ Sbjct: 405 QKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 464 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N +RT+R++ H++ EP+ EE+AE Sbjct: 465 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAE 524 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 +L P++ V ++L++ + S++TP+G + + L D + D+ P D +++++ Sbjct: 525 KLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTT 584 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 + L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ +++ Sbjct: 585 RVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSR 644 Query: 321 GL 322 L Sbjct: 645 KL 646 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%) Query: 32 EQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASR 91 E D + A R D ++YL E+G LL+ E E+ A+R G Sbjct: 89 EVATRDENTTVIASDKPAAYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDTMI 148 Query: 92 RRMIESNL 99 R + ES L Sbjct: 149 RGLCESAL 156 >UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacteria RepID=RPOD_STRAU Length = 317 Score = 327 bits (839), Expect = 4e-88, Method: Composition-based stats. Identities = 121/304 (39%), Positives = 173/304 (56%), Gaps = 27/304 (8%) Query: 40 LAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG------------- 86 G D + YL EIG PLLTA EEV ARR G Sbjct: 3 PPRTRGAESGGAGPSADLFRQYLREIGRIPLLTAAEEVDLARRVEAGLFAEEKLGGAADL 62 Query: 87 --------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVE 132 ++RR+IESNLRLVV +A+RY RGL +LDL++EGNLGLIRAVE Sbjct: 63 DSQLAVDLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVE 122 Query: 133 KFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHE 192 KFD RG++FSTYATWWIRQ + RA+ +Q RTIR+P+H+V+ +N +R R + + +E Sbjct: 123 KFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYE 182 Query: 193 PSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQD 252 P+AEE+A L+ + V +LRL + S+ P+G + + AL D++ D P ++ Sbjct: 183 PTAEEVAVHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAF 242 Query: 253 DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRR 312 + + L L ++R+V+ R+GL TLE++GR G+TRER+RQI+ + L + Sbjct: 243 FLRCEHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNK 302 Query: 313 LREI 316 LR+ Sbjct: 303 LRDH 306 >UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteobacteria RepID=A9W0B8_METEP Length = 718 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 100/246 (40%), Positives = 169/246 (68%) Query: 77 VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 V ++ R +++ MIE+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ Sbjct: 467 VAMVQKGEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 526 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N +RT+R++ H++ EP+ E Sbjct: 527 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPE 586 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 E+AE+L P++ V ++L++ + S++TP+G + + L D + D+ P D +++ Sbjct: 587 ELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNVVLPIDAAIQSNLR 646 Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 ++ + L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ Sbjct: 647 ETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHP 706 Query: 317 LQTQGL 322 +++ L Sbjct: 707 SRSRKL 712 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIES 97 ++ T R D ++YL E+G LL+ E E+ A+R G A + ES Sbjct: 175 TTREPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCES 226 >UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8E5_COPPD Length = 360 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 119/325 (36%), Positives = 197/325 (60%), Gaps = 13/325 (4%) Query: 4 NTLKVHDLNED---AEFDENGVEVFDEKALV--EQEPSDNDLAEEELLSQGATQRVLDAT 58 N+L DL+ D +E G+ + E+ + E + L EEE ++V + Sbjct: 36 NSLNPEDLDVDEIDMFLEEKGISIIPEEPRIYGENVSYEQGLPEEE-------EQVRELM 88 Query: 59 QLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 Q+YL ++G LLTAE+E A+R + D A+R +I+ NLRLV+ IA++Y N+GL+ ++ Sbjct: 89 QVYLHDVGQYDLLTAEQERILAQRIEKNDAAAREELIKRNLRLVISIAKKYTNKGLSFME 148 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI+EGN+GLI+AVEKFD +G++FSTYATWWI+Q I RA+ +Q+R IR P+H+V+ + + Sbjct: 149 LIQEGNIGLIKAVEKFDWRKGYKFSTYATWWIKQAITRALADQSRLIRRPVHMVEAYHQF 208 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNE-RITSVDTPLGGDSEKALLDI 237 + EL ++L EP+ +E+AE L D V + +++ S+D +G + + D Sbjct: 209 QKKLNELYNQLGREPTVQELAEALGFSEDKVLALKQMSNPEPQSLDATIGDQDDSRVQDF 268 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 + D E + +++ ++ + + L LN ++RE++ R+GL+ TLE+VG + Sbjct: 269 VPDTGEGAADKYFWEEERRRVLEEVLSTLNKREREIIEMRYGLVDGVEHTLEEVGASFNI 328 Query: 298 TRERVRQIQVEGLRRLREILQTQGL 322 TRERVRQI+ + LR+LR + + L Sbjct: 329 TRERVRQIETKALRKLRHPTRIRKL 353 >UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JLG8_SYNJB Length = 320 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 115/302 (38%), Positives = 174/302 (57%), Gaps = 10/302 (3%) Query: 31 VEQEPSDNDLAEEELLSQG----ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG 86 V+ P E L G D+ ++L E+ PLL AE+EV R G Sbjct: 12 VQNSPPPLKRVEVRLSKPGNRATQASLSEDSVGVFLREMARYPLLNAEQEVKLGRLIAEG 71 Query: 87 DVA---SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143 A ++R ++ +NLRLVV IA++Y NRG+ LDLI+EG +GLIRA EKF+ ERG++FS Sbjct: 72 GAAGERAKRELVRANLRLVVSIAKKYLNRGVPFLDLIQEGTIGLIRAAEKFEYERGYKFS 131 Query: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD 203 TYA WWIRQ I RA+ NQ R +R+P+H+V++LN R REL+ L+ P+ EIAE L+ Sbjct: 132 TYAYWWIRQGITRAVANQGRLVRIPVHMVEKLNQVKRIRRELTETLNRRPTQAEIAEALE 191 Query: 204 KPVDDVS---RMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 D + +L + S+ TP+G + ++ L+ ++ D PE + + Sbjct: 192 ISPDKLDALLTLLEAGRQTLSLHTPVGKEEDRELMQLIEDANSLTPESQMDLHLLSAQLE 251 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 + L +L+ +++E+L R+GL TL ++G+ GL+RERVRQIQ +R+LR + + Sbjct: 252 EMLEQLSPREQEILKLRYGLKDGHLHTLSEIGQLFGLSRERVRQIQARAMRKLRHPRRQE 311 Query: 321 GL 322 L Sbjct: 312 IL 313 >UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZE6_ERYRH Length = 459 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 19 ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVY 78 E E K +P+ D E L++ D + YL E G EE + Sbjct: 151 EQAKEFIINKYKEIVDPAITDEELAERLTENQIGYFFDDFEAYLTENGD------EENLA 204 Query: 79 FARRALR---GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 F + + +RR +I +NLRLVV IA++Y RG+ LDLI+EGN+GL++AVEKFD Sbjct: 205 FLTNWVATYYDGLEARRILISANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLVKAVEKFD 264 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N R R L L EP+A Sbjct: 265 YTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLTRIQRSLVQTLGREPTA 324 Query: 196 EEIAEQL-DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 EEIA ++ + + V + ++ S++TP+G + + L D + D+ P++ + Sbjct: 325 EEIAAEMENITPEKVREIQKIALDPVSLETPIGEEDDSHLGDFIEDKDALSPDEYANNQL 384 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +K+ I L L ++ +VL RFGL TLE+VG+E +TRER+RQI+ + LR+L+ Sbjct: 385 LKEEIKMVLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLK 444 Query: 315 EILQTQGL 322 +++ L Sbjct: 445 HPTRSKRL 452 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Query: 14 DAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTA 73 D + D E +++ + + + E L+ R+ D ++YL EIG LL A Sbjct: 78 DVDDDFISDEAEEDEIFDDSLNKVDLSSYENELTSANMVRINDPVKMYLKEIGRVNLLDA 137 Query: 74 EEEVYFARRALRGDVASRRRMIESNLRLV 102 ++E ARR G ++ +I +V Sbjct: 138 KDEPEIARRLQEG-EQAKEFIINKYKEIV 165 >UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRI0_HIRBI Length = 683 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 98/242 (40%), Positives = 167/242 (69%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 ++ R +++ M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ RG+ Sbjct: 436 QKGEREARVAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 495 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N +RT R++ H++ EP+ EE+AE Sbjct: 496 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTQRQMLHEIGREPTPEELAE 555 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 +L P++ + ++L++ + S++TP+G D + L D + D+ P D +++++ Sbjct: 556 KLGLPLEKIRKVLKIAKEPISLETPIGDDEDSNLGDFIEDKMALLPVDAAIQSNLRETTT 615 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 + L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ +++ Sbjct: 616 RVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSR 675 Query: 321 GL 322 L Sbjct: 676 KL 677 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 24/46 (52%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIES 97 R D ++YL E+G LL+ E E+ A+R G A R + ES Sbjct: 116 DRTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGRDAMIRGLCES 161 >UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacteria RepID=RPOD_RICBR Length = 641 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 102/248 (41%), Positives = 170/248 (68%), Gaps = 1/248 (0%) Query: 77 VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 V +++ R + +++ MIE+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ Sbjct: 375 VNAIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEY 434 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 RG++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N +RT+R++ ++L +EP+ Sbjct: 435 RRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKIIRTSRQMLNELGYEPTPA 494 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLG-GDSEKALLDILADEKENGPEDTTQDDDM 255 EIA +L P+D V +++++ + S++ P+G GD L D + D+ P D ++ Sbjct: 495 EIAARLSMPIDKVRKVMKIAKEPISLENPVGDGDDNSYLGDFIEDKNAVAPIDAAIQSNL 554 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 ++ + L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ Sbjct: 555 REVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQH 614 Query: 316 ILQTQGLN 323 ++++ LN Sbjct: 615 PIRSKKLN 622 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 12/131 (9%) Query: 2 SQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLY 61 S+ + + D NED + +E+ + + ++ D E+ + D +LY Sbjct: 52 SEAEVDILDTNEDDAIKIDDMEMEEGFKI----STNIDHEPEDETEEENIGTTDDPVRLY 107 Query: 62 LGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIE 121 L ++G LLT E EV A+R G + S IA + DL+ Sbjct: 108 LKDMGGVDLLTRENEVEIAKRIEEGRKTLIAALCRS------PIAMDKFRKW--YADLVN 159 Query: 122 EGNLGLIRAVE 132 E N+ L ++ Sbjct: 160 ENNMLLRDLID 170 >UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci RepID=C1CW22_DEIDV Length = 547 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 122/314 (38%), Positives = 176/314 (56%), Gaps = 30/314 (9%) Query: 39 DLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA--------- 89 D EE+ D + YL EIG LLT EEE+ ARR G+ A Sbjct: 229 DDDEEKYFDDMPRAVSNDPVRQYLHEIGRVSLLTLEEEIALARRIEEGEEARKLLEEDVE 288 Query: 90 ------------------SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAV 131 +R+ +IE+NLRLVV IA++Y RGL LDLI+EGN GLIRAV Sbjct: 289 LDDRGRRRLMRQMEDGANARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIRAV 348 Query: 132 EKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDH 191 EKF+ R ++FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N RTAR+L +L Sbjct: 349 EKFEYRRRYKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSR 408 Query: 192 EPSAEEIAEQL--DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDT 249 E + EEIAE + V + ++++ S++TP+G + + D + DE + P + Sbjct: 409 EATHEEIAEAMGPGWDAAKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPVEN 468 Query: 250 TQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEG 309 + + + K L +L ++ VL R GL+ TLE+VG+ +TRER+RQI+ + Sbjct: 469 AAKTLLSEELEKALSKLTEREAMVLKFRKGLVDGREHTLEEVGQRFSVTRERIRQIENKA 528 Query: 310 LRRLR-EILQTQGL 322 LR+L+ +T+ L Sbjct: 529 LRKLKYHESRTRKL 542 >UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium difficile RepID=C9XJA1_CLODC Length = 301 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 105/283 (37%), Positives = 176/283 (62%), Gaps = 3/283 (1%) Query: 43 EELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV 102 E + G++ V +A ++YL EI +L+A EEV A+ + ++ + I SN RLV Sbjct: 17 ENYICVGSSN-VSNAMKMYLKEIEEYKMLSAGEEVELAKEIINSSSVAKEKFINSNYRLV 75 Query: 103 VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQT 162 V IA+RY + +LDLI+ GN+GLI+AVEK+D ++G++FSTYATWWI+Q+I R I + Sbjct: 76 VSIAKRYKRDSIDMLDLIQAGNIGLIKAVEKYDYKKGYKFSTYATWWIKQSITRYIDDCE 135 Query: 163 RTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSV 222 TIR+PIH+ + +N + +EL + L EP+ +EIA+ VD V +LR ++ + S+ Sbjct: 136 NTIRIPIHLHQRINFVKKKKQELLNVLLREPTIDEIADACGLEVDKVLELLRRDKNVVSL 195 Query: 223 DTPLGGDSEKALLDILADEKE--NGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL 280 DTPL D + +L++ + + + + + ++K+ I + L L ++++VL RFG+ Sbjct: 196 DTPLKEDEDSSLVEFIPSDADFKDVVIHEVEQHNLKEKIEELLTGLGEQEQQVLRMRFGI 255 Query: 281 LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 + TLE +G+ G+TRER+RQI+ + +R+LR + + L Sbjct: 256 DDDDPKTLEQIGKVFGVTRERIRQIEAKAIRKLRHPSKLKQLK 298 >UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellular organisms RepID=RPOD_XYLFT Length = 618 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 101/262 (38%), Positives = 171/262 (65%), Gaps = 3/262 (1%) Query: 64 EIGYSPLLTAEEEVYFARRALRGDVAS---RRRMIESNLRLVVKIARRYGNRGLALLDLI 120 ++ LT + R + G+ + ++ M+E+NLRLV+ IA++Y NRGL LDLI Sbjct: 350 DLEKVNSLTLADIKEINRMMVYGEAKASKAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 409 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 +EGN+GL++AV KF+ RGF+FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R Sbjct: 410 QEGNIGLMKAVCKFEHRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR 469 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD 240 +R++ + E + EE+A+++D P D + +++++ + S++TP+G D + L D + D Sbjct: 470 ISRQMLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIED 529 Query: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 P DTT + ++ +++ + L L ++ +VL RFG+ TLE+VG++ +TRE Sbjct: 530 PNVESPVDTTTNVNLSETVREVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRE 589 Query: 301 RVRQIQVEGLRRLREILQTQGL 322 R+RQI+ + LR+LR +++ L Sbjct: 590 RIRQIEAKALRKLRHPSRSEQL 611 Score = 45.2 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 21/46 (45%) Query: 49 GATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRM 94 R D ++Y+ E+G LLT E E+ A+R G + + Sbjct: 97 TEAGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLSEVQAAL 142 >UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JCN6_9BACT Length = 377 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 111/266 (41%), Positives = 176/266 (66%), Gaps = 1/266 (0%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 ++ + YL EIG LLT +EV ARR G+ +R MI+SNLRLVVKIA Y + GL Sbjct: 79 NSIRTYLQEIGRIDLLTPAQEVTLARRIQAGEKEARDLMIKSNLRLVVKIAHDYKDFGLP 138 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 +LDLI EGN+GL++AVE+FDP++G + STYA WWI+Q+I+RA+ NQ++TIRLP+H+V ++ Sbjct: 139 VLDLISEGNIGLVKAVERFDPDKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKI 198 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA-L 234 + + A L+ +L EP+ +E+AE L+ PV+ VS + ++ R TS++ P+G D Sbjct: 199 SRMRKMALMLTEELGREPTDQELAEMLEMPVNKVSHLKSVSVRPTSLNAPVGEDGNSTEF 258 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 +I+ D+ P + + ++ + + + L ++ E++ RFGL G TLE+VG+ Sbjct: 259 GEIVGDDNAPTPYENLHEKSLRGDLHEMIDGLEDREAEIIRLRFGLNGDSPLTLEEVGQV 318 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQ 320 +TRERVRQ+Q L ++R+I+ ++ Sbjct: 319 FDITRERVRQLQNIALSKMRKIMASK 344 >UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphaproteobacteria RepID=RPOD_RHOCA Length = 674 Score = 323 bits (828), Expect = 6e-87, Method: Composition-based stats. Identities = 108/311 (34%), Positives = 191/311 (61%), Gaps = 8/311 (2%) Query: 20 NGVEVFDEKALVEQEPS-----DNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE 74 N E DE E +P+ A + ++ ++ + + ++G + Sbjct: 358 NRREFIDEYRGYELDPTWMDRMSAKPARAWVTLFEKSRDKVEDLRHEMAQVGQYVGVDIS 417 Query: 75 EEVYFARRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAV 131 E + +G+ +R+ M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV Sbjct: 418 EFRRIVNQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 477 Query: 132 EKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDH 191 +KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N +RT R++ H++ Sbjct: 478 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGR 537 Query: 192 EPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQ 251 EP+ EE+AE+L P++ V +++++ + S++TP+G + + L D + D+ P D+ Sbjct: 538 EPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAI 597 Query: 252 DDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLR 311 +++K++ + L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR Sbjct: 598 QENLKETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALR 657 Query: 312 RLREILQTQGL 322 +L+ +++ L Sbjct: 658 KLKHPSRSRKL 668 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 22/46 (47%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIES 97 R D ++YL E+G LL+ E E+ A+R G + ES Sbjct: 109 DRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCES 154 >UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria RepID=B2V7P9_SULSY Length = 590 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 109/276 (39%), Positives = 171/276 (61%), Gaps = 1/276 (0%) Query: 48 QGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIAR 107 + T ++ D + +IG P + + + ++ ++++NLRLVV IA+ Sbjct: 310 RTETLKLKDEIEEIKQKIGTIPS-EFDHVLDLIQLGRNEINNVKQVLVKANLRLVVSIAK 368 Query: 108 RYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL 167 +Y NRGL LDLI+EGN+GL++AV+K+D ++GF+FSTYATWWIRQ I RAI +Q RTIR+ Sbjct: 369 KYTNRGLQFLDLIQEGNIGLMKAVDKYDYKKGFKFSTYATWWIRQAITRAIADQARTIRI 428 Query: 168 PIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLG 227 P+H+++ +N LR +R L +L EP+ EEIA++ P D V ++LR ++ S++TP+G Sbjct: 429 PVHMIETINKLLRISRTLVQELGREPTPEEIAKKAGMPADKVRKILRTSQDPVSLETPIG 488 Query: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 D E L D + D+ PE ++ + + L L+ ++ +VL RFGL T Sbjct: 489 SDEESHLGDFIEDKTVLSPEQHMLKQALRLQLDEVLSTLSEREEQVLRYRFGLEDDTEHT 548 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 LE VG+ G+TRER+RQI+ + LR+LR + + L Sbjct: 549 LEQVGKRFGVTRERIRQIEAKALRKLRHPHRAKYLK 584 Score = 50.9 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 2/90 (2%) Query: 7 KVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIG 66 + L E +E ++V D++ + ++ ++ +L + D +LYL E+G Sbjct: 42 NIESLIE--YLNELNIDVRDDEKIKSEDEDISEHLGIDLSDDDVWNKADDPVKLYLREMG 99 Query: 67 YSPLLTAEEEVYFARRALRGDVASRRRMIE 96 PLL +EE+ ++ RG R ++ Sbjct: 100 KIPLLKRDEEIKYSMEIERGRKKVFRGLLR 129 >UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteobacteria RepID=B3R1P5_CUPTR Length = 395 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 147/301 (48%), Positives = 190/301 (63%), Gaps = 2/301 (0%) Query: 30 LVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA 89 E ++ + T+ D Q YL I PLL+A EE++F+ A GD A Sbjct: 95 GAENGTESAAAEHDDFRTVLHTELAADTVQHYLNRISIKPLLSAPEELHFSTLAKDGDFA 154 Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +R+ MIE NLRLVV IA+ Y NRG+ LLDLIEEGNLGL+ A+EKFDP RGFRFSTYATWW Sbjct: 155 ARQVMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPSRGFRFSTYATWW 214 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKL--DHEPSAEEIAEQLDKPVD 207 IRQ+IERAIMNQ RT+RLP+H+++ELN LR R L + S E+IA L K D Sbjct: 215 IRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKGGTDGRDASLEDIAHLLGKTPD 274 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 +V +L LNE TS+DTP D +LLD L+DE P+ +++ + WL L+ Sbjct: 275 EVQDVLALNEHTTSLDTPFDLDPGSSLLDFLSDEHNAAPDQEVAHRELEGLMKLWLARLS 334 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEAL 327 K R V+ RRFGL E ATLE++ E+GLTRERVRQIQ E L +L+ +QG+ +A+ Sbjct: 335 EKHRYVVERRFGLNHIEPATLEELAEEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAV 394 Query: 328 F 328 Sbjct: 395 L 395 >UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM33_ACIFE Length = 589 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 111/248 (44%), Positives = 165/248 (66%), Gaps = 2/248 (0%) Query: 77 VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 R GD A + + E+NLRLVV IA+RY RG+ LDLI+EGNLGLI+AVEKFD Sbjct: 339 RLLHRMEFCGDNAKKC-LSEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDY 397 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R +R+L +L EP+ E Sbjct: 398 NKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPE 457 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 EIA+++D V+ V + ++ + S++TP+G + + L D + D++ P D ++ Sbjct: 458 EIAKEMDVSVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQEAPSPADAASYTLLQ 517 Query: 257 QSIVKWL-FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 + + K L L+A++R VL RFGL+ TLE+VG+ G+TRER+RQI+ + LR+LR Sbjct: 518 EQLGKVLQEHLSARERRVLELRFGLMDGRTRTLEEVGQYFGVTRERIRQIEAKALRKLRS 577 Query: 316 ILQTQGLN 323 +++ L Sbjct: 578 PKRSKPLK 585 Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 7/95 (7%) Query: 2 SQNTLKVHDLNE-DAEFDENGVEVF------DEKALVEQEPSDNDLAEEELLSQGATQRV 54 +++T+ V +++ ++ E +EV +E ++++ D +E LS V Sbjct: 97 NEDTVSVDEMDAIYSKLAEKNIEVVDDGAEDEEPETIDEDELKVDESELANLSVPEGVIV 156 Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA 89 D ++YL EIG PLL ++E+ A+RA +G+ A Sbjct: 157 DDPVRMYLKEIGRVPLLAGDDEIKLAKRADKGNQA 191 >UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteria RepID=C1F1D9_ACIC5 Length = 597 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 186/304 (61%), Gaps = 9/304 (2%) Query: 22 VEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFAR 81 +E + + S ++ ++E Q + L ++ L+ + R Sbjct: 290 LERQIRSLDQKYDQSKSEELKKEYRRQQKNCKTD------LEKLEEEAGLSIADLKRTQR 343 Query: 82 RALRGDVAS---RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPER 138 ++GD+ + +R +IE+NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+KF+ R Sbjct: 344 EIIQGDMDAEQAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR 403 Query: 139 GFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEI 198 G++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N +RT+R+L +L EP++EEI Sbjct: 404 GYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQELGREPTSEEI 463 Query: 199 AEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQS 258 A ++D PV V ++L++ + S++TP+G + + L D + D + P + ++K+ Sbjct: 464 ARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDSQAVSPSEAVISVNLKEY 523 Query: 259 IVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318 + L L ++ V+ RFGL TLE+VG+ +TRER+RQI+ + LR+LR + Sbjct: 524 TSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLRHPSR 583 Query: 319 TQGL 322 ++ L Sbjct: 584 SRKL 587 Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%) Query: 4 NTLKVHDLNEDAEFDE-------NGVEVFD--EKALVEQEPSDNDLAEEELLSQGATQRV 54 N L D+ + D+ G+++ + K + ++ E L+ G ++ Sbjct: 68 NDLIPGDMTSPEDLDDLMTTIGTQGIDILEGSPKLGNDGFDDEDSDDVELDLTPGTLEKT 127 Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRG 86 D ++YL E+G PLLT E EV A+R RG Sbjct: 128 NDPVRMYLREMGTVPLLTREGEVEIAKRIERG 159 >UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=Q3AWQ6_SYNS9 Length = 451 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 41/308 (13%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRA-------------------------------- 83 D+ ++YL EIG LL +EE+ AR+ Sbjct: 141 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEM 200 Query: 84 --------LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 L ++ +M++SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EKFD Sbjct: 201 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 260 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 E+G++FSTYATWWIRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS + +P+ Sbjct: 261 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 320 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 EEIAE ++ ++ + + + + S++TP+G + + L D + + PE + + Sbjct: 321 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD-IENPEQDVAKNLL 379 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 ++ + L L+ ++R+VL R+GL TLE++G+ +TRER+RQI+ + LR+LR Sbjct: 380 REDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRH 439 Query: 316 ILQTQGLN 323 + L Sbjct: 440 PNRNGVLK 447 >UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Proteobacteria RepID=RPOD_AGRT5 Length = 684 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 169/246 (68%) Query: 77 VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 V ++ R +++ M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ Sbjct: 433 VSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 492 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N +RT+R++ H++ EP+ E Sbjct: 493 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPE 552 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 E+AE+L P++ V ++L++ + S++TP+G + + L D + D+ P D +++ Sbjct: 553 ELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLR 612 Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 ++ + L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ Sbjct: 613 ETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHP 672 Query: 317 LQTQGL 322 +++ L Sbjct: 673 SRSRKL 678 Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%) Query: 26 DEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALR 85 +E++ + A + T R D ++YL E+G LL+ E E+ A+R Sbjct: 97 NEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEA 156 Query: 86 GDVASRRRMIES 97 G + ES Sbjct: 157 GRETMISGLCES 168 >UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=Q7NB90_MYCGA Length = 644 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 112/328 (34%), Positives = 194/328 (59%), Gaps = 13/328 (3%) Query: 8 VHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGAT--QRVLDATQLYLGEI 65 + +L ++ E+ VE Q+ S+ D ++L+S+GA+ +V D + +LG + Sbjct: 307 LEELKDNKIKLEDNVEEKISLFRKNQDLSEIDKNLDDLISKGASTKDKVEDNVKAFLGTL 366 Query: 66 GYSPLLTAEEEVYFARRALRGDVA----SRRRMIESNLRLVVKIARRYGNRGLALLDLIE 121 G S +L EE+ A+ D + +++ SNLRLV IA++Y NRGL +DLI+ Sbjct: 367 GSSKILNFGEEIQIAKLLGSTDPETREYAINQLVTSNLRLVTSIAKKYLNRGLDFVDLIQ 426 Query: 122 EGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRT 181 EG++GL++A+ KF+ + G +FSTYATWWIRQ I RAI +Q RT+R+P+H+V+ +N ++T Sbjct: 427 EGSIGLMKAISKFNYKLGNKFSTYATWWIRQAITRAIADQARTVRIPVHMVETINKLIKT 486 Query: 182 ARELSHKLDHEPSAEEIAEQL-----DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLD 236 R L+ +L +P+ EE+ E + V+ + +LN+ S+D P+G D E +D Sbjct: 487 ERMLTQQLGRDPTLEELTEAMGGQVNGFTPKKVADIKKLNQEPVSLDKPIGHDEESQFVD 546 Query: 237 ILADEKENGPEDTTQDDDMKQSIVKW-LFELNAKQREVLARRFGLLGY-EAATLEDVGRE 294 + D P++ T+ + + I + + L K+ +++ R+GL + + TLE+VG++ Sbjct: 547 FVKDRDILKPDEYTEKLIVTEHINELFINTLTKKEEQIIRMRYGLHPWHQQMTLEEVGQK 606 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGL 322 +TRER+RQI+ + LR+L+ + L Sbjct: 607 FNVTRERIRQIESKALRKLKHPSKNARL 634 >UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2H8_LISDA Length = 294 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 142/283 (50%), Positives = 199/283 (70%), Gaps = 2/283 (0%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY 109 T D QLYL +I PLLT +EE+ ++R+AL GD S++ MIESNLRLVV IA++Y Sbjct: 10 TTSFDNDVIQLYLKDIALKPLLTKDEEILYSRKALVGDAKSKKVMIESNLRLVVSIAKKY 69 Query: 110 GNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 G+ L D+I+EGN+GLI AVEKFDPERGFRFSTYATWWI+QTIERAI NQ RTIRLP+ Sbjct: 70 RGSGMQLSDMIDEGNIGLITAVEKFDPERGFRFSTYATWWIKQTIERAIHNQARTIRLPV 129 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD 229 H+ KE+N LRT ++L + EP+ EE+A++LDK V+D+S +L + + S D + + Sbjct: 130 HVSKEINTILRTHKQLMKTNNSEPTHEEVADELDKSVEDISALLSYDAPVMSFDQTISSE 189 Query: 230 S--EKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 + + ++D+ +NGP+ +D+++ + L LN + RE+L RRFGL+GYEA T Sbjct: 190 DSNSQTMASFISDDSDNGPDAQIDKNDIQKLTLTMLEGLNPRDREILCRRFGLMGYEAQT 249 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 L+ V E+GLTRER+RQ+QV L +L+ +LQ + ++E LF E Sbjct: 250 LQQVAEEVGLTRERIRQLQVSSLNKLKNVLQREKYDLELLFAE 292 >UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK63_9BACT Length = 626 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 98/236 (41%), Positives = 162/236 (68%) Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 ++ ++IE+NLRLVV IA++Y NRGL LDLI+EGN+GL++AVEKF+ +RG++FSTYAT Sbjct: 387 EKAKSKLIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFEYKRGYKFSTYAT 446 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I RAI +Q RTIR+P+H+++ +N ++ R+L + EP+ EEI+ ++D PV+ Sbjct: 447 WWIRQAITRAIADQARTIRIPVHMIETINKMMKITRQLQQDMGREPTPEEISSKMDIPVE 506 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 + +++++ + S++TP+G D + +L D + D+ P + +K+ + L L+ Sbjct: 507 KIKKVMKIAKEPVSLETPIGEDEDSSLGDFIEDKSAKNPSEEVTYLKLKEHTKQILETLS 566 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR+LR +++ L Sbjct: 567 HREASVLKLRFGIECDSDHTLEEVGKQFNVTRERIRQIEAKALRKLRHPTRSRILK 622 Score = 44.0 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 16/97 (16%) Query: 9 HDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQ----------------GATQ 52 +L +D E E+ A ++ + D+ + + L S + Sbjct: 32 ENLPDDILSTELIDEIMMLLAQLKIDVIDSKVDKPGLYSADDDDDDEDSISLLKEVEESI 91 Query: 53 RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA 89 D +LYL E+G LL EEE+ A+ G Sbjct: 92 STDDPVRLYLKEMGNIALLNREEEIEVAKEIEEGQRK 128 >UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicrobia RepID=B1ZU80_OPITP Length = 353 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 114/300 (38%), Positives = 186/300 (62%), Gaps = 2/300 (0%) Query: 23 EVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDA-TQLYLGEIGYSPLLTAEEEVYFAR 81 E + + + + L + + ++ + QLYL EIG + LLT +EE+ A+ Sbjct: 15 ETYTAPTVELPDAPPSFLEKPDRVADVPVAHGDRSNLQLYLQEIGKTALLTIDEEISLAK 74 Query: 82 RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 R +GD A+R MI++NLRLVVKIA Y + GL LLDLI EGN+GLI+AVE+FDP +G + Sbjct: 75 RIRKGDKAARDHMIKANLRLVVKIAMDYKDFGLPLLDLISEGNIGLIKAVERFDPRKGGK 134 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 STYA WWI+Q+I+RA+ NQ++TIRLP+H+V +++ RTA L+ +L EP+ EE+A + Sbjct: 135 LSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKISKMRRTAMALTEELGREPTDEELAIE 194 Query: 202 LDKPVDDVSRMLRLNERITSVDTPLGGDSEK-ALLDILADEKENGPEDTTQDDDMKQSIV 260 L P V+ + ++ R S+D P+G + + +I+ D+ P + ++ ++ + Sbjct: 195 LQIPTSKVAHLKSVSVRPASLDAPVGEEGDSATFGEIVGDDNAVSPFEGLREKNLNSDLH 254 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 + L+ ++ E++ RFGL G + TLE+VGR +TRER+RQ++ L ++R+ + Sbjct: 255 AMVASLDEREAEIIRLRFGLDGKDELTLEEVGRRFHVTRERIRQLEYLALSKMRKAMAKH 314 >UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A975_9BACT Length = 631 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 103/270 (38%), Positives = 178/270 (65%), Gaps = 3/270 (1%) Query: 57 ATQLYLGEIGYSPLLTAEEEVYFARR---ALRGDVASRRRMIESNLRLVVKIARRYGNRG 113 A L EI + + + R+ +R ++ M+E+NLRLV+ IA++Y NRG Sbjct: 296 AIHARLREIEVEQRIEPAQLIEVVRKTNVHIREAHQAKTEMVEANLRLVISIAKKYTNRG 355 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 L+ LDLI+EGN+GL++AVEKF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ Sbjct: 356 LSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 415 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 LN ++ ++L + HEP+ EE+A++++ PV+ V +++++ ++ S+ +P+G + + Sbjct: 416 TLNKVMQVQKQLLQEFGHEPTPEEVADEMNLPVERVQQIMKMAQQPISLQSPVGDGDDTS 475 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 D + D+ P D T +++ I+ L L ++R+VL+ RFGL+ + TLE+VG+ Sbjct: 476 FGDFIEDKSAENPYDMTAYSLLREKIIDVLDSLTERERKVLSLRFGLVDGYSRTLEEVGK 535 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQGLN 323 + +TRER+RQI+ + LR++R + + L+ Sbjct: 536 QFKVTRERIRQIEAKALRKMRHPTRIRQLH 565 Score = 53.6 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 6/100 (6%) Query: 4 NTLKVHDLNEDAEFDE-----NGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLD-A 57 N + E D +E+ + ++ +EE S+ + +LD Sbjct: 60 NEALPESVENQEEIDNVLSILQNLEIEILEPDQVEDYKQRQEEQEEEESRTSNNDILDDP 119 Query: 58 TQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIES 97 ++YL ++G PLLT E+EV ++R + ++ + E+ Sbjct: 120 VRMYLKQMGQVPLLTREQEVEISKRIETAESKAQEALFEA 159 >UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=A0L5T1_MAGSM Length = 683 Score = 320 bits (821), Expect = 5e-86, Method: Composition-based stats. Identities = 108/325 (33%), Positives = 191/325 (58%), Gaps = 12/325 (3%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 ++Q +K + E +E+ A P + EL+ + QL Sbjct: 362 VTQCNVKKPEFIEQFTGNESDTTWIQNFAKTRSAPWKRLYEQSELICEA---------QL 412 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDV---ASRRRMIESNLRLVVKIARRYGNRGLALL 117 + I T + ++ + G+ +++ M+E+NLRLV+ IA++Y NRGL L Sbjct: 413 VIRSIEEEAGQTVADLKKCNKKLMDGERRANQAKKEMVEANLRLVISIAKKYTNRGLQFL 472 Query: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177 DLI+EGN+GL++AV+KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N Sbjct: 473 DLIQEGNIGLMKAVDKFEWRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 532 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 +RT+R++ ++ EP+ EEIAE++ ++ V ++L++ + S++TP+G + + L D Sbjct: 533 LVRTSRQMVQEMGREPTPEEIAERMSMSLEKVRKVLKIAKEPISLETPVGDEEDSHLGDF 592 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 + D+ P + +++ + + L L +++ VL RFG+ TLE+VG++ + Sbjct: 593 IEDKSMLSPSEHAIMSNLRDTTGRVLQTLTSREEHVLRMRFGIGLPTDHTLEEVGKQFNV 652 Query: 298 TRERVRQIQVEGLRRLREILQTQGL 322 TRER+RQI+ + LR+LR +++ L Sbjct: 653 TRERIRQIEAKALRKLRHPTRSRKL 677 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Query: 7 KVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIG 66 + L++D DE + + D + ++ ++ L + + + D ++YL E+G Sbjct: 83 NLDSLDDD--VDEEILGISDFDSEDDESDDEDGLRSDGAIEDIDLGKTDDPVRMYLREMG 140 Query: 67 YSPLLTAEEEVYFARRALRGDVASRRRM 94 LLT E E+ A+R G + Sbjct: 141 SVELLTREGEIAIAKRIEEGCNEVIATI 168 >UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Proteobacteria RepID=RPOD_COXBU Length = 698 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 101/265 (38%), Positives = 166/265 (62%), Gaps = 3/265 (1%) Query: 62 LGEIGYSPLLTAEEEVYFARRALRGDVA---SRRRMIESNLRLVVKIARRYGNRGLALLD 118 L ++ L +E RR G+ +++ MIE+NLRLV+ IA++Y NRGL LD Sbjct: 427 LAQLEEQNNLNIQEIKEINRRVAIGEAKSRRAKKEMIEANLRLVISIAKKYTNRGLQFLD 486 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI+EGN+GL++AV+KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N Sbjct: 487 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 546 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 R +R++ + E + EE+ ++D P + V ++L++ + S++TP+G D + L D + Sbjct: 547 NRISRQILQETGIEATPEELGRRMDMPEEKVRKVLKIAKEPISMETPIGEDEDSNLGDFI 606 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D P D + ++ + L L ++ +VL RFG+ TLE+VG++ +T Sbjct: 607 EDINMESPVDFATSAGLMEATREILSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVT 666 Query: 299 RERVRQIQVEGLRRLREILQTQGLN 323 RER+RQI+ + LR+LR + + L+ Sbjct: 667 RERIRQIEAKALRKLRHPSRAEKLH 691 Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%) Query: 16 EFDENGVEVFDEKA------LVEQEPSDNDLAEEELLSQGATQ-RVLDATQLYLGEIGYS 68 E G++VF+ L E SD+D E++ AT+ R D ++Y+ E+G Sbjct: 138 RLTEMGIKVFEIPPDADSLLLEEDTQSDDDEINEDVAEVLATETRTTDPVRMYMREMGSV 197 Query: 69 PLLTAEEEVYFARRALRG 86 LLT E E+ A+R G Sbjct: 198 ELLTREGEIVIAKRIEEG 215 >UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromonadales RepID=B9M4Z2_GEOSF Length = 358 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 126/273 (46%), Positives = 184/273 (67%) Query: 53 RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNR 112 DA +LYL EI + LLTA+EE A R RGD A+R +MIESNLRLVVKIA+RY NR Sbjct: 80 HFDDAIKLYLREIQKTKLLTADEEKELAARIDRGDKAARDKMIESNLRLVVKIAKRYINR 139 Query: 113 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172 GL LDLIEEGN+GLI+AVE+F + RFSTYATWWIRQ+IERA++NQ+RTIRLP+H+ Sbjct: 140 GLPFLDLIEEGNMGLIKAVERFKLSKECRFSTYATWWIRQSIERALVNQSRTIRLPVHVS 199 Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232 ++N LR REL K++ EPS +E+A ++ + R++ L ++ S++ P+G +++ Sbjct: 200 DDINKMLRITRELLQKINREPSIKEVATAMEVNSAYIRRLMVLLKKTYSIERPMGENNDY 259 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 L+D + D P + +D + + + KW L+ ++++L RFGL + TL+ +G Sbjct: 260 FLIDTIEDTSTVSPAELLEDVNRYEMVSKWFDTLSDNEKKILTLRFGLDDKDPQTLDTIG 319 Query: 293 REIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 R G+TRER+RQI+ + L +LR+I++ L Sbjct: 320 RSFGVTRERIRQIEAKSLEKLRKIMEATELAAR 352 >UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacteria RepID=RPOD_LEPIC Length = 585 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 100/265 (37%), Positives = 165/265 (62%), Gaps = 3/265 (1%) Query: 62 LGEIGYSPLLTAEEEVYFARRALRGDVA---SRRRMIESNLRLVVKIARRYGNRGLALLD 118 L + T +E + + ++G+ +++ ++++NLRLVV IA+RY NRG+ D Sbjct: 316 LRRMEQEAGSTVQEIKDWGEKIIKGEREISQAKKELVKANLRLVVSIAKRYANRGMHFFD 375 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI+EGN+GLI+AV+KF+ ++G++FSTYATWWIRQ I RAI +Q RTIR+P+H+++++N Sbjct: 376 LIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKV 435 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 +R R + +P+ EEIAE+L PV V + + S++ P+G + + L D + Sbjct: 436 IRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFI 495 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D + P + + + I + L L A++++V+ RFGL TLE+VG + +T Sbjct: 496 PDTEVETPVNAAASSILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVT 555 Query: 299 RERVRQIQVEGLRRLREILQTQGLN 323 RER+RQI+ + LRRLR +++ L Sbjct: 556 RERIRQIEAKALRRLRHPSRSKKLK 580 Score = 51.3 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 7/88 (7%) Query: 17 FDENGVEVFDEKALVEQEPS-------DNDLAEEELLSQGATQRVLDATQLYLGEIGYSP 69 E G+E+ +E EP+ D+ A ++ S +T D +LYL EIG Sbjct: 49 LHEMGIEIVEEYTRNTLEPASTLVPKDDSKPARKKKESSASTSGSEDPIKLYLREIGKVS 108 Query: 70 LLTAEEEVYFARRALRGDVASRRRMIES 97 L++ E EV+ A+R +G+ ++ S Sbjct: 109 LISGETEVFLAKRIEKGEKIIEETILSS 136 >UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptosporangineae RepID=D2AWC8_STRRD Length = 452 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 109/294 (37%), Positives = 172/294 (58%), Gaps = 27/294 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRG---------------------------DV 88 D+ YL IG LLTA +EV A+R G Sbjct: 154 DSVHTYLKSIGRRTLLTAAQEVELAKRIEAGLYAESKLEAEPGLSAAARDDLEWVAEDGR 213 Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 ++ M+E+NLRLVV +A++Y +RG+ALLD+++EGNLGLIRAVEKFD +G++FSTYA W Sbjct: 214 RAKDHMLEANLRLVVSVAKKYTDRGMALLDVVQEGNLGLIRAVEKFDYTKGYKFSTYAMW 273 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I+R + RTIRLP+H+++ L+ R R++ +L EP+ EE+A +LDK D Sbjct: 274 WIRQAIQRGFADSARTIRLPVHVLEMLSKLSRVERDMHQRLGREPTPEELAVELDKTPDQ 333 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 + +LR + + S++ +G D E + D++ D + + + + L L+ Sbjct: 334 IEELLRTSRQPISLNATIGEDGETTIGDLIEDVDSPEASEVVDRQLLGEQLRGVLGNLSP 393 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++ +++A RFGL+ + TL+++G+ +GLTRER+RQ++ E L +LR T+ L Sbjct: 394 REAKIMALRFGLVDGKPHTLDEIGKHLGLTRERIRQLEKESLSKLRHPSNTRPL 447 >UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogaceae RepID=A9BJC9_PETMO Length = 424 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 182/316 (57%), Gaps = 20/316 (6%) Query: 19 ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVY 78 E E+F++ + VE E DN + D ++YL EI S LLT E Sbjct: 124 EEYEEIFEDFSDVEVEMCDN-------------ISLQDPIKIYLKEISKSKLLTPSRERK 170 Query: 79 FARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPER 138 ARRA GD +R +I++NLRLV+ IA+RY GL LDLI+EGN+GL++AV KFD ++ Sbjct: 171 LARRAQMGDKRAREELIKANLRLVISIAKRYVGHGLGFLDLIQEGNIGLMKAVAKFDWKK 230 Query: 139 GFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEI 198 G++FSTY+ WWIRQ I RAI +Q RT+R+P+H+V+ +N R + + P EE+ Sbjct: 231 GYKFSTYSYWWIRQAITRAIADQGRTVRIPVHLVETINRMNRVVNKYIQENGEVPDLEEL 290 Query: 199 AEQLDKPVDDVSRMLRLNERITSVDTPLGGD----SEKALLDILADEKENGPEDTTQDDD 254 + +DKPVD + +L + I S++ P+ D E +LD + D P++ + Sbjct: 291 SVLMDKPVDKMKEVLISAKNIFSLNAPISNDVDAEGESEVLDFI-DSDSPTPDEEGRKMI 349 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++Q + + L+ K+ +L R+G + + TLE+VG +TRER+RQI+ + +R+L+ Sbjct: 350 IRQKMEMIIDTLSPKEAMILKMRYGFVDGKQKTLEEVGEFFNVTRERIRQIESKSIRKLK 409 Query: 315 EILQTQGLNIEALFRE 330 + + IE + +E Sbjct: 410 HPARKK--MIENIIQE 423 >UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=D0LP36_HALO1 Length = 697 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 106/255 (41%), Positives = 169/255 (66%), Gaps = 3/255 (1%) Query: 72 TAEEEVYFARRALRGD---VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLI 128 + EE R G+ ++ ++E+NLRLVV IA++Y NRGL LDLI+EGN+GL+ Sbjct: 438 SVEELRQTFREMSDGERMAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLM 497 Query: 129 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHK 188 +AV+KF+ +RG++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N +RT+R L + Sbjct: 498 KAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLVQE 557 Query: 189 LDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPED 248 L EP+ EEIAE+++ P+D V ++L++ + S++TP+G + + L D + D+ P D Sbjct: 558 LGREPTPEEIAERMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVTSPSD 617 Query: 249 TTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVE 308 ++ + K L L ++ +VL RFG+ TLE+VG++ +TRER+RQI+ + Sbjct: 618 AVISVNLAEQTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAK 677 Query: 309 GLRRLREILQTQGLN 323 LR+LR +++ L Sbjct: 678 ALRKLRHPSRSKRLK 692 Score = 42.1 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 20/37 (54%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDV 88 R D ++YL ++G LLT E EV A+R G+ Sbjct: 203 SRTSDPVRMYLRKMGSVSLLTREGEVEIAKRIEEGER 239 >UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteobacteria RepID=Q1QBP8_PSYCK Length = 648 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 102/249 (40%), Positives = 162/249 (65%), Gaps = 3/249 (1%) Query: 77 VYFARRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 ARR G+ +RR M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+K Sbjct: 393 KDVARRMAIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 452 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 F+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R +R+L ++ EP Sbjct: 453 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINRVSRQLLQEMGREP 512 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253 + EE+ E+L+ V ++L++ + S++TP+G D + L D + D + P D Sbjct: 513 TPEELGERLEMDEAKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGTISSPVDDATAA 572 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 ++++ L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L Sbjct: 573 GLREATRDVLGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKL 632 Query: 314 REILQTQGL 322 R +++ L Sbjct: 633 RHPSRSEHL 641 Score = 42.8 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%) Query: 48 QGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRM 94 + R D ++Y+ E+G LLT E E+ A+R G + M Sbjct: 102 ETEPGRTTDPVRMYMREMGTVDLLTREGEIAIAKRIEEGIRDVQHAM 148 >UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasmataceae RepID=B1VAH4_PHYAS Length = 476 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 111/326 (34%), Positives = 183/326 (56%), Gaps = 34/326 (10%) Query: 32 EQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEE------VYFARRALR 85 E +P D+ ++E + + ++ D+ ++YL EIG PLL+ EEE V+ + A + Sbjct: 146 EIDPEDDKFSKENITKINSDIKIDDSVRMYLKEIGRIPLLSKEEEQKKTFAVFLGKEAKK 205 Query: 86 GDVASRRR-------------------------MIESNLRLVVKIARRYGNRGLALLDLI 120 R + ++ESN RLVV IA+RY RG+ LDLI Sbjct: 206 KLTKFRNQEIDLSDQEVKQLESQIIQANQAKDVLVESNYRLVVSIAKRYIGRGVLFLDLI 265 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 +EGN+GL+RAV+KFD ++G R STYAT+W+ Q + RAI +Q RTIR+P+HIV+ +N Sbjct: 266 QEGNMGLMRAVDKFDYQKGLRLSTYATYWVIQGVTRAIADQARTIRIPVHIVETINKMSL 325 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG--DSEKALLDIL 238 R+L+ +L +P+ EE+AE+++ P D + + + ++ S++ P + E +L D + Sbjct: 326 CTRKLTQELKKKPTIEELAEKMNIPADKLRSIQYIEKKPISLEVPPAENKEDETSLGDFI 385 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLF-ELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 +D P + + ++ + + L L ++ +VL R+G L + TLE++G G+ Sbjct: 386 SDPNVLSPHEYMMKEVTQKLLDEVLENTLTEREEKVLKMRYGFLDGKVYTLEEIGNLFGV 445 Query: 298 TRERVRQIQVEGLRRLREILQTQGLN 323 TRER+RQI+ + LRRLR + L Sbjct: 446 TRERIRQIESKALRRLRTPAKQSKLK 471 >UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular organisms RepID=B7K1V2_CYAP8 Length = 379 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 119/354 (33%), Positives = 191/354 (53%), Gaps = 48/354 (13%) Query: 10 DLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSP 69 +L D DE +K D +++ ++ D+ ++YL EIG Sbjct: 30 ELMTDEALDEVMANPEGKKTRKLSASRRRDPNKKKPYTE-------DSIRIYLQEIGRIR 82 Query: 70 LLTAEEEVYFARRA----------------------------------------LRGDVA 89 LL AEEE+ AR+ L Sbjct: 83 LLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINMEWHAFQRRLYLGRK 142 Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ +M+ SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EKFD E+G++FSTYATWW Sbjct: 143 AKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 202 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS ++ +P+ EEIA +++ ++ + Sbjct: 203 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKL 262 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + + + S++TP+G + + L D + + EN PED + +++ + L L+ + Sbjct: 263 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADGEN-PEDEVSKNLLREDLENVLDTLSPR 321 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 +R+VL R+GL TLE++G+ +TRER+RQI+ + LR+LR + L Sbjct: 322 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 375 >UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B9L102_THERP Length = 509 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 114/243 (46%), Positives = 161/243 (66%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 +R R A+RR++ E+NLRLVV IA+RY RGL LLDLI+EGNLGL+RAV+KF +G Sbjct: 262 WQRLRRDGEAARRKLTEANLRLVVSIAKRYTGRGLTLLDLIQEGNLGLMRAVDKFQTHKG 321 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 F+FSTYATWWIRQ I RA+ + RTIRLP+H+V+ LN R AR+L+ +L EP+ E+A Sbjct: 322 FKFSTYATWWIRQAITRALADHARTIRLPVHLVETLNRVSRVARQLTQELGREPTTSELA 381 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 ++ P+D + +L+ + S++ P+G + E L D L DE+ P D +++ + Sbjct: 382 AAVNMPLDRLRELLQAAQDPVSLEAPVGQEEESTLGDFLEDERAVAPLDAAALSLLREQV 441 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 L L ++R VLA RFGL + TLE+VGR G+TRERVRQI+ + LR+LR + Sbjct: 442 QSLLATLTERERRVLAMRFGLEDGQTYTLEEVGRAFGVTRERVRQIEAKALRKLRHPQRA 501 Query: 320 QGL 322 + L Sbjct: 502 RAL 504 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE 74 AE GV V E+AL S + E+E V D +LYL EIG PLLTAE Sbjct: 67 AELQAEGVPVAIEEALEPDGTSRSWEPEKE---ADPDLLVEDPVRLYLAEIGRVPLLTAE 123 Query: 75 EEVYFARRAL 84 +EV R Sbjct: 124 QEVELGRAVE 133 >UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=Q0EWY1_9PROT Length = 660 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 190/314 (60%), Gaps = 10/314 (3%) Query: 13 EDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLT 72 E DE DE ++ + EE QR L + E+G L Sbjct: 338 ETFPVDETNERWIDELMKQNKDAAWVTAIEEVTGKIKENQRRLRRVEQE-TEMGVVEL-- 394 Query: 73 AEEEVYFARRALRGDVA---SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIR 129 AR+ G+ ++R MIE+NLRLV+ IA++Y NRGL LDLI+EGN+GL++ Sbjct: 395 ----KDVARKLTMGEAKMRQAKREMIEANLRLVISIAKKYTNRGLGFLDLIQEGNIGLMK 450 Query: 130 AVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKL 189 AVEKF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N +R +R+++ ++ Sbjct: 451 AVEKFEWRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMMRVSRQIAQEI 510 Query: 190 DHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDT 249 EP+ EE+AE L+ PV+ V ++L + + S++TP+G D + L D + D+ P D+ Sbjct: 511 GREPTPEELAEHLELPVEKVLQILEVAKEPVSLETPIGDDEDSQLGDFVEDDNAENPLDS 570 Query: 250 TQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEG 309 T + ++ ++ L L ++++VL RFG+ TLE+VG++ G+TRER+RQI+ + Sbjct: 571 TIGAALAEATLEVLENLTDREQKVLRMRFGIGMNTDHTLEEVGKQFGVTRERIRQIEAKA 630 Query: 310 LRRLREILQTQGLN 323 LR+LR ++Q L Sbjct: 631 LRKLRHPSRSQKLK 644 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 8/86 (9%) Query: 17 FDENGVEVFDEKA--------LVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS 68 F E GVEV D + ++ ++ + G R+ D ++YL E+G Sbjct: 53 FTEMGVEVVDPERAPTGAYAMRKDRLRKEDSALRADTSQLGTVIRIDDPVRMYLREMGTV 112 Query: 69 PLLTAEEEVYFARRALRGDVASRRRM 94 LLT E E+ ARR G + + Sbjct: 113 ELLTREGEIEIARRIEEGRMQVHEAI 138 >UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0M9H5_9FIRM Length = 347 Score = 317 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 117/325 (36%), Positives = 194/325 (59%), Gaps = 4/325 (1%) Query: 2 SQNTLKVHDLNE--DAEFDENGVE-VFDEKALVEQEPSDNDLAEEELLSQGATQRVLDAT 58 + N +++ ++++ D E + V E SD A ++ + D+ Sbjct: 17 NHNVIQLDEVDQVFDKSLSEQEFDYVIGRLKDQNIEFSDFTAAGHADTAEAENAVMEDSV 76 Query: 59 QLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG-NRGLALL 117 + YL IG PLL+ ++E A+ G +++ +MI SNLRLVV +A+RY G+ALL Sbjct: 77 KAYLHRIGRIPLLSKDQEERLAKEIEAGSQSAKDKMINSNLRLVVSVAKRYAAGSGMALL 136 Query: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177 DLI+EGN+GL++AV+KFD RG++FSTYA WWIRQ++ RAI +Q RTIR+P+H+ +++ Sbjct: 137 DLIQEGNIGLMKAVDKFDYRRGYKFSTYAMWWIRQSVTRAIADQARTIRIPVHMKEKMGK 196 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 AR+ + EP+A+E+AE ++ D + ++RL S+D+P+G + + L++ Sbjct: 197 VSGAARKFLEENGREPNADELAELMEISRDQMDEIMRLYSDTVSLDSPVGEEEDAMLMNF 256 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 +ADE T + + + I + L EL +++ +L RFG + TLE+VGRE + Sbjct: 257 VADESMPEQYQTAEQGILSEQINEILSELTEREQTILRLRFGFVENRIWTLEEVGREYHV 316 Query: 298 TRERVRQIQVEGLRRLREILQTQGL 322 TRER+RQI+ + LR+L+ +T+ L Sbjct: 317 TRERIRQIEGKALRKLKMKKETKSL 341 >UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi (class) RepID=A9AU99_HERA2 Length = 391 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 123/343 (35%), Positives = 186/343 (54%), Gaps = 33/343 (9%) Query: 13 EDAEFDENGVEVFDEKALVEQEPSDNDLAEEELL------SQGATQRVLDATQLYLGEIG 66 E +N E+ D E EP ND E + ++ V D+ Q+YL EIG Sbjct: 44 ETMNVAKNQPELEDAPEGWELEPGFNDEDVELAIVNLRRKKTLYSEAVEDSVQMYLREIG 103 Query: 67 YSPLLTAEEEVYFARRALRGDVAS---------------------------RRRMIESNL 99 LLTAEEE+ A++ G A RR++ ++NL Sbjct: 104 EVELLTAEEEITLAKQIETGRKAEHQLQTEQYATWDERTALERRVDFGNEGRRKLTQANL 163 Query: 100 RLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM 159 RLVV +A++Y ++ +DLI+EGN+GL+RAVEKFD +G RFSTYATWWIRQ + RAI Sbjct: 164 RLVVSVAKKYIGNHMSFMDLIQEGNIGLMRAVEKFDYRKGNRFSTYATWWIRQAVTRAIA 223 Query: 160 NQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERI 219 Q+RTIRLP+H+ + + R A +L L E + +E+A+ L + V RML + + Sbjct: 224 EQSRTIRLPVHLSESIAQMRRVAYQLEQALQREATPDELADALGVSLRKVKRMLNASVQP 283 Query: 220 TSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFG 279 S++ P+G + + + + LAD+ + P + ++ + L +L ++R++L R+G Sbjct: 284 VSLEQPIGKEGQGRVGEFLADDTDEAPLEQATRMMLQDELADALSQLPDRERQILLLRYG 343 Query: 280 LLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 L + TLE+VG E G+TRER RQI+ E +R LR+ Q L Sbjct: 344 LADGKRRTLEEVGAEFGITRERTRQIEAEAMRHLRQPNVGQHL 386 >UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsutsugamushi RepID=B3CQ43_ORITI Length = 615 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 100/278 (35%), Positives = 174/278 (62%), Gaps = 3/278 (1%) Query: 49 GATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA---SRRRMIESNLRLVVKI 105 + ++ +T Y EI + LL + + G+ ++++M+ESN RLVV + Sbjct: 322 SKEKDLIKSTIDYFSEIEQAMLLPLKRFKEIIQAIQNGERKVRVAKKKMVESNTRLVVHV 381 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A+ Y NRGL LDLI+EGN+GL++AV+K++ G++FST ATWW+RQ+I RA+ +Q RTI Sbjct: 382 AKPYVNRGLPFLDLIQEGNIGLMKAVDKYNYLLGYKFSTCATWWVRQSISRAVADQARTI 441 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 R+P+H+ ++ +R ++++ ++L +EP+A EIAE+L P+D V +++R+ + S++ P Sbjct: 442 RIPVHMADTISKIVRVSKQMHNELGYEPTASEIAEKLSMPIDKVKKVMRIAKEPVSLENP 501 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 +G + L D + D+ P + ++++ + L L A++ VL RFG+ Sbjct: 502 IGEEDGSCLSDFIEDKNAILPIEEAIKFSLRETTTRALSTLTAREERVLRLRFGIGLPTD 561 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 TLE+VG E +TRERVRQI+ + LR+L+ ++++ L Sbjct: 562 YTLEEVGGEFKVTRERVRQIEAKALRKLKHPVRSKKLK 599 Score = 49.0 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 3/97 (3%) Query: 10 DLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQ-RVLDATQLYLGEIGYS 68 D+N D +FD + V +K E+ ++ E E D + YL ++ + Sbjct: 46 DINLDKDFDYTKLGVCPDKIEEEEVVLASNATEGEFEEDLDDNIYSTDIVRAYLKDMSNT 105 Query: 69 PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 LL+ E E+ A++ G + +L V+K+ Sbjct: 106 TLLSREGEIELAKQMEEGKKTVIHFI--CHLPYVMKL 140 >UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2K4_9PROT Length = 282 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 128/281 (45%), Positives = 177/281 (62%), Gaps = 1/281 (0%) Query: 49 GATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARR 108 + L+ +Y+ EI LLTA EE+ A+R GD + M+++NLRLVVKI+RR Sbjct: 2 SSNSGGLEPMAIYMREISRYELLTAAEEIALAKRIGAGDKEAHHYMVQANLRLVVKISRR 61 Query: 109 YGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP 168 Y NRG+AL DLIEEGNLGLIRAVEKFD G RFSTYATWWIRQ +ERAIMNQ+RTIR+P Sbjct: 62 YMNRGVALADLIEEGNLGLIRAVEKFDVTHGCRFSTYATWWIRQAVERAIMNQSRTIRVP 121 Query: 169 IHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG 228 +H+ KEL + L +L+ +P+ EIAE + V + ++ R S D L Sbjct: 122 VHVGKELYALTKHTNRLRSELERDPTDVEIAEAMGVSVQRIQELMGAAVRTDSADDMLHD 181 Query: 229 DSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLG-YEAAT 287 DS+ L D+ ADE P D Q + + W+ +L K+REV+ R+GL + T Sbjct: 182 DSDFTLYDVTADEAAESPGDQMQTVLRNEILQVWMSKLEKKEREVVRLRYGLDDAGDPWT 241 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALF 328 LE +G ++G+TRER+RQIQV+ L++LR I+ + ++ E + Sbjct: 242 LEMIGEQLGVTRERIRQIQVQALQKLRRIVSQENIDFEEIL 282 >UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamydiales RepID=RPOD_CHLPN Length = 572 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 184/309 (59%), Gaps = 2/309 (0%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTA- 73 +F E + +D +EQ+ +D + E A +LY E+ L Sbjct: 242 EDFGEVVFKAYDSFLHLEQQINDLKVRAERNKFAAAKLAAA-KRKLYKREVAAGRTLEEF 300 Query: 74 EEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 +++V +R + +++ M+ESNLRLV+ IA++Y NRGL+ LDLI+EGN+GL++AVEK Sbjct: 301 KKDVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEK 360 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 F+ RG++FSTYATWWIRQ + RAI +Q RTIR+P+H+++ +N LR A++L + EP Sbjct: 361 FEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEP 420 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253 + EE+AE+L D V + ++ + S+ +G SE + D L D P + T Sbjct: 421 TPEELAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGYS 480 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 +K + + L L ++R VL RFGLL + TLE+VG +TRER+RQI+ + LR++ Sbjct: 481 MLKDKMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKM 540 Query: 314 REILQTQGL 322 R ++++ L Sbjct: 541 RHPIRSKQL 549 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 10/109 (9%) Query: 20 NGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYF 79 ++V ++ + Q+ + E E L++ D ++YL E+G PLLT EEEV Sbjct: 65 MDIQVLNQIDVERQKEKKKEAKELEGLARRTEGTPDDPVRMYLKEMGTVPLLTREEEVEI 124 Query: 80 ARRALRGDVASRRRMIESNLRL------VVKIARRYGNRGLALLDLIEE 122 ++R + V R+I LR + IA + +I E Sbjct: 125 SKRIEKAQVQ-IERII---LRFRYSAKEAISIAHYLISGKERFDKIISE 169 >UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyanobacteria RepID=RPOD4_SYNE7 Length = 311 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 125/308 (40%), Positives = 176/308 (57%), Gaps = 23/308 (7%) Query: 42 EEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRAL----------------- 84 E L+ + D YL IG PLLTAEEEV +R+ Sbjct: 5 ERRNLNAAVERHTSDHVSWYLSSIGRIPLLTAEEEVELSRKVQLMMALLENPDAESNSEN 64 Query: 85 ----RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 + ++ +M+++NLRLVV +A++Y N+GL LLDLI+EG+LGL RAVEKFDP G+ Sbjct: 65 QAVLQAGQRAKTKMLKANLRLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGY 124 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYA WWIRQ++ RAI N RTIRLPIH+ ++++ + REL+H+L PS EIAE Sbjct: 125 KFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSEKISRIKKMTRELTHQLKRLPSRAEIAE 184 Query: 201 QLDKPVDDVSRMLRLNERITSVDT-PLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 L P+ DV +L + TS+D G D L D++ D K P D + I Sbjct: 185 ALKLPLQDVEMLLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQHEQI 244 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 WL L ++++VL RFGL E TL ++GR + ++RER+RQ++ L++LR +L Sbjct: 245 STWLAHLTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQKLR-VLSQ 303 Query: 320 QGLNIEAL 327 Q L EA Sbjct: 304 QPLCPEAC 311 >UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NY91_9DELT Length = 540 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 96/242 (39%), Positives = 158/242 (65%) Query: 82 RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 R ++ R++++NLRLVV +A++Y RGL LLDLI+EGN+GL++AVEKF+ RG++ Sbjct: 294 RGQEVSQEAKNRLVQANLRLVVSVAKKYAGRGLQLLDLIQEGNIGLMKAVEKFEYRRGYK 353 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 FSTYATWWIRQ + RAI +Q RTIR+P+H++ +N L+ A+E + EP+ +E+A+ Sbjct: 354 FSTYATWWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEFQRQHGREPTPDEMAQH 413 Query: 202 LDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 L V V +L++ + S+DTP+G ++ L D + D + P++ T ++++ ++ + Sbjct: 414 LGVEVAKVKSVLKIAKEPLSLDTPVGNSNDSFLADFIEDTEAASPDEATIYENLQSNLRR 473 Query: 262 WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 L L+ ++ VL RFGL TLE+VG +TRER+RQI+ + L++L+ + Sbjct: 474 VLKTLSPREEMVLRLRFGLDTAMDLTLEEVGENFAVTRERIRQIEAKALKKLKHPARRNQ 533 Query: 322 LN 323 L+ Sbjct: 534 LS 535 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 37/80 (46%) Query: 18 DENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEV 77 DE+G E A E E + + +D ++YL E+G PLL+ EEE+ Sbjct: 60 DEDGDEHAPAAAQDEASDGAGADDEPYVWPGDSGGDQVDPVKVYLQEMGSVPLLSTEEEI 119 Query: 78 YFARRALRGDVASRRRMIES 97 AR G++ ++ ++ + Sbjct: 120 AVAREIEAGELLIQQALLTA 139 >UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB24_THET1 Length = 463 Score = 313 bits (802), Expect = 6e-84, Method: Composition-based stats. Identities = 103/234 (44%), Positives = 158/234 (67%) Query: 82 RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 + + ++ ++IE+N RLVV IA++Y RGL+LLDLI+EGN+GL+RA +KFD RG++ Sbjct: 217 KVRKEGEGAKCKLIEANTRLVVSIAKKYLGRGLSLLDLIQEGNIGLMRAADKFDYTRGYK 276 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 FSTYATWWIRQ + RAI +Q+RTIRLP+H+ + ++ +T+++L +L HEP+ E+++ + Sbjct: 277 FSTYATWWIRQAVTRAIADQSRTIRLPVHVCETVSKIHKTSQKLQQELGHEPTIEQLSSE 336 Query: 202 LDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 L P+ V ++ + ++ S++ P+G D + L D L D P +D +++ I Sbjct: 337 LGMPMKKVVQIQQASKFPVSLEAPIGEDGDSMLGDFLEDVHVLNPVQKAANDILREQINS 396 Query: 262 WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 L L K+R+VL RFGL+ + TLE+VG E +TRERVRQI+ LRRLRE Sbjct: 397 VLQNLPPKERKVLELRFGLVDGKCRTLEEVGNEFAITRERVRQIECTALRRLRE 450 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 24 VFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRA 83 F + A + + +DL++ E + +G + + Q+YL EIG PLLTAE+EV AR+ Sbjct: 39 EFSDDATNDVDQEGSDLSDLEHI-EGYADDLDEPVQMYLREIGKVPLLTAEQEVILARKI 97 Query: 84 L 84 Sbjct: 98 E 98 >UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi (class) RepID=A5UQ16_ROSS1 Length = 541 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 108/240 (45%), Positives = 159/240 (66%) Query: 83 ALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 142 A+ +R + ++NLRLVV +A++Y RGL LLDLI+EGN+GLIRAVEKFD +GF+F Sbjct: 297 AIDQGKTAREDLTQANLRLVVSVAKKYIGRGLQLLDLIQEGNVGLIRAVEKFDYRKGFKF 356 Query: 143 STYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL 202 STYATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R +R + +L EP+ EE++ L Sbjct: 357 STYATWWIRQAITRAIADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEELSRAL 416 Query: 203 DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKW 262 PVD V + + + S++TP+G + + L D + D K P D +++ + + Sbjct: 417 GIPVDKVRSIRKTSLEPVSLETPVGQEEDSQLGDFIEDSKVLAPSDAASHQMLREQVEQV 476 Query: 263 LFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 L +L ++R VL RFGL + TLE+VG+E G+TRER+RQI+V+ LR+LR + L Sbjct: 477 LNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRLGKKL 536 Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRR 93 V D ++YL EIG PLL A +E+ A++ G+ R Sbjct: 116 VNDTVRMYLREIGRVPLLNARQEILLAQKIEIGEYLESYR 155 >UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E8_9CHLO Length = 595 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 104/332 (31%), Positives = 173/332 (52%), Gaps = 44/332 (13%) Query: 32 EQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRAL------- 84 E +++ T++ D+ + YL +IG LLT EEV A+R Sbjct: 246 EASAAESRRNRRIARKNADTKKQTDSMKTYLKDIGTVSLLTGAEEVELAKRIQDLMYLNS 305 Query: 85 ----------------------------------RGDVASRRRMIESNLRLVVKIARRYG 110 ++ MI++NLRLVV IA+RY Sbjct: 306 VCERLEEENGGKEPTRFMWAIECNITEQELERRLEEGKRAKNAMIQANLRLVVSIAKRYA 365 Query: 111 NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH 170 N+ ++ DLI+EG +GLIR EKFD +RG++FSTYA WWIRQ + R+I +Q+RTIRLP+H Sbjct: 366 NKSMSFQDLIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVH 425 Query: 171 IVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL---G 227 + + ++ + R++ KL +P+ EE+A+ ++ V+ + ++ + + S+ + Sbjct: 426 LFEIISRMSKVERQMVLKLGRDPTHEELADAMEMTVEKIKQIKKASLVPISLSQTVNNSN 485 Query: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 G+ ++ + D L D+ PE T +K+ + L LN ++R+VL R+GL T Sbjct: 486 GEDKRTVEDTLIDDYTEHPEGETGKVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKT 545 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 LE++G +TRER+RQI+ + LR+LR+ + Sbjct: 546 LEEIGNVFSVTRERIRQIEAKALRKLRQPSRN 577 >UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrelia RepID=RPOD_BORBU Length = 631 Score = 312 bits (801), Expect = 9e-84, Method: Composition-based stats. Identities = 112/313 (35%), Positives = 185/313 (59%), Gaps = 10/313 (3%) Query: 11 LNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPL 70 L D E +E+ L E D +E++ Q+ L+ ++Y E + Sbjct: 322 LGRDLTIAEKKIEIEKSLKLKE------DAIKEQITEAQLAQKELERIEMYY-EYPTDKI 374 Query: 71 LTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRA 130 ++ EE+ ++ ++ ++ ++I++NLRLVV IA++Y NRGL DL++EGN+GLI+A Sbjct: 375 ISMSEEIAKGKQMMQ---HAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKA 431 Query: 131 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLD 190 VEKF+ +RGF+FSTYATWWIRQ I R+I +Q RTIR+P+H+++++N R R L L Sbjct: 432 VEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYLIQVLG 491 Query: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT 250 +P+ EE++++L + V + ++ S++TP+G + + L D + D+ P + T Sbjct: 492 KDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGEEEDSVLSDFIEDKAIKNPANHT 551 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310 ++ I L L +++EV+ RFGL + TLE+VG +TRER+RQI+ + L Sbjct: 552 SFVVLQDQIRAILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKAL 611 Query: 311 RRLREILQTQGLN 323 RRL+ +TQ L Sbjct: 612 RRLKNPKKTQKLK 624 Score = 43.6 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 7/99 (7%) Query: 14 DAEFDENGVEVFDEKALVEQEPSDNDLAEEELL-SQGATQRVLDATQLYLGEIGYSPLLT 72 ++ ++ ++V + E +DL + + D +LYL EIG LLT Sbjct: 96 QSDEEDIDIDVKLDDCDEEDISVKDDLGSGYIKGNVLKDSHSEDPIKLYLKEIGKEFLLT 155 Query: 73 AEEEVYFARRALRGDVASRRRM------IESNLRLVVKI 105 +EV A++ G+ + IE+ LV I Sbjct: 156 GNQEVELAKQMDSGESIIENILKNEGLVIENYYNLVNTI 194 >UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacteria RepID=RPOD_MYXXA Length = 708 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 116/330 (35%), Positives = 194/330 (58%), Gaps = 19/330 (5%) Query: 7 KVHDLNEDAE--FDENGVEVFDEKALVEQEPSDNDLAEEEL-LSQGATQRVLDATQLYLG 63 K D D E +D + E+ + + P+ +++L L+ + + + + Sbjct: 378 KAEDELRDLERRYDCSMKELRPQLKESRENPNIGKKLQKQLNLTPEQLEVLDRDVRTAVR 437 Query: 64 EIGYSPLLTAEEEVYF-----------ARRALRGDVASRRRMIESNLRLVVKIARRYGNR 112 +I EEE R R ++ ++E+NLRLVV IA++Y NR Sbjct: 438 KIKKV-----EEEANLPVESLRRNYDAIRLGERRAERAKSELVEANLRLVVSIAKKYTNR 492 Query: 113 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172 GL LDLI+EGN+GL++AV+KF+ +RG++FSTYATWWIRQ I RAI +Q RTIR+P+H++ Sbjct: 493 GLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMI 552 Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232 + +N +RT+R L ++ EP+ EEIAE+++ P+D V ++L++ + S++TP+G + + Sbjct: 553 ETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDS 612 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 L D + D+ P D + ++ + K L L ++ +VL RFG+ TLE+VG Sbjct: 613 HLGDFIEDKSLVSPADAVINMNLAEQTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVG 672 Query: 293 REIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++ +TRER+RQI+ + LR+LR +++ L Sbjct: 673 QDFEVTRERIRQIEAKALRKLRHPSRSKRL 702 Score = 42.1 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 14 DAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTA 73 DA+ E+ + E++ ++ ++E G + D +LYL ++G LLT Sbjct: 157 DAQKAAQNNEIKPTVTVEEEKEDADEDEKDEDDEPG--GKSNDPVRLYLRKMGSVSLLTR 214 Query: 74 EEEVYFARRALRGDVASRRRM 94 E EV A+R G+ R + Sbjct: 215 EGEVEIAKRIEDGEKEVLRAL 235 >UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma RepID=B1AIY8_UREP2 Length = 448 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 111/294 (37%), Positives = 176/294 (59%), Gaps = 18/294 (6%) Query: 47 SQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA----SRRRMIESNLRLV 102 S T++V D + YLG +G S +L ++EE +A+ + D + + ++ SN+RLV Sbjct: 146 SSTTTEKVDDGIKAYLGVLGESKMLRSDEETEYAKMVISDDPSLVKIGKNQLYTSNMRLV 205 Query: 103 VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQT 162 IA++Y NRGL L DLI+EG+ GL++A++KFD E+G +FSTYATWWIRQ+I RAI +Q Sbjct: 206 TSIAKKYLNRGLDLEDLIQEGSSGLLKAIDKFDHEKGHKFSTYATWWIRQSITRAIADQA 265 Query: 163 RTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD------------KPVDDVS 210 R IR+P+H+V+ +N + R L +L +P+AEEIA+ ++ V Sbjct: 266 RQIRIPVHMVETINKLTKAERNLIQELGRDPTAEEIAQAMNKVSQAKNQKEQLITAQKVV 325 Query: 211 RMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE-LNAK 269 + +LN S+D +G D E D ++D++ PE T+ + I + + LN Sbjct: 326 EIKKLNVDPVSLDKQIGHDEESQFSDFISDDEIISPEKYTEKKALNDQINEMFEKVLNDN 385 Query: 270 QREVLARRFGLLGYE-AATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++ V+ R+GLL +E TLE+VG +G+TRER RQI+ + +R+L+ +T L Sbjct: 386 EQRVIKMRYGLLPFERPYTLEEVGEYLGVTRERARQIESKAIRKLKHPSKTAKL 439 >UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R064_9DELT Length = 555 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 99/256 (38%), Positives = 159/256 (62%), Gaps = 3/256 (1%) Query: 71 LTAEEEVYFARRALRGDV---ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGL 127 L +E + G+ ++ R+++SNLRLVV +A++Y RGL LLDL++EGN+GL Sbjct: 294 LDRQELSALLAQISLGEEISREAKNRLVQSNLRLVVSVAKKYAGRGLQLLDLVQEGNIGL 353 Query: 128 IRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSH 187 ++AVEKF+ RG++FSTYATWWIRQ + RAI +Q RTIR+P+H++ +N L+ A+E Sbjct: 354 MKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEYQR 413 Query: 188 KLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPE 247 + EP+ EE+AE L + V +L++ + S+DTP+G + L D + D P+ Sbjct: 414 QHGREPTPEEMAEHLGVDIAKVKSILKIAKEPLSLDTPVGSGEDSFLSDFIEDADSTSPD 473 Query: 248 DTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307 + T D ++ ++ + L L ++ VL RFG+ TLE+VG +TRER+RQI+ Sbjct: 474 EATIYDSLQDNLARVLKTLTPREEMVLRLRFGIDTATDLTLEEVGENFSVTRERIRQIEA 533 Query: 308 EGLRRLREILQTQGLN 323 + L++L+ + L+ Sbjct: 534 KALKKLKHPTRKSILS 549 Score = 50.5 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIES--NLRLVVKIAR 107 + +D ++YL E+G LL++EEEV A+ RG+ + ++ + L + +IA+ Sbjct: 102 SATDQVDPVKVYLQEMGAVALLSSEEEVAVAKEIERGERTIQDALVIAPPALAYLDEIAK 161 Query: 108 RYGNRGLALLDLI 120 + + L D++ Sbjct: 162 KIQHGNRMLSDIV 174 >UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellular organisms RepID=RPOD1_SYNE7 Length = 399 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 114/337 (33%), Positives = 187/337 (55%), Gaps = 41/337 (12%) Query: 27 EKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRA--- 83 + E +++ A + ++ D+ +LYL EIG LL A+EE+ AR+ Sbjct: 60 DAIDDEDSVGEDEDAAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADL 119 Query: 84 -------------------------------------LRGDVASRRRMIESNLRLVVKIA 106 L ++ +M++SNLRLVV IA Sbjct: 120 LALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIA 179 Query: 107 RRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIR 166 ++Y NRGL+ DLI+EG+LGLIRA EKFD E+G++FSTYATWWIRQ I RAI +Q+RTIR Sbjct: 180 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 239 Query: 167 LPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL 226 LP+H+ + ++ +T + LS ++ +P+ EEIA +++ ++ + + + + S++TP+ Sbjct: 240 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 299 Query: 227 GGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAA 286 G + + L D + + E PED + +++ + L L+ ++R+VL R+GL Sbjct: 300 GKEEDSRLGDFIEADGE-TPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMK 358 Query: 287 TLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 TLE++G+ +TRER+RQI+ + LR+LR + L Sbjct: 359 TLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILK 395 >UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter michiganensis RepID=B0RI86_CLAMS Length = 347 Score = 310 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 122/309 (39%), Positives = 176/309 (56%), Gaps = 33/309 (10%) Query: 36 SDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG--------- 86 +D+DL E L++ GA+ DA + YL +IG PLLTAE EV ARR G Sbjct: 32 ADSDLPEPSLVTPGAST---DAVKDYLRQIGRVPLLTAELEVSVARRIEVGVLSQEVLDT 88 Query: 87 ------------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLI 128 + +++ ++ +NLRLVV IA+RY RGL LDLI+EGN+GL+ Sbjct: 89 RTDLTPAERREYQTLAQDGMRAKQHLVNANLRLVVSIAKRYTGRGLPFLDLIQEGNMGLV 148 Query: 129 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHK 188 RAVEKFD + GF+FSTYA+WWI+Q+I R + + +RTIR+P+H V+ +N REL + Sbjct: 149 RAVEKFDYQAGFKFSTYASWWIKQSITRGMADTSRTIRIPVHTVEHINRINAVQRELGDE 208 Query: 189 LDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL---GGDSEKALLDILADEKENG 245 L +PS EEIA + D PV V +L + S+ + GGD + + D++ D Sbjct: 209 LGRDPSMEEIARESDTPVTKVRYLLDRAQEPMSLQVLVGGSGGDGDTEMADLIEDADVTQ 268 Query: 246 PEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQI 305 P D M + + + L + EV+ RFGL G E +L V +++G+TRERVRQI Sbjct: 269 PIDVVTQQLMAAHVTRLIDGLAERDAEVVRMRFGLAGLEPRSLAFVSQQLGVTRERVRQI 328 Query: 306 QVEGLRRLR 314 + + L +LR Sbjct: 329 EKKVLAKLR 337 >UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacteria RepID=C6X620_FLAB3 Length = 294 Score = 309 bits (793), Expect = 7e-83, Method: Composition-based stats. Identities = 100/278 (35%), Positives = 167/278 (60%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 +++ T R + YL EIG L+TA+EEV A++ GD + ++I++NLR VV + Sbjct: 12 ITKQVTNRETASLDKYLQEIGKVDLITADEEVDLAQKIRAGDRVALEKLIKANLRFVVSV 71 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 +++Y N+GL+L DLI EGNLGL++A +++D RGF+F +YA WWIRQ+I +A+ Q+R + Sbjct: 72 SKQYQNQGLSLPDLINEGNLGLMKAAKRYDETRGFKFISYAVWWIRQSILQALAEQSRIV 131 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 RLP++ + +N + L + + PS EE+AE LD DD+ ++ + R S+D P Sbjct: 132 RLPLNKIGSINKINKAYAHLEQENERPPSPEELAEVLDMSEDDIKESMKNSGRHLSMDAP 191 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 L + L D+L + P+ + ++ I + L L ++ +++ FGL G Sbjct: 192 LVEGEDSNLYDVLRSGESPSPDKELMLESLQIEIERALQTLTPREADLVRLYFGLNGKHP 251 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 TLE++G LTRERVRQI+ + ++RL+ +++ L Sbjct: 252 MTLEEIGETFDLTRERVRQIKEKAIKRLKHNTRSKILK 289 >UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema RepID=Q73P62_TREDE Length = 286 Score = 309 bits (792), Expect = 9e-83, Method: Composition-based stats. Identities = 98/280 (35%), Positives = 164/280 (58%), Gaps = 1/280 (0%) Query: 47 SQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIA 106 ++ +++ YL EI PLLTAEEE+ +A+ A +GD ++ ++ SNLR VV +A Sbjct: 5 TKNNYDAEMNSLATYLKEINQIPLLTAEEEIKYAKLAEKGDEDAKNMLVNSNLRFVVNVA 64 Query: 107 RRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIR 166 ++Y N+GL L+DLI EGN+GL+ A E+FD +G++F +YA WWI+Q+I +AI ++R IR Sbjct: 65 KKYQNQGLPLMDLISEGNIGLMNAAERFDVSKGYKFISYAVWWIKQSILKAICEKSRMIR 124 Query: 167 LPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL 226 LP++ EL + +E+ + EIA L+ V ++ S+D P+ Sbjct: 125 LPLNRANELVQIEKAKKEIDFSGNETKELNEIAGILNMDNSMVHTIMNAAREPISIDAPV 184 Query: 227 GGD-SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 + ++ D L DE PED D ++ + + L L+ ++ E++ RFGL GY Sbjct: 185 FDEPGSSSVNDFLQDETHQMPEDYAMDMSLRDEVNELLKNLDDREAEIIRYRFGLGGYAP 244 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 +L++VG LT+ER+RQI+ + L++L++ + Q L + Sbjct: 245 LSLKEVGLIFNLTKERIRQIEKKALQQLKKPAEKQKLAVY 284 >UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacterium RepID=Q1Z2N9_PHOPR Length = 291 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 141/276 (51%), Positives = 193/276 (69%), Gaps = 1/276 (0%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D QLYL EI PLLT EE+ ++R++L GD +++ MIESNLRLVV IA++Y G+ Sbjct: 14 DVIQLYLREIALKPLLTKHEEILYSRKSLTGDKEAKKVMIESNLRLVVSIAKKYRGSGMQ 73 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 L DLI+EGN+GLI +VEKFDPERGFRFSTYATWWI+QTIER I NQ RTIRLP+H+ KE+ Sbjct: 74 LSDLIDEGNIGLITSVEKFDPERGFRFSTYATWWIKQTIERCIHNQARTIRLPVHVSKEI 133 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK-AL 234 N +RT ++L K + EP+ EE+AE+L++ VDD+S +L + I S D + D+ ++ Sbjct: 134 NTIIRTHKQLMKKNNQEPTREEVAEKLERSVDDISSVLAYDAPIVSFDQTINDDANSQSI 193 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 +AD+ + PE DD+K + L LN + RE+L RRFGLLGYE TL+ V E Sbjct: 194 SVFIADDSSDKPESQVDKDDIKGLALAMLENLNQRDREILCRRFGLLGYEVQTLQQVANE 253 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 +GLTRER+RQ+QV L++L+ L+ ++E LF + Sbjct: 254 VGLTRERIRQLQVSSLKKLKNTLERDNYDLELLFAQ 289 >UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium caldarium RepID=Q39515_CYACA Length = 591 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 125/363 (34%), Positives = 194/363 (53%), Gaps = 48/363 (13%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLG 63 +T+ V ++ ++E +E ++ ++ L++ + D A+ +L + A D + YL Sbjct: 228 STVPVEEVYSNSETEEAESQIESDE-LLDFIVEEVDPADVDLSTVEAKD---DTIRSYLR 283 Query: 64 EIGYSPLLTAEEEVYFARRA---------------------------------------- 83 EIG LL EE+ +++ Sbjct: 284 EIGRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCGYGDDVEKLR 343 Query: 84 --LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 +R ++ RM+ +NLRLVV IA+RY NRG+AL DLI+EG++GLIR VEKFD ERGFR Sbjct: 344 EHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAERGFR 403 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 FSTYATWWIRQ+I RAI + +R+IRLP+H+ +++ + + L +L PS EEI E Sbjct: 404 FSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEEEICES 463 Query: 202 LDKPVDDVSRMLRLNERITSVDTPL-GGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 + ++ + I S++TPL GD L + L +E E+ D +++SI Sbjct: 464 VGIDRAKYRLVMECSRNIVSLETPLRSGDDVHFLGESLIAPEERA-EENCSRDTLRESIE 522 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 K L L+ ++REV+ RFGL TLE+VG +TRER+RQI+ + L++LR + Sbjct: 523 KVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKALKKLRTPAENN 582 Query: 321 GLN 323 L+ Sbjct: 583 FLD 585 >UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia RepID=Q5GSP3_WOLTR Length = 649 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 94/243 (38%), Positives = 160/243 (65%), Gaps = 1/243 (0%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 ++ R +++ MI++NLRLVV IA++Y NRGLALLDLI+EGN+GL++AV+KFD +RG+ Sbjct: 403 QKHEREVSEAKQGMIKANLRLVVSIAKKYSNRGLALLDLIQEGNIGLMKAVDKFDYKRGY 462 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTY TWW+RQ+I RAI Q++ +R+P+H+V+ ++ R R+L+H++ EP+ EE++ Sbjct: 463 KFSTYGTWWVRQSITRAIPEQSKVVRIPVHMVEIISKINRALRKLTHEMGREPTLEELSM 522 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 +L P++ + +++++ S+D P G D D + D++ + PED D++ Sbjct: 523 ELGMPLERIRKVMKIARDPVSLDAPTGKDDSSTFGDCIEDKRVSKPEDAAILTDLRCITT 582 Query: 261 KWLFELNAKQREVLARRFGLL-GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 L L K+ ++ RFGL + TLE++G +TRER+RQ++ + LR+L+ + Sbjct: 583 NLLATLTPKEERIIRMRFGLGKDCKEHTLEEIGCIFKVTRERIRQVESKALRKLKHPCRA 642 Query: 320 QGL 322 + L Sbjct: 643 RKL 645 Score = 41.7 bits (97), Expect = 0.036, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 35/86 (40%) Query: 11 LNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPL 70 L +D+ + +E+A + S D + + + D ++YL ++ L Sbjct: 53 LLQDSGINILESSEDEEEAPSNSDDSKLDDDDALSNTTTTLVQNDDPVRVYLQDMSSVKL 112 Query: 71 LTAEEEVYFARRALRGDVASRRRMIE 96 L+ +E+ A++ R +IE Sbjct: 113 LSRTDEIEIAKKIESEKHNMLRAIIE 138 >UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacterium prausnitzii RepID=C7H329_9FIRM Length = 461 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 106/246 (43%), Positives = 157/246 (63%), Gaps = 1/246 (0%) Query: 71 LTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRA 130 LT E + R + +RR + E+NLRLVV IA+++ LA LDLI+EGN+GLI+A Sbjct: 206 LTEERRQELL-KIRRDGLNARRSLSEANLRLVVSIAKKHVGHNLAFLDLIQEGNIGLIKA 264 Query: 131 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLD 190 EKFD +RGFRFSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N + +L ++ Sbjct: 265 AEKFDCDRGFRFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMRQATNQLVYQNG 324 Query: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT 250 HEP+ EE+A+ +D V+ V + R+ + S+++P+G + + +L D +ADE P Sbjct: 325 HEPTPEELAKAMDMSVERVREIQRMAQEPASLESPVGEEEDSSLGDFVADENAEAPGKAA 384 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310 + Q I + L L ++ +V+ RFGL TLE+VGR+ G+TRERVRQI+ + + Sbjct: 385 DRAMVAQQINQALKSLTPREEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAI 444 Query: 311 RRLREI 316 R+L Sbjct: 445 RKLHSR 450 Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%) Query: 14 DAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTA 73 +A DE G+ +E E+ P+D A +ELL D + YL +IG PLL+A Sbjct: 70 EANSDELGLGDENEDDPAEENPADLKAAMDELL--------DDPVKNYLKQIGQIPLLSA 121 Query: 74 EEEVYFARRALRGDVASR 91 E+EV ++R G A+ Sbjct: 122 EQEVDLSKRIHAGAEAAH 139 >UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria RepID=A9F3S6_SORC5 Length = 639 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 102/244 (41%), Positives = 165/244 (67%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 R R ++ ++E+NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+KF+ +RG Sbjct: 391 IREGERMAERAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRG 450 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 ++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N +RT+R L + EP+ EEIA Sbjct: 451 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEYGREPTPEEIA 510 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 E+++ P+D V ++L++ + S++TP+G + + L D + D+ P + + ++ + Sbjct: 511 EKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVISPAEAVINMNLAEQT 570 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 K L L ++ +VL RFG+ TLE+VG++ +TRER+RQI+ + LR+LR ++ Sbjct: 571 RKVLKTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRS 630 Query: 320 QGLN 323 + L Sbjct: 631 KQLK 634 Score = 40.9 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%) Query: 12 NEDAEFDENGVEV-FDEKALVEQEPSDNDL---AEEELLSQGATQRVLDATQLYLGEIGY 67 +ED E + +V K + ++E + L + E + D ++YL ++G Sbjct: 102 DEDIEIVDGATQVKIAPKRIADEEAGEKKLVVTPDREEEDVDYYSKSNDPVRMYLRKMGS 161 Query: 68 SPLLTAEEEVYFARRALRGDVA 89 LLT E EV A+R G+ Sbjct: 162 VSLLTREGEVEIAKRIEIGEQK 183 >UniRef50_B5ES65 RNA polymerase sigma factor n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ES65_ACIF5 Length = 316 Score = 306 bits (785), Expect = 6e-82, Method: Composition-based stats. Identities = 139/316 (43%), Positives = 200/316 (63%), Gaps = 7/316 (2%) Query: 11 LNEDAEFD-----ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEI 65 L EDA+ D E EV ++A + E + D + GA+ DA +LYL EI Sbjct: 2 LTEDADGDVPDALEEIAEVGQDEACLWPETPEFDAIADPAWEAGASDH-FDAIKLYLQEI 60 Query: 66 GYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG-LALLDLIEEGN 124 G++PLLTAEEEV A +GD+ +R R++E NLRLVV+IARRY + L LLDLIEEGN Sbjct: 61 GHNPLLTAEEEVSLGLSAQQGDITARNRLVECNLRLVVRIARRYQRQHTLPLLDLIEEGN 120 Query: 125 LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARE 184 LGLIRA E FDP RGFRFSTYATWWIRQ I+R IM Q+R +RLP HI+K L+ LR++R+ Sbjct: 121 LGLIRAAELFDPTRGFRFSTYATWWIRQNIDRGIMQQSRVVRLPTHIIKNLSAVLRSSRQ 180 Query: 185 LSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKEN 244 ++ + +P E++A+ + K V V L+ + R+ S+D P + +L L D + Sbjct: 181 IAQTMQGDPRVEDVAQVMGKSVAYVEDCLQQDRRVVSLDAPSRWEGSPSLAQTLVDADQA 240 Query: 245 GPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQ 304 + ++ D+++ I + L L+ + R +L RRFG+ G + A+L +G+E+G++ ERVRQ Sbjct: 241 DLGASLEEQDLQRQIHRALLGLDVRHRTILIRRFGIDGQDGASLSAIGKELGVSHERVRQ 300 Query: 305 IQVEGLRRLREILQTQ 320 +Q E L LR+ + Q Sbjct: 301 LQEEALDLLRQHTELQ 316 >UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacteria RepID=RPOD_TREPA Length = 611 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 108/247 (43%), Positives = 161/247 (65%), Gaps = 3/247 (1%) Query: 80 ARRALRGDV---ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 AR RG V ++ ++I +NLRLVV IA++Y NRGL DL++EGN+GLI+AVEKF+ Sbjct: 360 ARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEY 419 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 +G++FSTYATWWIRQ I R+I +Q RTIR+P+H+++++N R +R+L K EPS E Sbjct: 420 RKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDE 479 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 EIA+QL V+ V ++ + S++TP+G + + +L D + D P T+ +K Sbjct: 480 EIAQQLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLK 539 Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 + + L L A++ EVL RFGL G + TLE+VG +TRER+RQI+ + L+RLR Sbjct: 540 EEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHP 599 Query: 317 LQTQGLN 323 ++ L Sbjct: 600 RHSRRLK 606 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 41 AEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR 100 A + LLS + D +LYL +IG LLTAE+EV ++R G+ + + +S L Sbjct: 103 ARQNLLSNARNIALDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLL 162 Query: 101 L--VVKIARRYGNRGLALLD 118 L I R + LA+LD Sbjct: 163 LPEFYHIGRSLSKKALAVLD 182 >UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia RepID=C0R506_WOLWR Length = 650 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 94/253 (37%), Positives = 162/253 (64%), Gaps = 4/253 (1%) Query: 74 EEEVYFARRALRGDVA---SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRA 130 +E +R + + +++ MI++NLRLVV IA++Y RGL LLDLI+EGN+GL++A Sbjct: 394 QEFKELIKRIQKHEREVSEAKQEMIKANLRLVVSIAKKYSKRGLDLLDLIQEGNIGLMKA 453 Query: 131 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLD 190 V+KFD +RG++FSTY TWW+RQ+I RAI Q++ +R+P+H+V+ ++ R R+++H++ Sbjct: 454 VDKFDYKRGYKFSTYGTWWVRQSITRAIPEQSKVVRIPVHMVEIISKINRALRKMTHEMG 513 Query: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT 250 EP+ EE++ +L P++ + +++++ S++ P G D D + D++ + PED Sbjct: 514 REPTLEELSVELTMPLERIRKVMKIARDPVSLEAPTGKDDSSTFGDCIEDKRVSRPEDAA 573 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLL-GYEAATLEDVGREIGLTRERVRQIQVEG 309 D++ L L K+ +L RFGL + TLE+VG+ +TRER+RQI+ + Sbjct: 574 ILADLRGITTNVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKA 633 Query: 310 LRRLREILQTQGL 322 LR+L+ + + L Sbjct: 634 LRKLKHPSRARKL 646 >UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDN0_THET1 Length = 344 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 134/342 (39%), Positives = 187/342 (54%), Gaps = 30/342 (8%) Query: 8 VHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVL-DATQLYLGEIG 66 + +L +D + +N E+ + E E + DL+ LL + + ++ D+ +YL EIG Sbjct: 1 MEELGKDFDILDNLDEIILDS---ELEDLEADLSPASLLEEEMDRELIGDSLGIYLREIG 57 Query: 67 YSPLLTAEEEVYFARRALRG--------------------------DVASRRRMIESNLR 100 + LLTAEEEV A+ RG A+R ++IE NLR Sbjct: 58 RAQLLTAEEEVALAQAIERGQEAEQRLQSDDISPEELDDLKKAVEEGKAARHKLIEHNLR 117 Query: 101 LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 LVV IARRY G+ L DLIEEGNLGL+RA EKFD RGFRFSTYATWWIRQ + R + Sbjct: 118 LVVSIARRYVGHGMPLADLIEEGNLGLMRAAEKFDWRRGFRFSTYATWWIRQAVTRGLAE 177 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERIT 220 RTIRLP+H+ + L R + LS +L EP+ +E+AE + + + Sbjct: 178 GGRTIRLPVHVGEALTKIGRETQRLSLELGREPTNQELAEATGLSPERIDEYKNASRLPL 237 Query: 221 SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL 280 S++ PLG D E L ++L D + PE + + I + L LN +QR ++ R+GL Sbjct: 238 SLEAPLGEDGETNLGEVLEDTEAANPEHIADHTMLGEDIKRALERLNERQRAIIIMRYGL 297 Query: 281 LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 G + TLE GR++G+TRER RQI+ E L RLR+ Q L Sbjct: 298 YGGQPMTLEAAGRKLGVTRERARQIEQEALNRLRQSDAKQFL 339 >UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AV06_RUBXD Length = 304 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 115/260 (44%), Positives = 169/260 (65%), Gaps = 1/260 (0%) Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 YL IG LLT + E+ +RRA +GD +R+++IE NLRLVV +A++Y GL DLI Sbjct: 38 YLDRIGRWRLLTRDGEIELSRRAKKGDRKARQKLIEKNLRLVVSVAKKYRGYGLPFEDLI 97 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 +EGN+GL++AVEKFDPERGFRFSTYATWWIRQ ++RA+ ++ RTIR+P+H+ +++ R Sbjct: 98 QEGNIGLMKAVEKFDPERGFRFSTYATWWIRQAVQRAVADKGRTIRVPVHMTEKIRKVSR 157 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSE-KALLDILA 239 T ELS +L+ EP+ EEIA +L+ V+DV + TS+D P+ + L D + Sbjct: 158 TFNELSLELEREPTDEEIARRLEWDVEDVRLTISAMPDATSLDQPVSSEESASELGDFIE 217 Query: 240 DEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTR 299 DE+ + DT + + + + L + R VL RR+GL E ATL ++G E+ ++R Sbjct: 218 DERTSDTPDTVLKELESSQLKEAIERLPERARYVLVRRYGLDDREPATLAELGDELKISR 277 Query: 300 ERVRQIQVEGLRRLREILQT 319 ERVRQ+Q E R L+ ++ Sbjct: 278 ERVRQLQREAERLLKAGIRR 297 >UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=A6G972_9DELT Length = 547 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 103/241 (42%), Positives = 164/241 (68%) Query: 82 RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 +A R A++ ++E+NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+KF+ +RG++ Sbjct: 301 KARREREAAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYK 360 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N +RT R+L + EP+ +EIAE+ Sbjct: 361 FSTYATWWIRQAITRAISDQARTIRVPVHMIESINKLIRTTRQLVQEFGREPTHQEIAEK 420 Query: 202 LDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 ++ PV+ V +LR+ + S++TPLG D + +L D++ D+ P + + + Sbjct: 421 MNMPVEKVRSILRIAKEPISLETPLGEDGDSSLGDLIEDKNALDPGSGVVERHLGDETRR 480 Query: 262 WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 L L ++ ++L RFG+ TLE+VGR+ +TRER+RQI+ + L +LR+ + + Sbjct: 481 ALASLTPREEKILRLRFGIGEASDHTLEEVGRDFSVTRERIRQIEAKALSKLRKADRAKQ 540 Query: 322 L 322 L Sbjct: 541 L 541 >UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus RepID=B8G577_CHLAD Length = 314 Score = 303 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 119/290 (41%), Positives = 167/290 (57%), Gaps = 27/290 (9%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVAS----------------------- 90 D LYL EIG PLLT E+E A+ +G A+ Sbjct: 11 ASDTIVLYLNEIGAEPLLTFEQEQQLAQTIAQGRRAAERLTNEPSLHSTEKKRLAAQVAA 70 Query: 91 ----RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 146 R ++I SNLRLVV IARRY GL LLDLI+EG++GL+RAV+KFD RG +FSTYA Sbjct: 71 GEQARAQLINSNLRLVVSIARRYQGHGLTLLDLIQEGSIGLMRAVDKFDAGRGLKFSTYA 130 Query: 147 TWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPV 206 T+WIRQ+I RAI + +RT+RLP+H+ + L+ R +EL+ +LD EP+ EE+A V Sbjct: 131 TYWIRQSIGRAIADHSRTVRLPVHLGERLSRLARLRQELAQQLDREPTLEELANAAGLSV 190 Query: 207 DDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFEL 266 + V R + TS+D D AL +IL D + P D + ++ + L +L Sbjct: 191 EQVERAEQAGLAPTSLDEAHTEDGGGALSEILTDPLQPTPFDEVSEGMLQADVQAALSQL 250 Query: 267 NAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 + ++R +L R+GL G TLE +G+ + LTRERVRQ++ E LR+LR+ Sbjct: 251 SPRERNILRLRYGLDGEPMHTLEQIGQRLRLTRERVRQLEYEALRKLRDP 300 >UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1 RepID=A6CZ07_9VIBR Length = 296 Score = 303 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 127/299 (42%), Positives = 188/299 (62%), Gaps = 11/299 (3%) Query: 31 VEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVAS 90 V+++ S ++E L+ GAT Y E+ LL+AE+E + AR+A GD + Sbjct: 6 VKEKSSHTTSGKDESLNIGAT---------YFKEVAGHDLLSAEDERHIARKARAGDTLA 56 Query: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 150 R+ +I SNLRLV++ A+RY NRGL DLI EGN+GLI+AV+KFDPE G+RFSTYA WWI Sbjct: 57 RQHLINSNLRLVIRTAKRYSNRGLDFYDLINEGNIGLIQAVDKFDPELGYRFSTYAVWWI 116 Query: 151 RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVS 210 +Q I+RAIMNQ RTIR+P+H+ K++ + A EL + +HEP++ EIAE+ + ++VS Sbjct: 117 QQAIDRAIMNQGRTIRVPVHVTKQIRECSKAAHELRKEGNHEPTSSEIAERTGRAPEEVS 176 Query: 211 RMLRLNERITSVDTPLGGDSE--KALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 ++L+L+E+ S+D + + L I D+ PE ++ ++++ + L Sbjct: 177 KLLKLSEQSLSLDNGWDEEGDKKDHLQTIDDDDVFELPEQDIVTQNLNKALIDLVDSLPD 236 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEAL 327 KQR +L RFGLL + TLE VG +G+TRERVRQIQ + LR+ L+ Q L + Sbjct: 237 KQRVILHHRFGLLDDDPKTLEQVGEIVGVTRERVRQIQKSAMETLRDKLKRQNLTRAEI 295 >UniRef50_Q3JAH2 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3JAH2_NITOC Length = 303 Score = 302 bits (775), Expect = 8e-81, Method: Composition-based stats. Identities = 135/262 (51%), Positives = 189/262 (72%), Gaps = 1/262 (0%) Query: 59 QLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 LY+ E G PLL+AEEE ++AR A +GD +R +IESNLR+V+++A R+ NRGL L+D Sbjct: 40 NLYMREAGKVPLLSAEEERHYARLAQQGDREARNHIIESNLRIVIRMATRHINRGLPLMD 99 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LIEEGNLGLI AVEKF+PE GFRFSTYA+WWIRQ IERA+MNQTRTIR+PIH+ K++ Y Sbjct: 100 LIEEGNLGLIDAVEKFNPELGFRFSTYASWWIRQAIERALMNQTRTIRVPIHVFKKIRCY 159 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 + AR + + EP EIA+ L +P++ + R L L S+D PL D++ L+D+L Sbjct: 160 QKEARYFRQRYNIEPHLGEIAKLLHEPLERIQRYLSLQAPEISLDDPLSEDTDDCLVDLL 219 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 DE+ N P + D K SI L +L +Q+E++ R+GL GYE TLE++G+++G+T Sbjct: 220 PDER-NNPAILWEIFDKKASIHNQLSQLPERQQEIIKCRYGLDGYEVTTLEEIGQKLGIT 278 Query: 299 RERVRQIQVEGLRRLREILQTQ 320 RERVRQIQ ++RLR+I++++ Sbjct: 279 RERVRQIQQTAIKRLRKIIESE 300 >UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0N062_9BACT Length = 286 Score = 302 bits (775), Expect = 9e-81, Method: Composition-based stats. Identities = 107/278 (38%), Positives = 168/278 (60%), Gaps = 1/278 (0%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 +++ T R + YL EIG L+T EEEV A+R +GD + ++ ++NLR VV + Sbjct: 6 ITKSITNRESASLDKYLQEIGKEELITVEEEVELAQRIKKGDQEALEKLTKANLRFVVSV 65 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A++Y N+GL+L DLI EGNLGLI+A EKFD RGF+F +YA WWIRQ+I +A+ Q+R + Sbjct: 66 AKQYQNQGLSLPDLINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIV 125 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 RLP++ V LN + + + PS EE+A +L+ P + V+ LR+ R SVD P Sbjct: 126 RLPLNQVGSLNKINKAFARFEQEHERTPSPEELANELELPKEKVTDTLRVAGRHVSVDAP 185 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 + +LLD+L + + ++ + + + L L ++R+++ FG+ G Sbjct: 186 FADGEDNSLLDVLVNPDSPNADRGLINESLSTEVDRALETLTERERDIIKYFFGI-GCSE 244 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 TLE++G + LTRERVRQI+ + +RRLR +++ L Sbjct: 245 MTLEEIGEKFDLTRERVRQIKEKAIRRLRHSSRSKLLK 282 >UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J802_MYCHP Length = 538 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 107/332 (32%), Positives = 182/332 (54%), Gaps = 31/332 (9%) Query: 16 EFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQ------RVLDATQLYLGEIGYS- 68 +FD N + L E D L+EE++ Q + D + Y+ IG Sbjct: 203 DFDANNL-------LKEYNDEDIKLSEEKVYDQDDIKLTNKLTETNDIVKWYMRWIGKYG 255 Query: 69 PLLTAEEEVYFARRALRGDVA--------SRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 LLT EE A++ A +R +++ NLRLV+ A+RY NRGL +DLI Sbjct: 256 KLLTTNEEQALAKKMQEAKEANNYYKYKKARDMLVKRNLRLVINNAKRYKNRGLNFIDLI 315 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 EGN G+++AV K+D +GF+FSTYATWWIRQ I RA+ +Q RT+R+P+H+V+ +N L+ Sbjct: 316 SEGNAGIMKAVSKYDYTKGFKFSTYATWWIRQAITRAVADQARTVRVPVHMVETINKILK 375 Query: 181 TARELSHKLDHEPSAEEIAEQLD--KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 REL + + P+ EEIA++ + V + ++N S+D +G + + D + Sbjct: 376 IERELQQENGYPPTDEEIAKKYGGDFTAEKVRYIRKINIDPISLDKNIGKEENSSFSDFV 435 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFE-LNAK-QREVLARRFGLLG-----YEAATLEDV 291 DE P +++ I + + E L+ + R+++ +RFG+ Y+ TL+++ Sbjct: 436 KDESVISPTSYASHEELSVIINEMIEEGLSDQADRDLIRKRFGINDLKGNKYKPHTLDEL 495 Query: 292 GREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 +E+G+++E+VRQ++ + LR+L+ + + L Sbjct: 496 SKELGISKEKVRQLETKVLRKLKHPQKRRKLK 527 >UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Planctomycetaceae RepID=D2R2I8_9PLAN Length = 545 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 107/267 (40%), Positives = 164/267 (61%), Gaps = 6/267 (2%) Query: 63 GEIGYSPLLTAEEEVYFARRALRGDV------ASRRRMIESNLRLVVKIARRYGNRGLAL 116 E+ + +T E RR +R + A++R + NLRLVV IA++Y NRGL+ Sbjct: 259 KELVHLMRITLETPATLKRRIVRTNEYRENYDAAKRVLSAGNLRLVVSIAKKYRNRGLSF 318 Query: 117 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELN 176 LDLI+EGN GL+RAV+KF+ RG++FSTYATWWIRQ I RAI +Q+RTIR+P+H++ ++ Sbjct: 319 LDLIQEGNTGLMRAVDKFEYARGYKFSTYATWWIRQAITRAIADQSRTIRVPVHMIDTMS 378 Query: 177 VYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLD 236 R+L +L EP+ EE+A +DD +L++ + S+D P+G + + Sbjct: 379 KVRAVTRQLVQELGREPTPEEVARVAGLTLDDARCVLKMARQPLSLDQPVGDHDDSYFGE 438 Query: 237 ILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIG 296 LAD +E P T +K I + + LN ++RE+L R+GL A TLE+VG+ Sbjct: 439 FLADHREEDPLYDTHQQALKHQIEEAMQGLNYREREILRLRYGLTDGYAYTLEEVGKIFS 498 Query: 297 LTRERVRQIQVEGLRRLREILQTQGLN 323 +TRERVRQI+ + +R+L++ + + L Sbjct: 499 VTRERVRQIETKAVRKLQQPYRNRSLT 525 Score = 44.4 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 2 SQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLY 61 S++ + HD E F E VE+ + + VE D E + D ++Y Sbjct: 30 SEDRIGTHDEFELDAFAEVDVEIDEIEVDVEVASEHGDELE-------SVDATDDPVRMY 82 Query: 62 LGEIGYSPLLTAEEEVYFARRALRGDVASRRRM 94 L ++G PLL +E+ AR + R M Sbjct: 83 LMQMGQIPLLNRTQEIDSARTIEATRLKFRHSM 115 >UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D27_DECAR Length = 309 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 155/294 (52%), Positives = 201/294 (68%) Query: 35 PSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRM 94 P + L E + + D TQLYL EIG PLLT EE+ +R GD ++R+RM Sbjct: 16 PDETVLPPEPERVLPEIELLEDVTQLYLSEIGAKPLLTPAEELATSRLVREGDFSARQRM 75 Query: 95 IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 154 IE NLRLVV IA+ Y NRG+ LLDLIEEGNLGLI A+EKFDPERGFRFSTYATWWIRQ I Sbjct: 76 IEHNLRLVVNIAKHYLNRGIPLLDLIEEGNLGLIHALEKFDPERGFRFSTYATWWIRQNI 135 Query: 155 ERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR 214 ER IMNQ+RTIRLP+HIVKE+NV LR R L + + E IA +D+PV DV R+L Sbjct: 136 ERGIMNQSRTIRLPVHIVKEINVVLRAMRHLESADKRDSTVERIALLIDRPVADVRRILS 195 Query: 215 LNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVL 274 LNE I S+D PL D + +++AD+ E+ PE Q ++ + WL +L +QR V+ Sbjct: 196 LNEHIASLDAPLEIDPNHTMAEVIADDGESDPESLLQSSEVGSLVDDWLEQLTERQRSVI 255 Query: 275 ARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALF 328 RR+GL G + ATL+ + ++GLTRERVRQIQ+EGL RLR+I++ ++ ++L Sbjct: 256 ERRYGLSGADLATLDVIACDLGLTRERVRQIQMEGLDRLRKIIKRGNISRDSLL 309 >UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JRK5_SYNJA Length = 361 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 124/326 (38%), Positives = 172/326 (52%), Gaps = 42/326 (12%) Query: 31 VEQEPSDNDLAEEELLSQGATQRVL--DATQLYLGEIGYSPLLTAEEEVYFARRAL---- 84 +E E + D A E L GA+ L DA YL IG P + EE+ +R+ Sbjct: 23 LEAESASQDPAAEADLEPGASGLRLNEDAVDHYLNTIGRVPRIDHAEEIELSRKIQQKLL 82 Query: 85 ------------------------------------RGDVASRRRMIESNLRLVVKIARR 108 R ++R++I +NLRLVV +A++ Sbjct: 83 IDQARREWRQQWGQDPSDEELAAALQIPVSTLRSRIRQGEQAQRKLINANLRLVVSVAKK 142 Query: 109 YGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP 168 Y NRG+ LDLI+EGN+GLIRA EKF+ ERGFRFSTYA WWIRQ I R I NQ RTIRLP Sbjct: 143 YLNRGVPFLDLIQEGNMGLIRATEKFNAERGFRFSTYAHWWIRQGITRCIANQARTIRLP 202 Query: 169 IHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG 228 +H+V ++ + RT REL P+ E+AE L V + + + S+D P+G Sbjct: 203 VHMVDKVRLLKRTNRELMKARGRRPTEAELAEALGIKVKKLRMIQQAAALPLSLDVPVGQ 262 Query: 229 DSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATL 288 + E L D+L DE++ P + ++Q + + L +R+VL R+GL G A TL Sbjct: 263 EGESRLGDLLPDERQEQPFEEILVQSLRQDVRSAMQALKPIERQVLELRYGLDGQRARTL 322 Query: 289 EDVGREIGLTRERVRQIQVEGLRRLR 314 +VG LTRER+RQI+ + LR+LR Sbjct: 323 REVGDHFNLTRERIRQIERDALRKLR 348 >UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2H3_ACIFD Length = 337 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 116/313 (37%), Positives = 162/313 (51%), Gaps = 26/313 (8%) Query: 30 LVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG--- 86 V ++ E + + + D +LYLG+IG LLT ++E RR R Sbjct: 13 FVHPASQESSGGGELVTKERQEREDEDLVRLYLGDIGSHELLTKDDEAELGRRMDRARDA 72 Query: 87 -----------------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEG 123 ++R I++NLRLVV IA+RY GL LLDLI+EG Sbjct: 73 QRQLDAGVKEPARRAELEELVRQGEEAKRAFIQANLRLVVSIAKRYQASGLPLLDLIQEG 132 Query: 124 NLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAR 183 N+GLI AVEKFD +GF+FSTYATWWIRQ I R I N RTIRLP+H L+ R Sbjct: 133 NMGLIHAVEKFDWRKGFKFSTYATWWIRQAITRGIANTGRTIRLPVHAGDSLSRVQRAQV 192 Query: 184 ELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKE 243 +L +L P+ E+A ++D P D + LR S+ PL D + L D++ D + Sbjct: 193 QLEVRLGRAPTVRELAAEVDLPYDKLVEALRFRAEPVSLSEPLRDDGDAELGDVVEDSQS 252 Query: 244 NGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVR 303 P D + + + + L L+ ++RE+L R+GL E TLE+VG LTRER+R Sbjct: 253 ATPFDVAAEHLLPSEVSRLLAPLDGREREILRLRYGLDRGEPRTLEEVGEYFHLTRERIR 312 Query: 304 QIQVEGLRRLREI 316 QI+ + +LR Sbjct: 313 QIEARAMSKLRHP 325 >UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9N7_SPHTD Length = 359 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 108/288 (37%), Positives = 160/288 (55%), Gaps = 22/288 (7%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA-------------------- 89 Q DA Y ++G LLT EE+ ++R G A Sbjct: 62 IDQATSDAVYRYFRDVGGHQLLTHREEIEYSRAVRAGLEARKRLEAGEDSEELHQIIERA 121 Query: 90 --SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 +R ++I NLRLVV IA++Y GL L+DLI+EGN+GL+ AVE++DPE G+RFSTYAT Sbjct: 122 KAAREKLIRHNLRLVVSIAKKYRTSGLPLIDLIQEGNIGLMTAVERYDPELGYRFSTYAT 181 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 +WIRQ I RA+ NQ+RTIR+P+H+ ++ RT +L + +E+A+ LD V+ Sbjct: 182 FWIRQAIGRAVANQSRTIRVPVHMHDLISKVRRTEAQLEQLHGRPATDQELAQALDLDVE 241 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 + + R +S+D P+G D E + D+L D + D ++ I + L L+ Sbjct: 242 RIEQARSAIPRTSSLDKPIGEDGESTIGDLLPDPASDEVVDQAVTSAIRDQIRRSLESLS 301 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 ++R VL RFGL G + TL ++ G++RERVRQI+ E L +LR Sbjct: 302 ERERGVLTLRFGLGGQQPQTLAEIAEYYGISRERVRQIEKEALAKLRN 349 >UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC14_9BACT Length = 479 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 104/264 (39%), Positives = 158/264 (59%), Gaps = 3/264 (1%) Query: 62 LGEIGYSPLLTAEE---EVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 + + L E E+ +R R + +R M+E NLRLVV IAR Y NRG LD Sbjct: 211 MRNLQAEMWLNPSELNVELQEMKRWQRKALEARTEMVECNLRLVVSIAREYQNRGQPFLD 270 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI+EGN+GL+RAVE+F+ RG++F+T ATWWIRQ I R+I NQ RTIR+P H++ L Sbjct: 271 LIQEGNIGLMRAVERFEYRRGYKFATCATWWIRQAISRSIANQARTIRIPTHMIDLLAKL 330 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 +R R+++ + +P+AE++A +L P+ V +L++ E S+ TP+G + L D + Sbjct: 331 IRVQRQMTQESGRDPTAEDLAGELHLPLRRVRALLKMAEEPISIHTPVGEEGGSRLGDFI 390 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D P +++ I L L ++RE+L +RFGL+ TLE++GR +T Sbjct: 391 EDHSVEDPSKQAAVAMLREKINAVLHTLTEREREILEQRFGLIDGRERTLEEIGRHFKVT 450 Query: 299 RERVRQIQVEGLRRLREILQTQGL 322 RERVRQI+ + LR++R + + L Sbjct: 451 RERVRQIEAKALRKMRHPERRRQL 474 >UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=B2IZW2_NOSP7 Length = 332 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 120/322 (37%), Positives = 174/322 (54%), Gaps = 44/322 (13%) Query: 38 NDLAEEELLSQGATQRVL---DATQLYLGEIGYSPLLTAEEEVYFARRALR--------- 85 N+L+ + L +++L D + YL EIG PLLT E+E+ FA++ + Sbjct: 2 NNLSHQYLEESNKKEKLLYTADTVRAYLREIGRIPLLTHEQEINFAKQVQKMMALLATKE 61 Query: 86 -------------------------------GDVASRRRMIESNLRLVVKIARRYGNRGL 114 ++++MI++NLRLVV IA++Y L Sbjct: 62 KLAIQLKRQPTQKEWIENINIGEKSLLQQLHQGQKAKQKMIQANLRLVVSIAKKYQRHNL 121 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 LDLI+EG+LGL R VEKFDP +G++FSTY WWIRQ I RAI Q RTIRLPIHI ++ Sbjct: 122 DFLDLIQEGSLGLERGVEKFDPTKGYKFSTYGYWWIRQAITRAIAEQGRTIRLPIHITEK 181 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKAL 234 LN R REL+ KL P+A +IAE+L + L L + S++ +G D + L Sbjct: 182 LNKIKRIQRELTQKLGRTPTAVDIAEELSLDPKQIRDYLLLARQPVSLELRVGSDKDIEL 241 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 D+L D PE ++Q+I L +LN +QR++L RFGL +L ++G+ Sbjct: 242 QDMLED-NGLSPELYADHKFLQQNIQNLLSKLNPQQRQILTFRFGLTDGNELSLAEIGQR 300 Query: 295 IGLTRERVRQIQVEGLRRLREI 316 +G++RERVRQI+ + L LR Sbjct: 301 MGISRERVRQIEQQALGSLRRH 322 >UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B6H5_METEA Length = 531 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 93/236 (39%), Positives = 149/236 (63%), Gaps = 1/236 (0%) Query: 82 RALRGD-VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 RA GD +R ++ SNLRLV +A++Y NR L +LDL++EGN+GL+RA+EKFD RG+ Sbjct: 282 RAAHGDLRKARDTLVTSNLRLVFSVAKKYTNRPLPILDLVQEGNIGLMRAIEKFDYRRGW 341 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYA WWI+Q+I R+I + RTIRLP+H+ ++ RTA L +L PS E+A+ Sbjct: 342 KFSTYAIWWIKQSISRSIADHGRTIRLPVHLHEKAAKIDRTAARLRAELGRPPSPPELAQ 401 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 LD V V R++ ++ S+D P+G D + D++ DEK P +K ++ Sbjct: 402 ALDIDVRQVERLMNMSRETVSLDLPVGEDGDVRFGDLVEDEKAPDPVGLADLAKLKDAVS 461 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 + +L +++ ++ RFG+ + TLE++G+ ++RERVRQ++ + ++RLR Sbjct: 462 DAVGDLPEREQTIIRMRFGIGYADQMTLEEIGQHFRISRERVRQVESKAIQRLRSP 517 Score = 43.2 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRL 101 + V DA Y EIG +LT EEEV A+R A+R + S + L Sbjct: 54 EAVPDALSFYAREIGRHRVLTREEEVALAKRVE----AARLSLFASFVAL 99 >UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=Q9KHE4_ANASP Length = 390 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 129/356 (36%), Positives = 191/356 (53%), Gaps = 45/356 (12%) Query: 13 EDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGAT----QRVLDATQLYLGEIGYS 68 E+ D + + +E + E S+ + +E+ + + DA + E+ Sbjct: 31 EEHSLDTLELIIEEEPPITENLDSEERDSGDEMAAARPSGYNKTEHDDAVGAFFKEMARY 90 Query: 69 PLLTAEEEVYFARRA--------LRGDVA------------------------------- 89 PLL +EEV ARR L+ D+ Sbjct: 91 PLLKPDEEVELARRVRFLEEVRDLQADLQLQIGQHPTKAQVAGQLEITEKQLENRLYQGR 150 Query: 90 -SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 ++R+MI SNLRLVV IA+RY NRG+ LDLI+EG +GL RA EKFDP++G++FSTYA W Sbjct: 151 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYW 210 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RAI N RTIRLPIHIV++LN + REL K PS E+AE L+ V Sbjct: 211 WIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEMAEALEISVPQ 270 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE-LN 267 + ++ +L + S++ +G + + L+D+L DE PE ++ M+Q I + L + L Sbjct: 271 LRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVLGDVLT 330 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 ++++V++ R+GL E TLE+VG L+RERVRQIQ + +R+LR + L Sbjct: 331 PREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLK 386 >UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C8_CYAPA Length = 427 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 181/349 (51%), Gaps = 51/349 (14%) Query: 21 GVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA 80 +E E++P + E G + D+ ++ E+G LL+AEEE+ + Sbjct: 71 RMEAAAPPETKEEKPKVSMPVERRGRRAGGSS---DSFNSFIKEVGSFELLSAEEEIELS 127 Query: 81 RRALR-----------------------------------------GDVASRRRMIESNL 99 R+ +R R+++SNL Sbjct: 128 RQIRDLVQLETVKKRLAARIGREPREDEWAMAAGTQPGPAFQSRILKGRRARARLVQSNL 187 Query: 100 RLVVKIARRYGNRG-LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAI 158 R VV IA++Y N+ + L DLI+EG++GL++A E+FD ++GF+F TYATWWIRQ I R++ Sbjct: 188 RWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAERFDLDKGFKFLTYATWWIRQAIFRSL 247 Query: 159 MNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER 218 +Q RTIRLP+H+ L + +T ++L+ +L P+ EE+A++L+ PV ++ + + Sbjct: 248 QDQGRTIRLPVHVHDSLYLIKKTRQQLASRLGRIPTPEELADELNIPVSRLAFITQAASL 307 Query: 219 ITSVDTPLGGDSEKA-----LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 S+++P+ ++ L D + E P++ + +++ + L L A++R++ Sbjct: 308 PISLESPISSETSSTKARNNLGDFIESEC-LQPDEQLERTMLREDLENVLATLKARERDI 366 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 + R+GL+ TL+++G +GLTRER+RQI+ +R+L+ + L Sbjct: 367 IRMRYGLVDGSPKTLDEIGEIVGLTRERIRQIEQSAMRKLKAPYRKAIL 415 >UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3J9H0_NITOC Length = 579 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 106/291 (36%), Positives = 175/291 (60%), Gaps = 5/291 (1%) Query: 37 DNDLAEEELLSQG--ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGD---VASR 91 D+ LA + QG + L A Q L ++ L +E +R +R ++ Sbjct: 283 DDLLAHSRIDRQGLQTQAKTLRAAQAVLLQVEVEAGLPLDELKAIHQRLVRSQFQAQRAK 342 Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 151 +M+E+NLRLVV +A++Y NRGL LDLI+EGN+GL++AV+KFD RG++FSTYA WWIR Sbjct: 343 AQMVEANLRLVVSVAKKYRNRGLTFLDLIQEGNIGLMKAVDKFDYHRGYKFSTYAHWWIR 402 Query: 152 QTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSR 211 Q I RAI +Q+RTIR+P+H++++L+ R + +L + E EE+AE+L + R Sbjct: 403 QAITRAIDDQSRTIRIPVHVMEKLSKLNRASYQLRQEKGREGRPEELAERLALSEQQIHR 462 Query: 212 MLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQR 271 M + ++ S++TPLG D + L +++ DE+ P + ++ + L L+ ++ Sbjct: 463 MHEIAKQPISLETPLGKDEDSQLGELMEDEQVPNPMEVAITAGLQTGAQQLLAALSPREA 522 Query: 272 EVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 +V+A RFG+ TL +V ++ L+RER+RQI+ + L +LR + ++ L Sbjct: 523 QVVAMRFGIGMDTDHTLGEVAQQFDLSRERIRQIEAQALGKLRRLGHSKAL 573 Score = 47.1 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 28/72 (38%) Query: 23 EVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARR 82 E D L++ + L +T V D Y+ E+G LLT EEE+ A+ Sbjct: 60 EALDSTLLLKNSSEEEIAETLPTLEGESTGAVSDMVYAYMREMGAHALLTREEEITLAKA 119 Query: 83 ALRGDVASRRRM 94 G S + Sbjct: 120 IETGLSQSTEAL 131 >UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13K37_BURXL Length = 628 Score = 299 bits (766), Expect = 9e-80, Method: Composition-based stats. Identities = 96/257 (37%), Positives = 157/257 (61%), Gaps = 3/257 (1%) Query: 62 LGEIGYSPLLTAEEEVYFARR---ALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 L +I L+ +E + +R+ A R +RR MIE+NLRLVV +A++Y G+ LLD Sbjct: 359 LAQIEAREGLSLQELKWISRKMNVADRELQDARRAMIEANLRLVVSVAKKYVQSGMPLLD 418 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 L++EGN+GL++AV++F+ RGF+FSTYATWWIRQ++ RAI + RTIR+P+H+ ++ Sbjct: 419 LVQEGNIGLMKAVDRFEYRRGFKFSTYATWWIRQSVSRAIADYGRTIRVPVHMADAMHRV 478 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 R A E+ + + E+A +L + V + R+ + S+D P+G +++ L +++ Sbjct: 479 KRVAGEMRQETGRPARSSELAARLGMSEEKVRSVQRVTRQPVSLDVPIGEEADTTLGEMV 538 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D P D D++ +I L L ++ +V+ RFG+ TLE++G + +T Sbjct: 539 EDSSTLAPLDALLQADLRVAIDAALGVLTPREAKVIKLRFGVDAVSEHTLEELGDQFDVT 598 Query: 299 RERVRQIQVEGLRRLRE 315 RERVRQIQ + L++LR Sbjct: 599 RERVRQIQNKALQKLRH 615 Score = 43.2 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 33 QEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRR 92 + ++++ A ++ D + YL E+G +PLLT E E+ ARR Sbjct: 86 DDVAEDETATALTIAISEPGPAADPMRAYLREMGATPLLTREGEIAVARRIEACLREMLE 145 Query: 93 RMIE--SNLRLVVKIARRYGNRGLALLDLI 120 + + + ++ A R L + DL+ Sbjct: 146 VIALRPATVDAILSRADRVAAGELDIDDLV 175 >UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0R030_BRAHW Length = 587 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 103/329 (31%), Positives = 189/329 (57%), Gaps = 6/329 (1%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDAT-- 58 ++Q L + + + E + ++ + L +E ++ A + V+ + Sbjct: 254 INQIEEYFEKLKKRYYKEISDFENYYKEIESGNKDIYIRLVDEFNITPEAIEAVITSFHK 313 Query: 59 -QLYLGEIGYSPLLTAEEEVYFARRA---LRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 Q+ + +I + E V + R+ R ++ ++++NLRLV+ IA++Y NRGL Sbjct: 314 AQVRMADIYDEVRIDKETLVEWVRKIDSSRRKIAQAKDHIVKANLRLVIAIAKKYVNRGL 373 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 DL++EGN+GLI+AV+KF+ ++G++FSTYATWWIRQ I R+I +Q RTIR+P+H++++ Sbjct: 374 HFFDLVQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQ 433 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKAL 234 +N R R+ + EPS +EIA+ L P V + + + S++ P+G + + L Sbjct: 434 INKVQRVLRQYMQQHGREPSIQEIAKALSWPESRVKSVRNVAKDPVSLNAPIGDEEDTIL 493 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 +++ D++ P++ T +++ I L L ++++V+ RFGL+ + TLE+VG Sbjct: 494 GELIEDKEFESPQNITTFKILRKQIDSILDSLPDREQKVIRMRFGLVDGYSHTLEEVGYV 553 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGLN 323 +TRER+RQI+ + +RRLR + + L Sbjct: 554 FKVTRERIRQIEAKAIRRLRAQSKKKELK 582 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%) Query: 22 VEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFAR 81 VE E + + + D A + + + D +LYL EIG LLT ++EV +++ Sbjct: 62 VEDKREFESLSKNQNKIDDAAKFIHVEDKVGNNDDPIRLYLKEIGKVSLLTHDDEVDYSK 121 Query: 82 RALRGDVASRRRMIESNL 99 + G+ ++ ++L Sbjct: 122 KIESGESEIENIILNTHL 139 >UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteria RepID=Q02AX1_SOLUE Length = 518 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 113/299 (37%), Positives = 181/299 (60%), Gaps = 3/299 (1%) Query: 27 EKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYL--GEIGYSPLLTA-EEEVYFARRA 83 E+A+ E D+++ E+ S Q L + + EI L + + R Sbjct: 213 ERAVDEISHLDSEIKRLEVRSNPTQQLRLRELKREIKKREIAAGATLPELKHSLTVIRHG 272 Query: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143 +++ ++E+NLRLVV +A++Y NRGL LLDLI+EGN+GL+RA +KF+ RG++FS Sbjct: 273 EAEAERAKKDLVEANLRLVVSVAKKYVNRGLHLLDLIQEGNIGLMRAADKFEYRRGYKFS 332 Query: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD 203 TYATWWIRQ I RAI +Q+RTIR+P+H+ + +N +LR REL +L P+ +EI ++D Sbjct: 333 TYATWWIRQAITRAIADQSRTIRIPVHMNESMNKFLRATRELEKELGRTPTNDEIGRRMD 392 Query: 204 KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL 263 PV+ V ++ ++ S++TP+G D E AL D++ D P D + +++ L Sbjct: 393 IPVEKVQKLKTISRDPVSLETPVGRDGESALGDLIEDRWVGSPVDAVIESNVRDETAGIL 452 Query: 264 FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 L+ K+ +V+ RFG+ TLE++G+E +TRER+RQI+ + LR+LR + + L Sbjct: 453 KTLSPKEEKVIRMRFGIGCEREHTLEEIGQEFDVTRERIRQIEAKALRQLRAPERARRL 511 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 9/115 (7%) Query: 10 DLNEDAEFDEN----GVEVFDEKALVEQEPS-DNDLAEEELLSQGATQRVLDATQLYLGE 64 D ED EN G+ D+ + E + + D + + D ++YL E Sbjct: 11 DQFEDQFLAENPEALGLSFEDDPKFFDPEAAHEADFLHPAPVEESI--YTDDPVRVYLRE 68 Query: 65 IGYSPLLTAEEEVYFARRALRGDVASRRRMIESNL--RLVVKIARRYGNRGLALL 117 +G PLLT E EV ARR RG + ++ + S L R+VV +A + + + Sbjct: 69 MGAVPLLTREGEVDLARRMERGKLRMQKAISRSALVQRVVVDVADQLKRANIEIE 123 >UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia sp. CCGE1002 RepID=D1TN62_9BURK Length = 663 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 158/240 (65%) Query: 83 ALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 142 A + ++R MIE+NLRLV+ IA++Y NRG+ LDLI+EGN+GL++AV+KF+ RG++F Sbjct: 418 AESKMLQAKREMIEANLRLVISIAKKYVNRGMHFLDLIQEGNIGLMKAVDKFEYRRGWKF 477 Query: 143 STYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL 202 STYATWW+RQ + R++ +Q RTIR+P+H+++ +N R +RE+ + E +A+++ Sbjct: 478 STYATWWVRQAVTRSLADQARTIRIPVHMMESINKLNRISREILQQTGREAHPAVLAQRM 537 Query: 203 DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKW 262 + P + V ML++ + S++TP+G +++ L D++ D P D +++ +I Sbjct: 538 EVPEEKVRAMLKIGRQPLSLETPVGDEADTTLSDVIEDPMATSPADAAVQANLRAAINTA 597 Query: 263 LFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 L L+ ++ +VL RFG+ TLE++G++ LTRER+RQI+ + +R+L +T L Sbjct: 598 LDALSPREAKVLRMRFGIDTASDCTLEELGKQFDLTRERIRQIESKAMRKLMHPNRTAKL 657 >UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella RepID=B0U099_FRAP2 Length = 578 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 +++ MIE+NLRLVV A++Y NRGL LD+I+EGN+GL++AV+KFD +GF+FSTYAT Sbjct: 338 TQAKKEMIEANLRLVVSEAKKYTNRGLHFLDIIQEGNIGLMKAVDKFDYRKGFKFSTYAT 397 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL-DKPV 206 WWIRQ I R+I +Q RTIR+P+H+++ +N R R++ + E + EEI E + Sbjct: 398 WWIRQAITRSIADQARTIRVPVHMIETINKVNRIKRQILQEKGREATEEEIIEYTPNMTK 457 Query: 207 DDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE- 265 D + ++L ++ S+++P+G D + + D + D+ P + ++++++I + + Sbjct: 458 DKLKKILNISHTPISMESPIGDDEDSTVGDFIEDKNNYSPIEAANLENLREAIKELIDTG 517 Query: 266 LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 L ++ +VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ ++ L Sbjct: 518 LTEREAKVLMMRFGIGMNTDHTLEEVGKQFNVTRERIRQIEAKALRKLKHPSRSAFLK 575 Score = 40.5 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 14 DAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTA 73 +A + G++V+D ++++ + ++E L + D ++Y+ E+G LL Sbjct: 47 EAILIDAGIDVYDRTPELDEDDDERKVSEANL--DDLKGKTSDPIRMYMREMGIVDLLDK 104 Query: 74 EEEVYFARRALRGDVASRRRM 94 + E A R G + Sbjct: 105 KGETDIAIRIEEGTTEVFSTI 125 >UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacteria RepID=B2J5S6_NOSP7 Length = 378 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 128/357 (35%), Positives = 188/357 (52%), Gaps = 45/357 (12%) Query: 12 NEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGAT----QRVLDATQLYLGEIGY 67 E+ D +E +V + ++ +++ + + DA + E+ Sbjct: 18 IEEPSLDSLDAVADEEPPIVVENLESDERDGDDMAAARPSGYNKTEHDDAVGAFFKEMAR 77 Query: 68 SPLLTAEEEVYFARRA----------------------------------------LRGD 87 PLL A+EEV ARR L Sbjct: 78 YPLLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQLESRLYQG 137 Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 ++R+MI SNLRLVV IA+RY NRG+ LDLI+EG +GL RA EKFDP++G++FSTYA Sbjct: 138 RVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAY 197 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I RAI N RTIRLPIHIV++LN + REL KL P+ E+AE LD V Sbjct: 198 WWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPTEGEMAEALDISVQ 257 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE-L 266 + ++ +L + S++ +G + + L+D+L DE PE ++ M+Q I + L + L Sbjct: 258 QLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVLGDVL 317 Query: 267 NAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 ++++V++ R+GL E TLE+VG L+RERVRQIQ + +R+LR + L Sbjct: 318 TPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLK 374 >UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKM1_THEYD Length = 479 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 112/326 (34%), Positives = 184/326 (56%), Gaps = 7/326 (2%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 +S+ +++ +L D E E ++ + + ++ ++ E + + Sbjct: 147 LSRTIIRLENLINDIEKIEQKIKEYGSLKELRKQINEKKRVGENT---KQLENLYKEIHA 203 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGD---VASRRRMIESNLRLVVKIARRYGNRGLALL 117 + +I L +E ++ + ++ +I NLRLVV IA+ Y RGL LL Sbjct: 204 EIKKIENESGLKIDELKNIWQKIYKAKCLVEDTKNELITRNLRLVVNIAKNYVGRGLPLL 263 Query: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177 DLIEEGN+GL++AV+KF E+GF+FSTYATWWIRQ I RA+++QT+TIR+P+H+++ N Sbjct: 264 DLIEEGNIGLMKAVDKFKYEKGFKFSTYATWWIRQAITRALIDQTKTIRVPVHMMEFYNR 323 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 + +REL+ +L EP+ EEIAE+L PV V + R + + TP+G D + L D Sbjct: 324 VTKASRELTQQLGREPNNEEIAEKLGVPVRKVEEVFRAIQDPIGLQTPIG-DEDTELEDF 382 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 + D+ P + ++ + I + L L K+ +V+ RFG+ TLE+VGR + + Sbjct: 383 IGDKTSPSPVSEAERTELSEHIQRILKTLTPKEEKVIKMRFGIGEDRDHTLEEVGRYLSI 442 Query: 298 TRERVRQIQVEGLRRLREILQTQGLN 323 TRERVRQI+ + LR+L+ + + L Sbjct: 443 TRERVRQIETKALRKLKHPSRMRLLK 468 Score = 42.8 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%) Query: 19 ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVY 78 E+ ++V + + + + ++ EE + V D Q Y +G P+LT EEEV Sbjct: 40 EDLIDVLSDMGVRVVDEDEEEVFLEEEEEIEEEEHVEDLVQAYFNSMGDIPILTKEEEVE 99 Query: 79 FARRALRG 86 A++ G Sbjct: 100 LAKKLQEG 107 >UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=7 Tax=Planctomycetaceae RepID=D2R6R0_9PLAN Length = 544 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 96/236 (40%), Positives = 153/236 (64%) Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 A++R++ NLRLVV IA++Y NRGL+ LDLI+EGN GL+RAV+K++ RGF+FSTYAT Sbjct: 301 EAAKRQLSSGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGFKFSTYAT 360 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I RAI +Q RTIR+P+H++ L+ ++L +L EP+ EE+ +D P++ Sbjct: 361 WWIRQAITRAIADQARTIRIPVHMIDVLSKLRNVQKKLLQELGREPTTEEVTALVDLPLE 420 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 +V R+L + S+D P+G + + + + D + P + +++ I L L Sbjct: 421 EVKRVLDIGRHPVSLDRPVGDSEDSSFGEFIEDTASDNPVLCATNGILRERIDGLLKTLT 480 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 ++RE++ R+GL TLE+VGR +TRERVRQI+ + +R+L+ ++++ L Sbjct: 481 WREREIIRLRYGLCDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLE 536 Score = 41.7 bits (97), Expect = 0.034, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 17 FDENGVEVFDEKALVEQEPSDNDLAEEEL--LSQGATQRVL-DATQLYLGEIGYSPLLTA 73 + G+E+ D+ + +P E + L ++++ D +LYL ++ PLL+ Sbjct: 47 LEHAGIELVDQPPVEPGKPRLFVPRESDAVPLKPEESKKLNSDPIRLYLSQMAEIPLLSR 106 Query: 74 EEEVYFARRAL 84 +EE+ A++ Sbjct: 107 QEEISLAKKIE 117 >UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria RepID=Q601Y8_MYCH2 Length = 676 Score = 297 bits (760), Expect = 6e-79, Method: Composition-based stats. Identities = 110/332 (33%), Positives = 180/332 (54%), Gaps = 24/332 (7%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLG 63 ++LK+ ++++ EN + + + E N L + D + Y+ Sbjct: 352 DSLKIQEIDDLDYITENSPNQYHKPKVYSDEVYLNKLTD-----------TSDMIKWYMR 400 Query: 64 EIGYS-PLLTAEEEVYFARRAL---RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDL 119 IG LLTAEEE A++ R +R +I+ NLRLVV A+RY NRGL +DL Sbjct: 401 WIGKYGKLLTAEEERELAKKMKIKGRIGKKARDTLIKRNLRLVVNSAKRYKNRGLGFIDL 460 Query: 120 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179 I EGNLG+I+AV K+D RGF+FSTYATWWIRQ I RA+ +Q R IR+P+H+V+ +N Sbjct: 461 ISEGNLGIIKAVAKYDYTRGFKFSTYATWWIRQAITRAVADQARLIRIPVHMVETINKIN 520 Query: 180 RTARELSHKLDHEPSAEEIAEQLD--KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 + REL + P+AEEI+E+L D + + ++N S+D +G + + + D Sbjct: 521 KVERELQQEKGLNPTAEEISERLGGEFSPDKIRYIKKINIDPISLDKAIGKEEDSSFSDF 580 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLF-ELNAKQREVLARRFGLLGYEA------ATLED 290 + DE P D ++ + +++ + L+ +R+ + RR+G+ + + E+ Sbjct: 581 IKDENMISPVDYAIREEKAKVLLEMIDSTLDYDERDFIKRRYGVGTNDEGIPYQAHSFEE 640 Query: 291 VGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 + +T+ERVRQI+ + L++LR + L Sbjct: 641 LAAMRRVTKERVRQIEAKILKKLRTPHRRLSL 672 >UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes RepID=Q2SRY7_MYCCT Length = 505 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 104/326 (31%), Positives = 178/326 (54%), Gaps = 60/326 (18%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVAS----RRRMIESNLRLVVKIA 106 ++ D + Y +IG +P+LT ++E+ +A+ A+ D R ++IESNL+LV+ +A Sbjct: 164 ETKIQDIIKTYFYKIGQAPILTKDQEIMYAKMAVSDDPEDVKEGRNKLIESNLKLVISVA 223 Query: 107 RRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIR 166 R++ NRGL DLIEEGN+GL++AV+KF+ E+GF+FSTYATWWI Q I RAI +Q RTIR Sbjct: 224 RKHLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYATWWISQAITRAIADQARTIR 283 Query: 167 LPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL--DKPVDDVSRMLRLNERITSVDT 224 +P+H+V+ +N R R+L+ +L EP+AEEIA ++ D V + +L+ S++ Sbjct: 284 IPVHMVETINKLARVERQLTQELGREPNAEEIANRVGEGITSDKVIEIKKLSIEPVSLEK 343 Query: 225 PLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYE 284 P G + + D + D+ P + T+ + +K+ + K ++ ++ +V+ R+G++ Sbjct: 344 PFGDEDDTHFGDFVEDKDMVSPSEYTEKEILKEVMDKVFEDMPPREEKVIRMRYGIVPTR 403 Query: 285 AATL-------------------EDV---------------------------------- 291 TL E++ Sbjct: 404 LRTLLRLAQECNDTNAKELKQAIEELDIHLDTPIEKVRKFNNEIINNNLAKYDSARTLEE 463 Query: 292 -GREIGLTRERVRQIQVEGLRRLREI 316 G+E+ +TRER+RQI+ + +R+L++ Sbjct: 464 VGKELNVTRERIRQIEAKTIRKLKQP 489 >UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacteria RepID=B7K407_CYAP8 Length = 328 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 41/301 (13%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALR------------------------------ 85 D + YL EIG PLLT E+E+ + ++ R Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNL 77 Query: 86 ----------GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 ++R+MIE+NLRLVV IA++Y R + LDLI+EG+LGL R VEKFD Sbjct: 78 KEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 P +G++FSTYA WWIRQ I RAI Q RTIRLPIHI ++LN +T RELS KL + Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATP 197 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 EIA L+ + L + + S+D +G + + L ++L D + P+ + + Sbjct: 198 AEIAAVLEIEPSQIRECLSMARQPISLDVRVGDNQDTELSELLEDHEA-SPDQYITQELL 256 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 +Q + + EL +QR VL RFGL + +L +G+++ ++RERVRQ++ + L +LR Sbjct: 257 RQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQALAQLRR 316 Query: 316 I 316 Sbjct: 317 R 317 >UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WS32_CYAA5 Length = 416 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 99/243 (40%), Positives = 160/243 (65%), Gaps = 1/243 (0%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 +R L ++ +M+ SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EKFD E+G+ Sbjct: 171 KRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 230 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYATWWIRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS ++ +P+ EEIA Sbjct: 231 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAT 290 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 +++ ++ + + + + S++TP+G + + L D + + E PED + +++ + Sbjct: 291 RMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGE-TPEDEVSKNLLREDLE 349 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 L L+ ++R+VL R+GL TLE++G+ +TRER+RQI+ + LR+LR + Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 409 Query: 321 GLN 323 L Sbjct: 410 ILK 412 Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%) Query: 11 LNEDAEFDENGV-EVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSP 69 ++ED E N + E +K D ++++ ++ D+ ++YL EIG Sbjct: 21 VDEDIESSGNDIAETETKKTRKISASRRRDPSKKKPYTE-------DSIRVYLQEIGRIR 73 Query: 70 LLTAEEEVYFARRA 83 LL AEEE+ AR+ Sbjct: 74 LLRAEEEIELARKI 87 >UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycoplasma RepID=RPOD_MYCPN Length = 499 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 108/320 (33%), Positives = 181/320 (56%), Gaps = 13/320 (4%) Query: 21 GVEVFDEKALVEQEPSDNDLAEEELLSQGATQR--VLDATQLYLGEIGYSPLLTAEEEVY 78 VE + Q+ S D EEL ++ + R V D + +LG + S +L E E Sbjct: 173 DVEEHIHEFRANQDLSIIDEDIEELTTKNISNRDKVDDNVRFFLGSLDSSKMLDFESEQR 232 Query: 79 FARRALRGDVASR----RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 A+ D SR +++ SNLRLVV IA+++ RGL DLI+EGNLGL++A+ KF Sbjct: 233 IAKVLNSTDEESRKYAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKF 292 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 + G +FSTYATWWI+Q I RAI +Q RT+R+P+H+V+ +N + R L+ +L EP+ Sbjct: 293 NWSLGNKFSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERALNQELGREPT 352 Query: 195 AEEIAEQL-----DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDT 249 AEE+AE++ V ++ + RL+ S+D +G D E D + D P++ Sbjct: 353 AEELAEKMGGQAEGFTVKKIAEIKRLSLDPVSLDKTVGHDEESQFGDFVRDTDAQMPDEF 412 Query: 250 TQDDDMKQSIVKWLFE-LNAKQREVLARRFGL-LGYEAATLEDVGREIGLTRERVRQIQV 307 T+ + I + L L+ ++ ++ R G+ E TL++V ++I + RE++RQI+ Sbjct: 413 TESRSNYEKIDELLNNCLSEQEELIVRMRIGMPPYNETKTLDEVSQKIKIPREKIRQIET 472 Query: 308 EGLRRLREILQTQGLNIEAL 327 + +R+LR+ ++ +++ + Sbjct: 473 KAIRKLRQAVRNNHMSLSFM 492 >UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellular organisms RepID=RPOD_SYNY3 Length = 425 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 159/234 (67%), Gaps = 1/234 (0%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ +M++SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EKFD E+G++FSTYATWW Sbjct: 189 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 248 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS ++ +P+ EEIAE+++ ++ + Sbjct: 249 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKL 308 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + + + S++TP+G + + L D + + E PED + +++ + L L+ + Sbjct: 309 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADGE-TPEDEVSKNLLREDLENVLDTLSPR 367 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 +R+VL R+GL TLE++G+ +TRER+RQI+ + LR+LR + L Sbjct: 368 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 421 Score = 46.3 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Query: 27 EKALVEQEPSDNDLAEEELLSQGATQR---VLDATQLYLGEIGYSPLLTAEEEVYFARRA 83 E E ++ + + + A ++ D+ ++YL EIG LL AEEE+ AR+ Sbjct: 39 EDLEQEVAATEGKEKKVRKIRKDAVKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARQI 98 Query: 84 LRGDVASRRRMIESNLRL 101 +I NL L Sbjct: 99 ADLLE---LELIRDNLTL 113 >UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycetales RepID=A6CE36_9PLAN Length = 588 Score = 293 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 94/251 (37%), Positives = 156/251 (62%), Gaps = 2/251 (0%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 +R +++++ NLRLVV IA++Y NRGL+ LDLI+EGN GL+R VEK++ RG Sbjct: 310 IKRRFDDWTEAKQQLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEYRRG 369 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 ++FSTYATWWIRQ I RA+ + RTIR+P+H+ + ++ + ++ + EP+ EE+A Sbjct: 370 YKFSTYATWWIRQAITRAVADHARTIRIPVHMFQSISTLKARSEQIRQETGREPTMEELA 429 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 + + V++ R+++ + S+DTP+G + + D L D E+ P D + +K I Sbjct: 430 DSVGLGVEETERIMKTWKHPISLDTPVGESEDSSFGDFLEDGHESSPADAAMREMLKDKI 489 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 L L ++RE++ R+GL + TLE+ GR +TRER+RQI+ + LR+L+ ++ Sbjct: 490 EHVLKSLTYREREIIRLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKALRKLQHQTRS 549 Query: 320 QGLN--IEALF 328 L ++A+F Sbjct: 550 AHLRGFVDAIF 560 Score = 41.7 bits (97), Expect = 0.041, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 36/86 (41%) Query: 12 NEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLL 71 +D E + + D+D A ++ + D ++YL ++G PLL Sbjct: 62 IDDEEVASVDSSANTHSDVAQGADEDSDDASSSIVEPETSLSSRDPIRMYLSQMGNIPLL 121 Query: 72 TAEEEVYFARRALRGDVASRRRMIES 97 + E++ A++ RR ++ES Sbjct: 122 SRSREIFLAKKIEITRKRFRRTVLES 147 >UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RNE4_9CLOT Length = 298 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 107/270 (39%), Positives = 164/270 (60%), Gaps = 5/270 (1%) Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNR-- 112 D+ Q YL + G PLLT EEE+ A G +R++MI SNLRLV+ A++Y Sbjct: 26 TDSVQWYLKQAGVGPLLTKEEEIELAYLIQEGSDEARQKMISSNLRLVINQAKKYVTYTQ 85 Query: 113 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172 L LLDLI+EGNLGLI+AVEK++PE GFRFSTYA+WWI+Q I RAI + IRLP+H Sbjct: 86 SLTLLDLIQEGNLGLIKAVEKYNPELGFRFSTYASWWIKQAITRAISVLDKAIRLPVHFC 145 Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232 +++ R E+ + D + E++ + + ++L S++TP+G E Sbjct: 146 EDIQKVKRATHEIMQQNDIV-TPEKLKDITGFSEGKIEKILMNMNHTISLETPVGE--EA 202 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 L D + D E+ ++ M++ I + + L +++ +LA RFGL G TLE+VG Sbjct: 203 TLGDFVEDTLTPSIEEQAMENAMQREISRQMECLRPREQTILALRFGLNGQNPHTLEEVG 262 Query: 293 REIGLTRERVRQIQVEGLRRLREILQTQGL 322 +++G+TRER+RQI+++ LR+LR +++ L Sbjct: 263 KQMGVTRERIRQIEMKALRKLRHPNRSRYL 292 >UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilonproteobacteria RepID=RPOD_HELPJ Length = 681 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 104/272 (38%), Positives = 165/272 (60%), Gaps = 12/272 (4%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 L++ A++ D L EI + +R ++ +M +SNLRLVV I Sbjct: 409 LTKEASEEGFDLAPNKLKEI-----------LEQIKRGKLISDRAKNKMAKSNLRLVVSI 457 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A+R+ +RGL LDLI+EGN+GL++AV+KF+ E+GF+FSTYATWWI+Q I RAI +Q RTI Sbjct: 458 AKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQARTI 517 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 R+PIH++ +N + R+ + EP E +AE++ +D V ++++ + S++TP Sbjct: 518 RIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETP 577 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYE- 284 +G D + D + D+ D +D+K I L +LN +++ V+ RFGLL E Sbjct: 578 VGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDES 637 Query: 285 AATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 TLE++G+E+ +TRERVRQI+ +++LR Sbjct: 638 DRTLEEIGKELNVTRERVRQIESSAIKKLRSP 669 Score = 41.7 bits (97), Expect = 0.033, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 17 FDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEE 76 D+ +K L E+ D +E+ + + R ++YL E+G LL+ +EE Sbjct: 131 IDKIKNTEEKQKVLDEELEDGYDFLKEKDFLEWS--RSDSPVRMYLREMGDIKLLSKDEE 188 Query: 77 VYFARRALRGD 87 + +++ G+ Sbjct: 189 IELSKQIRLGE 199 >UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular organisms RepID=RPSB_ANASP Length = 332 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 163/305 (53%), Gaps = 41/305 (13%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALR-------------------------- 85 DA +YL +IG PLL+ E+E++FA++ + Sbjct: 19 SYTADAVSIYLHKIGRVPLLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWAD 78 Query: 86 --------------GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAV 131 ++++MI++NLRLVV IA++Y R L LDLI+EG LGL R V Sbjct: 79 KMQLKEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGV 138 Query: 132 EKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDH 191 EKFDP G++FSTYA WWIRQ I RAI Q+RTIRLPIH+ +LN RELS KL + Sbjct: 139 EKFDPTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGY 198 Query: 192 EPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQ 251 EIA+ L+ + L+L + S+D +G + + L D+L D+ PE + Sbjct: 199 IAGVTEIAQALNLEPSQIREYLQLVRQPVSLDMRIGFEQDTQLQDLLKDDGM-SPERYAE 257 Query: 252 DDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLR 311 + + Q I L +L +Q+EVL RFGL G TL + + +G++RERVRQ++ + L Sbjct: 258 RELLYQDIHNLLAKLTPQQKEVLILRFGLAGGCELTLVQISQRMGISRERVRQVEKQALT 317 Query: 312 RLREI 316 LR Sbjct: 318 LLRRY 322 >UniRef50_B2VA41 RNA polymerase sigma factor n=2 Tax=Hydrogenothermaceae RepID=B2VA41_SULSY Length = 281 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 98/261 (37%), Positives = 155/261 (59%), Gaps = 2/261 (0%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY 109 A Q L QLY+ ++G P+L+ EEE A RA +GD + ++++E NLR VV IA+ + Sbjct: 2 AEQDELTTLQLYMQQMGKHPMLSPEEEKELAIRAKQGDKEALKKLVEGNLRFVVSIAKNF 61 Query: 110 GNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 G+ L DLI GNLGLI A ++FDP++ +F +YA WWIRQ I + I QT +R+P+ Sbjct: 62 MGWGVPLTDLIAAGNLGLIEAAKRFDPDKNVKFISYAVWWIRQAIMQTIFQQTGAVRIPV 121 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL--G 227 + T +L +L EP+ EEIA++L+ V V L + S+D PL G Sbjct: 122 KESLFIAKVKETYEKLKEELGREPTEEEIAKRLNTSVKKVKNALSIVRLPISLDMPLGEG 181 Query: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 G+ + LLD+L+ + E ++ + + + L L+ +++E++ R+GL G E T Sbjct: 182 GEEDFTLLDVLSKKGTEDIEKELIEETIHKELESMLDVLDEREKEIIKMRYGLDGEEPKT 241 Query: 288 LEDVGREIGLTRERVRQIQVE 308 LE+VG ++G++RERVRQ++ Sbjct: 242 LEEVGEKLGISRERVRQLEQR 262 >UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderia cepacia complex RepID=A4JT57_BURVG Length = 628 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 144/246 (58%), Gaps = 3/246 (1%) Query: 83 ALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 142 R +R + ++NLRLVV IA+RY +RGL DLI+EGN+GL++A++++D RGFRF Sbjct: 384 IERAMQPARMGLFDANLRLVVSIAKRYPDRGLPFADLIQEGNIGLLKAIDRYDHRRGFRF 443 Query: 143 STYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL 202 STYATWWIRQ I A+ + RTIR+P H V +N R ARE + + E+A Q+ Sbjct: 444 STYATWWIRQAITHALADLGRTIRVPTHTVDAINKLTRIAREHRQRSGAAATPHELAVQM 503 Query: 203 DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKW 262 +P+D V ++ + + S D P+ + E +D+ D PED ++ +I Sbjct: 504 GEPLDKVRDLMSIVKEPMSADAPVSPEGEMTFVDVAPDVSTPSPEDAAGAAQLRDTIAAM 563 Query: 263 LFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 + L A++ VL R+GL E +L D+GR++ L+ ERVRQI+ L RLR + GL Sbjct: 564 IGRLPAREATVLRLRYGLHADEGCSLRDIGRQLNLSAERVRQIEASALARLRA---SDGL 620 Query: 323 NIEALF 328 ++ F Sbjct: 621 DVLRAF 626 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 53 RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRM 94 R D +LYL E+G +PLLT +EE+ A+R RG AS + Sbjct: 116 RTTDPVRLYLREMGMTPLLTRDEEIMHAQRIERGRAASVAVL 157 >UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A692_GEMAT Length = 295 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 98/265 (36%), Positives = 156/265 (58%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG 110 ++ D YL E+ PLL A EE+ A++ GD + + +++ NLR V+ +A++Y Sbjct: 19 SEPERDILDQYLYEVSTYPLLKAAEEIELAKKIRAGDQDALQELVKRNLRFVISVAKKYQ 78 Query: 111 NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH 170 NRGL L+DLI EGN+GL+ A KFDP++G +F +YA WWIRQ I ++ Q RT+R+P++ Sbjct: 79 NRGLPLIDLIGEGNVGLLTAARKFDPDQGVKFISYAVWWIRQAILSSLARQGRTVRVPLN 138 Query: 171 IVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDS 230 +L+ ++ + L KL EPS EE+A+ VD V + LN +D P+ D Sbjct: 139 RTADLSRIIKASEILRQKLRREPSPEELAQVTGLSVDVVQSLAALNTGDVRLDAPMDPDG 198 Query: 231 EKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLED 290 +++L++ ++ E+ + + I + L L + +VL FGL G TLE+ Sbjct: 199 DRSLIERFVADEMPDTEEEAMNRFLTDEIEQALSTLPPRDAKVLRLYFGLEGGREHTLEE 258 Query: 291 VGREIGLTRERVRQIQVEGLRRLRE 315 +G +G+TRERVRQ++ L+RLRE Sbjct: 259 IGSMLGVTRERVRQLRDRALKRLRE 283 >UniRef50_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DV14_SULAA Length = 282 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 100/259 (38%), Positives = 152/259 (58%), Gaps = 2/259 (0%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGN 111 + L QLY+ ++G P+LT EEE A RA +GD + ++++E NLR VV IA+ + Sbjct: 5 DQELTTLQLYMQQMGKYPMLTPEEERELAIRAKKGDKEALKKLVEGNLRFVVNIAKNFMG 64 Query: 112 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 171 G+ L DLI GNLGLI A ++FDP++ +F +YA WWIRQ I + I QT +R+PI Sbjct: 65 WGVPLTDLIAAGNLGLIEAAKRFDPDKNVKFISYAVWWIRQAIMQTIFQQTGAVRIPIKE 124 Query: 172 VKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL--GGD 229 ++ +L L EP+ EEIA++L V V L + + S+D PL GG+ Sbjct: 125 SLFISKVKNAYEKLKESLGREPTEEEIAKELKTSVKKVKNALAIVRQPISLDMPLGEGGE 184 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLE 289 + LLDIL+ + E + +K+ + L L+ ++RE++ R+GL G E TLE Sbjct: 185 EDFTLLDILSKKGTEDVEKDLVESTLKEEFERLLNVLDEREREIIKLRYGLEGLEPKTLE 244 Query: 290 DVGREIGLTRERVRQIQVE 308 +VG +G++RERVRQ++ Sbjct: 245 EVGEMLGISRERVRQLEQR 263 >UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASS7_RUBXD Length = 282 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 117/261 (44%), Positives = 161/261 (61%), Gaps = 1/261 (0%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D YLG I LLTA EEV +RRA GD A+RRR+IESNLRLVV IA+RY RG+ Sbjct: 7 DVLTQYLGRIREGRLLTAGEEVELSRRARAGDGAARRRLIESNLRLVVAIAKRYRGRGVP 66 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 DLI+EGN GLIRAVEKFDPE G RFSTYATWWIRQ + RA+ +Q R +RLP H+V + Sbjct: 67 FEDLIQEGNAGLIRAVEKFDPEMGNRFSTYATWWIRQAVTRAVADQGRAVRLPAHVVDSV 126 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA-L 234 R LS +L EP+ EE+A +L ++ R+ +++ I+S+ LG + + A L Sbjct: 127 YRLRRAESALSVELGREPTDEEVAGRLGTSPEEARRLREVSQPISSISARLGDEEDGAEL 186 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 D+L DE + + + + + + L ++ VL R GL G A TL +V Sbjct: 187 GDLLPDEAASEEYARVEAGPWRGVLREAVGSLPEREARVLRLRHGLDGERARTLREVSEI 246 Query: 295 IGLTRERVRQIQVEGLRRLRE 315 +G+++ER RQ++++ LR LR Sbjct: 247 LGISQERARQVELKALRTLRS 267 >UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsia RepID=Q2GE94_NEOSM Length = 620 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 106/323 (32%), Positives = 165/323 (51%), Gaps = 37/323 (11%) Query: 24 VFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRA 83 V + L E D + EE LS + E+ + + + R+ Sbjct: 305 VVLSELLKEHNICDTHFSLEEFLSP-------------IRELEKNEGMDYRSISFLTRKV 351 Query: 84 ---LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 L A++ RM+E+NLRLV+ IA++Y NRG+ DLI+EGN+GL++AV+KFD RG Sbjct: 352 ATHLDNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKAVDKFDHRRGH 411 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYATWW RQ I RAI + +R P+HI + N +RT R L + EP+ EEIA Sbjct: 412 KFSTYATWWCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRLYNLNGREPTVEEIAN 471 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEK-ALLDILADEKENGPEDTTQDDDMKQSI 259 L D V + L++N+ S+++P+G DS + D + D+ D ++++ + Sbjct: 472 LLKISPDKVKKSLKVNQDPISLESPVGDDSNSGSFGDFIEDKNAVSQVDVVLSKNLRKVL 531 Query: 260 VKWLFELNAKQREVLARRFG--------------------LLGYEAATLEDVGREIGLTR 299 + L L+ ++ ++L RFG L TLE VG +TR Sbjct: 532 DEALAMLSPREEKILRYRFGLCNSVHSPEDEHYLKSLKIDLNRGTNLTLEQVGILYNVTR 591 Query: 300 ERVRQIQVEGLRRLREILQTQGL 322 ER+RQI+ + LR++R ++ L Sbjct: 592 ERIRQIESKSLRKMRSPSRSIKL 614 Score = 47.1 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE 74 ++ +E+G+ + ++ E + EEE + D +LYL E+ Y LL+ + Sbjct: 51 SKLEESGIGILEKDEEDELSEEVKEEDEEEDEAADILGHTDDPVRLYLREMSYVKLLSRD 110 Query: 75 EEVYFARRALR 85 +EV A+ + Sbjct: 111 DEVEIAKAIVA 121 >UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteobacteria RepID=Q6AK94_DESPS Length = 447 Score = 290 bits (742), Expect = 7e-77, Method: Composition-based stats. Identities = 91/235 (38%), Positives = 150/235 (63%), Gaps = 1/235 (0%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ MI +NLRLVV IA+RY ++GL L DLI+EGNLGL+RAV +FD +G +FSTYA+WW Sbjct: 211 AKDTMIRANLRLVVSIAKRYMHQGLTLADLIQEGNLGLMRAVFRFDYTKGNKFSTYASWW 270 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI+++TRTIRLP+H ++ + + + L +L EP+ EI++ + P+D + Sbjct: 271 IRQAITRAILDKTRTIRLPVHFLELRSQFFKAFYALFKELGREPTPLEISKTTNLPMDKI 330 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 +L + S++TP+G D + L D L +++ P + Q+ ++ + + L L+ + Sbjct: 331 LSILEASREPISLETPVG-DDDSTLGDFLENQESQSPYEAVQNRELSGRVTEILSTLSDR 389 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNI 324 + +++ RFG+ TLE++G+ ++RER+RQI+ + L RLR + L Sbjct: 390 EEKIIRLRFGIGEKAEYTLEEIGKRFNVSRERIRQIEKKALNRLRHSSRRDKLKF 444 >UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=2 Tax=stramenopiles RepID=A5JEM2_9STRA Length = 404 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 103/329 (31%), Positives = 165/329 (50%), Gaps = 55/329 (16%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDV--------------------------- 88 D + Y+ ++ +LTA+EE+ R+ RG Sbjct: 73 DTMKEYVKDLRTVDMLTAQEEILLTRQIKRGMEIEKALVTLEKTLGRKPTEEEWVNFVGL 132 Query: 89 --------------ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 S+ +I +NLRLVV A+ Y RG++ DL++EG GL +A EKF Sbjct: 133 KSIDDIRKNLKRASKSKSAIINANLRLVVSTAKAYQYRGVSFQDLVQEGTCGLHKATEKF 192 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 DP +GFRFSTYATWWI+Q I RA+ +Q+R +RLP+H+ L R + EP+ Sbjct: 193 DPRKGFRFSTYATWWIKQGIMRAVTDQSRVVRLPVHVHDALFHIRRAKANFWTEHLREPT 252 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLG--------GDSEKALLDILADEKENGP 246 E+AE + + ++++S+D +G S+ A+ D+ D + N P Sbjct: 253 LAELAEATGLTPQKIVFYDTVKDKVSSIDKTVGIGTKTNSMEKSQIAISDMCKDSR-NKP 311 Query: 247 EDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQ 306 E+T Q + ++Q I + + L+ ++++V+ R+GL E TLE++G +TRERVRQI+ Sbjct: 312 EETAQVESLRQDISRLINTLSPREQDVVRMRYGLDDGEIRTLEEIGSIFSVTRERVRQIE 371 Query: 307 VEGLRRLREILQTQGLN-----IEALFRE 330 L +LR+ + L ++ALF E Sbjct: 372 ARALHKLRQPYRNHRLKGQLDSVDALFHE 400 >UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 Tax=Actinomycetales RepID=HRDC_STRCO Length = 339 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 111/298 (37%), Positives = 163/298 (54%), Gaps = 31/298 (10%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRG----------------------------- 86 D YL +IG +PLLTAE+EV A R G Sbjct: 37 DLLGQYLTQIGATPLLTAEDEVRLATRIEAGVRAREELETADTGEPAPTPRRRRTLEETV 96 Query: 87 --DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFST 144 ++ M+ +NLRLVV +A+R+ +RGL LLD+I+EGNLGLIRAVEKFD +GF+FST Sbjct: 97 HDGQEAKDHMVRANLRLVVSMAKRHAHRGLPLLDVIQEGNLGLIRAVEKFDHTKGFKFST 156 Query: 145 YATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDK 204 YATWWIRQ IER + RT+RLP+H+V++L + R+L LD EP+ EE+A + Sbjct: 157 YATWWIRQAIERGLATHARTVRLPVHVVEQLQKLAKVERKLRAGLDREPTTEEVAAESGI 216 Query: 205 PVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLF 264 VD V + R+ S+DTP+ + + D++ D + + + + + + + Sbjct: 217 DVDKVVWLRRVGRDAVSLDTPVDETGDTVVGDLIPDTEVLRAPEVAEFQALAAELREAVG 276 Query: 265 ELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 L ++ +L+ R+GL TL+ V + +GLTRERVRQ++ E L LR + L Sbjct: 277 TLAPRESLILSLRYGLHDGRPRTLQQVAQHVGLTRERVRQLEKESLAHLRAPENRERL 334 >UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 Tax=Propionibacterium acnes RepID=Q6A8Y3_PROAC Length = 312 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 110/289 (38%), Positives = 158/289 (54%), Gaps = 28/289 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRG----------------------------D 87 DA LYL I +PLL A EEV ARR G Sbjct: 17 DAVGLYLDGIARTPLLNAAEEVALARRIEAGVFARAILEGHAETTSDTTTKELHQIAADG 76 Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 + + +NLRLVV +AR+YG + LLDL++EGN GLIRAVEKFD +GF+FSTYAT Sbjct: 77 DEALAHFVRANLRLVVSVARKYGRSQMPLLDLVQEGNTGLIRAVEKFDYAKGFKFSTYAT 136 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WW+RQ I R I Q R +RLP+H+ +++N R L +L EP EIA++L+ + Sbjct: 137 WWVRQAISRGIAQQGRIVRLPVHVAEQVNQVSAARRNLERQLGREPETFEIADELEITEE 196 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V ++R S+D P+ D + +L D++A E GP+D D + + + L +L+ Sbjct: 197 RVIELIRFGRDHVSLDAPVEDDGDTSLGDLIARETSPGPDDIVLDAEDRSRLEGLLDDLD 256 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 + +V+ RR+GL+ A L D+G+ G+T ERVRQI+ L +R+ Sbjct: 257 ERSADVVRRRYGLVDGRQAKLADIGKVWGITAERVRQIERAALASMRQR 305 >UniRef50_Q21UR2 RNA polymerase sigma factor n=5 Tax=Burkholderiales RepID=Q21UR2_RHOFD Length = 350 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 126/296 (42%), Positives = 175/296 (59%), Gaps = 7/296 (2%) Query: 40 LAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNL 99 L L + A DA +YL ++ + L T +EE A RA GD A+R+ MIE NL Sbjct: 55 LPGAGLEALDAAGESGDALTVYLRQVRRTTLFTPQEEFELAGRARAGDFAARQSMIEHNL 114 Query: 100 RLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM 159 RLVV IA+ Y RG+ LLDLIEEGNLGL+ A++KF+PERGFRFSTYATWWIRQ+++RA+M Sbjct: 115 RLVVSIAKAYMGRGVPLLDLIEEGNLGLMHAIDKFEPERGFRFSTYATWWIRQSVDRALM 174 Query: 160 NQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS------AEEIAEQLDKPVDDVSRML 213 Q R +RLP+++V+EL LR R L S E++A L + V+ +L Sbjct: 175 CQGRVVRLPVNVVRELQQVLRARRALESDAAFVVSRPDGIRVEDVAALLGRDPVHVADLL 234 Query: 214 RLNERITSVDTPLGGDSEK-ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQRE 272 L E S+D L E D L DE P TQ ++++ + +W+ L+ +++E Sbjct: 235 GLAEAPRSLDAALDRSGETQTFGDSLVDEITADPSGVTQVHEVERLLEEWVGTLSEREKE 294 Query: 273 VLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALF 328 VL RFGL E TL+ + + LTRERVRQ+Q E L +L+ L +G+ +AL Sbjct: 295 VLEGRFGLHDREPETLDVLSARLDLTRERVRQVQNEALAKLKRYLAHRGITRDALI 350 >UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece RepID=B7KCK0_CYAP7 Length = 295 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 110/283 (38%), Positives = 173/283 (61%), Gaps = 23/283 (8%) Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFA-------------------RRALRGDVASRRRMI 95 LD + YL EIG PLL +EEEV A ++ + ++R+MI Sbjct: 6 LDPVRSYLQEIGRIPLLNSEEEVQLATKVQNMLPLLEKENLTAAEKKIVEQGQIAKRKMI 65 Query: 96 ESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE 155 ++NLRLVV IA+RY RGL+LLDLI+EG+LGLIRAVEKFDP +G++FSTYA WW+RQ I Sbjct: 66 QANLRLVVSIAKRYQRRGLSLLDLIQEGSLGLIRAVEKFDPSKGYKFSTYAYWWVRQAIT 125 Query: 156 RAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRL 215 RA+ ++RTIRLPIH+ + LN ++ REL+ +L +P+ +E+A++++ PV+ + + Sbjct: 126 RALAEKSRTIRLPIHMTENLNQLKKSVRELTGELGRKPNEQEVAQRMEIPVEKLREIRHA 185 Query: 216 NERIT--SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 R S++ L D++ L ++L DE P + ++ I L +L +QRE+ Sbjct: 186 VYRTDAKSLNITL-DDNQTELGEVLPDETSL-PIEFVSQWELVTKINDLLEDLPPRQREI 243 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 + RFGL + + +++GR+ G++ ER RQ+ +R L++ Sbjct: 244 ITLRFGLQTGKRMSYKEIGRQCGISHERARQLLNRAMRTLKQK 286 >UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L491_THERP Length = 334 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 103/288 (35%), Positives = 161/288 (55%), Gaps = 22/288 (7%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG----------------------D 87 Q DA Y E+G LLT +EE+ ++R G Sbjct: 37 IDQAANDAVYRYFREVGGHRLLTHQEEIEYSRAVRAGLAARKRIEAGEDTPELRELVRKG 96 Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 +R ++I NLRLVV IA+RY + L L+DLI+EGN+GL+ AVE++DPE G+RFSTYAT Sbjct: 97 QEAREKLIRHNLRLVVSIAKRYRSSELPLIDLIQEGNIGLMTAVERYDPELGYRFSTYAT 156 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 +WIRQ I RA+ N +RTIR+P+H+ + R ++ + + EE+AE L V Sbjct: 157 FWIRQAIGRAVANLSRTIRVPVHMHDLIAKIRRAEAQIEQQKGRPATNEELAELLGIDVA 216 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 + + R +S+D P+G D E ++ D+L D + + + + +++ I + L +L Sbjct: 217 RIEQARTQIPRTSSLDKPIGEDGESSIGDLLPDPRSDDVVEEALTNAIREQIRRSLEQLT 276 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 ++R VL RFGL G + TL ++ + ++RERVRQ++ E L++LR Sbjct: 277 ERERTVLVMRFGLDGEQPRTLAEIADALKISRERVRQVEKEALQKLRN 324 >UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3QZV6_PHYMT Length = 419 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 113/350 (32%), Positives = 177/350 (50%), Gaps = 33/350 (9%) Query: 7 KVHDLNEDAEFDENGVEVFDE-KALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEI 65 + D ++ +E + DE LV E + + + D ++YL EI Sbjct: 61 DLSDSLDEIILEEEDLVYEDETDTLVLDEFEEKKEEFLNIDKNPIDLKFYDPVKIYLKEI 120 Query: 66 GYSPLLTAEEEVYFARRALRGDVA-------------------------------SRRRM 94 G PLLT EEE R G A ++ R+ Sbjct: 121 GQIPLLTLEEEQEQFRLVYDGREAEAKLESYRKKEIELSEKEISELNDILKISNKAKHRL 180 Query: 95 IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 154 +E+N RLVV IA+RY RGL LDLI+EGN GL+RA+EKF+ ++G + STYAT+WI Q I Sbjct: 181 VEANYRLVVSIAKRYIRRGLEFLDLIQEGNRGLMRAIEKFNIDKGCKLSTYATFWIVQKI 240 Query: 155 ERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR 214 RA+ +Q R IRLP+HIV +N+ +L KL EP+ EE++E ++ + + Sbjct: 241 LRAVADQARIIRLPVHIVDRINIISMAKSKLRLKLHREPTIEELSEFINISEKKLRIIEI 300 Query: 215 LNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL-FELNAKQREV 273 + ++ S++ +G + +L + ++D P D + MK ++ + L L ++ ++ Sbjct: 301 IKKKPISLEARVGEKDDSSLGEFISDPDSLSPHDYMLQEIMKNTLNEILEDTLTDREEKI 360 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 L R+GL + TLE+VG G+TRER+RQI+ + RRLR + L Sbjct: 361 LRMRYGLSNGKVHTLEEVGNVFGVTRERIRQIEAKAFRRLRTPARQNKLK 410 >UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNW0_ACAM1 Length = 299 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 103/278 (37%), Positives = 158/278 (56%), Gaps = 20/278 (7%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRAL------------------RGDVASRRRMIES 97 DA YL +G LLT EEV ++ + ++ RMI Sbjct: 10 DALGAYLTRMGGYSLLTHAEEVSLGQQIQSALNPPQGISQAELDQIQKRGKRAKHRMICG 69 Query: 98 NLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA 157 NLRLVV IA++Y RG+ L+DLI+EG+LGL RAVEKFDP +G+RFSTYA WWIRQ+I RA Sbjct: 70 NLRLVVTIAKKYQKRGMDLIDLIQEGSLGLERAVEKFDPAKGYRFSTYAYWWIRQSITRA 129 Query: 158 IMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNE 217 I Q+ TIR+P+H+ ++LN R RELS L P+ +E+ +L ++ + + L+ + Sbjct: 130 IAMQSHTIRIPVHMTEKLNRIKRVRRELSQTLGRTPTHQEMVAELGITLEQLQKTLQAAQ 189 Query: 218 --RITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLA 275 S++ +G D E L D+L D + P + + D ++ ++ L +LN +R VL Sbjct: 190 ISNPESLNIRVGKDQEMELGDLLEDLQMPSPNEVVEQDFLRNALWSALAQLNDNERTVLI 249 Query: 276 RRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 R+GL +L V +++G++RE VR+++ +L Sbjct: 250 LRYGLEDGRERSLYRVSQQMGISREWVRKLEQTAKSKL 287 >UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea sitchensis RepID=B8LLW6_PICSI Length = 592 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 107/293 (36%), Positives = 165/293 (56%), Gaps = 9/293 (3%) Query: 39 DLAEEELLSQGATQRV-LDATQL-YLGEIGYSPLLTAEEEV------YFARRALRGDVAS 90 +EE LS+G + LD + Y + G P L EV R G S Sbjct: 296 TASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVG-RDS 354 Query: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 150 ++I NLRLV+ +A+ Y NRGL+L DLI+ G++GL+R+ EKFD RGF+FSTYA WWI Sbjct: 355 FDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWI 414 Query: 151 RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVS 210 RQ+I +A+ Q+RTIRLP+HIV+ + R L + +P+ EE+AE + + Sbjct: 415 RQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLR 474 Query: 211 RMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQ 270 + R + TS+D +G D ++ +I+AD E + K+ + + L L A++ Sbjct: 475 HVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTARE 534 Query: 271 REVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 ++V+ R+GL +L +VG L+RERVRQI+++ +R+LR+ +TQ L Sbjct: 535 KQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLK 587 >UniRef50_A8ZPW9 RNA polymerase sigma-70 factor, putative n=10 Tax=Acaryochloris marina MBIC11017 RepID=A8ZPW9_ACAM1 Length = 274 Score = 286 bits (732), Expect = 8e-76, Method: Composition-based stats. Identities = 97/260 (37%), Positives = 166/260 (63%), Gaps = 2/260 (0%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D+ YL EI P+L+ EEE+ AR+ G++ +++R+IE NLRLVV IA+++ NRGL Sbjct: 6 DSLHFYLKEIARYPILSHEEEILLARQVNAGNLRAKQRLIECNLRLVVSIAKKHQNRGLP 65 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 L DLI+EG++GL AV+KFD +G RFSTYA WWIRQ + A+ ++R I LP + + + Sbjct: 66 LQDLIQEGSIGLSNAVDKFDLAQGCRFSTYAYWWIRQGVTAALRAKSRPIYLPQYQWEMI 125 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 + + REL+ +L EPS E+A+ + +SR L L ++++S+D P+G + LL Sbjct: 126 SKIKKHFRELNQQLGREPSLSELAKATNLKPKTISRTLHLFQKVSSLDQPVGHQQKDTLL 185 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D++A E P + + + + + + L+ +++ VL++RFGL + ++ ++G +I Sbjct: 186 DLMAGED--QPTLYLESLQLDEQLSQVMAHLDKREQFVLSQRFGLEDDQPKSMREIGEQI 243 Query: 296 GLTRERVRQIQVEGLRRLRE 315 GL+RE +R I + +++L++ Sbjct: 244 GLSREGIRLILNKIMKKLQK 263 >UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=A5IY54_MYCAP Length = 509 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 178/305 (58%), Gaps = 14/305 (4%) Query: 24 VFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS-PLLTAEEEVYFARR 82 ++ + E + S N ++E L T+ D + Y+ IG LL EEE A Sbjct: 193 ELEDFSAEEIDLSANLSVKKEDLKNKLTE-TNDIVKWYMRWIGKYGKLLQPEEEFELATE 251 Query: 83 ALRGD---VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 +G +R ++I+ NLRLV+ A++Y NRGL+ +DLI EGN G+I+AV+K++ +G Sbjct: 252 MDKGGFKGKRARDKLIKRNLRLVINNAKKYKNRGLSFIDLISEGNSGIIKAVQKYNVNKG 311 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 F+FSTYATWWIRQ I RA+ +Q+RT+R+P+H+V+ +N + REL + +P+ EEIA Sbjct: 312 FKFSTYATWWIRQAITRAVADQSRTVRVPVHMVETINKITKIERELQQENGVDPTDEEIA 371 Query: 200 EQLD--KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257 ++ + V + ++N S+D +G +++ + D + DE P D +++ + Sbjct: 372 QRYGNDFTAEKVRHIRKINIDPISLDKQIGKENDSSFSDFVKDESVVNPVDYASHEELVE 431 Query: 258 SIVKWL-FELNAKQREVLARRFGLL------GYEAATLEDVGREIGLTRERVRQIQVEGL 310 ++ L L+A + E++ +R+G+ Y+ +LE++ E +++ER+RQI+ + L Sbjct: 432 TLNAILKDTLDADEYELICKRYGVGFDNNGEKYKVFSLEELALERNVSKERIRQIENKIL 491 Query: 311 RRLRE 315 R+L+ Sbjct: 492 RKLKS 496 >UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML80_9BACT Length = 414 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 144/229 (62%), Gaps = 1/229 (0%) Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 ++ +++ NLRLVV IA+R+ RG+ LDLI+EGN+GL+RA E+F +GF+FSTYAT Sbjct: 177 ERAKEGLVQHNLRLVVDIAKRFTGRGMGFLDLIQEGNIGLMRAAERFQYRKGFKFSTYAT 236 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WW+RQ I RA+ +Q+RTIR+P+H + ++ + L+ KL EPS EEIA L + Sbjct: 237 WWVRQGILRAVADQSRTIRVPVHTTEAWQRMIKISHRLAQKLGREPSNEEIALALAVKPE 296 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V + S D P D E L D L D+ + P++ Q++ M+ + + L L Sbjct: 297 RVQHTTQAFLEPISFDQP-NADGETFLGDCLPDDHASPPDEHLQEEQMRSQLHRLLRVLT 355 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 ++ +V+ RFG+ ++ TLE+VG+ + +TRER+RQI+V +++LRE Sbjct: 356 PREEQVIRLRFGIGNGQSRTLEEVGKLLNVTRERIRQIEVLAMKKLREP 404 >UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WQH6_CYAA5 Length = 297 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 119/298 (39%), Positives = 173/298 (58%), Gaps = 26/298 (8%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFAR-------------------RALRGDVASR 91 T++ +D + YL IG +PLL+ EE+ A + + +R Sbjct: 3 TKKKVDTVRHYLQSIGKTPLLSGPEEIKLAEEIQAMLPLLEKEALSKEEEKIVAKGQRAR 62 Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 151 +MI++NLRLVV IA++Y N GL+LLDLI+EG+LGLIR VEKFDP RG++FSTYA WWIR Sbjct: 63 DKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPSRGYKFSTYAYWWIR 122 Query: 152 QTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSR 211 Q I RAI Q+RTIRLPIHI + LN Y ++ REL+ KL +P+ +EIAE +D VD + Sbjct: 123 QGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQQEIAENMDISVDKLRF 182 Query: 212 MLRLNERI--TSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + + + S++ + ++ L +L DE P D + + I + L L+ + Sbjct: 183 LQQAAFKTKSRSLNIVI-DENHTELGQLLPDEDSVSPSDFVKQQEKISQINRMLENLSPR 241 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEAL 327 Q+EV+ RFGL + + + +G + G++ ER RQI LR LR+ Q IE L Sbjct: 242 QKEVIILRFGLRDGKQLSYKAIGEQCGISHERARQIYSRALRILRK----QSSKIERL 295 >UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 Tax=Actinomycetales RepID=HRDD_STRVF Length = 332 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 107/299 (35%), Positives = 155/299 (51%), Gaps = 28/299 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRG----------------------------D 87 D +YL EI +PLL A +EV ++ G Sbjct: 34 DLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFAQQVLDGEEESRTDATREELQALVDAG 93 Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 ++ I SNLRLVV +ARRY GL LLDLI+EGN GL+RAVEKFD +GF+FSTYAT Sbjct: 94 ERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYAT 153 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I R+I +Q+RTIRLP+H+V+EL R RE + + +P E+A +L + Sbjct: 154 WWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEVAAELGSTPE 213 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V +L S++ + E D+L D PE + + + + L+ Sbjct: 214 RVIDVLDWARDPVSLNMAVDDAGETQFGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLD 273 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEA 326 + ++ R+G+ TL +VG+E GLTRER+RQI+ L L+++ + G + A Sbjct: 274 QRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDTGFDAAA 332 >UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobia RepID=B2KBW8_ELUMP Length = 571 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 149/233 (63%) Query: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 150 + ++I++NLRLVV IA+++ N L L DLI+EG LGL++AVEKF+ +RGF+FSTYATWWI Sbjct: 334 KLKLIKANLRLVVSIAKKHVNSNLELSDLIQEGGLGLMKAVEKFEYKRGFKFSTYATWWI 393 Query: 151 RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVS 210 RQ+I RAI +Q TIR+P+H+ + ++ + + + EPS E+ ++ L ++ V Sbjct: 394 RQSINRAIADQANTIRIPVHMKELVSKLTKVTNKFRQEHGREPSLEDYSKSLRLSMEKVK 453 Query: 211 RMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQ 270 +L++ + S+ TP+G D + L D + D+ P T D KQ + + L L+ ++ Sbjct: 454 GVLKIMQDPISLSTPVGEDEDSNLEDFIEDKAGANPTVTASDFLRKQEVSEVLNTLSERE 513 Query: 271 REVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 +++ RFG+ TLE+VG+ +TRERVRQI+ + +R+LR +T+ L Sbjct: 514 AKIIRLRFGIDSGYPRTLEEVGKMFNVTRERVRQIEAKAIRKLRHPSRTKMLK 566 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 1 MSQNTLKVHDLNEDAE-FDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQ 59 ++ +++ D++ ++ G++V D K ++ + EE + A + ++ + Sbjct: 31 LTSSSMSAEDIDGLMGTLEDLGIQVVDRKKYKSVAMAEKEAYTEEFM---ANPDISNSIR 87 Query: 60 LYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIES 97 +YL E+G PLL+ +EE+ AR + R+ ++ES Sbjct: 88 MYLSEMGKVPLLSRDEEITLARNVREREKELRKLVLES 125 >UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SG50_RHOSR Length = 520 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 108/319 (33%), Positives = 172/319 (53%), Gaps = 34/319 (10%) Query: 28 KALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG- 86 K + E D D E + +D+ + Y I LL + +E A R G Sbjct: 191 KTALPPELDDGDPGAEAATDVDEYE-TVDSIRAYSKSIKKRSLLVSGDESELAERIEAGL 249 Query: 87 ------------------------------DVASRRRMIESNLRLVVKIARRYGNRGLAL 116 ++RR +E+NLRLVV IARRY RGL L Sbjct: 250 YAAYLLKEAEDAGEKLSDQRHRDLHRVCRDGQHAKRRFLEANLRLVVSIARRYQGRGLDL 309 Query: 117 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELN 176 LDL++EGNLGLIRAVEKFD + GF+FSTYATWWIRQ I RA+ +Q+R IR+P+H+V++++ Sbjct: 310 LDLVQEGNLGLIRAVEKFDYKTGFKFSTYATWWIRQAITRALADQSRVIRIPVHMVEQID 369 Query: 177 VYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLD 236 + L+ + EP+ E+A LD ++ + + + ++R+ S+D L ++E LD Sbjct: 370 QLGKERARLTKETGREPTPSELATALDTTIEHIGDLEKYDQRVLSLDV-LTDNAEHDGLD 428 Query: 237 ILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIG 296 D+ E+ + +++ L L+ + +V+ R+GL G + TL+++G+ G Sbjct: 429 F-EDDLAVVAEEVAERRRFYETLESVLSPLSERDAQVIRLRYGLTGSDPYTLDEIGKIYG 487 Query: 297 LTRERVRQIQVEGLRRLRE 315 +TRER+RQI+ + L+ ++E Sbjct: 488 VTRERIRQIESKLLKAMKE 506 >UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESS1_SORC5 Length = 715 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 155/289 (53%), Gaps = 16/289 (5%) Query: 32 EQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASR 91 E + D+ EE + + + YL + R+ + ++ Sbjct: 441 EPDFEDDVSDPEETRPTRPRLPMSGSYRRYLDRVE---------------RSFQAQHDAK 485 Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 151 R +++NLRLVV IARRY L L+DLI+EGN+GL++AVE+FD RG+RFSTYA+WWIR Sbjct: 486 NRFVKANLRLVVSIARRYNRGRLPLIDLIQEGNIGLMKAVERFDHSRGYRFSTYASWWIR 545 Query: 152 QTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSR 211 I RA+ ++ R +R+P+H++ N R + + + HEP+ EE+ ++ P + + + Sbjct: 546 HAISRALADKGRAVRIPVHMLDTYNRVARATQAIIARTGHEPTIEELEKETGVPREKLDK 605 Query: 212 MLRL-NERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQ 270 + E S+D P+G + + +D L +E P D + + + L L + Sbjct: 606 VKDFYAETPFSLDRPVGDEDGRKFIDFLQEENALSPFDHLANRKWSDEVRRLLTTLTPIE 665 Query: 271 REVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 ++ RFGL + TL+++G + L+RER+RQ+Q + L ++R+ ++ Sbjct: 666 SRIIRWRFGLDDEDELTLKEIGDKYNLSRERIRQLQEQALGKIRKQMRD 714 >UniRef50_B1ZRN1 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZRN1_OPITP Length = 347 Score = 284 bits (727), Expect = 4e-75, Method: Composition-based stats. Identities = 106/278 (38%), Positives = 151/278 (54%), Gaps = 1/278 (0%) Query: 40 LAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNL 99 L+ A + Q+YL +IG +PLLTA EE A R RGD +R MI +NL Sbjct: 17 LSRRSSARDAAESDGRSSLQIYLQDIGQTPLLTAREEFALAERVRRGDAGARDHMIRANL 76 Query: 100 RLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM 159 RLVV+IA+ Y GL L DLI EGN+GLI AV++FDP G + STYA WWIRQ I RA Sbjct: 77 RLVVRIAKDYAQYGLPLADLISEGNVGLIHAVDRFDPRIGGKLSTYAAWWIRQAIRRAFA 136 Query: 160 NQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERI 219 + R IRLP+H++ + R LS + E + +E+A +L PV+ ++ + Sbjct: 137 HHARAIRLPVHMLDRIARLRRAQASLSEQFGREATTDELAAELQAPVEKIALWKSAGDAP 196 Query: 220 TSVDTPLGGDSEK-ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRF 278 S+D +G SE L + + DE+ +D + + + L+ ++ +L RF Sbjct: 197 FSLDAAVGTGSESRRLSETIRDERAPTAFTQLRDATTARDLRAIIATLDVREATILRLRF 256 Query: 279 GLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 GL G E TL V G+TRERVRQ++ L+ +R Sbjct: 257 GLDGDEPQTLHAVSLRFGITRERVRQLERRALQNVRNA 294 >UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMH4_MYCA5 Length = 513 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 95/318 (29%), Positives = 173/318 (54%), Gaps = 18/318 (5%) Query: 24 VFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS-PLLTAEEEVYFARR 82 + E E + D ++ E+ + D + Y+ IG LLT ++E A + Sbjct: 185 LLKEYDTYEIKLEDQHISREDNMLSNKLTETNDIVKWYMRWIGKYGKLLTPKKERELAIK 244 Query: 83 ALRGD--------VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 +R +++ NLRLV+ A+RY NRGL+ +DLI EGN G+++AV K+ Sbjct: 245 MEEALANNNYYRYKRARDMLVKRNLRLVINNAKRYKNRGLSFIDLISEGNSGIMKAVSKY 304 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D ++GF+FSTYATWWIRQ I RA+ +Q RTIR+P+H+V+ +N L+ REL + + P+ Sbjct: 305 DYKKGFKFSTYATWWIRQAITRAVADQARTIRVPVHMVETINKILKIERELQQEFGYPPT 364 Query: 195 AEEIAEQLD--KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQD 252 EEIA++ + V + ++N S+D +G + + D + DE P D Sbjct: 365 DEEIAKKFGGDFTAEKVRYIRKINIDPISLDKNIGKEENSSFSDFVKDESVISPNDFASQ 424 Query: 253 DDMKQSIVKWL-FELNAKQREVLARRFGLLG------YEAATLEDVGREIGLTRERVRQI 305 ++ + + + L+ + + ++ +R+G+ Y TL+++ +E+ +++E+VR++ Sbjct: 425 QELAVILNEMINSSLDPEDQALIRKRYGVGQDPSGVPYRPHTLDELAKELNISKEKVRKL 484 Query: 306 QVEGLRRLREILQTQGLN 323 + + LR+L+ + + L Sbjct: 485 EAKILRKLKHPQKRKKLK 502 >UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1P1_HERA2 Length = 303 Score = 282 bits (723), Expect = 9e-75, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 156/302 (51%), Gaps = 27/302 (8%) Query: 45 LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYF------ARRAL-------------- 84 +L + D Q YL EI +PLL AEEE AR+A Sbjct: 2 MLHASNEPALDDGLQRYLNEIAETPLLAAEEEQKLTQIVHVARQAQPTPACRIERCPSCA 61 Query: 85 -------RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137 + + +++ +NLRLVV IA+RY GL DLI+EGN+GL+ A+E+FD Sbjct: 62 LFEQCVTKLKEPAHEQLVRANLRLVVSIAKRYRGFGLPFQDLIQEGNIGLMNAIERFDAT 121 Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197 +G RFSTYATWWIRQ I R++ NQ R IRLP+H + L R +L L EPSA E Sbjct: 122 KGVRFSTYATWWIRQAITRSLANQGRLIRLPVHRWELLIKVRRIETKLLQALGREPSANE 181 Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257 I+ L P + + +L + + S+ TP +++ L D L DE + Q Sbjct: 182 ISTALGVPEEKICDLLSIAQVPISLATPKNEETDMLLGDSLPDEDWEDELECLLTSIDAQ 241 Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 L +L+ +++EVL R+GL ++ +L +VG +G TR+R++QI+ L+ LR L Sbjct: 242 YTRAMLNQLSEQEQEVLTLRYGLKDGKSRSLSEVGAVVGRTRQRIQQIEAGALQVLRTQL 301 Query: 318 QT 319 Sbjct: 302 SQ 303 >UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma mobile RepID=Q6KI01_MYCMO Length = 488 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 96/327 (29%), Positives = 180/327 (55%), Gaps = 16/327 (4%) Query: 13 EDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVL-DATQLYLGEIGYS-PL 70 ++ DE ++ DE +E + A+ ++ G + V+ + + Y+ +G + Sbjct: 155 DEISDDEIVLDDLDEFIDLEYSANAKKGAKSKVKKSGNREIVIREIVKWYMSWVGKHGKV 214 Query: 71 LTAEEEVYFARRAL-----RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNL 125 L EEE+ ++++ R + +I NLRLV+ A++Y NRGL+ +DLI EGN Sbjct: 215 LDKEEEIKYSKQIEEDRNGRKGKKAFNALIHHNLRLVINNAKKYKNRGLSFIDLISEGNA 274 Query: 126 GLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAREL 185 GLI+A K+D RGF+FSTYATWW+RQ I RA+ +Q R +R+P+H+V+ +N ++ REL Sbjct: 275 GLIKAATKYDYRRGFKFSTYATWWVRQAITRAVADQARIVRVPVHMVETINKIIKIEREL 334 Query: 186 SHKLDHEPSAEEIAEQLD--KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKE 243 +L P+ ++IAE+ + V + ++N S+D +G D + + D + DE Sbjct: 335 HQELGVPPTDKQIAEKYGNNFTAEKVQYIRKINIDPISLDKSIGKDDDSSFSDFVKDESV 394 Query: 244 NGPEDTTQDDDMKQSIVKWLF-ELNAKQREVLARRFGLLGYEA------ATLEDVGREIG 296 P + +++ + L L+ +R+++ +RFG+ + +LE++ E+ Sbjct: 395 VSPLEFASQNELSGILTDILEKHLDEAERDLIKKRFGIGVDKDGNRISSHSLEELAAELQ 454 Query: 297 LTRERVRQIQVEGLRRLREILQTQGLN 323 +++E+VR ++ + LR+L+ + + L Sbjct: 455 ISKEKVRSLESKILRKLKHPQKRKKLK 481 >UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteria RepID=B8HRG7_CYAP4 Length = 455 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 107/241 (44%), Positives = 160/241 (66%), Gaps = 1/241 (0%) Query: 82 RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 + + V ++ MI++NLRLVV +A++Y NRGL LLDLI+EG LGL RAVEKFDP +G+R Sbjct: 208 QIQKEGVRAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYR 267 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 FSTYA WWIRQ I RAI Q+RTIRLP+HI ++LN + R++S + H PS E+IA + Sbjct: 268 FSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTPSIEDIATE 327 Query: 202 LDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 L+ V V +L R S++T +G D + L D+L + PE+ + + + + K Sbjct: 328 LEMTVPQVRELLVRVPRSVSLETKVGKDKDTELGDLLETDD-LSPEEMMMRESLHRELEK 386 Query: 262 WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 L +L +++R+V++ RFGL A +L D+GR + L+RERVRQI+ + L++LR+ + Sbjct: 387 LLADLTSRERDVISMRFGLGDGHAYSLADIGRALDLSRERVRQIEAKALQKLRQPKRRNR 446 Query: 322 L 322 + Sbjct: 447 V 447 Score = 45.5 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%) Query: 14 DAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTA 73 D + NG+E + +L+E P ++ EE + G QR D +LYL EIG LL Sbjct: 60 DLLVEANGLEANGDGSLLEDWPEED--VEEAVQLAGRGQRTTDLVRLYLQEIGRVRLLGR 117 Query: 74 EEEVYFARRALRGDVASRRRMIE 96 +EEV A++ R R++E Sbjct: 118 DEEVSEAQKVQR-----YMRLVE 135 >UniRef50_A7MZX8 RNA polymerase sigma factor n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MZX8_VIBHB Length = 287 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 121/279 (43%), Positives = 179/279 (64%), Gaps = 1/279 (0%) Query: 41 AEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR 100 + + + L A +Y +IG LL+A++E +ARRA GD +R RMI SNLR Sbjct: 1 MDSKKIKINNNSSELTAELIYFNDIGKYALLSADDEREYARRAKMGDADARTRMINSNLR 60 Query: 101 LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 LVV IA+RY RGL LDLI EGN+GL+RAVEKFDPE+GFRFSTYAT WIRQ+IER +MN Sbjct: 61 LVVNIAKRYKGRGLTFLDLISEGNIGLMRAVEKFDPEKGFRFSTYATHWIRQSIERELMN 120 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERIT 220 Q RT+RLP+HI KEL Y++ +ELS K + +IA+ L+ PV V + L ++ Sbjct: 121 QARTVRLPVHINKELKRYVKATKELSQKTQ-TITPRDIADHLEIPVSSVLKHLEFDKSTI 179 Query: 221 SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL 280 S+D+ + K L + +A + PE ++D+ +++W+ EL + +L RR+GL Sbjct: 180 SLDSYQDKEEAKPLAETMACHRLRCPELELEEDNAFLMLLQWIEELEPDLKLILTRRYGL 239 Query: 281 LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 G +L+ VG E+G +RER+R +Q++G+++L+ + + Sbjct: 240 DGNTPTSLDTVGTELGYSRERIRHLQMQGIKKLQNLAKN 278 >UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HIZ1_ARTCA Length = 951 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 106/306 (34%), Positives = 151/306 (49%), Gaps = 33/306 (10%) Query: 34 EPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG------- 86 E D+D +E +L + D +LYL + LLT EE G Sbjct: 449 ERDDSDWSEAPVLE----GSIGDDVRLYLEQASSFDLLTHEEVTDLGMAIEAGLYAEHLL 504 Query: 87 --------------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLG 126 + +++ NLRLVV IA+R+ RG+ LDLI+EGN G Sbjct: 505 GTARPEGRRAILELESVASAGRDAVLKLVSCNLRLVVSIAKRHTGRGMDFLDLIQEGNAG 564 Query: 127 LIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELS 186 L RAV+KFD +GF+FSTYATWWIRQ I R I +Q+RTIRLP+H +++ R Sbjct: 565 LYRAVQKFDYTKGFKFSTYATWWIRQAITRGIADQSRTIRLPVHFHEQVVSVFIAERNFL 624 Query: 187 HKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVD--TPLGGDSEKALLDILADEKEN 244 + +AEEIAE K VD+++ + R S+D P G + L + L D E Sbjct: 625 QSEGRDGTAEEIAEACGKTVDEINAVRRHRTPPASLDWEVPNGKGGVELLGETLYDPDEP 684 Query: 245 GPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQ 304 D ++ ++ L L+ ++ VLA RFGL E TL+ +G G+TRER+RQ Sbjct: 685 TAYDAAVLAQLQSAVHGALDRLSEREAGVLAYRFGLATGEQLTLDQIGTIYGVTRERIRQ 744 Query: 305 IQVEGL 310 I+ + Sbjct: 745 IEAKAF 750 >UniRef50_B4U904 RNA polymerase sigma factor n=5 Tax=Aquificales RepID=B4U904_HYDS0 Length = 311 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 89/305 (29%), Positives = 160/305 (52%), Gaps = 32/305 (10%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG 110 + + Y+ + LLT +EE FA+RA GD + + ++E+NLR VV +A++Y Sbjct: 3 SDSEQEIINQYMKRVSSVKLLTPQEEKEFAKRAKAGDKEALKALVEANLRFVVSVAKQYM 62 Query: 111 NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH 170 G+ L +LI GNLGL+ A +FDP++ +F +YA WW+RQ I +A+ QT +R+P+ Sbjct: 63 GYGIPLSELIAAGNLGLLEAATRFDPDKNVKFISYAVWWVRQAIMQALSQQTGAVRIPVK 122 Query: 171 IVKELNVYLRTARELSHKLDHEPSAEEIAEQLD--------------------------- 203 ++ EL +L+ EP+ +EIA+ ++ Sbjct: 123 HSHLISAVGLAYNELLKELEREPTYKEIADYINKKNIIREFKKETGFAPTEEELEQSMTQ 182 Query: 204 -----KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQS 258 +DV + L++ + S+DTP+G + + +D+L+ + E+ D +++ Sbjct: 183 EHKYTVTEEDVKKCLQICKTPLSLDTPVGDNPDTLFVDLLSISDTDEIEEGVIKDVLEKE 242 Query: 259 IVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318 + + +L K+R+VL R+GL G E TL ++G +G++RERVRQ++ +++LR Sbjct: 243 LHDIISKLPEKERKVLELRYGLNGNEPLTLREIGDALGISRERVRQLETRAIKKLRSFAL 302 Query: 319 TQGLN 323 + L Sbjct: 303 KRHLK 307 >UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily n=8 Tax=Planctomycetaceae RepID=D2R4L7_9PLAN Length = 320 Score = 280 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 106/282 (37%), Positives = 167/282 (59%) Query: 38 NDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIES 97 + + ++ + + YL EI + LL+A +E A GDV +R RM+ + Sbjct: 23 STSGKARGVAPRKAISLQTPLESYLREINETALLSARDERELAAAIADGDVRARDRMVRA 82 Query: 98 NLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA 157 NLRLVV IAR Y +GL+L DLIEEGNLGL+RAVE FDP G RFSTYA++WI+Q+I+RA Sbjct: 83 NLRLVVNIARGYTGKGLSLQDLIEEGNLGLLRAVEGFDPAVGTRFSTYASYWIKQSIKRA 142 Query: 158 IMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNE 217 ++N +TIR+P ++V+ L+ + R L+ +L P+ EE+A L + + + Sbjct: 143 LINSAKTIRIPAYMVELLSKWRRATARLTEELGRGPTPEEVARVLGLAKKKLPIIKKAIR 202 Query: 218 RITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARR 277 S ++ +L +I+ DE+ PED + D+ + +++ L +++++ VL R Sbjct: 203 IYNSTPQTDQSEAGWSLGEIVMDERLKNPEDELVEQDVLKHVMEMLHTMDSREATVLRMR 262 Query: 278 FGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 FGL TL+++G +GLTRERVRQI+ E L +L + L+ Sbjct: 263 FGLGDTTPHTLKEIGESLGLTRERVRQIETEALGKLADGLKD 304 >UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G031_9DELT Length = 431 Score = 280 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 151/246 (61%), Gaps = 1/246 (0%) Query: 75 EEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 E V RR+ R +++ + +++NLRLVV IARR+ + + L DLI+EGN+GL++AV++F Sbjct: 182 EYVANVRRSSRKLRSAKNKFVKANLRLVVSIARRFNHGRMPLQDLIQEGNIGLMKAVDRF 241 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D +GFRFSTY +WWIR I RAI ++ R +RLP+H++ + + REL KL EP+ Sbjct: 242 DYRKGFRFSTYGSWWIRHAISRAIADKGRQVRLPVHMIDAYHKVNKARRELEAKLGREPT 301 Query: 195 AEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253 EE+A+ + + RM L + S+D P+ + + D L DE P + + D Sbjct: 302 REELAQHTGIALAKIERMGTMLVDNPISLDKPVSDADGRKMGDFLEDENAEDPGEGLEAD 361 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 + + + + + +L + +++ +RFGL+ E TL+++G + L+RER+RQ+Q + L ++ Sbjct: 362 ALNEQVKRLVSKLRPIEADIIRKRFGLIDDEELTLKEIGGQYSLSRERIRQLQEQALGKI 421 Query: 314 REILQT 319 R L+ Sbjct: 422 RRELKR 427 >UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLA1_SYNFM Length = 433 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 98/244 (40%), Positives = 158/244 (64%), Gaps = 1/244 (0%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 +R + ++++ M+++NLRLV+ IA+RY RG++ DLI+EGNLGL++AV +FD +G Sbjct: 187 SRAIMLAIDSAKQEMVKANLRLVLSIAKRYRGRGMSFDDLIQEGNLGLLKAVGRFDHTKG 246 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 RFSTYATWW+RQ+I R I ++TRTIRLP+H ++ N++ + EL +L EPS +EIA Sbjct: 247 NRFSTYATWWVRQSIIRGIYDKTRTIRLPVHFIELKNLFFKVFYELLKELGREPSPQEIA 306 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 E+ P+D V +L L + S++TP+G D ++ L D + DE+ P + D ++ + Sbjct: 307 ERAKLPLDKVQMVLTLAAQPISLETPIGEDEQR-LGDFIEDERAASPMEECSDRELAEIT 365 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 L L ++ ++L RFG+ G A TLE +G+ +++ER+RQI+ + LR+LR + Sbjct: 366 RSLLSSLQPREEKILRLRFGIDGQPAETLEKIGKTFKVSKERIRQIEKKALRKLRNPNRQ 425 Query: 320 QGLN 323 L Sbjct: 426 SCLK 429 >UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacterium RepID=C6JJT6_FUSVA Length = 275 Score = 279 bits (715), Expect = 7e-74, Method: Composition-based stats. Identities = 103/261 (39%), Positives = 158/261 (60%), Gaps = 2/261 (0%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D LYL +I +L +EE+ +A GD S+ ++I SNLRLVV IA+ Y N+GL+ Sbjct: 7 DLISLYLADIRKYKILDKDEELNLLIKAKAGDEESKNQLILSNLRLVVNIAKGYINKGLS 66 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 +DLI EGNLGLI A+EKFD +GFRFSTYA WWI+Q+I +A++ + R IR+P + L Sbjct: 67 FIDLISEGNLGLIYAIEKFDITKGFRFSTYAVWWIKQSISKAVIVKGREIRIPSYKYDLL 126 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 N R + P EEIA +L+ VD + ++ + S+ T +G D L Sbjct: 127 NKVNRYVMSRLKDEGNYPPVEEIAAELNIDVDKIQDIIMDFQDPMSLSTQIGDD--IYLE 184 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D LA +++ E+ ++ ++ + + +L +++E+L R+GL GYE TLE++G + Sbjct: 185 DTLAQQEDFSMEEEIFNEMGRKQVRDMVNQLEEREKEILKLRYGLDGYEIHTLEEIGNTL 244 Query: 296 GLTRERVRQIQVEGLRRLREI 316 +TRERVRQI+ + L++LR Sbjct: 245 NITRERVRQIEKKTLQKLRSK 265 >UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomycetales RepID=D1A523_THECD Length = 360 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 113/288 (39%), Positives = 155/288 (53%), Gaps = 27/288 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRG---------------------------DV 88 D YL IG + LL A+EEV A+ G V Sbjct: 17 DLVGAYLDRIGRTHLLDAQEEVDLAKAIEGGLYAEHLLEEDRVPPGVTRQELEELVAAGV 76 Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 +++R +E+NLRLVV IAR+Y L L+DLI+EGNLGL+RAVEKFD RGF+FSTYATW Sbjct: 77 RAKQRFVEANLRLVVSIARKYPTDALPLIDLIQEGNLGLMRAVEKFDYRRGFKFSTYATW 136 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ+I R + + RTIRLP+H+ +EL+ R R+L +L EP+ EE+AE L VD Sbjct: 137 WIRQSIGRGLSHTARTIRLPVHVEEELSRLRRAERQLGRELGREPTREELAEALGAAVDH 196 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 V +LR S+D + E + D+L D + PE D + + L L Sbjct: 197 VDELLRWRRDPASLDAAVDDAGETPMGDLLEDPEGVSPEAEVLALDDIAGLARLLDRLPE 256 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 ++ +L RFG+ + + +G GL+ RVRQI LRRLR++ Sbjct: 257 RESAILRARFGIEDGQPLSYAQIGARYGLSHNRVRQITDRSLRRLRQL 304 >UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD77_THET1 Length = 596 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 148/241 (61%), Gaps = 2/241 (0%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 + GD+ +R+R+IE+NLRLVV IA++Y RG+ LLDLI+EGN+GLI+AVEKF ++G+ Sbjct: 247 KWIAEGDI-ARKRLIEANLRLVVSIAKKYTGRGITLLDLIQEGNIGLIKAVEKFRHQKGY 305 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYATWWIRQ I RAI +Q RTIR+P+H+ + +N + R L+ +L EP+ +EIA Sbjct: 306 KFSTYATWWIRQAITRAIADQARTIRIPVHMGEAINKIAQARRRLTQELGREPTEQEIAN 365 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 L PV+ + + ++++ S++ P+G + + +L D + D K P D ++ I Sbjct: 366 YLGIPVEKIREVQKISQEPISLENPVGEEEDTSLGDFIQDHKAPAPMDAASQSLLRDQID 425 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 + L L+ ++R VL RFGL E +V + ++ +V Q + L + L + Sbjct: 426 QVLKHLSERERGVLLMRFGLDC-EPRPYREVAHILAVSPNQVMQAESRVLDMVAARLSPE 484 Query: 321 G 321 Sbjct: 485 D 485 Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 17/161 (10%) Query: 170 HIVKELNVYLRTARELSHKLDHEPSA-EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG 228 ++K L+ R + LD EP E+A L + V + + + L Sbjct: 426 QVLKHLSERERGVLLMRFGLDCEPRPYREVAHILAVSPNQVMQAESRVLDMVA--ARLSP 483 Query: 229 DSEKALLDILAD-EKENGPEDTT-------------QDDDMKQSIVKWLFELNAKQREVL 274 + + LLD ++ E++ D +++++ + + A +R+++ Sbjct: 484 EDYQMLLDRFGHLDRSPMSEESFRLKYKLTQTQLREIDQKLREALASVMLHVPAPERDMM 543 Query: 275 ARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 RFGL + TLE+VGR G+TRER+RQI+ + LR+LR Sbjct: 544 RFRFGLDIGQPRTLEEVGRAFGVTRERIRQIESKALRKLRR 584 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%) Query: 37 DNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGD 87 + L + E L + D +LYL EIG LL+ E+E+ AR+ RG+ Sbjct: 54 EESLQDPEDLEDLEGTNLDDPIRLYLREIGKENLLSQEQEIELARKNERGN 104 >UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, scaffold_24.assembly12x (Fragment) n=3 Tax=Magnoliophyta RepID=D1J322_VITVI Length = 575 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 141/242 (58%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 RR + + +MI+SN+RLV+ IA+ Y G+ + DL++EG GL+R EKFD +GF Sbjct: 328 RRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGF 387 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYA WWI+Q + +++ +Q+RTIRLP H+V+ ++L + P+ EE+AE Sbjct: 388 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 447 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 + ++ +L + S+D +G + +++AD E+ M++ + Sbjct: 448 ATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLE 507 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 K L LN ++++V+ R+GL TL+++G +G++RER+RQI+ R+L+ +T+ Sbjct: 508 KVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTK 567 Query: 321 GL 322 L Sbjct: 568 HL 569 >UniRef50_Q4A5V6 RNA polymerase sigma factor n=3 Tax=Mycoplasma RepID=Q4A5V6_MYCS5 Length = 798 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 95/305 (31%), Positives = 167/305 (54%), Gaps = 22/305 (7%) Query: 31 VEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS-PLLTAEEEVYFARRALRGD-- 87 E + ++ +++ LS T+ D + Y+ IG LLT +EE A +G Sbjct: 476 DEIDLQIDEENKKQDLSNKLTE-TTDIVKWYMRWIGKYGKLLTPQEEKDLAEEMDKGGSR 534 Query: 88 -VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 146 +R +I+ NLRLVV A++Y NRGL+ +DL+ EGN GL++A +KFD ++GF+FSTYA Sbjct: 535 GKRARDLIIKRNLRLVVNAAKKYKNRGLSFIDLVSEGNAGLLKAAQKFDIKKGFKFSTYA 594 Query: 147 TWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPV 206 TWWIRQ+I RA+ +Q R IR+P+H+V+ +N + RE+ + E EEIA +L Sbjct: 595 TWWIRQSISRAVADQARIIRVPVHMVETINKIYKIEREIQQENGGEIIDEEIAARLGGKS 654 Query: 207 DD-----VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 + + ++N S+D +G +++ D + DE P + +++ I Sbjct: 655 KKYDASYIRYIRKINTSPISLDKQVGKENDSFFGDFVKDESIISPVEFADKEELITKINY 714 Query: 262 WLFE-LNAKQREVLARRFGLLGY------EAATLEDVGREI-----GLTRERVRQIQVEG 309 ++ + L+ + +++ R G+ +ATL+++ ++ +++ERVRQI + Sbjct: 715 YVEKLLSEAEADLIKRYHGIGYDAKGNPVRSATLDEISKDFRGEGKKISKERVRQIITKI 774 Query: 310 LRRLR 314 ++LR Sbjct: 775 YKKLR 779 >UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroidetes/Chlorobi group RepID=Q2S172_SALRD Length = 313 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 105/271 (38%), Positives = 160/271 (59%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGN 111 R YL EIG LL EEEV ARR GD + ++ +NLR VV +A++Y Sbjct: 38 SREQRMLDQYLQEIGKIDLLEPEEEVELARRIEDGDEEALHKLCRANLRFVVSVAKKYQG 97 Query: 112 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 171 +GL+L DLI EGN GLI+A ++FD RGF+F +YA WWIRQ I +A+ Q+R +RLP++ Sbjct: 98 QGLSLADLINEGNYGLIKAAKRFDETRGFKFISYAVWWIRQAILQALAEQSRVVRLPLNR 157 Query: 172 VKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSE 231 + ++ + + L LD +P+ EE+AE+L+ V V ++ R S+D P + + Sbjct: 158 IGTISKIRKASARLQQDLDRKPNIEELAEELEIDVQKVREAMKHTSRHLSMDAPFNEEDD 217 Query: 232 KALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDV 291 +LLD+L DE + P++ + +K I + L L+ ++ E+ FG+ TLE++ Sbjct: 218 NSLLDVLPDEDNDSPDEEMLSESVKIDIERALSALHDREAEITRLYFGIGREHPLTLEEI 277 Query: 292 GREIGLTRERVRQIQVEGLRRLREILQTQGL 322 G+ LTRERVRQI+ + LR+LR+ Q L Sbjct: 278 GKRFDLTRERVRQIKEKALRKLRQRHSKQDL 308 >UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobacteria RepID=RPSC_ANASP Length = 416 Score = 277 bits (708), Expect = 6e-73, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 156/246 (63%), Gaps = 4/246 (1%) Query: 75 EEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 EE+ + + S+ MI++NLRLVV +A++Y NRGL LLDL++EG LGL RAVEKF Sbjct: 165 EELE---KMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKF 221 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 DP +G+RFSTYA WWIRQ I RAI +RTIRLP+HI ++LN + R+++ + P+ Sbjct: 222 DPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPT 281 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 E++A +LD V +L R S++T +G D + L ++L + PE+ + Sbjct: 282 LEDLAIELDMTPTQVREVLLRVPRSVSLETKVGKDKDTELGELLETDGV-TPEEMLMRES 340 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +++ + L +L +++R+V+ RFGL +L ++GR + L+RERVRQI+ + L++LR Sbjct: 341 LQRDLQHLLADLTSRERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLR 400 Query: 315 EILQTQ 320 + + Sbjct: 401 QPKRRN 406 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%) Query: 11 LNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPL 70 L+ D D++ + V E + + A+ A +R D +LYL EIG L Sbjct: 21 LDPDIAIDDSDLSV------DEIQELEIAAADPATFGASANRRSTDLVRLYLQEIGRVRL 74 Query: 71 LTAEEEVYFARRALRGDVASRRRMIESN 98 L +EEV A++ R + R++ +N Sbjct: 75 LGRDEEVSEAQKVQR---YLKLRIVLAN 99 >UniRef50_C1DVG2 RNA polymerase sigma factor n=4 Tax=Hydrogenothermaceae RepID=C1DVG2_SULAA Length = 285 Score = 276 bits (707), Expect = 8e-73, Method: Composition-based stats. Identities = 97/280 (34%), Positives = 152/280 (54%), Gaps = 8/280 (2%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 + + Y+ I PLLT E+E + GD + +++I SNLR V+ IA+RY G+ Sbjct: 8 EGVEYYIRSIYKIPLLTPEQEKEILEKIKLGDKEAFQKLILSNLRFVINIAKRYAGYGIP 67 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 L DLI GN+GLI A ++FDP +G +F +YA WWI+Q+I + + IR P I Sbjct: 68 LQDLISAGNIGLIEAAKRFDPSKGVKFISYAIWWIKQSIINTLSQEGDIIRKPTKIQSLF 127 Query: 176 NVYLRTARELSHKLDHEPSAEEIA-----EQLDKPVDDVSRMLRLNERITSVDTPL-GGD 229 L L+ EPS +EI E L+ D + L N+ S+D P+ D Sbjct: 128 QKISNAYFYLKDSLNREPSVDEIHSFLLREGLEVEKDTIENYLFFNQHFISLDEPILSQD 187 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLE 289 + L D +++ E D+D+ + I + L L+ +++++L RFGL G E TL+ Sbjct: 188 EDIHLSDTISNSGTEDIERKLIDEDILKFIDELLDTLSPREKQILIHRFGLYGEEPKTLK 247 Query: 290 DVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFR 329 +VG +G++RERVRQI++ L++LR++ + IE L R Sbjct: 248 EVGNIVGISRERVRQIEIRLLKKLRKLATKRK--IEDLIR 285 >UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q116K5_TRIEI Length = 496 Score = 276 bits (706), Expect = 9e-73, Method: Composition-based stats. Identities = 89/337 (26%), Positives = 162/337 (48%), Gaps = 44/337 (13%) Query: 27 EKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRA--- 83 E +++ + + + D+ QLY ++ L EEE++ A + Sbjct: 158 EPTEELTNKHNSEGSYDPDIEPPTGTFTEDSIQLYYKQVNSFARLHPEEEIHLAHQIDGL 217 Query: 84 -------------------------------------LRGDVASRRRMIESNLRLVVKIA 106 L ++ +M+ +NLRLV +A Sbjct: 218 LALEKIYEKLEEKLNRSPNEIEWATEAKMSKWELCDRLEQGRRAKNQMVTANLRLVTSVA 277 Query: 107 RRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIR 166 +RY NRGL DLI+EG +GL+RA EKFD +G++FSTY WWIRQ I RAI + +R +R Sbjct: 278 KRYQNRGLDFQDLIQEGVIGLLRATEKFDHTKGYKFSTYGIWWIRQAITRAICDYSRIVR 337 Query: 167 LPIHIVKELNVYLRTARELSHKLDHEP-SAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 LP+++ + ++ + +++S ++ P +AEE+A +++ + + ++ + S+D P Sbjct: 338 LPVYLYETISQIKKIVKQIS--IECSPLTAEEVATRMEMTTEKLQFIIECAQETLSLDYP 395 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 + +++ P ++ +++ + L L ++R VL RFGL + Sbjct: 396 INKGENIIYKEMIK-FNGETPTKYVFENCLQEDVESVLKTLTERERNVLQMRFGLDDGQE 454 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 TL+++G LTRER+RQI+ + LR+L + + L Sbjct: 455 KTLKEIGDTFNLTRERIRQIEAKALRKLEDPKRNHIL 491 >UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x (Fragment) n=2 Tax=rosids RepID=D1IHF7_VITVI Length = 561 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 93/308 (30%), Positives = 149/308 (48%), Gaps = 40/308 (12%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALR------------------------------ 85 D +L+L LLTA+EE + Sbjct: 247 DPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGL 306 Query: 86 ----------GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 SR+++I +NLR+VV IA++Y RGL L DL++EG++GL+ +VEKF Sbjct: 307 SCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFK 366 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 P G RF++YA WWIRQ + +AI +RTIRLP ++ L R + H+P+ Sbjct: 367 PNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTK 426 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 EEIAE++ ++ + R+L S+ P+ D + ++ AD P+ + M Sbjct: 427 EEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLM 486 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 +Q + L L K+R ++ RFG+ TL ++G G ++ERVRQ++ L +L++ Sbjct: 487 RQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQ 546 Query: 316 ILQTQGLN 323 L + GL Sbjct: 547 CLSSHGLE 554 >UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKU3_THEYD Length = 427 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 93/243 (38%), Positives = 157/243 (64%), Gaps = 1/243 (0%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 ++ ++ +MIESNL+LVV IA++Y RGL L DLI+EGN+GL++AVEKF+ ++G Sbjct: 179 IKKIFNEFTEAKNKMIESNLKLVVSIAKKYTGRGLNLEDLIQEGNIGLMKAVEKFEYKKG 238 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 F+FSTY+TWWIRQ+I RAI ++TIR+P+H++ + + REL ++EP EEI+ Sbjct: 239 FKFSTYSTWWIRQSINRAIAEHSKTIRIPVHVIDNICKINKIYRELYQNSENEPDIEEIS 298 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 L+ P D ++ L +++ S+D L D + L + + D P + DD+K I Sbjct: 299 LNLNIPSDKIADFLAISKEPVSIDMSL-RDDDSLLKEFIEDMNSPNPYEEALHDDLKHLI 357 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 K L+ +++E+L RR+G+ + +L++VG+E ++RER+RQI++ +R+L+ + + Sbjct: 358 EKVFSLLSKREKEILMRRYGINEEKPKSLDEVGKEFSVSRERIRQIELRAMRKLKRLCRL 417 Query: 320 QGL 322 + L Sbjct: 418 KWL 420 >UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID=O22455_ARATH Length = 574 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 138/244 (56%), Gaps = 1/244 (0%) Query: 79 FARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPER 138 +R G + + +MI+SN+RLV+ IA+ Y G+ L DL++EG GL+R EKFD + Sbjct: 324 LRQRIHHGTL-CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATK 382 Query: 139 GFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEI 198 GF+FSTYA WWI+Q + +++ +Q+R IRLP H+V+ ++L + P EEI Sbjct: 383 GFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEI 442 Query: 199 AEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQS 258 AE + + +L + S+D +G + +++AD + ED + M+Q Sbjct: 443 AEATGLSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQD 502 Query: 259 IVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318 + K L L ++++V+ RFG+ TL+++G +G++RERVRQI+ R+L+ + Sbjct: 503 LDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKR 562 Query: 319 TQGL 322 L Sbjct: 563 NNHL 566 >UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GEJ9_PHATR Length = 329 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 106/325 (32%), Positives = 162/325 (49%), Gaps = 56/325 (17%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRAL------------------------------- 84 D+ + Y+ + LL EE+ R Sbjct: 1 DSIRSYIKTMCNHELLNKNEEIILGREVQVLIQYEATREQLEAELLRPPTYQEWATKIQP 60 Query: 85 -----------RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 R + ++ + ESN+RLVV IA+RY +RGL+ DL +EG LGL RA EK Sbjct: 61 DMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQEGILGLTRACEK 120 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 FDPERGFRFSTYA+WWI+Q+I RAI +Q RTIRLP+HI ++N + REL +L + Sbjct: 121 FDPERGFRFSTYASWWIKQSIMRAIADQGRTIRLPVHIHDQINALRKVERELKAELGRDA 180 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL-------------GGDSEKALLDILAD 240 EEI E+ + + + R++++ S++ L G D L D++ D Sbjct: 181 RLEEITEKSTLTAEKIEFLNRVSQQDVSMEQELRTSKSKGSSAGLGGPDGGLTLGDVMGD 240 Query: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 + P + +K I + + LN++++ V+ RFGL +A TLE++GR +TRE Sbjct: 241 PEA-QPAEEASYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRE 299 Query: 301 RVRQIQVEGLRRLREILQTQGLNIE 325 R+RQI+ L +LR+ + + Sbjct: 300 RIRQIESRALHKLRQPYRNHAVKCY 324 >UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK04_9BACT Length = 404 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 147/245 (60%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 R++ S M+E NLRLV+ IAR+Y N LDLI+EGN+GL+ AVEK+D G+ Sbjct: 159 RKSYYRMENSVNAMVEGNLRLVISIARKYSNSQEGFLDLIQEGNIGLVSAVEKYDASFGY 218 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 FSTYATWWIRQ + RA RT++LP +I+ ++N RT REL K E + +E++E Sbjct: 219 TFSTYATWWIRQAVSRARTELVRTMKLPANIMVKVNKIYRTERELFQKFGREATIDEVSE 278 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 ++ + + R+ ++ S+ T + + L DI++++ + P+ + + +S+V Sbjct: 279 AVELSPAKIRSLKRMCQQPISLQTTVSEEHTGELGDIVSNDDDVLPDAEVEQKQLHESLV 338 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 L LN +++E+L RFGL E TLE++ E G++RER+RQI+ L++LR + Sbjct: 339 AMLDILNEREQEILRMRFGLADGEYHTLENIANEFGISRERIRQIETSALKKLRRPTAVK 398 Query: 321 GLNIE 325 L ++ Sbjct: 399 CLGLD 403 >UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C9_CYAPA Length = 431 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 163/309 (52%), Gaps = 49/309 (15%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRAL------------------------------- 84 D+ + YL EIG LL AE+E+ A+R Sbjct: 112 DSGRRYLQEIGEISLLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAAL 171 Query: 85 ----------RGDVASRRRMIESNLRLVVKIARRYGN-RG-LALLDLIEEGNLGLIRAVE 132 R +R R++ +NLR VV +A++Y RG +++ DLI+EGN+GLIRAVE Sbjct: 172 SDAEELRHMVRVGTLARDRLVRANLRWVVAVAKKYHKQRGTMSMQDLIQEGNIGLIRAVE 231 Query: 133 KFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHE 192 KFDP G+RF+TYATWWIRQ I R+I N +R IRLP H +++N R LS L + Sbjct: 232 KFDPRMGYRFTTYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQ 291 Query: 193 PSAEEIAEQLDKPVDDVSRMLRLNERI--TSVDTPLGGDSEK--ALLDILADEKENGPED 248 P+ EIAE + + + + + S+D P+ + + D + E E GP D Sbjct: 292 PTEAEIAEHVGLDPSRMRKFVESAAAVATVSLDVPINESDNQSATIGDFIRSENE-GPAD 350 Query: 249 TTQDDDMKQSIVKWLFE-LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307 + + M++S+ + L + L+ ++ VL RFGL E TL VG +G+TRERVRQI++ Sbjct: 351 RAERELMRESVARTLAKALSEREYMVLRMRFGLDDGEPKTLNQVGETLGVTRERVRQIEM 410 Query: 308 EGLRRLREI 316 + LR+LR Sbjct: 411 KALRKLRRP 419 >UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKA7_9BACT Length = 301 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 86/266 (32%), Positives = 146/266 (54%), Gaps = 1/266 (0%) Query: 57 ATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLAL 116 + + YL I +T +E R GD + +I NL+ VV IA RY N GL + Sbjct: 32 SLKHYLNSISAYKPMTKAQEFAIGERIQAGDEDALNTLILCNLKFVVSIANRYRNTGLPI 91 Query: 117 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELN 176 D+I +GNLGL+ A ++FD + +F +YA WWIRQ+I +A+ Q+ T++LPI L Sbjct: 92 ADIINQGNLGLVEAAKRFDHTKDVKFISYAVWWIRQSIIQALAEQSGTVKLPIKQAGILY 151 Query: 177 VYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLD 236 +L+ KL+ EP+A E+AEQL+ D+ +LR++ S++ P+ +++ +D Sbjct: 152 KINGATEKLNKKLNREPTASELAEQLEMDEADIENVLRVSRNYLSLEAPIKDGEDRSFID 211 Query: 237 ILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIG 296 +L E+ +K ++ + EL+ ++ +++ RFGL TLE++G + Sbjct: 212 LLE-SGTKDIEEDIISKTLKTALDDIVDELDERESQIIEWRFGLNEEAPKTLEEIGELMD 270 Query: 297 LTRERVRQIQVEGLRRLREILQTQGL 322 ++RERVRQ++ L +LR+ L Sbjct: 271 ISRERVRQLETRALSKLRKKAMKNKL 296 >UniRef50_A6D4Y7 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1 RepID=A6D4Y7_9VIBR Length = 289 Score = 273 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 120/281 (42%), Positives = 177/281 (62%), Gaps = 3/281 (1%) Query: 44 ELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVV 103 E L++ +R D Y+ ++ LL+ E+E ++A A RGD A+R +IESNLRLVV Sbjct: 6 ERLNKQYEERGTDFYSKYIHDVVGIDLLSPEQEYHYATLARRGDKAARDVLIESNLRLVV 65 Query: 104 KIARRYGNRGLA---LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 KIAR Y RGL+ +LDLIEEGNLGLI+A++KF+PE+GFRFSTYA WWIR++IE ++MN Sbjct: 66 KIARNYTKRGLSNHTILDLIEEGNLGLIKAIDKFEPEKGFRFSTYAVWWIRESIESSLMN 125 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERIT 220 RT+RLP+H++KE+N + E+ L PS +EIAE+ K +S ++ ++ I Sbjct: 126 TGRTVRLPVHVIKEINRLSKQTNEIIADLQRPPSVKEIAEKTAKSQAQISDLIHMSGFIE 185 Query: 221 SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL 280 S + D E L+ E P D ++ + QS+ + L K R+++ RFGL Sbjct: 186 SSSSVDTIDKEFQSLETCKSEAIPEPYDICHNEKLSQSLESVVLSLPEKYRDIVIHRFGL 245 Query: 281 LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 G E TL+++G GL++ERVRQ+Q EG+ +L+ L+ G Sbjct: 246 FGKEVLTLDNLGEMFGLSKERVRQLQQEGISKLQNKLKFDG 286 >UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis RepID=B9S0J0_RICCO Length = 548 Score = 273 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 85/243 (34%), Positives = 144/243 (59%) Query: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143 L SR ++I +NLR+VV IA++Y RGL+L DL++EG++GL++++EKF P+ G RF+ Sbjct: 302 LHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFA 361 Query: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD 203 TYA WWIRQT+ +AI +RTIRLP ++ L R + +H P+ EE+A+++ Sbjct: 362 TYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIG 421 Query: 204 KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL 263 + R+L + S+ + D E +I AD + PE M++ ++ L Sbjct: 422 ITTVRLERLLYMARMPLSMQQTVWADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLL 481 Query: 264 FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 LN ++R+++ R+G+ + +L ++G GL++ERVRQ++ L +L++ L + GL Sbjct: 482 NILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQCLASHGLE 541 Query: 324 IEA 326 A Sbjct: 542 AYA 544 >UniRef50_Q5DYR1 RNA polymerase sigma factor n=3 Tax=Aliivibrio RepID=Q5DYR1_VIBF1 Length = 294 Score = 273 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 121/283 (42%), Positives = 186/283 (65%), Gaps = 3/283 (1%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 + Q + D+ LYL EI LLTAEEE+ ++R +GDV++R +IESNLRLVVK+ Sbjct: 8 MRVCEEQGLNDSYSLYLKEINRYQLLTAEEELAYSRLYKKGDVSARNTLIESNLRLVVKV 67 Query: 106 ARRYGNRG---LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQT 162 A +Y R LA+LD+IEEGNLGLI+A++KF+PE G+RFSTYA WWIR++IE A+ N + Sbjct: 68 ANKYRKRNQTDLAILDIIEEGNLGLIKAIDKFNPELGYRFSTYAVWWIRESIESALFNHS 127 Query: 163 RTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSV 222 RT+RLP+HI KELN YLR ARELS L EPS +I+ ++ VS+++ L + Sbjct: 128 RTVRLPVHITKELNTYLRAARELSKSLKREPSIRDISTYCEEEQIKVSKIISLIPNQLTC 187 Query: 223 DTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLG 282 + + ++ ++ K P+ + ++++ ++ W+ LN +++E++ R+GL G Sbjct: 188 HSACSDELSPKFFELSSNNKALEPDSSLSQNNLEMNLSSWIDSLNYREKEIIINRYGLFG 247 Query: 283 YEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 + TLED+G+++ L++ERVRQIQ E L +L I + L++E Sbjct: 248 CKVKTLEDLGKDLDLSKERVRQIQSETLIKLNTIFKKNKLDLE 290 >UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepID=Q9LD95_ARATH Length = 547 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 166/350 (47%), Gaps = 48/350 (13%) Query: 25 FDEKALVEQEPSDNDLAEEELLSQGATQRV--------LDATQLYLGEIGYSPLLTAEEE 76 + +A + P ND+ +E + Q + + DA QL+L LLTA+EE Sbjct: 194 LERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEE 253 Query: 77 VYFARRALR----------------------------------------GDVASRRRMIE 96 +SR ++I Sbjct: 254 AELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLIT 313 Query: 97 SNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIER 156 +NLRLVV IA++Y NRGL DL++EG++GL+++VEKF P+ G RF+TYA WWIRQ+I + Sbjct: 314 ANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRK 373 Query: 157 AIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLN 216 +I +RTIRLP ++ L + + ++ PS EE+A + + + ++L Sbjct: 374 SIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNT 433 Query: 217 ERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLAR 276 S+ P+ D + +I D P + M+ + L L+ K+R ++ Sbjct: 434 RTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKL 493 Query: 277 RFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEA 326 RFG+ G + +L ++G GL++ERVRQ++ L RL++ + + GL+ A Sbjct: 494 RFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYA 543 >UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31 Tax=Bacteria RepID=RPOD_SERMA Length = 215 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 84/209 (40%), Positives = 140/209 (66%) Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 L LDLI+EGN+GL++AV+KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ Sbjct: 1 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 60 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 +N R +R++ ++ EP+ EE+AE++ P D + ++L++ + S++TP+G D + Sbjct: 61 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 120 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 L D + D P D+ + ++ + L L A++ +VL RFG+ TLE+VG+ Sbjct: 121 LGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREXKVLRMRFGIDMNTDHTLEEVGK 180 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQGL 322 + +TRER+RQI+ + LR+LR +++ L Sbjct: 181 QFDVTRERIRQIEAKALRKLRHPSRSEVL 209 >UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4C50 Length = 521 Score = 273 bits (698), Expect = 8e-72, Method: Composition-based stats. Identities = 98/261 (37%), Positives = 153/261 (58%), Gaps = 3/261 (1%) Query: 62 LGEIGYSPLLTAEEEVYF---ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 L + +TA+E R+ A R+ + E+NLRLVV IA+ Y NRGL D Sbjct: 249 LRDAECRACMTADELAALVRVLRKRRLAYQAVRKELAEANLRLVVSIAKNYRNRGLPFSD 308 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI+EGN GL+RAV+K++ F+F TYATWW+RQ I RA+ + RT+R+P H + L+ Sbjct: 309 LIQEGNRGLMRAVDKYEWRLEFKFGTYATWWVRQGITRALHDNARTVRVPCHQISLLSRM 368 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 + EL+ EP++EE+AE L ++ + + S++ +GGD E+AL D L Sbjct: 369 EKLRGELTVATGREPTSEELAEALGVKPEEARSLRIVGRHPVSLNDSVGGDGERALEDFL 428 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 +D + P + + +K+ I + L L ++REV+ RFGL TL++V ++ G+T Sbjct: 429 SDTHISPPGEHVDANLLKERIGEVLKSLAPREREVIELRFGLKDGTPKTLDEVAKQYGIT 488 Query: 299 RERVRQIQVEGLRRLREILQT 319 RER+RQI+ GL +LR+ ++ Sbjct: 489 RERIRQIEARGLLKLRQPTRS 509 >UniRef50_C6Y0F4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y0F4_PEDHD Length = 289 Score = 273 bits (698), Expect = 8e-72, Method: Composition-based stats. Identities = 88/273 (32%), Positives = 148/273 (54%) Query: 41 AEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR 100 + +S +R D + YL EIG L EEE GD + R+I+ NLR Sbjct: 1 MKRFTISPSIAKRDSDVVESYLSEIGRISLTDPEEEFRLVSAIRNGDQEALHRLIKGNLR 60 Query: 101 LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 VV +A++Y ++GL L DLI EGN+GLI+A +FD RGF+F T+A WW+RQ I +AI Sbjct: 61 FVVSVAKKYQDKGLKLGDLINEGNIGLIKAAHRFDATRGFKFITFAVWWVRQAILQAIAE 120 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERIT 220 Q R IRLP + + ++ + +L +L+ P+ EE+A VD V Sbjct: 121 QRRLIRLPGNQLLGISRLNQAVLKLEQQLERMPTVEELAVYTGFTVDKVMDYTANAAFTY 180 Query: 221 SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL 280 S+D + +S L++++ADE + + T + + + L L+ ++++++ +GL Sbjct: 181 SLDDVIKEESGSTLMEVIADEATHQTDHFTLAASLSTDLNRALDILSKREQKIIILFYGL 240 Query: 281 LGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 GY +ED+ + + L++ER+RQ++ + + L Sbjct: 241 NGYPQTAIEDMQKILKLSKERIRQLKDKAHKTL 273 >UniRef50_D0YYF5 RNA polymerase sigma factor RpoS n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YYF5_LISDA Length = 282 Score = 272 bits (697), Expect = 9e-72, Method: Composition-based stats. Identities = 108/273 (39%), Positives = 171/273 (62%), Gaps = 3/273 (1%) Query: 58 TQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALL 117 T +YL ++ LLT EEE+ + + GD +R ++IESNLRLVV IA++ +RGL L Sbjct: 7 TGIYLKQLRSRALLTKEEEIELSIKVQAGDQKARAKLIESNLRLVVSIAKKMQHRGLDLD 66 Query: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177 DLI EGN+GLI AVEKF+P+ G+RFSTYATWWI+Q ++RAI N +R +RLP+HI KEL Sbjct: 67 DLINEGNIGLITAVEKFNPDYGYRFSTYATWWIKQAMDRAIHNHSREVRLPVHISKELCT 126 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 +E+S K + + ++++ P +++ ++L+ R +S+D D +I Sbjct: 127 IYSAFKEMSTK-SEQVTIDQVSALTGSPKEEIEKILKYERRYSSLDDQF--DEGAKFSEI 183 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 + D + + ++D + + L EL + +E++ARRFGL GYE TL++V + L Sbjct: 184 IPDHSKLDHTELLNEEDQTEVLAMLLAELKPRDQEIIARRFGLFGYEPHTLQEVATAVNL 243 Query: 298 TRERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 TRERVRQ+Q+ +RL ++ + + +E++ E Sbjct: 244 TRERVRQLQILAQQRLAAKMRDRNITLESMLVE 276 >UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacteria RepID=Q7U3K5_SYNPX Length = 467 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 106/247 (42%), Positives = 148/247 (59%), Gaps = 1/247 (0%) Query: 76 EVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 E + ALR ++ MI++NLRLVV +A++Y RG+ LLDL++EG LGL RAVEKFD Sbjct: 213 EARELKTALRNGRRAKDHMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFD 272 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 P RGFRFSTYA WWIRQ + RAI Q+RTIRLP+H+ ++LN R +E++ S Sbjct: 273 PTRGFRFSTYAYWWIRQGMTRAIATQSRTIRLPVHVTEKLNRIKRAQQEIATNEGRIASI 332 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 ++A L D V + L R S+DT +G D + L D++ D K PE T D++ Sbjct: 333 ADLARALKLSEDTVRQTLARVPRSVSLDTRVGRDQDTQLGDLIEDGKA-TPEQTLTHDEL 391 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 + L EL +++ VL RRFGL TL +G + L+RERVRQI+ L +LR+ Sbjct: 392 HNDLEHLLDELTSREAAVLRRRFGLEDDTPQTLAQIGEALKLSRERVRQIETRALLKLRQ 451 Query: 316 ILQTQGL 322 + + Sbjct: 452 PQRRSKV 458 Score = 42.1 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 21/38 (55%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDV 88 ++ D +LYL +IG LLT EEEV AR R + Sbjct: 106 SRSTTDLLRLYLQDIGRVDLLTNEEEVTLARLVQRREA 143 >UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LEA3_RALME Length = 617 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 94/225 (41%), Positives = 145/225 (64%) Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 151 MI SNLRLVV A++Y +RG+ LLDLI+EGNLGL+RAV++FD RG++FSTYATWWIR Sbjct: 380 DEMIRSNLRLVVSNAKKYLHRGMPLLDLIQEGNLGLMRAVDRFDYRRGYKFSTYATWWIR 439 Query: 152 QTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSR 211 Q I RAI ++ TIR+PIH+V+ + R +REL H+ P+ E +A +L V V Sbjct: 440 QGITRAIADKGPTIRIPIHLVEVVGKVNRASRELFHETGEAPAPEALAARLSLSVKKVKA 499 Query: 212 MLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQR 271 +L L + S++ +G + L D L DE P+++ +++ + + L L ++ Sbjct: 500 ILDLVKEPLSLEMSVGESGDALLWDTLTDECSASPDESAMRVSLRKDLDEALATLKPREA 559 Query: 272 EVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 +++ R+G+ TLE++G++ GL+RERVRQ++ + LR+LR Sbjct: 560 KIVKMRYGVDAGTDYTLEEIGQQYGLSRERVRQLERQALRKLRNP 604 Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 42/96 (43%), Gaps = 6/96 (6%) Query: 29 ALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDV 88 ALV E + A + + G R D QLYL EIG PLLT E+EV ARR Sbjct: 68 ALVVDEAVIEEAAAAVMQADGREARTTDPVQLYLREIGTIPLLTREDEVAIARRHEIAVT 127 Query: 89 ASRRRMIESNLRLVVK----IARRYGNRGLALLDLI 120 M+ LVV +A +A+ DLI Sbjct: 128 EMVAEMVSC--PLVVYELLTMADEIERGEMAVDDLI 161 >UniRef50_D1AXM9 RNA polymerase sigma factor n=5 Tax=Fusobacteriaceae RepID=D1AXM9_STRM9 Length = 280 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 91/274 (33%), Positives = 160/274 (58%), Gaps = 4/274 (1%) Query: 47 SQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRA-LRGDVASRRRMIESNLRLVVKI 105 ++ ++ LY+ ++ LLT+EEEV +R D ++ +I SNLRLVV Sbjct: 5 KTNSSDNNINLISLYISDLQNHELLTSEEEVELFKRVREENDEQAKHLLILSNLRLVVSE 64 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A++ G+ L+DLI EGNLGLI++++KFD +G RFSTYA WWI+QTI+++I+N R I Sbjct: 65 AKKLLGNGMPLIDLISEGNLGLIKSIDKFDYTKGLRFSTYAVWWIKQTIKKSIVNLGRDI 124 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 R+P + ++L+ + ++ P+AE IAE L V + + I S++ Sbjct: 125 RIPSYKYEQLSKVNKVIESYQNEFGDIPTAEYIAEVLGMKPSKVVLLQNEFQEIISLNDA 184 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 +G L D++ + +N +D ++D + + + LN +++E+L R+GL + Sbjct: 185 IG--DNIFLEDVIG-QSDNVEDDIIRNDQLSEMYNLFDKTLNPREKEILELRYGLANNKI 241 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 TL+++G ++ +TRERVRQI+ + + +L++ L+ Sbjct: 242 HTLKEIGEKLSITRERVRQIEKKAITKLKKNLEE 275 >UniRef50_A6ECH2 RNA polymerase sigma factor n=2 Tax=Pedobacter sp. BAL39 RepID=A6ECH2_9SPHI Length = 288 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 93/275 (33%), Positives = 151/275 (54%), Gaps = 1/275 (0%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 +S+ T R D+ + YL EI LL EEEV A GD A+ +++ +NLR VV + Sbjct: 6 ISKSITDRGGDSLEKYLSEISKIELLNVEEEVRLASIVREGDRAALDKLVSANLRFVVSV 65 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A+ Y + GL L DLI EGNLGLI+A ++D +GF+F ++A WWIRQ+I AI +Q R I Sbjct: 66 AKNYQDMGLRLADLISEGNLGLIKAASRYDHTKGFKFISFAVWWIRQSITYAIADQHRMI 125 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 RLP + + + RT+ L KL+ PS EE+AE LD P V + TS+D P Sbjct: 126 RLPGNQIVGITRLNRTSDLLEQKLERRPSLEEVAEALDLPETKVVDYQMSALKTTSLDMP 185 Query: 226 L-GGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYE 284 + G+ ++ + + + + +++ + L L +++++L+ +GL G Sbjct: 186 ILLGEPGTTFGHMIRNSEVEAADAVLDRQSLAENVRRLLSILPPREQKILSLYYGLGGMP 245 Query: 285 AATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 LED+ L++ER+RQ++ + ++ L+ Sbjct: 246 QTRLEDMVPVFHLSKERLRQLKDKAVKTLKACCSE 280 >UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium caldarium RepID=Q9ZTL1_CYACA Length = 589 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 158/305 (51%), Gaps = 44/305 (14%) Query: 56 DATQLYLGEIGYSPLLTAEEEVY-----------------FARRALR------------- 85 D+ YL EIG L+ EEE RR R Sbjct: 257 DSFSTYLTEIGKVHRLSLEEEKEICQEIAFFTHLEAVREDLRRRIGRLPREHEWAMETNM 316 Query: 86 ----------GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 ++ RM+ +NLRLV+ A+R+ NRG+A DL++EG++GLIR VEK+D Sbjct: 317 SVSELRGKLIKGRRAKNRMVAANLRLVICFAKRFRNRGVAFQDLVQEGSIGLIRGVEKYD 376 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 RGFRFSTYA+WWIRQ I +A++ ++ RLP+H+ + + R + EL + L EP+ Sbjct: 377 ANRGFRFSTYASWWIRQGIHKALLECSKMFRLPVHVNEMIKEIRRCSYELMNILGREPTK 436 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK----ALLDILADEKENGPEDTTQ 251 EIA ++ P + V +L+ + S++ PL G L D+++ PED+ Sbjct: 437 LEIAMKVGMPEEKVIFLLQRAQTALSLEMPLRGSDSSLESRTLGDVVSSTASPSPEDSAF 496 Query: 252 DDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLR 311 ++ + + L +L+ ++REV+ RFGL +L +VG +TRERVRQI+ LR Sbjct: 497 GTSLRYDLERALSQLDFREREVIRMRFGLDDGRTKSLGEVGSLFCVTRERVRQIETRALR 556 Query: 312 RLREI 316 +LR+ Sbjct: 557 KLRDP 561 >UniRef50_Q2JMC5 RNA polymerase sigma factor n=2 Tax=Synechococcus RepID=Q2JMC5_SYNJB Length = 319 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 110/291 (37%), Positives = 160/291 (54%), Gaps = 34/291 (11%) Query: 49 GATQRVLDATQLYLGEIGYSPLLTAEEEVYFA---------------------------- 80 + + DA +L IG LLTAEEE+ A Sbjct: 2 SESLDLQDAVGRFLKTIGRYSLLTAEEELRLAHQVQRMVTLLEQRQPHESVEGWSQRLGI 61 Query: 81 -----RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 ++ LR A+++RM+E NLRLVV IA+RY NRGL LDLI+EG +GL RAVEKFD Sbjct: 62 PLAELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQEGTIGLTRAVEKFD 121 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 P RG++FSTYATWWIRQ++ R I N+ R IRLP H+ ++++ R RELS + P A Sbjct: 122 PTRGYKFSTYATWWIRQSVNRGIQNKGRMIRLPAHMYEKVSQVKRRYRELSAERGSRPQA 181 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 EE+ + LD + + R + S++ +G + L + DE N P + Sbjct: 182 EEVFDSLDIGDNYRELITRHMAEMRSLNVGVGDEDGTELQHFIPDED-NDPVEHLTQLAR 240 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQ 306 ++ + + +L+ ++R+V+ R+GL G TL ++G IGL+RERVRQI+ Sbjct: 241 REEVRALVGQLSERERQVIVARYGLDGSRGLTLREIGEHIGLSRERVRQIE 291 >UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0QYD2_BRAHW Length = 309 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 97/294 (32%), Positives = 166/294 (56%), Gaps = 25/294 (8%) Query: 45 LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRAL--RGDVA------------- 89 +L + Q +YL +IG LT EEE+ +R R D A Sbjct: 1 MLKKDINQEYKGPVSVYLKQIGEIRRLTKEEELDLWQRLEVCRNDRALLENNDDEESLKK 60 Query: 90 ----------SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 + ++++SNLRLV+ IA+RY N G+ +D+I+EGN+GLI AV++F+ ++G Sbjct: 61 IEEIDKEIDSIQHKLVKSNLRLVISIAKRYYNSGVPFIDIIDEGNIGLIEAVKRFEYKKG 120 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 F+FSTY WWI+Q+I + I ++ IR P+HI + + ++T++ L+ KL +P+ +EI+ Sbjct: 121 FKFSTYGVWWIKQSIVKEISSKRHIIRFPMHIARLIKKSIQTSKTLTQKLGRDPTIDEIS 180 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 +++ +S ++ + SVD+ + I+ D+ P D ++ ++ Sbjct: 181 KEMKIDRKTLSYIMIFTQDTASVDSFFRNSDNNDMTSIIEDKNFPSPHQKAFMDSLRDTL 240 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 + L L+ K+R V+ R+GL G EA TLED G+E+ +TRERVRQIQ++ +++L Sbjct: 241 TEALKCLDEKERTVIISRYGLYGKEAKTLEDTGKELNITRERVRQIQIKAIKKL 294 >UniRef50_Q1PZV7 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZV7_9BACT Length = 256 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 106/253 (41%), Positives = 162/253 (64%), Gaps = 2/253 (0%) Query: 70 LLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIR 129 +LT EEE+ AR+ +GD +R ++I++NLRLVV IA+ + NRG + LDLIEEGNLGLIR Sbjct: 1 MLTFEEELEIARKVAKGDAEAREKLIKANLRLVVSIAKEFVNRGFSFLDLIEEGNLGLIR 60 Query: 130 AVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKL 189 AVE FD G RFSTYATWWI+Q I RAI N+ R IR+P ++++ ++ + L K Sbjct: 61 AVEDFDITTGNRFSTYATWWIKQAIRRAIANKARIIRIPSYMLQRISQMKHASSGLLKKH 120 Query: 190 DHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL--GGDSEKALLDILADEKENGPE 247 + PS +EIA ++D +V + + +TS+D PL G D AL DI + K PE Sbjct: 121 ERSPSEQEIAAEIDITAQNVKNIELSLQSMTSLDAPLVSGADIIWALSDITPNGKTLPPE 180 Query: 248 DTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307 + ++ K+++ K L L+ + V+ R+GL+ E+ TLED+ + + ++RERVRQI+ Sbjct: 181 EGLEETYEKETLKKLLDTLDKRAATVITMRYGLVDGESRTLEDISKILKISRERVRQIEK 240 Query: 308 EGLRRLREILQTQ 320 E +++L ++ + Sbjct: 241 ETIQKLHYLITKE 253 >UniRef50_Q39477 RNA polymerase sigma factor (Fragment) n=1 Tax=Cyanidium caldarium RepID=Q39477_CYACA Length = 609 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 102/389 (26%), Positives = 159/389 (40%), Gaps = 84/389 (21%) Query: 12 NEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQ------RVLDATQLYLGEI 65 +D ++ EK ++ + D E + T + + +L EI Sbjct: 209 VDDMSMEDIHYLEKQEKEILSMAITKEDALLIESIVNRPTTASSKQIKKGSSMGAFLKEI 268 Query: 66 GYSPLLTAEEEVYFARRALR---------------------------------------- 85 G PLLT + V AR + Sbjct: 269 GSVPLLTESQVVSLAREIRKLALWNATRIQLRHEYGKEPDRTEWAKALNMSAEELTRNLL 328 Query: 86 GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTY 145 +R ++ +NLRLVV +A+++ NRGL++ DLI+EG++GLI+ E+FD GFRFSTY Sbjct: 329 RAQRARESLVAANLRLVVSVAKQFTNRGLSMQDLIQEGSIGLIKGAERFDYRTGFRFSTY 388 Query: 146 ATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKP 205 A WWIRQ ++RAI + +R IR+P I R ELS L +P+ E+A+ LD Sbjct: 389 AMWWIRQAMQRAIADTSRPIRIPSTITDLSVQIYRARLELSSTLGRDPTDAELADFLDIS 448 Query: 206 VDDVSRMLRLNER--ITSVDTPLG-------------GD--------------------- 229 V + + + S+D P+ GD Sbjct: 449 VQRLQDVKLYTNQSATVSLDAPVSRQVTNTCIKSKGTGDTDVFSSKADGKLSKNGYGSRH 508 Query: 230 --SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 + L D + ++ PE D M+ I L LN +REV+ RFGL + Sbjct: 509 KLGDFTLGDTVQTDESVSPEHMMADSLMRDDIECALSLLNPYEREVIRMRFGLDDGRMKS 568 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREI 316 +++V + R+R+I+ LR+LR Sbjct: 569 VDEVCAYYCVQTSRIRRIEARALRKLRHP 597 >UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria RepID=A1S281_SHEAM Length = 969 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 107/322 (33%), Positives = 159/322 (49%), Gaps = 19/322 (5%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLY-L 62 + E E ++ E L E + + A L +Q LY L Sbjct: 657 PRKTAESVAEQKMGRELISQLKTEYPLCEDKLERHAGAINRLQAQMQNINQKTGIDLYSL 716 Query: 63 GEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEE 122 +IG ++ R A+R MI NLRLV+ +A +Y RGL L DL++E Sbjct: 717 QDIGSK-----------IKKLQRDISAARDEMITFNLRLVLSVANKYLGRGLELADLVQE 765 Query: 123 GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTA 182 GN+GL++AVEKFD +GF+FSTYATWWIRQ I RAI +Q R IR+P+H+ + LN + + Sbjct: 766 GNIGLMKAVEKFDHRKGFKFSTYATWWIRQAITRAIADQARIIRIPVHVNESLNKLISAS 825 Query: 183 RELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEK 242 + L+HK P E++ L P V + ++ P+ D Sbjct: 826 KVLTHKFGRGPKISELSLILSMPETKVENLKQILVM-----EPVAEADHNTNG--YVDWA 878 Query: 243 ENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERV 302 PE+ DDD +I L L K+++VL RFG+ TLE+VG++ +TRER+ Sbjct: 879 AMSPEEEIIDDDRDTNIKDLLKGLTDKEKKVLELRFGINAATELTLEEVGQQFDVTRERI 938 Query: 303 RQIQVEGLRRLREILQTQGLNI 324 RQI+ + L++L ++ L I Sbjct: 939 RQIEAKSLKKLAHTSRSSHLAI 960 >UniRef50_A5UVI3 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UVI3_ROSS1 Length = 398 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 102/324 (31%), Positives = 174/324 (53%), Gaps = 30/324 (9%) Query: 19 ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGY--SPLLTAEEE 76 E + +E + E ++DL ++ ++ A + V + +G G LL+A +E Sbjct: 61 ERILRTLEECQVQVVEAEESDLGNDDFATEIADE-VFEMLAEMMGRAGEFDHELLSAADE 119 Query: 77 VYF-------------------------ARRALRGDVASRRRMIESNLRLVVKIARRYG- 110 A R ++ + ++ NLRLV KIA RY Sbjct: 120 RRLLEIYHDGLRAKRELQSGLSSVQQYAAERRIKASEEAIDTLMRCNLRLVAKIATRYMP 179 Query: 111 -NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 R L DL++EG +GL++A+E+FD R STYA +WIRQ+I+RA+ +Q R +RLP+ Sbjct: 180 YARHLTFDDLLQEGRIGLLKAIERFDQNCRGRLSTYAVYWIRQSIQRALADQDRMVRLPV 239 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD 229 HIV++L+ +T + EP E+A L + V + R+ + TS+D P+G D Sbjct: 240 HIVEQLHRLRKTCEQFRCIHGREPGDAELANALGVSLAKVRSLWRVAQHHTSIDRPVGAD 299 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLE 289 + L +++AD++E GP+ + + + + L L++++R++L RR+GL+ + TLE Sbjct: 300 TNTFLGELIADDREEGPDFICEQQLLHAVLREVLGHLSSRERDILERRYGLIDGQTHTLE 359 Query: 290 DVGREIGLTRERVRQIQVEGLRRL 313 ++G+ GLTRER+RQI+ + L+RL Sbjct: 360 EIGQIFGLTRERIRQIERKALKRL 383 >UniRef50_Q6MI57 RNA polymerase sigma factor n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MI57_BDEBA Length = 373 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 98/326 (30%), Positives = 171/326 (52%), Gaps = 15/326 (4%) Query: 8 VHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEE---LLSQGATQRVL---DATQLY 61 V +L +DA DE EKA D+ EE L+ T + L D +Y Sbjct: 47 VAELVDDAHSDELRSHEEAEKAYAVPSVEDDLPDVEEDTKTLAVADTSKALTSADPLVMY 106 Query: 62 LGEIGYSPLLTAEEEVYFARRALR-GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 L EI +LT EEE+ A++ D + + ++++NLR VVK+A Y G ++DLI Sbjct: 107 LNEIRRYKVLTREEEMALAKKYFESKDPEAAQALVKANLRFVVKVAAEYSKFGSKMIDLI 166 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP-IHIVKELNVYL 179 +EGN+GL+ AV +F+P +G R TYA WWIR I+ +M Q +R+ ++L L Sbjct: 167 QEGNVGLMHAVREFNPYKGARLITYAVWWIRGYIQEFLMRQYSMVRIGTTQNQRKLFYQL 226 Query: 180 RTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGDSEKALLDIL 238 + +E + EP+ I+ +L P D+V M +R++ R S+D P+ +S L D+ Sbjct: 227 QKEKEALDAMGIEPNIGLISSRLGIPEDEVRDMTMRMSGRDVSLDRPVDDESGTTLGDLQ 286 Query: 239 ADEKENGPEDTTQDDD----MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 + ++ ++ +KQ I + EL+ +++ +L R +L + TL+++G + Sbjct: 287 RGPSDQPLDEALAHNEQLEILKQKIEEIRPELSEREKIILDER--ILNDDPLTLQEIGEK 344 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQ 320 G+TRE VRQ++ +++++ ++ Sbjct: 345 HGITREAVRQMEARLMKKIKAKMEED 370 >UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LPW6_HALO1 Length = 465 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 152/245 (62%), Gaps = 3/245 (1%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 R A +R +++NLRLVV IARR+ + ++L DLI+EGNLGLI+AVE++D RGF Sbjct: 220 RAAEHAARNARNEFVKANLRLVVSIARRFNHGRMSLADLIQEGNLGLIKAVERYDYRRGF 279 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 RFSTYA+WWIR I RA+ ++ R +RLP+H++ + L+ +L++ L +P++EE++E Sbjct: 280 RFSTYASWWIRHAIGRALADKGREVRLPVHMLDAHHRLLKAQHQLTNTLGRQPTSEELSE 339 Query: 201 QLDKPVDDVSRML-RLNERITSVDTPLGGDSEKALLDILADE--KENGPEDTTQDDDMKQ 257 + V+ + +M L ++ S+D P+ + +++ ++L D +E+ + M Sbjct: 340 AANLSVEKIEKMRTHLLDQALSLDRPMNDEDGRSVAEVLQDPHGEEHSALNVLAQRTMSD 399 Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 + K L L + ++L RRFGL E TL+ +G + L+RER+RQ+Q + L ++R L Sbjct: 400 EVRKTLQTLRPIEADILRRRFGLDNDEELTLKQIGEQYNLSRERIRQLQEQALTKMRVAL 459 Query: 318 QTQGL 322 + + + Sbjct: 460 RRKAM 464 >UniRef50_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6A4_9BACT Length = 491 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 92/234 (39%), Positives = 146/234 (62%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +R+R E NLRLVV IA++Y RG+A DLI+EGN GL+RAV+K+D GF+FSTYATWW Sbjct: 250 ARKRFSEGNLRLVVSIAKKYRKRGMAFHDLIQEGNTGLMRAVDKYDYRMGFKFSTYATWW 309 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 I+Q I RA + RTIR+P+H++ +N A+ + E IA + P+ ++ Sbjct: 310 IKQAIIRATEEKVRTIRIPVHMMDVINKSTYVAKAGQGSSAEKIQLEAIARDTNTPLPEI 369 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 R+L++ + S++TP+G D E D + D+K + P Q +K+ I K L L+ + Sbjct: 370 YRLLQITSQPISLETPIGSDGETMFEDFIQDKKIDAPIFLAQRSLLKEQIQKVLDTLSYR 429 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 +RE++ RFG+ +LE++G+ +TRER+RQI+ LR+L+ ++++ L Sbjct: 430 EREIIKLRFGISDGYTHSLEEIGKRFNITRERIRQIEAIALRKLQHPVRSRKLE 483 Score = 44.0 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 21/37 (56%) Query: 48 QGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRAL 84 + R D+ +LYL E+ PLLT EE+Y A++ Sbjct: 31 EEEKSRDYDSVRLYLNEMAKIPLLTPAEEIYLAKKIR 67 >UniRef50_UPI0001BC2D98 RNA polymerase, sigma 32 subunit, RpoH n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2D98 Length = 903 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 112/337 (33%), Positives = 164/337 (48%), Gaps = 56/337 (16%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLG 63 L DL + + DE K +V + +D+D +E L S T D +YL Sbjct: 532 PPLLAEDLPDQSGADEQPAS----KKIVLVKDADDDEPQELLRSVTDTD---DLLGVYLK 584 Query: 64 EIGYSPLLTAEEEVYFARRALRG---------------------------DVASRRRMIE 96 +IG PLL+A EEV A+R G A+ M+ Sbjct: 585 QIGQYPLLSAAEEVAVAKRIEAGMYATHVLSLGQYQTRRERRALEWVKADGAAAYEEMVT 644 Query: 97 SNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIER 156 SNLRLVV IA+R+ L LLDLI+EGNLGL+RAV+KFD +G +FSTYATWWIRQ I+R Sbjct: 645 SNLRLVVSIAKRFNRSKLDLLDLIQEGNLGLVRAVQKFDYTKGNKFSTYATWWIRQGIDR 704 Query: 157 AIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLN 216 I + +TIRLPIH+ ++ + + R +E D V + LR+ Sbjct: 705 GIGDTAKTIRLPIHLFEKASEFWNCMR-----------DDESRAACDHDHSKVEQALRM- 752 Query: 217 ERITSVDTPLG-------GDSEKALLDILADEK--ENGPEDTTQDDDMKQSIVKWLFELN 267 + S++ L +S + D +AD + PE D ++ +++ + L Sbjct: 753 -QPVSLEGYLELQWDGHYAESLMSFDDRIADPDVFTDNPETKIVDGELLETVNSVVDSLP 811 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQ 304 A++ E++ RRFG G TL+ +G +TRER+RQ Sbjct: 812 AREAEIIRRRFGWNGEPPQTLDAIGNRFAVTRERIRQ 848 >UniRef50_A4AF82 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=A4AF82_9ACTN Length = 1108 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 107/338 (31%), Positives = 159/338 (47%), Gaps = 34/338 (10%) Query: 14 DAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTA 73 A DE + +A + D + + L D + PLL+A Sbjct: 581 QAAKDEARDARYAREAARGELTDDGERMQ---LIPDVLGASDDLVLDLRQRLNDFPLLSA 637 Query: 74 EEEVYFARRALRG-----------------------------DVASRRRMIESNLRLVVK 104 ++EV AR G + R SN RLV Sbjct: 638 DQEVLLAREIEAGLFAQEQFDLLDRREQRSPSGRELQWVAKNGEKAFARFAASNYRLVFS 697 Query: 105 IARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRT 164 IARRY N GL DLI+EG LGL+RA++KFD +GF+FSTYATWW+RQ I RA+ + T Sbjct: 698 IARRYVNNGLDYADLIQEGALGLLRAIQKFDYMKGFKFSTYATWWVRQAITRALADLGST 757 Query: 165 IRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDT 224 IR+P+H+V++ N + AR + D +P+ E+A + D SR L S+D Sbjct: 758 IRIPVHMVEQQNKLRQAARSFELQNDRKPTISELAAGAEVTEQDASRALGYEYSFLSIDK 817 Query: 225 PLG-GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGY 283 L G+ +L ++L DE P D + + ++ L L ++ + RFG+ G Sbjct: 818 ELDPGEGFGSLHNLLVDESV-APVDLLIHAEFRGAMNNVLSALPKRESTTIQMRFGIGGQ 876 Query: 284 EAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 + ATL+ +G G+TRER+RQI+ + + LR + QG Sbjct: 877 DPATLDHIGDIFGVTRERIRQIEKKTMESLRSSAEVQG 914 >UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRC2_HALO1 Length = 436 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 138/232 (59%), Gaps = 3/232 (1%) Query: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 150 R + +NLRLVV +ARRY G+ L DLI+EGNLGL+ AV +FD RG RFSTYA WWI Sbjct: 203 RNEFVHANLRLVVTMARRYDRGGMPLADLIQEGNLGLMHAVSRFDYRRGLRFSTYACWWI 262 Query: 151 RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVS 210 R I RA+ +++R +R+P+H+++ + +L +L EP+ E+A+ P+ ++ Sbjct: 263 RHAIGRALADKSRAVRIPVHMLEAQQQLAKVQAKLIGELGREPTPSELAKAAQVPLAKLN 322 Query: 211 RMLR-LNERITSVDTPLGGDSEKALLDILADE--KENGPEDTTQDDDMKQSIVKWLFELN 267 +M R L + S+D PL D ++A D+LAD +++ P D + + L L Sbjct: 323 QMHRYLMGQPMSLDRPLYDDDDRAFGDMLADPLSEDSSPVDDLTTQTLTSRVETLLDHLT 382 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 + +VL +RFGL+ E T ++G + L+RER+RQIQ L +LR L+ Sbjct: 383 PIEADVLRQRFGLMDDEERTFREIGDQYDLSRERIRQIQNAALGKLRRALER 434 >UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderiales RepID=B1K0Z2_BURCC Length = 857 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 89/243 (36%), Positives = 138/243 (56%), Gaps = 4/243 (1%) Query: 83 ALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 142 A++ +R RM +NL+LV +A++Y G L DL +EGN+GL++AVE+FD RGF+F Sbjct: 508 AMKAYQLARERMAVANLKLVFHLAKKYRYSGEPLDDLAQEGNIGLLKAVERFDWRRGFKF 567 Query: 143 STYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL 202 STYATWWIRQ I R + ++ RT+R+P+H+ ++ R + L + P EIA +L Sbjct: 568 STYATWWIRQQIGRHLADKCRTVRVPVHVHEKAQRLSRETQALESETGRAPELHEIAARL 627 Query: 203 DKPVDDVSRMLRLNERITSVDT-PLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 + V V+ + RL + P+ E +++ +D P D ++ ++I K Sbjct: 628 NMAVQKVAELQRLAPEPLPIHELPI---DELIAVEVRSDFVSPDPMDIVSKSELLETIDK 684 Query: 262 WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 L L K+ + L RFG+ EA TLE++G + G+TRERVRQI+V LR L+ + Sbjct: 685 LLSTLKPKEEQTLRLRFGIGVEEALTLEEIGCQYGVTRERVRQIEVAALRNLKHPRRMDA 744 Query: 322 LNI 324 Sbjct: 745 FAC 747 >UniRef50_A9G730 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G730_SORC5 Length = 463 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 132/229 (57%), Gaps = 1/229 (0%) Query: 95 IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 154 + +NLRLV AR+ +RG+ LLDLI+EGNLGLIRA EKFD RG+RFSTYA WWI+Q + Sbjct: 231 VRANLRLVAAAARQLRHRGVPLLDLIQEGNLGLIRAAEKFDYRRGYRFSTYAMWWIKQAL 290 Query: 155 ERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR 214 RA++ Q + IR+P+HI + L+ REL + E + EE+AE+ ++ + + Sbjct: 291 SRALLYQGQVIRVPVHIAETRRRALQARRELEQEHAREAAPEEVAERSGLSMEKLQALRE 350 Query: 215 LNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVL 274 + +D P+G D D A E P++ + + L L ++R+VL Sbjct: 351 MALPPVYLDAPVGDDDGARQGDFFASEGA-APDELLVHRRLHAQVSALLESLTPRERDVL 409 Query: 275 ARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 RFGL G + TL ++G ++RERVRQI+ L +LR + + Q L Sbjct: 410 RLRFGLDGGQPHTLAEIGGMFSVSRERVRQIEESALSKLRTLSRRQALE 458 >UniRef50_C7LZI2 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZI2_ACIFD Length = 302 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 95/258 (36%), Positives = 151/258 (58%), Gaps = 1/258 (0%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D+ +L+L ++ PL +A E+V A+R GD ++ M+ +NLRLVV ARRY +RG+ Sbjct: 35 DSIRLFLDDLAKHPLPSAAEQVELAKRVREGDEDAKAEMVAANLRLVVHWARRYQDRGVE 94 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 L DLI+EG GLIRAVEKFD RGF+FSTYATWW+RQ+++RA+ N + IRLP+ + Sbjct: 95 LADLIQEGTFGLIRAVEKFDWRRGFKFSTYATWWVRQSLQRAVHNHGQAIRLPMEAAERS 154 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 REL+ L P+ EEIA + ++ + + S+D +G + E +L Sbjct: 155 RRVDNVTRELAADLGRAPTEEEIAMAANLSASQLADVRHAARVVASLDQAVGPEGETSLG 214 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D++ + E+ + ++ + + + EL+ +R+V+ RFGL G A+LE R + Sbjct: 215 DLVVAQD-TSFEEEVDESISREMLRRAVEELDELERQVVTLRFGLQGDRPASLEATARIL 273 Query: 296 GLTRERVRQIQVEGLRRL 313 G+ R R+++ L +L Sbjct: 274 GIGPRRARRLEASALAKL 291 >UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderia RepID=A9ALE2_BURM1 Length = 525 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Query: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143 + + R M+E+NLRLV+ IAR+Y NRG+ L DL+++G +GL+RA+EKF+ RGF+FS Sbjct: 282 QQKVRDATRAMLEANLRLVLSIARKYLNRGVDLSDLVQDGCIGLMRAIEKFEYRRGFKFS 341 Query: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD 203 TYATWWIRQ I RA+ ++ RTIR+P+H+ + R A + +P+ E+A + Sbjct: 342 TYATWWIRQAIARAVADRARTIRVPVHVGDQHQRVRRQALRFRQRTGRQPTPAELAAETG 401 Query: 204 KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL 263 D + +L L S+DTPL D++ L+D++ DE P + M++ + L Sbjct: 402 LAEDKLRAILALPAEPVSLDTPLP-DADTGLVDLIEDETSASPFEQLAGTRMRECVRSLL 460 Query: 264 FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307 + + +VL RRFGL G E T + + ++ G++RERVRQI+ Sbjct: 461 RSVTPTEADVLRRRFGLGGTEPDTYDAIAKDAGMSRERVRQIEK 504 >UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7J7_9BACT Length = 428 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 92/258 (35%), Positives = 144/258 (55%), Gaps = 4/258 (1%) Query: 70 LLTAEE---EVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLG 126 L+T EE E+ R++MIE+NLRLV+ IA++Y NRGL DLI+EGNLG Sbjct: 163 LMTYEELTGEIRKLLEIHEELQNLRQKMIEANLRLVISIAQKYRNRGLPFNDLIQEGNLG 222 Query: 127 LIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELS 186 L+RA+EKFD G +FSTYA+WWI+ I R+I Q+R IR+P H+V +N + Sbjct: 223 LLRALEKFDFRLGNKFSTYASWWIKHNISRSIAEQSRVIRIPAHMVHAINSMTWAEQRFI 282 Query: 187 HKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA-LLDILADEKENG 245 EP +E+A L+ PV +S + +++ + S+ P+ + A L D++AD+ Sbjct: 283 QSHGREPEIDELAAVLEMPVARISAIRKMSCQTISLQAPVSSSEDGAMLEDLIADDSTAN 342 Query: 246 PEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQI 305 P + + + L L + ++++ RFGL G L D+ R LTRER+RQ+ Sbjct: 343 PVRDFARKILYDKLYEMLRTLPERDQQIIILRFGLFGQPCLPLVDISRRFNLTRERIRQL 402 Query: 306 QVEGLRRLREILQTQGLN 323 + + + LR + + L+ Sbjct: 403 EAKIIENLRSPAKLKYLD 420 >UniRef50_Q9ZSL6 Sigma-like factor n=2 Tax=Arabidopsis thaliana RepID=Q9ZSL6_ARATH Length = 419 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 133/246 (54%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 A L +R ++ RLVV IA Y +GL L DLI+EG++GL+R E+FDP+RG Sbjct: 169 ANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRG 228 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 ++ STY WWI+Q I RAI +++R ++LP + + + L+ KL +PS EEIA Sbjct: 229 YKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIA 288 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 E L+ V V + + S+D + L +I+ E PE+ + + MK I Sbjct: 289 EHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEI 348 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 + L L A++ VL FGL G + E++G+ + L+RERVRQI L++LR + Sbjct: 349 EQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNV 408 Query: 320 QGLNIE 325 L I Sbjct: 409 NDLKIY 414 >UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6FX97_9DELT Length = 421 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 96/265 (36%), Positives = 145/265 (54%), Gaps = 11/265 (4%) Query: 66 GYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNL 125 G P ++V + ALR S+ + +++NLRLVV IARR+ + + L DL++EGNL Sbjct: 159 GSRPFARYVQKVRSSGHALRW---SKNKFVKANLRLVVTIARRFDHGLMPLQDLVQEGNL 215 Query: 126 GLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAREL 185 GL++AV++FDP RG+RFSTYATWWIR I RA+ N+ RT+RLP H+ +L R REL Sbjct: 216 GLMKAVDRFDPTRGYRFSTYATWWIRHAINRALANKGRTVRLPAHVSADLQRLRRVTREL 275 Query: 186 SHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERI-TSVDTPLGGDSEKALLDILADEKEN 244 K P+ E++A+ V ++ +L S+D P D + LLD L D Sbjct: 276 EAKTGETPTPEQLAQAAGLSKTRVRKLSKLTLDPTVSLDAPSHDDDARGLLDRLEDASVP 335 Query: 245 GPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL-------GYEAATLEDVGREIGL 297 D + + + + L+ L + ++L RR+G+ +E TL +G L Sbjct: 336 VAADILEHQALNEHLRDALYNLQPIELDILKRRYGIATSEAESVDFEPMTLRQLGERHSL 395 Query: 298 TRERVRQIQVEGLRRLREILQTQGL 322 +RER+RQ+Q L +LR + L Sbjct: 396 SRERIRQLQERALTKLRREFARREL 420 >UniRef50_Q3AYF6 Possible type II alternative RNA polymerase sigma factor n=26 Tax=Cyanobacteria RepID=Q3AYF6_SYNS9 Length = 309 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 103/301 (34%), Positives = 156/301 (51%), Gaps = 36/301 (11%) Query: 57 ATQLYLGEIGYSPLLTAEEEVYFARRAL-----------------------------RGD 87 + +LGEIG LLT E+E+ R+ R Sbjct: 5 SLSAFLGEIGRHQLLTPEQELMLGRKVQAMVAITEPCLIAGGTGPSCEYNDNQRFVIRRG 64 Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 ++ +MI +NLRLVV +A+RY +GL LLDLI+EG LGL RAVEK+DP RG RFSTYA Sbjct: 65 ERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTYAY 124 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ + RA+ Q+RTIR+P+++ ++L + + + E++AE ++ P+ Sbjct: 125 WWIRQGLNRALSTQSRTIRIPVNVNEKLTKLRAAKARIMQRNGLTATGEQLAEFMNVPLT 184 Query: 208 DVSRML--RLNERITSVDTPLGGDSE-KALLDILADEKENGPEDTTQDDDMKQSIVKWLF 264 +V +L L S+ + S+ L+DIL ++ P + + + S+ L Sbjct: 185 EVEDLLACELRSVTVSLQGIVKSKSDPSELVDILPSDEIP-PMERAEIAERSASVWALLS 243 Query: 265 E--LNAKQREVLARRFGLLG-YEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 + L K+ +V+ RFGL G E TL +V R + +RE RQ+ LR+LR+ G Sbjct: 244 KANLTPKEHKVVTLRFGLDGTNEWRTLAEVARHMNCSREYCRQVVQRALRKLRKTGIQSG 303 Query: 322 L 322 L Sbjct: 304 L 304 >UniRef50_Q2T2N0 RNA polymerase sigma factor n=32 Tax=pseudomallei group RepID=Q2T2N0_BURTA Length = 483 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 135/226 (59%) Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 A+ RM E+NLRLV+ IAR+Y +RGL L DL++EGNLGL+RA+EKF+ RGF+FSTYATW Sbjct: 242 AATARMAEANLRLVLSIARKYASRGLDLADLLQEGNLGLLRAIEKFEYRRGFKFSTYATW 301 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RAI ++ RTIR+P+H+ E + A + + S E++E + Sbjct: 302 WIRQAISRAIADRARTIRVPVHVGDEARRVRKVADRIERRSGARASLAELSEATGLSAER 361 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 + +L L S++ PLG D + DI+ D D M + L ++A Sbjct: 362 LRAVLMLPREPRSLNAPLGDDDQAEFGDIVEDASTPSLFDALAQGQMCDVVTSLLKTMSA 421 Query: 269 KQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++ ++L RRFG+ G E + E + + G++RE++R+I+ L+ LR Sbjct: 422 QEADILRRRFGIGGDEPWSYEQIAAQAGVSREQIRRIEKRALQTLR 467 >UniRef50_A6F9J5 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70region 1.2 n=3 Tax=Moritella sp. PE36 RepID=A6F9J5_9GAMM Length = 284 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 110/262 (41%), Positives = 156/262 (59%), Gaps = 3/262 (1%) Query: 56 DATQLYLGEIGYS-PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 +A +Y+ ++ S LLT EEE A + GD +R+RMI+SNLRLV+ IA+RY + L Sbjct: 8 NALDVYMYQVNQSSKLLTKEEEYETAMASNEGDEKARQRMIQSNLRLVINIAKRYQHTSL 67 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 L+D+I+EGN GLI AVEKFD +GFRFSTYA WWI+ IER IMNQ+RTIR+PIHI K Sbjct: 68 PLVDIIQEGNTGLIHAVEKFDATKGFRFSTYAVWWIKNNIERFIMNQSRTIRVPIHIGKV 127 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL--GGDSEK 232 L+TARE L +AE L+ V+ +L S+D + DS Sbjct: 128 YKRILKTAREQELDLQCNHDVMTLAEFLEMQYAQVNEVLSYYFNEASLDKTIVTDRDSST 187 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 AL+D+L D P D +D D + + L L+ + R+++ RFGL + TL +G Sbjct: 188 ALVDMLEDYSICKPNDELEDADTLCYLNEVLGHLSERDRKIIELRFGLGEEDPLTLHVIG 247 Query: 293 REIGLTRERVRQIQVEGLRRLR 314 + ++RER+RQI L++++ Sbjct: 248 ERLSMSRERIRQIINLSLQKIQ 269 >UniRef50_B2KCU1 RNA polymerase sigma factor n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCU1_ELUMP Length = 380 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 100/272 (36%), Positives = 155/272 (56%), Gaps = 4/272 (1%) Query: 55 LDATQLYLGEIGYS-PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG 113 +D+ Y +I L+ EE +R +GD A+++RM+E NLRLV+ A+R+ + Sbjct: 5 VDSINQYFKKISEVSEDLSREEMEKLWKRIKKGDTAAKQRMMELNLRLVIPAAKRFMRKD 64 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 + LLDLIEEGNLGL++A+EKFDP +GFRFSTYA +WI Q I + I Q+ I++P H Sbjct: 65 IDLLDLIEEGNLGLLQAIEKFDPSKGFRFSTYAIYWIDQAIRKYIDEQSGAIKIPSHAWG 124 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR---LNERITSVDTPLGGDS 230 ++ + RT L L+ EPS E++ +LD + +L + I S+ +G + Sbjct: 125 DIKKWTRTWNALKDSLEREPSLTEMSRELDWSARKIKSILETINAAKGIDSLALAIGEED 184 Query: 231 EKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLED 290 E L D L D+ + P+D +++ L ELN + +E+L R GL E TL + Sbjct: 185 EVTLEDTLTDDGKGNPDDVFSRSSSNSALLAALEELNPRDKEILMMRNGLKTNEPMTLSE 244 Query: 291 VGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 V + +GL+RERVRQI+ + +R+ G+ Sbjct: 245 VSKIMGLSRERVRQIEERAISHIRKKAHKLGI 276 >UniRef50_Q3M2G3 Sigma-70 n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3M2G3_ANAVT Length = 314 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 94/300 (31%), Positives = 145/300 (48%), Gaps = 41/300 (13%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARR--------------------------------- 82 D+ +YL EI P+LT E+E+ AR+ Sbjct: 6 DSVGIYLREISKYPMLTPEQEITLARQVKQMTVVQQHKQVLEEQLHQQLNIQQLAADMGK 65 Query: 83 -------ALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 LR ++ +MI +NLRLVV IA++Y L LDL++EG++GL +AVE+FD Sbjct: 66 SETEVFQILRLGQKAKEKMIAANLRLVVAIAKKYRWSQLEFLDLVQEGSIGLQKAVERFD 125 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 P RG++FST A WWIRQ I +AI N++ TIR P H+ L + REL L EP+ Sbjct: 126 PNRGYKFSTCAYWWIRQEITKAIANKSTTIRTPSHMNDRLIKLKKVQRELVKILGREPNI 185 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 EIAE + + V L S+D P+G + E L+IL + P + + + Sbjct: 186 AEIAEFAELEPNQVRECLIAFRHPLSLDRPMGQEDEVDFLEILPADG-TSPNEYLDEGFL 244 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 +Q + L L Q++VL RFGL + + + + + + + +V Q + ++ L Sbjct: 245 RQDLANCLITLKPLQKQVLMLRFGLGSVDKLSTKQIAERLNIKQAKVGTTQKQAIKVLHR 304 >UniRef50_C6XTP2 RNA polymerase sigma factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XTP2_PEDHD Length = 286 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 85/274 (31%), Positives = 150/274 (54%) Query: 41 AEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR 100 +E + + T R D+ YL EI PLL AEEE+ +R GD + +R++ SNLR Sbjct: 1 MKEIRIERSITNRSQDSLARYLQEISKYPLLDAEEEIVLGKRIKEGDWDALQRLVSSNLR 60 Query: 101 LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 VV +A++Y + L+L DLI +GN+GLI+A E+FD +RGF+F +YA WWIRQ+I + + Sbjct: 61 FVVTVAKKYESPDLSLADLISDGNIGLIKAAERFDEKRGFKFISYAVWWIRQSILQGMNT 120 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERIT 220 R + LP+ + + R+ +L +L P EE+A + + V L ++ Sbjct: 121 SKRMVHLPMSQISGIRQVKRSEIKLEQELQRIPCREELAGFMKTAEEVVYDYLYISGSQV 180 Query: 221 SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL 280 S+D P G + I+ +K P+ + + + +++ + + + L+ ++R +L +G+ Sbjct: 181 SLDAPTEGQDGVLIPCIVQYDKGPAPDASLERESLEKDVQRMMDILSPRERSILFLAYGM 240 Query: 281 LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +D+ +GL+ E +R+ + + L RLR Sbjct: 241 GNNRPLQNDDISTLLGLSTETIRRSKNKALDRLR 274 >UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q7XXT0_ORYSJ Length = 564 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 137/249 (55%), Gaps = 2/249 (0%) Query: 75 EEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 +E +R G + + RM+ SN+RLV+ IAR + G+ L DLI+EG GLIR EKF Sbjct: 309 DERTLRKRLDHG-IYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKF 367 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D +GFRFSTY+ WWI+Q + +++ Q++ RLP H+V+ + L KL P+ Sbjct: 368 DASKGFRFSTYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPT 427 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 EEIA P+ V + L + S+D+ +G ++ ++ AD E+ Sbjct: 428 NEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIGS-TDMTYQEVTADPTAETAEEMLNRLS 486 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 MK+ + K L L ++R+V+ RFGL TL+++G +G++RER+RQI+ R+LR Sbjct: 487 MKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLR 546 Query: 315 EILQTQGLN 323 + L Sbjct: 547 SKKRVNALK 555 >UniRef50_A8ZW44 RNA polymerase sigma factor n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZW44_DESOH Length = 321 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 85/278 (30%), Positives = 149/278 (53%), Gaps = 10/278 (3%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALR-GDVASRRRMIESNLRLVVKIARRYGNRGL 114 D Q YL E+ LLT E+E+ +R GD + + SNLRLVVKIA + + Sbjct: 39 DPLQRYLKEVSRYNLLTREQEIELGKRVQEEGDEEAAYILATSNLRLVVKIALEFQRVWM 98 Query: 115 A-LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP-IHIV 172 LLDLI+EGN+GL+ AV+KFDP + +FS YA++WI+ I + +M+ R +++ Sbjct: 99 QNLLDLIQEGNIGLMHAVQKFDPYKNVKFSYYASFWIKAYILKFVMDNWRLVKIGTTQNQ 158 Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGDSE 231 ++L L+ ++ EP + +AE+L P +V M RL+ S+D P+ DS+ Sbjct: 159 RKLFFRLKKEKQALIDQGFEPRPKLLAERLGVPQKEVINMEQRLDMWDLSLDEPVSHDSD 218 Query: 232 KALLDILADEKENGPEDTTQDDDMKQSIVKWL----FELNAKQREVLARRFGLLGYEAAT 287 D+L ++ D ++Q + + L L ++R++ R + + T Sbjct: 219 TQKGDLLDINNTQPVDEQVGDKALRQLVGEHLVEFKKTLTPRERDIFKTR--IYTDQPMT 276 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 L+D+G ++RERVRQ++V ++++R+ + + + + Sbjct: 277 LQDIGERYAISRERVRQLEVNIIKKMRDFFKEKIPDFD 314 >UniRef50_B8DKK5 RNA polymerase sigma factor n=11 Tax=Proteobacteria RepID=B8DKK5_DESVM Length = 474 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 106/315 (33%), Positives = 167/315 (53%), Gaps = 15/315 (4%) Query: 12 NEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLL 71 ++D+ + + A E L GA+ R D+ LYL EI PLL Sbjct: 152 DDDSPPARHDAHDGAD-ASDESAGRHRSLPVLRPAMPGASTR--DSLHLYLREISRFPLL 208 Query: 72 TAEEEVYFARRAL-RGDVASRRRMIESNLRLVVKIARRYGNRGLA-LLDLIEEGNLGLIR 129 +EE ARR +GD + R++ S+LRLVVKIA + R + +LDLI+EGN+GL+R Sbjct: 209 KPDEEFDLARRVQEQGDSDAAFRLVTSHLRLVVKIAMDFQRRWMQNVLDLIQEGNVGLMR 268 Query: 130 AVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP-IHIVKELNVYLRTARELSHK 188 AV KFDPE+G +FS YA +WI+ I + IM+ R +++ ++L L R+ Sbjct: 269 AVNKFDPEKGIKFSYYAAFWIKAYILKFIMDNWRMVKIGTTQAQRKLFYNLNKERQRLIA 328 Query: 189 LDHEPSAEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGDSEK-ALLDILADEKENGP 246 ++P A ++E+L+ V+ V M RL+ S+D +G DS +D L G Sbjct: 329 QGYDPDATILSEKLNVTVEQVIEMEQRLDSSDMSLDITVGEDSGGATRMDFLP-ALGPGI 387 Query: 247 EDTTQDDDMKQSIVK----WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERV 302 E+T + ++ + + L +L+ K+ +L R LL + TL ++G + +TRERV Sbjct: 388 EETLANSEIARMVQDRVQTILPKLSDKEAYILQHR--LLSEQPVTLREIGEKYDITRERV 445 Query: 303 RQIQVEGLRRLREIL 317 RQI+ L++LR+ L Sbjct: 446 RQIEARLLQKLRDHL 460 >UniRef50_A6FGX1 DNA-directed RNA polymerase, sigma subunit n=1 Tax=Moritella sp. PE36 RepID=A6FGX1_9GAMM Length = 294 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 100/280 (35%), Positives = 152/280 (54%), Gaps = 3/280 (1%) Query: 51 TQRVLDATQLYLGEIGYS-PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY 109 + +A +Y E+ LL+ +EE A A GD A+R MI+SNLRLV+ +A++Y Sbjct: 2 SNITSNALDVYFDELQRFSQLLSKQEEYDTAVAAANGDKAARDTMIQSNLRLVLMVAKKY 61 Query: 110 GNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 N L ++I+EGN GL+ AV+KFDPERG RFSTYA WWIR IE+ IMN +RTIR+PI Sbjct: 62 QNYSLDWAEIIQEGNTGLMHAVDKFDPERGCRFSTYAVWWIRNNIEQYIMNHSRTIRIPI 121 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD 229 H+ + L+ + EL +D +IA++L V +L S+D + Sbjct: 122 HVTRVYKQILKASSELGLDVDTNEGITKIAQELKISPRKVLNILGHYFNEGSLDKEIHSG 181 Query: 230 SE--KALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 L D++A E + P+ + D + + L L + + ++ RFG G + + Sbjct: 182 DNLLATLKDLVAAEVDCQPDIRYEKCDYYEYMDALLEYLPVRSQNIIRLRFGFKGQDPMS 241 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEAL 327 L+ + + + ++RERVRQI GL ++RE L L E Sbjct: 242 LQAIAQLMDISRERVRQIIRNGLSQVREQLCANDLVKEDF 281 >UniRef50_C0R0V4 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0R0V4_BRAHW Length = 287 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 89/267 (33%), Positives = 151/267 (56%), Gaps = 2/267 (0%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY 109 + LY + LLT EEE+ +R GD +R ++I SNLR V+ IA++Y Sbjct: 11 TNTEEQNNISLYFADAKKEKLLTREEEIELTKRLKEGDAEARSKLIRSNLRFVITIAKQY 70 Query: 110 GNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 N GL L DLI EGNLGLI A ++FDP++G+ F +YA +WIRQ+I RAI ++R IRLP+ Sbjct: 71 KNSGLLLEDLISEGNLGLIIAADRFDPDKGYHFISYAVYWIRQSILRAINEKSRLIRLPL 130 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD 229 + +L R + +K + P E+A L+K +D+ ++ ++ S++ D Sbjct: 131 NKAMDLVDLERAVHQYYYKSGYTPDVNELATILNKDPNDILHIMSMSTEHISLEGEYNYD 190 Query: 230 SEKA-LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATL 288 K L+D + D+ E+T + ++ + + + L+ +++++ R+G+ E TL Sbjct: 191 GMKDRLIDTIEDKTSKNVEETAINKELMEELKTAIESLSDIEKQIINARYGI-DQERKTL 249 Query: 289 EDVGREIGLTRERVRQIQVEGLRRLRE 315 ++VG T+ER+RQI+ + LR++ Sbjct: 250 KEVGEMFSFTKERIRQIEKKALRKMHS 276 >UniRef50_A5GV05 Alternative RNA polymerase sigma factor, sigma-70 family n=1 Tax=Synechococcus sp. RCC307 RepID=A5GV05_SYNR3 Length = 293 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 26/287 (9%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRA-----------------LRGDVASRRRMIESN 98 D L IG LL+ EEEV R+ + + +R R++++N Sbjct: 7 DCFGWMLNGIGRHALLSPEEEVSLGRQVRAWQDHPGGPGQAPAAVQKRGLRARGRLVQAN 66 Query: 99 LRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAI 158 LRLVV +A++ RGLA+ DL++EG++GL RA EK+DP G+RFSTYA WWI+Q + RAI Sbjct: 67 LRLVVHLAKKQHLRGLAMEDLVQEGSIGLQRAAEKYDPSTGYRFSTYAYWWIKQALHRAI 126 Query: 159 MNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLN-- 216 QT +RLP + + L T + LS +L +P EE+AE + + +D + + R Sbjct: 127 QLQTPALRLPCRVSERLGRLRSTRQRLSQELGRQPRPEELAEAMGERIDQLQELERAQVI 186 Query: 217 ERITSVDTPLGGDSE-KALLDILADEKENGPEDTTQDDDMKQSIVKWLFE--LNAKQREV 273 R S+DTP+G D + +L+D+L D++ P D + + + + L L+ ++ V Sbjct: 187 SRGCSLDTPMGSDPDHGSLVDLLEDDR-TSPMDQLEQALRSEQLAELLSSAGLSEREATV 245 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 + R E + + G++RER RQ++ LR+LR + Q Sbjct: 246 VQAR---HSEEHIPYQQLADRFGISRERTRQLEHNALRKLRHCAEAQ 289 >UniRef50_C0ZIC6 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZIC6_BREBN Length = 314 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 152/280 (54%), Gaps = 9/280 (3%) Query: 53 RVLDATQLYLGEIGYSPLLTAEEEVY-FARRALRGDVASRRRMIESNLRLVVKIARRYGN 111 R + L+L + +P+L EEE+ R GD+ +R ++ + LR VV A R+ Sbjct: 31 RSDTSALLFLESVAATPMLDKEEELACLIRYQRDGDLEARETIVRAYLRYVVSTALRHLK 90 Query: 112 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 171 RG+ LDLI+EG +GL A++KFD RG R Y+ WWI Q I RAI ++ IR+P+H+ Sbjct: 91 RGMPFLDLIQEGTIGLFTAIDKFDVGRGVRLYHYSHWWISQAITRAINDKATLIRIPVHM 150 Query: 172 VKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGDS 230 +++ Y + L H L+ P +EIA LD P++ V + L L ++ S+D L + Sbjct: 151 HEQIRQYQKQVLHLVHALNRTPDRQEIAVLLDIPLEKVEAIELALMMKMESIDAELDSEK 210 Query: 231 EKALLD-------ILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGY 283 + + + D+ + +D + D++ + L L+ + +E+++ R+GL Sbjct: 211 WQTWHEDESLSYAEIMDDGLSSLDDWIEKVDLRSQMRAALDRLSPRAQEIISMRYGLYDD 270 Query: 284 EAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 + TLE+VG+ GLTRER+RQI+ + RLR + L Sbjct: 271 QVYTLEEVGKMFGLTRERIRQIEATTIDRLRTQKASHVLK 310 >UniRef50_C6JPD1 RNA polymerase sigma factor n=2 Tax=Fusobacterium RepID=C6JPD1_FUSVA Length = 260 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 97/260 (37%), Positives = 156/260 (60%), Gaps = 3/260 (1%) Query: 58 TQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALL 117 Y+ +I PLLT +EE A +A GD ++ +++ SNLRLV+ IAR+Y N G+ +L Sbjct: 4 ISEYIKDISTYPLLTPKEEREIAVKARSGDREAQEKLVTSNLRLVISIARKYTNMGIPIL 63 Query: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177 DLI+EGN+GLIRAVEK++P++ RFSTY+T+WI+Q+I R I + IR P ++ ++ Sbjct: 64 DLIQEGNMGLIRAVEKYEPDKNIRFSTYSTFWIKQSILRYITSSRGLIRFPSYVYDGISR 123 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 + ++ +K H PS +EI LD + R + + E+ + + G+ + I Sbjct: 124 MKKYVQDYKNKNSHCPSIDEICRSLDMKKKEAERYIDVLEKGNGIGNEMYGEMVEYCSSI 183 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 + D+ ED ++K + +L ++REVL R+GLL + TL ++G+ + L Sbjct: 184 IYDDTF---EDEVIAKSSNIDLMKKVNKLPPREREVLIYRYGLLDEKVLTLGEIGQRMNL 240 Query: 298 TRERVRQIQVEGLRRLREIL 317 T+ER+RQIQ+E + RLRE L Sbjct: 241 TKERIRQIQLEAIDRLREKL 260 >UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KLN9_CYAP7 Length = 308 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 91/241 (37%), Positives = 142/241 (58%), Gaps = 7/241 (2%) Query: 75 EEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 EE F G ++ ++++ NLRLV+ +A++Y RGL+ DL++EGN+GLIRA E F Sbjct: 69 EEAEFYLVYEEG-QQAKNQLVQGNLRLVINLAKKYLGRGLSFEDLLQEGNIGLIRAAELF 127 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 +P +G++FSTYA WWIRQ I RAI N RTIRLP+HI+ LN +T +L+ +L P+ Sbjct: 128 EPSKGYKFSTYAYWWIRQQIIRAINNSARTIRLPVHIIARLNRIKKTQHKLAAQLGRTPT 187 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 +EIA L ++ + + ++ S+ T + + L D++AD P D + Sbjct: 188 VQEIATSLQMSAQEIEKYREVAQKTISLSTIVDEQGRETLQDLIADPN-PQP-DFLERVF 245 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + I++ + L + +++L +R YE TLE +G L++ERVRQI + L RLR Sbjct: 246 SYEQILEKMETLPPRYQDILKKRI----YEEQTLEAIGTSTKLSKERVRQIFQKALSRLR 301 Query: 315 E 315 E Sbjct: 302 E 302 >UniRef50_A1TWY8 RNA polymerase, sigma 32 subunit, RpoH n=2 Tax=Marinobacter RepID=A1TWY8_MARAV Length = 330 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 95/301 (31%), Positives = 151/301 (50%), Gaps = 41/301 (13%) Query: 58 TQLYLGEIGYSPLLTAEEEVYFARRALR--------------------------GDVAS- 90 LY + LL+ +E AR+ +R GD + Sbjct: 23 VGLYFRDASRHDLLSETDERRLARKLIRSLRVIHTELALPEDTPQTLRDVVGSLGDACAF 82 Query: 91 --------------RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 R R+I+SNLRL V IARRYG+ G+A+ DLI++ N+GLI+AVE++DP Sbjct: 83 SARCRRAYHLALACRHRLIQSNLRLAVHIARRYGHHGIAMSDLIQDANVGLIKAVERYDP 142 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 +GFRFSTYA WWI + + R + R + P ++V+E+ + + L L EP+ Sbjct: 143 GKGFRFSTYAYWWISEEVRRCLQRGVRVVHTPENVVEEIRQLQKVSMRLHQSLGREPTQS 202 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 E+A +++ + + L R S D PL D L D L + P+ + D Sbjct: 203 ELAREMEATPSRIGELRALAAREVSTDVPLVEDGSVTLADSLDAGADTRPDQPFRARDRM 262 Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 + + + L+ ++R++L RR+GL E TL+ + ++GL+RERVRQI+ LR+L+ + Sbjct: 263 IRLERMMGALSDRERDILTRRYGLGLIEPETLQTISEQLGLSRERVRQIEKGALRKLQTL 322 Query: 317 L 317 Sbjct: 323 F 323 >UniRef50_A8Z659 RNA polymerase sigma factor rpoD n=5 Tax=Flavobacteriales RepID=A8Z659_SULMW Length = 351 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 87/314 (27%), Positives = 153/314 (48%), Gaps = 49/314 (15%) Query: 57 ATQLYLGEIGYSPLLTAEEEVYFARRALRG------------------------------ 86 + +L EI PLL+ EEE ++A+ A G Sbjct: 33 SLDKFLLEISNIPLLSQEEEFFWAKLARVGYIYNSEIESILKKFKIFKKLKKLNKLKKLK 92 Query: 87 ------------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLI 128 + ++++NLR V+ IA++Y N+GL+L DLI EGN GLI Sbjct: 93 KIKKLTAVLIKKFDKKGIKKYALDNLVKANLRFVISIAKQYQNQGLSLSDLINEGNFGLI 152 Query: 129 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHK 188 + + +FD +GF+ +Y WWIRQ+I +AI ++ R +R P + + N +T +L K Sbjct: 153 KGINRFDERKGFKCISYCVWWIRQSILQAISDKARCVRYPTNKLAFYNKVNKTYSKLEQK 212 Query: 189 LDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPED 248 L PS + I++ L+ DV L + + TS+D PLG L D++ ++ + Sbjct: 213 LKMPPSIKYISDYLNVSEKDVEEALINSIKHTSLDAPLGEGDNSNLYDVIKIDESPKTDH 272 Query: 249 TTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVE 308 + + + ++Q I L L+ ++ +++ +GL + LE + + LTRER RQI++ Sbjct: 273 SLEKESLQQDIKILLETLSERESQIITLHYGLGCFS-MNLEKIAYLLKLTRERCRQIEMH 331 Query: 309 GLRRLREILQTQGL 322 ++RL++ + + L Sbjct: 332 AIKRLKKSSRKEIL 345 >UniRef50_Q1MQR0 RNA polymerase sigma factor n=5 Tax=Desulfovibrionaceae RepID=Q1MQR0_LAWIP Length = 385 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 102/328 (31%), Positives = 161/328 (49%), Gaps = 26/328 (7%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 +S + + DL ED+E DE G E ++ T D+ QL Sbjct: 65 LSSSEDLLCDLIEDSELDEMGFETVVSSQ----------------VTLSTTTATRDSLQL 108 Query: 61 YLGEIGYSPLLTAEEEVYFARRALR-GDVASRRRMIESNLRLVVKIARRYGNRGLA-LLD 118 YL E+ P+L EEE+ A+ + G + R+I S+LRLVVKIA + R + +LD Sbjct: 109 YLREVSRFPMLKPEEELRLAQDVQKKGCSKAAFRLISSHLRLVVKIAMDFQRRWMQNVLD 168 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP-IHIVKELNV 177 LI+EGN+GL+RAV KFDP++G +FS YA +WIR I + IM+ R +++ ++L Sbjct: 169 LIQEGNVGLMRAVNKFDPDKGIKFSYYAAFWIRAYILKFIMDNWRMVKIGTTQAQRKLFY 228 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGD-SEKALL 235 L R+ +P +A +L + + M RL+ S+D +G + + + Sbjct: 229 NLNRERQKLLAEGFDPDTSSLALRLGVGEEQIIEMQQRLDASDMSLDVTVGEETGNASRI 288 Query: 236 DILADEKENGPEDTTQDD---DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 D L E + ++ I L L+ K+ +L R LL + TL ++G Sbjct: 289 DFLPAINPGIEESLAGQEIAILLQDRIKDILPLLSEKEVYILHNR--LLTDDPVTLREIG 346 Query: 293 REIGLTRERVRQIQVEGLRRLREILQTQ 320 + +TRERVRQ++ L++LR L Q Sbjct: 347 EKYSVTRERVRQLEARLLQKLRTHLSRQ 374 >UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TX3_RHOFD Length = 726 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 94/309 (30%), Positives = 162/309 (52%), Gaps = 6/309 (1%) Query: 16 EFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEE 75 E + E+ L+ D L+ + S+ L ++ +L E+ L +E Sbjct: 297 ESTDELSELLSNAELLSGLDFDGALSSDGWNSRRKALASLGLSRGFLLELADFEQLEVQE 356 Query: 76 EVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 +A++ +R +M+ +NL+LV+ IA++Y G L DL++EGN+GLI+AV+++D Sbjct: 357 SAIEFSQAMQAYRQARDQMVIANLKLVLFIAKKYLYSGQPLDDLLQEGNIGLIKAVDRYD 416 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 RGF+ STYATWWIRQ + R + ++++TIRLP+H+ + A + P+ Sbjct: 417 WRRGFKLSTYATWWIRQQVGRYVADKSKTIRLPVHVYVKTQQIAHAAHAIELATGRMPTI 476 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEK--ENGPEDTTQDD 253 EEIA++++ P V+ + P+ +L+ I A + P D D Sbjct: 477 EEIAKKMEMPASKVAPLALAIPEPL----PIHDVDVDSLIAIDAQDNYVARDPMDIVSDS 532 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 + SI ++L L K +VL RFG+ +EA TLE++G + +TRER+RQI+ + + L Sbjct: 533 QLIGSIDRFLATLKPKDEQVLRLRFGIGAHEAMTLEEIGTRLEVTRERIRQIEAKAICHL 592 Query: 314 REILQTQGL 322 + + + L Sbjct: 593 KHPARLERL 601 Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 6/86 (6%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQ------GATQRVLDATQLYLGEIGYS 68 AE D+ +++ + EE+ +++ +R D ++Y E + Sbjct: 139 AETDDRFEYCTPDESFEVVVAPEMTPDEEDTVTEALAFIDNLAERRNDPLRIYQKEFQNA 198 Query: 69 PLLTAEEEVYFARRALRGDVASRRRM 94 LLTA+EEV + RG + + Sbjct: 199 TLLTADEEVALGQGMERGVQQALDAL 224 >UniRef50_C7LZN3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZN3_ACIFD Length = 294 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 102/281 (36%), Positives = 141/281 (50%), Gaps = 14/281 (4%) Query: 48 QGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA-------------SRRRM 94 G + LD + L LL +EEV + A +R R Sbjct: 2 SGVSPEALDGARAVLARGRRGRLL-PDEEVALSIVLQEAQEAEDVPPDVAAVVQAARERF 60 Query: 95 IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 154 +E N+ LVV IARRY G++L DL++EG +GL+RA++ +D RGFRFSTYATWWIRQ I Sbjct: 61 VEGNMGLVVSIARRYVQPGISLDDLVQEGTIGLLRAIDLYDGRRGFRFSTYATWWIRQAI 120 Query: 155 ERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR 214 +A+ R + LP I EL REL L +PS E+A V + Sbjct: 121 AQALTRTRRDVVLPRGIAAELARVEVQRRELEQALGRQPSMAELAAASGIDELRVRELQG 180 Query: 215 LNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVL 274 + S+D +G + + L DI+ D E+T + D++ I L L ++REVL Sbjct: 181 YARSVLSLDQAVGEERDVTLADIVPDRDAEPIEETIEHADLRTVIAGALAHLEPREREVL 240 Query: 275 ARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 A RFGL G E +LED G+ RER+RQI+ + RLR Sbjct: 241 AFRFGLEGNEPHSLEDAAAYFGIARERIRQIEARAIARLRR 281 >UniRef50_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella patens RepID=A9SW01_PHYPA Length = 677 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 94/319 (29%), Positives = 157/319 (49%), Gaps = 50/319 (15%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA------------------------ 89 V D YL EI LLT +EEV+ +++ G Sbjct: 353 VQDYLTTYLREITKINLLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHM 412 Query: 90 ----------------SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 +R +M+ +NLRLVV +A++Y + GL + DLI+EG++GL+R VEK Sbjct: 413 NLSVGDLVRKLGEAEWARDKMVMANLRLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVEK 472 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 FD RG++ STY WWIRQ + RAI + +RT+RLP+H+ L + L + Sbjct: 473 FDHTRGYKLSTYVHWWIRQGVTRAIADHSRTVRLPVHVHDTLGRIRKAKSTLLSE-GCTA 531 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLG-----GDSEKALLDILADEK-ENGPE 247 S +EI+E + + L++ +++ S+D +G + L ++AD EN P Sbjct: 532 SVQEISEATNLTGTKIKNTLQVTKKLVSLDKEIGRNTLQSGDGETLHSLVADRDIENQPW 591 Query: 248 DTTQDDDMKQSIVKWL-FELNAKQREVLARRFGLL--GYEAATLEDVGREIGLTRERVRQ 304 + MK + K L +L ++R+++ +G+ +LE + G++RERVRQ Sbjct: 592 TIVERMLMKDDVDKLLTSQLGPRERDIVRLHYGVGREDGSVMSLESISYRYGVSRERVRQ 651 Query: 305 IQVEGLRRLREILQTQGLN 323 ++ +R+L+ + QGL+ Sbjct: 652 LETAAMRKLQIKSREQGLD 670 >UniRef50_C8QXR7 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXR7_9DELT Length = 386 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 95/333 (28%), Positives = 163/333 (48%), Gaps = 11/333 (3%) Query: 6 LKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEI 65 L D E ++ E+F +++ + E ++ S A YL EI Sbjct: 51 LMKKDDPEILPPEDGEAELFGDESAADGETAEFHPLVTLDDSANLPVVGNAALHRYLQEI 110 Query: 66 GYSPLLTAEEEVYFARRALR-GDVASRRRMIESNLRLVVKIARRYGNRGLA-LLDLIEEG 123 LL+ E AR GD + +++ +NLRLVVK+A + + LDLI+EG Sbjct: 111 SQYRLLSRAETDELARLFKETGDPEAAYKLVTANLRLVVKVAMDFQKYWMQNFLDLIQEG 170 Query: 124 NLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP-IHIVKELNVYLRTA 182 N+GL++AV+KFDP R +FS YA +WIR I + IM+ R +++ ++L L Sbjct: 171 NIGLVQAVKKFDPYRQVKFSYYAAYWIRAYILKFIMDNWRLVKIGTTQAQRKLFFSLNKE 230 Query: 183 RELSHKLDHEPSAEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGDSEKALLDILADE 241 ++L +P + +A++L+ +V M R++ S+++P+ DS D L Sbjct: 231 KKLLESQGFKPEPKLLAQRLNVKESEVIEMSQRMDNWDMSLESPMREDSGDERKDFLP-V 289 Query: 242 KENGPEDTTQDDDMKQSIVKWLF----ELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 E+ D++++ + L LN K+ +L R LL E ATL+++ + Sbjct: 290 AGPSVEERVAADEVREWMAGILDKMRRTLNEKELAILRER--LLSDEPATLQEIADRFAI 347 Query: 298 TRERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 +RERVRQI+ L+++R L+ + +I+ E Sbjct: 348 SRERVRQIEANLLKKMRTYLENEVPDIKEFLDE 380 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia ... 386 e-106 UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia R... 382 e-105 UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacte... 381 e-104 UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmic... 380 e-104 UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacter... 379 e-103 UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 378 e-103 UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria Re... 378 e-103 UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermot... 377 e-103 UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria Re... 376 e-103 UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacter... 376 e-103 UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella ... 373 e-102 UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacter... 366 e-100 UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Prote... 363 5e-99 UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria Rep... 363 5e-99 UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actino... 358 2e-97 UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Strep... 357 2e-97 UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexac... 356 6e-97 UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi... 356 6e-97 UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter ... 354 2e-96 UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacter... 350 3e-95 UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 348 2e-94 UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria R... 347 5e-94 UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium ... 345 1e-93 UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 T... 345 2e-93 UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 344 2e-93 UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium ... 344 2e-93 UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria Rep... 343 5e-93 UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD su... 340 3e-92 UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi ... 338 2e-91 UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister in... 338 2e-91 UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmatac... 337 4e-91 UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 337 4e-91 UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria Re... 337 4e-91 UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacte... 336 6e-91 UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteo... 336 8e-91 UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphapr... 335 1e-90 UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicro... 334 2e-90 UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacter... 334 2e-90 UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellul... 334 3e-90 UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 334 3e-90 UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothr... 334 3e-90 UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria Re... 334 3e-90 UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea... 333 4e-90 UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellu... 333 4e-90 UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 333 5e-90 UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Prote... 331 2e-89 UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 331 2e-89 UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/V... 331 3e-89 UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteo... 331 3e-89 UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteo... 331 3e-89 UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicro... 330 3e-89 UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci R... 330 3e-89 UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae ... 330 4e-89 UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Prote... 330 4e-89 UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteri... 330 5e-89 UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia bal... 330 6e-89 UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes... 329 7e-89 UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium ... 329 8e-89 UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 329 8e-89 UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 329 1e-88 UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomyceta... 328 1e-88 UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogace... 328 1e-88 UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. ... 328 2e-88 UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 328 2e-88 UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomyceta... 328 2e-88 UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacter... 328 2e-88 UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular or... 328 2e-88 UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 327 5e-88 UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptospora... 327 5e-88 UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacter... 327 5e-88 UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily... 327 5e-88 UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamy... 326 6e-88 UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi ... 326 8e-88 UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicro... 326 9e-88 UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsu... 325 1e-87 UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 325 1e-87 UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E... 325 2e-87 UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 325 2e-87 UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteob... 324 2e-87 UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 324 2e-87 UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellul... 324 3e-87 UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteo... 323 4e-87 UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermob... 323 4e-87 UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi ... 322 8e-87 UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivi... 322 1e-86 UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasma... 322 2e-86 UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacter... 321 2e-86 UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 320 3e-86 UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobaci... 319 7e-86 UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromo... 319 8e-86 UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia Re... 318 1e-85 UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax... 318 2e-85 UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 316 6e-85 UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacter... 316 6e-85 UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia Re... 316 6e-85 UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacte... 316 7e-85 UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 315 1e-84 UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyano... 314 3e-84 UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria Re... 314 3e-84 UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma ... 313 4e-84 UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema Re... 313 4e-84 UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteob... 313 6e-84 UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 312 8e-84 UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiell... 312 1e-83 UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrel... 312 2e-83 UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistip... 312 2e-83 UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 311 2e-83 UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter ... 310 6e-83 UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundu... 309 7e-83 UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcale... 308 1e-82 UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacter... 308 1e-82 UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteri... 308 1e-82 UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella... 308 1e-82 UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacter... 308 2e-82 UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacteri... 308 2e-82 UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 308 2e-82 UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia... 308 2e-82 UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 308 2e-82 UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacte... 308 2e-82 UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria Rep... 307 3e-82 UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter ... 307 3e-82 UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 307 4e-82 UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobact... 307 5e-82 UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily... 307 5e-82 UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus... 306 7e-82 UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellul... 306 7e-82 UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia... 306 9e-82 UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 305 1e-81 UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma h... 305 1e-81 UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacte... 305 2e-81 UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily... 303 4e-81 UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 303 8e-81 UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium ... 302 1e-80 UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilo... 301 3e-80 UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes R... 300 3e-80 UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteob... 300 4e-80 UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacter... 300 4e-80 UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycet... 300 6e-80 UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 298 1e-79 UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycopla... 298 2e-79 UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacteri... 298 2e-79 UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 T... 298 2e-79 UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 297 3e-79 UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragmen... 296 6e-79 UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilo... 296 6e-79 UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsi... 296 7e-79 UniRef50_Q3JAH2 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 296 7e-79 UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmiu... 296 8e-79 UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea s... 295 1e-78 UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 ... 295 1e-78 UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobi... 294 2e-78 UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepI... 294 3e-78 UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 293 5e-78 UniRef50_B2VA41 RNA polymerase sigma factor n=2 Tax=Hydrogenothe... 293 6e-78 UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 293 6e-78 UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus ... 293 6e-78 UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus P... 293 6e-78 UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, s... 293 6e-78 UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochlori... 293 7e-78 UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 293 7e-78 UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=... 293 8e-78 UniRef50_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydro... 292 1e-77 UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 T... 292 1e-77 UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasm... 292 1e-77 UniRef50_B4U904 RNA polymerase sigma factor n=5 Tax=Aquificales ... 291 2e-77 UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderi... 291 2e-77 UniRef50_B5ES65 RNA polymerase sigma factor n=2 Tax=Acidithiobac... 291 2e-77 UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 291 2e-77 UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular ... 291 2e-77 UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, s... 291 3e-77 UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosipho... 291 3e-77 UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece R... 290 3e-77 UniRef50_A8ZPW9 RNA polymerase sigma-70 factor, putative n=10 Ta... 290 6e-77 UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteri... 290 6e-77 UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromona... 290 6e-77 UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 T... 289 1e-76 UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 288 2e-76 UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobact... 287 4e-76 UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 286 5e-76 UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma m... 286 6e-76 UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID... 286 6e-76 UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroi... 286 6e-76 UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria Rep... 286 9e-76 UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily... 285 1e-75 UniRef50_Q21UR2 RNA polymerase sigma factor n=5 Tax=Burkholderia... 285 2e-75 UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 285 2e-75 UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 285 2e-75 UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 283 4e-75 UniRef50_B1ZRN1 RNA polymerase sigma factor n=1 Tax=Opitutus ter... 283 5e-75 UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter... 283 6e-75 UniRef50_C1DVG2 RNA polymerase sigma factor n=4 Tax=Hydrogenothe... 282 9e-75 UniRef50_Q4A5V6 RNA polymerase sigma factor n=3 Tax=Mycoplasma R... 282 1e-74 UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacteriu... 282 1e-74 UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomyceta... 282 1e-74 UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 281 2e-74 UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 ... 281 2e-74 UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 280 4e-74 UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus ... 280 4e-74 UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31... 280 6e-74 UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacter... 280 7e-74 UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium ca... 278 2e-73 UniRef50_Q39477 RNA polymerase sigma factor (Fragment) n=1 Tax=C... 278 2e-73 UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera... 278 2e-73 UniRef50_C6Y0F4 RNA polymerase sigma factor, sigma-70 family n=1... 276 5e-73 UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 276 5e-73 UniRef50_D1AXM9 RNA polymerase sigma factor n=5 Tax=Fusobacteria... 275 2e-72 UniRef50_A7MZX8 RNA polymerase sigma factor n=1 Tax=Vibrio harve... 274 3e-72 UniRef50_Q2JMC5 RNA polymerase sigma factor n=2 Tax=Synechococcu... 273 5e-72 UniRef50_Q9ZSL6 Sigma-like factor n=2 Tax=Arabidopsis thaliana R... 273 6e-72 UniRef50_A5UVI3 RNA polymerase sigma factor n=1 Tax=Roseiflexus ... 273 7e-72 UniRef50_D0YYF5 RNA polymerase sigma factor RpoS n=1 Tax=Photoba... 272 1e-71 UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis ... 272 1e-71 UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium o... 270 4e-71 UniRef50_A6ECH2 RNA polymerase sigma factor n=2 Tax=Pedobacter s... 270 4e-71 UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 270 4e-71 UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderia... 269 1e-70 UniRef50_A9G730 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 268 1e-70 UniRef50_A4AF82 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 268 2e-70 UniRef50_Q1PZV7 RNA polymerase sigma factor n=1 Tax=Candidatus K... 268 2e-70 UniRef50_Q84LK8 Os08g0242800 protein n=5 Tax=Poaceae RepID=Q84LK... 268 2e-70 UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q... 268 2e-70 UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax f... 267 4e-70 UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium o... 267 4e-70 UniRef50_C7LZI2 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 266 6e-70 UniRef50_Q5DYR1 RNA polymerase sigma factor n=3 Tax=Aliivibrio R... 266 8e-70 UniRef50_Q3LW61 Sigma 2 transcription factor n=1 Tax=Bigelowiell... 265 1e-69 UniRef50_Q3AYF6 Possible type II alternative RNA polymerase sigm... 265 2e-69 UniRef50_A6D4Y7 RNA polymerase sigma factor n=1 Tax=Vibrio shilo... 264 3e-69 UniRef50_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus K... 263 4e-69 UniRef50_B2KCU1 RNA polymerase sigma factor n=1 Tax=Elusimicrobi... 263 5e-69 UniRef50_Q6MI57 RNA polymerase sigma factor n=1 Tax=Bdellovibrio... 261 2e-68 UniRef50_C0R0V4 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 261 3e-68 UniRef50_C0ZIC6 RNA polymerase sigma factor n=1 Tax=Brevibacillu... 260 4e-68 UniRef50_A8Z659 RNA polymerase sigma factor rpoD n=5 Tax=Flavoba... 260 5e-68 UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderi... 260 6e-68 UniRef50_Q2T2N0 RNA polymerase sigma factor n=32 Tax=pseudomalle... 260 6e-68 UniRef50_Q3M2G3 Sigma-70 n=1 Tax=Anabaena variabilis ATCC 29413 ... 260 7e-68 UniRef50_D1HUY6 Whole genome shotgun sequence of line PN40024, s... 260 7e-68 UniRef50_C8QXR7 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 259 1e-67 UniRef50_A6FGX1 DNA-directed RNA polymerase, sigma subunit n=1 T... 258 1e-67 UniRef50_C4V1Y7 RNA polymerase sigma factor n=1 Tax=Selenomonas ... 258 1e-67 UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis... 258 1e-67 UniRef50_UPI0001BC2D98 RNA polymerase, sigma 32 subunit, RpoH n=... 257 3e-67 UniRef50_Q8LK21 Chloroplast RNA polymerase sigma factor, c n=4 T... 257 4e-67 UniRef50_B8DKK5 RNA polymerase sigma factor n=11 Tax=Proteobacte... 257 5e-67 UniRef50_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella... 256 5e-67 UniRef50_A8L2N7 RNA polymerase, sigma 28 subunit, FliA/WhiG fami... 256 5e-67 UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece s... 256 7e-67 UniRef50_A6F9J5 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 reg... 256 8e-67 UniRef50_C6XTP2 RNA polymerase sigma factor n=1 Tax=Pedobacter h... 256 8e-67 Sequences not found previously or not previously below threshold: >UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0D3_ABIDE Length = 409 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 131/319 (41%), Positives = 199/319 (62%), Gaps = 1/319 (0%) Query: 5 TLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEEL-LSQGATQRVLDATQLYLG 63 K++D E + D+ + P +D A+ E+ + D ++YL Sbjct: 85 YEKIYDYLESNGITIMNINDIDDDLFDDTLPEVDDEADLEIGDDITLSIMSDDPVKIYLK 144 Query: 64 EIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEG 123 EIG PLL+ +EEV A++ GD + R+ ESNLRLVV IA++Y RGL+ LDLI+EG Sbjct: 145 EIGNYPLLSMDEEVELAKKIAEGDQYATDRLTESNLRLVVSIAKKYVGRGLSFLDLIQEG 204 Query: 124 NLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAR 183 NLGLI+AV+KFD +G++FSTYATWWIRQ I R+I +Q+RTIR+P+H+ + +N R +R Sbjct: 205 NLGLIKAVDKFDYSKGYKFSTYATWWIRQAITRSIADQSRTIRIPVHMSEVINKAYRISR 264 Query: 184 ELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKE 243 L +L EP+ EEIA++++ PV+ V +++++ S+DTP+G + + L D + D+ Sbjct: 265 SLLQELGREPTEEEIAKEMNLPVEKVREIMKISADPISLDTPIGEEDDSHLGDFIKDDTI 324 Query: 244 NGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVR 303 GPED ++ I K L L+ +++ VL RFGLL TLE+VG+E +TRER+R Sbjct: 325 MGPEDAAAYTMLQDQIQKLLTTLSEREQRVLILRFGLLDGRTRTLEEVGKEFNVTRERIR 384 Query: 304 QIQVEGLRRLREILQTQGL 322 QI+ + LR+LR + + L Sbjct: 385 QIEAKALRKLRHPNRARML 403 >UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia RepID=Q3AEW8_CARHZ Length = 370 Score = 382 bits (982), Expect = e-105, Method: Composition-based stats. Identities = 127/334 (38%), Positives = 202/334 (60%), Gaps = 13/334 (3%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQ-------- 52 + N+ ++ +L E G+EV E +E + ++ + + + Sbjct: 35 VDINSEQIDELYE--YLANQGIEVVPEIPELELDSINSLDDDVDFKPSDIDEVDLDLTIP 92 Query: 53 ---RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY 109 + D ++YL EIG PLLT EEE+ A+R GD ++R++ E+NLRLVV IA+RY Sbjct: 93 EGIAIDDPVRMYLKEIGRVPLLTPEEEIELAKRKEEGDEEAKRKLAEANLRLVVSIAKRY 152 Query: 110 GNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 RG+ LDLI+EGNLGL++AVEKFD +G++FSTYATWWIRQ I RAI +Q RTIR+P+ Sbjct: 153 VGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPV 212 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD 229 H+V+ +N +R +R L +L EP+ EEIA+++ D V ++++ + S++TP+G + Sbjct: 213 HMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMKIAQEPVSLETPIGEE 272 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLE 289 + L D + D P + +++ + + L L ++++VL RFGL A TLE Sbjct: 273 EDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLE 332 Query: 290 DVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 +VG+ G+TRER+RQI+ + LR+LR +++ L Sbjct: 333 EVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLK 366 >UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacteria RepID=RPSD2_BACSP Length = 377 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 129/330 (39%), Positives = 202/330 (61%), Gaps = 11/330 (3%) Query: 3 QNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEEL---------LSQGATQR 53 Q+ ++ + E + G+EV +E + + LS + Sbjct: 46 QDPEQMDEFYE--HLGDLGIEVVNENDEEVSNLRQGEDHDGNDNDDFNFDDDLSLPPGIK 103 Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG 113 + D ++YL EIG PLL+A++EV A+R + GD ++RR+ E+NLRLVV IA+RY RG Sbjct: 104 INDPVRMYLKEIGRVPLLSADDEVELAKRIMNGDEEAKRRLAEANLRLVVSIAKRYVGRG 163 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 + LDLI+EGN+GLI+AVEKFD +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ Sbjct: 164 MLFLDLIQEGNMGLIKAVEKFDHNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVE 223 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 +N +R +R+L +L EP+ EEIA +++ V+ V ++++ + S++TP+G + + Sbjct: 224 TINKLIRVSRQLLQELGREPTPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSH 283 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 L D + D++ P D + +K+ + L L ++ VL RFGL TLE+VG+ Sbjct: 284 LGDFIEDQEALTPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGK 343 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQGLN 323 G+TRER+RQI+ + LR+LR +++ L Sbjct: 344 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 373 >UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmicutes RepID=RPOD_STAAN Length = 368 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 126/320 (39%), Positives = 199/320 (62%), Gaps = 6/320 (1%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLG 63 ++ ++ D + ++N + + +EK ++ LS ++ D ++YL Sbjct: 51 DSDQMDDFFDQ--LNDNDISLVNEK----DSSDTDEKLNPSDLSAPPGVKINDPVRMYLK 104 Query: 64 EIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEG 123 EIG LL+A+EE+ A+R +GD ++ R+ E+NLRLVV IA+RY RG+ LDLI+EG Sbjct: 105 EIGRVNLLSAQEEIELAKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEG 164 Query: 124 NLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAR 183 N+GLI+AVEKFD +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R R Sbjct: 165 NMGLIKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQR 224 Query: 184 ELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKE 243 +L L +P+ EEI E++D P + V +L++ + S++TP+G + + L D + D++ Sbjct: 225 QLLQDLGRDPAPEEIGEEMDLPAEKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEA 284 Query: 244 NGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVR 303 P D + +K+ + L L ++ VL RFGL TLE+VG+ G+TRER+R Sbjct: 285 QSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIR 344 Query: 304 QIQVEGLRRLREILQTQGLN 323 QI+ + LR+LR +++ L Sbjct: 345 QIEAKALRKLRHPSRSKRLK 364 >UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacteria RepID=RPOD_LISMO Length = 374 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 125/310 (40%), Positives = 191/310 (61%) Query: 14 DAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTA 73 +A + + ++ E + + + +S ++ D ++YL EIG LLTA Sbjct: 61 EAGIEVSDDADDEDPDETELVKEETESFDLTDMSVPPGVKINDPVRMYLKEIGRVDLLTA 120 Query: 74 EEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 +EE+ A+R GD+ ++ R+ E+NLRLVV IA+RY RG+ LDLI+EGN+GL++AVEK Sbjct: 121 DEEIALAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEK 180 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 FD +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R R L L +P Sbjct: 181 FDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDP 240 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253 S EEI E++D P + V +L++ + S++TP+G + + L D + D+ P D + Sbjct: 241 SPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYE 300 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 +K+ + L L ++ VL RFGL TLE+VGR G+TRER+RQI+ + LR+L Sbjct: 301 LLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKL 360 Query: 314 REILQTQGLN 323 R +++ L Sbjct: 361 RHPSRSKQLK 370 >UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=B8FTY1_DESHD Length = 372 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 131/304 (43%), Positives = 197/304 (64%) Query: 20 NGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYF 79 +E ++ + + D + + LS + D ++YL EIG PLLTAEEE+ Sbjct: 65 EALEKVTDEIPDDVDDPDVEEEVDVDLSIPEGVGIDDPVRMYLKEIGRVPLLTAEEEIEL 124 Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 A+R +GD +++RR+ E+NLRLVV IA+RY RG+ LDLI+EGNLGLI+AVEKFD +G Sbjct: 125 AKRMEQGDESAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYVKG 184 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 F+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R +R+L +L EP+ EEIA Sbjct: 185 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIA 244 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 Q+D V+ V ++++ + S++TP+G + + L D + DE P + +K+ + Sbjct: 245 VQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQL 304 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 + L L ++ +VL RFGL TLE+VG+E G+TRER+RQI+ + LR+LR ++ Sbjct: 305 EEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRS 364 Query: 320 QGLN 323 + L Sbjct: 365 KKLK 368 >UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria RepID=A5IMD4_THEP1 Length = 407 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 123/282 (43%), Positives = 184/282 (65%), Gaps = 1/282 (0%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY 109 + V D+ ++YL EIG PLLT +E ARRA GD ++ ++I SNLRLVV IA+RY Sbjct: 123 DSSNVRDSIKMYLKEIGKIPLLTPAQERELARRAQMGDKKAKEKLITSNLRLVVSIAKRY 182 Query: 110 GNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 RGL+ DLI+EGN+GL++AVEKFD +G++FSTYATWWIRQ I RAI +Q RTIR+P+ Sbjct: 183 MGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPV 242 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD 229 H+V+ +N R RE K EPS EE+A+ + KP + + +L + S+++P+G D Sbjct: 243 HMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLESPIGED 302 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLE 289 + ++ D +AD+ P+ M++ + K L L+ ++ VL R+GLL + TLE Sbjct: 303 EDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLE 362 Query: 290 DVGREIGLTRERVRQIQVEGLRRLREILQTQGLN-IEALFRE 330 +VG+ +TRER+RQI+V+ LR+LR +++ L + +L E Sbjct: 363 EVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSLMDE 404 >UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermotogaceae RepID=RPOD_THEMA Length = 399 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 130/323 (40%), Positives = 202/323 (62%), Gaps = 7/323 (2%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQG------ATQRVLDATQLYLGEIGYS 68 E +++G+ + + + E+ + +D E E L + + V D+ ++YL EIG Sbjct: 74 EELEKHGINIVENEPEEEEISASSDEQELEELLEKESPEIHDSSNVRDSIKMYLKEIGKI 133 Query: 69 PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLI 128 PLLT +E ARRA GD ++ ++I SNLRLVV IA+RY RGL+ DLI+EGN+GL+ Sbjct: 134 PLLTPAQERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLL 193 Query: 129 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHK 188 +AVEKFD +G++FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N R RE K Sbjct: 194 KAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQK 253 Query: 189 LDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPED 248 EPS EE+A+ + KP + + +L + S+++P+G D + ++ D +AD+ P+ Sbjct: 254 HGEEPSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKK 313 Query: 249 TTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVE 308 M++ + K L L+ ++ VL R+GLL + TLE+VG+ +TRER+RQI+V+ Sbjct: 314 EAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVK 373 Query: 309 GLRRLREILQTQGLN-IEALFRE 330 LR+LR +++ L + +L E Sbjct: 374 ALRKLRHPSRSKYLKSLLSLMDE 396 >UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria RepID=B0TG57_HELMI Length = 371 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 135/323 (41%), Positives = 202/323 (62%), Gaps = 8/323 (2%) Query: 7 KVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEE------LLSQGATQRVLDATQL 60 +V D+ E G++V E E + E LS + D ++ Sbjct: 47 QVDDIYEQ--LGNMGIDVVPENTESESLDKAEEPIIREEEEIEVDLSVPEGVGIDDPVRM 104 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 YL EIG PLL+AEEE+ A+R GD A++RR+ E+NLRLVV IA+RY RG+ LDLI Sbjct: 105 YLKEIGRVPLLSAEEEIELAKRMEEGDEAAKRRLAEANLRLVVSIAKRYVGRGMLFLDLI 164 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 +EGNLGLI+AVEKFD +G++FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R Sbjct: 165 QEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIR 224 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD 240 +R+L + EP EEIA+++D PV+ V ++++ + S++TP+G + + L D + D Sbjct: 225 VSRQLLQEYGREPMPEEIAKEMDIPVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIED 284 Query: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 + P + +K+ + + L L A++ +VL RFGL + TLE+VG+E G+TRE Sbjct: 285 QDAPAPAEAASFILLKEQLEEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRE 344 Query: 301 RVRQIQVEGLRRLREILQTQGLN 323 R+RQI+ + LR+LR +++ L Sbjct: 345 RIRQIEAKALRKLRHPSRSKKLK 367 >UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacteria RepID=RPOD_STRR6 Length = 369 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 125/316 (39%), Positives = 193/316 (61%), Gaps = 1/316 (0%) Query: 8 VHDLNEDAEFDENGV-EVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIG 66 + DL + + + + + + +E L + +V D ++YL EIG Sbjct: 48 IEDLLQRIQDAGISITDNEGNPSARVLSNEEEPELSDEDLIGSTSAKVNDPVRMYLKEIG 107 Query: 67 YSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLG 126 PLLT EEE A GD+ +++R+ E+NLRLVV IA+RY RG+ LDLI+EGN+G Sbjct: 108 VVPLLTNEEEKELALAVEAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMG 167 Query: 127 LIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELS 186 L++AV+KFD +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R R L Sbjct: 168 LMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLL 227 Query: 187 HKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGP 246 +L +P+ E+IAE++D D V +L++ + S++TP+G + + L D + DE P Sbjct: 228 QELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENP 287 Query: 247 EDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQ 306 D T +++ + + L L ++ VL RFGL + TLEDVG+ +TRER+RQI+ Sbjct: 288 VDYTTRIVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIE 347 Query: 307 VEGLRRLREILQTQGL 322 + LR+LR+ +++ L Sbjct: 348 AKALRKLRQPSRSKPL 363 >UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNX0_9FIRM Length = 373 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 128/284 (45%), Positives = 187/284 (65%) Query: 40 LAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNL 99 E LS + D ++YL EIG PLLTAEEEV A+R GD +++R+ E+NL Sbjct: 86 EDVEIDLSVPEGVSIDDPVRMYLKEIGRVPLLTAEEEVALAKRMEAGDEEAQKRLAEANL 145 Query: 100 RLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM 159 RLVV IA+RY RG+ LDLI+EGNLGLI+AVEKFD +G++FSTYATWWIRQ I RAI Sbjct: 146 RLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWWIRQAITRAIA 205 Query: 160 NQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERI 219 +Q RTIR+P+H+V+ +N +R +R+L +L EP+ EEIA++++ VD V ++++ + Sbjct: 206 DQARTIRIPVHMVETINKLIRVSRQLLQQLGREPTPEEIAKEMEIGVDRVREIMKIAQEP 265 Query: 220 TSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFG 279 S++TP+G + + L D + D+ P D +K+ + L L ++ +VL RFG Sbjct: 266 VSLETPIGEEEDSHLGDFIEDQDAPAPADAASFMLLKEQLEDVLDTLTPREEKVLRLRFG 325 Query: 280 LLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 L A TLE+VG+ G+TRER+RQI+ + LR+LR +++ L Sbjct: 326 LDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLK 369 >UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacteria RepID=RPOD_LACLA Length = 386 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 194/324 (59%), Gaps = 11/324 (3%) Query: 8 VHDLNEDAEFDENGVEVFDEK------ALVEQEPSDNDLAEEELLSQGATQRVLDATQLY 61 + DL + + G+ + D+ ALV E ++++ + R+ D ++Y Sbjct: 61 LEDLFKQ--IQDAGISIVDKDGNPSPLALVTDEIEKEEVSDTAMDEIVTNVRIDDPVRMY 118 Query: 62 LGEIGYSPLLTAEEEVYFARRALRGDVAS---RRRMIESNLRLVVKIARRYGNRGLALLD 118 L EIG PL++ +EE A + G + ++ + E+NLRLVV IA+RY RG+ LD Sbjct: 119 LKEIGRYPLISLDEETKLAEAIIAGGEGAEFAKQMLAEANLRLVVSIAKRYSGRGMQFLD 178 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI+EGN+GL++AV+KFD +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N Sbjct: 179 LIQEGNMGLMKAVDKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKL 238 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 +R R L +L +PS EEI ++L D V +L++ + S++TP+G + + L D + Sbjct: 239 IRVQRNLLQELGRDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFI 298 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D+ P D T +++ + + + L ++ VL RFGL TLEDVG++ +T Sbjct: 299 EDDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVT 358 Query: 299 RERVRQIQVEGLRRLREILQTQGL 322 RER+RQI+ + +++LR +++ L Sbjct: 359 RERIRQIEAKAIKKLRHPRRSKPL 382 >UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Proteobacteria RepID=RPOS_SHIFL Length = 330 Score = 363 bits (933), Expect = 5e-99, Method: Composition-based stats. Identities = 328/330 (99%), Positives = 330/330 (100%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVE+EPSDNDLAEEELLSQGATQRVLDATQL Sbjct: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQL 60 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI Sbjct: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR Sbjct: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD 240 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD Sbjct: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD 240 Query: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE Sbjct: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 Query: 301 RVRQIQVEGLRRLREILQTQGLNIEALFRE 330 RVRQIQVEGLRRLREILQTQGLNIEALFR+ Sbjct: 301 RVRQIQVEGLRRLREILQTQGLNIEALFRK 330 >UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria RepID=C7NC70_LEPBD Length = 392 Score = 363 bits (933), Expect = 5e-99, Method: Composition-based stats. Identities = 128/318 (40%), Positives = 207/318 (65%), Gaps = 2/318 (0%) Query: 8 VHDLNEDAEFDENGVEVFDEKALVEQ--EPSDNDLAEEELLSQGATQRVLDATQLYLGEI 65 L + + + + E ++ + + + + L + +LL + V + ++YL EI Sbjct: 71 PETLADIEKMEISDFEDTHDEFVESEIDDSEVDKLLQTDLLKMAESMDVDEPIKMYLREI 130 Query: 66 GYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNL 125 G PLL+ EEE+ +A+R L G+ +++++IESNLRLVV IA+++ NRGL +LDLI+EGN+ Sbjct: 131 GQIPLLSYEEEIDYAQRVLDGEEEAKQKLIESNLRLVVSIAKKHTNRGLKMLDLIQEGNM 190 Query: 126 GLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAREL 185 GL++AVEKF+ E+GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N + +R + Sbjct: 191 GLMKAVEKFEYEKGFKFSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKIKKESRII 250 Query: 186 SHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENG 245 + EP+AEE+AE+L+ PV+ V +L +N+ S++TP+G + + L D + D+K Sbjct: 251 LQETGKEPTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDKFAN 310 Query: 246 PEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQI 305 P D T +K+ + + L LN ++ VL R+GL TLE+VG+ +TRER+RQI Sbjct: 311 PYDATTRILLKEQLDEVLKTLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQI 370 Query: 306 QVEGLRRLREILQTQGLN 323 +V+ LR+LR + + L Sbjct: 371 EVKALRKLRHPSRRKKLE 388 >UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actinobacteria (class) RepID=RPOD_MYCBO Length = 528 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 118/343 (34%), Positives = 181/343 (52%), Gaps = 33/343 (9%) Query: 13 EDAEFDENGVEVFDEKALVEQEPSDNDLAE--EELLSQGATQRVLDATQLYLGEIGYSPL 70 + A+ DE E ++ D D +E + D+ + YL +IG L Sbjct: 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 Query: 71 LTAEEEVYFARRALRG-------------------------------DVASRRRMIESNL 99 L AEEEV A+R G ++ ++E+NL Sbjct: 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 Query: 100 RLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM 159 RLVV +A+RY RG+A LDLI+EGNLGLIRAVEKFD +G++FSTYATWWIRQ I RA+ Sbjct: 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 Query: 160 NQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERI 219 +Q RTIR+P+H+V+ +N R REL L EP+ EE+A+++D + V + + Sbjct: 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 Query: 220 TSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFG 279 S+D +G + + L D + D + D ++ + L L+ ++ V+ RFG Sbjct: 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 Query: 280 LLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 L + TL+++G+ G+TRER+RQI+ + + +LR ++Q L Sbjct: 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVL 523 >UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Streptomyces RepID=UPI0001AF1456 Length = 430 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 121/306 (39%), Positives = 175/306 (57%), Gaps = 27/306 (8%) Query: 47 SQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG-------------------- 86 D + YL EIG PLLTA EEV ARR G Sbjct: 123 RPETGGPSSDLFRQYLREIGRIPLLTAAEEVELARRVEAGLFAEEKLRLTPDLDSRLAHD 182 Query: 87 -------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 ++RR+IE+NLRLVV +A+RY RGL +LDL++EGNLGLIRAVEKFD RG Sbjct: 183 LDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARG 242 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 ++FSTYATWWIRQ + RA+ +Q RTIR+P+H+V+ +N +R R + + EP+ EE+A Sbjct: 243 YKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGREPTPEEVA 302 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 LD P + V +LRL + S+ P+G + + AL D++ D P ++ +++ + Sbjct: 303 AHLDLPPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHL 362 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 L L ++R+V+ R+GL+ TLE++GR G+TRER+RQI+ + L +LR+ Sbjct: 363 EAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFA 422 Query: 320 QGLNIE 325 L Sbjct: 423 DQLRGY 428 >UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexaceae RepID=A5UPS4_ROSS1 Length = 402 Score = 356 bits (915), Expect = 6e-97, Method: Composition-based stats. Identities = 117/353 (33%), Positives = 190/353 (53%), Gaps = 28/353 (7%) Query: 1 MSQNTLKVHDLNE-DAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQ 59 + Q + D+++ A G+ V + + S D + + D + Sbjct: 48 LPQPEHHIADVDQLYASLQAEGIRVVETPLDIHDNGSTGDDELLADMPDLTDVALDDPVR 107 Query: 60 LYLGEIGYSPLLTAEEEVYFARRALRGDV---------------------------ASRR 92 +YL EIG PLL+AE+EV A+ G +R+ Sbjct: 108 MYLQEIGQVPLLSAEQEVMLAKAMEAGHRARRALEREEYSSWQERVMYEQQVAQGNEARQ 167 Query: 93 RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQ 152 +I++NLRLVV IA++Y + GL ++DL++EGN+GL+RAVEKFD +G +FSTYATWWIRQ Sbjct: 168 HLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFSTYATWWIRQ 227 Query: 153 TIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM 212 I RAI +Q+RTIRLP+H+ + ++ RT+ +L + EP+ EEIA+ + V R Sbjct: 228 AITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIADAMGISSTKVRRT 287 Query: 213 LRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQRE 272 L + S++ P+G + E + D + D++ + P + +++ + + L +L ++R+ Sbjct: 288 LEASMHPLSLEMPVGQEGEGRMGDFIEDDRISTPAEAAAASMLREQLEEVLQKLPERERK 347 Query: 273 VLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 ++ R+GL TLE+VG E G+TRER+RQI+ LR+LR + L Sbjct: 348 IIQLRYGLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLRHPHLGKKLRGY 400 >UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi (class) RepID=A7NGG2_ROSCS Length = 405 Score = 356 bits (915), Expect = 6e-97, Method: Composition-based stats. Identities = 120/298 (40%), Positives = 179/298 (60%), Gaps = 26/298 (8%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRG--------------------------D 87 V D ++YL EIG LLTA+EE+ A++ RG Sbjct: 106 VDDPVRVYLREIGRVNLLTAQEEIMLAQQVERGEQANERLQNGDYTPVERLQLHRWVQEG 165 Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 A+R R+I++NLRLVV IA++Y RG++LLDLI+EGN+GL+RA EKFD +G++FSTYAT Sbjct: 166 QAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKFDYRKGYKFSTYAT 225 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I R I +Q+RTIRLP+H+ + +N +RT+ + +P+ +EIA +L PV+ Sbjct: 226 WWIRQAITRVIADQSRTIRLPVHVGETINRVMRTSNRIQQTTGRDPTPDEIALELGIPVE 285 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V R+L + S++TP+G + + L D + D K P ++ +++ I L +L Sbjct: 286 KVRRVLEAARQTISLETPIGPEGDSVLADFIEDGKGATPMESASSHILREQIDSALEKLP 345 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 ++R ++ R+GL TLE+VGRE G+TRER+RQI+ LR+LR +GL Sbjct: 346 ERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRHPHYGRGLRGY 403 >UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATP3_RUBXD Length = 366 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 135/312 (43%), Positives = 199/312 (63%), Gaps = 4/312 (1%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGA----TQRVLDATQLYLGEIGYSPL 70 A +E + + DE+ E + A E + + D+ ++YL EIG PL Sbjct: 50 ATLEEEDITLVDEELEGAAEVTPERAAGREGDNPASQLAHAVATGDSIRMYLAEIGRVPL 109 Query: 71 LTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRA 130 LT +E+ A+ RG S+ +++E+NLRLVV IA++Y NRG++ LDLI+EGN+GLIRA Sbjct: 110 LTHADEIRLAKAISRGCKRSKDKLVEANLRLVVSIAKKYRNRGVSFLDLIQEGNIGLIRA 169 Query: 131 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLD 190 EKFD +GF+FSTYATWWIRQ I RAI ++ RTIR+P+H+V+++N Y RT R ++ L Sbjct: 170 AEKFDYRKGFKFSTYATWWIRQAITRAIADKGRTIRIPVHMVEKVNKYHRTQRRMTQALG 229 Query: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT 250 EP+ EE+AE+L PV++V R+ +++R S++TP+G D +L D L D P D Sbjct: 230 REPTDEEVAEELGVPVEEVLRLQEISQRSISLETPVGDDESSSLGDFLEDASAVTPTDAV 289 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310 + +K + + L EL ++R+++ RFG+ TLE+VGRE +TRERVRQIQ++ L Sbjct: 290 SESLLKLHLREALDELPERERQIIEMRFGMKDDRPRTLEEVGREFDITRERVRQIQMKTL 349 Query: 311 RRLREILQTQGL 322 LRE +TQ L Sbjct: 350 NLLREQRRTQNL 361 >UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacteria (class) RepID=B9CNX8_9ACTN Length = 455 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 121/327 (37%), Positives = 178/327 (54%), Gaps = 31/327 (9%) Query: 28 KALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG- 86 +P + A D ++YL EIG LLTA EEV A + G Sbjct: 124 PKAKTSKPKRSSRARARRADTSTVMLTGDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGT 183 Query: 87 ------------------------------DVASRRRMIESNLRLVVKIARRYGNRGLAL 116 + +++++I +NLRLVV IA+RY RG+ Sbjct: 184 EATQKLEDFEDEKIELSRAEQRRLMRIEQVGLDAKQQLISANLRLVVSIAKRYVGRGMLF 243 Query: 117 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELN 176 LDLI+EGNLGLIRAVEKFD +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N Sbjct: 244 LDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIN 303 Query: 177 VYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLD 236 +R R+L L +P+ EEI ++ D V + ++++ S++TP+G + + L D Sbjct: 304 KLIRVQRQLLQDLGRDPTPEEIGAEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGD 363 Query: 237 ILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIG 296 + D P D D +++ + + L L ++R+V+ RFGL TLE+VGRE G Sbjct: 364 FIEDSTAIAPPDAASDSMLREQLEQVLDGLADRERKVIKFRFGLEDGRPRTLEEVGREFG 423 Query: 297 LTRERVRQIQVEGLRRLREILQTQGLN 323 +TRER+RQI+ + L +LR ++ L Sbjct: 424 VTRERIRQIESKTLAKLRHPSRSSRLK 450 >UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=Q47RL2_THEFY Length = 388 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 125/314 (39%), Positives = 178/314 (56%), Gaps = 34/314 (10%) Query: 42 EEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRAL----------------- 84 ++ D YL EIG PLLTAEEEV A+ Sbjct: 71 DDFAEHPETRTSSGDIVHAYLREIGRVPLLTAEEEVELAKAIEIGLYAEQKLRAARTGPV 130 Query: 85 ----------------RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLI 128 R ++RR+IESNLRLVV +A+RY RGLALLDLI+EGNLGLI Sbjct: 131 PAQYSPEWFEDLNELVREGKLAKRRLIESNLRLVVSVAKRYLGRGLALLDLIQEGNLGLI 190 Query: 129 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHK 188 RAVEKFD RG++FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N RT R L + Sbjct: 191 RAVEKFDYTRGYKFSTYATWWIRQAITRAIADQARTIRVPVHMVESINRLARTRRRLHQE 250 Query: 189 LDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPED 248 L EP+ E++ +L+ D V + R+++ S+ TP+G + + A D + D P + Sbjct: 251 LGREPTLHELSRELNVDHDRVVEIHRVSQEPISLHTPIGEE-DSAFGDFIEDTDAVPPVE 309 Query: 249 TTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVE 308 ++ + + L L+ +++ V+ RFGL + TLE+VGR+ G+TRER+RQI+ + Sbjct: 310 AAAFVMLQDQLAQVLGGLSEREQRVITLRFGLEDGKPHTLEEVGRKFGVTRERIRQIESK 369 Query: 309 GLRRLREILQTQGL 322 L +LR+ + + L Sbjct: 370 TLAKLRQPSRARIL 383 >UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria RepID=C4LJ07_CORK4 Length = 621 Score = 347 bits (890), Expect = 5e-94, Method: Composition-based stats. Identities = 112/319 (35%), Positives = 168/319 (52%), Gaps = 31/319 (9%) Query: 35 PSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG-------- 86 D A + D+ + YL +IG LL AE+EV A+R G Sbjct: 298 DEDESAALRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAQRIEAGLYANHKLE 357 Query: 87 -----------------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEG 123 ++ ++E+NLRLVV +A+RY RG+A LDLI+EG Sbjct: 358 ELKASNTKLSPAQSRDLRSIAHDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEG 417 Query: 124 NLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAR 183 NLGLIRAVEKFD +G++FSTYATWWIRQ I R++ +Q RTIR+P+H+V+ +N R R Sbjct: 418 NLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRSMADQARTIRIPVHMVEVINKLGRIQR 477 Query: 184 ELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKE 243 EL L EP+ EE+A ++D D V + + S+D +G + + L D + D + Sbjct: 478 ELLQDLSREPTPEELAREMDITEDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEA 537 Query: 244 NGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVR 303 D ++ + L L ++ V+ RFGL TL+++G+ G+TRER+R Sbjct: 538 VVAVDAVSFTLLQDQLQDVLKTLTEREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIR 597 Query: 304 QIQVEGLRRLREILQTQGL 322 QI+ + + +LR ++Q L Sbjct: 598 QIESKTMSKLRHPSRSQVL 616 >UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A8S2D4_9CLOT Length = 406 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 129/328 (39%), Positives = 198/328 (60%), Gaps = 16/328 (4%) Query: 11 LNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQR----------------V 54 L++DAE D+ + + + ++ D L ++S G + Sbjct: 74 LDDDAELDQPSLAKEEFRWGRDRLDPDEMLDGGSMVSGGDEEEEEYDGYGQERLLEGVST 133 Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 D + YL EIG LLT EEE ARR GDV + R+++E+NLRLVV IA+RY RG+ Sbjct: 134 ADPIREYLKEIGSIALLTPEEESDLARRKSEGDVEAGRKLVEANLRLVVSIAKRYTGRGM 193 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 + LDL++EGNLGL++AVEKFD +G+R STYATWW++Q+I R++ +Q+RTIRLP+H+V+ Sbjct: 194 SFLDLVQEGNLGLMKAVEKFDYAKGYRLSTYATWWVKQSITRSLADQSRTIRLPVHMVEA 253 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKAL 234 +N R R LS KL EPS EE+AE+++ V+ +++ + S++TP+G + L Sbjct: 254 VNKIRRAQRSLSVKLGREPSMEEVAEEVNMSGKRVAELIQASGDTVSLETPVGDEEGSNL 313 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 D +AD+ ED + +++ I L LN ++REV+ RFGL TLE+VG+ Sbjct: 314 GDFVADDANASTEDKAESFLLREEIDSMLQGLNPREREVIILRFGLETGHPLTLEEVGKR 373 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGL 322 +TRER+RQI+ LR+LR +++ + Sbjct: 374 FNVTRERIRQIETAALRKLRNPSKSKKI 401 >UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 Tax=Actinomycetales RepID=HRDA_STRCO Length = 396 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 119/299 (39%), Positives = 173/299 (57%), Gaps = 27/299 (9%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRG--------------------------- 86 D + YL EIG PLL+A EEV ARR G Sbjct: 96 SSDLFRQYLREIGRIPLLSAAEEVDLARRVEAGLFAEEKLRCSPGLDDRLALDLDRLVVL 155 Query: 87 DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 146 ++RR+IE+NLRLVV +A+RY RGL +LDL++EGNLGLIRAVEKFD RG++FSTYA Sbjct: 156 GRLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYA 215 Query: 147 TWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPV 206 TWWIRQ + RA+ +Q RTIR+P+H+V+ +N +R R + + EP+ +E+A LD Sbjct: 216 TWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVAAHLDLAP 275 Query: 207 DDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFEL 266 + V +LRL + S+ P+G + + AL D++ D P ++ ++Q + L L Sbjct: 276 ERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHLEAVLSTL 335 Query: 267 NAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 ++R+V+ R+GL TLE++GR G+TRER+RQI+ + L +LR+ L Sbjct: 336 GERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAYADQLRGY 394 >UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1K5_THERP Length = 340 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 138/306 (45%), Positives = 194/306 (63%), Gaps = 1/306 (0%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE 74 F E E +VE E +D E+L + D +LYL +I +PLLT E Sbjct: 28 EAFAEERAIEPVEAEIVEPEALLSDAELEDLFRSDPSLAS-DPLRLYLRDIAEAPLLTPE 86 Query: 75 EEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 EEV A+R GD + +R + SNLRLVV IA+RY RGL+LLDLI+EGN+GL+RAVEKF Sbjct: 87 EEVELAKRIKEGDTEALQRFVRSNLRLVVSIAKRYVGRGLSLLDLIQEGNIGLMRAVEKF 146 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D RG+RFSTYATWWIRQ I RAI +Q RTIRLP+H+ + Y RT +L+ +L +P+ Sbjct: 147 DWRRGYRFSTYATWWIRQAITRAIADQGRTIRLPVHMTDSITRYHRTTTQLAQELGRQPT 206 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 EEIAE + + +++++R +R S+D PL + E +L D++ADE PE+ ++ Sbjct: 207 PEEIAEAMSVQPEKIAQIVRAAQRAVSLDQPLSEEDETSLGDLIADELAQSPEELAEESL 266 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 M++ I + L L ++R VL R+GL E TL +VG +G++RERVRQI+ E LR+LR Sbjct: 267 MRRDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEALRKLR 326 Query: 315 EILQTQ 320 I + + Sbjct: 327 RIARER 332 >UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZY7_9FIRM Length = 447 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 193/368 (52%), Gaps = 49/368 (13%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQ--------------- 48 ++ L ++ FDEN VE E A EE +++ Sbjct: 75 PIKSIYTLCDEIPFDENDVECMYELLKENGIGIKEFEAAEENIAKNGERADKVVDIRRIV 134 Query: 49 GATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG---------------------- 86 + + D ++YL EIG PLLT EEE A + Sbjct: 135 RTSIGIDDPVKMYLKEIGQVPLLTREEEKILATQVKHALAKQNEIRERLERLKEGSATYK 194 Query: 87 ------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 + ++ E+NLRLVV IA+ + +RG+ LDLI+EGNLGL++AV+KF Sbjct: 195 KEMKLLDEYKQDYNKAMHQLCEANLRLVVSIAKNHKDRGMHFLDLIQEGNLGLMKAVDKF 254 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D +R F+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ ++ R +R L +L EP Sbjct: 255 DVDRNFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIHKLTRISRTLLQELGREPK 314 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 EEIA+++D + V +LR+++ S++ P+G + + L D + D + P D Sbjct: 315 PEEIAKEMDITTEKVRDILRISQEPVSLEKPIGEEEDSHLGDFIPDTEVPSPLDVAFSSM 374 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++ +++ L L ++R VL RFGL+ + TLE+VG++ +TRER+RQI+ + +R+L+ Sbjct: 375 LRDELLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKLK 434 Query: 315 EILQTQGL 322 ++ L Sbjct: 435 HPNMSKKL 442 >UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria RepID=B8GCU9_CHLAD Length = 398 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 120/349 (34%), Positives = 183/349 (52%), Gaps = 32/349 (9%) Query: 7 KVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRV------LDATQL 60 + + E + + EP D + ++ D+ +L Sbjct: 44 NLEESVEQIDSIYAALAEAGVPVHDGDEPVSGDESLTPSVTDLDLDDELSDALLSDSVRL 103 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRG--------------------------DVASRRRM 94 YL EIG PLLTAE+E A+ RG +R++M Sbjct: 104 YLREIGQVPLLTAEQEKQLAQMIERGQAAERKLATLPPDSPEAAKLRRIKEQGDEARQKM 163 Query: 95 IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 154 +NLRLVV IA+RY +RGL LLDLI+EG+LGL+RA+EKFD +G++FSTYATWWI+Q + Sbjct: 164 AAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDHTKGYKFSTYATWWIKQAL 223 Query: 155 ERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR 214 RA+ +Q+R +RLP+H+ + LN R+L+ L EP+ E+A L + + + R Sbjct: 224 SRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELANHLGMSEEKLRELRR 283 Query: 215 LNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVL 274 + S+ TP+G +++ L D + D +D ++Q I L +L+ ++R VL Sbjct: 284 TAQDPVSLATPVGEEADSTLADFIPDPHALDADDAAASGMLRQQIAAALDQLSERERRVL 343 Query: 275 ARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 R+GL + TLE+VG+ G+TRERVRQI+V+ LR+LR + L Sbjct: 344 ELRYGLADGQPRTLEEVGKAFGVTRERVRQIEVKALRKLRHPRLGKLLK 392 >UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317B8 Length = 367 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 126/322 (39%), Positives = 198/322 (61%), Gaps = 9/322 (2%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 + + +++ + + A N VE ++ + + DL + D+ QL Sbjct: 51 LERAEIELVEEIDPATTASNQVERAPDRRRGRRARTALDLKPD---------MTTDSLQL 101 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 +L +IG LLTA+EEV A+R RGD+ ++++M+ESNLRLVV IA+ Y N+GL LDLI Sbjct: 102 FLKDIGKVRLLTAQEEVDLAKRIERGDLDAKQKMVESNLRLVVSIAKNYRNQGLPFLDLI 161 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 +EG LGL+RA EKFD +GF+FSTYATWWIRQ I RA+ ++ RTIR+P+H+V++LN R Sbjct: 162 QEGTLGLVRAAEKFDYRKGFKFSTYATWWIRQAIARALADKARTIRIPVHVVEKLNKIGR 221 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD 240 R+L +L EP+AEEIA+ ++V + R + S++ P+G + E +AD Sbjct: 222 AERKLVTELGREPTAEEIADVTGIDPEEVDSIKRSAQAPVSLEKPVGDEEESEFGQFIAD 281 Query: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 E+ P + + K+++ + L L+ ++R VL R+GL G TL++VGR +TRE Sbjct: 282 ERAESPYERAAEILTKEALREALENLSYRERRVLELRYGLGGEHPRTLDEVGRTFNVTRE 341 Query: 301 RVRQIQVEGLRRLREILQTQGL 322 R+RQI+ + L++L+ + + Q L Sbjct: 342 RIRQIENQSLKKLQSLAEAQKL 363 >UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi RepID=D1C1P9_SPHTD Length = 538 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 123/315 (39%), Positives = 184/315 (58%), Gaps = 4/315 (1%) Query: 11 LNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPL 70 L E+ E V + E E S E L Q ++ + + L Sbjct: 220 LTEEMEPAIQAVGEEFGVSREELEESLRRRRIEYDLLPSPIQELIRPVDAFPTDEEVWEL 279 Query: 71 LTAEEEVYFARRALR---GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGL 127 L + E R +R+++ E+NLRLVV +A++YG RG+++LDL++EGNLGL Sbjct: 280 LRRD-EAALQARWEEFVVRGDIARKKLTEANLRLVVSVAKKYGGRGMSMLDLVQEGNLGL 338 Query: 128 IRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSH 187 IRAVEKF +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+++N +RT+R L Sbjct: 339 IRAVEKFQHHKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVEQINRLIRTSRRLQQ 398 Query: 188 KLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPE 247 +L EP++EEIA ++ P D V +L++++ S++ P+G + + L D + D K P Sbjct: 399 ELGREPTSEEIAAEMGLPPDKVREILKISQEPVSLEMPIGEEEDSNLGDFIEDSKALAPS 458 Query: 248 DTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307 D +K+ + L L ++R VL RFGL TLE+VGRE G+TRER+RQI+ Sbjct: 459 DAASLKLLKEQVDDVLGSLGDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEA 518 Query: 308 EGLRRLREILQTQGL 322 + LR+LR +++ L Sbjct: 519 KALRKLRHPSRSKKL 533 Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 22 VEVFDEKALVEQEPSDNDLAEEELLSQGATQ-RVLDATQLYLGEIGYSPLLTAEEEVYFA 80 E + V +DNDL EL + + D ++YL EIG LLT E+EV A Sbjct: 91 AEDAPDLPDVAAVEADNDLFSTELSDVDLSGVSLDDPVRIYLREIGRVQLLTGEQEVALA 150 Query: 81 RRALRGD 87 + RGD Sbjct: 151 QAMERGD 157 >UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM97_9FIRM Length = 394 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 175/310 (56%), Gaps = 12/310 (3%) Query: 9 HDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS 68 D D E +E + E E + + + + + + D +LYL E G + Sbjct: 68 KDEFRDGESEEEFEDELLEDGDAEADVDEKEWEKGDGDISADPAGITDPVRLYLRECGTT 127 Query: 69 PLLTAEEEVYFARRALRGD------------VASRRRMIESNLRLVVKIARRYGNRGLAL 116 PLLT+E+E+ A+ G +++ M +NLRLVV IA++Y RG+ Sbjct: 128 PLLTSEQEMKLAQTIEIGKMPEATDEQKRMAAEAKKEMANANLRLVVSIAKKYPGRGMPF 187 Query: 117 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELN 176 LDLI+EGN+GL++AV+KFD +G++FSTYATWWIRQ I R+I +Q RTIR+P+H+V+ +N Sbjct: 188 LDLIQEGNMGLLKAVDKFDYTKGYKFSTYATWWIRQAITRSIADQARTIRVPVHMVETIN 247 Query: 177 VYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLD 236 R R + E + EE+A++++ V+ + + + S++TP+G + L D Sbjct: 248 KMNRVGRHFLQEHGREATNEELAKEMETSVEKIREAKKAAQDPISLETPIGEKEDSHLGD 307 Query: 237 ILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIG 296 + D+K PED ++ I + L L +++ V+A R+G+ TLE+VG+ G Sbjct: 308 FIEDQKTASPEDEAAATMRREQIHQLLETLTEREKGVIALRYGIDDGTQRTLEEVGKYFG 367 Query: 297 LTRERVRQIQ 306 +TRER+RQI+ Sbjct: 368 VTRERIRQIE 377 >UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmataceae RepID=D1ASA0_ANACI Length = 649 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 102/265 (38%), Positives = 170/265 (64%), Gaps = 8/265 (3%) Query: 66 GYSPLLTAEE-------EVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 LL+ E+ V ++ R +++ MI++NLRLVV IA++Y NRGL LD Sbjct: 381 NKVRLLSGEDSPGSFKALVAKIQKHERTANKAKQEMIKANLRLVVSIAKKYSNRGLQFLD 440 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 L++EGN+GL++AV+KFD +RG++FSTYATWW+RQ I RAI +Q RTIR+P+H+++ +N Sbjct: 441 LVQEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKI 500 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 RT R++ H++ EP+ EE++ +L V+ + +++++ + S+++P+G D D + Sbjct: 501 NRTLRQMLHEIGREPTLEELSARLGMNVEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCI 560 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL-GYEAATLEDVGREIGL 297 D++ PE+ D+++ K L L K+ +L RFG+ G + TLE+VG+ + Sbjct: 561 EDKRAVKPENAAVLADLREITTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNV 620 Query: 298 TRERVRQIQVEGLRRLREILQTQGL 322 TRER+RQI+ + LR+LR + + L Sbjct: 621 TRERIRQIEAKALRKLRHPSRARKL 645 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 3/104 (2%) Query: 19 ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVY 78 E E + A+ E+ + ++ E + S Q D ++YL E+ LL+ E E+ Sbjct: 90 EQSDEEEADAAVSEENAAKDEEDESGMRSLDFGQ-TDDPIRMYLCEMSSVELLSREGEIE 148 Query: 79 FARRALRGDVASRRRMIESNLRLVVKIARR--YGNRGLALLDLI 120 A+R V R +IE+ + L ++ R N+ + L DLI Sbjct: 149 IAKRIKSEKVNMLRSLIEAPMVLRTFMSWRDDLVNQQVMLRDLI 192 >UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=D1CF84_THET1 Length = 363 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 131/304 (43%), Positives = 192/304 (63%), Gaps = 3/304 (0%) Query: 20 NGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYF 79 G+EV E+ + + DL ++ L + DA ++YL EIG PLLT +EEV Sbjct: 55 EGIEVLPEETTEAEAGPEEDL-DQTLEELENDGYLTDAVKIYLREIGSVPLLTPKEEVEL 113 Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 A+R +GD + +R + +NLRLVV IA+RY RGL LLDLI+EGN+GL+RAV+KFD +G Sbjct: 114 AKRIEKGDTEALQRFVLANLRLVVSIAKRYVGRGLPLLDLIQEGNIGLMRAVQKFDWRKG 173 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 RFSTYATWWIRQ I RAI +++R IRLP HI +ELN R ++LS ++ EP+ EEIA Sbjct: 174 HRFSTYATWWIRQAITRAIGDKSREIRLPAHINEELNRINRIRQQLSQTVNREPTPEEIA 233 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 E+ + V +L ++ S+DTP+G +++ L + + D + PE+ D+ +K + Sbjct: 234 EKAGTSPERVRELLGYLQQPVSLDTPVGEEADSTLGEFVPDVRA-NPEEEATDEVLKTEM 292 Query: 260 VKWLFE-LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318 + L E L +++ VL R+GL +LE VGRE+G+TRERVRQ++ + L +LR Sbjct: 293 DRVLDEVLTPREKRVLQLRYGLGDGHTYSLEKVGRELGVTRERVRQLEKQALEKLRRGPA 352 Query: 319 TQGL 322 + L Sbjct: 353 IRKL 356 >UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria RepID=B2V7P9_SULSY Length = 590 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 177/305 (58%), Gaps = 1/305 (0%) Query: 20 NGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYF 79 + ++++ + + T ++ D + +IG P + + Sbjct: 282 LSSDYEKNPEILKKLEEHGFSYGRYEILRTETLKLKDEIEEIKQKIGTIPS-EFDHVLDL 340 Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 + ++ ++++NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+K+D ++G Sbjct: 341 IQLGRNEINNVKQVLVKANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKYDYKKG 400 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 F+FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N LR +R L +L EP+ EEIA Sbjct: 401 FKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLLRISRTLVQELGREPTPEEIA 460 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 ++ P D V ++LR ++ S++TP+G D E L D + D+ PE ++ + Sbjct: 461 KKAGMPADKVRKILRTSQDPVSLETPIGSDEESHLGDFIEDKTVLSPEQHMLKQALRLQL 520 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 + L L+ ++ +VL RFGL TLE VG+ G+TRER+RQI+ + LR+LR + Sbjct: 521 DEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLRHPHRA 580 Query: 320 QGLNI 324 + L Sbjct: 581 KYLKP 585 Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 3 QNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYL 62 + + L E +E ++V D++ + ++ ++ +L + D +LYL Sbjct: 38 SSDENIESLIE--YLNELNIDVRDDEKIKSEDEDISEHLGIDLSDDDVWNKADDPVKLYL 95 Query: 63 GEIGYSPLLTAEEEVYFARRALRGDVASRRRMIE 96 E+G PLL +EE+ ++ RG R ++ Sbjct: 96 REMGKIPLLKRDEEIKYSMEIERGRKKVFRGLLR 129 >UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacteria RepID=RPOD_STRAU Length = 317 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 122/313 (38%), Positives = 174/313 (55%), Gaps = 27/313 (8%) Query: 40 LAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG------------- 86 G D + YL EIG PLLTA EEV ARR G Sbjct: 3 PPRTRGAESGGAGPSADLFRQYLREIGRIPLLTAAEEVDLARRVEAGLFAEEKLGGAADL 62 Query: 87 --------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVE 132 ++RR+IESNLRLVV +A+RY RGL +LDL++EGNLGLIRAVE Sbjct: 63 DSQLAVDLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVE 122 Query: 133 KFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHE 192 KFD RG++FSTYATWWIRQ + RA+ +Q RTIR+P+H+V+ +N +R R + + +E Sbjct: 123 KFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYE 182 Query: 193 PSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQD 252 P+AEE+A L+ + V +LRL + S+ P+G + + AL D++ D P ++ Sbjct: 183 PTAEEVAVHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAF 242 Query: 253 DDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRR 312 + + L L ++R+V+ R+GL TLE++GR G+TRER+RQI+ + L + Sbjct: 243 FLRCEHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNK 302 Query: 313 LREILQTQGLNIE 325 LR+ L Sbjct: 303 LRDHAFADQLRGY 315 >UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KI17_9GAMM Length = 367 Score = 336 bits (862), Expect = 8e-91, Method: Composition-based stats. Identities = 184/298 (61%), Positives = 232/298 (77%) Query: 33 QEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRR 92 EP + A Q LD TQLYL EIG+ PLL+A+EE ++AR +GD A+R+ Sbjct: 70 DEPVTAQSPFNDTDDHDARQITLDPTQLYLNEIGFVPLLSADEEKHYARLVQKGDEAARK 129 Query: 93 RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQ 152 RMIESNLRLVV IARRY +RG++LLDLIEEGNLGL+RAVEKFDPERGFRFSTYATWWIRQ Sbjct: 130 RMIESNLRLVVNIARRYLHRGMSLLDLIEEGNLGLMRAVEKFDPERGFRFSTYATWWIRQ 189 Query: 153 TIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM 212 TIER IMNQ RTIRLPIH+VK+LN LR AREL+ +LDH+P+ +EIA + K +VSR+ Sbjct: 190 TIERGIMNQARTIRLPIHVVKDLNGCLRAARELTQQLDHDPTTQEIASRTHKTATEVSRL 249 Query: 213 LRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQRE 272 + LNER++S+D PLG +S+ ++ + +ADE P + QDDD+ S+ WL EL+ KQRE Sbjct: 250 MGLNERVSSMDAPLGPNSDSSVAETIADEHGCDPSEQIQDDDVHDSVAHWLDELSEKQRE 309 Query: 273 VLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 V+ RRFGLLGY++ TLE+VG+EIGLTRERVRQIQVE L+RLR IL+ QGL+ +AL ++ Sbjct: 310 VVVRRFGLLGYDSCTLEEVGQEIGLTRERVRQIQVEALKRLRRILERQGLSADALLKQ 367 >UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphaproteobacteria RepID=RPOD_RHOCA Length = 674 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 192/311 (61%), Gaps = 8/311 (2%) Query: 20 NGVEVFDEKALVEQEPSDND-----LAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE 74 N E DE E +P+ D A + ++ ++ + + ++G + Sbjct: 358 NRREFIDEYRGYELDPTWMDRMSAKPARAWVTLFEKSRDKVEDLRHEMAQVGQYVGVDIS 417 Query: 75 EEVYFARRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAV 131 E + +G+ +R+ M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV Sbjct: 418 EFRRIVNQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 477 Query: 132 EKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDH 191 +KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N +RT R++ H++ Sbjct: 478 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGR 537 Query: 192 EPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQ 251 EP+ EE+AE+L P++ V +++++ + S++TP+G + + L D + D+ P D+ Sbjct: 538 EPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAI 597 Query: 252 DDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLR 311 +++K++ + L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR Sbjct: 598 QENLKETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALR 657 Query: 312 RLREILQTQGL 322 +L+ +++ L Sbjct: 658 KLKHPSRSRKL 668 Score = 43.1 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%) Query: 49 GATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMI 95 R D ++YL E+G LL+ E E+ A+R G R MI Sbjct: 106 ETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAG----RNTMI 148 >UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicrobia RepID=B2UM02_AKKM8 Length = 688 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 108/283 (38%), Positives = 175/283 (61%), Gaps = 3/283 (1%) Query: 44 ELLSQGATQRVLDATQLYLGEIGYSPLLTAEEE---VYFARRALRGDVASRRRMIESNLR 100 + + A + + +L E+ +TA+E R+ LR ++ M+E+NLR Sbjct: 398 RMQKKVALEPDNKELKEHLAELELRMWMTADEMGDAYQELRKWLREARRAKDEMVEANLR 457 Query: 101 LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 LV+ IA++Y NRGL+ LDLI+EGN+GL++AVEKF+ RG++FSTYATWWIRQ I R+I + Sbjct: 458 LVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIAD 517 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERIT 220 Q RTIR+P+H+++ +N +R ++L + EP+ EEIAE++ PV+ V +L++ ++ Sbjct: 518 QARTIRIPVHMIETINKLMRVQKQLVQEYGREPTPEEIAEEIHLPVERVRSVLKMAQQPI 577 Query: 221 SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL 280 S+ P+G + + D + D+ P + +K+ I L L ++REV+ +RFGL Sbjct: 578 SLQAPVGDSDDTSFGDFIEDKAAENPMEEASFSFLKEKIKDVLDTLTDREREVIEQRFGL 637 Query: 281 LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 TLE+VGR+ +TRER+RQI+ + LR+LR + + Sbjct: 638 RDGSPRTLEEVGRQFSVTRERIRQIEAKALRKLRHPTRISKIK 680 Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 3 QNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYL 62 Q+ + D FD D + ++ + EE+L ++ + D ++YL Sbjct: 191 QDYEAIMDRLRSMAFDIIDASDVDSYTDRTRISTEEEDEEEKLEAKM--DILDDPVRMYL 248 Query: 63 GEIGYSPLLTAEEEVYFARRALRGDV 88 ++G LLT EEEV ++R + Sbjct: 249 KQMGQVSLLTREEEVAISKRIEDAEQ 274 >UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacteria RepID=RPOD_CAUCR Length = 652 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 99/252 (39%), Positives = 171/252 (67%), Gaps = 3/252 (1%) Query: 74 EEEVYFARRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRA 130 ++ + +G+ +R+ M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++A Sbjct: 395 DDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 454 Query: 131 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLD 190 V+KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N +RT+R++ H++ Sbjct: 455 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIG 514 Query: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT 250 EP+ EE+AE+L P++ V ++L++ + S++TP+G + + L D + D+ P D Sbjct: 515 REPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAA 574 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310 +++++ + L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + L Sbjct: 575 IQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKAL 634 Query: 311 RRLREILQTQGL 322 R+L+ +++ L Sbjct: 635 RKLKHPSRSRKL 646 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 11/103 (10%) Query: 1 MSQNTLKVHDLNED-AEFDENGVEVFDEKALV------EQEPSDNDLAEEELLSQGATQR 53 + + + + A E GV V + + E D + A R Sbjct: 51 LPSEEVSPDAIEDTLAMLSEMGVNVVEAEEDAENAEGGEVATRDENTTVIASDKPAAYDR 110 Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIE 96 D ++YL E+G LL+ E E+ A+R G R MI Sbjct: 111 TDDPVRMYLREMGSVELLSREGEIAIAKRIEAG----RDTMIR 149 >UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellular organisms RepID=RPOD_ANASP Length = 390 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 122/369 (33%), Positives = 201/369 (54%), Gaps = 47/369 (12%) Query: 1 MSQNTLKVHDLNEDAE-----FDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQR-V 54 M+Q +++ DL + + D+ ++ F E E + A+ +Q + Sbjct: 19 MNQPEIELDDLLIEEDEDLLLADDGDIDEFLEPQTDEDDAKSGKAAKSRRRTQSKKKHYT 78 Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRA------------------------------- 83 D+ +LYL EIG LL A+EE+ AR+ Sbjct: 79 EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQ 138 Query: 84 ---------LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 L ++ +M++SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EKF Sbjct: 139 LPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 198 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D E+G++FSTYATWWIRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS ++ +P+ Sbjct: 199 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPT 258 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 EEIA +++ ++ + + + + S++TP+G + + L D + + PED + Sbjct: 259 EEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG-ETPEDQVSKNL 317 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +++ + K L L+ ++R+VL R+GL TLE++G+ +TRER+RQI+ + LR+LR Sbjct: 318 LREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377 Query: 315 EILQTQGLN 323 + L Sbjct: 378 HPNRNSVLK 386 >UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JLG8_SYNJB Length = 320 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 109/282 (38%), Positives = 167/282 (59%), Gaps = 6/282 (2%) Query: 47 SQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGD---VASRRRMIESNLRLVV 103 D+ ++L E+ PLL AE+EV R G ++R ++ +NLRLVV Sbjct: 32 RATQASLSEDSVGVFLREMARYPLLNAEQEVKLGRLIAEGGAAGERAKRELVRANLRLVV 91 Query: 104 KIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTR 163 IA++Y NRG+ LDLI+EG +GLIRA EKF+ ERG++FSTYA WWIRQ I RA+ NQ R Sbjct: 92 SIAKKYLNRGVPFLDLIQEGTIGLIRAAEKFEYERGYKFSTYAYWWIRQGITRAVANQGR 151 Query: 164 TIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSR---MLRLNERIT 220 +R+P+H+V++LN R REL+ L+ P+ EIAE L+ D + +L + Sbjct: 152 LVRIPVHMVEKLNQVKRIRRELTETLNRRPTQAEIAEALEISPDKLDALLTLLEAGRQTL 211 Query: 221 SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL 280 S+ TP+G + ++ L+ ++ D PE + + + L +L+ +++E+L R+GL Sbjct: 212 SLHTPVGKEEDRELMQLIEDANSLTPESQMDLHLLSAQLEEMLEQLSPREQEILKLRYGL 271 Query: 281 LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 TL ++G+ GL+RERVRQIQ +R+LR + + L Sbjct: 272 KDGHLHTLSEIGQLFGLSRERVRQIQARAMRKLRHPRRQEIL 313 >UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZE6_ERYRH Length = 459 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 174/305 (57%), Gaps = 4/305 (1%) Query: 19 ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVY 78 E E K +P+ D E L++ D + YL E G L + Sbjct: 151 EQAKEFIINKYKEIVDPAITDEELAERLTENQIGYFFDDFEAYLTENGDEENLAF---LT 207 Query: 79 FARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPER 138 + +RR +I +NLRLVV IA++Y RG+ LDLI+EGN+GL++AVEKFD + Sbjct: 208 NWVATYYDGLEARRILISANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLVKAVEKFDYTK 267 Query: 139 GFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEI 198 GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N R R L L EP+AEEI Sbjct: 268 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLTRIQRSLVQTLGREPTAEEI 327 Query: 199 AEQL-DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257 A ++ + + V + ++ S++TP+G + + L D + D+ P++ + +K+ Sbjct: 328 AAEMENITPEKVREIQKIALDPVSLETPIGEEDDSHLGDFIEDKDALSPDEYANNQLLKE 387 Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 I L L ++ +VL RFGL TLE+VG+E +TRER+RQI+ + LR+L+ Sbjct: 388 EIKMVLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPT 447 Query: 318 QTQGL 322 +++ L Sbjct: 448 RSKRL 452 Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 5/93 (5%) Query: 10 DLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSP 69 D+++D DE + + +L + + S + E L+ R+ D ++YL EIG Sbjct: 78 DVDDDFISDEAEEDEIFDDSLNKVDLS----SYENELTSANMVRINDPVKMYLKEIGRVN 133 Query: 70 LLTAEEEVYFARRALRGDVASRRRMIESNLRLV 102 LL A++E ARR G ++ +I +V Sbjct: 134 LLDAKDEPEIARRLQEG-EQAKEFIINKYKEIV 165 >UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria RepID=Q1J156_DEIGD Length = 532 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 126/319 (39%), Positives = 179/319 (56%), Gaps = 31/319 (9%) Query: 35 PSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA----- 89 + ND EE D + YL EIG PLLT EEE+ ARR G+ A Sbjct: 209 AAANDDEEERYFDDMPRAVSNDPVRQYLHEIGRVPLLTLEEEIALARRIEEGEEARKMLE 268 Query: 90 -----------------------SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLG 126 +R+ +IE+NLRLVV IA++Y RGL LDLI+EGN G Sbjct: 269 EAGDELDDRARRRLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQG 328 Query: 127 LIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELS 186 LIRAVEKF+ R ++FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N RTAR+L Sbjct: 329 LIRAVEKFEYRRRYKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQ 388 Query: 187 HKLDHEPSAEEIAEQL--DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKEN 244 +L EP+ EEIAE + V + ++++ S++TP+G + + D + DE + Sbjct: 389 QELSREPTYEEIAEAMGPGWDAAKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLD 448 Query: 245 GPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQ 304 P D + + + K L +L ++ VL R GL+ TLE+VG+ +TRER+RQ Sbjct: 449 SPVDNAAKTLLSEELEKALSKLTEREALVLKFRKGLVDGREHTLEEVGQRFNVTRERIRQ 508 Query: 305 IQVEGLRRLR-EILQTQGL 322 I+ + LR+L+ +T+ L Sbjct: 509 IENKALRKLKYHESRTRKL 527 >UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila RepID=Q6AQ51_DESPS Length = 534 Score = 333 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 179/310 (57%), Gaps = 9/310 (2%) Query: 18 DENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEV 77 + K VE + DL EEE+ S +R++D ++ E G + + Sbjct: 227 AAEDLSKRFRKIFVELIAGEGDLPEEEMRSPEELERLVDL--QFIRESGS----SLQSLN 280 Query: 78 YFARRALRG---DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 + G ++ ++ +NLRLV+ +++R+ NRGL DLI+EGN+GL++AVEKF Sbjct: 281 ELLKEVEEGRFISKEAKEALVRANLRLVISVSKRFVNRGLQFSDLIQEGNIGLMKAVEKF 340 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D RGF+FSTYATWWIRQ+I R I +Q RTIRLP+H+++ +N LR +++ + EPS Sbjct: 341 DYRRGFKFSTYATWWIRQSITRGIADQGRTIRLPVHMIETINRMLRVSKDFYLEEHREPS 400 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 EE+A QL VD V L++ + S+DTP+G D E L D + D+ GP+ Sbjct: 401 VEEVAGQLGTEVDKVKSALKIAKDAISLDTPVGDDGETYLGDFIVDKNCLGPDGFAMVAS 460 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 +K+ + + L L+ ++ +VL R+G+L TLE+VGR +TRER+RQI+ + + +L+ Sbjct: 461 LKECLSQVLSSLSPREEKVLKMRYGILEKREYTLEEVGRCFNVTRERIRQIEAQAISKLK 520 Query: 315 EILQTQGLNI 324 + L + Sbjct: 521 HPSRCGDLKV 530 >UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellular organisms RepID=RPOD_XYLFT Length = 618 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 101/262 (38%), Positives = 171/262 (65%), Gaps = 3/262 (1%) Query: 64 EIGYSPLLTAEEEVYFARRALRGDVAS---RRRMIESNLRLVVKIARRYGNRGLALLDLI 120 ++ LT + R + G+ + ++ M+E+NLRLV+ IA++Y NRGL LDLI Sbjct: 350 DLEKVNSLTLADIKEINRMMVYGEAKASKAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 409 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 +EGN+GL++AV KF+ RGF+FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R Sbjct: 410 QEGNIGLMKAVCKFEHRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR 469 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD 240 +R++ + E + EE+A+++D P D + +++++ + S++TP+G D + L D + D Sbjct: 470 ISRQMLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIED 529 Query: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 P DTT + ++ +++ + L L ++ +VL RFG+ TLE+VG++ +TRE Sbjct: 530 PNVESPVDTTTNVNLSETVREVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRE 589 Query: 301 RVRQIQVEGLRRLREILQTQGL 322 R+RQI+ + LR+LR +++ L Sbjct: 590 RIRQIEAKALRKLRHPSRSEQL 611 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%) Query: 30 LVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA 89 + + + A R D ++Y+ E+G LLT E E+ A+R G Sbjct: 78 REVDDTAAEEAAAALSALDTEAGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLSE 137 Query: 90 SRRRM 94 + + Sbjct: 138 VQAAL 142 >UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=Q3AWQ6_SYNS9 Length = 451 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 173/310 (55%), Gaps = 41/310 (13%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRG--------------------------- 86 D+ ++YL EIG LL +EE+ AR+ Sbjct: 139 TEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALV 198 Query: 87 -------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 ++ +M++SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EK Sbjct: 199 EMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 258 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 FD E+G++FSTYATWWIRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS + +P Sbjct: 259 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKP 318 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253 + EEIAE ++ ++ + + + + S++TP+G + + L D + + PE + Sbjct: 319 TEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD-IENPEQDVAKN 377 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 +++ + L L+ ++R+VL R+GL TLE++G+ +TRER+RQI+ + LR+L Sbjct: 378 LLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKL 437 Query: 314 REILQTQGLN 323 R + L Sbjct: 438 RHPNRNGVLK 447 >UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Proteobacteria RepID=RPOD_AGRT5 Length = 684 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 100/278 (35%), Positives = 175/278 (62%), Gaps = 3/278 (1%) Query: 48 QGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASR---RRMIESNLRLVVK 104 + + + + ++ E +G+ +R + M+E+NLRLV+ Sbjct: 401 AREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVIS 460 Query: 105 IARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRT 164 IA++Y NRGL LDLI+EGN+GL++AV+KF+ RG++FSTYATWWIRQ I R+I +Q RT Sbjct: 461 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 520 Query: 165 IRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDT 224 IR+P+H+++ +N +RT+R++ H++ EP+ EE+AE+L P++ V ++L++ + S++T Sbjct: 521 IRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLET 580 Query: 225 PLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYE 284 P+G + + L D + D+ P D +++++ + L L ++ VL RFG+ Sbjct: 581 PVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNT 640 Query: 285 AATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 TLE+VG++ +TRER+RQI+ + LR+L+ +++ L Sbjct: 641 DHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKL 678 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 26 DEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALR 85 +E++ + A + T R D ++YL E+G LL+ E E+ A+R Sbjct: 97 NEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEA 156 Query: 86 GDVASRRRMI 95 G R MI Sbjct: 157 G----RETMI 162 >UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=A0L5T1_MAGSM Length = 683 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 108/325 (33%), Positives = 191/325 (58%), Gaps = 12/325 (3%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 ++Q +K + E +E+ A P + EL+ + QL Sbjct: 362 VTQCNVKKPEFIEQFTGNESDTTWIQNFAKTRSAPWKRLYEQSELICEA---------QL 412 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVAS---RRRMIESNLRLVVKIARRYGNRGLALL 117 + I T + ++ + G+ + ++ M+E+NLRLV+ IA++Y NRGL L Sbjct: 413 VIRSIEEEAGQTVADLKKCNKKLMDGERRANQAKKEMVEANLRLVISIAKKYTNRGLQFL 472 Query: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177 DLI+EGN+GL++AV+KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N Sbjct: 473 DLIQEGNIGLMKAVDKFEWRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 532 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 +RT+R++ ++ EP+ EEIAE++ ++ V ++L++ + S++TP+G + + L D Sbjct: 533 LVRTSRQMVQEMGREPTPEEIAERMSMSLEKVRKVLKIAKEPISLETPVGDEEDSHLGDF 592 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 + D+ P + +++ + + L L +++ VL RFG+ TLE+VG++ + Sbjct: 593 IEDKSMLSPSEHAIMSNLRDTTGRVLQTLTSREEHVLRMRFGIGLPTDHTLEEVGKQFNV 652 Query: 298 TRERVRQIQVEGLRRLREILQTQGL 322 TRER+RQI+ + LR+LR +++ L Sbjct: 653 TRERIRQIEAKALRKLRHPTRSRKL 677 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Query: 7 KVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIG 66 + L++D DE + + D + ++ ++ L + + + D ++YL E+G Sbjct: 83 NLDSLDDD--VDEEILGISDFDSEDDESDDEDGLRSDGAIEDIDLGKTDDPVRMYLREMG 140 Query: 67 YSPLLTAEEEVYFARRALRGDVA 89 LLT E E+ A+R G Sbjct: 141 SVELLTREGEIAIAKRIEEGCNE 163 >UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/Verrucomicrobia group RepID=B3DXQ3_METI4 Length = 287 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 119/270 (44%), Positives = 183/270 (67%), Gaps = 1/270 (0%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGN 111 A +LYL EI PLLT E+EV A+R +GD +RR+MI++NLRLVVKIA Y N Sbjct: 2 DNNDSALKLYLREISQIPLLTKEKEVELAKRIQQGDQEARRQMIQANLRLVVKIAHDYAN 61 Query: 112 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 171 GL L DLI EGN+GL++AV++FDP +G + STYA WWI+Q+I+RA+ NQ++TIRLP+H+ Sbjct: 62 SGLPLPDLISEGNIGLMKAVDRFDPSKGGKLSTYAAWWIKQSIKRALANQSKTIRLPVHL 121 Query: 172 VKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSE 231 V ++ R A +LS L +P+ EE+AE+L V+ + + R S+D +G + + Sbjct: 122 VDKIAKMRRVAMQLSEILGRDPTDEELAEELGMSTTKVAELRTIAIRPASLDATVGEEED 181 Query: 232 KA-LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLED 290 L +++ DE P+ + D ++K +I++ L +L+ ++R++L+ RFGL G E TLE+ Sbjct: 182 GTALGELVKDESAASPDQSVLDQNLKNTIMELLPKLDERERKILSLRFGLEGNEQMTLEE 241 Query: 291 VGREIGLTRERVRQIQVEGLRRLREILQTQ 320 +G+E +TRER+RQ+Q LR++R+ L+ Q Sbjct: 242 IGKEFHVTRERIRQLQNIALRKIRKELEKQ 271 >UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteobacteria RepID=A9W0B8_METEP Length = 718 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 100/246 (40%), Positives = 169/246 (68%) Query: 77 VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 V ++ R +++ MIE+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ Sbjct: 467 VAMVQKGEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 526 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N +RT+R++ H++ EP+ E Sbjct: 527 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPE 586 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 E+AE+L P++ V ++L++ + S++TP+G + + L D + D+ P D +++ Sbjct: 587 ELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNVVLPIDAAIQSNLR 646 Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 ++ + L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ Sbjct: 647 ETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHP 706 Query: 317 LQTQGL 322 +++ L Sbjct: 707 SRSRKL 712 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMI 95 ++ T R D ++YL E+G LL+ E E+ A+R G R MI Sbjct: 175 TTREPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAG----REAMI 220 >UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteobacteria RepID=A8ZUC3_DESOH Length = 738 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 104/246 (42%), Positives = 165/246 (67%), Gaps = 3/246 (1%) Query: 81 RRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137 ++ G + ++ +I +NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+KF+ Sbjct: 488 KKIDDGYLRAKASKSELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYR 547 Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197 RG++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N +RT+R L + +EPS EE Sbjct: 548 RGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQERGYEPSPEE 607 Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257 IAE+++ P++ V R+L++ S++TP+G + + L D + D+K P + ++ + Sbjct: 608 IAEKMEIPLEKVRRVLKIAREPISLETPIGEEEDSHLGDFIEDKKFMIPSEAAVSMNLSE 667 Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 K L L ++ +VL RFG+ TLE+VGR+ +TRER+RQI+ + LR+LR Sbjct: 668 QTRKVLATLTPREEKVLRMRFGIGEKADHTLEEVGRDFAVTRERIRQIEAKALRKLRHPT 727 Query: 318 QTQGLN 323 +++ L Sbjct: 728 RSKMLK 733 Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Query: 32 EQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASR 91 E + + V D ++YL E+G LL+ E EV A++ G+ + Sbjct: 225 EDGAKSTTRGDSPVTYDSDPGSVTDTVKMYLREMGLVTLLSREGEVEIAKKIEAGEQEAL 284 Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNL 125 R M+++ + V I +A D I+ GNL Sbjct: 285 RGMLDTAVG-VESI--------IAYGDNIDVGNL 309 >UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JCN6_9BACT Length = 377 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 115/295 (38%), Positives = 183/295 (62%), Gaps = 1/295 (0%) Query: 27 EKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG 86 + V + N A + A ++ + YL EIG LLT +EV ARR G Sbjct: 50 NEDEVSNVTTINFRAPAPQKKEKAELPDRNSIRTYLQEIGRIDLLTPAQEVTLARRIQAG 109 Query: 87 DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 146 + +R MI+SNLRLVVKIA Y + GL +LDLI EGN+GL++AVE+FDP++G + STYA Sbjct: 110 EKEARDLMIKSNLRLVVKIAHDYKDFGLPVLDLISEGNIGLVKAVERFDPDKGGKLSTYA 169 Query: 147 TWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPV 206 WWI+Q+I+RA+ NQ++TIRLP+H+V +++ + A L+ +L EP+ +E+AE L+ PV Sbjct: 170 AWWIKQSIKRALANQSKTIRLPVHLVDKISRMRKMALMLTEELGREPTDQELAEMLEMPV 229 Query: 207 DDVSRMLRLNERITSVDTPLGGDSEKA-LLDILADEKENGPEDTTQDDDMKQSIVKWLFE 265 + VS + ++ R TS++ P+G D +I+ D+ P + + ++ + + + Sbjct: 230 NKVSHLKSVSVRPTSLNAPVGEDGNSTEFGEIVGDDNAPTPYENLHEKSLRGDLHEMIDG 289 Query: 266 LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 L ++ E++ RFGL G TLE+VG+ +TRERVRQ+Q L ++R+I+ ++ Sbjct: 290 LEDREAEIIRLRFGLNGDSPLTLEEVGQVFDITRERVRQLQNIALSKMRKIMASK 344 >UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci RepID=C1CW22_DEIDV Length = 547 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 122/314 (38%), Positives = 176/314 (56%), Gaps = 30/314 (9%) Query: 39 DLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA--------- 89 D EE+ D + YL EIG LLT EEE+ ARR G+ A Sbjct: 229 DDDEEKYFDDMPRAVSNDPVRQYLHEIGRVSLLTLEEEIALARRIEEGEEARKLLEEDVE 288 Query: 90 ------------------SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAV 131 +R+ +IE+NLRLVV IA++Y RGL LDLI+EGN GLIRAV Sbjct: 289 LDDRGRRRLMRQMEDGANARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIRAV 348 Query: 132 EKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDH 191 EKF+ R ++FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N RTAR+L +L Sbjct: 349 EKFEYRRRYKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSR 408 Query: 192 EPSAEEIAEQL--DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDT 249 E + EEIAE + V + ++++ S++TP+G + + D + DE + P + Sbjct: 409 EATHEEIAEAMGPGWDAAKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPVEN 468 Query: 250 TQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEG 309 + + + K L +L ++ VL R GL+ TLE+VG+ +TRER+RQI+ + Sbjct: 469 AAKTLLSEELEKALSKLTEREAMVLKFRKGLVDGREHTLEEVGQRFSVTRERIRQIENKA 528 Query: 310 LRRLR-EILQTQGL 322 LR+L+ +T+ L Sbjct: 529 LRKLKYHESRTRKL 542 >UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A975_9BACT Length = 631 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 103/279 (36%), Positives = 179/279 (64%), Gaps = 3/279 (1%) Query: 47 SQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARR---ALRGDVASRRRMIESNLRLVV 103 ++ A L EI + + + R+ +R ++ M+E+NLRLV+ Sbjct: 286 TKKDAAIDTKAIHARLREIEVEQRIEPAQLIEVVRKTNVHIREAHQAKTEMVEANLRLVI 345 Query: 104 KIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTR 163 IA++Y NRGL+ LDLI+EGN+GL++AVEKF+ RG++FSTYATWWIRQ I R+I +Q R Sbjct: 346 SIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQAR 405 Query: 164 TIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVD 223 TIR+P+H+++ LN ++ ++L + HEP+ EE+A++++ PV+ V +++++ ++ S+ Sbjct: 406 TIRIPVHMIETLNKVMQVQKQLLQEFGHEPTPEEVADEMNLPVERVQQIMKMAQQPISLQ 465 Query: 224 TPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGY 283 +P+G + + D + D+ P D T +++ I+ L L ++R+VL+ RFGL+ Sbjct: 466 SPVGDGDDTSFGDFIEDKSAENPYDMTAYSLLREKIIDVLDSLTERERKVLSLRFGLVDG 525 Query: 284 EAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 + TLE+VG++ +TRER+RQI+ + LR++R + + L Sbjct: 526 YSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRIRQL 564 Score = 57.0 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 41/97 (42%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 + ++ +++ +N E VE + EEE + D ++ Sbjct: 63 LPESVENQEEIDNVLSILQNLEIEILEPDQVEDYKQRQEEQEEEESRTSNNDILDDPVRM 122 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIES 97 YL ++G PLLT E+EV ++R + ++ + E+ Sbjct: 123 YLKQMGQVPLLTREQEVEISKRIETAESKAQEALFEA 159 >UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Proteobacteria RepID=RPOD_COXBU Length = 698 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 100/264 (37%), Positives = 163/264 (61%), Gaps = 3/264 (1%) Query: 62 LGEIGYSPLLTAEEEVYFARRA---LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 L ++ L +E RR +++ MIE+NLRLV+ IA++Y NRGL LD Sbjct: 427 LAQLEEQNNLNIQEIKEINRRVAIGEAKSRRAKKEMIEANLRLVISIAKKYTNRGLQFLD 486 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI+EGN+GL++AV+KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N Sbjct: 487 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 546 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 R +R++ + E + EE+ ++D P + V ++L++ + S++TP+G D + L D + Sbjct: 547 NRISRQILQETGIEATPEELGRRMDMPEEKVRKVLKIAKEPISMETPIGEDEDSNLGDFI 606 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D P D + ++ + L L ++ +VL RFG+ TLE+VG++ +T Sbjct: 607 EDINMESPVDFATSAGLMEATREILSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVT 666 Query: 299 RERVRQIQVEGLRRLREILQTQGL 322 RER+RQI+ + LR+LR + + L Sbjct: 667 RERIRQIEAKALRKLRHPSRAEKL 690 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 7/81 (8%) Query: 16 EFDENGVEVFDEKAL------VEQEPSDNDLAEEELLSQ-GATQRVLDATQLYLGEIGYS 68 E G++VF+ E SD+D E++ R D ++Y+ E+G Sbjct: 138 RLTEMGIKVFEIPPDADSLLLEEDTQSDDDEINEDVAEVLATETRTTDPVRMYMREMGSV 197 Query: 69 PLLTAEEEVYFARRALRGDVA 89 LLT E E+ A+R G Sbjct: 198 ELLTREGEIVIAKRIEEGIRQ 218 >UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteria RepID=C1F1D9_ACIC5 Length = 597 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 114/326 (34%), Positives = 190/326 (58%), Gaps = 9/326 (2%) Query: 2 SQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLY 61 +Q ++ D +E + + S ++ ++E Q + Sbjct: 270 NQERKRLLDKVNKTVDSMRTLERQIRSLDQKYDQSKSEELKKEYRRQQKNCKTD------ 323 Query: 62 LGEIGYSPLLTAEEEVYFARRALRGD---VASRRRMIESNLRLVVKIARRYGNRGLALLD 118 L ++ L+ + R ++GD ++R +IE+NLRLVV IA++Y NRGL LD Sbjct: 324 LEKLEEEAGLSIADLKRTQREIIQGDMDAEQAKRELIEANLRLVVSIAKKYTNRGLQFLD 383 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI+EGN+GL++AV+KF+ RG++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N Sbjct: 384 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKL 443 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 +RT+R+L +L EP++EEIA ++D PV V ++L++ + S++TP+G + + L D + Sbjct: 444 IRTSRQLVQELGREPTSEEIARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFI 503 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D + P + ++K+ + L L ++ V+ RFGL TLE+VG+ +T Sbjct: 504 EDSQAVSPSEAVISVNLKEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVT 563 Query: 299 RERVRQIQVEGLRRLREILQTQGLNI 324 RER+RQI+ + LR+LR +++ L Sbjct: 564 RERIRQIEAKALRKLRHPSRSRKLRA 589 Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 35/83 (42%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLG 63 + + DL + K + ++ E L+ G ++ D ++YL Sbjct: 77 SPEDLDDLMTTIGTQGIDILEGSPKLGNDGFDDEDSDDVELDLTPGTLEKTNDPVRMYLR 136 Query: 64 EIGYSPLLTAEEEVYFARRALRG 86 E+G PLLT E EV A+R RG Sbjct: 137 EMGTVPLLTREGEVEIAKRIERG 159 >UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRI0_HIRBI Length = 683 Score = 330 bits (846), Expect = 6e-89, Method: Composition-based stats. Identities = 100/252 (39%), Positives = 169/252 (67%), Gaps = 3/252 (1%) Query: 74 EEEVYFARRALRGDVASR---RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRA 130 E+ +G+ +R + M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++A Sbjct: 426 EDFRRIVATVQKGEREARVAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 485 Query: 131 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLD 190 V+KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N +RT R++ H++ Sbjct: 486 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTQRQMLHEIG 545 Query: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT 250 EP+ EE+AE+L P++ + ++L++ + S++TP+G D + L D + D+ P D Sbjct: 546 REPTPEELAEKLGLPLEKIRKVLKIAKEPISLETPIGDDEDSNLGDFIEDKMALLPVDAA 605 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310 +++++ + L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + L Sbjct: 606 IQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKAL 665 Query: 311 RRLREILQTQGL 322 R+L+ +++ L Sbjct: 666 RKLKHPSRSRKL 677 Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%) Query: 47 SQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIE 96 R D ++YL E+G LL+ E E+ A+R G R MI Sbjct: 111 RSDRYDRTDDPVRMYLREMGTVELLSREGEIAIAKRIEAG----RDAMIR 156 >UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0M9H5_9FIRM Length = 347 Score = 329 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 117/328 (35%), Positives = 194/328 (59%), Gaps = 4/328 (1%) Query: 2 SQNTLKVHDLNE--DAEFDENGVE-VFDEKALVEQEPSDNDLAEEELLSQGATQRVLDAT 58 + N +++ ++++ D E + V E SD A ++ + D+ Sbjct: 17 NHNVIQLDEVDQVFDKSLSEQEFDYVIGRLKDQNIEFSDFTAAGHADTAEAENAVMEDSV 76 Query: 59 QLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG-NRGLALL 117 + YL IG PLL+ ++E A+ G +++ +MI SNLRLVV +A+RY G+ALL Sbjct: 77 KAYLHRIGRIPLLSKDQEERLAKEIEAGSQSAKDKMINSNLRLVVSVAKRYAAGSGMALL 136 Query: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177 DLI+EGN+GL++AV+KFD RG++FSTYA WWIRQ++ RAI +Q RTIR+P+H+ +++ Sbjct: 137 DLIQEGNIGLMKAVDKFDYRRGYKFSTYAMWWIRQSVTRAIADQARTIRIPVHMKEKMGK 196 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 AR+ + EP+A+E+AE ++ D + ++RL S+D+P+G + + L++ Sbjct: 197 VSGAARKFLEENGREPNADELAELMEISRDQMDEIMRLYSDTVSLDSPVGEEEDAMLMNF 256 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 +ADE T + + + I + L EL +++ +L RFG + TLE+VGRE + Sbjct: 257 VADESMPEQYQTAEQGILSEQINEILSELTEREQTILRLRFGFVENRIWTLEEVGREYHV 316 Query: 298 TRERVRQIQVEGLRRLREILQTQGLNIE 325 TRER+RQI+ + LR+L+ +T+ L Sbjct: 317 TRERIRQIEGKALRKLKMKKETKSLRAY 344 >UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium difficile RepID=C9XJA1_CLODC Length = 301 Score = 329 bits (845), Expect = 8e-89, Method: Composition-based stats. Identities = 103/275 (37%), Positives = 172/275 (62%), Gaps = 2/275 (0%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG 110 + V +A ++YL EI +L+A EEV A+ + ++ + I SN RLVV IA+RY Sbjct: 24 SSNVSNAMKMYLKEIEEYKMLSAGEEVELAKEIINSSSVAKEKFINSNYRLVVSIAKRYK 83 Query: 111 NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH 170 + +LDLI+ GN+GLI+AVEK+D ++G++FSTYATWWI+Q+I R I + TIR+PIH Sbjct: 84 RDSIDMLDLIQAGNIGLIKAVEKYDYKKGYKFSTYATWWIKQSITRYIDDCENTIRIPIH 143 Query: 171 IVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDS 230 + + +N + +EL + L EP+ +EIA+ VD V +LR ++ + S+DTPL D Sbjct: 144 LHQRINFVKKKKQELLNVLLREPTIDEIADACGLEVDKVLELLRRDKNVVSLDTPLKEDE 203 Query: 231 EKALLDILADEKE--NGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATL 288 + +L++ + + + + + ++K+ I + L L ++++VL RFG+ + TL Sbjct: 204 DSSLVEFIPSDADFKDVVIHEVEQHNLKEKIEELLTGLGEQEQQVLRMRFGIDDDDPKTL 263 Query: 289 EDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 E +G+ G+TRER+RQI+ + +R+LR + + L Sbjct: 264 EQIGKVFGVTRERIRQIEAKAIRKLRHPSKLKQLK 298 >UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHQ6_9BACT Length = 322 Score = 329 bits (845), Expect = 8e-89, Method: Composition-based stats. Identities = 124/321 (38%), Positives = 199/321 (61%), Gaps = 12/321 (3%) Query: 20 NGVEVFDEKALVEQEPSDNDLAEEELLSQGA-----------TQRVLDATQLYLGEIGYS 68 + E+ D++ L+E+EP+D EE + L+ ++YL EI Sbjct: 2 SESEIVDKEELLEEEPTDLSEVEEIETKLDTCETEPEPKYEYSSEDLEVFKIYLNEISKY 61 Query: 69 PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLI 128 P+LT E+E ++ +G S+ MI+ NLRLVV IA++Y NRG+ L+DL+EEGN+GL+ Sbjct: 62 PVLTREQEGELSQGIEKGCNDSKETMIKCNLRLVVSIAKKYINRGMNLVDLVEEGNIGLL 121 Query: 129 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHK 188 +AVEKFD +GF+FSTYATWWIRQ IERAI+NQ R +R+P+H+ + ++ ++T EL K Sbjct: 122 KAVEKFDYTKGFKFSTYATWWIRQAIERAIINQCRMVRIPVHMSENISKVMKTQNELQQK 181 Query: 189 LDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEK-ENGPE 247 L EP+ E++ P+ + ++ ++ TS+D P+GGD L + +AD++ P Sbjct: 182 LGREPTIHELSTACKMPLSTLKKVFDAIKQDTSLDMPVGGDESSTLHEFIADDEKYLDPY 241 Query: 248 DTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307 ++ K+ I KWL L+ ++ ++ RR+GL G + TLE +G ++G+TRERVRQI+ Sbjct: 242 LKIENTSKKEIIFKWLTFLSDNEKTIIIRRYGLTGNDPETLESIGNDLGITRERVRQIEK 301 Query: 308 EGLRRLREILQTQGLNIEALF 328 L ++R +L T+ +++E L Sbjct: 302 RVLSKMRNLLATKKISLEELL 322 >UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=Q0EWY1_9PROT Length = 660 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 186/316 (58%), Gaps = 10/316 (3%) Query: 11 LNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPL 70 E DE DE ++ + EE QR L + Sbjct: 336 FLETFPVDETNERWIDELMKQNKDAAWVTAIEEVTGKIKENQRR-------LRRVEQETE 388 Query: 71 LTAEEEVYFARRA---LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGL 127 + E AR+ ++R MIE+NLRLV+ IA++Y NRGL LDLI+EGN+GL Sbjct: 389 MGVVELKDVARKLTMGEAKMRQAKREMIEANLRLVISIAKKYTNRGLGFLDLIQEGNIGL 448 Query: 128 IRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSH 187 ++AVEKF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N +R +R+++ Sbjct: 449 MKAVEKFEWRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMMRVSRQIAQ 508 Query: 188 KLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPE 247 ++ EP+ EE+AE L+ PV+ V ++L + + S++TP+G D + L D + D+ P Sbjct: 509 EIGREPTPEELAEHLELPVEKVLQILEVAKEPVSLETPIGDDEDSQLGDFVEDDNAENPL 568 Query: 248 DTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307 D+T + ++ ++ L L ++++VL RFG+ TLE+VG++ G+TRER+RQI+ Sbjct: 569 DSTIGAALAEATLEVLENLTDREQKVLRMRFGIGMNTDHTLEEVGKQFGVTRERIRQIEA 628 Query: 308 EGLRRLREILQTQGLN 323 + LR+LR ++Q L Sbjct: 629 KALRKLRHPSRSQKLK 644 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 8/86 (9%) Query: 17 FDENGVEVFDEKA--------LVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS 68 F E GVEV D + ++ ++ + G R+ D ++YL E+G Sbjct: 53 FTEMGVEVVDPERAPTGAYAMRKDRLRKEDSALRADTSQLGTVIRIDDPVRMYLREMGTV 112 Query: 69 PLLTAEEEVYFARRALRGDVASRRRM 94 LLT E E+ ARR G + + Sbjct: 113 ELLTREGEIEIARRIEEGRMQVHEAI 138 >UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomycetales RepID=Q2J784_FRASC Length = 422 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 127/353 (35%), Positives = 189/353 (53%), Gaps = 35/353 (9%) Query: 5 TLKVHDLNEDAEFDENGVEVFDEKA--------LVEQEPSDNDLAEEELLSQGATQRVLD 56 + +L + E + G+E+ + E +D A S D Sbjct: 65 EISRSELRDVLESADIGIELLPALIARLNAVGIELLDEEEASDDATAASRSTAEHAGTAD 124 Query: 57 ATQLYLGEIGYSPLLTAEEEVYFARRALRG---------------------------DVA 89 ++YL EIG PLL A +EV ++R G A Sbjct: 125 LVRMYLREIGKVPLLNAAQEVELSKRVEAGLFAEYKLESVPDLPADLRRDLGLLVKDGHA 184 Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++++++ +NLRLVV +A++Y RG+ LLDL++EGNLGLIRAVEKFD +G++FSTYATWW Sbjct: 185 AKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATWW 244 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RA+ +Q RTIR+P+H+V+++N R R+L L EP+ EE+A +LD P++ V Sbjct: 245 IRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEELALELDMPIEQV 304 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + R + S++T +G D + L D + D P D M+ I L L+ + Sbjct: 305 VELRRYAQDTVSLETSVGDDGDSVLGDFIEDSDATSPADAASYGAMQDEIENVLGGLSPR 364 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 +REV+ RFGL + TL +VG +GLTRER+RQI+ + LR LR+ L Sbjct: 365 EREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAGRL 417 >UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogaceae RepID=A9BJC9_PETMO Length = 424 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 105/300 (35%), Positives = 171/300 (57%), Gaps = 5/300 (1%) Query: 28 KALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGD 87 E+ + + + + D ++YL EI S LLT E ARRA GD Sbjct: 120 FKDSEEYEEIFEDFSDVEVEMCDNISLQDPIKIYLKEISKSKLLTPSRERKLARRAQMGD 179 Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 +R +I++NLRLV+ IA+RY GL LDLI+EGN+GL++AV KFD ++G++FSTY+ Sbjct: 180 KRAREELIKANLRLVISIAKRYVGHGLGFLDLIQEGNIGLMKAVAKFDWKKGYKFSTYSY 239 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I RAI +Q RT+R+P+H+V+ +N R + + P EE++ +DKPVD Sbjct: 240 WWIRQAITRAIADQGRTVRIPVHLVETINRMNRVVNKYIQENGEVPDLEELSVLMDKPVD 299 Query: 208 DVSRMLRLNERITSVDTPLGGD----SEKALLDILADEKENGPEDTTQDDDMKQSIVKWL 263 + +L + I S++ P+ D E +LD + D P++ + ++Q + + Sbjct: 300 KMKEVLISAKNIFSLNAPISNDVDAEGESEVLDFI-DSDSPTPDEEGRKMIIRQKMEMII 358 Query: 264 FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 L+ K+ +L R+G + + TLE+VG +TRER+RQI+ + +R+L+ + + + Sbjct: 359 DTLSPKEAMILKMRYGFVDGKQKTLEEVGEFFNVTRERIRQIESKSIRKLKHPARKKMIE 418 >UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. EuI1c RepID=D1VBD5_9ACTO Length = 424 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 127/335 (37%), Positives = 187/335 (55%), Gaps = 31/335 (9%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE 74 A GVEV +E+ E+ + ++ G D ++YL EIG PLL A Sbjct: 89 ARLVAAGVEVVEEEDGAERSAAPSETGRVTAEHAGTA----DLVRMYLREIGRVPLLNAA 144 Query: 75 EEVYFARRALRG---------------------------DVASRRRMIESNLRLVVKIAR 107 +EV ++R G A++++++ +NLRLVV +A+ Sbjct: 145 QEVELSKRVEAGLFAEHKLATAADLEPELHRDLKLLVRDGEAAKQQLVSANLRLVVSVAK 204 Query: 108 RYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL 167 +Y RG+ LLDL++EGNLGLIRAVEKFD +G++FSTYATWWIRQ I RA+ +Q RTIR+ Sbjct: 205 KYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIGRALADQARTIRI 264 Query: 168 PIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLG 227 P+H+V+++N R R+L L EP+ EE+A +LD P++ V + R + S++T +G Sbjct: 265 PVHVVEQINKITRLQRQLVSTLGREPTDEELALELDMPLEQVVELRRYAQDTVSLETTVG 324 Query: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 D + L D + D P D M+ I L L+ ++REV+ RFGL + T Sbjct: 325 DDGDSVLGDFIEDSDATSPADAASYGAMQDEIDHVLGNLSPREREVMRLRFGLADGKQHT 384 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 L +VG +GLTRER+RQI+ + LR LR+ L Sbjct: 385 LAEVGNRLGLTRERIRQIERDTLRELRKPAVAGRL 419 >UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=Q7NB90_MYCGA Length = 644 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 113/328 (34%), Positives = 195/328 (59%), Gaps = 13/328 (3%) Query: 8 VHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGAT--QRVLDATQLYLGEI 65 + +L ++ E+ VE Q+ S+ D ++L+S+GA+ +V D + +LG + Sbjct: 307 LEELKDNKIKLEDNVEEKISLFRKNQDLSEIDKNLDDLISKGASTKDKVEDNVKAFLGTL 366 Query: 66 GYSPLLTAEEEVYFARRALRGDVASRR----RMIESNLRLVVKIARRYGNRGLALLDLIE 121 G S +L EE+ A+ D +R +++ SNLRLV IA++Y NRGL +DLI+ Sbjct: 367 GSSKILNFGEEIQIAKLLGSTDPETREYAINQLVTSNLRLVTSIAKKYLNRGLDFVDLIQ 426 Query: 122 EGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRT 181 EG++GL++A+ KF+ + G +FSTYATWWIRQ I RAI +Q RT+R+P+H+V+ +N ++T Sbjct: 427 EGSIGLMKAISKFNYKLGNKFSTYATWWIRQAITRAIADQARTVRIPVHMVETINKLIKT 486 Query: 182 ARELSHKLDHEPSAEEIAEQL-----DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLD 236 R L+ +L +P+ EE+ E + V+ + +LN+ S+D P+G D E +D Sbjct: 487 ERMLTQQLGRDPTLEELTEAMGGQVNGFTPKKVADIKKLNQEPVSLDKPIGHDEESQFVD 546 Query: 237 ILADEKENGPEDTTQDDDMKQSIVKW-LFELNAKQREVLARRFGLLGY-EAATLEDVGRE 294 + D P++ T+ + + I + + L K+ +++ R+GL + + TLE+VG++ Sbjct: 547 FVKDRDILKPDEYTEKLIVTEHINELFINTLTKKEEQIIRMRYGLHPWHQQMTLEEVGQK 606 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGL 322 +TRER+RQI+ + LR+L+ + L Sbjct: 607 FNVTRERIRQIESKALRKLKHPSKNARL 634 >UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomycetales RepID=Q0RDY7_FRAAA Length = 373 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 120/296 (40%), Positives = 173/296 (58%), Gaps = 27/296 (9%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRG--------------------------- 86 D ++YL EIG PLL A +EV ++R G Sbjct: 73 TADLVRMYLREIGKVPLLNAAQEVELSKRVEAGLFAEHKLESDPDLPADLRRDLGLLVKD 132 Query: 87 DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 146 A++++++ +NLRLVV +A++Y RG+ LLDL++EGNLGLIRAVEKFD +G++FSTYA Sbjct: 133 GHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKFSTYA 192 Query: 147 TWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPV 206 TWWIRQ I RA+ +Q RTIR+P+H+V+++N R R+L L EP+ EE+A +LD P+ Sbjct: 193 TWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEELALELDMPI 252 Query: 207 DDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFEL 266 + V + R + S++T +G D + L D + D P D M+ I L L Sbjct: 253 EQVVELRRYAQDTVSLETSVGDDGDSVLGDFIEDSDATSPADAASYGAMQDEIENVLGGL 312 Query: 267 NAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 N ++REV+ RFGL + TL +VG +GLTRER+RQI+ + LR LR+ L Sbjct: 313 NPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAGRL 368 >UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacteria RepID=RPOD_RICBR Length = 641 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 100/245 (40%), Positives = 168/245 (68%), Gaps = 1/245 (0%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 +++ R + +++ MIE+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+KF+ RG Sbjct: 378 IQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRG 437 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 ++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N +RT+R++ ++L +EP+ EIA Sbjct: 438 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKIIRTSRQMLNELGYEPTPAEIA 497 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGG-DSEKALLDILADEKENGPEDTTQDDDMKQS 258 +L P+D V +++++ + S++ P+G D L D + D+ P D ++++ Sbjct: 498 ARLSMPIDKVRKVMKIAKEPISLENPVGDGDDNSYLGDFIEDKNAVAPIDAAIQSNLREV 557 Query: 259 IVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318 + L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L+ ++ Sbjct: 558 TTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIR 617 Query: 319 TQGLN 323 ++ LN Sbjct: 618 SKKLN 622 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 11/124 (8%) Query: 10 DLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSP 69 D+ + E D ++ + + + + + E+E + D +LYL ++G Sbjct: 57 DILDTNEDDAIKIDDMEMEEGFKISTNIDHEPEDETEEENIGT-TDDPVRLYLKDMGGVD 115 Query: 70 LLTAEEEVYFARRALRGDVASRRRMIESNLRLVVK-IARRYGNRGLALLDLIEEGNLGLI 128 LLT E EV A+R G R+ +I + L IA + DL+ E N+ L Sbjct: 116 LLTRENEVEIAKRIEEG----RKTLIAA---LCRSPIAMDKFRKW--YADLVNENNMLLR 166 Query: 129 RAVE 132 ++ Sbjct: 167 DLID 170 >UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular organisms RepID=B7K1V2_CYAP8 Length = 379 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 116/354 (32%), Positives = 188/354 (53%), Gaps = 48/354 (13%) Query: 10 DLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSP 69 +L D DE +K D +++ ++ D+ ++YL EIG Sbjct: 30 ELMTDEALDEVMANPEGKKTRKLSASRRRDPNKKKPYTE-------DSIRIYLQEIGRIR 82 Query: 70 LLTAEEEVYFARRALRG----------------------------------------DVA 89 LL AEEE+ AR+ Sbjct: 83 LLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINMEWHAFQRRLYLGRK 142 Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 ++ +M+ SNLRLVV IA++Y NRGL+ DLI+EG+LGLIRA EKFD E+G++FSTYATWW Sbjct: 143 AKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 202 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI +Q+RTIRLP+H+ + ++ +T + LS ++ +P+ EEIA +++ ++ + Sbjct: 203 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKL 262 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + + + S++TP+G + + L D + + PED + +++ + L L+ + Sbjct: 263 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADG-ENPEDEVSKNLLREDLENVLDTLSPR 321 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 +R+VL R+GL TLE++G+ +TRER+RQI+ + LR+LR + L Sbjct: 322 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 375 >UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=D0LP36_HALO1 Length = 697 Score = 327 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 106/256 (41%), Positives = 169/256 (66%), Gaps = 3/256 (1%) Query: 72 TAEEEVYFARRALRGDV---ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLI 128 + EE R G+ ++ ++E+NLRLVV IA++Y NRGL LDLI+EGN+GL+ Sbjct: 438 SVEELRQTFREMSDGERMAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLM 497 Query: 129 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHK 188 +AV+KF+ +RG++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N +RT+R L + Sbjct: 498 KAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLVQE 557 Query: 189 LDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPED 248 L EP+ EEIAE+++ P+D V ++L++ + S++TP+G + + L D + D+ P D Sbjct: 558 LGREPTPEEIAERMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVTSPSD 617 Query: 249 TTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVE 308 ++ + K L L ++ +VL RFG+ TLE+VG++ +TRER+RQI+ + Sbjct: 618 AVISVNLAEQTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAK 677 Query: 309 GLRRLREILQTQGLNI 324 LR+LR +++ L Sbjct: 678 ALRKLRHPSRSKRLKA 693 Score = 42.4 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 20/38 (52%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA 89 R D ++YL ++G LLT E EV A+R G+ Sbjct: 203 SRTSDPVRMYLRKMGSVSLLTREGEVEIAKRIEEGERR 240 >UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptosporangineae RepID=D2AWC8_STRRD Length = 452 Score = 327 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 115/337 (34%), Positives = 180/337 (53%), Gaps = 27/337 (8%) Query: 13 EDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLT 72 E A D AE L + + D+ YL IG LLT Sbjct: 111 EPAAKDRKDAGPEAGDEEWTAPEEAELEAEPTLDLDDQSSVMGDSVHTYLKSIGRRTLLT 170 Query: 73 AEEEVYFARRALRG---------------------------DVASRRRMIESNLRLVVKI 105 A +EV A+R G ++ M+E+NLRLVV + Sbjct: 171 AAQEVELAKRIEAGLYAESKLEAEPGLSAAARDDLEWVAEDGRRAKDHMLEANLRLVVSV 230 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A++Y +RG+ALLD+++EGNLGLIRAVEKFD +G++FSTYA WWIRQ I+R + RTI Sbjct: 231 AKKYTDRGMALLDVVQEGNLGLIRAVEKFDYTKGYKFSTYAMWWIRQAIQRGFADSARTI 290 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 RLP+H+++ L+ R R++ +L EP+ EE+A +LDK D + +LR + + S++ Sbjct: 291 RLPVHVLEMLSKLSRVERDMHQRLGREPTPEELAVELDKTPDQIEELLRTSRQPISLNAT 350 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 +G D E + D++ D + + + + L L+ ++ +++A RFGL+ + Sbjct: 351 IGEDGETTIGDLIEDVDSPEASEVVDRQLLGEQLRGVLGNLSPREAKIMALRFGLVDGKP 410 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 TL+++G+ +GLTRER+RQ++ E L +LR T+ L Sbjct: 411 HTLDEIGKHLGLTRERIRQLEKESLSKLRHPSNTRPL 447 >UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacteria RepID=RPOD_LEPIC Length = 585 Score = 327 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 171/298 (57%), Gaps = 3/298 (1%) Query: 29 ALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDV 88 E+ + + + + L + T +E + + ++G+ Sbjct: 283 EKNEKLDDIEVKMGVNIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGER 342 Query: 89 A---SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTY 145 +++ ++++NLRLVV IA+RY NRG+ DLI+EGN+GLI+AV+KF+ ++G++FSTY Sbjct: 343 EISQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTY 402 Query: 146 ATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKP 205 ATWWIRQ I RAI +Q RTIR+P+H+++++N +R R + +P+ EEIAE+L P Sbjct: 403 ATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWP 462 Query: 206 VDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE 265 V V + + S++ P+G + + L D + D + P + + + I + L Sbjct: 463 VQKVKMVKNVAREPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHT 522 Query: 266 LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 L A++++V+ RFGL TLE+VG + +TRER+RQI+ + LRRLR +++ L Sbjct: 523 LPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLK 580 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 9/101 (8%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEP-------SDNDLAEEELLSQGATQRVLD 56 N+ K+ D E G+E+ +E EP D+ A ++ S +T D Sbjct: 38 NSEKIDDFF--TLLHEMGIEIVEEYTRNTLEPASTLVPKDDSKPARKKKESSASTSGSED 95 Query: 57 ATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIES 97 +LYL EIG L++ E EV+ A+R +G+ ++ S Sbjct: 96 PIKLYLREIGKVSLISGETEVFLAKRIEKGEKIIEETILSS 136 >UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM33_ACIFE Length = 589 Score = 327 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 108/247 (43%), Positives = 164/247 (66%), Gaps = 1/247 (0%) Query: 78 YFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137 R +++ + E+NLRLVV IA+RY RG+ LDLI+EGNLGLI+AVEKFD Sbjct: 339 RLLHRMEFCGDNAKKCLSEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYN 398 Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197 +GF+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R +R+L +L EP+ EE Sbjct: 399 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPEE 458 Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257 IA+++D V+ V + ++ + S++TP+G + + L D + D++ P D +++ Sbjct: 459 IAKEMDVSVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQEAPSPADAASYTLLQE 518 Query: 258 SIVKWL-FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 + K L L+A++R VL RFGL+ TLE+VG+ G+TRER+RQI+ + LR+LR Sbjct: 519 QLGKVLQEHLSARERRVLELRFGLMDGRTRTLEEVGQYFGVTRERIRQIEAKALRKLRSP 578 Query: 317 LQTQGLN 323 +++ L Sbjct: 579 KRSKPLK 585 Score = 55.1 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 7/95 (7%) Query: 2 SQNTLKVHDLNE-DAEFDENGVEVF------DEKALVEQEPSDNDLAEEELLSQGATQRV 54 +++T+ V +++ ++ E +EV +E ++++ D +E LS V Sbjct: 97 NEDTVSVDEMDAIYSKLAEKNIEVVDDGAEDEEPETIDEDELKVDESELANLSVPEGVIV 156 Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA 89 D ++YL EIG PLL ++E+ A+RA +G+ A Sbjct: 157 DDPVRMYLKEIGRVPLLAGDDEIKLAKRADKGNQA 191 >UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamydiales RepID=RPOD_CHLPN Length = 572 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 118/318 (37%), Positives = 186/318 (58%), Gaps = 3/318 (0%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTA- 73 +F E + +D +EQ+ +D + E A +LY E+ L Sbjct: 242 EDFGEVVFKAYDSFLHLEQQINDLKVRAERNKFAAAKLAAA-KRKLYKREVAAGRTLEEF 300 Query: 74 EEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 +++V +R + +++ M+ESNLRLV+ IA++Y NRGL+ LDLI+EGN+GL++AVEK Sbjct: 301 KKDVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEK 360 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 F+ RG++FSTYATWWIRQ + RAI +Q RTIR+P+H+++ +N LR A++L + EP Sbjct: 361 FEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEP 420 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253 + EE+AE+L D V + ++ + S+ +G SE + D L D P + T Sbjct: 421 TPEELAEELGLTPDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGYS 480 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 +K + + L L ++R VL RFGLL + TLE+VG +TRER+RQI+ + LR++ Sbjct: 481 MLKDKMKEVLKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKM 540 Query: 314 REILQTQGLN-IEALFRE 330 R ++++ L L E Sbjct: 541 RHPIRSKQLRAFLDLLEE 558 Score = 47.0 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 4/106 (3%) Query: 20 NGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYF 79 ++V ++ + Q+ + E E L++ D ++YL E+G PLLT EEEV Sbjct: 65 MDIQVLNQIDVERQKEKKKEAKELEGLARRTEGTPDDPVRMYLKEMGTVPLLTREEEVEI 124 Query: 80 ARRALRGDVASRRRMIESNLRLVV---KIARRYGNRGLALLDLIEE 122 ++R + V R+I IA + +I E Sbjct: 125 SKRIEKAQVQI-ERIILRFRYSAKEAISIAHYLISGKERFDKIISE 169 >UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi (class) RepID=A9AU99_HERA2 Length = 391 Score = 326 bits (836), Expect = 8e-88, Method: Composition-based stats. Identities = 122/346 (35%), Positives = 184/346 (53%), Gaps = 33/346 (9%) Query: 13 EDAEFDENGVEVFDEKALVEQEPSDNDLAEE------ELLSQGATQRVLDATQLYLGEIG 66 E +N E+ D E EP ND E ++ V D+ Q+YL EIG Sbjct: 44 ETMNVAKNQPELEDAPEGWELEPGFNDEDVELAIVNLRRKKTLYSEAVEDSVQMYLREIG 103 Query: 67 YSPLLTAEEEVYFARRALRG---------------------------DVASRRRMIESNL 99 LLTAEEE+ A++ G RR++ ++NL Sbjct: 104 EVELLTAEEEITLAKQIETGRKAEHQLQTEQYATWDERTALERRVDFGNEGRRKLTQANL 163 Query: 100 RLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM 159 RLVV +A++Y ++ +DLI+EGN+GL+RAVEKFD +G RFSTYATWWIRQ + RAI Sbjct: 164 RLVVSVAKKYIGNHMSFMDLIQEGNIGLMRAVEKFDYRKGNRFSTYATWWIRQAVTRAIA 223 Query: 160 NQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERI 219 Q+RTIRLP+H+ + + R A +L L E + +E+A+ L + V RML + + Sbjct: 224 EQSRTIRLPVHLSESIAQMRRVAYQLEQALQREATPDELADALGVSLRKVKRMLNASVQP 283 Query: 220 TSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFG 279 S++ P+G + + + + LAD+ + P + ++ + L +L ++R++L R+G Sbjct: 284 VSLEQPIGKEGQGRVGEFLADDTDEAPLEQATRMMLQDELADALSQLPDRERQILLLRYG 343 Query: 280 LLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 L + TLE+VG E G+TRER RQI+ E +R LR+ Q L Sbjct: 344 LADGKRRTLEEVGAEFGITRERTRQIEAEAMRHLRQPNVGQHLRAY 389 >UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicrobia RepID=B1ZU80_OPITP Length = 353 Score = 326 bits (836), Expect = 9e-88, Method: Composition-based stats. Identities = 114/300 (38%), Positives = 186/300 (62%), Gaps = 2/300 (0%) Query: 23 EVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDA-TQLYLGEIGYSPLLTAEEEVYFAR 81 E + + + + L + + ++ + QLYL EIG + LLT +EE+ A+ Sbjct: 15 ETYTAPTVELPDAPPSFLEKPDRVADVPVAHGDRSNLQLYLQEIGKTALLTIDEEISLAK 74 Query: 82 RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 R +GD A+R MI++NLRLVVKIA Y + GL LLDLI EGN+GLI+AVE+FDP +G + Sbjct: 75 RIRKGDKAARDHMIKANLRLVVKIAMDYKDFGLPLLDLISEGNIGLIKAVERFDPRKGGK 134 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 STYA WWI+Q+I+RA+ NQ++TIRLP+H+V +++ RTA L+ +L EP+ EE+A + Sbjct: 135 LSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKISKMRRTAMALTEELGREPTDEELAIE 194 Query: 202 LDKPVDDVSRMLRLNERITSVDTPLGGDSEK-ALLDILADEKENGPEDTTQDDDMKQSIV 260 L P V+ + ++ R S+D P+G + + +I+ D+ P + ++ ++ + Sbjct: 195 LQIPTSKVAHLKSVSVRPASLDAPVGEEGDSATFGEIVGDDNAVSPFEGLREKNLNSDLH 254 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 + L+ ++ E++ RFGL G + TLE+VGR +TRER+RQ++ L ++R+ + Sbjct: 255 AMVASLDEREAEIIRLRFGLDGKDELTLEEVGRRFHVTRERIRQLEYLALSKMRKAMAKH 314 >UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsutsugamushi RepID=B3CQ43_ORITI Length = 615 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 100/278 (35%), Positives = 174/278 (62%), Gaps = 3/278 (1%) Query: 49 GATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA---SRRRMIESNLRLVVKI 105 + ++ +T Y EI + LL + + G+ ++++M+ESN RLVV + Sbjct: 322 SKEKDLIKSTIDYFSEIEQAMLLPLKRFKEIIQAIQNGERKVRVAKKKMVESNTRLVVHV 381 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A+ Y NRGL LDLI+EGN+GL++AV+K++ G++FST ATWW+RQ+I RA+ +Q RTI Sbjct: 382 AKPYVNRGLPFLDLIQEGNIGLMKAVDKYNYLLGYKFSTCATWWVRQSISRAVADQARTI 441 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 R+P+H+ ++ +R ++++ ++L +EP+A EIAE+L P+D V +++R+ + S++ P Sbjct: 442 RIPVHMADTISKIVRVSKQMHNELGYEPTASEIAEKLSMPIDKVKKVMRIAKEPVSLENP 501 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 +G + L D + D+ P + ++++ + L L A++ VL RFG+ Sbjct: 502 IGEEDGSCLSDFIEDKNAILPIEEAIKFSLRETTTRALSTLTAREERVLRLRFGIGLPTD 561 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 TLE+VG E +TRERVRQI+ + LR+L+ ++++ L Sbjct: 562 YTLEEVGGEFKVTRERVRQIEAKALRKLKHPVRSKKLK 599 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 9/119 (7%) Query: 3 QNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQ-GATQRVLDATQLY 61 + + D+N D +FD + V +K E+ ++ E E D + Y Sbjct: 39 SSKISDSDINLDKDFDYTKLGVCPDKIEEEEVVLASNATEGEFEEDLDDNIYSTDIVRAY 98 Query: 62 LGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 L ++ + LL+ E E+ A++ G + +L V+K+ ++ DL+ Sbjct: 99 LKDMSNTTLLSREGEIELAKQMEEGKKTVIHFI--CHLPYVMKLLIQW------YEDLV 149 >UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK63_9BACT Length = 626 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 98/240 (40%), Positives = 162/240 (67%) Query: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143 ++ ++IE+NLRLVV IA++Y NRGL LDLI+EGN+GL++AVEKF+ +RG++FS Sbjct: 383 ENETEKAKSKLIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFEYKRGYKFS 442 Query: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD 203 TYATWWIRQ I RAI +Q RTIR+P+H+++ +N ++ R+L + EP+ EEI+ ++D Sbjct: 443 TYATWWIRQAITRAIADQARTIRIPVHMIETINKMMKITRQLQQDMGREPTPEEISSKMD 502 Query: 204 KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL 263 PV+ + +++++ + S++TP+G D + +L D + D+ P + +K+ + L Sbjct: 503 IPVEKIKKVMKIAKEPVSLETPIGEDEDSSLGDFIEDKSAKNPSEEVTYLKLKEHTKQIL 562 Query: 264 FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 L+ ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR+LR +++ L Sbjct: 563 ETLSHREASVLKLRFGIECDSDHTLEEVGKQFNVTRERIRQIEAKALRKLRHPTRSRILK 622 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 16/97 (16%) Query: 9 HDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQ----------------GATQ 52 +L +D E E+ A ++ + D+ + + L S + Sbjct: 32 ENLPDDILSTELIDEIMMLLAQLKIDVIDSKVDKPGLYSADDDDDDEDSISLLKEVEESI 91 Query: 53 RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA 89 D +LYL E+G LL EEE+ A+ G Sbjct: 92 STDDPVRLYLKEMGNIALLNREEEIEVAKEIEEGQRK 128 >UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E8_9CHLO Length = 595 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 105/338 (31%), Positives = 174/338 (51%), Gaps = 44/338 (13%) Query: 29 ALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALR--- 85 E +++ T++ D+ + YL +IG LLT EEV A+R Sbjct: 243 EANEASAAESRRNRRIARKNADTKKQTDSMKTYLKDIGTVSLLTGAEEVELAKRIQDLMY 302 Query: 86 --------------------------------------GDVASRRRMIESNLRLVVKIAR 107 ++ MI++NLRLVV IA+ Sbjct: 303 LNSVCERLEEENGGKEPTRFMWAIECNITEQELERRLEEGKRAKNAMIQANLRLVVSIAK 362 Query: 108 RYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL 167 RY N+ ++ DLI+EG +GLIR EKFD +RG++FSTYA WWIRQ + R+I +Q+RTIRL Sbjct: 363 RYANKSMSFQDLIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRL 422 Query: 168 PIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL- 226 P+H+ + ++ + R++ KL +P+ EE+A+ ++ V+ + ++ + + S+ + Sbjct: 423 PVHLFEIISRMSKVERQMVLKLGRDPTHEELADAMEMTVEKIKQIKKASLVPISLSQTVN 482 Query: 227 --GGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYE 284 G+ ++ + D L D+ PE T +K+ + L LN ++R+VL R+GL Sbjct: 483 NSNGEDKRTVEDTLIDDYTEHPEGETGKVLLKEDLENVLNTLNPRERDVLRLRYGLDDGR 542 Query: 285 AATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 TLE++G +TRER+RQI+ + LR+LR+ + L Sbjct: 543 VKTLEEIGNVFSVTRERIRQIEAKALRKLRQPSRNGIL 580 >UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B9L102_THERP Length = 509 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 123/282 (43%), Positives = 172/282 (60%), Gaps = 2/282 (0%) Query: 43 EELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA--RRALRGDVASRRRMIESNLR 100 E L QR D + L I L + A +R R A+RR++ E+NLR Sbjct: 223 EFALFPEPLQRWCDPLERRLPPIPPLNELGLDRTALIAHWQRLRRDGEAARRKLTEANLR 282 Query: 101 LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 LVV IA+RY RGL LLDLI+EGNLGL+RAV+KF +GF+FSTYATWWIRQ I RA+ + Sbjct: 283 LVVSIAKRYTGRGLTLLDLIQEGNLGLMRAVDKFQTHKGFKFSTYATWWIRQAITRALAD 342 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERIT 220 RTIRLP+H+V+ LN R AR+L+ +L EP+ E+A ++ P+D + +L+ + Sbjct: 343 HARTIRLPVHLVETLNRVSRVARQLTQELGREPTTSELAAAVNMPLDRLRELLQAAQDPV 402 Query: 221 SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL 280 S++ P+G + E L D L DE+ P D +++ + L L ++R VLA RFGL Sbjct: 403 SLEAPVGQEEESTLGDFLEDERAVAPLDAAALSLLREQVQSLLATLTERERRVLAMRFGL 462 Query: 281 LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 + TLE+VGR G+TRERVRQI+ + LR+LR + + L Sbjct: 463 EDGQTYTLEEVGRAFGVTRERVRQIEAKALRKLRHPQRARAL 504 Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 21/115 (18%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE 74 AE GV V E+AL S + E+E V D +LYL EIG PLLTAE Sbjct: 67 AELQAEGVPVAIEEALEPDGTSRSWEPEKE---ADPDLLVEDPVRLYLAEIGRVPLLTAE 123 Query: 75 EEVYFARRAL-----------RGD------VASRRRMIESNLRLVVKIARRYGNR 112 +EV R GD +A+ R + LV ++A+R + Sbjct: 124 QEVELGRAVELAEYLDELRRCCGDDPLVLLLAAWERFVTGW-PLVERLAQRLPGK 177 >UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteobacteria RepID=Q1QBP8_PSYCK Length = 648 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 102/249 (40%), Positives = 162/249 (65%), Gaps = 3/249 (1%) Query: 77 VYFARRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 ARR G+ +RR M+E+NLRLV+ IA++Y NRGL LDLI+EGN+GL++AV+K Sbjct: 393 KDVARRMAIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 452 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 F+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N R +R+L ++ EP Sbjct: 453 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINRVSRQLLQEMGREP 512 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253 + EE+ E+L+ V ++L++ + S++TP+G D + L D + D + P D Sbjct: 513 TPEELGERLEMDEAKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGTISSPVDDATAA 572 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 ++++ L L ++ VL RFG+ TLE+VG++ +TRER+RQI+ + LR+L Sbjct: 573 GLREATRDVLGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKL 632 Query: 314 REILQTQGL 322 R +++ L Sbjct: 633 RHPSRSEHL 641 Score = 42.8 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%) Query: 48 QGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRM 94 + R D ++Y+ E+G LLT E E+ A+R G + M Sbjct: 102 ETEPGRTTDPVRMYMREMGTVDLLTREGEIAIAKRIEEGIRDVQHAM 148 >UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R064_9DELT Length = 555 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 103/327 (31%), Positives = 170/327 (51%), Gaps = 11/327 (3%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 + +N L D F ++ + + + + Sbjct: 232 IDRNRKAQAALFADDRFSAKHLQAMVRLLRELESKLIGPKPGGQDQDAALQEWHFTCLEQ 291 Query: 61 YLGEIGYSPLLTAEEEVYFARRA---LRGDVASRRRMIESNLRLVVKIARRYGNRGLALL 117 Y L +E + ++ R+++SNLRLVV +A++Y RGL LL Sbjct: 292 Y--------GLDRQELSALLAQISLGEEISREAKNRLVQSNLRLVVSVAKKYAGRGLQLL 343 Query: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177 DL++EGN+GL++AVEKF+ RG++FSTYATWWIRQ + RAI +Q RTIR+P+H++ +N Sbjct: 344 DLVQEGNIGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQGRTIRIPVHMIDTINR 403 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 L+ A+E + EP+ EE+AE L + V +L++ + S+DTP+G + L D Sbjct: 404 MLKGAKEYQRQHGREPTPEEMAEHLGVDIAKVKSILKIAKEPLSLDTPVGSGEDSFLSDF 463 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 + D P++ T D ++ ++ + L L ++ VL RFG+ TLE+VG + Sbjct: 464 IEDADSTSPDEATIYDSLQDNLARVLKTLTPREEMVLRLRFGIDTATDLTLEEVGENFSV 523 Query: 298 TRERVRQIQVEGLRRLREILQTQGLNI 324 TRER+RQI+ + L++L+ + L+ Sbjct: 524 TRERIRQIEAKALKKLKHPTRKSILSP 550 Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 50/109 (45%), Gaps = 2/109 (1%) Query: 14 DAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTA 73 + + G ++ + D+++ + + +D ++YL E+G LL++ Sbjct: 66 EDDDTSAGADLPGNYRADNDDDGDDEVGDPYFWPGESATDQVDPVKVYLQEMGAVALLSS 125 Query: 74 EEEVYFARRALRGDVASRRRMIES--NLRLVVKIARRYGNRGLALLDLI 120 EEEV A+ RG+ + ++ + L + +IA++ + L D++ Sbjct: 126 EEEVAVAKEIERGERTIQDALVIAPPALAYLDEIAKKIQHGNRMLSDIV 174 >UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellular organisms RepID=RPOD1_SYNE7 Length = 399 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 112/337 (33%), Positives = 185/337 (54%), Gaps = 41/337 (12%) Query: 27 EKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALR- 85 + E +++ A + ++ D+ +LYL EIG LL A+EE+ AR+ Sbjct: 60 DAIDDEDSVGEDEDAAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADL 119 Query: 86 ---------------------------------------GDVASRRRMIESNLRLVVKIA 106 ++ +M++SNLRLVV IA Sbjct: 120 LALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIA 179 Query: 107 RRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIR 166 ++Y NRGL+ DLI+EG+LGLIRA EKFD E+G++FSTYATWWIRQ I RAI +Q+RTIR Sbjct: 180 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 239 Query: 167 LPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL 226 LP+H+ + ++ +T + LS ++ +P+ EEIA +++ ++ + + + + S++TP+ Sbjct: 240 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 299 Query: 227 GGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAA 286 G + + L D + + PED + +++ + L L+ ++R+VL R+GL Sbjct: 300 GKEEDSRLGDFIEADG-ETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMK 358 Query: 287 TLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 TLE++G+ +TRER+RQI+ + LR+LR + L Sbjct: 359 TLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILK 395 >UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NY91_9DELT Length = 540 Score = 323 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 97/250 (38%), Positives = 159/250 (63%) Query: 74 EEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 E R ++ R++++NLRLVV +A++Y RGL LLDLI+EGN+GL++AVEK Sbjct: 286 AEIQAGIARGQEVSQEAKNRLVQANLRLVVSVAKKYAGRGLQLLDLIQEGNIGLMKAVEK 345 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 F+ RG++FSTYATWWIRQ + RAI +Q RTIR+P+H++ +N L+ A+E + EP Sbjct: 346 FEYRRGYKFSTYATWWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEFQRQHGREP 405 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253 + +E+A+ L V V +L++ + S+DTP+G ++ L D + D + P++ T + Sbjct: 406 TPDEMAQHLGVEVAKVKSVLKIAKEPLSLDTPVGNSNDSFLADFIEDTEAASPDEATIYE 465 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 +++ ++ + L L+ ++ VL RFGL TLE+VG +TRER+RQI+ + L++L Sbjct: 466 NLQSNLRRVLKTLSPREEMVLRLRFGLDTAMDLTLEEVGENFAVTRERIRQIEAKALKKL 525 Query: 314 REILQTQGLN 323 + + L+ Sbjct: 526 KHPARRNQLS 535 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 37/80 (46%) Query: 18 DENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEV 77 DE+G E A E E + + +D ++YL E+G PLL+ EEE+ Sbjct: 60 DEDGDEHAPAAAQDEASDGAGADDEPYVWPGDSGGDQVDPVKVYLQEMGSVPLLSTEEEI 119 Query: 78 YFARRALRGDVASRRRMIES 97 AR G++ ++ ++ + Sbjct: 120 AVAREIEAGELLIQQALLTA 139 >UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8E5_COPPD Length = 360 Score = 323 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 119/328 (36%), Positives = 198/328 (60%), Gaps = 13/328 (3%) Query: 1 MSQNTLKVHDLNED---AEFDENGVEVFDEKALV--EQEPSDNDLAEEELLSQGATQRVL 55 + N+L DL+ D +E G+ + E+ + E + L EEE ++V Sbjct: 33 LLINSLNPEDLDVDEIDMFLEEKGISIIPEEPRIYGENVSYEQGLPEEE-------EQVR 85 Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 + Q+YL ++G LLTAE+E A+R + D A+R +I+ NLRLV+ IA++Y N+GL+ Sbjct: 86 ELMQVYLHDVGQYDLLTAEQERILAQRIEKNDAAAREELIKRNLRLVISIAKKYTNKGLS 145 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 ++LI+EGN+GLI+AVEKFD +G++FSTYATWWI+Q I RA+ +Q+R IR P+H+V+ Sbjct: 146 FMELIQEGNIGLIKAVEKFDWRKGYKFSTYATWWIKQAITRALADQSRLIRRPVHMVEAY 205 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNE-RITSVDTPLGGDSEKAL 234 + + + EL ++L EP+ +E+AE L D V + +++ S+D +G + + Sbjct: 206 HQFQKKLNELYNQLGREPTVQELAEALGFSEDKVLALKQMSNPEPQSLDATIGDQDDSRV 265 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 D + D E + +++ ++ + + L LN ++RE++ R+GL+ TLE+VG Sbjct: 266 QDFVPDTGEGAADKYFWEEERRRVLEEVLSTLNKREREIIEMRYGLVDGVEHTLEEVGAS 325 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGL 322 +TRERVRQI+ + LR+LR + + L Sbjct: 326 FNITRERVRQIETKALRKLRHPTRIRKL 353 >UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi (class) RepID=A5UQ16_ROSS1 Length = 541 Score = 322 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 108/243 (44%), Positives = 159/243 (65%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 A+ +R + ++NLRLVV +A++Y RGL LLDLI+EGN+GLIRAVEKFD +G Sbjct: 294 WNLAIDQGKTAREDLTQANLRLVVSVAKKYIGRGLQLLDLIQEGNVGLIRAVEKFDYRKG 353 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 F+FSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N +R +R + +L EP+ EE++ Sbjct: 354 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEELS 413 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 L PVD V + + + S++TP+G + + L D + D K P D +++ + Sbjct: 414 RALGIPVDKVRSIRKTSLEPVSLETPVGQEEDSQLGDFIEDSKVLAPSDAASHQMLREQV 473 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 + L +L ++R VL RFGL + TLE+VG+E G+TRER+RQI+V+ LR+LR Sbjct: 474 EQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRLG 533 Query: 320 QGL 322 + L Sbjct: 534 KKL 536 Score = 42.0 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%) Query: 33 QEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG 86 + + + V D ++YL EIG PLL A +E+ A++ G Sbjct: 95 EIDIPFEEEGDFDDLNVEGISVNDTVRMYLREIGRVPLLNARQEILLAQKIEIG 148 >UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQZ1_9GAMM Length = 359 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 168/309 (54%), Positives = 219/309 (70%) Query: 20 NGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYF 79 V+ ++ + D+ + A LDA Q+YL +I Y PLLT EEE + Sbjct: 48 EEVDDVPAPEDEKELSPEQDVPVRPRTLRDARPAELDAIQIYLRDIEYRPLLTPEEERKY 107 Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 AR A GD + RRRMIE NLRLVVKIARRY NRGL LLDLIEEGNLGL+ AVEKFDPERG Sbjct: 108 ARLARDGDESGRRRMIECNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMHAVEKFDPERG 167 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 FRFSTYATWWIRQTIERA+MNQ RTIR+P+H+ KEL ++ R AR L+ +L +P+ EE+A Sbjct: 168 FRFSTYATWWIRQTIERALMNQGRTIRIPVHVSKELRMHARIARNLTQELGRDPTEEELA 227 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 ++L KPV D+ ++ ++E TS+D P G D E++L DILAD P +D D++ + Sbjct: 228 QRLGKPVADIQKLRAMSEPSTSMDLPPGPDGERSLTDILADVNAQEPSSLLEDQDIQHLV 287 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 +WL EL+ KQREVL RRFGL G+E +TLE VG EIG+TRERVRQIQ++ L+RLR +L++ Sbjct: 288 DEWLGELDYKQREVLVRRFGLHGFERSTLEQVGAEIGVTRERVRQIQMDALKRLRRLLES 347 Query: 320 QGLNIEALF 328 +G+ + + Sbjct: 348 RGMKGDEVL 356 >UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasmataceae RepID=B1VAH4_PHYAS Length = 476 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 110/326 (33%), Positives = 182/326 (55%), Gaps = 34/326 (10%) Query: 32 EQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVY------FARRALR 85 E +P D+ ++E + + ++ D+ ++YL EIG PLL+ EEE + A + Sbjct: 146 EIDPEDDKFSKENITKINSDIKIDDSVRMYLKEIGRIPLLSKEEEQKKTFAVFLGKEAKK 205 Query: 86 G------------DVA-------------SRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 D ++ ++ESN RLVV IA+RY RG+ LDLI Sbjct: 206 KLTKFRNQEIDLSDQEVKQLESQIIQANQAKDVLVESNYRLVVSIAKRYIGRGVLFLDLI 265 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 +EGN+GL+RAV+KFD ++G R STYAT+W+ Q + RAI +Q RTIR+P+HIV+ +N Sbjct: 266 QEGNMGLMRAVDKFDYQKGLRLSTYATYWVIQGVTRAIADQARTIRIPVHIVETINKMSL 325 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG--DSEKALLDIL 238 R+L+ +L +P+ EE+AE+++ P D + + + ++ S++ P + E +L D + Sbjct: 326 CTRKLTQELKKKPTIEELAEKMNIPADKLRSIQYIEKKPISLEVPPAENKEDETSLGDFI 385 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLF-ELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 +D P + + ++ + + L L ++ +VL R+G L + TLE++G G+ Sbjct: 386 SDPNVLSPHEYMMKEVTQKLLDEVLENTLTEREEKVLKMRYGFLDGKVYTLEEIGNLFGV 445 Query: 298 TRERVRQIQVEGLRRLREILQTQGLN 323 TRER+RQI+ + LRRLR + L Sbjct: 446 TRERIRQIESKALRRLRTPAKQSKLK 471 >UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacteria RepID=RPOD_MYXXA Length = 708 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 116/330 (35%), Positives = 193/330 (58%), Gaps = 19/330 (5%) Query: 7 KVHDLNEDAE--FDENGVEVFDEKALVEQEPSDND-LAEEELLSQGATQRVLDATQLYLG 63 K D D E +D + E+ + + P+ L ++ L+ + + + + Sbjct: 378 KAEDELRDLERRYDCSMKELRPQLKESRENPNIGKKLQKQLNLTPEQLEVLDRDVRTAVR 437 Query: 64 EIGYSPLLTAEEEVYF-----------ARRALRGDVASRRRMIESNLRLVVKIARRYGNR 112 +I EEE R R ++ ++E+NLRLVV IA++Y NR Sbjct: 438 KIKKV-----EEEANLPVESLRRNYDAIRLGERRAERAKSELVEANLRLVVSIAKKYTNR 492 Query: 113 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172 GL LDLI+EGN+GL++AV+KF+ +RG++FSTYATWWIRQ I RAI +Q RTIR+P+H++ Sbjct: 493 GLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMI 552 Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232 + +N +RT+R L ++ EP+ EEIAE+++ P+D V ++L++ + S++TP+G + + Sbjct: 553 ETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDS 612 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 L D + D+ P D + ++ + K L L ++ +VL RFG+ TLE+VG Sbjct: 613 HLGDFIEDKSLVSPADAVINMNLAEQTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVG 672 Query: 293 REIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++ +TRER+RQI+ + LR+LR +++ L Sbjct: 673 QDFEVTRERIRQIEAKALRKLRHPSRSKRL 702 Score = 42.8 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%) Query: 9 HDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS 68 + E + + + + +E ++ +E+ + D +LYL ++G Sbjct: 150 DNDIEIVDAQKAAQNNEIKPTVTVEEEKEDADEDEKDEDDEPGGKSNDPVRLYLRKMGSV 209 Query: 69 PLLTAEEEVYFARRALRGDVASRRRM 94 LLT E EV A+R G+ R + Sbjct: 210 SLLTREGEVEIAKRIEDGEKEVLRAL 235 >UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0R030_BRAHW Length = 587 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 103/329 (31%), Positives = 189/329 (57%), Gaps = 6/329 (1%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDAT-- 58 ++Q L + + + E + ++ + L +E ++ A + V+ + Sbjct: 254 INQIEEYFEKLKKRYYKEISDFENYYKEIESGNKDIYIRLVDEFNITPEAIEAVITSFHK 313 Query: 59 -QLYLGEIGYSPLLTAEEEVYFARRA---LRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 Q+ + +I + E V + R+ R ++ ++++NLRLV+ IA++Y NRGL Sbjct: 314 AQVRMADIYDEVRIDKETLVEWVRKIDSSRRKIAQAKDHIVKANLRLVIAIAKKYVNRGL 373 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 DL++EGN+GLI+AV+KF+ ++G++FSTYATWWIRQ I R+I +Q RTIR+P+H++++ Sbjct: 374 HFFDLVQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQ 433 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKAL 234 +N R R+ + EPS +EIA+ L P V + + + S++ P+G + + L Sbjct: 434 INKVQRVLRQYMQQHGREPSIQEIAKALSWPESRVKSVRNVAKDPVSLNAPIGDEEDTIL 493 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 +++ D++ P++ T +++ I L L ++++V+ RFGL+ + TLE+VG Sbjct: 494 GELIEDKEFESPQNITTFKILRKQIDSILDSLPDREQKVIRMRFGLVDGYSHTLEEVGYV 553 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGLN 323 +TRER+RQI+ + +RRLR + + L Sbjct: 554 FKVTRERIRQIEAKAIRRLRAQSKKKELK 582 Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%) Query: 22 VEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFAR 81 VE E + + + D A + + + D +LYL EIG LLT ++EV +++ Sbjct: 62 VEDKREFESLSKNQNKIDDAAKFIHVEDKVGNNDDPIRLYLKEIGKVSLLTHDDEVDYSK 121 Query: 82 RALRGDVASRRRMIESNL 99 + G+ ++ ++L Sbjct: 122 KIESGESEIENIILNTHL 139 >UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L243_HALNC Length = 343 Score = 319 bits (819), Expect = 7e-86, Method: Composition-based stats. Identities = 158/315 (50%), Positives = 226/315 (71%) Query: 14 DAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTA 73 D +E + V D + + + + + E + +D +LYL ++ LLTA Sbjct: 27 DPVDEEELLAVDDVELDDDIDSPEKNEEELTTTFSASDSESVDPVRLYLRDVETERLLTA 86 Query: 74 EEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 EEEV ++RRA GD ++R++MI NLRLV+KIARRY NRGL LLDLIEEGN+GL+RAVEK Sbjct: 87 EEEVIYSRRAQSGDESARQKMIVCNLRLVIKIARRYMNRGLDLLDLIEEGNIGLMRAVEK 146 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 FDPERGFRFSTYATWWIRQTIER +MNQ+RT+RLP+H+VKE++ + R AR+++ + E Sbjct: 147 FDPERGFRFSTYATWWIRQTIERGLMNQSRTVRLPVHVVKEVHTFNRAARKIAQNQNAEV 206 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253 +AE+IA+ LD+PV++V +++ NER +S D+PL GD E +LLD++ D++ N P++ QD Sbjct: 207 TAEQIADHLDRPVNEVLKIMAFNERQSSFDSPLKGDGEFSLLDLIPDQESNQPDELLQDA 266 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 + + + + +L +KQREVL RR+GL GYE TLE+VG +G+TRERVRQIQ+E +RRL Sbjct: 267 GVHGFLDQLIAQLESKQREVLVRRYGLRGYETHTLEEVGNHLGVTRERVRQIQLEAVRRL 326 Query: 314 REILQTQGLNIEALF 328 + + + G+ E +F Sbjct: 327 KSLAKKAGVTAEVIF 341 >UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromonadales RepID=B9M4Z2_GEOSF Length = 358 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 133/307 (43%), Positives = 198/307 (64%) Query: 19 ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVY 78 E VE + +E +++ EEE + + DA +LYL EI + LLTA+EE Sbjct: 46 EPEVEPDAVELEQVEEVEEHEEVEEEEIKVAVVEHFDDAIKLYLREIQKTKLLTADEEKE 105 Query: 79 FARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPER 138 A R RGD A+R +MIESNLRLVVKIA+RY NRGL LDLIEEGN+GLI+AVE+F + Sbjct: 106 LAARIDRGDKAARDKMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERFKLSK 165 Query: 139 GFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEI 198 RFSTYATWWIRQ+IERA++NQ+RTIRLP+H+ ++N LR REL K++ EPS +E+ Sbjct: 166 ECRFSTYATWWIRQSIERALVNQSRTIRLPVHVSDDINKMLRITRELLQKINREPSIKEV 225 Query: 199 AEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQS 258 A ++ + R++ L ++ S++ P+G +++ L+D + D P + +D + + Sbjct: 226 ATAMEVNSAYIRRLMVLLKKTYSIERPMGENNDYFLIDTIEDTSTVSPAELLEDVNRYEM 285 Query: 259 IVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318 + KW L+ ++++L RFGL + TL+ +GR G+TRER+RQI+ + L +LR+I++ Sbjct: 286 VSKWFDTLSDNEKKILTLRFGLDDKDPQTLDTIGRSFGVTRERIRQIEAKSLEKLRKIME 345 Query: 319 TQGLNIE 325 L Sbjct: 346 ATELAAR 352 >UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia RepID=Q5GSP3_WOLTR Length = 649 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 99/305 (32%), Positives = 175/305 (57%), Gaps = 3/305 (0%) Query: 21 GVEVFDEKALVEQEPSDNDLAEEELLS--QGATQRVLDATQLYLGEIGYSPLLTAEEEVY 78 +E E + + + + + + D I + +E + Sbjct: 341 KLEEISSLKSSENQFCFTGELKNKFVKFIDDNFEHIADTLNNIKQHIQEDNVQEFKELIK 400 Query: 79 FARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPER 138 ++ R +++ MI++NLRLVV IA++Y NRGLALLDLI+EGN+GL++AV+KFD +R Sbjct: 401 RTQKHEREVSEAKQGMIKANLRLVVSIAKKYSNRGLALLDLIQEGNIGLMKAVDKFDYKR 460 Query: 139 GFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEI 198 G++FSTY TWW+RQ+I RAI Q++ +R+P+H+V+ ++ R R+L+H++ EP+ EE+ Sbjct: 461 GYKFSTYGTWWVRQSITRAIPEQSKVVRIPVHMVEIISKINRALRKLTHEMGREPTLEEL 520 Query: 199 AEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQS 258 + +L P++ + +++++ S+D P G D D + D++ + PED D++ Sbjct: 521 SMELGMPLERIRKVMKIARDPVSLDAPTGKDDSSTFGDCIEDKRVSKPEDAAILTDLRCI 580 Query: 259 IVKWLFELNAKQREVLARRFGLL-GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 L L K+ ++ RFGL + TLE++G +TRER+RQ++ + LR+L+ Sbjct: 581 TTNLLATLTPKEERIIRMRFGLGKDCKEHTLEEIGCIFKVTRERIRQVESKALRKLKHPC 640 Query: 318 QTQGL 322 + + L Sbjct: 641 RARKL 645 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 35/87 (40%) Query: 10 DLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSP 69 L +D+ + +E+A + S D + + + D ++YL ++ Sbjct: 52 SLLQDSGINILESSEDEEEAPSNSDDSKLDDDDALSNTTTTLVQNDDPVRVYLQDMSSVK 111 Query: 70 LLTAEEEVYFARRALRGDVASRRRMIE 96 LL+ +E+ A++ R +IE Sbjct: 112 LLSRTDEIEIAKKIESEKHNMLRAIIE 138 >UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium caldarium RepID=Q39515_CYACA Length = 591 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 119/363 (32%), Positives = 186/363 (51%), Gaps = 48/363 (13%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLG 63 +T+ V ++ ++E +E ++ ++ L + + + + D + YL Sbjct: 228 STVPVEEVYSNSETEEAESQIESDELLD----FIVEEVDPADVDLSTVEAKDDTIRSYLR 283 Query: 64 EIGYSPLLTAEEEVYFARRA---------------------------------------- 83 EIG LL EE+ +++ Sbjct: 284 EIGRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCGYGDDVEKLR 343 Query: 84 --LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 +R ++ RM+ +NLRLVV IA+RY NRG+AL DLI+EG++GLIR VEKFD ERGFR Sbjct: 344 EHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAERGFR 403 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 FSTYATWWIRQ+I RAI + +R+IRLP+H+ +++ + + L +L PS EEI E Sbjct: 404 FSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEEEICES 463 Query: 202 LDKPVDDVSRMLRLNERITSVDTPLGGDSEKA-LLDILADEKENGPEDTTQDDDMKQSIV 260 + ++ + I S++TPL + L + L E E+ D +++SI Sbjct: 464 VGIDRAKYRLVMECSRNIVSLETPLRSGDDVHFLGESLIAP-EERAEENCSRDTLRESIE 522 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 K L L+ ++REV+ RFGL TLE+VG +TRER+RQI+ + L++LR + Sbjct: 523 KVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKALKKLRTPAENN 582 Query: 321 GLN 323 L+ Sbjct: 583 FLD 585 >UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB24_THET1 Length = 463 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 104/243 (42%), Positives = 160/243 (65%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 + + ++ ++IE+N RLVV IA++Y RGL+LLDLI+EGN+GL+RA +KFD RG Sbjct: 215 WNKVRKEGEGAKCKLIEANTRLVVSIAKKYLGRGLSLLDLIQEGNIGLMRAADKFDYTRG 274 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 ++FSTYATWWIRQ + RAI +Q+RTIRLP+H+ + ++ +T+++L +L HEP+ E+++ Sbjct: 275 YKFSTYATWWIRQAVTRAIADQSRTIRLPVHVCETVSKIHKTSQKLQQELGHEPTIEQLS 334 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 +L P+ V ++ + ++ S++ P+G D + L D L D P +D +++ I Sbjct: 335 SELGMPMKKVVQIQQASKFPVSLEAPIGEDGDSMLGDFLEDVHVLNPVQKAANDILREQI 394 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 L L K+R+VL RFGL+ + TLE+VG E +TRERVRQI+ LRRLRE Sbjct: 395 NSVLQNLPPKERKVLELRFGLVDGKCRTLEEVGNEFAITRERVRQIECTALRRLRENHLI 454 Query: 320 QGL 322 + L Sbjct: 455 KQL 457 Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 24 VFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRA 83 F + A + + +DL++ E + +G + + Q+YL EIG PLLTAE+EV AR+ Sbjct: 39 EFSDDATNDVDQEGSDLSDLEHI-EGYADDLDEPVQMYLREIGKVPLLTAEQEVILARKI 97 Query: 84 L 84 Sbjct: 98 E 98 >UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacteria RepID=C6X620_FLAB3 Length = 294 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 100/280 (35%), Positives = 167/280 (59%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 +++ T R + YL EIG L+TA+EEV A++ GD + ++I++NLR VV + Sbjct: 12 ITKQVTNRETASLDKYLQEIGKVDLITADEEVDLAQKIRAGDRVALEKLIKANLRFVVSV 71 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 +++Y N+GL+L DLI EGNLGL++A +++D RGF+F +YA WWIRQ+I +A+ Q+R + Sbjct: 72 SKQYQNQGLSLPDLINEGNLGLMKAAKRYDETRGFKFISYAVWWIRQSILQALAEQSRIV 131 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 RLP++ + +N + L + + PS EE+AE LD DD+ ++ + R S+D P Sbjct: 132 RLPLNKIGSINKINKAYAHLEQENERPPSPEELAEVLDMSEDDIKESMKNSGRHLSMDAP 191 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 L + L D+L + P+ + ++ I + L L ++ +++ FGL G Sbjct: 192 LVEGEDSNLYDVLRSGESPSPDKELMLESLQIEIERALQTLTPREADLVRLYFGLNGKHP 251 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 TLE++G LTRERVRQI+ + ++RL+ +++ L Sbjct: 252 MTLEEIGETFDLTRERVRQIKEKAIKRLKHNTRSKILKSY 291 >UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia RepID=C0R506_WOLWR Length = 650 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 94/253 (37%), Positives = 162/253 (64%), Gaps = 4/253 (1%) Query: 74 EEEVYFARRALRGDVA---SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRA 130 +E +R + + +++ MI++NLRLVV IA++Y RGL LLDLI+EGN+GL++A Sbjct: 394 QEFKELIKRIQKHEREVSEAKQEMIKANLRLVVSIAKKYSKRGLDLLDLIQEGNIGLMKA 453 Query: 131 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLD 190 V+KFD +RG++FSTY TWW+RQ+I RAI Q++ +R+P+H+V+ ++ R R+++H++ Sbjct: 454 VDKFDYKRGYKFSTYGTWWVRQSITRAIPEQSKVVRIPVHMVEIISKINRALRKMTHEMG 513 Query: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT 250 EP+ EE++ +L P++ + +++++ S++ P G D D + D++ + PED Sbjct: 514 REPTLEELSVELTMPLERIRKVMKIARDPVSLEAPTGKDDSSTFGDCIEDKRVSRPEDAA 573 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLL-GYEAATLEDVGREIGLTRERVRQIQVEG 309 D++ L L K+ +L RFGL + TLE+VG+ +TRER+RQI+ + Sbjct: 574 ILADLRGITTNVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKA 633 Query: 310 LRRLREILQTQGL 322 LR+L+ + + L Sbjct: 634 LRKLKHPSRARKL 646 Score = 43.5 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 7/94 (7%) Query: 10 DLNEDAE--FDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQ-----RVLDATQLYL 62 D +DA ++G+ V + E PS++D ++ + + D ++YL Sbjct: 45 DFIDDAISLLQDSGINVLESSEDEEDIPSNSDDSKLDDDDTSPNVTATLVQNDDPVRIYL 104 Query: 63 GEIGYSPLLTAEEEVYFARRALRGDVASRRRMIE 96 ++ LL+ +E+ A++ R +IE Sbjct: 105 QDMSSVKLLSRADEIEIAKKIESEKHNMLRAIIE 138 >UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacterium prausnitzii RepID=C7H329_9FIRM Length = 461 Score = 316 bits (810), Expect = 7e-85, Method: Composition-based stats. Identities = 106/246 (43%), Positives = 157/246 (63%), Gaps = 1/246 (0%) Query: 71 LTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRA 130 LT E + R + +RR + E+NLRLVV IA+++ LA LDLI+EGN+GLI+A Sbjct: 206 LTEERRQELLK-IRRDGLNARRSLSEANLRLVVSIAKKHVGHNLAFLDLIQEGNIGLIKA 264 Query: 131 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLD 190 EKFD +RGFRFSTYATWWIRQ I RAI +Q RTIR+P+H+V+ +N + +L ++ Sbjct: 265 AEKFDCDRGFRFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMRQATNQLVYQNG 324 Query: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT 250 HEP+ EE+A+ +D V+ V + R+ + S+++P+G + + +L D +ADE P Sbjct: 325 HEPTPEELAKAMDMSVERVREIQRMAQEPASLESPVGEEEDSSLGDFVADENAEAPGKAA 384 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310 + Q I + L L ++ +V+ RFGL TLE+VGR+ G+TRERVRQI+ + + Sbjct: 385 DRAMVAQQINQALKSLTPREEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAI 444 Query: 311 RRLREI 316 R+L Sbjct: 445 RKLHSR 450 Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLG 63 +L V + + E E + E +P++ + A+ L + + D + YL Sbjct: 55 TSLDVEGIMAEVESAEANSDELGLGDENEDDPAEENPAD---LKAAMDELLDDPVKNYLK 111 Query: 64 EIGYSPLLTAEEEVYFARRALRGDVAS 90 +IG PLL+AE+EV ++R G A+ Sbjct: 112 QIGQIPLLSAEQEVDLSKRIHAGAEAA 138 >UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKM1_THEYD Length = 479 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 112/326 (34%), Positives = 184/326 (56%), Gaps = 7/326 (2%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 +S+ +++ +L D E E ++ + + ++ ++ E + + Sbjct: 147 LSRTIIRLENLINDIEKIEQKIKEYGSLKELRKQINEKKRVGENT---KQLENLYKEIHA 203 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGD---VASRRRMIESNLRLVVKIARRYGNRGLALL 117 + +I L +E ++ + ++ +I NLRLVV IA+ Y RGL LL Sbjct: 204 EIKKIENESGLKIDELKNIWQKIYKAKCLVEDTKNELITRNLRLVVNIAKNYVGRGLPLL 263 Query: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177 DLIEEGN+GL++AV+KF E+GF+FSTYATWWIRQ I RA+++QT+TIR+P+H+++ N Sbjct: 264 DLIEEGNIGLMKAVDKFKYEKGFKFSTYATWWIRQAITRALIDQTKTIRVPVHMMEFYNR 323 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 + +REL+ +L EP+ EEIAE+L PV V + R + + TP+G D + L D Sbjct: 324 VTKASRELTQQLGREPNNEEIAEKLGVPVRKVEEVFRAIQDPIGLQTPIG-DEDTELEDF 382 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 + D+ P + ++ + I + L L K+ +V+ RFG+ TLE+VGR + + Sbjct: 383 IGDKTSPSPVSEAERTELSEHIQRILKTLTPKEEKVIKMRFGIGEDRDHTLEEVGRYLSI 442 Query: 298 TRERVRQIQVEGLRRLREILQTQGLN 323 TRERVRQI+ + LR+L+ + + L Sbjct: 443 TRERVRQIETKALRKLKHPSRMRLLK 468 Score = 40.4 bits (94), Expect = 0.079, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 1/92 (1%) Query: 2 SQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLY 61 N + E ++ ++V + + + + ++ EE + V D Q Y Sbjct: 24 EINEALPSEYYSPEEIEDL-IDVLSDMGVRVVDEDEEEVFLEEEEEIEEEEHVEDLVQAY 82 Query: 62 LGEIGYSPLLTAEEEVYFARRALRGDVASRRR 93 +G P+LT EEEV A++ G + Sbjct: 83 FNSMGDIPILTKEEEVELAKKLQEGKSIIKET 114 >UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyanobacteria RepID=RPOD4_SYNE7 Length = 311 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 125/310 (40%), Positives = 178/310 (57%), Gaps = 23/310 (7%) Query: 39 DLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRAL-------------- 84 ++ E L+ + D YL IG PLLTAEEEV +R+ Sbjct: 2 NVQERRNLNAAVERHTSDHVSWYLSSIGRIPLLTAEEEVELSRKVQLMMALLENPDAESN 61 Query: 85 -------RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137 + ++ +M+++NLRLVV +A++Y N+GL LLDLI+EG+LGL RAVEKFDP Sbjct: 62 SENQAVLQAGQRAKTKMLKANLRLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPA 121 Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197 G++FSTYA WWIRQ++ RAI N RTIRLPIH+ ++++ + REL+H+L PS E Sbjct: 122 LGYKFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSEKISRIKKMTRELTHQLKRLPSRAE 181 Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDT-PLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 IAE L P+ DV +L + TS+D G D L D++ D K P D Sbjct: 182 IAEALKLPLQDVEMLLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQH 241 Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 + I WL L ++++VL RFGL E TL ++GR + ++RER+RQ++ L++LR + Sbjct: 242 EQISTWLAHLTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQKLR-V 300 Query: 317 LQTQGLNIEA 326 L Q L EA Sbjct: 301 LSQQPLCPEA 310 >UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria RepID=A9F3S6_SORC5 Length = 639 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 102/244 (41%), Positives = 165/244 (67%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 R R ++ ++E+NLRLVV IA++Y NRGL LDLI+EGN+GL++AV+KF+ +RG Sbjct: 391 IREGERMAERAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRG 450 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 ++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N +RT+R L + EP+ EEIA Sbjct: 451 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEYGREPTPEEIA 510 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 E+++ P+D V ++L++ + S++TP+G + + L D + D+ P + + ++ + Sbjct: 511 EKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVISPAEAVINMNLAEQT 570 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 K L L ++ +VL RFG+ TLE+VG++ +TRER+RQI+ + LR+LR ++ Sbjct: 571 RKVLKTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRS 630 Query: 320 QGLN 323 + L Sbjct: 631 KQLK 634 Score = 41.6 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%) Query: 12 NEDAEFDENGVEVFDEKALVEQEPSDND----LAEEELLSQGATQRVLDATQLYLGEIGY 67 +ED E + +V + E + + E + D ++YL ++G Sbjct: 102 DEDIEIVDGATQVKIAPKRIADEEAGEKKLVVTPDREEEDVDYYSKSNDPVRMYLRKMGS 161 Query: 68 SPLLTAEEEVYFARRALRGDVA 89 LLT E EV A+R G+ Sbjct: 162 VSLLTREGEVEIAKRIEIGEQK 183 >UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma RepID=B1AIY8_UREP2 Length = 448 Score = 313 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 111/294 (37%), Positives = 176/294 (59%), Gaps = 18/294 (6%) Query: 47 SQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVAS----RRRMIESNLRLV 102 S T++V D + YLG +G S +L ++EE +A+ + D + + ++ SN+RLV Sbjct: 146 SSTTTEKVDDGIKAYLGVLGESKMLRSDEETEYAKMVISDDPSLVKIGKNQLYTSNMRLV 205 Query: 103 VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQT 162 IA++Y NRGL L DLI+EG+ GL++A++KFD E+G +FSTYATWWIRQ+I RAI +Q Sbjct: 206 TSIAKKYLNRGLDLEDLIQEGSSGLLKAIDKFDHEKGHKFSTYATWWIRQSITRAIADQA 265 Query: 163 RTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD------------KPVDDVS 210 R IR+P+H+V+ +N + R L +L +P+AEEIA+ ++ V Sbjct: 266 RQIRIPVHMVETINKLTKAERNLIQELGRDPTAEEIAQAMNKVSQAKNQKEQLITAQKVV 325 Query: 211 RMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE-LNAK 269 + +LN S+D +G D E D ++D++ PE T+ + I + + LN Sbjct: 326 EIKKLNVDPVSLDKQIGHDEESQFSDFISDDEIISPEKYTEKKALNDQINEMFEKVLNDN 385 Query: 270 QREVLARRFGLLGYE-AATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++ V+ R+GLL +E TLE+VG +G+TRER RQI+ + +R+L+ +T L Sbjct: 386 EQRVIKMRYGLLPFERPYTLEEVGEYLGVTRERARQIESKAIRKLKHPSKTAKL 439 >UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema RepID=Q73P62_TREDE Length = 286 Score = 313 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 164/281 (58%), Gaps = 1/281 (0%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 ++ +++ YL EI PLLTAEEE+ +A+ A +GD ++ ++ SNLR VV + Sbjct: 4 RTKNNYDAEMNSLATYLKEINQIPLLTAEEEIKYAKLAEKGDEDAKNMLVNSNLRFVVNV 63 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A++Y N+GL L+DLI EGN+GL+ A E+FD +G++F +YA WWI+Q+I +AI ++R I Sbjct: 64 AKKYQNQGLPLMDLISEGNIGLMNAAERFDVSKGYKFISYAVWWIKQSILKAICEKSRMI 123 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 RLP++ EL + +E+ + EIA L+ V ++ S+D P Sbjct: 124 RLPLNRANELVQIEKAKKEIDFSGNETKELNEIAGILNMDNSMVHTIMNAAREPISIDAP 183 Query: 226 LGGD-SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYE 284 + + ++ D L DE PED D ++ + + L L+ ++ E++ RFGL GY Sbjct: 184 VFDEPGSSSVNDFLQDETHQMPEDYAMDMSLRDEVNELLKNLDDREAEIIRYRFGLGGYA 243 Query: 285 AATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 +L++VG LT+ER+RQI+ + L++L++ + Q L + Sbjct: 244 PLSLKEVGLIFNLTKERIRQIEKKALQQLKKPAEKQKLAVY 284 >UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteobacteria RepID=B3R1P5_CUPTR Length = 395 Score = 313 bits (802), Expect = 6e-84, Method: Composition-based stats. Identities = 147/301 (48%), Positives = 190/301 (63%), Gaps = 2/301 (0%) Query: 30 LVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA 89 E ++ + T+ D Q YL I PLL+A EE++F+ A GD A Sbjct: 95 GAENGTESAAAEHDDFRTVLHTELAADTVQHYLNRISIKPLLSAPEELHFSTLAKDGDFA 154 Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +R+ MIE NLRLVV IA+ Y NRG+ LLDLIEEGNLGL+ A+EKFDP RGFRFSTYATWW Sbjct: 155 ARQVMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPSRGFRFSTYATWW 214 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSH--KLDHEPSAEEIAEQLDKPVD 207 IRQ+IERAIMNQ RT+RLP+H+++ELN LR R L + S E+IA L K D Sbjct: 215 IRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKGGTDGRDASLEDIAHLLGKTPD 274 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 +V +L LNE TS+DTP D +LLD L+DE P+ +++ + WL L+ Sbjct: 275 EVQDVLALNEHTTSLDTPFDLDPGSSLLDFLSDEHNAAPDQEVAHRELEGLMKLWLARLS 334 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEAL 327 K R V+ RRFGL E ATLE++ E+GLTRERVRQIQ E L +L+ +QG+ +A+ Sbjct: 335 EKHRYVVERRFGLNHIEPATLEELAEEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAV 394 Query: 328 F 328 Sbjct: 395 L 395 >UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C8_CYAPA Length = 427 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 181/349 (51%), Gaps = 51/349 (14%) Query: 21 GVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA 80 +E E++P + E G + D+ ++ E+G LL+AEEE+ + Sbjct: 71 RMEAAAPPETKEEKPKVSMPVERRGRRAGGSS---DSFNSFIKEVGSFELLSAEEEIELS 127 Query: 81 RRALR-----------------------------------------GDVASRRRMIESNL 99 R+ +R R+++SNL Sbjct: 128 RQIRDLVQLETVKKRLAARIGREPREDEWAMAAGTQPGPAFQSRILKGRRARARLVQSNL 187 Query: 100 RLVVKIARRYGNRG-LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAI 158 R VV IA++Y N+ + L DLI+EG++GL++A E+FD ++GF+F TYATWWIRQ I R++ Sbjct: 188 RWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAERFDLDKGFKFLTYATWWIRQAIFRSL 247 Query: 159 MNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER 218 +Q RTIRLP+H+ L + +T ++L+ +L P+ EE+A++L+ PV ++ + + Sbjct: 248 QDQGRTIRLPVHVHDSLYLIKKTRQQLASRLGRIPTPEELADELNIPVSRLAFITQAASL 307 Query: 219 ITSVDTPLGGDSEKA-----LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 S+++P+ ++ L D + E P++ + +++ + L L A++R++ Sbjct: 308 PISLESPISSETSSTKARNNLGDFIESEC-LQPDEQLERTMLREDLENVLATLKARERDI 366 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 + R+GL+ TL+++G +GLTRER+RQI+ +R+L+ + L Sbjct: 367 IRMRYGLVDGSPKTLDEIGEIVGLTRERIRQIEQSAMRKLKAPYRKAIL 415 >UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiella burnetii RepID=RPOS_COXBU Length = 352 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 159/282 (56%), Positives = 212/282 (75%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 + R D TQ+YL E+G+ PLL A+EE+ ARR +GD +R++MIE+NLRLVVKI Sbjct: 69 TKKRRETRSSDPTQIYLRELGFQPLLNAKEELKIARRVHKGDPKARKQMIEANLRLVVKI 128 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 AR Y NRGL LDLIEEGNLGL+ AVEKFDPERGFRFSTYATWWIRQTIERAIMNQ+RT+ Sbjct: 129 ARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQTIERAIMNQSRTV 188 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 RLPIH++KELNVYLRTA++L+ ++DHE + E++A +DKPV ++ R++ L TS+D P Sbjct: 189 RLPIHVIKELNVYLRTAKKLTQEVDHEATPEDVAHLIDKPVQEIRRIMDLAPSATSIDVP 248 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 + D +K+L+D LAD+ P Q+ D++ I +WL +L+ + REV+ RFGL E Sbjct: 249 ISEDGQKSLVDTLADDNNIDPARLIQNVDLQDHIERWLAQLDERHREVVILRFGLHENEK 308 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEAL 327 TLE VG+ +GLTRERVRQIQ++ L++LR IL+ +G+ E + Sbjct: 309 GTLEAVGKAVGLTRERVRQIQIDALQQLRHILEMEGVTGEEV 350 >UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrelia RepID=RPOD_BORBU Length = 631 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 112/313 (35%), Positives = 185/313 (59%), Gaps = 10/313 (3%) Query: 11 LNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPL 70 L D E +E+ L E D +E++ Q+ L+ ++Y E + Sbjct: 322 LGRDLTIAEKKIEIEKSLKLKE------DAIKEQITEAQLAQKELERIEMYY-EYPTDKI 374 Query: 71 LTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRA 130 ++ EE+ ++ ++ ++ ++I++NLRLVV IA++Y NRGL DL++EGN+GLI+A Sbjct: 375 ISMSEEIAKGKQMMQH---AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKA 431 Query: 131 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLD 190 VEKF+ +RGF+FSTYATWWIRQ I R+I +Q RTIR+P+H+++++N R R L L Sbjct: 432 VEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYLIQVLG 491 Query: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT 250 +P+ EE++++L + V + ++ S++TP+G + + L D + D+ P + T Sbjct: 492 KDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGEEEDSVLSDFIEDKAIKNPANHT 551 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310 ++ I L L +++EV+ RFGL + TLE+VG +TRER+RQI+ + L Sbjct: 552 SFVVLQDQIRAILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKAL 611 Query: 311 RRLREILQTQGLN 323 RRL+ +TQ L Sbjct: 612 RRLKNPKKTQKLK 624 Score = 46.2 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 9/110 (8%) Query: 11 LNEDAEFDENGVEV---FDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGY 67 L++ + DE +++ D+ + D+ + + D +LYL EIG Sbjct: 91 LDDGFQSDEEDIDIDVKLDDCDEEDISVKDDLGSGYIKGNVLKDSHSEDPIKLYLKEIGK 150 Query: 68 SPLLTAEEEVYFARRALRGDVASRRRM------IESNLRLVVKIARRYGN 111 LLT +EV A++ G+ + IE+ LV I R Sbjct: 151 EFLLTGNQEVELAKQMDSGESIIENILKNEGLVIENYYNLVNTIYSRMER 200 >UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0N062_9BACT Length = 286 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 107/280 (38%), Positives = 168/280 (60%), Gaps = 1/280 (0%) Query: 46 LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKI 105 +++ T R + YL EIG L+T EEEV A+R +GD + ++ ++NLR VV + Sbjct: 6 ITKSITNRESASLDKYLQEIGKEELITVEEEVELAQRIKKGDQEALEKLTKANLRFVVSV 65 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A++Y N+GL+L DLI EGNLGLI+A EKFD RGF+F +YA WWIRQ+I +A+ Q+R + Sbjct: 66 AKQYQNQGLSLPDLINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIV 125 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 RLP++ V LN + + + PS EE+A +L+ P + V+ LR+ R SVD P Sbjct: 126 RLPLNQVGSLNKINKAFARFEQEHERTPSPEELANELELPKEKVTDTLRVAGRHVSVDAP 185 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 + +LLD+L + + ++ + + + L L ++R+++ FG+ E Sbjct: 186 FADGEDNSLLDVLVNPDSPNADRGLINESLSTEVDRALETLTERERDIIKYFFGIGCSE- 244 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 TLE++G + LTRERVRQI+ + +RRLR +++ L Sbjct: 245 MTLEEIGEKFDLTRERVRQIKEKAIRRLRHSSRSKLLKSY 284 >UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=Q9KHE4_ANASP Length = 390 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 127/356 (35%), Positives = 186/356 (52%), Gaps = 45/356 (12%) Query: 13 EDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGAT----QRVLDATQLYLGEIGYS 68 E+ D + + +E + E S+ + +E+ + + DA + E+ Sbjct: 31 EEHSLDTLELIIEEEPPITENLDSEERDSGDEMAAARPSGYNKTEHDDAVGAFFKEMARY 90 Query: 69 PLLTAEEEVYFARRAL----------------------------------------RGDV 88 PLL +EEV ARR Sbjct: 91 PLLKPDEEVELARRVRFLEEVRDLQADLQLQIGQHPTKAQVAGQLEITEKQLENRLYQGR 150 Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 ++R+MI SNLRLVV IA+RY NRG+ LDLI+EG +GL RA EKFDP++G++FSTYA W Sbjct: 151 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYW 210 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ I RAI N RTIRLPIHIV++LN + REL K PS E+AE L+ V Sbjct: 211 WIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEMAEALEISVPQ 270 Query: 209 VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL-FELN 267 + ++ +L + S++ +G + + L+D+L DE PE ++ M+Q I + L L Sbjct: 271 LRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVLGDVLT 330 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 ++++V++ R+GL E TLE+VG L+RERVRQIQ + +R+LR + L Sbjct: 331 PREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLK 386 >UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AV06_RUBXD Length = 304 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 117/292 (40%), Positives = 174/292 (59%), Gaps = 1/292 (0%) Query: 29 ALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDV 88 + + A E + YL IG LLT + E+ +RRA +GD Sbjct: 6 EVERSAVRSREGAPAEACCSDPEPETPELLAGYLDRIGRWRLLTRDGEIELSRRAKKGDR 65 Query: 89 ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 148 +R+++IE NLRLVV +A++Y GL DLI+EGN+GL++AVEKFDPERGFRFSTYATW Sbjct: 66 KARQKLIEKNLRLVVSVAKKYRGYGLPFEDLIQEGNIGLMKAVEKFDPERGFRFSTYATW 125 Query: 149 WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDD 208 WIRQ ++RA+ ++ RTIR+P+H+ +++ RT ELS +L+ EP+ EEIA +L+ V+D Sbjct: 126 WIRQAVQRAVADKGRTIRVPVHMTEKIRKVSRTFNELSLELEREPTDEEIARRLEWDVED 185 Query: 209 VSRMLRLNERITSVDTPLGGDSE-KALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V + TS+D P+ + L D + DE+ + DT + + + + L Sbjct: 186 VRLTISAMPDATSLDQPVSSEESASELGDFIEDERTSDTPDTVLKELESSQLKEAIERLP 245 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 + R VL RR+GL E ATL ++G E+ ++RERVRQ+Q E R L+ ++ Sbjct: 246 ERARYVLVRRYGLDDREPATLAELGDELKISRERVRQLQREAERLLKAGIRR 297 >UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2K4_9PROT Length = 282 Score = 309 bits (793), Expect = 7e-83, Method: Composition-based stats. Identities = 128/281 (45%), Positives = 177/281 (62%), Gaps = 1/281 (0%) Query: 49 GATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARR 108 + L+ +Y+ EI LLTA EE+ A+R GD + M+++NLRLVVKI+RR Sbjct: 2 SSNSGGLEPMAIYMREISRYELLTAAEEIALAKRIGAGDKEAHHYMVQANLRLVVKISRR 61 Query: 109 YGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP 168 Y NRG+AL DLIEEGNLGLIRAVEKFD G RFSTYATWWIRQ +ERAIMNQ+RTIR+P Sbjct: 62 YMNRGVALADLIEEGNLGLIRAVEKFDVTHGCRFSTYATWWIRQAVERAIMNQSRTIRVP 121 Query: 169 IHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG 228 +H+ KEL + L +L+ +P+ EIAE + V + ++ R S D L Sbjct: 122 VHVGKELYALTKHTNRLRSELERDPTDVEIAEAMGVSVQRIQELMGAAVRTDSADDMLHD 181 Query: 229 DSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLG-YEAAT 287 DS+ L D+ ADE P D Q + + W+ +L K+REV+ R+GL + T Sbjct: 182 DSDFTLYDVTADEAAESPGDQMQTVLRNEILQVWMSKLEKKEREVVRLRYGLDDAGDPWT 241 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALF 328 LE +G ++G+TRER+RQIQV+ L++LR I+ + ++ E + Sbjct: 242 LEMIGEQLGVTRERIRQIQVQALQKLRRIVSQENIDFEEIL 282 >UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WS32_CYAA5 Length = 416 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 110/328 (33%), Positives = 181/328 (55%), Gaps = 12/328 (3%) Query: 7 KVHDLNEDAEFDENGVEVFDEKALVEQ-EPSDNDLAEEELLSQGATQRVLDA----TQLY 61 K+ DL + E E D++ EQ E + + + + D Sbjct: 86 KIADLLQLERIREALWEELDQEPTDEQWGKRIFQWENIEQMLRAQSAKDKDPKWSEVTTM 145 Query: 62 LGEIGYSPLLTAE---EEVYFARRALRG---DVASRRRMIESNLRLVVKIARRYGNRGLA 115 L + L E + + R ++ +M+ SNLRLVV IA++Y NRGL+ Sbjct: 146 LQQADIISDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLS 205 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 DLI+EG+LGLIRA EKFD E+G++FSTYATWWIRQ I RAI +Q+RTIRLP+H+ + + Sbjct: 206 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI 265 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 + +T + LS ++ +P+ EEIA +++ ++ + + + + S++TP+G + + L Sbjct: 266 SRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG 325 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D + + PED + +++ + L L+ ++R+VL R+GL TLE++G+ Sbjct: 326 DFIEADG-ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIF 384 Query: 296 GLTRERVRQIQVEGLRRLREILQTQGLN 323 +TRER+RQI+ + LR+LR + L Sbjct: 385 NVTRERIRQIEAKALRKLRHPNRNSILK 412 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 2/84 (2%) Query: 16 EFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEE 75 DE+ ++ A E + + A D+ ++YL EIG LL AEE Sbjct: 20 FVDEDIESSGNDIAETETKKTRKISASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEE 79 Query: 76 EVYFARRALR--GDVASRRRMIES 97 E+ AR+ R + E Sbjct: 80 EIELARKIADLLQLERIREALWEE 103 >UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacteria RepID=RPOD_TREPA Length = 611 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 111/265 (41%), Positives = 166/265 (62%), Gaps = 3/265 (1%) Query: 62 LGEIGYSPLLTAEEEVYFARRALRGD---VASRRRMIESNLRLVVKIARRYGNRGLALLD 118 L I Y T + + AR RG ++ ++I +NLRLVV IA++Y NRGL D Sbjct: 342 LRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFD 401 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 L++EGN+GLI+AVEKF+ +G++FSTYATWWIRQ I R+I +Q RTIR+P+H+++++N Sbjct: 402 LVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKV 461 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 R +R+L K EPS EEIA+QL V+ V ++ + S++TP+G + + +L D + Sbjct: 462 TRESRQLLQKFGREPSDEEIAQQLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGDFV 521 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D P T+ +K+ + L L A++ EVL RFGL G + TLE+VG +T Sbjct: 522 PDADVENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVT 581 Query: 299 RERVRQIQVEGLRRLREILQTQGLN 323 RER+RQI+ + L+RLR ++ L Sbjct: 582 RERIRQIEAKALKRLRHPRHSRRLK 606 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 28 KALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGD 87 + + ++ + A + LLS + D +LYL +IG LLTAE+EV ++R G+ Sbjct: 90 ERVRDKLCDSSRGARQNLLSNARNIALDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGE 149 Query: 88 VASRRRMIESNLRL--VVKIARRYGNRGLALLD 118 + + +S L L I R + LA+LD Sbjct: 150 GIIKDIITQSGLLLPEFYHIGRSLSKKALAVLD 182 >UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteria RepID=Q02AX1_SOLUE Length = 518 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 181/308 (58%), Gaps = 3/308 (0%) Query: 20 NGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLG--EIGYSPLLTA-EEE 76 E+A+ E D+++ E+ S Q L + + EI L + Sbjct: 206 KEFAREIERAVDEISHLDSEIKRLEVRSNPTQQLRLRELKREIKKREIAAGATLPELKHS 265 Query: 77 VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 + R +++ ++E+NLRLVV +A++Y NRGL LLDLI+EGN+GL+RA +KF+ Sbjct: 266 LTVIRHGEAEAERAKKDLVEANLRLVVSVAKKYVNRGLHLLDLIQEGNIGLMRAADKFEY 325 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 RG++FSTYATWWIRQ I RAI +Q+RTIR+P+H+ + +N +LR REL +L P+ + Sbjct: 326 RRGYKFSTYATWWIRQAITRAIADQSRTIRIPVHMNESMNKFLRATRELEKELGRTPTND 385 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 EI ++D PV+ V ++ ++ S++TP+G D E AL D++ D P D + +++ Sbjct: 386 EIGRRMDIPVEKVQKLKTISRDPVSLETPVGRDGESALGDLIEDRWVGSPVDAVIESNVR 445 Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 L L+ K+ +V+ RFG+ TLE++G+E +TRER+RQI+ + LR+LR Sbjct: 446 DETAGILKTLSPKEEKVIRMRFGIGCEREHTLEEIGQEFDVTRERIRQIEAKALRQLRAP 505 Query: 317 LQTQGLNI 324 + + L Sbjct: 506 ERARRLRA 513 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 5/113 (4%) Query: 10 DLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQR---VLDATQLYLGEIG 66 D ED EN + + E + L + D ++YL E+G Sbjct: 11 DQFEDQFLAENPEALGLSFEDDPKFFDPEAAHEADFLHPAPVEESIYTDDPVRVYLREMG 70 Query: 67 YSPLLTAEEEVYFARRALRGDVASRRRMIESNL--RLVVKIARRYGNRGLALL 117 PLLT E EV ARR RG + ++ + S L R+VV +A + + + Sbjct: 71 AVPLLTREGEVDLARRMERGKLRMQKAISRSALVQRVVVDVADQLKRANIEIE 123 >UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella RepID=B0U099_FRAP2 Length = 578 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 163/281 (58%), Gaps = 8/281 (2%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYF------ARRALRGDVASRRRMIESNLRLVVK 104 T + +I L + ++ +++ MIE+NLRLVV Sbjct: 295 TDNTVKEIHNLTKQINQFQNLMMMKIEELKKVNVEISKSEAKITQAKKEMIEANLRLVVS 354 Query: 105 IARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRT 164 A++Y NRGL LD+I+EGN+GL++AV+KFD +GF+FSTYATWWIRQ I R+I +Q RT Sbjct: 355 EAKKYTNRGLHFLDIIQEGNIGLMKAVDKFDYRKGFKFSTYATWWIRQAITRSIADQART 414 Query: 165 IRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL-DKPVDDVSRMLRLNERITSVD 223 IR+P+H+++ +N R R++ + E + EEI E + D + ++L ++ S++ Sbjct: 415 IRVPVHMIETINKVNRIKRQILQEKGREATEEEIIEYTPNMTKDKLKKILNISHTPISME 474 Query: 224 TPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFE-LNAKQREVLARRFGLLG 282 +P+G D + + D + D+ P + ++++++I + + L ++ +VL RFG+ Sbjct: 475 SPIGDDEDSTVGDFIEDKNNYSPIEAANLENLREAIKELIDTGLTEREAKVLMMRFGIGM 534 Query: 283 YEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 TLE+VG++ +TRER+RQI+ + LR+L+ ++ L Sbjct: 535 NTDHTLEEVGKQFNVTRERIRQIEAKALRKLKHPSRSAFLK 575 Score = 41.6 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 +S++ K ++ +A + G++V+D ++++ + ++E L + D ++ Sbjct: 36 VSEDPKKYEEI--EAILIDAGIDVYDRTPELDEDDDERKVSEANL--DDLKGKTSDPIRM 91 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVA 89 Y+ E+G LL + E A R G Sbjct: 92 YMREMGIVDLLDKKGETDIAIRIEEGTTE 120 >UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacteria RepID=B2J5S6_NOSP7 Length = 378 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 127/357 (35%), Positives = 186/357 (52%), Gaps = 45/357 (12%) Query: 12 NEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGAT----QRVLDATQLYLGEIGY 67 E+ D +E +V + ++ +++ + + DA + E+ Sbjct: 18 IEEPSLDSLDAVADEEPPIVVENLESDERDGDDMAAARPSGYNKTEHDDAVGAFFKEMAR 77 Query: 68 SPLLTAEEEVYFARRAL----------------------------------------RGD 87 PLL A+EEV ARR Sbjct: 78 YPLLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQLESRLYQG 137 Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 ++R+MI SNLRLVV IA+RY NRG+ LDLI+EG +GL RA EKFDP++G++FSTYA Sbjct: 138 RVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAY 197 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I RAI N RTIRLPIHIV++LN + REL KL P+ E+AE LD V Sbjct: 198 WWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPTEGEMAEALDISVQ 257 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL-FEL 266 + ++ +L + S++ +G + + L+D+L DE PE ++ M+Q I + L L Sbjct: 258 QLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVLGDVL 317 Query: 267 NAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 ++++V++ R+GL E TLE+VG L+RERVRQIQ + +R+LR + L Sbjct: 318 TPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRLK 374 >UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2H8_LISDA Length = 294 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 142/292 (48%), Positives = 201/292 (68%), Gaps = 2/292 (0%) Query: 41 AEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR 100 + + T D QLYL +I PLLT +EE+ ++R+AL GD S++ MIESNLR Sbjct: 1 MDIKNKVDDTTSFDNDVIQLYLKDIALKPLLTKDEEILYSRKALVGDAKSKKVMIESNLR 60 Query: 101 LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 LVV IA++Y G+ L D+I+EGN+GLI AVEKFDPERGFRFSTYATWWI+QTIERAI N Sbjct: 61 LVVSIAKKYRGSGMQLSDMIDEGNIGLITAVEKFDPERGFRFSTYATWWIKQTIERAIHN 120 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERIT 220 Q RTIRLP+H+ KE+N LRT ++L + EP+ EE+A++LDK V+D+S +L + + Sbjct: 121 QARTIRLPVHVSKEINTILRTHKQLMKTNNSEPTHEEVADELDKSVEDISALLSYDAPVM 180 Query: 221 SVDTPLGGDS--EKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRF 278 S D + + + + ++D+ +NGP+ +D+++ + L LN + RE+L RRF Sbjct: 181 SFDQTISSEDSNSQTMASFISDDSDNGPDAQIDKNDIQKLTLTMLEGLNPRDREILCRRF 240 Query: 279 GLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 GL+GYEA TL+ V E+GLTRER+RQ+QV L +L+ +LQ + ++E LF E Sbjct: 241 GLMGYEAQTLQQVAEEVGLTRERIRQLQVSSLNKLKNVLQREKYDLELLFAE 292 >UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=A6G972_9DELT Length = 547 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 105/264 (39%), Positives = 172/264 (65%), Gaps = 3/264 (1%) Query: 62 LGEIGYSPLLTAEEEVYFAR---RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 + ++ ++A+ V +A R A++ ++E+NLRLVV IA++Y NRGL LD Sbjct: 278 IRQVEQETGVSADNLVALYDSLTKARREREAAKAELVEANLRLVVSIAKKYTNRGLQFLD 337 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI+EGN+GL++AV+KF+ +RG++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N Sbjct: 338 LIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAISDQARTIRVPVHMIESINKL 397 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 +RT R+L + EP+ +EIAE+++ PV+ V +LR+ + S++TPLG D + +L D++ Sbjct: 398 IRTTRQLVQEFGREPTHQEIAEKMNMPVEKVRSILRIAKEPISLETPLGEDGDSSLGDLI 457 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D+ P + + + L L ++ ++L RFG+ TLE+VGR+ +T Sbjct: 458 EDKNALDPGSGVVERHLGDETRRALASLTPREEKILRLRFGIGEASDHTLEEVGRDFSVT 517 Query: 299 RERVRQIQVEGLRRLREILQTQGL 322 RER+RQI+ + L +LR+ + + L Sbjct: 518 RERIRQIEAKALSKLRKADRAKQL 541 >UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13K37_BURXL Length = 628 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 95/257 (36%), Positives = 156/257 (60%), Gaps = 3/257 (1%) Query: 62 LGEIGYSPLLTAEEEVYFARRALRGDVA---SRRRMIESNLRLVVKIARRYGNRGLALLD 118 L +I L+ +E + +R+ D +RR MIE+NLRLVV +A++Y G+ LLD Sbjct: 359 LAQIEAREGLSLQELKWISRKMNVADRELQDARRAMIEANLRLVVSVAKKYVQSGMPLLD 418 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 L++EGN+GL++AV++F+ RGF+FSTYATWWIRQ++ RAI + RTIR+P+H+ ++ Sbjct: 419 LVQEGNIGLMKAVDRFEYRRGFKFSTYATWWIRQSVSRAIADYGRTIRVPVHMADAMHRV 478 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 R A E+ + + E+A +L + V + R+ + S+D P+G +++ L +++ Sbjct: 479 KRVAGEMRQETGRPARSSELAARLGMSEEKVRSVQRVTRQPVSLDVPIGEEADTTLGEMV 538 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D P D D++ +I L L ++ +V+ RFG+ TLE++G + +T Sbjct: 539 EDSSTLAPLDALLQADLRVAIDAALGVLTPREAKVIKLRFGVDAVSEHTLEELGDQFDVT 598 Query: 299 RERVRQIQVEGLRRLRE 315 RERVRQIQ + L++LR Sbjct: 599 RERVRQIQNKALQKLRH 615 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 33 QEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRR 92 + ++++ A ++ D + YL E+G +PLLT E E+ ARR Sbjct: 86 DDVAEDETATALTIAISEPGPAADPMRAYLREMGATPLLTREGEIAVARRIEACLREMLE 145 Query: 93 RMIE--SNLRLVVKIARRYGNRGLALLDLI 120 + + + ++ A R L + DL+ Sbjct: 146 VIALRPATVDAILSRADRVAAGELDIDDLV 175 >UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDN0_THET1 Length = 344 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 131/341 (38%), Positives = 184/341 (53%), Gaps = 28/341 (8%) Query: 8 VHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGY 67 + +L +D + +N E+ + L + E + + E + + + D+ +YL EIG Sbjct: 1 MEELGKDFDILDNLDEIILDSELEDLEADLSPASLLE--EEMDRELIGDSLGIYLREIGR 58 Query: 68 SPLLTAEEEVYFARRALRG--------------------------DVASRRRMIESNLRL 101 + LLTAEEEV A+ RG A+R ++IE NLRL Sbjct: 59 AQLLTAEEEVALAQAIERGQEAEQRLQSDDISPEELDDLKKAVEEGKAARHKLIEHNLRL 118 Query: 102 VVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQ 161 VV IARRY G+ L DLIEEGNLGL+RA EKFD RGFRFSTYATWWIRQ + R + Sbjct: 119 VVSIARRYVGHGMPLADLIEEGNLGLMRAAEKFDWRRGFRFSTYATWWIRQAVTRGLAEG 178 Query: 162 TRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITS 221 RTIRLP+H+ + L R + LS +L EP+ +E+AE + + + S Sbjct: 179 GRTIRLPVHVGEALTKIGRETQRLSLELGREPTNQELAEATGLSPERIDEYKNASRLPLS 238 Query: 222 VDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL 281 ++ PLG D E L ++L D + PE + + I + L LN +QR ++ R+GL Sbjct: 239 LEAPLGEDGETNLGEVLEDTEAANPEHIADHTMLGEDIKRALERLNERQRAIIIMRYGLY 298 Query: 282 GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 G + TLE GR++G+TRER RQI+ E L RLR+ Q L Sbjct: 299 GGQPMTLEAAGRKLGVTRERARQIEQEALNRLRQSDAKQFL 339 >UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B6H5_METEA Length = 531 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 93/236 (39%), Positives = 149/236 (63%), Gaps = 1/236 (0%) Query: 82 RALRGD-VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 RA GD +R ++ SNLRLV +A++Y NR L +LDL++EGN+GL+RA+EKFD RG+ Sbjct: 282 RAAHGDLRKARDTLVTSNLRLVFSVAKKYTNRPLPILDLVQEGNIGLMRAIEKFDYRRGW 341 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYA WWI+Q+I R+I + RTIRLP+H+ ++ RTA L +L PS E+A+ Sbjct: 342 KFSTYAIWWIKQSISRSIADHGRTIRLPVHLHEKAAKIDRTAARLRAELGRPPSPPELAQ 401 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 LD V V R++ ++ S+D P+G D + D++ DEK P +K ++ Sbjct: 402 ALDIDVRQVERLMNMSRETVSLDLPVGEDGDVRFGDLVEDEKAPDPVGLADLAKLKDAVS 461 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 + +L +++ ++ RFG+ + TLE++G+ ++RERVRQ++ + ++RLR Sbjct: 462 DAVGDLPEREQTIIRMRFGIGYADQMTLEEIGQHFRISRERVRQVESKAIQRLRSP 517 >UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria RepID=Q601Y8_MYCH2 Length = 676 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 110/332 (33%), Positives = 180/332 (54%), Gaps = 24/332 (7%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLG 63 ++LK+ ++++ EN + + + E N L + D + Y+ Sbjct: 352 DSLKIQEIDDLDYITENSPNQYHKPKVYSDEVYLNKLTD-----------TSDMIKWYMR 400 Query: 64 EIGYS-PLLTAEEEVYFARRAL---RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDL 119 IG LLTAEEE A++ R +R +I+ NLRLVV A+RY NRGL +DL Sbjct: 401 WIGKYGKLLTAEEERELAKKMKIKGRIGKKARDTLIKRNLRLVVNSAKRYKNRGLGFIDL 460 Query: 120 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179 I EGNLG+I+AV K+D RGF+FSTYATWWIRQ I RA+ +Q R IR+P+H+V+ +N Sbjct: 461 ISEGNLGIIKAVAKYDYTRGFKFSTYATWWIRQAITRAVADQARLIRIPVHMVETINKIN 520 Query: 180 RTARELSHKLDHEPSAEEIAEQLD--KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 + REL + P+AEEI+E+L D + + ++N S+D +G + + + D Sbjct: 521 KVERELQQEKGLNPTAEEISERLGGEFSPDKIRYIKKINIDPISLDKAIGKEEDSSFSDF 580 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLF-ELNAKQREVLARRFGLLGYEA------ATLED 290 + DE P D ++ + +++ + L+ +R+ + RR+G+ + + E+ Sbjct: 581 IKDENMISPVDYAIREEKAKVLLEMIDSTLDYDERDFIKRRYGVGTNDEGIPYQAHSFEE 640 Query: 291 VGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 + +T+ERVRQI+ + L++LR + L Sbjct: 641 LAAMRRVTKERVRQIEAKILKKLRTPHRRLSL 672 >UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter michiganensis RepID=B0RI86_CLAMS Length = 347 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 124/320 (38%), Positives = 178/320 (55%), Gaps = 33/320 (10%) Query: 27 EKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG 86 E A +D+DL E L++ GA+ DA + YL +IG PLLTAE EV ARR G Sbjct: 23 ESARPVDPYADSDLPEPSLVTPGAST---DAVKDYLRQIGRVPLLTAELEVSVARRIEVG 79 Query: 87 ---------------------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDL 119 + +++ ++ +NLRLVV IA+RY RGL LDL Sbjct: 80 VLSQEVLDTRTDLTPAERREYQTLAQDGMRAKQHLVNANLRLVVSIAKRYTGRGLPFLDL 139 Query: 120 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179 I+EGN+GL+RAVEKFD + GF+FSTYA+WWI+Q+I R + + +RTIR+P+H V+ +N Sbjct: 140 IQEGNMGLVRAVEKFDYQAGFKFSTYASWWIKQSITRGMADTSRTIRIPVHTVEHINRIN 199 Query: 180 RTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL---GGDSEKALLD 236 REL +L +PS EEIA + D PV V +L + S+ + GGD + + D Sbjct: 200 AVQRELGDELGRDPSMEEIARESDTPVTKVRYLLDRAQEPMSLQVLVGGSGGDGDTEMAD 259 Query: 237 ILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIG 296 ++ D P D M + + + L + EV+ RFGL G E +L V +++G Sbjct: 260 LIEDADVTQPIDVVTQQLMAAHVTRLIDGLAERDAEVVRMRFGLAGLEPRSLAFVSQQLG 319 Query: 297 LTRERVRQIQVEGLRRLREI 316 +TRERVRQI+ + L +LR Sbjct: 320 VTRERVRQIEKKVLAKLRIP 339 >UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2H3_ACIFD Length = 337 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 116/315 (36%), Positives = 162/315 (51%), Gaps = 26/315 (8%) Query: 31 VEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG---- 86 V ++ E + + + D +LYLG+IG LLT ++E RR R Sbjct: 14 VHPASQESSGGGELVTKERQEREDEDLVRLYLGDIGSHELLTKDDEAELGRRMDRARDAQ 73 Query: 87 ----------------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGN 124 ++R I++NLRLVV IA+RY GL LLDLI+EGN Sbjct: 74 RQLDAGVKEPARRAELEELVRQGEEAKRAFIQANLRLVVSIAKRYQASGLPLLDLIQEGN 133 Query: 125 LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARE 184 +GLI AVEKFD +GF+FSTYATWWIRQ I R I N RTIRLP+H L+ R + Sbjct: 134 MGLIHAVEKFDWRKGFKFSTYATWWIRQAITRGIANTGRTIRLPVHAGDSLSRVQRAQVQ 193 Query: 185 LSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKEN 244 L +L P+ E+A ++D P D + LR S+ PL D + L D++ D + Sbjct: 194 LEVRLGRAPTVRELAAEVDLPYDKLVEALRFRAEPVSLSEPLRDDGDAELGDVVEDSQSA 253 Query: 245 GPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQ 304 P D + + + + L L+ ++RE+L R+GL E TLE+VG LTRER+RQ Sbjct: 254 TPFDVAAEHLLPSEVSRLLAPLDGREREILRLRYGLDRGEPRTLEEVGEYFHLTRERIRQ 313 Query: 305 IQVEGLRRLREILQT 319 I+ + +LR Sbjct: 314 IEARAMSKLRHPSAD 328 >UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC14_9BACT Length = 479 Score = 307 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 104/264 (39%), Positives = 158/264 (59%), Gaps = 3/264 (1%) Query: 62 LGEIGYSPLLTAEE---EVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 + + L E E+ +R R + +R M+E NLRLVV IAR Y NRG LD Sbjct: 211 MRNLQAEMWLNPSELNVELQEMKRWQRKALEARTEMVECNLRLVVSIAREYQNRGQPFLD 270 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI+EGN+GL+RAVE+F+ RG++F+T ATWWIRQ I R+I NQ RTIR+P H++ L Sbjct: 271 LIQEGNIGLMRAVERFEYRRGYKFATCATWWIRQAISRSIANQARTIRIPTHMIDLLAKL 330 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 +R R+++ + +P+AE++A +L P+ V +L++ E S+ TP+G + L D + Sbjct: 331 IRVQRQMTQESGRDPTAEDLAGELHLPLRRVRALLKMAEEPISIHTPVGEEGGSRLGDFI 390 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D P +++ I L L ++RE+L +RFGL+ TLE++GR +T Sbjct: 391 EDHSVEDPSKQAAVAMLREKINAVLHTLTEREREILEQRFGLIDGRERTLEEIGRHFKVT 450 Query: 299 RERVRQIQVEGLRRLREILQTQGL 322 RERVRQI+ + LR++R + + L Sbjct: 451 RERVRQIEAKALRKMRHPERRRQL 474 >UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Planctomycetaceae RepID=D2R2I8_9PLAN Length = 545 Score = 307 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 107/267 (40%), Positives = 164/267 (61%), Gaps = 6/267 (2%) Query: 63 GEIGYSPLLTAEEEVYFARRALRGDV------ASRRRMIESNLRLVVKIARRYGNRGLAL 116 E+ + +T E RR +R + A++R + NLRLVV IA++Y NRGL+ Sbjct: 259 KELVHLMRITLETPATLKRRIVRTNEYRENYDAAKRVLSAGNLRLVVSIAKKYRNRGLSF 318 Query: 117 LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELN 176 LDLI+EGN GL+RAV+KF+ RG++FSTYATWWIRQ I RAI +Q+RTIR+P+H++ ++ Sbjct: 319 LDLIQEGNTGLMRAVDKFEYARGYKFSTYATWWIRQAITRAIADQSRTIRVPVHMIDTMS 378 Query: 177 VYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLD 236 R+L +L EP+ EE+A +DD +L++ + S+D P+G + + Sbjct: 379 KVRAVTRQLVQELGREPTPEEVARVAGLTLDDARCVLKMARQPLSLDQPVGDHDDSYFGE 438 Query: 237 ILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIG 296 LAD +E P T +K I + + LN ++RE+L R+GL A TLE+VG+ Sbjct: 439 FLADHREEDPLYDTHQQALKHQIEEAMQGLNYREREILRLRYGLTDGYAYTLEEVGKIFS 498 Query: 297 LTRERVRQIQVEGLRRLREILQTQGLN 323 +TRERVRQI+ + +R+L++ + + L Sbjct: 499 VTRERVRQIETKAVRKLQQPYRNRSLT 525 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 2 SQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLY 61 S++ + HD E F E VE+ + + VE D E + D ++Y Sbjct: 30 SEDRIGTHDEFELDAFAEVDVEIDEIEVDVEVASEHGDELE-------SVDATDDPVRMY 82 Query: 62 LGEIGYSPLLTAEEEVYFARRALRGDVASRRRM 94 L ++G PLL +E+ AR + R M Sbjct: 83 LMQMGQIPLLNRTQEIDSARTIEATRLKFRHSM 115 >UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus RepID=B8G577_CHLAD Length = 314 Score = 306 bits (785), Expect = 7e-82, Method: Composition-based stats. Identities = 118/298 (39%), Positives = 167/298 (56%), Gaps = 27/298 (9%) Query: 47 SQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG-------------------- 86 + D LYL EIG PLLT E+E A+ +G Sbjct: 4 PTTIGRSASDTIVLYLNEIGAEPLLTFEQEQQLAQTIAQGRRAAERLTNEPSLHSTEKKR 63 Query: 87 -------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 +R ++I SNLRLVV IARRY GL LLDLI+EG++GL+RAV+KFD RG Sbjct: 64 LAAQVAAGEQARAQLINSNLRLVVSIARRYQGHGLTLLDLIQEGSIGLMRAVDKFDAGRG 123 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 +FSTYAT+WIRQ+I RAI + +RT+RLP+H+ + L+ R +EL+ +LD EP+ EE+A Sbjct: 124 LKFSTYATYWIRQSIGRAIADHSRTVRLPVHLGERLSRLARLRQELAQQLDREPTLEELA 183 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 V+ V R + TS+D D AL +IL D + P D + ++ + Sbjct: 184 NAAGLSVEQVERAEQAGLAPTSLDEAHTEDGGGALSEILTDPLQPTPFDEVSEGMLQADV 243 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 L +L+ ++R +L R+GL G TLE +G+ + LTRERVRQ++ E LR+LR+ Sbjct: 244 QAALSQLSPRERNILRLRYGLDGEPMHTLEQIGQRLRLTRERVRQLEYEALRKLRDPS 301 >UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellular organisms RepID=RPOD_SYNY3 Length = 425 Score = 306 bits (785), Expect = 7e-82, Method: Composition-based stats. Identities = 113/328 (34%), Positives = 187/328 (57%), Gaps = 14/328 (4%) Query: 7 KVHDLNEDAEFDEN---GVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLG 63 ++ DL E +N +E + ++ + A++ L+ + YL Sbjct: 97 QIADLLELELIRDNLTLQLERQPSELEWGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLA 156 Query: 64 EIGYSPLLTAEEE--------VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 L+ E E RR L D ++ +M++SNLRLVV IA++Y NRGL+ Sbjct: 157 NPDNE--LSLENEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLS 214 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 DLI+EG+LGLIRA EKFD E+G++FSTYATWWIRQ I RAI +Q+RTIRLP+H+ + + Sbjct: 215 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI 274 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 + +T + LS ++ +P+ EEIAE+++ ++ + + + + S++TP+G + + L Sbjct: 275 SRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG 334 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D + + PED + +++ + L L+ ++R+VL R+GL TLE++G+ Sbjct: 335 DFIEADG-ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIF 393 Query: 296 GLTRERVRQIQVEGLRRLREILQTQGLN 323 +TRER+RQI+ + LR+LR + L Sbjct: 394 NVTRERIRQIEAKALRKLRHPNRNSILK 421 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Query: 27 EKALVEQEPSDNDLAEEELLSQGATQR---VLDATQLYLGEIGYSPLLTAEEEVYFARRA 83 E E ++ + + + A ++ D+ ++YL EIG LL AEEE+ AR+ Sbjct: 39 EDLEQEVAATEGKEKKVRKIRKDAVKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARQI 98 Query: 84 LRGDVASRRRMIESNLRL 101 +I NL L Sbjct: 99 ADLLEL---ELIRDNLTL 113 >UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia sp. CCGE1002 RepID=D1TN62_9BURK Length = 663 Score = 306 bits (784), Expect = 9e-82, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 176/299 (58%), Gaps = 3/299 (1%) Query: 27 EKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARR---A 83 + + S + E + + + A Q L +I L ++ R+ A Sbjct: 359 RETDLAWSESTAAASREYGAALERSLPAIQAEQRKLLDIETKVGLPLQQLKKINRQMMAA 418 Query: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143 + ++R MIE+NLRLV+ IA++Y NRG+ LDLI+EGN+GL++AV+KF+ RG++FS Sbjct: 419 ESKMLQAKREMIEANLRLVISIAKKYVNRGMHFLDLIQEGNIGLMKAVDKFEYRRGWKFS 478 Query: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD 203 TYATWW+RQ + R++ +Q RTIR+P+H+++ +N R +RE+ + E +A++++ Sbjct: 479 TYATWWVRQAVTRSLADQARTIRIPVHMMESINKLNRISREILQQTGREAHPAVLAQRME 538 Query: 204 KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL 263 P + V ML++ + S++TP+G +++ L D++ D P D +++ +I L Sbjct: 539 VPEEKVRAMLKIGRQPLSLETPVGDEADTTLSDVIEDPMATSPADAAVQANLRAAINTAL 598 Query: 264 FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 L+ ++ +VL RFG+ TLE++G++ LTRER+RQI+ + +R+L +T L Sbjct: 599 DALSPREAKVLRMRFGIDTASDCTLEELGKQFDLTRERIRQIESKAMRKLMHPNRTAKL 657 Score = 42.0 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 11 LNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPL 70 + E A E + A + + +D + R D ++Y+ E+G + L Sbjct: 96 VYEQAPSAEVLLMNDATPATMLDDQADEEAEVALSSVDSEFGRTTDPFRMYMREMGATGL 155 Query: 71 LTAEEEVYFARRALRGDVASRRRMIES 97 LT E+ A+R G M+++ Sbjct: 156 LTRAGEIEIAKRIEGG----LHEMVQA 178 >UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=B2IZW2_NOSP7 Length = 332 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 118/318 (37%), Positives = 167/318 (52%), Gaps = 41/318 (12%) Query: 38 NDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRAL------------- 84 + EE + D + YL EIG PLLT E+E+ FA++ Sbjct: 5 SHQYLEESNKKEKLLYTADTVRAYLREIGRIPLLTHEQEINFAKQVQKMMALLATKEKLA 64 Query: 85 ---------------------------RGDVASRRRMIESNLRLVVKIARRYGNRGLALL 117 ++++MI++NLRLVV IA++Y L L Sbjct: 65 IQLKRQPTQKEWIENINIGEKSLLQQLHQGQKAKQKMIQANLRLVVSIAKKYQRHNLDFL 124 Query: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177 DLI+EG+LGL R VEKFDP +G++FSTY WWIRQ I RAI Q RTIRLPIHI ++LN Sbjct: 125 DLIQEGSLGLERGVEKFDPTKGYKFSTYGYWWIRQAITRAIAEQGRTIRLPIHITEKLNK 184 Query: 178 YLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDI 237 R REL+ KL P+A +IAE+L + L L + S++ +G D + L D+ Sbjct: 185 IKRIQRELTQKLGRTPTAVDIAEELSLDPKQIRDYLLLARQPVSLELRVGSDKDIELQDM 244 Query: 238 LADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 L D PE ++Q+I L +LN +QR++L RFGL +L ++G+ +G+ Sbjct: 245 LED-NGLSPELYADHKFLQQNIQNLLSKLNPQQRQILTFRFGLTDGNELSLAEIGQRMGI 303 Query: 298 TRERVRQIQVEGLRRLRE 315 +RERVRQI+ + L LR Sbjct: 304 SRERVRQIEQQALGSLRR 321 >UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J802_MYCHP Length = 538 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 179/329 (54%), Gaps = 19/329 (5%) Query: 14 DAEFDENGVEVFDEKALVEQEPSDNDLAEEELLS-QGATQRVLDATQLYLGEIGYS-PLL 71 + D + + E + + S+ + +++ + D + Y+ IG LL Sbjct: 199 QSYDDFDANNLLKEYNDEDIKLSEEKVYDQDDIKLTNKLTETNDIVKWYMRWIGKYGKLL 258 Query: 72 TAEEEVYFARRALRGDV--------ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEG 123 T EE A++ +R +++ NLRLV+ A+RY NRGL +DLI EG Sbjct: 259 TTNEEQALAKKMQEAKEANNYYKYKKARDMLVKRNLRLVINNAKRYKNRGLNFIDLISEG 318 Query: 124 NLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAR 183 N G+++AV K+D +GF+FSTYATWWIRQ I RA+ +Q RT+R+P+H+V+ +N L+ R Sbjct: 319 NAGIMKAVSKYDYTKGFKFSTYATWWIRQAITRAVADQARTVRVPVHMVETINKILKIER 378 Query: 184 ELSHKLDHEPSAEEIAEQLD--KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADE 241 EL + + P+ EEIA++ + V + ++N S+D +G + + D + DE Sbjct: 379 ELQQENGYPPTDEEIAKKYGGDFTAEKVRYIRKINIDPISLDKNIGKEENSSFSDFVKDE 438 Query: 242 KENGPEDTTQDDDMKQSIVKWLFE-LNAK-QREVLARRFGLLG-----YEAATLEDVGRE 294 P +++ I + + E L+ + R+++ +RFG+ Y+ TL+++ +E Sbjct: 439 SVISPTSYASHEELSVIINEMIEEGLSDQADRDLIRKRFGINDLKGNKYKPHTLDELSKE 498 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGLN 323 +G+++E+VRQ++ + LR+L+ + + L Sbjct: 499 LGISKEKVRQLETKVLRKLKHPQKRRKLK 527 >UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9N7_SPHTD Length = 359 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 108/288 (37%), Positives = 160/288 (55%), Gaps = 22/288 (7%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG----------------------D 87 Q DA Y ++G LLT EE+ ++R G Sbjct: 62 IDQATSDAVYRYFRDVGGHQLLTHREEIEYSRAVRAGLEARKRLEAGEDSEELHQIIERA 121 Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 A+R ++I NLRLVV IA++Y GL L+DLI+EGN+GL+ AVE++DPE G+RFSTYAT Sbjct: 122 KAAREKLIRHNLRLVVSIAKKYRTSGLPLIDLIQEGNIGLMTAVERYDPELGYRFSTYAT 181 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 +WIRQ I RA+ NQ+RTIR+P+H+ ++ RT +L + +E+A+ LD V+ Sbjct: 182 FWIRQAIGRAVANQSRTIRVPVHMHDLISKVRRTEAQLEQLHGRPATDQELAQALDLDVE 241 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 + + R +S+D P+G D E + D+L D + D ++ I + L L+ Sbjct: 242 RIEQARSAIPRTSSLDKPIGEDGESTIGDLLPDPASDEVVDQAVTSAIRDQIRRSLESLS 301 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 ++R VL RFGL G + TL ++ G++RERVRQI+ E L +LR Sbjct: 302 ERERGVLTLRFGLGGQQPQTLAEIAEYYGISRERVRQIEKEALAKLRN 349 >UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=7 Tax=Planctomycetaceae RepID=D2R6R0_9PLAN Length = 544 Score = 303 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 96/236 (40%), Positives = 153/236 (64%) Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 A++R++ NLRLVV IA++Y NRGL+ LDLI+EGN GL+RAV+K++ RGF+FSTYAT Sbjct: 301 EAAKRQLSSGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGFKFSTYAT 360 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ I RAI +Q RTIR+P+H++ L+ ++L +L EP+ EE+ +D P++ Sbjct: 361 WWIRQAITRAIADQARTIRIPVHMIDVLSKLRNVQKKLLQELGREPTTEEVTALVDLPLE 420 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 +V R+L + S+D P+G + + + + D + P + +++ I L L Sbjct: 421 EVKRVLDIGRHPVSLDRPVGDSEDSSFGEFIEDTASDNPVLCATNGILRERIDGLLKTLT 480 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 ++RE++ R+GL TLE+VGR +TRERVRQI+ + +R+L+ ++++ L Sbjct: 481 WREREIIRLRYGLCDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLE 536 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 4/98 (4%) Query: 1 MSQNTLKVHDLNEDA-EFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQR---VLD 56 + + L+ + G+E+ D+ + +P E + + + D Sbjct: 30 LPDQDVNPEKLDNLLVALEHAGIELVDQPPVEPGKPRLFVPRESDAVPLKPEESKKLNSD 89 Query: 57 ATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRM 94 +LYL ++ PLL+ +EE+ A++ RR + Sbjct: 90 PIRLYLSQMAEIPLLSRQEEISLAKKIEVTRKRFRRTI 127 >UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3J9H0_NITOC Length = 579 Score = 303 bits (776), Expect = 8e-81, Method: Composition-based stats. Identities = 101/277 (36%), Positives = 168/277 (60%), Gaps = 3/277 (1%) Query: 49 GATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALR---GDVASRRRMIESNLRLVVKI 105 + L A Q L ++ L +E +R +R ++ +M+E+NLRLVV + Sbjct: 297 QTQAKTLRAAQAVLLQVEVEAGLPLDELKAIHQRLVRSQFQAQRAKAQMVEANLRLVVSV 356 Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165 A++Y NRGL LDLI+EGN+GL++AV+KFD RG++FSTYA WWIRQ I RAI +Q+RTI Sbjct: 357 AKKYRNRGLTFLDLIQEGNIGLMKAVDKFDYHRGYKFSTYAHWWIRQAITRAIDDQSRTI 416 Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225 R+P+H++++L+ R + +L + E EE+AE+L + RM + ++ S++TP Sbjct: 417 RIPVHVMEKLSKLNRASYQLRQEKGREGRPEELAERLALSEQQIHRMHEIAKQPISLETP 476 Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285 LG D + L +++ DE+ P + ++ + L L+ ++ +V+A RFG+ Sbjct: 477 LGKDEDSQLGELMEDEQVPNPMEVAITAGLQTGAQQLLAALSPREAQVVAMRFGIGMDTD 536 Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 TL +V ++ L+RER+RQI+ + L +LR + ++ L Sbjct: 537 HTLGEVAQQFDLSRERIRQIEAQALGKLRRLGHSKAL 573 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 28/72 (38%) Query: 23 EVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARR 82 E D L++ + L +T V D Y+ E+G LLT EEE+ A+ Sbjct: 60 EALDSTLLLKNSSEEEIAETLPTLEGESTGAVSDMVYAYMREMGAHALLTREEEITLAKA 119 Query: 83 ALRGDVASRRRM 94 G S + Sbjct: 120 IETGLSQSTEAL 131 >UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RNE4_9CLOT Length = 298 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 107/288 (37%), Positives = 168/288 (58%), Gaps = 5/288 (1%) Query: 37 DNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIE 96 + E+ + D+ Q YL + G PLLT EEE+ A G +R++MI Sbjct: 8 KQEKTLEKAKVDNVYEIETDSVQWYLKQAGVGPLLTKEEEIELAYLIQEGSDEARQKMIS 67 Query: 97 SNLRLVVKIARRYGNR--GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 154 SNLRLV+ A++Y L LLDLI+EGNLGLI+AVEK++PE GFRFSTYA+WWI+Q I Sbjct: 68 SNLRLVINQAKKYVTYTQSLTLLDLIQEGNLGLIKAVEKYNPELGFRFSTYASWWIKQAI 127 Query: 155 ERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR 214 RAI + IRLP+H +++ R E+ + D + E++ + + ++L Sbjct: 128 TRAISVLDKAIRLPVHFCEDIQKVKRATHEIMQQNDI-VTPEKLKDITGFSEGKIEKILM 186 Query: 215 LNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVL 274 S++TP+G + L D + D E+ ++ M++ I + + L +++ +L Sbjct: 187 NMNHTISLETPVGEE--ATLGDFVEDTLTPSIEEQAMENAMQREISRQMECLRPREQTIL 244 Query: 275 ARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 A RFGL G TLE+VG+++G+TRER+RQI+++ LR+LR +++ L Sbjct: 245 ALRFGLNGQNPHTLEEVGKQMGVTRERIRQIEMKALRKLRHPNRSRYL 292 >UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilonproteobacteria RepID=RPOD_HELPJ Length = 681 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 99/244 (40%), Positives = 157/244 (64%), Gaps = 1/244 (0%) Query: 74 EEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 +E + +R ++ +M +SNLRLVV IA+R+ +RGL LDLI+EGN+GL++AV+K Sbjct: 426 KEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDK 485 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 F+ E+GF+FSTYATWWI+Q I RAI +Q RTIR+PIH++ +N + R+ + EP Sbjct: 486 FEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEP 545 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253 E +AE++ +D V ++++ + S++TP+G D + D + D+ D + Sbjct: 546 DLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMRE 605 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYE-AATLEDVGREIGLTRERVRQIQVEGLRR 312 D+K I L +LN +++ V+ RFGLL E TLE++G+E+ +TRERVRQI+ +++ Sbjct: 606 DLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKK 665 Query: 313 LREI 316 LR Sbjct: 666 LRSP 669 Score = 42.8 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 7/93 (7%) Query: 2 SQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLY 61 S K + + + E +V DE+ + E R ++Y Sbjct: 121 SSEYAKKLNAIDKIKNTEEKQKVLDEELEDGYDFLKEKDFLEW-------SRSDSPVRMY 173 Query: 62 LGEIGYSPLLTAEEEVYFARRALRGDVASRRRM 94 L E+G LL+ +EE+ +++ G+ + Sbjct: 174 LREMGDIKLLSKDEEIELSKQIRLGEDIILDAI 206 >UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes RepID=Q2SRY7_MYCCT Length = 505 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 191/368 (51%), Gaps = 61/368 (16%) Query: 10 DLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSP 69 D++ + + DE + + ++ + + ++ D + Y +IG +P Sbjct: 124 DVHINDDLDEFK-QAKSAALRGRKSAKSSNHMKYRVGGISNETKIQDIIKTYFYKIGQAP 182 Query: 70 LLTAEEEVYFARRALRGDVAS----RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNL 125 +LT ++E+ +A+ A+ D R ++IESNL+LV+ +AR++ NRGL DLIEEGN+ Sbjct: 183 ILTKDQEIMYAKMAVSDDPEDVKEGRNKLIESNLKLVISVARKHLNRGLDFADLIEEGNI 242 Query: 126 GLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAREL 185 GL++AV+KF+ E+GF+FSTYATWWI Q I RAI +Q RTIR+P+H+V+ +N R R+L Sbjct: 243 GLMKAVDKFEYEKGFKFSTYATWWISQAITRAIADQARTIRIPVHMVETINKLARVERQL 302 Query: 186 SHKLDHEPSAEEIAEQL--DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKE 243 + +L EP+AEEIA ++ D V + +L+ S++ P G + + D + D+ Sbjct: 303 TQELGREPNAEEIANRVGEGITSDKVIEIKKLSIEPVSLEKPFGDEDDTHFGDFVEDKDM 362 Query: 244 NGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATL--------------- 288 P + T+ + +K+ + K ++ ++ +V+ R+G++ TL Sbjct: 363 VSPSEYTEKEILKEVMDKVFEDMPPREEKVIRMRYGIVPTRLRTLLRLAQECNDTNAKEL 422 Query: 289 ----EDV-----------------------------------GREIGLTRERVRQIQVEG 309 E++ G+E+ +TRER+RQI+ + Sbjct: 423 KQAIEELDIHLDTPIEKVRKFNNEIINNNLAKYDSARTLEEVGKELNVTRERIRQIEAKT 482 Query: 310 LRRLREIL 317 +R+L++ Sbjct: 483 IRKLKQPS 490 >UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteobacteria RepID=Q6AK94_DESPS Length = 447 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 152/250 (60%), Gaps = 1/250 (0%) Query: 75 EEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 E R ++ MI +NLRLVV IA+RY ++GL L DLI+EGNLGL+RAV +F Sbjct: 196 ELQAKLEAYSRSIEVAKDTMIRANLRLVVSIAKRYMHQGLTLADLIQEGNLGLMRAVFRF 255 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D +G +FSTYA+WWIRQ I RAI+++TRTIRLP+H ++ + + + L +L EP+ Sbjct: 256 DYTKGNKFSTYASWWIRQAITRAILDKTRTIRLPVHFLELRSQFFKAFYALFKELGREPT 315 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 EI++ + P+D + +L + S++TP+G D + L D L +++ P + Q+ + Sbjct: 316 PLEISKTTNLPMDKILSILEASREPISLETPVG-DDDSTLGDFLENQESQSPYEAVQNRE 374 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 + + + L L+ ++ +++ RFG+ TLE++G+ ++RER+RQI+ + L RLR Sbjct: 375 LSGRVTEILSTLSDREEKIIRLRFGIGEKAEYTLEEIGKRFNVSRERIRQIEKKALNRLR 434 Query: 315 EILQTQGLNI 324 + L Sbjct: 435 HSSRRDKLKF 444 >UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacteria RepID=B7K407_CYAP8 Length = 328 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 163/303 (53%), Gaps = 41/303 (13%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALR---------------------------- 85 D + YL EIG PLLT E+E+ + ++ R Sbjct: 16 SADMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAV 75 Query: 86 ------------GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 ++R+MIE+NLRLVV IA++Y R + LDLI+EG+LGL R VEK Sbjct: 76 NLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEK 135 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 FDP +G++FSTYA WWIRQ I RAI Q RTIRLPIHI ++LN +T RELS KL Sbjct: 136 FDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSA 195 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253 + EIA L+ + L + + S+D +G + + L ++L D + P+ + Sbjct: 196 TPAEIAAVLEIEPSQIRECLSMARQPISLDVRVGDNQDTELSELLEDHEA-SPDQYITQE 254 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 ++Q + + EL +QR VL RFGL + +L +G+++ ++RERVRQ++ + L +L Sbjct: 255 LLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQALAQL 314 Query: 314 REI 316 R Sbjct: 315 RRR 317 >UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycetales RepID=A6CE36_9PLAN Length = 588 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 92/243 (37%), Positives = 151/243 (62%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 +R +++++ NLRLVV IA++Y NRGL+ LDLI+EGN GL+R VEK++ RG Sbjct: 310 IKRRFDDWTEAKQQLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEYRRG 369 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 ++FSTYATWWIRQ I RA+ + RTIR+P+H+ + ++ + ++ + EP+ EE+A Sbjct: 370 YKFSTYATWWIRQAITRAVADHARTIRIPVHMFQSISTLKARSEQIRQETGREPTMEELA 429 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 + + V++ R+++ + S+DTP+G + + D L D E+ P D + +K I Sbjct: 430 DSVGLGVEETERIMKTWKHPISLDTPVGESEDSSFGDFLEDGHESSPADAAMREMLKDKI 489 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 L L ++RE++ R+GL + TLE+ GR +TRER+RQI+ + LR+L+ ++ Sbjct: 490 EHVLKSLTYREREIIRLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKALRKLQHQTRS 549 Query: 320 QGL 322 L Sbjct: 550 AHL 552 Score = 42.8 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 7/95 (7%) Query: 10 DLNED--AEFDENGVEVFDEKALVEQEPSDNDLAEEE-----LLSQGATQRVLDATQLYL 62 DL +D A+ D+ V D A + + + + ++ + D ++YL Sbjct: 53 DLIDDPNADIDDEEVASVDSSANTHSDVAQGADEDSDDASSSIVEPETSLSSRDPIRMYL 112 Query: 63 GEIGYSPLLTAEEEVYFARRALRGDVASRRRMIES 97 ++G PLL+ E++ A++ RR ++ES Sbjct: 113 SQMGNIPLLSRSREIFLAKKIEITRKRFRRTVLES 147 >UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JRK5_SYNJA Length = 361 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 123/332 (37%), Positives = 173/332 (52%), Gaps = 42/332 (12%) Query: 25 FDEKALVEQEPSDNDLAEEELLSQGAT--QRVLDATQLYLGEIGYSPLLTAEEEVYFARR 82 + +E E + D A E L GA+ + DA YL IG P + EE+ +R+ Sbjct: 17 ELDDLWLEAESASQDPAAEADLEPGASGLRLNEDAVDHYLNTIGRVPRIDHAEEIELSRK 76 Query: 83 AL----------------------------------------RGDVASRRRMIESNLRLV 102 R ++R++I +NLRLV Sbjct: 77 IQQKLLIDQARREWRQQWGQDPSDEELAAALQIPVSTLRSRIRQGEQAQRKLINANLRLV 136 Query: 103 VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQT 162 V +A++Y NRG+ LDLI+EGN+GLIRA EKF+ ERGFRFSTYA WWIRQ I R I NQ Sbjct: 137 VSVAKKYLNRGVPFLDLIQEGNMGLIRATEKFNAERGFRFSTYAHWWIRQGITRCIANQA 196 Query: 163 RTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSV 222 RTIRLP+H+V ++ + RT REL P+ E+AE L V + + + S+ Sbjct: 197 RTIRLPVHMVDKVRLLKRTNRELMKARGRRPTEAELAEALGIKVKKLRMIQQAAALPLSL 256 Query: 223 DTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLG 282 D P+G + E L D+L DE++ P + ++Q + + L +R+VL R+GL G Sbjct: 257 DVPVGQEGESRLGDLLPDERQEQPFEEILVQSLRQDVRSAMQALKPIERQVLELRYGLDG 316 Query: 283 YEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 A TL +VG LTRER+RQI+ + LR+LR Sbjct: 317 QRARTLREVGDHFNLTRERIRQIERDALRKLR 348 >UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycoplasma RepID=RPOD_MYCPN Length = 499 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 110/333 (33%), Positives = 187/333 (56%), Gaps = 13/333 (3%) Query: 8 VHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQR--VLDATQLYLGEI 65 + +L + + VE + Q+ S D EEL ++ + R V D + +LG + Sbjct: 160 LDELRDKGIELPHDVEEHIHEFRANQDLSIIDEDIEELTTKNISNRDKVDDNVRFFLGSL 219 Query: 66 GYSPLLTAEEEVYFARRALRGDVASR----RRMIESNLRLVVKIARRYGNRGLALLDLIE 121 S +L E E A+ D SR +++ SNLRLVV IA+++ RGL DLI+ Sbjct: 220 DSSKMLDFESEQRIAKVLNSTDEESRKYAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQ 279 Query: 122 EGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRT 181 EGNLGL++A+ KF+ G +FSTYATWWI+Q I RAI +Q RT+R+P+H+V+ +N + Sbjct: 280 EGNLGLLKAISKFNWSLGNKFSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKA 339 Query: 182 ARELSHKLDHEPSAEEIAEQL-----DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLD 236 R L+ +L EP+AEE+AE++ V ++ + RL+ S+D +G D E D Sbjct: 340 ERALNQELGREPTAEELAEKMGGQAEGFTVKKIAEIKRLSLDPVSLDKTVGHDEESQFGD 399 Query: 237 ILADEKENGPEDTTQDDDMKQSIVKWLFE-LNAKQREVLARRFGLLGY-EAATLEDVGRE 294 + D P++ T+ + I + L L+ ++ ++ R G+ Y E TL++V ++ Sbjct: 400 FVRDTDAQMPDEFTESRSNYEKIDELLNNCLSEQEELIVRMRIGMPPYNETKTLDEVSQK 459 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGLNIEAL 327 I + RE++RQI+ + +R+LR+ ++ +++ + Sbjct: 460 IKIPREKIRQIETKAIRKLRQAVRNNHMSLSFM 492 >UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacterium RepID=Q1Z2N9_PHOPR Length = 291 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 142/288 (49%), Positives = 195/288 (67%), Gaps = 1/288 (0%) Query: 44 ELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVV 103 E+ D QLYL EI PLLT EE+ ++R++L GD +++ MIESNLRLVV Sbjct: 2 EIKKAETQTFDADVIQLYLREIALKPLLTKHEEILYSRKSLTGDKEAKKVMIESNLRLVV 61 Query: 104 KIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTR 163 IA++Y G+ L DLI+EGN+GLI +VEKFDPERGFRFSTYATWWI+QTIER I NQ R Sbjct: 62 SIAKKYRGSGMQLSDLIDEGNIGLITSVEKFDPERGFRFSTYATWWIKQTIERCIHNQAR 121 Query: 164 TIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVD 223 TIRLP+H+ KE+N +RT ++L K + EP+ EE+AE+L++ VDD+S +L + I S D Sbjct: 122 TIRLPVHVSKEINTIIRTHKQLMKKNNQEPTREEVAEKLERSVDDISSVLAYDAPIVSFD 181 Query: 224 TPLGGDSEK-ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLG 282 + D+ ++ +AD+ + PE DD+K + L LN + RE+L RRFGLLG Sbjct: 182 QTINDDANSQSISVFIADDSSDKPESQVDKDDIKGLALAMLENLNQRDREILCRRFGLLG 241 Query: 283 YEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 YE TL+ V E+GLTRER+RQ+QV L++L+ L+ ++E LF + Sbjct: 242 YEVQTLQQVANEVGLTRERIRQLQVSSLKKLKNTLERDNYDLELLFAQ 289 >UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 Tax=Actinomycetales RepID=HRDC_STRCO Length = 339 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 163/302 (53%), Gaps = 31/302 (10%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG------------------------- 86 D YL +IG +PLLTAE+EV A R G Sbjct: 33 DEEPDLLGQYLTQIGATPLLTAEDEVRLATRIEAGVRAREELETADTGEPAPTPRRRRTL 92 Query: 87 ------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 ++ M+ +NLRLVV +A+R+ +RGL LLD+I+EGNLGLIRAVEKFD +GF Sbjct: 93 EETVHDGQEAKDHMVRANLRLVVSMAKRHAHRGLPLLDVIQEGNLGLIRAVEKFDHTKGF 152 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYATWWIRQ IER + RT+RLP+H+V++L + R+L LD EP+ EE+A Sbjct: 153 KFSTYATWWIRQAIERGLATHARTVRLPVHVVEQLQKLAKVERKLRAGLDREPTTEEVAA 212 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 + VD V + R+ S+DTP+ + + D++ D + + + + + Sbjct: 213 ESGIDVDKVVWLRRVGRDAVSLDTPVDETGDTVVGDLIPDTEVLRAPEVAEFQALAAELR 272 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 + + L ++ +L+ R+GL TL+ V + +GLTRERVRQ++ E L LR + Sbjct: 273 EAVGTLAPRESLILSLRYGLHDGRPRTLQQVAQHVGLTRERVRQLEKESLAHLRAPENRE 332 Query: 321 GL 322 L Sbjct: 333 RL 334 >UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A692_GEMAT Length = 295 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 98/266 (36%), Positives = 156/266 (58%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY 109 ++ D YL E+ PLL A EE+ A++ GD + + +++ NLR V+ +A++Y Sbjct: 18 PSEPERDILDQYLYEVSTYPLLKAAEEIELAKKIRAGDQDALQELVKRNLRFVISVAKKY 77 Query: 110 GNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 NRGL L+DLI EGN+GL+ A KFDP++G +F +YA WWIRQ I ++ Q RT+R+P+ Sbjct: 78 QNRGLPLIDLIGEGNVGLLTAARKFDPDQGVKFISYAVWWIRQAILSSLARQGRTVRVPL 137 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD 229 + +L+ ++ + L KL EPS EE+A+ VD V + LN +D P+ D Sbjct: 138 NRTADLSRIIKASEILRQKLRREPSPEELAQVTGLSVDVVQSLAALNTGDVRLDAPMDPD 197 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLE 289 +++L++ ++ E+ + + I + L L + +VL FGL G TLE Sbjct: 198 GDRSLIERFVADEMPDTEEEAMNRFLTDEIEQALSTLPPRDAKVLRLYFGLEGGREHTLE 257 Query: 290 DVGREIGLTRERVRQIQVEGLRRLRE 315 ++G +G+TRERVRQ++ L+RLRE Sbjct: 258 EIGSMLGVTRERVRQLRDRALKRLRE 283 >UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=2 Tax=stramenopiles RepID=A5JEM2_9STRA Length = 404 Score = 296 bits (760), Expect = 6e-79, Method: Composition-based stats. Identities = 103/330 (31%), Positives = 165/330 (50%), Gaps = 55/330 (16%) Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRGDV-------------------------- 88 D + Y+ ++ +LTA+EE+ R+ RG Sbjct: 72 SDTMKEYVKDLRTVDMLTAQEEILLTRQIKRGMEIEKALVTLEKTLGRKPTEEEWVNFVG 131 Query: 89 ---------------ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 S+ +I +NLRLVV A+ Y RG++ DL++EG GL +A EK Sbjct: 132 LKSIDDIRKNLKRASKSKSAIINANLRLVVSTAKAYQYRGVSFQDLVQEGTCGLHKATEK 191 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 FDP +GFRFSTYATWWI+Q I RA+ +Q+R +RLP+H+ L R + EP Sbjct: 192 FDPRKGFRFSTYATWWIKQGIMRAVTDQSRVVRLPVHVHDALFHIRRAKANFWTEHLREP 251 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLG--------GDSEKALLDILADEKENG 245 + E+AE + + ++++S+D +G S+ A+ D+ D + N Sbjct: 252 TLAELAEATGLTPQKIVFYDTVKDKVSSIDKTVGIGTKTNSMEKSQIAISDMCKDSR-NK 310 Query: 246 PEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQI 305 PE+T Q + ++Q I + + L+ ++++V+ R+GL E TLE++G +TRERVRQI Sbjct: 311 PEETAQVESLRQDISRLINTLSPREQDVVRMRYGLDDGEIRTLEEIGSIFSVTRERVRQI 370 Query: 306 QVEGLRRLREILQTQGLN-----IEALFRE 330 + L +LR+ + L ++ALF E Sbjct: 371 EARALHKLRQPYRNHRLKGQLDSVDALFHE 400 >UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1 RepID=A6CZ07_9VIBR Length = 296 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 120/269 (44%), Positives = 175/269 (65%), Gaps = 2/269 (0%) Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 Y E+ LL+AE+E + AR+A GD +R+ +I SNLRLV++ A+RY NRGL DLI Sbjct: 27 YFKEVAGHDLLSAEDERHIARKARAGDTLARQHLINSNLRLVIRTAKRYSNRGLDFYDLI 86 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 EGN+GLI+AV+KFDPE G+RFSTYA WWI+Q I+RAIMNQ RTIR+P+H+ K++ + Sbjct: 87 NEGNIGLIQAVDKFDPELGYRFSTYAVWWIQQAIDRAIMNQGRTIRVPVHVTKQIRECSK 146 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSE--KALLDIL 238 A EL + +HEP++ EIAE+ + ++VS++L+L+E+ S+D + + L I Sbjct: 147 AAHELRKEGNHEPTSSEIAERTGRAPEEVSKLLKLSEQSLSLDNGWDEEGDKKDHLQTID 206 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D+ PE ++ ++++ + L KQR +L RFGLL + TLE VG +G+T Sbjct: 207 DDDVFELPEQDIVTQNLNKALIDLVDSLPDKQRVILHHRFGLLDDDPKTLEQVGEIVGVT 266 Query: 299 RERVRQIQVEGLRRLREILQTQGLNIEAL 327 RERVRQIQ + LR+ L+ Q L + Sbjct: 267 RERVRQIQKSAMETLRDKLKRQNLTRAEI 295 >UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsia RepID=Q2GE94_NEOSM Length = 620 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 106/323 (32%), Positives = 165/323 (51%), Gaps = 37/323 (11%) Query: 24 VFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRA 83 V + L E D + EE LS + E+ + + + R+ Sbjct: 305 VVLSELLKEHNICDTHFSLEEFLSP-------------IRELEKNEGMDYRSISFLTRKV 351 Query: 84 ---LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 L A++ RM+E+NLRLV+ IA++Y NRG+ DLI+EGN+GL++AV+KFD RG Sbjct: 352 ATHLDNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKAVDKFDHRRGH 411 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYATWW RQ I RAI + +R P+HI + N +RT R L + EP+ EEIA Sbjct: 412 KFSTYATWWCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRLYNLNGREPTVEEIAN 471 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEK-ALLDILADEKENGPEDTTQDDDMKQSI 259 L D V + L++N+ S+++P+G DS + D + D+ D ++++ + Sbjct: 472 LLKISPDKVKKSLKVNQDPISLESPVGDDSNSGSFGDFIEDKNAVSQVDVVLSKNLRKVL 531 Query: 260 VKWLFELNAKQREVLARRFG--------------------LLGYEAATLEDVGREIGLTR 299 + L L+ ++ ++L RFG L TLE VG +TR Sbjct: 532 DEALAMLSPREEKILRYRFGLCNSVHSPEDEHYLKSLKIDLNRGTNLTLEQVGILYNVTR 591 Query: 300 ERVRQIQVEGLRRLREILQTQGL 322 ER+RQI+ + LR++R ++ L Sbjct: 592 ERIRQIESKSLRKMRSPSRSIKL 614 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 15 AEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE 74 ++ +E+G+ + ++ E + EEE + D +LYL E+ Y LL+ + Sbjct: 51 SKLEESGIGILEKDEEDELSEEVKEEDEEEDEAADILGHTDDPVRLYLREMSYVKLLSRD 110 Query: 75 EEVYFARRA 83 +EV A+ Sbjct: 111 DEVEIAKAI 119 >UniRef50_Q3JAH2 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3JAH2_NITOC Length = 303 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 135/262 (51%), Positives = 189/262 (72%), Gaps = 1/262 (0%) Query: 59 QLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 LY+ E G PLL+AEEE ++AR A +GD +R +IESNLR+V+++A R+ NRGL L+D Sbjct: 40 NLYMREAGKVPLLSAEEERHYARLAQQGDREARNHIIESNLRIVIRMATRHINRGLPLMD 99 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LIEEGNLGLI AVEKF+PE GFRFSTYA+WWIRQ IERA+MNQTRTIR+PIH+ K++ Y Sbjct: 100 LIEEGNLGLIDAVEKFNPELGFRFSTYASWWIRQAIERALMNQTRTIRVPIHVFKKIRCY 159 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 + AR + + EP EIA+ L +P++ + R L L S+D PL D++ L+D+L Sbjct: 160 QKEARYFRQRYNIEPHLGEIAKLLHEPLERIQRYLSLQAPEISLDDPLSEDTDDCLVDLL 219 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 DE+ N P + D K SI L +L +Q+E++ R+GL GYE TLE++G+++G+T Sbjct: 220 PDER-NNPAILWEIFDKKASIHNQLSQLPERQQEIIKCRYGLDGYEVTTLEEIGQKLGIT 278 Query: 299 RERVRQIQVEGLRRLREILQTQ 320 RERVRQIQ ++RLR+I++++ Sbjct: 279 RERVRQIQQTAIKRLRKIIESE 300 >UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q116K5_TRIEI Length = 496 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 87/336 (25%), Positives = 159/336 (47%), Gaps = 42/336 (12%) Query: 27 EKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRAL-- 84 E +++ + + + D+ QLY ++ L EEE++ A + Sbjct: 158 EPTEELTNKHNSEGSYDPDIEPPTGTFTEDSIQLYYKQVNSFARLHPEEEIHLAHQIDGL 217 Query: 85 --------------------------------------RGDVASRRRMIESNLRLVVKIA 106 ++ +M+ +NLRLV +A Sbjct: 218 LALEKIYEKLEEKLNRSPNEIEWATEAKMSKWELCDRLEQGRRAKNQMVTANLRLVTSVA 277 Query: 107 RRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIR 166 +RY NRGL DLI+EG +GL+RA EKFD +G++FSTY WWIRQ I RAI + +R +R Sbjct: 278 KRYQNRGLDFQDLIQEGVIGLLRATEKFDHTKGYKFSTYGIWWIRQAITRAICDYSRIVR 337 Query: 167 LPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL 226 LP+++ + ++ + +++S + +AEE+A +++ + + ++ + S+D P+ Sbjct: 338 LPVYLYETISQIKKIVKQISIECS-PLTAEEVATRMEMTTEKLQFIIECAQETLSLDYPI 396 Query: 227 GGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAA 286 +++ P ++ +++ + L L ++R VL RFGL + Sbjct: 397 NKGENIIYKEMIK-FNGETPTKYVFENCLQEDVESVLKTLTERERNVLQMRFGLDDGQEK 455 Query: 287 TLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 TL+++G LTRER+RQI+ + LR+L + + L Sbjct: 456 TLKEIGDTFNLTRERIRQIEAKALRKLEDPKRNHIL 491 >UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea sitchensis RepID=B8LLW6_PICSI Length = 592 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 106/292 (36%), Positives = 165/292 (56%), Gaps = 7/292 (2%) Query: 39 DLAEEELLSQGATQRV-LDATQL-YLGEIGYSPLLTAEEEV-----YFARRALRGDVASR 91 +EE LS+G + LD + Y + G P L EV + L S Sbjct: 296 TASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGRDSF 355 Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 151 ++I NLRLV+ +A+ Y NRGL+L DLI+ G++GL+R+ EKFD RGF+FSTYA WWIR Sbjct: 356 DKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWIR 415 Query: 152 QTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSR 211 Q+I +A+ Q+RTIRLP+HIV+ + R L + +P+ EE+AE + + Sbjct: 416 QSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRH 475 Query: 212 MLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQR 271 + R + TS+D +G D ++ +I+AD E + K+ + + L L A+++ Sbjct: 476 VTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTAREK 535 Query: 272 EVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 +V+ R+GL +L +VG L+RERVRQI+++ +R+LR+ +TQ L Sbjct: 536 QVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLK 587 >UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 Tax=Actinomycetales RepID=HRDD_STRVF Length = 332 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 109/326 (33%), Positives = 162/326 (49%), Gaps = 28/326 (8%) Query: 29 ALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG-- 86 A + + + + + G D +YL EI +PLL A +EV ++ G Sbjct: 7 ARRQSATGETADSASSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVF 66 Query: 87 --------------------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 ++ I SNLRLVV +ARRY GL LLDLI Sbjct: 67 AQQVLDGEEESRTDATREELQALVDAGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLI 126 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 +EGN GL+RAVEKFD +GF+FSTYATWWIRQ I R+I +Q+RTIRLP+H+V+EL R Sbjct: 127 QEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRR 186 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD 240 RE + + +P E+A +L + V +L S++ + E D+L D Sbjct: 187 VQREFNREHGRDPEPAEVAAELGSTPERVIDVLDWARDPVSLNMAVDDAGETQFGDLLED 246 Query: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 PE + + + + L+ + ++ R+G+ TL +VG+E GLTRE Sbjct: 247 TSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRE 306 Query: 301 RVRQIQVEGLRRLREILQTQGLNIEA 326 R+RQI+ L L+++ + G + A Sbjct: 307 RIRQIEKHALLELKKLARDTGFDAAA 332 >UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobia RepID=B2KBW8_ELUMP Length = 571 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 92/234 (39%), Positives = 149/234 (63%) Query: 93 RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQ 152 ++I++NLRLVV IA+++ N L L DLI+EG LGL++AVEKF+ +RGF+FSTYATWWIRQ Sbjct: 336 KLIKANLRLVVSIAKKHVNSNLELSDLIQEGGLGLMKAVEKFEYKRGFKFSTYATWWIRQ 395 Query: 153 TIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM 212 +I RAI +Q TIR+P+H+ + ++ + + + EPS E+ ++ L ++ V + Sbjct: 396 SINRAIADQANTIRIPVHMKELVSKLTKVTNKFRQEHGREPSLEDYSKSLRLSMEKVKGV 455 Query: 213 LRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQRE 272 L++ + S+ TP+G D + L D + D+ P T D KQ + + L L+ ++ + Sbjct: 456 LKIMQDPISLSTPVGEDEDSNLEDFIEDKAGANPTVTASDFLRKQEVSEVLNTLSEREAK 515 Query: 273 VLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEA 326 ++ RFG+ TLE+VG+ +TRERVRQI+ + +R+LR +T+ L + Sbjct: 516 IIRLRFGIDSGYPRTLEEVGKMFNVTRERVRQIEAKAIRKLRHPSRTKMLKDYS 569 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 1 MSQNTLKVHDLNEDAE-FDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQ 59 ++ +++ D++ ++ G++V D K ++ + EE + A + ++ + Sbjct: 31 LTSSSMSAEDIDGLMGTLEDLGIQVVDRKKYKSVAMAEKEAYTEEFM---ANPDISNSIR 87 Query: 60 LYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIES 97 +YL E+G PLL+ +EE+ AR + R+ ++ES Sbjct: 88 MYLSEMGKVPLLSRDEEITLARNVREREKELRKLVLES 125 >UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepID=Q9LD95_ARATH Length = 547 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 166/350 (47%), Gaps = 48/350 (13%) Query: 25 FDEKALVEQEPSDNDLAEEELLSQGATQR--------VLDATQLYLGEIGYSPLLTAEEE 76 + +A + P ND+ +E + Q + + DA QL+L LLTA+EE Sbjct: 194 LERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEE 253 Query: 77 VYFARRALR----------------------------------------GDVASRRRMIE 96 +SR ++I Sbjct: 254 AELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLIT 313 Query: 97 SNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIER 156 +NLRLVV IA++Y NRGL DL++EG++GL+++VEKF P+ G RF+TYA WWIRQ+I + Sbjct: 314 ANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRK 373 Query: 157 AIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLN 216 +I +RTIRLP ++ L + + ++ PS EE+A + + + ++L Sbjct: 374 SIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNT 433 Query: 217 ERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLAR 276 S+ P+ D + +I D P + M+ + L L+ K+R ++ Sbjct: 434 RTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKL 493 Query: 277 RFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEA 326 RFG+ G + +L ++G GL++ERVRQ++ L RL++ + + GL+ A Sbjct: 494 RFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYA 543 >UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L491_THERP Length = 334 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 103/288 (35%), Positives = 161/288 (55%), Gaps = 22/288 (7%) Query: 50 ATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG----------------------D 87 Q DA Y E+G LLT +EE+ ++R G Sbjct: 37 IDQAANDAVYRYFREVGGHRLLTHQEEIEYSRAVRAGLAARKRIEAGEDTPELRELVRKG 96 Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 +R ++I NLRLVV IA+RY + L L+DLI+EGN+GL+ AVE++DPE G+RFSTYAT Sbjct: 97 QEAREKLIRHNLRLVVSIAKRYRSSELPLIDLIQEGNIGLMTAVERYDPELGYRFSTYAT 156 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 +WIRQ I RA+ N +RTIR+P+H+ + R ++ + + EE+AE L V Sbjct: 157 FWIRQAIGRAVANLSRTIRVPVHMHDLIAKIRRAEAQIEQQKGRPATNEELAELLGIDVA 216 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 + + R +S+D P+G D E ++ D+L D + + + + +++ I + L +L Sbjct: 217 RIEQARTQIPRTSSLDKPIGEDGESSIGDLLPDPRSDDVVEEALTNAIREQIRRSLEQLT 276 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 ++R VL RFGL G + TL ++ + ++RERVRQ++ E L++LR Sbjct: 277 ERERTVLVMRFGLDGEQPRTLAEIADALKISRERVRQVEKEALQKLRN 324 >UniRef50_B2VA41 RNA polymerase sigma factor n=2 Tax=Hydrogenothermaceae RepID=B2VA41_SULSY Length = 281 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 97/262 (37%), Positives = 154/262 (58%), Gaps = 2/262 (0%) Query: 49 GATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARR 108 A Q L QLY+ ++G P+L+ EEE A RA +GD + ++++E NLR VV IA+ Sbjct: 1 MAEQDELTTLQLYMQQMGKHPMLSPEEEKELAIRAKQGDKEALKKLVEGNLRFVVSIAKN 60 Query: 109 YGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP 168 + G+ L DLI GNLGLI A ++FDP++ +F +YA WWIRQ I + I QT +R+P Sbjct: 61 FMGWGVPLTDLIAAGNLGLIEAAKRFDPDKNVKFISYAVWWIRQAIMQTIFQQTGAVRIP 120 Query: 169 IHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG 228 + + T +L +L EP+ EEIA++L+ V V L + S+D PLG Sbjct: 121 VKESLFIAKVKETYEKLKEELGREPTEEEIAKRLNTSVKKVKNALSIVRLPISLDMPLGE 180 Query: 229 --DSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAA 286 + + LLD+L+ + E ++ + + + L L+ +++E++ R+GL G E Sbjct: 181 GGEEDFTLLDVLSKKGTEDIEKELIEETIHKELESMLDVLDEREKEIIKMRYGLDGEEPK 240 Query: 287 TLEDVGREIGLTRERVRQIQVE 308 TLE+VG ++G++RERVRQ++ Sbjct: 241 TLEEVGEKLGISRERVRQLEQR 262 >UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=A5IY54_MYCAP Length = 509 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 99/315 (31%), Positives = 180/315 (57%), Gaps = 14/315 (4%) Query: 24 VFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS-PLLTAEEEVYFARR 82 + E E+ +L+ ++ + D + Y+ IG LL EEE A Sbjct: 192 LELEDFSAEEIDLSANLSVKKEDLKNKLTETNDIVKWYMRWIGKYGKLLQPEEEFELATE 251 Query: 83 ALRGD---VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 +G +R ++I+ NLRLV+ A++Y NRGL+ +DLI EGN G+I+AV+K++ +G Sbjct: 252 MDKGGFKGKRARDKLIKRNLRLVINNAKKYKNRGLSFIDLISEGNSGIIKAVQKYNVNKG 311 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 F+FSTYATWWIRQ I RA+ +Q+RT+R+P+H+V+ +N + REL + +P+ EEIA Sbjct: 312 FKFSTYATWWIRQAITRAVADQSRTVRVPVHMVETINKITKIERELQQENGVDPTDEEIA 371 Query: 200 EQLD--KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257 ++ + V + ++N S+D +G +++ + D + DE P D +++ + Sbjct: 372 QRYGNDFTAEKVRHIRKINIDPISLDKQIGKENDSSFSDFVKDESVVNPVDYASHEELVE 431 Query: 258 SIVKWL-FELNAKQREVLARRFGLL------GYEAATLEDVGREIGLTRERVRQIQVEGL 310 ++ L L+A + E++ +R+G+ Y+ +LE++ E +++ER+RQI+ + L Sbjct: 432 TLNAILKDTLDADEYELICKRYGVGFDNNGEKYKVFSLEELALERNVSKERIRQIENKIL 491 Query: 311 RRLR-EILQTQGLNI 324 R+L+ +++ L + Sbjct: 492 RKLKSSPERSRYLKV 506 >UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SG50_RHOSR Length = 520 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 109/328 (33%), Positives = 173/328 (52%), Gaps = 34/328 (10%) Query: 26 DEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALR 85 + K + E D D E +D+ + Y I LL + +E A R Sbjct: 189 NSKTALPPELDDGDPGAEAATDVDEY-ETVDSIRAYSKSIKKRSLLVSGDESELAERIEA 247 Query: 86 G-------------------------------DVASRRRMIESNLRLVVKIARRYGNRGL 114 G ++RR +E+NLRLVV IARRY RGL Sbjct: 248 GLYAAYLLKEAEDAGEKLSDQRHRDLHRVCRDGQHAKRRFLEANLRLVVSIARRYQGRGL 307 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 LLDL++EGNLGLIRAVEKFD + GF+FSTYATWWIRQ I RA+ +Q+R IR+P+H+V++ Sbjct: 308 DLLDLVQEGNLGLIRAVEKFDYKTGFKFSTYATWWIRQAITRALADQSRVIRIPVHMVEQ 367 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKAL 234 ++ + L+ + EP+ E+A LD ++ + + + ++R+ S+D L ++E Sbjct: 368 IDQLGKERARLTKETGREPTPSELATALDTTIEHIGDLEKYDQRVLSLD-VLTDNAEHDG 426 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 LD D+ E+ + +++ L L+ + +V+ R+GL G + TL+++G+ Sbjct: 427 LDF-EDDLAVVAEEVAERRRFYETLESVLSPLSERDAQVIRLRYGLTGSDPYTLDEIGKI 485 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGL 322 G+TRER+RQI+ + L+ ++E L Sbjct: 486 YGVTRERIRQIESKLLKAMKEESVADIL 513 >UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3QZV6_PHYMT Length = 419 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 112/350 (32%), Positives = 176/350 (50%), Gaps = 33/350 (9%) Query: 7 KVHDLNEDAEFDENGVEVFDE-KALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEI 65 + D ++ +E + DE LV E + + + D ++YL EI Sbjct: 61 DLSDSLDEIILEEEDLVYEDETDTLVLDEFEEKKEEFLNIDKNPIDLKFYDPVKIYLKEI 120 Query: 66 GYSPLLTAEEEVYFARRALRGDV-------------------------------ASRRRM 94 G PLLT EEE R G ++ R+ Sbjct: 121 GQIPLLTLEEEQEQFRLVYDGREAEAKLESYRKKEIELSEKEISELNDILKISNKAKHRL 180 Query: 95 IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 154 +E+N RLVV IA+RY RGL LDLI+EGN GL+RA+EKF+ ++G + STYAT+WI Q I Sbjct: 181 VEANYRLVVSIAKRYIRRGLEFLDLIQEGNRGLMRAIEKFNIDKGCKLSTYATFWIVQKI 240 Query: 155 ERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR 214 RA+ +Q R IRLP+HIV +N+ +L KL EP+ EE++E ++ + + Sbjct: 241 LRAVADQARIIRLPVHIVDRINIISMAKSKLRLKLHREPTIEELSEFINISEKKLRIIEI 300 Query: 215 LNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL-FELNAKQREV 273 + ++ S++ +G + +L + ++D P D + MK ++ + L L ++ ++ Sbjct: 301 IKKKPISLEARVGEKDDSSLGEFISDPDSLSPHDYMLQEIMKNTLNEILEDTLTDREEKI 360 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 L R+GL + TLE+VG G+TRER+RQI+ + RRLR + L Sbjct: 361 LRMRYGLSNGKVHTLEEVGNVFGVTRERIRQIEAKAFRRLRTPARQNKLK 410 >UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x (Fragment) n=2 Tax=rosids RepID=D1IHF7_VITVI Length = 561 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 97/365 (26%), Positives = 158/365 (43%), Gaps = 40/365 (10%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 +S L + + + V + E D +L Sbjct: 192 ISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAVHENHGSRRAEVQRKINEGYDPKDPLRL 251 Query: 61 YLGEIGYSPLLTAEEEVYFARRAL------------------------------------ 84 +L LLTA+EE + Sbjct: 252 FLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVL 311 Query: 85 ----RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 SR+++I +NLR+VV IA++Y RGL L DL++EG++GL+ +VEKF P G Sbjct: 312 QSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGC 371 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 RF++YA WWIRQ + +AI +RTIRLP ++ L R + H+P+ EEIAE Sbjct: 372 RFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAE 431 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 ++ ++ + R+L S+ P+ D + ++ AD P+ + M+Q + Sbjct: 432 RVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVR 491 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ 320 L L K+R ++ RFG+ TL ++G G ++ERVRQ++ L +L++ L + Sbjct: 492 NLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSH 551 Query: 321 GLNIE 325 GL Sbjct: 552 GLESY 556 >UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNW0_ACAM1 Length = 299 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 103/278 (37%), Positives = 158/278 (56%), Gaps = 20/278 (7%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRAL------------------RGDVASRRRMIES 97 DA YL +G LLT EEV ++ + ++ RMI Sbjct: 10 DALGAYLTRMGGYSLLTHAEEVSLGQQIQSALNPPQGISQAELDQIQKRGKRAKHRMICG 69 Query: 98 NLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA 157 NLRLVV IA++Y RG+ L+DLI+EG+LGL RAVEKFDP +G+RFSTYA WWIRQ+I RA Sbjct: 70 NLRLVVTIAKKYQKRGMDLIDLIQEGSLGLERAVEKFDPAKGYRFSTYAYWWIRQSITRA 129 Query: 158 IMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNE 217 I Q+ TIR+P+H+ ++LN R RELS L P+ +E+ +L ++ + + L+ + Sbjct: 130 IAMQSHTIRIPVHMTEKLNRIKRVRRELSQTLGRTPTHQEMVAELGITLEQLQKTLQAAQ 189 Query: 218 --RITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLA 275 S++ +G D E L D+L D + P + + D ++ ++ L +LN +R VL Sbjct: 190 ISNPESLNIRVGKDQEMELGDLLEDLQMPSPNEVVEQDFLRNALWSALAQLNDNERTVLI 249 Query: 276 RRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 R+GL +L V +++G++RE VR+++ +L Sbjct: 250 LRYGLEDGRERSLYRVSQQMGISREWVRKLEQTAKSKL 287 >UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASS7_RUBXD Length = 282 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 116/263 (44%), Positives = 160/263 (60%), Gaps = 1/263 (0%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG 113 D YLG I LLTA EEV +RRA GD A+RRR+IESNLRLVV IA+RY RG Sbjct: 5 TEDVLTQYLGRIREGRLLTAGEEVELSRRARAGDGAARRRLIESNLRLVVAIAKRYRGRG 64 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 + DLI+EGN GLIRAVEKFDPE G RFSTYATWWIRQ + RA+ +Q R +RLP H+V Sbjct: 65 VPFEDLIQEGNAGLIRAVEKFDPEMGNRFSTYATWWIRQAVTRAVADQGRAVRLPAHVVD 124 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK- 232 + R LS +L EP+ EE+A +L ++ R+ +++ I+S+ LG + + Sbjct: 125 SVYRLRRAESALSVELGREPTDEEVAGRLGTSPEEARRLREVSQPISSISARLGDEEDGA 184 Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292 L D+L DE + + + + + + L ++ VL R GL G A TL +V Sbjct: 185 ELGDLLPDEAASEEYARVEAGPWRGVLREAVGSLPEREARVLRLRHGLDGERARTLREVS 244 Query: 293 REIGLTRERVRQIQVEGLRRLRE 315 +G+++ER RQ++++ LR LR Sbjct: 245 EILGISQERARQVELKALRTLRS 267 >UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML80_9BACT Length = 414 Score = 293 bits (750), Expect = 8e-78, Method: Composition-based stats. Identities = 93/235 (39%), Positives = 145/235 (61%), Gaps = 1/235 (0%) Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 ++ +++ NLRLVV IA+R+ RG+ LDLI+EGN+GL+RA E+F +GF+FSTYAT Sbjct: 177 ERAKEGLVQHNLRLVVDIAKRFTGRGMGFLDLIQEGNIGLMRAAERFQYRKGFKFSTYAT 236 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WW+RQ I RA+ +Q+RTIR+P+H + ++ + L+ KL EPS EEIA L + Sbjct: 237 WWVRQGILRAVADQSRTIRVPVHTTEAWQRMIKISHRLAQKLGREPSNEEIALALAVKPE 296 Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 V + S D P D E L D L D+ + P++ Q++ M+ + + L L Sbjct: 297 RVQHTTQAFLEPISFDQP-NADGETFLGDCLPDDHASPPDEHLQEEQMRSQLHRLLRVLT 355 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++ +V+ RFG+ ++ TLE+VG+ + +TRER+RQI+V +++LRE L Sbjct: 356 PREEQVIRLRFGIGNGQSRTLEEVGKLLNVTRERIRQIEVLAMKKLREPTVKAQL 410 >UniRef50_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DV14_SULAA Length = 282 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 99/259 (38%), Positives = 151/259 (58%), Gaps = 2/259 (0%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGN 111 + L QLY+ ++G P+LT EEE A RA +GD + ++++E NLR VV IA+ + Sbjct: 5 DQELTTLQLYMQQMGKYPMLTPEEERELAIRAKKGDKEALKKLVEGNLRFVVNIAKNFMG 64 Query: 112 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 171 G+ L DLI GNLGLI A ++FDP++ +F +YA WWIRQ I + I QT +R+PI Sbjct: 65 WGVPLTDLIAAGNLGLIEAAKRFDPDKNVKFISYAVWWIRQAIMQTIFQQTGAVRIPIKE 124 Query: 172 VKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG--D 229 ++ +L L EP+ EEIA++L V V L + + S+D PLG + Sbjct: 125 SLFISKVKNAYEKLKESLGREPTEEEIAKELKTSVKKVKNALAIVRQPISLDMPLGEGGE 184 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLE 289 + LLDIL+ + E + +K+ + L L+ ++RE++ R+GL G E TLE Sbjct: 185 EDFTLLDILSKKGTEDVEKDLVESTLKEEFERLLNVLDEREREIIKLRYGLEGLEPKTLE 244 Query: 290 DVGREIGLTRERVRQIQVE 308 +VG +G++RERVRQ++ Sbjct: 245 EVGEMLGISRERVRQLEQR 263 >UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 Tax=Propionibacterium acnes RepID=Q6A8Y3_PROAC Length = 312 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 110/292 (37%), Positives = 158/292 (54%), Gaps = 28/292 (9%) Query: 53 RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG-------------------------- 86 DA LYL I +PLL A EEV ARR G Sbjct: 14 DGKDAVGLYLDGIARTPLLNAAEEVALARRIEAGVFARAILEGHAETTSDTTTKELHQIA 73 Query: 87 --DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFST 144 + + +NLRLVV +AR+YG + LLDL++EGN GLIRAVEKFD +GF+FST Sbjct: 74 ADGDEALAHFVRANLRLVVSVARKYGRSQMPLLDLVQEGNTGLIRAVEKFDYAKGFKFST 133 Query: 145 YATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDK 204 YATWW+RQ I R I Q R +RLP+H+ +++N R L +L EP EIA++L+ Sbjct: 134 YATWWVRQAISRGIAQQGRIVRLPVHVAEQVNQVSAARRNLERQLGREPETFEIADELEI 193 Query: 205 PVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLF 264 + V ++R S+D P+ D + +L D++A E GP+D D + + + L Sbjct: 194 TEERVIELIRFGRDHVSLDAPVEDDGDTSLGDLIARETSPGPDDIVLDAEDRSRLEGLLD 253 Query: 265 ELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 +L+ + +V+ RR+GL+ A L D+G+ G+T ERVRQI+ L +R+ Sbjct: 254 DLDERSADVVRRRYGLVDGRQAKLADIGKVWGITAERVRQIERAALASMRQR 305 >UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMH4_MYCA5 Length = 513 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 95/318 (29%), Positives = 173/318 (54%), Gaps = 18/318 (5%) Query: 24 VFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS-PLLTAEEEVYFARR 82 + E E + D ++ E+ + D + Y+ IG LLT ++E A + Sbjct: 185 LLKEYDTYEIKLEDQHISREDNMLSNKLTETNDIVKWYMRWIGKYGKLLTPKKERELAIK 244 Query: 83 ALR--------GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 +R +++ NLRLV+ A+RY NRGL+ +DLI EGN G+++AV K+ Sbjct: 245 MEEALANNNYYRYKRARDMLVKRNLRLVINNAKRYKNRGLSFIDLISEGNSGIMKAVSKY 304 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D ++GF+FSTYATWWIRQ I RA+ +Q RTIR+P+H+V+ +N L+ REL + + P+ Sbjct: 305 DYKKGFKFSTYATWWIRQAITRAVADQARTIRVPVHMVETINKILKIERELQQEFGYPPT 364 Query: 195 AEEIAEQLD--KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQD 252 EEIA++ + V + ++N S+D +G + + D + DE P D Sbjct: 365 DEEIAKKFGGDFTAEKVRYIRKINIDPISLDKNIGKEENSSFSDFVKDESVISPNDFASQ 424 Query: 253 DDMKQSIVKWL-FELNAKQREVLARRFGLLG------YEAATLEDVGREIGLTRERVRQI 305 ++ + + + L+ + + ++ +R+G+ Y TL+++ +E+ +++E+VR++ Sbjct: 425 QELAVILNEMINSSLDPEDQALIRKRYGVGQDPSGVPYRPHTLDELAKELNISKEKVRKL 484 Query: 306 QVEGLRRLREILQTQGLN 323 + + LR+L+ + + L Sbjct: 485 EAKILRKLKHPQKRKKLK 502 >UniRef50_B4U904 RNA polymerase sigma factor n=5 Tax=Aquificales RepID=B4U904_HYDS0 Length = 311 Score = 291 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 89/305 (29%), Positives = 160/305 (52%), Gaps = 32/305 (10%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG 110 + + Y+ + LLT +EE FA+RA GD + + ++E+NLR VV +A++Y Sbjct: 3 SDSEQEIINQYMKRVSSVKLLTPQEEKEFAKRAKAGDKEALKALVEANLRFVVSVAKQYM 62 Query: 111 NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH 170 G+ L +LI GNLGL+ A +FDP++ +F +YA WW+RQ I +A+ QT +R+P+ Sbjct: 63 GYGIPLSELIAAGNLGLLEAATRFDPDKNVKFISYAVWWVRQAIMQALSQQTGAVRIPVK 122 Query: 171 IVKELNVYLRTARELSHKLDHEPSAEEIAEQLD--------------------------- 203 ++ EL +L+ EP+ +EIA+ ++ Sbjct: 123 HSHLISAVGLAYNELLKELEREPTYKEIADYINKKNIIREFKKETGFAPTEEELEQSMTQ 182 Query: 204 -----KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQS 258 +DV + L++ + S+DTP+G + + +D+L+ + E+ D +++ Sbjct: 183 EHKYTVTEEDVKKCLQICKTPLSLDTPVGDNPDTLFVDLLSISDTDEIEEGVIKDVLEKE 242 Query: 259 IVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318 + + +L K+R+VL R+GL G E TL ++G +G++RERVRQ++ +++LR Sbjct: 243 LHDIISKLPEKERKVLELRYGLNGNEPLTLREIGDALGISRERVRQLETRAIKKLRSFAL 302 Query: 319 TQGLN 323 + L Sbjct: 303 KRHLK 307 >UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderia cepacia complex RepID=A4JT57_BURVG Length = 628 Score = 291 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 93/233 (39%), Positives = 138/233 (59%) Query: 83 ALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 142 R +R + ++NLRLVV IA+RY +RGL DLI+EGN+GL++A++++D RGFRF Sbjct: 384 IERAMQPARMGLFDANLRLVVSIAKRYPDRGLPFADLIQEGNIGLLKAIDRYDHRRGFRF 443 Query: 143 STYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL 202 STYATWWIRQ I A+ + RTIR+P H V +N R ARE + + E+A Q+ Sbjct: 444 STYATWWIRQAITHALADLGRTIRVPTHTVDAINKLTRIAREHRQRSGAAATPHELAVQM 503 Query: 203 DKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKW 262 +P+D V ++ + + S D P+ + E +D+ D PED ++ +I Sbjct: 504 GEPLDKVRDLMSIVKEPMSADAPVSPEGEMTFVDVAPDVSTPSPEDAAGAAQLRDTIAAM 563 Query: 263 LFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 + L A++ VL R+GL E +L D+GR++ L+ ERVRQI+ L RLR Sbjct: 564 IGRLPAREATVLRLRYGLHADEGCSLRDIGRQLNLSAERVRQIEASALARLRA 616 Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 10/53 (18%) Query: 53 RVLDATQLYLGEIGYSPLLTAEEEVYFARRALR----------GDVASRRRMI 95 R D +LYL E+G +PLLT +EE+ A+R R GD + ++ Sbjct: 116 RTTDPVRLYLREMGMTPLLTRDEEIMHAQRIERGRAASVAVLCGDPQALDALV 168 >UniRef50_B5ES65 RNA polymerase sigma factor n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ES65_ACIF5 Length = 316 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 139/316 (43%), Positives = 200/316 (63%), Gaps = 7/316 (2%) Query: 11 LNEDAEFD-----ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEI 65 L EDA+ D E EV ++A + E + D + GA+ DA +LYL EI Sbjct: 2 LTEDADGDVPDALEEIAEVGQDEACLWPETPEFDAIADPAWEAGASDH-FDAIKLYLQEI 60 Query: 66 GYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG-LALLDLIEEGN 124 G++PLLTAEEEV A +GD+ +R R++E NLRLVV+IARRY + L LLDLIEEGN Sbjct: 61 GHNPLLTAEEEVSLGLSAQQGDITARNRLVECNLRLVVRIARRYQRQHTLPLLDLIEEGN 120 Query: 125 LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARE 184 LGLIRA E FDP RGFRFSTYATWWIRQ I+R IM Q+R +RLP HI+K L+ LR++R+ Sbjct: 121 LGLIRAAELFDPTRGFRFSTYATWWIRQNIDRGIMQQSRVVRLPTHIIKNLSAVLRSSRQ 180 Query: 185 LSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKEN 244 ++ + +P E++A+ + K V V L+ + R+ S+D P + +L L D + Sbjct: 181 IAQTMQGDPRVEDVAQVMGKSVAYVEDCLQQDRRVVSLDAPSRWEGSPSLAQTLVDADQA 240 Query: 245 GPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQ 304 + ++ D+++ I + L L+ + R +L RRFG+ G + A+L +G+E+G++ ERVRQ Sbjct: 241 DLGASLEEQDLQRQIHRALLGLDVRHRTILIRRFGIDGQDGASLSAIGKELGVSHERVRQ 300 Query: 305 IQVEGLRRLREILQTQ 320 +Q E L LR+ + Q Sbjct: 301 LQEEALDLLRQHTELQ 316 >UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESS1_SORC5 Length = 715 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 91/320 (28%), Positives = 160/320 (50%), Gaps = 16/320 (5%) Query: 1 MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQL 60 +S+ L + + E + D+ EE + + + Sbjct: 410 LSEELAAAVRLPDSDRLWMARAFGIARDLVREPDFEDDVSDPEETRPTRPRLPMSGSYRR 469 Query: 61 YLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 YL + S + ++ R +++NLRLVV IARRY L L+DLI Sbjct: 470 YLDRVERS---------------FQAQHDAKNRFVKANLRLVVSIARRYNRGRLPLIDLI 514 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLR 180 +EGN+GL++AVE+FD RG+RFSTYA+WWIR I RA+ ++ R +R+P+H++ N R Sbjct: 515 QEGNIGLMKAVERFDHSRGYRFSTYASWWIRHAISRALADKGRAVRIPVHMLDTYNRVAR 574 Query: 181 TARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRL-NERITSVDTPLGGDSEKALLDILA 239 + + + HEP+ EE+ ++ P + + ++ E S+D P+G + + +D L Sbjct: 575 ATQAIIARTGHEPTIEELEKETGVPREKLDKVKDFYAETPFSLDRPVGDEDGRKFIDFLQ 634 Query: 240 DEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTR 299 +E P D + + + L L + ++ RFGL + TL+++G + L+R Sbjct: 635 EENALSPFDHLANRKWSDEVRRLLTTLTPIESRIIRWRFGLDDEDELTLKEIGDKYNLSR 694 Query: 300 ERVRQIQVEGLRRLREILQT 319 ER+RQ+Q + L ++R+ ++ Sbjct: 695 ERIRQLQEQALGKIRKQMRD 714 >UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular organisms RepID=RPSB_ANASP Length = 332 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 163/310 (52%), Gaps = 41/310 (13%) Query: 47 SQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALR--------------------- 85 DA +YL +IG PLL+ E+E++FA++ + Sbjct: 14 KNNEFSYTADAVSIYLHKIGRVPLLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTL 73 Query: 86 -------------------GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLG 126 ++++MI++NLRLVV IA++Y R L LDLI+EG LG Sbjct: 74 QEWADKMQLKEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALG 133 Query: 127 LIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELS 186 L R VEKFDP G++FSTYA WWIRQ I RAI Q+RTIRLPIH+ +LN RELS Sbjct: 134 LERGVEKFDPTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELS 193 Query: 187 HKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGP 246 KL + EIA+ L+ + L+L + S+D +G + + L D+L D+ P Sbjct: 194 QKLGYIAGVTEIAQALNLEPSQIREYLQLVRQPVSLDMRIGFEQDTQLQDLLKDDGM-SP 252 Query: 247 EDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQ 306 E + + + Q I L +L +Q+EVL RFGL G TL + + +G++RERVRQ++ Sbjct: 253 ERYAERELLYQDIHNLLAKLTPQQKEVLILRFGLAGGCELTLVQISQRMGISRERVRQVE 312 Query: 307 VEGLRRLREI 316 + L LR Sbjct: 313 KQALTLLRRY 322 >UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, scaffold_24.assembly12x (Fragment) n=3 Tax=Magnoliophyta RepID=D1J322_VITVI Length = 575 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 141/243 (58%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 RR + + +MI+SN+RLV+ IA+ Y G+ + DL++EG GL+R EKFD +G Sbjct: 327 LRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKG 386 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 F+FSTYA WWI+Q + +++ +Q+RTIRLP H+V+ ++L + P+ EE+A Sbjct: 387 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 446 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 E + ++ +L + S+D +G + +++AD E+ M++ + Sbjct: 447 EATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDL 506 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 K L LN ++++V+ R+GL TL+++G +G++RER+RQI+ R+L+ +T Sbjct: 507 EKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRT 566 Query: 320 QGL 322 + L Sbjct: 567 KHL 569 >UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1P1_HERA2 Length = 303 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 153/302 (50%), Gaps = 27/302 (8%) Query: 45 LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVA--------------- 89 +L + D Q YL EI +PLL AEEE + A Sbjct: 2 MLHASNEPALDDGLQRYLNEIAETPLLAAEEEQKLTQIVHVARQAQPTPACRIERCPSCA 61 Query: 90 ------------SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137 + +++ +NLRLVV IA+RY GL DLI+EGN+GL+ A+E+FD Sbjct: 62 LFEQCVTKLKEPAHEQLVRANLRLVVSIAKRYRGFGLPFQDLIQEGNIGLMNAIERFDAT 121 Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197 +G RFSTYATWWIRQ I R++ NQ R IRLP+H + L R +L L EPSA E Sbjct: 122 KGVRFSTYATWWIRQAITRSLANQGRLIRLPVHRWELLIKVRRIETKLLQALGREPSANE 181 Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257 I+ L P + + +L + + S+ TP +++ L D L DE + Q Sbjct: 182 ISTALGVPEEKICDLLSIAQVPISLATPKNEETDMLLGDSLPDEDWEDELECLLTSIDAQ 241 Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 L +L+ +++EVL R+GL ++ +L +VG +G TR+R++QI+ L+ LR L Sbjct: 242 YTRAMLNQLSEQEQEVLTLRYGLKDGKSRSLSEVGAVVGRTRQRIQQIEAGALQVLRTQL 301 Query: 318 QT 319 Sbjct: 302 SQ 303 >UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece RepID=B7KCK0_CYAP7 Length = 295 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 110/287 (38%), Positives = 173/287 (60%), Gaps = 23/287 (8%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVYFA-------------------RRALRGDVASR 91 LD + YL EIG PLL +EEEV A ++ + ++ Sbjct: 2 ATAKLDPVRSYLQEIGRIPLLNSEEEVQLATKVQNMLPLLEKENLTAAEKKIVEQGQIAK 61 Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 151 R+MI++NLRLVV IA+RY RGL+LLDLI+EG+LGLIRAVEKFDP +G++FSTYA WW+R Sbjct: 62 RKMIQANLRLVVSIAKRYQRRGLSLLDLIQEGSLGLIRAVEKFDPSKGYKFSTYAYWWVR 121 Query: 152 QTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSR 211 Q I RA+ ++RTIRLPIH+ + LN ++ REL+ +L +P+ +E+A++++ PV+ + Sbjct: 122 QAITRALAEKSRTIRLPIHMTENLNQLKKSVRELTGELGRKPNEQEVAQRMEIPVEKLRE 181 Query: 212 MLRLNERIT--SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 + R S++ L D++ L ++L DE P + ++ I L +L + Sbjct: 182 IRHAVYRTDAKSLNITL-DDNQTELGEVLPDETSL-PIEFVSQWELVTKINDLLEDLPPR 239 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 QRE++ RFGL + + +++GR+ G++ ER RQ+ +R L++ Sbjct: 240 QREIITLRFGLQTGKRMSYKEIGRQCGISHERARQLLNRAMRTLKQK 286 >UniRef50_A8ZPW9 RNA polymerase sigma-70 factor, putative n=10 Tax=Acaryochloris marina MBIC11017 RepID=A8ZPW9_ACAM1 Length = 274 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 97/260 (37%), Positives = 166/260 (63%), Gaps = 2/260 (0%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLA 115 D+ YL EI P+L+ EEE+ AR+ G++ +++R+IE NLRLVV IA+++ NRGL Sbjct: 6 DSLHFYLKEIARYPILSHEEEILLARQVNAGNLRAKQRLIECNLRLVVSIAKKHQNRGLP 65 Query: 116 LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKEL 175 L DLI+EG++GL AV+KFD +G RFSTYA WWIRQ + A+ ++R I LP + + + Sbjct: 66 LQDLIQEGSIGLSNAVDKFDLAQGCRFSTYAYWWIRQGVTAALRAKSRPIYLPQYQWEMI 125 Query: 176 NVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALL 235 + + REL+ +L EPS E+A+ + +SR L L ++++S+D P+G + LL Sbjct: 126 SKIKKHFRELNQQLGREPSLSELAKATNLKPKTISRTLHLFQKVSSLDQPVGHQQKDTLL 185 Query: 236 DILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREI 295 D++A E P + + + + + + L+ +++ VL++RFGL + ++ ++G +I Sbjct: 186 DLMAGED--QPTLYLESLQLDEQLSQVMAHLDKREQFVLSQRFGLEDDQPKSMREIGEQI 243 Query: 296 GLTRERVRQIQVEGLRRLRE 315 GL+RE +R I + +++L++ Sbjct: 244 GLSREGIRLILNKIMKKLQK 263 >UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteria RepID=B8HRG7_CYAP4 Length = 455 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 107/243 (44%), Positives = 160/243 (65%), Gaps = 1/243 (0%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 + + V ++ MI++NLRLVV +A++Y NRGL LLDLI+EG LGL RAVEKFDP +G Sbjct: 206 LDQIQKEGVRAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKG 265 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 +RFSTYA WWIRQ I RAI Q+RTIRLP+HI ++LN + R++S + H PS E+IA Sbjct: 266 YRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTPSIEDIA 325 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 +L+ V V +L R S++T +G D + L D+L + PE+ + + + + Sbjct: 326 TELEMTVPQVRELLVRVPRSVSLETKVGKDKDTELGDLLETDD-LSPEEMMMRESLHREL 384 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 K L +L +++R+V++ RFGL A +L D+GR + L+RERVRQI+ + L++LR+ + Sbjct: 385 EKLLADLTSRERDVISMRFGLGDGHAYSLADIGRALDLSRERVRQIEAKALQKLRQPKRR 444 Query: 320 QGL 322 + Sbjct: 445 NRV 447 Score = 42.4 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 18/103 (17%) Query: 4 NTLKVHDLNEDAEFD----ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQ 59 + L E E D NG+E + +L+E P ++ EE + G QR D + Sbjct: 46 EEDSLETLAEPGELDLLVEANGLEANGDGSLLEDWPEED--VEEAVQLAGRGQRTTDLVR 103 Query: 60 LYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV 102 LYL EIG LL +EEV A++ R +RLV Sbjct: 104 LYLQEIGRVRLLGRDEEVSEAQKVQR------------YMRLV 134 >UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D27_DECAR Length = 309 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 155/295 (52%), Positives = 202/295 (68%) Query: 34 EPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRR 93 +P + L E + + D TQLYL EIG PLLT EE+ +R GD ++R+R Sbjct: 15 QPDETVLPPEPERVLPEIELLEDVTQLYLSEIGAKPLLTPAEELATSRLVREGDFSARQR 74 Query: 94 MIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 153 MIE NLRLVV IA+ Y NRG+ LLDLIEEGNLGLI A+EKFDPERGFRFSTYATWWIRQ Sbjct: 75 MIEHNLRLVVNIAKHYLNRGIPLLDLIEEGNLGLIHALEKFDPERGFRFSTYATWWIRQN 134 Query: 154 IERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRML 213 IER IMNQ+RTIRLP+HIVKE+NV LR R L + + E IA +D+PV DV R+L Sbjct: 135 IERGIMNQSRTIRLPVHIVKEINVVLRAMRHLESADKRDSTVERIALLIDRPVADVRRIL 194 Query: 214 RLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREV 273 LNE I S+D PL D + +++AD+ E+ PE Q ++ + WL +L +QR V Sbjct: 195 SLNEHIASLDAPLEIDPNHTMAEVIADDGESDPESLLQSSEVGSLVDDWLEQLTERQRSV 254 Query: 274 LARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALF 328 + RR+GL G + ATL+ + ++GLTRERVRQIQ+EGL RLR+I++ ++ ++L Sbjct: 255 IERRYGLSGADLATLDVIACDLGLTRERVRQIQMEGLDRLRKIIKRGNISRDSLL 309 >UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis RepID=B9S0J0_RICCO Length = 548 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 93/311 (29%), Positives = 156/311 (50%), Gaps = 40/311 (12%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRAL------------------------------- 84 D +L+L LLTA+EE + Sbjct: 234 DPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTLVEWADAVGL 293 Query: 85 ---------RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 SR ++I +NLR+VV IA++Y RGL+L DL++EG++GL++++EKF Sbjct: 294 SYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFK 353 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 P+ G RF+TYA WWIRQT+ +AI +RTIRLP ++ L R + +H P+ Sbjct: 354 PQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIMEGNHNPTK 413 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 EE+A+++ + R+L + S+ + D E +I AD + PE M Sbjct: 414 EELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEITADIEVEIPELCVAKQLM 473 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 ++ ++ L LN ++R+++ R+G+ + +L ++G GL++ERVRQ++ L +L++ Sbjct: 474 RKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQ 533 Query: 316 ILQTQGLNIEA 326 L + GL A Sbjct: 534 CLASHGLEAYA 544 >UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WQH6_CYAA5 Length = 297 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 115/292 (39%), Positives = 167/292 (57%), Gaps = 22/292 (7%) Query: 49 GATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALR-------------------GDVA 89 T++ +D + YL IG +PLL+ EE+ A Sbjct: 1 MPTKKKVDTVRHYLQSIGKTPLLSGPEEIKLAEEIQAMLPLLEKEALSKEEEKIVAKGQR 60 Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +R +MI++NLRLVV IA++Y N GL+LLDLI+EG+LGLIR VEKFDP RG++FSTYA WW Sbjct: 61 ARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPSRGYKFSTYAYWW 120 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IRQ I RAI Q+RTIRLPIHI + LN Y ++ REL+ KL +P+ +EIAE +D VD + Sbjct: 121 IRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQQEIAENMDISVDKL 180 Query: 210 SRMLRLNERI--TSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 + + + S++ + ++ L +L DE P D + + I + L L+ Sbjct: 181 RFLQQAAFKTKSRSLNIVI-DENHTELGQLLPDEDSVSPSDFVKQQEKISQINRMLENLS 239 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 +Q+EV+ RFGL + + + +G + G++ ER RQI LR LR+ Sbjct: 240 PRQKEVIILRFGLRDGKQLSYKAIGEQCGISHERARQIYSRALRILRKQSSK 291 >UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobacteria RepID=RPSC_ANASP Length = 416 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 98/244 (40%), Positives = 153/244 (62%), Gaps = 1/244 (0%) Query: 77 VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 V + + S+ MI++NLRLVV +A++Y NRGL LLDL++EG LGL RAVEKFDP Sbjct: 164 VEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDP 223 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 +G+RFSTYA WWIRQ I RAI +RTIRLP+HI ++LN + R+++ + P+ E Sbjct: 224 TKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLE 283 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256 ++A +LD V +L R S++T +G D + L ++L PE+ + ++ Sbjct: 284 DLAIELDMTPTQVREVLLRVPRSVSLETKVGKDKDTELGELLE-TDGVTPEEMLMRESLQ 342 Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 + + L +L +++R+V+ RFGL +L ++GR + L+RERVRQI+ + L++LR+ Sbjct: 343 RDLQHLLADLTSRERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQP 402 Query: 317 LQTQ 320 + Sbjct: 403 KRRN 406 Score = 42.4 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 9/88 (10%) Query: 11 LNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPL 70 L+ D D++ + V E + + A+ A +R D +LYL EIG L Sbjct: 21 LDPDIAIDDSDLSV------DEIQELEIAAADPATFGASANRRSTDLVRLYLQEIGRVRL 74 Query: 71 LTAEEEVYFARRALRGDVASRRRMIESN 98 L +EEV A++ R + R++ +N Sbjct: 75 LGRDEEVSEAQKVQR---YLKLRIVLAN 99 >UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKA7_9BACT Length = 301 Score = 286 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 146/278 (52%), Gaps = 1/278 (0%) Query: 45 LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVK 104 + + YL I +T +E R GD + +I NL+ VV Sbjct: 20 TAKVMPAPVSETSLKHYLNSISAYKPMTKAQEFAIGERIQAGDEDALNTLILCNLKFVVS 79 Query: 105 IARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRT 164 IA RY N GL + D+I +GNLGL+ A ++FD + +F +YA WWIRQ+I +A+ Q+ T Sbjct: 80 IANRYRNTGLPIADIINQGNLGLVEAAKRFDHTKDVKFISYAVWWIRQSIIQALAEQSGT 139 Query: 165 IRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDT 224 ++LPI L +L+ KL+ EP+A E+AEQL+ D+ +LR++ S++ Sbjct: 140 VKLPIKQAGILYKINGATEKLNKKLNREPTASELAEQLEMDEADIENVLRVSRNYLSLEA 199 Query: 225 PLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYE 284 P+ +++ +D+L E+ +K ++ + EL+ ++ +++ RFGL Sbjct: 200 PIKDGEDRSFIDLLE-SGTKDIEEDIISKTLKTALDDIVDELDERESQIIEWRFGLNEEA 258 Query: 285 AATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 TLE++G + ++RERVRQ++ L +LR+ L Sbjct: 259 PKTLEEIGELMDISRERVRQLETRALSKLRKKAMKNKL 296 >UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma mobile RepID=Q6KI01_MYCMO Length = 488 Score = 286 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 96/327 (29%), Positives = 181/327 (55%), Gaps = 16/327 (4%) Query: 13 EDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVL-DATQLYLGEIGYS-PL 70 ++ DE ++ DE +E + A+ ++ G + V+ + + Y+ +G + Sbjct: 155 DEISDDEIVLDDLDEFIDLEYSANAKKGAKSKVKKSGNREIVIREIVKWYMSWVGKHGKV 214 Query: 71 LTAEEEVYFARRAL-----RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNL 125 L EEE+ ++++ R + +I NLRLV+ A++Y NRGL+ +DLI EGN Sbjct: 215 LDKEEEIKYSKQIEEDRNGRKGKKAFNALIHHNLRLVINNAKKYKNRGLSFIDLISEGNA 274 Query: 126 GLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAREL 185 GLI+A K+D RGF+FSTYATWW+RQ I RA+ +Q R +R+P+H+V+ +N ++ REL Sbjct: 275 GLIKAATKYDYRRGFKFSTYATWWVRQAITRAVADQARIVRVPVHMVETINKIIKIEREL 334 Query: 186 SHKLDHEPSAEEIAEQLD--KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKE 243 +L P+ ++IAE+ + V + ++N S+D +G D + + D + DE Sbjct: 335 HQELGVPPTDKQIAEKYGNNFTAEKVQYIRKINIDPISLDKSIGKDDDSSFSDFVKDESV 394 Query: 244 NGPEDTTQDDDMKQSIVKWLFE-LNAKQREVLARRFGLLGYEA------ATLEDVGREIG 296 P + +++ + L + L+ +R+++ +RFG+ + +LE++ E+ Sbjct: 395 VSPLEFASQNELSGILTDILEKHLDEAERDLIKKRFGIGVDKDGNRISSHSLEELAAELQ 454 Query: 297 LTRERVRQIQVEGLRRLREILQTQGLN 323 +++E+VR ++ + LR+L+ + + L Sbjct: 455 ISKEKVRSLESKILRKLKHPQKRKKLK 481 >UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID=O22455_ARATH Length = 574 Score = 286 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 140/248 (56%), Gaps = 1/248 (0%) Query: 75 EEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 ++ +R G + + +MI+SN+RLV+ IA+ Y G+ L DL++EG GL+R EKF Sbjct: 320 DQKSLRQRIHHGTL-CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 378 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D +GF+FSTYA WWI+Q + +++ +Q+R IRLP H+V+ ++L + P Sbjct: 379 DATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPK 438 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 EEIAE + + +L + S+D +G + +++AD + ED + Sbjct: 439 NEEIAEATGLSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEF 498 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 M+Q + K L L ++++V+ RFG+ TL+++G +G++RERVRQI+ R+L+ Sbjct: 499 MRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLK 558 Query: 315 EILQTQGL 322 + L Sbjct: 559 NKKRNNHL 566 >UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroidetes/Chlorobi group RepID=Q2S172_SALRD Length = 313 Score = 286 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 105/271 (38%), Positives = 160/271 (59%) Query: 52 QRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGN 111 R YL EIG LL EEEV ARR GD + ++ +NLR VV +A++Y Sbjct: 38 SREQRMLDQYLQEIGKIDLLEPEEEVELARRIEDGDEEALHKLCRANLRFVVSVAKKYQG 97 Query: 112 RGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI 171 +GL+L DLI EGN GLI+A ++FD RGF+F +YA WWIRQ I +A+ Q+R +RLP++ Sbjct: 98 QGLSLADLINEGNYGLIKAAKRFDETRGFKFISYAVWWIRQAILQALAEQSRVVRLPLNR 157 Query: 172 VKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSE 231 + ++ + + L LD +P+ EE+AE+L+ V V ++ R S+D P + + Sbjct: 158 IGTISKIRKASARLQQDLDRKPNIEELAEELEIDVQKVREAMKHTSRHLSMDAPFNEEDD 217 Query: 232 KALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDV 291 +LLD+L DE + P++ + +K I + L L+ ++ E+ FG+ TLE++ Sbjct: 218 NSLLDVLPDEDNDSPDEEMLSESVKIDIERALSALHDREAEITRLYFGIGREHPLTLEEI 277 Query: 292 GREIGLTRERVRQIQVEGLRRLREILQTQGL 322 G+ LTRERVRQI+ + LR+LR+ Q L Sbjct: 278 GKRFDLTRERVRQIKEKALRKLRQRHSKQDL 308 >UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria RepID=A1S281_SHEAM Length = 969 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 107/322 (33%), Positives = 160/322 (49%), Gaps = 19/322 (5%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLY-L 62 + E E ++ E L E + + A L +Q LY L Sbjct: 657 PRKTAESVAEQKMGRELISQLKTEYPLCEDKLERHAGAINRLQAQMQNINQKTGIDLYSL 716 Query: 63 GEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEE 122 +IG ++ R A+R MI NLRLV+ +A +Y RGL L DL++E Sbjct: 717 QDIGSK-----------IKKLQRDISAARDEMITFNLRLVLSVANKYLGRGLELADLVQE 765 Query: 123 GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTA 182 GN+GL++AVEKFD +GF+FSTYATWWIRQ I RAI +Q R IR+P+H+ + LN + + Sbjct: 766 GNIGLMKAVEKFDHRKGFKFSTYATWWIRQAITRAIADQARIIRIPVHVNESLNKLISAS 825 Query: 183 RELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEK 242 + L+HK P E++ L P V + ++ P+ + D Sbjct: 826 KVLTHKFGRGPKISELSLILSMPETKVENLKQILVM-----EPVAEADHNTNGYV--DWA 878 Query: 243 ENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERV 302 PE+ DDD +I L L K+++VL RFG+ TLE+VG++ +TRER+ Sbjct: 879 AMSPEEEIIDDDRDTNIKDLLKGLTDKEKKVLELRFGINAATELTLEEVGQQFDVTRERI 938 Query: 303 RQIQVEGLRRLREILQTQGLNI 324 RQI+ + L++L ++ L I Sbjct: 939 RQIEAKSLKKLAHTSRSSHLAI 960 >UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily n=8 Tax=Planctomycetaceae RepID=D2R4L7_9PLAN Length = 320 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 106/282 (37%), Positives = 167/282 (59%) Query: 38 NDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIES 97 + + ++ + + YL EI + LL+A +E A GDV +R RM+ + Sbjct: 23 STSGKARGVAPRKAISLQTPLESYLREINETALLSARDERELAAAIADGDVRARDRMVRA 82 Query: 98 NLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERA 157 NLRLVV IAR Y +GL+L DLIEEGNLGL+RAVE FDP G RFSTYA++WI+Q+I+RA Sbjct: 83 NLRLVVNIARGYTGKGLSLQDLIEEGNLGLLRAVEGFDPAVGTRFSTYASYWIKQSIKRA 142 Query: 158 IMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNE 217 ++N +TIR+P ++V+ L+ + R L+ +L P+ EE+A L + + + Sbjct: 143 LINSAKTIRIPAYMVELLSKWRRATARLTEELGRGPTPEEVARVLGLAKKKLPIIKKAIR 202 Query: 218 RITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARR 277 S ++ +L +I+ DE+ PED + D+ + +++ L +++++ VL R Sbjct: 203 IYNSTPQTDQSEAGWSLGEIVMDERLKNPEDELVEQDVLKHVMEMLHTMDSREATVLRMR 262 Query: 278 FGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 FGL TL+++G +GLTRERVRQI+ E L +L + L+ Sbjct: 263 FGLGDTTPHTLKEIGESLGLTRERVRQIETEALGKLADGLKD 304 >UniRef50_Q21UR2 RNA polymerase sigma factor n=5 Tax=Burkholderiales RepID=Q21UR2_RHOFD Length = 350 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 126/296 (42%), Positives = 175/296 (59%), Gaps = 7/296 (2%) Query: 40 LAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNL 99 L L + A DA +YL ++ + L T +EE A RA GD A+R+ MIE NL Sbjct: 55 LPGAGLEALDAAGESGDALTVYLRQVRRTTLFTPQEEFELAGRARAGDFAARQSMIEHNL 114 Query: 100 RLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM 159 RLVV IA+ Y RG+ LLDLIEEGNLGL+ A++KF+PERGFRFSTYATWWIRQ+++RA+M Sbjct: 115 RLVVSIAKAYMGRGVPLLDLIEEGNLGLMHAIDKFEPERGFRFSTYATWWIRQSVDRALM 174 Query: 160 NQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS------AEEIAEQLDKPVDDVSRML 213 Q R +RLP+++V+EL LR R L S E++A L + V+ +L Sbjct: 175 CQGRVVRLPVNVVRELQQVLRARRALESDAAFVVSRPDGIRVEDVAALLGRDPVHVADLL 234 Query: 214 RLNERITSVDTPLGGDSEK-ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQRE 272 L E S+D L E D L DE P TQ ++++ + +W+ L+ +++E Sbjct: 235 GLAEAPRSLDAALDRSGETQTFGDSLVDEITADPSGVTQVHEVERLLEEWVGTLSEREKE 294 Query: 273 VLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALF 328 VL RFGL E TL+ + + LTRERVRQ+Q E L +L+ L +G+ +AL Sbjct: 295 VLEGRFGLHDREPETLDVLSARLDLTRERVRQVQNEALAKLKRYLAHRGITRDALI 350 >UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD77_THET1 Length = 596 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 163/317 (51%), Gaps = 2/317 (0%) Query: 5 TLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGE 64 +V E ++ D ++ E +S+ + + + Sbjct: 171 ESRVEQTTEQSDEDSESKGIYSEIDWAIVRLHILQELAPADISEKIVRTSYRPFD-FTSD 229 Query: 65 IGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGN 124 + + + + +R+R+IE+NLRLVV IA++Y RG+ LLDLI+EGN Sbjct: 230 LIKHFGANQADIQDKITKWIAEGDIARKRLIEANLRLVVSIAKKYTGRGITLLDLIQEGN 289 Query: 125 LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARE 184 +GLI+AVEKF ++G++FSTYATWWIRQ I RAI +Q RTIR+P+H+ + +N + R Sbjct: 290 IGLIKAVEKFRHQKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMGEAINKIAQARRR 349 Query: 185 LSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKEN 244 L+ +L EP+ +EIA L PV+ + + ++++ S++ P+G + + +L D + D K Sbjct: 350 LTQELGREPTEQEIANYLGIPVEKIREVQKISQEPISLENPVGEEEDTSLGDFIQDHKAP 409 Query: 245 GPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQ 304 P D ++ I + L L+ ++R VL RFGL E +V + ++ +V Q Sbjct: 410 APMDAASQSLLRDQIDQVLKHLSERERGVLLMRFGLDC-EPRPYREVAHILAVSPNQVMQ 468 Query: 305 IQVEGLRRLREILQTQG 321 + L + L + Sbjct: 469 AESRVLDMVAARLSPED 485 Score = 85.9 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 17/150 (11%) Query: 189 LDHEPSA-EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD-EKENGP 246 LD EP E+A L + V + + + L + + LLD ++ Sbjct: 445 LDCEPRPYREVAHILAVSPNQVMQAESRVLDMVA--ARLSPEDYQMLLDRFGHLDRSPMS 502 Query: 247 EDTT-------------QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 E++ D +++++ + + A +R+++ RFGL + TLE+VGR Sbjct: 503 EESFRLKYKLTQTQLREIDQKLREALASVMLHVPAPERDMMRFRFGLDIGQPRTLEEVGR 562 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQGLN 323 G+TRER+RQI+ + LR+LR + + L Sbjct: 563 AFGVTRERIRQIESKALRKLRRDVFRRQLE 592 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 31/68 (45%) Query: 20 NGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYF 79 ++ + A + L + E L + D +LYL EIG LL+ E+E+ Sbjct: 37 MRMKNQENDADYVDLEIEESLQDPEDLEDLEGTNLDDPIRLYLREIGKENLLSQEQEIEL 96 Query: 80 ARRALRGD 87 AR+ RG+ Sbjct: 97 ARKNERGN 104 >UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GEJ9_PHATR Length = 329 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 106/325 (32%), Positives = 162/325 (49%), Gaps = 56/325 (17%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRAL------------------------------- 84 D+ + Y+ + LL EE+ R Sbjct: 1 DSIRSYIKTMCNHELLNKNEEIILGREVQVLIQYEATREQLEAELLRPPTYQEWATKIQP 60 Query: 85 -----------RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133 R + ++ + ESN+RLVV IA+RY +RGL+ DL +EG LGL RA EK Sbjct: 61 DMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQEGILGLTRACEK 120 Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193 FDPERGFRFSTYA+WWI+Q+I RAI +Q RTIRLP+HI ++N + REL +L + Sbjct: 121 FDPERGFRFSTYASWWIKQSIMRAIADQGRTIRLPVHIHDQINALRKVERELKAELGRDA 180 Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL-------------GGDSEKALLDILAD 240 EEI E+ + + + R++++ S++ L G D L D++ D Sbjct: 181 RLEEITEKSTLTAEKIEFLNRVSQQDVSMEQELRTSKSKGSSAGLGGPDGGLTLGDVMGD 240 Query: 241 EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE 300 + P + +K I + + LN++++ V+ RFGL +A TLE++GR +TRE Sbjct: 241 PEA-QPAEEASYQMLKDDISRLICTLNSREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRE 299 Query: 301 RVRQIQVEGLRRLREILQTQGLNIE 325 R+RQI+ L +LR+ + + Sbjct: 300 RIRQIESRALHKLRQPYRNHAVKCY 324 >UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLA1_SYNFM Length = 433 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 98/244 (40%), Positives = 158/244 (64%), Gaps = 1/244 (0%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 +R + ++++ M+++NLRLV+ IA+RY RG++ DLI+EGNLGL++AV +FD +G Sbjct: 187 SRAIMLAIDSAKQEMVKANLRLVLSIAKRYRGRGMSFDDLIQEGNLGLLKAVGRFDHTKG 246 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 RFSTYATWW+RQ+I R I ++TRTIRLP+H ++ N++ + EL +L EPS +EIA Sbjct: 247 NRFSTYATWWVRQSIIRGIYDKTRTIRLPVHFIELKNLFFKVFYELLKELGREPSPQEIA 306 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 E+ P+D V +L L + S++TP+G D ++ L D + DE+ P + D ++ + Sbjct: 307 ERAKLPLDKVQMVLTLAAQPISLETPIGEDEQR-LGDFIEDERAASPMEECSDRELAEIT 365 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 L L ++ ++L RFG+ G A TLE +G+ +++ER+RQI+ + LR+LR + Sbjct: 366 RSLLSSLQPREEKILRLRFGIDGQPAETLEKIGKTFKVSKERIRQIEKKALRKLRNPNRQ 425 Query: 320 QGLN 323 L Sbjct: 426 SCLK 429 Score = 42.8 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 31/86 (36%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLG 63 LK +L + + D G E D + +++ E ++ D YL Sbjct: 35 ERLKRANLGLEEDRDMEGPEAEDILEAAAEREEEDEDLLPEGVTAAGEDFEEDHVTCYLK 94 Query: 64 EIGYSPLLTAEEEVYFARRALRGDVA 89 E+ PLLT E E A+ G Sbjct: 95 EVSSYPLLTQERETELAQVIREGQEE 120 >UniRef50_B1ZRN1 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZRN1_OPITP Length = 347 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 105/278 (37%), Positives = 151/278 (54%), Gaps = 1/278 (0%) Query: 40 LAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNL 99 L+ A + Q+YL +IG +PLLTA EE A R RGD +R MI +NL Sbjct: 17 LSRRSSARDAAESDGRSSLQIYLQDIGQTPLLTAREEFALAERVRRGDAGARDHMIRANL 76 Query: 100 RLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM 159 RLVV+IA+ Y GL L DLI EGN+GLI AV++FDP G + STYA WWIRQ I RA Sbjct: 77 RLVVRIAKDYAQYGLPLADLISEGNVGLIHAVDRFDPRIGGKLSTYAAWWIRQAIRRAFA 136 Query: 160 NQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERI 219 + R IRLP+H++ + R LS + E + +E+A +L PV+ ++ + Sbjct: 137 HHARAIRLPVHMLDRIARLRRAQASLSEQFGREATTDELAAELQAPVEKIALWKSAGDAP 196 Query: 220 TSVDTPLG-GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRF 278 S+D +G G + L + + DE+ +D + + + L+ ++ +L RF Sbjct: 197 FSLDAAVGTGSESRRLSETIRDERAPTAFTQLRDATTARDLRAIIATLDVREATILRLRF 256 Query: 279 GLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 GL G E TL V G+TRERVRQ++ L+ +R Sbjct: 257 GLDGDEPQTLHAVSLRFGITRERVRQLERRALQNVRNA 294 >UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HIZ1_ARTCA Length = 951 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 151/305 (49%), Gaps = 33/305 (10%) Query: 34 EPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG------- 86 E D+D +E +L + D +LYL + LLT EE G Sbjct: 449 ERDDSDWSEAPVL----EGSIGDDVRLYLEQASSFDLLTHEEVTDLGMAIEAGLYAEHLL 504 Query: 87 --------------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLG 126 + +++ NLRLVV IA+R+ RG+ LDLI+EGN G Sbjct: 505 GTARPEGRRAILELESVASAGRDAVLKLVSCNLRLVVSIAKRHTGRGMDFLDLIQEGNAG 564 Query: 127 LIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELS 186 L RAV+KFD +GF+FSTYATWWIRQ I R I +Q+RTIRLP+H +++ R Sbjct: 565 LYRAVQKFDYTKGFKFSTYATWWIRQAITRGIADQSRTIRLPVHFHEQVVSVFIAERNFL 624 Query: 187 HKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVD--TPLGGDSEKALLDILADEKEN 244 + +AEEIAE K VD+++ + R S+D P G + L + L D E Sbjct: 625 QSEGRDGTAEEIAEACGKTVDEINAVRRHRTPPASLDWEVPNGKGGVELLGETLYDPDEP 684 Query: 245 GPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQ 304 D ++ ++ L L+ ++ VLA RFGL E TL+ +G G+TRER+RQ Sbjct: 685 TAYDAAVLAQLQSAVHGALDRLSEREAGVLAYRFGLATGEQLTLDQIGTIYGVTRERIRQ 744 Query: 305 IQVEG 309 I+ + Sbjct: 745 IEAKA 749 >UniRef50_C1DVG2 RNA polymerase sigma factor n=4 Tax=Hydrogenothermaceae RepID=C1DVG2_SULAA Length = 285 Score = 282 bits (723), Expect = 9e-75, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 152/281 (54%), Gaps = 8/281 (2%) Query: 55 LDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGL 114 + + Y+ I PLLT E+E + GD + +++I SNLR V+ IA+RY G+ Sbjct: 7 EEGVEYYIRSIYKIPLLTPEQEKEILEKIKLGDKEAFQKLILSNLRFVINIAKRYAGYGI 66 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 L DLI GN+GLI A ++FDP +G +F +YA WWI+Q+I + + IR P I Sbjct: 67 PLQDLISAGNIGLIEAAKRFDPSKGVKFISYAIWWIKQSIINTLSQEGDIIRKPTKIQSL 126 Query: 175 LNVYLRTARELSHKLDHEPSAEEI-----AEQLDKPVDDVSRMLRLNERITSVDTPL-GG 228 L L+ EPS +EI E L+ D + L N+ S+D P+ Sbjct: 127 FQKISNAYFYLKDSLNREPSVDEIHSFLLREGLEVEKDTIENYLFFNQHFISLDEPILSQ 186 Query: 229 DSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATL 288 D + L D +++ E D+D+ + I + L L+ +++++L RFGL G E TL Sbjct: 187 DEDIHLSDTISNSGTEDIERKLIDEDILKFIDELLDTLSPREKQILIHRFGLYGEEPKTL 246 Query: 289 EDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFR 329 ++VG +G++RERVRQI++ L++LR++ + IE L R Sbjct: 247 KEVGNIVGISRERVRQIEIRLLKKLRKLATKR--KIEDLIR 285 >UniRef50_Q4A5V6 RNA polymerase sigma factor n=3 Tax=Mycoplasma RepID=Q4A5V6_MYCS5 Length = 798 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 95/305 (31%), Positives = 166/305 (54%), Gaps = 22/305 (7%) Query: 31 VEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS-PLLTAEEEVYFARRALRGD-- 87 E + ++ +++ LS T D + Y+ IG LLT +EE A +G Sbjct: 476 DEIDLQIDEENKKQDLSNKLT-ETTDIVKWYMRWIGKYGKLLTPQEEKDLAEEMDKGGSR 534 Query: 88 -VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 146 +R +I+ NLRLVV A++Y NRGL+ +DL+ EGN GL++A +KFD ++GF+FSTYA Sbjct: 535 GKRARDLIIKRNLRLVVNAAKKYKNRGLSFIDLVSEGNAGLLKAAQKFDIKKGFKFSTYA 594 Query: 147 TWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPV 206 TWWIRQ+I RA+ +Q R IR+P+H+V+ +N + RE+ + E EEIA +L Sbjct: 595 TWWIRQSISRAVADQARIIRVPVHMVETINKIYKIEREIQQENGGEIIDEEIAARLGGKS 654 Query: 207 DD-----VSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 + + ++N S+D +G +++ D + DE P + +++ I Sbjct: 655 KKYDASYIRYIRKINTSPISLDKQVGKENDSFFGDFVKDESIISPVEFADKEELITKINY 714 Query: 262 WLFE-LNAKQREVLARRFGLLGY------EAATLEDVGREI-----GLTRERVRQIQVEG 309 ++ + L+ + +++ R G+ +ATL+++ ++ +++ERVRQI + Sbjct: 715 YVEKLLSEAEADLIKRYHGIGYDAKGNPVRSATLDEISKDFRGEGKKISKERVRQIITKI 774 Query: 310 LRRLR 314 ++LR Sbjct: 775 YKKLR 779 >UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacterium RepID=C6JJT6_FUSVA Length = 275 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 103/267 (38%), Positives = 159/267 (59%), Gaps = 2/267 (0%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRG 113 D LYL +I +L +EE+ +A GD S+ ++I SNLRLVV IA+ Y N+G Sbjct: 5 EKDLISLYLADIRKYKILDKDEELNLLIKAKAGDEESKNQLILSNLRLVVNIAKGYINKG 64 Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 L+ +DLI EGNLGLI A+EKFD +GFRFSTYA WWI+Q+I +A++ + R IR+P + Sbjct: 65 LSFIDLISEGNLGLIYAIEKFDITKGFRFSTYAVWWIKQSISKAVIVKGREIRIPSYKYD 124 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 LN R + P EEIA +L+ VD + ++ + S+ T +G D Sbjct: 125 LLNKVNRYVMSRLKDEGNYPPVEEIAAELNIDVDKIQDIIMDFQDPMSLSTQIGDD--IY 182 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 L D LA +++ E+ ++ ++ + + +L +++E+L R+GL GYE TLE++G Sbjct: 183 LEDTLAQQEDFSMEEEIFNEMGRKQVRDMVNQLEEREKEILKLRYGLDGYEIHTLEEIGN 242 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQ 320 + +TRERVRQI+ + L++LR + Sbjct: 243 TLNITRERVRQIEKKTLQKLRSKYTKE 269 >UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomycetales RepID=D1A523_THECD Length = 360 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 113/299 (37%), Positives = 156/299 (52%), Gaps = 27/299 (9%) Query: 48 QGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG--------------------- 86 + D YL IG + LL A+EEV A+ G Sbjct: 9 DSVETQDKDLVGAYLDRIGRTHLLDAQEEVDLAKAIEGGLYAEHLLEEDRVPPGVTRQEL 68 Query: 87 ------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 V +++R +E+NLRLVV IAR+Y L L+DLI+EGNLGL+RAVEKFD RGF Sbjct: 69 EELVAAGVRAKQRFVEANLRLVVSIARKYPTDALPLIDLIQEGNLGLMRAVEKFDYRRGF 128 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 +FSTYATWWIRQ+I R + + RTIRLP+H+ +EL+ R R+L +L EP+ EE+AE Sbjct: 129 KFSTYATWWIRQSIGRGLSHTARTIRLPVHVEEELSRLRRAERQLGRELGREPTREELAE 188 Query: 201 QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIV 260 L VD V +LR S+D + E + D+L D + PE D + Sbjct: 189 ALGAAVDHVDELLRWRRDPASLDAAVDDAGETPMGDLLEDPEGVSPEAEVLALDDIAGLA 248 Query: 261 KWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 + L L ++ +L RFG+ + + +G GL+ RVRQI LRRLR++ Sbjct: 249 RLLDRLPERESAILRARFGIEDGQPLSYAQIGARYGLSHNRVRQITDRSLRRLRQLAAE 307 >UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G031_9DELT Length = 431 Score = 281 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 88/243 (36%), Positives = 150/243 (61%), Gaps = 1/243 (0%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 RR+ R +++ + +++NLRLVV IARR+ + + L DLI+EGN+GL++AV++FD +GF Sbjct: 188 RRSSRKLRSAKNKFVKANLRLVVSIARRFNHGRMPLQDLIQEGNIGLMKAVDRFDYRKGF 247 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 RFSTY +WWIR I RAI ++ R +RLP+H++ + + REL KL EP+ EE+A+ Sbjct: 248 RFSTYGSWWIRHAISRAIADKGRQVRLPVHMIDAYHKVNKARRELEAKLGREPTREELAQ 307 Query: 201 QLDKPVDDVSRM-LRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 + + RM L + S+D P+ + + D L DE P + + D + + + Sbjct: 308 HTGIALAKIERMGTMLVDNPISLDKPVSDADGRKMGDFLEDENAEDPGEGLEADALNEQV 367 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 + + +L + +++ +RFGL+ E TL+++G + L+RER+RQ+Q + L ++R L+ Sbjct: 368 KRLVSKLRPIEADIIRKRFGLIDDEELTLKEIGGQYSLSRERIRQLQEQALGKIRRELKR 427 Query: 320 QGL 322 L Sbjct: 428 LEL 430 >UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4C50 Length = 521 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 102/306 (33%), Positives = 163/306 (53%), Gaps = 3/306 (0%) Query: 21 GVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYF- 79 E+ + + +D + A+ L + +TA+E Sbjct: 208 RTEILERWTDELNDLADELKHLAIAHAAAASPADRARLGRQLRDAECRACMTADELAALV 267 Query: 80 --ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137 R+ A R+ + E+NLRLVV IA+ Y NRGL DLI+EGN GL+RAV+K++ Sbjct: 268 RVLRKRRLAYQAVRKELAEANLRLVVSIAKNYRNRGLPFSDLIQEGNRGLMRAVDKYEWR 327 Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197 F+F TYATWW+RQ I RA+ + RT+R+P H + L+ + EL+ EP++EE Sbjct: 328 LEFKFGTYATWWVRQGITRALHDNARTVRVPCHQISLLSRMEKLRGELTVATGREPTSEE 387 Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257 +AE L ++ + + S++ +GGD E+AL D L+D + P + + +K+ Sbjct: 388 LAEALGVKPEEARSLRIVGRHPVSLNDSVGGDGERALEDFLSDTHISPPGEHVDANLLKE 447 Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 I + L L ++REV+ RFGL TL++V ++ G+TRER+RQI+ GL +LR+ Sbjct: 448 RIGEVLKSLAPREREVIELRFGLKDGTPKTLDEVAKQYGITRERIRQIEARGLLKLRQPT 507 Query: 318 QTQGLN 323 ++ L Sbjct: 508 RSCRLE 513 Score = 40.8 bits (95), Expect = 0.075, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 2/85 (2%) Query: 9 HDLNEDAEFDENGVEVFDEKALVEQ--EPSDNDLAEEELLSQGATQRVLDATQLYLGEIG 66 DL+E A + + +++ ++ +E DA LYL ++G Sbjct: 20 EDLDEKAHGRDEDEDDLADESDEDEDTALEPARGEDEGAAEDEYASGPDDALGLYLRQMG 79 Query: 67 YSPLLTAEEEVYFARRALRGDVASR 91 PLL E+E+ A+R R Sbjct: 80 SIPLLNREKELALAKRLEHHRNRFR 104 >UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKU3_THEYD Length = 427 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 110/351 (31%), Positives = 192/351 (54%), Gaps = 28/351 (7%) Query: 2 SQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDA---- 57 S+N K ++ +D +E +E E+ + E + + + ++ +++ D Sbjct: 82 SKNPEKAKEMLDDE--EEIDIEQIKERFIKVSE-NIKKIMRRKKTTKEFLKKIFDIPLRD 138 Query: 58 ---------TQLYLGEIGYSPLL------TAEEEVY---FARRALRGDVASRRRMIESNL 99 + EI L T EE + ++ ++ +MIESNL Sbjct: 139 ELTNMFVEELDKFRREIIKGENLQPITGMTNEEFLDHFMTIKKIFNEFTEAKNKMIESNL 198 Query: 100 RLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM 159 +LVV IA++Y RGL L DLI+EGN+GL++AVEKF+ ++GF+FSTY+TWWIRQ+I RAI Sbjct: 199 KLVVSIAKKYTGRGLNLEDLIQEGNIGLMKAVEKFEYKKGFKFSTYSTWWIRQSINRAIA 258 Query: 160 NQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERI 219 ++TIR+P+H++ + + REL ++EP EEI+ L+ P D ++ L +++ Sbjct: 259 EHSKTIRIPVHVIDNICKINKIYRELYQNSENEPDIEEISLNLNIPSDKIADFLAISKEP 318 Query: 220 TSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFG 279 S+D L D + L + + D P + DD+K I K L+ +++E+L RR+G Sbjct: 319 VSIDMSL-RDDDSLLKEFIEDMNSPNPYEEALHDDLKHLIEKVFSLLSKREKEILMRRYG 377 Query: 280 LLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 + + +L++VG+E ++RER+RQI++ +R+L+ + + + L RE Sbjct: 378 INEEKPKSLDEVGKEFSVSRERIRQIELRAMRKLKRLCRLKWL--REFIRE 426 >UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LEA3_RALME Length = 617 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 95/233 (40%), Positives = 147/233 (63%) Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 151 MI SNLRLVV A++Y +RG+ LLDLI+EGNLGL+RAV++FD RG++FSTYATWWIR Sbjct: 380 DEMIRSNLRLVVSNAKKYLHRGMPLLDLIQEGNLGLMRAVDRFDYRRGYKFSTYATWWIR 439 Query: 152 QTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSR 211 Q I RAI ++ TIR+PIH+V+ + R +REL H+ P+ E +A +L V V Sbjct: 440 QGITRAIADKGPTIRIPIHLVEVVGKVNRASRELFHETGEAPAPEALAARLSLSVKKVKA 499 Query: 212 MLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQR 271 +L L + S++ +G + L D L DE P+++ +++ + + L L ++ Sbjct: 500 ILDLVKEPLSLEMSVGESGDALLWDTLTDECSASPDESAMRVSLRKDLDEALATLKPREA 559 Query: 272 EVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNI 324 +++ R+G+ TLE++G++ GL+RERVRQ++ + LR+LR + L Sbjct: 560 KIVKMRYGVDAGTDYTLEEIGQQYGLSRERVRQLERQALRKLRNPDRAPRLQA 612 Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 19/121 (15%) Query: 17 FDENGVEVFDEKALVEQEPSDNDLA-------------EEELLSQGATQRVLDATQLYLG 63 +E GV++ + E + + + G R D QLYL Sbjct: 43 LEELGVQIVERTLANEPIRLEEHADALVVDEAVIEEAAAAVMQADGREARTTDPVQLYLR 102 Query: 64 EIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVK----IARRYGNRGLALLDL 119 EIG PLLT E+EV ARR M+ LVV +A +A+ DL Sbjct: 103 EIGTIPLLTREDEVAIARRHEIAVTEMVAEMVSC--PLVVYELLTMADEIERGEMAVDDL 160 Query: 120 I 120 I Sbjct: 161 I 161 >UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31 Tax=Bacteria RepID=RPOD_SERMA Length = 215 Score = 280 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 84/209 (40%), Positives = 140/209 (66%) Query: 114 LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVK 173 L LDLI+EGN+GL++AV+KF+ RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ Sbjct: 1 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 60 Query: 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA 233 +N R +R++ ++ EP+ EE+AE++ P D + ++L++ + S++TP+G D + Sbjct: 61 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 120 Query: 234 LLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGR 293 L D + D P D+ + ++ + L L A++ +VL RFG+ TLE+VG+ Sbjct: 121 LGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREXKVLRMRFGIDMNTDHTLEEVGK 180 Query: 294 EIGLTRERVRQIQVEGLRRLREILQTQGL 322 + +TRER+RQI+ + LR+LR +++ L Sbjct: 181 QFDVTRERIRQIEAKALRKLRHPSRSEVL 209 >UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacteria RepID=Q7U3K5_SYNPX Length = 467 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 106/247 (42%), Positives = 148/247 (59%), Gaps = 1/247 (0%) Query: 76 EVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 E + ALR ++ MI++NLRLVV +A++Y RG+ LLDL++EG LGL RAVEKFD Sbjct: 213 EARELKTALRNGRRAKDHMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFD 272 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 P RGFRFSTYA WWIRQ + RAI Q+RTIRLP+H+ ++LN R +E++ S Sbjct: 273 PTRGFRFSTYAYWWIRQGMTRAIATQSRTIRLPVHVTEKLNRIKRAQQEIATNEGRIASI 332 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 ++A L D V + L R S+DT +G D + L D++ D K PE T D++ Sbjct: 333 ADLARALKLSEDTVRQTLARVPRSVSLDTRVGRDQDTQLGDLIEDGKA-TPEQTLTHDEL 391 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 + L EL +++ VL RRFGL TL +G + L+RERVRQI+ L +LR+ Sbjct: 392 HNDLEHLLDELTSREAAVLRRRFGLEDDTPQTLAQIGEALKLSRERVRQIETRALLKLRQ 451 Query: 316 ILQTQGL 322 + + Sbjct: 452 PQRRSKV 458 Score = 42.8 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%) Query: 35 PSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRR 93 P ++ D +LYL +IG LLT EEEV AR R + +++ Sbjct: 90 PLPRQPRRTGETRDRRSRSTTDLLRLYLQDIGRVDLLTNEEEVTLARLVQRREALLQQQ 148 >UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium caldarium RepID=Q9ZTL1_CYACA Length = 589 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 108/349 (30%), Positives = 173/349 (49%), Gaps = 45/349 (12%) Query: 13 EDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRV-LDATQLYLGEIGYSPLL 71 E+ E + +E+ + + SD+ ++ + D+ YL EIG L Sbjct: 213 EEDEVTIDEIEIAAKTVARIMDYSDSYWSDHGNKKNRRRRSTNSDSFSTYLTEIGKVHRL 272 Query: 72 TAEEEVY-----------------FARRALR-----------------------GDVASR 91 + EEE RR R ++ Sbjct: 273 SLEEEKEICQEIAFFTHLEAVREDLRRRIGRLPREHEWAMETNMSVSELRGKLIKGRRAK 332 Query: 92 RRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 151 RM+ +NLRLV+ A+R+ NRG+A DL++EG++GLIR VEK+D RGFRFSTYA+WWIR Sbjct: 333 NRMVAANLRLVICFAKRFRNRGVAFQDLVQEGSIGLIRGVEKYDANRGFRFSTYASWWIR 392 Query: 152 QTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSR 211 Q I +A++ ++ RLP+H+ + + R + EL + L EP+ EIA ++ P + V Sbjct: 393 QGIHKALLECSKMFRLPVHVNEMIKEIRRCSYELMNILGREPTKLEIAMKVGMPEEKVIF 452 Query: 212 MLRLNERITSVDTPLGGDSEK----ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267 +L+ + S++ PL G L D+++ PED+ ++ + + L +L+ Sbjct: 453 LLQRAQTALSLEMPLRGSDSSLESRTLGDVVSSTASPSPEDSAFGTSLRYDLERALSQLD 512 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREI 316 ++REV+ RFGL +L +VG +TRERVRQI+ LR+LR+ Sbjct: 513 FREREVIRMRFGLDDGRTKSLGEVGSLFCVTRERVRQIETRALRKLRDP 561 >UniRef50_Q39477 RNA polymerase sigma factor (Fragment) n=1 Tax=Cyanidium caldarium RepID=Q39477_CYACA Length = 609 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 99/401 (24%), Positives = 159/401 (39%), Gaps = 80/401 (19%) Query: 2 SQNTLKVHDL--NEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQ 59 ++ + V D+ + ++ E+ E + + + + Sbjct: 203 NRKSSNVDDMSMEDIHYLEKQEKEILSMAITKEDALLIESIVNRPTTASSKQIKKGSSMG 262 Query: 60 LYLGEIGYSPLLTAEEEVYFARRALR---------------------------------- 85 +L EIG PLLT + V AR + Sbjct: 263 AFLKEIGSVPLLTESQVVSLAREIRKLALWNATRIQLRHEYGKEPDRTEWAKALNMSAEE 322 Query: 86 ------GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 +R ++ +NLRLVV +A+++ NRGL++ DLI+EG++GLI+ E+FD G Sbjct: 323 LTRNLLRAQRARESLVAANLRLVVSVAKQFTNRGLSMQDLIQEGSIGLIKGAERFDYRTG 382 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 FRFSTYA WWIRQ ++RAI + +R IR+P I R ELS L +P+ E+A Sbjct: 383 FRFSTYAMWWIRQAMQRAIADTSRPIRIPSTITDLSVQIYRARLELSSTLGRDPTDAELA 442 Query: 200 EQLDKPVDDVSRMLRLNER--ITSVDTPLGGD---------------------------- 229 + LD V + + + S+D P+ Sbjct: 443 DFLDISVQRLQDVKLYTNQSATVSLDAPVSRQVTNTCIKSKGTGDTDVFSSKADGKLSKN 502 Query: 230 --------SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL 281 + L D + ++ PE D M+ I L LN +REV+ RFGL Sbjct: 503 GYGSRHKLGDFTLGDTVQTDESVSPEHMMADSLMRDDIECALSLLNPYEREVIRMRFGLD 562 Query: 282 GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 ++++V + R+R+I+ LR+LR L Sbjct: 563 DGRMKSVDEVCAYYCVQTSRIRRIEARALRKLRHPSVWHML 603 >UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK04_9BACT Length = 404 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 101/326 (30%), Positives = 171/326 (52%), Gaps = 14/326 (4%) Query: 14 DAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLD---ATQLYLGEIGYSPL 70 + D + +V + + E++ +D E L+ + ++ D + Y Sbjct: 78 ERSSDYSVADVVEYLSNTEEQSEGHDPEENSLIYKVLANKIRDLQFSVAFYTDMSEKFKQ 137 Query: 71 LTAEE----EVYF-------ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDL 119 E+ E R++ S M+E NLRLV+ IAR+Y N LDL Sbjct: 138 KEFEDCFILEESLKKPFADGFRKSYYRMENSVNAMVEGNLRLVISIARKYSNSQEGFLDL 197 Query: 120 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179 I+EGN+GL+ AVEK+D G+ FSTYATWWIRQ + RA RT++LP +I+ ++N Sbjct: 198 IQEGNIGLVSAVEKYDASFGYTFSTYATWWIRQAVSRARTELVRTMKLPANIMVKVNKIY 257 Query: 180 RTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILA 239 RT REL K E + +E++E ++ + + R+ ++ S+ T + + L DI++ Sbjct: 258 RTERELFQKFGREATIDEVSEAVELSPAKIRSLKRMCQQPISLQTTVSEEHTGELGDIVS 317 Query: 240 DEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTR 299 ++ + P+ + + +S+V L LN +++E+L RFGL E TLE++ E G++R Sbjct: 318 NDDDVLPDAEVEQKQLHESLVAMLDILNEREQEILRMRFGLADGEYHTLENIANEFGISR 377 Query: 300 ERVRQIQVEGLRRLREILQTQGLNIE 325 ER+RQI+ L++LR + L ++ Sbjct: 378 ERIRQIETSALKKLRRPTAVKCLGLD 403 >UniRef50_C6Y0F4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y0F4_PEDHD Length = 289 Score = 276 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 88/273 (32%), Positives = 148/273 (54%) Query: 41 AEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR 100 + +S +R D + YL EIG L EEE GD + R+I+ NLR Sbjct: 1 MKRFTISPSIAKRDSDVVESYLSEIGRISLTDPEEEFRLVSAIRNGDQEALHRLIKGNLR 60 Query: 101 LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 VV +A++Y ++GL L DLI EGN+GLI+A +FD RGF+F T+A WW+RQ I +AI Sbjct: 61 FVVSVAKKYQDKGLKLGDLINEGNIGLIKAAHRFDATRGFKFITFAVWWVRQAILQAIAE 120 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERIT 220 Q R IRLP + + ++ + +L +L+ P+ EE+A VD V Sbjct: 121 QRRLIRLPGNQLLGISRLNQAVLKLEQQLERMPTVEELAVYTGFTVDKVMDYTANAAFTY 180 Query: 221 SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL 280 S+D + +S L++++ADE + + T + + + L L+ ++++++ +GL Sbjct: 181 SLDDVIKEESGSTLMEVIADEATHQTDHFTLAASLSTDLNRALDILSKREQKIIILFYGL 240 Query: 281 LGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 GY +ED+ + + L++ER+RQ++ + + L Sbjct: 241 NGYPQTAIEDMQKILKLSKERIRQLKDKAHKTL 273 >UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C9_CYAPA Length = 431 Score = 276 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 108/311 (34%), Positives = 161/311 (51%), Gaps = 49/311 (15%) Query: 54 VLDATQLYLGEIGYSPLLTAEEEVYFARRALR-------------------GDVA----- 89 D+ + YL EIG LL AE+E+ A+R D Sbjct: 110 SEDSGRRYLQEIGEISLLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAA 169 Query: 90 -----------------SRRRMIESNLRLVVKIARRYGNRG--LALLDLIEEGNLGLIRA 130 +R R++ +NLR VV +A++Y + +++ DLI+EGN+GLIRA Sbjct: 170 ALSDAEELRHMVRVGTLARDRLVRANLRWVVAVAKKYHKQRGTMSMQDLIQEGNIGLIRA 229 Query: 131 VEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLD 190 VEKFDP G+RF+TYATWWIRQ I R+I N +R IRLP H +++N R LS L Sbjct: 230 VEKFDPRMGYRFTTYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLG 289 Query: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERI--TSVDTPLGGDSEK--ALLDILADEKENGP 246 +P+ EIAE + + + + + S+D P+ + + D + E E P Sbjct: 290 RQPTEAEIAEHVGLDPSRMRKFVESAAAVATVSLDVPINESDNQSATIGDFIRSENEG-P 348 Query: 247 EDTTQDDDMKQSIVKWLFE-LNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQI 305 D + + M++S+ + L + L+ ++ VL RFGL E TL VG +G+TRERVRQI Sbjct: 349 ADRAERELMRESVARTLAKALSEREYMVLRMRFGLDDGEPKTLNQVGETLGVTRERVRQI 408 Query: 306 QVEGLRRLREI 316 +++ LR+LR Sbjct: 409 EMKALRKLRRP 419 >UniRef50_D1AXM9 RNA polymerase sigma factor n=5 Tax=Fusobacteriaceae RepID=D1AXM9_STRM9 Length = 280 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 161/277 (58%), Gaps = 4/277 (1%) Query: 44 ELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG-DVASRRRMIESNLRLV 102 + ++ ++ LY+ ++ LLT+EEEV +R D ++ +I SNLRLV Sbjct: 2 KNDKTNSSDNNINLISLYISDLQNHELLTSEEEVELFKRVREENDEQAKHLLILSNLRLV 61 Query: 103 VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQT 162 V A++ G+ L+DLI EGNLGLI++++KFD +G RFSTYA WWI+QTI+++I+N Sbjct: 62 VSEAKKLLGNGMPLIDLISEGNLGLIKSIDKFDYTKGLRFSTYAVWWIKQTIKKSIVNLG 121 Query: 163 RTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSV 222 R IR+P + ++L+ + ++ P+AE IAE L V + + I S+ Sbjct: 122 RDIRIPSYKYEQLSKVNKVIESYQNEFGDIPTAEYIAEVLGMKPSKVVLLQNEFQEIISL 181 Query: 223 DTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLG 282 + +G L D++ + +N +D ++D + + + LN +++E+L R+GL Sbjct: 182 NDAIG--DNIFLEDVIG-QSDNVEDDIIRNDQLSEMYNLFDKTLNPREKEILELRYGLAN 238 Query: 283 YEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 + TL+++G ++ +TRERVRQI+ + + +L++ L+ Sbjct: 239 NKIHTLKEIGEKLSITRERVRQIEKKAITKLKKNLEE 275 >UniRef50_A7MZX8 RNA polymerase sigma factor n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MZX8_VIBHB Length = 287 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 121/279 (43%), Positives = 179/279 (64%), Gaps = 1/279 (0%) Query: 41 AEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR 100 + + + L A +Y +IG LL+A++E +ARRA GD +R RMI SNLR Sbjct: 1 MDSKKIKINNNSSELTAELIYFNDIGKYALLSADDEREYARRAKMGDADARTRMINSNLR 60 Query: 101 LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 LVV IA+RY RGL LDLI EGN+GL+RAVEKFDPE+GFRFSTYAT WIRQ+IER +MN Sbjct: 61 LVVNIAKRYKGRGLTFLDLISEGNIGLMRAVEKFDPEKGFRFSTYATHWIRQSIERELMN 120 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERIT 220 Q RT+RLP+HI KEL Y++ +ELS K + +IA+ L+ PV V + L ++ Sbjct: 121 QARTVRLPVHINKELKRYVKATKELSQKTQ-TITPRDIADHLEIPVSSVLKHLEFDKSTI 179 Query: 221 SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL 280 S+D+ + K L + +A + PE ++D+ +++W+ EL + +L RR+GL Sbjct: 180 SLDSYQDKEEAKPLAETMACHRLRCPELELEEDNAFLMLLQWIEELEPDLKLILTRRYGL 239 Query: 281 LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 G +L+ VG E+G +RER+R +Q++G+++L+ + + Sbjct: 240 DGNTPTSLDTVGTELGYSRERIRHLQMQGIKKLQNLAKN 278 >UniRef50_Q2JMC5 RNA polymerase sigma factor n=2 Tax=Synechococcus RepID=Q2JMC5_SYNJB Length = 319 Score = 273 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 110/291 (37%), Positives = 160/291 (54%), Gaps = 34/291 (11%) Query: 49 GATQRVLDATQLYLGEIGYSPLLTAEEEVYFA---------------------------- 80 + + DA +L IG LLTAEEE+ A Sbjct: 2 SESLDLQDAVGRFLKTIGRYSLLTAEEELRLAHQVQRMVTLLEQRQPHESVEGWSQRLGI 61 Query: 81 -----RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 ++ LR A+++RM+E NLRLVV IA+RY NRGL LDLI+EG +GL RAVEKFD Sbjct: 62 PLAELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQEGTIGLTRAVEKFD 121 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 P RG++FSTYATWWIRQ++ R I N+ R IRLP H+ ++++ R RELS + P A Sbjct: 122 PTRGYKFSTYATWWIRQSVNRGIQNKGRMIRLPAHMYEKVSQVKRRYRELSAERGSRPQA 181 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 EE+ + LD + + R + S++ +G + L + DE N P + Sbjct: 182 EEVFDSLDIGDNYRELITRHMAEMRSLNVGVGDEDGTELQHFIPDED-NDPVEHLTQLAR 240 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQ 306 ++ + + +L+ ++R+V+ R+GL G TL ++G IGL+RERVRQI+ Sbjct: 241 REEVRALVGQLSERERQVIVARYGLDGSRGLTLREIGEHIGLSRERVRQIE 291 >UniRef50_Q9ZSL6 Sigma-like factor n=2 Tax=Arabidopsis thaliana RepID=Q9ZSL6_ARATH Length = 419 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 142/282 (50%), Gaps = 16/282 (5%) Query: 60 LYLGEIGYSPLL-TAEEEVYF---------------ARRALRGDVASRRRMIESNLRLVV 103 LYL E L T+ EE A L +R ++ RLVV Sbjct: 133 LYLKEGAKLENLGTSVEENEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYRRLVV 192 Query: 104 KIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTR 163 IA Y +GL L DLI+EG++GL+R E+FDP+RG++ STY WWI+Q I RAI +++R Sbjct: 193 SIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSR 252 Query: 164 TIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVD 223 ++LP + + + L+ KL +PS EEIAE L+ V V + + S+D Sbjct: 253 LVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLD 312 Query: 224 TPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGY 283 + L +I+ E PE+ + + MK I + L L A++ VL FGL G Sbjct: 313 RVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGE 372 Query: 284 EAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 + E++G+ + L+RERVRQI L++LR + L I Sbjct: 373 TPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414 >UniRef50_A5UVI3 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UVI3_ROSS1 Length = 398 Score = 273 bits (699), Expect = 7e-72, Method: Composition-based stats. Identities = 101/324 (31%), Positives = 172/324 (53%), Gaps = 30/324 (9%) Query: 19 ENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGY--SPLLTAEEE 76 E + +E + E ++DL ++ ++ V + +G G LL+A +E Sbjct: 61 ERILRTLEECQVQVVEAEESDLGNDDFATE-IADEVFEMLAEMMGRAGEFDHELLSAADE 119 Query: 77 VYF-------------------------ARRALRGDVASRRRMIESNLRLVVKIARRYG- 110 A R ++ + ++ NLRLV KIA RY Sbjct: 120 RRLLEIYHDGLRAKRELQSGLSSVQQYAAERRIKASEEAIDTLMRCNLRLVAKIATRYMP 179 Query: 111 -NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 R L DL++EG +GL++A+E+FD R STYA +WIRQ+I+RA+ +Q R +RLP+ Sbjct: 180 YARHLTFDDLLQEGRIGLLKAIERFDQNCRGRLSTYAVYWIRQSIQRALADQDRMVRLPV 239 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD 229 HIV++L+ +T + EP E+A L + V + R+ + TS+D P+G D Sbjct: 240 HIVEQLHRLRKTCEQFRCIHGREPGDAELANALGVSLAKVRSLWRVAQHHTSIDRPVGAD 299 Query: 230 SEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLE 289 + L +++AD++E GP+ + + + + L L++++R++L RR+GL+ + TLE Sbjct: 300 TNTFLGELIADDREEGPDFICEQQLLHAVLREVLGHLSSRERDILERRYGLIDGQTHTLE 359 Query: 290 DVGREIGLTRERVRQIQVEGLRRL 313 ++G+ GLTRER+RQI+ + L+RL Sbjct: 360 EIGQIFGLTRERIRQIERKALKRL 383 >UniRef50_D0YYF5 RNA polymerase sigma factor RpoS n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YYF5_LISDA Length = 282 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 107/272 (39%), Positives = 170/272 (62%), Gaps = 3/272 (1%) Query: 59 QLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 +YL ++ LLT EEE+ + + GD +R ++IESNLRLVV IA++ +RGL L D Sbjct: 8 GIYLKQLRSRALLTKEEEIELSIKVQAGDQKARAKLIESNLRLVVSIAKKMQHRGLDLDD 67 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI EGN+GLI AVEKF+P+ G+RFSTYATWWI+Q ++RAI N +R +RLP+HI KEL Sbjct: 68 LINEGNIGLITAVEKFNPDYGYRFSTYATWWIKQAMDRAIHNHSREVRLPVHISKELCTI 127 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDIL 238 +E+S K + + ++++ P +++ ++L+ R +S+D D +I+ Sbjct: 128 YSAFKEMSTK-SEQVTIDQVSALTGSPKEEIEKILKYERRYSSLDDQF--DEGAKFSEII 184 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 D + + ++D + + L EL + +E++ARRFGL GYE TL++V + LT Sbjct: 185 PDHSKLDHTELLNEEDQTEVLAMLLAELKPRDQEIIARRFGLFGYEPHTLQEVATAVNLT 244 Query: 299 RERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 RERVRQ+Q+ +RL ++ + + +E++ E Sbjct: 245 RERVRQLQILAQQRLAAKMRDRNITLESMLVE 276 >UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7J7_9BACT Length = 428 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 91/258 (35%), Positives = 143/258 (55%), Gaps = 4/258 (1%) Query: 70 LLTAEE---EVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLG 126 L+T EE E+ R++MIE+NLRLV+ IA++Y NRGL DLI+EGNLG Sbjct: 163 LMTYEELTGEIRKLLEIHEELQNLRQKMIEANLRLVISIAQKYRNRGLPFNDLIQEGNLG 222 Query: 127 LIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELS 186 L+RA+EKFD G +FSTYA+WWI+ I R+I Q+R IR+P H+V +N + Sbjct: 223 LLRALEKFDFRLGNKFSTYASWWIKHNISRSIAEQSRVIRIPAHMVHAINSMTWAEQRFI 282 Query: 187 HKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL-GGDSEKALLDILADEKENG 245 EP +E+A L+ PV +S + +++ + S+ P+ + L D++AD+ Sbjct: 283 QSHGREPEIDELAAVLEMPVARISAIRKMSCQTISLQAPVSSSEDGAMLEDLIADDSTAN 342 Query: 246 PEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQI 305 P + + + L L + ++++ RFGL G L D+ R LTRER+RQ+ Sbjct: 343 PVRDFARKILYDKLYEMLRTLPERDQQIIILRFGLFGQPCLPLVDISRRFNLTRERIRQL 402 Query: 306 QVEGLRRLREILQTQGLN 323 + + + LR + + L+ Sbjct: 403 EAKIIENLRSPAKLKYLD 420 >UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRC2_HALO1 Length = 436 Score = 270 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 97/321 (30%), Positives = 161/321 (50%), Gaps = 18/321 (5%) Query: 2 SQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLY 61 S++ L + + ++ +A++ + + D + + + + Y Sbjct: 129 SRDKLNRAAVTAAIKIRALDLDRTHVEAIIAELEALRDGSASGSQPRPSFAPKSRSFGEY 188 Query: 62 LGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIE 121 L + S R + +NLRLVV +ARRY G+ L DLI+ Sbjct: 189 LRAVKSS---------------FARGARLRNEFVHANLRLVVTMARRYDRGGMPLADLIQ 233 Query: 122 EGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRT 181 EGNLGL+ AV +FD RG RFSTYA WWIR I RA+ +++R +R+P+H+++ + Sbjct: 234 EGNLGLMHAVSRFDYRRGLRFSTYACWWIRHAIGRALADKSRAVRIPVHMLEAQQQLAKV 293 Query: 182 ARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR-LNERITSVDTPLGGDSEKALLDILAD 240 +L +L EP+ E+A+ P+ +++M R L + S+D PL D ++A D+LAD Sbjct: 294 QAKLIGELGREPTPSELAKAAQVPLAKLNQMHRYLMGQPMSLDRPLYDDDDRAFGDMLAD 353 Query: 241 E--KENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT 298 +++ P D + + L L + +VL +RFGL+ E T ++G + L+ Sbjct: 354 PLSEDSSPVDDLTTQTLTSRVETLLDHLTPIEADVLRQRFGLMDDEERTFREIGDQYDLS 413 Query: 299 RERVRQIQVEGLRRLREILQT 319 RER+RQIQ L +LR L+ Sbjct: 414 RERIRQIQNAALGKLRRALER 434 >UniRef50_A6ECH2 RNA polymerase sigma factor n=2 Tax=Pedobacter sp. BAL39 RepID=A6ECH2_9SPHI Length = 288 Score = 270 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 152/280 (54%), Gaps = 1/280 (0%) Query: 41 AEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR 100 + +S+ T R D+ + YL EI LL EEEV A GD A+ +++ +NLR Sbjct: 1 MRQIRISKSITDRGGDSLEKYLSEISKIELLNVEEEVRLASIVREGDRAALDKLVSANLR 60 Query: 101 LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 VV +A+ Y + GL L DLI EGNLGLI+A ++D +GF+F ++A WWIRQ+I AI + Sbjct: 61 FVVSVAKNYQDMGLRLADLISEGNLGLIKAASRYDHTKGFKFISFAVWWIRQSITYAIAD 120 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERIT 220 Q R IRLP + + + RT+ L KL+ PS EE+AE LD P V + T Sbjct: 121 QHRMIRLPGNQIVGITRLNRTSDLLEQKLERRPSLEEVAEALDLPETKVVDYQMSALKTT 180 Query: 221 SVDTPL-GGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFG 279 S+D P+ G+ ++ + + + + +++ + L L +++++L+ +G Sbjct: 181 SLDMPILLGEPGTTFGHMIRNSEVEAADAVLDRQSLAENVRRLLSILPPREQKILSLYYG 240 Query: 280 LLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 L G LED+ L++ER+RQ++ + ++ L+ Sbjct: 241 LGGMPQTRLEDMVPVFHLSKERLRQLKDKAVKTLKACCSE 280 >UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0QYD2_BRAHW Length = 309 Score = 270 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 98/304 (32%), Positives = 169/304 (55%), Gaps = 25/304 (8%) Query: 45 LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRAL--RGDVASRR---------- 92 +L + Q +YL +IG LT EEE+ +R R D A Sbjct: 1 MLKKDINQEYKGPVSVYLKQIGEIRRLTKEEELDLWQRLEVCRNDRALLENNDDEESLKK 60 Query: 93 -------------RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 ++++SNLRLV+ IA+RY N G+ +D+I+EGN+GLI AV++F+ ++G Sbjct: 61 IEEIDKEIDSIQHKLVKSNLRLVISIAKRYYNSGVPFIDIIDEGNIGLIEAVKRFEYKKG 120 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 F+FSTY WWI+Q+I + I ++ IR P+HI + + ++T++ L+ KL +P+ +EI+ Sbjct: 121 FKFSTYGVWWIKQSIVKEISSKRHIIRFPMHIARLIKKSIQTSKTLTQKLGRDPTIDEIS 180 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 +++ +S ++ + SVD+ + I+ D+ P D ++ ++ Sbjct: 181 KEMKIDRKTLSYIMIFTQDTASVDSFFRNSDNNDMTSIIEDKNFPSPHQKAFMDSLRDTL 240 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 + L L+ K+R V+ R+GL G EA TLED G+E+ +TRERVRQIQ++ +++L + + Sbjct: 241 TEALKCLDEKERTVIISRYGLYGKEAKTLEDTGKELNITRERVRQIQIKAIKKLAGLNLS 300 Query: 320 QGLN 323 + L Sbjct: 301 KELK 304 >UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderiales RepID=B1K0Z2_BURCC Length = 857 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 89/243 (36%), Positives = 138/243 (56%), Gaps = 4/243 (1%) Query: 83 ALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRF 142 A++ +R RM +NL+LV +A++Y G L DL +EGN+GL++AVE+FD RGF+F Sbjct: 508 AMKAYQLARERMAVANLKLVFHLAKKYRYSGEPLDDLAQEGNIGLLKAVERFDWRRGFKF 567 Query: 143 STYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQL 202 STYATWWIRQ I R + ++ RT+R+P+H+ ++ R + L + P EIA +L Sbjct: 568 STYATWWIRQQIGRHLADKCRTVRVPVHVHEKAQRLSRETQALESETGRAPELHEIAARL 627 Query: 203 DKPVDDVSRMLRLNERITSVDT-PLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 + V V+ + RL + P+ E +++ +D P D ++ ++I K Sbjct: 628 NMAVQKVAELQRLAPEPLPIHELPI---DELIAVEVRSDFVSPDPMDIVSKSELLETIDK 684 Query: 262 WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 L L K+ + L RFG+ EA TLE++G + G+TRERVRQI+V LR L+ + Sbjct: 685 LLSTLKPKEEQTLRLRFGIGVEEALTLEEIGCQYGVTRERVRQIEVAALRNLKHPRRMDA 744 Query: 322 LNI 324 Sbjct: 745 FAC 747 >UniRef50_A9G730 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G730_SORC5 Length = 463 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 132/229 (57%), Gaps = 1/229 (0%) Query: 95 IESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI 154 + +NLRLV AR+ +RG+ LLDLI+EGNLGLIRA EKFD RG+RFSTYA WWI+Q + Sbjct: 231 VRANLRLVAAAARQLRHRGVPLLDLIQEGNLGLIRAAEKFDYRRGYRFSTYAMWWIKQAL 290 Query: 155 ERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR 214 RA++ Q + IR+P+HI + L+ REL + E + EE+AE+ ++ + + Sbjct: 291 SRALLYQGQVIRVPVHIAETRRRALQARRELEQEHAREAAPEEVAERSGLSMEKLQALRE 350 Query: 215 LNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVL 274 + +D P+G D D A E P++ + + L L ++R+VL Sbjct: 351 MALPPVYLDAPVGDDDGARQGDFFASEGAA-PDELLVHRRLHAQVSALLESLTPRERDVL 409 Query: 275 ARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 RFGL G + TL ++G ++RERVRQI+ L +LR + + Q L Sbjct: 410 RLRFGLDGGQPHTLAEIGGMFSVSRERVRQIEESALSKLRTLSRRQALE 458 >UniRef50_A4AF82 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=A4AF82_9ACTN Length = 1108 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 107/340 (31%), Positives = 156/340 (45%), Gaps = 32/340 (9%) Query: 13 EDAEFDENGVEVFDEKALVEQEPSDNDLAEEEL-LSQGATQRVLDATQLYLGEIGYSPLL 71 E A E D + E + E + L D + PLL Sbjct: 576 EQAALQAAKDEARDARYAREAARGELTDDGERMQLIPDVLGASDDLVLDLRQRLNDFPLL 635 Query: 72 TAEEEVYFARRALRG-----------------------------DVASRRRMIESNLRLV 102 +A++EV AR G + R SN RLV Sbjct: 636 SADQEVLLAREIEAGLFAQEQFDLLDRREQRSPSGRELQWVAKNGEKAFARFAASNYRLV 695 Query: 103 VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQT 162 IARRY N GL DLI+EG LGL+RA++KFD +GF+FSTYATWW+RQ I RA+ + Sbjct: 696 FSIARRYVNNGLDYADLIQEGALGLLRAIQKFDYMKGFKFSTYATWWVRQAITRALADLG 755 Query: 163 RTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSV 222 TIR+P+H+V++ N + AR + D +P+ E+A + D SR L S+ Sbjct: 756 STIRIPVHMVEQQNKLRQAARSFELQNDRKPTISELAAGAEVTEQDASRALGYEYSFLSI 815 Query: 223 DTPLGGDSE-KALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL 281 D L +L ++L DE P D + + ++ L L ++ + RFG+ Sbjct: 816 DKELDPGEGFGSLHNLLVDE-SVAPVDLLIHAEFRGAMNNVLSALPKRESTTIQMRFGIG 874 Query: 282 GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 G + ATL+ +G G+TRER+RQI+ + + LR + QG Sbjct: 875 GQDPATLDHIGDIFGVTRERIRQIEKKTMESLRSSAEVQG 914 >UniRef50_Q1PZV7 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZV7_9BACT Length = 256 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 104/253 (41%), Positives = 162/253 (64%), Gaps = 2/253 (0%) Query: 70 LLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIR 129 +LT EEE+ AR+ +GD +R ++I++NLRLVV IA+ + NRG + LDLIEEGNLGLIR Sbjct: 1 MLTFEEELEIARKVAKGDAEAREKLIKANLRLVVSIAKEFVNRGFSFLDLIEEGNLGLIR 60 Query: 130 AVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKL 189 AVE FD G RFSTYATWWI+Q I RAI N+ R IR+P ++++ ++ + L K Sbjct: 61 AVEDFDITTGNRFSTYATWWIKQAIRRAIANKARIIRIPSYMLQRISQMKHASSGLLKKH 120 Query: 190 DHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK--ALLDILADEKENGPE 247 + PS +EIA ++D +V + + +TS+D PL ++ AL DI + K PE Sbjct: 121 ERSPSEQEIAAEIDITAQNVKNIELSLQSMTSLDAPLVSGADIIWALSDITPNGKTLPPE 180 Query: 248 DTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307 + ++ K+++ K L L+ + V+ R+GL+ E+ TLED+ + + ++RERVRQI+ Sbjct: 181 EGLEETYEKETLKKLLDTLDKRAATVITMRYGLVDGESRTLEDISKILKISRERVRQIEK 240 Query: 308 EGLRRLREILQTQ 320 E +++L ++ + Sbjct: 241 ETIQKLHYLITKE 253 >UniRef50_Q84LK8 Os08g0242800 protein n=5 Tax=Poaceae RepID=Q84LK8_ORYSJ Length = 572 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 83/331 (25%), Positives = 149/331 (45%), Gaps = 41/331 (12%) Query: 35 PSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRAL---------- 84 +DN +E+ G + +L+L + + LTA+EE + + Sbjct: 238 SADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHR 297 Query: 85 ------------------------------RGDVASRRRMIESNLRLVVKIARRYGNRGL 114 R R +M SN RLV+ +AR+Y GL Sbjct: 298 KLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGL 357 Query: 115 ALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKE 174 + DL+++G GL++ EKF+P +G RF TYA WWIRQ+I+++I +R IRLP + Sbjct: 358 DIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYAL 417 Query: 175 LNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKAL 234 L + E + +P+ +A + ++ ++++ + S+ + D Sbjct: 418 LRKVGKARMECIME-GEQPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHVWSDEGVTF 476 Query: 235 LDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGRE 294 +I D P+ + M+Q + +L L+ +++E++ RFG+ E TL +G Sbjct: 477 QEITEDPNVEPPDLSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDM 536 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 GL++ER+RQ+Q L +L+ QG ++ Sbjct: 537 FGLSKERIRQLQNRALEKLKRSASLQGFDVY 567 >UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q7XXT0_ORYSJ Length = 564 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 136/249 (54%), Gaps = 2/249 (0%) Query: 75 EEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKF 134 +E +R G + + RM+ SN+RLV+ IAR + G+ L DLI+EG GLIR EKF Sbjct: 309 DERTLRKRLDHG-IYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKF 367 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D +GFRFSTY+ WWI+Q + +++ Q++ RLP H+V+ + L KL P+ Sbjct: 368 DASKGFRFSTYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPT 427 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDD 254 EEIA P+ V + L + S+D+ +G + ++ AD E+ Sbjct: 428 NEEIAADTGMPIKRVEAAVNLPKYSVSLDSKIGST-DMTYQEVTADPTAETAEEMLNRLS 486 Query: 255 MKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 MK+ + K L L ++R+V+ RFGL TL+++G +G++RER+RQI+ R+LR Sbjct: 487 MKRDVHKALDTLTTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLR 546 Query: 315 EILQTQGLN 323 + L Sbjct: 547 SKKRVNALK 555 >UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TX3_RHOFD Length = 726 Score = 267 bits (684), Expect = 4e-70, Method: Composition-based stats. Identities = 94/312 (30%), Positives = 163/312 (52%), Gaps = 6/312 (1%) Query: 13 EDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLT 72 + E + E+ L+ D L+ + S+ L ++ +L E+ L Sbjct: 294 DAHESTDELSELLSNAELLSGLDFDGALSSDGWNSRRKALASLGLSRGFLLELADFEQLE 353 Query: 73 AEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVE 132 +E +A++ +R +M+ +NL+LV+ IA++Y G L DL++EGN+GLI+AV+ Sbjct: 354 VQESAIEFSQAMQAYRQARDQMVIANLKLVLFIAKKYLYSGQPLDDLLQEGNIGLIKAVD 413 Query: 133 KFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHE 192 ++D RGF+ STYATWWIRQ + R + ++++TIRLP+H+ + A + Sbjct: 414 RYDWRRGFKLSTYATWWIRQQVGRYVADKSKTIRLPVHVYVKTQQIAHAAHAIELATGRM 473 Query: 193 PSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEK--ENGPEDTT 250 P+ EEIA++++ P V+ + P+ +L+ I A + P D Sbjct: 474 PTIEEIAKKMEMPASKVAPLALAIPEPL----PIHDVDVDSLIAIDAQDNYVARDPMDIV 529 Query: 251 QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310 D + SI ++L L K +VL RFG+ +EA TLE++G + +TRER+RQI+ + + Sbjct: 530 SDSQLIGSIDRFLATLKPKDEQVLRLRFGIGAHEAMTLEEIGTRLEVTRERIRQIEAKAI 589 Query: 311 RRLREILQTQGL 322 L+ + + L Sbjct: 590 CHLKHPARLERL 601 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 19/113 (16%) Query: 26 DEKALVEQEPSDNDLAEEELLSQ------GATQRVLDATQLYLGEIGYSPLLTAEEEVYF 79 +++ + EE+ +++ +R D ++Y E + LLTA+EEV Sbjct: 150 PDESFEVVVAPEMTPDEEDTVTEALAFIDNLAERRNDPLRIYQKEFQNATLLTADEEVAL 209 Query: 80 ARRALRGDVASRRRM---------IESNLRLVVKIAR--RYGNRGL--ALLDL 119 + RG + + + + +V A+ R+ + G L D+ Sbjct: 210 GQGMERGVQQALDALAVWPSGIGAVLDAVHMVKSEAKPLRWLSSGPRAELQDI 262 >UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LPW6_HALO1 Length = 465 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 149/245 (60%), Gaps = 3/245 (1%) Query: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140 R A +R +++NLRLVV IARR+ + ++L DLI+EGNLGLI+AVE++D RGF Sbjct: 220 RAAEHAARNARNEFVKANLRLVVSIARRFNHGRMSLADLIQEGNLGLIKAVERYDYRRGF 279 Query: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE 200 RFSTYA+WWIR I RA+ ++ R +RLP+H++ + L+ +L++ L +P++EE++E Sbjct: 280 RFSTYASWWIRHAIGRALADKGREVRLPVHMLDAHHRLLKAQHQLTNTLGRQPTSEELSE 339 Query: 201 QLDKPVDDVSRML-RLNERITSVDTPLGGDSEKALLDILADEKEN--GPEDTTQDDDMKQ 257 + V+ + +M L ++ S+D P+ + +++ ++L D + M Sbjct: 340 AANLSVEKIEKMRTHLLDQALSLDRPMNDEDGRSVAEVLQDPHGEEHSALNVLAQRTMSD 399 Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 + K L L + ++L RRFGL E TL+ +G + L+RER+RQ+Q + L ++R L Sbjct: 400 EVRKTLQTLRPIEADILRRRFGLDNDEELTLKQIGEQYNLSRERIRQLQEQALTKMRVAL 459 Query: 318 QTQGL 322 + + + Sbjct: 460 RRKAM 464 >UniRef50_C7LZI2 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZI2_ACIFD Length = 302 Score = 266 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 99/292 (33%), Positives = 160/292 (54%), Gaps = 1/292 (0%) Query: 22 VEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFAR 81 + + AL + + E + A D+ +L+L ++ PL +A E+V A+ Sbjct: 1 MATKSDSALKQSSRKRRSVQAEVDSALQAAGLGADSIRLFLDDLAKHPLPSAAEQVELAK 60 Query: 82 RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 R GD ++ M+ +NLRLVV ARRY +RG+ L DLI+EG GLIRAVEKFD RGF+ Sbjct: 61 RVREGDEDAKAEMVAANLRLVVHWARRYQDRGVELADLIQEGTFGLIRAVEKFDWRRGFK 120 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 FSTYATWW+RQ+++RA+ N + IRLP+ + REL+ L P+ EEIA Sbjct: 121 FSTYATWWVRQSLQRAVHNHGQAIRLPMEAAERSRRVDNVTRELAADLGRAPTEEEIAMA 180 Query: 202 LDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVK 261 + ++ + + S+D +G + E +L D++ + E+ + ++ + + Sbjct: 181 ANLSASQLADVRHAARVVASLDQAVGPEGETSLGDLVVAQDT-SFEEEVDESISREMLRR 239 Query: 262 WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 + EL+ +R+V+ RFGL G A+LE R +G+ R R+++ L +L Sbjct: 240 AVEELDELERQVVTLRFGLQGDRPASLEATARILGIGPRRARRLEASALAKL 291 >UniRef50_Q5DYR1 RNA polymerase sigma factor n=3 Tax=Aliivibrio RepID=Q5DYR1_VIBF1 Length = 294 Score = 266 bits (681), Expect = 8e-70, Method: Composition-based stats. Identities = 121/284 (42%), Positives = 186/284 (65%), Gaps = 3/284 (1%) Query: 45 LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVK 104 + Q + D+ LYL EI LLTAEEE+ ++R +GDV++R +IESNLRLVVK Sbjct: 7 DMRVCEEQGLNDSYSLYLKEINRYQLLTAEEELAYSRLYKKGDVSARNTLIESNLRLVVK 66 Query: 105 IARRYGNRG---LALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQ 161 +A +Y R LA+LD+IEEGNLGLI+A++KF+PE G+RFSTYA WWIR++IE A+ N Sbjct: 67 VANKYRKRNQTDLAILDIIEEGNLGLIKAIDKFNPELGYRFSTYAVWWIRESIESALFNH 126 Query: 162 TRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITS 221 +RT+RLP+HI KELN YLR ARELS L EPS +I+ ++ VS+++ L + Sbjct: 127 SRTVRLPVHITKELNTYLRAARELSKSLKREPSIRDISTYCEEEQIKVSKIISLIPNQLT 186 Query: 222 VDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL 281 + + ++ ++ K P+ + ++++ ++ W+ LN +++E++ R+GL Sbjct: 187 CHSACSDELSPKFFELSSNNKALEPDSSLSQNNLEMNLSSWIDSLNYREKEIIINRYGLF 246 Query: 282 GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 G + TLED+G+++ L++ERVRQIQ E L +L I + L++E Sbjct: 247 GCKVKTLEDLGKDLDLSKERVRQIQSETLIKLNTIFKKNKLDLE 290 >UniRef50_Q3LW61 Sigma 2 transcription factor n=1 Tax=Bigelowiella natans RepID=Q3LW61_BIGNA Length = 389 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 168/318 (52%), Gaps = 10/318 (3%) Query: 7 KVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLG--- 63 + +L + D + ++ ++K + + + N+ + E + + +L L+L Sbjct: 59 NLDNLFDKQIVDFSYIDELNKKKINLKHKNKNNTSTNESIIMEWVKDLLRWEDLFLKLEN 118 Query: 64 EIGYSPLLTA--EEEVYFARRALRG---DVASRRRMIESNLRLVVKIARRYGNRGLALLD 118 ++G+ P + + + S+ +I+ +L+L++ IA+RY GL+ D Sbjct: 119 KLGFYPTIDFFTKGIIDLTSEIKERLAIGKISKEILIKRSLKLIISIAKRYNGCGLSFED 178 Query: 119 LIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVY 178 LI EG LGL++ + K+D +G +FSTYA WWIRQ+I R+I +Q+R IRLP+++ + L+ Sbjct: 179 LIAEGILGLMKGIRKYDFSKGHKFSTYAHWWIRQSISRSIDDQSRIIRLPVYVKEILSKI 238 Query: 179 LRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKA--LLD 236 + + P+ EEI+ + P+ + ++L + S+D+ + DS + L D Sbjct: 239 NKIKNKFYEDKKRYPTEEEISLLIGIPLKKLRKLLLSCNDLISLDSLIENDSNDSNMLND 298 Query: 237 ILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIG 296 + D K E + +KQ + K L L+ ++ V+ R+GL TLE++G + Sbjct: 299 SIEDSKVINSEVYAIEKSLKQDLNKALLTLSDRESAVIRLRYGLDDGNERTLEEIGEYLN 358 Query: 297 LTRERVRQIQVEGLRRLR 314 +TRER RQI+++ L++L+ Sbjct: 359 VTRERARQIEIKALKKLQ 376 >UniRef50_Q3AYF6 Possible type II alternative RNA polymerase sigma factor n=26 Tax=Cyanobacteria RepID=Q3AYF6_SYNS9 Length = 309 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 103/301 (34%), Positives = 156/301 (51%), Gaps = 36/301 (11%) Query: 57 ATQLYLGEIGYSPLLTAEEEVYFARRAL-----------------------------RGD 87 + +LGEIG LLT E+E+ R+ R Sbjct: 5 SLSAFLGEIGRHQLLTPEQELMLGRKVQAMVAITEPCLIAGGTGPSCEYNDNQRFVIRRG 64 Query: 88 VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147 ++ +MI +NLRLVV +A+RY +GL LLDLI+EG LGL RAVEK+DP RG RFSTYA Sbjct: 65 ERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTYAY 124 Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207 WWIRQ + RA+ Q+RTIR+P+++ ++L + + + E++AE ++ P+ Sbjct: 125 WWIRQGLNRALSTQSRTIRIPVNVNEKLTKLRAAKARIMQRNGLTATGEQLAEFMNVPLT 184 Query: 208 DVSRML--RLNERITSVDTPLGGDSE-KALLDILADEKENGPEDTTQDDDMKQSIVKWLF 264 +V +L L S+ + S+ L+DIL ++ P + + + S+ L Sbjct: 185 EVEDLLACELRSVTVSLQGIVKSKSDPSELVDILPSDEIP-PMERAEIAERSASVWALLS 243 Query: 265 E--LNAKQREVLARRFGLLG-YEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 + L K+ +V+ RFGL G E TL +V R + +RE RQ+ LR+LR+ G Sbjct: 244 KANLTPKEHKVVTLRFGLDGTNEWRTLAEVARHMNCSREYCRQVVQRALRKLRKTGIQSG 303 Query: 322 L 322 L Sbjct: 304 L 304 >UniRef50_A6D4Y7 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1 RepID=A6D4Y7_9VIBR Length = 289 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 120/282 (42%), Positives = 177/282 (62%), Gaps = 3/282 (1%) Query: 44 ELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVV 103 E L++ +R D Y+ ++ LL+ E+E ++A A RGD A+R +IESNLRLVV Sbjct: 6 ERLNKQYEERGTDFYSKYIHDVVGIDLLSPEQEYHYATLARRGDKAARDVLIESNLRLVV 65 Query: 104 KIARRYGNRGLA---LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 KIAR Y RGL+ +LDLIEEGNLGLI+A++KF+PE+GFRFSTYA WWIR++IE ++MN Sbjct: 66 KIARNYTKRGLSNHTILDLIEEGNLGLIKAIDKFEPEKGFRFSTYAVWWIRESIESSLMN 125 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERIT 220 RT+RLP+H++KE+N + E+ L PS +EIAE+ K +S ++ ++ I Sbjct: 126 TGRTVRLPVHVIKEINRLSKQTNEIIADLQRPPSVKEIAEKTAKSQAQISDLIHMSGFIE 185 Query: 221 SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL 280 S + D E L+ E P D ++ + QS+ + L K R+++ RFGL Sbjct: 186 SSSSVDTIDKEFQSLETCKSEAIPEPYDICHNEKLSQSLESVVLSLPEKYRDIVIHRFGL 245 Query: 281 LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 G E TL+++G GL++ERVRQ+Q EG+ +L+ L+ G Sbjct: 246 FGKEVLTLDNLGEMFGLSKERVRQLQQEGISKLQNKLKFDGW 287 >UniRef50_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6A4_9BACT Length = 491 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 92/234 (39%), Positives = 146/234 (62%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 +R+R E NLRLVV IA++Y RG+A DLI+EGN GL+RAV+K+D GF+FSTYATWW Sbjct: 250 ARKRFSEGNLRLVVSIAKKYRKRGMAFHDLIQEGNTGLMRAVDKYDYRMGFKFSTYATWW 309 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 I+Q I RA + RTIR+P+H++ +N A+ + E IA + P+ ++ Sbjct: 310 IKQAIIRATEEKVRTIRIPVHMMDVINKSTYVAKAGQGSSAEKIQLEAIARDTNTPLPEI 369 Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269 R+L++ + S++TP+G D E D + D+K + P Q +K+ I K L L+ + Sbjct: 370 YRLLQITSQPISLETPIGSDGETMFEDFIQDKKIDAPIFLAQRSLLKEQIQKVLDTLSYR 429 Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 +RE++ RFG+ +LE++G+ +TRER+RQI+ LR+L+ ++++ L Sbjct: 430 EREIIKLRFGISDGYTHSLEEIGKRFNITRERIRQIEAIALRKLQHPVRSRKLE 483 Score = 42.8 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 22/41 (53%) Query: 44 ELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRAL 84 E + R D+ +LYL E+ PLLT EE+Y A++ Sbjct: 27 EWNQEEEKSRDYDSVRLYLNEMAKIPLLTPAEEIYLAKKIR 67 >UniRef50_B2KCU1 RNA polymerase sigma factor n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCU1_ELUMP Length = 380 Score = 263 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 100/275 (36%), Positives = 155/275 (56%), Gaps = 4/275 (1%) Query: 52 QRVLDATQLYLGEIGYS-PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG 110 +D+ Y +I L+ EE +R +GD A+++RM+E NLRLV+ A+R+ Sbjct: 2 SENVDSINQYFKKISEVSEDLSREEMEKLWKRIKKGDTAAKQRMMELNLRLVIPAAKRFM 61 Query: 111 NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH 170 + + LLDLIEEGNLGL++A+EKFDP +GFRFSTYA +WI Q I + I Q+ I++P H Sbjct: 62 RKDIDLLDLIEEGNLGLLQAIEKFDPSKGFRFSTYAIYWIDQAIRKYIDEQSGAIKIPSH 121 Query: 171 IVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLR---LNERITSVDTPLG 227 ++ + RT L L+ EPS E++ +LD + +L + I S+ +G Sbjct: 122 AWGDIKKWTRTWNALKDSLEREPSLTEMSRELDWSARKIKSILETINAAKGIDSLALAIG 181 Query: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 + E L D L D+ + P+D +++ L ELN + +E+L R GL E T Sbjct: 182 EEDEVTLEDTLTDDGKGNPDDVFSRSSSNSALLAALEELNPRDKEILMMRNGLKTNEPMT 241 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322 L +V + +GL+RERVRQI+ + +R+ G+ Sbjct: 242 LSEVSKIMGLSRERVRQIEERAISHIRKKAHKLGI 276 >UniRef50_Q6MI57 RNA polymerase sigma factor n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MI57_BDEBA Length = 373 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 93/326 (28%), Positives = 166/326 (50%), Gaps = 15/326 (4%) Query: 8 VHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVL------DATQLY 61 V +L +DA DE EKA D+ EE A D +Y Sbjct: 47 VAELVDDAHSDELRSHEEAEKAYAVPSVEDDLPDVEEDTKTLAVADTSKALTSADPLVMY 106 Query: 62 LGEIGYSPLLTAEEEVYFARRA-LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLI 120 L EI +LT EEE+ A++ D + + ++++NLR VVK+A Y G ++DLI Sbjct: 107 LNEIRRYKVLTREEEMALAKKYFESKDPEAAQALVKANLRFVVKVAAEYSKFGSKMIDLI 166 Query: 121 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHI-VKELNVYL 179 +EGN+GL+ AV +F+P +G R TYA WWIR I+ +M Q +R+ ++L L Sbjct: 167 QEGNVGLMHAVREFNPYKGARLITYAVWWIRGYIQEFLMRQYSMVRIGTTQNQRKLFYQL 226 Query: 180 RTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGDSEKALLDIL 238 + +E + EP+ I+ +L P D+V M +R++ R S+D P+ +S L D+ Sbjct: 227 QKEKEALDAMGIEPNIGLISSRLGIPEDEVRDMTMRMSGRDVSLDRPVDDESGTTLGDLQ 286 Query: 239 ADEKENGPEDTTQDDDMKQSIVKWLF----ELNAKQREVLARRFGLLGYEAATLEDVGRE 294 + ++ ++ + + + + EL+ +++ +L R +L + TL+++G + Sbjct: 287 RGPSDQPLDEALAHNEQLEILKQKIEEIRPELSEREKIILDER--ILNDDPLTLQEIGEK 344 Query: 295 IGLTRERVRQIQVEGLRRLREILQTQ 320 G+TRE VRQ++ +++++ ++ Sbjct: 345 HGITREAVRQMEARLMKKIKAKMEED 370 >UniRef50_C0R0V4 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0R0V4_BRAHW Length = 287 Score = 261 bits (668), Expect = 3e-68, Method: Composition-based stats. Identities = 88/269 (32%), Positives = 151/269 (56%), Gaps = 2/269 (0%) Query: 49 GATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARR 108 + LY + LLT EEE+ +R GD +R ++I SNLR V+ IA++ Sbjct: 10 RTNTEEQNNISLYFADAKKEKLLTREEEIELTKRLKEGDAEARSKLIRSNLRFVITIAKQ 69 Query: 109 YGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP 168 Y N GL L DLI EGNLGLI A ++FDP++G+ F +YA +WIRQ+I RAI ++R IRLP Sbjct: 70 YKNSGLLLEDLISEGNLGLIIAADRFDPDKGYHFISYAVYWIRQSILRAINEKSRLIRLP 129 Query: 169 IHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGG 228 ++ +L R + +K + P E+A L+K +D+ ++ ++ S++ Sbjct: 130 LNKAMDLVDLERAVHQYYYKSGYTPDVNELATILNKDPNDILHIMSMSTEHISLEGEYNY 189 Query: 229 DS-EKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 D + L+D + D+ E+T + ++ + + + L+ +++++ R+G+ E T Sbjct: 190 DGMKDRLIDTIEDKTSKNVEETAINKELMEELKTAIESLSDIEKQIINARYGI-DQERKT 248 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREI 316 L++VG T+ER+RQI+ + LR++ Sbjct: 249 LKEVGEMFSFTKERIRQIEKKALRKMHSQ 277 >UniRef50_C0ZIC6 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZIC6_BREBN Length = 314 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 153/282 (54%), Gaps = 9/282 (3%) Query: 51 TQRVLDATQLYLGEIGYSPLLTAEEEVY-FARRALRGDVASRRRMIESNLRLVVKIARRY 109 + R + L+L + +P+L EEE+ R GD+ +R ++ + LR VV A R+ Sbjct: 29 SLRSDTSALLFLESVAATPMLDKEEELACLIRYQRDGDLEARETIVRAYLRYVVSTALRH 88 Query: 110 GNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 RG+ LDLI+EG +GL A++KFD RG R Y+ WWI Q I RAI ++ IR+P+ Sbjct: 89 LKRGMPFLDLIQEGTIGLFTAIDKFDVGRGVRLYHYSHWWISQAITRAINDKATLIRIPV 148 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGG 228 H+ +++ Y + L H L+ P +EIA LD P++ V + L L ++ S+D L Sbjct: 149 HMHEQIRQYQKQVLHLVHALNRTPDRQEIAVLLDIPLEKVEAIELALMMKMESIDAELDS 208 Query: 229 DSEKALLD-------ILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL 281 + + + + D+ + +D + D++ + L L+ + +E+++ R+GL Sbjct: 209 EKWQTWHEDESLSYAEIMDDGLSSLDDWIEKVDLRSQMRAALDRLSPRAQEIISMRYGLY 268 Query: 282 GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323 + TLE+VG+ GLTRER+RQI+ + RLR + L Sbjct: 269 DDQVYTLEEVGKMFGLTRERIRQIEATTIDRLRTQKASHVLK 310 >UniRef50_A8Z659 RNA polymerase sigma factor rpoD n=5 Tax=Flavobacteriales RepID=A8Z659_SULMW Length = 351 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 87/314 (27%), Positives = 154/314 (49%), Gaps = 49/314 (15%) Query: 57 ATQLYLGEIGYSPLLTAEEEVYFARRALRG------------------------------ 86 + +L EI PLL+ EEE ++A+ A G Sbjct: 33 SLDKFLLEISNIPLLSQEEEFFWAKLARVGYIYNSEIESILKKFKIFKKLKKLNKLKKLK 92 Query: 87 ------------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLI 128 + ++++NLR V+ IA++Y N+GL+L DLI EGN GLI Sbjct: 93 KIKKLTAVLIKKFDKKGIKKYALDNLVKANLRFVISIAKQYQNQGLSLSDLINEGNFGLI 152 Query: 129 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHK 188 + + +FD +GF+ +Y WWIRQ+I +AI ++ R +R P + + N +T +L K Sbjct: 153 KGINRFDERKGFKCISYCVWWIRQSILQAISDKARCVRYPTNKLAFYNKVNKTYSKLEQK 212 Query: 189 LDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPED 248 L PS + I++ L+ DV L + + TS+D PLG L D++ ++ + Sbjct: 213 LKMPPSIKYISDYLNVSEKDVEEALINSIKHTSLDAPLGEGDNSNLYDVIKIDESPKTDH 272 Query: 249 TTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVE 308 + + + ++Q I L L+ ++ +++ +GL + + LE + + LTRER RQI++ Sbjct: 273 SLEKESLQQDIKILLETLSERESQIITLHYGLGCF-SMNLEKIAYLLKLTRERCRQIEMH 331 Query: 309 GLRRLREILQTQGL 322 ++RL++ + + L Sbjct: 332 AIKRLKKSSRKEIL 345 >UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderia RepID=A9ALE2_BURM1 Length = 525 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Query: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143 + + R M+E+NLRLV+ IAR+Y NRG+ L DL+++G +GL+RA+EKF+ RGF+FS Sbjct: 282 QQKVRDATRAMLEANLRLVLSIARKYLNRGVDLSDLVQDGCIGLMRAIEKFEYRRGFKFS 341 Query: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD 203 TYATWWIRQ I RA+ ++ RTIR+P+H+ + R A + +P+ E+A + Sbjct: 342 TYATWWIRQAIARAVADRARTIRVPVHVGDQHQRVRRQALRFRQRTGRQPTPAELAAETG 401 Query: 204 KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL 263 D + +L L S+DTPL D++ L+D++ DE P + M++ + L Sbjct: 402 LAEDKLRAILALPAEPVSLDTPL-PDADTGLVDLIEDETSASPFEQLAGTRMRECVRSLL 460 Query: 264 FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQV 307 + + +VL RRFGL G E T + + ++ G++RERVRQI+ Sbjct: 461 RSVTPTEADVLRRRFGLGGTEPDTYDAIAKDAGMSRERVRQIEK 504 >UniRef50_Q2T2N0 RNA polymerase sigma factor n=32 Tax=pseudomallei group RepID=Q2T2N0_BURTA Length = 483 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 89/231 (38%), Positives = 135/231 (58%) Query: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143 A+ RM E+NLRLV+ IAR+Y +RGL L DL++EGNLGL+RA+EKF+ RGF+FS Sbjct: 237 EARISAATARMAEANLRLVLSIARKYASRGLDLADLLQEGNLGLLRAIEKFEYRRGFKFS 296 Query: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLD 203 TYATWWIRQ I RAI ++ RTIR+P+H+ E + A + + S E++E Sbjct: 297 TYATWWIRQAISRAIADRARTIRVPVHVGDEARRVRKVADRIERRSGARASLAELSEATG 356 Query: 204 KPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWL 263 + + +L L S++ PLG D + DI+ D D M + L Sbjct: 357 LSAERLRAVLMLPREPRSLNAPLGDDDQAEFGDIVEDASTPSLFDALAQGQMCDVVTSLL 416 Query: 264 FELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314 ++A++ ++L RRFG+ G E + E + + G++RE++R+I+ L+ LR Sbjct: 417 KTMSAQEADILRRRFGIGGDEPWSYEQIAAQAGVSREQIRRIEKRALQTLR 467 >UniRef50_Q3M2G3 Sigma-70 n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3M2G3_ANAVT Length = 314 Score = 260 bits (664), Expect = 7e-68, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 144/301 (47%), Gaps = 41/301 (13%) Query: 56 DATQLYLGEIGYSPLLTAEEEVYFARRAL------------------------------- 84 D+ +YL EI P+LT E+E+ AR+ Sbjct: 6 DSVGIYLREISKYPMLTPEQEITLARQVKQMTVVQQHKQVLEEQLHQQLNIQQLAADMGK 65 Query: 85 ---------RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFD 135 R ++ +MI +NLRLVV IA++Y L LDL++EG++GL +AVE+FD Sbjct: 66 SETEVFQILRLGQKAKEKMIAANLRLVVAIAKKYRWSQLEFLDLVQEGSIGLQKAVERFD 125 Query: 136 PERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSA 195 P RG++FST A WWIRQ I +AI N++ TIR P H+ L + REL L EP+ Sbjct: 126 PNRGYKFSTCAYWWIRQEITKAIANKSTTIRTPSHMNDRLIKLKKVQRELVKILGREPNI 185 Query: 196 EEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDM 255 EIAE + + V L S+D P+G + E L+IL + P + + + Sbjct: 186 AEIAEFAELEPNQVRECLIAFRHPLSLDRPMGQEDEVDFLEILPADGT-SPNEYLDEGFL 244 Query: 256 KQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315 +Q + L L Q++VL RFGL + + + + + + + +V Q + ++ L Sbjct: 245 RQDLANCLITLKPLQKQVLMLRFGLGSVDKLSTKQIAERLNIKQAKVGTTQKQAIKVLHR 304 Query: 316 I 316 Sbjct: 305 Q 305 >UniRef50_D1HUY6 Whole genome shotgun sequence of line PN40024, scaffold_64.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HUY6_VITVI Length = 319 Score = 260 bits (664), Expect = 7e-68, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 134/248 (54%) Query: 80 ARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERG 139 + L SR R+ +S RLVV IA RY +GL+L DLI+EG++GL+R E+FDP+RG Sbjct: 72 LDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRG 131 Query: 140 FRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIA 199 ++ STY WWIRQ I RAI N++R IRLP I + + LS +L P+ +EIA Sbjct: 132 YKLSTYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIA 191 Query: 200 EQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 E +D V V + + SVD + L +I+ E P+ + MKQ + Sbjct: 192 EFIDVNVSTVRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEV 251 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 + L L ++ +L FG+ G + E++GR + L+RERVRQI L +LR+ Sbjct: 252 ERALNTLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVV 311 Query: 320 QGLNIEAL 327 L + + Sbjct: 312 DYLKLYMM 319 >UniRef50_C8QXR7 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXR7_9DELT Length = 386 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 95/333 (28%), Positives = 163/333 (48%), Gaps = 11/333 (3%) Query: 6 LKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEI 65 L D E ++ E+F +++ + E ++ S A YL EI Sbjct: 51 LMKKDDPEILPPEDGEAELFGDESAADGETAEFHPLVTLDDSANLPVVGNAALHRYLQEI 110 Query: 66 GYSPLLTAEEEVYFARRALR-GDVASRRRMIESNLRLVVKIARRYGNRGLA-LLDLIEEG 123 LL+ E AR GD + +++ +NLRLVVK+A + + LDLI+EG Sbjct: 111 SQYRLLSRAETDELARLFKETGDPEAAYKLVTANLRLVVKVAMDFQKYWMQNFLDLIQEG 170 Query: 124 NLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP-IHIVKELNVYLRTA 182 N+GL++AV+KFDP R +FS YA +WIR I + IM+ R +++ ++L L Sbjct: 171 NIGLVQAVKKFDPYRQVKFSYYAAYWIRAYILKFIMDNWRLVKIGTTQAQRKLFFSLNKE 230 Query: 183 RELSHKLDHEPSAEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGDSEKALLDILADE 241 ++L +P + +A++L+ +V M R++ S+++P+ DS D L Sbjct: 231 KKLLESQGFKPEPKLLAQRLNVKESEVIEMSQRMDNWDMSLESPMREDSGDERKDFLP-V 289 Query: 242 KENGPEDTTQDDDMKQSIVKWLF----ELNAKQREVLARRFGLLGYEAATLEDVGREIGL 297 E+ D++++ + L LN K+ +L R LL E ATL+++ + Sbjct: 290 AGPSVEERVAADEVREWMAGILDKMRRTLNEKELAILRER--LLSDEPATLQEIADRFAI 347 Query: 298 TRERVRQIQVEGLRRLREILQTQGLNIEALFRE 330 +RERVRQI+ L+++R L+ + +I+ E Sbjct: 348 SRERVRQIEANLLKKMRTYLENEVPDIKEFLDE 380 >UniRef50_A6FGX1 DNA-directed RNA polymerase, sigma subunit n=1 Tax=Moritella sp. PE36 RepID=A6FGX1_9GAMM Length = 294 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 100/280 (35%), Positives = 152/280 (54%), Gaps = 3/280 (1%) Query: 51 TQRVLDATQLYLGEIGYS-PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRY 109 + +A +Y E+ LL+ +EE A A GD A+R MI+SNLRLV+ +A++Y Sbjct: 2 SNITSNALDVYFDELQRFSQLLSKQEEYDTAVAAANGDKAARDTMIQSNLRLVLMVAKKY 61 Query: 110 GNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPI 169 N L ++I+EGN GL+ AV+KFDPERG RFSTYA WWIR IE+ IMN +RTIR+PI Sbjct: 62 QNYSLDWAEIIQEGNTGLMHAVDKFDPERGCRFSTYAVWWIRNNIEQYIMNHSRTIRIPI 121 Query: 170 HIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGD 229 H+ + L+ + EL +D +IA++L V +L S+D + Sbjct: 122 HVTRVYKQILKASSELGLDVDTNEGITKIAQELKISPRKVLNILGHYFNEGSLDKEIHSG 181 Query: 230 SE--KALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287 L D++A E + P+ + D + + L L + + ++ RFG G + + Sbjct: 182 DNLLATLKDLVAAEVDCQPDIRYEKCDYYEYMDALLEYLPVRSQNIIRLRFGFKGQDPMS 241 Query: 288 LEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEAL 327 L+ + + + ++RERVRQI GL ++RE L L E Sbjct: 242 LQAIAQLMDISRERVRQIIRNGLSQVREQLCANDLVKEDF 281 >UniRef50_C4V1Y7 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1Y7_9FIRM Length = 352 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 133/252 (52%), Gaps = 9/252 (3%) Query: 79 FARRALRGDVASRRRMIESNLRLVVKIA----RRYGNRGLALLDLIEEGNLGLIRAVEKF 134 +G++ + + + N +LV K A +RY +R L D+ + G +GLI A +KF Sbjct: 99 LCAMIQQGNLQAEQDLCVKNKKLVDKYALGYEKRYRHR-LDFDDIEQAGFIGLITAAKKF 157 Query: 135 DPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPS 194 D G+ FSTYA WWI+Q I R IM+ IR+P+H+++++ S +L+ E Sbjct: 158 DISMGYSFSTYAVWWIKQAITREIMDHGFVIRIPVHMMEQIIKVAGVENMFS-ELNREER 216 Query: 195 AEEIAEQLDKPVDDVSRMLRLNERIT---SVDTPLGGDSEKALLDILADEKENGPEDTTQ 251 ++ ++ + V + L E + S++ +G D L + L+D+ E+ + Sbjct: 217 IVKVMDETGYKEERVRECMMLKEYVLTYSSLNVTVGEDETVELGEFLSDDGAISIEEMIE 276 Query: 252 DDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLR 311 + ++++ + L L K+++V+ RFGL TLE+VG+ +TRER+RQI+ + LR Sbjct: 277 NKELRRMLDDVLNTLTEKEKKVIKLRFGLEDNRQWTLEEVGKLFNVTRERIRQIESKALR 336 Query: 312 RLREILQTQGLN 323 +LR + + Sbjct: 337 KLRHPSRLHNIK 348 >UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6FX97_9DELT Length = 421 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 136/241 (56%), Gaps = 8/241 (3%) Query: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149 S+ + +++NLRLVV IARR+ + + L DL++EGNLGL++AV++FDP RG+RFSTYATWW Sbjct: 180 SKNKFVKANLRLVVTIARRFDHGLMPLQDLVQEGNLGLMKAVDRFDPTRGYRFSTYATWW 239 Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209 IR I RA+ N+ RT+RLP H+ +L R REL K P+ E++A+ V Sbjct: 240 IRHAINRALANKGRTVRLPAHVSADLQRLRRVTRELEAKTGETPTPEQLAQAAGLSKTRV 299 Query: 210 SRMLRLNERI-TSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNA 268 ++ +L S+D P D + LLD L D D + + + + L+ L Sbjct: 300 RKLSKLTLDPTVSLDAPSHDDDARGLLDRLEDASVPVAADILEHQALNEHLRDALYNLQP 359 Query: 269 KQREVLARRFGLL-------GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG 321 + ++L RR+G+ +E TL +G L+RER+RQ+Q L +LR + Sbjct: 360 IELDILKRRYGIATSEAESVDFEPMTLRQLGERHSLSRERIRQLQERALTKLRREFARRE 419 Query: 322 L 322 L Sbjct: 420 L 420 >UniRef50_UPI0001BC2D98 RNA polymerase, sigma 32 subunit, RpoH n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2D98 Length = 903 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 111/337 (32%), Positives = 163/337 (48%), Gaps = 56/337 (16%) Query: 4 NTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLG 63 L DL + + DE K +V + +D+D +E L S D +YL Sbjct: 532 PPLLAEDLPDQSGADEQPA----SKKIVLVKDADDDEPQELLRSVT---DTDDLLGVYLK 584 Query: 64 EIGYSPLLTAEEEVYFARRALRG---------------------------DVASRRRMIE 96 +IG PLL+A EEV A+R G A+ M+ Sbjct: 585 QIGQYPLLSAAEEVAVAKRIEAGMYATHVLSLGQYQTRRERRALEWVKADGAAAYEEMVT 644 Query: 97 SNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIER 156 SNLRLVV IA+R+ L LLDLI+EGNLGL+RAV+KFD +G +FSTYATWWIRQ I+R Sbjct: 645 SNLRLVVSIAKRFNRSKLDLLDLIQEGNLGLVRAVQKFDYTKGNKFSTYATWWIRQGIDR 704 Query: 157 AIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLN 216 I + +TIRLPIH+ ++ + + R +E D V + LR+ Sbjct: 705 GIGDTAKTIRLPIHLFEKASEFWNCMR-----------DDESRAACDHDHSKVEQALRM- 752 Query: 217 ERITSVDTPL-------GGDSEKALLDILADEK--ENGPEDTTQDDDMKQSIVKWLFELN 267 + S++ L +S + D +AD + PE D ++ +++ + L Sbjct: 753 -QPVSLEGYLELQWDGHYAESLMSFDDRIADPDVFTDNPETKIVDGELLETVNSVVDSLP 811 Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQ 304 A++ E++ RRFG G TL+ +G +TRER+RQ Sbjct: 812 AREAEIIRRRFGWNGEPPQTLDAIGNRFAVTRERIRQ 848 >UniRef50_Q8LK21 Chloroplast RNA polymerase sigma factor, c n=4 Tax=Chlamydomonas reinhardtii RepID=Q8LK21_CHLRE Length = 752 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 134/241 (55%), Gaps = 6/241 (2%) Query: 77 VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136 V + + ++ +++SN +LV+ + + + +G + DL+ EG GL++ VEK+D Sbjct: 477 VESLKLRYDAGLKAKELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDA 536 Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196 +GFRF TYA WWIRQ + R++ R +RLP+H++++L + +L +L EP+ Sbjct: 537 TKGFRFGTYAHWWIRQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAREPTLP 596 Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADE---KENGPEDTTQDD 253 E+A+ PV V ++ S+DTP+GG+ L + D + ++ D Sbjct: 597 ELAKAAGLPVTRVQMLMETARSAASLDTPIGGNE---LGPTVKDSVEDEREAADEEFGSD 653 Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313 ++ + L EL ++ V+ RFGL + TLE++G + +TRER+RQI+ + LR+L Sbjct: 654 SLRNDMEAMLLELPEREARVVRLRFGLDDGKEWTLEEIGEALNVTRERIRQIEAKALRKL 713 Query: 314 R 314 R Sbjct: 714 R 714 >UniRef50_B8DKK5 RNA polymerase sigma factor n=11 Tax=Proteobacteria RepID=B8DKK5_DESVM Length = 474 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 102/324 (31%), Positives = 166/324 (51%), Gaps = 15/324 (4%) Query: 12 NEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLL 71 ++D+ + + A E + + L D+ LYL EI PLL Sbjct: 152 DDDSPPARHDAH---DGADASDESAGRHRSLPVLRPAMPGASTRDSLHLYLREISRFPLL 208 Query: 72 TAEEEVYFARRALR-GDVASRRRMIESNLRLVVKIARRYGNRGLA-LLDLIEEGNLGLIR 129 +EE ARR GD + R++ S+LRLVVKIA + R + +LDLI+EGN+GL+R Sbjct: 209 KPDEEFDLARRVQEQGDSDAAFRLVTSHLRLVVKIAMDFQRRWMQNVLDLIQEGNVGLMR 268 Query: 130 AVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLP-IHIVKELNVYLRTARELSHK 188 AV KFDPE+G +FS YA +WI+ I + IM+ R +++ ++L L R+ Sbjct: 269 AVNKFDPEKGIKFSYYAAFWIKAYILKFIMDNWRMVKIGTTQAQRKLFYNLNKERQRLIA 328 Query: 189 LDHEPSAEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGD-SEKALLDILADEKENGP 246 ++P A ++E+L+ V+ V M RL+ S+D +G D +D L G Sbjct: 329 QGYDPDATILSEKLNVTVEQVIEMEQRLDSSDMSLDITVGEDSGGATRMDFLPALG-PGI 387 Query: 247 EDTTQDDDMKQSIVK----WLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERV 302 E+T + ++ + + L +L+ K+ +L R LL + TL ++G + +TRERV Sbjct: 388 EETLANSEIARMVQDRVQTILPKLSDKEAYILQHR--LLSEQPVTLREIGEKYDITRERV 445 Query: 303 RQIQVEGLRRLREILQTQGLNIEA 326 RQI+ L++LR+ L + + + Sbjct: 446 RQIEARLLQKLRDHLFKEIRDFSS 469 >UniRef50_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella patens RepID=A9SW01_PHYPA Length = 677 Score = 256 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 95/333 (28%), Positives = 162/333 (48%), Gaps = 50/333 (15%) Query: 42 EEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRG--------------- 86 + E + + V D YL EI LLT +EEV+ +++ G Sbjct: 341 KGERVRRVKFDGVQDYLTTYLREITKINLLTKQEEVFLSKKLRIGLNLLEERKKLAAELG 400 Query: 87 -------------------------DVASRRRMIESNLRLVVKIARRYGNRGLALLDLIE 121 +R +M+ +NLRLVV +A++Y + GL + DLI+ Sbjct: 401 YVPSNEEWAPHMNLSVGDLVRKLGEAEWARDKMVMANLRLVVSVAKQYHSFGLEMADLIQ 460 Query: 122 EGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRT 181 EG++GL+R VEKFD RG++ STY WWIRQ + RAI + +RT+RLP+H+ L + Sbjct: 461 EGSIGLLRGVEKFDHTRGYKLSTYVHWWIRQGVTRAIADHSRTVRLPVHVHDTLGRIRKA 520 Query: 182 ARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLG-----GDSEKALLD 236 L + S +EI+E + + L++ +++ S+D +G + L Sbjct: 521 KSTLLSE-GCTASVQEISEATNLTGTKIKNTLQVTKKLVSLDKEIGRNTLQSGDGETLHS 579 Query: 237 ILADEK-ENGPEDTTQDDDMKQSIVKWL-FELNAKQREVLARRFGLLGYEA--ATLEDVG 292 ++AD EN P + MK + K L +L ++R+++ +G+ + +LE + Sbjct: 580 LVADRDIENQPWTIVERMLMKDDVDKLLTSQLGPRERDIVRLHYGVGREDGSVMSLESIS 639 Query: 293 REIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 G++RERVRQ++ +R+L+ + QGL+ Sbjct: 640 YRYGVSRERVRQLETAAMRKLQIKSREQGLDRY 672 >UniRef50_A8L2N7 RNA polymerase, sigma 28 subunit, FliA/WhiG family n=95 Tax=Actinomycetales RepID=A8L2N7_FRASN Length = 376 Score = 256 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 117/242 (48%), Gaps = 13/242 (5%) Query: 85 RGDVA---SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFR 141 GD R +++ +L LV +ARR+ NRG L DL++ +GLI++V++FDPERG Sbjct: 143 EGDPERAALRDQLVRMHLPLVEYLARRFRNRGEPLDDLVQVATIGLIKSVDRFDPERGVE 202 Query: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 FSTYAT I I+R ++ IR+P + + + ELS L P+ EIA Sbjct: 203 FSTYATPTIVGEIKRHFRDKGWAIRVPRRLQELKLSLTKATSELSQSLGRSPTVSEIARH 262 Query: 202 LDKPVDDVSRMLRLNE--RITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 L+ ++V L S+D P GD E + +++ + + ++S+ Sbjct: 263 LEMSEEEVLEGLESANAYSAVSLDAPDSGDDEAP----AVADTLGVQDESLEGVEYRESL 318 Query: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQT 319 L +L +++ +L RF + T + E+G+++ V ++ L +LR L Sbjct: 319 KPLLEKLPPREKRILLLRF----FGNMTQSQIANELGISQMHVSRLLARTLAQLRRGLLE 374 Query: 320 QG 321 G Sbjct: 375 DG 376 >UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KLN9_CYAP7 Length = 308 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 92/304 (30%), Positives = 148/304 (48%), Gaps = 46/304 (15%) Query: 58 TQLYLGEIGYSPLLTAEEEVYFARRAL--------------------------------- 84 YL LL + +E+ ++ Sbjct: 11 LDSYLKNFTRYELLNSSQEIDLGQKIQKWQKLKHQFVQFQKKTGKKTSVFDFCSDFQLEE 70 Query: 85 -------RGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137 ++ ++++ NLRLV+ +A++Y RGL+ DL++EGN+GLIRA E F+P Sbjct: 71 AEFYLVYEEGQQAKNQLVQGNLRLVINLAKKYLGRGLSFEDLLQEGNIGLIRAAELFEPS 130 Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197 +G++FSTYA WWIRQ I RAI N RTIRLP+HI+ LN +T +L+ +L P+ +E Sbjct: 131 KGYKFSTYAYWWIRQQIIRAINNSARTIRLPVHIIARLNRIKKTQHKLAAQLGRTPTVQE 190 Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257 IA L ++ + + ++ S+ T + + L D++AD P D + + Sbjct: 191 IATSLQMSAQEIEKYREVAQKTISLSTIVDEQGRETLQDLIADPN-PQP-DFLERVFSYE 248 Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREIL 317 I++ + L + +++L +R YE TLE +G L++ERVRQI + L RLRE Sbjct: 249 QILEKMETLPPRYQDILKKR----IYEEQTLEAIGTSTKLSKERVRQIFQKALSRLREEF 304 Query: 318 QTQG 321 Sbjct: 305 LKDN 308 >UniRef50_A6F9J5 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70region 1.2 n=3 Tax=Moritella sp. PE36 RepID=A6F9J5_9GAMM Length = 284 Score = 256 bits (655), Expect = 8e-67, Method: Composition-based stats. Identities = 110/266 (41%), Positives = 156/266 (58%), Gaps = 3/266 (1%) Query: 52 QRVLDATQLYLGEIGYS-PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYG 110 +A +Y+ ++ S LLT EEE A + GD +R+RMI+SNLRLV+ IA+RY Sbjct: 4 SNESNALDVYMYQVNQSSKLLTKEEEYETAMASNEGDEKARQRMIQSNLRLVINIAKRYQ 63 Query: 111 NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH 170 + L L+D+I+EGN GLI AVEKFD +GFRFSTYA WWI+ IER IMNQ+RTIR+PIH Sbjct: 64 HTSLPLVDIIQEGNTGLIHAVEKFDATKGFRFSTYAVWWIKNNIERFIMNQSRTIRVPIH 123 Query: 171 IVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPL--GG 228 I K L+TARE L +AE L+ V+ +L S+D + Sbjct: 124 IGKVYKRILKTAREQELDLQCNHDVMTLAEFLEMQYAQVNEVLSYYFNEASLDKTIVTDR 183 Query: 229 DSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATL 288 DS AL+D+L D P D +D D + + L L+ + R+++ RFGL + TL Sbjct: 184 DSSTALVDMLEDYSICKPNDELEDADTLCYLNEVLGHLSERDRKIIELRFGLGEEDPLTL 243 Query: 289 EDVGREIGLTRERVRQIQVEGLRRLR 314 +G + ++RER+RQI L++++ Sbjct: 244 HVIGERLSMSRERIRQIINLSLQKIQ 269 >UniRef50_C6XTP2 RNA polymerase sigma factor n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XTP2_PEDHD Length = 286 Score = 256 bits (655), Expect = 8e-67, Method: Composition-based stats. Identities = 85/285 (29%), Positives = 154/285 (54%) Query: 41 AEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR 100 +E + + T R D+ YL EI PLL AEEE+ +R GD + +R++ SNLR Sbjct: 1 MKEIRIERSITNRSQDSLARYLQEISKYPLLDAEEEIVLGKRIKEGDWDALQRLVSSNLR 60 Query: 101 LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN 160 VV +A++Y + L+L DLI +GN+GLI+A E+FD +RGF+F +YA WWIRQ+I + + Sbjct: 61 FVVTVAKKYESPDLSLADLISDGNIGLIKAAERFDEKRGFKFISYAVWWIRQSILQGMNT 120 Query: 161 QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERIT 220 R + LP+ + + R+ +L +L P EE+A + + V L ++ Sbjct: 121 SKRMVHLPMSQISGIRQVKRSEIKLEQELQRIPCREELAGFMKTAEEVVYDYLYISGSQV 180 Query: 221 SVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGL 280 S+D P G + I+ +K P+ + + + +++ + + + L+ ++R +L +G+ Sbjct: 181 SLDAPTEGQDGVLIPCIVQYDKGPAPDASLERESLEKDVQRMMDILSPRERSILFLAYGM 240 Query: 281 LGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE 325 +D+ +GL+ E +R+ + + L RLR + + + + Sbjct: 241 GNNRPLQNDDISTLLGLSTETIRRSKNKALDRLRGLKEIKMMRRY 285 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.173 0.513 Lambda K H 0.267 0.0531 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,434,946,487 Number of Sequences: 3077464 Number of extensions: 146129468 Number of successful extensions: 663166 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2656 Number of HSP's successfully gapped in prelim test: 3692 Number of HSP's that attempted gapping in prelim test: 648396 Number of HSP's gapped (non-prelim): 11039 length of query: 330 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 201 effective length of database: 643,403,500 effective search space: 129324103500 effective search space used: 129324103500 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 94 (40.4 bits)