BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (325 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P37344 Psp operon transcriptional activator n=175 Tax=B... 666 0.0 UniRef50_C4UFM7 Psp operon transcriptional activator n=2 Tax=Bac... 422 e-117 UniRef50_C5BML9 Psp operon transcriptional activator n=71 Tax=Pr... 408 e-112 UniRef50_B6IU17 Psp operon transcriptional activator n=28 Tax=Pr... 379 e-104 UniRef50_Q2NC18 Transcriptional regulator n=2 Tax=Proteobacteria... 336 6e-91 UniRef50_Q2G974 Transcriptional regulator, Fis family / DNA-bind... 334 3e-90 UniRef50_Q30WC5 Transcriptional regulator, Fis family / DNA-bind... 331 2e-89 UniRef50_Q0BX28 Psp operon transcription activator n=15 Tax=Prot... 328 2e-88 UniRef50_C6XR63 Sigma54 specific transcriptional activator, PspF... 325 1e-87 UniRef50_A5VAH2 Sigma54 specific transcriptional regulator, Fis ... 315 1e-84 UniRef50_B8DM98 Sigma54 specific transcriptional acivator, PspF,... 294 3e-78 UniRef50_D0LIJ2 Two component, sigma54 specific, transcriptional... 287 4e-76 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 250 4e-65 UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria... 248 1e-64 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 248 2e-64 UniRef50_Q30YU4 Two component transcriptional regulator, Fis fam... 247 4e-64 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 243 5e-63 UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional... 241 2e-62 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 238 2e-61 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 238 2e-61 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 238 2e-61 UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 ... 238 2e-61 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 237 5e-61 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 236 6e-61 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 236 7e-61 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 236 7e-61 UniRef50_A8USY5 Two component, sigma54 specific, transcriptional... 236 8e-61 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 235 1e-60 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 235 1e-60 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 235 1e-60 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 234 2e-60 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 234 3e-60 UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis ... 234 3e-60 UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulato... 234 4e-60 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 233 6e-60 UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax... 233 6e-60 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 233 8e-60 UniRef50_Q7UK84 Probable two-component response regulator n=1 Ta... 233 9e-60 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 232 1e-59 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 232 1e-59 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 232 1e-59 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 232 1e-59 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 232 1e-59 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 232 2e-59 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 232 2e-59 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 232 2e-59 UniRef50_Q6ARB9 Probable two-component system response regulator... 231 2e-59 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 231 3e-59 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 231 3e-59 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 230 4e-59 UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing p... 230 5e-59 UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphapro... 229 8e-59 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 229 8e-59 UniRef50_Q46PB6 Helix-turn-helix, Fis-type n=7 Tax=Burkholderiac... 229 9e-59 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 229 1e-58 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 229 1e-58 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 229 1e-58 UniRef50_B3PJX0 Sigma54-dependent transcriptional regulator n=2 ... 229 1e-58 UniRef50_A6DPB0 Response regulator of hydrogenase 3 activity (Se... 229 1e-58 UniRef50_A7HIN1 Two component, sigma54 specific, transcriptional... 229 1e-58 UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-bind... 229 1e-58 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 229 1e-58 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 228 2e-58 UniRef50_B8DJ26 Two component, sigma54 specific, transcriptional... 228 2e-58 UniRef50_A5G2R6 Two component, sigma54 specific, transcriptional... 228 2e-58 UniRef50_B8J0D0 Sigma54 specific transcriptional regulator, Fis ... 228 2e-58 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 228 2e-58 UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidat... 228 2e-58 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 228 2e-58 UniRef50_Q5P474 Phenol-degradation regulator n=11 Tax=Betaproteo... 228 2e-58 UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator ... 228 2e-58 UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis ... 228 3e-58 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 227 3e-58 UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional... 227 4e-58 UniRef50_C9YE96 Transcriptional regulatory protein xylR n=1 Tax=... 227 4e-58 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 227 4e-58 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 227 4e-58 UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spir... 227 4e-58 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 227 4e-58 UniRef50_Q01W56 Sigma54 specific transcriptional regulator, Fis ... 227 5e-58 UniRef50_A6CG13 Ornithine decarboxylase inhibitor-putative sigma... 226 6e-58 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 226 6e-58 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 226 6e-58 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 226 6e-58 UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria... 226 7e-58 UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putativ... 226 9e-58 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 225 1e-57 UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovib... 225 2e-57 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 225 2e-57 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 225 2e-57 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 225 2e-57 UniRef50_C1DCJ9 Probable transcriptional regulatory protein n=1 ... 224 2e-57 UniRef50_B2JEB5 Two component, sigma54 specific, transcriptional... 224 2e-57 UniRef50_Q6ALT7 Related to two-component system response regulat... 224 2e-57 UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis ... 224 2e-57 UniRef50_B9M6T3 Sigma54 specific transcriptional regulator, Fis ... 224 3e-57 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 224 3e-57 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 224 3e-57 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 224 3e-57 UniRef50_UPI0001927093 PREDICTED: hypothetical protein n=1 Tax=H... 224 3e-57 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 224 3e-57 UniRef50_C4XJ05 Fis family transcriptional regulator n=2 Tax=Des... 224 4e-57 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 224 4e-57 UniRef50_A8V246 Two component, sigma54 specific, transcriptional... 224 4e-57 UniRef50_Q48J06 Sigma-54 dependent transcriptional regulator n=5... 224 4e-57 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 224 4e-57 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 224 5e-57 UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-ty... 224 5e-57 UniRef50_Q3A103 Two component, sigma54 specific, transcriptional... 223 5e-57 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 223 5e-57 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 223 5e-57 UniRef50_C6PZ60 Putative sigma54 specific transcriptional regula... 223 6e-57 UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis ... 223 6e-57 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 223 6e-57 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 223 6e-57 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 223 7e-57 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 223 7e-57 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 223 7e-57 UniRef50_A7JYI2 Transcriptional regulator n=10 Tax=Vibrionaceae ... 223 8e-57 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 223 8e-57 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 223 8e-57 UniRef50_Q8L387 EugR n=4 Tax=Proteobacteria RepID=Q8L387_9PSED 223 8e-57 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 223 8e-57 UniRef50_P17899 Transcriptional regulatory protein flbD n=24 Tax... 223 8e-57 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 223 9e-57 UniRef50_C5CF13 Two component, sigma54 specific, transcriptional... 223 9e-57 UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional r... 223 9e-57 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 223 1e-56 UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=De... 223 1e-56 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 222 1e-56 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 222 1e-56 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 222 1e-56 UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desu... 222 1e-56 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 222 1e-56 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 222 1e-56 UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing p... 222 2e-56 UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteob... 222 2e-56 UniRef50_A1VJQ6 Sigma54 specific transcriptional regulator, Fis ... 221 2e-56 UniRef50_A3EU11 Putative sigma54 specific transcriptional regula... 221 2e-56 UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-... 221 2e-56 UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltap... 221 3e-56 UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, pu... 221 3e-56 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 221 3e-56 UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis F... 221 3e-56 UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis ... 221 3e-56 UniRef50_Q3A7M8 Putative two component response regulator n=1 Ta... 221 3e-56 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 221 4e-56 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 221 4e-56 UniRef50_Q6FC38 Putative sigma-54 dependent transcriptional regu... 221 4e-56 UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional... 220 4e-56 UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein... 220 5e-56 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 220 5e-56 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 220 5e-56 UniRef50_B3QUF0 Two component, sigma54 specific, transcriptional... 220 6e-56 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 220 6e-56 UniRef50_D2R4Q9 Sigma54 specific transcriptional regulator, Fis ... 220 6e-56 UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 ... 220 6e-56 UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulato... 220 6e-56 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 220 7e-56 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 220 7e-56 UniRef50_B9M2U3 Two component, sigma54 specific, transcriptional... 219 7e-56 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 219 7e-56 UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis F... 219 7e-56 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 219 7e-56 UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis F... 219 8e-56 UniRef50_A7HFT7 Sigma54 specific transcriptional regulator, Fis ... 219 8e-56 UniRef50_C8R2Q7 Sigma54 specific transcriptional regulator, Fis ... 219 9e-56 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 219 9e-56 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 219 9e-56 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 219 1e-55 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 219 1e-55 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 219 1e-55 UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1... 219 1e-55 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 219 1e-55 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 219 1e-55 UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sen... 219 1e-55 UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum ... 219 1e-55 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 218 2e-55 UniRef50_Q01QL4 Sigma54 specific transcriptional regulator, Fis ... 218 2e-55 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 218 2e-55 UniRef50_C1SI14 Transcriptional regulator containing GAF, AAA-ty... 218 2e-55 UniRef50_D0MD30 Sigma54 specific transcriptional regulator, Fis ... 218 2e-55 UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desu... 218 2e-55 UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein Pi... 218 2e-55 UniRef50_A5G9N8 GAF modulated sigma-54 specific transcriptional ... 218 2e-55 UniRef50_C6HYQ1 Two component, sigma54 specific, transcriptional... 218 2e-55 UniRef50_Q01NN5 Two-component response regulator CbrB n=1 Tax=Ca... 218 2e-55 UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional... 218 2e-55 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 218 2e-55 UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 ... 218 3e-55 UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing pr... 218 3e-55 UniRef50_A4CAI4 Sigma-54 dependent DNA-binding response regulato... 218 3e-55 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 218 3e-55 UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum ... 218 3e-55 UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis F... 217 3e-55 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 217 4e-55 UniRef50_B4SRV8 Nitrogen metabolism transcriptional regulator, N... 217 4e-55 UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator ... 217 4e-55 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 217 4e-55 UniRef50_A6LFT4 Two-component system response regulator n=16 Tax... 217 4e-55 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 217 4e-55 UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis ... 217 6e-55 UniRef50_A3EQP7 Putative two component, sigma54 specific, transc... 217 6e-55 UniRef50_C3QKR8 Two-component system response regulator n=19 Tax... 217 6e-55 UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 ... 216 6e-55 UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis ... 216 6e-55 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 216 6e-55 UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis ... 216 7e-55 UniRef50_A0L4D4 Two component, sigma54 specific, transcriptional... 216 7e-55 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 216 7e-55 UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator ... 216 7e-55 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 216 7e-55 UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis F... 216 8e-55 UniRef50_Q1MPA8 Response regulator containing CheY-like receiver... 216 8e-55 UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional... 216 8e-55 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 216 8e-55 UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n... 216 8e-55 UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional... 216 8e-55 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 216 9e-55 UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional... 216 9e-55 UniRef50_Q1IMW7 Two component, sigma54 specific, transcriptional... 216 9e-55 UniRef50_Q2INT5 Two component, sigma54 specific, transcriptional... 216 9e-55 UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis F... 216 9e-55 UniRef50_C6JPX9 PAS modulated sigma54 specific transcriptional r... 216 9e-55 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 216 1e-54 UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3... 216 1e-54 UniRef50_Q0F179 Putative transcriptional regulator, Fis family p... 216 1e-54 UniRef50_D0KWC0 Transcriptional regulator, NifA subfamily, Fis F... 216 1e-54 UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional... 216 1e-54 UniRef50_UPI00016A7B7E two component, sigma54 specific, transcri... 216 1e-54 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 216 1e-54 UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pi... 216 1e-54 UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-ty... 216 1e-54 UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verru... 216 1e-54 UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional... 216 1e-54 UniRef50_C1A568 Putative NtrC family two-component response regu... 216 1e-54 UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional... 216 1e-54 UniRef50_C7LP58 Two component, sigma54 specific, transcriptional... 216 1e-54 UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis... 215 1e-54 UniRef50_Q9K4U8 Nitric oxide reductase transcription regulator n... 215 1e-54 UniRef50_D2R4F1 Sigma54 specific transcriptional regulator, Fis ... 215 1e-54 UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator,... 215 1e-54 UniRef50_C7I4S2 Two component, sigma54 specific, transcriptional... 215 2e-54 UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=1... 215 2e-54 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 215 2e-54 UniRef50_Q12HA0 Sigma54 specific transcriptional regulator with ... 215 2e-54 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 215 2e-54 UniRef50_Q88RJ6 Alginate biosynthesis transcriptional regulatory... 215 2e-54 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 215 2e-54 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 214 2e-54 >UniRef50_P37344 Psp operon transcriptional activator n=175 Tax=Bacteria RepID=PSPF_ECOLI Length = 325 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/325 (100%), Positives = 325/325 (100%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF Sbjct: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL Sbjct: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR Sbjct: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH Sbjct: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY Sbjct: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 NQKRAAELLGLTYHQFRALLKKHQI Sbjct: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 >UniRef50_C4UFM7 Psp operon transcriptional activator n=2 Tax=Bacteria RepID=C4UFM7_YERRU Length = 244 Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust. Identities = 202/243 (83%), Positives = 221/243 (90%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 M+E +NLLGEAN+F+EVLEQVS LA L+KPVL+IGERGTGKELIA RLHYLS RWQGPF Sbjct: 1 MSEQLENLLGEANAFIEVLEQVSGLAKLNKPVLVIGERGTGKELIAHRLHYLSDRWQGPF 60 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 ISLNCAALNENLLDSELFGHEAGAFTGAQKRH GRFERADGGTLFLDELATAPM+VQEKL Sbjct: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHLGRFERADGGTLFLDELATAPMLVQEKL 120 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRVIEYG LERVGGSQPLQV+VRLVCATN +LPA+ EG FRADLLDRLAFDVVQLPPLR Sbjct: 121 LRVIEYGHLERVGGSQPLQVDVRLVCATNDNLPALAAEGKFRADLLDRLAFDVVQLPPLR 180 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 R+ DIML+AE+FA+QMCRE+ L LFPGFT +A+ LL Y WPGN+RELKNVVERSVYRH Sbjct: 181 HRQQDIMLLAEHFAMQMCRELGLALFPGFTAQAKNQLLGYHWPGNVRELKNVVERSVYRH 240 Query: 241 GTS 243 G + Sbjct: 241 GDN 243 >UniRef50_C5BML9 Psp operon transcriptional activator n=71 Tax=Proteobacteria RepID=C5BML9_TERTT Length = 383 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/340 (58%), Positives = 251/340 (73%), Gaps = 21/340 (6%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 L+GE+NSFLEVLEQVSHL L++PVL++GERGTGKELIA RLH+LS RW P + +NCA Sbjct: 41 TLIGESNSFLEVLEQVSHLTSLNRPVLVVGERGTGKELIAERLHFLSERWSRPLVKMNCA 100 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ALN+ LL+SELFGHEAGAFTGA K+H GRFERADGGTLFLDELAT + QEKLLR IEY Sbjct: 101 ALNQELLESELFGHEAGAFTGASKKHIGRFERADGGTLFLDELATMSLQTQEKLLRFIEY 160 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE ER+GGS + V+VRLV ATN LP + ++G FR DLLDRLAFDVV LPPLR R+ DI Sbjct: 161 GEFERLGGSSTIDVDVRLVAATNEHLPTLADKGRFRHDLLDRLAFDVVTLPPLRARQEDI 220 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +L+AE++A+ MC+E+ PLF GFT AR L Y+WPGN+RELKNV+ERS+YRHG ++ P Sbjct: 221 VLLAEHYALNMCKELHRPLFTGFTHEARMLLEEYQWPGNVRELKNVIERSIYRHGDNEDP 280 Query: 247 LDDIIIDPF-----------KRRPPEDAIAVSETT----------SLPTLPLDLREFQMQ 285 ++DI+ DPF K P + I E+ S+ PLD++E Q Sbjct: 281 IEDILFDPFDSPYAPLEPHSKGVPQQHTIPQVESAPIVGPGDPQPSVHHFPLDIQEHLQQ 340 Query: 286 QEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 QEK+ L+ +LQ+ ++NQ+ AA+LL L+YHQ R LKK+ + Sbjct: 341 QEKDCLRAALQKAQFNQREAAKLLRLSYHQLRGKLKKYHL 380 >UniRef50_B6IU17 Psp operon transcriptional activator n=28 Tax=Proteobacteria RepID=B6IU17_RHOCS Length = 374 Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/345 (55%), Positives = 246/345 (71%), Gaps = 26/345 (7%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +L+G+A +F ++E VS A L++P L+IGERGTGKEL+A+RLHYLS RW PF+ LNCA Sbjct: 9 SLIGQAPAFTALMEHVSQAAALNRPTLVIGERGTGKELVAARLHYLSPRWDRPFVKLNCA 68 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL+E LL++ELFGHEAGAFTGAQKRH GRFE ADGGTLFLDE+ATA + VQEK+LR+IEY Sbjct: 69 ALSETLLETELFGHEAGAFTGAQKRHVGRFELADGGTLFLDEIATASLRVQEKILRIIEY 128 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE ERVGG+Q L V+VR+V ATNADLP + +EG FRADLLDRL FDV+ +PPLR R DI Sbjct: 129 GEFERVGGTQTLSVDVRVVGATNADLPRLADEGKFRADLLDRLCFDVLTIPPLRARPEDI 188 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 ++AE+FA+ M +E+ P FPGF A++ LL Y WPGN+RELKNVVER+VYR SD Sbjct: 189 PILAEHFAVAMVKELGKPFFPGFAPHAQQRLLAYPWPGNVRELKNVVERAVYRAPESDRA 248 Query: 247 LDDIIIDPFKR--RPPEDAI----------AVSETTSLPTLPLDLREFQMQQ-------- 286 +++I+ DPF+ RP + AI A T + P P D E Sbjct: 249 IEEIVFDPFRSPWRPTQMAIYDTAPATPPGATPVTVAQPPTPGDGVERLWPADGGACDFL 308 Query: 287 ------EKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 EK LL+ +L++ +++QKRAA LGL YHQFR L+K+++ Sbjct: 309 GKVADFEKALLRTALERNQFHQKRAAADLGLNYHQFRGYLRKYEL 353 >UniRef50_Q2NC18 Transcriptional regulator n=2 Tax=Proteobacteria RepID=Q2NC18_ERYLH Length = 346 Score = 336 bits (862), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 166/338 (49%), Positives = 228/338 (67%), Gaps = 15/338 (4%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 E + +G++ +FL+ +E+ S AP+ +P+LIIGERGTGKELIA RLH LS RW P + Sbjct: 2 ERGNQFVGQSTAFLDAVERASRAAPMQRPILIIGERGTGKELIAERLHRLSPRWGEPLVI 61 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAAL E L+++ELFGHEAGAFTGA + GRFE AD GTLFLDEL T M QE+LLR Sbjct: 62 MNCAALPETLIEAELFGHEAGAFTGATRAREGRFEEADKGTLFLDELGTLSMAAQERLLR 121 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 +EYGE+ R+G S+P+ V+VR+V ATN DLP + EGTFRADLLDRL+F+V+ LPPLR R Sbjct: 122 AVEYGEVTRIGSSRPVNVDVRIVAATNEDLPRLAEEGTFRADLLDRLSFEVITLPPLRVR 181 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + D+ ++ EYF +M E+ +PGF ++ L +Y WPGN+REL+NVVER+VYR + Sbjct: 182 DGDVGVLTEYFGRRMAAELAWEGWPGFAPHVQKELEDYAWPGNVRELRNVVERAVYRWDS 241 Query: 243 SDYPLDDIIIDPF------------KRRPPEDAIAVSETTSLPTLPL---DLREFQMQQE 287 + P+ + DPF KR D + T+ PTL L DLR + E Sbjct: 242 WEEPIGYVQFDPFESPWKPLPGEAAKRDKSTDFRDAVDQTARPTLDLDCDDLRGAVDEHE 301 Query: 288 KELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + +++ +L + ++NQ++ A+ LGLTY Q R +KKH + Sbjct: 302 RAIIEHALGKHRWNQRQTAKALGLTYDQLRHCIKKHGL 339 >UniRef50_Q2G974 Transcriptional regulator, Fis family / DNA-binding protein Fis n=5 Tax=Proteobacteria RepID=Q2G974_NOVAD Length = 353 Score = 334 bits (856), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 164/332 (49%), Positives = 224/332 (67%), Gaps = 13/332 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +G++ +FL+ +E+ S AP+ +PVL+IGERGTGKELIA RLH LS+RWQ P +++NCA Sbjct: 18 QFIGQSGAFLDAVERASRAAPMRRPVLVIGERGTGKELIAERLHRLSTRWQEPLVTMNCA 77 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E L+++ELFGHEAGAFTGA + GRFE AD GTLFLDEL T M QE+LLR +EY Sbjct: 78 ALPETLIEAELFGHEAGAFTGATRSRVGRFEEADRGTLFLDELGTLSMGAQERLLRAVEY 137 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE+ R+G S+P++V+VR+V ATN DLP M +G FRADLLDRL+F+V+ LPPLR RE DI Sbjct: 138 GEVTRIGSSKPVRVDVRIVAATNEDLPRMAEQGRFRADLLDRLSFEVITLPPLRVREGDI 197 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 ++A+YF +M E+ +PGF + + + Y WPGN+REL+N VER+VYR P Sbjct: 198 AVLADYFGRRMAAELHWDAWPGFAPQTQRAMEEYPWPGNVRELRNAVERAVYRWDDWSTP 257 Query: 247 LDDIIIDPFKR--RPPEDAIA-VSETTSLPTLP----------LDLREFQMQQEKELLQL 293 + + DPF+ +P A +E+ S PT DLR E+ +++ Sbjct: 258 IAHVQFDPFESPWKPTASTRADTAESESAPTPRSAGPHDFDGVSDLRAAVDAHERAIIEH 317 Query: 294 SLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 L + +YNQ++ A+ LGLTY Q R +KKH + Sbjct: 318 HLGRNRYNQRQTAKALGLTYDQLRHCMKKHGL 349 >UniRef50_Q30WC5 Transcriptional regulator, Fis family / DNA-binding protein Fis n=2 Tax=Desulfovibrio RepID=Q30WC5_DESDG Length = 362 Score = 331 bits (848), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 173/344 (50%), Positives = 228/344 (66%), Gaps = 31/344 (9%) Query: 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 LG ++ FL E VS A +++PVL++GERGTGKEL A+RLHYLSSRWQGP ++LNCAA+ Sbjct: 15 LGSSDVFLAFQEHVSRAAKVERPVLLLGERGTGKELAATRLHYLSSRWQGPLVTLNCAAI 74 Query: 69 NENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 + L++SELFGHE+GAFTGA+++ GRFE+A GGTLFLDE+ P +QEK+LRV+EYG Sbjct: 75 SPALMESELFGHESGAFTGAERQRRGRFEQAHGGTLFLDEIGNMPPAMQEKILRVVEYGV 134 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 ERVGGS ++ +VR+V ATN DL M + G F+ DLLDRLAF+V+ LPPLRER DIML Sbjct: 135 FERVGGSHAVETDVRIVAATNVDLARMADAGRFKRDLLDRLAFEVLTLPPLRERGEDIML 194 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLD 248 +A FA M E+ P P FT A L N+ WPGN+RELKN VER+V+ SD L Sbjct: 195 LARRFAASMAAELGRPETPRFTPHAEAALKNHSWPGNVRELKNTVERAVFH---SDGALI 251 Query: 249 DII-IDPF-----------------------KRRPPEDAIAVSET----TSLPTLPLDLR 280 D I DPF + P+ +T +S+P L + L+ Sbjct: 252 DTIETDPFVSPWRQGLAAPYPEHHGTENPDPPSQRPQAPCPQGDTAPFPSSVPDLSIPLQ 311 Query: 281 EFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 E+E L+ +L++ ++NQ++AAELLGLTYHQFR L +KH+ Sbjct: 312 RAAHALEQEYLRAALERTRHNQRQAAELLGLTYHQFRGLFRKHK 355 >UniRef50_Q0BX28 Psp operon transcription activator n=15 Tax=Proteobacteria RepID=Q0BX28_HYPNA Length = 368 Score = 328 bits (840), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 178/356 (50%), Positives = 224/356 (62%), Gaps = 42/356 (11%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+GE+ ++L LEQ S +APLD+ VL+IGERGTGKEL+ RLH+LS RW+GPFI +NCAA Sbjct: 8 LIGESAAWLSALEQASRVAPLDRSVLVIGERGTGKELVGERLHFLSKRWEGPFIKVNCAA 67 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L+E LLDSELFGHE GAFTGA GRFE ADGGT+FLDE+ATA VQEKLLR++EYG Sbjct: 68 LSETLLDSELFGHERGAFTGATDMRRGRFEMADGGTIFLDEIATASQQVQEKLLRIVEYG 127 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E +RVGGS+ L NVR+V ATNADLPA+ G FR DLLDRL+FDV+ LPPLR R+ D Sbjct: 128 EFQRVGGSKVLSTNVRIVAATNADLPALAEAGAFRWDLLDRLSFDVITLPPLRARQGDKT 187 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A++FA +M E+ FPGF A E + + WPGNIREL+N ER +R S P Sbjct: 188 LLAQFFARRMAVEMAQD-FPGFAPSALEAIEAWHWPGNIRELRNFAERLTHRALIS-APF 245 Query: 248 DDI-----IIDPF------KRRPPEDAIAVSETT----------------SLPTLPLDLR 280 + + +DPF K P +ET+ S P+ +L+ Sbjct: 246 EQVRFETSALDPFASPWRPKNAPKSSPKNSNETSNEAGKNSNGVGVFLGASSPSSAAELQ 305 Query: 281 EFQMQQ-------------EKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKH 323 + Q E +L+ +L +Q RAA+ LGLTYHQ R LLKKH Sbjct: 306 PAERPQSPARGFEDAVRLFEMQLIDGALADAGGHQGRAADALGLTYHQLRGLLKKH 361 >UniRef50_C6XR63 Sigma54 specific transcriptional activator, PspF, Fis family n=2 Tax=Proteobacteria RepID=C6XR63_HIRBI Length = 391 Score = 325 bits (834), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 174/344 (50%), Positives = 226/344 (65%), Gaps = 29/344 (8%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G++ ++LE LE+VS AP+++P+L++GERGTGKELIA R+H+LS RW GPF+ +NCAA Sbjct: 8 LIGQSQAWLESLERVSLAAPIERPLLVVGERGTGKELIAERVHFLSKRWDGPFVKVNCAA 67 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L+E+LLDSELFGHE GAFTGA KR GRFE+AD GTLFLDE+ATA M VQEKLLRVIEYG Sbjct: 68 LSEDLLDSELFGHEQGAFTGATKRRLGRFEQADKGTLFLDEIATASMEVQEKLLRVIEYG 127 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E +R+GG + L +VR+V ATN DLP+ N+G FRADLLDRLAFDV+ L PLR R DI Sbjct: 128 EFQRLGGEEVLHCDVRVVGATNVDLPSRANDGRFRADLLDRLAFDVITLAPLRARGEDIA 187 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP- 246 +AEYF +M RE+ +FPGF+ A + WPGN+RELKN ER+VYR P Sbjct: 188 ELAEYFGNKMARELGF-VFPGFSRGAIAAFKAHDWPGNVRELKNASERAVYRDLAMRAPH 246 Query: 247 -------LDDIIIDPFKR--RPPED--AIAVSETTSLPT----------------LPLDL 279 L+ +DPF RP + ++ +PT P+D Sbjct: 247 EIDVPVNLNMDALDPFASGFRPAVELGGEGQNKQQQIPTEEIDYLGEALEHHNSHAPIDF 306 Query: 280 REFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKH 323 + E+ L+ + +QK AE LGL+Y+QFR LL+K+ Sbjct: 307 EKQTAAFEQRLIDDAFAACGGHQKNTAEHLGLSYNQFRGLLRKY 350 >UniRef50_A5VAH2 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=A5VAH2_SPHWW Length = 349 Score = 315 bits (808), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 162/343 (47%), Positives = 221/343 (64%), Gaps = 20/343 (5%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 E + +G++ +FL+ +E+ S A L++PVL+IGERGTGKEL+A RLH LSSRW GP + Sbjct: 2 EREAQFIGQSLAFLDSVERASRAAALNRPVLVIGERGTGKELVAERLHRLSSRWDGPLVV 61 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAAL E L+++ELFGHEAGAFTGA K GRFE ADGGTLFLDELAT QE+LLR Sbjct: 62 MNCAALPETLIEAELFGHEAGAFTGATKARVGRFEEADGGTLFLDELATLSTGAQERLLR 121 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 +EYGE+ R+G S+P++V+VR+V ATN LP +V++G FRADLLDRL+F+V+ LPPLR R Sbjct: 122 AVEYGEVTRIGASRPVRVDVRIVAATNEHLPGLVDQGRFRADLLDRLSFEVITLPPLRVR 181 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 E D+ ++A++F +M E+ P +PGF A L + WPGN+REL+NVVER+VYR Sbjct: 182 EGDVPVLADHFGRRMAAELGWPYWPGFGPAAAGELARHDWPGNVRELRNVVERAVYRWED 241 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPL--------------------DLREF 282 + P+D I DPF A + D R Sbjct: 242 PERPIDAIEFDPFDSPWRPAAARPVAPPRIDDGEAPATPAGPAAAPSAAPPAGCEDFRGA 301 Query: 283 QMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + EK LL+ +L++ ++NQ+ A L L+Y Q R L++H + Sbjct: 302 VLLYEKALLEDALRRCRFNQRATAVALKLSYDQLRHALRRHDL 344 >UniRef50_B8DM98 Sigma54 specific transcriptional acivator, PspF, Fis family n=6 Tax=Proteobacteria RepID=B8DM98_DESVM Length = 434 Score = 294 bits (753), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 142/231 (61%), Positives = 178/231 (77%) Query: 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 +G++++FL E +S +A +D+PVL+ GERGTGKEL A+RLHYLS RWQGP + L+CAAL Sbjct: 17 IGQSDAFLAFQEALSRVARVDRPVLLAGERGTGKELAAARLHYLSPRWQGPLVVLDCAAL 76 Query: 69 NENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 L ++ELFGHEAGAFTGA R GRFERADGGTLFLDE+ P VQ+KLLRV+EYG Sbjct: 77 APTLAEAELFGHEAGAFTGAAARRAGRFERADGGTLFLDEVGNIPAGVQDKLLRVVEYGM 136 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 LERVGG+QP++V+ R+V ATNADLPAMV G FRADLLDRL+F+V+ +PPLRER D++L Sbjct: 137 LERVGGTQPVRVDARVVAATNADLPAMVARGLFRADLLDRLSFEVLAVPPLRERGDDVIL 196 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 +A +FA M E+ LP P A LL + WPGN+REL+N VER+V R Sbjct: 197 LARHFAASMAAELDLPDTPELAPAALAQLLAHPWPGNVRELRNAVERAVAR 247 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 29/40 (72%) Query: 285 QQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 Q E L+ +L + ++N++ AAELLG++Y QFR L ++H+ Sbjct: 390 QLELSALRAALDRARHNRRVAAELLGISYDQFRGLYRRHR 429 >UniRef50_D0LIJ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIJ2_HALO1 Length = 484 Score = 287 bits (734), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 150/319 (47%), Positives = 208/319 (65%), Gaps = 4/319 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + +V+ +V +AP+ +PVL++GERGTGKEL+A +H+LS R PF+++NCA Sbjct: 163 QIVGASEPLSKVMAKVERVAPVPRPVLVLGERGTGKELVARAIHHLSPRSNQPFVTINCA 222 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E+LL+SELFGHE GAFTGA KR G+FE ADGGTLFLDE+ M Q K+LRV+EY Sbjct: 223 AVPESLLESELFGHEEGAFTGATKRKEGKFELADGGTLFLDEIGNMSMEFQAKILRVLEY 282 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERV G+ +QV+VR++ ATNAD+ A + G FR DL DRLAF+V+ LPPLRER D+ Sbjct: 283 QRFERVAGAASIQVDVRVIAATNADVRAQMQRGAFRRDLYDRLAFEVIHLPPLRERMDDV 342 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +A YF Q ++ + A + L Y +PGN+RELKNVVER++Y ++ Sbjct: 343 PALAAYFLSQFREDVAGVRVDEISADALDRLAAYDYPGNVRELKNVVERALYMASSAILG 402 Query: 247 LDDI--IIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 +DI + P + E A A++ P LPL R E+ L + +L++ +YNQK Sbjct: 403 AEDIESALPPERSDATEAATALAGFRDDPALPLSERVDAF--ERALCKDALERTRYNQKE 460 Query: 305 AAELLGLTYHQFRALLKKH 323 AA LLGLTY QFR +K+ Sbjct: 461 AAALLGLTYDQFRQRYRKY 479 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 250 bits (639), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 142/329 (43%), Positives = 205/329 (62%), Gaps = 20/329 (6%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + S +E L V + D VL+ GE GTGKEL++ +HY S R GPF++LNCA Sbjct: 152 NIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELVSRAIHYNSDRKCGPFVALNCA 211 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENLL+SELFG+E GAFTGA+K GRFE A GGT FLDE++ VQ K+LR+IE Sbjct: 212 AIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGGTFFLDEISEMSAAVQAKVLRIIES 271 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ELER+GG+ ++V+VR++CATN DL MV EG FR DL R++ + LP LRER DI Sbjct: 272 KELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDDLYYRISVFPIMLPALRERSGDI 331 Query: 187 MLMAEYFAIQMCREI-KLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY--RHG-- 241 + ++++F ++ K P+ + + L+ ++W GNIREL+N++ER+V ++G Sbjct: 332 IPLSKHFVNHFSAKMGKTPIV--LSSEVEKILIKHKWEGNIRELQNIIERAVILCKNGVI 389 Query: 242 -TSDYPLDDIIIDPFKRRPPEDAIAVSETTS----LPTLPLDLREFQMQQEKELLQLSLQ 296 T P I+ + PPE +S+ S +P L L + EK+L+ +L+ Sbjct: 390 RTEHLPTS--IVHGYT--PPELNENISQNNSVNFDIPPNGLSLDDL----EKQLVAKALE 441 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + K N +AA+LLGLT FR L+K+ I Sbjct: 442 RSKNNITKAAKLLGLTRGTFRYRLQKYGI 470 >UniRef50_B3U4Q6 Nif-specific regulatory protein n=3 Tax=Bacteria RepID=B3U4Q6_9BACT Length = 517 Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 140/315 (44%), Positives = 200/315 (63%), Gaps = 12/315 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G ++SF +V++ + +AP D VL++GE GTGKE++A LH LS R PFI +NCAA Sbjct: 198 VVGTSSSFRKVVDLLKAVAPTDTTVLLLGETGTGKEVLAQALHDLSLRCHKPFIRVNCAA 257 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L L++SELFGHE GAFTGAQ R GRFE A GTLFLDE+ P+ Q KLLRV++ G Sbjct: 258 LPSGLIESELFGHERGAFTGAQLRRAGRFELAHTGTLFLDEIGEMPLETQAKLLRVLQDG 317 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ++R+GG+QP+ V+VRLV ATNADL A V +GTFRADL RL + LPPLR+R DI Sbjct: 318 MVDRIGGTQPVAVDVRLVAATNADLQAAVRQGTFRADLFYRLHIFPIALPPLRDRREDIH 377 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A++F + ++K F ++ LL Y WPGN+REL+NV+ER+V G+S + Sbjct: 378 LLAQHFLALIGGKLKRAHL-AFDPQSMARLLTYNWPGNVRELQNVIERAVILSGSSQVTV 436 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 D++++ P A+ ++ +L DL + + + E + + Y ++ AA Sbjct: 437 DEMLL------PVVQAVHSPSSSLPVSLG-DLERYHIIEVLEQTKWRI----YGEQGAAH 485 Query: 308 LLGLTYHQFRALLKK 322 LLGL R+ L+K Sbjct: 486 LLGLNPETLRSRLRK 500 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 144/318 (45%), Positives = 195/318 (61%), Gaps = 22/318 (6%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +++ ++G S V +QV +A + VLI+GE GTGKELIAS +HY S R P + L Sbjct: 207 FENMVVGHTASMRRVFDQVRRVAKWNSTVLILGESGTGKELIASAIHYNSPRAHQPLVRL 266 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAAL E LL+SELFGHE GAFTGA K+ GRFE+ADGGTLFLDE+ M Q KLLRV Sbjct: 267 NCAALPETLLESELFGHEKGAFTGAVKQRKGRFEQADGGTLFLDEIGEISPMFQAKLLRV 326 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ GELERVGGSQ ++VNVR+V ATN DL V +G FR DL RL +++PPLRER Sbjct: 327 LQEGELERVGGSQTVKVNVRIVAATNRDLEHEVEQGKFREDLYYRLNVMAIRVPPLRERS 386 Query: 184 SDIMLMAEYF----AIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 +DI +AE+ A Q R++KL T+ A L+++RWPGN+REL+N +ERS Sbjct: 387 ADIPELAEFLLDKIARQQGRKLKL------TDSALRLLMSHRWPGNVRELENCLERSAIM 440 Query: 240 HGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLP-LDLREFQMQQEKELLQLSLQQG 298 D + + + T L +P +DL + + ++E + +L+Q Sbjct: 441 SEDGTISRDVVSLTGLDH----------DATPLAPVPEVDLADDSL-DDRERVIAALEQA 489 Query: 299 KYNQKRAAELLGLTYHQF 316 + Q +AA LLG+T Q Sbjct: 490 GWVQAKAARLLGMTPRQI 507 >UniRef50_Q30YU4 Two component transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=Q30YU4_DESDG Length = 465 Score = 247 bits (631), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 138/328 (42%), Positives = 192/328 (58%), Gaps = 17/328 (5%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ V V +APLD VLI GE GTGKEL++ L LS R PF+ +NCAA Sbjct: 143 IIGDSAPMRAVKTLVEKVAPLDSTVLITGESGTGKELVSDTLRALSGRAGAPFVKVNCAA 202 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E+L ++ELFGHE GAFTGA PG+FE A GGTL LDE+ P +Q KLLR +E Sbjct: 203 IPEHLFENELFGHEKGAFTGATSAQPGKFELAHGGTLLLDEIGDMPAAIQPKLLRAVEEK 262 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ++ER+GG +P+ VNVR++ ATN +L +V FR DL RL V+ LPPLR+R+ DI Sbjct: 263 QIERLGGRRPVAVNVRIIAATNQNLRELVARKAFREDLYYRLGVAVIMLPPLRDRKEDIP 322 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +AE+ ++ + +P+ G T A + L+N+ WPGN+R+L N++ER+ Sbjct: 323 RLAEHILRKLGLTLGIPVH-GITAAAVQALMNHHWPGNVRQLANLLERAAI-SAQGRITA 380 Query: 248 DDIII----------DPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQ 297 DI P + P DA A + +P LRE Q E+ LL +L++ Sbjct: 381 QDIAAALAVQNGTSPQPCTAQSPHDAPAAEDCLRMP-----LRETLHQMERNLLLEALRR 435 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 + +QK AA LLGLT A L+KHQI Sbjct: 436 AEGSQKNAAALLGLTPKNMWAKLQKHQI 463 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 131/309 (42%), Positives = 194/309 (62%), Gaps = 12/309 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G + + + + +AP VLI+GE GTGKEL+A +HY S R PF++L+CAA Sbjct: 144 LVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKELVAHAIHYRSERAGKPFVALHCAA 203 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L+E +L+SELFGHE GAFTGA + GRFE ADGGTLFLDELA + VQ KLLRV+E G Sbjct: 204 LSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTLFLDELAEMSLKVQVKLLRVLEKG 263 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG + ++V+VR + ATN +L V+EG FR DL RL +Q+PPLRER+ DI Sbjct: 264 EFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFREDLFYRLNVINIQMPPLRERKDDIP 323 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +++ YFA++ ++ GF A + LL++ W GNIREL+N +ER++ + + Sbjct: 324 ILSNYFAVKYAKK-YKKEIKGFDPEAIKALLSHHWQGNIRELQNTIERAIVLCKSDTISV 382 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 D + PE + +E +P + + + + EKE++Q +LQ +++ AA+ Sbjct: 383 DHL---------PESIMPDNEY--IPVIKIPIGTTLKEAEKEIIQRTLQITNGSKQSAAK 431 Query: 308 LLGLTYHQF 316 +LG++ + Sbjct: 432 ILGISTRKI 440 >UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJU0_DESAA Length = 443 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 134/306 (43%), Positives = 192/306 (62%), Gaps = 11/306 (3%) Query: 19 LEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 LE V +A VLI GE GTGKEL A ++HY SSR F+++N AAL E LL+SELF Sbjct: 146 LEVVDSVADSKAAVLISGESGTGKELFARQIHYSSSRKDKNFVAVNVAALPETLLESELF 205 Query: 79 GHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPL 138 GHE GAFTGA R G+FE A GGTL LDE+ + +Q KLLRV++ E++RVGG+ P+ Sbjct: 206 GHEKGAFTGAINRKIGKFELASGGTLLLDEITEMDIGLQAKLLRVLQESEVDRVGGTSPV 265 Query: 139 QVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMC 198 V+VR+V TN D+ + +G FR+DL RLA ++LPPLRER SD++L+AE+F I+ Sbjct: 266 NVDVRVVATTNRDVEQAIADGKFRSDLYYRLAVIPLKLPPLRERSSDVILLAEHF-IRKY 324 Query: 199 REIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFKRR 258 G T+ A+ TLLN WPGN+REL+N +ER+V +D+ ++P Sbjct: 325 NARDGKNVKGLTKNAQNTLLNLDWPGNVRELENTIERAVLLCKGDQIDHNDLFMEP---- 380 Query: 259 PPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRA 318 PP A+ + S+P++ LRE E++++ +L Q + N+ AA++LG++ R Sbjct: 381 PPPKALPRQD--SIPSVSTTLREM----EEQMIYQALDQTEGNRTHAAQILGISVRTLRN 434 Query: 319 LLKKHQ 324 L ++Q Sbjct: 435 KLNEYQ 440 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 140/319 (43%), Positives = 191/319 (59%), Gaps = 6/319 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + + +VL V AP VLI GE GTGKELIA +HY S R PF+S+NC Sbjct: 144 KIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGKELIARAIHYTSPRKDNPFVSVNCM 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ALN +L+SELFGHE G+FTGA GRFE+ADGGTLFLDE+A +Q KLLRV++ Sbjct: 204 ALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGGTLFLDEIAELTPDLQVKLLRVLQE 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVGG + ++V++R+V ATN DL AMV +GTFR DL RL + LPPLRER DI Sbjct: 264 RRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFRDDLYYRLNVVQIPLPPLRERREDI 323 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F ++C + +P F+ A L Y WPGNIR+L+NVVE + + Sbjct: 324 PLLVAHFVDKVCTDNTMPA-KTFSTEALNYLTGYEWPGNIRQLENVVESCLVLVPGTVIN 382 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 +D++ P + R E S LP + LDL + + E L++ +L + Q +AA Sbjct: 383 VDNL---PAEIRDEESQFK-SAVDLLP-VQLDLADTLEKIEAALIRRALVRADLVQVKAA 437 Query: 307 ELLGLTYHQFRALLKKHQI 325 E LG++ + LKK+ I Sbjct: 438 EYLGISKSLLQYKLKKYAI 456 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 116/232 (50%), Positives = 162/232 (69%), Gaps = 1/232 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+++G+++ L +L+ +S +AP D VLI GE GTGKE +A +H LS R PF+ +NC Sbjct: 336 DSMVGQSHLMLNILDLISQVAPSDTSVLITGESGTGKEHVADTIHQLSPRKSKPFVKVNC 395 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL NL++SELFGHE GAFTGA +R GRFE+ADGGT+FLDE+ P+ VQ KLLRV++ Sbjct: 396 AALPINLIESELFGHEKGAFTGATERRIGRFEQADGGTIFLDEIGDMPLEVQVKLLRVLQ 455 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ERVGG+QP+++N+R++ ATN +L + EG FR D+ RL + +P LRER D Sbjct: 456 QREIERVGGTQPIKINIRVITATNRNLERAIAEGKFRLDIYYRLNVFPIAMPALRERTED 515 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 I + +F R+ + G ++RA L++Y WPGNIREL+NV+ERSV Sbjct: 516 IAPLVHHFIGYFGRKTGKNI-SGISDRALAMLMDYGWPGNIRELENVIERSV 566 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/346 (43%), Positives = 195/346 (56%), Gaps = 28/346 (8%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D +G + S V QV +AP VL+ GE GTGKELIA ++ LS R PF+S+NC Sbjct: 200 DWAIGRSASMQHVFAQVHQVAPARTTVLLRGESGTGKELIARAIYRLSPRKDQPFVSVNC 259 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL E LL+SELFGHE GAFTGAQ + GRFE A GGTLFLDE+ Q KLLRV++ Sbjct: 260 AALTETLLESELFGHEKGAFTGAQTQRKGRFELAHGGTLFLDEIGDISPSFQAKLLRVLQ 319 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVGG+ P++V+VRL+ ATN +L MV EG FRADL R+ + LPPLRER D Sbjct: 320 EREFERVGGTTPVRVDVRLIVATNRNLEQMVREGEFRADLYYRINVVSIVLPPLRERRED 379 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVER--SVYRH--- 240 I MA+YF + RE L F E A L + WPGN+REL+N +ER ++ H Sbjct: 380 IPEMAQYFLNRFNRENGRALH--FNEEALRVLSSCYWPGNVRELENCIERTATMAHHDTI 437 Query: 241 GTSDY--PLDDIIIDPFKRRPPEDA--------IAVSETTSLPT-----------LPLDL 279 G S + +D + EDA + VS ++P L + Sbjct: 438 GRSSFLCEIDQCLTKVLHHLEREDAVRPARPSDVTVSNALNVPAKFGAPERDAGGLGMHS 497 Query: 280 REFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 E + E+E L ++++ + Q +AA LLG+T Q L+KH I Sbjct: 498 GEHIPEDERERLLWAMERCGWVQAKAARLLGITARQIGYALRKHGI 543 >UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 Tax=Proteobacteria RepID=A0L6X2_MAGSM Length = 550 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 137/313 (43%), Positives = 189/313 (60%), Gaps = 9/313 (2%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 LLG+A S +V+ A D VL++GE GTGKEL+A+ +HY S+R PF+ +NCA+ Sbjct: 227 LLGKAASMKQVVNMALKAAQFDSTVLVLGESGTGKELVANTVHYNSARASRPFVKVNCAS 286 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L++NLL+SELFGHE GAFTGA GRFE ADGGTLFLDE+ Q KLLRV++ G Sbjct: 287 LSDNLLESELFGHEKGAFTGAIATRKGRFEMADGGTLFLDEIGEISPSFQAKLLRVLQEG 346 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG++ ++VNVR+V ATN DL A V +G FRADL RL +++P LRER D+ Sbjct: 347 EFERVGGARTIKVNVRVVAATNRDLSAEVQKGNFRADLFYRLHVLPIEIPALRERMEDLP 406 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+ E ++ + PL T+ A L+ Y W GN+REL+N +ER+ Sbjct: 407 LLTEALLERISTKQHRPL--SITKEALRRLMMYEWAGNVRELENCLERAAVLSDEGHIDA 464 Query: 248 DDIIIDPFKRRPPEDA-----IAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 II R P A I + + +LP+ DL + + +E+E + +L+Q + Q Sbjct: 465 SHIIFSSGANREPMPALTNHRIHNASSCALPS-SADLSDPTL-EERERVMGALEQSGWVQ 522 Query: 303 KRAAELLGLTYHQ 315 +AA LLG+T Q Sbjct: 523 AKAARLLGMTPRQ 535 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 237 bits (604), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 135/320 (42%), Positives = 179/320 (55%), Gaps = 11/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +NL+G+ E+ E +S +A VLI GE GTGKELIAS +H S+R PFI +NC Sbjct: 144 ENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTGKELIASAIHAKSTRKDKPFIQINC 203 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL E L+ SELFGHE GAFTGA R G FE+A GGTLFLDE+ Q LLR++E Sbjct: 204 AALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGGTLFLDEIGDISPTTQVSLLRILE 263 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 G +RVGG++ ++ +VRL+CATN DL A E FR DL RL +Q PPLR+R SD Sbjct: 264 LGTFQRVGGTETIKADVRLICATNRDLAAAAREKQFREDLYYRLNVVSLQAPPLRDRRSD 323 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ YF + C + G T A L NY WPGN REL N++E +V Sbjct: 324 IPLLVRYFLERYC-SLNNKQIDGVTRDAMTLLCNYDWPGNCRELANIIEHAVIFSRGRTL 382 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D + P + R D + T +L T L E L++ L++ +N K+A Sbjct: 383 DKDSL---PSQIR-TSDRHSSGLTLNLATATL------ADAESALIKKVLEESNWNLKKA 432 Query: 306 AELLGLTYHQFRALLKKHQI 325 AELL + ++K+ + Sbjct: 433 AELLDIARGTLYGKMEKYHL 452 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 144/328 (43%), Positives = 190/328 (57%), Gaps = 26/328 (7%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G++ V + + ++ VLI GE GTGKEL+A +HY S R PF+++ C Sbjct: 167 NIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELVARAIHYNSDRHDRPFVAIYCG 226 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENLL+SELFGHE GAFTGA ++ G FE ADGGTLFLDE+A P M+Q KLLRVI+ Sbjct: 227 AIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTLFLDEIAELPPMMQVKLLRVIQE 286 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E +VGG++ L+V+VRLV ATN DL V E FR DL RL V LPPLR+R DI Sbjct: 287 HEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDLYYRLNVIQVGLPPLRDRREDI 346 Query: 187 MLMAEYFAIQMCREIKLPLFPGFT----ERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 L+ +F + L PGF+ + L+Y WPGNIREL+N VER V G Sbjct: 347 PLLVSHFLQK--------LTPGFSTTIPDGVMRRFLDYHWPGNIRELENTVERCVVLGGK 398 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSET-----TSLPTLPLDLREFQMQQEKELLQLSLQQ 297 + D + PP + +S T T LP LDL ++ EK++L +L + Sbjct: 399 GEITEDSL--------PPH-MLCISGTGDQQLTELPEEGLDLDDYLGAIEKDILLKALDR 449 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 +KRAAELL +T+ R L K I Sbjct: 450 TGGVRKRAAELLHITFRSIRYRLAKFGI 477 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 236 bits (603), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 131/317 (41%), Positives = 188/317 (59%), Gaps = 10/317 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G++ L+VL+ V P + VLI GE GTGKELIA +HY S R PFI++NC Sbjct: 140 DGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIARAIHYNSPRKDKPFIAINC 199 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ + L++SELFG+E GAFTGA R G E AD GTLFLDE+A P+ Q KLLRV++ Sbjct: 200 AAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFLDEIAEIPLSTQSKLLRVLQ 259 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ ++G +V+VR++ ATN +L V + FR DL RL V++PPLRER+ D Sbjct: 260 DKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLYYRLKVITVEIPPLRERKED 319 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + +F + +E G E+A E LLNY WPGNIREL++V+ER++ Sbjct: 320 IPDLVHFFIEKYSKEFG-KRVNGIEEKALEALLNYSWPGNIRELESVIERAIIICEKDKI 378 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 +D I D + P++ + +P ++ E EKEL++ +L + + +A Sbjct: 379 TFND-IQDELRVITPKNLFDI----DIPDEGINYEEL----EKELIKKALIKSNFVIAKA 429 Query: 306 AELLGLTYHQFRALLKK 322 A LLG++Y F LKK Sbjct: 430 ARLLGMSYDTFWYRLKK 446 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 236 bits (602), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 137/329 (41%), Positives = 194/329 (58%), Gaps = 17/329 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G++ + EVL +V +AP + VL+ GE GTGKEL+A +H SSR PF+ +NCA Sbjct: 157 NIIGDSAALGEVLSKVEQVAPTNSTVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCA 216 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL +L+SELFGHE GAFTGA + PGRFE ADGGTLFLDE PM VQ KLLR ++ Sbjct: 217 ALAPGVLESELFGHEKGAFTGAVAQRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQE 276 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG+Q ++V+VR++ ATN DL AM+ G+FR DL RL + LPPLR+R D+ Sbjct: 277 REFERVGGTQTIKVDVRVISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDL 336 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +F + R + PG A + L +Y WPGN+REL+N++ER++ + Sbjct: 337 PALVAHFIAKFARS-GMTRTPGVRGAALDKLRSYTWPGNVRELENIIERAMILARGRELD 395 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSL--------PTLPLD----LREFQMQQEKELLQLS 294 D + F RR ++A VS T S+ P L D L E + E+ + + Sbjct: 396 ADHL---DFGRR-AQNATPVSGTPSVISETASHSPPLIGDESKPLAERLLDSERREIIAA 451 Query: 295 LQQGKYNQKRAAELLGLTYHQFRALLKKH 323 +++ N AA +LG+ ++KH Sbjct: 452 VEKSNNNIASAARMLGINRSTLYYRMRKH 480 >UniRef50_A8USY5 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8USY5_9AQUI Length = 349 Score = 236 bits (602), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 132/325 (40%), Positives = 194/325 (59%), Gaps = 11/325 (3%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + E + +G V + + AP D PVLI+GE GTGKEL A +H S R + F Sbjct: 35 VCEENTDFVGSCERMTRVFDLIRRFAPTDYPVLILGETGTGKELTARAIHEKSPRREKAF 94 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I++NC A+ LL++ELFG+E GAFTGA +R PG+ E+A+GGTLFLDE+ P+ +Q KL Sbjct: 95 IAINCGAIPGELLEAELFGYEKGAFTGAHRRKPGKIEQANGGTLFLDEIGELPLELQVKL 154 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LR +E RVGG++ ++ +VRL+ ATN DL +V +G FR DL RL ++LPPLR Sbjct: 155 LRFLEDYTFSRVGGNETIKADVRLIAATNGDLRELVRKGKFREDLYYRLKVLSIELPPLR 214 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R D +LMA+YF + RE + + GFT+ A E + NY WPGN+REL NV++++V Sbjct: 215 DRGEDKVLMAKYFLEKFKREQEKSI-EGFTDEAIELIENYSWPGNVRELINVMKKAVVM- 272 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 T +D + +D D VS+ L +L+E + EKEL++ + K Sbjct: 273 -TDKRFIDAVDLDV-------DTSKVSKNIGGQRL-FNLKEHMDKLEKELVEKAFNVSKG 323 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N + A +LG++ L++KH + Sbjct: 324 NISKMASMLGVSRPTVYKLIEKHNL 348 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 235 bits (600), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 133/310 (42%), Positives = 191/310 (61%), Gaps = 11/310 (3%) Query: 25 LAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGA 84 +A + VLI GE GTGKE+ A +H S+R G F+++NCAAL ENL++SELFG+E GA Sbjct: 154 VAASEATVLITGESGTGKEVFARYIHENSNRSSGAFVAVNCAALPENLMESELFGYEKGA 213 Query: 85 FTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 FTGA R PG+FE ADGGT+ LDEL P+ +Q KLLRV++ E+ER+GG++P ++NVR+ Sbjct: 214 FTGAVNRKPGKFELADGGTILLDELGEIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRI 273 Query: 145 VCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLP 204 + TN L V+EG FR DL RL ++LPPLRER+ DIM +A +FA + +I Sbjct: 274 LATTNKVLKKEVDEGNFREDLYYRLNVISIELPPLRERKEDIMELATFFA-EKYAQINGK 332 Query: 205 LFPGFTERARETLLNYRWPGNIRELKNVVERSVY--RHGT---SDYPLDDIIIDPFKRRP 259 T+ A + LL+Y WPGN+REL++ +ER+V R G + L I I+ F Sbjct: 333 GSCKMTDDAVKALLDYDWPGNVRELEHTIERAVVLCRDGVISERNLFLHGITINQFMTDK 392 Query: 260 PEDAIAVSETTSLPT-----LPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYH 314 E A A S T T +D + E+EL+ +L++ N+ +AA++LG+T Sbjct: 393 QELAAADSYTGCETTEDSVSAGIDFAGTIAEMERELIIKTLKETGGNRTKAADMLGITVR 452 Query: 315 QFRALLKKHQ 324 R L +++ Sbjct: 453 TLRNKLNEYK 462 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 235 bits (600), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 135/326 (41%), Positives = 194/326 (59%), Gaps = 14/326 (4%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + E N++G A S V + + +AP + VLI+GE G GKEL+A+ +HY S R PF Sbjct: 236 VGEQPANIIGNAKSMRVVFKMIDKIAPTNATVLILGESGVGKELVANAIHYKSQRAASPF 295 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I NCAAL E++++SELFGHE GAFTGA GRFE A+ GT+FLDE+ + +Q KL Sbjct: 296 IKFNCAALPESIVESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKL 355 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LR+++ E ERVGG++ ++ +VR++ ATN +L + EG FR DL RL V +PPLR Sbjct: 356 LRILQEKEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLR 415 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+SDI+L+A+YF ++ ++ + A + L+ Y WPGN+REL+N VER+V Sbjct: 416 ERKSDILLLADYF-VEKYNQMNGKGVRRISTTAIDMLMRYHWPGNVRELENCVERAVILS 474 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTL-PLDLREFQMQQEKELLQLSLQQGK 299 DD +I + PP + +E++ P PL R + E EL+ +L+ K Sbjct: 475 -------DDGVIHGY-HLPP--TLQTAESSGTPCAGPLQQRLDAL--EYELIVEALKNTK 522 Query: 300 YNQKRAAELLGLTYHQFRALLKKHQI 325 N +AA LGLT +KK I Sbjct: 523 GNMSKAAMELGLTDRVMGLRVKKFDI 548 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 235 bits (600), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 137/318 (43%), Positives = 195/318 (61%), Gaps = 9/318 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++L + + +++ + + +A VLI GE GTGKELIA +HY S R +GPFI +NCA Sbjct: 144 HILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCA 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E+LL+SELFGHE GAFTGAQ G FERA+ GTL LDE+ P+++Q KLLR+++ Sbjct: 204 ALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQE 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ER+GG Q ++V++R++ ATN DL AMV EGTFR DL RL + LPPLR+R DI Sbjct: 264 REFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDI 323 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A +F + E + + A L + WPGNIREL NV+ER+V + Sbjct: 324 SLLANHFLQKFSSENQRDII-DIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIF 382 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 +D+ P R+P +A E + P +L+E + EK ++ L+Q + N+ R A Sbjct: 383 SEDL--PPQIRQPVCNA---GEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTA 437 Query: 307 ELLGLTYHQFRALLKKHQ 324 +LG++ RAL+ K Q Sbjct: 438 LMLGISR---RALMYKLQ 452 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 234 bits (598), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 133/313 (42%), Positives = 192/313 (61%), Gaps = 18/313 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 NL+G++ SF VL+ V +A D VL+ GE GTGKELIA +H+ S R +GPF+++NCA Sbjct: 192 NLVGQSPSFQAVLKTVMKVASTDATVLLFGESGTGKELIAKTIHFQSKRAKGPFVAINCA 251 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENLL++ELFG E GAFTGA KR G+FE+A+GGT+FLDE+A P+ +Q KLLRV++ Sbjct: 252 AIPENLLEAELFGSEKGAFTGAVKRI-GKFEQANGGTIFLDEIAELPLSLQPKLLRVLQE 310 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 +E +G S+ ++V+VRL+ ATN DL + +G FR DL RL + +PPLRER+ DI Sbjct: 311 RTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFREDLFWRLNVIPIYIPPLRERKEDI 370 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD-- 244 L+ EY+ C + + E A + L++Y WPGN+REL N +ER V +S Sbjct: 371 PLLVEYYLKSFCNIYRKSV--SIDEEALKVLVSYDWPGNVRELANTIERLVVMTESSKIK 428 Query: 245 -YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 Y L D + FK +P + LP ++ E E+ + +L + +N + Sbjct: 429 VYDLPDTVRGVFKLKP--------YSLGDLKLPTEVEEL----ERIRIMDTLPKFNFNIR 476 Query: 304 RAAELLGLTYHQF 316 + A+ LGLT Q Sbjct: 477 KTAQALGLTERQL 489 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 137/313 (43%), Positives = 189/313 (60%), Gaps = 26/313 (8%) Query: 15 FLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 F++ L+ V +AP D VLI+GE G GKELIA +H LS+R P I LNCAAL L++ Sbjct: 172 FMKALQLVEQVAPTDASVLILGETGVGKELIARAIHNLSNRRDRPLIRLNCAALPATLME 231 Query: 75 SELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGG 134 +ELFGHE GAFTGA R PGRF+ ADGGTLFLDE+ PM +Q KLLRV++ GE ER+GG Sbjct: 232 NELFGHERGAFTGANCRKPGRFDLADGGTLFLDEVGDLPMELQSKLLRVLQEGEFERLGG 291 Query: 135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFA 194 ++ ++V+VR++ AT+ DL A++ EG FR+DL RL +Q PPLRER DI L+ +F Sbjct: 292 AETIKVDVRILAATHVDLKALLAEGRFRSDLYYRLNVFPIQCPPLRERREDIPLLVRHFV 351 Query: 195 IQMCRE--IKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIII 252 C + + L P E+L Y WPGNIREL+NV+ER+V + +D + Sbjct: 352 KASCEKNGKSIELIP---RHVMESLEGYPWPGNIRELQNVIERAVIISRGNKLEIDSL-- 406 Query: 253 DPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY---NQKRAAELL 309 P+ IA + P PL++ E+E + +L+ + K AAE+L Sbjct: 407 -------PKMVIAAD---AAPISPLEV------TEREHIIRALETTAWRVGGPKGAAEIL 450 Query: 310 GLTYHQFRALLKK 322 GL +A ++K Sbjct: 451 GLKRTTLQARMRK 463 >UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5C3_DESRD Length = 521 Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 115/250 (46%), Positives = 163/250 (65%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A+ ++G V+EQ +A LD PVL++GE G GK +IA +H LS R QGP I Sbjct: 192 AKQGQEVVGAEFGLRGVMEQAQQVAQLDNPVLLLGETGCGKGMIADTIHKLSRRAQGPMI 251 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 ++NC A+ +LL+SELFGHE GAFTGA+++ GRFERA GGT+FLDE+ P+ Q KLL Sbjct: 252 TVNCGAIPASLLESELFGHEKGAFTGAERQKRGRFERAQGGTVFLDEIGELPLESQVKLL 311 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 V+++ E+ERVGGSQ + +++R++ ATN DL MV+ G FR DL RL V +PPLR+ Sbjct: 312 HVLQHKEIERVGGSQTIALDIRIIAATNRDLAGMVSSGQFREDLWYRLNVFPVMVPPLRQ 371 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R+ DI + YF E+KLP P A + L+ Y WPGN+REL+N +ER++ + Sbjct: 372 RKEDIPALVRYFLQHKAVELKLPSRPKLPSGALDKLMAYHWPGNVRELENFIERALIQTP 431 Query: 242 TSDYPLDDII 251 + +D ++ Sbjct: 432 GGELEIDSLL 441 >UniRef50_C0Q938 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q938_DESAH Length = 525 Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 132/325 (40%), Positives = 188/325 (57%), Gaps = 13/325 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G +V+ V H+AP D PV+I+GE GTGKE+IA+ +H S R FI +NC Sbjct: 196 DTIIGSKFGLKDVMRMVEHVAPTDSPVMIMGETGTGKEVIANAIHLSSRRKDSAFIKINC 255 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ +NL+DSELFGHE GAFTGA R GRFERA GT+FLDE+ P+ Q +LLRV++ Sbjct: 256 GAIPDNLIDSELFGHEKGAFTGAVSRKRGRFERAHNGTIFLDEVGELPLQAQVRLLRVLQ 315 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ERVGGS+ + V+VR+V AT+ +L MV G FRADL RL + +PPLR R D Sbjct: 316 QHEIERVGGSETIPVDVRIVAATHKNLEEMVRTGQFRADLWFRLNVFPIHIPPLRHRTID 375 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV----YRHG 241 + + +YF + E+K+ P E + Y WPGN+REL+N+VER++ ++ Sbjct: 376 LPALTDYFLEKKSMELKIRKRPSLAPGTMEKMQAYEWPGNVRELQNLVERALIFNQMKND 435 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 S D +I+P P++ + + PLD E +++L + GK Sbjct: 436 ESQLTFDPQLINPI----PKENMTLKREDGKIIRPLD--EVMANHIQKVLDQT--NGKVE 487 Query: 302 QKR-AAELLGLTYHQFRALLKKHQI 325 K AA LL + R +KK +I Sbjct: 488 GKNGAASLLKINPGTLRGRMKKLKI 512 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 233 bits (594), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 127/320 (39%), Positives = 190/320 (59%), Gaps = 17/320 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + +G++ + + + + + +A D VL++GE G GK LIA +H LS R PFIS+NC Sbjct: 195 EGFVGKSEAIITLKDTIQKIAMTDSTVLLLGESGVGKTLIAKAIHTLSERKDKPFISVNC 254 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ E LL++ELFG+E GAFTGA G+FE A+GGT+FLDE+ P+ Q KLLRVI+ Sbjct: 255 AAIPETLLEAELFGYEKGAFTGAVHSKKGKFELANGGTIFLDEIGELPLQSQSKLLRVIQ 314 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ELE++G + + VNVR++ +TN DL +MV G FR DL RL +++P LRER+ D Sbjct: 315 EKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEFREDLYYRLNVIPIRVPALRERKED 374 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ ++F + + K + + A E L+NY WPGNIREL+N++ER V + Sbjct: 375 IPLLVKHFLDKFNKHYKKHI--NIEKEAMEALVNYNWPGNIRELENLIERLVVINN---- 428 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 K ED + ++ S L D+ EKE ++ +L++ Y + +A Sbjct: 429 ----------KDITKEDVLLATKINS-NKLQTDIPSIIESTEKEAIKKALEKCGYVKSKA 477 Query: 306 AELLGLTYHQFRALLKKHQI 325 A++LGLT Q +KK+ I Sbjct: 478 AKILGLTLRQLDYRIKKYNI 497 >UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUD7_PERMH Length = 456 Score = 233 bits (594), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 131/327 (40%), Positives = 196/327 (59%), Gaps = 5/327 (1%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + +Y +++G + E+ + +AP D PVLI GE GTGKEL+A + LS R PF Sbjct: 129 LCQYLCSIIGSSPQLREICKLAGEVAPTDLPVLITGETGTGKELLARGIWKLSKRSNKPF 188 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I++NCAA+ ENLL+SELFG+E GAFTGA+K G+FE ADGGT+FLDE+ P+ Q KL Sbjct: 189 IAINCAAIPENLLESELFGYEKGAFTGAEKTKEGKFELADGGTIFLDEIGELPLSAQSKL 248 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ G RVGG++ ++V+VR++ ATN DL MV +G FR DL RL + LPPLR Sbjct: 249 LRVLQEGTFYRVGGNKEIKVDVRVMAATNRDLEDMVAKGKFREDLYYRLNLIHLHLPPLR 308 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DI + E + +++ + G ++ E L + RW GNIREL+N V RS+ Sbjct: 309 ERKEDIPYIVECIVNKYNQKLSKSI-AGASKEYMEVLKDQRWEGNIRELENTVVRSMILC 367 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPL----DLREFQMQQEKELLQLSLQ 296 + ++D+ KR P+ E L + E + + +K ++Q +L+ Sbjct: 368 RDNILTVNDLTFLREKRVKPQIEDNFEEILKNRVLASLEEGSIEEIKEKIDKIIVQTALE 427 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKH 323 K+NQ +A++LLG+ R ++K+ Sbjct: 428 YTKHNQVKASQLLGINRATLRKKIQKY 454 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 233 bits (593), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 134/318 (42%), Positives = 193/318 (60%), Gaps = 14/318 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + ++G++ + ++L +++ +AP D VLI G+ GTGKEL+A LH S+R P ++LN Sbjct: 138 QSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVARALHASSARSDKPLVTLN 197 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAALNE+LL+SELFGHE GAFTGA KR GRF ADGGTLFLDE+ ++Q +LLR I Sbjct: 198 CAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAI 257 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E++RVG +Q L V+VRL+ AT+ DL + G FR DL RL ++ P LR+R Sbjct: 258 QEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYYRLNVVTIETPSLRQRRE 317 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+AE+F +Q GFT +A + L++Y WPGNIREL+N +ER+V T + Sbjct: 318 DIPLLAEHF-LQRFAARNRKAVKGFTPQAMDLLIHYAWPGNIRELENAIERAVVLL-TGE 375 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 Y R AIA ++P +P + ++ EKE++ +L++ N+ Sbjct: 376 Y---------ISERELPLAIA---NQAMPLMPAQAIQPLVEVEKEVILAALEKTGGNKTE 423 Query: 305 AAELLGLTYHQFRALLKK 322 AA LG+T A L + Sbjct: 424 AARQLGITRKTLLAKLSR 441 >UniRef50_Q7UK84 Probable two-component response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UK84_RHOBA Length = 654 Score = 233 bits (593), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 177/304 (58%), Gaps = 7/304 (2%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G +S E+ + +AP D VL++G GTGKE++A +HY S R GPF+++NCAA Sbjct: 340 LIGNHHSIQEIRRNATKVAPTDLSVLVLGSNGTGKEVLAQHIHYQSERRNGPFVAVNCAA 399 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E LL+SELFGHE GAFT A G+FE A+GGTLFLDE+ Q KLLRV+E Sbjct: 400 LVETLLESELFGHEKGAFTDASDTRVGKFELANGGTLFLDEVGDMSAGGQAKLLRVLEEK 459 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 + RVGGS+P+ V+VR++ ATN L +++ FR DL RL + LPPL R D+M Sbjct: 460 VVVRVGGSRPIPVDVRVIAATNQPLQELISAKRFREDLFFRLNVVSLTLPPLSHRGDDVM 519 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +AE+F + CR+I + P F AR+ +L++ WPGN+REL+N VER Y T Sbjct: 520 ELAEHFLVDFCRQIGRAV-PTFAASARDAMLSHDWPGNVRELRNTVERICYLTTTDVVEA 578 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 D+++ P R + + + L REFQ+Q + L + N AA Sbjct: 579 SDLMMSPSATRASTVSPTMDDVDG--NLNSATREFQIQHIERL----IASCGGNMTEAAG 632 Query: 308 LLGL 311 LGL Sbjct: 633 KLGL 636 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 119/319 (37%), Positives = 191/319 (59%), Gaps = 9/319 (2%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++NS E+ E + +A + +++ GE GTGKEL+ LHY R PF+ +NCAA Sbjct: 284 MIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKELVVRALHYGGERRDNPFVKVNCAA 343 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + +++L+SELFGHE GAFTGA K+ GRFE A GTLFLDE+ + +Q K LR+I+ Sbjct: 344 MPKDILESELFGHEKGAFTGADKKRVGRFELAHKGTLFLDEIGDMDLSIQAKFLRIIQQQ 403 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG++ ++V+VR++CATN DL V EG FR DL RL + +PPLRER+ DI Sbjct: 404 EFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLYVPPLRERKEDIP 463 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + +F + ++ + P + + L+ Y WPGN+REL+N +ER++ G L Sbjct: 464 FLIHHFLKEKGKKFD-KIAPKISPEVFDALMEYDWPGNVRELENAMERAIILCGKDLIRL 522 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQ-EKELLQLSLQQGKYNQKRAA 306 +++ I K D S P+D++E ++ E+E++ +L++ +N+ + + Sbjct: 523 NNLPISIVKNNKEFDE-------SKHVTPIDIKEITIRNMEREIIIEALEKCDWNRTKTS 575 Query: 307 ELLGLTYHQFRALLKKHQI 325 + LG++ +K+ I Sbjct: 576 KSLGISRRTLYNKMKEFNI 594 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 133/318 (41%), Positives = 189/318 (59%), Gaps = 8/318 (2%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G + + EV + +A D VLI GE GTGKEL+A +HY S R + PF+S+NCAA Sbjct: 429 LVGNSAAMQEVYRLIEKVAKTDATVLIRGESGTGKELVARAIHYHSRRSEAPFVSINCAA 488 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E LL+SELFGH GAFTGA G FE A+ GT+FLDE+ + +Q KLLRV++ G Sbjct: 489 LPETLLESELFGHARGAFTGAVTAKKGLFEEANEGTIFLDEIGDISLGLQSKLLRVLQEG 548 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E RVG ++P +VNVR++ ATN DL V +G FR +LL RL + LPPLRER DI Sbjct: 549 EFLRVGETRPTRVNVRVLAATNRDLEKAVKDGAFRPELLYRLNVITIWLPPLRERRDDIP 608 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A +F + C+ + + GFT A + L+ WPGN+REL+NV+ER+V + L Sbjct: 609 LLARHFLEKSCQRLGKEV-NGFTHEAMDALIRADWPGNVRELENVIERAVILTESKRIEL 667 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 D+ P + R +A + T + +E E L+ +L++ + Q RAAE Sbjct: 668 GDL---PRQFR----NMAAGASGWAFTRGMSFKEAVAAYESRLILQALEESQGVQARAAE 720 Query: 308 LLGLTYHQFRALLKKHQI 325 +LGL ++K++ + Sbjct: 721 ILGLKRSTLNEMIKRYNL 738 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 134/309 (43%), Positives = 185/309 (59%), Gaps = 15/309 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 K ++ + + V+ Q+ +A + V I GE GTGKEL A LH S R GPFI+LN Sbjct: 138 KHEIVWKGEAMRRVMAQIDRVAASEARVCIYGETGTGKELAARTLHEKSPRKAGPFITLN 197 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAA+ L++SELFGHE G+FTGA +RH G+FE+A GTLFLDE+ P+ +Q KLLRV+ Sbjct: 198 CAAVPAELIESELFGHEKGSFTGAAQRHIGKFEQAHRGTLFLDEIGDMPLAMQAKLLRVL 257 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 E GE+ERVGG + + V+VR++ AT+ +L +V EG FR DL R+ + LPPLR R Sbjct: 258 EEGEVERVGGDKSIPVDVRVIVATHRNLEDLVKEGKFRQDLFHRVYVFPLILPPLRTRRE 317 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY--RHGT 242 DI ++ E+FA Q+C + P FT A E L Y WPGN+RE++NVVER + G Sbjct: 318 DIPVLLEHFAAQVCLQNGWKPVP-FTAEAVEALQRYSWPGNVREMRNVVERLLLLAVAGE 376 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 D ++ + PE A S+T S P L Q E+E++ LQ+ K++ Sbjct: 377 VDRATVELAL-------PEAQTATSDTGSGP-----LSSRVAQYEREVILAELQRQKHHI 424 Query: 303 KRAAELLGL 311 A+ LGL Sbjct: 425 TNTAKALGL 433 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 132/321 (41%), Positives = 193/321 (60%), Gaps = 8/321 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 L+G + + + Q++ +AP +LI GE GTGKEL+A LH LS R +S+NCA Sbjct: 140 TLVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQALHRLSPRSNKALVSINCA 199 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A ENLL+SELFGHE GAFTGA +R G E +DGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 200 AFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLDEIGEFPLNLQPKLLRVLQE 259 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 RVGG+ + ++R++ AT+ +L M+ EGTFR DL RL + LPPLR R DI Sbjct: 260 KTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYYRLNVVSLHLPPLRHRREDI 319 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+++ F ++ R++ PL P + +A+ L +Y WPGN+REL+N++ER + D P Sbjct: 320 PLLSQLFLERLSRDMGCPL-PQLSSQAQHDLYHYEWPGNVRELQNILERGLL---FCDGP 375 Query: 247 L--DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + + F + P SET ++P L L E E++L+Q +L + Q + Sbjct: 376 TLEQNHLPQQFHSQAPHHN-GCSETAAMP-LQQPLPEHLETIEQKLIQAALIDARGVQAK 433 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AAELLG++ + LKK+ + Sbjct: 434 AAELLGISRSNLQYKLKKYHL 454 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/314 (40%), Positives = 186/314 (59%), Gaps = 14/314 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++G + + E+ + + P VL+ GE G GK+LIA +H+ S R P + +NC Sbjct: 139 DNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLIARAIHFHSPRKDRPLVKINC 198 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ ENL++SELFG+E GAFTGAQ PG+FE+AD GT+FLDE+ P +Q KLLRV++ Sbjct: 199 TAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVFLDEIGDVPAAIQVKLLRVLQ 258 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ER+G + ++VRLV ATN DL A + +GTFR DL RL + +PPLRER+ D Sbjct: 259 EREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDLYYRLNVVPLNIPPLRERKVD 318 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I +A +F ++ + + T+ E L+ Y WPGN+REL+NV+ERS+ + Sbjct: 319 IPFLANHFVHKLAPDTGCQV-ESITDAGMEKLMAYHWPGNVRELENVIERSLVMATGTQL 377 Query: 246 PLDDIIID--PFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 DDI ++ P R D + E SL Q E+E+++ +L++ N+ Sbjct: 378 DADDIKLESAPRPRAQGNDNHFLPEGLSLD-----------QYEQEIIREALRRADGNKS 426 Query: 304 RAAELLGLTYHQFR 317 +AA LLGLT + R Sbjct: 427 QAARLLGLTRNALR 440 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 125/319 (39%), Positives = 193/319 (60%), Gaps = 15/319 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++ E+ +VLE +AP D VLI GE GTGKE+IA+ +H S R + PFI++NC Sbjct: 137 DIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIHKNSLRKERPFIAINCG 196 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ LL+SELFG++ GAFTGA G E A+GGTLFLDE+ P+ +Q KLLRV++ Sbjct: 197 AIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLDEIGELPLDLQVKLLRVLQE 256 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++ +G ++P +++VR + ATN DL MV EG FR DL R+ + +PPLRER+ DI Sbjct: 257 NEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYRINVIPIHIPPLRERKEDI 316 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +A+YF + C +P +E+ARE LLNY + GN+REL+N++ER+V T Sbjct: 317 IPLAQYFINKFCSRYGIPK-KRLSEKAREKLLNYDYKGNVRELENIIERAVL--TTEGEE 373 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + DI + VS+ L +E + + E+ L+ L++ +N +A+ Sbjct: 374 ITDI------------PVTVSKRYILSQELKPFKEAKKEFEESYLKNLLEKTDFNISKAS 421 Query: 307 ELLGLTYHQFRALLKKHQI 325 ++ G+T Q ++K++ I Sbjct: 422 KIAGITRAQIYRMIKRYGI 440 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 131/318 (41%), Positives = 187/318 (58%), Gaps = 18/318 (5%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ + E+ + +A + VLI GE GTGKEL+A +H S R PFI ++C Sbjct: 136 IIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKNSLRKSKPFIIVDCTT 195 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + ENLL+SELFGHE GAFTGA +R G E A+ GT+FLDE+ PM++Q+KLLR ++ Sbjct: 196 IPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIGELPMLLQKKLLRFLQEK 255 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++R+G +Q ++V+VR++ ATN DL + EG+FR DL RL + LPPLRER+ DI Sbjct: 256 EIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVVRINLPPLRERKEDIP 315 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+ +F + +E P+ P L+NY WPGNIREL NV+ER+V P Sbjct: 316 LLVNHFLNKFSKENNKPI-PQLEPEVMNALINYYWPGNIRELANVIERAVVLS-----PS 369 Query: 248 DDIIIDPFKRRPPEDA--IAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 I I RR E+ + E T +L E EK L+ +L +NQ +A Sbjct: 370 GLISIKHLPRRIQENTGWTIIKENT------FNLLEV----EKALILKALNSTGWNQTKA 419 Query: 306 AELLGLTYHQFRALLKKH 323 AE+LG++ Q R +K H Sbjct: 420 AEILGISRKQLRTKMKHH 437 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 126/251 (50%), Positives = 166/251 (66%), Gaps = 10/251 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G++ + + VL++VS +A D VLI GE GTGKEL+A +H S R P I LNC Sbjct: 324 DEIVGQSPALVSVLQRVSKVAGTDSTVLITGETGTGKELVARAVHSASPRKAKPLIKLNC 383 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL +L++SELFGHE GAFTGA R PGRFE ADGGTLFLDE+ + Q KLLRV++ Sbjct: 384 AALPTHLVESELFGHEKGAFTGAVARKPGRFELADGGTLFLDEVGELSLEAQAKLLRVLQ 443 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVGG+ P++V+VR++ ATN DL +V EG FRADLL RL V+LP LRER D Sbjct: 444 EREFERVGGTAPVKVDVRVIAATNRDLAQLVKEGAFRADLLYRLNVFPVRLPALRERPGD 503 Query: 186 IMLMAEYFAIQMCREI--KLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 I L+ +F + + ++ G T + L+ Y WPGNIREL+NV+ER+ S Sbjct: 504 IPLLVRFFVTKFAGRLGKRIERVSGDT---LDALVGYDWPGNIRELENVIERAAI---LS 557 Query: 244 DYPLDDIIIDP 254 D P +++IDP Sbjct: 558 DGP--ELVIDP 566 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 231 bits (590), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 129/305 (42%), Positives = 186/305 (60%), Gaps = 15/305 (4%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++GE+ E+ Q+S +AP D +L+ GE GTGKEL+A+ +H S R +G I +NCAA Sbjct: 140 IIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATAIHRHSKRKEGALIRINCAA 199 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L+ENLL+SELFGHE GAFTGA K+ G FERAD GTLFLDE+ + Q K+LRV++ G Sbjct: 200 LHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDEIGDMSLTTQVKILRVLQEG 259 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG+ ++VNVR++ A++ +L ++ EGTFR DL RL+ + LP LRER DI Sbjct: 260 EFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRLSVVPLHLPALRERLVDIP 319 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 ++A +F + + + GF++ A + L+ Y WPGNIREL+N +ER V Sbjct: 320 ILANFF-LSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIRELENSIERGVILCLGEQITA 378 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 ++ F+ R P E +S T LR+ EK +Q +L + +N+ A+ Sbjct: 379 HELPPQFFRNRSP------GELSSRDT----LRDV----EKRAIQQALARSGFNKSATAK 424 Query: 308 LLGLT 312 LG+ Sbjct: 425 QLGIA 429 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 140/324 (43%), Positives = 194/324 (59%), Gaps = 31/324 (9%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G + EV+++V +AP +LI GE GTGKELIA +H SSR +GPF++++C Sbjct: 140 EGIIGNSPKLHEVIDRVKLVAPSRATILIEGESGTGKELIAQAIHQSSSRSRGPFLAVHC 199 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL+ENLL+SELFGHE G+FTGA +R GRFE ADGGTLFLDE+ Q KLLR +E Sbjct: 200 AALSENLLESELFGHERGSFTGATERRIGRFESADGGTLFLDEIGEISASTQVKLLRFLE 259 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 +ERVGGS+P+ ++VRLV ATN L +V +G FR DL RL + +PPLRER D Sbjct: 260 TKSIERVGGSKPIDLDVRLVAATNRTLEQLVRDGKFREDLFFRLNVVRITMPPLRERAED 319 Query: 186 IMLMAEYFAIQMCREIKLP---LFPGFTERARETLLNYRWPGNIRELKNVVERSVY-RHG 241 + L+ ++ E +P + PG A TL Y WPGNIREL+N E +V R G Sbjct: 320 VPLLLGHYITAFSEENGVPPLTIEPG----ALATLQAYPWPGNIRELRNFCENAVVLRRG 375 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPT------------LPLDLREFQMQQ-EK 288 S L + ++P R DA T PT +P F +++ EK Sbjct: 376 RS---LSEYDLEPRYR----DATLAGATGPAPTPGAPGSTVLGGAVPTS---FSVEENEK 425 Query: 289 ELLQLSLQQGKYNQKRAAELLGLT 312 LL+ +L + + N+ +AAEL+G++ Sbjct: 426 RLLREALIKSRGNRTKAAELMGIS 449 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 135/320 (42%), Positives = 189/320 (59%), Gaps = 13/320 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G + + L S A D VLI GE GTGKEL+A+ +HY S R PFI +NC Sbjct: 229 DIIIGNSGKLKDALTIASKAAETDSTVLIRGESGTGKELVANAIHYASKRKDKPFIRVNC 288 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ LL+SELFGHE GAFTGA + G+FE ADGGT+FLDE+ P +Q KLLRVI+ Sbjct: 289 AAIPVTLLESELFGHERGAFTGAVTQKIGKFELADGGTIFLDEIGDIPPEIQVKLLRVIQ 348 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVGG + ++V+VR++ ATN DL + EGTFR DL RL V LPPLRER D Sbjct: 349 EKEFERVGGIKTIKVDVRIIAATNKDLEKAIKEGTFREDLYYRLNVIPVILPPLRERRGD 408 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ E+F I+ + T++A + L+ Y WPGNIREL+N++ER + T Sbjct: 409 IPLLVEHF-IEKLNKKLNKNVKKVTKKAMQALIYYDWPGNIRELENIIERCITLSDTDYI 467 Query: 246 PLDDI---IIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 +D+ I + +D I + E + L T+ + E ++++ ++Q+ K Sbjct: 468 DYEDLPQYIRNETTTVSDDDIIYLGENSELLTME--------EYEYKIIKAAIQRYKSFN 519 Query: 303 KRAAELLGLTYHQFRALLKK 322 K A ++LGLT+ A +K Sbjct: 520 K-AGKVLGLTHKTIAAKARK 538 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 126/318 (39%), Positives = 187/318 (58%), Gaps = 3/318 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++GE+ ++L V+ +A + V I GE GTGKE+IA +H S+R Q PFI +NCAA Sbjct: 144 IIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIAQAIHANSARSQFPFIKVNCAA 203 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E L++SE FGHE GAFTGA + GRFE A GTL LDE+ P+ VQ KLLR I+ Sbjct: 204 IPETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTLLLDEITEIPLAVQAKLLRAIQEQ 263 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGGS+P++V+VRL+ +N D+ + R DL RL + LPPLR+R DI+ Sbjct: 264 EFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLYYRLNVVPIYLPPLRDRPEDIL 323 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +A YF +MC E F++ + + L+ Y WPGN+REL N+VER+V S+ Sbjct: 324 PLAHYFLEKMCME-NHKQAKTFSKESIKKLVGYAWPGNVRELANIVERAVVMTTNSEITP 382 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 + + I+ P + +L +LP+ + ++ EK L+ +LQ N+ + AE Sbjct: 383 EHLYIENNHPNLPLRTASTLSQNTLTSLPVGMTLQEL--EKRLIIETLQAQHNNRTKTAE 440 Query: 308 LLGLTYHQFRALLKKHQI 325 +LG++ R L ++ + Sbjct: 441 VLGISVRTLRNKLNEYNM 458 >UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing protein n=5 Tax=Desulfuromonadales RepID=A1ALJ3_PELPD Length = 517 Score = 230 bits (587), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 117/253 (46%), Positives = 161/253 (63%), Gaps = 2/253 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G V+E V +APL+ VL++GE GTGKELIA+ +H S R GP I +NC Sbjct: 191 DEIVGANLGLRHVMEMVRQVAPLNNTVLLLGETGTGKELIANAIHSASPRKDGPLIKVNC 250 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ E L+DSELFGHE GAFTGA GRFERADGGT+FLDE+ P+ Q +LLRV++ Sbjct: 251 GAIPEQLIDSELFGHEKGAFTGAVTERRGRFERADGGTIFLDEIGELPLQAQVRLLRVLQ 310 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E++RVGGS+P+ V++R++ AT+ +L +M+ E FR DL RL + +PPLR+R D Sbjct: 311 NHEIDRVGGSRPIPVDIRVIAATHRNLESMIAENRFREDLWFRLNVFPLFIPPLRQRRED 370 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + +F Q CRE+ + P A L+ Y WPGN+REL+N+VER + H Sbjct: 371 IPGLTRHFISQKCRELGMAAMPDIAPGALVRLMEYAWPGNVRELENLVERELILHRGGTL 430 Query: 246 PLDDIIIDPFKRR 258 D ++ P RR Sbjct: 431 QFDALM--PAARR 441 >UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphaproteobacteria RepID=NIFA_RHISN Length = 594 Score = 229 bits (585), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 144/346 (41%), Positives = 193/346 (55%), Gaps = 32/346 (9%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++GE+ + +V+E V +A + VL+ GE GTGKE A +H LS R + PF+ LNC Sbjct: 250 DWIVGESPALRQVVESVKVVAQTNSAVLLRGESGTGKEFFAKAIHELSPRRKKPFVKLNC 309 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL+ +L+SELFGHE GAFTGA + GRFE ADGGTL LDE+ Q KLLRV++ Sbjct: 310 AALSAGVLESELFGHEKGAFTGAISQRAGRFELADGGTLLLDEIGEISPAFQAKLLRVLQ 369 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GELERVGG++ L+V+VRL+CATN DL V EG FRADL R+ + LPPLRER D Sbjct: 370 EGELERVGGTKTLKVDVRLICATNKDLETAVAEGEFRADLYYRINVVPLFLPPLRERNGD 429 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVER---------- 235 I +A+ F + RE L FT A E L ++PGN+REL+N V R Sbjct: 430 IPRLAKVFLDRFNRENNRNL--EFTPAALEILSRCKFPGNVRELENCVRRTATLARSATI 487 Query: 236 -------------SVYRHGTSDYPLDDIIIDPF---KRRPPEDAIAVSETTSLPTLPLDL 279 S T+D PL ++ KR P E ++ P P L Sbjct: 488 VPSDFSCQNDQCFSSMLGKTADRPLGSHSLNGLAMSKRLPVESPASL----GYPAGPGGL 543 Query: 280 REFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 ++ELL ++++ + Q +AA +LGLT Q L++H I Sbjct: 544 TVAPHLSDRELLISAMEKAGWVQAKAARILGLTPRQVGYALRRHHI 589 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 229 bits (585), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 131/328 (39%), Positives = 191/328 (58%), Gaps = 18/328 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++L+G++ V + V ++ VLI GE GTGKEL+A +HY S+R PF+++NC Sbjct: 146 EDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVAVNC 205 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +AL E LL+SELFGH G+FTGA G FE ADGGT+FLDE+ P Q +LLRV++ Sbjct: 206 SALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVRLLRVLQ 265 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE++RVG ++P++V+VR++ AT+ DL +G FR DL RL + LPPLR+R D Sbjct: 266 EGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDRPED 325 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + L+A +F +++ G + RA E L RW GN+REL+NV+ER+V G Sbjct: 326 VPLLAHHF-LKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVLTGNEVI 384 Query: 246 PLDDIIIDP--FKRRPPEDAIAVSETTSLPTLP------LDLREFQMQQEKELLQLSLQQ 297 ++D+ P F+ P D+ E SL LP L +R F E+ L L++ Sbjct: 385 DVEDL---PPGFQSAPQPDSTV--EVFSLAHLPYAQAKRLAMRAF----ERRYLSALLEK 435 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 N AA G+ FR LLK++++ Sbjct: 436 NNQNVSSAARAAGVDRSNFRRLLKQYEV 463 >UniRef50_Q46PB6 Helix-turn-helix, Fis-type n=7 Tax=Burkholderiaceae RepID=Q46PB6_RALEJ Length = 592 Score = 229 bits (584), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 131/329 (39%), Positives = 186/329 (56%), Gaps = 11/329 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + F V V+ +AP D VL +GE G GKE+ A+ LH LS R GP++++NCA Sbjct: 260 GVVGISAGFNTVCHMVNKVAPTDATVLFLGESGVGKEVFANNLHRLSKRADGPYVAVNCA 319 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ++ E+L++SELFG E G FTGA GRFERADGGTLFLDE+ T Q KLLR ++ Sbjct: 320 SIPEHLMESELFGVERGGFTGATTSRAGRFERADGGTLFLDEVGTLSFTAQGKLLRALQQ 379 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE+ERVG ++ +VNVR+V ATN +L V G FR DL RL +Q+PPLRER DI Sbjct: 380 GEIERVGDTRTRKVNVRVVAATNVNLREAVKAGHFREDLFFRLNVFPIQVPPLRERRDDI 439 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY-------- 238 LM +F +M R+ + GF ERA + + Y WPGN+REL+N++ER+V Sbjct: 440 PLMMNWFLQRMARKHDKHI-TGFRERAVDAMFAYDWPGNVRELENMIERAVILAEDGGAL 498 Query: 239 --RHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQ 296 H + D KR ++ + P + R + E +L+ ++ Sbjct: 499 DLCHLFTSGEEVDTTAFMLKRSGSIGRVSEASEAESPPSAAEGRPGLAETEVAMLRAAVA 558 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + N RAA +LG++ L+K+ I Sbjct: 559 EANGNLSRAARVLGISRPTLAYRLQKYGI 587 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 140/334 (41%), Positives = 187/334 (55%), Gaps = 30/334 (8%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +G +++ V EQ+S +AP VL+ GE GTGKEL A +H R +GPFISLNCA Sbjct: 195 GFVGNSDAMRLVYEQISQVAPSSTTVLLYGESGTGKELAAHAIHSAGKRSKGPFISLNCA 254 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL ENL++SELFGHE GAFTGA GRFE ADGGTLFLDE+ ++ Q KLLRV++ Sbjct: 255 ALPENLIESELFGHEKGAFTGASGIRKGRFELADGGTLFLDEVGELSLLTQAKLLRVLQE 314 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ER+GG++ L V+VR++ ATN DL MV EGTFR DL RL + +PPLRER++DI Sbjct: 315 RCFERLGGTESLSVDVRIITATNRDLARMVEEGTFRRDLYYRLNVFPIHMPPLRERQNDI 374 Query: 187 MLMAEYFAIQMCRE-----IKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 +A YF + I++ L + L Y WPGNIREL+NV+ER+V G Sbjct: 375 QPLAAYFVDKYAAANGRSGIRISLA------VMDMLQRYTWPGNIRELENVMERAVLLVG 428 Query: 242 TSDYPLDDII----------IDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELL 291 L + P + P + A S T L++ + E+ + Sbjct: 429 QDGLILPQHLPRELHSTHCPFGPAAHKGPVEPYAASGT---------LQDRLDELERACI 479 Query: 292 QLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +L + K + AA+ LGLT +KKH I Sbjct: 480 TDALARHKGHMGHAAQALGLTERVMALRMKKHGI 513 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 135/323 (41%), Positives = 182/323 (56%), Gaps = 24/323 (7%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + EV V +A VL++GE G GKEL+AS LHY S GPFI NCA Sbjct: 241 NIIGNSKPMQEVYAMVHKVASTKATVLLLGESGVGKELVASALHYNSPVADGPFIKANCA 300 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E L +SELFGHE GAFT A H G FE+A GGT+FLDE+ + Q KLLRV++ Sbjct: 301 ALPEALAESELFGHERGAFTSAIATHKGYFEQASGGTIFLDEVGELSLPTQAKLLRVLQE 360 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVGG++P++V+VR++ ATN +L MV EGTFR DL RL + +PPLR+R SD+ Sbjct: 361 RTFERVGGAKPVKVDVRIIAATNRNLAEMVAEGTFREDLFYRLNVFPITIPPLRDRGSDV 420 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR------H 240 + +A++F EI P+ + A L++Y WPGN+REL+NV+ERSV H Sbjct: 421 ITLADHFVTTYSAEIGKPI-KRISTPAINMLMSYHWPGNVRELENVIERSVILAEEGVIH 479 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 G D P P + P E S T L + E E++ +L+ Sbjct: 480 G-YDLP-------PSLQTPTETGTGFSGT---------LEDRVTAVEYEMIVEALKASNG 522 Query: 301 NQKRAAELLGLTYHQFRALLKKH 323 N +AA LGLT +++H Sbjct: 523 NVGQAATTLGLTRRMLGLRMERH 545 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 141/317 (44%), Positives = 185/317 (58%), Gaps = 11/317 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G+A V E V AP VLI+GE GTGKEL A LH S R FI +NCA Sbjct: 152 NIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFAQALHEESPRADKAFIKVNCA 211 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL+E LL+SELFGHE GAFTGA R GRFE ADGGTLFLDE+ +Q KLLRV++ Sbjct: 212 ALSETLLESELFGHEKGAFTGAIGRKEGRFELADGGTLFLDEIGDISPALQIKLLRVLQQ 271 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG+Q L+V+VRLV ATN DL A V G FR DL RL V LPPLR+R+ DI Sbjct: 272 REFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLYYRLNVVAVTLPPLRQRKGDI 331 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +F + + + G +L++ WPGN+REL+NVVER+V S+ Sbjct: 332 PALVSHFIDKYSKAYGKDIR-GLAPGTLNAVLSHDWPGNVRELENVVERAVVLCKGSELT 390 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 DD+ RP E A +P L +++++E L L + G + RAA Sbjct: 391 ADDLPPTLRGPRPRERAPG----ALIPGATL----YEIEREAILRTLEMVGG--STSRAA 440 Query: 307 ELLGLTYHQFRALLKKH 323 E+LG++ + + LK++ Sbjct: 441 EILGISVRKIQYRLKEY 457 >UniRef50_B3PJX0 Sigma54-dependent transcriptional regulator n=2 Tax=Proteobacteria RepID=B3PJX0_CELJU Length = 391 Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 133/334 (39%), Positives = 196/334 (58%), Gaps = 27/334 (8%) Query: 17 EVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSE 76 E+L+ + +AP + PVLI GE GTGKEL+A +H+LS R +GPF+++NC A+++ L +SE Sbjct: 37 ELLDYIERIAPSEAPVLIGGETGTGKELVARHIHHLSGR-KGPFLAVNCGAISDQLAESE 95 Query: 77 LFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQ 136 LFGHEAG+FTGA + G FE A+GGTLFLDE+ P+ +Q KLLRV++ E+ R+G + Sbjct: 96 LFGHEAGSFTGATGKREGWFEAANGGTLFLDEIGDLPLPLQVKLLRVLQEREVVRIGSRK 155 Query: 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQ 196 + V+VRLV ATN DL VN G FR DLL R+ V+LPPLRER DI+ +AEYF Sbjct: 156 SIPVDVRLVAATNVDLDYAVNAGHFRRDLLYRINIAHVRLPPLRERPGDILPLAEYFLRN 215 Query: 197 MCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPF- 255 + + P F+E++ + +L Y WPGNIREL+NV+ ++ G + + + Sbjct: 216 YSQRMSYKK-PVFSEQSIDLMLKYAWPGNIRELENVIHFALLVSGEDVIKPEHLKVTGGW 274 Query: 256 ----KRRPPE------DAIAVSETTSLPTLPLDLREFQMQQ--------------EKELL 291 RRP +++ SL PLD+ Q+++ E ++ Sbjct: 275 EHLDGRRPSSWNDHVPGSVSNGIGVSLNESPLDIIATQLRRLFKQGGDDAYFDCLESLIV 334 Query: 292 QLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + +NQ A LLG++ + R LLK+H + Sbjct: 335 HEAFGYSSHNQVHTAALLGISRNVMRTLLKRHGL 368 >UniRef50_A6DPB0 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPB0_9BACT Length = 307 Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 188/315 (59%), Gaps = 15/315 (4%) Query: 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 + ++ ++L +V+ +A + +P+LI GERGTGKEL+A+ LH SSR F+++NCAA Sbjct: 6 IAQSKVMQKLLAKVAKIAKVPRPILIRGERGTGKELMANYLHRASSRADEKFVTINCAAF 65 Query: 69 NENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 E L+ SE+FGHE GAFTGA ++ GR E+A+ G+LF+DE+ PM QE++LR +EY Sbjct: 66 TEKLIASEMFGHEKGAFTGANEQRIGRMEQANKGSLFMDEVGIMPMNFQEQILRAVEYQT 125 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 ERVG S+P++V+VRL+ ATNA+L ++ E FR DL DRL F ++LP LR+R+ DI Sbjct: 126 FERVGSSKPIKVDVRLISATNANLEELMEEKLFRRDLYDRLTFAEIELPSLRQRKDDIPA 185 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLD 248 + +F + E+ F E L++Y WPGNIRELKN+VER +Y G + Y + Sbjct: 186 LIVHFVKLLHEEMPSLQERKFRSSTVEVLMDYYWPGNIRELKNIVER-LYLFGDTPYIEE 244 Query: 249 DIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAEL 308 ++ A+ L D R + ++L+ + + NQ AA Sbjct: 245 ------------QELPAIISGADYIGLSFDDRVENFK--RKLILKAYEDCGGNQSEAARQ 290 Query: 309 LGLTYHQFRALLKKH 323 L +TY QFR +K+ Sbjct: 291 LQMTYSQFRHFYQKY 305 >UniRef50_A7HIN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Proteobacteria RepID=A7HIN1_ANADF Length = 484 Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 113/235 (48%), Positives = 170/235 (72%), Gaps = 3/235 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + L+G + + +EV +++ +A + VL++GE GTGKEL+A +H S+R +GPF+++N Sbjct: 160 ETLIGRSAAMIEVYKEIGRVARTEMTVLLMGESGTGKELVARAVHANSTRARGPFVTVNM 219 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ ++L++SEL+GHE G+FTGA +R PG+FE A GGTLFLDE+ P+ +Q KLLRV++ Sbjct: 220 AAIPKDLIESELYGHEKGSFTGAVERRPGKFELASGGTLFLDEIGEMPIELQAKLLRVLQ 279 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E++RVGG++PL V+VR+V ATNADL V EG FR DL RLA ++LPPLRERE D Sbjct: 280 EREVDRVGGTRPLPVDVRIVAATNADLARSVEEGRFRRDLYYRLAVVPIRLPPLREREGD 339 Query: 186 IMLMAEYFAIQMCREIK-LPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 ++L+A +F + ++K P+ A LL++ WPGN+REL+NVV+R++ + Sbjct: 340 VVLLARHFVAKYGEQLKGRPV--AIARDAEPLLLSHPWPGNVRELQNVVQRALLK 392 >UniRef50_Q2IEG0 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IEG0_ANADE Length = 520 Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 114/234 (48%), Positives = 155/234 (66%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G + V+E V APL+ VL++GE G GK++IA+ LH S R +GPFI +NC Sbjct: 196 DEVIGGSTGLRSVMELVRQAAPLNSTVLLLGETGVGKDVIANVLHDASPRREGPFIKVNC 255 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ E L+DSE+FGHEAGAFTGA+ H GRFERADGGT+FLDE+ P Q +LLRV++ Sbjct: 256 GAIPEGLVDSEMFGHEAGAFTGARAAHRGRFERADGGTIFLDEIGDLPKGAQVRLLRVLQ 315 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ERVGG++PL+V++R++ AT+ +L MV EG FR DL RL + +PPLR R D Sbjct: 316 SREIERVGGTRPLKVDIRVIAATHQNLQQMVTEGRFREDLFFRLNVLPINIPPLRLRAED 375 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 I + +F R + + P + A L Y WPGN+REL+NVVER + R Sbjct: 376 IPALVRHFVAVKRRGLGIRGTPTISPGALARLQAYAWPGNVRELENVVERELVR 429 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 135/324 (41%), Positives = 187/324 (57%), Gaps = 20/324 (6%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++L ++ EVLE + +A + VL+ GE GTGK ++A +H+ S R GPFI++NC Sbjct: 219 SSILSNSSRMQEVLEMIHRVAASNATVLLRGESGTGKSMVARAVHHNSKRAAGPFITVNC 278 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +AL E LL+SELFGHE GAFTGA + GRFE A+GGTLFLDE+ VQ KLL V++ Sbjct: 279 SALPETLLESELFGHERGAFTGAHETRKGRFELAEGGTLFLDEIGELSTAVQVKLLSVVQ 338 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E +RVGGS+PL+ +VRL+ ATN DL V EGTFR DL RL + LPPLRER +D Sbjct: 339 DREFQRVGGSRPLKCDVRLITATNKDLEKAVAEGTFREDLYYRLNVFPIYLPPLRERRTD 398 Query: 186 IMLMAEY----FAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 I+L+AE+ FA + + I+ P + L Y WPGN+REL+N +ER+V Sbjct: 399 ILLLAEFFLEKFASENDKNIRRISTPAI-----DLLTQYHWPGNVRELQNCLERAV---- 449 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 D+ I + P + S + + F E+EL+ +L++ N Sbjct: 450 ---LICDEDTIKSYHLPPTLQSSDSLREVSPSSFTAAVESF----ERELIIDALKKTDGN 502 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 Q RAA LL + +KK+ I Sbjct: 503 QTRAAALLETSLRIINYKIKKYAI 526 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 141/346 (40%), Positives = 197/346 (56%), Gaps = 26/346 (7%) Query: 2 AEYK-DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 +YK DN++G + + EV QV AP +L+ GE GTGKE+IA +HYLS R GPF Sbjct: 196 GKYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVIARAIHYLSPRKDGPF 255 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I +NCAAL+E LL+SELFGHE GAFTGAQ GRFE A GGTLFLDE+ Q KL Sbjct: 256 IKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLFLDEIGEISPAFQAKL 315 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E ERVGGS+ ++V+VRLV ATN DL V +G FRADL R+ + +PPLR Sbjct: 316 LRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINVVSIFIPPLR 375 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS---- 236 ER DI + E+F + E + + + +A + ++N WPGN+REL+N VER+ Sbjct: 376 ERREDIPYLVEHFLEKFRVENQRAMV-AMSPQAMKVMMNCYWPGNVRELENCVERTATMM 434 Query: 237 -------VYRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQ---- 285 V+ + L ++ +P +++P + E S P + E+ Q Sbjct: 435 RGDLITEVHFSCQQNKCLTKVLHEPGQQQPV--VVVPLERISAPYGAI-FAEWDGQGQAT 491 Query: 286 ------QEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 E+E L +++Q + Q +AA L ++ Q L+K I Sbjct: 492 GAAPPTSERERLIWAMEQCGWVQAKAARALNISPRQMGYALQKFNI 537 >UniRef50_B8DJ26 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=B8DJ26_DESVM Length = 542 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 114/246 (46%), Positives = 161/246 (65%), Gaps = 4/246 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++GE+ + +EV + +APLD VLI+GE GTGKEL + + LS R PF+ +NCAA Sbjct: 143 IIGESRAIMEVKALIEKVAPLDTTVLIMGESGTGKELASDTIRALSPRAAAPFVKVNCAA 202 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E+L ++ELFGHE GAFTGA PG+FE A GGTL LDE+ P+ +Q KLLRV+E Sbjct: 203 IPEHLFENELFGHEKGAFTGAATAQPGKFELAQGGTLMLDEIGDMPLAIQPKLLRVVEQK 262 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ++ER+GG +P+ ++VRL+ ATN +L V E FR DL RL VV LPPLR R+ DI Sbjct: 263 QVERLGGRKPISLDVRLIAATNQNLADRVREKAFREDLYYRLGVAVVHLPPLRSRKEDIP 322 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A++ ++ + LP+ G T A L +Y WPGN+R+L NV+ER+ ++ P+ Sbjct: 323 LLAQHVVRRLQGTLGLPVH-GLTPAAVAALCSYDWPGNVRQLANVIERAAI---AAEGPI 378 Query: 248 DDIIID 253 D +D Sbjct: 379 DAPDVD 384 >UniRef50_A5G2R6 Two component, sigma54 specific, transcriptional regulator, Fis family n=23 Tax=Bacteria RepID=A5G2R6_ACICJ Length = 472 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 129/313 (41%), Positives = 185/313 (59%), Gaps = 17/313 (5%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++ + + L+ + LAP PVL++GE GTGKE++A LH L R GPFI++NC A Sbjct: 151 VIAGSETMLKTCRTIEKLAPATAPVLLLGESGTGKEILARALHDLGPRADGPFIAINCGA 210 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E LL+SELFGHE GAFTGA K+ PGR E A GGTLFLDE+ P+ +Q KLLR ++ G Sbjct: 211 IPEPLLESELFGHEKGAFTGAIKQTPGRIELAQGGTLFLDEIGDLPLALQVKLLRFLQEG 270 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 +ERVGG +P+ ++ R+V AT+ DL +V G FR DLL RL V++PPLRER D + Sbjct: 271 VIERVGGRRPIPIDARIVSATHQDLDGLVAAGRFRLDLLFRLNIVSVRIPPLRERGGDAV 330 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A +F + ++ F+E A L+ + WPGN+REL+N V R+V Sbjct: 331 LLARFFLRRFAQDQNRQGL-AFSEAAIAALMRHGWPGNVRELENRVRRAVIMAEGQQIEA 389 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 D+ + +L LP DLR + + E+E +QL+L + + AA+ Sbjct: 390 ADLDL---------------ADGALAPLP-DLRSARREAEREAVQLALARADGSMVAAAK 433 Query: 308 LLGLTYHQFRALL 320 LLG++ AL+ Sbjct: 434 LLGISRPTLYALI 446 >UniRef50_B8J0D0 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrionaceae RepID=B8J0D0_DESDA Length = 379 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 119/249 (47%), Positives = 159/249 (63%), Gaps = 2/249 (0%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 MA D ++G++ S EV + + +AP D VL+ GE GTGKEL+ LH SSR PF Sbjct: 1 MALNTDGIIGQSTSLAEVFKVLGKVAPTDSTVLVTGESGTGKELLVRALHSNSSREDKPF 60 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + +NC A+ + LL+SELFGHE GAFT A + PGRFE ADGGT+FLDE+ + +Q K+ Sbjct: 61 VPINCGAIPKELLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLSLQVKI 120 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E+ERVGGS +V+VR+V ATN DL A V G FR DL RL + LPPLR Sbjct: 121 LRVLQEKEIERVGGSGSKKVDVRIVAATNRDLEAEVAAGRFREDLYYRLNVIPLHLPPLR 180 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVER-SVYR 239 ER D++++A +F C + K P+ + AR L Y WPGN+REL+N +ER S+ Sbjct: 181 ERGGDVLVLARHFLTHFCGKKKRPVLV-LDDDARRVLSAYTWPGNVRELENFMERLSILV 239 Query: 240 HGTSDYPLD 248 G +P D Sbjct: 240 DGDVVHPQD 248 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 129/321 (40%), Positives = 193/321 (60%), Gaps = 7/321 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G+ + L+V + + +AP D PVLI+GE GTGKEL+A L+ S R PF+++NC Sbjct: 142 EQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKELVARALYLHSPRSDKPFVAINC 201 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ + LL+SELFGHE GAFTGA +R G+FE+A GGT+FLDE+ P Q K+LR+++ Sbjct: 202 AAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTVFLDEIGDMPPAAQAKMLRLLQ 261 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ERVGG++ +Q +VR++ ATN DL A+V + FR DLL RL V LPPLR+R D Sbjct: 262 DQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFREDLLYRLNSFTVTLPPLRDRTGD 321 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + +F R++K + G A L ++RWPGN+REL+N + +V + Sbjct: 322 IEPLVSHFVTAANRKLKKNVR-GVDAAALAVLESHRWPGNVRELQNAMRYAVV-QAVGEV 379 Query: 246 PLDDIIIDPFK--RRPPEDAIAVSE--TTSLPTLPLDL-REFQMQQEKELLQLSLQQGKY 300 D + + PP DA+ ++ T+ L D+ R+ ++ LL L+ Sbjct: 380 ITPDCLPASLRGAAAPPGDALELTALITSLLRVGATDIYRQVTHTVDRALLTAVLEHVHG 439 Query: 301 NQKRAAELLGLTYHQFRALLK 321 NQK+AA+ LG++ RA L+ Sbjct: 440 NQKQAADRLGISRTTLRAKLQ 460 >UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YRB5_AZOPC Length = 521 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 126/320 (39%), Positives = 191/320 (59%), Gaps = 12/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++G + E+ V +AP + V+I GE G GKELIA +H SSR + PF+ +NC Sbjct: 203 DNMVGNSALMRELYGLVKRVAPTNSTVIIRGESGVGKELIAEAIHKASSRIKKPFVRVNC 262 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +AL ENL++SELFG+E GAFTGA+++H GRFE ADGGT+FLDE+A P VQ KLLR+++ Sbjct: 263 SALPENLIESELFGYEKGAFTGAERQHSGRFELADGGTIFLDEIADIPFSVQVKLLRILQ 322 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + ER+GG+ +Q +VR+V ATN +L M+ TFR DL R+ + +P LRER +D Sbjct: 323 QRQFERIGGTHTIQTDVRIVTATNRNLEEMLQNNTFREDLYYRIHVFPIYVPALRERRAD 382 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I ++ ++F IQ + T A + L+ Y WPGN+REL+NV+ER++ Sbjct: 383 ITILTDHF-IQKINKQNQTNVKRITSGALDMLMMYSWPGNVRELENVIERAMI------L 435 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 DD +I + P S+T + L L L + E++++ +L + N ++ Sbjct: 436 TTDD-VIHSYNLPPSLQTGVSSDTVKVGRLDLVLGKV----ERQMIMDTLIANRGNVAKS 490 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LG++ +K++ I Sbjct: 491 AFQLGISERVMGLRIKRYNI 510 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 137/321 (42%), Positives = 193/321 (60%), Gaps = 19/321 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N +G++ ++VL S A VLI GE GTGKE+IA +HY S R +GPFI +NC Sbjct: 252 NYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRRRGPFIRVNCG 311 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ LL+SELFGHE GAFTGA +R G+FE A+ GT+FLDE+ +Q KLLRV++ Sbjct: 312 AIPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNLQVKLLRVLQQ 371 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E +RVGG + + V+VR++ ATN DL AMV EGTFR DL RL + LPPLR+R DI Sbjct: 372 KEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRDRPDDI 431 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ E+F ++ +E K + G T A + ++YRWPGN+REL+NV+ER + T Sbjct: 432 PLLVEHFIEKISKENKKDV-RGITPDAMQMFMHYRWPGNVRELENVIERVITLMDT---- 486 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLP---TLPLDLREFQMQQEKELLQLSLQQG-KYNQ 302 D+I + IA E SL LP + + EK+++ +L+QG +N Sbjct: 487 --DLITAAMLPSYIKGDIAGREVQSLADDTVLPWE------EYEKQIIANALRQGTSFNG 538 Query: 303 KRAAELLGLTYHQFRALLKKH 323 AA+LL +++ A +K+ Sbjct: 539 --AAKLLRISHKTVAAKARKY 557 >UniRef50_Q5P474 Phenol-degradation regulator n=11 Tax=Betaproteobacteria RepID=Q5P474_AZOSE Length = 578 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 137/334 (41%), Positives = 193/334 (57%), Gaps = 28/334 (8%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G + F LE +S A VL++GE G GKEL A LH +S+R P +++NCA Sbjct: 233 DMIGTSPGFRAALELLSQAAASPISVLLLGETGVGKELFARALHEMSTRRDRPLVAINCA 292 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ +L++SELFG E GA+TGA PGRFERADGGTLFLDE+ P+ Q KLLRV++ Sbjct: 293 AIPHDLVESELFGVEKGAYTGALVSRPGRFERADGGTLFLDEIGELPLTAQSKLLRVLQE 352 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE+ER+G + ++NVRLV ATNA LP +V EG FRADL RL + +PPLRER DI Sbjct: 353 GEVERLGDDRIRKINVRLVAATNAGLPQLVKEGRFRADLYYRLNAYPINIPPLRERREDI 412 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR--HGT-- 242 ++A++F ++ I GFT++A+ L Y WPGNIREL+N VER V HGT Sbjct: 413 SVLAKHF-LEKHAAINGKKLLGFTDKAKRALTTYAWPGNIRELQNTVERGVILAPHGTRI 471 Query: 243 -------------SDYPLD-DIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEK 288 ++ LD D +D + + ++ + T+ LD E Sbjct: 472 EVEHLFLSWGDEAREFGLDPDGKLDAGE---GDAGKSICDAVCDGTMTLD------HVEA 522 Query: 289 ELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKK 322 L++ + + + N AA +LGL+ Q LK+ Sbjct: 523 MLIEAATDKARGNLSSAARMLGLSRPQLAYRLKR 556 >UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXP1_9BACT Length = 455 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 126/308 (40%), Positives = 186/308 (60%), Gaps = 10/308 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G +++ +++E V ++ D +LI GE GTGKE IA +HY S R GPFI ++CA Sbjct: 142 NIVGSSHAMKKLIETVKEISDRDSTILIQGESGTGKEKIAGAVHYHSGRKMGPFIRVSCA 201 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ALN +L+SELFGHE G+FTGA K GRFE A+GG++FLD++ P+ +Q KLLRVI+ Sbjct: 202 ALNREILESELFGHEKGSFTGAIKTRRGRFELANGGSIFLDDVDDIPLDMQVKLLRVIQE 261 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVGG + L +NVR++CAT DL + +G FR DL RL + +PPLRER+ DI Sbjct: 262 RTFERVGGEKTLSINVRIICATKKDLLLLAKKGEFREDLFYRLNVVPITIPPLRERKDDI 321 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV---YRHGTS 243 + YF + + L PG + L+ Y WPGN+REL+NV+E +V + HG + Sbjct: 322 PRLINYFLKKFVSRHEDAL-PGVSRETLNVLMEYNWPGNVRELENVIEHAVAFSHSHGIT 380 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 D + D KR + + ++ T + L + + EK L++ + Q+ NQ Sbjct: 381 ----IDTLPDYLKRVEIHKKLISMDLSNTQT--IQLHDVLTEVEKRLIEWAHQKTNGNQV 434 Query: 304 RAAELLGL 311 + AE+LG+ Sbjct: 435 KMAEILGI 442 >UniRef50_C0GUF2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUF2_9DELT Length = 554 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 131/321 (40%), Positives = 191/321 (59%), Gaps = 5/321 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G +V+ V +APL+ PVL+ GE GTGKE+ A+ LH S R GPFI +NC Sbjct: 236 NRIVGAEFGLRQVMRMVRQVAPLESPVLLQGETGTGKEIFANALHAASLRSDGPFIKVNC 295 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 L E+L+DSELFGHE GAFTGA R+ GRFERAD GT+FLDE+ P+ +Q KLLRV++ Sbjct: 296 GGLPESLVDSELFGHEKGAFTGAISRNRGRFERADKGTIFLDEIGELPLNIQAKLLRVLQ 355 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ERVGGS+ + V+VR++ AT+ +L MV G FR DL RL + +PPLR+R D Sbjct: 356 QNEIERVGGSRTIPVDVRIISATHRNLEQMVQRGEFREDLWFRLNVFPIMIPPLRQRPQD 415 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + + ++ + CRE+K+ + L WPGN+REL+N+VER++ +D Sbjct: 416 LPALLDHLVSRKCREMKITREIRIPSGTMDRLKKRAWPGNVRELQNLVERTLI-QAHADN 474 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ-KR 304 P D +++ + +I + TS T L E + K+ L+++ +GK Sbjct: 475 P-DSAVLNLDLAVSGQKSIETNLETSGNTQVLTFEEAAARHIKKALEVA--RGKITGPGG 531 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AAE+LGL R ++K I Sbjct: 532 AAEILGLNPSTLRGKMRKLNI 552 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 227 bits (579), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 137/316 (43%), Positives = 188/316 (59%), Gaps = 12/316 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ + +L ++ +AP D VLI GE GTGKEL+A LH S+R + P + LNCA Sbjct: 140 GMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVARALHASSARSRRPLVILNCA 199 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ALNE+LL+SELFGHE GAFTGA KR GRF ADGGTLFLDE+ ++Q +LLR I+ Sbjct: 200 ALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQE 259 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++RVG +Q L V+VRL+ AT+ DL V+ G FR DL RL + +PPLR R DI Sbjct: 260 REVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVTIDMPPLRHRREDI 319 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +A YF +Q E GFT +A + L++Y WPGNIREL+N VER+V T +Y Sbjct: 320 PPLARYF-LQRYAERNRKAVQGFTPQAMDLLIHYAWPGNIRELENAVERAVVLL-TGEYI 377 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + P DA ++ PL ++ EKE + +L++ N+ AA Sbjct: 378 SERELPLAITGTPVADAPHGDDSIQ----PL------VEVEKEAILAALERTGGNKTEAA 427 Query: 307 ELLGLTYHQFRALLKK 322 LG+T A L + Sbjct: 428 RRLGITRKTLLAKLSR 443 >UniRef50_C0QMI0 Sigma-54 dependent two component transcriptional regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QMI0_DESAH Length = 524 Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 120/270 (44%), Positives = 162/270 (60%), Gaps = 2/270 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G V+E V+ +A L+ PVL++GE G GKE+IA +H S R GPFI +NC A Sbjct: 196 IVGSDGGLKGVMESVAQVAALNSPVLLLGETGVGKEVIAKAIHMASGRRSGPFIKVNCGA 255 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E+L+DSELFGHE GAFTGA R GRFERA GT+FLDE+ P+ Q +LLRV+E Sbjct: 256 IPESLIDSELFGHEKGAFTGALSRKLGRFERAHLGTIFLDEIGELPLDAQTRLLRVLEDM 315 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E+ERVGG + + ++ R++ ATN DL AM+ FR DL RL +++PPLR+R++DI Sbjct: 316 EIERVGGDETVSIDSRVLAATNRDLDAMIKNRQFREDLYFRLKVFPIEIPPLRDRKTDIP 375 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + YF + +EI P P + L+ Y WPGNIREL+N VER++ Sbjct: 376 ALVHYFMHKKAKEIAFPGIPALALNSLPILMAYDWPGNIRELENAVERALITCRGMPLSF 435 Query: 248 DDI--IIDPFKRRPPEDAIAVSETTSLPTL 275 DD+ I P K V T L TL Sbjct: 436 DDLATAIGPKKGMIAPKDTDVEATDGLSTL 465 >UniRef50_C9YE96 Transcriptional regulatory protein xylR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YE96_9BURK Length = 604 Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 117/231 (50%), Positives = 155/231 (67%), Gaps = 1/231 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 L+G +++F V +AP VL GE G GKE+ A LH S R PF+++NCA Sbjct: 267 TLVGASSAFNAAFHMVRRVAPTPATVLFTGESGVGKEMFARSLHRNSDRAARPFVAINCA 326 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E L++SELFG E GAFTGA PGRFERADGGTLFLDE+ T ++ Q KLLR ++ Sbjct: 327 AIPETLIESELFGVERGAFTGAGASRPGRFERADGGTLFLDEIGTLSLVAQGKLLRALQE 386 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE+ERVGG++ ++VNVR+V ATN L V +G+FR DL RL + LPPLRER DI Sbjct: 387 GEIERVGGTKTVKVNVRVVAATNEHLREAVRKGSFREDLFYRLNVFPIHLPPLRERRDDI 446 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 L+ ++F + RE PGF++RA + L NY +PGNIREL+N++ER+V Sbjct: 447 PLLMQHF-LNHYRERYQREVPGFSQRAVKALFNYGFPGNIRELQNLIERAV 496 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 128/344 (37%), Positives = 202/344 (58%), Gaps = 28/344 (8%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +L+G+A S ++ E++ +A VLI GE GTGKE+IA+ +HY SSR + PF+ +NCA Sbjct: 363 SLIGKAASMEKMFEKIQLVADSRASVLITGESGTGKEMIANAIHYNSSRSENPFVKINCA 422 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENLL+SELFGH+ G+FTGA G+FE AD GT+FLDE+ + +Q KLLRV++ Sbjct: 423 AIPENLLESELFGHKKGSFTGAVTDKKGKFELADTGTIFLDEIGEMDLNLQSKLLRVLQE 482 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+E +G ++ +V+VR++ ATNA+L +V E FRADL RL + PPLR+R DI Sbjct: 483 REIEAIGSTKAKKVDVRIIAATNAELEQLVAEKKFRADLFYRLNVVKINTPPLRDRVEDI 542 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY---RHGTS 243 L+ +F + ++ + G + A LL YRWPGN+REL+NV+ER+V + Sbjct: 543 PLLMNHFLEKYTKDNNKSI-KGISREASRLLLKYRWPGNVRELENVIERAVVLAQDEILN 601 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTL----PLDL---------------REFQM 284 + DI+ + P++ + VS + + ++ PLDL R ++ Sbjct: 602 EEDFSDILSN--MEEMPDNTVEVSHSNHVESVSGAEPLDLGSGRLTSGQLDGLDGRAMEI 659 Query: 285 ---QQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + E L+Q ++++ +Y + R A+ LG+ + +K+ I Sbjct: 660 VVSEVESRLIQYAMKKFRYTKTRVAKFLGINRNTLDKKIKELNI 703 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 227 bits (579), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 127/325 (39%), Positives = 189/325 (58%), Gaps = 23/325 (7%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G++ + + + + + +AP + VLI GE GTGKE++A +H+ S R P++++NCA Sbjct: 141 NIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKSIHFNSHRKDAPWVAVNCA 200 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E++L+SELFGHE GAFTGA GRFE ADGGTLFLDE+ +Q KLLRV++ Sbjct: 201 ALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQE 260 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVGG +P++V++RL+ ATN DL V FR DL RL +QLPPLRER+ DI Sbjct: 261 KTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDI 320 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARET-------LLNYRWPGNIRELKNVVERSVYR 239 L+ ++F +Q K P R R+ Y WPGN+REL+NV+ER++ Sbjct: 321 PLLVDHF-LQ-----KYASGPSGESRVRKVHPDVHRLFQEYAWPGNVRELENVIERAIIL 374 Query: 240 HGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLD--LREFQMQQEKELLQLSLQQ 297 + ++D+ P E +VS T + +P+D L E E+ +++ ++ Sbjct: 375 CNSDAISVNDL--------PRELTRSVSNTLHMEGIPVDATLYETLSMVEQAMIKRAMLM 426 Query: 298 GKYNQKRAAELLGLTYHQFRALLKK 322 Q AA++LG+ +KK Sbjct: 427 SDNVQSHAAQILGIGKSGLNQKIKK 451 >UniRef50_D2QRC3 Sigma 54 interacting domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRC3_9SPHI Length = 657 Score = 227 bits (578), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 138/319 (43%), Positives = 187/319 (58%), Gaps = 14/319 (4%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G L L+ V+ +AP + VLI+GE GTGKE IA +H LS R GPFI +NCAA Sbjct: 338 IIGNHPLLLAALDLVTQVAPYNTSVLILGESGTGKESIAQAIHSLSVRKTGPFIKVNCAA 397 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + L++SELFGHE GAFTGA ++ G+FE++ GTLFLDE+ P+ +Q +LLRV++ Sbjct: 398 IPAALIESELFGHEKGAFTGAIEKRKGKFEQSHEGTLFLDEIGEMPLDMQVRLLRVLQEK 457 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++ VGG P +V+VR+V ATN +L V EG FR DL RL + LPPLRER+SDI Sbjct: 458 EIDPVGGKSPKKVDVRVVAATNRNLEREVAEGRFRLDLYYRLNVFPITLPPLRERKSDIQ 517 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY-RHGTSDYP 246 ++ Y A + C+E F G + + L Y WPGNIREL+NV+ERSV G S+ Sbjct: 518 ALSVYVANRFCKEFSKD-FNGISAGMMDELEGYTWPGNIRELENVLERSVILNDGQSELE 576 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGK---YNQK 303 L ++ + P + AI ET D+R Q + E+E L L+ K Sbjct: 577 LKQSLLGTTDKVPSKVAI---ETLG------DVRRIQRETEREYLISVLKNTKGLIRGAN 627 Query: 304 RAAELLGLTYHQFRALLKK 322 AAELL + A L K Sbjct: 628 GAAELLHIKPTTLEARLAK 646 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 227 bits (578), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 129/322 (40%), Positives = 191/322 (59%), Gaps = 18/322 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++GE+ ++ + +SH++ + +LI GE GTGKEL+A +HY S+R F+ ++C+ Sbjct: 142 NIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELVAKAIHYNSARNNHRFVKVDCS 201 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 +L E LL+SELFGHE GAFTGA K GRF +AD GT+FLDE+ + VQ KLLRV++ Sbjct: 202 SLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIFLDEIGNISLAVQAKLLRVLQD 261 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E E VG + ++V+VR++ ATNADL V +G FR+DL RL + LPPLRER DI Sbjct: 262 SEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFYRLNVIRIFLPPLRERTEDI 321 Query: 187 MLMAEYF-AIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 L+A +F AI + K GF+ L +Y WPGNIREL+NV+ER+V Sbjct: 322 PLLAAHFLAIHNKKNRK--TVEGFSRDTLNILTSYAWPGNIRELENVIERAV-------- 371 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETT-SLPTLPLD-LREFQMQQEKELLQLSLQQGKYNQK 303 I+ R PED E + P L L+E Q E++++ +L+ +++ Sbjct: 372 -----ILCKKNRITPEDVPLYQEKMGTRPGLSGKPLQELLEQTERQIIINTLEANDADKE 426 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 + A++L ++ L K++I Sbjct: 427 KTAKILKISRASLYNKLNKYKI 448 >UniRef50_Q01W56 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01W56_SOLUE Length = 552 Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 137/325 (42%), Positives = 188/325 (57%), Gaps = 21/325 (6%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 +A + + GE+ + ++L V+ +AP + VLI+GE G GKEL+A LH LS R PF Sbjct: 236 LAVSEPGIAGESIAIHKLLGLVARVAPQEASVLILGESGVGKELVAHALHRLSPRAARPF 295 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 +++NCAAL E LL+SELFGHE GAFTGA + G+ E A+GGT+FLDE+ +Q KL Sbjct: 296 VAINCAALTETLLESELFGHEKGAFTGAVAQKKGKLEMAEGGTVFLDEIGELAAPLQAKL 355 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E ERVGG+ +++VRLV ATN DL A V G FR DL RL +++PPLR Sbjct: 356 LRVLQQREFERVGGTHTWKLDVRLVAATNRDLAAEVQRGAFREDLYHRLNVVALRVPPLR 415 Query: 181 ERESDIMLMAEYF---AIQMC-REIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS 236 ER DI+ +A YF AI C R IK G E LL Y WPGN+REL+N +ER+ Sbjct: 416 ERPGDILPLARYFLDRAIPRCGRMIK-----GIAPETEECLLAYSWPGNVRELENAIERA 470 Query: 237 VYRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQ 296 V T +D+ PE V E + P P L +++L+ + + Sbjct: 471 VVLGDTDWIQPEDL---------PE---TVLEHGAAPQPPGALSNSVADTKRQLILAAWR 518 Query: 297 QGKYNQKRAAELLGLTYHQFRALLK 321 Q + RAAE L + + R L++ Sbjct: 519 QSGGDHDRAAERLNIHPNSLRRLIR 543 >UniRef50_A6CG13 Ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator (Fragment) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CG13_9PLAN Length = 604 Score = 226 bits (577), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 116/234 (49%), Positives = 154/234 (65%), Gaps = 1/234 (0%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 E + L+G++ S + Q+ +AP D VLI GE G GKEL+A +H+ S R + PF+ Sbjct: 361 ELESELVGKSPSMTAMKAQILRIAPTDASVLIRGESGVGKELVARAIHFNSQRKKQPFVC 420 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAAL+E LL+SELFGHE GAFTGA + PG+FE+A GTLFLDE+ + VQ K LR Sbjct: 421 MNCAALSEGLLESELFGHEKGAFTGATGQKPGKFEQAHKGTLFLDEVGEMSLGVQAKFLR 480 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V+E ERVGGS + V+VR+V ATN D+ V +G FR DL RL V + PLR R Sbjct: 481 VLEGHSFERVGGSVSINVDVRVVAATNRDMEKAVAKGIFRQDLYFRLHVVEVSVDPLRVR 540 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS 236 DI+L+A+YF + + P+ GFTE A+E L Y WPGN+REL+N +ER+ Sbjct: 541 ADDILLLADYFLNRFVVKTGRPI-RGFTEEAKELLEAYHWPGNVRELQNTIERA 593 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 226 bits (577), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 140/328 (42%), Positives = 186/328 (56%), Gaps = 11/328 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G+ EV + ++ +AP L++GE GTGKEL+A +H R PFI LNCA Sbjct: 203 NIIGQCKRIQEVYDYIAKVAPSRATALLLGESGTGKELVARAIHQAGPRAGEPFIKLNCA 262 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL ENLL+SEL GHE GAFTGA + GRFE ADGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 263 ALPENLLESELLGHEKGAFTGAVGQKKGRFELADGGTLFLDEIGELPLALQAKLLRVLQE 322 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ER+GGS+ + V+VR++ ATN L A V EG FRADL RL V LPPLRER DI Sbjct: 323 RTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVFRADLYYRLNVVPVVLPPLRERREDI 382 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ ++F + R + + F L Y WPGN+REL+N+VER V Sbjct: 383 PLLLDHFLRESNRHNRRRV--KFAAAVIRRLNEYSWPGNVRELQNLVERLVIMVDGEVVN 440 Query: 247 LDDIII-----DPFKRRPP----EDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQ 297 LDD+ DP RR P + AV S + + EKE + +L++ Sbjct: 441 LDDLPAYLADPDPANRRCPRGFADQPAAVLPAPSWVDQGMAAGRSLWEMEKEEVLAALRR 500 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 + Q RAA LG+T Q ++K+ I Sbjct: 501 HGWVQTRAARDLGITPRQMGYRIRKYAI 528 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 226 bits (577), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 132/326 (40%), Positives = 187/326 (57%), Gaps = 17/326 (5%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 Y D + G+ +EV + + A D VLI GE G GKE+ A +HYLS R PF+++ Sbjct: 418 YLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAI 477 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLR 122 NCAA+ ENLL+SELFG+E GAFTGA++ G+ E+ADGGTLFLDE+ P+ +Q KLLR Sbjct: 478 NCAAIPENLLESELFGYEEGAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLR 537 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 I+ E ER+G + P +V++R++ ATN L +V EG FR DL RL + +PPLRER Sbjct: 538 FIQNREFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRER 597 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGF-TERARETLLNYRWPGNIRELKNVVERSVYRHG 241 DI L+ F + C K+ P T A L+NY WPGNIREL+NV+ER+ Y Sbjct: 598 RDDIPLLVNRFMNEFCERRKMA--PKIVTSEAMNILMNYSWPGNIRELQNVIERAYYLA- 654 Query: 242 TSDYPLDDIIIDP--FKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGK 299 + +I P + A++ T + T +E + EK+L+ L+ Sbjct: 655 ------EGNLIKPEHLPAQLTSKALSGERITKITT----FKEAVAEVEKKLIIEGLKATN 704 Query: 300 YNQKRAAELLGLTYHQFRALLKKHQI 325 YN+ A+LLG+ +K++ I Sbjct: 705 YNKLACAKLLGIPRATLYQKIKEYGI 730 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 226 bits (577), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 127/308 (41%), Positives = 183/308 (59%), Gaps = 8/308 (2%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ +L + L+ D LI+GE GTGKEL+A +H SSR + PFI +NCAA Sbjct: 2 IIGQSIQIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQKSSRAEKPFIPVNCAA 61 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + LL+SELFGHE GAFTGAQ GRFE A+ GT+FLDE+ P+ +Q K+LRVI+ Sbjct: 62 IPSELLESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQEK 121 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ER+GG++P+QVNVR++ ATN DL V EG FR DL RL V +PPLRER+ DI Sbjct: 122 TFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDIP 181 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+ EYF + + L + LNY WPGN+REL+N++ER + + + Sbjct: 182 LLCEYFINKFSHKFGYSL--QIKPEVMQIFLNYTWPGNVRELENLIERLYVLNEGGNINI 239 Query: 248 DDIIIDPFKRRPPEDAIA---VSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 DI P + R E++ + + + + +DL E + EK+L+ +L + + R Sbjct: 240 KDI---PERIRFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHGWIKSR 296 Query: 305 AAELLGLT 312 AA+ L + Sbjct: 297 AAKYLNIN 304 >UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria RepID=NIFA_AZOBR Length = 625 Score = 226 bits (577), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 117/231 (50%), Positives = 152/231 (65%), Gaps = 2/231 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++++ + + LEV+ QV +AP VLI GE GTGKELIA +H +S R PFI +NC Sbjct: 203 NDVVCTSPNMLEVMAQVHRVAPFKSTVLIRGESGTGKELIARAIHNMSPRKDAPFIRVNC 262 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL E+LL+SELFGHE GAFTGAQK H GRFE A GGTLFLDE+ Q KLLRV++ Sbjct: 263 AALPESLLESELFGHEKGAFTGAQKDHKGRFELASGGTLFLDEIGDISPNFQAKLLRVLQ 322 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVGGS+ ++ +VRL+CATN +L V G FRADL R+ + LPPLRER D Sbjct: 323 EQEFERVGGSKTIKTDVRLICATNLNLEEAVGHGKFRADLYFRINVVTIHLPPLRERRQD 382 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS 236 I +A +F + ++ + L + A E L WPGN+REL+N +ER+ Sbjct: 383 IGPLARHFVAKFAKDNGMALV--MEDEALEVLNRCTWPGNVRELENCIERA 431 >UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C585F Length = 643 Score = 226 bits (576), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 131/309 (42%), Positives = 179/309 (57%), Gaps = 11/309 (3%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + + ++GE+ ++ QV +A VL+ GE G+GKEL+A +H S R +G FI Sbjct: 330 KIESEIVGESAVLQQIESQVVRVAETRATVLVRGESGSGKELVARAIHLHSPRREGAFIC 389 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 LNCAAL E LL+SELFGHE GAFTGA +R G+FE AD GT+FLDE+ + Q K LR Sbjct: 390 LNCAALTETLLESELFGHEKGAFTGATERMVGKFEAADNGTIFLDEIGEMALSTQAKFLR 449 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V+E ERVGG+ ++V+VR+V ATN L V GTFR DL RL + +PPLR+R Sbjct: 450 VLEGHPFERVGGNTAIKVDVRVVAATNRPLEEAVRAGTFRRDLFYRLQVVQLDVPPLRDR 509 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 D+ L+AE+F + RE F GFT A + L YRWPGN+REL+NV+ER+V Sbjct: 510 LDDVPLLAEHFLKRFARETARK-FKGFTPEALDKLRAYRWPGNVRELRNVIERAVALGNG 568 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 DI + D A + +L P + E EK + +L+ +N+ Sbjct: 569 PQLDAADIWLSGL------DVGAPVVSAALVYKPETIEEV----EKRHILETLKHTDWNK 618 Query: 303 KRAAELLGL 311 RAA +LG+ Sbjct: 619 SRAATILGI 627 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 124/319 (38%), Positives = 185/319 (57%), Gaps = 12/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + + + +A L++GE G GKEL+AS +H+ S R + PFI NCA Sbjct: 236 NIIGNTKPMVSLYSMIDKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEKPFIKFNCA 295 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL EN+++SELFGHE GAFTGA GRFE A+ GT+FLDE+ + VQ KLLR+++ Sbjct: 296 ALPENIVESELFGHEKGAFTGALATRHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQE 355 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGGS+ ++V+VR++ ATN +L ++ +G FR DL RL + +PPLRER++DI Sbjct: 356 KEFERVGGSKTIKVDVRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTDI 415 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +L+A+YF ++ + + A + L+ Y WPGN+REL+N +ER+V Sbjct: 416 LLLADYF-VEKYNKANQKGVRRISTTAIDMLMRYHWPGNVRELQNCIERAVILS------ 468 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 +D +I + P S T +L L EKE++ +L++ + N RAA Sbjct: 469 -EDNVIHGYHLPPTLQTAESSGTPYTGSLQQKLDAI----EKEMIIEALKRTQGNMSRAA 523 Query: 307 ELLGLTYHQFRALLKKHQI 325 LGL+ +KK I Sbjct: 524 MQLGLSERIMGLRIKKFNI 542 >UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJY4_THEYD Length = 421 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 126/320 (39%), Positives = 183/320 (57%), Gaps = 11/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + L+G + +V + A D VLI GE GTGKEL+A +H LS R + PFI +NC Sbjct: 111 NGLIGISRIMEDVYCGIRKAALTDSNVLITGESGTGKELVARAIHNLSERKENPFIVINC 170 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ + LL+SELFG E GAFTGA G E AD GTLF DE+ + Q K+LRVI+ Sbjct: 171 TAIPDTLLESELFGFEKGAFTGANYTKKGLIEWADRGTLFFDEIGDVSPLFQTKILRVIQ 230 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE R+GG+ P++V+VR + ATN DL EG FR DL RL +++PPLR R+ D Sbjct: 231 EGEFIRIGGNHPVKVDVRFIAATNKDLSKACKEGVFREDLFYRLNVIHIEIPPLRSRKED 290 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + ++F + + K G TE A + L++Y +PGN+REL+N++ER++ + + Sbjct: 291 IPSLTQFFIKKHSAKRKDINIKGITEEALDALMSYSFPGNVRELENIIERAIAFTNSVEI 350 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + D+ P + + P +LRE EKEL+ +LQ+ + N +A Sbjct: 351 TIKDL---------PAYLLKTQHSKKTP--HGNLREAVDNFEKELIWSALQKSRGNISKA 399 Query: 306 AELLGLTYHQFRALLKKHQI 325 AELLG+ Q + LK+ +I Sbjct: 400 AELLGIHRQQLQRKLKQFKI 419 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 133/318 (41%), Positives = 190/318 (59%), Gaps = 18/318 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + + +L +++ +AP D VLI G+ GTGKEL+A LH S+R P ++LNCA Sbjct: 140 GMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDKPLVTLNCA 199 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ALNE+LL+SELFGHE GAFTGA KR GRF ADGGTLFLDE+ ++Q +LLR I+ Sbjct: 200 ALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQE 259 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++RVG +Q + V+V L+ AT+ DL V+ G FR DL RL +++P LR+R DI Sbjct: 260 REVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDI 319 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A++F ++ E GFT +A + L++Y WPGNIREL+N +ER+V T +Y Sbjct: 320 PLLADHF-LRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL-TGEY- 376 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQ--MQQEKELLQLSLQQGKYNQKR 304 R AIA + P + E Q + EKE++ +L++ N+ Sbjct: 377 --------ISERELPLAIAAT-----PIKAENSAEIQPLVDVEKEVILAALEKTGGNKTE 423 Query: 305 AAELLGLTYHQFRALLKK 322 AA LG+T A L + Sbjct: 424 AARQLGITRKTLLAKLSR 441 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 124/306 (40%), Positives = 183/306 (59%), Gaps = 2/306 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++GE + ++ +A D VL++GE GTGKEL A +H LS R PF++LNCAA Sbjct: 142 IIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKELFARAIHQLSIRSTQPFVALNCAA 201 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E L+++ELFGHE GAFTGA R G+FE A+ GT+FLDE+ P+ +Q KLLRV+E Sbjct: 202 MPEGLIENELFGHEKGAFTGANTRKSGKFEMANRGTIFLDEIGELPLNLQSKLLRVLEEH 261 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 +ER+G + PLQ++VR+V ATN +L V G FR DL RLA +++PPLRER D++ Sbjct: 262 VVERLGSTMPLQLDVRVVAATNRELEQAVEAGAFRRDLYYRLAVFPIRIPPLRERGEDVI 321 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+AE+F +E+K P A L + WPGN+REL+N +ER+ H T + Sbjct: 322 LIAEHFLAHFRQELKKPRL-SLAPDALAALRAHLWPGNVRELQNTIERAAILHDT-EVTA 379 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 D+ + R ++ +LP + EK ++ +L++ K+N+ AAE Sbjct: 380 ADLGLSANLRSAAAVSLGEHSIDMGGSLPEVSAQASRTIEKAKIEATLRECKWNKSAAAE 439 Query: 308 LLGLTY 313 LG++Y Sbjct: 440 RLGISY 445 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 113/229 (49%), Positives = 154/229 (67%), Gaps = 1/229 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G + S ++E++ +AP D VLI GE GTGKEL+A +H S R PF+ LN Sbjct: 157 EGVIGNSPSMHRLIEKLRSVAPTDSTVLIQGESGTGKELVARAIHQNSERKNKPFVPLNI 216 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +AL E++L+SELFGHEAGAFTGA + G+FE A+GGTLFLDE+ PM Q KLLRV+E Sbjct: 217 SALPESILESELFGHEAGAFTGAATKRIGKFEYANGGTLFLDEVGEMPMATQIKLLRVLE 276 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + R+G + + +NVRLV ATNADL M+ +GTFR DL RL+ + LPPL +R +D Sbjct: 277 ERRITRLGANDEIPINVRLVAATNADLQDMIKKGTFRKDLYFRLSVVTIVLPPLSDRRAD 336 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVE 234 I + ++F Q K P+ P T + ++ L+ Y WPGNIREL+NVVE Sbjct: 337 IPFLIDHFLKQFAERQKRPI-PTVTRQVQQALMAYAWPGNIRELRNVVE 384 >UniRef50_C1DCJ9 Probable transcriptional regulatory protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DCJ9_LARHH Length = 465 Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 126/319 (39%), Positives = 181/319 (56%), Gaps = 14/319 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 + +G+++S L++ E + +A D VL+ GE GTGKE++ LH LS R +GPF+ +NCA Sbjct: 143 DFVGQSSSLLKLKEDIRKVATTDVSVLVTGESGTGKEMVTRLLHALSPRREGPFVPVNCA 202 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ L+ SELFG+E GAFTGA +R GR E AD GTLFLDE+ +Q LLR ++ Sbjct: 203 AIPATLIQSELFGYEKGAFTGANQRKIGRIEAADNGTLFLDEIGDLARDLQANLLRFLQE 262 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 G +ERVG + VNVR+V AT+ DLPA + EG FR DL RL + +PPLRER+ DI Sbjct: 263 GTIERVGAATSKAVNVRVVSATHVDLPASIREGNFREDLYYRLNVCHLHIPPLRERKDDI 322 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +L+AE F + +LP F ++L +RWPGN+REL+N V + Sbjct: 323 VLLAERFLAEFIARERLPA-KRFASETIASMLAHRWPGNVRELQNRVSQGA--------- 372 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 ++ + P D S + L E + E+E LQ +L ++N +AA Sbjct: 373 ----VMSSGRLVQPADMGLASSGLEESVVWQTLDEIRGDAEREALQRALVLSRHNHSQAA 428 Query: 307 ELLGLTYHQFRALLKKHQI 325 LG++ LL+KH + Sbjct: 429 TQLGISRATLYRLLEKHNL 447 >UniRef50_B2JEB5 Two component, sigma54 specific, transcriptional regulator, Fis family n=68 Tax=Betaproteobacteria RepID=B2JEB5_BURP8 Length = 503 Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 124/305 (40%), Positives = 185/305 (60%), Gaps = 12/305 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 +LG + +V +Q+S +AP V+++GE GTGKE+ A LH LS R + F+++NC A Sbjct: 176 MLGNSAVMQQVYDQISRVAPTAASVMLVGESGTGKEVAAQTLHQLSLRRKHAFLAVNCGA 235 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 ++ NL++SE+FGHE GAFTGA ++H G FERA+GGTLFLDE+ P+ +Q KLLRV+E G Sbjct: 236 ISPNLIESEMFGHERGAFTGADRQHKGYFERANGGTLFLDEITEMPIELQVKLLRVLETG 295 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 RVG ++ ++ +VRL+ ATN D V EG R DL RL + LPPLRER D+ Sbjct: 296 MFMRVGTTKEIETDVRLIAATNRDPEQAVLEGKLRLDLYHRLNVFPISLPPLRERGKDVE 355 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A+ F ++ + F RE LL+Y WPGN+RELKN V+R+ GT Sbjct: 356 LLAQSFLDELNEQHGTKKH--FPPAVREMLLSYPWPGNVRELKNYVQRAHIMSGTDS--- 410 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 D P + I++S+ T+ + + + +++L+ +L+Q + RAAE Sbjct: 411 DSTATVPLQ-------ISLSKPTAGTAITIPFGTSLAEADRQLILATLEQCGGVKTRAAE 463 Query: 308 LLGLT 312 +LG++ Sbjct: 464 ILGIS 468 >UniRef50_Q6ALT7 Related to two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ALT7_DESPS Length = 453 Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 126/320 (39%), Positives = 181/320 (56%), Gaps = 12/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +NL+G L+V ++V+ +A + VLI GE GTGKEL+A +H S+R GP I +NC Sbjct: 139 ENLIGRNIKMLDVYQKVNDVAVANTTVLITGETGTGKELVAEAIHSRSARKSGPLIRVNC 198 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA E L++SELFG+E GAF+GA G FE AD GT+ LDE+ P+ Q LLR+++ Sbjct: 199 AAFTETLINSELFGYEKGAFSGAMALKKGCFELADNGTILLDEIGDIPLQTQTCLLRLLD 258 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 G +RVGG + L+ N R++CATN DL MV E FR DL R+ + +PPLRER+SD Sbjct: 259 SGSFQRVGGVKTLKTNSRIICATNLDLWHMVQEKLFREDLFYRINVVSIHMPPLRERKSD 318 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A YF + C +I + + E L Y WPGN+REL NV+E++V + Sbjct: 319 IPLLARYFLKKYCGQIGKDI-SHIPDSTMEMLHRYDWPGNVRELANVIEQAVVFCKRKEL 377 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 L ++ + + P+ I + SLP L+Q L + +N K+A Sbjct: 378 ALHNLPLKVRETSLPKAFILNLASRSLP-----------DAASALIQNVLAETGWNMKQA 426 Query: 306 AELLGLTYHQFRALLKKHQI 325 AE L + + +KK+ I Sbjct: 427 AEKLDIARGTLYSKIKKYGI 446 >UniRef50_B8FMY7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMY7_DESAA Length = 525 Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 107/232 (46%), Positives = 159/232 (68%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G +V++ ++ +AP + PVLI GE G GKELIA+ +H +S R GP I +NC Sbjct: 197 NEIIGRNQGLRDVVKMINLIAPQNTPVLINGETGVGKELIANAIHSMSPRKDGPLIIVNC 256 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ + L++SELFGHEAGAFTGA +R GRFERA GT+FLDE+ +Q KLLRV++ Sbjct: 257 GAIPQTLVESELFGHEAGAFTGAAERRKGRFERAHHGTIFLDEIGELKPDIQVKLLRVLQ 316 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ERVGGS+ ++VN R++ AT+ +L MV+EG FR DL R+ + +PPLR R +D Sbjct: 317 SQEIERVGGSKSIKVNARIIAATHRNLARMVSEGAFREDLYYRINVFPIVVPPLRTRTND 376 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 I + ++F + R++K+ P +A L+NY WPGN+REL+N++ER++ Sbjct: 377 IPALTDHFIRKKSRDLKIYPAPKLDNKAIYHLMNYHWPGNVRELENIIERAL 428 >UniRef50_B9M6T3 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=B9M6T3_GEOSF Length = 488 Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 126/307 (41%), Positives = 177/307 (57%), Gaps = 15/307 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D +G + L+V + +AP D VLI+GE GTGKEL A +H S R PF+++NC Sbjct: 183 DQFVGTGKAMLDVFANIRKVAPTDLTVLILGESGTGKELTAQAIHERSPRKDKPFVAINC 242 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ +NLL++ELFGHE GAFTGA G+FE AD GT+FLDE+ P +Q KLLR ++ Sbjct: 243 AAIPDNLLEAELFGHEKGAFTGAHTTKKGKFEYADNGTIFLDEIGDMPSNLQAKLLRFLQ 302 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 +ERVG +VNVR++ ATN DL + EG FR+DL RL + LPP+RER D Sbjct: 303 DKIVERVGTVGGKKVNVRVIAATNRDLSVAIAEGKFRSDLYYRLDEFAINLPPVRERGED 362 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 +++A+YF + RE L FT+ A + + NY WPGN+RE+ N V RS+ Sbjct: 363 TLILAKYFLNKFSREGGLA--KTFTKEAIDVINNYDWPGNVREIINKVRRSIVMATGRYV 420 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D+++D K ED S+ +S + EKE ++ + YN A Sbjct: 421 TPADLMLDVAK---VEDGAGNSDLSSAVAV----------LEKEKIKEVFKSCNYNISTA 467 Query: 306 AELLGLT 312 A+LLG++ Sbjct: 468 AKLLGVS 474 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 131/325 (40%), Positives = 183/325 (56%), Gaps = 29/325 (8%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G + + +AP D VLI GE GTGKEL+A +H SSR PF+ +NC Sbjct: 424 EGMIGRDYRMQTIYRLIQDVAPTDVTVLIQGESGTGKELVAKAIHARSSRRDNPFVVINC 483 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +A LL+SELFGHE GAFTGA ++ PGRFE+A GGT+FLDE+A + Q KLLRV++ Sbjct: 484 SAYPATLLESELFGHEKGAFTGAIRQRPGRFEQARGGTVFLDEIAEVDLSAQVKLLRVLQ 543 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + ER+GG + ++V+VR++ ATN DL V G FR DL RL + LPPLRER +D Sbjct: 544 TQKFERLGGEKSIEVDVRILAATNKDLLEEVKAGRFREDLYYRLDVVPINLPPLRERGND 603 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 L+A +F ++ ++ + A LL+Y WPGN+REL+NV+E++V Sbjct: 604 TALLARHF-LERFAAVQDKRINEISSSAMRALLDYSWPGNVRELENVMEQAVVLCKGETI 662 Query: 246 PLDDI-----IIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 L+D+ P +R+ ED QEK LL +L+ + Sbjct: 663 ALEDLPDKLQGARPARRKTIED-----------------------QEKNLLLETLEACGW 699 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N+K AAE LG+ A LKKH I Sbjct: 700 NKKMAAERLGIGRSTLYAKLKKHGI 724 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 129/318 (40%), Positives = 186/318 (58%), Gaps = 8/318 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++ + + + +A VL+ GE GTGKEL+A +H LS R P I++NC Sbjct: 143 DAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKELLARLIHQLSPRSTRPIITVNC 202 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AL E+L++SELFGHE GAFTGA R GRFE ADGGTLFLDE+ M VQ KLLR ++ Sbjct: 203 GALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGTLFLDEIGELTMPVQVKLLRFLQ 262 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E +RVGG+ ++ +VR++ ATN DL MV E FR DL RL V+ +PPLRER D Sbjct: 263 EREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFREDLYYRLNVVVMSIPPLRERRED 322 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + ++F + E + G + AR+ L+ Y +PGN+REL+N++ER+V Sbjct: 323 IPALIDHFLERFAAENGKKI-SGISSEARDLLMKYDYPGNVRELENIIERAVVIARNEII 381 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 ++D+ PF+ ED + + LR EK+++Q ++++ +Q RA Sbjct: 382 YMEDL---PFR----EDTLVATSGGVPEEGEGRLRGAIENLEKQMIQDAMEKAGDHQTRA 434 Query: 306 AELLGLTYHQFRALLKKH 323 AE+LGL+ R LKK+ Sbjct: 435 AEMLGLSERMLRYKLKKY 452 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 135/309 (43%), Positives = 183/309 (59%), Gaps = 18/309 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +L+ ++ +V+E V +AP V I GE GTGKE+++ +H LS R PFI++NCA Sbjct: 142 DLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSRAVHNLSLRRDKPFIAINCA 201 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ++ L++SELFGHE GAFTGA +R PG FE A GGTLFLDEL P+ +Q KLLRV+E Sbjct: 202 SIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLFLDELGEIPIELQAKLLRVLEE 261 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 G+L R+GG ++V+VR++CATN DL + G FR DL RL + LPPLRER D+ Sbjct: 262 GKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDLYFRLNVFQIHLPPLRERRDDV 321 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 ++ ++F + R G A E L NY WPGNIREL+N VER+V Sbjct: 322 PILVQHF-VDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNIRELRNAVERAVI-------- 372 Query: 247 LDDIIIDPFKRRPPEDAIAVSE--TTSLP-TLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 L D + + PP+ A E T LP L LD E+E + SLQ+ N+ Sbjct: 373 LCDGELITREHLPPDMAGKSPERHTFRLPFGLSLD------AVEREYILGSLQRNGNNKA 426 Query: 304 RAAELLGLT 312 R AE+LG++ Sbjct: 427 RTAEVLGVS 435 >UniRef50_UPI0001927093 PREDICTED: hypothetical protein n=1 Tax=Hydra magnipapillata RepID=UPI0001927093 Length = 450 Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 114/216 (52%), Positives = 148/216 (68%), Gaps = 1/216 (0%) Query: 22 VSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE 81 V +AP VL GE G GKE+ A LH S R PF+++NCAA+ E L++SELFG E Sbjct: 2 VRRVAPTPATVLFTGESGVGKEMFARSLHRNSDRAARPFVAINCAAIPETLIESELFGVE 61 Query: 82 AGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVN 141 GAFTGA PGRFERADGGTLFLDE+ T ++ Q KLLR ++ GE+ERVGG++ ++VN Sbjct: 62 RGAFTGAGASRPGRFERADGGTLFLDEIGTLSLVAQGKLLRALQEGEIERVGGTKTVKVN 121 Query: 142 VRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREI 201 VR+V ATN L V +G+FR DL RL + LPPLRER DI L+ ++F + RE Sbjct: 122 VRVVAATNEHLREAVRKGSFREDLFYRLNVFPIHLPPLRERRDDIPLLMQHF-LNHYRER 180 Query: 202 KLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 PGF++RA + L NY +PGNIREL+N++ER+V Sbjct: 181 YQREVPGFSQRAVKALFNYGFPGNIRELQNLIERAV 216 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 132/333 (39%), Positives = 197/333 (59%), Gaps = 19/333 (5%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ V++ V H+AP VL+ GE GTGKE+IA +HYLS R +GPFI +NC+A Sbjct: 196 VIGQSKQMQAVMDLVYHVAPSRSTVLLRGESGTGKEVIARTIHYLSPRKEGPFIKVNCSA 255 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E +L+SELFGHE GAFTGA GRFE A GGTLFLDE+ VQ KLLRV++ Sbjct: 256 LPETILESELFGHEKGAFTGALFERKGRFELAHGGTLFLDEIGDISPAVQVKLLRVLQER 315 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG++ ++V+VR++ ATN +L V +G FRADL R+ + LPPLRER+ DI Sbjct: 316 EFERVGGNKTIRVDVRVITATNKNLEEAVLKGEFRADLYFRINVVSISLPPLRERKEDIP 375 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A++ ++ +E+ L T A + L+N WPGN+REL+N +ER+ + + + Sbjct: 376 LLADHILNKIGKELNRKL--RITPEALKLLINCHWPGNVRELENCLERAAT--NSRNNWI 431 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQE---------------KELLQ 292 D+I + + + + E + T + E + ++E KE + Sbjct: 432 DEIDVACRRNQCSSPMLWKKELQVISTPVVSSEEAKSREETPRSSFFSPLISDDPKEKII 491 Query: 293 LSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 ++++ + Q +AA LL +T Q LKK+ I Sbjct: 492 QAMEKCGWVQAKAARLLNITPRQLGYALKKYGI 524 >UniRef50_C4XJ05 Fis family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XJ05_DESMR Length = 447 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 138/328 (42%), Positives = 184/328 (56%), Gaps = 33/328 (10%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++GE+ + V Q+ +A D VL++GE G GKEL A LH S R +GPF+++NCA Sbjct: 134 NMVGESRAMRAVFSQLLKVAATDATVLLLGESGVGKELAALSLHEKSGRAKGPFVAVNCA 193 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E LL+SELFGHE GAFTGA R G+FE+A GTLFLDE+ P Q K+LR IE Sbjct: 194 AIPEGLLESELFGHERGAFTGAVARKIGKFEKAAQGTLFLDEIGDMPPETQAKILRAIES 253 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 + ERVGG +PL+++VR+V AT+ DLP M+ +G FR DL RL V+LPPLR+R DI Sbjct: 254 RQFERVGGGKPLRLDVRVVAATHRDLPEMIRQGRFREDLYHRLNVFPVRLPPLRDRREDI 313 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERAR------ETLLNYRWPGNIRELKNVVERSVYRH 240 L+A F GF AR + LL + WPGN+RELKNV+ER+ Sbjct: 314 PLLAGRF------------LEGFRPGARLSVEALQRLLAHDWPGNVRELKNVLERATVLA 361 Query: 241 GTSDYPLDDII---IDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQ 297 G D+I + + P +A A E DL E+ L++ +L + Sbjct: 362 GG-----DEIAPRHLPGLSGQGPAEATAGDEAA-------DLDSRLAAYERTLIEAALSR 409 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 Q RAA LLG+ +KK I Sbjct: 410 TGGVQSRAAALLGIKERSLWHRVKKLGI 437 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 135/325 (41%), Positives = 191/325 (58%), Gaps = 14/325 (4%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++++ EV + + +A VLI GE GTGKELIA+ LH SSR PFI +NCAA Sbjct: 137 IIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGASSRRDKPFIKINCAA 196 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + LL+SELFG+E GAFTGA PGRFE AD GTLFLDE+ P+ +Q KLLR I+ G Sbjct: 197 IPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEIPVEMQVKLLRAIQEG 256 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG + +V+VRLV ATN DL A + G FR DL RLA + LP LRER SD+ Sbjct: 257 EFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVVPISLPALRERRSDVP 316 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 ++A +F + R + + G + A L Y WPGNIREL+N++ER + +D PL Sbjct: 317 MLARHFVEKYNRRLNKKI-EGIADDAMALLQGYAWPGNIRELENLIERVLL---FADGPL 372 Query: 248 DDI--IIDPFKRRPPEDAIA----VSETTSLPTLPLDLREF----QMQQEKELLQLSLQQ 297 + +P ++ A A + +PT + L++ + E++L+ L++ Sbjct: 373 ITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAELERDLIVKKLEE 432 Query: 298 GKYNQKRAAELLGLTYHQFRALLKK 322 N RAA LL ++ + +K+ Sbjct: 433 TGGNVTRAARLLQISRKSLQTKMKE 457 >UniRef50_A8V246 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V246_9AQUI Length = 454 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 130/326 (39%), Positives = 190/326 (58%), Gaps = 2/326 (0%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + +Y +++G + + + +AP D PVLIIGE GTGKEL A L LS R PF Sbjct: 127 LCQYLCSIIGSSPYMKNICKLAGEVAPTDLPVLIIGETGTGKELFARGLWKLSKRKDKPF 186 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I++NCAA+ ENL++SELFG+E GAFTGA+ + G+FE A+GGT+FLDE+ P+ Q KL Sbjct: 187 IAINCAAIPENLIESELFGYEKGAFTGAETQKKGKFEIANGGTIFLDEIGEMPLEAQSKL 246 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ G RVGG + + V+VR++ ATN DL MV EG FR DL RL +LPPLR Sbjct: 247 LRVLQEGSFYRVGGEEEINVDVRVIAATNKDLSQMVKEGKFREDLYYRLNVITFKLPPLR 306 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DI + E I + GFT+ E L + W GNIREL+NVV RS+ Sbjct: 307 ERKEDIPYIVE-CIINKNNKKINKNIEGFTKDYIEKLKSRYWKGNIRELENVVIRSMVFC 365 Query: 241 GTSDYPLDDI-IIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGK 299 S + D+ ++ K P+ + + + ++ + + EK L++ L++ Sbjct: 366 RDSILSITDLEFLEEGKEEIPDLYDKLKDIIEQLINHENAKQTKEKIEKILIENVLKKSN 425 Query: 300 YNQKRAAELLGLTYHQFRALLKKHQI 325 +N ++A++LG+ R L+K I Sbjct: 426 FNLSKSAQILGINRATLRKKLEKLNI 451 >UniRef50_Q48J06 Sigma-54 dependent transcriptional regulator n=5 Tax=Gammaproteobacteria RepID=Q48J06_PSE14 Length = 597 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 141/337 (41%), Positives = 194/337 (57%), Gaps = 25/337 (7%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G + +F + + +A VLI GE G GKE+ A +LH LS +GPF++LNCAA Sbjct: 262 LIGASAAFNAATQALQRVAMTPATVLISGESGVGKEMFARQLHQLSRNREGPFVALNCAA 321 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + +NL+++ELFG E GA+TGA PGRFERA+GGTLFLDE+ + + Q KLLR ++ Sbjct: 322 IPDNLIEAELFGVERGAYTGATHSRPGRFERANGGTLFLDEITSLSLAGQSKLLRALQER 381 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E+ERVGG ++VNVR+V ATN DL V +G FR DL RL + LPPLRER DI Sbjct: 382 EIERVGGGHGIKVNVRVVAATNVDLRKAVADGEFRDDLFYRLNVYPITLPPLRERRDDIP 441 Query: 188 LMAEYFAIQMCREI-KLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ F + C+E + P G T RA +TLL Y + GN+REL+N++ER + SD Sbjct: 442 LLINAFLKRFCQEYGRTP--AGLTMRALKTLLRYDFAGNVRELQNLIERGLI---ASDEG 496 Query: 247 LDDIIIDPFKRRP-PEDA-----------IAVSETTS------LPTLPLDLREFQMQQ-E 287 ++ F+ PED+ +VSET L TL + F + E Sbjct: 497 QAIDLVHIFRNESLPEDSYSLNPEGTLRQTSVSETRQSSTARLLDTLGQSGQAFSIDDLE 556 Query: 288 KELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 + L+ +L + N A+ LLGL+ QF LKK Q Sbjct: 557 QRLIHEALDGSEGNLAAASRLLGLSRAQFAYRLKKQQ 593 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 131/330 (39%), Positives = 190/330 (57%), Gaps = 24/330 (7%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D +G+++ ++V ++ +AP D VLI GE GTGKEL+A +H S R PF++++C Sbjct: 143 DRFVGKSHEMVKVYRRIMQVAPTDSTVLITGESGTGKELVARAIHKHSQRRDHPFVAVDC 202 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +L ENLL+SELFGH G+FTGA G F+ A+GGTLFLDE++ + Q KLLRV++ Sbjct: 203 TSLVENLLESELFGHVKGSFTGAMHTKTGLFKVAEGGTLFLDEVSNLSLTTQAKLLRVLQ 262 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ +GG+QP +N+RLV ATN L MV EGTFR DL RL + LPPLRER D Sbjct: 263 EREVTPIGGTQPTPINIRLVAATNRSLREMVAEGTFREDLFFRLNIIPMDLPPLRERTGD 322 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ + + E+ + G T A + L +Y +PGN+REL+N++ER+V S Sbjct: 323 IPLLVGHTVRTVAEEVGKDI-KGVTAGAMQVLQSYSFPGNVRELENIIERAVVLAEDSLI 381 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSL--PTLPLDLREFQMQQ-----------EKELLQ 292 DD+ ++ A S T L +PL + E + + EK + Sbjct: 382 TPDDLELNH----------AASPTVLLDYTAVPLSVEELKETKRHLREQAVEDIEKAFVV 431 Query: 293 LSLQQGKYNQKRAAELLGLTYHQFRALLKK 322 +LQ+ + N RAAE G+ F+A++KK Sbjct: 432 NALQRNRGNITRAAEETGMLRPNFQAMMKK 461 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 224 bits (570), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 125/326 (38%), Positives = 187/326 (57%), Gaps = 14/326 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+ +G++ +V + + + D VLI GE GTGKE++A +H S R PFI +NC Sbjct: 141 DSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVVARTIHSNSRRSSRPFIKINC 200 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A + E L++SELFGHE G+FTGA + G+FE A G +FLDE+ P+ Q KLLRV++ Sbjct: 201 ATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVFLDEIGELPLHTQAKLLRVLQ 260 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVGG++ ++V+VR++ ATN +L MV EG FR DL RL V+LPPLRER+ D Sbjct: 261 EKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYYRLNVVNVKLPPLRERKED 320 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ YF + R+ + G ++ A Y WPGN+RE+KNV E++V S Sbjct: 321 ISLLINYFVKKFARKYNKNI-SGISQEAMIFAEKYAWPGNVREIKNVCEQAVVMARNSVL 379 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLD------LREFQMQQEKELLQLSLQQGK 299 LDD+ P + E + + LD L++ + EK+++ SL + Sbjct: 380 MLDDM---PL----IGNGNGFLEFKNNAKISLDTNDKRSLKDIVAEVEKQVILKSLNENN 432 Query: 300 YNQKRAAELLGLTYHQFRALLKKHQI 325 +N++ A+ LGL A +K++ + Sbjct: 433 WNRQNTAKALGLNRRSLYAKMKEYDL 458 >UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=2 Tax=Planctomyces RepID=C1ZJW6_PLALI Length = 662 Score = 224 bits (570), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 132/321 (41%), Positives = 189/321 (58%), Gaps = 22/321 (6%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++GE+ + + + + LA D PVLI+GE GTGKE++AS LHY SR PFI++NCA Sbjct: 344 NIVGESPAIVAMRSTIRRLAGTDLPVLILGESGTGKEVVASSLHYQGSRADRPFIAVNCA 403 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E LL+SELFGHE G+FT A + G+FE A+GGT+FLDE+ Q KLLRV+E Sbjct: 404 ALTETLLESELFGHERGSFTDAHEMRRGKFELAEGGTIFLDEIGDLSAGGQAKLLRVLEQ 463 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 + RVGGSQ + +N R++ ATNA L V FR DL RL +++PPLRER D+ Sbjct: 464 KVITRVGGSQTIPINARVIAATNARLAEAVRAKKFREDLYFRLNVVTLEIPPLRERADDV 523 Query: 187 MLMAEY----FAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + +AEY FA+Q R K+ L + AR L ++ WPGN+REL+N++ER + Sbjct: 524 LPLAEYFLEQFAVQ-ARRGKMHL----SAEARRRLQSHAWPGNVRELRNLMERVAFLAPA 578 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 ++D+ F P D+ P+L + L E ++E ++ ++++ + N Sbjct: 579 ERIEVEDL---AFILSPERDSF------HEPSLDMGLSEATNSFQQEYIRRAIKRVRNNM 629 Query: 303 KRAAELLGL----TYHQFRAL 319 AA LLGL Y + R L Sbjct: 630 SEAARLLGLHRSNLYRKMRQL 650 >UniRef50_Q3A103 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A103_PELCD Length = 467 Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 133/314 (42%), Positives = 188/314 (59%), Gaps = 22/314 (7%) Query: 17 EVLEQVSHLAPLDKP-VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS 75 +VLE V +A D V I GE GTGKEL+A +HY S+R PF+++NCAA+ + LL+S Sbjct: 164 QVLEMVDKIASSDAATVFIQGESGTGKELVARAIHYQSARASQPFMAINCAAVPQTLLES 223 Query: 76 ELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGS 135 EL GHE GAFT A+ G FE ADGGT+FLDE+ +Q KLLRV+E RVGG+ Sbjct: 224 ELMGHEKGAFTDAKNVKKGLFELADGGTVFLDEIGDMDPAMQAKLLRVLEERTFRRVGGT 283 Query: 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAI 195 + ++V+VR+V ATN DL + + +FR DL R+ VQ+PPLRER DI+ +AE+F Sbjct: 284 RDIKVDVRIVSATNRDLHKAMEDKSFRPDLYYRIGVIPVQIPPLRERRDDILPLAEFFIR 343 Query: 196 QMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPF 255 Q RE + G + A++ LL Y WPGNIREL+NV+ERSV ++++ Sbjct: 344 QFNREFNKKV-RGISRMAQKILLEYSWPGNIRELRNVIERSVILECEEQLLVENL----- 397 Query: 256 KRRPPEDAIAVSETTS-------LPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAEL 308 P + +A S + LP +D+ + E+EL++ +L+ + NQ +AA+L Sbjct: 398 ----PRELVAQSVGDNIGPLNFQLPPEGVDIEDI----ERELIRQALEMAQGNQTQAAKL 449 Query: 309 LGLTYHQFRALLKK 322 L L FR +KK Sbjct: 450 LRLGIDAFRYRMKK 463 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 135/317 (42%), Positives = 185/317 (58%), Gaps = 11/317 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++GE+ + + + A VLI+GE GTGKELIA LH S R PFI ++CA Sbjct: 144 DIIGESPQLQGIYDVIRRAAGTRATVLILGESGTGKELIAQALHQESPRKDKPFIRVHCA 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL+ENLL+SELFGHE G+FTGA R GRFE ADGGTLFLDE+ VQ KLLRV++ Sbjct: 204 ALSENLLESELFGHEKGSFTGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQ 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG+Q L+V+VR+V AT+ DL A V G FR DL RL V LPPLR+R+SD+ Sbjct: 264 REFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDV 323 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +F ++ + G + LL++ WPGNIREL+N +ER+V + Sbjct: 324 PALVNHF-LEKYSDSYGKQVRGLAPGTLQALLSHDWPGNIRELENAIERAVVLAQGQELS 382 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 DD + P R P + TL +++E L L + QG + RAA Sbjct: 383 TDD--LPPVLRGPRPHGTSTGALIPGATLA------AIEREAILRTLEMVQG--STSRAA 432 Query: 307 ELLGLTYHQFRALLKKH 323 E+LG++ + + LK++ Sbjct: 433 EVLGISVRKIQYRLKEY 449 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 133/325 (40%), Positives = 187/325 (57%), Gaps = 17/325 (5%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ + E+ ++ +AP + VL+ GE GTGKEL+A LH S R GP +++NCAA Sbjct: 143 IIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVAKALHAGSPRAGGPMVAVNCAA 202 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 LNE LL+SELFGHE GAFTGA++R GRF AD G++FLDE+ +Q KLLRVI+ Sbjct: 203 LNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFLDEIGEIAPSIQAKLLRVIQER 262 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++RVGG +P+ V+VR++ ATN DL V G FR DL RL + +PPLRER DI Sbjct: 263 EIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLYYRLNVVAISVPPLRERGQDIP 322 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY-- 245 L+A++F + E GFT A + LL WPGN+REL+N VER+V +Y Sbjct: 323 LLAQHFLTRFA-EKNRKRIKGFTPAAMDHLLRCPWPGNVRELENAVERAVILS-VGEYVT 380 Query: 246 ----PLD---DIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQG 298 PL + + A A + L + LD E+E++ +L+ Sbjct: 381 ERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMALD------DVEREVILATLRDT 434 Query: 299 KYNQKRAAELLGLTYHQFRALLKKH 323 N+ AA +LG+T LKK+ Sbjct: 435 GGNKSEAARVLGITRATLHKKLKKY 459 >UniRef50_C6PZ60 Putative sigma54 specific transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ60_9CLOT Length = 531 Score = 223 bits (569), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 111/233 (47%), Positives = 159/233 (68%), Gaps = 2/233 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D++ G + + + A + +LI+GE GTGKE+ A +H +S R PFI++NC Sbjct: 272 DSIKGNSKLINQTKNLATQAAKYESNILILGESGTGKEVFARAIHKMSKRKDEPFIAINC 331 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ ENLL+SELFG+E+GAFTGA K PG+FE A+GGT+FLDE+ + +Q KLLRVI Sbjct: 332 AAIPENLLESELFGYESGAFTGANKGGKPGKFELANGGTIFLDEVGDLSLHLQPKLLRVI 391 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 E G+LERVGG + ++++VR++ ATN DL MV +G FR D RL + +PPLR+R Sbjct: 392 EQGQLERVGGVKSIKLDVRIISATNKDLETMVKKGEFREDFFYRLCVIPIMIPPLRKRLE 451 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 DI+L+AE+F + +++ + G +E ++ LL Y WPGN+REL+NVVE SV Sbjct: 452 DIILLAEHFLDKYNKKLNKNIV-GISEEVKKQLLLYDWPGNVRELENVVEYSV 503 >UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H973_ANADF Length = 602 Score = 223 bits (569), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 117/244 (47%), Positives = 155/244 (63%), Gaps = 1/244 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G + VL QV+ +AP D VLI+GE GTGKELIA +H SSR FI +NC Sbjct: 285 EEIVGSSEGLRRVLAQVAKVAPTDSTVLILGETGTGKELIARAIHRQSSRSTQAFIRVNC 344 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ +L+ SELFGHE GAFTGA +R GRFE A+GGT+FLDE+ Q LLRV++ Sbjct: 345 AAIPSSLITSELFGHEKGAFTGAVQRRTGRFESANGGTIFLDEVGDLTAETQIALLRVLQ 404 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ER+G S+P+ V+VR++ AT+ DL A V GTFR DL RL +Q+PPLRER D Sbjct: 405 EREFERIGSSRPISVDVRVLAATHRDLEAAVEAGTFRQDLFYRLNVFPLQIPPLRERRDD 464 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+AEY + R + +R E+ Y WPGN+REL+NVVER+V + Sbjct: 465 IPLLAEYLIARYARTAGKSI-RNIGKRTLESFRAYDWPGNVRELQNVVERAVILCDGETF 523 Query: 246 PLDD 249 +D+ Sbjct: 524 AVDE 527 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 223 bits (569), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 131/322 (40%), Positives = 185/322 (57%), Gaps = 5/322 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++G + V ++ AP + VLI GE GTGKE+IA +HY S R PF++++C Sbjct: 141 ENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEMIARAIHYNSLRKDQPFVTVDC 200 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 L+ENLL+SELFGH G+FTGA G F+ A+ GTLFLDE P+ Q KLLRVI+ Sbjct: 201 NTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNGTLFLDEFGNIPLSTQAKLLRVIQ 260 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E VG + + NVRL+ ATN DL AMV EGTFR DL R+ + P LRER D Sbjct: 261 EREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFREDLYYRINVFPIHSPALRERRDD 320 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I +A +F C E+ P+ +E A L+NY WPGN+REL+N ++R+V +SD Sbjct: 321 IPALAFHFLKIFCSELGKPV-SEISEGAMSLLMNYGWPGNVRELENTMQRAVIL--SSDG 377 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTS-LPTLPLDLREFQMQQ-EKELLQLSLQQGKYNQK 303 + + P + V T+ L + RE +++ EK +Q +L++ N Sbjct: 378 IIRQAHLASIIDNSPRLDLDVPRTSDELKRIKKIAREKSVEEVEKLFVQETLKRNASNVT 437 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 R+AE G+ F+AL+KK+ I Sbjct: 438 RSAEETGMQRTNFQALMKKYNI 459 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 223 bits (569), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 130/319 (40%), Positives = 188/319 (58%), Gaps = 11/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + EVL + +A + VLI GE GTGKEL+A +H S R +GP + +NCA Sbjct: 190 NIIGRSKVIQEVLRAIDQVADTNTTVLISGETGTGKELVARAIHDNSRRAKGPLVQVNCA 249 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ + LL+SELFGHE GAFTGA R GRFE A GGT+FLDE+ + Q KLLRV++ Sbjct: 250 AMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIFLDEVGELSPIAQAKLLRVLQE 309 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E + +G S+ ++V+VR++ A+N DL V GTFR+DL RL + LPPLRER DI Sbjct: 310 REFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDLYYRLNVFPIFLPPLRERGPDI 369 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +L+A+YF ++ RE+ + T A + L+ Y WPGN+REL+N +ER+V G + Sbjct: 370 LLLADYFVLKYARELDKDV-KRITTSAIDMLMCYHWPGNVRELENCIERAVLLAGGN--A 426 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 +D + P + P VS L E++L+ +L+ + NQ +AA Sbjct: 427 VDSWHLPPTLQMKPVGMQNVSRGK--------LEALVSAFERDLITDALKDVRGNQSQAA 478 Query: 307 ELLGLTYHQFRALLKKHQI 325 LLG T + ++K+ I Sbjct: 479 RLLGTTKRIVQYKVEKYGI 497 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 223 bits (568), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 123/276 (44%), Positives = 168/276 (60%), Gaps = 6/276 (2%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 E ++G FL +LE+ +A VL++GE GTGKE+ A +H++S R GPF++ Sbjct: 147 EGSRTVIGRDRHFLRLLERARTVASSKATVLVLGESGTGKEVFARFIHHVSDRKAGPFVA 206 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 LNCAAL E LL+SELFGHE GAFTGA G+FE A GGTL LDE+ P+ +Q KLLR Sbjct: 207 LNCAALPEGLLESELFGHEKGAFTGAVMAKKGKFELAHGGTLLLDEIGEVPLHLQAKLLR 266 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E++R+GG +P++V+V +V TN DL V +GTFR DL RL ++LP LRER Sbjct: 267 VLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEAVKDGTFRQDLYYRLNVIPIRLPSLRER 326 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+A++F + R PL + AR+ L+Y WPGN+RE++N++ER V Sbjct: 327 PDDIFLLADFFIEKHSRRYNKPL-KKLSAAARQRFLDYDWPGNVREMENLLERGVLLSNG 385 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLD 278 + L D D PPE A S P+ P D Sbjct: 386 DELELWDFWDDEL---PPEP--AASAELPEPSGPAD 416 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 223 bits (568), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 135/320 (42%), Positives = 184/320 (57%), Gaps = 13/320 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++ + +VL QVS +A D V + GE GTGKELIA LH S+R +GPF+++NC Sbjct: 142 DNIIASSEKMQQVLLQVSQIAATDSTVCLYGESGTGKELIAKVLHLTSTRSRGPFVAINC 201 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ E LL+SELFGH GAFTGA + G ++A+ GTLF+DE+A +Q KLLRV + Sbjct: 202 GAIPEGLLESELFGHTKGAFTGADQAKKGLLQQAERGTLFMDEIAELTPALQVKLLRVFQ 261 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E VGG QP++V+ RLV ATN DL + +G FR DL R+ V LPPLRER D Sbjct: 262 DHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGKFREDLYYRIHVIPVYLPPLRERPED 321 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A +F +Q PGF+ A L+ +RWPGN+REL NVVER+V + Sbjct: 322 IPLLAHHF-LQHFNGTMNKNIPGFSPDAMHRLMLHRWPGNVRELANVVERAVVLAREGNI 380 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + ++++ +A++ S T LP L EF E+ L L K N RA Sbjct: 381 CAEHLLLE-------REAVSDS-GTELPPLTAARDEF----ERAYLIQVLHSTKGNVSRA 428 Query: 306 AELLGLTYHQFRALLKKHQI 325 A G +F LL+K+ + Sbjct: 429 AAKAGRYRAEFYKLLRKYDL 448 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 223 bits (568), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 134/329 (40%), Positives = 187/329 (56%), Gaps = 14/329 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G EV + + +A D VLI GE GTGKEL+A L++ S R PF+ +NCA Sbjct: 148 KIIGNHTRMQEVYKLIGQVANKDVTVLITGESGTGKELVARALYHHSDRKNKPFLGVNCA 207 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E L +SELFG+E GAFTGA++ H G+FER GGTLF DE+A P+ Q KLLR ++Y Sbjct: 208 AIPETLFESELFGYERGAFTGAERTHIGKFERCHGGTLFFDEIAEMPLSTQAKLLRALQY 267 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE+ERVG QPL+V+VR++ ATN +L V +G FR DL RL + LPPLRER DI Sbjct: 268 GEIERVGAEQPLKVDVRVLVATNKNLERAVEQGRFREDLYWRLKIISIHLPPLRERPEDI 327 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +YF ++ E K P+ + A L ++ WPGN+REL+N V R+V Sbjct: 328 PALVDYFLVRFGEEYKSPI-RRIEDGALAKLKSHAWPGNVRELENTVRRAVVLSSGDVIR 386 Query: 247 LDDIIIDPFKRRP--PE---DAIAVSETTSLPTLP--LDLREFQMQQ------EKELLQL 293 + + D P PE + A E +P L + M + E+ LL Sbjct: 387 EEHLRFDSGGHEPSSPEWDKNPWARVERKLEELIPDLLQVGGEAMHESIIDMVERILLSK 446 Query: 294 SLQQGKYNQKRAAELLGLTYHQFRALLKK 322 L+Q NQ +AA +LG++ + R +KK Sbjct: 447 VLEQCGNNQVKAARVLGVSRNTLRHRMKK 475 >UniRef50_A7JYI2 Transcriptional regulator n=10 Tax=Vibrionaceae RepID=A7JYI2_VIBSE Length = 543 Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 128/333 (38%), Positives = 191/333 (57%), Gaps = 21/333 (6%) Query: 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 + E+ L VL ++ + L VL+ GE G GKE+IA +H S+R + P I NCAA+ Sbjct: 212 IAESEEMLNVLNRLDKVLSLPVDVLLRGETGAGKEVIAKYIHENSNRSEQPLIVQNCAAI 271 Query: 69 NENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 E LL+SELFGH+ G+FTGA K G FE A+GGTLFLDE+ PM++Q KLLRV++ + Sbjct: 272 PEQLLESELFGHKKGSFTGADKDKVGLFEAANGGTLFLDEIGDMPMLLQAKLLRVLQERK 331 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 + +G S+ ++V+VR++ AT+ +L + +G FRADL RL + LPPLR R+SDI+ Sbjct: 332 VRPIGTSKEIEVDVRVIAATHCNLMQQIRDGGFRADLFYRLNVFPITLPPLRARKSDIIP 391 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLD 248 +AE+F + LP PG + R+ LL Y++PGN+RELKN++ERSV SD+ + Sbjct: 392 LAEHFVQHTTNTLGLPQAPGLSANVRKQLLAYQYPGNVRELKNIIERSVL---LSDF--E 446 Query: 249 DIIIDPFKRRPPEDAIAVSETTSLPT----------------LPLDLREFQMQQEKELLQ 292 I F + PE ++ + PT + L++ Q E+ ++ Sbjct: 447 TITHIEFGEQIPESVPSIDMKAASPTPEQPAYEQQAQADLEDVSKSLKDVVSQYERTVII 506 Query: 293 LSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 L ++ K+AAE L L +KK+ I Sbjct: 507 DCLNACNWHTKKAAEQLALPMSTLNHKMKKYDI 539 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 133/340 (39%), Positives = 197/340 (57%), Gaps = 27/340 (7%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G + + + + + + +AP D VLI GE GTGKE++A + S R FI +NCAA Sbjct: 142 LVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVAREFYRRSPRRSQAFIKVNCAA 201 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 ++ENL++SE FGHE GAFTGA +R GRFE A GTL LDE++ P +Q KLLRV++ Sbjct: 202 ISENLIESEFFGHERGAFTGATERREGRFELAHQGTLLLDEVSEIPANLQAKLLRVLQER 261 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGGS+ ++VNVR++ +N DL V +G FR DL RL V +P LRER DI Sbjct: 262 EFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLYYRLNVFPVHVPALRERPEDIA 321 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT----- 242 L+A++F + R+ + + GF + AR L+ YRWPGN+REL+N VER+V T Sbjct: 322 LLADHFLRRFARKHGVKV-TGFADSARAALIGYRWPGNVRELQNTVERAVILSETGRAVT 380 Query: 243 -------SDYPLDDIIIDPFKRRP----PEDAIAVSETTSLPTLP------LDLREFQMQ 285 D+ ++ ++P P A+A + PT+ L L E Sbjct: 381 AAALGLPGDFLPGELPLEPAPAPEVPALPVAAVAEEPAGASPTVTDSHGQVLKLDEL--- 437 Query: 286 QEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 EK+ ++ +L+Q N+ +AA LG++ R L+++++ Sbjct: 438 -EKQAIRAALRQTGGNRTQAAAELGISIRTLRNKLQEYRL 476 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 134/322 (41%), Positives = 186/322 (57%), Gaps = 42/322 (13%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + + +V + +A + VL+ GE GTGKE+ A +H LSSR PF+ +NCAA Sbjct: 143 IVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSIHQLSSRRDKPFVPINCAA 202 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E+LL+SELFGHE GAFTGA R GRFE A+ GTLFLDE+ P+ +Q KLLRV++ Sbjct: 203 LPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEITEMPLSMQVKLLRVLQEK 262 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG+ ++++VR++ ATN D + +GTFR DL RL + LPPLRER DI Sbjct: 263 EFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLNVLPIHLPPLRERTEDIP 322 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY-RHGTSDYP 246 L+A +F + + + P A L++Y WPGNIREL+NV+ERS+ G P Sbjct: 323 LLAMHFIKKFNPSQEQRMSP----EAMGLLISYEWPGNIRELQNVIERSIILAQGNEIKP 378 Query: 247 ---------LDDI-------IIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKEL 290 LD++ +I F P+D I+ E EKEL Sbjct: 379 HHLPKEIQKLDEVKNETTHGLIINF----PDDGISFDEV-----------------EKEL 417 Query: 291 LQLSLQQGKYNQKRAAELLGLT 312 + +L++ NQ RAA+LLG+T Sbjct: 418 ILKALEKSNGNQTRAAQLLGIT 439 >UniRef50_Q8L387 EugR n=4 Tax=Proteobacteria RepID=Q8L387_9PSED Length = 624 Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 117/231 (50%), Positives = 152/231 (65%), Gaps = 1/231 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G +++F + +AP VL GE G GKE+ A LH +S R PFI++NCA Sbjct: 273 DMVGVSSAFSVACHLLRRVAPTSASVLFTGESGVGKEMFARMLHRVSPRQNRPFIAVNCA 332 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E L++SELFG E GAFTGA + PGRFERADGGTLFLDE+ T ++ Q KLLR ++ Sbjct: 333 AIPETLMESELFGVERGAFTGATQSRPGRFERADGGTLFLDEIGTLSLVAQGKLLRALQE 392 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ERVGG+ L+V+VRLV ATN DL V+ G FR DL RL + LPPLRER D+ Sbjct: 393 SEVERVGGTHTLKVDVRLVAATNVDLRDAVSRGEFREDLFFRLNVFPIHLPPLRERREDV 452 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 L+ +F +Q + GFT RA +TLL Y +PGNIREL+N VER V Sbjct: 453 PLLMSHF-LQRFNVLHGKQIKGFTPRAVDTLLAYGFPGNIRELQNFVERGV 502 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 129/320 (40%), Positives = 190/320 (59%), Gaps = 10/320 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 L+G + VL+QV +A VL++GE GTGKEL+A +H S R + PF+S++CA Sbjct: 174 GLVGSSEPMRRVLDQVRKVASTGATVLVLGESGTGKELVARAIHDASPRREQPFVSISCA 233 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E LL+SELFGHE GAFTGA +R GRFE A+GGTLFLDE+ P VQ KLLRV++ Sbjct: 234 AIPEGLLESELFGHEKGAFTGAIRRKLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQE 293 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 + ERVGG + ++V+VR+V ATN +L MV G FR DL RL + LPPLR+R D+ Sbjct: 294 RQFERVGGEETVEVDVRVVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDV 353 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS-VYRHGTSDY 245 +A +F ++ + + G A E L +RWPGN+REL+NV+E++ V+ G Sbjct: 354 EELARFFVARLAPRMSRAVT-GLAPEALELLRRHRWPGNVRELENVIEQALVFAEGELVR 412 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 P D + + ++ PP ++ V P+ L + E++L+ + ++ + + Sbjct: 413 PRD--LPEGVRKAPPAPSLPV------PSGDRSLTDILEDLERQLILAAYEKARGVKAET 464 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LLG+ L+K+ I Sbjct: 465 ARLLGIKPSALYYKLEKYGI 484 >UniRef50_P17899 Transcriptional regulatory protein flbD n=24 Tax=Alphaproteobacteria RepID=FLBD_CAUCR Length = 455 Score = 223 bits (567), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 123/312 (39%), Positives = 188/312 (60%), Gaps = 6/312 (1%) Query: 17 EVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSE 76 +V++ +AP + +LI GE G+GKE++A +H S R + PFIS+NCAA+ ENLL+SE Sbjct: 129 QVIKLADQVAPSEASILITGESGSGKEVMARYVHGKSRRAKAPFISVNCAAIPENLLESE 188 Query: 77 LFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQ 136 LFGHE GAFTGA R G+FE ADGGTL LDE++ + +Q KLLR I+ E++RVGGS+ Sbjct: 189 LFGHEKGAFTGAMARRIGKFEEADGGTLLLDEISEMDVRLQAKLLRAIQEREIDRVGGSK 248 Query: 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQ 196 P++VN+R++ +N DL V +GTFR DLL RL ++LPPLRER +D++ + E+F + Sbjct: 249 PVKVNIRILATSNRDLAQAVKDGTFREDLLYRLNVVNLRLPPLRERPADVISLCEFFVKK 308 Query: 197 MCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFK 256 + P + A+ L+ +RWPGN+REL+N + R+V + I + + Sbjct: 309 YSAANGIEEKP-ISAEAKRRLIAHRWPGNVRELENAMHRAVLLSAGPEIEEFAIRLPDGQ 367 Query: 257 RRPPEDAIAVSETTSLPTLPLDLREF----QMQQEKELLQLSLQQGKYNQKRAAELLGLT 312 P +AV+ + R F + E++L+ +L+ N+ AA +LG++ Sbjct: 368 PMAPAPDVAVARGAQMAADAAS-RAFVGSTVAEVEQQLIIDTLEHCLGNRTHAANILGIS 426 Query: 313 YHQFRALLKKHQ 324 R LK++ Sbjct: 427 IRTLRNKLKEYS 438 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 223 bits (567), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 114/231 (49%), Positives = 162/231 (70%), Gaps = 1/231 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++ ++ + ++L+QV +A D VLI GE GTGKE+IA +H LS R P + +NCA Sbjct: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ +LL+SELFGH+ GAFTGA H GRFE ADGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ER+GGS+ + VNVR++ ATN DL MV + FR+DL RL ++LPPLR+R DI Sbjct: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 L+A++F +M R + + TE R+ L+++ WPGN+REL+NV+ER+V Sbjct: 526 PLLAKHFTQKMARHMNRAIDAIPTEALRQ-LMSWDWPGNVRELENVIERAV 575 >UniRef50_C5CF13 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CF13_KOSOT Length = 446 Score = 223 bits (567), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 123/321 (38%), Positives = 186/321 (57%), Gaps = 13/321 (4%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 + D LLG + S + + + + ++AP VLI GE GTGKE+IA +H LS R + F+ + Sbjct: 137 FTDELLGVSESIVSIKKLIENIAPKKVTVLIQGESGTGKEVIARMIHKLSGRKE--FVDI 194 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NC A+ ENL +SE+FG+E GAFTGA G E AD GTLFLDE++ P+ +Q KLLR Sbjct: 195 NCGAIPENLFESEIFGYEKGAFTGAGDSKKGLVEEADRGTLFLDEISELPITLQPKLLRF 254 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 IE G +R+G ++ + +VR++CATN DL +V EG FR DL RL ++LPPLRER Sbjct: 255 IETGTFQRIGSTKRKKTDVRIICATNRDLEKLVEEGKFREDLFYRLNVVRIKLPPLRERP 314 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI ++A+ F + E+ L P +E + L+NY WPGN+REL+N + + H +S Sbjct: 315 EDIAILAKQFVKDISAELGLRKRPKISETFIQALMNYHWPGNVRELRNCLLSILAVHDSS 374 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + + ++ D R A +E +L L EK ++ L++ N+ Sbjct: 375 ETLEEWMLFDVLGSRIDNSRDASNEDLTLEEL-----------EKRYIRKLLKKYSGNKT 423 Query: 304 RAAELLGLTYHQFRALLKKHQ 324 + A++LG++ LK+ + Sbjct: 424 KVAQVLGISKSTLYEKLKRWE 444 >UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FD14_DESAA Length = 470 Score = 223 bits (567), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 128/321 (39%), Positives = 193/321 (60%), Gaps = 12/321 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++++G + E+ E+ A PVLI GE GTGKEL A +H+ S+R PF+ +NC Sbjct: 152 NSIIGVSGPIKELKEEALRAAATHYPVLICGESGTGKELFAQAIHHASNRKLFPFVRINC 211 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ ++LL++ELFG+E GAFTGA+ PG+FE A GTLFLDE+ P+ +Q KLLR + Sbjct: 212 AAIPKDLLEAELFGYEKGAFTGARSDGKPGKFELAHQGTLFLDEVGDLPLEMQPKLLRAL 271 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 E E ERVGG++ ++ ++R++ ATN DL M+ +G FR DL RL + +PPLR+R++ Sbjct: 272 EDREFERVGGNKIIRSDLRIIAATNQDLDQMMADGRFRKDLFYRLNVIPINIPPLRKRKN 331 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI+ AEY Q+ E LP + A+ L N++WPGN+REL NV+ER++ Sbjct: 332 DIIPSAEYILRQLAAEANLPDI-SMDKSAQAALRNHQWPGNVRELSNVLERTLSALNGRT 390 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 L D+ PF ++ ++S L+ Q + E+E + +L+Q YN+ + Sbjct: 391 IGLSDL---PFYLHQDRKPLSNGGSSS-------LKAVQARIERESICSALEQTGYNKVK 440 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AAELLG+ +KK+ I Sbjct: 441 AAELLGIHRTLLYKKIKKYAI 461 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 185/311 (59%), Gaps = 11/311 (3%) Query: 17 EVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSE 76 ++ EQ+ +A VLI GE GTGKEL+A +HY S R + PFI +NCAAL E+LL+SE Sbjct: 153 QIYEQLKKIAQSKASVLIQGESGTGKELVARAIHYFSPRCEKPFIRVNCAALAESLLESE 212 Query: 77 LFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQ 136 LFGHE GA+TGA + GRFE A+ GTL LDE++ +Q KLLRV+E E ERVGG + Sbjct: 213 LFGHERGAYTGAVAKRIGRFELANEGTLLLDEVSEISPNIQAKLLRVLEEEEFERVGGEK 272 Query: 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQ 196 ++++VR+V TN DL + +GTFR DL RL + LPPLRER DI L+A + + Sbjct: 273 TIKIDVRIVATTNRDLAKEIQKGTFREDLFYRLNVVPIHLPPLRERREDIPLLANTYLEK 332 Query: 197 MCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDI--IIDP 254 E + +RA + L Y WPGN+RELKN+++R+V + + L++ +ID Sbjct: 333 YSSENNSSV-KSIEKRAMDYLSQYNWPGNVRELKNIMQRAVVMGSSEELGLENFTSLIDI 391 Query: 255 FKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYH 314 K + +++ ++ + + EKEL+ +L++ N+ +AA LL +T Sbjct: 392 KK----SEHTMCNDSVNIKKNGQSIED----AEKELIFTTLEKTGGNKTKAAGLLKITTR 443 Query: 315 QFRALLKKHQI 325 R L K+ I Sbjct: 444 TLRNKLNKYVI 454 >UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZV27_DESOH Length = 510 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 127/323 (39%), Positives = 186/323 (57%), Gaps = 22/323 (6%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++++G+++ VL ++ +A D VL++GE GTGKEL+A +H LS R + +NC Sbjct: 200 EHIIGQSDGLKYVLYKIEQIADSDTTVLVLGETGTGKELVARAIHNLSRRKNRTMLKVNC 259 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL NL++SELFGHE GAFTGA RH GRFE A+G TLFLDE+ P+ +Q KLLRV++ Sbjct: 260 AALPTNLIESELFGHEKGAFTGAHARHTGRFEVANGTTLFLDEIGELPLELQPKLLRVLQ 319 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE ER+G S +V+ R++ ATN +L V G FR DL RL + +PPLR+R D Sbjct: 320 DGEFERLGSSHSTKVDARIIAATNRNLEEEVRNGNFREDLWYRLNVFPITMPPLRDRLDD 379 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ E++ ++ R + + ETL Y WPGN+REL+NV+ER+V + Sbjct: 380 IPLLVEFYVKKISRRMG-KTIETIPSKIMETLQAYPWPGNVRELENVLERAVINSSGTKL 438 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN---Q 302 L D + PF+ ++ SE T E++ + L+Q ++ + Sbjct: 439 RLVDELKRPFR------GLSSSEKTLAAV------------ERDHIVRVLEQTQWKVGGK 480 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AAE+LGL RA ++K I Sbjct: 481 NSAAEILGLDRSTLRARMRKLNI 503 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 130/325 (40%), Positives = 192/325 (59%), Gaps = 10/325 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++ E L +LE + +A VLI GE GTGKEL A L+ SSR PF+++NCAA Sbjct: 145 IITEDEKILGILEFLKTVAQSKSSVLIQGESGTGKELFARYLYLHSSRRHMPFVAINCAA 204 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + +NLL+SE+FG E GAFTGA +R G+FE A+GGTL LDE+ +Q KLLRVI+ Sbjct: 205 IPDNLLESEMFGFEKGAFTGAIQRKVGKFELANGGTLLLDEVTEMTPHLQAKLLRVIQEK 264 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++R+GG PL V+VR++ TNAD+ + E TFR DL RL +++PPLRER+ D+ Sbjct: 265 EIDRLGGKMPLPVDVRIIATTNADVRKCIEEKTFREDLYYRLNVIPLKIPPLRERKGDVE 324 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+ YF + + PL P F + L Y WPGN+REL+NV+ER+V G + Sbjct: 325 LLGSYFLKKYSNLNEKPL-PVFANGTLKRLNAYDWPGNVRELENVIERAVLVCGGNVVLP 383 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQM-------QQEKELLQLSLQQGKY 300 + + ++ P A + SL + D+ + + EKEL+ +L + K Sbjct: 384 EHLYLEDQGSVSP--AAEEKTSCSLEEVSTDISGIDLSRGMTIWEMEKELIFSTLDKVKG 441 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N+ RA+E+LG++ R L+++Q+ Sbjct: 442 NKTRASEILGISVRTMRNKLQEYQM 466 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/248 (45%), Positives = 158/248 (63%), Gaps = 6/248 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++G + V ++ + D +LI+GE GTGKEL+A +HY R + PF+++NC Sbjct: 154 DNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAKAIHYNGHRREKPFVAINC 213 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ LL+SELFGH GAFTGA G+F++A GT+FLDE+ T P+ +Q KLLRV++ Sbjct: 214 GAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGTIFLDEIGTMPLHLQMKLLRVLQ 273 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+E+VG S+ ++++VR++ ATN +L V +G FRADL RL + LPPLRER D Sbjct: 274 EQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYYRLNVIPIALPPLRERRED 333 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH----- 240 I L+A YF + C E+ PL T A L NY WPGN+REL+NV+ER+V Sbjct: 334 IALLARYFLQKTCTEMNQPLI-SITPGAMNCLENYHWPGNVRELENVIERTVTLTDSIAI 392 Query: 241 GTSDYPLD 248 G SD P + Sbjct: 393 GKSDLPAN 400 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 133/327 (40%), Positives = 186/327 (56%), Gaps = 20/327 (6%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 L+G + + EV + + +A D VLI GE GTGKEL+A +HY S R PF+ ++C Sbjct: 138 TLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNSPRQGKPFVKIDCT 197 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENLL+SELFGHE GAFTGA R G+FE ADGGT+FLDE+ +Q KLLR ++ Sbjct: 198 AIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDISPALQAKLLRFLQE 257 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVGG++ +V+VR++ ATN DL V G FR DL RL ++LPPLRER+ DI Sbjct: 258 KAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLRERKEDI 317 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV-YRHGTSDY 245 ML+ +YF R+ + G T + LL Y WPGN+REL+NV ER+V G Sbjct: 318 MLLVDYFVSLSNRKFGKQV-TGLTRSVADILLQYNWPGNVRELRNVCERAVLMARGNVIT 376 Query: 246 P--LDDIIIDPFKRR-----PPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQG 298 P L + ++ + R P ED LP L+E + E+ + +L++ Sbjct: 377 PESLPEYLLRAVRGRTEAWHPAEDR---------GVLP--LKEMVAEMERSAILRALEEY 425 Query: 299 KYNQKRAAELLGLTYHQFRALLKKHQI 325 + N+ A LG++ A +K+ I Sbjct: 426 RGNKTAVARALGMSRTTLYAKMKELGI 452 >UniRef50_B8F9P9 Sigma 54 interacting domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P9_DESAA Length = 514 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 111/249 (44%), Positives = 157/249 (63%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 +++ D ++G V++QV+ +APL PVL++GE G GKE+IA+ +H SSR PF Sbjct: 188 LSQKSDEIIGADFGLKHVMQQVNKVAPLSSPVLLMGETGVGKEVIANAIHKYSSRRNEPF 247 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I +NC A++E L+DSELFGH GAFTGA + GRFERA G++FLDE+ P Q +L Sbjct: 248 IKVNCGAISETLIDSELFGHVRGAFTGAFENKRGRFERAHQGSIFLDEIGELPKAAQLRL 307 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E E VG ++ ++V+ R++ ATN +L MV EG+FR DL RL + +PPLR Sbjct: 308 LRVLQEMEFEPVGSAKTIKVDARVIAATNRNLEDMVAEGSFRKDLYFRLKVFPIYIPPLR 367 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI + +YF + RE+ +P A + L Y WPGN+REL+N VER++ Sbjct: 368 ERACDIPALTQYFMHKKYREMGFAEYPSLAPGAVKRLEAYEWPGNVRELENAVERAMIVS 427 Query: 241 GTSDYPLDD 249 G DD Sbjct: 428 GGKTLHFDD 436 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/325 (40%), Positives = 194/325 (59%), Gaps = 23/325 (7%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++ ++ + +VL Q+ +AP D VLI GE GTGKEL+A +H S R F+ +NCAA Sbjct: 128 IVAQSKAMRQVLSQIKRVAPTDSTVLITGESGTGKELVADSIHRHSQRNGRRFVKINCAA 187 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + + LL+SELFG+E GAFTGA R PG+FE+A+GGT+FLDE+ P+ Q K+LRV+E Sbjct: 188 IPDTLLESELFGYEKGAFTGAAARKPGKFEQANGGTVFLDEIGDMPLETQAKILRVLEEK 247 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++R+GG +P+ V+VR+V ATN ++ MV +G FR DL RL +QLPPLRER DI Sbjct: 248 EVDRLGGVRPIPVDVRVVAATNRNIQKMVADGAFREDLFFRLNVFPIQLPPLRERPEDIP 307 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + E F +E + + A L ++WPGN+REL+N VE S+ Sbjct: 308 FLIEEFMKFSSKESTI------SPPAMHILCAHQWPGNVRELRNAVESSLL--------F 353 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTL------PLDLREFQMQQ-EKELLQLSLQQGKY 300 +++P + PP A +++ T L LDL +F++Q+ EK +L +L++ Sbjct: 354 GKEVVEP-EHLPPALAGSMAVPTPAGVLISGEDESLDL-DFRLQELEKGILVEALKRSDG 411 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 Q +AA LLG+ +KK+ I Sbjct: 412 VQAQAARLLGIKERSLWHRVKKYGI 436 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 117/231 (50%), Positives = 155/231 (67%), Gaps = 1/231 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G + + VLEQV +A D VLI+GE GTGKELIA +H LS R + I +NCA Sbjct: 386 DIIGISPAIRGVLEQVELVADSDSTVLILGETGTGKELIARAIHMLSQRKKRTMIKVNCA 445 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ LL+S+LFGHE GAFTGA + GRFE AD GTLFLDE+ P+ +Q KLLR ++ Sbjct: 446 AIPSALLESDLFGHEKGAFTGAIAQKSGRFELADRGTLFLDEVGDIPIDLQPKLLRALQE 505 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ERVGG QP+ V+VR++ ATN DL MV + FR DL RL + +PPLRER DI Sbjct: 506 REIERVGGHQPIPVDVRMIAATNRDLTGMVEKRLFRGDLYYRLNVFPILIPPLRERREDI 565 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 LMA+YF + R++ + F+ + LLN WPGN+REL+NV+ER+V Sbjct: 566 PLMADYFMRKTARKMNRAI-EAFSAETMDMLLNLPWPGNVRELQNVIERAV 615 >UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing protein n=9 Tax=Thermoanaerobacteraceae RepID=B0K3D1_THEPX Length = 526 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/323 (39%), Positives = 194/323 (60%), Gaps = 18/323 (5%) Query: 10 GEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 G+ FLE+ + V +A D VL+ GE GTGKEL A +HYLS R PFI++NCAA+ Sbjct: 214 GKNPRFLEIKDLVRQIAVTDSTVLLQGESGTGKELFARYIHYLSPRKNHPFIAINCAAIP 273 Query: 70 ENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 +NLL+SELFG+E G+FTGA++ PG+FE A+GGT+FLDE+ P+ +Q KLLRV+E + Sbjct: 274 DNLLESELFGYEDGSFTGARRGGKPGKFELANGGTIFLDEIGDMPLQLQAKLLRVLENRQ 333 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 +ER+G + ++VR++ ATN DL +++ FR DL RL V +PPLRER DI+L Sbjct: 334 VERIGATVSRPIDVRIIAATNKDLKELIDAKLFREDLFFRLNVFPVFIPPLRERRDDILL 393 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLD 248 + +++ +C E P F F+ A E L NY WPGNIRELKNVV +V Sbjct: 394 LLDFYLKNICLEQDKP-FKIFSPEAIEILQNYDWPGNIRELKNVVTYAV------SICKG 446 Query: 249 DIIIDPFKRRPPEDAIAVSET------TSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 DII + + ++ ++ +++ T+ P + +D Q++ + E+L ++ Sbjct: 447 DIITLHYLPKYLQNGLSSTKSQFGEVKTTHPIIQVD----QLKDQLEILLAKYGNSTQSK 502 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 K A+ LG++ L+K+ + Sbjct: 503 KLIAQELGISLATLYRWLRKYHL 525 >UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteobacteria RepID=NIFA_KLEPN Length = 524 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 130/312 (41%), Positives = 188/312 (60%), Gaps = 14/312 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++G++ + ++++ + ++ D VL+ GE GTGKELIA+ +H+ S R F+ NC Sbjct: 210 ENMVGKSPAMRQIMDIIRQVSRWDTTVLVRGESGTGKELIANAIHHNSPRAAAAFVKFNC 269 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL +NLL+SELFGHE GAFTGA ++ GRFE ADGGTLFLDE+ + Q KLLR+++ Sbjct: 270 AALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLDEIGESSASFQAKLLRILQ 329 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE+ERVGG + L+VNVR++ ATN L V G FR DL RL + LPPLRER+ D Sbjct: 330 EGEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHFREDLYYRLNVMPIALPPLRERQED 389 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS--VYRHGTS 243 I +A + ++ L ++ A L+ Y WPGN+REL+N +ERS + G Sbjct: 390 IAELAHFLVRKIAHSQGRTL--RISDGAIRLLMEYSWPGNVRELENCLERSAVLSESGLI 447 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 D D+I+ + PP+ A+A S L L E++ L +L++ + Q Sbjct: 448 DR---DVILFNHRDNPPK-ALASSGPAEDGWLDNSL------DERQRLIAALEKAGWVQA 497 Query: 304 RAAELLGLTYHQ 315 +AA LLG+T Q Sbjct: 498 KAARLLGMTPRQ 509 >UniRef50_A1VJQ6 Sigma54 specific transcriptional regulator, Fis family n=27 Tax=Proteobacteria RepID=A1VJQ6_POLNA Length = 391 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/333 (39%), Positives = 199/333 (59%), Gaps = 32/333 (9%) Query: 18 VLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 +L ++ +AP + V+IIGE GTGKEL+A R+H S+R +GPF+++NC A +E+L+D+EL Sbjct: 32 LLARLDQVAPTEATVVIIGETGTGKELLARRIHQGSAR-RGPFVAVNCGAFSESLIDAEL 90 Query: 78 FGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQP 137 FGHE+GAFTGA + G FE A+GG+LFLDE+ P+ +Q KLLRV++ ++ R+G +P Sbjct: 91 FGHESGAFTGASQARAGWFEAANGGSLFLDEIGDLPLALQVKLLRVLQERQIVRIGSRKP 150 Query: 138 LQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQM 197 ++++VRL+ ATN DL VN G FRADL RL+ ++L PL ER DI+ +A +F Sbjct: 151 IELDVRLIAATNVDLRDAVNAGHFRADLYYRLSVATLELRPLWERPGDILPLARHFLASY 210 Query: 198 CREIKL---PLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDI--II 252 + + + L PG A + LL + WPGNIREL+NVV ++ + D+ I Sbjct: 211 AKRLGIEGSTLTPG----AEQALLAHDWPGNIRELENVVHYALIVAPAAAIHASDLQSIQ 266 Query: 253 DPFKRR-------PP---EDAIAVSETTSLPTLPLDLREFQMQQEK-------ELLQLSL 295 + R PP + + + E ++PTL LRE ++ K E +Q +L Sbjct: 267 RSARSRARQPVALPPAVADSSASTPEVAAVPTLRQMLRELLLKSMKLNQPLLFEQVQATL 326 Query: 296 QQGKY-----NQKRAAELLGLTYHQFRALLKKH 323 + NQ + A LLGL+ + R LLK+H Sbjct: 327 VCTAFEFCHNNQVQTARLLGLSRNVLRTLLKQH 359 >UniRef50_A3EU11 Putative sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3EU11_9BACT Length = 463 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 132/324 (40%), Positives = 183/324 (56%), Gaps = 20/324 (6%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + +++G + S +E + +A D VLI GE GTGKEL+A +H S R GPFI+LN Sbjct: 156 ESDMVGSSPSMMECFRSIRKIAGTDACVLITGESGTGKELVARAIHERSKRSSGPFITLN 215 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A+ NL+ SELFG+E GAFTGA R G E A+ GT+ LDE+ P +Q LLRV+ Sbjct: 216 CGAIPSNLIQSELFGYEKGAFTGAHSRKIGHIEAANHGTIMLDEIGDMPFELQVNLLRVL 275 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 ++G+++RVG S + V+VR++ AT+ DL EG FR DL RL V LPPLR+R + Sbjct: 276 QFGKIQRVGSSAEIPVDVRIIAATHIDLEKACREGRFREDLYYRLHVLRVSLPPLRDRGA 335 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+A YF + E P F+ A E + Y WPGN+REL N ++ +V S+ Sbjct: 336 DISLLARYFCKRFSAEYGATSKP-FSAEALEVIQAYSWPGNVRELINKIKSAVL---MSE 391 Query: 245 YPLDDIIIDPFK---RRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 PL I+P P A +T LRE + E+E L+ +LQ+ + N Sbjct: 392 GPL----IEPRDLQLENMPHPAKKSGKT---------LREIREITERETLRETLQKFENN 438 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 R A LG+T LLKKH++ Sbjct: 439 VSRTARELGVTRTTLYDLLKKHKL 462 >UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR5_9BACT Length = 442 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 124/321 (38%), Positives = 187/321 (58%), Gaps = 22/321 (6%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ +F+++L +AP D PVL++GE GTGKELIA ++H S+R PFI++NCAA Sbjct: 140 MVGKSEAFIQMLNLADTVAPTDAPVLVLGESGTGKELIARQVHSKSNRADKPFITVNCAA 199 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E L +SELFGH+ G+FT A + + G+ A+GGTLFLDE+ P +Q KLLR ++ Sbjct: 200 VPEGLFESELFGHKKGSFTSADRDYKGKILEAEGGTLFLDEIGELPQSIQVKLLRFLQES 259 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++ VG + P++V+VR+V ATN L M +G FR DL RL V++PPL +R DI Sbjct: 260 EIQPVGSATPMKVDVRVVAATNRSLKQMTEKGEFRDDLFYRLNVFPVEVPPLSKRREDIK 319 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + E F+ + I F+E+A E L+NY W GNIREL+N + R G + Sbjct: 320 DLVELFSAKYGARIT------FSEKAMEKLINYSWTGNIRELENTIYRLCILQGKGEITE 373 Query: 248 DDIIIDPFKRRPPEDAIAVSETT---SLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 D + P + + ET +P L+L E EK ++ +L + N+ R Sbjct: 374 DKL---------PAEFCSNMETCLDMHMPDKELNLEEL----EKNIIIKALHKFDGNKSR 420 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA+ L + H L+K++I Sbjct: 421 AAKYLCIPRHVLLYRLEKYEI 441 >UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltaproteobacteria RepID=Q2LQP1_SYNAS Length = 555 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 121/307 (39%), Positives = 185/307 (60%), Gaps = 15/307 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N+L + ++EQ +A VLI+GE GTGKEL A LH S R +GPF+++NC Sbjct: 240 ENILTQNPDMQRIIEQARRIAASSATVLILGESGTGKELFAQALHEASHRRKGPFVAINC 299 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 A+ L++SELFG+E GAF+GA K+ PG+FE A GTLFLDE+ P+ Q KLLRV+ Sbjct: 300 GAIPHTLIESELFGYEEGAFSGASKKGKPGKFELACDGTLFLDEIGELPIDSQAKLLRVL 359 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 E +++R+GG+ P+ V+ RLV ATN DL A+ N G FR+DL R+ +++PPLR+R Sbjct: 360 EERKIDRLGGTAPIAVDFRLVVATNRDLTALANSGKFRSDLFYRINEFPIEIPPLRQRLD 419 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+AE+F + C++ L + P F+E A + L++Y WPGN+REL++++ + ++ Sbjct: 420 DIPLLAEHFLTKACQQEGLAM-PKFSEEAIKVLMSYEWPGNVRELRSLIRQMAWKFQGMT 478 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 L ++ K R T+ L E + E+ ++ +LQ N+ Sbjct: 479 VELHNLPQAFHKERK-------------VTMSGTLEEQLARAERNAIETALQTSNGNRAL 525 Query: 305 AAELLGL 311 AA +LG+ Sbjct: 526 AARMLGI 532 >UniRef50_Q73KY8 Sigma-54 dependent transcriptional regulator, putative n=1 Tax=Treponema denticola RepID=Q73KY8_TREDE Length = 505 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 130/309 (42%), Positives = 180/309 (58%), Gaps = 10/309 (3%) Query: 17 EVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSE 76 E LE ++A D VLI+GE G GKELIA +LH S R PFI +NCAAL E LL+SE Sbjct: 204 EKLELCRNIAASDASVLILGESGVGKELIAEQLHLNSRRVNNPFIRVNCAALPEGLLESE 263 Query: 77 LFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQ 136 LFGH GAFT A GRFE AD GT+FLDE+ P+ +Q KLLRV++ ERVG ++ Sbjct: 264 LFGHVRGAFTDAISDRKGRFELADKGTIFLDEIGDIPLTLQTKLLRVLQEMAFERVGSNK 323 Query: 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQ 196 L V+ R++ ATN ++ +V +G FR+DL RL + +PPLR R+ DI +A +F + Sbjct: 324 TLTVDTRIIAATNKNIEELVRQGKFRSDLYYRLNVLPIYIPPLRNRKDDIQELAHFFLKK 383 Query: 197 MCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFK 256 +E+K P F GF+ A + + Y WPGNIREL+N VER+ G Y + ++ F+ Sbjct: 384 FSKEVKKP-FLGFSPDAEKLINAYSWPGNIRELENAVERACV-LGKPPYIEEKDLLLKFE 441 Query: 257 RRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQF 316 E + S P L + +F+ K + L + K+NQ AAE LG+ Sbjct: 442 SSSFEPEVNYSN----PDLKSAVNDFK----KSFIVKILNEHKWNQTAAAEKLGIQRTYL 493 Query: 317 RALLKKHQI 325 L+K+ +I Sbjct: 494 SRLIKELEI 502 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 129/346 (37%), Positives = 192/346 (55%), Gaps = 32/346 (9%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G FL +LE+ +A VL++GE GTGKE+ A +H++S R GPF++LNCA Sbjct: 147 TVIGRDAHFLRLLERARAVASSKATVLVLGESGTGKEVFARFIHHVSDRKAGPFVALNCA 206 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E LL+SELFGHE GAFTGA G+FE+A GGTL LDE+ P+ +Q KLLRV++ Sbjct: 207 ALPEGLLESELFGHEKGAFTGAVMSKKGKFEQAHGGTLLLDEIGEVPLHLQAKLLRVLQE 266 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++R+GG +P++V+V ++ TN DL A V EG FR DL RL ++LP +RER DI Sbjct: 267 EEVDRLGGKEPVKVDVHVLATTNRDLGAAVREGNFREDLFYRLNVIPIRLPAMRERPEDI 326 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A++F + + P + +R+ L Y+WPGN+REL+N+VER+V + Sbjct: 327 SLLADHFIEKYTARYQKPA-KKLSAASRQRFLEYQWPGNVRELENLVERAVLLSAGPELE 385 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSL-------PTLPLDL-------------------- 279 D D PP A+ + L P DL Sbjct: 386 PWDFWEDEL---PPAGAVTGATDPELAGSANPEPVAAADLALAGSNTDAAASAAEIAIDP 442 Query: 280 -REFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 R E++++ +L+Q N+ AA++LG++ R L +++ Sbjct: 443 SRHSLWDVERQMILRALRQTSDNRTHAAKMLGISVRTLRNKLNEYR 488 >UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWE6_HALO1 Length = 684 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 126/320 (39%), Positives = 190/320 (59%), Gaps = 8/320 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++GE+++ + +Q+ + V I GE GTGKELIA+ +HY S+R F++ NC Sbjct: 373 ENIIGESSAMQAIFDQLRKVVDTRATVCIEGETGTGKELIATAIHYESNRRDKMFVAQNC 432 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL ENLL+SELFGH+ GAFT A G FE ADGGTLFLDE+ P+ +Q K+LRV++ Sbjct: 433 AALPENLLESELFGHKKGAFTSADTDKKGLFEIADGGTLFLDEIGEMPLSLQAKVLRVLQ 492 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 G + +G ++ QV+ R++CATN DL A V +G+FR DL RL ++LPPLRER D Sbjct: 493 EGTIRPLGSTRERQVDARIICATNRDLAAEVEKGSFRQDLYYRLVVFPIRLPPLRERRED 552 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + E+F + RE + + GF++ + + Y+WPGNIREL+N V+R V + + Sbjct: 553 IPPLCEHFLKRYSREFRQEVL-GFSQECLDVMSTYQWPGNIRELENEVQRLVIQTDAGSW 611 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 ++ + P + R E +A + L+ Q E+ LL +L++ N+ R Sbjct: 612 -IEVSELSP-RLRKVEGTLA-----RIAPKKGTLKAMMEQVERWLLAEALREHDNNKTRT 664 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+ LG+T L K+ + Sbjct: 665 AQSLGITREGLHKKLSKYSM 684 >UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LQ47_HALO1 Length = 665 Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 113/230 (49%), Positives = 152/230 (66%), Gaps = 1/230 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 +G + + VL VS + P + VL+ GE G+GKE++A +H S R PFI++NCAA Sbjct: 311 FVGSSPAAETVLRFVSKVGPSEATVLLTGESGSGKEMVARAIHDASRRASAPFIAINCAA 370 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E L++SELFGHE GAFTGA +R GRFE AD GTLFLDE+ P+ Q K LRV+E Sbjct: 371 LTETLIESELFGHERGAFTGASERKAGRFELADKGTLFLDEVGELPLSCQTKFLRVLEEQ 430 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ERVGG + + V+VR+V ATN DLP+MV +G FR DL RL+ +PPLR R SDI Sbjct: 431 VFERVGGGRTIAVDVRVVAATNRDLPSMVRQGRFREDLYYRLSVIHTVVPPLRARTSDIP 490 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 ++AE+F + +++ + GF+ A L + WPGN+REL+N VER+V Sbjct: 491 VLAEHFLARFRKQVARRV-AGFSPEALAALTRHPWPGNVRELRNAVERAV 539 >UniRef50_Q3A7M8 Putative two component response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A7M8_PELCD Length = 492 Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 115/229 (50%), Positives = 152/229 (66%), Gaps = 1/229 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + + EV +++ AP D V+I GE GTGKEL+A LH S R +GPF+++NC+ Sbjct: 132 GMVGNSPAIREVFRKIALFAPSDAAVVITGETGTGKELVARALHDQSLRPEGPFVAVNCS 191 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+++ LL+SELFGHE GAFTGA + H GRFERADGGTLFLDE P+ Q KLLRV+E Sbjct: 192 AISDELLESELFGHEKGAFTGALRSHRGRFERADGGTLFLDEAGDMPLNTQAKLLRVLEE 251 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 G +ERVG + +V+VR+V ATN L V G FRADL R++ + LPPLRER DI Sbjct: 252 GMIERVGAERQQRVDVRIVAATNVPLEQAVGMGRFRADLYHRISVLRIHLPPLRERAEDI 311 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVER 235 + E+F R+ ++ T A L +Y WPGNIREL+NV+ER Sbjct: 312 PHLVEHFLKLFARKYGRRVYR-LTPEAVNLLRSYLWPGNIRELRNVLER 359 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 123/319 (38%), Positives = 187/319 (58%), Gaps = 8/319 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + S V + + +A + VLI GE GTGKEL+A +HY SSR PFI +NCA Sbjct: 141 NIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARAIHYNSSRRNNPFIKVNCA 200 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 L ++LL+SELFG+E GAFTGA GRFE A GT+F DE+ + Q KLLR I+ Sbjct: 201 NLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFFDEIGEISLATQAKLLRAIQE 260 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E +RVGG++ ++VNVR++ ATN L V EG FR DL RL +++PPLR+R+ DI Sbjct: 261 KEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFRLNVVNIEIPPLRDRKEDI 320 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F + +E + GF++ A + L+ Y WPGN+REL+NVVERS+ + Sbjct: 321 PLLIAHFLAKYNKEFNKEI-KGFSKEAIKLLIGYDWPGNVRELENVVERSIIMARGAIIV 379 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 +DI + + P + + E SL + D+ E++++ +L++ + + A Sbjct: 380 PEDIQLGATVSQQPTELEILDENLSLKQIISDV-------ERKVILKALEENNWCRTTVA 432 Query: 307 ELLGLTYHQFRALLKKHQI 325 ++L + A +K+ I Sbjct: 433 KVLKINRRSLYAKMKELGI 451 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 115/233 (49%), Positives = 153/233 (65%), Gaps = 2/233 (0%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + ++G + V E ++ +AP VLI GE GTGKELIA +H S R + P+I LN Sbjct: 199 QSEIIGYSPPIKRVSEIIAKIAPSSATVLIRGETGTGKELIAKAIHNYSPRKEKPYIKLN 258 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAA+ ENLL+SELFGHE GAFT A++ GRFE ADGGTLFLDE+ + +Q K+LR++ Sbjct: 259 CAAIPENLLESELFGHEKGAFTDARETRKGRFELADGGTLFLDEVGDLSLPLQAKILRIL 318 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E ERVGGS+ ++V+VR+V ATN DL MV G FR DL RL + PPLR+R Sbjct: 319 QEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLFYRLNVIPIFSPPLRDRGD 378 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 D++L++ YF + C+ L T +A E L +Y WPGNIREL+N +ER V Sbjct: 379 DVILLSRYFLERFCKRHAKELH--LTPKAEELLKHYDWPGNIRELENSIERLV 429 >UniRef50_Q6FC38 Putative sigma-54 dependent transcriptional regulator n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FC38_ACIAD Length = 358 Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 128/326 (39%), Positives = 186/326 (57%), Gaps = 32/326 (9%) Query: 17 EVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSE 76 ++L QV +AP V+I GE GTGKELIA +H S R PF+++NC AL E L +SE Sbjct: 38 KLLNQVETIAPSSASVIIQGESGTGKELIAREIHLKSDRKNKPFLAVNCGALVETLAESE 97 Query: 77 LFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQ 136 LFG+EAGAFTGA K G FE ADGGTLFLDE+ P+ +Q KLLRV++ E+ RVGG + Sbjct: 98 LFGYEAGAFTGANKTRAGIFETADGGTLFLDEVGELPLTLQVKLLRVLQEKEVVRVGGRK 157 Query: 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQ 196 P+ +NVR++ T+ DL V E FR DL RL V+ + PLRER+ DI+ + ++F Sbjct: 158 PIPINVRILSGTHVDLRKAVAENKFRLDLYYRLNVVVLNILPLRERKGDILPLVDFFLSS 217 Query: 197 MCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFK 256 +++ + P ++RAR LLNY WPGNIREL+N + ++ G L+ Sbjct: 218 YSQKL-ITTKPNISDRARNALLNYSWPGNIRELENNIHYALLVSGGKTIDLEH------- 269 Query: 257 RRPPEDAIAVSETTSLPTLPLD--LREFQ------MQQ---------EKELLQLSLQQGK 299 + SE T LP + ++EF+ Q+ E +++ + Sbjct: 270 -------LRFSEETGSAVLPDNDLIQEFESILKRLFQEYDGEAWHIIEDKIVNTAFSSCW 322 Query: 300 YNQKRAAELLGLTYHQFRALLKKHQI 325 NQ + A++LGL+ + R LL ++ + Sbjct: 323 NNQVKTAKMLGLSRNVLRNLLSRYNL 348 >UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4T0_9DELT Length = 461 Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 124/326 (38%), Positives = 193/326 (59%), Gaps = 22/326 (6%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + ++G+ + +V + +A D PVL+ GE GTGKEL+A +H S R Q P +S+N Sbjct: 145 RHGIVGDCPAMRDVYAMIDKVAASDAPVLVHGESGTGKELVAMAIHQASPRRQQPLVSIN 204 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A+ ENLL+SE FGHE GAFTGA G+ E A+ GTLFLDE+ P+ +Q KLLR + Sbjct: 205 CGAIPENLLESEFFGHERGAFTGATNTVKGKVEYAENGTLFLDEIGELPVNLQVKLLRFL 264 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + +RVGG + L+VNVR++ ATN ++ + G FR DL R+ + LPPLR+R Sbjct: 265 QDMRFQRVGGRKTLEVNVRVLAATNVNIQEAMRLGQFREDLYYRIGVVGIHLPPLRDRGE 324 Query: 185 DIMLMAEYF----AIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 D++L+A +F Q+ ++I+ GF+ A E + NY WPGN+REL+N V R++ Sbjct: 325 DVVLLANHFLEIHGKQLPKKIQ-----GFSPEAMEAIRNYPWPGNVRELENKVRRAI--- 376 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPT-LPLDLREFQMQQEKELLQLSLQQGK 299 I+++ + P +A ++ P LRE + Q E++++ +L++ + Sbjct: 377 ---------ILVEGSRITPQSLGLAGEASSPGPARAETTLREARTQLERQMMLQALRRFE 427 Query: 300 YNQKRAAELLGLTYHQFRALLKKHQI 325 N +A+E LG++ F LL+KH+I Sbjct: 428 GNIVKASEALGVSRPTFYDLLRKHEI 453 >UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein atoC n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4268 Length = 475 Score = 220 bits (561), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 128/317 (40%), Positives = 187/317 (58%), Gaps = 8/317 (2%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + +EV + V +AP D PVLI GE GTGKEL+A +H S R PF++LNCAA Sbjct: 142 IIGSCPAMMEVYKAVGRVAPQDVPVLITGESGTGKELVARAVHQYSRRAGRPFVALNCAA 201 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E LL+SELFGHE GAFTGA +R GRFE+ DGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 202 IPEQLLESELFGHEKGAFTGADRRRIGRFEQCDGGTLFLDEIGDMPLALQSKLLRVLQEQ 261 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ERVGG + ++ +VR++ AT+ DL A GTFR DL RL ++LPPLR+R D+ Sbjct: 262 AFERVGGGETVRTDVRIISATHRDLKARAAAGTFRPDLYYRLGVFTMRLPPLRDRAEDLP 321 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR-HGTSDYP 246 L+ +F + RE+ + + A L Y WPGN+REL++V+++++ R GT P Sbjct: 322 LLVRHFLGRFNRELGRRV-SDISAEALARLTQYAWPGNLRELQSVLKQALLRTTGTVLLP 380 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLD------LREFQMQQEKELLQLSLQQGKY 300 + P + A ++ L L E +++ ++ LL + ++ + Sbjct: 381 SALADMAGPSAAPASEPPARADLHQFVRRRLSDGSENLLEEARLELDRFLLPMVMELTRG 440 Query: 301 NQKRAAELLGLTYHQFR 317 NQ RAA +LG+ R Sbjct: 441 NQVRAARVLGVARLTLR 457 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 220 bits (561), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 128/317 (40%), Positives = 197/317 (62%), Gaps = 15/317 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+++G + + + EQV +A + VLI GE GTGKE++A +H LS R +GPF+++NC Sbjct: 141 DDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQSIHRLSHRNKGPFVAINC 200 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ E LL+SELFG+E GAFTGA+K PGRFE A GGTLFLDE+ P+ +Q KLLRV+ Sbjct: 201 AAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFLDEIGDMPLYLQAKLLRVL 260 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + +ERVGG++ ++V+VR++ AT+ DL +M+ FR DL RL + +PPLRER+ Sbjct: 261 QERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLYFRLNVIPLYVPPLRERKE 320 Query: 185 DIMLMAEYFAIQMCREI-KLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH--- 240 D+ + +Y+ + C+ + K P F+ +A + + +Y WPGNIREL+N+VE V Sbjct: 321 DLYELIQYYMYKFCKRLGKEP--KRFSSQALKKIFDYHWPGNIRELENMVEYIVNLEIGD 378 Query: 241 --GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQ- 297 S P + +R E+ + +T S LP L + +E+ ++Q +LQ+ Sbjct: 379 LVTISSLPASIREMSKDQRHDMEEEMKEPQTVS--HLPKSLYKINEVEEQLIIQ-ALQRF 435 Query: 298 --GKYNQKRAAELLGLT 312 +++AAE LG++ Sbjct: 436 GTSTEGKRKAAEALGIS 452 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 220 bits (561), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 132/323 (40%), Positives = 194/323 (60%), Gaps = 14/323 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +D ++G + + E+ +Q+ +A D VLI GE GTGKE++A+ +H S+R GP + +N Sbjct: 144 RDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKEVLANLIHVNSARRNGPMVKVN 203 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAAL E+LL+SELFGHE GAFTGA + GRFE A G++FLDE+ + Q+KLLR++ Sbjct: 204 CAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHKGSIFLDEIGEMTLATQKKLLRIL 263 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E ERVGG+ ++V+VR++ ATN DL A V GTFR DL RL + LP LR+R Sbjct: 264 QEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRLNVITLHLPALRQRIG 323 Query: 185 DIMLMAEYFAIQMCREIKLPLFP--GFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+AE+F + + P P +E A E L NY WPGN+R+L++ +ER+V Sbjct: 324 DIPLLAEFF---LDKYRYAPSSPPARISEEAMERLNNYDWPGNVRQLEHEIERAVILSRG 380 Query: 243 SDYPLDDIIIDPFKRRPPEDAIA--VSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + + + + P R + IA + E ++L L D+ E+ LQ +L Q Sbjct: 381 NVITSEHMSLVPSSRSALQVDIAARLREKSTLEELLADV-------ERLALQEALVQHDD 433 Query: 301 NQKRAAELLGLTYHQFRALLKKH 323 + K AA LGL+ +F+ KK+ Sbjct: 434 DLKVAARSLGLSEAEFQKRQKKY 456 >UniRef50_B3QUF0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QUF0_CHLT3 Length = 470 Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 113/231 (48%), Positives = 150/231 (64%), Gaps = 2/231 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ-GPFISLNCA 66 L+G +++ + + ++ +D VLI GE GTGK L AS +H LS R G FI +NCA Sbjct: 155 LIGNSSAMKSLRAMLEQISGIDSTVLIRGETGTGKNLAASIIHKLSRRQSAGKFIEINCA 214 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E LL++ELFGHE GAFT A+ G FE ADGGT+FLDE+ +A M VQ KLL V+E Sbjct: 215 ALPETLLEAELFGHEQGAFTDAKSTKKGLFEIADGGTIFLDEIDSASMAVQSKLLSVLET 274 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 RVGG++P+ +VRL+CATNA L V G FR DL R+ +PPLRE D+ Sbjct: 275 KAFRRVGGTKPITADVRLICATNASLEEKVTAGKFREDLFYRINVISFLMPPLRELGEDV 334 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 +L+AE F + +E+ PL PG TE A+ L + W GN+REL+NV+ER+V Sbjct: 335 ILLAERFVQRFSQEMNKPL-PGLTETAKAVLRRHLWKGNVRELRNVIERAV 384 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 180/309 (58%), Gaps = 20/309 (6%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +L+ +++ ++ + + +AP D VLI GE GTGKE++A +H LS+R P + ++C Sbjct: 144 DLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKEVVARAIHALSTRRFHPMVPVHCG 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E LL+SELFGHE GAFTGAQ R G+FE A+GGT+FLDE+ + Q LLRV++ Sbjct: 204 ALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGTVFLDEIGDISLKTQTDLLRVLQE 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ RVGG+QP++V+ R+V ATN DL ++ EG FR DL RL ++LPPLR+R DI Sbjct: 264 REIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRPDLFYRLNVFRIELPPLRDRREDI 323 Query: 187 MLMAEY----FAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 L+ + FA QM + + P A L Y WPGN+REL+N VER++ Sbjct: 324 PLLVNHFTKKFAEQMNKRVTRVASP-----AMNMLQQYPWPGNVRELENAVERAMVVAQE 378 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + D ++ A A +T+ P L + EKE + L + +NQ Sbjct: 379 PELRETDFVLKV-------KAAATMSSTNGTGTPKTLEDI----EKEHILHVLDETNWNQ 427 Query: 303 KRAAELLGL 311 RAAE+L + Sbjct: 428 TRAAEMLDI 436 >UniRef50_D2R4Q9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4Q9_9PLAN Length = 644 Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 138/322 (42%), Positives = 183/322 (56%), Gaps = 25/322 (7%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+GE S + V +A D VLI+GE GTGKE++A +HYLS R PFI++NCAA Sbjct: 329 LVGECASIGALRSAVKRVADTDLAVLILGENGTGKEVVAQSIHYLSKRRHEPFIAVNCAA 388 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 ++E+LL+SELFGHE GAFT A++ G+FE A GTLFLDE+ + Q KLLRV+E Sbjct: 389 ISESLLESELFGHEKGAFTDAREMRVGKFELAADGTLFLDEIGDMSLGGQAKLLRVLEEK 448 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 + RVGGS P+ R++ ATN +L +V FR DL RL + LPPLR R DI+ Sbjct: 449 VVVRVGGSVPIPTKARVLAATNQNLAELVRAKRFREDLFFRLNVVSLDLPPLRARGEDIV 508 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+AE+F Q + L P FT AR+ LL + WPGNIREL+N++ER Y + Sbjct: 509 LLAEHFLKQFAARARRRL-PKFTAAARKRLLMHPWPGNIRELRNLMERLAYLAPEDQDKI 567 Query: 248 D----DIIIDPFKRRPPEDAIAVSETTSL--PTLPLDLREFQMQQEKELLQLSLQQGKYN 301 D + I+ P S TSL TL REFQM E + +++ + N Sbjct: 568 DAGDLEFILSP----------GTSPATSLGDGTLADATREFQM----EFIHKTIESTRGN 613 Query: 302 QKRAAELLGLT----YHQFRAL 319 AAE +GL Y + R L Sbjct: 614 MTLAAEKMGLQRSNLYRKMRQL 635 >UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ER80_ACIF5 Length = 545 Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 138/343 (40%), Positives = 188/343 (54%), Gaps = 26/343 (7%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + + V V AP VL+ GE GTGKE+IA +HYLS R F+SLNCA Sbjct: 200 NVIGNSRAMQAVFADVHQAAPGKATVLLRGESGTGKEVIARAIHYLSPRRDKAFVSLNCA 259 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E++L+SELFGHE GAFTGA + GRFE ADGGTLFLDE+ Q KLLRV++ Sbjct: 260 ALPESILESELFGHERGAFTGATQERKGRFELADGGTLFLDEIGDISPAFQAKLLRVLQE 319 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG+Q +VNVR++ ATN +L V++G FRADL R+ + LPPLRER DI Sbjct: 320 REFERVGGTQTRRVNVRIIAATNRNLEEAVSKGEFRADLYYRINVVSIFLPPLRERREDI 379 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS-VYRHGTSDY 245 + E+F + E + L T A +T+++ WPGN+REL+N VER+ G Sbjct: 380 PALIEHFLARYNAENQRKLT--LTPEALQTMVSCYWPGNVRELENCVERTATMMRGDIIR 437 Query: 246 PLD---------DIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQ----------- 285 LD + + P + P + +S S+P E Q+ Sbjct: 438 NLDVPCQRNQCLSMALRPLEGSHPIVTMKLSSGMSVPPHAAPDVEGQVTDASGAGDGEGS 497 Query: 286 ---QEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 E++ L ++ + + Q +AA LLG T + L KH I Sbjct: 498 LPLSERDRLIQAMDRCGWVQAKAARLLGTTTRKLGYALNKHGI 540 >UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIF3_SORC5 Length = 460 Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 113/242 (46%), Positives = 157/242 (64%), Gaps = 3/242 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+GE+ + L++ EQ++ A V + GERGTGKEL+A +H S R +GP +NCAA Sbjct: 141 LIGESRAMLDLREQIARAAKATATVFVTGERGTGKELVARAIHGASKRARGPLEKMNCAA 200 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + L++SE+FGHEAGAFTGA K+ G+FERA GGTLFLDE+ P+ +Q KLLRV++ Sbjct: 201 VPSELIESEMFGHEAGAFTGATKQRRGKFERASGGTLFLDEVGDMPLAMQAKLLRVLQER 260 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E+ERVGG + ++V+VR+V ATN D+ A EG FR DL DRL + LPPLR R D+ Sbjct: 261 EIERVGGHETIKVDVRVVAATNRDIEAACREGQFRPDLYDRLNVLPLSLPPLRARREDVP 320 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +A +F + P FT+ L+ Y +PGN+REL+N++ER V T D + Sbjct: 321 QLARHFLALATQANDRPGMA-FTDGGMGVLVAYSFPGNVRELRNIIERLVIL--TPDETI 377 Query: 248 DD 249 D+ Sbjct: 378 DE 379 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 220 bits (560), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 127/309 (41%), Positives = 177/309 (57%), Gaps = 21/309 (6%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D +LG + + +EQ S +AP D VL++GE GTGKE+ A +H S R PF++LNC Sbjct: 141 DTILGTSRPIRDAIEQASKVAPADTTVLLLGETGTGKEVFAQAIHNNSKRNGKPFVALNC 200 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +A + LL+SELFG++AGAFT A + G E A+ GT+FLDE+ P+ +Q KLLRV+E Sbjct: 201 SAFSRELLESELFGYKAGAFTNANRDKKGLIEEANTGTIFLDEIGEMPLDLQSKLLRVLE 260 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE +VG ++P +VNVR++ ATN DL +G FR DL RL + LPPLRER+ D Sbjct: 261 TGEFIKVGDTKPTKVNVRIIAATNRDLKEESQKGHFREDLYYRLNVFAITLPPLRERKKD 320 Query: 186 IMLMAEYFAIQMCREI---KLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 I +AEYF +I K + P F E+ L + W GNIRELKNV+ER+V G Sbjct: 321 IPQLAEYFVGIFSAKINQRKQKVTPAFIEK----LQLHEWKGNIRELKNVLERAVIMAGG 376 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 D ++ + +D + +++ S P DL EK + L K N+ Sbjct: 377 DDLAVEHLPLD----------LQIADKASTPLSAFDLASV----EKLHIIRVLYHTKNNK 422 Query: 303 KRAAELLGL 311 AA LL + Sbjct: 423 TEAARLLNI 431 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 220 bits (560), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 126/319 (39%), Positives = 190/319 (59%), Gaps = 15/319 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G ++ V + + +LA + VLI GE GTGKEL+A LH+ SR PF+S+NC+ Sbjct: 278 NIIGASHKMQAVYQLLENLADFETTVLITGESGTGKELVAKALHHTGSRAFKPFVSVNCS 337 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL ENLL+SELFGH GAFTGA + + GRF+ A GTL LDE+ +Q KLLRV++ Sbjct: 338 ALAENLLESELFGHVKGAFTGAIRDYQGRFQAAHTGTLLLDEIGDISPRIQLKLLRVLQE 397 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVG QP++V+VR++ TN DL V G FR DL RL ++LPPLRER DI Sbjct: 398 REFERVGDVQPIKVDVRVIACTNQDLKEKVGLGEFREDLYYRLNVMEIKLPPLRERREDI 457 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A++F + ++ + + PG +++ +NY WPGN+REL++ +ER+ Sbjct: 458 PLLADHFTARFEKKFNITI-PGVSDKVMNAFMNYHWPGNVRELEHSIERATVLCRDKMIS 516 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 L+ I P E IA + + S P L ++ + E++ +L++ +N+ +AA Sbjct: 517 LEHI--------PGE--IAEAYSLSGPRLK---KQPAADEPNEIID-ALKRTGWNKAKAA 562 Query: 307 ELLGLTYHQFRALLKKHQI 325 LLG++ ++K+ I Sbjct: 563 RLLGVSRKTIYRKIEKYGI 581 >UniRef50_B9M2U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=13 Tax=Proteobacteria RepID=B9M2U3_GEOSF Length = 474 Score = 219 bits (559), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 126/323 (39%), Positives = 192/323 (59%), Gaps = 19/323 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ L+V + ++ D V I GE GTGKEL+A LH +S R GPF+ +NC Sbjct: 146 GIIGKSPQMLQVFSMIRKVSLSDVAVFITGESGTGKELVAKALHNMSLRKNGPFVPINCG 205 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENLL+SE+FG E GAFTGA R G+ E A GT+FLDE+ P +Q KLLR ++ Sbjct: 206 AIPENLLESEMFGTERGAFTGAHARILGKAEYAHKGTMFLDEIGELPGNLQVKLLRFLQE 265 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 L+RVGG + + V+ R++ ATN D+ + EG FR DL R+A + LPPLRER DI Sbjct: 266 KVLQRVGGREDIAVDARIISATNMDIAKAIGEGLFREDLYYRIAVITINLPPLRERGDDI 325 Query: 187 MLMAEYF----AIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 ML+A F + C++ + GF+ + + L NY WPGN+REL+N V+R+V Sbjct: 326 MLLANLFLKRATEEFCKKTR-----GFSTSSLKILKNYTWPGNVRELENRVQRAVI---M 377 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 SD PL I+P E+++ + P + L++ + + E+E++ +L + + N Sbjct: 378 SDSPL----IEPADLGLTENSMPLMMP---PMGCVTLKDARDRLEREMIISALGRQEGNI 430 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 +AAE+LG++ L+KK+ + Sbjct: 431 AKAAEVLGVSRPTLYDLMKKYSL 453 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 219 bits (559), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 132/307 (42%), Positives = 179/307 (58%), Gaps = 5/307 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++GE+ L + E + +A D VLI GE GTGKEL+A +H LS+R F++LNC Sbjct: 142 NNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKELVARAIHDLSNRSDKNFVALNC 201 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ + LL+SELFGH G+FTGA GRFE AD GTLFLDE+ +Q KLLRV++ Sbjct: 202 AAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTLFLDEIGDMKANLQVKLLRVLQ 261 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ELE VG ++ +V+VR++ ATN +L MV FR DL RL+ + LPPLRER SD Sbjct: 262 SRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFREDLYYRLSVIPIMLPPLRERGSD 321 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + L+ F + R K GF ++ E L NY WPGN+REL+N+VER V T Sbjct: 322 VPLLLNSFLEKFNRS-KQRKVQGFDKQVMEILSNYDWPGNVRELENLVERLVIIKTTGVI 380 Query: 246 PLDDIIIDPFKRRPPEDAIAV-SETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + D+ P K R + E +LP L + E L+ +L++ N+K Sbjct: 381 SIHDL---PEKYRGGRTTTVLHGEPMTLPDDGFCLNSAVEEFENRLILQALEKSGGNKKE 437 Query: 305 AAELLGL 311 AAELL L Sbjct: 438 AAELLNL 444 >UniRef50_B8FCN8 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCN8_DESAA Length = 529 Score = 219 bits (559), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 126/319 (39%), Positives = 185/319 (57%), Gaps = 11/319 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 ++ ++G V+E +APL+ PVL++GE G GKELIAS +H S R GP I +N Sbjct: 192 ENEVVGADYGLRGVMEMARQVAPLESPVLLLGETGVGKELIASAVHRASPRRNGPLIKVN 251 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A+ + L+DSELFGHE GAFTGA GRFERAD GT+FLDE+A Q +LLRV+ Sbjct: 252 CGAIPDTLIDSELFGHEKGAFTGASSMKRGRFERADEGTIFLDEVAELSPEAQVRLLRVL 311 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ERVG ++ V++R++ AT+ +L +V+ G FR DLL RL + +PPLR+R+ Sbjct: 312 QEKEIERVGAAETTHVDIRVIAATHRNLDGLVSMGRFRQDLLFRLKVFPIVIPPLRDRKG 371 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI + ++F ++KL P A + L++Y WPGN+REL+N VER++ G Sbjct: 372 DIPSLVQHFVRIKSLDMKLGTIPPLAPGAMDKLMDYSWPGNVRELENAVERALILSGGKK 431 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK- 303 + + K P + E+ SLPT+ + + + L L +G+ K Sbjct: 432 PVFQEFDLG-LKPGPKTKNV---ESLSLPTMDQAMADLMRK------ALVLAKGRVEGKG 481 Query: 304 RAAELLGLTYHQFRALLKK 322 AAE+LG+ R +KK Sbjct: 482 GAAEILGMHPMTLRNRMKK 500 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 219 bits (559), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 121/321 (37%), Positives = 190/321 (59%), Gaps = 14/321 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++G+++ + + A + VLI GE GTGKEL A +H S R G FI LNC Sbjct: 258 DNIIGKSDKINKTKDLAKKAAKTNSNVLIRGESGTGKELFAHAIHMESERVYGNFIKLNC 317 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHP-GRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ +LL+SELFG+E GAFTGA+K G+FE ADGGT+FLDE+ P+ +Q KLLRV+ Sbjct: 318 AAIPRDLLESELFGYEGGAFTGAKKEGKIGKFELADGGTIFLDEIGDMPLHMQAKLLRVL 377 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ER+G ++ +++VR++ ATN DL M+ EG FR DL RL V +PPLRER Sbjct: 378 QEREVERIGATRSKKIDVRVISATNRDLEKMIKEGEFREDLYYRLNVVTVNIPPLRERRE 437 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI +++EY ++ +++ F++ A L+NY+W G +R+L+N++ER+V + Sbjct: 438 DIKILSEYLLEKISKKLGKKT-KSFSKEAMSCLMNYKWEGGVRQLENIIERAV------N 490 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + +I+P + P + + + DL + Q EK+++ +L +N+ Sbjct: 491 LVEHNEMIEP--KHFPGNIV----SNKYIVEDSDLNKLINQVEKDIILETLIYCNWNKTL 544 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA+ L ++ + KH I Sbjct: 545 AAKKLNISRTSLYEKIAKHNI 565 >UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GM58_THISH Length = 509 Score = 219 bits (559), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 114/231 (49%), Positives = 153/231 (66%), Gaps = 1/231 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + +LGE+ + +L + +AP + VLI GE GTGKELIA +H S R QGP I +NC Sbjct: 187 EEILGESAALRRLLADIGRVAPSEATVLITGETGTGKELIARAIHRHSRRSQGPLIKVNC 246 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ L +SE FGHE GAFTGA +R GRF+ ADGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 247 AAITATLQESEFFGHEKGAFTGAAQRRDGRFKLADGGTLFLDEVGEMPLDLQAKLLRVLQ 306 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE E VG + ++V+VR++ AT+ DL MV EG FR DLL RL + PPLRER D Sbjct: 307 EGEFEPVGSGRTVRVDVRVIAATHRDLTQMVREGGFREDLLYRLNVFPLHAPPLRERGED 366 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS 236 ++L+AE A ++ R+ L P + R L + WPGN+REL+NV+ER+ Sbjct: 367 VVLLAEAIATRLARQEGATLAP-LSPADRARLKAHPWPGNVRELENVIERA 416 >UniRef50_A7HFT7 Sigma54 specific transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=A7HFT7_ANADF Length = 557 Score = 219 bits (559), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 132/289 (45%), Positives = 174/289 (60%), Gaps = 12/289 (4%) Query: 18 VLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 V E V +A D V I+GE GTGKEL+A LH S+R GPFI +NC+A+ E L++SEL Sbjct: 242 VFELVERVAASDAAVTILGETGTGKELVARALHARSARRDGPFIPVNCSAIAETLIESEL 301 Query: 78 FGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQP 137 FGHE GAF+GA++ G FE AD GT+FLDE+ P+ +Q KLLRV+E GE++RVG S+P Sbjct: 302 FGHEKGAFSGAERMRKGAFEEADRGTIFLDEIGELPLDLQPKLLRVLELGEVKRVGASRP 361 Query: 138 LQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQM 197 LQVNVR+V AT+ DL A V G FR DL RL V +PPLR+R D+ +AE F + Sbjct: 362 LQVNVRIVAATHRDLRAQVRAGRFREDLFYRLCVVPVTVPPLRQRRGDVRALAETFLARA 421 Query: 198 CREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFKR 257 LPL + A L Y WPGN+R+L+NVV+R++ G D + R Sbjct: 422 APR-GLPLR--WAPEALAKLEGYDWPGNVRQLRNVVQRALLFRGEGQCVSADAVTFEDTR 478 Query: 258 RPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 P +T LP L L+ E+E ++LSL++ K KRAA Sbjct: 479 AAPGPG-GDDDTLYLPGLTLE------DIEREAIRLSLRRNK--GKRAA 518 >UniRef50_C8R2Q7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2Q7_9DELT Length = 527 Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 124/326 (38%), Positives = 190/326 (58%), Gaps = 11/326 (3%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + +D ++G + E+ E SH+A + +LI GE GTGKEL+A +H S R P Sbjct: 197 CQQQDGMVGSSRRIQELRELTSHVADSEATILITGESGTGKELVADIIHKRSQRHNKPLF 256 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 NCAA++ENLL+SELFG+E GAFTGA RH G+FE A+GGT+FLDE+ +Q LL Sbjct: 257 KFNCAAVSENLLESELFGYEKGAFTGATSRHRGKFETANGGTIFLDEIGDISPRMQAALL 316 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ GE+ RVGG++ ++ + R++ ATN +L A V EG FR DL RL + LPPLRE Sbjct: 317 RVLQNGEIVRVGGNETIKTDARIIAATNVNLGAAVEEGRFRRDLYYRLNVINIHLPPLRE 376 Query: 182 RESDIMLMAEYFAIQ--MCREIKLPLFP-GFTERARETLLNYRWPGNIRELKNVVERSVY 238 R DI+ + +F + + + P G +R LL + WPGNIREL+NV++R++ Sbjct: 377 RREDIVPLVTHFVTKYRAAFQKNIDYLPNGIMDR----LLQHNWPGNIRELENVIKRAIL 432 Query: 239 RHGTSDYPLDDIIIDPFKRRPPED-AIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQ 297 + ++ + + P +D A+ + E L L+E + E +++ +L+Q Sbjct: 433 LARNNIITEKEVSFESHEDGPAQDNAVPILENWMLEQ---PLKETLAKLEGKIMASALKQ 489 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKH 323 +YN + A++L L +K+H Sbjct: 490 YQYNPQVVAKVLKLGKTTLYEKMKRH 515 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 219 bits (558), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 121/320 (37%), Positives = 189/320 (59%), Gaps = 11/320 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + +E+ Q+ +A + V+I+GE GTGKEL+A +HY S R PF+ +NCAA Sbjct: 139 IIGNSPKIVELKRQIEKVAKTNAWVMILGENGTGKELVAKSIHYQSPRKDYPFVDINCAA 198 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + + L ++E FG+E GAFT A R G+ E AD GTLFLDE+A + Q KLLRV+E Sbjct: 199 IPDELFEAEFFGYEKGAFTNAFTRKIGKLELADKGTLFLDEVADMSLSSQAKLLRVLEEK 258 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 + R+G + + V++R++ ATN D+ V +GTFR DL RL+ + +PPLRERE DI+ Sbjct: 259 QFSRLGSNTKITVDLRVISATNKDIQKEVEKGTFRQDLAFRLSVIPIYVPPLREREEDIL 318 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A YF + E K+ P ++ + T LNY WPGN+RELKN++ER V + S Sbjct: 319 LLANYFLRKFSVENKVEP-PILSDEVKNTFLNYNWPGNVRELKNLMERLVILNSES---- 373 Query: 248 DDIIIDPFKRRPPE--DAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 II + K PP + + + S+P L++ + + EK++++ +L+ N K Sbjct: 374 --IIYN--KDLPPHMLGNVKLEKEESIPITIRPLKDAKEELEKQMIKKALKVYNNNLKEI 429 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+ L + +K++ + Sbjct: 430 AKALDIDLSSLYRKIKQYNL 449 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 219 bits (558), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 129/324 (39%), Positives = 185/324 (57%), Gaps = 20/324 (6%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 N++G + EV E + +A VLI+GE G GKEL+A+ +HY S + ++ NC Sbjct: 217 SNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVANAIHYNSPNAEAALVTSNC 276 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A L ENL +SELFGHE G+FTGA H G FE+ADGGT+FLDE+ VQ KL+RV++ Sbjct: 277 APLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVGELSPTVQAKLVRVLQ 336 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ERVGGS+P++V+VR++ ATN +L MV +GTFR DL RL + +PPLRER SD Sbjct: 337 NRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLNVFPITVPPLRERGSD 396 Query: 186 IMLMAEYFAIQMCRE----IKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 ++ +A++F RE +K P A L++Y WPGN+REL+NV+ER+V Sbjct: 397 VIALADHFVSAFSRENGKNVKRISTP-----ALNMLMSYHWPGNVRELENVMERAVILS- 450 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 DD +I + PP + T+ L L E E E++ +L+ + Sbjct: 451 ------DDDVIHSYN-LPPSLQTSKESGTA---FGLTLEEKIKAVECEMIVEALKNSSGH 500 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 AA+ LGL ++++ I Sbjct: 501 IGEAAKELGLARRMLGVRMERYGI 524 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 137/319 (42%), Positives = 190/319 (59%), Gaps = 18/319 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DNL+G+++ L + E V +A VLI GE GTGKEL+A LH S+R GPF+ +NC Sbjct: 280 DNLIGKSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLAHSLHVGSNRCLGPFVKVNC 339 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ ENLL+SELFG+ GAFTGA+K G+FE+A+GGT+FLDE+ P+++Q KLLRV+ Sbjct: 340 AAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQANGGTIFLDEIGDMPLLMQAKLLRVL 399 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ER+G ++ V VR+V ATN L M+ + TFR DL RL +Q+P LRER Sbjct: 400 QEKEIERLGDNRARHVEVRVVAATNRPLEQMIADNTFREDLYYRLNVVTLQIPSLRERID 459 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D+ + EYF + L + G + A E NY WPGN+REL+NVVER+ Sbjct: 460 DLKDLVEYFLAKYNHAFGLNI-TGLSADALELFENYNWPGNVRELENVVERAFNL----- 513 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSL-PTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 +D IID P S+ S+ +LP L Q EKE + +L N+ Sbjct: 514 --VDGHIIDVMHLPPYLQKFGKSKRHSINKSLPSLLE----QVEKEAIADALSVTNGNKM 567 Query: 304 RAAELLGLTYHQFRALLKK 322 +AA++LG++ RA L K Sbjct: 568 QAAKILGIS----RAWLYK 582 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 133/314 (42%), Positives = 178/314 (56%), Gaps = 20/314 (6%) Query: 18 VLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 VL V +AP VLI GE GTGKE+IA +H S+R + FI+++CAALN NL +SEL Sbjct: 163 VLRTVQQIAPARSSVLITGETGTGKEVIAKAIHAASTRSKKAFIAVHCAALNANLFESEL 222 Query: 78 FGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQP 137 FGHE G+FTGA ++ GRFE ADGGTLFLDE+ Q KLLR++E ERVGG++ Sbjct: 223 FGHEKGSFTGANEKRIGRFEAADGGTLFLDEIGEIDAATQVKLLRILESRSFERVGGNET 282 Query: 138 LQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQM 197 L + RL+ ATN DL MV G FR DL RL ++LPPLR+R DI + +++ I Sbjct: 283 LYSDARLIAATNRDLRKMVQAGEFREDLYYRLDVINLELPPLRDRREDIPALLQHWLISS 342 Query: 198 CREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFKR 257 E +L + GFT A L Y WPGN+REL+NVVER L ++ Sbjct: 343 VTENQLNV-KGFTADAMARLCTYDWPGNVRELRNVVERMAVLSQQEYLDLPNL------- 394 Query: 258 RPPEDAI----AVSETTSL--PTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGL 311 P+ + +SET + LD+ E EK L+ +L++ N+ AAE LG+ Sbjct: 395 --PDHVLLGEQQLSETAKIEDKDKALDVAE----NEKVLILKALKESNNNRTLAAERLGM 448 Query: 312 TYHQFRALLKKHQI 325 + LK+ I Sbjct: 449 SRRTLHRRLKQFGI 462 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 123/320 (38%), Positives = 187/320 (58%), Gaps = 11/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++G + +++ + VLI GE GTGKELIA +H S+R PF+ +NC Sbjct: 356 NNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHNNSNRKNKPFVRVNC 415 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A++ ENLL+SELFG+E GAFTGA + PG+F AD GT+FLDE+ P+ +Q KLLRV++ Sbjct: 416 ASIPENLLESELFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVLQ 475 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+E VGG P ++VR++ ATN +L M+ +G+FR DL RL + LPPLRER+ D Sbjct: 476 EREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSFREDLYYRLNVLGINLPPLRERKED 535 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I +AE+F ++ +++ + G + A L+ Y WPGNIREL+N++ER++ D Sbjct: 536 IPELAEHFITKLNKKLHKTIL-GIKQDALNLLIEYSWPGNIRELENIMERAI---NLCDG 591 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D P +P E LP + + EK++++ ++++ K K A Sbjct: 592 DYIDSSYLPSYLKPVESKSFNLNIDIDHILPFE------EYEKQIIEAAMKKYKSFNK-A 644 Query: 306 AELLGLTYHQFRALLKKHQI 325 + LGLT+ KK+ I Sbjct: 645 GKALGLTHRTVSLKCKKYNI 664 >UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EN62_SORC5 Length = 648 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/319 (41%), Positives = 190/319 (59%), Gaps = 8/319 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G +++ +V+ Q+ + VLI GE GTGKELIA+ +HY S R F++ NCA Sbjct: 338 DIIGNSDAMRKVIGQLDKVVDTRVTVLIEGETGTGKELIAAAVHYRSRRRDKLFVAQNCA 397 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E+LL+SELFGH+ G+FTGA + G FE ADGGTLFLDE+ P+ +Q KLLR ++ Sbjct: 398 ALAESLLESELFGHKKGSFTGATEEKKGLFEIADGGTLFLDEITETPLSLQSKLLRALQE 457 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE+ VG + P VNVR+V ATN +L V +G FR DL RL ++LPPLRER DI Sbjct: 458 GEIRPVGATSPKHVNVRIVAATNRNLEDEVAKGRFREDLYYRLKVFPIRLPPLRERRDDI 517 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A +F + EI P GF+++A E ++ Y WPGN+REL+N V+R V + + Sbjct: 518 SLLAAHFLERYADEIGKPC-GGFSQQAMELMVAYDWPGNVRELQNEVQRIVIQLEPGAFG 576 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + ++ P + R E +A + T L+E EK L +L+ N+ AA Sbjct: 577 TPE-LLSP-RIRQVEGLVARAGTPK-----GSLKEMMDAVEKFFLLEALRGHNNNKTNAA 629 Query: 307 ELLGLTYHQFRALLKKHQI 325 + LG+T L+++ I Sbjct: 630 KSLGITREGLHKKLRQYGI 648 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 112/232 (48%), Positives = 153/232 (65%), Gaps = 9/232 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ + + E V+ +AP + VLI GE GTGKEL+A LH S R GPF+ +NCAA Sbjct: 139 MVGDSPAIEALRELVARVAPTEGWVLITGENGTGKELVARSLHEGSVRRSGPFVDVNCAA 198 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E L++SELFGHE GAFTGA R PG+FE+A GG LFLDE+ + Q ++LRV++ Sbjct: 199 IPETLIESELFGHEKGAFTGALSRRPGKFEQASGGVLFLDEIGDMALSTQARVLRVLQER 258 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 +L R+GG++ + V+VR+V ATN DLP M+ FR DL RL +++PPLRER SDI Sbjct: 259 QLTRIGGTRSIPVDVRVVAATNRDLPGMIARKEFREDLFYRLNVVSIRVPPLRERLSDIP 318 Query: 188 LMAEYFAIQMCREI----KLPLFPGFTERARETLLNYRWPGNIRELKNVVER 235 ++ E+F +CR+ KL F+ A E L WPGN+RELKN VER Sbjct: 319 ILVEHFVEILCRDFGHRPKL-----FSREALEALCERTWPGNVRELKNTVER 365 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 126/331 (38%), Positives = 194/331 (58%), Gaps = 19/331 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLD-KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +++G + E++ V+ +A + +L+ GE GTGK+L+A +HY S R + PF+++NC Sbjct: 143 DIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGKDLVAKAIHYQSRRQEKPFVAINC 202 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +A+ E L+++ELFGHE GAFT A+ G FE ADGGTLFLDE+ ++Q KLLRV+E Sbjct: 203 SAIPETLMEAELFGHEKGAFTDAKAMKKGLFEAADGGTLFLDEIGELSPLLQAKLLRVLE 262 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + RVGG + +QV+VR++ A+N DL MV +GTFR DL RLA V LPPLR+R+ D Sbjct: 263 DQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDGTFRQDLYYRLAIISVFLPPLRDRKED 322 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I+ + E+F + R+ K + G T+ R L+ + WPGN+RELKN +ER++ + Sbjct: 323 ILPLVEFFIERYNRKFKKSI-RGVTDNTRRLLMKHDWPGNVRELKNAIERAMILDEAENL 381 Query: 246 PLDDIIIDPF-------------KRRPPEDAIAVSETTSLPTLPLDLREFQMQQ-EKELL 291 D + PF PP + SLP L + +++ E+ + Sbjct: 382 RPDYL---PFAVAQQQAMYTAFESASPPAPIQQLPNGRSLPRLVIPEGGTSLEEVERAFV 438 Query: 292 QLSLQQGKYNQKRAAELLGLTYHQFRALLKK 322 ++++++ NQ AA LL ++ R LKK Sbjct: 439 EMAMKEANGNQTHAARLLDISRDALRYKLKK 469 >UniRef50_Q1N5U9 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Bermanella marisrubri RepID=Q1N5U9_9GAMM Length = 479 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 108/239 (45%), Positives = 160/239 (66%), Gaps = 1/239 (0%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + Y+ +++G++ + + Q+S AP +LI GE GTGKEL+A +H S R + Sbjct: 166 SNYQSDIIGQSPAIEHLQTQISLSAPTSANILIQGESGTGKELVARAIHQQSERQAQTLV 225 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 LNC A+ E L+DSELFGHE GAFTGA K+ GRFE A+ GTLFLDE++ P+ Q KLL Sbjct: 226 KLNCGAIPEGLVDSELFGHEKGAFTGAVKQRIGRFELANKGTLFLDEVSELPLDAQVKLL 285 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ GE ERVGG++ ++V+VR++ A+N +L V++G+FR DL RL VQ+PPLRE Sbjct: 286 RVLQEGEFERVGGNKTIRVDVRIIAASNKNLEQAVHDGSFRLDLYYRLNVFSVQVPPLRE 345 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 R+SD+ +++ +FA + C ++ F G + + + +Y+WPGNIREL N +E + H Sbjct: 346 RKSDLPILSHFFAKKACADMGKS-FKGLHMPSLKWMSHYQWPGNIRELSNWIEHNAILH 403 >UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2Z2_PELTS Length = 562 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 117/231 (50%), Positives = 155/231 (67%), Gaps = 3/231 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D L+ + +V+E V +A +D VLI+GE G GK +IASRLH LS R +GPFI++NC Sbjct: 240 DELIARSPQMKKVIEMVDKVAQVDSTVLIMGESGVGKGVIASRLHRLSRRAKGPFITINC 299 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 A+ E+LL+SELFG+E GAFTGA+K G E A+GGT+FLDE+ P+ +Q KLL+VI Sbjct: 300 GAIPEHLLESELFGYEGGAFTGARKEGKKGLLELANGGTVFLDEITELPLSLQVKLLQVI 359 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + +L RVGGS+ + V++R V ATN D+ MV EG FR DL RL V +PPLR R+ Sbjct: 360 QDKKLIRVGGSKYISVDIRFVAATNKDIQRMVAEGLFREDLYYRLNVIPVIIPPLRYRQE 419 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVER 235 DI ++ EYF ++ K FT A E L NY WPGN+REL+N+VER Sbjct: 420 DIPVLLEYFLEKL--NTKYEKNKKFTPEAIEILRNYNWPGNVRELENLVER 468 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/318 (41%), Positives = 191/318 (60%), Gaps = 10/318 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G + FL VL ++ ++ VLI+GE GTGKELIA +H S R P I++NC Sbjct: 334 EGIVGRSPVFLSVLHSINMVSAAPSSVLILGESGTGKELIARCIHRQSPRKNKPLITVNC 393 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL L++SELFGHE GAFTGA + G+FE ADGGT+FLDE+ P+ Q KLLRV++ Sbjct: 394 AALPAELIESELFGHEKGAFTGATDKRAGKFEMADGGTIFLDEIGELPIESQVKLLRVLQ 453 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVGGS+ ++V+VR++ ATN +L V EG FR DL RL V+LP LRER+ D Sbjct: 454 EKEFERVGGSKVIKVDVRVIAATNRNLEKEVAEGRFRLDLYYRLNVFPVELPSLRERKED 513 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A++F ++ ++ + + A + L +Y WPGNIRE+++V+ERS+ T+ Sbjct: 514 IPLLAQHFVDKLSEKLSRNI-TDISPDALKALRSYDWPGNIREMEHVMERSLLM--TTGT 570 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY-NQKR 304 L I++ +P I+ ++ + TL +M+ E L L +GK Sbjct: 571 ILKQIMLPKMAAQPVGTTISSADGNRIKTLE------EMEIEHILQVLKSCKGKVCGVGG 624 Query: 305 AAELLGLTYHQFRALLKK 322 AAELLGL + ++K Sbjct: 625 AAELLGLPPSTLNSKIRK 642 >UniRef50_Q01QL4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QL4_SOLUE Length = 457 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/323 (40%), Positives = 189/323 (58%), Gaps = 8/323 (2%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 AE+ L+G + ++ + +A VLI GE GTGKEL A LH R GP + Sbjct: 131 AEWTRQLIGGSRGMRQLHHIIHLVAGRRSTVLITGETGTGKELAARALHLGGKRSSGPMV 190 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 S+NC AL E+LL+SELFGH GAFTGA + GRFE+A GGTLFLDE+ P+ +Q KLL Sbjct: 191 SVNCHALPESLLESELFGHVRGAFTGAFQNRIGRFEQAQGGTLFLDEIGELPIDLQAKLL 250 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ E++R+G S+ ++V++R+V ATN DLP + EG FR DL RL +++PPLR Sbjct: 251 RVLQEREVQRLGSSETIKVDIRVVAATNCDLPRRIEEGKFREDLYYRLNVVPLEMPPLRR 310 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPG-FTERARETLLNYRWPGNIRELKNVVERSV--Y 238 R D+ ++A +F + CR +P P T A E L Y WPGN+R+L+NVVE ++ Sbjct: 311 RLEDVPMLAAHFVEKACRAESIP--PKMLTREALELLCGYSWPGNVRQLENVVEMAIALS 368 Query: 239 RHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQG 298 + P+D ++ P R P A A +LP LD E+ +L+ +L++ Sbjct: 369 EDRRTLTPMDFVL--PATTRKPAPA-APGPLIALPADGLDYERTLAVIERSILEQALRRT 425 Query: 299 KYNQKRAAELLGLTYHQFRALLK 321 N+K AA++L L A ++ Sbjct: 426 GGNKKAAADMLHLKRTTLSAKVR 448 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 107/232 (46%), Positives = 158/232 (68%), Gaps = 3/232 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G++ +V + + +AP + VLI+GE G+GKEL+A ++ S R PFI++NCA Sbjct: 161 HIIGKSAPMQQVYKLIGQVAPTNATVLIVGESGSGKELVARAIYQYSLRANKPFIAINCA 220 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENLL+SELFGHE G+FTGA + G+FE+ DGGT+FLDE+ P+ Q K+LRV++ Sbjct: 221 AIPENLLESELFGHERGSFTGAMAQRIGKFEQGDGGTVFLDEIGEMPISTQAKILRVLQE 280 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE R+G ++P++ +VR++ ATN DL A V + FRADL RL + LPPLRER DI Sbjct: 281 GEFSRLGSNEPIKTDVRIIAATNKDLAAAVAKREFRADLFYRLNVVKISLPPLRERVEDI 340 Query: 187 MLMAEYFAIQMCREIKLPLFPG-FTERARETLLNYRWPGNIRELKNVVERSV 237 + ++F + R LP P + +A +LL Y WPGNIREL+NV++R++ Sbjct: 341 PDLIDHFLAKHRR--YLPNAPTCISSQAMRSLLAYHWPGNIRELENVIQRAM 390 >UniRef50_C1SI14 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SI14_9BACT Length = 507 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 100/223 (44%), Positives = 148/223 (66%) Query: 18 VLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 + E ++A VLI GE G GKE+ A+ +H S+R PFI +NC + ENL+D+EL Sbjct: 206 LFESAKNVAKFSTSVLITGETGVGKEVFANYIHRNSTRNNEPFIKVNCGTIPENLIDNEL 265 Query: 78 FGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQP 137 FGHE GAFTGA GRFE AD GTLFLDELA P+ Q KLLRV+++GE ER+GG++ Sbjct: 266 FGHEKGAFTGADSTQKGRFELADKGTLFLDELAELPLNCQAKLLRVVQFGEFERLGGTKT 325 Query: 138 LQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQM 197 ++VNVR++ ATN DL M+ +G FR DL R+ +++PP+RER+ DI + +++ Sbjct: 326 IKVNVRIIAATNKDLIQMIEDGDFREDLYWRINVFPLKIPPIRERKKDIPDLITCLIMKI 385 Query: 198 CREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 C+ +++ P + E ++ Y WPGN+RE++N +ER + ++ Sbjct: 386 CKRLEITEPPVISPDQMEKIIQYDWPGNVREMENFLEREIIQN 428 >UniRef50_D0MD30 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD30_RHOM4 Length = 442 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 107/228 (46%), Positives = 150/228 (65%), Gaps = 1/228 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ + V+++ +A D VL+ GE G GKELIA +H +S R GPF+ +NC Sbjct: 11 GIVGQSAAIRNVIDRARMVARTDITVLLQGESGVGKELIAHAIHGMSPRRHGPFVIVNCG 70 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E L++SELFG E GA+TGA +R G FE ADGGT+FLDE+ P+ Q +LLRV+E Sbjct: 71 AIPEGLIESELFGAEKGAYTGAVERRKGYFEEADGGTIFLDEIGEMPLAAQVRLLRVLET 130 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE RVG S+P++ +VR++ ATN DL V G FR DL R++ ++++PPLRER DI Sbjct: 131 GEFTRVGSSRPIKTDVRIIAATNKDLAKAVRAGHFREDLYYRISTVIIEIPPLRERREDI 190 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVE 234 + + EYF + + PL E AR+ LL Y WPGN+REL+NV E Sbjct: 191 IPLFEYFLHRAAQRYGTPLR-RLDESARQLLLRYHWPGNVRELRNVAE 237 >UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLY7_DESAH Length = 463 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 123/332 (37%), Positives = 186/332 (56%), Gaps = 26/332 (7%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++GE + ++ E++ ++P+D VL+ GE GTGKEL A +H S+R F++++C+ Sbjct: 143 NIIGETSEIKKIFEKIERVSPMDSTVLLDGESGTGKELFAKAIHVRSTRASCRFLAVDCS 202 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 + +++SELFGH GAFTGA+ H G F A GTLFLDE+ + +Q KLLRV+E Sbjct: 203 TFSSTVMESELFGHVKGAFTGAETAHEGIFGAACDGTLFLDEVGNLDLDIQGKLLRVLET 262 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE + VG +Q + R+V ATN +L M+ EGTFR DL RL +++PPLRER D+ Sbjct: 263 GEYKPVGSNQIKKSQARVVAATNKNLVQMIKEGTFREDLFYRLNVFPIKIPPLRERRDDV 322 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +A +F CR+ + GF++ A L+N+ WPGN+R+LKNVVER V Sbjct: 323 PKIAYHFLRLFCRKAHKKIH-GFSDDALSALVNFDWPGNVRQLKNVVERLV--------- 372 Query: 247 LDDIIIDP--FKRRPPEDAIAVSETTSLPTLPLDLREFQMQQ-----------EKELLQL 293 I+ D R D + + + +PL L E + + E+ L Sbjct: 373 ---IMCDKEQLDHRELMDNLEIKPVALVRDIPLTLEELKRARKDFLEDSFRPVERLFLLR 429 Query: 294 SLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +L K N +AA+ +G+ F A++KK+ I Sbjct: 430 ALDDAKGNITQAAKAVGMQRSNFSAMMKKNDI 461 >UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Persephonella marina EX-H1 RepID=C0QR97_PERMH Length = 456 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 199/334 (59%), Gaps = 31/334 (9%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + L G++ + V + + +AP D VLI+GE GTGKE+ A +H LSSR PF+++NC Sbjct: 134 EGLAGKSQAIQNVKDTIKKIAPYDINVLIVGESGTGKEVAAKMIHRLSSRKNKPFVAINC 193 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+L LL+SELFG++ GAFTGA G E A+GGTLFLDE+ PM +Q KLLR +E Sbjct: 194 ASLPAELLESELFGYKKGAFTGAVSDKKGLIEEANGGTLFLDEIGEMPMPLQAKLLRFLE 253 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + +G ++ ++V+VR++ ATN +L + +G FR DL RLA ++++P LRER+ D Sbjct: 254 EQIIRPLGSTKEIKVDVRIISATNRNLEEEIKKGNFREDLYYRLATIIIKMPSLRERKED 313 Query: 186 IMLMAEYFAIQMCREIKLP-------LFPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 I L+ E Q+ +EIK+ + P F + L++Y + GNIRELKN++E++V Sbjct: 314 IPLLVE----QILKEIKMKYNKNIKRISPDFM----KYLISYDYKGNIRELKNLLEKAVI 365 Query: 239 RHGTSD------YP--LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKEL 290 + +P + + ID PED V S P +DL+E + EK L Sbjct: 366 LSDGEELNFIPAFPEKFNSLYID-----NPEDEFTVK---SFPEEGVDLKEVLSRIEKAL 417 Query: 291 LQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 + +L++ + + +AA++L LT+ +FR L K++ Sbjct: 418 IFKALEKAEGKKSKAADILRLTFREFRYRLSKYR 451 >UniRef50_A5G9N8 GAF modulated sigma-54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G9N8_GEOUR Length = 653 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 125/316 (39%), Positives = 185/316 (58%), Gaps = 10/316 (3%) Query: 18 VLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 ++E++S + P D VL+IGE GTGKE++A+ +H S R GPF+++NC A+++ L +S+ Sbjct: 334 IMERISKVIPSDINVLLIGETGTGKEIVANYIHAHSKRHAGPFVAVNCGAISKELFESKF 393 Query: 78 FGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQ 136 FG+E GAFTGA R G FE ADGGTLFLDE+ P+ +Q LLRV+E G RVG + Sbjct: 394 FGYERGAFTGADPRGRKGVFECADGGTLFLDEVGEMPLEIQAALLRVLETGRFNRVGSEK 453 Query: 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQ 196 + N R+V ATN L + GTFRADL RL +PPLRER DI ++ + + Sbjct: 454 EIATNCRIVAATNRSLSHEITRGTFRADLYYRLGVATFDIPPLRERPEDIPVLIQRTMVS 513 Query: 197 MCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFK 256 +CR+ LP +E A E L Y WPGN RE++NV+E ++ G+S D + + Sbjct: 514 LCRKHDLPP-SNISEEAMELLTGYSWPGNGREVRNVIESAMICGGSSISVQDLPMNIKYS 572 Query: 257 RRPPEDAIAVS--ETTSLPTLPLDLREFQM-----QQEKELLQLSLQQGKYNQKRAAELL 309 ++ P++AI+VS T+ D +++ Q+E L+ +L++ K + A E L Sbjct: 573 QKLPQEAISVSGAHLTAAQGRSPDSTGYRINANISQREVHLIITTLEKYK-DIALACEAL 631 Query: 310 GLTYHQFRALLKKHQI 325 G++ F K H I Sbjct: 632 GVSRATFYRKCKAHGI 647 >UniRef50_C6HYQ1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYQ1_9BACT Length = 474 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 132/313 (42%), Positives = 182/313 (58%), Gaps = 15/313 (4%) Query: 17 EVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSE 76 E+L + +A D VLI GE GTGKEL A H S R +GPF+++NC A+ ENL++SE Sbjct: 162 ELLRMLRKIAVTDVSVLITGESGTGKELFARACHQASLRKEGPFVAINCGAIPENLMESE 221 Query: 77 LFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQ 136 LFGHE GAFTGA + G+FE AD GTLFLDE+A P+ +Q KLLRV++ +ERVGG Sbjct: 222 LFGHEKGAFTGATESRGGKFEAADRGTLFLDEVAELPLDLQVKLLRVLQDKVVERVGGRS 281 Query: 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQ 196 ++++R++ ATN LP M+ +G FR DL RL+ LPPLRER D+ ++A YF + Sbjct: 282 GKKLDIRIIAATNQPLPEMMAQGRFREDLYYRLSVMSFVLPPLRERGEDVTILARYFFDR 341 Query: 197 MCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY----RHGTSDYPLD-DII 251 E + F+ + +Y WPGNIRE++N + R+V R T P D DI Sbjct: 342 FRTEYQKTQLVDFSSECLALIHSYDWPGNIREMENRIRRAVIVAVDRFIT---PADIDIT 398 Query: 252 IDPFKRRPPEDAIAVSETTSLPTLP-LDLREFQMQQEKELLQLSLQQGKYNQKRAAELLG 310 D RPPE S P P +L E + + EK +L + Q + N + A ++G Sbjct: 399 RD---LRPPEPE---RSPASAPLPPGRNLSEAREEAEKRMLTEAFQAARGNISQVARIIG 452 Query: 311 LTYHQFRALLKKH 323 + AL+KKH Sbjct: 453 TSRPTVHALIKKH 465 >UniRef50_Q01NN5 Two-component response regulator CbrB n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NN5_SOLUE Length = 481 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/324 (40%), Positives = 189/324 (58%), Gaps = 17/324 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 L+G + ++V + ++ A D VLI+GE GTGKEL+A +H S+R PF+S+NC+ Sbjct: 144 GLVGRSVPMIQVYKLIAQAARTDATVLILGESGTGKELVARAIHDFSARSGRPFLSVNCS 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 L + LL++ELFGH GAFTGA G FE ADGGTLFLDELA+ Q+ LLRV++ Sbjct: 204 GLTDTLLEAELFGHTRGAFTGANSDRAGLFEAADGGTLFLDELASTSQAFQQSLLRVLQS 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE+ RVG +Q + NVR++ A+NA L +V G+FRADL RL+ V+LPPLRER DI Sbjct: 264 GEVRRVGATQSRRFNVRVIGASNAPLRDLVAAGSFRADLFYRLSVLSVELPPLRERAGDI 323 Query: 187 MLMAEYFAIQMCREIKLPLFPG-----FTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 L+ +F +Q RE PG T A E L + +PGN+REL+N + R+V Sbjct: 324 ELLTGHF-LQRFRE------PGDAPLHLTREAAEALAAHSFPGNVRELENALRRAVALST 376 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 +D + + +R A E + P ++ E Q + LQL L++ +N Sbjct: 377 GGVVTIDCLPGEIAAKRVKPAAAERPEQRLIADRP-NMEELQ----RRYLQLILEETGWN 431 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 ++RAA +L L + L+ ++Q+ Sbjct: 432 RRRAAAVLDLDRRTIQRLIARYQL 455 >UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=B4UGS2_ANASK Length = 501 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 126/329 (38%), Positives = 190/329 (57%), Gaps = 18/329 (5%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 + D++LGE+ + ++ E + +AP VL++GE GTGKEL+A+ +H S R GPF+ + Sbjct: 162 FSDDMLGESPAMRKLREDIGKVAPTSGRVLVLGESGTGKELVAAEVHRQSRRADGPFVKV 221 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAA+ L++SELFGHE G+F+GA R G+FE A GGTLFLDE+ + Q K+LR Sbjct: 222 NCAAIPSELIESELFGHEKGSFSGAAARRRGQFEVAHGGTLFLDEIGDMGLSAQAKVLRA 281 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ GE+ RVG + V+VR++ ATN DL V GTFR DL RL + +PPLR+R Sbjct: 282 LQTGEVVRVGSEKAFTVDVRIIAATNKDLEEEVRNGTFREDLFFRLNVVPLTVPPLRDRL 341 Query: 184 SDIMLMAEYFAIQMCREIKL---PLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 D+ ++AE F RE L P+ P +R R+ +RWPGN+REL+NV ER V Sbjct: 342 DDVPVLAERFFQLATRENGLRPKPVDPAVYDRLRQ----HRWPGNVRELRNVCERMVIMS 397 Query: 241 G----TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQ 296 G +D P + + PP + +S +P L+E + E++ + L+ Sbjct: 398 GERITAADVP--ETVGPRAAPPPPPGSADLSRYGEVP-----LKELRDLVERDYILSRLE 450 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + +N +AA+ LG+ +K+H + Sbjct: 451 EHDWNITQAAQALGVERTNLHKKIKQHGL 479 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 119/321 (37%), Positives = 193/321 (60%), Gaps = 14/321 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++GE+ + V A + VLI+GE GTGKE+ A +H S+R +GPF+ +NC Sbjct: 265 ENIIGESEPIVMAKAIVEKAAHTNSNVLILGESGTGKEIFAHAIHSESNRHEGPFVKVNC 324 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHP-GRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ +LL+SELFG+EAGAFTGA+K G+FE A+ GT+FLDE+ P+ +Q KLLRVI Sbjct: 325 AAIPSDLLESELFGYEAGAFTGAKKEGKIGKFEIANEGTIFLDEIGDMPLHMQVKLLRVI 384 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+E+VGG ++N+R++ ATN +L +V EG FR DL RL +++PPLRER + Sbjct: 385 QEREVEKVGGVASKKINIRIIAATNRNLERLVEEGKFREDLYYRLNVVTIEIPPLRERGN 444 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI+L++ + ++ ++ + G ++ A + L Y W GN+REL+N++ER++ S+ Sbjct: 445 DIILISNHLIKKLSVDLDKKV-KGISKEAEQYLKIYEWKGNVRELENILERAINIMENSE 503 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 I K P E + +P L++ + EK + L+L+ N+ + Sbjct: 504 -------IIQVKDLPKEIT-----GKKVSMVPKKLQDILAESEKNAIILALRAADGNKSK 551 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA++L + ++K++I Sbjct: 552 AAKILDIGRTSLYEKIEKYKI 572 >UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 Tax=Burkholderiales RepID=B1Y713_LEPCP Length = 593 Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 115/231 (49%), Positives = 147/231 (63%), Gaps = 2/231 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++G + +V +V AP VL+ GE GTGKE IA LHYLS R PFI +NC Sbjct: 209 DNVVGVSRGMQQVFSEVHQAAPARATVLLRGESGTGKEAIARALHYLSPRKDAPFIKVNC 268 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL E+LL+SELFGHE GAFTGA GRFE+A GTLFLDE+ Q KLLRV++ Sbjct: 269 AALTESLLESELFGHERGAFTGAAGDRKGRFEQAHTGTLFLDEVGDISASFQAKLLRVLQ 328 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVGG++ ++V+VRL+CATN DL MV G +RADL R+ + LPPLRER D Sbjct: 329 EREFERVGGNRAIKVDVRLICATNRDLEKMVKRGEYRADLYYRINVVSIFLPPLRERRDD 388 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS 236 I + +F + +E + L A E L + WPGN+REL+N +ER+ Sbjct: 389 IPALVSHFVDRFNKENRRKLR--IAGDAMEVLSHCYWPGNVRELENCIERT 437 >UniRef50_A8ZZQ7 Sigma-54 factor interaction domain-containing protein n=4 Tax=Proteobacteria RepID=A8ZZQ7_DESOH Length = 684 Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 121/318 (38%), Positives = 186/318 (58%), Gaps = 10/318 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G + +V+E +A D PVL+ GE G GKE+IA+ +H+ SSR GP I +NC Sbjct: 366 DTIIGGSLGLEKVMENARLVAGQDSPVLLTGETGVGKEMIANFIHWQSSRKDGPLIKVNC 425 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ + L+DSELFGHE GAFTGA ++ GRFERA+GGT+FLDE+A P+ Q ++LRV+ Sbjct: 426 GAIPDTLVDSELFGHEKGAFTGATRQKLGRFERANGGTIFLDEIAELPLPAQVRMLRVLH 485 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 +ERVGG++ + V++R++ AT+ +L V G FR DL RL +++PPLR R D Sbjct: 486 NKIIERVGGTESIPVDIRIIAATHRNLEERVKAGRFREDLWFRLNVFPIRIPPLRSRTMD 545 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + ++++F + RE+K+ P + A L Y WPGN+REL+NV+ER + + Sbjct: 546 VPALSDHFIEKKSRELKIHPTPPLSPDAMARLTAYSWPGNVRELENVIERELILNTGGPL 605 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK-R 304 ++ P P + + L L + ++ K++L LS GK N Sbjct: 606 TFQNLSPTPTHEEPAGHDMKTEDI-------LSLDDLFVRHVKKVLVLS--NGKINGPGG 656 Query: 305 AAELLGLTYHQFRALLKK 322 AAE++ + + R +KK Sbjct: 657 AAEMMKIKPNTLRNRMKK 674 >UniRef50_A4CAI4 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Pseudoalteromonas tunicata D2 RepID=A4CAI4_9GAMM Length = 453 Score = 218 bits (555), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 122/301 (40%), Positives = 175/301 (58%), Gaps = 18/301 (5%) Query: 25 LAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGA 84 +A D +L+ GE GTGK IA +H S R PF+++N A+ ENL +SE+FGH+ GA Sbjct: 165 VAQTDANILLTGENGTGKTQIAQWIHQQSQRHSHPFVAVNMGAIPENLFESEMFGHKKGA 224 Query: 85 FTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 FT A+++ GRFE AD G+LFLDE+A P+ Q KLLRV+E E E VG S QV+VRL Sbjct: 225 FTDAKEQRIGRFELADSGSLFLDEMANIPLSQQAKLLRVLEKNEFEMVGSSHTQQVDVRL 284 Query: 145 VCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLP 204 +CA+N D +++ FR DL R+ ++P LRER DI+ +AE+F Q C + + P Sbjct: 285 ICASNGDFSKLIDNELFRQDLYYRVNTLEFRVPALRERTDDIVPLAEHFIAQHCAKYQRP 344 Query: 205 LFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFKRRPPEDAI 264 + T+ A+ L YRWPGN+REL +V+ER+V T+ ++ + P Sbjct: 345 VLT-LTDDAKHALRQYRWPGNVRELGHVMERAVLLSSTNQIAEANLNLQP---------- 393 Query: 265 AVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 T LP + L Q E+ L+ L+L++ + N AA+LLGLT L+K+ Sbjct: 394 -TIHTQRLPLMTL------AQAERTLIDLALERSQGNIPAAAKLLGLTKSSMYRRLEKYA 446 Query: 325 I 325 I Sbjct: 447 I 447 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 117/258 (45%), Positives = 165/258 (63%), Gaps = 12/258 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++ ++ +F +VL V +AP + VLI+GE GTGKEL+A +H LSSR P + +NC Sbjct: 180 DEIVTQSKAFQKVLRSVEQVAPTNTTVLILGESGTGKELLARAVHNLSSRKNKPLVKINC 239 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL L++SELFGHE GAFTGA + GRFE ADGGT+FLDE+ P+ +Q KLLRV++ Sbjct: 240 AALPATLIESELFGHEKGAFTGATAQKVGRFELADGGTIFLDEIGEMPLDLQAKLLRVLQ 299 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLA-FDVVQLPPLRERES 184 GE ERVG ++ ++VNVR++ ATN DL EG FR DL RL+ F +V L PLR R+ Sbjct: 300 EGEFERVGSTKTMKVNVRVIAATNRDLEIESAEGRFREDLYYRLSVFPIVSL-PLRTRKE 358 Query: 185 DIMLMAEYFAIQMCREI--KLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+ +F + ++ + P +TL +Y WPGNIREL+N+V+R++ Sbjct: 359 DIPLLVRHFCAKHGADMGKTIDTIPA---TVLDTLTDYHWPGNIRELENLVQRALIMS-- 413 Query: 243 SDYPLDDIIIDPFKRRPP 260 P ++I + R+ P Sbjct: 414 ---PGRTLVIGDWLRKKP 428 >UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D511_PELTS Length = 478 Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 123/336 (36%), Positives = 197/336 (58%), Gaps = 25/336 (7%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++++ + + + V + +AP+D V+I+GE G+GKEL+A +H S+R PF+ +NC Sbjct: 147 EDIITCSPNLIHVKDLAQKVAPVDVNVMILGESGSGKELLAHSIHSASTRSSKPFVCINC 206 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHP-GRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ EN+++SELFG+E GAFT A+ G+ E A+ GT+FLDE+ P +Q KLLR + Sbjct: 207 AAIPENIMESELFGYEPGAFTNAKSNGKLGKLEIANNGTVFLDEIGDMPPFMQAKLLRFL 266 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + GELE+VG +P+ VNVR++CATN ++ MV +G FRADL RL+ ++++PPLRER Sbjct: 267 QEGELEKVGSVKPVSVNVRVICATNRNIQKMVEDGIFRADLYYRLSSIILKIPPLRERPE 326 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV------- 237 DI L+ ++F + + +PL + A E L NY WPGN+REL++++E Sbjct: 327 DIELLCDHFLKSITEKWAIPL-KKIDKEALEILKNYYWPGNVRELQHLLETLCCITDGNI 385 Query: 238 --------YRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKE 289 Y G SD + + + +R I++S S + +EKE Sbjct: 386 IKAKALPSYLFGQSDSAM--LKNNELRR------ISLSNINSDGNNKYICSDVINSKEKE 437 Query: 290 LLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 LL+ L+ N+++AAE+LG+ L+K+ + Sbjct: 438 LLEEVLRNTGGNKRKAAEMLGIHRTTLYYKLRKYNM 473 >UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIK1_FIBSS Length = 509 Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/310 (40%), Positives = 182/310 (58%), Gaps = 18/310 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++G+ +V Q+ +A P LI+GE GTGK L+A +H+ S R GPF+ ++C Sbjct: 195 DNIIGKTPEMQQVYTQIDQVAKSPLPALIVGEVGTGKGLVAEAIHFRSDRNLGPFVRVHC 254 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL E++LD ELFG E GA G PGR E+A+GGTLFLDE+A +Q KLLR+++ Sbjct: 255 AALPESVLDRELFGSEKGALVGVVNEAPGRVEQAEGGTLFLDEVAELTPNLQIKLLRLLQ 314 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE+ERVG P +VNVR++CAT +L MV++GTFR DL +L + +PPLR+R +D Sbjct: 315 QGEMERVGARFPKKVNVRVICATTKNLQQMVSDGTFREDLYYQLHIVPIYVPPLRKRRTD 374 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERAR---ETLLNYRWPGNIRELKNVVERSVYRHGT 242 I+L+A+YF CR + AR E L++Y WPGN+REL+N +ER+V Sbjct: 375 IVLLADYFVDHYCRLVG----KNVRRLARGTIEMLMSYPWPGNVRELENAIERAVLL--- 427 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 ++ +I P P I ET+ P + +L+ E++++ +L+ K Sbjct: 428 ----TEEDVIYPHHFPP---TIQTDETSGTP-VSGNLKLMVEAYERDIICDALKSSKGKM 479 Query: 303 KRAAELLGLT 312 AA L T Sbjct: 480 AAAARSLSTT 489 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 128/324 (39%), Positives = 191/324 (58%), Gaps = 19/324 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++LG+ EV V+ +A VLI+GE GTGKEL+A +H S R PF+++NCA Sbjct: 147 SMLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKELVARAIHEGSQRRDNPFMAINCA 206 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E L++SELFGHE G+FTGA R G FE A+GGT+FLDE+ + +Q KLLR I+ Sbjct: 207 AIPETLIESELFGHEKGSFTGAHARELGVFEAANGGTVFLDEIGEMNVSMQAKLLRAIQE 266 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ RVGG + ++VR++ ATN +L + G+FR DL RL + LPPLRER SD+ Sbjct: 267 KEVRRVGGRVNIPLDVRIISATNKELEQEIRRGSFREDLYYRLNVIRINLPPLRERGSDV 326 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +AE+F + + + G + A + L+NY WPGN+R+L++V+ER+V +S Sbjct: 327 KTLAEFFVKKYSLATGIDV-EGISRPALKLLMNYSWPGNVRQLESVIERAVLMAESS--- 382 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSL--PTLPLDL--REFQMQQ-EKELLQLSLQQGKYN 301 +I+ P D A +TSL +P DL M+ EK L+ ++++ + Sbjct: 383 ----VIE------PGDLPAEITSTSLLAGVVPFDLPPEGIDMETLEKNLIIKAMERADWV 432 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 +AA LLG++Y + L+K I Sbjct: 433 IGKAAPLLGMSYKTLQYRLEKFAI 456 >UniRef50_B4SRV8 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=20 Tax=Gammaproteobacteria RepID=B4SRV8_STRM5 Length = 482 Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 117/230 (50%), Positives = 150/230 (65%), Gaps = 3/230 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 L+G+ + + LA VLI GE GTGKEL+A LH S R Q PF++LN A Sbjct: 148 QLVGDTPPMRALFRAIGRLAQAPLAVLITGETGTGKELVAHALHRESPRAQAPFVALNTA 207 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ LL+SELFGHEAGAFTGAQ+RH GRFE+A+GGTLFLDE+ P+ +Q +LLRV+ Sbjct: 208 AIPAELLESELFGHEAGAFTGAQRRHIGRFEQANGGTLFLDEIGDMPLPLQTRLLRVLAQ 267 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE RVGG + ++V+VR+V AT+ DL +V +G FRADLL RL +QLPPLRER DI Sbjct: 268 GEFFRVGGRELIRVDVRVVAATHQDLEGLVAQGKFRADLLHRLDVVRLQLPPLRERREDI 327 Query: 187 MLMAEYFAIQMCREIKLPLFPG-FTERARETLLNYRWPGNIRELKNVVER 235 +A F R++ P P T A + L + WPGN+REL+NV R Sbjct: 328 AQLANTFLAAAARKLDTP--PKRLTAAALQALREHDWPGNVRELENVCWR 375 >UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q500_9BACT Length = 457 Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 124/319 (38%), Positives = 186/319 (58%), Gaps = 18/319 (5%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G+ LE+LE VS ++ D V+I GE GTGKELIA +H S+R GPFI+ NC A Sbjct: 144 IIGKNKQMLEILELVSRVSKTDCNVIIYGESGTGKELIARAIHQNSNRANGPFIATNCGA 203 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E LL++ELFGH GA+T A + G F +AD G++FLDE++ M+ Q KLLRV++ Sbjct: 204 IPEGLLENELFGHIRGAYTDAHESKEGLFAQADKGSIFLDEISNTSMIFQIKLLRVLQER 263 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++ VG ++ ++NVR++ A+N DL V+EGTFR DL R+ V LPPLR+R+ DI Sbjct: 264 EIKPVGSTKNRKINVRIIAASNTDLQKAVSEGTFRDDLFYRIHVMPVYLPPLRQRKDDIP 323 Query: 188 LMAEYFAIQMCREIKL-PLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A YF + C+ +K PL GF+ A + +L Y WPGNIREL+N +E + Sbjct: 324 LLATYFITEFCKALKKDPL--GFSPAALQRMLLYDWPGNIRELRNKIEHAA--------- 372 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 I+ PED TT+ + ++ + + E+E ++ L+ N A+ Sbjct: 373 ----IVANKNNIEPEDIFPERNTTT--NVFHSYKDAKERFEREYIENLLKANNGNITNAS 426 Query: 307 ELLGLTYHQFRALLKKHQI 325 ++ L+KK+ I Sbjct: 427 KMASRYRADIYKLIKKYNI 445 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 179/305 (58%), Gaps = 10/305 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ E+ + + +A VLI GE GTGKELIA +H S R GPFI +NCA Sbjct: 167 KIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPFIKVNCA 226 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL+E +L+SELFGH GAFTGA PGRFE A GGTLFLDE+ +Q KLLRV++ Sbjct: 227 ALSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQVKLLRVLQE 286 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG++ L+V+VR++ ATN DL A ++ GTFR DL RL + LPPLRER DI Sbjct: 287 EEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLRERREDI 346 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ F + E + G ++ A+ L+N+ +PGNIREL+N++E +V Sbjct: 347 PLLISSFLSRYNAEFGKNVV-GLSQEAQNILMNHSYPGNIRELQNIIEHAVLLSTGRTIG 405 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + R P D + E +S + L E +++ ++++ + N +AA Sbjct: 406 V---------RELPRDLAPIPEESSFADVALSRSNALRTMEDVMIRKAVEKTQGNMSQAA 456 Query: 307 ELLGL 311 +LLG+ Sbjct: 457 KLLGI 461 >UniRef50_A6LFT4 Two-component system response regulator n=16 Tax=Bacteroidales RepID=A6LFT4_PARD8 Length = 455 Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 186/310 (60%), Gaps = 25/310 (8%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+GE+ + L+V + + L D +LI GE GTGK+L+A L + S R F++++ + Sbjct: 153 LIGESPAMLKVKDTIYKLVETDANILITGESGTGKDLVARLLRHYSPRRDDAFVTIDLGS 212 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E L +SELFG+E GAFT A++ PGR E A GGTLFLDE+ + +Q KLL IE Sbjct: 213 IPEQLFESELFGYEKGAFTDARRSKPGRMEMASGGTLFLDEIGNLSLPMQSKLLTAIEKR 272 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 + R+G +P+ ++VRL+CATNA+L +V EG+FR DLL R+ + +PPLRER DI+ Sbjct: 273 HITRLGAVEPISIDVRLICATNANLRQLVGEGSFRQDLLYRINTIEIAIPPLRERGEDIL 332 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY-RHGT---- 242 ++A++F R+ K + G + A L+ Y WPGN+REL++V+ER+V GT Sbjct: 333 MLADHFQRLYSRKYKKTI-KGLSREAGSKLMKYPWPGNVRELQHVLERAVILNEGTVLRP 391 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 D+PL ++R+ D P L L+ Q E+++++ +L+Q N Sbjct: 392 DDFPL---YTASYERKKELD----------PDLNLE------QAERKIIERALRQSNGNM 432 Query: 303 KRAAELLGLT 312 AAELLG+T Sbjct: 433 SYAAELLGIT 442 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 217 bits (552), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 118/319 (36%), Positives = 186/319 (58%), Gaps = 19/319 (5%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +D ++ E+ +LE V +A D VL+ GE G GKE+IA +H S R PF+++N Sbjct: 120 QDEIVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIHKHSPRSNQPFVAIN 179 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAA+ E LL++ELFGHE GAFTGA +R PG+FE A+ GT+ LDE++ +Q KLLRVI Sbjct: 180 CAAITETLLEAELFGHEKGAFTGATERKPGKFELANKGTILLDEISEMAYRLQAKLLRVI 239 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E++RVGG++P+ ++VR++ TN DL V +G FR DL R+ +++PPLRER Sbjct: 240 QEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRINVFPIRIPPLRERSD 299 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI+ +AE+F ++ K+ TE ++ LL W GN+REL+N + RS Sbjct: 300 DIIPLAEFFLKRLSN--KMSKNFTITEDMKKFLLKKSWQGNVRELENFIYRSAVLSQDGI 357 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 L + I+ F+ P A + + E+EL+ +L++ + N+ + Sbjct: 358 LRLHEDEINLFEEEKPVKAGKLKDA-----------------ERELIVDALKKTEGNRTK 400 Query: 305 AAELLGLTYHQFRALLKKH 323 AA++LG++ R + ++ Sbjct: 401 AAKILGISVRTLRNKINEY 419 >UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE8_DESAA Length = 460 Score = 217 bits (552), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 129/327 (39%), Positives = 189/327 (57%), Gaps = 27/327 (8%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D++LG++ ++ A D PVLI+GE GTGKEL A +H LS R G + +NC Sbjct: 153 DSILGDSPDIIQAKRLAEQAAGADSPVLIMGESGTGKELFAHAIHGLSQRGSGALVKVNC 212 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ LL++ELFG+E GAFTGA+K+ G+FE A GGT+FLDE+ P+ +Q K+LRV+ Sbjct: 213 AAIPGELLEAELFGYEEGAFTGARKKGKAGKFELAHGGTIFLDEIGDMPLPMQIKILRVL 272 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ERVG ++P +V+ RL+CATN DLP ++ +G FR DL R+ ++LPPLR+ Sbjct: 273 QEREVERVGSNRPKKVDFRLICATNRDLPKLMRQGLFRQDLYYRINVMTLKLPPLRDCRD 332 Query: 185 DIMLMAEYFAIQMCREIKLP-LFPGFTERARETLLNYRWPGNIRELKNVVERS--VYRHG 241 DI + ++F+ + RE P + PG +E L Y WPGN+REL+NV ER+ V R Sbjct: 333 DIFPLFQHFSRILGREKTPPKILPGV----KEILEKYSWPGNVRELRNVTERALIVCRDN 388 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTL---PLDLREFQMQQEKELLQLSLQQG 298 T P D +S+ LP + L+ Q EK++++ +L Q Sbjct: 389 TVS---------------PADLPDLSQQEVLPQVIEEKASLKALMDQAEKKIIEQALVQA 433 Query: 299 KYNQKRAAELLGLTYHQFRALLKKHQI 325 ++ AA LG+ +KKH I Sbjct: 434 S-SRAEAARNLGIHRTGLYQKMKKHGI 459 >UniRef50_A3EQP7 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3EQP7_9BACT Length = 455 Score = 217 bits (552), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 132/323 (40%), Positives = 183/323 (56%), Gaps = 15/323 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 K L+G EV EQ++ A D PVLI+GE GTGKE+ A + SSR PFI +N Sbjct: 136 KWRLVGNHPRLQEVREQIAKYAKFDSPVLILGESGTGKEVAARLIVNQSSRRDEPFIVVN 195 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A+ E+L++S FGHE G+FTGA G+FE A+GGT+FLDE+ P+ +Q KLLRVI Sbjct: 196 CGAIPEHLMESMFFGHEKGSFTGAHALQKGKFELANGGTIFLDEIGELPLNLQSKLLRVI 255 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 E GE ER+GG++ L+ VR++ ATN +L +V +GTFRADL RL V+++P LRER Sbjct: 256 ESGEFERIGGTRNLKTQVRILSATNRNLEHLVRKGTFRADLYYRLHVLVIEMPALRERIE 315 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+ EY Q+ E+ L + +L WPGNIRELKN++ER Sbjct: 316 DIPLLVEYLLQQLSAELHRTLVA--EKNLLPSLQRLEWPGNIRELKNILERLAVMSEDGV 373 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 D + +K +P + + + RE + ++EK ++ +L + K N Sbjct: 374 IREKDFFLAQWK-KPSLELMEEKKNIDFK------REIE-EREKNMILNALDKAKGNHTM 425 Query: 305 AAELLG-----LTYHQFRALLKK 322 AA LG L YH + LKK Sbjct: 426 AARFLGMKRTTLQYHLKKMDLKK 448 >UniRef50_C3QKR8 Two-component system response regulator n=19 Tax=Bacteroidetes RepID=C3QKR8_9BACE Length = 458 Score = 217 bits (552), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 122/319 (38%), Positives = 193/319 (60%), Gaps = 19/319 (5%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +++++GE++ EV ++ L+ D +LI+GE GTGK++IA ++ S R+ PF++++ Sbjct: 154 ENDIIGESSVMQEVFTTINKLSNTDANILILGENGTGKDVIARLIYRCSPRYGKPFVTID 213 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 ++ E L +SELFG E GAFT A+K GR E A GTLFLDE+ + +Q KLL I Sbjct: 214 LGSIPEQLFESELFGFEKGAFTDAKKSKAGRMEVATSGTLFLDEIGNLSLPMQSKLLTAI 273 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 E ++ R+G +Q + ++VRL+CATNAD+ MV +G FR DLL R+ + +PPLRER + Sbjct: 274 EKRQISRLGSTQTVPIDVRLICATNADIRQMVEDGNFRQDLLYRINTIEIHIPPLRERGN 333 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY-RHGTS 243 DI+L+A++F + R+ K + G T A+ LL Y WPGN+REL++ +ER+V G+ Sbjct: 334 DIILLADHFLDRYTRKYKKKIH-GLTREAKNKLLKYAWPGNVRELQHTIERAVILGDGSM 392 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 P + + K++ E+ I L+L Q E++ ++ +L+ N Sbjct: 393 LKPENFLFHTTSKQKKEEEVI------------LNLE----QLERQAIEKALRISNGNIS 436 Query: 304 RAAELLGLT-YHQFRALLK 321 RAAE LG+T + +R L K Sbjct: 437 RAAEYLGITRFALYRKLEK 455 >UniRef50_Q2RVQ1 Transcriptional regulator, NifA, Fis family n=3 Tax=Alphaproteobacteria RepID=Q2RVQ1_RHORT Length = 600 Score = 216 bits (551), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 115/232 (49%), Positives = 150/232 (64%), Gaps = 2/232 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++G +++ +++ QV +AP VL+ GE GTGKELIA +HYLS R PFI +NC Sbjct: 219 ENVVGRSSAMMKISAQVRQIAPSRATVLLRGESGTGKELIAQAIHYLSPRSDKPFIKVNC 278 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL E LL+SELFGHE GAFTGA GRFE A GGTLFLDE+ + Q KLLRV++ Sbjct: 279 AALPETLLESELFGHEKGAFTGATTERKGRFEMASGGTLFLDEIGEITVHFQAKLLRVLQ 338 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE ERVGG + ++V+VRLV ATN DL V G FRADL R+ + LP LRER D Sbjct: 339 EGEFERVGGGKTIKVDVRLVAATNKDLEDAVTRGEFRADLYYRINVVPIFLPALRERRED 398 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 + L+A++F + E L F+E A + +PGN+REL+N V R+ Sbjct: 399 VPLLAQFFLTKFNEENGRSLR--FSEGALTAMGGCNFPGNVRELENCVCRAA 448 >UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LVD4_CLOB8 Length = 689 Score = 216 bits (551), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 130/328 (39%), Positives = 190/328 (57%), Gaps = 22/328 (6%) Query: 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 +G + L+ L A D VLI GE GTGKELIA +H+ S +GPFI +NCAA+ Sbjct: 366 IGHSGKILDALATTLKAAKTDTTVLIRGESGTGKELIAEGIHFSSKNSKGPFIRVNCAAI 425 Query: 69 NENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 +NLL+SELFG+E GAFTGA KR G+FE A GT+ LDE+ +Q K+LRVI+ E Sbjct: 426 PQNLLESELFGYEKGAFTGAIKRKLGKFELAQNGTILLDEIGEMDKSMQAKVLRVIQEKE 485 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 +R+GG + +++NVR++ AT+ +L MV FR DL RL + LPPLRER+ DI Sbjct: 486 FQRIGGEETIKINVRIIAATHRNLEEMVKSMEFREDLYYRLNVIPIFLPPLRERKQDIAP 545 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLD 248 + E+F ++ + I T A E+LL Y+WPGNIREL+N+VER + + T L Sbjct: 546 LLEHFIDKIGKRIN-KRITVVTNDAMESLLEYKWPGNIRELENLVERIMALNETEVIELS 604 Query: 249 DI----------IIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQ- 297 D+ + + K + + + ET + L L+E+ EK +++ +L++ Sbjct: 605 DLPAYMRKDINTVKNAIKSKNNNEIDMLIETDEI----LPLKEY----EKIIIEKALKKY 656 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 G YN A + LGLT+ A +++ I Sbjct: 657 GSYNA--AGKALGLTHKTVAAKARQYGI 682 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 216 bits (551), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 129/327 (39%), Positives = 196/327 (59%), Gaps = 23/327 (7%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++ E+ ++ +++S +A VLI GE GTGKE +A +H S R +GPFI +NCA Sbjct: 284 DMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHAIHLGSDRGKGPFIKVNCA 343 Query: 67 ALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 ++ E+L++SE+FG+ GAFTGA K PGR ERADGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 344 SIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLDEIGEMPLALQAKLLRVLQ 403 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ER+G ++ ++VN+R++ ATN L + +G FR DL RL + LPPLRER D Sbjct: 404 DREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYYRLNVINLHLPPLRERLED 463 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV--YRHGTS 243 I + +F I +I G T A TLL Y WPGNIREL+NVVER+V R G Sbjct: 464 IEPLTHFF-ISKFNDILKANVSGITPNAMATLLQYSWPGNIRELENVVERAVNYTRSG-- 520 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQ-----EKELLQLSLQQG 298 L ++I P + +S T+L + ++ + + Q E++++ +L++ Sbjct: 521 ---LIELIHLPHQ--------IISGNTALGQV-MNKKTIRHQDRLGQIERDMIAAALEKA 568 Query: 299 KYNQKRAAELLGLTYHQFRALLKKHQI 325 N+ +AA+LL L+ + L K+ + Sbjct: 569 GGNKTKAAKLLNLSRSRLYDKLNKYDL 595 >UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4R9_DESRM Length = 568 Score = 216 bits (551), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 132/330 (40%), Positives = 193/330 (58%), Gaps = 26/330 (7%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G+ + ++LE + +A + VL+ GE GTGKEL A +H LSSR GPF+++NCAA Sbjct: 251 IIGKGPALQKILEIIKQVAKSESTVLLRGESGTGKELFAHSIHELSSRNSGPFVAINCAA 310 Query: 68 LNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 + E LL+SELFG+E G+FTGA+K PG+ E A+ GTLFLDE+ P+ +Q KLLRVI+ Sbjct: 311 IPEALLESELFGYEEGSFTGARKGGKPGKVELANNGTLFLDEIGDMPLTLQAKLLRVIQE 370 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 +E VG S PL +NVRL+ AT+ +L M+ GTFR DL RL + +PPLR+R D Sbjct: 371 KNIEPVGCSYPLPINVRLIAATHRNLEEMIGTGTFREDLFFRLNVIPIFIPPLRQRPEDT 430 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ Y+ + C +K P F + A + L+ Y WPGNIREL+N+VE V H Sbjct: 431 ELLLHYYLRKYCILLKKP-FKILSYAALQQLVKYHWPGNIRELENLVEYLVNIHN----- 484 Query: 247 LDDIIIDPFKRRPPED-AIAVSETTSLPTLPLDLREFQMQQEK--------ELLQLSLQQ 297 DII PED I + + P+ ++ + Q K EL+Q+ + Sbjct: 485 -QDII-------SPEDLPITIQQPIKEENQPIGIQPVEPQTRKSSGQRSQAELIQMLNRF 536 Query: 298 GKYN--QKRAAELLGLTYHQFRALLKKHQI 325 G + +K+AA LG++ +KK+++ Sbjct: 537 GWHTDGKKKAAAALGVSLATLYRRIKKYKL 566 >UniRef50_A0L4D4 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=cellular organisms RepID=A0L4D4_MAGSM Length = 457 Score = 216 bits (551), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 123/317 (38%), Positives = 189/317 (59%), Gaps = 10/317 (3%) Query: 14 SFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 + L++L QV ++ + VLI GE GTGKEL+A +H +S R GPF+++NCAAL ENLL Sbjct: 139 AMLKLLGQVRRVSNSNATVLIQGESGTGKELMARYVHQVSDRANGPFVAINCAALPENLL 198 Query: 74 DSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVG 133 +SELFGH GAFTGA G+F +A+GGT+FLDE++ + +Q KLLRV++ E++ VG Sbjct: 199 ESELFGHIKGAFTGATSDRKGKFLQANGGTIFLDEISEMTLNLQAKLLRVLQEKEVDPVG 258 Query: 134 GSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYF 193 G P+ ++VR++ +TN DL +G FR DL RL V + PLR+R D++L+A+ F Sbjct: 259 GKHPIALDVRVIASTNRDLKEYAADGLFREDLYYRLNVFPVFITPLRQRPKDVVLLADLF 318 Query: 194 AIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIID 253 + +E+ P F A + L+ YRWPGNIREL+NVV+R++ D++I+ Sbjct: 319 RQRFIKELGRNDIP-FDAAAMDALVRYRWPGNIRELENVVQRALLIAEDDAVSSHDLMIE 377 Query: 254 PFKRRPPEDAIAVSETTSLPTLPLDLREFQM-------QQEKELLQLSLQQGKYNQKRAA 306 P ++ + + LD M + E+ L++ +L + N+ RAA Sbjct: 378 VSGSAAPSPSM--TRDADEMGMALDGDHIHMPVGTTVREMEEILIRRTLDEVDGNRTRAA 435 Query: 307 ELLGLTYHQFRALLKKH 323 E+LG++ R L ++ Sbjct: 436 EILGISIRTLRNKLNEY 452 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 216 bits (551), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 125/318 (39%), Positives = 184/318 (57%), Gaps = 10/318 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + + E V A D PV I GE GTGKEL+A +H LS R + P+I +NCAA Sbjct: 149 IVGHSRQMKNLFELVEKAAQSDFPVFICGESGTGKELVAQAIHNLSPRAEQPYIQVNCAA 208 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 LNE+LL+SELFGH GAFTGA + GRFE A G +FLDE+ PM +Q KLLRV+E Sbjct: 209 LNESLLESELFGHVKGAFTGALQHRKGRFEAAHKGDIFLDEIGDLPMAMQVKLLRVLETK 268 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ERVG ++ + V++R + ATN +LP ++ G FR DL R+ + LPPLRER+ D+ Sbjct: 269 TFERVGDNRTISVDLRFITATNKNLPDLIARGGFREDLFYRINVIPIHLPPLRERKEDVP 328 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + ++F ++ R+ K + G + A + Y WPGN+RELK+ +E S Y D Sbjct: 329 HLVDFFIKRLSRKNKKNI-QGLSPEAMRIFMQYSWPGNVRELKSALEYS-YVLAEGDRIR 386 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 + + + K D + LP P + Q +Q++EL++ +L+Q N+ +AA Sbjct: 387 SENLPEYLK-----DGGNDFQAVDLPPAPAE--NLQQRQKQELIE-ALKQSSGNKSQAAR 438 Query: 308 LLGLTYHQFRALLKKHQI 325 LLG+ ++K+ I Sbjct: 439 LLGINRVTVLNRMRKYGI 456 >UniRef50_D0Z425 Formate hydrogenlyase transcriptional activator n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z425_LISDA Length = 739 Score = 216 bits (551), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 112/248 (45%), Positives = 162/248 (65%), Gaps = 3/248 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+++ ++ + +VLE+V+ +A D VLI+GE GTGKELIA +H +S R + + +NC Sbjct: 380 DDIISQSEAMNQVLEKVAMVASCDSTVLILGESGTGKELIARAIHKMSLRSKTRMVKMNC 439 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ L +SELFGHE GAFTGA + GRFE+A GTLFLDE+ P+ +Q KLLR ++ Sbjct: 440 AAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQPKLLRALQ 499 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ERVG +Q + V+VR+V ATN DL AMV+ FR DL RL +++PPLR+R D Sbjct: 500 ENEIERVGKNQLISVDVRIVVATNVDLLAMVDAKQFRNDLYYRLNVFPIEVPPLRQRAED 559 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY--RHGTS 243 I L+ ++FA Q+ +++ + E + + WPGN+REL N VERSV R Sbjct: 560 IPLLVKHFARQLAQKMGKKI-TAIAASDLELMQRFSWPGNVRELHNFVERSVILTRGHVL 618 Query: 244 DYPLDDII 251 + P+D++I Sbjct: 619 NIPVDELI 626 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 216 bits (551), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 132/327 (40%), Positives = 189/327 (57%), Gaps = 11/327 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G+ +VLE+V +A D VLI GE GTGKE+IA+ +H S R I ++C Sbjct: 141 DGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEVIANAIHRNSPRCGQALIKVSC 200 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL E LL++ELFGHE GAFTGA K+ GRFE A GTLFLDE+ MVQ KLLRV++ Sbjct: 201 AALPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTLFLDEIGEIAPMVQVKLLRVLQ 260 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ERVGG++ + +VRLVCAT +L V G FR DL RL V LPPLRER+ D Sbjct: 261 EKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFREDLFYRLNVVQVALPPLRERKED 320 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD- 244 I+++AE+ + ++ + GF+ AR+ LL+Y +PGN+REL+N +ER+V D Sbjct: 321 ILVLAEHLLQRSTSRVQ-RVMKGFSVAARDVLLHYSFPGNVRELENAIERAVALAQEGDE 379 Query: 245 ---YPLDDIIIDPFKRRPPEDAI-----AVSETTSLPTLPLDLREFQMQQEKELLQLSLQ 296 + L + PF P + VS T+ L E + + E+E + L+ Sbjct: 380 IQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSNVTNARQTG-TLAEVRERCEREYILAVLE 438 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKH 323 + +++ A++ LGL+ K++ Sbjct: 439 REGWSRTAASKSLGLSRKALWEKCKRY 465 >UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH02_SYNFM Length = 510 Score = 216 bits (550), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 128/315 (40%), Positives = 186/315 (59%), Gaps = 16/315 (5%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + S L V + +AP VL++GE GTGK L+A LH LS R PF+ +NCA+ Sbjct: 198 MVGRSPSMLVVQRHIEKVAPSKASVLLLGESGTGKTLVAQMLHELSIRSSAPFVKINCAS 257 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L ENLL+SELFG+E GAFTGA + PGR E A+GGT+FLDE+ +Q KLLR ++ Sbjct: 258 LPENLLESELFGYEKGAFTGAVRSKPGRIEEAEGGTVFLDEVGELTPALQAKLLRFLQDK 317 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ER+G ++ V+VR++ ATN DL A+V EGTFR DL RL +Q+PPLR R+ DI Sbjct: 318 EFERLGSTRTRVVDVRVLAATNRDLAAVVAEGTFREDLYYRLNVFPIQIPPLRARKEDIP 377 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + +F ++ RE + G T A L Y WPGN+RE++N+VER V + + Sbjct: 378 DLLHHFLDRISREYGRRI--GITNAAMALLAGYDWPGNVREMENLVERMVIMADEDEIGV 435 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 + ++ PF +SE + + L + + KE+L +L++ +NQ R A+ Sbjct: 436 N--VLPPF----------LSEQMT-GSGGETLSRIEKMERKEILA-ALERNGWNQTRTAK 481 Query: 308 LLGLTYHQFRALLKK 322 LG+T Q ++K Sbjct: 482 ELGITLRQIGYRVRK 496 >UniRef50_Q1MPA8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Desulfovibrionaceae RepID=Q1MPA8_LAWIP Length = 492 Score = 216 bits (550), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 130/350 (37%), Positives = 195/350 (55%), Gaps = 37/350 (10%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + VL +AP VLI GE GTGKE+ A LH S+R +GPFI++NCA Sbjct: 142 TIIGSNPAIRRVLALAKQVAPSKASVLISGESGTGKEMFARTLHAWSNRSKGPFIAVNCA 201 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E+LL+SELFGHE G+FTGA R G+FE A GGT+ LDE++ + +Q KLLRV++ Sbjct: 202 ALPEHLLESELFGHEKGSFTGAIARKLGKFELASGGTILLDEISEMDLALQSKLLRVLQE 261 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE++RVGG++ ++V+VR++ TN D+ V+EG FR DL RL ++LP L ER DI Sbjct: 262 GEIDRVGGTETIKVDVRVLATTNRDMEKWVDEGKFRQDLFFRLNVIPLRLPSLAERGDDI 321 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG----- 241 + +A +F +E L ++ A L N+ WPGN+REL+N++ER+V G Sbjct: 322 LELANFFINMYTKEYHLKP-TKLSQEATTWLKNHNWPGNVRELQNLMERAVLLAGGGLIT 380 Query: 242 -------TSDYPL-DDIIIDPFKRRPPEDAIAVSETTS-------------------LPT 274 T ++PL D++ ++ + I +S TT P Sbjct: 381 PNHFLLETEEWPLFDEVPLEQQTESIIPEVITISNTTQALQTHPQSKSTTATTTSSVFPN 440 Query: 275 LPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 + L E E+ ++ L+ N+ +AAELLG++ R L +++ Sbjct: 441 AVIPLHEM----ERLMIIKGLEATSGNRTQAAELLGISIRTLRNKLNEYK 486 >UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C7PBZ0_CHIPD Length = 481 Score = 216 bits (550), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 109/232 (46%), Positives = 154/232 (66%), Gaps = 1/232 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G + V E + +APLD VL++GE GTGKE +A+ +H+LS R PF+ +NC Sbjct: 167 EGIIGSSIPMQRVFELIRQVAPLDTSVLVLGETGTGKEGVANCIHHLSPRKAKPFVKVNC 226 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL +L++SELFGHE GAFTGA ++ G+FERADGGT+FLDE+ P +Q KLLRV++ Sbjct: 227 AALPTHLIESELFGHEKGAFTGALEKRIGKFERADGGTIFLDEIGDMPADLQVKLLRVLQ 286 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ER+GG+ P++VNVR++ ATN +L + EG FR DL RL + L LRER D Sbjct: 287 EKEIERIGGNGPIKVNVRIIAATNRNLEKEIAEGRFRLDLYYRLHVFPIMLSALRERRDD 346 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 I L+ +F I++ A L++Y WPGN+REL+N++ERSV Sbjct: 347 IPLLIAHF-IRLYASATGKGVSDIAPAALRQLMDYAWPGNVRELQNLIERSV 397 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 216 bits (550), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 124/328 (37%), Positives = 190/328 (57%), Gaps = 18/328 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ-GPFISLNC 65 N+L + +++ E + H+A VLI GE GTGKE IA +H S+ ++ G F+++NC Sbjct: 148 NVLSRSPKMVDLFELIGHVAGTASTVLIRGETGTGKEQIARAIHQASANYRTGEFVAVNC 207 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 ALNENLL+SELFGHE G++TGA ++ GRFE A GTLFLDE+ PM +Q KLLRV++ Sbjct: 208 GALNENLLESELFGHEKGSYTGADRKRIGRFELAHKGTLFLDEIGDVPMSMQVKLLRVLQ 267 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ERVGG++P++++VR+V AT+ D+ +V +G FR DL RL + +PPLRER D Sbjct: 268 ERRFERVGGAEPIEIDVRVVAATHQDMEKLVKDGKFREDLYYRLNVVRIDIPPLRERTED 327 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY--RHG-- 241 I ++ +F + R + P P + A + L WPGN+R+L+N +ER+ R G Sbjct: 328 IPVLVSHFCQKFVRVGQKP--PTISPEALDLLTKCPWPGNVRQLENAIERACVTARDGVI 385 Query: 242 -TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLP---TLPLDLREFQMQQEKELLQLSLQQ 297 T D P P R PE + A + LP L E E+ ++ +L++ Sbjct: 386 RTKDLP-------PEVGRRPESSAAGKHPFHVDLNRKLPDQLSELTAAFEERYIRRALKR 438 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 + + + A++ GL+ + +++I Sbjct: 439 SRGHVGKCAKITGLSRRSITDKIAQYKI 466 >UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XH6_DESDG Length = 589 Score = 216 bits (550), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 132/319 (41%), Positives = 181/319 (56%), Gaps = 8/319 (2%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + +++G ++ V V LA D VL+ GE GTGKEL+A LH+ +R QGPF+ +N Sbjct: 273 RRSMIGRSSVMRGVFRLVESLADTDTTVLVTGESGTGKELVADALHHSGARAQGPFVKVN 332 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C+AL+E LL+SELFGH GAFTGA K GR + A GGTLFLDE+ VQ KLLRV+ Sbjct: 333 CSALSETLLESELFGHVRGAFTGATKDRTGRIQMAHGGTLFLDEIGDISPSVQLKLLRVL 392 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ERVG +P++V+VR+V ATN L A+V G FR DL RL V LP LRER Sbjct: 393 QEKEIERVGEGRPVKVDVRVVAATNKSLRALVARGKFREDLYYRLKVVEVHLPALRERRE 452 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+AE+F I+ E G A++ L+ Y WPGN+REL++ VE + G + Sbjct: 453 DIPLLAEHF-IEEFNEHFHRRVSGLDSSAQQLLVQYDWPGNVRELRHAVEHAFIMAGGNV 511 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 P + P + A S T Q + K+ L +L++ N+ + Sbjct: 512 IPAAAL---PAELMQSGRFSAQSAGTGALRHDAPDAAAQGAEWKQRLSAALKETGGNKAK 568 Query: 305 AAELLGLT----YHQFRAL 319 AA LLG++ Y + R L Sbjct: 569 AARLLGISRQTMYRRLREL 587 >UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDW1_DESAA Length = 477 Score = 216 bits (550), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 129/334 (38%), Positives = 190/334 (56%), Gaps = 23/334 (6%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G++ V+ ++ AP D VLI GE GTGKE+IA +H S R F +++C A Sbjct: 146 LVGDSPQMQGVIRMLAKAAPTDTNVLIYGESGTGKEVIARAIHANSRRKGEVFFAVDCGA 205 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L ENLL SELFGH GAFTGA K G FE ADGGT+FLDE+++ M +Q LLR +E Sbjct: 206 LAENLLQSELFGHTKGAFTGAVKDKKGIFELADGGTVFLDEVSSISMSIQSNLLRFLETR 265 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E+ VGG+ P++V+VRLV ATN DL MV++G R D R+ + PPLRER +DI+ Sbjct: 266 EVLPVGGAAPVKVDVRLVFATNQDLKEMVSQGKLREDFYYRIMVYPIFTPPLRERRADIL 325 Query: 188 LMA----EYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 +A + F+ M ++I+ F+ A E LL++ WPGN+R+L+N +ER+V Sbjct: 326 PIAYHFLDLFSHSMSKDIR-----SFSPDAAEILLDHSWPGNVRQLRNAIERAVILCEGR 380 Query: 244 DYPLDDIIIDPFKRRPPED----AIAVSETTSLPTLPLDLREFQM--------QQEKELL 291 + ++ + +P E+ A ++ +P +L+E + Q E++ L Sbjct: 381 TITARE--LEHLQDKPGEEHHQAAYTITHDYQVPANAEELKEAKKIIRQLAVEQVERDFL 438 Query: 292 QLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +L+ N RAAE G+ F L+KKH + Sbjct: 439 TQALENADGNITRAAEQAGMQRSNFSNLMKKHGV 472 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 216 bits (550), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 125/323 (38%), Positives = 186/323 (57%), Gaps = 16/323 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 K N++ + + L++LE +AP D VLI GE GTGKEL A +H S R +GPF+++N Sbjct: 138 KVNIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFARYIHLNSLRKKGPFLAVN 197 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A +E LL +ELFGHE GAFTGA G E A G+LFLDE+ + +Q KLLRVI Sbjct: 198 CGAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLDEITEMSLTMQAKLLRVI 257 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E R+G ++P++V+VR + ATN D+ V G FR DL RL +++PPLRER+ Sbjct: 258 QEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYRLNVVNIEIPPLRERKD 317 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+ YF+ + +K + G +E A L+NY +PGN+REL+N++ER+V +S Sbjct: 318 DIPLLVAYFSKKYSLLMKKEI-TGVSEEAINLLVNYEYPGNVRELENIIERAVVLCNSSQ 376 Query: 245 YPLDDIIIDPFKRRPPED--AIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 ++ + P+D + + T + L E EKE ++ L++ N+ Sbjct: 377 IDVEHL---------PQDLKELKIEVFTKKEGKFMSLEEL----EKEYIKWILREVGNNK 423 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AA++LG+ LK + I Sbjct: 424 TVAAQILGIDRVSLWRKLKNYGI 446 >UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=A1VHE0_DESVV Length = 454 Score = 216 bits (550), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 132/322 (40%), Positives = 187/322 (58%), Gaps = 13/322 (4%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 +GE+ + L+V +++ LA PVL++G G+GKEL+A LH S R PFI +NCAA Sbjct: 140 FIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVAGALHRRSKRRDRPFIKINCAA 199 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E LL+SELFGHE GAFTGAQ+ G+FE ADGGTLF DE+ P+ +Q KLLRV+E Sbjct: 200 LPEQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLFFDEVGEMPLPLQAKLLRVLEDQ 259 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E+ VGG+ P +VNVR V AT +L + +G FR DL R+ V LPPLRER SD+ Sbjct: 260 EVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLYYRINVVPVTLPPLRERGSDVA 319 Query: 188 LMAEYFAIQMC----REIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 L+ E F + C R+ L +E+AR LL Y +PGN+REL+N VE +V Sbjct: 320 LLTERFLRRFCALHERQATL------SEQARLALLAYDYPGNVRELRNAVEHAVLLCTEG 373 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + + + P + R ++ + P L E + E+ + +L++ + Sbjct: 374 EIHVGHL---PERIRAATQSMPPACDDDAGDTPASLAEGVARFERRRIMEALERTGGRKI 430 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA+LLG++ Q LK+ I Sbjct: 431 QAADLLGISRKQLWLKLKELSI 452 >UniRef50_Q1IMW7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMW7_ACIBL Length = 463 Score = 216 bits (550), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 130/299 (43%), Positives = 180/299 (60%), Gaps = 13/299 (4%) Query: 18 VLEQVSHLAPLDKP-VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSE 76 +LEQ A DK +LI GE GTGKE++A +HY S R Q P +SLNCAAL + LL+SE Sbjct: 153 MLEQAKKAAESDKTTILIQGESGTGKEVMAKTIHYYSPRAQQPLVSLNCAALPDTLLESE 212 Query: 77 LFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQ 136 LFG+E GA+T A++R G E+A GTLFLDE+ VQ KLLRV+E G R+GG++ Sbjct: 213 LFGYEPGAYTDARRRKEGLLEKAHAGTLFLDEIGNMSFSVQAKLLRVLEEGNFMRLGGTR 272 Query: 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQ 196 +QV+VR++ ATN L V+ G FR DL RL + +PPLRER+ D + +A + Sbjct: 273 TIQVDVRIIAATNKVLKDAVSRGEFRDDLFYRLNVMPLFIPPLRERKEDTVPIALDMMKR 332 Query: 197 MCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFK 256 +++K F G T A E L Y WPGNIREL+NV+ER++ D LDD+ P + Sbjct: 333 FNKDLK-KNFTGMTPEAAECLRAYTWPGNIRELRNVMERTMILATHGDISLDDL---PHE 388 Query: 257 RR----PPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGL 311 R PPE + E +SL T + L E +++ +L++ G N+ AA +LG+ Sbjct: 389 IREFDAPPETSSGEVEISSLTTPFVTLEEL---EDRYILEVLTATGN-NKTHAARILGI 443 >UniRef50_Q2INT5 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Deltaproteobacteria RepID=Q2INT5_ANADE Length = 476 Score = 216 bits (550), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 124/230 (53%), Positives = 154/230 (66%), Gaps = 1/230 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 LLG+A +F VLE + AP VL++GE GTGKEL A +H LS R GPF+ ++CAA Sbjct: 145 LLGDAPAFRAVLEILRQAAPTQATVLLLGESGTGKELAARLVHDLSPRAAGPFVPIHCAA 204 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E LL+SELFGHE GAFTGA R GRFERA GGTLFLDE+ VQ KLLR ++ G Sbjct: 205 IPETLLESELFGHEKGAFTGAVARKDGRFERAHGGTLFLDEIGEMSPAVQVKLLRFLQDG 264 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 LERVGG++P++V+VR+V ATN DL A V G FR DL RL V+LPPLRER D+ Sbjct: 265 VLERVGGNEPVRVDVRVVAATNKDLAAEVKAGRFREDLFYRLDVVRVRLPPLRERREDVP 324 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 L+A F +M P+ GFT A L Y WPGN+REL++ +ER+V Sbjct: 325 LLAMAFLRRMAERNGKPI-SGFTPGAMAALERYAWPGNVRELQHAIERAV 373 >UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Planctomycetaceae RepID=D2QZ64_9PLAN Length = 677 Score = 216 bits (550), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 137/328 (41%), Positives = 189/328 (57%), Gaps = 28/328 (8%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G + V Q++ AP VLI GE G GKEL+A +HY S R +GPF+ LNCAA Sbjct: 359 LVGSSEVLSSVQRQIARAAPSRATVLIRGESGVGKELVARAVHYSSPRKRGPFVCLNCAA 418 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L+E+LL+SELFGHE GAFTGA R G+FE A GTL LDE+ +Q K LRV+E Sbjct: 419 LSESLLESELFGHEKGAFTGATDRKIGKFESAHQGTLMLDEIGEMSPSIQAKFLRVLEGH 478 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ERVGGSQP++V+VR++ ATN DL V EG FR DL RL +Q+PPLR+R DI+ Sbjct: 479 PFERVGGSQPIKVDVRVIAATNRDLEKAVAEGAFRRDLYFRLNVVEIQVPPLRKRPEDII 538 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +A +F + E L GF+ A E L YRWPGN+RELKNV+ER+V Sbjct: 539 ELAHFFLQRFNAETGRKLR-GFSPAATERLQQYRWPGNVRELKNVIERAVV------LSR 591 Query: 248 DDIIIDPFKRRPPED-----AIAVSETTSLPT-----LPLDLREFQMQQEKELLQLSLQQ 297 D++ PED SE+ P+ +P+ L + EK + +L+ Sbjct: 592 GDVV-------EPEDLHLSNLATASESGDNPSPKTSFVPMSLDDI----EKRHILATLKA 640 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 +++ RAA +LG+ ++++++ Sbjct: 641 TNWHKSRAAAILGVERSTLDRKIRRYEL 668 >UniRef50_C6JPX9 PAS modulated sigma54 specific transcriptional regulator n=1 Tax=Fusobacterium varium ATCC 27725 RepID=C6JPX9_FUSVA Length = 467 Score = 216 bits (550), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 195/325 (60%), Gaps = 13/325 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G++N+ +++ + A D PVLI GE GTGKE+IA+ H L R+ F+ +NC Sbjct: 149 DQIIGKSNAMMQIKATIEKYADTDIPVLITGETGTGKEVIANAFHQLCRRYNENFVKINC 208 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHP-GRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ + LL+SELFG+E GAF+GA K G+F+ AD GT+ LDE+ P+++Q KLLR++ Sbjct: 209 AAIPKELLESELFGYEPGAFSGALKNGKIGKFQLADNGTILLDEIGEMPLILQSKLLRIL 268 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+E++GG +P++++ R++ TN ++ A+VNE FR DL R+ +++PPLRER Sbjct: 269 QEKEIEKIGGLKPIKISTRIIGCTNKNMIALVNENKFRKDLYYRMNALEIKIPPLRERVE 328 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVER-SVYRH-GT 242 DI L+ ++F ++ E + ++ E ++Y WPGNIREL++V+ R S+ H GT Sbjct: 329 DIPLLCDFFRKKINDEYGYAI-SEISKEVIEKFMDYSWPGNIRELQHVMYRASILAHYGT 387 Query: 243 SDYPLDDIIIDPFKRRPPEDAI--AVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 D ++ + E + SE TS L++ M EK + +L+ K Sbjct: 388 LTLNDFDFFLENLQNSDLEKISFDSFSEETS-------LKKLTMSNEKNAIIEALKITKG 440 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N+ +AA+LL + + A +KK I Sbjct: 441 NKSKAAKLLKIDRSRLYAKMKKLDI 465 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 127/301 (42%), Positives = 180/301 (59%), Gaps = 24/301 (7%) Query: 21 QVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH 80 QV + + VLI GE GTGKEL A +H S+R + PFI +NC+A+ L ++ELFG+ Sbjct: 390 QVLQVGRSNSTVLITGESGTGKELFAHSIHNASNRRKEPFIKVNCSAIPGELAEAELFGY 449 Query: 81 EAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQ 139 E GAFTGA+K+ PG+FE AD GT+FLDE+ P+ +Q KLLRVI+ E+ERVGG + + Sbjct: 450 EDGAFTGARKQGKPGKFELADCGTIFLDEIGDMPLALQSKLLRVIQDKEIERVGGVKARK 509 Query: 140 VNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFA----I 195 V+VR++ ATN DL MV EGTFR DL R+ +++PPLR+R DI L+A+ F Sbjct: 510 VDVRIIAATNRDLKRMVTEGTFREDLYFRINVVELKIPPLRDRRKDIPLLADTFIRKYNN 569 Query: 196 QMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPF 255 Q+ R ++ G TE A E L Y WPGNIREL+N++ER + + L D + + Sbjct: 570 QLGRRVE-----GITEAALEALTRYDWPGNIRELENIIERMLNYRESGLIELQD-LPEEI 623 Query: 256 KRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQ 315 RP +A T +L + E E +Q +L + N+ +AA LLG++ + Sbjct: 624 VGRP--GGMAAKATQTLAVM-----------EMETIQAALAEAGGNKSKAARLLGISRSK 670 Query: 316 F 316 Sbjct: 671 L 671 >UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3 Tax=Geobacillus RepID=A4IRU9_GEOTN Length = 486 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 106/228 (46%), Positives = 150/228 (65%), Gaps = 2/228 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ +V+ ++ +APLD VLI GE G GKE+IA+ + SSR FI +NCAA Sbjct: 172 IIGDSEEIRDVIYLINKIAPLDVTVLITGESGVGKEVIANEIFQKSSRKNKQFIKVNCAA 231 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + NLL+SELFG+E GAFTGA K G F+ ADGGT+FLDE+ P+ +Q KLLR ++ Sbjct: 232 IPTNLLESELFGYEKGAFTGADKAKKGLFQLADGGTIFLDEIGDIPLEIQPKLLRALQQK 291 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E+ VGG+Q +++VR++ ATN DL V EG FR DL RL +++PPLRER+ DI Sbjct: 292 EVVPVGGTQIQKLDVRIIAATNKDLSQQVKEGKFRKDLYYRLNVFPIEIPPLRERKRDIY 351 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVER 235 + EYF Q ++ + + A L+NY WPGN+REL+N++ER Sbjct: 352 ALGEYFLKQYNKKYGKSVV--LSSEAYSLLMNYDWPGNVRELQNIIER 397 >UniRef50_Q0F179 Putative transcriptional regulator, Fis family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F179_9PROT Length = 465 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/330 (40%), Positives = 189/330 (57%), Gaps = 13/330 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + + ++ + +A D VLI GE GTGKE++A LH S R F+++N AA Sbjct: 131 IIGRSPAMQQMFRTLGRVASSDLTVLITGESGTGKEMVAKTLHERSQRADKAFVAINTAA 190 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + +LL+SELFGHE G+FTGA K GRF +ADGGTLFLDE+ P+ +Q KLLRV+E G Sbjct: 191 IPADLLESELFGHEKGSFTGADKMREGRFVQADGGTLFLDEIGDMPLALQAKLLRVLEEG 250 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ++RVGGS+ VNVRL+ AT+ +L + +G FR DL RL VQ+PPLR+R DI Sbjct: 251 RVQRVGGSESKVVNVRLLAATHQNLNTKIAKGEFREDLYYRLNVIPVQIPPLRDRRDDIP 310 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +A + Q +E+ + P + A + L + WPGN+RELKNV+ R + L Sbjct: 311 ELANFLLEQAVKELGMEQ-PILLDDAMDLLSRHDWPGNVRELKNVMRRLAVLTPGATITL 369 Query: 248 DDII-----IDPFKRRPPEDAIAVSETTSLPTLPL------DLREFQMQQ-EKELLQLSL 295 D+ +D A AV+ T L +L + ++Q E LL L+L Sbjct: 370 TDVALALGNVDNHTGEEETLADAVTRCTRQYLHQLGYASATNLHQHLLEQIEPPLLVLAL 429 Query: 296 QQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +Q NQ + +E+LGL + R LL K+ I Sbjct: 430 EQCNGNQLKVSEMLGLNRNTVRKLLNKYNI 459 >UniRef50_D0KWC0 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Chromatiales RepID=D0KWC0_HALNC Length = 539 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/335 (39%), Positives = 188/335 (56%), Gaps = 18/335 (5%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 E +LGE+ + L Q H++P VL+ GE GTGKE A +H S GPF+ Sbjct: 203 TEGTHGILGESPALRHALRQALHVSPTQATVLLTGESGTGKERFARLVHITSQLRDGPFM 262 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 ++NCAA+ E LL+SELFGHE GAFTGA + G E A+ GTLFLDE+ + +Q KLL Sbjct: 263 AINCAAIPEALLESELFGHEKGAFTGAVVKKQGIIELANNGTLFLDEIGDLALDLQSKLL 322 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 V+E ++RVGG+Q + VNVR++ AT+ +L VNEG FR DL RL + LPPLRE Sbjct: 323 HVLEKRAIKRVGGTQDIPVNVRIIAATHKNLQKAVNEGQFRIDLFYRLNVFPIHLPPLRE 382 Query: 182 RESDIMLMAEYFAIQMCREI-KLPLF-PGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 R D+ +A +F + E + +F PG ER L Y WPGNIR+L+N+V+R+V Sbjct: 383 RGGDVSHLARHFLQRANHEFDRNTVFGPGVLER----LDGYNWPGNIRQLENIVKRAVLI 438 Query: 240 HGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSL-----PTLPLDLRE-------FQMQQE 287 + +DD+I+ + + T S+ P+LP + + E Sbjct: 439 AQNREITIDDVILILQHESHIGEHLEAGSTKSVAPIEPPSLPSKSHQPTQRGYGWVRADE 498 Query: 288 KELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKK 322 + L +L+Q N+ RAA LG+T QFR L++ Sbjct: 499 TQGLLDALRQTGGNKTRAAMTLGMTPRQFRYRLER 533 >UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=B4ULA9_ANASK Length = 459 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/319 (40%), Positives = 181/319 (56%), Gaps = 11/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ + +++ + +AP D P+LI GE GTGK+L+A H LSSR QGP+++LN + Sbjct: 145 GIVGKSQAMKDLVSMLERIAPSDVPILIEGESGTGKDLLARAAHALSSRAQGPYVALNMS 204 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENL +SELFGHE GAFTGA + G F A+GGTLFLDEL P +Q KLLRV++ Sbjct: 205 AIPENLAESELFGHEKGAFTGADQPRAGFFAEAEGGTLFLDELGLLPPALQPKLLRVLQD 264 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE VG +P + NVR+V ATN DL V EG FR DL RL ++LPPLRER DI Sbjct: 265 GEFIPVGSRKPRKANVRVVAATNEDLQRRVKEGKFREDLWFRLRVVPLRLPPLRERREDI 324 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ E+ + + P E R LL++ WPGNIREL++ +ER + Sbjct: 325 PLLVEHLVQKHALRLSRPPLQPDAEAMR-ALLDHPWPGNIRELEHAIERGLLLARGDAIT 383 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 L D+ P + PP +A ++ R + E+ L+ L++ RAA Sbjct: 384 LADL---PPELTPPAEAAGGADEGR-------YRRARDAWERRFLEDVLREAGGQVARAA 433 Query: 307 ELLGLTYHQFRALLKKHQI 325 EL GL F L +H + Sbjct: 434 ELSGLHRSTFYEKLARHGL 452 >UniRef50_UPI00016A7B7E two component, sigma54 specific, transcriptional regulator, Fis family protein n=3 Tax=pseudomallei group RepID=UPI00016A7B7E Length = 470 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 122/317 (38%), Positives = 183/317 (57%), Gaps = 5/317 (1%) Query: 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 +G + + ++ ++ +A VLI+GE G GKEL+A +H S R PF++++C A+ Sbjct: 148 MGPSEAVARLVARIGLVAKSTFSVLIVGESGAGKELVARAIHRGSGRRAAPFVAIDCGAI 207 Query: 69 NENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 E LL+SEL+G+E GAFTGA PG+F A+ GTLFLDE+A P+ Q KLLRVI+ Sbjct: 208 PEQLLESELYGYEKGAFTGAGAAKPGKFSAANRGTLFLDEIANLPLASQAKLLRVIQERT 267 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 L RVGG+ PL ++VR+V A N D+ EG FR+DL RL+ V+ +P LRER DI+ Sbjct: 268 LYRVGGNTPLPLDVRIVAAANEDVEQKALEGDFRSDLFFRLSEFVIHVPALRERRDDILY 327 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLD 248 +A++FA Q C E+ P F + E LLN+ WPGN+R+L+N + ++V G P Sbjct: 328 LAQHFATQTCTELDKPAVT-FADATCERLLNHPWPGNVRQLRNTIRQAVLVAGDIVQPAH 386 Query: 249 DIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAEL 308 I + K P E SL + +R E+ ++ LQ N+ +AA + Sbjct: 387 LNIAESGKHAAPAPEFG-WEGLSLKEV---VRRNIADIERRVIDQVLQATHGNKAQAARV 442 Query: 309 LGLTYHQFRALLKKHQI 325 L + Y + +K+++I Sbjct: 443 LQVDYKTIHSKVKEYRI 459 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 122/322 (37%), Positives = 184/322 (57%), Gaps = 9/322 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N +G++ V E + +A D VLI GE GTGKELIA +HY S R P + +NC Sbjct: 146 ENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELIARAIHYNSPRRDDPMVIINC 205 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ E LL+SELFGHE GAFTGA K GRFE A+GGT+FLDE+ +Q KLLRVI+ Sbjct: 206 GAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQ 265 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ER+G ++ + V++R++ ATN DL V + FR DL RL +++PPLR+R+SD Sbjct: 266 EQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYYRLNVIPIEVPPLRDRKSD 325 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ ++F ++ E + P+ ++ A L+ + WPGN+REL+NVVER + Sbjct: 326 IPLLIDFFINKLAAEKERPV-KRISQAAMNALMGHHWPGNVRELENVVERVLILSSGDTI 384 Query: 246 PLDDI--IIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 +D+ I + PE + LP+ + + EK L+ +L++ + + Sbjct: 385 DKEDLPATILGLDSKEPEAGL------KLPSGGIRFDHAVEEYEKNLIVQALEEANWVKT 438 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA+LL + +K+ I Sbjct: 439 QAAKLLHINRTTLVEKMKRKNI 460 >UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pilR n=65 Tax=Proteobacteria RepID=PILR_PSEAE Length = 445 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 131/325 (40%), Positives = 189/325 (58%), Gaps = 10/325 (3%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A + LLGE+ + Q+ LA PV I GE G+GKEL+A +H R + PF+ Sbjct: 129 APVDNRLLGESPPMRALRNQIGKLARSQAPVYISGESGSGKELVARLIHEQGPRIERPFV 188 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NC A+ L++SE FGH+ G+FTGA + G F+ A GGTLFLDE+A PM +Q KLL Sbjct: 189 PVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLPMAMQVKLL 248 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R I+ + VGG Q + V+VR++CAT+ DL A V G FR DL RL +++PPLRE Sbjct: 249 RAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRE 308 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI L+AE ++ + LP T A+E L NYR+PGN+REL+N++ER+ Sbjct: 309 RREDIPLLAERILKRLAGDTGLPA-ARLTGDAQEKLKNYRFPGNVRELENMLERA----- 362 Query: 242 TSDYPL-DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 Y L +D I P R + A E + + +L ++ E++L+ +L++ ++ Sbjct: 363 ---YTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLEDYLEDIERKLIMQALEETRW 419 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N+ AA+ LGLT+ R LKK I Sbjct: 420 NRTAAAQRLGLTFRSMRYRLKKLGI 444 >UniRef50_C1ZA32 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=10 Tax=Bacteria RepID=C1ZA32_PLALI Length = 551 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/316 (41%), Positives = 178/316 (56%), Gaps = 23/316 (7%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G++ + V +Q+ +AP D VLI+GE GTGKEL+A +H S R P I +NCAA Sbjct: 222 LIGQSPALGTVSQQIDLVAPTDSSVLILGESGTGKELVAREIHRRSRRSNRPLIKVNCAA 281 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + L +SE FGH GAFTGA + GRFE ADGGTLFLDE+ P+ +Q KLLRV++ G Sbjct: 282 VPRELYESEFFGHAKGAFTGALRDRVGRFELADGGTLFLDEVGEIPLELQAKLLRVLQEG 341 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ELERVG + +VNVR++ ATN DL G FR DL RL+ V++PPLR R+ D+ Sbjct: 342 ELERVGEERTRKVNVRIIAATNRDLRMEAEAGRFRQDLYYRLSVFPVEVPPLRRRKEDVP 401 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR-------- 239 L+A +F R++ P P T + L Y WPGN+REL++V+ER+V Sbjct: 402 LLASHFLRIAARKVGRPQ-PLLTLAIVQKLQQYDWPGNVRELQHVIERAVITSTNERLLI 460 Query: 240 ---HGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQ 296 T P + + P ++ A S+ + T DL QM+ E L L Sbjct: 461 ELPQTTGSKPTRSV-------KSPSNSTATSQEIPIRT---DLEIRQMEAENILAALQAT 510 Query: 297 QGKYNQ-KRAAELLGL 311 GK + AA LLGL Sbjct: 511 HGKISGPGGAAALLGL 526 >UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verrucomicrobia RepID=B5JMF6_9BACT Length = 518 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 110/234 (47%), Positives = 157/234 (67%), Gaps = 9/234 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G++ ++ + + +AP + VLI GE GTGKEL+A+ L+ S+R PFI +NCAA Sbjct: 141 LIGKSGFINQLKDVIRKVAPTEATVLICGENGTGKELVANELYRCSARKSAPFIRVNCAA 200 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 ++E+L++SE FGHE GA+TGA +R GRFE ADGGT+ LDE++ VQ KLLRV++ Sbjct: 201 ISESLIESEFFGHEKGAYTGATQRREGRFELADGGTILLDEISEISPKVQAKLLRVLQER 260 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG++ ++V+VR++ TN +L V G FR DL RL +Q+PPLR+R+ D++ Sbjct: 261 EFERVGGNKTIKVDVRVIATTNRNLAQSVERGMFRQDLYYRLNVFPIQVPPLRDRDGDVV 320 Query: 188 LMAEYFAIQMCR----EIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 L+A+ FA R +IK GF A E L + WPGN+REL+N VER+V Sbjct: 321 LLAKNFAQSFGRKHGKQIK-----GFAPEAVEALERHPWPGNVRELQNTVERAV 369 >UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7U7_9BACT Length = 462 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/301 (43%), Positives = 178/301 (59%), Gaps = 8/301 (2%) Query: 12 ANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 AN +V+ V +AP VL+ GE GTGKE+ A +H S R G F+ ++CAAL Sbjct: 159 ANPMTKVMSLVKTVAPTRSTVLLTGESGTGKEVFARMIHDWSGR-TGYFVPVHCAALTAT 217 Query: 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELER 131 LL+SELFG+E GAFTGA +RH GRFE AD GTLFLDE+ Q KLLRV+E ER Sbjct: 218 LLESELFGYEKGAFTGAAERHKGRFEVADHGTLFLDEIGEIDPATQVKLLRVLETRSFER 277 Query: 132 VGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAE 191 VGG++ ++V+VRLV ATN DL MV+EGTFR DL RL+ ++LPPLR+R+SDI + Sbjct: 278 VGGTETIKVDVRLVAATNRDLRKMVSEGTFREDLFYRLSVVNLELPPLRDRKSDIPGLIH 337 Query: 192 YFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDII 251 F + RE + + G A L+ Y WPGNIREL+N +E V DI Sbjct: 338 SFIAEFARENERDV-TGIAPDALAELVAYPWPGNIRELRNCIECMVVLAREKILRKSDI- 395 Query: 252 IDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGL 311 P R E+ + + P ++ E E++L++ +L + N+ +AA+LLG+ Sbjct: 396 --PEAVRNHENPVPPGSAATAPEPEIETFE---NSERKLIEKALAECNGNRTQAAKLLGI 450 Query: 312 T 312 + Sbjct: 451 S 451 >UniRef50_C1A568 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A568_GEMAT Length = 526 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 136/335 (40%), Positives = 193/335 (57%), Gaps = 27/335 (8%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ + +L+ VS AP VL+ GE GTGKEL A +H S R PFI LNCAA Sbjct: 181 IIGDSPAIRRILQTVSMAAPTRATVLLQGESGTGKELFARAIHDQSERRDKPFIKLNCAA 240 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E L++S LFGHE GAFTGA KR G FERA+ GTL LDE++ + +Q KLLRV++ Sbjct: 241 LPEGLVESALFGHEKGAFTGAIKRVEGAFERANRGTLLLDEISEMRLDLQAKLLRVLQEQ 300 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG+ P++V+VR+V TN DL + GTFR DL RL+ V +PPLR+R D+ Sbjct: 301 EFERVGGTSPIKVDVRIVATTNRDLAMEADHGTFRQDLYYRLSTIPVLIPPLRDRAEDVP 360 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY--------- 238 ++A FA++ EI + G ++ A E+L Y WPGNIREL++V+ER+V Sbjct: 361 VLALRFAMRTAAEIGKKI-EGLSQDALESLQQYPWPGNIRELQHVIERAVILTPDPIIQP 419 Query: 239 ------RHGTSDYPLDDIIIDPFKRRPP--EDAIAVSETTSLP----TLP---LDLREFQ 283 R G + + L + P P + +AVS + P T P + L Sbjct: 420 HCLEGTRFGLA-HSLGAPNMRPRAIATPGAQPVLAVSGAAAAPGSMNTPPNGGIALSSLN 478 Query: 284 M-QQEKELLQLSLQQGKYNQKRAAELLGLTYHQFR 317 + E+ L+Q +L N+ +AA++LG++ R Sbjct: 479 VADAERVLIQHALAAADNNRTKAADMLGISVRTLR 513 >UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteroidetes RepID=C7PQF7_CHIPD Length = 461 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 108/231 (46%), Positives = 151/231 (65%), Gaps = 1/231 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++GE+ + ++ +S +AP D VLI GE GTGKE IA +H LS R P I +NCA Sbjct: 147 GIIGESQRLQQTMQHLSVVAPSDTSVLITGESGTGKEKIADLIHRLSGRASKPLIKVNCA 206 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ L++S LFGHE GAF+GA +RH G+FE+A GG++FLDE+ P+ +Q KLLRV++ Sbjct: 207 AMPAELIESLLFGHEKGAFSGALERHIGKFEQASGGSIFLDEIGEMPVDMQVKLLRVLQE 266 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ER+G +V+VR++ AT+ +L V +G FR D RL + LPPLRER DI Sbjct: 267 KEIERIGAMHSQKVDVRIISATSRNLEKEVADGRFRMDFYYRLNVFPLHLPPLRERREDI 326 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 + +YF CR I PL T R ++L+ Y WPGNIREL++++ERSV Sbjct: 327 PALVDYFLEMHCRNIGRPLVT-VTRRVMDSLILYSWPGNIRELEHLIERSV 376 >UniRef50_C7LP58 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrionales RepID=C7LP58_DESBD Length = 469 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 127/328 (38%), Positives = 193/328 (58%), Gaps = 11/328 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G S VL +AP VLI GE GTGKE+ A +H S R PF+++NCA Sbjct: 136 SIVGTHPSVTRVLALARQVAPSKATVLISGESGTGKEMFARFIHAHSGRENAPFVAVNCA 195 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E+LL+SELFGHE G+FTGA R G+FE A GGTL LDE++ + +Q KLLR ++ Sbjct: 196 ALPEHLLESELFGHEKGSFTGAISRKLGKFELASGGTLLLDEISEMALALQAKLLRALQE 255 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE++RVGG + ++V+VR++ TN +L V +G FR DL RL ++LP L +R D+ Sbjct: 256 GEIDRVGGVETVKVDVRVLATTNRNLEQSVEKGEFRQDLFYRLNVIPLRLPSLAQRGDDV 315 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +L+A++F ++ RE L TE AR+ L+ + WPGN+REL+N++ER+V G Sbjct: 316 LLLADFFIRRLTREYGLGSLQLSTE-ARDWLMAHDWPGNVRELQNLMERAVLLAGAGPIR 374 Query: 247 LDDIIIDPFKRRP---------PEDAIAVSETTSLPTLPLDLREFQMQQ-EKELLQLSLQ 296 ++D + P +++ TS T+ D R +Q+ E L+ SL Sbjct: 375 SMHFLLDGQEWSPEINEEGEAAAPGVLSMPSATSAVTIDADGRIPTIQEMEMHLIIKSLD 434 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKHQ 324 + N+ +A+ELLG++ R L +++ Sbjct: 435 KTAGNRTKASELLGISVRTLRNKLGEYR 462 >UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis family n=1 Tax=Persephonella marina EX-H1 RepID=C0QPW4_PERMH Length = 443 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 120/318 (37%), Positives = 187/318 (58%), Gaps = 10/318 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + + +V + + AP D PVLIIGE GTGKEL A +H S+R PF+ +NCAA Sbjct: 131 MIGTSEAMKKVFQLIRKFAPTDYPVLIIGETGTGKELTARAIHERSNRADKPFVVVNCAA 190 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + +LL++ELFG+E GAFTGA K+ G+ E A+GGTLFLDE+ P +Q K+LR ++ Sbjct: 191 IPHDLLEAELFGYEKGAFTGADKKRIGKIEYANGGTLFLDEIGDMPYDLQSKILRFLQEY 250 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ER+G ++ +VR++ ATN DL V EG FR DL RL+ ++LPPLR+R D + Sbjct: 251 TFERIGSNETKTADVRIIAATNVDLDQAVKEGKFRRDLYYRLSVLTIKLPPLRDRGEDPV 310 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +MA+YF + +E+ + G T A E + ++ WPGN+REL N + ++V + Sbjct: 311 IMAKYFVERYSKELGKNI-KGLTADALEVIRDHPWPGNVRELINTIRKAVVLTDKEFIDV 369 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 +D +D + P+ + + +L DL E+ LL+ + K N + A+ Sbjct: 370 ED--LDLKVKCNPQGSGNGEDILNLKRNIEDL-------ERRLLKEAFILAKGNISKVAK 420 Query: 308 LLGLTYHQFRALLKKHQI 325 +LG++ + L++KH I Sbjct: 421 MLGISRPKVYKLMEKHGI 438 >UniRef50_Q9K4U8 Nitric oxide reductase transcription regulator norR2 n=45 Tax=Proteobacteria RepID=NORR2_RALEH Length = 521 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 111/249 (44%), Positives = 163/249 (65%), Gaps = 11/249 (4%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ + +L ++ +A D PVL++GE G GKEL A RLH S R P + +NCAA Sbjct: 193 IIGQSEAIANLLHELEVVADTDLPVLLLGETGVGKELFAHRLHRQSRRRAQPLVHVNCAA 252 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E+L +SELFGH GAF+GA PGRFE ADGGTLFLDE+ P+ +Q KLLR ++ G Sbjct: 253 LPESLAESELFGHARGAFSGATGERPGRFEAADGGTLFLDEVGELPLAIQAKLLRTLQNG 312 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++R+G +P +VNVR++ ATN +L V +G+FRADL RL+ + +PPLRER +D++ Sbjct: 313 EIQRLGSDRPRRVNVRVIAATNRNLREHVRDGSFRADLYHRLSVYPIPIPPLRERGNDVL 372 Query: 188 LMAEYF-----AIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 L+A F A R ++L + A++ L +YRWPGN+REL++V+ R+ R + Sbjct: 373 LLAGRFLELNRARLGLRSLRL------SGGAQDALRSYRWPGNVRELEHVISRAALRAVS 426 Query: 243 SDYPLDDII 251 +DI+ Sbjct: 427 RGAGRNDIV 435 >UniRef50_D2R4F1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4F1_9PLAN Length = 533 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 134/327 (40%), Positives = 186/327 (56%), Gaps = 8/327 (2%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 ++ + ++G + EV+E+ + +A D PVL++GE G+GKE+IA +H S R +GPF+ Sbjct: 189 SDLSETIVGSESGLREVMERATLVARADVPVLLLGETGSGKEVIARAVHRGSRRAEGPFL 248 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NC A+ L+DSELFGHE G+FTGA G FERADGGTLFLDE Q +LL Sbjct: 249 RVNCGAIPAELVDSELFGHEKGSFTGASAIRKGWFERADGGTLFLDECGELTPAAQVRLL 308 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ G ERVGG + L V+VR++ AT+ +L MV EGTFR DL RLA V LPPLR+ Sbjct: 309 RVLQDGTFERVGGEKQLHVDVRVIAATHRNLQGMVREGTFREDLWYRLAVFPVHLPPLRD 368 Query: 182 RESDIMLMAEYFAIQMCREIKL-PLFPGFTERARETLLNYRWPGNIRELKNVVER-SVYR 239 R DI MA +FA + L P P TE LLNY WPGN REL V+ER ++ Sbjct: 369 RREDIPAMAIHFAARAAARYGLRPCNP--TEEDMHLLLNYSWPGNARELGAVMERAAILG 426 Query: 240 HGTS---DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQ 296 +G S L ++ P PP + +S + + + + L+ Sbjct: 427 NGHSLDVATALGNVPALPAATSPPAQRAPAAVASSSASRETVVTLDEANRRHIQSALAAT 486 Query: 297 QGKYNQKR-AAELLGLTYHQFRALLKK 322 G+ R AA++LG+ H RA ++K Sbjct: 487 DGQIEGHRGAAKILGINPHTLRARMRK 513 >UniRef50_A8FQ36 Formate hydrogenlyase transcriptional activator, putative n=9 Tax=Shewanella RepID=A8FQ36_SHESH Length = 518 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 120/321 (37%), Positives = 188/321 (58%), Gaps = 8/321 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G + V++QV +A L+ VL++GE G GKE+IA+ +H LS R PFI +NC Sbjct: 198 NGVVGAHSGLKHVMQQVESIAKLNTTVLMLGETGCGKEVIANAIHELSLRANKPFIKVNC 257 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ E+L+DSE+FG+E GAFTGA+ R G FE+A+GGT+FLDE+ P+ VQ +LLRV++ Sbjct: 258 GAIPESLIDSEMFGYERGAFTGAESRKAGYFEQANGGTIFLDEIGELPLSVQVRLLRVLQ 317 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + RVGG +Q+++R++ AT+ +L AMV+ G FR DL RLA +++P LR+R +D Sbjct: 318 NSTITRVGGHDSVQLDIRVIAATHRNLKAMVSTGEFREDLWYRLAIFPIEIPSLRQRRTD 377 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ ++F + + P L Y WPGN+REL NV+ER++ +H Sbjct: 378 IPLLVQHFIEMLSAKFNQDQLPRVAPEQLAILSQYHWPGNVRELINVLERAIIQHPKGPL 437 Query: 246 PLDDIIID---PFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGK-YN 301 D ++ + K + E I + +PL+ M ++ L + GK Y Sbjct: 438 NFDFLVPEVKAEHKEKRGETIIVDPSHATDKLVPLE----TMTRKYIEHALRVTGGKLYG 493 Query: 302 QKRAAELLGLTYHQFRALLKK 322 AA+LL + + R+ +KK Sbjct: 494 PGGAAQLLDINPNTMRSKMKK 514 >UniRef50_C7I4S2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thiomonas intermedia K12 RepID=C7I4S2_THIIN Length = 497 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 120/323 (37%), Positives = 183/323 (56%), Gaps = 6/323 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 L+ E+ + ++L V A D V+++GE G GKE++A +H S R GPFI++NC Sbjct: 160 SGLIAESAAMQQILTIVRRAAQTDVTVMLLGESGVGKEVMARYVHAQSPRSAGPFIAINC 219 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ E LL++ LFG E GAFTGA + PG+FE+A GGTL LDE+ +Q KLLRV++ Sbjct: 220 AAIPETLLEATLFGFEKGAFTGAGQSAPGKFEQAQGGTLLLDEVTEMAPALQAKLLRVLQ 279 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ER+GG + + ++VRLV +N DL V +G R D+ RL VQ+PPLRER D Sbjct: 280 EREIERLGGRKRIALDVRLVATSNRDLQQAVQQGVLREDVYYRLNVFPVQIPPLRERRDD 339 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I+ +A+ ++ + + P A++ LL +RWPGN+REL NV++R+ Sbjct: 340 ILPLAKAMLVRHAAQFGMTPSPRLDSSAQQALLAHRWPGNVRELDNVMQRAAILSQGGVI 399 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPL------DLREFQMQQEKELLQLSLQQGK 299 D++ P P+ ++ P P DL E++L+ +LQ + Sbjct: 400 SAADLLFPPPAAETPQRVSTPAQPQLTPQAPTPQPFSGDLGSELALNERQLIADALQHSQ 459 Query: 300 YNQKRAAELLGLTYHQFRALLKK 322 +++RAAE LG++ R L+K Sbjct: 460 GSKQRAAERLGISPRTLRHKLQK 482 >UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GID7_CLOBL Length = 542 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 123/311 (39%), Positives = 190/311 (61%), Gaps = 13/311 (4%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +KD ++G+++ + A + VLI+GE GTGKEL A +H S+R GPFI + Sbjct: 229 FKD-IVGDSSESNNIKSLAKKSANTNSNVLIVGESGTGKELYAHSIHNASNRRLGPFIKI 287 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGR-FERADGGTLFLDELATAPMMVQEKLLR 122 NC A+ LL+SELFG+E GAFTGA+K FE A+GGT+FLDE+ PM +Q KLLR Sbjct: 288 NCGAIPAELLESELFGYEDGAFTGAKKGGKKGKFELANGGTIFLDEIGDMPMCMQVKLLR 347 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 VI+ E+E+VGG+ +++VR++ ATN +L +V + FR DL RL + +P LRER Sbjct: 348 VIQEREVEKVGGNILKKIDVRIIAATNKNLEKLVEKNKFREDLYYRLNVIRINVPSLRER 407 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + DI+L++++ ++ + + + G ++ A+E L NY WPGNIREL+NV+ERS Sbjct: 408 KEDILLISDFLVKKVSHRLGICI-KGISKEAKEYLCNYNWPGNIRELENVIERS------ 460 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLD-LREFQMQQEKELLQLSLQQGKYN 301 ++ D +I P K P E I S PT L++ + EKE++ L++ N Sbjct: 461 ANLLDSDFVIKP-KHLPKE--ILKSYIVKAPTKENKYLKDIISEVEKEVICNCLEKNNGN 517 Query: 302 QKRAAELLGLT 312 + + +++LG++ Sbjct: 518 KNKTSKILGIS 528 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 125/318 (39%), Positives = 189/318 (59%), Gaps = 9/318 (2%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G+ + ++ E VS LA D VLI GE G GKE++A LH SR P +S+NC A Sbjct: 145 LIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVLAKALHKSGSRSGKPLVSINCGA 204 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E LL+SELFGH GAFTGA + PGRFE A+GGT+FLDE+ +Q KLLRV++ Sbjct: 205 IPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIFLDEIGDMSAKLQVKLLRVLQER 264 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E VG Q + V+VR++ AT+ DL A + G FR DL RL + LPPLRER DI+ Sbjct: 265 CFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDLYYRLNVIPLTLPPLRERGDDIL 324 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVER--SVYRHGTSDY 245 L+ ++F + ++ K + G ++ + +LNY+WPGN+REL+N++ER ++ RHG + Sbjct: 325 LLTDHFITRFNQQKKADI-TGVSDEVKRIILNYQWPGNVRELQNLIERVTTLKRHGIME- 382 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLP-LDLREFQMQQEKELLQLSLQQGKYNQKR 304 L+D+ P + ++ + S + +DL+ + E L+ +LQ+ ++N+ + Sbjct: 383 -LEDL---PSRMISDKERVLQSFRMDVENAECIDLKSTVDEFESHLILSALQRFQWNKNQ 438 Query: 305 AAELLGLTYHQFRALLKK 322 AA L + +KK Sbjct: 439 AANFLAMNRTTLVEKIKK 456 >UniRef50_Q12HA0 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=9 Tax=Proteobacteria RepID=Q12HA0_POLSJ Length = 604 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/346 (39%), Positives = 188/346 (54%), Gaps = 27/346 (7%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A D ++G +++F Q+S +A VL GE G GKE A LH +S R PF+ Sbjct: 263 ASAGDAMVGASSAFNAACHQLSRVARTSATVLFTGESGVGKEKFARMLHKISPRKDRPFV 322 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 ++NCAA+ E L++SELFG E GA+TGA PGRFERA GGTLFLDE+ + + Q KLL Sbjct: 323 AVNCAAIPETLIESELFGVERGAYTGASHSRPGRFERASGGTLFLDEIGSLSYVAQGKLL 382 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R ++ GE+ERVGG++ + V+VR+V ATN L V EG FR DL RL + LPPLRE Sbjct: 383 RALQEGEVERVGGTRSIAVDVRVVAATNEALRQAVLEGKFREDLFFRLNVFPIHLPPLRE 442 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS----- 236 R DI L+ +F + R GFT+ A +LLNY +PGNIREL+N++ER+ Sbjct: 443 RRDDIPLLMNHF-LNHYRRKHGCNTGGFTQAAVRSLLNYAFPGNIRELQNLIERAVIMAD 501 Query: 237 ------VYRHGTSDYPLD-DIIIDPFKRRPPE----------DAIAVSETTSLPTLPLDL 279 V+ TS L DI+ K A+A++ +S P L Sbjct: 502 MEGLIDVHHLFTSGETLSADIMTLRLKGSSATLNFAEPAGCAQALAIATPSSTAQAPQSL 561 Query: 280 REFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 Q E++ L ++ + N AA LL T + +KH++ Sbjct: 562 D----QTERDTLLRAISTSQGNLSAAARLLNTTRAKLAYRARKHRL 603 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 111/231 (48%), Positives = 153/231 (66%), Gaps = 2/231 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + ++ ++ V AP D VL++GE GTGKEL+A LH S+R PFI++NCAA Sbjct: 155 VIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELLARSLHEGSARADKPFIAINCAA 214 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E++L+ ELFG+E GAFTGA GRFE A GGTLFLDE+ P VQ KLLRV++ G Sbjct: 215 IPESILEGELFGYEKGAFTGATSSREGRFEAASGGTLFLDEVGEMPRHVQVKLLRVLQEG 274 Query: 128 ELERVGGSQPLQ-VNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ER+GGS + +++RL+ ATN +L V EG FR DL RL + +PPLRER DI Sbjct: 275 EIERLGGSGRTRPIDIRLIAATNVELAKAVQEGRFREDLYYRLNVISIAVPPLRERRDDI 334 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 L+ ++F +Q+ + G T+ A + L Y WPGN+REL+N VER+V Sbjct: 335 PLLVQHF-LQVYADKNGKFMAGCTQDALDRLCRYAWPGNVRELENAVERAV 384 >UniRef50_Q88RJ6 Alginate biosynthesis transcriptional regulatory protein algB n=31 Tax=Bacteria RepID=ALGB_PSEPK Length = 448 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/232 (48%), Positives = 149/232 (64%), Gaps = 1/232 (0%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 KD L + + + VLE +A D +LI+GE GTGK +A +H S R + +++N Sbjct: 144 KDGLDSHSPAMMAVLETARQVAITDANILILGESGTGKGELARAIHGWSKRARKACVTIN 203 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C +LN L++SELFGH GAFTGA + GR +ADGGTLFLDE+ P+ +Q KLLR I Sbjct: 204 CPSLNAELMESELFGHTRGAFTGASESTLGRVSQADGGTLFLDEIGDFPLTLQPKLLRFI 263 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E ERVG + +VR++ ATN +L MV E FR DLL RL + LPPLRER Sbjct: 264 QDKEYERVGDPVTRRADVRILAATNLNLEEMVRESRFREDLLYRLNVITLHLPPLRERSE 323 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERS 236 DI+++A+ F + +E P GF++ AR LLNYRWPGNIREL+NVVER+ Sbjct: 324 DILILADRFLARFVKEYSRPA-RGFSDEARTALLNYRWPGNIRELRNVVERA 374 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/318 (40%), Positives = 181/318 (56%), Gaps = 10/318 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + E+ + + +A VLI GE GTGKEL+A LH S R +GPF+ LNCAA Sbjct: 165 IIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRREGPFVKLNCAA 224 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L+E +L+SELFGH GAFTGA + PGRFE A GGTLFLDE+ +Q KLLRV++ Sbjct: 225 LSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSMQVKLLRVLQEE 284 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG++ ++V+VR++ ATN DL + EG+FR DL RL V LPPLRER+ D+ Sbjct: 285 EFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPLRERQGDLP 344 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+ + F + E+ + G T A + LLNY +PGNIREL+N++E + S L Sbjct: 345 LLIQSFIERYNAELGKNI-QGLTSEAMKVLLNYHYPGNIRELQNIIEHAALLCNDSRIDL 403 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 R P D + +S L + EKEL++L++ + N A Sbjct: 404 ---------RHLPGDLLPAQSQSSFLELAMMEENPVRYVEKELIRLAMAESGGNVSEVAR 454 Query: 308 LLGLTYHQFRALLKKHQI 325 L + LK+ ++ Sbjct: 455 KLSMGRSTLWRRLKEMKL 472 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 120/331 (36%), Positives = 190/331 (57%), Gaps = 19/331 (5%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + + N++G + + + + + +A D +LI GE GTGKE++A +H+ S R PF++ Sbjct: 140 QVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKEMVARAIHFNSGRLGKPFVA 199 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAA+ +LL+SELFG E GAFTGA +R G+FE+A+ GT+FLDE+ P+ +Q K+LR Sbjct: 200 INCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQGTIFLDEIGDMPLDLQAKILR 259 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E+ RVGG+Q + VNVR+V ATN +L V + FR DL RL + L PLRER Sbjct: 260 VLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFREDLYYRLNVVPITLAPLRER 319 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI + YF + C E+ +P T A L + WPGN+REL+N ++R+V + Sbjct: 320 RDDIPELVRYFLDRTCTELSIP-PKQLTPEAMALLSRHSWPGNVRELENTIKRAVIL--S 376 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLR----------------EFQMQQ 286 +D L + D + E A+ + + + LR + Q Sbjct: 377 NDPMLTEADFDGLQPEGEETAMTPQDASLEAIVEAKLRSCLTGIEKLDKSDIHAKVLQQV 436 Query: 287 EKELLQLSLQQGKYNQKRAAELLGLTYHQFR 317 E+ L++ L++ ++NQ +AA++LG+ + R Sbjct: 437 ERPLIRFILEKTRWNQVKAADILGINRNTLR 467 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 522 e-147 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 516 e-145 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 512 e-144 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 510 e-143 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 509 e-143 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 509 e-143 UniRef50_P37344 Psp operon transcriptional activator n=175 Tax=B... 506 e-142 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 504 e-141 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 503 e-141 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 503 e-141 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 502 e-141 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 498 e-139 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 497 e-139 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 496 e-139 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 495 e-139 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 495 e-139 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 495 e-139 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 495 e-139 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 495 e-138 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 494 e-138 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 494 e-138 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 494 e-138 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 494 e-138 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 494 e-138 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 494 e-138 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 494 e-138 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 493 e-138 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 493 e-138 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 492 e-138 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 492 e-138 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 492 e-138 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 492 e-138 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 492 e-137 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 491 e-137 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 491 e-137 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 490 e-137 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 490 e-137 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 490 e-137 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax... 490 e-137 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 490 e-137 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 489 e-137 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 489 e-137 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 488 e-137 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 488 e-136 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 488 e-136 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 488 e-136 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 488 e-136 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 488 e-136 UniRef50_Q6ARB9 Probable two-component system response regulator... 487 e-136 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 487 e-136 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 487 e-136 UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 ... 487 e-136 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 487 e-136 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 486 e-136 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 486 e-136 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 486 e-136 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 486 e-136 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 485 e-136 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 485 e-135 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 485 e-135 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 485 e-135 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 485 e-135 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 485 e-135 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 485 e-135 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 484 e-135 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 484 e-135 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 484 e-135 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 483 e-135 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 483 e-135 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 483 e-135 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 483 e-135 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 482 e-135 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 482 e-135 UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovib... 482 e-134 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 481 e-134 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 481 e-134 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 481 e-134 UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional... 481 e-134 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 480 e-134 UniRef50_A8V246 Two component, sigma54 specific, transcriptional... 480 e-134 UniRef50_C9YE96 Transcriptional regulatory protein xylR n=1 Tax=... 480 e-134 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 479 e-134 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 479 e-134 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 479 e-134 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 479 e-134 UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candida... 479 e-134 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 479 e-134 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 478 e-134 UniRef50_P26047 Signal-transduction and transcriptional-control ... 478 e-134 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 478 e-133 UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteob... 478 e-133 UniRef50_B9M6T3 Sigma54 specific transcriptional regulator, Fis ... 478 e-133 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 478 e-133 UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional... 477 e-133 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 477 e-133 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 477 e-133 UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional... 477 e-133 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 477 e-133 UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putativ... 477 e-133 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 477 e-133 UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional... 477 e-133 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 476 e-133 UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis... 476 e-133 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 476 e-133 UniRef50_B8DLL1 Sigma54 specific transcriptional regulator, Fis ... 476 e-133 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 476 e-133 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 475 e-133 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 475 e-133 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 475 e-133 UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidat... 475 e-133 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 475 e-133 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 475 e-133 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 475 e-132 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 475 e-132 UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily... 475 e-132 UniRef50_Q3A103 Two component, sigma54 specific, transcriptional... 474 e-132 UniRef50_Q1MPA8 Response regulator containing CheY-like receiver... 474 e-132 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 474 e-132 UniRef50_B8J0D0 Sigma54 specific transcriptional regulator, Fis ... 474 e-132 UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-ty... 474 e-132 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 474 e-132 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 473 e-132 UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n... 472 e-132 UniRef50_C7LP58 Two component, sigma54 specific, transcriptional... 472 e-132 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 472 e-132 UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regula... 472 e-132 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 472 e-132 UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis f... 472 e-132 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 472 e-131 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 472 e-131 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 472 e-131 UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional... 471 e-131 UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis ... 471 e-131 UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis F... 470 e-131 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 470 e-131 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 470 e-131 UniRef50_Q46PB6 Helix-turn-helix, Fis-type n=7 Tax=Burkholderiac... 470 e-131 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 470 e-131 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 470 e-131 UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=De... 470 e-131 UniRef50_C4XJ05 Fis family transcriptional regulator n=2 Tax=Des... 470 e-131 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 469 e-131 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 469 e-131 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 469 e-131 UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator ... 469 e-131 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 469 e-131 UniRef50_A6G018 Two component, sigma54 specific, transcriptional... 469 e-131 UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 ... 468 e-131 UniRef50_C6NRF1 Sigma54 specific transcriptional regulator, Fis ... 468 e-131 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 468 e-131 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 468 e-130 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 468 e-130 UniRef50_A4VMJ3 Transcriptional regulator FleQ n=69 Tax=Gammapro... 468 e-130 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 468 e-130 UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis F... 468 e-130 UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis F... 468 e-130 UniRef50_A0L4D4 Two component, sigma54 specific, transcriptional... 468 e-130 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 467 e-130 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 467 e-130 UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcr... 467 e-130 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 467 e-130 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 467 e-130 UniRef50_Q3A203 Two component signal transduction response regul... 467 e-130 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 467 e-130 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 467 e-130 UniRef50_P19323 Formate hydrogenlyase transcriptional activator ... 467 e-130 UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis ... 467 e-130 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 467 e-130 UniRef50_A1VHZ7 Two component, sigma54 specific, transcriptional... 467 e-130 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 466 e-130 UniRef50_A3EU11 Putative sigma54 specific transcriptional regula... 466 e-130 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 466 e-130 UniRef50_A3ERY0 Putative two component, sigma54 specific, transc... 466 e-130 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 466 e-130 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 466 e-130 UniRef50_Q01QL4 Sigma54 specific transcriptional regulator, Fis ... 465 e-130 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 465 e-130 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 465 e-130 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 465 e-130 UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein ... 465 e-130 UniRef50_C7I4S2 Two component, sigma54 specific, transcriptional... 465 e-130 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 465 e-130 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 465 e-129 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 465 e-129 UniRef50_A8USY5 Two component, sigma54 specific, transcriptional... 465 e-129 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 465 e-129 UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1... 464 e-129 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 464 e-129 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 464 e-129 UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing p... 464 e-129 UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis ... 464 e-129 UniRef50_B9M2U3 Two component, sigma54 specific, transcriptional... 463 e-129 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 463 e-129 UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis F... 463 e-129 UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis F... 463 e-129 UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=1... 463 e-129 UniRef50_Q0F179 Putative transcriptional regulator, Fis family p... 463 e-129 UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3... 463 e-129 UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphapro... 463 e-129 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 463 e-129 UniRef50_P17899 Transcriptional regulatory protein flbD n=24 Tax... 463 e-129 UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 ... 463 e-129 UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional r... 463 e-129 UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fi... 462 e-129 Sequences not found previously or not previously below threshold: UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 497 e-139 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 492 e-138 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 484 e-135 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 480 e-134 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 476 e-133 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 476 e-133 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 476 e-133 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 475 e-133 UniRef50_A5F6B9 Flagellar regulatory protein A n=61 Tax=Gammapro... 475 e-132 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 475 e-132 UniRef50_D2L1Y0 Two component, sigma54 specific, transcriptional... 474 e-132 UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fi... 473 e-132 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 473 e-132 UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis ... 473 e-132 UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionell... 472 e-132 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 472 e-132 UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis ... 472 e-132 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 472 e-132 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 470 e-131 UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Ca... 470 e-131 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 470 e-131 UniRef50_C6HWP3 Sigma54 specific transcriptional regulator, Fis ... 470 e-131 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 469 e-131 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 469 e-131 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 468 e-131 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 468 e-131 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 468 e-130 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 468 e-130 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 468 e-130 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 466 e-130 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 466 e-130 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 466 e-130 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 465 e-130 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 465 e-129 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 465 e-129 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 465 e-129 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 463 e-129 UniRef50_A0L4D6 Sigma54 specific transcriptional regulator, Fis ... 463 e-129 UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis F... 463 e-129 UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator ... 463 e-129 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 463 e-129 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 463 e-129 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 462 e-129 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 522 bits (1345), Expect = e-147, Method: Composition-based stats. Identities = 120/320 (37%), Positives = 181/320 (56%), Gaps = 5/320 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N +G++ V E + +A D VLI GE GTGKELIA +HY S R P + +NC Sbjct: 146 ENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELIARAIHYNSPRRDDPMVIINC 205 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ E LL+SELFGHE GAFTGA K GRFE A+GGT+FLDE+ +Q KLLRVI+ Sbjct: 206 GAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQ 265 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ER+G ++ + V++R++ ATN DL V + FR DL RL +++PPLR+R+SD Sbjct: 266 EQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYYRLNVIPIEVPPLRDRKSD 325 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ ++F ++ E + P+ ++ A L+ + WPGN+REL+NVVER + Sbjct: 326 IPLLIDFFINKLAAEKERPV-KRISQAAMNALMGHHWPGNVRELENVVERVLILSSGDTI 384 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 +D+ E + LP+ + + EK L+ +L++ + + +A Sbjct: 385 DKEDLPATILGLDSKEPEAGL----KLPSGGIRFDHAVEEYEKNLIVQALEEANWVKTQA 440 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+LL + +K+ I Sbjct: 441 AKLLHINRTTLVEKMKRKNI 460 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 119/320 (37%), Positives = 189/320 (59%), Gaps = 9/320 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++NS E+ E + +A + +++ GE GTGKEL+ LHY R PF+ +NCA Sbjct: 283 EMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKELVVRALHYGGERRDNPFVKVNCA 342 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ +++L+SELFGHE GAFTGA K+ GRFE A GTLFLDE+ + +Q K LR+I+ Sbjct: 343 AMPKDILESELFGHEKGAFTGADKKRVGRFELAHKGTLFLDEIGDMDLSIQAKFLRIIQQ 402 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG++ ++V+VR++CATN DL V EG FR DL RL + +PPLRER+ DI Sbjct: 403 QEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLYVPPLRERKEDI 462 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +F + ++ + P + + L+ Y WPGN+REL+N +ER++ G Sbjct: 463 PFLIHHFLKEKGKKFDK-IAPKISPEVFDALMEYDWPGNVRELENAMERAIILCGKDLIR 521 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREF-QMQQEKELLQLSLQQGKYNQKRA 305 L+++ I K D S P+D++E E+E++ +L++ +N+ + Sbjct: 522 LNNLPISIVKNNKEFDE-------SKHVTPIDIKEITIRNMEREIIIEALEKCDWNRTKT 574 Query: 306 AELLGLTYHQFRALLKKHQI 325 ++ LG++ +K+ I Sbjct: 575 SKSLGISRRTLYNKMKEFNI 594 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 512 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 127/325 (39%), Positives = 182/325 (56%), Gaps = 4/325 (1%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 +A L+G + + EV + + +A D VLI GE GTGKEL+A +HY S R PF Sbjct: 132 IAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNSPRQGKPF 191 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + ++C A+ ENLL+SELFGHE GAFTGA R G+FE ADGGT+FLDE+ +Q KL Sbjct: 192 VKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDISPALQAKL 251 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LR ++ ERVGG++ +V+VR++ ATN DL V G FR DL RL ++LPPLR Sbjct: 252 LRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLR 311 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DIML+ +YF R+ + G T + LL Y WPGN+REL+NV ER+V Sbjct: 312 ERKEDIMLLVDYFVSLSNRKFGKQV-TGLTRSVADILLQYNWPGNVRELRNVCERAVLMA 370 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + + + P + + L L+E + E+ + +L++ + Sbjct: 371 RGNVITPESL---PEYLLRAVRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRALEEYRG 427 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N+ A LG++ A +K+ I Sbjct: 428 NKTAVARALGMSRTTLYAKMKELGI 452 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 122/319 (38%), Positives = 186/319 (58%), Gaps = 8/319 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + S V + + +A + VLI GE GTGKEL+A +HY SSR PFI +NCA Sbjct: 141 NIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARAIHYNSSRRNNPFIKVNCA 200 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 L ++LL+SELFG+E GAFTGA GRFE A GT+F DE+ + Q KLLR I+ Sbjct: 201 NLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFFDEIGEISLATQAKLLRAIQE 260 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E +RVGG++ ++VNVR++ ATN L V EG FR DL RL +++PPLR+R+ DI Sbjct: 261 KEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFRLNVVNIEIPPLRDRKEDI 320 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F + +E + GF++ A + L+ Y WPGN+REL+NVVERS+ + Sbjct: 321 PLLIAHFLAKYNKEFNKEI-KGFSKEAIKLLIGYDWPGNVRELENVVERSIIMARGAIIV 379 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 +DI + + P + + E L L++ E++++ +L++ + + A Sbjct: 380 PEDIQLGATVSQQPTELEILDEN-------LSLKQIISDVERKVILKALEENNWCRTTVA 432 Query: 307 ELLGLTYHQFRALLKKHQI 325 ++L + A +K+ I Sbjct: 433 KVLKINRRSLYAKMKELGI 451 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 509 bits (1311), Expect = e-143, Method: Composition-based stats. Identities = 131/319 (41%), Positives = 186/319 (58%), Gaps = 8/319 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 L+G + + EV + +A D VLI GE GTGKEL+A +HY S R + PF+S+NCA Sbjct: 428 QLVGNSAAMQEVYRLIEKVAKTDATVLIRGESGTGKELVARAIHYHSRRSEAPFVSINCA 487 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E LL+SELFGH GAFTGA G FE A+ GT+FLDE+ + +Q KLLRV++ Sbjct: 488 ALPETLLESELFGHARGAFTGAVTAKKGLFEEANEGTIFLDEIGDISLGLQSKLLRVLQE 547 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE RVG ++P +VNVR++ ATN DL V +G FR +LL RL + LPPLRER DI Sbjct: 548 GEFLRVGETRPTRVNVRVLAATNRDLEKAVKDGAFRPELLYRLNVITIWLPPLRERRDDI 607 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A +F + C+ + + GFT A + L+ WPGN+REL+NV+ER+V + Sbjct: 608 PLLARHFLEKSCQRLGKEVN-GFTHEAMDALIRADWPGNVRELENVIERAVILTESKRIE 666 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 L D+ +A + T + +E E L+ +L++ + Q RAA Sbjct: 667 LGDLPRQFRN-------MAAGASGWAFTRGMSFKEAVAAYESRLILQALEESQGVQARAA 719 Query: 307 ELLGLTYHQFRALLKKHQI 325 E+LGL ++K++ + Sbjct: 720 EILGLKRSTLNEMIKRYNL 738 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 509 bits (1311), Expect = e-143, Method: Composition-based stats. Identities = 127/319 (39%), Positives = 185/319 (57%), Gaps = 8/319 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + + +V + +A + VL+ GE GTGKE+ A +H LSSR PF+ +NCA Sbjct: 142 QIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSIHQLSSRRDKPFVPINCA 201 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E+LL+SELFGHE GAFTGA R GRFE A+ GTLFLDE+ P+ +Q KLLRV++ Sbjct: 202 ALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEITEMPLSMQVKLLRVLQE 261 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG+ ++++VR++ ATN D + +GTFR DL RL + LPPLRER DI Sbjct: 262 KEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLNVLPIHLPPLRERTEDI 321 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A +F + + A L++Y WPGNIREL+NV+ERS+ ++ Sbjct: 322 PLLAMHFIKKFN----PSQEQRMSPEAMGLLISYEWPGNIRELQNVIERSIILAQGNEIK 377 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + K ++ + P + E EKEL+ +L++ NQ RAA Sbjct: 378 PHHLPKEIQKLDEVKNETTHGLIINFPDDGISFDE----VEKELILKALEKSNGNQTRAA 433 Query: 307 ELLGLTYHQFRALLKKHQI 325 +LLG+T +K+++ Sbjct: 434 QLLGITRSALLYRAQKYRL 452 >UniRef50_P37344 Psp operon transcriptional activator n=175 Tax=Bacteria RepID=PSPF_ECOLI Length = 325 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 325/325 (100%), Positives = 325/325 (100%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF Sbjct: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL Sbjct: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR Sbjct: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH Sbjct: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY Sbjct: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 NQKRAAELLGLTYHQFRALLKKHQI Sbjct: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 131/327 (40%), Positives = 189/327 (57%), Gaps = 9/327 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G++ + EVL +V +AP + VL+ GE GTGKEL+A +H SSR PF+ +NCA Sbjct: 157 NIIGDSAALGEVLSKVEQVAPTNSTVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCA 216 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL +L+SELFGHE GAFTGA + PGRFE ADGGTLFLDE PM VQ KLLR ++ Sbjct: 217 ALAPGVLESELFGHEKGAFTGAVAQRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQE 276 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG+Q ++V+VR++ ATN DL AM+ G+FR DL RL + LPPLR+R D+ Sbjct: 277 REFERVGGTQTIKVDVRVISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDL 336 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +F + R + PG A + L +Y WPGN+REL+N++ER++ + Sbjct: 337 PALVAHFIAKFARS-GMTRTPGVRGAALDKLRSYTWPGNVRELENIIERAMILARGRELD 395 Query: 247 LDDIII--DPFKRRPPEDAIAVSETTSLPTLPL------DLREFQMQQEKELLQLSLQQG 298 D + P +V T+ + PL L E + E+ + ++++ Sbjct: 396 ADHLDFGRRAQNATPVSGTPSVISETASHSPPLIGDESKPLAERLLDSERREIIAAVEKS 455 Query: 299 KYNQKRAAELLGLTYHQFRALLKKHQI 325 N AA +LG+ ++KH + Sbjct: 456 NNNIASAARMLGINRSTLYYRMRKHGL 482 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 132/334 (39%), Positives = 192/334 (57%), Gaps = 19/334 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ V++ V H+AP VL+ GE GTGKE+IA +HYLS R +GPFI +NC+ Sbjct: 195 GVIGQSKQMQAVMDLVYHVAPSRSTVLLRGESGTGKEVIARTIHYLSPRKEGPFIKVNCS 254 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E +L+SELFGHE GAFTGA GRFE A GGTLFLDE+ VQ KLLRV++ Sbjct: 255 ALPETILESELFGHEKGAFTGALFERKGRFELAHGGTLFLDEIGDISPAVQVKLLRVLQE 314 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG++ ++V+VR++ ATN +L V +G FRADL R+ + LPPLRER+ DI Sbjct: 315 REFERVGGNKTIRVDVRVITATNKNLEEAVLKGEFRADLYFRINVVSISLPPLRERKEDI 374 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A++ ++ +E+ L T A + L+N WPGN+REL+N +ER+ + Sbjct: 375 PLLADHILNKIGKELNRKL--RITPEALKLLINCHWPGNVRELENCLERAATNSRNNWID 432 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQE---------------KELL 291 D+ + P + S P + E + ++E KE + Sbjct: 433 EIDVACRRNQCSSPMLWKKELQVISTPVV--SSEEAKSREETPRSSFFSPLISDDPKEKI 490 Query: 292 QLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 ++++ + Q +AA LL +T Q LKK+ I Sbjct: 491 IQAMEKCGWVQAKAARLLNITPRQLGYALKKYGI 524 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 122/320 (38%), Positives = 183/320 (57%), Gaps = 2/320 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+ +G++ +V + + + D VLI GE GTGKE++A +H S R PFI +NC Sbjct: 141 DSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVVARTIHSNSRRSSRPFIKINC 200 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A + E L++SELFGHE G+FTGA + G+FE A G +FLDE+ P+ Q KLLRV++ Sbjct: 201 ATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVFLDEIGELPLHTQAKLLRVLQ 260 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVGG++ ++V+VR++ ATN +L MV EG FR DL RL V+LPPLRER+ D Sbjct: 261 EKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYYRLNVVNVKLPPLRERKED 320 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ YF + R+ + G ++ A Y WPGN+RE+KNV E++V S Sbjct: 321 ISLLINYFVKKFARKYNKNI-SGISQEAMIFAEKYAWPGNVREIKNVCEQAVVMARNSVL 379 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 LDD+ + E + L++ + EK+++ SL + +N++ Sbjct: 380 MLDDMPLIGNGNGFLEFKNNAKISLDTND-KRSLKDIVAEVEKQVILKSLNENNWNRQNT 438 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+ LGL A +K++ + Sbjct: 439 AKALGLNRRSLYAKMKEYDL 458 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 502 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 126/320 (39%), Positives = 182/320 (56%), Gaps = 3/320 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ + E+ ++ +AP + VL+ GE GTGKEL+A LH S R GP +++NCA Sbjct: 142 EIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVAKALHAGSPRAGGPMVAVNCA 201 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ALNE LL+SELFGHE GAFTGA++R GRF AD G++FLDE+ +Q KLLRVI+ Sbjct: 202 ALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFLDEIGEIAPSIQAKLLRVIQE 261 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++RVGG +P+ V+VR++ ATN DL V G FR DL RL + +PPLRER DI Sbjct: 262 REIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLYYRLNVVAISVPPLRERGQDI 321 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A++F + E GFT A + LL WPGN+REL+N VER+V Sbjct: 322 PLLAQHFLTRFA-EKNRKRIKGFTPAAMDHLLRCPWPGNVRELENAVERAVILSVGEYVT 380 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLD--LREFQMQQEKELLQLSLQQGKYNQKR 304 ++ + + A + + + E+E++ +L+ N+ Sbjct: 381 ERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMALDDVEREVILATLRDTGGNKSE 440 Query: 305 AAELLGLTYHQFRALLKKHQ 324 AA +LG+T LKK+ Sbjct: 441 AARVLGITRATLHKKLKKYG 460 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 127/325 (39%), Positives = 176/325 (54%), Gaps = 6/325 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++G + L + E + +A VLI GE GTGKEL A +H LSSR F+ +NC Sbjct: 140 STIIGRSRQMLNLFEMIEKVAESSATVLIQGESGTGKELAARAIHQLSSRSSKNFVPVNC 199 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ ++LL+SELFGH G+FTGA GRFE AD GTLFLDE+ +Q KLLRV++ Sbjct: 200 AAIPDDLLESELFGHVKGSFTGAYANRIGRFEMADKGTLFLDEIGDMKATLQVKLLRVLQ 259 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E E VG ++ +V+VR++ A+N +L V FR DL RL+ + +PPLR+R D Sbjct: 260 AKEFEPVGSTRSQKVDVRIIAASNKNLDEQVATRDFREDLYYRLSVIPITIPPLRDRRED 319 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ +F Q R+ + L GFT A E L NY WPGN+REL+N+VER + + Sbjct: 320 IPLLINHFQGQFNRD-RRRLVKGFTREALEMLCNYDWPGNVRELENLVERMITMKESGFI 378 Query: 246 PLDDIIIDPFKRR-----PPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 +DD+ R P + +V LP + L E L+ +L + Sbjct: 379 TVDDLPEKYLAPRTVVAPPLSVSGSVPVGKELPPEGICLNSAVDAFENGLIMQALHRTGG 438 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N+K AA LL L LKK + Sbjct: 439 NKKEAAALLNLKRTTLIEKLKKKNL 463 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 497 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 128/325 (39%), Positives = 186/325 (57%), Gaps = 12/325 (3%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + E N++G A S V + + +AP + VLI+GE G GKEL+A+ +HY S R PF Sbjct: 236 VGEQPANIIGNAKSMRVVFKMIDKIAPTNATVLILGESGVGKELVANAIHYKSQRAASPF 295 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I NCAAL E++++SELFGHE GAFTGA GRFE A+ GT+FLDE+ + +Q KL Sbjct: 296 IKFNCAALPESIVESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKL 355 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LR+++ E ERVGG++ ++ +VR++ ATN +L + EG FR DL RL V +PPLR Sbjct: 356 LRILQEKEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLR 415 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+SDI+L+A+YF + ++ + A + L+ Y WPGN+REL+N VER+V Sbjct: 416 ERKSDILLLADYFVEKYN-QMNGKGVRRISTTAIDMLMRYHWPGNVRELENCVERAVILS 474 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + + +E++ P L++ E EL+ +L+ K Sbjct: 475 DDGVIHGYHLPP----------TLQTAESSGTPCAG-PLQQRLDALEYELIVEALKNTKG 523 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N +AA LGLT +KK I Sbjct: 524 NMSKAAMELGLTDRVMGLRVKKFDI 548 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 120/332 (36%), Positives = 180/332 (54%), Gaps = 14/332 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + +G + ++ E V +A VLI+GE GTGKE++A +H+ S R + PF+ +NC Sbjct: 200 EGWIGRSRIMQQISESVHLVAKSRATVLIMGESGTGKEVVAKAIHFNSPRNRRPFVQINC 259 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ E+LL+SELFGHE GAFTGA PG+FE+A GTLFLDE+ VQ KLLRV++ Sbjct: 260 AAIPESLLESELFGHEKGAFTGAHVSRPGKFEQAHEGTLFLDEVGEISPAVQVKLLRVLQ 319 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 +ERVGG++ + V+VR++ ATN +L + + FR DL RL + LPPLR+R+ D Sbjct: 320 ERVVERVGGTKTIPVDVRIIAATNRNLEEAIRKNQFREDLYYRLNVVPIYLPPLRQRKED 379 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ +F + +E + + A L+ + WPGN+REL+N +ER V Sbjct: 380 IPLLVNHFLGRFNQENGRSMT--ISPEAISALIEHDWPGNVRELENTMERLVVMTQADSI 437 Query: 246 PLDDI------------IIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQL 293 + D+ + +P +SL L L E + E+ + Sbjct: 438 DITDVRRTLALFPSTLPHRREVEEKPASRDSGKENGSSLKGESLLLPEAVSELERAKILD 497 Query: 294 SLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 L + + + RAA LLG+T Q + K+ I Sbjct: 498 VLDRTGWIKTRAAALLGITPRQLGYRMMKYGI 529 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 130/319 (40%), Positives = 189/319 (59%), Gaps = 6/319 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++L + + +++ + + +A VLI GE GTGKELIA +HY S R +GPFI +NCA Sbjct: 144 HILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCA 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E+LL+SELFGHE GAFTGAQ G FERA+ GTL LDE+ P+++Q KLLR+++ Sbjct: 204 ALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQE 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ER+GG Q ++V++R++ ATN DL AMV EGTFR DL RL + LPPLR+R DI Sbjct: 264 REFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDI 323 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A +F + E + + A L + WPGNIREL NV+ER+V + Sbjct: 324 SLLANHFLQKFSSENQRDII-DIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIF 382 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 +D+ + E + P +L+E + EK ++ L+Q + N+ R A Sbjct: 383 SEDLPPQIR-----QPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTA 437 Query: 307 ELLGLTYHQFRALLKKHQI 325 +LG++ L+++ I Sbjct: 438 LMLGISRRALMYKLQEYGI 456 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 495 bits (1277), Expect = e-139, Method: Composition-based stats. Identities = 129/311 (41%), Positives = 178/311 (57%), Gaps = 3/311 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++GE+ L + E + +A D VLI GE GTGKEL+A +H LS+R F++LNC Sbjct: 142 NNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKELVARAIHDLSNRSDKNFVALNC 201 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ + LL+SELFGH G+FTGA GRFE AD GTLFLDE+ +Q KLLRV++ Sbjct: 202 AAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTLFLDEIGDMKANLQVKLLRVLQ 261 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ELE VG ++ +V+VR++ ATN +L MV FR DL RL+ + LPPLRER SD Sbjct: 262 SRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFREDLYYRLSVIPIMLPPLRERGSD 321 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + L+ F + R + + GF ++ E L NY WPGN+REL+N+VER V T Sbjct: 322 VPLLLNSFLEKFNRSKQRKV-QGFDKQVMEILSNYDWPGNVRELENLVERLVIIKTTGVI 380 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + D+ R + E +LP L + E L+ +L++ N+K A Sbjct: 381 SIHDLPEKYRGGRTT--TVLHGEPMTLPDDGFCLNSAVEEFENRLILQALEKSGGNKKEA 438 Query: 306 AELLGLTYHQF 316 AELL L Sbjct: 439 AELLNLKRTTL 449 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 495 bits (1277), Expect = e-139, Method: Composition-based stats. Identities = 130/330 (39%), Positives = 189/330 (57%), Gaps = 8/330 (2%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + + ++G++++ EV + + +A VLI GE GTGKELIA+ LH SSR PFI Sbjct: 132 KARAAIIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGASSRRDKPFIK 191 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAA+ LL+SELFG+E GAFTGA PGRFE AD GTLFLDE+ P+ +Q KLLR Sbjct: 192 INCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEIPVEMQVKLLR 251 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 I+ GE ERVGG + +V+VRLV ATN DL A + G FR DL RLA + LP LRER Sbjct: 252 AIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVVPISLPALRER 311 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 SD+ ++A +F + R + + G + A L Y WPGNIREL+N++ER + Sbjct: 312 RSDVPMLARHFVEKYNRRLNKKI-EGIADDAMALLQGYAWPGNIRELENLIERVLLFADG 370 Query: 243 SDYPLDDIIIDPFKR---RPPEDAIAVSETTSLPTLPLDLREFQ----MQQEKELLQLSL 295 D+ + + + + + +PT + L++ + E++L+ L Sbjct: 371 PLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAELERDLIVKKL 430 Query: 296 QQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 ++ N RAA LL ++ + +K+ + Sbjct: 431 EETGGNVTRAARLLQISRKSLQTKMKEFGL 460 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 495 bits (1277), Expect = e-139, Method: Composition-based stats. Identities = 123/320 (38%), Positives = 184/320 (57%), Gaps = 2/320 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++G + V ++ + D +LI+GE GTGKEL+A +HY R + PF+++NC Sbjct: 154 DNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAKAIHYNGHRREKPFVAINC 213 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ LL+SELFGH GAFTGA G+F++A GT+FLDE+ T P+ +Q KLLRV++ Sbjct: 214 GAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGTIFLDEIGTMPLHLQMKLLRVLQ 273 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+E+VG S+ ++++VR++ ATN +L V +G FRADL RL + LPPLRER D Sbjct: 274 EQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYYRLNVIPIALPPLRERRED 333 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A YF + C E+ PL T A L NY WPGN+REL+NV+ER+V + Sbjct: 334 IALLARYFLQKTCTEMNQPLI-SITPGAMNCLENYHWPGNVRELENVIERTVTLTDSIAI 392 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D+ + ++ +S L +D+ E E+ L++ ++ + RA Sbjct: 393 GKSDLPANISGSCCEDEDPQIS-CPRLTESGMDMPEVIAGIERCLIKSAMGLSGGVKARA 451 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LL + +K+ I Sbjct: 452 ASLLNIKRTTLVEKIKRLGI 471 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 495 bits (1276), Expect = e-139, Method: Composition-based stats. Identities = 126/318 (39%), Positives = 181/318 (56%), Gaps = 2/318 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ +L + L+ D LI+GE GTGKEL+A +H SSR + PFI +NCAA Sbjct: 2 IIGQSIQIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQKSSRAEKPFIPVNCAA 61 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + LL+SELFGHE GAFTGAQ GRFE A+ GT+FLDE+ P+ +Q K+LRVI+ Sbjct: 62 IPSELLESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQEK 121 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ER+GG++P+QVNVR++ ATN DL V EG FR DL RL V +PPLRER+ DI Sbjct: 122 TFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDIP 181 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+ EYF + + L + LNY WPGN+REL+N++ER + + + Sbjct: 182 LLCEYFINKFSHKFGYSL--QIKPEVMQIFLNYTWPGNVRELENLIERLYVLNEGGNINI 239 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 DI + + + + +DL E + EK+L+ +L + + RAA+ Sbjct: 240 KDIPERIRFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHGWIKSRAAK 299 Query: 308 LLGLTYHQFRALLKKHQI 325 L + +K+ I Sbjct: 300 YLNINRTTLIEKMKRLNI 317 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 128/323 (39%), Positives = 183/323 (56%), Gaps = 11/323 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 Y D + G+ +EV + + A D VLI GE G GKE+ A +HYLS R PF+++ Sbjct: 418 YLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAI 477 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLR 122 NCAA+ ENLL+SELFG+E GAFTGA++ G+ E+ADGGTLFLDE+ P+ +Q KLLR Sbjct: 478 NCAAIPENLLESELFGYEEGAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLR 537 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 I+ E ER+G + P +V++R++ ATN L +V EG FR DL RL + +PPLRER Sbjct: 538 FIQNREFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRER 597 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+ F + C K+ T A L+NY WPGNIREL+NV+ER+ Y Sbjct: 598 RDDIPLLVNRFMNEFCERRKM-APKIVTSEAMNILMNYSWPGNIRELQNVIERAYYLAEG 656 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + + P + + + T +E + EK+L+ L+ YN+ Sbjct: 657 NLIKPEHL---------PAQLTSKALSGERITKITTFKEAVAEVEKKLIIEGLKATNYNK 707 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 A+LLG+ +K++ I Sbjct: 708 LACAKLLGIPRATLYQKIKEYGI 730 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 494 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 123/327 (37%), Positives = 186/327 (56%), Gaps = 4/327 (1%) Query: 1 MAEYK--DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQG 58 +AE++ D+L+G++ +F VL+ V + + +L+ GE GTGKE++A +H +R Sbjct: 134 LAEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGKEMVARAIHKHGNRADK 193 Query: 59 PFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQE 118 PF+++NCAA+ E LL+SE+FGH GAFTGA GRF++AD GTLFLDE+ P+ +Q Sbjct: 194 PFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEVGDMPLALQA 253 Query: 119 KLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPP 178 K+LR ++ +E VG + +V+VR++ ATN +L V FR DL RL + LP Sbjct: 254 KILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPA 313 Query: 179 LRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 LRER DI L+A +FA + + GF+ A + + +Y WPGNIREL+N VER+ Sbjct: 314 LRERVEDIALLARHFAHSLGATAGKRI-SGFSPEALQAMASYAWPGNIRELQNCVERATI 372 Query: 239 RHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQG 298 D+ F + + + + + P +P DL + EK + +LQQ Sbjct: 373 VATGQVIEEKDLPGYLFGPQA-QGTESSAAISVGPQVPSDLEAALAEVEKAYILAALQQS 431 Query: 299 KYNQKRAAELLGLTYHQFRALLKKHQI 325 Q AA+L+G++ F LKK I Sbjct: 432 NGVQAAAAQLIGISERSFWYRLKKLGI 458 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 124/318 (38%), Positives = 185/318 (58%), Gaps = 14/318 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ + E+ + +A + VLI GE GTGKEL+A +H S R PFI ++C Sbjct: 135 EIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKNSLRKSKPFIIVDCT 194 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 + ENLL+SELFGHE GAFTGA +R G E A+ GT+FLDE+ PM++Q+KLLR ++ Sbjct: 195 TIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIGELPMLLQKKLLRFLQE 254 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++R+G +Q ++V+VR++ ATN DL + EG+FR DL RL + LPPLRER+ DI Sbjct: 255 KEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVVRINLPPLRERKEDI 314 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F + +E P+ P L+NY WPGNIREL NV+ER+V + Sbjct: 315 PLLVNHFLNKFSKENNKPI-PQLEPEVMNALINYYWPGNIRELANVIERAVVLSPSGLIS 373 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + P + T + +L ++ EK L+ +L +NQ +AA Sbjct: 374 IKHL---------PRRIQENTGWTIIKENTFNL----LEVEKALILKALNSTGWNQTKAA 420 Query: 307 ELLGLTYHQFRALLKKHQ 324 E+LG++ Q R +K H Sbjct: 421 EILGISRKQLRTKMKHHG 438 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 132/319 (41%), Positives = 181/319 (56%), Gaps = 12/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + EV V +A VL++GE G GKEL+AS LHY S GPFI NCA Sbjct: 241 NIIGNSKPMQEVYAMVHKVASTKATVLLLGESGVGKELVASALHYNSPVADGPFIKANCA 300 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E L +SELFGHE GAFT A H G FE+A GGT+FLDE+ + Q KLLRV++ Sbjct: 301 ALPEALAESELFGHERGAFTSAIATHKGYFEQASGGTIFLDEVGELSLPTQAKLLRVLQE 360 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVGG++P++V+VR++ ATN +L MV EGTFR DL RL + +PPLR+R SD+ Sbjct: 361 RTFERVGGAKPVKVDVRIIAATNRNLAEMVAEGTFREDLFYRLNVFPITIPPLRDRGSDV 420 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +A++F EI P+ + A L++Y WPGN+REL+NV+ERSV Sbjct: 421 ITLADHFVTTYSAEIGKPI-KRISTPAINMLMSYHWPGNVRELENVIERSVILAEEGVIH 479 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 D+ P + P E S T L + E E++ +L+ N +AA Sbjct: 480 GYDLP--PSLQTPTETGTGFSGT---------LEDRVTAVEYEMIVEALKASNGNVGQAA 528 Query: 307 ELLGLTYHQFRALLKKHQI 325 LGLT +++H + Sbjct: 529 TTLGLTRRMLGLRMERHGL 547 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 130/324 (40%), Positives = 181/324 (55%), Gaps = 19/324 (5%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + + ++G + + +AP D VLI GE GTGKEL+A +H SSR PF+ Sbjct: 420 SAGFEGMIGRDYRMQTIYRLIQDVAPTDVTVLIQGESGTGKELVAKAIHARSSRRDNPFV 479 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NC+A LL+SELFGHE GAFTGA ++ PGRFE+A GGT+FLDE+A + Q KLL Sbjct: 480 VINCSAYPATLLESELFGHEKGAFTGAIRQRPGRFEQARGGTVFLDEIAEVDLSAQVKLL 539 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ + ER+GG + ++V+VR++ ATN DL V G FR DL RL + LPPLRE Sbjct: 540 RVLQTQKFERLGGEKSIEVDVRILAATNKDLLEEVKAGRFREDLYYRLDVVPINLPPLRE 599 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R +D L+A +F + ++ + A LL+Y WPGN+REL+NV+E++V Sbjct: 600 RGNDTALLARHFLERFAA-VQDKRINEISSSAMRALLDYSWPGNVRELENVMEQAVVLCK 658 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 L+D+ RP R+ QEK LL +L+ +N Sbjct: 659 GETIALEDLPDKLQGARPAR------------------RKTIEDQEKNLLLETLEACGWN 700 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 +K AAE LG+ A LKKH I Sbjct: 701 KKMAAERLGIGRSTLYAKLKKHGI 724 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 119/318 (37%), Positives = 178/318 (55%), Gaps = 4/318 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 +LG + + + + +A D V+I GE GTGKEL+A +H+ S+R P I +NC A Sbjct: 155 MLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGKELVARAIHFNSNRNNFPLIPVNCGA 214 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E+LL+SELFGHE GAFTGA + GRFE A GG++FLDE+ +Q K+LRVI+ Sbjct: 215 IPEDLLESELFGHEKGAFTGAIRNRLGRFELAQGGSIFLDEIGDMSPALQVKVLRVIQEK 274 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 + ER+GG + + +VR++ AT+ +L V E FR DL R+ + LP LRER +DI Sbjct: 275 QFERIGGVKTINADVRIIAATHQNLELAVTEKRFREDLFYRINVIPIHLPALRERGADIA 334 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 ++A +F + + K FT A +L+Y WPGN+REL+N++E V + L Sbjct: 335 ILANHFLQKFA-QSKKKEVTRFTPEAIACMLHYPWPGNVRELENLIEMLVVMKEDGEIKL 393 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 +D+ P K R + + +P +D + Q EK +L +L + + RAA+ Sbjct: 394 EDL---PSKIRQFKKETQSFKEYQIPEEGIDFNDVVYQFEKNILLKALAKTNGVKNRAAK 450 Query: 308 LLGLTYHQFRALLKKHQI 325 LL L LK+ I Sbjct: 451 LLNLNRTTLVEKLKRLNI 468 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 122/322 (37%), Positives = 184/322 (57%), Gaps = 11/322 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G++ + + + + + +AP + VLI GE GTGKE++A +H+ S R P++++NCA Sbjct: 141 NIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKSIHFNSHRKDAPWVAVNCA 200 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E++L+SELFGHE GAFTGA GRFE ADGGTLFLDE+ +Q KLLRV++ Sbjct: 201 ALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQE 260 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVGG +P++V++RL+ ATN DL V FR DL RL +QLPPLRER+ DI Sbjct: 261 KTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDI 320 Query: 187 MLMAEYFAIQMCR-EIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 L+ ++F + Y WPGN+REL+NV+ER++ + Sbjct: 321 PLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVRELENVIERAIILCNSDAI 380 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLD--LREFQMQQEKELLQLSLQQGKYNQK 303 ++D+ P E +VS T + +P+D L E E+ +++ ++ Q Sbjct: 381 SVNDL--------PRELTRSVSNTLHMEGIPVDATLYETLSMVEQAMIKRAMLMSDNVQS 432 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AA++LG+ +KK + Sbjct: 433 HAAQILGIGKSGLNQKIKKFGL 454 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 140/328 (42%), Positives = 186/328 (56%), Gaps = 11/328 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G+ EV + ++ +AP L++GE GTGKEL+A +H R PFI LNCA Sbjct: 203 NIIGQCKRIQEVYDYIAKVAPSRATALLLGESGTGKELVARAIHQAGPRAGEPFIKLNCA 262 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL ENLL+SEL GHE GAFTGA + GRFE ADGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 263 ALPENLLESELLGHEKGAFTGAVGQKKGRFELADGGTLFLDEIGELPLALQAKLLRVLQE 322 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ER+GGS+ + V+VR++ ATN L A V EG FRADL RL V LPPLRER DI Sbjct: 323 RTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVFRADLYYRLNVVPVVLPPLRERREDI 382 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ ++F + R + + F L Y WPGN+REL+N+VER V Sbjct: 383 PLLLDHFLRESNRHNRRRV--KFAAAVIRRLNEYSWPGNVRELQNLVERLVIMVDGEVVN 440 Query: 247 LDDII-----IDPFKRRPP----EDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQ 297 LDD+ DP RR P + AV S + + EKE + +L++ Sbjct: 441 LDDLPAYLADPDPANRRCPRGFADQPAAVLPAPSWVDQGMAAGRSLWEMEKEEVLAALRR 500 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 + Q RAA LG+T Q ++K+ I Sbjct: 501 HGWVQTRAARDLGITPRQMGYRIRKYAI 528 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 127/322 (39%), Positives = 190/322 (59%), Gaps = 14/322 (4%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 ++ + ++G++ + ++L +++ +AP D VLI G+ GTGKEL+A LH S+R P Sbjct: 134 VSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVARALHASSARSDKPL 193 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 ++LNCAALNE+LL+SELFGHE GAFTGA KR GRF ADGGTLFLDE+ ++Q +L Sbjct: 194 VTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRL 253 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LR I+ E++RVG +Q L V+VRL+ AT+ DL + G FR DL RL ++ P LR Sbjct: 254 LRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYYRLNVVTIETPSLR 313 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R DI L+AE+F + GFT +A + L++Y WPGNIREL+N +ER+V Sbjct: 314 QRREDIPLLAEHFLQRFAAR-NRKAVKGFTPQAMDLLIHYAWPGNIRELENAIERAVVLL 372 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 ++ + ++P +P + ++ EKE++ +L++ Sbjct: 373 TGEYISERELPL-------------AIANQAMPLMPAQAIQPLVEVEKEVILAALEKTGG 419 Query: 301 NQKRAAELLGLTYHQFRALLKK 322 N+ AA LG+T A L + Sbjct: 420 NKTEAARQLGITRKTLLAKLSR 441 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 134/338 (39%), Positives = 186/338 (55%), Gaps = 19/338 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++G + + EV QV AP +L+ GE GTGKE+IA +HYLS R GPFI +NC Sbjct: 201 DNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVIARAIHYLSPRKDGPFIKVNC 260 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL+E LL+SELFGHE GAFTGAQ GRFE A GGTLFLDE+ Q KLLRV++ Sbjct: 261 AALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLFLDEIGEISPAFQAKLLRVLQ 320 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVGGS+ ++V+VRLV ATN DL V +G FRADL R+ + +PPLRER D Sbjct: 321 EREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINVVSIFIPPLRERRED 380 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + E+F + E + + + +A + ++N WPGN+REL+N VER+ Sbjct: 381 IPYLVEHFLEKFRVENQRAMV-AMSPQAMKVMMNCYWPGNVRELENCVERTATMMRGDLI 439 Query: 246 PLDD-----------IIIDPFKRRP----PEDAIAVSET---TSLPTLPLDLREFQMQQE 287 ++ +P +++P P + I+ E Sbjct: 440 TEVHFSCQQNKCLTKVLHEPGQQQPVVVVPLERISAPYGAIFAEWDGQGQATGAAPPTSE 499 Query: 288 KELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +E L +++Q + Q +AA L ++ Q L+K I Sbjct: 500 RERLIWAMEQCGWVQAKAARALNISPRQMGYALQKFNI 537 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 492 bits (1268), Expect = e-138, Method: Composition-based stats. Identities = 123/325 (37%), Positives = 181/325 (55%), Gaps = 10/325 (3%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + ++G + EV + + +A D VLI GE GTGKEL+A +HY S+ QGP + Sbjct: 141 DKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGKELVAETIHYNSTFSQGPLVK 200 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAAL E LL+SELFGHE G+FTGA ++ GRFE A GT+FLDE+ + Q KLLR Sbjct: 201 VNCAALPETLLESELFGHEKGSFTGADRQRKGRFELAHKGTIFLDEIGEMTLGTQRKLLR 260 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E ERVGGS ++V+ R++ ATN L V G FR DL RL + LPPLRER Sbjct: 261 VLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFREDLFYRLNVIHIHLPPLRER 320 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + DI L+ +YF + R K +E A + L+ + WPGN+REL+N +ER+V Sbjct: 321 KEDIPLLVDYFLQKH-RYHKDGPPASISEEAIKVLMEHDWPGNVRELENTIERAVILAQG 379 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 ++ + D V + T L E E +++ +L++ K + Sbjct: 380 GVITTHHLVFSQIRTGRNIDLSEVIDKTR------SLDEAMRIIESKIILEALEKAKGDH 433 Query: 303 KRAAELLGLTYHQFRALLK---KHQ 324 AAE+L ++ + + L+ K++ Sbjct: 434 ALAAEILDISESELKRKLRTADKYR 458 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 492 bits (1268), Expect = e-138, Method: Composition-based stats. Identities = 118/324 (36%), Positives = 177/324 (54%), Gaps = 16/324 (4%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A K L+ +++ + VL+ +A VL+ GE GTGK ++A +H SSR PF+ Sbjct: 223 ASNKSRLITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSSRRDKPFV 282 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NCAA+ +NLL+SELFG+ GAFTGA K PG+ E ADGGTLFLDE+ P +Q KLL Sbjct: 283 KINCAAIPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPTYLQSKLL 342 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 +I+ E ER+G ++ +V+VR++ ATN DL +V EG FR DL RL +++P LRE Sbjct: 343 HLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPALRE 402 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R+ DI + YF ++ + G + A LLNY +PGNIREL+N++ER+V Sbjct: 403 RKEDIPFLINYFIDLYSKQYNKHI-KGISPEAVRLLLNYDYPGNIRELENIIERAVILAK 461 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 + D+ + + E EK+ + L+ +N Sbjct: 462 GKFIEVSDLPDEIVYNTKILTQNDLDEEID---------------EKQKILRVLESVNWN 506 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 + +AA++L + LKK+ + Sbjct: 507 KSKAAKILNIDRVTLWRKLKKYGL 530 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 492 bits (1268), Expect = e-138, Method: Composition-based stats. Identities = 127/320 (39%), Positives = 182/320 (56%), Gaps = 12/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 N++G + EV E + +A VLI+GE G GKEL+A+ +HY S + ++ NC Sbjct: 217 SNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVANAIHYNSPNAEAALVTSNC 276 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A L ENL +SELFGHE G+FTGA H G FE+ADGGT+FLDE+ VQ KL+RV++ Sbjct: 277 APLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVGELSPTVQAKLVRVLQ 336 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ERVGGS+P++V+VR++ ATN +L MV +GTFR DL RL + +PPLRER SD Sbjct: 337 NRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLNVFPITVPPLRERGSD 396 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 ++ +A++F RE + + A L++Y WPGN+REL+NV+ER+V Sbjct: 397 VIALADHFVSAFSRENGKNV-KRISTPALNMLMSYHWPGNVRELENVMERAVILS----- 450 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 DD +I + P S T L L E E E++ +L+ + A Sbjct: 451 --DDDVIHSYNLPPSLQTSKESGTA----FGLTLEEKIKAVECEMIVEALKNSSGHIGEA 504 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+ LGL ++++ I Sbjct: 505 AKELGLARRMLGVRMERYGI 524 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 492 bits (1268), Expect = e-138, Method: Composition-based stats. Identities = 120/319 (37%), Positives = 184/319 (57%), Gaps = 12/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + + + +A L++GE G GKEL+AS +H+ S R + PFI NCA Sbjct: 236 NIIGNTKPMVSLYSMIDKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEKPFIKFNCA 295 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL EN+++SELFGHE GAFTGA GRFE A+ GT+FLDE+ + VQ KLLR+++ Sbjct: 296 ALPENIVESELFGHEKGAFTGALATRHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQE 355 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGGS+ ++V+VR++ ATN +L ++ +G FR DL RL + +PPLRER++DI Sbjct: 356 KEFERVGGSKTIKVDVRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTDI 415 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +L+A+YF + + + A + L+ Y WPGN+REL+N +ER+V + Sbjct: 416 LLLADYFVEKYN-KANQKGVRRISTTAIDMLMRYHWPGNVRELQNCIERAVILSEDNVIH 474 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + +E++ P L++ EKE++ +L++ + N RAA Sbjct: 475 GYHLPP----------TLQTAESSGTPYTG-SLQQKLDAIEKEMIIEALKRTQGNMSRAA 523 Query: 307 ELLGLTYHQFRALLKKHQI 325 LGL+ +KK I Sbjct: 524 MQLGLSERIMGLRIKKFNI 542 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 492 bits (1268), Expect = e-138, Method: Composition-based stats. Identities = 126/329 (38%), Positives = 178/329 (54%), Gaps = 11/329 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + S L+VL QV +A D VLI GE GTGKELIA +H S R + P + +NC Sbjct: 655 EIVGNSPSLLQVLRQVDRVASTDSTVLICGETGTGKELIARAIHDRSPRRERPLVKVNCG 714 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A++ L++SELFGH GAFTGA GRFE ADGGT+FLDE+ P Q KLLRV++ Sbjct: 715 AISTGLVESELFGHVKGAFTGAIANREGRFELADGGTIFLDEVGELPPETQVKLLRVLQE 774 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E E +G ++ ++V+VR++ ATN DL MV EG FR+DL RL + +PPLR+R +DI Sbjct: 775 QEFEPIGSTKTVKVDVRVIAATNRDLETMVREGKFRSDLFYRLNVVPLTMPPLRQRANDI 834 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F + R++ L E L Y WPGNIREL+NV+ER+V S Sbjct: 835 PLLTMFFLEKFARKLGKSLGQ-IAEETMARLCQYPWPGNIRELQNVIERAVVLSTGSLLT 893 Query: 247 LDDIIIDPFKRR-------PPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGK 299 ++ + PE A+ + L E++ + LQQ Sbjct: 894 VEKGALPGATGVMAQGPGWTPERAMIDAAEPLSTPLGATSGNALEDVERQHIASVLQQTN 953 Query: 300 YNQ---KRAAELLGLTYHQFRALLKKHQI 325 + AA++L L R+ ++K I Sbjct: 954 WRIEGANGAAKILNLQPSTLRSRMQKLGI 982 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 125/317 (39%), Positives = 183/317 (57%), Gaps = 10/317 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ E+ + + +A VLI GE GTGKELIA +H S R GPFI +NCAA Sbjct: 168 IIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPFIKVNCAA 227 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L+E +L+SELFGH GAFTGA PGRFE A GGTLFLDE+ +Q KLLRV++ Sbjct: 228 LSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQVKLLRVLQEE 287 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG++ L+V+VR++ ATN DL A ++ GTFR DL RL + LPPLRER DI Sbjct: 288 EFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLRERREDIP 347 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+ F + E + G ++ A+ L+N+ +PGNIREL+N++E +V + Sbjct: 348 LLISSFLSRYNAEFGKNVV-GLSQEAQNILMNHSYPGNIRELQNIIEHAVLLSTGRTIGV 406 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 ++ P D + E +S + L E +++ ++++ + N +AA+ Sbjct: 407 REL---------PRDLAPIPEESSFADVALSRSNALRTMEDVMIRKAVEKTQGNMSQAAK 457 Query: 308 LLGLTYHQFRALLKKHQ 324 LLG+ L++ Sbjct: 458 LLGIGRSTLWRKLREMG 474 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 140/323 (43%), Positives = 186/323 (57%), Gaps = 16/323 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G++ V + + ++ VLI GE GTGKEL+A +HY S R PF+++ C Sbjct: 167 NIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELVARAIHYNSDRHDRPFVAIYCG 226 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENLL+SELFGHE GAFTGA ++ G FE ADGGTLFLDE+A P M+Q KLLRVI+ Sbjct: 227 AIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTLFLDEIAELPPMMQVKLLRVIQE 286 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E +VGG++ L+V+VRLV ATN DL V E FR DL RL V LPPLR+R DI Sbjct: 287 HEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDLYYRLNVIQVGLPPLRDRREDI 346 Query: 187 MLMAEYFAIQMCREIKLPLFPGFT----ERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 L+ +F ++ PGF+ + L+Y WPGNIREL+N VER V G Sbjct: 347 PLLVSHFLQKL--------TPGFSTTIPDGVMRRFLDYHWPGNIRELENTVERCVVLGGK 398 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + D + D + T LP LDL ++ EK++L +L + + Sbjct: 399 GEITEDSLPPHMLCISGTGDQ----QLTELPEEGLDLDDYLGAIEKDILLKALDRTGGVR 454 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 KRAAELL +T+ R L K I Sbjct: 455 KRAAELLHITFRSIRYRLAKFGI 477 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 131/329 (39%), Positives = 187/329 (56%), Gaps = 11/329 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++GE+ E+ + +A VLI GE GTGKEL+A LH S R PFI +NCA Sbjct: 148 GIIGESPPIQELYAILERVADTPTTVLISGESGTGKELVARALHENSGRRDRPFIKVNCA 207 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ++L++SELFG+E GAFTGA PGRFE A GGTLFLDE+ P +Q KLLRV++ Sbjct: 208 AIPKDLMESELFGYERGAFTGAVASKPGRFELASGGTLFLDEIGEIPNEMQVKLLRVLQE 267 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG + + V+VRLV ATN DL + GTFR DL RL + LP LR+R SDI Sbjct: 268 SEFERVGGIKTIHVDVRLVAATNRDLKREIAAGTFREDLFYRLNVVPIALPALRDRRSDI 327 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +F + +K + A E L ++ WPGNIREL+NVVER++ + Sbjct: 328 PHLCAHFVAKFNARLKKSI-ESIEPEALERLASHAWPGNIRELENVVERALLFADGARIR 386 Query: 247 LDDIIID------PFKRRPPEDAIAVSETTSLPTLPLDLRE----FQMQQEKELLQLSLQ 296 LDD+ + A A ++T++ P+ P L+E + E++L++ +L+ Sbjct: 387 LDDLPEEIRGGATSAPGAALPLAAAAADTSAAPSTPDGLKEQVKAAMSKLERDLIERALK 446 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKHQI 325 Q N AA LL ++ + +K+ + Sbjct: 447 QTHGNVTHAARLLKISRKGLQLKMKELNL 475 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 123/322 (38%), Positives = 190/322 (59%), Gaps = 6/322 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++ ++ + ++L+QV +A D VLI GE GTGKE+IA +H LS R P + +NCA Sbjct: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ +LL+SELFGH+ GAFTGA H GRFE ADGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ER+GGS+ + VNVR++ ATN DL MV + FR+DL RL ++LPPLR+R DI Sbjct: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A++F +M R + + A L+++ WPGN+REL+NV+ER+V + Sbjct: 526 PLLAKHFTQKMARHMNRAID-AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK--- 303 L + + + P + + ++ L E ++E++ + L++ Sbjct: 585 L-HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPE-NDEEERQRIVQVLRETNGIVAGPR 642 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AA LG+ + +++ I Sbjct: 643 GAATRLGMKRTTLLSRMQRLGI 664 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 490 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 122/318 (38%), Positives = 183/318 (57%), Gaps = 12/318 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +L+ +++ ++ + + +AP D VLI GE GTGKE++A +H LS+R P + ++C Sbjct: 144 DLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKEVVARAIHALSTRRFHPMVPVHCG 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E LL+SELFGHE GAFTGAQ R G+FE A+GGT+FLDE+ + Q LLRV++ Sbjct: 204 ALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGTVFLDEIGDISLKTQTDLLRVLQE 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ RVGG+QP++V+ R+V ATN DL ++ EG FR DL RL ++LPPLR+R DI Sbjct: 264 REIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRPDLFYRLNVFRIELPPLRDRREDI 323 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F + ++ + + A L Y WPGN+REL+N VER++ + Sbjct: 324 PLLVNHFTKKFAEQMNKRVTRVASP-AMNMLQQYPWPGNVRELENAVERAMVVAQEPELR 382 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 D ++ A A +T+ P L + EKE + L + +NQ RAA Sbjct: 383 ETDFVLKV-------KAAATMSSTNGTGTPKTLEDI----EKEHILHVLDETNWNQTRAA 431 Query: 307 ELLGLTYHQFRALLKKHQ 324 E+L + +K++ Sbjct: 432 EMLDIDRVTLHHKIKRYG 449 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 490 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 123/330 (37%), Positives = 190/330 (57%), Gaps = 11/330 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 K+ + + ++ +A + VLI GE GTGKE+ A +H S+R G F+++N Sbjct: 134 KNTAIFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYIHENSNRSSGAFVAVN 193 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAAL ENL++SELFG+E GAFTGA R PG+FE ADGGT+ LDEL P+ +Q KLLRV+ Sbjct: 194 CAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLDELGEIPLHLQAKLLRVL 253 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ER+GG++P ++NVR++ TN L V+EG FR DL RL ++LPPLRER+ Sbjct: 254 QEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYYRLNVISIELPPLRERKE 313 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DIM +A +FA + + T+ A + LL+Y WPGN+REL++ +ER+V Sbjct: 314 DIMELATFFAEKYAQINGKGSCK-MTDDAVKALLDYDWPGNVRELEHTIERAVVLCRDGV 372 Query: 245 YPLDDIII----------DPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLS 294 ++ + D + + T + +D + E+EL+ + Sbjct: 373 ISERNLFLHGITINQFMTDKQELAAADSYTGCETTEDSVSAGIDFAGTIAEMERELIIKT 432 Query: 295 LQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 L++ N+ +AA++LG+T R L +++ Sbjct: 433 LKETGGNRTKAADMLGITVRTLRNKLNEYK 462 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 490 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 127/321 (39%), Positives = 184/321 (57%), Gaps = 8/321 (2%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 D ++ + + + +A VL+ GE GTGKEL+A +H LS R P I++N Sbjct: 142 TDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKELLARLIHQLSPRSTRPIITVN 201 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C AL E+L++SELFGHE GAFTGA R GRFE ADGGTLFLDE+ M VQ KLLR + Sbjct: 202 CGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGTLFLDEIGELTMPVQVKLLRFL 261 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E +RVGG+ ++ +VR++ ATN DL MV E FR DL RL V+ +PPLRER Sbjct: 262 QEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFREDLYYRLNVVVMSIPPLRERRE 321 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI + ++F + E + G + AR+ L+ Y +PGN+REL+N++ER+V Sbjct: 322 DIPALIDHFLERFAAENGKKI-SGISSEARDLLMKYDYPGNVRELENIIERAVVIARNEI 380 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 ++D+ ED + + LR EK+++Q ++++ +Q R Sbjct: 381 IYMEDLPFR-------EDTLVATSGGVPEEGEGRLRGAIENLEKQMIQDAMEKAGDHQTR 433 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AAE+LGL+ R LKK+ + Sbjct: 434 AAEMLGLSERMLRYKLKKYGL 454 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 125/320 (39%), Positives = 190/320 (59%), Gaps = 17/320 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + +G++ + + + + + +A D VL++GE G GK LIA +H LS R PFIS+NC Sbjct: 195 EGFVGKSEAIITLKDTIQKIAMTDSTVLLLGESGVGKTLIAKAIHTLSERKDKPFISVNC 254 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ E LL++ELFG+E GAFTGA G+FE A+GGT+FLDE+ P+ Q KLLRVI+ Sbjct: 255 AAIPETLLEAELFGYEKGAFTGAVHSKKGKFELANGGTIFLDEIGELPLQSQSKLLRVIQ 314 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ELE++G + + VNVR++ +TN DL +MV G FR DL RL +++P LRER+ D Sbjct: 315 EKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEFREDLYYRLNVIPIRVPALRERKED 374 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ ++F + + K + + A E L+NY WPGNIREL+N++ER V D Sbjct: 375 IPLLVKHFLDKFNKHYKKHI--NIEKEAMEALVNYNWPGNIRELENLIERLVVI-NNKDI 431 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 +D+++ + + L D+ EKE ++ +L++ Y + +A Sbjct: 432 TKEDVLL--------------ATKINSNKLQTDIPSIIESTEKEAIKKALEKCGYVKSKA 477 Query: 306 AELLGLTYHQFRALLKKHQI 325 A++LGLT Q +KK+ I Sbjct: 478 AKILGLTLRQLDYRIKKYNI 497 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 123/311 (39%), Positives = 178/311 (57%), Gaps = 5/311 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++GE++ L + E + +A D VLI GE GTGKEL+A +H LS+R F+ +NC Sbjct: 142 NNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKELVARAIHDLSNRATKNFVPVNC 201 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ ++LL+SELFGH G+FTGA GRFE AD GTLFLDE+ +Q KLLRV++ Sbjct: 202 AAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTLFLDEIGDMKPNLQVKLLRVLQ 261 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ELE VG ++ +V+VR++ ATN +L +V FR DL RL+ + LPPLRER++D Sbjct: 262 NKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFREDLYYRLSVIPITLPPLRERKTD 321 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ F + R + + F + + L N+ WPGN+REL+N+VER V G+ Sbjct: 322 IPLLLNNFLEKFNRNKQRKV-QSFDKNTMDILCNFDWPGNVRELENLVERLVILKGSGTI 380 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D+ + + SE +LP L E +L+ +L++ N+K A Sbjct: 381 TFQDLPEKYRGIK----SAPKSERLTLPDTGFCLNSAVEDFENQLILQALEKTGGNKKEA 436 Query: 306 AELLGLTYHQF 316 A LL L Sbjct: 437 ATLLNLKRTTL 447 >UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUD7_PERMH Length = 456 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 131/329 (39%), Positives = 197/329 (59%), Gaps = 5/329 (1%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + +Y +++G + E+ + +AP D PVLI GE GTGKEL+A + LS R PF Sbjct: 129 LCQYLCSIIGSSPQLREICKLAGEVAPTDLPVLITGETGTGKELLARGIWKLSKRSNKPF 188 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I++NCAA+ ENLL+SELFG+E GAFTGA+K G+FE ADGGT+FLDE+ P+ Q KL Sbjct: 189 IAINCAAIPENLLESELFGYEKGAFTGAEKTKEGKFELADGGTIFLDEIGELPLSAQSKL 248 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ G RVGG++ ++V+VR++ ATN DL MV +G FR DL RL + LPPLR Sbjct: 249 LRVLQEGTFYRVGGNKEIKVDVRVMAATNRDLEDMVAKGKFREDLYYRLNLIHLHLPPLR 308 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DI + E + +++ + G ++ E L + RW GNIREL+N V RS+ Sbjct: 309 ERKEDIPYIVECIVNKYNQKLSKSIA-GASKEYMEVLKDQRWEGNIRELENTVVRSMILC 367 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTL----PLDLREFQMQQEKELLQLSLQ 296 + ++D+ KR P+ E L + E + + +K ++Q +L+ Sbjct: 368 RDNILTVNDLTFLREKRVKPQIEDNFEEILKNRVLASLEEGSIEEIKEKIDKIIVQTALE 427 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKHQI 325 K+NQ +A++LLG+ R ++K+ + Sbjct: 428 YTKHNQVKASQLLGINRATLRKKIQKYGL 456 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 130/320 (40%), Positives = 186/320 (58%), Gaps = 10/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G++ L+VL+ V P + VLI GE GTGKELIA +HY S R PFI++NC Sbjct: 140 DGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIARAIHYNSPRKDKPFIAINC 199 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ + L++SELFG+E GAFTGA R G E AD GTLFLDE+A P+ Q KLLRV++ Sbjct: 200 AAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFLDEIAEIPLSTQSKLLRVLQ 259 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ ++G +V+VR++ ATN +L V + FR DL RL V++PPLRER+ D Sbjct: 260 DKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLYYRLKVITVEIPPLRERKED 319 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + +F + +E + G E+A E LLNY WPGNIREL++V+ER++ Sbjct: 320 IPDLVHFFIEKYSKEFGKRVN-GIEEKALEALLNYSWPGNIRELESVIERAIIICEKDKI 378 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 +DI + P +P ++ E EKEL++ +L + + +A Sbjct: 379 TFNDIQDELRVITPKNLF-----DIDIPDEGINYEEL----EKELIKKALIKSNFVIAKA 429 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LLG++Y F LKK + Sbjct: 430 ARLLGMSYDTFWYRLKKFGL 449 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 489 bits (1260), Expect = e-137, Method: Composition-based stats. Identities = 130/318 (40%), Positives = 181/318 (56%), Gaps = 11/318 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +++GE+ + + + A VLI+GE GTGKELIA LH S R PFI ++C Sbjct: 143 HDIIGESPQLQGIYDVIRRAAGTRATVLILGESGTGKELIAQALHQESPRKDKPFIRVHC 202 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL+ENLL+SELFGHE G+FTGA R GRFE ADGGTLFLDE+ VQ KLLRV++ Sbjct: 203 AALSENLLESELFGHEKGSFTGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQ 262 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVGG+Q L+V+VR+V AT+ DL A V G FR DL RL V LPPLR+R+SD Sbjct: 263 QREFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSD 322 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + + +F + + G + LL++ WPGNIREL+N +ER+V + Sbjct: 323 VPALVNHFLEKYSDSYGKQV-RGLAPGTLQALLSHDWPGNIRELENAIERAVVLAQGQEL 381 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 DD+ RP + + E+E + +L+ + + RA Sbjct: 382 STDDLPPVLRGPRPHGTSTGALIPGA----------TLAAIEREAILRTLEMVQGSTSRA 431 Query: 306 AELLGLTYHQFRALLKKH 323 AE+LG++ + + LK++ Sbjct: 432 AEVLGISVRKIQYRLKEY 449 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 489 bits (1259), Expect = e-137, Method: Composition-based stats. Identities = 129/342 (37%), Positives = 194/342 (56%), Gaps = 20/342 (5%) Query: 3 EYKDNL-LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 E ++ + +G + + + + + + +AP D VLI GE GTGKE++A + S R FI Sbjct: 136 EDEEGILVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVAREFYRRSPRRSQAFI 195 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NCAA++ENL++SE FGHE GAFTGA +R GRFE A GTL LDE++ P +Q KLL Sbjct: 196 KVNCAAISENLIESEFFGHERGAFTGATERREGRFELAHQGTLLLDEVSEIPANLQAKLL 255 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ E ERVGGS+ ++VNVR++ +N DL V +G FR DL RL V +P LRE Sbjct: 256 RVLQEREFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLYYRLNVFPVHVPALRE 315 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI L+A++F + R+ + + GF + AR L+ YRWPGN+REL+N VER+V Sbjct: 316 RPEDIALLADHFLRRFARKHGVKV-TGFADSARAALIGYRWPGNVRELQNTVERAVILSE 374 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLRE------------------FQ 283 T + P P E + + +P LP+ Sbjct: 375 TGRAVTAAALGLPGDFLPGELPLEPAPAPEVPALPVAAVAEEPAGASPTVTDSHGQVLKL 434 Query: 284 MQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + EK+ ++ +L+Q N+ +AA LG++ R L+++++ Sbjct: 435 DELEKQAIRAALRQTGGNRTQAAAELGISIRTLRNKLQEYRL 476 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 488 bits (1258), Expect = e-137, Method: Composition-based stats. Identities = 126/319 (39%), Positives = 179/319 (56%), Gaps = 9/319 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++ ++ + +VL Q+ +AP D VLI GE GTGKEL+A +H S R F+ +NCA Sbjct: 127 EIVAQSKAMRQVLSQIKRVAPTDSTVLITGESGTGKELVADSIHRHSQRNGRRFVKINCA 186 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ + LL+SELFG+E GAFTGA R PG+FE+A+GGT+FLDE+ P+ Q K+LRV+E Sbjct: 187 AIPDTLLESELFGYEKGAFTGAAARKPGKFEQANGGTVFLDEIGDMPLETQAKILRVLEE 246 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++R+GG +P+ V+VR+V ATN ++ MV +G FR DL RL +QLPPLRER DI Sbjct: 247 KEVDRLGGVRPIPVDVRVVAATNRNIQKMVADGAFREDLFFRLNVFPIQLPPLRERPEDI 306 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + E F +E + A L ++WPGN+REL+N VE S+ P Sbjct: 307 PFLIEEFMKFSSKE------STISPPAMHILCAHQWPGNVRELRNAVESSLLFGKEVVEP 360 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + P S LDL + EK +L +L++ Q +AA Sbjct: 361 EH---LPPALAGSMAVPTPAGVLISGEDESLDLDFRLQELEKGILVEALKRSDGVQAQAA 417 Query: 307 ELLGLTYHQFRALLKKHQI 325 LLG+ +KK+ I Sbjct: 418 RLLGIKERSLWHRVKKYGI 436 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 133/339 (39%), Positives = 186/339 (54%), Gaps = 17/339 (5%) Query: 3 EYKDNLL-GEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + + ++ G + + V+E V +A + VL+ GE GTGKEL+A +H SSR + P + Sbjct: 697 DVQRGMIKGNSPAIRSVMETVRKVANSESTVLVRGESGTGKELLAQAVHENSSRHEKPLV 756 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NCAAL+ +LL+SELFGH GAFTGA + GRFE A+GGTLFLDE+ + Q KLL Sbjct: 757 RVNCAALSPSLLESELFGHVKGAFTGAHEDRVGRFELANGGTLFLDEIGDISLDTQVKLL 816 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ ERVGGS+ L V+VRL+ AT+ +L + EG FR DL RL + LPPLRE Sbjct: 817 RVLQERAFERVGGSETLHVDVRLITATHQNLEQRITEGLFREDLYYRLNVISITLPPLRE 876 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI +A YF + + + A E L WPGNIR+L+NV+ER+V Sbjct: 877 RREDIFELAFYFLKRTANRLGKRI-SHIDPDAIEALERAPWPGNIRQLENVIERAVVLAE 935 Query: 242 TSDYPLDDIIID--PFKRRPPEDAIAVSETTSLPTLPLDLREF-------------QMQQ 286 + + D+ D K+R P S T + L E Q Sbjct: 936 SEVITMKDLPADLLEQKKRLPARVFETKNVRSDTTRRIPLSEVEVITFPGSQNHVDQRLT 995 Query: 287 EKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 E E L+L+L + N+ +AA LLG+ + + LKK+ I Sbjct: 996 EPEQLKLALAECDGNKAQAARLLGMPRSTYYSKLKKYDI 1034 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 127/321 (39%), Positives = 185/321 (57%), Gaps = 14/321 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + ++G + V E ++ +AP VLI GE GTGKELIA +H S R + P+I LN Sbjct: 199 QSEIIGYSPPIKRVSEIIAKIAPSSATVLIRGETGTGKELIAKAIHNYSPRKEKPYIKLN 258 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAA+ ENLL+SELFGHE GAFT A++ GRFE ADGGTLFLDE+ + +Q K+LR++ Sbjct: 259 CAAIPENLLESELFGHEKGAFTDARETRKGRFELADGGTLFLDEVGDLSLPLQAKILRIL 318 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E ERVGGS+ ++V+VR+V ATN DL MV G FR DL RL + PPLR+R Sbjct: 319 QEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLFYRLNVIPIFSPPLRDRGD 378 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D++L++ YF + C+ L T +A E L +Y WPGNIREL+N +ER V + Sbjct: 379 DVILLSRYFLERFCKRHAKELH--LTPKAEELLKHYDWPGNIRELENSIERLVLLAPSES 436 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + ++ + T + R + E+ + +L++ + + Sbjct: 437 IDEEVVL------------SVLPGRVHGYTKEVKTRADLEELERSAIIKALKECHGIKLQ 484 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA+ LG+T Q ++K++I Sbjct: 485 AAKKLGITNRQIGYKIQKYEI 505 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 124/316 (39%), Positives = 182/316 (57%), Gaps = 14/316 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + + +L +++ +AP D VLI G+ GTGKEL+A LH S+R P ++LNCA Sbjct: 140 GMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDKPLVTLNCA 199 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ALNE+LL+SELFGHE GAFTGA KR GRF ADGGTLFLDE+ ++Q +LLR I+ Sbjct: 200 ALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQE 259 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++RVG +Q + V+V L+ AT+ DL V+ G FR DL RL +++P LR+R DI Sbjct: 260 REVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDI 319 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A++F + GFT +A + L++Y WPGNIREL+N +ER+V Sbjct: 320 PLLADHFLRRFAER-NRKAVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGEYIS 378 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 ++ + + A + + EKE++ +L++ N+ AA Sbjct: 379 ERELPLAIAATPIKAENSAEIQP-------------LVDVEKEVILAALEKTGGNKTEAA 425 Query: 307 ELLGLTYHQFRALLKK 322 LG+T A L + Sbjct: 426 RQLGITRKTLLAKLSR 441 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 134/321 (41%), Positives = 179/321 (55%), Gaps = 2/321 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +G +++ V EQ+S +AP VL+ GE GTGKEL A +H R +GPFISLNC Sbjct: 194 HGFVGNSDAMRLVYEQISQVAPSSTTVLLYGESGTGKELAAHAIHSAGKRSKGPFISLNC 253 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL ENL++SELFGHE GAFTGA GRFE ADGGTLFLDE+ ++ Q KLLRV++ Sbjct: 254 AALPENLIESELFGHEKGAFTGASGIRKGRFELADGGTLFLDEVGELSLLTQAKLLRVLQ 313 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ER+GG++ L V+VR++ ATN DL MV EGTFR DL RL + +PPLRER++D Sbjct: 314 ERCFERLGGTESLSVDVRIITATNRDLARMVEEGTFRRDLYYRLNVFPIHMPPLRERQND 373 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG-TSD 244 I +A YF + + + L Y WPGNIREL+NV+ER+V G Sbjct: 374 IQPLAAYFVDKYAAANGRSGIR-ISLAVMDMLQRYTWPGNIRELENVMERAVLLVGQDGL 432 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + + P A L++ + E+ + +L + K + Sbjct: 433 ILPQHLPRELHSTHCPFGPAAHKGPVEPYAASGTLQDRLDELERACITDALARHKGHMGH 492 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA+ LGLT +KKH I Sbjct: 493 AAQALGLTERVMALRMKKHGI 513 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 126/320 (39%), Positives = 187/320 (58%), Gaps = 8/320 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 L+G + VL+QV +A VL++GE GTGKEL+A +H S R + PF+S++C Sbjct: 173 HGLVGSSEPMRRVLDQVRKVASTGATVLVLGESGTGKELVARAIHDASPRREQPFVSISC 232 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ E LL+SELFGHE GAFTGA +R GRFE A+GGTLFLDE+ P VQ KLLRV++ Sbjct: 233 AAIPEGLLESELFGHEKGAFTGAIRRKLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQ 292 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + ERVGG + ++V+VR+V ATN +L MV G FR DL RL + LPPLR+R D Sbjct: 293 ERQFERVGGEETVEVDVRVVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGD 352 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + +A +F ++ + + G A E L +RWPGN+REL+NV+E+++ Sbjct: 353 VEELARFFVARLAPRMSRAV-TGLAPEALELLRRHRWPGNVRELENVIEQALVFAEGELV 411 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D+ + ++ PP ++ V P+ L + E++L+ + ++ + + Sbjct: 412 RPRDLP-EGVRKAPPAPSLPV------PSGDRSLTDILEDLERQLILAAYEKARGVKAET 464 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LLG+ L+K+ I Sbjct: 465 ARLLGIKPSALYYKLEKYGI 484 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 487 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 126/319 (39%), Positives = 186/319 (58%), Gaps = 15/319 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++GE+ E+ Q+S +AP D +L+ GE GTGKEL+A+ +H S R +G I +NCA Sbjct: 139 EIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATAIHRHSKRKEGALIRINCA 198 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL+ENLL+SELFGHE GAFTGA K+ G FERAD GTLFLDE+ + Q K+LRV++ Sbjct: 199 ALHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDEIGDMSLTTQVKILRVLQE 258 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE ERVGG+ ++VNVR++ A++ +L ++ EGTFR DL RL+ + LP LRER DI Sbjct: 259 GEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRLSVVPLHLPALRERLVDI 318 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 ++A +F ++ GF++ A + L+ Y WPGNIREL+N +ER V Sbjct: 319 PILANFFLSLYNKK-NRKDIKGFSQEALDLLMEYPWPGNIRELENSIERGVILCLGEQIT 377 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 ++ F+ R P + L R+ EK +Q +L + +N+ A Sbjct: 378 AHELPPQFFRNRSPGE--------------LSSRDTLRDVEKRAIQQALARSGFNKSATA 423 Query: 307 ELLGLTYHQFRALLKKHQI 325 + LG+ ++ + + Sbjct: 424 KQLGIARQTLLNKIRDYGL 442 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 131/316 (41%), Positives = 182/316 (57%), Gaps = 12/316 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ + +L ++ +AP D VLI GE GTGKEL+A LH S+R + P + LNCA Sbjct: 140 GMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVARALHASSARSRRPLVILNCA 199 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ALNE+LL+SELFGHE GAFTGA KR GRF ADGGTLFLDE+ ++Q +LLR I+ Sbjct: 200 ALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQE 259 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++RVG +Q L V+VRL+ AT+ DL V+ G FR DL RL + +PPLR R DI Sbjct: 260 REVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVTIDMPPLRHRREDI 319 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +A YF + GFT +A + L++Y WPGNIREL+N VER+V Sbjct: 320 PPLARYFLQRYAER-NRKAVQGFTPQAMDLLIHYAWPGNIRELENAVERAVVLLTGEYIS 378 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 ++ + AI + P ++ + EKE + +L++ N+ AA Sbjct: 379 ERELPL----------AITGTPVADAPHGDDSIQPLV-EVEKEAILAALERTGGNKTEAA 427 Query: 307 ELLGLTYHQFRALLKK 322 LG+T A L + Sbjct: 428 RRLGITRKTLLAKLSR 443 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 129/319 (40%), Positives = 186/319 (58%), Gaps = 11/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + EVL + +A + VLI GE GTGKEL+A +H S R +GP + +NCA Sbjct: 190 NIIGRSKVIQEVLRAIDQVADTNTTVLISGETGTGKELVARAIHDNSRRAKGPLVQVNCA 249 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ + LL+SELFGHE GAFTGA R GRFE A GGT+FLDE+ + Q KLLRV++ Sbjct: 250 AMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIFLDEVGELSPIAQAKLLRVLQE 309 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E + +G S+ ++V+VR++ A+N DL V GTFR+DL RL + LPPLRER DI Sbjct: 310 REFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDLYYRLNVFPIFLPPLRERGPDI 369 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +L+A+YF ++ RE+ + T A + L+ Y WPGN+REL+N +ER+V G + Sbjct: 370 LLLADYFVLKYARELDKDV-KRITTSAIDMLMCYHWPGNVRELENCIERAVLLAGGNAVD 428 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + P + P VS L E++L+ +L+ + NQ +AA Sbjct: 429 SWHLP--PTLQMKPVGMQNVSRGK--------LEALVSAFERDLITDALKDVRGNQSQAA 478 Query: 307 ELLGLTYHQFRALLKKHQI 325 LLG T + ++K+ I Sbjct: 479 RLLGTTKRIVQYKVEKYGI 497 >UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ER80_ACIF5 Length = 545 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 134/343 (39%), Positives = 181/343 (52%), Gaps = 26/343 (7%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + + V V AP VL+ GE GTGKE+IA +HYLS R F+SLNCA Sbjct: 200 NVIGNSRAMQAVFADVHQAAPGKATVLLRGESGTGKEVIARAIHYLSPRRDKAFVSLNCA 259 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E++L+SELFGHE GAFTGA + GRFE ADGGTLFLDE+ Q KLLRV++ Sbjct: 260 ALPESILESELFGHERGAFTGATQERKGRFELADGGTLFLDEIGDISPAFQAKLLRVLQE 319 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG+Q +VNVR++ ATN +L V++G FRADL R+ + LPPLRER DI Sbjct: 320 REFERVGGTQTRRVNVRIIAATNRNLEEAVSKGEFRADLYYRINVVSIFLPPLRERREDI 379 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + E+F + E + L T A +T+++ WPGN+REL+N VER+ Sbjct: 380 PALIEHFLARYNAENQRKLT--LTPEALQTMVSCYWPGNVRELENCVERTATMMRGDIIR 437 Query: 247 LDDII------------------------IDPFKRRPPEDAIAVSETTSLPTLPLDLREF 282 D+ + PP A V + + D Sbjct: 438 NLDVPCQRNQCLSMALRPLEGSHPIVTMKLSSGMSVPPHAAPDVEGQVTDASGAGDGEGS 497 Query: 283 QMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 E++ L ++ + + Q +AA LLG T + L KH I Sbjct: 498 LPLSERDRLIQAMDRCGWVQAKAARLLGTTTRKLGYALNKHGI 540 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 141/343 (41%), Positives = 183/343 (53%), Gaps = 28/343 (8%) Query: 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 +G + S V QV +AP VL+ GE GTGKELIA ++ LS R PF+S+NCAAL Sbjct: 203 IGRSASMQHVFAQVHQVAPARTTVLLRGESGTGKELIARAIYRLSPRKDQPFVSVNCAAL 262 Query: 69 NENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 E LL+SELFGHE GAFTGAQ + GRFE A GGTLFLDE+ Q KLLRV++ E Sbjct: 263 TETLLESELFGHEKGAFTGAQTQRKGRFELAHGGTLFLDEIGDISPSFQAKLLRVLQERE 322 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 ERVGG+ P++V+VRL+ ATN +L MV EG FRADL R+ + LPPLRER DI Sbjct: 323 FERVGGTTPVRVDVRLIVATNRNLEQMVREGEFRADLYYRINVVSIVLPPLRERREDIPE 382 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLD 248 MA+YF + RE L F E A L + WPGN+REL+N +ER+ Sbjct: 383 MAQYFLNRFNRENGRALH--FNEEALRVLSSCYWPGNVRELENCIERTATMAHHDTIGRS 440 Query: 249 DIIIDPFKRRPPEDAIAVSETTSLPTLPLDL--------------------------REF 282 + + + E P P D+ E Sbjct: 441 SFLCEIDQCLTKVLHHLEREDAVRPARPSDVTVSNALNVPAKFGAPERDAGGLGMHSGEH 500 Query: 283 QMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + E+E L ++++ + Q +AA LLG+T Q L+KH I Sbjct: 501 IPEDERERLLWAMERCGWVQAKAARLLGITARQIGYALRKHGI 543 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 486 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 122/321 (38%), Positives = 187/321 (58%), Gaps = 13/321 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++G + +++ + VLI GE GTGKELIA +H S+R PF+ +NC Sbjct: 356 NNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHNNSNRKNKPFVRVNC 415 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A++ ENLL+SELFG+E GAFTGA + PG+F AD GT+FLDE+ P+ +Q KLLRV++ Sbjct: 416 ASIPENLLESELFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVLQ 475 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+E VGG P ++VR++ ATN +L M+ +G+FR DL RL + LPPLRER+ D Sbjct: 476 EREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSFREDLYYRLNVLGINLPPLRERKED 535 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I +AE+F ++ +++ + G + A L+ Y WPGNIREL+N++ER++ Sbjct: 536 IPELAEHFITKLNKKLHKTIL-GIKQDALNLLIEYSWPGNIRELENIMERAINLCDGDYI 594 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGK-YNQKR 304 D P +P E LP + EK++++ ++++ K +N+ Sbjct: 595 ---DSSYLPSYLKPVESKSFNLNIDIDHILPF------EEYEKQIIEAAMKKYKSFNK-- 643 Query: 305 AAELLGLTYHQFRALLKKHQI 325 A + LGLT+ KK+ I Sbjct: 644 AGKALGLTHRTVSLKCKKYNI 664 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 486 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 124/320 (38%), Positives = 185/320 (57%), Gaps = 10/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++G + + E+ + + P VL+ GE G GK+LIA +H+ S R P + +NC Sbjct: 139 DNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLIARAIHFHSPRKDRPLVKINC 198 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ ENL++SELFG+E GAFTGAQ PG+FE+AD GT+FLDE+ P +Q KLLRV++ Sbjct: 199 TAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVFLDEIGDVPAAIQVKLLRVLQ 258 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ER+G + ++VRLV ATN DL A + +GTFR DL RL + +PPLRER+ D Sbjct: 259 EREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDLYYRLNVVPLNIPPLRERKVD 318 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I +A +F ++ + + T+ E L+ Y WPGN+REL+NV+ERS+ + Sbjct: 319 IPFLANHFVHKLAPDTGCQV-ESITDAGMEKLMAYHWPGNVRELENVIERSLVMATGTQL 377 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 DDI ++ R + L Q E+E+++ +L++ N+ +A Sbjct: 378 DADDIKLESAPRPRAQGNDNHFLPEGL---------SLDQYEQEIIREALRRADGNKSQA 428 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LLGLT + R L + + Sbjct: 429 ARLLGLTRNALRYRLTQMGL 448 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 486 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 133/320 (41%), Positives = 192/320 (60%), Gaps = 2/320 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + S +E L V + D VL+ GE GTGKEL++ +HY S R GPF++LNCA Sbjct: 152 NIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELVSRAIHYNSDRKCGPFVALNCA 211 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENLL+SELFG+E GAFTGA+K GRFE A GGT FLDE++ VQ K+LR+IE Sbjct: 212 AIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGGTFFLDEISEMSAAVQAKVLRIIES 271 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ELER+GG+ ++V+VR++CATN DL MV EG FR DL R++ + LP LRER DI Sbjct: 272 KELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDDLYYRISVFPIMLPALRERSGDI 331 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + ++++F ++ + + L+ ++W GNIREL+N++ER+V Sbjct: 332 IPLSKHFVNHFSAKMGKTPI-VLSSEVEKILIKHKWEGNIRELQNIIERAVILCKNGVIR 390 Query: 247 LDDIIIDPFKR-RPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + + PPE +S+ S+ EK+L+ +L++ K N +A Sbjct: 391 TEHLPTSIVHGYTPPELNENISQNNSVNFDIPPNGLSLDDLEKQLVAKALERSKNNITKA 450 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+LLGLT FR L+K+ I Sbjct: 451 AKLLGLTRGTFRYRLQKYGI 470 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 486 bits (1252), Expect = e-136, Method: Composition-based stats. Identities = 117/320 (36%), Positives = 179/320 (55%), Gaps = 12/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++G +++ V + +A VLI GE GTGKEL+A LH SSR PF+ NC Sbjct: 225 ENIIGSSSTMRSVYYHIEQVANSATTVLIRGESGTGKELVAKALHEKSSRRNKPFVKFNC 284 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL +++++SELFGHE GAFTGA GRFE A+GGT+FLDE+ + Q KLLRV++ Sbjct: 285 AALPDSIIESELFGHEKGAFTGALAMRKGRFESANGGTIFLDEIGDISLSTQVKLLRVLQ 344 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVG + +V+VR++ AT+ +L M+ GTFR DL RL + +PPLRER+ D Sbjct: 345 EREFERVGSQETRRVDVRVIAATSRNLEEMMEAGTFREDLYYRLNVFPIYMPPLRERKCD 404 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I+++A++F + + + + A + L++Y W GN+REL+N +ER+V Sbjct: 405 ILMLADHFIEKFAKRMGRKPIR-ISSAAIDMLVSYHWAGNVRELENCIERAVLLAKGQSI 463 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + K+ E + L + E+E++ +L++ N A Sbjct: 464 KAHHLPPTLQKKSRAESSEVA-----------TLEDAIQALEREMIVDALKETGSNLAEA 512 Query: 306 AELLGLTYHQFRALLKKHQI 325 + LGLT + +KK+ I Sbjct: 513 SRRLGLTERKAGLRVKKYGI 532 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 485 bits (1251), Expect = e-136, Method: Composition-based stats. Identities = 119/318 (37%), Positives = 180/318 (56%), Gaps = 5/318 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++GE++ EV + + +A VL+ GE GTGK ++A +HY S R + PFI +NC + Sbjct: 159 IVGESSKIQEVYKIIGRVANSKATVLLTGESGTGKGMVAKAIHYASDRREKPFIQVNCGS 218 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E LL+SE+FGHE GAFT A + PG+FE A+GGTLFLDE+A +Q KLLRV++ Sbjct: 219 IPEGLLESEIFGHEKGAFTSAFFQKPGKFELAEGGTLFLDEIAEMSPNLQVKLLRVLQEK 278 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG++ NVR++ ATN DL ++E +FR DL RL + LPPL ER DI+ Sbjct: 279 EFERVGGTKTFHTNVRIIAATNRDLNKEISEKSFRKDLYYRLNVVSICLPPLCERGEDIV 338 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A+YF + E+ F + NY WPGNIREL+N VE ++ T Sbjct: 339 LLADYFLKRFSVEVGRNGM-FFAPEVLDIFRNYSWPGNIRELENAVEHAIIMSNTRVILP 397 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 +++ + D + S LRE ++ EK + ++++ N+ +AA+ Sbjct: 398 ENLPLSIKVEDVEADGTIILGDDSFK----PLREVLLEVEKRHISEAIERTGGNRTQAAK 453 Query: 308 LLGLTYHQFRALLKKHQI 325 LL ++ + ++ I Sbjct: 454 LLQISRRALLYKINENNI 471 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 124/319 (38%), Positives = 181/319 (56%), Gaps = 12/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G + EV + +A D VLI GE GTGKEL+A +H SSR PF+++NCA Sbjct: 148 SIIGISPPMEEVFRVIDRVADTDATVLITGESGTGKELVARAIHNRSSRRAAPFVAINCA 207 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ +LL+SELFGH GAFTGA + G+F +A+ GTLFLDE+ P+ +Q KLLR ++ Sbjct: 208 AIPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAGTLFLDEVGELPVELQSKLLRALQE 267 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++ VGG+ ++++VR+V ATNADL + EG FR DL RL+ V LPPLRER+ DI Sbjct: 268 KEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFREDLFYRLSVIPVHLPPLRERKEDI 327 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +FA + F+ + Y WPGN+REL+N VER + Sbjct: 328 PLLVRHFAAKHGG-----ASVTFSPEILAVMAAYGWPGNVRELENTVERILIMRNADTIH 382 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 DD+ + R P+ V +LP L Q E+E++ +L++ +NQ AA Sbjct: 383 PDDLPEKVRRGRSPQRECRV---INLPDEGYSLE----QLEREIVVEALERNNWNQSSAA 435 Query: 307 ELLGLTYHQFRALLKKHQI 325 L + H ++K+ I Sbjct: 436 RFLRIPRHTLIYRMEKYSI 454 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 126/323 (39%), Positives = 187/323 (57%), Gaps = 17/323 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+++G+++ L +L+ +S +AP D VLI GE GTGKE +A +H LS R PF+ +NC Sbjct: 336 DSMVGQSHLMLNILDLISQVAPSDTSVLITGESGTGKEHVADTIHQLSPRKSKPFVKVNC 395 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL NL++SELFGHE GAFTGA +R GRFE+ADGGT+FLDE+ P+ VQ KLLRV++ Sbjct: 396 AALPINLIESELFGHEKGAFTGATERRIGRFEQADGGTIFLDEIGDMPLEVQVKLLRVLQ 455 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ERVGG+QP+++N+R++ ATN +L + EG FR D+ RL + +P LRER D Sbjct: 456 QREIERVGGTQPIKINIRVITATNRNLERAIAEGKFRLDIYYRLNVFPIAMPALRERTED 515 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + +F R+ + G ++RA L++Y WPGNIREL+NV+ERSV + Sbjct: 516 IAPLVHHFIGYFGRKTGKNI-SGISDRALAMLMDYGWPGNIRELENVIERSVLLAKGNSI 574 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK-- 303 + P + V + + E++ + L+ + Sbjct: 575 DTVYLPAHPAVEGIAKAGPPVLKN-------------IFENERDHIISVLKACEGRISGE 621 Query: 304 -RAAELLGLTYHQFRALLKKHQI 325 AA++L + + +KK I Sbjct: 622 NGAAKILAIPPTTLSSKMKKLGI 644 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 126/319 (39%), Positives = 186/319 (58%), Gaps = 3/319 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++GE+ ++L V+ +A + V I GE GTGKE+IA +H S+R Q PFI +NCA Sbjct: 143 QIIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIAQAIHANSARSQFPFIKVNCA 202 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E L++SE FGHE GAFTGA + GRFE A GTL LDE+ P+ VQ KLLR I+ Sbjct: 203 AIPETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTLLLDEITEIPLAVQAKLLRAIQE 262 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGGS+P++V+VRL+ +N D+ + R DL RL + LPPLR+R DI Sbjct: 263 QEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLYYRLNVVPIYLPPLRDRPEDI 322 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +A YF +MC E F++ + + L+ Y WPGN+REL N+VER+V S+ Sbjct: 323 LPLAHYFLEKMCMENHK-QAKTFSKESIKKLVGYAWPGNVRELANIVERAVVMTTNSEIT 381 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + I+ P + +L +LP+ + + EK L+ +LQ N+ + A Sbjct: 382 PEHLYIENNHPNLPLRTASTLSQNTLTSLPVGM--TLQELEKRLIIETLQAQHNNRTKTA 439 Query: 307 ELLGLTYHQFRALLKKHQI 325 E+LG++ R L ++ + Sbjct: 440 EVLGISVRTLRNKLNEYNM 458 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 129/318 (40%), Positives = 191/318 (60%), Gaps = 4/318 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G + + + Q++ +AP +LI GE GTGKEL+A LH LS R +S+NCAA Sbjct: 141 LVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQALHRLSPRSNKALVSINCAA 200 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 ENLL+SELFGHE GAFTGA +R G E +DGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 201 FAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLDEIGEFPLNLQPKLLRVLQEK 260 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 RVGG+ + ++R++ AT+ +L M+ EGTFR DL RL + LPPLR R DI Sbjct: 261 TFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYYRLNVVSLHLPPLRHRREDIP 320 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+++ F ++ R++ PL P + +A+ L +Y WPGN+REL+N++ER + Sbjct: 321 LLSQLFLERLSRDMGCPL-PQLSSQAQHDLYHYEWPGNVRELQNILERGLLFCDGPTLEQ 379 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 + + + P + SET ++P L L E E++L+Q +L + Q +AAE Sbjct: 380 NHLPQQFHSQAPHHNGC--SETAAMP-LQQPLPEHLETIEQKLIQAALIDARGVQAKAAE 436 Query: 308 LLGLTYHQFRALLKKHQI 325 LLG++ + LKK+ + Sbjct: 437 LLGISRSNLQYKLKKYHL 454 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 138/318 (43%), Positives = 181/318 (56%), Gaps = 11/318 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 N++G+A V E V AP VLI+GE GTGKEL A LH S R FI +NC Sbjct: 151 HNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFAQALHEESPRADKAFIKVNC 210 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL+E LL+SELFGHE GAFTGA R GRFE ADGGTLFLDE+ +Q KLLRV++ Sbjct: 211 AALSETLLESELFGHEKGAFTGAIGRKEGRFELADGGTLFLDEIGDISPALQIKLLRVLQ 270 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVGG+Q L+V+VRLV ATN DL A V G FR DL RL V LPPLR+R+ D Sbjct: 271 QREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLYYRLNVVAVTLPPLRQRKGD 330 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + +F + + + G +L++ WPGN+REL+NVVER+V S+ Sbjct: 331 IPALVSHFIDKYSKAYGKDI-RGLAPGTLNAVLSHDWPGNVRELENVVERAVVLCKGSEL 389 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 DD+ RP E A + + E+E + +L+ + RA Sbjct: 390 TADDLPPTLRGPRPRERAPGALIPGA----------TLYEIEREAILRTLEMVGGSTSRA 439 Query: 306 AELLGLTYHQFRALLKKH 323 AE+LG++ + + LK++ Sbjct: 440 AEILGISVRKIQYRLKEY 457 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 129/319 (40%), Positives = 187/319 (58%), Gaps = 6/319 (1%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +D ++G + + E+ +Q+ +A D VLI GE GTGKE++A+ +H S+R GP + +N Sbjct: 144 RDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKEVLANLIHVNSARRNGPMVKVN 203 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAAL E+LL+SELFGHE GAFTGA + GRFE A G++FLDE+ + Q+KLLR++ Sbjct: 204 CAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHKGSIFLDEIGEMTLATQKKLLRIL 263 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E ERVGG+ ++V+VR++ ATN DL A V GTFR DL RL + LP LR+R Sbjct: 264 QEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRLNVITLHLPALRQRIG 323 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+AE+F + R +E A E L NY WPGN+R+L++ +ER+V + Sbjct: 324 DIPLLAEFFLDKY-RYAPSSPPARISEEAMERLNNYDWPGNVRQLEHEIERAVILSRGNV 382 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + + + P R + IA + L E E+ LQ +L Q + K Sbjct: 383 ITSEHMSLVPSSRSALQVDIA-----ARLREKSTLEELLADVERLALQEALVQHDDDLKV 437 Query: 305 AAELLGLTYHQFRALLKKH 323 AA LGL+ +F+ KK+ Sbjct: 438 AARSLGLSEAEFQKRQKKY 456 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 484 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 119/321 (37%), Positives = 185/321 (57%), Gaps = 14/321 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++G+++ + + A + VLI GE GTGKEL A +H S R G FI LNC Sbjct: 258 DNIIGKSDKINKTKDLAKKAAKTNSNVLIRGESGTGKELFAHAIHMESERVYGNFIKLNC 317 Query: 66 AALNENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ +LL+SELFG+E GAFTGA+K G+FE ADGGT+FLDE+ P+ +Q KLLRV+ Sbjct: 318 AAIPRDLLESELFGYEGGAFTGAKKEGKIGKFELADGGTIFLDEIGDMPLHMQAKLLRVL 377 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ER+G ++ +++VR++ ATN DL M+ EG FR DL RL V +PPLRER Sbjct: 378 QEREVERIGATRSKKIDVRVISATNRDLEKMIKEGEFREDLYYRLNVVTVNIPPLRERRE 437 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI +++EY ++ +++ F++ A L+NY+W G +R+L+N++ER+V Sbjct: 438 DIKILSEYLLEKISKKLGKK-TKSFSKEAMSCLMNYKWEGGVRQLENIIERAVNL----- 491 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 ++ + P+ + DL + Q EK+++ +L +N+ Sbjct: 492 -------VEHNEMIEPKHFPGNIVSNKYIVEDSDLNKLINQVEKDIILETLIYCNWNKTL 544 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA+ L ++ + KH I Sbjct: 545 AAKKLNISRTSLYEKIAKHNI 565 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 484 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 116/322 (36%), Positives = 168/322 (52%), Gaps = 17/322 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G V +S ++ VLI+GE GTGKELIA +H S R + +NCA Sbjct: 764 DIIGAGPEMQRVFHMLSQVSFAQSTVLILGETGTGKELIARAIHNGSPRKNKLMVKVNCA 823 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL NL++SELFGHE G+FTGA +R G+FE A+ GTLFLDE+ P+ +Q KLLR I+ Sbjct: 824 ALPANLIESELFGHERGSFTGAIERRIGKFELANHGTLFLDEIGEMPLDLQVKLLRAIQE 883 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ER+GG ++ +VR++ ATN +L V EG FR+DL RL + LPPLR+R+ DI Sbjct: 884 REIERIGGKSTIKTDVRIIAATNRNLQKEVAEGRFRSDLYYRLNVFPIVLPPLRDRKEDI 943 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A +F + R + A + L Y WPGN+REL++V+ERS+ + Sbjct: 944 SLLAAHFIERFARSTGRKNIK-LSSTAMKQLTAYNWPGNVRELEHVLERSILLTQGNIIR 1002 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ---K 303 + P D + E++ + L + K Sbjct: 1003 EIHLSSQPKSEAKVRQ-------------EEDFSRTLDEMERDYILGVLNKCKGKIFGPG 1049 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AAE+LGL ++K I Sbjct: 1050 GAAEILGLHVSTLNHRIRKLGI 1071 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 484 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 113/319 (35%), Positives = 176/319 (55%), Gaps = 15/319 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G++ + E+ + +A + VL+ GE GTGKEL+A +HY PF+ ++CA Sbjct: 144 NMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKELVARGIHYAGQEENLPFVPIDCA 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E LL+SELFGH GAFTGA ++ G+ E A GGTLFLDE+ P+ +Q+K LR ++ Sbjct: 204 AVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGGTLFLDEIGELPLALQKKFLRFLQE 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ R+G ++ +V+VR++ ATN DL A + G +R DL RL +++PPLRER DI Sbjct: 264 KEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWREDLFYRLNVISIEIPPLRERRDDI 323 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +F + + + G T E + Y WPGN+REL+NV+ER+V Sbjct: 324 PPLVNHFLAKYNAQNGKAI-QGMTGEVMEVFMAYDWPGNVRELENVIERAVVLCMGDSIA 382 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + +R P + M+ EK L+ +L++ + NQ AA Sbjct: 383 MSCLPPKLQERSAPAPSTDGVN--------------LMEMEKRLIVQTLEKTEQNQSAAA 428 Query: 307 ELLGLTYHQFRALLKKHQI 325 LG++ Q R +K H + Sbjct: 429 RELGISRKQLRTKMKHHGL 447 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 484 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 131/320 (40%), Positives = 180/320 (56%), Gaps = 12/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++L ++ EVLE + +A + VL+ GE GTGK ++A +H+ S R GPFI++NC Sbjct: 219 SSILSNSSRMQEVLEMIHRVAASNATVLLRGESGTGKSMVARAVHHNSKRAAGPFITVNC 278 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +AL E LL+SELFGHE GAFTGA + GRFE A+GGTLFLDE+ VQ KLL V++ Sbjct: 279 SALPETLLESELFGHERGAFTGAHETRKGRFELAEGGTLFLDEIGELSTAVQVKLLSVVQ 338 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E +RVGGS+PL+ +VRL+ ATN DL V EGTFR DL RL + LPPLRER +D Sbjct: 339 DREFQRVGGSRPLKCDVRLITATNKDLEKAVAEGTFREDLYYRLNVFPIYLPPLRERRTD 398 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I+L+AE+F + E + + A + L Y WPGN+REL+N +ER+V Sbjct: 399 ILLLAEFFLEKFASENDKNI-RRISTPAIDLLTQYHWPGNVRELQNCLERAVLICDEDTI 457 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + S + P E+EL+ +L++ NQ RA Sbjct: 458 KSYHLPP-----------TLQSSDSLREVSPSSFTAAVESFERELIIDALKKTDGNQTRA 506 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LL + +KK+ I Sbjct: 507 AALLETSLRIINYKIKKYAI 526 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 483 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 124/323 (38%), Positives = 182/323 (56%), Gaps = 2/323 (0%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 ++L+G++ V + V ++ VLI GE GTGKEL+A +HY S+R PF++ Sbjct: 143 SQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVA 202 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NC+AL E LL+SELFGH G+FTGA G FE ADGGT+FLDE+ P Q +LLR Sbjct: 203 VNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVRLLR 262 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ GE++RVG ++P++V+VR++ AT+ DL +G FR DL RL + LPPLR+R Sbjct: 263 VLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDR 322 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 D+ L+A +F + + G + RA E L RW GN+REL+NV+ER+V G Sbjct: 323 PEDVPLLAHHFLKLYASKADKKV-TGISPRAMEALTCNRWTGNVRELENVIERAVVLTGN 381 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 ++D+ P+ + V LP R E+ L L++ N Sbjct: 382 EVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAK-RLAMRAFERRYLSALLEKNNQNV 440 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AA G+ FR LLK++++ Sbjct: 441 SSAARAAGVDRSNFRRLLKQYEV 463 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 483 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 135/320 (42%), Positives = 188/320 (58%), Gaps = 6/320 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++G + + +VL V AP VLI GE GTGKELIA +HY S R PF+S+NC Sbjct: 143 HKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGKELIARAIHYTSPRKDNPFVSVNC 202 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 ALN +L+SELFGHE G+FTGA GRFE+ADGGTLFLDE+A +Q KLLRV++ Sbjct: 203 MALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGGTLFLDEIAELTPDLQVKLLRVLQ 262 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ERVGG + ++V++R+V ATN DL AMV +GTFR DL RL + LPPLRER D Sbjct: 263 ERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFRDDLYYRLNVVQIPLPPLRERRED 322 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ +F ++C + +P F+ A L Y WPGNIR+L+NVVE + + Sbjct: 323 IPLLVAHFVDKVCTDNTMP-AKTFSTEALNYLTGYEWPGNIRQLENVVESCLVLVPGTVI 381 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 +D++ + ++ L + LDL + + E L++ +L + Q +A Sbjct: 382 NVDNLPAEIR-----DEESQFKSAVDLLPVQLDLADTLEKIEAALIRRALVRADLVQVKA 436 Query: 306 AELLGLTYHQFRALLKKHQI 325 AE LG++ + LKK+ I Sbjct: 437 AEYLGISKSLLQYKLKKYAI 456 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 483 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 120/339 (35%), Positives = 188/339 (55%), Gaps = 19/339 (5%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + + N++G + + + + + +A D +LI GE GTGKE++A +H+ S R PF++ Sbjct: 140 QVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKEMVARAIHFNSGRLGKPFVA 199 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAA+ +LL+SELFG E GAFTGA +R G+FE+A+ GT+FLDE+ P+ +Q K+LR Sbjct: 200 INCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQGTIFLDEIGDMPLDLQAKILR 259 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E+ RVGG+Q + VNVR+V ATN +L V + FR DL RL + L PLRER Sbjct: 260 VLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFREDLYYRLNVVPITLAPLRER 319 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI + YF + C E+ +P T A L + WPGN+REL+N ++R+V Sbjct: 320 RDDIPELVRYFLDRTCTELSIP-PKQLTPEAMALLSRHSWPGNVRELENTIKRAVILSND 378 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLRE----------------FQMQQ 286 D D + E A+ + + + LR Q Sbjct: 379 PMLTEADF--DGLQPEGEETAMTPQDASLEAIVEAKLRSCLTGIEKLDKSDIHAKVLQQV 436 Query: 287 EKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 E+ L++ L++ ++NQ +AA++LG+ + R + +I Sbjct: 437 ERPLIRFILEKTRWNQVKAADILGINRNTLRKKIHDLEI 475 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 128/318 (40%), Positives = 181/318 (56%), Gaps = 10/318 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + E+ + + +A VLI GE GTGKEL+A LH S R +GPF+ LNCAA Sbjct: 165 IIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRREGPFVKLNCAA 224 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L+E +L+SELFGH GAFTGA + PGRFE A GGTLFLDE+ +Q KLLRV++ Sbjct: 225 LSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSMQVKLLRVLQEE 284 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG++ ++V+VR++ ATN DL + EG+FR DL RL V LPPLRER+ D+ Sbjct: 285 EFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPLRERQGDLP 344 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+ + F + E+ + G T A + LLNY +PGNIREL+N++E + S L Sbjct: 345 LLIQSFIERYNAELGKNI-QGLTSEAMKVLLNYHYPGNIRELQNIIEHAALLCNDSRIDL 403 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 + P D + +S L + EKEL++L++ + N A Sbjct: 404 RHL---------PGDLLPAQSQSSFLELAMMEENPVRYVEKELIRLAMAESGGNVSEVAR 454 Query: 308 LLGLTYHQFRALLKKHQI 325 L + LK+ ++ Sbjct: 455 KLSMGRSTLWRRLKEMKL 472 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 482 bits (1243), Expect = e-135, Method: Composition-based stats. Identities = 123/319 (38%), Positives = 191/319 (59%), Gaps = 15/319 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++ E+ +VLE +AP D VLI GE GTGKE+IA+ +H S R + PFI++NC Sbjct: 137 DIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIHKNSLRKERPFIAINCG 196 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ LL+SELFG++ GAFTGA G E A+GGTLFLDE+ P+ +Q KLLRV++ Sbjct: 197 AIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLDEIGELPLDLQVKLLRVLQE 256 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++ +G ++P +++VR + ATN DL MV EG FR DL R+ + +PPLRER+ DI Sbjct: 257 NEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYRINVIPIHIPPLRERKEDI 316 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +A+YF + C +P +E+ARE LLNY + GN+REL+N++ER+V + Sbjct: 317 IPLAQYFINKFCSRYGIPK-KRLSEKAREKLLNYDYKGNVRELENIIERAVLTTEGEEIT 375 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 DI + KR + +E + + E+ L+ L++ +N +A+ Sbjct: 376 --DIPVTVSKRYILSQELK------------PFKEAKKEFEESYLKNLLEKTDFNISKAS 421 Query: 307 ELLGLTYHQFRALLKKHQI 325 ++ G+T Q ++K++ I Sbjct: 422 KIAGITRAQIYRMIKRYGI 440 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 482 bits (1242), Expect = e-135, Method: Composition-based stats. Identities = 127/342 (37%), Positives = 196/342 (57%), Gaps = 24/342 (7%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +L+G+A S ++ E++ +A VLI GE GTGKE+IA+ +HY SSR + PF+ +NCA Sbjct: 363 SLIGKAASMEKMFEKIQLVADSRASVLITGESGTGKEMIANAIHYNSSRSENPFVKINCA 422 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENLL+SELFGH+ G+FTGA G+FE AD GT+FLDE+ + +Q KLLRV++ Sbjct: 423 AIPENLLESELFGHKKGSFTGAVTDKKGKFELADTGTIFLDEIGEMDLNLQSKLLRVLQE 482 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+E +G ++ +V+VR++ ATNA+L +V E FRADL RL + PPLR+R DI Sbjct: 483 REIEAIGSTKAKKVDVRIIAATNAELEQLVAEKKFRADLFYRLNVVKINTPPLRDRVEDI 542 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F + ++ + G + A LL YRWPGN+REL+NV+ER+V Sbjct: 543 PLLMNHFLEKYTKDNNKSI-KGISREASRLLLKYRWPGNVRELENVIERAVVLAQDEILN 601 Query: 247 LDDI-IIDPFKRRPPEDAIAVSETTSLPTL----PLDL------------------REFQ 283 +D I P++ + VS + + ++ PLDL Sbjct: 602 EEDFSDILSNMEEMPDNTVEVSHSNHVESVSGAEPLDLGSGRLTSGQLDGLDGRAMEIVV 661 Query: 284 MQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + E L+Q ++++ +Y + R A+ LG+ + +K+ I Sbjct: 662 SEVESRLIQYAMKKFRYTKTRVAKFLGINRNTLDKKIKELNI 703 >UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJY4_THEYD Length = 421 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 125/320 (39%), Positives = 182/320 (56%), Gaps = 11/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + L+G + +V + A D VLI GE GTGKEL+A +H LS R + PFI +NC Sbjct: 111 NGLIGISRIMEDVYCGIRKAALTDSNVLITGESGTGKELVARAIHNLSERKENPFIVINC 170 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ + LL+SELFG E GAFTGA G E AD GTLF DE+ + Q K+LRVI+ Sbjct: 171 TAIPDTLLESELFGFEKGAFTGANYTKKGLIEWADRGTLFFDEIGDVSPLFQTKILRVIQ 230 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE R+GG+ P++V+VR + ATN DL EG FR DL RL +++PPLR R+ D Sbjct: 231 EGEFIRIGGNHPVKVDVRFIAATNKDLSKACKEGVFREDLFYRLNVIHIEIPPLRSRKED 290 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + ++F + + K G TE A + L++Y +PGN+REL+N++ER++ + + Sbjct: 291 IPSLTQFFIKKHSAKRKDINIKGITEEALDALMSYSFPGNVRELENIIERAIAFTNSVEI 350 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + D+ K + + +LRE EKEL+ +LQ+ + N +A Sbjct: 351 TIKDLPAYLLKTQHSKKTPHG-----------NLREAVDNFEKELIWSALQKSRGNISKA 399 Query: 306 AELLGLTYHQFRALLKKHQI 325 AELLG+ Q + LK+ +I Sbjct: 400 AELLGIHRQQLQRKLKQFKI 419 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 124/320 (38%), Positives = 187/320 (58%), Gaps = 15/320 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 N++G ++ V + + +LA + VLI GE GTGKEL+A LH+ SR PF+S+NC Sbjct: 277 HNIIGASHKMQAVYQLLENLADFETTVLITGESGTGKELVAKALHHTGSRAFKPFVSVNC 336 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +AL ENLL+SELFGH GAFTGA + + GRF+ A GTL LDE+ +Q KLLRV++ Sbjct: 337 SALAENLLESELFGHVKGAFTGAIRDYQGRFQAAHTGTLLLDEIGDISPRIQLKLLRVLQ 396 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVG QP++V+VR++ TN DL V G FR DL RL ++LPPLRER D Sbjct: 397 EREFERVGDVQPIKVDVRVIACTNQDLKEKVGLGEFREDLYYRLNVMEIKLPPLRERRED 456 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A++F + ++ + + PG +++ +NY WPGN+REL++ +ER+ Sbjct: 457 IPLLADHFTARFEKKFNITI-PGVSDKVMNAFMNYHWPGNVRELEHSIERATVLCRDKMI 515 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 L+ I + IA + + S P L++ E + +L++ +N+ +A Sbjct: 516 SLEHIPGE----------IAEAYSLSGPR----LKKQPAADEPNEIIDALKRTGWNKAKA 561 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LLG++ ++K+ I Sbjct: 562 ARLLGVSRKTIYRKIEKYGI 581 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 128/323 (39%), Positives = 188/323 (58%), Gaps = 14/323 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G + FL VL ++ ++ VLI+GE GTGKELIA +H S R P I++NC Sbjct: 334 EGIVGRSPVFLSVLHSINMVSAAPSSVLILGESGTGKELIARCIHRQSPRKNKPLITVNC 393 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL L++SELFGHE GAFTGA + G+FE ADGGT+FLDE+ P+ Q KLLRV++ Sbjct: 394 AALPAELIESELFGHEKGAFTGATDKRAGKFEMADGGTIFLDEIGELPIESQVKLLRVLQ 453 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVGGS+ ++V+VR++ ATN +L V EG FR DL RL V+LP LRER+ D Sbjct: 454 EKEFERVGGSKVIKVDVRVIAATNRNLEKEVAEGRFRLDLYYRLNVFPVELPSLRERKED 513 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A++F ++ ++ + + A + L +Y WPGNIRE+++V+ERS+ + Sbjct: 514 IPLLAQHFVDKLSEKLSRNI-TDISPDALKALRSYDWPGNIREMEHVMERSLLMTTGTIL 572 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY---NQ 302 I++ +P I+ ++ + TL + E E + L+ K Sbjct: 573 --KQIMLPKMAAQPVGTTISSADGNRIKTL--------EEMEIEHILQVLKSCKGKVCGV 622 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AAELLGL + ++K I Sbjct: 623 GGAAELLGLPPSTLNSKIRKLGI 645 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 132/327 (40%), Positives = 183/327 (55%), Gaps = 18/327 (5%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A D ++G++ + + VL++VS +A D VLI GE GTGKEL+A +H S R P I Sbjct: 320 AHNFDEIVGQSPALVSVLQRVSKVAGTDSTVLITGETGTGKELVARAVHSASPRKAKPLI 379 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 LNCAAL +L++SELFGHE GAFTGA R PGRFE ADGGTLFLDE+ + Q KLL Sbjct: 380 KLNCAALPTHLVESELFGHEKGAFTGAVARKPGRFELADGGTLFLDEVGELSLEAQAKLL 439 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ E ERVGG+ P++V+VR++ ATN DL +V EG FRADLL RL V+LP LRE Sbjct: 440 RVLQEREFERVGGTAPVKVDVRVIAATNRDLAQLVKEGAFRADLLYRLNVFPVRLPALRE 499 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI L+ +F + + + + + L+ Y WPGNIREL+NV+ER+ Sbjct: 500 RPGDIPLLVRFFVTKFAGRLGKRI-ERVSGDTLDALVGYDWPGNIRELENVIERAAILSD 558 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 + +D ++ + + E + ++ L Q + Sbjct: 559 GPELVIDPDVLPVTRGGAAPAGAGGQS--------------LVAVEADHIRSVLAQTGWV 604 Query: 302 Q---KRAAELLGLTYHQFRALLKKHQI 325 AA +LGL + R+ +KK I Sbjct: 605 IEGPNGAATVLGLHPNTLRSRMKKLGI 631 >UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Deltaproteobacteria RepID=Q3A5A0_PELCD Length = 470 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 123/327 (37%), Positives = 179/327 (54%), Gaps = 4/327 (1%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPL-DKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 ++ ++G+A ++ + LA D VL++GE GTGKEL+A +H R + F Sbjct: 141 SDGFHGIIGQAPKMRQLFNNIEKLAAEGDSSVLVLGESGTGKELVARAIHAHGPRSRKNF 200 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + +NCAA+ E+LL+SELFG+ GAFTGA + GR + A+GGTLFLDE+ +Q KL Sbjct: 201 VPVNCAAIPEDLLESELFGYVKGAFTGATQAKMGRLQYAEGGTLFLDEIGDMKASLQAKL 260 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E E VGG +P+ V+VR+V AT+ DL V EG FR DL RL +Q+PPLR Sbjct: 261 LRVLQEKEFEPVGGVKPVSVDVRIVAATHRDLEKSVAEGRFREDLYYRLNVIPLQIPPLR 320 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R+ DI L+ E F R+ K P F GF++ A + L Y WPGN+REL+N+V+R Sbjct: 321 KRKEDISLLIERFVGIYNRKKKNP-FKGFSDDALQALKQYPWPGNVRELENLVQRMSIFF 379 Query: 241 GTSDYPLDDII--IDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQG 298 D+ + + SL +D + E +L+ +L Sbjct: 380 AGQSVSRKDLPEKYQGCDEAQQQPVQEQENSISLEDGGVDFNLLVNRFENQLILQALNVT 439 Query: 299 KYNQKRAAELLGLTYHQFRALLKKHQI 325 N++ AA+LL L LK+ I Sbjct: 440 GGNKREAAKLLNLKRTTLIEKLKRKNI 466 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 480 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 127/320 (39%), Positives = 180/320 (56%), Gaps = 12/320 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +L+ ++ +V+E V +AP V I GE GTGKE+++ +H LS R PFI++ Sbjct: 139 GSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSRAVHNLSLRRDKPFIAI 198 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCA++ L++SELFGHE GAFTGA +R PG FE A GGTLFLDEL P+ +Q KLLRV Sbjct: 199 NCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLFLDELGEIPIELQAKLLRV 258 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 +E G+L R+GG ++V+VR++CATN DL + G FR DL RL + LPPLRER Sbjct: 259 LEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDLYFRLNVFQIHLPPLRERR 318 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 D+ ++ ++F + + + G A E L NY WPGNIREL+N VER+V Sbjct: 319 DDVPILVQHFVDKFRGDSGKRV-SGVHPEAMEVLKNYDWPGNIRELRNAVERAVILCDGE 377 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + + D + P + SL E+E + SLQ+ N+ Sbjct: 378 LITREHLPPDMAGKSPERHTFRLPFGLSL-----------DAVEREYILGSLQRNGNNKA 426 Query: 304 RAAELLGLTYHQFRALLKKH 323 R AE+LG++ L ++ Sbjct: 427 RTAEVLGVSEKTLYNKLNRY 446 >UniRef50_A8V246 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V246_9AQUI Length = 454 Score = 480 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 130/326 (39%), Positives = 190/326 (58%), Gaps = 2/326 (0%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + +Y +++G + + + +AP D PVLIIGE GTGKEL A L LS R PF Sbjct: 127 LCQYLCSIIGSSPYMKNICKLAGEVAPTDLPVLIIGETGTGKELFARGLWKLSKRKDKPF 186 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I++NCAA+ ENL++SELFG+E GAFTGA+ + G+FE A+GGT+FLDE+ P+ Q KL Sbjct: 187 IAINCAAIPENLIESELFGYEKGAFTGAETQKKGKFEIANGGTIFLDEIGEMPLEAQSKL 246 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ G RVGG + + V+VR++ ATN DL MV EG FR DL RL +LPPLR Sbjct: 247 LRVLQEGSFYRVGGEEEINVDVRVIAATNKDLSQMVKEGKFREDLYYRLNVITFKLPPLR 306 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DI + E I + GFT+ E L + W GNIREL+NVV RS+ Sbjct: 307 ERKEDIPYIVEC-IINKNNKKINKNIEGFTKDYIEKLKSRYWKGNIRELENVVIRSMVFC 365 Query: 241 GTSDYPLDDI-IIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGK 299 S + D+ ++ K P+ + + + ++ + + EK L++ L++ Sbjct: 366 RDSILSITDLEFLEEGKEEIPDLYDKLKDIIEQLINHENAKQTKEKIEKILIENVLKKSN 425 Query: 300 YNQKRAAELLGLTYHQFRALLKKHQI 325 +N ++A++LG+ R L+K I Sbjct: 426 FNLSKSAQILGINRATLRKKLEKLNI 451 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 480 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 121/321 (37%), Positives = 178/321 (55%), Gaps = 11/321 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 ++G + EV ++ +A + VLI GE GTGKEL+A +H SSR +GP I +N Sbjct: 187 DSEIIGHSRVMQEVFGLIAQVADSNTTVLINGETGTGKELVARAIHDRSSRCKGPLIQVN 246 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAA+ + L++SELFGHE GAFTGA GRFE A GGT+FLDE+ Q KLLRVI Sbjct: 247 CAAMPDTLIESELFGHEKGAFTGALHARRGRFEEAHGGTIFLDEVGELSAAAQAKLLRVI 306 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + + + +G S+ + V+VR++ ATN +L V G FRADL RL + LPPLRER S Sbjct: 307 QEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGHFRADLYYRLNVFPIYLPPLRERGS 366 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI+L+A+YF ++ + + + + E L++ WPGN+REL+N +ER+V Sbjct: 367 DIILLADYFVLKYNKIMGKSV-KRISNAVLEAFLSHSWPGNVRELENCIERAVLLATGDS 425 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + PP I E + + QE+ ++ +L++ NQ + Sbjct: 426 IETLHL--------PPSLQIRSREGEKKESGKFN--AMIESQERAMIVDALKESHGNQSQ 475 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA +LG T + ++K I Sbjct: 476 AARILGTTKRIIQYKIQKFGI 496 >UniRef50_C9YE96 Transcriptional regulatory protein xylR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YE96_9BURK Length = 604 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 130/331 (39%), Positives = 183/331 (55%), Gaps = 14/331 (4%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G +++F V +AP VL GE G GKE+ A LH S R PF+++NCAA Sbjct: 268 LVGASSAFNAAFHMVRRVAPTPATVLFTGESGVGKEMFARSLHRNSDRAARPFVAINCAA 327 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E L++SELFG E GAFTGA PGRFERADGGTLFLDE+ T ++ Q KLLR ++ G Sbjct: 328 IPETLIESELFGVERGAFTGAGASRPGRFERADGGTLFLDEIGTLSLVAQGKLLRALQEG 387 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E+ERVGG++ ++VNVR+V ATN L V +G+FR DL RL + LPPLRER DI Sbjct: 388 EIERVGGTKTVKVNVRVVAATNEHLREAVRKGSFREDLFYRLNVFPIHLPPLRERRDDIP 447 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR-------- 239 L+ ++F + + PGF++RA + L NY +PGNIREL+N++ER+V Sbjct: 448 LLMQHFLNHYRERYQREV-PGFSQRAVKALFNYGFPGNIRELQNLIERAVIMVNDGELID 506 Query: 240 -----HGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLS 294 G + + + + +S + L + E+E + + Sbjct: 507 VHQLFRGGEELSEGVLSLPASAAGDAGGRLVGGTESSSSHVSLTPGQTLGGAEQEWIAAA 566 Query: 295 LQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 L++ N AA LG+T K+H I Sbjct: 567 LRRSAGNIAAAARQLGITRATLLYRAKQHGI 597 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 479 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 132/317 (41%), Positives = 194/317 (61%), Gaps = 12/317 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 L+G + + + + +AP VLI+GE GTGKEL+A +HY S R PF++L+C Sbjct: 142 SELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKELVAHAIHYRSERAGKPFVALHC 201 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL+E +L+SELFGHE GAFTGA + GRFE ADGGTLFLDELA + VQ KLLRV+E Sbjct: 202 AALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTLFLDELAEMSLKVQVKLLRVLE 261 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE ERVGG + ++V+VR + ATN +L V+EG FR DL RL +Q+PPLRER+ D Sbjct: 262 KGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFREDLFYRLNVINIQMPPLRERKDD 321 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I +++ YFA+ + GF A + LL++ W GNIREL+N +ER++ + Sbjct: 322 IPILSNYFAV-KYAKKYKKEIKGFDPEAIKALLSHHWQGNIRELQNTIERAIVLCKSDTI 380 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 +D + PE + +E +P + + + + EKE++Q +LQ +++ A Sbjct: 381 SVDHL---------PESIMPDNEY--IPVIKIPIGTTLKEAEKEIIQRTLQITNGSKQSA 429 Query: 306 AELLGLTYHQFRALLKK 322 A++LG++ + K+ Sbjct: 430 AKILGISTRKIEYKTKE 446 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 479 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 178/320 (55%), Gaps = 6/320 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G + +EVL+ + ++ + VLI GE GTGKELIA +HY R PF+ +NC Sbjct: 144 EGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKELIARAIHYNGPRSGYPFVVINC 203 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AL ENL +SELFGH G+FTGA K G F A GT+FLDE+ Q KLLR ++ Sbjct: 204 GALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKGTIFLDEIGETSASTQVKLLRFLQ 263 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE+ +VGG++ + V+VR++ ATN +L VN+G FR DL R+ + LP L+ER+ D Sbjct: 264 DGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFRKDLFYRINVIRIHLPQLKERKED 323 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ YF ++K F+ A LLNY WPGNIREL+N+VER+V Sbjct: 324 IPLLVNYFLELYTDKLKKDK-RVFSGSAMAVLLNYDWPGNIRELQNIVERAVALSKNQVI 382 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 ++ + + S T+ + E +QEK + ++ + NQ + Sbjct: 383 GVEALPLPTGGF-----VAHNSNPERDVTVKSSIVETLSEQEKNAIVEAMNKYGGNQTKV 437 Query: 306 AELLGLTYHQFRALLKKHQI 325 +++LG++ +KK++I Sbjct: 438 SQVLGISTTTLWRKIKKYKI 457 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 479 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 129/320 (40%), Positives = 174/320 (54%), Gaps = 11/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +NL+G+ E+ E +S +A VLI GE GTGKELIAS +H S+R PFI +NC Sbjct: 144 ENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTGKELIASAIHAKSTRKDKPFIQINC 203 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL E L+ SELFGHE GAFTGA R G FE+A GGTLFLDE+ Q LLR++E Sbjct: 204 AALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGGTLFLDEIGDISPTTQVSLLRILE 263 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 G +RVGG++ ++ +VRL+CATN DL A E FR DL RL +Q PPLR+R SD Sbjct: 264 LGTFQRVGGTETIKADVRLICATNRDLAAAAREKQFREDLYYRLNVVSLQAPPLRDRRSD 323 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ YF + C + G T A L NY WPGN REL N++E +V Sbjct: 324 IPLLVRYFLERYCS-LNNKQIDGVTRDAMTLLCNYDWPGNCRELANIIEHAVIFSRGRTL 382 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D + + ++ T+ E L++ L++ +N K+A Sbjct: 383 DKDSLPSQIRTSDRHSSGLTLNLATA----------TLADAESALIKKVLEESNWNLKKA 432 Query: 306 AELLGLTYHQFRALLKKHQI 325 AELL + ++K+ + Sbjct: 433 AELLDIARGTLYGKMEKYHL 452 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 479 bits (1234), Expect = e-134, Method: Composition-based stats. Identities = 122/325 (37%), Positives = 177/325 (54%), Gaps = 6/325 (1%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + + ++GE + +V+ QV +A D VLI GE GTGKELIA +H S R PF Sbjct: 134 LGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWAIHDRSKRVSQPF 193 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 +++NC A+ L++SELFGHE GAFT A++ G FERA+GGTLFLDE+ P+ Q KL Sbjct: 194 VAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLDEIGELPLDAQVKL 253 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV+E ++ R+GG + + VNVR+V ATN +L V G FR DLL RL +QLPPLR Sbjct: 254 LRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLYRLNVFTIQLPPLR 313 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DI L+A +F + + L + T A + L Y WPGN+R+L+N V+ ++ Sbjct: 314 ERKEDIPLLAAFFLRKHNSLLNLSI-ESITPEAMDQLCAYDWPGNVRDLENAVQSAMILC 372 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + R + LR+ EK + +LQ+ Y Sbjct: 373 VDRQIHPGHLPA-----RIKSYQMERLTAPQEAEEDTSLRDTNSLAEKARILSALQKHNY 427 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N+ AE L ++ +K++ + Sbjct: 428 NRTLTAEALNISRKTLFNKMKRYNL 452 >UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES5_9BACT Length = 1454 Score = 479 bits (1234), Expect = e-134, Method: Composition-based stats. Identities = 117/320 (36%), Positives = 184/320 (57%), Gaps = 6/320 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 N++G++ +++ E + + VL+ G GTGKELIA LHY S+R F++ C Sbjct: 1136 SNIIGKSPEMMKIFEIIEKVKDTPTTVLLEGPSGTGKELIARALHYSSNRRNKAFVAQYC 1195 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AL E LL+SELFGH G+FTGA G FE ADGGT FLDE++ Q KLLR ++ Sbjct: 1196 GALPETLLESELFGHVKGSFTGAAYDKKGLFEIADGGTFFLDEISDISQSTQSKLLRFLQ 1255 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE++RVG ++ +V+VR+VCATN L V G FR DL RL + +PPL+ R D Sbjct: 1256 EGEIKRVGATKTEKVDVRVVCATNTPLMERVKSGEFRLDLYYRLNVIRIDVPPLKNRTGD 1315 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A +F + + + + GFT A + L Y WPGN+R+L+N +ER+V + + Sbjct: 1316 IPLLAIHFLDKYNKRMNKNVM-GFTAEAMKVLEQYDWPGNVRQLENEIERAVTLAEPNTF 1374 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + R I S+T ++ + +L++ + E++L+ SL++ ++NQ +A Sbjct: 1375 IKPSDFSEEVYRH-----IEYSKTIAMLSGKKNLKDAIEELERKLISQSLEKFQWNQTQA 1429 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+ LGL+ ++++ + Sbjct: 1430 AKELGLSRQGLIKKMQRYNL 1449 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 479 bits (1234), Expect = e-134, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 175/319 (54%), Gaps = 10/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + + E V A D PV I GE GTGKEL+A +H LS R + P+I +NCA Sbjct: 148 GIVGHSRQMKNLFELVEKAAQSDFPVFICGESGTGKELVAQAIHNLSPRAEQPYIQVNCA 207 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ALNE+LL+SELFGH GAFTGA + GRFE A G +FLDE+ PM +Q KLLRV+E Sbjct: 208 ALNESLLESELFGHVKGAFTGALQHRKGRFEAAHKGDIFLDEIGDLPMAMQVKLLRVLET 267 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVG ++ + V++R + ATN +LP ++ G FR DL R+ + LPPLRER+ D+ Sbjct: 268 KTFERVGDNRTISVDLRFITATNKNLPDLIARGGFREDLFYRINVIPIHLPPLRERKEDV 327 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + ++F ++ R+ G + A + Y WPGN+RELK+ +E S Sbjct: 328 PHLVDFFIKRLSRK-NKKNIQGLSPEAMRIFMQYSWPGNVRELKSALEYSYVLAEGDRIR 386 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 +++ PE LP E Q++K+ L +L+Q N+ +AA Sbjct: 387 SENL---------PEYLKDGGNDFQAVDLPPAPAENLQQRQKQELIEALKQSSGNKSQAA 437 Query: 307 ELLGLTYHQFRALLKKHQI 325 LLG+ ++K+ I Sbjct: 438 RLLGINRVTVLNRMRKYGI 456 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 478 bits (1233), Expect = e-134, Method: Composition-based stats. Identities = 122/320 (38%), Positives = 186/320 (58%), Gaps = 9/320 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++ E+ ++ +++S +A VLI GE GTGKE +A +H S R +GPFI +NCA Sbjct: 284 DMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHAIHLGSDRGKGPFIKVNCA 343 Query: 67 ALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 ++ E+L++SE+FG+ GAFTGA K PGR ERADGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 344 SIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLDEIGEMPLALQAKLLRVLQ 403 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ER+G ++ ++VN+R++ ATN L + +G FR DL RL + LPPLRER D Sbjct: 404 DREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYYRLNVINLHLPPLRERLED 463 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + +F + +I G T A TLL Y WPGNIREL+NVVER+V + Sbjct: 464 IEPLTHFFISKFN-DILKANVSGITPNAMATLLQYSWPGNIRELENVVERAVNYTRSGLI 522 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 L + + +T ++ Q E++++ +L++ N+ +A Sbjct: 523 ELIHLPHQIISGNTALGQVMNKKTIRH-------QDRLGQIERDMIAAALEKAGGNKTKA 575 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+LL L+ + L K+ + Sbjct: 576 AKLLNLSRSRLYDKLNKYDL 595 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 478 bits (1233), Expect = e-134, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 183/321 (57%), Gaps = 14/321 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+++G++ + + EQ+ ++ VLI GE GTGKELIA +H S+R F+++NC Sbjct: 322 DDIIGQSEAMKRLKEQIKSISNSPSTVLIQGESGTGKELIAQSIHNNSNRRSKSFVAINC 381 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRH-PGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 A+ ++L++SELFG+E GAFTGA++ PG+FE A+ GTLFLDE+ P+ +Q LLRV+ Sbjct: 382 GAIPKSLIESELFGYEEGAFTGAKRGGCPGKFELANEGTLFLDEIGEMPLDMQVNLLRVL 441 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + G + R+GG++ + V+VR++ ATN +L + +G FR DL RL+ + +PPLRER Sbjct: 442 QEGCITRIGGNKCVDVDVRIIAATNKNLKKEIEDGNFREDLYYRLSVIPIYVPPLRERNG 501 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI ++ E+F ++ L P + E LL+Y WPGN+REL+N +E V +G + Sbjct: 502 DIGILIEHFLKIKADKLGK-LIPEIRKNIYENLLSYGWPGNVRELENCIENIVNMNGNTS 560 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + ++ I + ++ + + EK + + + Q N + Sbjct: 561 FNFENRTIKKDVNCYSDVSLEYDMCS------------LEELEKRAISICINQCGGNISK 608 Query: 305 AAELLGLTYHQFRALLKKHQI 325 A +LG+ +KK+ I Sbjct: 609 ACRILGINRSTLYIKIKKYNI 629 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 118/321 (36%), Positives = 173/321 (53%), Gaps = 9/321 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + L+G + + +++ ++ + VL+ GE GTGKEL+A +H S R PFI +NC Sbjct: 266 NKLIGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKELLARAIHQNSPRHMNPFIVVNC 325 Query: 66 AALNENLLDSELFGHEAGAFTGAQ-KRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 A+ NL +SELFG+E GAFTGA K PG FE A+GGTLFLDE+ P+ +Q KLLRV+ Sbjct: 326 GAIPNNLFESELFGYEGGAFTGADRKGKPGMFELANGGTLFLDEVGEMPIEMQAKLLRVL 385 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + G RVGGSQ + VNVR++ AT+ +L M+N FR DL RL +++PPLR+R Sbjct: 386 QEGTFYRVGGSQSVHVNVRVLAATHRNLEDMINRRQFREDLYYRLNVVALEIPPLRDRRE 445 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI + F + C++ + L+Y WPGN+RELKN VER V Sbjct: 446 DIPELVHLFMQEFCQKYDKNI-KKIEPAVMTAFLDYTWPGNVRELKNAVERLVVLTDGDI 504 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + + + + P L ++ EK+L+ +LQQ + N+ Sbjct: 505 IDEAALPENLRRNTYISLVTS-------PVSQGKLMNVAVEAEKQLILKTLQQVRGNRSE 557 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA +LG+ L++ I Sbjct: 558 AARVLGIPRSTLYYKLRQLGI 578 >UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteobacteria RepID=NIFA_KLEPN Length = 524 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 126/320 (39%), Positives = 184/320 (57%), Gaps = 10/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++G++ + ++++ + ++ D VL+ GE GTGKELIA+ +H+ S R F+ NC Sbjct: 210 ENMVGKSPAMRQIMDIIRQVSRWDTTVLVRGESGTGKELIANAIHHNSPRAAAAFVKFNC 269 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL +NLL+SELFGHE GAFTGA ++ GRFE ADGGTLFLDE+ + Q KLLR+++ Sbjct: 270 AALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLDEIGESSASFQAKLLRILQ 329 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE+ERVGG + L+VNVR++ ATN L V G FR DL RL + LPPLRER+ D Sbjct: 330 EGEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHFREDLYYRLNVMPIALPPLRERQED 389 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I +A + ++ L ++ A L+ Y WPGN+REL+N +ERS + Sbjct: 390 IAELAHFLVRKIAHSQGRTL--RISDGAIRLLMEYSWPGNVRELENCLERSAVLSESGLI 447 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D I+ + P A + LD E++ L +L++ + Q +A Sbjct: 448 DRDVILFNHRDNPPKALASSGPAEDGWLDNSLD--------ERQRLIAALEKAGWVQAKA 499 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LLG+T Q ++ I Sbjct: 500 ARLLGMTPRQVAYRIQIMDI 519 >UniRef50_B9M6T3 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=B9M6T3_GEOSF Length = 488 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 126/320 (39%), Positives = 176/320 (55%), Gaps = 15/320 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D +G + L+V + +AP D VLI+GE GTGKEL A +H S R PF+++NC Sbjct: 183 DQFVGTGKAMLDVFANIRKVAPTDLTVLILGESGTGKELTAQAIHERSPRKDKPFVAINC 242 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ +NLL++ELFGHE GAFTGA G+FE AD GT+FLDE+ P +Q KLLR ++ Sbjct: 243 AAIPDNLLEAELFGHEKGAFTGAHTTKKGKFEYADNGTIFLDEIGDMPSNLQAKLLRFLQ 302 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 +ERVG +VNVR++ ATN DL + EG FR+DL RL + LPP+RER D Sbjct: 303 DKIVERVGTVGGKKVNVRVIAATNRDLSVAIAEGKFRSDLYYRLDEFAINLPPVRERGED 362 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 +++A+YF + RE L FT+ A + + NY WPGN+RE+ N V RS+ Sbjct: 363 TLILAKYFLNKFSREGG--LAKTFTKEAIDVINNYDWPGNVREIINKVRRSIVMATGRYV 420 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D+++D K DL EKE ++ + YN A Sbjct: 421 TPADLMLDVAKVEDGAGNS-------------DLSSAVAVLEKEKIKEVFKSCNYNISTA 467 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+LLG++ +K + I Sbjct: 468 AKLLGVSRPTLYRRMKIYGI 487 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 128/330 (38%), Positives = 180/330 (54%), Gaps = 14/330 (4%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G EV + + +A D VLI GE GTGKEL+A L++ S R PF+ +NCAA Sbjct: 149 IIGNHTRMQEVYKLIGQVANKDVTVLITGESGTGKELVARALYHHSDRKNKPFLGVNCAA 208 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E L +SELFG+E GAFTGA++ H G+FER GGTLF DE+A P+ Q KLLR ++YG Sbjct: 209 IPETLFESELFGYERGAFTGAERTHIGKFERCHGGTLFFDEIAEMPLSTQAKLLRALQYG 268 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E+ERVG QPL+V+VR++ ATN +L V +G FR DL RL + LPPLRER DI Sbjct: 269 EIERVGAEQPLKVDVRVLVATNKNLERAVEQGRFREDLYWRLKIISIHLPPLRERPEDIP 328 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + +YF ++ E K P+ + A L ++ WPGN+REL+N V R+V Sbjct: 329 ALVDYFLVRFGEEYKSPI-RRIEDGALAKLKSHAWPGNVRELENTVRRAVVLSSGDVIRE 387 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDL-------------REFQMQQEKELLQLS 294 + + D P + + +L E+ LL Sbjct: 388 EHLRFDSGGHEPSSPEWDKNPWARVERKLEELIPDLLQVGGEAMHESIIDMVERILLSKV 447 Query: 295 LQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 L+Q NQ +AA +LG++ + R +KK Sbjct: 448 LEQCGNNQVKAARVLGVSRNTLRHRMKKFD 477 >UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJU0_DESAA Length = 443 Score = 477 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 133/317 (41%), Positives = 196/317 (61%), Gaps = 11/317 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++ + + LE V +A VLI GE GTGKEL A ++HY SSR F+++N AA Sbjct: 135 IITQDDRMKRCLEVVDSVADSKAAVLISGESGTGKELFARQIHYSSSRKDKNFVAVNVAA 194 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E LL+SELFGHE GAFTGA R G+FE A GGTL LDE+ + +Q KLLRV++ Sbjct: 195 LPETLLESELFGHEKGAFTGAINRKIGKFELASGGTLLLDEITEMDIGLQAKLLRVLQES 254 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++RVGG+ P+ V+VR+V TN D+ + +G FR+DL RLA ++LPPLRER SD++ Sbjct: 255 EVDRVGGTSPVNVDVRVVATTNRDVEQAIADGKFRSDLYYRLAVIPLKLPPLRERSSDVI 314 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+AE+F + + G T+ A+ TLLN WPGN+REL+N +ER+V Sbjct: 315 LLAEHFIRKYNARDGKNV-KGLTKNAQNTLLNLDWPGNVRELENTIERAVLLCKGDQIDH 373 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 +D+ ++P PP A+ + S+P++ LRE E++++ +L Q + N+ AA+ Sbjct: 374 NDLFMEP----PPPKALPRQD--SIPSVSTTLRE----MEEQMIYQALDQTEGNRTHAAQ 423 Query: 308 LLGLTYHQFRALLKKHQ 324 +LG++ R L ++Q Sbjct: 424 ILGISVRTLRNKLNEYQ 440 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 477 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 124/315 (39%), Positives = 183/315 (58%), Gaps = 7/315 (2%) Query: 11 EANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 + + ++ EQ+ +A VLI GE GTGKEL+A +HY S R + PFI +NCAAL E Sbjct: 147 KNSKMSQIYEQLKKIAQSKASVLIQGESGTGKELVARAIHYFSPRCEKPFIRVNCAALAE 206 Query: 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELE 130 +LL+SELFGHE GA+TGA + GRFE A+ GTL LDE++ +Q KLLRV+E E E Sbjct: 207 SLLESELFGHERGAYTGAVAKRIGRFELANEGTLLLDEVSEISPNIQAKLLRVLEEEEFE 266 Query: 131 RVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMA 190 RVGG + ++++VR+V TN DL + +GTFR DL RL + LPPLRER DI L+A Sbjct: 267 RVGGEKTIKIDVRIVATTNRDLAKEIQKGTFREDLFYRLNVVPIHLPPLRERREDIPLLA 326 Query: 191 EYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDI 250 + + E + +RA + L Y WPGN+RELKN+++R+V + + L++ Sbjct: 327 NTYLEKYSSENNSSV-KSIEKRAMDYLSQYNWPGNVRELKNIMQRAVVMGSSEELGLENF 385 Query: 251 IIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLG 310 + +++ ++ + + EKEL+ +L++ N+ +AA LL Sbjct: 386 T--SLIDIKKSEHTMCNDSVNIKKNGQSIEDA----EKELIFTTLEKTGGNKTKAAGLLK 439 Query: 311 LTYHQFRALLKKHQI 325 +T R L K+ I Sbjct: 440 ITTRTLRNKLNKYVI 454 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 477 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 178/323 (55%), Gaps = 12/323 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 L+G + + + E + +AP VL+ GE GTGKEL+A +H S R F+++NCA Sbjct: 142 GLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELVARAIHAASPRNNALFVAVNCA 201 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ +L+SELFGHE GAFTGA K G+FE ADGGTLFLDE+ PM +Q KLLR ++ Sbjct: 202 AIPHEMLESELFGHEKGAFTGAVKERIGKFELADGGTLFLDEVTEMPMQLQAKLLRALQE 261 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 +ER+GG++P+ V++R+V ATN + + +G R DL RL + LP L+ R+SDI Sbjct: 262 NVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLREDLYYRLNVFRIDLPALKARKSDI 321 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A +F + + +A + L+ Y WPGN+REL+NV+ER+ G Sbjct: 322 ELLATHFLAK--------RRVDISAQAVQVLMQYDWPGNVRELENVLERAAIISGNQQIQ 373 Query: 247 LDDIIIDPFKRR----PPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + ++T P PL L Q E++L+ +L Q N+ Sbjct: 374 PQHLPAEMLNSNGEFIDATALGHNADTAEAPQNPLCLPNAVEQLERQLIAKALAQTNGNK 433 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 +AA+LL ++ L ++ I Sbjct: 434 SKAAKLLEISERSLWYKLSQYGI 456 >UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRW0_ACIBL Length = 463 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 121/324 (37%), Positives = 185/324 (57%), Gaps = 6/324 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++G + + ++ + +A VLI GE GTGKEL+A +H S R PF S+NC Sbjct: 142 DNIVGTSPAMGKLKNTIRMVASTGSTVLIHGESGTGKELVARAVHTCSPRAGEPFTSINC 201 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A E LL+SELFG+ GAFTGA + G FE + GGT+FLDE++ + +Q KLLRV++ Sbjct: 202 GAFPETLLESELFGYVKGAFTGAVQNKRGLFEVSTGGTIFLDEISEMTLTMQVKLLRVLQ 261 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + VGG+ + V+VR++ ATN +L A V +G FR DL RL+ VQ+PPLRER D Sbjct: 262 ERCIRPVGGTSEIPVDVRVIAATNKNLDAQVADGVFREDLYYRLSVIPVQVPPLRERVDD 321 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A +F + + + L Y WPGN+R+L+N +ER+V + Sbjct: 322 IELLANHFLKKYAPAAGKSI-RAIRVESLGDLREYDWPGNVRQLENTIERAVALEMSDVL 380 Query: 246 PLDDIIIDPFKRRP----PEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 ++ I + K +P + + ++ +D+ + E+ LLQ +L+Q Sbjct: 381 HVE-IPTERQKNKPAAAAAVAGFSGNGQVAINADGIDMEAYVANIERSLLQQALKQANGV 439 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 Q +AA+LL L+Y FR L+KK+++ Sbjct: 440 QTKAADLLKLSYRSFRHLMKKYEL 463 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 123/320 (38%), Positives = 175/320 (54%), Gaps = 1/320 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++G + V ++ AP + VLI GE GTGKE+IA +HY S R PF++++C Sbjct: 141 ENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEMIARAIHYNSLRKDQPFVTVDC 200 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 L+ENLL+SELFGH G+FTGA G F+ A+ GTLFLDE P+ Q KLLRVI+ Sbjct: 201 NTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNGTLFLDEFGNIPLSTQAKLLRVIQ 260 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E VG + + NVRL+ ATN DL AMV EGTFR DL R+ + P LRER D Sbjct: 261 EREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFREDLYYRINVFPIHSPALRERRDD 320 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I +A +F C E+ P+ +E A L+NY WPGN+REL+N ++R+V Sbjct: 321 IPALAFHFLKIFCSELGKPVSE-ISEGAMSLLMNYGWPGNVRELENTMQRAVILSSDGII 379 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + + + + + + + EK +Q +L++ N R+ Sbjct: 380 RQAHLASIIDNSPRLDLDVPRTSDELKRIKKIAREKSVEEVEKLFVQETLKRNASNVTRS 439 Query: 306 AELLGLTYHQFRALLKKHQI 325 AE G+ F+AL+KK+ I Sbjct: 440 AEETGMQRTNFQALMKKYNI 459 >UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C585F Length = 643 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 129/323 (39%), Positives = 181/323 (56%), Gaps = 11/323 (3%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + + ++GE+ ++ QV +A VL+ GE G+GKEL+A +H S R +G FI Sbjct: 330 KIESEIVGESAVLQQIESQVVRVAETRATVLVRGESGSGKELVARAIHLHSPRREGAFIC 389 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 LNCAAL E LL+SELFGHE GAFTGA +R G+FE AD GT+FLDE+ + Q K LR Sbjct: 390 LNCAALTETLLESELFGHEKGAFTGATERMVGKFEAADNGTIFLDEIGEMALSTQAKFLR 449 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V+E ERVGG+ ++V+VR+V ATN L V GTFR DL RL + +PPLR+R Sbjct: 450 VLEGHPFERVGGNTAIKVDVRVVAATNRPLEEAVRAGTFRRDLFYRLQVVQLDVPPLRDR 509 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 D+ L+AE+F + RE F GFT A + L YRWPGN+REL+NV+ER+V Sbjct: 510 LDDVPLLAEHFLKRFARETARK-FKGFTPEALDKLRAYRWPGNVRELRNVIERAVALGNG 568 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 DI + P + A+ E + EK + +L+ +N+ Sbjct: 569 PQLDAADIWLSGLDVGAPVVSAALVYKP----------ETIEEVEKRHILETLKHTDWNK 618 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 RAA +LG+ + ++ + Sbjct: 619 SRAATILGIERSTLDRKIDRYGL 641 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 179/323 (55%), Gaps = 4/323 (1%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + + ++G ++ EV + L +D VL+ GE GTGKEL+A +H+ S R G F++ Sbjct: 143 DIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGKELVARAIHFNSPRKSGAFVA 202 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NC A+ ENL++SELFGHE GAFTGA +R G+F+ A+ GTLFLDE+ +Q KLLR Sbjct: 203 INCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLANNGTLFLDEIGELRPDMQVKLLR 262 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ + VG ++ ++ R++ ATN +L M+ EG FR DL RL + LPPLRER Sbjct: 263 VLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEFREDLFYRLNVMPIFLPPLRER 322 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI +A F + ++ + T A + L +YRWPGNIREL+N++ERS + Sbjct: 323 ADDIEALAGNFIKKFSKQHGRQI-TAITPEALDMLKSYRWPGNIRELENIIERSFIVENS 381 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 +D + D K P + A + + PLD F+ + EKE + +L+ Sbjct: 382 HQITVDSLP-DSIKLTPKDGADKTASVGY--SGPLDFDAFKEEMEKEFIVSALKANNGRI 438 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 + + + ++K+ I Sbjct: 439 NQTVAQANIPKNTLLRKIRKYGI 461 >UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C7PBZ0_CHIPD Length = 481 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 124/323 (38%), Positives = 185/323 (57%), Gaps = 17/323 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G + V E + +APLD VL++GE GTGKE +A+ +H+LS R PF+ +NC Sbjct: 167 EGIIGSSIPMQRVFELIRQVAPLDTSVLVLGETGTGKEGVANCIHHLSPRKAKPFVKVNC 226 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL +L++SELFGHE GAFTGA ++ G+FERADGGT+FLDE+ P +Q KLLRV++ Sbjct: 227 AALPTHLIESELFGHEKGAFTGALEKRIGKFERADGGTIFLDEIGDMPADLQVKLLRVLQ 286 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ER+GG+ P++VNVR++ ATN +L + EG FR DL RL + L LRER D Sbjct: 287 EKEIERIGGNGPIKVNVRIIAATNRNLEKEIAEGRFRLDLYYRLHVFPIMLSALRERRDD 346 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ +F + A L++Y WPGN+REL+N++ERSV S Sbjct: 347 IPLLIAHFIRLYASATGKGV-SDIAPAALRQLMDYAWPGNVRELQNLIERSVLLSRESII 405 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK-- 303 + + +V + T++ + D++ + E+E + L++ + Sbjct: 406 REVILPV------------SVKKETTVVSTETDIKTIV-ELEREHILTVLKKCNHKISGP 452 Query: 304 -RAAELLGLTYHQFRALLKKHQI 325 AAELL L + +KK I Sbjct: 453 GGAAELLNLPPSTLASKMKKLGI 475 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 476 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 141/322 (43%), Positives = 193/322 (59%), Gaps = 12/322 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +++ ++G S V +QV +A + VLI+GE GTGKELIAS +HY S R P + L Sbjct: 207 FENMVVGHTASMRRVFDQVRRVAKWNSTVLILGESGTGKELIASAIHYNSPRAHQPLVRL 266 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAAL E LL+SELFGHE GAFTGA K+ GRFE+ADGGTLFLDE+ M Q KLLRV Sbjct: 267 NCAALPETLLESELFGHEKGAFTGAVKQRKGRFEQADGGTLFLDEIGEISPMFQAKLLRV 326 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ GELERVGGSQ ++VNVR+V ATN DL V +G FR DL RL +++PPLRER Sbjct: 327 LQEGELERVGGSQTVKVNVRIVAATNRDLEHEVEQGKFREDLYYRLNVMAIRVPPLRERS 386 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 +DI +AE+ ++ R+ L T+ A L+++RWPGN+REL+N +ERS Sbjct: 387 ADIPELAEFLLDKIARQQGRKL--KLTDSALRLLMSHRWPGNVRELENCLERSAIMSEDG 444 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 D + + T P +DL + + ++E + +L+Q + Q Sbjct: 445 TISRDVVSLTGLDH---------DATPLAPVPEVDLADDSLD-DRERVIAALEQAGWVQA 494 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA LLG+T Q ++ I Sbjct: 495 KAARLLGMTPRQIAYRVQTLNI 516 >UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis family n=1 Tax=Persephonella marina EX-H1 RepID=C0QPW4_PERMH Length = 443 Score = 476 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 185/323 (57%), Gaps = 10/323 (3%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 E ++G + + +V + + AP D PVLIIGE GTGKEL A +H S+R PF+ Sbjct: 126 EENKEMIGTSEAMKKVFQLIRKFAPTDYPVLIIGETGTGKELTARAIHERSNRADKPFVV 185 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAA+ +LL++ELFG+E GAFTGA K+ G+ E A+GGTLFLDE+ P +Q K+LR Sbjct: 186 VNCAAIPHDLLEAELFGYEKGAFTGADKKRIGKIEYANGGTLFLDEIGDMPYDLQSKILR 245 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 ++ ER+G ++ +VR++ ATN DL V EG FR DL RL+ ++LPPLR+R Sbjct: 246 FLQEYTFERIGSNETKTADVRIIAATNVDLDQAVKEGKFRRDLYYRLSVLTIKLPPLRDR 305 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 D ++MA+YF + +E+ + G T A E + ++ WPGN+REL N + ++V Sbjct: 306 GEDPVIMAKYFVERYSKELGKNI-KGLTADALEVIRDHPWPGNVRELINTIRKAVVLTDK 364 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 ++D+ + + + L+L+ E+ LL+ + K N Sbjct: 365 EFIDVEDLDLK---------VKCNPQGSGNGEDILNLKRNIEDLERRLLKEAFILAKGNI 415 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 + A++LG++ + L++KH I Sbjct: 416 SKVAKMLGISRPKVYKLMEKHGI 438 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 476 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 119/322 (36%), Positives = 180/322 (55%), Gaps = 1/322 (0%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 Y + ++G + V +A +LI GE GTGKELIA +H S R PF+ + Sbjct: 142 YFERIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTGKELIARAIHEQSDRANHPFVVV 201 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NC + ENL++SELFGH G+FTGA G F A GT+FLDE+ M +Q KLLRV Sbjct: 202 NCGGIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHKGTIFLDEIGELSMPLQVKLLRV 261 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ G ++VGG++ + V+ R++ ATN +L V +G FR DL RL + +PPLRER+ Sbjct: 262 VQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDGNFREDLFYRLNVIELNVPPLRERK 321 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 SDI ++A++F + +++ + + A + L Y +PGN+REL+N++ERSV T+ Sbjct: 322 SDIRVLAQFFVEKFSKDLGKEVIK-LSSYALDMLEKYSFPGNVRELENLIERSVALSTTN 380 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + + + KRR E T + L E E+ L+ +L+ N+ Sbjct: 381 IILPESLSLAVHKRRWIEGVPGRRFDLEEVTKGVALDEILADIERAYLKKALESSGGNKN 440 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 RAAELLG+++ FR L K + Sbjct: 441 RAAELLGISFRSFRYRLDKLNV 462 >UniRef50_B8DLL1 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DLL1_DESVM Length = 350 Score = 476 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 124/342 (36%), Positives = 176/342 (51%), Gaps = 25/342 (7%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 ++G++ S +V ++ +AP D VL+ GE GTGKEL+ LH S R PF+ +N Sbjct: 5 TSGIIGQSTSLRDVFRILAKVAPTDSTVLVTGESGTGKELLVRALHSNSQRRSMPFVPIN 64 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A+ + LL+SELFGHE GAFT A + PGRFE ADGGT+FLDE+ + +Q K+LRV+ Sbjct: 65 CGAIPKELLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLTLQVKILRVL 124 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ERVGG+ +V+VR+V ATN DL V G FR DL RL + LP LRER Sbjct: 125 QEKEIERVGGAGVKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHLPALRERGG 184 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI+++AE+F + C R+ L Y WPGN+REL+N +ER Sbjct: 185 DILVLAEHFMRRFCERKGRRCL-ALAPDTRKVLAAYSWPGNVRELENFMERLSILADDDV 243 Query: 245 YPLDDI------------------------IIDPFKRRPPEDAIAVSETTSLPTLPLDLR 280 P D+ + + T L ++L+ Sbjct: 244 VPPADLPRKILDEVGDIVSLPEPTPPDPLPVATGAASGGMPAGFSWPTITDLRDKGMNLK 303 Query: 281 EFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKK 322 +F E+ LL +L + + +AAE+LG+ LKK Sbjct: 304 DFLDTVEERLLDEALTMAEGVKNQAAEILGIKRTTLIEKLKK 345 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 476 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 124/319 (38%), Positives = 171/319 (53%), Gaps = 1/319 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +G + +V Q++ +AP V + GE GTGKEL A +H S+R PFISLNCA Sbjct: 193 GFVGNSEGMQKVYAQIAQVAPSVTTVFLQGESGTGKELAARAIHSGSARAGKPFISLNCA 252 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL ENL++SELFGHE GAFTGA GRFE A GGTLFLDE+ +M Q KLLRV++ Sbjct: 253 ALPENLIESELFGHERGAFTGASATRKGRFELAHGGTLFLDEVGELSLMTQAKLLRVLQE 312 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ER+GG + V+VR + ATN +L MV + +FR DL RL + LPPLR R DI Sbjct: 313 RAFERLGGMETHYVDVRFITATNRNLEHMVAKESFRRDLFYRLNVFPIYLPPLRGRPEDI 372 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +A +F + + + + L Y WPGNIREL+NV+ER+V G Sbjct: 373 LPLANHFIRKFAQANGRENVR-LSLSVMDMLQRYAWPGNIRELENVMERAVLLLGREGLV 431 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 L + S + P L++ + E+ + +L+ + +AA Sbjct: 432 LPQHLPPALHGAHCAGISGESACAARPGFSGSLQDQLDELERASIVEALEFSQGQMGKAA 491 Query: 307 ELLGLTYHQFRALLKKHQI 325 LGLT +KK++I Sbjct: 492 ASLGLTERIMALRMKKYEI 510 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 476 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 120/320 (37%), Positives = 176/320 (55%), Gaps = 17/320 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G++ + EV + ++ + D VLI GE GTGKELIA +HY S R PF+ + C Sbjct: 190 DEIVGQSPAMREVFDTMARVLDTDATVLIEGESGTGKELIARAIHYNSERKDKPFVVVFC 249 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +L + LL+SELFG++ GAFTGA G FE ADGGT+FLDE+ +Q LLRV++ Sbjct: 250 GSLPDELLESELFGYKKGAFTGALSDKKGLFEVADGGTVFLDEVGDLSPRMQTALLRVLQ 309 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE+ RVG +Q +V+VR++ ATN L +V +G FR DL RL + +PPLR R D Sbjct: 310 EGEIRRVGDTQVRKVDVRVISATNKPLRELVQQGKFREDLYYRLNTIQITVPPLRHRRGD 369 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A +F + + K GFT A E L Y WPGN+REL+N +ER+V Sbjct: 370 IPLLAHHFLDKYAVK-KRAHIKGFTPEALELLERYHWPGNVRELENTIERAVVLARGELI 428 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 +D+ + P + P LPL + E+ ++ +L++ N Sbjct: 429 TPEDLRLPDTDGADPFE----------PDLPL------KEVERRVVLRTLKRHGGNISET 472 Query: 306 AELLGLTYHQFRALLKKHQI 325 A +LG++ LK+ + Sbjct: 473 ARVLGVSRRWLHYKLKEWDV 492 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 120/320 (37%), Positives = 180/320 (56%), Gaps = 14/320 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G+ F+E + + A D VLI+GE GTGKE++A +H S R PFI++NC Sbjct: 335 DMIGQHPCFIEKMNEARLAAATDSNVLILGESGTGKEMVAQAIHNESKRRNKPFIAINCG 394 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRH-PGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 + +LL SELFG+ GAFTGA+K G+FE A+GGTLFLDE+ + +Q LLRVI+ Sbjct: 395 GIPRDLLGSELFGYVDGAFTGAKKGGSAGKFELANGGTLFLDEIGEMSLEMQVLLLRVIQ 454 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ R+GG + + V+VR++ ATN DL V +G+FR DL RL + LPPLRER+ D Sbjct: 455 EKEVMRIGGHKVIPVDVRIIAATNKDLRREVQKGSFREDLFFRLNVMPIVLPPLRERKED 514 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ +F ++ + P FP E L+ Y WPGNIREL+N++ER + + Sbjct: 515 IPLLVRHFIERLAHKRDKP-FPEIRSDFLEALMQYDWPGNIRELQNMIERVLNQCTKPVL 573 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D+ P + P + V E + + + +K+ + +L+Q N +A Sbjct: 574 TAADL---PEEIFQPSCSSQVRENVDI---------SRNEIKKQSIIEALKQCNGNISKA 621 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LG++ F + K I Sbjct: 622 ARYLGISRSTFYRQMDKWNI 641 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 120/319 (37%), Positives = 185/319 (57%), Gaps = 12/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++GE+ ++ + +SH++ + +LI GE GTGKEL+A +HY S+R F+ ++C+ Sbjct: 142 NIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELVAKAIHYNSARNNHRFVKVDCS 201 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 +L E LL+SELFGHE GAFTGA K GRF +AD GT+FLDE+ + VQ KLLRV++ Sbjct: 202 SLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIFLDEIGNISLAVQAKLLRVLQD 261 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E E VG + ++V+VR++ ATNADL V +G FR+DL RL + LPPLRER DI Sbjct: 262 SEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFYRLNVIRIFLPPLRERTEDI 321 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A +F ++ GF+ L +Y WPGNIREL+NV+ER+V + Sbjct: 322 PLLAAHFLAIHNKK-NRKTVEGFSRDTLNILTSYAWPGNIRELENVIERAVILCKKNRIT 380 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 +D+ + K L+E Q E++++ +L+ ++++ A Sbjct: 381 PEDVPLYQEKMGTRPGLSGKP-----------LQELLEQTERQIIINTLEANDADKEKTA 429 Query: 307 ELLGLTYHQFRALLKKHQI 325 ++L ++ L K++I Sbjct: 430 KILKISRASLYNKLNKYKI 448 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 475 bits (1225), Expect = e-133, Method: Composition-based stats. Identities = 130/356 (36%), Positives = 191/356 (53%), Gaps = 35/356 (9%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 E ++G FL +LE+ +A VL++GE GTGKE+ A +H++S R GPF++ Sbjct: 147 EGSRTVIGRDRHFLRLLERARTVASSKATVLVLGESGTGKEVFARFIHHVSDRKAGPFVA 206 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 LNCAAL E LL+SELFGHE GAFTGA G+FE A GGTL LDE+ P+ +Q KLLR Sbjct: 207 LNCAALPEGLLESELFGHEKGAFTGAVMAKKGKFELAHGGTLLLDEIGEVPLHLQAKLLR 266 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E++R+GG +P++V+V +V TN DL V +GTFR DL RL ++LP LRER Sbjct: 267 VLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEAVKDGTFRQDLYYRLNVIPIRLPSLRER 326 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+A++F + R PL + AR+ L+Y WPGN+RE++N++ER V Sbjct: 327 PDDIFLLADFFIEKHSRRYNKPL-KKLSAAARQRFLDYDWPGNVREMENLLERGVLLSNG 385 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLRE--------------------- 281 + L D D P A + P+D E Sbjct: 386 DELELWDFWDDELPPEPAASAELPEPSGPADAEPVDAAEPEASPPTVATEAVAAEASGSP 445 Query: 282 -------------FQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 + E++++ +L+Q N+ AA++LG++ R L +++ Sbjct: 446 DSAATLDSALAGRSLREVERQMILQALRQTDDNRTHAAKMLGISVRTLRNKLNEYR 501 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 475 bits (1225), Expect = e-133, Method: Composition-based stats. Identities = 119/320 (37%), Positives = 177/320 (55%), Gaps = 7/320 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G + + V E++ +A VL+ GE GTGKEL+A +H LS R PF+ ++C Sbjct: 145 EKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKELVAHAIHQLSPRKNFPFVVVHC 204 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL+ LL+SELFGHE GAFTGA +R GRFE A GTLFLDE+ + Q KLLR + Sbjct: 205 AALSPQLLESELFGHEKGAFTGAIERRIGRFEEAARGTLFLDEIGEIDLPTQVKLLRALG 264 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ++RVG ++ + V+VR++ ATN +L MV EG FR DL RL + +PPLRER+ D Sbjct: 265 EKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFREDLFFRLNVVRIVMPPLRERKED 324 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A+ F + E + + A + LL Y WPGN+RELK +E V + Sbjct: 325 IPLLAQAFLAEFAAENGKKIDR-LSPEAMKILLEYDWPGNVRELKMAIEHGVVLCQGEEI 383 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D+ RP A E++ L + EK L+ +L+ + + A Sbjct: 384 RPRDLPERIRIPRPLLSAPISVESSEPDCFNL------KEAEKRLILHALRVCQGKKTSA 437 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+ LG++ + +K+ ++ Sbjct: 438 AKKLGISRKTLQRKIKQFEL 457 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 475 bits (1225), Expect = e-133, Method: Composition-based stats. Identities = 130/325 (40%), Positives = 190/325 (58%), Gaps = 13/325 (4%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A+ N +G++ ++VL S A VLI GE GTGKE+IA +HY S R +GPFI Sbjct: 247 AQAFANYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRRRGPFI 306 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NC A+ LL+SELFGHE GAFTGA +R G+FE A+ GT+FLDE+ +Q KLL Sbjct: 307 RVNCGAIPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNLQVKLL 366 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ E +RVGG + + V+VR++ ATN DL AMV EGTFR DL RL + LPPLR+ Sbjct: 367 RVLQQKEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRD 426 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI L+ E+F ++ +E G T A + ++YRWPGN+REL+NV+ER + Sbjct: 427 RPDDIPLLVEHFIEKISKE-NKKDVRGITPDAMQMFMHYRWPGNVRELENVIERVITLMD 485 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQ-GKY 300 T + + ++++ T LP + EK+++ +L+Q + Sbjct: 486 TDLITAAMLPSYIKGDIAGREVQSLADDTVLPW---------EEYEKQIIANALRQGTSF 536 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N AA+LL +++ A +K+ + Sbjct: 537 N--GAAKLLRISHKTVAAKARKYGL 559 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 475 bits (1225), Expect = e-133, Method: Composition-based stats. Identities = 116/319 (36%), Positives = 179/319 (56%), Gaps = 1/319 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + L++ E + +AP VLI GE GTGKEL+A +H LS Q F+ + C+ Sbjct: 142 GIIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGKELVARAIHQLSPAVQHQFVPIICS 201 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E+L +SELFGH GAFTGA G FE+A+ GT FLDE+ + Q KLLRV++ Sbjct: 202 AIPESLFESELFGHAKGAFTGATTNRTGLFEQANYGTAFLDEIGELTPLTQTKLLRVLQE 261 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++RVG S +++N R++ ATN DL V G FR DL RLA +++PPLRER+SD+ Sbjct: 262 REIKRVGESVAIRINFRMISATNRDLEEEVAAGRFREDLFYRLAVVPIRVPPLRERKSDV 321 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ E+F + R + + A E L+NY +PGN+REL+N++ER V + Sbjct: 322 PLLVEHFLAKYSRLFGKDIRK-ISSYALELLMNYDFPGNVRELENIIERGVAMENSQIIL 380 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + + + + L E++++ +LQ+ ++ RAA Sbjct: 381 PESLTLTGRRHGGQPAPADDRGSLEADVFNRGLEPALTDFERQMIIKALQKAGNSKTRAA 440 Query: 307 ELLGLTYHQFRALLKKHQI 325 ELL ++ R +KK++I Sbjct: 441 ELLNTSFRSLRYKIKKYEI 459 >UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YRB5_AZOPC Length = 521 Score = 475 bits (1224), Expect = e-133, Method: Composition-based stats. Identities = 123/320 (38%), Positives = 191/320 (59%), Gaps = 12/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++G + E+ V +AP + V+I GE G GKELIA +H SSR + PF+ +NC Sbjct: 203 DNMVGNSALMRELYGLVKRVAPTNSTVIIRGESGVGKELIAEAIHKASSRIKKPFVRVNC 262 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +AL ENL++SELFG+E GAFTGA+++H GRFE ADGGT+FLDE+A P VQ KLLR+++ Sbjct: 263 SALPENLIESELFGYEKGAFTGAERQHSGRFELADGGTIFLDEIADIPFSVQVKLLRILQ 322 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + ER+GG+ +Q +VR+V ATN +L M+ TFR DL R+ + +P LRER +D Sbjct: 323 QRQFERIGGTHTIQTDVRIVTATNRNLEEMLQNNTFREDLYYRIHVFPIYVPALRERRAD 382 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I ++ ++F ++ ++ T A + L+ Y WPGN+REL+NV+ER++ Sbjct: 383 ITILTDHFIQKINKQ-NQTNVKRITSGALDMLMMYSWPGNVRELENVIERAMILTT---- 437 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D +I + P S+T + L L L + E++++ +L + N ++ Sbjct: 438 ---DDVIHSYNLPPSLQTGVSSDTVKVGRLDLVLG----KVERQMIMDTLIANRGNVAKS 490 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LG++ +K++ I Sbjct: 491 AFQLGISERVMGLRIKRYNI 510 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 475 bits (1224), Expect = e-133, Method: Composition-based stats. Identities = 121/323 (37%), Positives = 180/323 (55%), Gaps = 3/323 (0%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + L+G+ + ++ E VS LA D VLI GE G GKE++A LH SR P +S Sbjct: 140 DQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVLAKALHKSGSRSGKPLVS 199 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NC A+ E LL+SELFGH GAFTGA + PGRFE A+GGT+FLDE+ +Q KLLR Sbjct: 200 INCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIFLDEIGDMSAKLQVKLLR 259 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E VG Q + V+VR++ AT+ DL A + G FR DL RL + LPPLRER Sbjct: 260 VLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDLYYRLNVIPLTLPPLRER 319 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI+L+ ++F + ++ K G ++ + +LNY+WPGN+REL+N++ER Sbjct: 320 GDDILLLTDHFITRFNQQ-KKADITGVSDEVKRIILNYQWPGNVRELQNLIERVTTLKRH 378 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 L+D+ + E + +DL+ + E L+ +LQ+ ++N+ Sbjct: 379 GIMELEDLPSRMISDK--ERVLQSFRMDVENAECIDLKSTVDEFESHLILSALQRFQWNK 436 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 +AA L + +KK + Sbjct: 437 NQAANFLAMNRTTLVEKIKKKGL 459 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 475 bits (1224), Expect = e-133, Method: Composition-based stats. Identities = 126/321 (39%), Positives = 183/321 (57%), Gaps = 12/321 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DNL+G+++ L + E V +A VLI GE GTGKEL+A LH S+R GPF+ +NC Sbjct: 280 DNLIGKSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLAHSLHVGSNRCLGPFVKVNC 339 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ ENLL+SELFG+ GAFTGA+K G+FE+A+GGT+FLDE+ P+++Q KLLRV+ Sbjct: 340 AAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQANGGTIFLDEIGDMPLLMQAKLLRVL 399 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ER+G ++ V VR+V ATN L M+ + TFR DL RL +Q+P LRER Sbjct: 400 QEKEIERLGDNRARHVEVRVVAATNRPLEQMIADNTFREDLYYRLNVVTLQIPSLRERID 459 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D+ + EYF + L + G + A E NY WPGN+REL+NVVER+ Sbjct: 460 DLKDLVEYFLAKYNHAFGLNI-TGLSADALELFENYNWPGNVRELENVVERAFNLVDGHI 518 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + + K + ++ L Q EKE + +L N+ + Sbjct: 519 IDVMHLPPYLQKFGK----------SKRHSINKSLPSLLEQVEKEAIADALSVTNGNKMQ 568 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA++LG++ + ++ I Sbjct: 569 AAKILGISRAWLYKKIAQYGI 589 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 121/321 (37%), Positives = 183/321 (57%), Gaps = 14/321 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+++GE+ + + +LI+GE GTGKE+ + +H S R GP+I +NC Sbjct: 394 DDIIGESPRMKKAKSLAHRASQTTSTILILGESGTGKEVFSHAIHKSSIRSNGPYIKVNC 453 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AAL E+LL+SELFG++ GAFTGA+K PG+FE AD GT+FLDE+ + +Q KLLRV+ Sbjct: 454 AALPEDLLESELFGYDEGAFTGARKGGKPGKFELADKGTIFLDEIGDMSLGMQAKLLRVL 513 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + ELER+GG++P++V+VR++ ATN DL MV E FR DL RL + LPPLRER+ Sbjct: 514 QERELERLGGTEPIKVDVRIIAATNRDLHKMVMEHKFRLDLYYRLNVLTIDLPPLRERKE 573 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI +A ++ + + + G + L Y WPGNIREL+N++ER++ + Sbjct: 574 DIGFIARGLIEKINKRLGTDI-QGVRPESITHLCAYDWPGNIRELENILERAIVICDEAW 632 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + + V ET +L L E+E+L +L++ + N+ + Sbjct: 633 ILPKHLAL-----------PGVMETITL-GAEQTLEYALQAAEREILDKTLRRVQGNKVQ 680 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA +LG+ L K+ I Sbjct: 681 AARILGIHRSVLYKKLAKYNI 701 >UniRef50_A5F6B9 Flagellar regulatory protein A n=61 Tax=Gammaproteobacteria RepID=A5F6B9_VIBC3 Length = 488 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 122/353 (34%), Positives = 185/353 (52%), Gaps = 36/353 (10%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +L+G++ EV + ++ + VLI+GE GTGKE++A +HY S R GPF+ +NC Sbjct: 136 SLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCG 195 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ LL+SELFGHE GAFTGA GRFE A+GGTLFLDE+ PM +Q KLLRV++ Sbjct: 196 AIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQE 255 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVGG+ ++ NVR++ AT+ +L M++ FR DL RL +++P LR+R DI Sbjct: 256 RCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDI 315 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ + +M E P+ FT RA +++ + WPGN+REL N+VER V + S Sbjct: 316 PLLLQELMTRMEAEGAQPIC--FTPRAINSMMEHDWPGNVRELANLVERMVILYPNSLVD 373 Query: 247 LDDIII----------------------------------DPFKRRPPEDAIAVSETTSL 272 ++ + D P E + +L Sbjct: 374 VNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQAL 433 Query: 273 PTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 P ++L+E E L+ +L+ RAA++LG+ ++K+ + Sbjct: 434 PPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTLVEKMRKYNM 486 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 122/323 (37%), Positives = 180/323 (55%), Gaps = 21/323 (6%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++ ++ +F +VL V +AP + VLI+GE GTGKEL+A +H LSSR P + +NC Sbjct: 180 DEIVTQSKAFQKVLRSVEQVAPTNTTVLILGESGTGKELLARAVHNLSSRKNKPLVKINC 239 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL L++SELFGHE GAFTGA + GRFE ADGGT+FLDE+ P+ +Q KLLRV++ Sbjct: 240 AALPATLIESELFGHEKGAFTGATAQKVGRFELADGGTIFLDEIGEMPLDLQAKLLRVLQ 299 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE ERVG ++ ++VNVR++ ATN DL EG FR DL RL+ + PLR R+ D Sbjct: 300 EGEFERVGSTKTMKVNVRVIAATNRDLEIESAEGRFREDLYYRLSVFPIVSLPLRTRKED 359 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ +F + ++ + +TL +Y WPGNIREL+N+V+R++ Sbjct: 360 IPLLVRHFCAKHGADMGKTIDT-IPATVLDTLTDYHWPGNIRELENLVQRALIMSPGRTL 418 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK-- 303 + D + +++P + A T + E+ + L+ + Sbjct: 419 VIGDWL----RKKPLANQKATLMT-------------MEEAERAHIISVLELTHWKVSGD 461 Query: 304 -RAAELLGLTYHQFRALLKKHQI 325 AA LL + + +KK I Sbjct: 462 NGAARLLDMIPTTLDSRMKKLGI 484 >UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3921 Length = 527 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 129/326 (39%), Positives = 187/326 (57%), Gaps = 7/326 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++G++ + EVL+QV +AP D VL+ GE GTGKEL+A +H LS+R + F+ LNC Sbjct: 190 HEVVGDSRTLQEVLKQVEVVAPTDSAVLVTGETGTGKELVARAVHRLSARSERTFVKLNC 249 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ LL+SELFGHE GAFTGA +R GRFE ADGGTLFLDE+ P +Q KLLRV++ Sbjct: 250 AAIPTGLLESELFGHEKGAFTGAVERRLGRFELADGGTLFLDEVGDIPQELQPKLLRVLQ 309 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ER+G ++ ++VNVRLV AT+ +L +V EG FR+DL RL V LP LR+R D Sbjct: 310 EQEFERLGSAKTVKVNVRLVAATHRNLAKLVAEGKFRSDLYYRLHVFPVHLPALRDRRED 369 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + +F + + A L Y WPGN+REL++++ER+V S+ Sbjct: 370 IPSLVRHFVALFAQRFGKRI-ETIPAEAMAALERYAWPGNVRELQHLIERAVILTTGSEL 428 Query: 246 PLDDIIIDPFKRRP---PEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + P P P A+A++ + P P + E++L++ +L + + Sbjct: 429 RVPLGELTPTTAEPPSHPRPAVALTIPPTSPAEPPPQFNALRESERDLIRRALDRCGWVI 488 Query: 303 ---KRAAELLGLTYHQFRALLKKHQI 325 AA LGL + +KK + Sbjct: 489 GGPNGAAAQLGLKRTTLLSRMKKLGL 514 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 113/320 (35%), Positives = 182/320 (56%), Gaps = 17/320 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+++G++ + + A + VLI+GE GTGKEL+A +H S R + PFI +NC Sbjct: 255 DDIIGDSPELRKCITLAEKSAQSNSTVLILGESGTGKELLAHAIHAASMRRENPFIKVNC 314 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ + LL+SE FG+ GAFTGA K G+FE A GGT+FLDE+ +++Q KLLRV++ Sbjct: 315 AAIPDTLLESEFFGYAKGAFTGAVKSKIGKFELAHGGTIFLDEIGDMNLLLQAKLLRVLQ 374 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ERVGG+Q ++V+VR++ ATN +L ++ +G FR DL RL + +PPLR R+ D Sbjct: 375 EMEFERVGGNQTIKVDVRVIAATNRNLRELIRQGRFREDLYYRLNVVEITMPPLRARKED 434 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + + + + R++ + G ++ A E L +Y WPGN+REL+NV+ER + Sbjct: 435 LPALVSHLITSLNRKLGKNV-KGISKDAEEVLFSYDWPGNVRELENVIERVMVTADEEIL 493 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY---NQ 302 + I + R +S + +P+ Q E+ L++ ++ + + Sbjct: 494 TKKNFIQHVNQFR-------MSSERDVDLMPI------EQMEEMLIRKAISKFGNTVEGK 540 Query: 303 KRAAELLGLTYHQFRALLKK 322 +RAA+ L ++ LKK Sbjct: 541 RRAAQALNISLATLYNKLKK 560 >UniRef50_D2L1Y0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1Y0_9DELT Length = 505 Score = 474 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 124/350 (35%), Positives = 185/350 (52%), Gaps = 33/350 (9%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++GE VL +A VLI GE GTGKE+ A LH S R +GPF+++NCA Sbjct: 150 SIVGEHPLIRRVLGLARQVARSKATVLISGESGTGKEMFARYLHACSDRAEGPFVAINCA 209 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E+LL+SELFGHE G+FTGA R G+FE A GGT+ LDE++ + +Q KLLRV++ Sbjct: 210 ALPEHLLESELFGHEKGSFTGAIARKLGKFEMASGGTILLDEISEMDLGLQAKLLRVLQE 269 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E +RVGG++ +QV+VR++ TN L V EG FR DL RL ++LPPLR+R D+ Sbjct: 270 SEFDRVGGTETVQVDVRVLATTNRRLEEAVAEGKFRQDLYYRLNVIPLKLPPLRDRGEDV 329 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +A +F + + L F+ A++ L+ Y WPGN+REL+N++ER+V G Sbjct: 330 PRLALFFVDKFRKAYGLSPLT-FSADAKQWLMAYDWPGNVRELQNLMERAVLLAGDGPIR 388 Query: 247 LDDIIIDPFK------RRPPEDAIAVSETTSLPTLPLDLRE------------------- 281 ++D P+D E + L E Sbjct: 389 KAHFLLDGDNWQEAGPEAGPDDGFGGREPGAAAGLAAVAGEDGEGDGLAAAARLFDRAPA 448 Query: 282 -------FQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 E+ ++ SL + + N+ +AA+LLG++ R L +++ Sbjct: 449 DVSGELLPLDVMERHMIIKSLDRTEGNRTQAAQLLGISVRTLRNKLNEYR 498 >UniRef50_Q3A103 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A103_PELCD Length = 467 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 130/319 (40%), Positives = 192/319 (60%), Gaps = 8/319 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDK-PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +++ + +VLE V +A D V I GE GTGKEL+A +HY S+R PF+++NC Sbjct: 154 SIVACSREMGQVLEMVDKIASSDAATVFIQGESGTGKELVARAIHYQSARASQPFMAINC 213 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ + LL+SEL GHE GAFT A+ G FE ADGGT+FLDE+ +Q KLLRV+E Sbjct: 214 AAVPQTLLESELMGHEKGAFTDAKNVKKGLFELADGGTVFLDEIGDMDPAMQAKLLRVLE 273 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 RVGG++ ++V+VR+V ATN DL + + +FR DL R+ VQ+PPLRER D Sbjct: 274 ERTFRRVGGTRDIKVDVRIVSATNRDLHKAMEDKSFRPDLYYRIGVIPVQIPPLRERRDD 333 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I+ +AE+F Q RE + G + A++ LL Y WPGNIREL+NV+ERSV Sbjct: 334 ILPLAEFFIRQFNREFNKKV-RGISRMAQKILLEYSWPGNIRELRNVIERSVILECEEQL 392 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 ++++ + + ++ ++ LP +D+ + E+EL++ +L+ + NQ +A Sbjct: 393 LVENLPRELVAQSVGDNIGPLN--FQLPPEGVDIEDI----ERELIRQALEMAQGNQTQA 446 Query: 306 AELLGLTYHQFRALLKKHQ 324 A+LL L FR +KK Sbjct: 447 AKLLRLGIDAFRYRMKKFG 465 >UniRef50_Q1MPA8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Desulfovibrionaceae RepID=Q1MPA8_LAWIP Length = 492 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 121/345 (35%), Positives = 189/345 (54%), Gaps = 29/345 (8%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + VL +AP VLI GE GTGKE+ A LH S+R +GPFI++NCAA Sbjct: 143 IIGSNPAIRRVLALAKQVAPSKASVLISGESGTGKEMFARTLHAWSNRSKGPFIAVNCAA 202 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E+LL+SELFGHE G+FTGA R G+FE A GGT+ LDE++ + +Q KLLRV++ G Sbjct: 203 LPEHLLESELFGHEKGSFTGAIARKLGKFELASGGTILLDEISEMDLALQSKLLRVLQEG 262 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++RVGG++ ++V+VR++ TN D+ V+EG FR DL RL ++LP L ER DI+ Sbjct: 263 EIDRVGGTETIKVDVRVLATTNRDMEKWVDEGKFRQDLFFRLNVIPLRLPSLAERGDDIL 322 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +A +F +E L ++ A L N+ WPGN+REL+N++ER+V G Sbjct: 323 ELANFFINMYTKEYHLKPTK-LSQEATTWLKNHNWPGNVRELQNLMERAVLLAGGGLITP 381 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREF------------------------- 282 + +++ + ++ +T S+ + + Sbjct: 382 NHFLLETEEWPLFDEVPLEQQTESIIPEVITISNTTQALQTHPQSKSTTATTTSSVFPNA 441 Query: 283 ---QMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 + E+ ++ L+ N+ +AAELLG++ R L +++ Sbjct: 442 VIPLHEMERLMIIKGLEATSGNRTQAAELLGISIRTLRNKLNEYK 486 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 132/326 (40%), Positives = 193/326 (59%), Gaps = 9/326 (2%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + + D ++G + + L S A D VLI GE GTGKEL+A+ +HY S R PF Sbjct: 224 LDKAFDIIIGNSGKLKDALTIASKAAETDSTVLIRGESGTGKELVANAIHYASKRKDKPF 283 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I +NCAA+ LL+SELFGHE GAFTGA + G+FE ADGGT+FLDE+ P +Q KL Sbjct: 284 IRVNCAAIPVTLLESELFGHERGAFTGAVTQKIGKFELADGGTIFLDEIGDIPPEIQVKL 343 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRVI+ E ERVGG + ++V+VR++ ATN DL + EGTFR DL RL V LPPLR Sbjct: 344 LRVIQEKEFERVGGIKTIKVDVRIIAATNKDLEKAIKEGTFREDLYYRLNVIPVILPPLR 403 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI L+ E+F ++ +++ + T++A + L+ Y WPGNIREL+N++ER + Sbjct: 404 ERRGDIPLLVEHFIEKLNKKLNKNVKKV-TKKAMQALIYYDWPGNIRELENIIERCITLS 462 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGK- 299 T +D+ P R ++ + L L + E ++++ ++Q+ K Sbjct: 463 DTDYIDYEDL---PQYIRNETTTVSDDDIIYLGENSELL--TMEEYEYKIIKAAIQRYKS 517 Query: 300 YNQKRAAELLGLTYHQFRALLKKHQI 325 +N+ A ++LGLT+ A +K + Sbjct: 518 FNK--AGKVLGLTHKTIAAKARKFGL 541 >UniRef50_B8J0D0 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrionaceae RepID=B8J0D0_DESDA Length = 379 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 135/377 (35%), Positives = 190/377 (50%), Gaps = 56/377 (14%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 MA D ++G++ S EV + + +AP D VL+ GE GTGKEL+ LH SSR PF Sbjct: 1 MALNTDGIIGQSTSLAEVFKVLGKVAPTDSTVLVTGESGTGKELLVRALHSNSSREDKPF 60 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + +NC A+ + LL+SELFGHE GAFT A + PGRFE ADGGT+FLDE+ + +Q K+ Sbjct: 61 VPINCGAIPKELLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLSLQVKI 120 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E+ERVGGS +V+VR+V ATN DL A V G FR DL RL + LPPLR Sbjct: 121 LRVLQEKEIERVGGSGSKKVDVRIVAATNRDLEAEVAAGRFREDLYYRLNVIPLHLPPLR 180 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER D++++A +F C + K P+ + AR L Y WPGN+REL+N +ER Sbjct: 181 ERGGDVLVLARHFLTHFCGKKKRPVL-VLDDDARRVLSAYTWPGNVRELENFMERLSILV 239 Query: 241 GTSDY--------------------PLDDIIIDPFKRRPPEDAIAVSETTSLPTL----- 275 ++DI + E+ +A + +T + + Sbjct: 240 DGDVVHPQDLPGKILDQVGDIASLPEVEDIAAGADEAGAVENIVAAAPSTGMDAVENEKM 299 Query: 276 ------------------------------PLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 L L++F E L+ +L + + +A Sbjct: 300 AAASAAAPDNGAGQQAGTFVWPDLSVLEARGLTLKDFLDAVEGRLIDEALDKALGVKNQA 359 Query: 306 AELLGLTYHQFRALLKK 322 AELLG+ LKK Sbjct: 360 AELLGIKRTTLIEKLKK 376 >UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIC3_9BACT Length = 540 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 123/333 (36%), Positives = 187/333 (56%), Gaps = 15/333 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + L+G +VL++V + D VLI GE GTGKE++A +HY S+R + PF+++NC Sbjct: 205 EGLVGSGRLMRKVLDKVQMVTASDSAVLIRGESGTGKEVVAKTIHYNSNRRKKPFVAVNC 264 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ L++SELFG+ GAFTGA G+FE+ADGGT+FLDE+ PM Q KLLRV++ Sbjct: 265 AAIPGELIESELFGYSKGAFTGAAGEKKGKFEQADGGTIFLDEIGDMPMEAQSKLLRVLQ 324 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 +E++GG++P+QV+VR++ ATN +L A V G FR DL RL + LPPLR+R+ D Sbjct: 325 DKVVEKLGGTKPVQVDVRILAATNKNLEAAVQSGEFRLDLYYRLNVFAIFLPPLRKRKED 384 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I +A++ + + + A L+N +PGNIREL+N +ERS + G + Sbjct: 385 IPEIAQHILKNLSKRYNKNYT--ISPEAVTALMNCNYPGNIRELENCLERSAFTAGGGEI 442 Query: 246 PLDDIII---DPFKRRPPEDAIAVSETTSLPTLPL----DLREFQMQQ------EKELLQ 292 I + E+ ++ S T P D E + E+E + Sbjct: 443 KTKHISCMRGEMCMSHFMEEQLSGSSTAITPQTGGIPDNDYSEADNELISGNMDERERVV 502 Query: 293 LSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +L++ + Q +AA +L +T Q +KK I Sbjct: 503 QALEKAGWVQAKAARMLDMTVRQMNYRIKKFNI 535 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 123/324 (37%), Positives = 183/324 (56%), Gaps = 17/324 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G ++S V + +AP D VLI+GE GTGKELIA +H LS+R P + +NC Sbjct: 557 EEIIGTSSSMQTVFNAIGQVAPTDYTVLIMGETGTGKELIARAVHSLSARRDRPVVKINC 616 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL L++SELFGHE G+FTGA ++ G+FE A+GGTLFLDE+ P+ +Q KLLR I+ Sbjct: 617 AALPAQLIESELFGHERGSFTGATEKRIGKFELANGGTLFLDEIGELPLELQAKLLRAIQ 676 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ERVGG + +N R++ ATN +L V G FR+DL RL + +PPLRER+ D Sbjct: 677 EKEIERVGGKGVILINTRIIAATNRNLQQEVAAGRFRSDLYYRLNVFPIVVPPLRERQED 736 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I+ + +F ++ +++ P+ + + LL Y WPGNIREL++V+ERS ++ Sbjct: 737 ILPLTMHFLQKISKKLGKPI-TNIANASLQQLLQYPWPGNIRELEHVLERSSILSQSATL 795 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR- 304 L + + PP + E S+ + + +L + N+ R Sbjct: 796 TLAEPLRAATTAFPPFVVQSSEEVKSI-----------DDAMRLAILAALAKS-GNRIRG 843 Query: 305 ---AAELLGLTYHQFRALLKKHQI 325 AAELL + A +KK I Sbjct: 844 TGGAAELLNIKPTTLEARMKKLNI 867 >UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Gammaproteobacteria RepID=Q3J8M6_NITOC Length = 479 Score = 473 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 123/330 (37%), Positives = 174/330 (52%), Gaps = 13/330 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +L+G + + V + +A + VLI+GE GTGKE++A LHY SSR PF+ +NC Sbjct: 143 SLVGNSRATRTVRHLIEQVADSNATVLILGESGTGKEVVARNLHYHSSRRGNPFVPVNCG 202 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ LL+SELFGHE GAFTGA GRFE A GTLFLDE+ PM +Q KLLRV++ Sbjct: 203 AIPGELLESELFGHEKGAFTGAITARQGRFELAQKGTLFLDEIGDMPMAMQVKLLRVLQE 262 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVG ++ + V+VR++ AT+ +L + EG FR DL RL +++PPLRER DI Sbjct: 263 RTFERVGSNKLIHVDVRIIAATHRNLEEQLQEGNFREDLYYRLNVFPIEMPPLRERVEDI 322 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ ++ E + T A L Y WPGN+REL N+VER H Sbjct: 323 PLLINEIITRIEHEKGASV--RLTPAAVMALCQYPWPGNVRELANLVERLTILHPYGVVD 380 Query: 247 LDDII-----------IDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSL 295 D+ + E + ET LP LDL++ E+ L++ +L Sbjct: 381 HYDLPEKYRIEGEGISPSAPELASLERVVDTLETPRLPREGLDLKKHLSCIERSLIKQAL 440 Query: 296 QQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 ++ +AA L + L+K+ I Sbjct: 441 EEADGVVAQAAHRLRMRRTTLVEKLRKYDI 470 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 473 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 123/323 (38%), Positives = 176/323 (54%), Gaps = 19/323 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G + + VL+++ +AP D VLI GE GTGKELIA +H LSSR + F+ LNC Sbjct: 387 EEIVGRSQALRTVLQEIETVAPTDSTVLIYGETGTGKELIARAIHNLSSRSRNSFVKLNC 446 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ LL+SE+FGHE GAFTGA + GRFE A GT+FLDE+ P+ +Q KLLRV++ Sbjct: 447 AAIPTGLLESEMFGHEKGAFTGAVAQRIGRFELAHHGTVFLDEIGEIPLELQPKLLRVLQ 506 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ER+G S+ ++ + RL+ ATN DL MV + FRADL RL VQ+P LR+R D Sbjct: 507 EREFERLGSSRTMRTDARLIAATNRDLATMVEDRNFRADLFYRLNVFPVQVPALRDRPED 566 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ +F Q R + + L+ Y WPGNIREL+N++ER+V Sbjct: 567 IPLLVRHFVQQFARRMGKAVDT-IPTETMNVLVRYHWPGNIRELQNLLERAVILSAGPVL 625 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK-- 303 + ++ + + P A E E+ + +L+ + Sbjct: 626 KV---PLNDLQLQAPAPTTARKT------------ETLESAERRHILEALEAADWVISGP 670 Query: 304 -RAAELLGLTYHQFRALLKKHQI 325 AAE LGL +A ++K I Sbjct: 671 KGAAEALGLKRSTLQARMEKLGI 693 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 111/320 (34%), Positives = 179/320 (55%), Gaps = 9/320 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++ ++ E+ +++ +A D PVLI GE GTGKELIA+ + S R + P+I +NC Sbjct: 141 EGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIANAIQKQSLRKEKPYIKINC 200 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ E L +SELFG+E GAFTGA + G+FE A+GGT+F DE+ P+ +Q KLLRVIE Sbjct: 201 AAIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIFFDEIGDMPLSLQAKLLRVIE 260 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 G + R+GG +P+++NVR + AT+ +L ++ FR DL R+ + +PPL+ER+ D Sbjct: 261 DGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDLFYRINVMPIAIPPLKERKED 320 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I ++ E F + + A E LL+Y +PGN+RELK+ +ER++ Sbjct: 321 IPVLIEKFLKIFSEKYGKQNIT-ISPSAYEALLSYDYPGNVRELKHAIERALLLSKDGVI 379 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + + + + +S L+E EK L+ +LQ+ + + A Sbjct: 380 DIKHLPEEFSPLSSFQKKCFISN--------FSLKECIENFEKNLIIKALQECGWKKTEA 431 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+ LG++ +K + I Sbjct: 432 AKKLGISRKALWEKIKFYGI 451 >UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W352_DYAFD Length = 693 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 121/328 (36%), Positives = 178/328 (54%), Gaps = 18/328 (5%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + + + ++G + +V +S +A + VL++GE GTGKELIA +H+ S+R Sbjct: 373 LNKDFEEIVGGGEAMQQVYRLISLVAESNATVLLLGETGTGKELIAKAVHHTSARKDKLM 432 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I +NCAA+ +L++SELFGHE GAFTGA +R G+FE A+ TLFLDE+ PM Q KL Sbjct: 433 IKVNCAAMPASLIESELFGHERGAFTGAVERRIGKFELANNSTLFLDEVGEMPMETQVKL 492 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E+ERVGG +++NVR++ ATN DL A V G FR+DL RL + LPPLR Sbjct: 493 LRVLQEKEMERVGGKTTIKLNVRIIAATNRDLEAEVKAGRFRSDLYYRLNVFPINLPPLR 552 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R DI +A +F + + I + A L Y WPGN+REL++++ERSV Sbjct: 553 DRREDIESLAGFFLAKFSKSIGKKTVK-LSANALRQLQAYLWPGNVRELEHLIERSVILA 611 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + A TT T+ DL Q E+ + L++ Sbjct: 612 TDPMIREFFLP------------QATGATTDEHTMQSDL--TLEQVERMHIIQVLRRCGG 657 Query: 301 NQK---RAAELLGLTYHQFRALLKKHQI 325 AAE+LG+ + + ++K I Sbjct: 658 KISGIGGAAEILGIPGNTIHSKMRKLGI 685 >UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLY9_LEGLO Length = 468 Score = 472 bits (1217), Expect = e-132, Method: Composition-based stats. Identities = 118/331 (35%), Positives = 174/331 (52%), Gaps = 14/331 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +L+G + S V + +A + VL++GE GTGKE++A +H SSR PFI +NC Sbjct: 136 SLVGNSTSIRTVRRLIEQVADTEASVLVLGESGTGKEVVARNIHAFSSRANKPFIPINCG 195 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ LL+SELFGHE GAFTGA GRFE A+ GTLFLDE+ P+ +Q KLLRV++ Sbjct: 196 AIPGELLESELFGHEKGAFTGAITTRQGRFELANSGTLFLDEIGDMPLPMQVKLLRVLQE 255 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVG ++ + VNVR++ AT+ +L + EG FR DL RL +++PPLRER DI Sbjct: 256 RCFERVGSNKSIDVNVRIIAATHRNLEEAIKEGKFREDLFYRLNVFPIEMPPLRERAEDI 315 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ ++ E P+ A L Y WPGNIREL N+VER + Sbjct: 316 PLIFNELIARIESE-NRPIV-HLMPDAMAALSEYSWPGNIRELANLVERLTILYPKGILN 373 Query: 247 LDDII------------IDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLS 294 +D+ D + +S+ T + +DL+E ++ E L+ + Sbjct: 374 KEDLPQKIRSEYKTYFDSDTPESEREALLRVISQGTVSSSEGIDLKEHLVKTELALISQA 433 Query: 295 LQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 L + + AA L + ++K+ + Sbjct: 434 LNESDWVVSHAANYLNMRRTTLVEKMRKYGL 464 >UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XH6_DESDG Length = 589 Score = 472 bits (1217), Expect = e-132, Method: Composition-based stats. Identities = 128/321 (39%), Positives = 180/321 (56%), Gaps = 4/321 (1%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + +++G ++ V V LA D VL+ GE GTGKEL+A LH+ +R QGPF+ +N Sbjct: 273 RRSMIGRSSVMRGVFRLVESLADTDTTVLVTGESGTGKELVADALHHSGARAQGPFVKVN 332 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C+AL+E LL+SELFGH GAFTGA K GR + A GGTLFLDE+ VQ KLLRV+ Sbjct: 333 CSALSETLLESELFGHVRGAFTGATKDRTGRIQMAHGGTLFLDEIGDISPSVQLKLLRVL 392 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ERVG +P++V+VR+V ATN L A+V G FR DL RL V LP LRER Sbjct: 393 QEKEIERVGEGRPVKVDVRVVAATNKSLRALVARGKFREDLYYRLKVVEVHLPALRERRE 452 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+AE+F + + G A++ L+ Y WPGN+REL++ VE + G + Sbjct: 453 DIPLLAEHFIEEFNEHFHRRV-SGLDSSAQQLLVQYDWPGNVRELRHAVEHAFIMAGGNV 511 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 P + P + A S T Q + K+ L +L++ N+ + Sbjct: 512 IPAAAL---PAELMQSGRFSAQSAGTGALRHDAPDAAAQGAEWKQRLSAALKETGGNKAK 568 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA LLG++ L++ + Sbjct: 569 AARLLGISRQTMYRRLRELGM 589 >UniRef50_C7LP58 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrionales RepID=C7LP58_DESBD Length = 469 Score = 472 bits (1217), Expect = e-132, Method: Composition-based stats. Identities = 125/333 (37%), Positives = 192/333 (57%), Gaps = 11/333 (3%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A + +++G S VL +AP VLI GE GTGKE+ A +H S R PF+ Sbjct: 131 APREVSIVGTHPSVTRVLALARQVAPSKATVLISGESGTGKEMFARFIHAHSGRENAPFV 190 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 ++NCAAL E+LL+SELFGHE G+FTGA R G+FE A GGTL LDE++ + +Q KLL Sbjct: 191 AVNCAALPEHLLESELFGHEKGSFTGAISRKLGKFELASGGTLLLDEISEMALALQAKLL 250 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R ++ GE++RVGG + ++V+VR++ TN +L V +G FR DL RL ++LP L + Sbjct: 251 RALQEGEIDRVGGVETVKVDVRVLATTNRNLEQSVEKGEFRQDLFYRLNVIPLRLPSLAQ 310 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R D++L+A++F ++ RE L + AR+ L+ + WPGN+REL+N++ER+V G Sbjct: 311 RGDDVLLLADFFIRRLTREYGLGSLQ-LSTEARDWLMAHDWPGNVRELQNLMERAVLLAG 369 Query: 242 TSDYPLDDIIIDPFKRRP---------PEDAIAVSETTSLPTLPLDLR-EFQMQQEKELL 291 ++D + P +++ TS T+ D R + E L+ Sbjct: 370 AGPIRSMHFLLDGQEWSPEINEEGEAAAPGVLSMPSATSAVTIDADGRIPTIQEMEMHLI 429 Query: 292 QLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 SL + N+ +A+ELLG++ R L +++ Sbjct: 430 IKSLDKTAGNRTKASELLGISVRTLRNKLGEYR 462 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 472 bits (1217), Expect = e-132, Method: Composition-based stats. Identities = 115/322 (35%), Positives = 174/322 (54%), Gaps = 17/322 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + EV + +AP VLI+GE G GKELIA +H S R + + +NCA Sbjct: 351 EIVGGSPQMQEVFNLMGQVAPSTATVLILGETGVGKELIAGAIHQASDRAERQMVRINCA 410 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ NL++SELFGHE G+FTGA R G+FE AD T+FLDE+ + +Q KLLRV++ Sbjct: 411 AIPANLIESELFGHEKGSFTGATDRRTGKFELADQSTIFLDEIGELSLDLQVKLLRVLQE 470 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ER+GGS + V+VR++ ATN +L V G FR DL RL + LP LR+R +DI Sbjct: 471 KEFERIGGSGTISVDVRVIAATNRNLLDEVEAGRFRMDLYYRLNVFPISLPSLRDRRADI 530 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A +F + + + GF+++ ++ YRWPGNIREL++++ER V + Sbjct: 531 PLLANFFLERYKMKSGKKI-SGFSQKVMSAMMKYRWPGNIRELEHLIERQVILTEGTLIR 589 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK--- 303 D+ I + D +E ++ Q E++ + L+ Sbjct: 590 --DLDIPAAHQVMATDGSGQTEIKTI-----------AQNERDHIFSVLRLCNGKISGKN 636 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AA+LLG+ + +KK + Sbjct: 637 GAAKLLGVPATTLNSKIKKLGL 658 >UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH19_9FIRM Length = 739 Score = 472 bits (1216), Expect = e-132, Method: Composition-based stats. Identities = 111/320 (34%), Positives = 175/320 (54%), Gaps = 11/320 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ V A VL++GE GTGK L A +H+ +R GPFI +NC+ Sbjct: 429 QIIGDSKKVKTAKNFVLKAAQSASTVLLLGESGTGKGLFARAIHFSGNRKDGPFIKVNCS 488 Query: 67 ALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ E LL+SELFG+E G+FTGAQK G+FE A+GGT+FLDE+ P +Q K+LRV++ Sbjct: 489 AIPETLLESELFGYEEGSFTGAQKGGKIGKFELANGGTIFLDEIGDMPFNMQAKMLRVLQ 548 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ER+GG + ++VR++ ATN DL + FR DL RL + +PPLRE SD Sbjct: 549 EREIERIGGHHSIPIDVRVIAATNRDLREEIKANRFREDLYYRLDVLSISIPPLREMASD 608 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I ++ + ++C++ +P +E Y WPGN+REL+N++ER + Sbjct: 609 IPVLTQSLIERICKKHHVP-PKKVSEEVMGVFCRYPWPGNVRELENMLERLLNLVEEDII 667 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 +D + ++ +A L + E++ + +L+ K N+ +A Sbjct: 668 NIDHLPAHLWQHIQSSRYLASGH---------SLDNMTSEVERDAIINALKATKNNRSKA 718 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+LLGL F LK++ + Sbjct: 719 AKLLGLHRSTFYEKLKRYDL 738 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 472 bits (1216), Expect = e-132, Method: Composition-based stats. Identities = 116/331 (35%), Positives = 167/331 (50%), Gaps = 14/331 (4%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 + G + S + +A D VLI GE G GKEL A +H S R + PFI++NC A Sbjct: 211 IKGHSASIQSAIGSAKKVAQTDATVLIYGESGVGKELFAQAIHQASRRHEKPFIAINCGA 270 Query: 68 LNENLLDSELFGHEAGAFTGA-QKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 + L +SELFG++ GAFTGA +K PG+ E A GGTLFLDE+ P+ +Q KLLR ++ Sbjct: 271 IPAALFESELFGYQGGAFTGAEKKGKPGKLELAHGGTLFLDEIGELPLELQVKLLRALQE 330 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 + RVGG++P+ VN R+V ATN L MV +G FR DL RL +++PPLRER D+ Sbjct: 331 RQFYRVGGTEPITVNTRIVAATNRQLEQMVADGRFREDLYYRLNVFSLEIPPLRERREDL 390 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + + F + + P + + L Y WPGNIR+L+NV+ER Sbjct: 391 PELVQIFIHEYSVAHDQSV-PRISPEVMQALFEYTWPGNIRQLRNVIERLSILQENGVIL 449 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQ------------QEKELLQLS 294 + + P + P ++ EKE + + Sbjct: 450 PEHLPSVIRSHTEPTHVSLHTPMGGTYAPPTTTPPPIIRPSIAIAYPSSPANEKERILAA 509 Query: 295 LQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 L++ N+K AAELLG++ +KK I Sbjct: 510 LERTYGNKKAAAELLGVSRGTLYNKMKKFNI 540 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 472 bits (1216), Expect = e-132, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 174/323 (53%), Gaps = 3/323 (0%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + ++G++ +F E+ QV +A + VLI GE GTGKE++A +H LS R + FI+ Sbjct: 137 PGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVARAIHDLSDRKEQAFIA 196 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCA++ LL+SELFGHE GAFTGA R G FE A GT+FLDE+ M +Q KLLR Sbjct: 197 INCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFLDEIGEMDMAMQVKLLR 256 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ + RVG + ++++ R++ ATN +L + E +FR DL RL + +PPLRER Sbjct: 257 VLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLFYRLNVFPINIPPLRER 316 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 +DI +A YF R F + A + + Y WPGN+REL+NV+ER Sbjct: 317 PADIAALAVYFLDSFSRSFGRD-FRDVSPEAEQLMAQYAWPGNVRELRNVIERICIMRSG 375 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + + P A + L L E EK L+Q +LQ+ +N Sbjct: 376 PTLLPEHLPQEIRSTVAPPPLPAELPISIAADLG--LEEAVSAIEKSLIQQALQKTGWNV 433 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 + A L + R ++K+ + Sbjct: 434 LQTAANLKIPRGTLRYKMEKYGL 456 >UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regulator, Fis family n=10 Tax=Desulfovibrionales RepID=Q311G4_DESDG Length = 576 Score = 472 bits (1216), Expect = e-132, Method: Composition-based stats. Identities = 124/319 (38%), Positives = 174/319 (54%), Gaps = 12/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++ + S VL QV+ + P L+ GE GTGKEL+A +H S R P I LNCA Sbjct: 256 NIVAASKSMRLVLNQVAQVGPSRATALLRGESGTGKELLAEAIHQASPRRDMPLIKLNCA 315 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL +L++SELFG++ GAFTGA + G FE A GTLFLDE+ Q K+LR I+ Sbjct: 316 ALPSDLVESELFGYQKGAFTGAVQNKKGLFELAHKGTLFLDEIGELSASAQAKVLRAIQE 375 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++R+G Q + V+VRL+CAT+ L +V G+FR DL R+ V +PPLRER DI Sbjct: 376 QEIQRLGSEQTISVDVRLICATHQHLEELVESGSFREDLYYRINVFPVFIPPLRERREDI 435 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +AE+F + E + + + A + L Y WPGNIRELKN +ER+V Sbjct: 436 LPVAEHFLKEYAEEYQKSI-KRISTPAIDLLTQYHWPGNIRELKNCIERAVLVCDEQVIR 494 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + PP A S T L E + E+ELL +L++ + N +AA Sbjct: 495 TYHM--------PPSLQTAESTATD---SSLSFCEAVAKFEQELLVDALKKARGNMLQAA 543 Query: 307 ELLGLTYHQFRALLKKHQI 325 L ++Y +KK+ I Sbjct: 544 RDLRVSYRIVNYKVKKYGI 562 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 472 bits (1215), Expect = e-132, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 185/321 (57%), Gaps = 19/321 (5%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +D ++ E+ +LE V +A D VL+ GE G GKE+IA +H S R PF+++N Sbjct: 120 QDEIVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIHKHSPRSNQPFVAIN 179 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAA+ E LL++ELFGHE GAFTGA +R PG+FE A+ GT+ LDE++ +Q KLLRVI Sbjct: 180 CAAITETLLEAELFGHEKGAFTGATERKPGKFELANKGTILLDEISEMAYRLQAKLLRVI 239 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E++RVGG++P+ ++VR++ TN DL V +G FR DL R+ +++PPLRER Sbjct: 240 QEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRINVFPIRIPPLRERSD 299 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI+ +AE+F ++ ++ TE ++ LL W GN+REL+N + RS Sbjct: 300 DIIPLAEFFLKRLSNKMSKNFT--ITEDMKKFLLKKSWQGNVRELENFIYRSAVLSQDGI 357 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 L + I+ F+ P A E+EL+ +L++ + N+ + Sbjct: 358 LRLHEDEINLFEEEKPVKAGK-----------------LKDAERELIVDALKKTEGNRTK 400 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA++LG++ R + ++ + Sbjct: 401 AAKILGISVRTLRNKINEYGL 421 >UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TH4_GEOMG Length = 556 Score = 472 bits (1215), Expect = e-132, Method: Composition-based stats. Identities = 127/323 (39%), Positives = 177/323 (54%), Gaps = 20/323 (6%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +++G++ VL ++ +A D VLI+GE GTGKEL+A +H S R P + +NC Sbjct: 242 HHIIGQSLPLKRVLAKIQQIALTDTTVLILGETGTGKELVARAIHAASQRRDRPMVKVNC 301 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+L NL++SELFGHE GAFT AQ R GRFE AD TLFLDE+ P+ Q KLLRV++ Sbjct: 302 ASLPANLIESELFGHEKGAFTSAQVRQIGRFEFADRNTLFLDEIGELPLESQAKLLRVLQ 361 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE ER+G S+ L+V+VR+V ATN DL V +G FR DL RL + +PPLRER D Sbjct: 362 EGEFERLGSSRTLKVDVRIVAATNRDLEEEVRKGRFRQDLWYRLNIFPITVPPLRERTED 421 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ F + R++ + ++L Y WPGN+REL+NV+ER+ Sbjct: 422 IPLLINLFVNKFGRKLGKSI-RRIPAGVMKSLQAYDWPGNVRELENVIERAAINTVGPSL 480 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ--- 302 L D + V+E T+ P L L + E+ + L Sbjct: 481 QLLDNLKSSL----------VTEKTAAPRLTL------EEAERSHILQVLADTNGRIEGP 524 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 K AA +LG+ + RA ++K I Sbjct: 525 KGAALILGINHSTLRARMRKLGI 547 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 118/319 (36%), Positives = 179/319 (56%), Gaps = 5/319 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 L G++ +E++E +S +AP + +LI+GE GTGKEL+A +H S R P + +NCA Sbjct: 139 ELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELVARAIHRQSKRADKPMVEVNCA 198 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E L++SELFGHE GAFTGA ++ G+F+ A GT+FLDE+A + Q K+LR+++ Sbjct: 199 AIPEELIESELFGHEKGAFTGATEKKRGKFDIAHEGTIFLDEVADMSLKAQAKILRILQE 258 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 + ERVGG++ +Q++VR++ ATN DL + EG FR DL RL +++PPLR R+ DI Sbjct: 259 KKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDLFYRLNVIPLKVPPLRSRKEDI 318 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+AE F + P + A L+ + WPGN+RELKN +ER ++ Sbjct: 319 PLLAERFLSDFALKEGEP-GKTIQDDALALLMEHSWPGNVRELKNFIERLAIMTTSNVIT 377 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + DI P E L RE +M EK+ + L++ N + A Sbjct: 378 VHDIPPLPRDGHKVEPF----REPGFELLAGSFREAKMDFEKQYISRKLREFDGNISKTA 433 Query: 307 ELLGLTYHQFRALLKKHQI 325 E +GL +K + + Sbjct: 434 ESIGLERSNLHKKIKAYGL 452 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 122/319 (38%), Positives = 183/319 (57%), Gaps = 12/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++ + + L++LE +AP D VLI GE GTGKEL A +H S R +GPF+++NC Sbjct: 140 NIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFARYIHLNSLRKKGPFLAVNCG 199 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A +E LL +ELFGHE GAFTGA G E A G+LFLDE+ + +Q KLLRVI+ Sbjct: 200 AFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLDEITEMSLTMQAKLLRVIQE 259 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E R+G ++P++V+VR + ATN D+ V G FR DL RL +++PPLRER+ DI Sbjct: 260 REFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYRLNVVNIEIPPLRERKDDI 319 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ YF+ + +K + G +E A L+NY +PGN+REL+N++ER+V +S Sbjct: 320 PLLVAYFSKKYSLLMKKEI-TGVSEEAINLLVNYEYPGNVRELENIIERAVVLCNSSQID 378 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 ++ + D + + + SL + EKE ++ L++ N+ AA Sbjct: 379 VEHLPQDLKELKIEVFTKKEGKFMSL-----------EELEKEYIKWILREVGNNKTVAA 427 Query: 307 ELLGLTYHQFRALLKKHQI 325 ++LG+ LK + I Sbjct: 428 QILGIDRVSLWRKLKNYGI 446 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 122/321 (38%), Positives = 186/321 (57%), Gaps = 11/321 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++ + VL+ + +A +D VLI GE G GKE++A+ +H LS R +GP I +NC Sbjct: 178 DNIVASSPKTKRVLDMAAQVAKVDSTVLITGESGVGKEIVANVIHCLSHRSKGPLIKINC 237 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 A+ ENLL+SELFG+E GAFTGA+K+ PG FE A+ GTLFLDE+ + +Q KLLRV+ Sbjct: 238 GAIPENLLESELFGYEPGAFTGARKQGKPGMFELAEKGTLFLDEVGELSLNLQVKLLRVL 297 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ RVGG +P+ V+VR+V ATN DL MV + FR DL RL +++PPLRER Sbjct: 298 QDHEVLRVGGLKPIPVDVRIVAATNKDLMEMVRKEKFRDDLYYRLNVVSIEIPPLRERRE 357 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+A +F ++ ++ F + L Y WPGNIREL+NV+ER + + + Sbjct: 358 DIPLLALHFLEKINKKYGFN--KRFAPDVIDRLSAYPWPGNIRELENVIERVMVMTKSDE 415 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + + ++ I SE + L++ EK L++ +L++ + + Sbjct: 416 IRTIHLPGNIKNLSSLQNDIMFSEI-------MPLKKAVEHVEKHLIEQALKKYGSTR-K 467 Query: 305 AAELLGLTYHQFRALLKKHQI 325 A L + +KK+++ Sbjct: 468 VARALKVNQSTIVRKIKKYKL 488 >UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4T0_9DELT Length = 461 Score = 471 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 120/321 (37%), Positives = 184/321 (57%), Gaps = 12/321 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + ++G+ + +V + +A D PVL+ GE GTGKEL+A +H S R Q P +S+N Sbjct: 145 RHGIVGDCPAMRDVYAMIDKVAASDAPVLVHGESGTGKELVAMAIHQASPRRQQPLVSIN 204 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A+ ENLL+SE FGHE GAFTGA G+ E A+ GTLFLDE+ P+ +Q KLLR + Sbjct: 205 CGAIPENLLESEFFGHERGAFTGATNTVKGKVEYAENGTLFLDEIGELPVNLQVKLLRFL 264 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + +RVGG + L+VNVR++ ATN ++ + G FR DL R+ + LPPLR+R Sbjct: 265 QDMRFQRVGGRKTLEVNVRVLAATNVNIQEAMRLGQFREDLYYRIGVVGIHLPPLRDRGE 324 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D++L+A +F +++ + GF+ A E + NY WPGN+REL+N V R++ S Sbjct: 325 DVVLLANHFLEIHGKQLPKKI-QGFSPEAMEAIRNYPWPGNVRELENKVRRAIILVEGSR 383 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + + P LRE + Q E++++ +L++ + N + Sbjct: 384 ITPQSLGLAGEASSPGPARAET-----------TLREARTQLERQMMLQALRRFEGNIVK 432 Query: 305 AAELLGLTYHQFRALLKKHQI 325 A+E LG++ F LL+KH+I Sbjct: 433 ASEALGVSRPTFYDLLRKHEI 453 >UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02BY0_SOLUE Length = 447 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 127/325 (39%), Positives = 187/325 (57%), Gaps = 7/325 (2%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKP-VLIIGERGTGKELIASRLHYLSSRWQGPF 60 A K ++ E+ EV+ V ++ + +L+ GE GTGK+L+A LHY S R PF Sbjct: 128 APQKREVIAESGPMREVMNFVRRVSASEATTILLEGENGTGKDLVAKTLHYQSVRQAEPF 187 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I++NCAA+ E LL+SELFG+E GAFT A+ + G FE AD GTLFLDE+ P+M+Q KL Sbjct: 188 IAINCAAIPETLLESELFGYEKGAFTDARAQKRGIFELADKGTLFLDEIGEIPLMLQAKL 247 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV+E R+GG + + +++R++ ATN +L V EG FR DL RL + +PPLR Sbjct: 248 LRVLEEQTFRRLGGLKDIHLDLRVIAATNKNLREAVKEGAFRQDLYFRLNVIQILIPPLR 307 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI+ M ++F R+ K + G T+ A + L+ + WPGN+REL+N +ERS+ Sbjct: 308 ERPEDIVPMTKFFIEHYNRKFKRQI-EGVTDSAAKLLMAHDWPGNVRELRNAIERSMILE 366 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + + I R + + LPT L L + E+ LL +L++ + Sbjct: 367 EGAYITAASLPIS-ISRPENGLPLGNAAGMELPTDGLSLED----NERSLLVRALEKTEG 421 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 NQ +AA LL +T R +KK + Sbjct: 422 NQTQAARLLRITRDTLRYKMKKFNL 446 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 470 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 119/322 (36%), Positives = 178/322 (55%), Gaps = 12/322 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 ++ ++G S + + E + +AP + VLI GE GTGKEL+A LH S R G FI +N Sbjct: 261 ENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKELVAHALHVESGR-PGSFIKVN 319 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 CAA+ ENL ++ELFG+ GAFTGA+K G+FE A+ GT+FLDE+ P+ +Q KLLRV Sbjct: 320 CAAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKLLRV 379 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E+ER+G + ++NVR++ ATN +L ++ + FR DL RL + +P LRER Sbjct: 380 LQEKEVERLGDRKTRKINVRVIAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERI 439 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 D+ L+ +YF + +E + G + + +NY WPGNIREL+NV+ER Sbjct: 440 EDLPLLIKYFIEKFNKEYGTNV-TGISPEVMDIFMNYSWPGNIRELENVLERCFNLVEGK 498 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 K+ P + L L EKEL++ +L + K N+ Sbjct: 499 VIE---------KKYLPPYILGEELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKS 549 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA LLG++ LK + Sbjct: 550 KAANLLGISRQWLHKRLKYFNL 571 >UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSN4_9DELT Length = 519 Score = 470 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 124/318 (38%), Positives = 181/318 (56%), Gaps = 12/318 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G+++S L+V + + +AP VL++GE GTGK LIA +H LS R + PFI +NCA+ Sbjct: 199 IVGKSSSMLQVRQMMEKVAPTRATVLLLGESGTGKTLIAGIIHELSERGKFPFIKVNCAS 258 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L ENLL+SELFG+E GAFTGA++ PGRFE A GT+FLDE+ P +Q KLLR ++ Sbjct: 259 LPENLLESELFGYEKGAFTGAERSKPGRFEEAHRGTIFLDEIGEMPAGLQAKLLRFLQER 318 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ER+GG + +V+VR++ ATN +L V EG FR DL RL + +P LRER DI Sbjct: 319 EFERLGGVKTHRVDVRVIAATNKELDKEVQEGRFREDLYYRLNVFPIWVPSLRERREDIP 378 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + +F +M RE L + + + L+ Y WPGNIRE++N++E+ L Sbjct: 379 SLINHFLDKMAREYGRRLV--LSNSSLDYLVEYEWPGNIREMENLMEKLSIMSEGQIVAL 436 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 D+ D + + + + EK+ + +LQ+ + Q RAA Sbjct: 437 KDLPSDMQQEKVCPGKVQEQARDH----------SLLDMEKKEILSALQRNSWIQSRAAR 486 Query: 308 LLGLTYHQFRALLKKHQI 325 LGLT Q +KK + Sbjct: 487 ELGLTQRQMGYRIKKFNL 504 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 470 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 119/321 (37%), Positives = 183/321 (57%), Gaps = 10/321 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 ++ + ++E V+ +AP + +LI GE G GKE++A +H +S R +GPFI +N Sbjct: 260 NSEIIYRSKQMERLIELVNKVAPTESTILIYGETGVGKEVLAKYIHNIS-RSEGPFIKIN 318 Query: 65 CAALNENLLDSELFGHEAGAFTGAQ-KRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 C A+ ENLL++ELFG+E GAFTGA+ + PG E AD GTL LDE++ P+ +Q KLLRV Sbjct: 319 CGAIPENLLEAELFGYEKGAFTGAKSEGKPGLIEVADKGTLLLDEISELPLSLQVKLLRV 378 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E RVGG +P++V+VR++ A+N DL +V EG FR DL RL V +PPLRER Sbjct: 379 LQEKEFIRVGGIKPIKVDVRIIAASNKDLKELVKEGKFRQDLYYRLNVVPVTIPPLRERV 438 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI ++A +F + T E + Y WPGN+REL+NV+ER V Sbjct: 439 QDIPILAYHFLNMYNEKYGHS--KQLTNEVMEIFMKYPWPGNVRELENVIERIVIISEND 496 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 D+ + + + V + +P L+E E +L++ ++++ + Sbjct: 497 QITKKDLPGELLNQEETNHSFGVHVSRLMP-----LKEASALVEYQLIKQAIEEC-GSSY 550 Query: 304 RAAELLGLTYHQFRALLKKHQ 324 +AAE+LG+ LKK++ Sbjct: 551 KAAEVLGVDQSTIIRKLKKYE 571 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 470 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 119/333 (35%), Positives = 185/333 (55%), Gaps = 10/333 (3%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A D ++G + + ++ + + AP D VLI GE GTGKEL+A ++ S R PF+ Sbjct: 140 AVAADAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGKELVARAVYQHSLRADKPFL 199 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NC A+ E LL+SELFG+E GAFTGA R G+ E+A+ GT+FLDE+ P+ +Q K+L Sbjct: 200 VINCVAIPETLLESELFGYEKGAFTGATGRKVGKIEQANRGTVFLDEIGDMPLSIQAKIL 259 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R+++ +ER+GG Q + V+VR++ ATN DL A V G FR DL RL + +PPLRE Sbjct: 260 RLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQFREDLYYRLKVVTMAMPPLRE 319 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI L+ YF + RE+ P PG ++ A L WPGN+REL N V++++ + Sbjct: 320 RPGDIPLLVRYFLARYSREMGQP-DPGVSDEAMALLTTQPWPGNVRELGNTVKKALIFNL 378 Query: 242 TSDYPLDDIII---DPFKRRPPEDAIAVSETTSLPTLPLD------LREFQMQQEKELLQ 292 + D++ +P + P +A L + + +++ Sbjct: 379 GAPLGPDEVQKASGEPLRGGGPAEADPGDSLARYVRRELASGRESLFEDLMDRFGLLVIR 438 Query: 293 LSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +L+ N+ +AA LLGL+ A ++K+ + Sbjct: 439 EALEATGGNRSQAARLLGLSRPTLLAKIEKYGL 471 >UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022Z3_SOLUE Length = 705 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 116/319 (36%), Positives = 172/319 (53%), Gaps = 19/319 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + + VL Q+ +AP + VLI+GE GTGKEL+A +H +S R PF++LNCA Sbjct: 401 EIVGRSAAMNRVLGQIELVAPTNATVLILGETGTGKELVARAVHQMSPRRDRPFVTLNCA 460 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ LL+SELFG+E GAFTGA + GRFE A+ GTLFLDE+ P+ +Q KLLR ++ Sbjct: 461 AIPTGLLESELFGYERGAFTGALSQKIGRFEMANRGTLFLDEVGDIPLDLQPKLLRALQE 520 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ER+GG++ + ++VRLV ATN +L M+ + FR+DL RL + PLR+ DI Sbjct: 521 KSFERLGGTKTIPIDVRLVAATNRNLTQMMGDKLFRSDLYYRLKVFPITTSPLRDHPEDI 580 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 ++A +F + RE+ + A + L+ + WPGN+REL+N +ER+V S Sbjct: 581 PILARHFMQKYAREMGKQIDT-IPPDALQALVKWPWPGNVRELENFIERAVILTQGSSLR 639 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 I P P D+ E+ L L + + +AA Sbjct: 640 APLAEIRPDAAELPGDS------------------TLEFVERAHLLKILGETGWVISKAA 681 Query: 307 ELLGLTYHQFRALLKKHQI 325 LG+ A++ K I Sbjct: 682 ARLGMPRTTLNAMMGKLGI 700 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 115/323 (35%), Positives = 175/323 (54%), Gaps = 17/323 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++G++++ +V + + +A D VLI+GE GTGKEL+A +H LS R I +NC Sbjct: 236 SEMVGQSSAIRQVFDLIEQVAASDSTVLILGETGTGKELVARSIHNLSPRKDKLMIKVNC 295 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL NL++SELFGHE G+FTGA +R G+FE A GTLFLDE+ +Q KLLR ++ Sbjct: 296 AALPANLVESELFGHEKGSFTGASERRIGKFELAHNGTLFLDEIGELSPDIQVKLLRALQ 355 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ER+GG ++ NVR++ ATN +L V EG FR+DL RL + +PPLR R+ D Sbjct: 356 EKEIERIGGKGVIKTNVRIIAATNRNLMKEVEEGNFRSDLYYRLNVFPITIPPLRNRKED 415 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I ++ +F + ++ + G T+ +TL Y WPGNIREL++++ERS+ + Sbjct: 416 IQALSAHFIQHLAKKTGRQV-KGMTKGVLKTLQEYPWPGNIRELEHLIERSILLSRGNII 474 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK-- 303 + V L + + + E++ + L+ K Sbjct: 475 NEVHLP-------------KVEHMEDLTSNKEIRIKTIFENERDHILNILKLCKGKISGN 521 Query: 304 -RAAELLGLTYHQFRALLKKHQI 325 AAELL + + +KK I Sbjct: 522 GGAAELLSIPATTLNSKIKKFNI 544 >UniRef50_C6HWP3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWP3_9BACT Length = 375 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 133/364 (36%), Positives = 184/364 (50%), Gaps = 40/364 (10%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + E+ +G++ E+L V+ +A D VLI GE GTGKE IA LH S R PF Sbjct: 12 IEEFSGRFVGQSKRVRELLTLVARVAKSDSTVLITGESGTGKERIARILHEASPRAHAPF 71 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + +NC A+ E L++SELFGHE GAFTGA PGRFE A+GGT+F DE+ P+ +Q KL Sbjct: 72 VPVNCGAIPEGLMESELFGHEKGAFTGAVTGRPGRFELANGGTIFFDEIGELPLPLQVKL 131 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ ERVGG + NVR++ AT+ +L M EG FR DL RL+ V++PPLR Sbjct: 132 LRVLQEKTYERVGGVRVQTANVRVLAATHRNLEEMSREGRFREDLFYRLSVIPVEIPPLR 191 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI L+ +F + E ++ L +Y WPGN+REL+NV+ER + Sbjct: 192 ERREDIPLLMTFFQRRW-EEEGRGDPVELGMDVQKALCDYPWPGNVRELENVMERLHVLY 250 Query: 241 GTSDYPLDDII--IDPFKRRPPEDAIAVSETTSLPTLP---------------------- 276 G +D + I PE + ET+S P P Sbjct: 251 GGETVTVDLLPEKIRQHLSSIPEPLPSPMETSSDPLPPQSDSSPDAELPVLLDGASASLL 310 Query: 277 ---------------LDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLK 321 L F E+ L+Q +L++ N+ +AAELLG+ LK Sbjct: 311 PDPARLAGSIDAESDFSLTAFMGDIERTLVQKALERAGGNRSKAAELLGINRTTLIEKLK 370 Query: 322 KHQI 325 + I Sbjct: 371 RFGI 374 >UniRef50_Q46PB6 Helix-turn-helix, Fis-type n=7 Tax=Burkholderiaceae RepID=Q46PB6_RALEJ Length = 592 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 130/329 (39%), Positives = 184/329 (55%), Gaps = 11/329 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + F V V+ +AP D VL +GE G GKE+ A+ LH LS R GP++++NCA Sbjct: 260 GVVGISAGFNTVCHMVNKVAPTDATVLFLGESGVGKEVFANNLHRLSKRADGPYVAVNCA 319 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ++ E+L++SELFG E G FTGA GRFERADGGTLFLDE+ T Q KLLR ++ Sbjct: 320 SIPEHLMESELFGVERGGFTGATTSRAGRFERADGGTLFLDEVGTLSFTAQGKLLRALQQ 379 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE+ERVG ++ +VNVR+V ATN +L V G FR DL RL +Q+PPLRER DI Sbjct: 380 GEIERVGDTRTRKVNVRVVAATNVNLREAVKAGHFREDLFFRLNVFPIQVPPLRERRDDI 439 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS--- 243 LM +F +M R+ + GF ERA + + Y WPGN+REL+N++ER+V Sbjct: 440 PLMMNWFLQRMARKHDKHI-TGFRERAVDAMFAYDWPGNVRELENMIERAVILAEDGGAL 498 Query: 244 -------DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQ 296 D KR ++ + P + R + E +L+ ++ Sbjct: 499 DLCHLFTSGEEVDTTAFMLKRSGSIGRVSEASEAESPPSAAEGRPGLAETEVAMLRAAVA 558 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + N RAA +LG++ L+K+ I Sbjct: 559 EANGNLSRAARVLGISRPTLAYRLQKYGI 587 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 129/326 (39%), Positives = 181/326 (55%), Gaps = 7/326 (2%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 + + ++GE+ + V AP D VL+ GE G+GKEL A +H R PFI + Sbjct: 203 FFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPFIKV 262 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 +CAAL L+++ELFGHE GAFTGA R PG+FE A GGT+F+DE+ P+ VQ KLLRV Sbjct: 263 DCAALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKLLRV 322 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 I+ E ERVGG+Q ++V+VR+V AT+ DL MV EG FR DL R+ V LPPLRER Sbjct: 323 IQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLRERG 382 Query: 184 -SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI +A +F + R +L P + A E L YRWPGN+REL+N +E +V Sbjct: 383 AEDIERLARHFVAAVARRHRL-TPPRLSAAAVERLKRYRWPGNVRELENCIESAVVLCEG 441 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLRE---FQMQQEKELLQLSLQQGK 299 ++ + P R A ++ + PT P L + E+ + L K Sbjct: 442 EIL--EEHLPLPDVDRAALPPPAAAQGVNAPTAPAPLDAGLLPLAEVERRHILRVLDAVK 499 Query: 300 YNQKRAAELLGLTYHQFRALLKKHQI 325 N+ AA +L + + LK++ + Sbjct: 500 GNRTAAARVLAIGRNTLARKLKEYGL 525 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 116/320 (36%), Positives = 174/320 (54%), Gaps = 15/320 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++++G + + EVL++V +AP D VL+ GE GTGKEL+A LH S R PF+ +NC Sbjct: 167 EHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKELVARALHVTSRRSDKPFVPVNC 226 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ + LL+SELFGH GAFTGA + G FE A+GGTLF+DE+ Q KLLR ++ Sbjct: 227 AAITDTLLESELFGHARGAFTGATRARRGMFEEANGGTLFIDEIGETSPGFQAKLLRALQ 286 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE+ RVG S P+QVNVR++ ATN DL + E FR DL RL +++PPLRER D Sbjct: 287 EGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFREDLFYRLNVVPLRIPPLRERRED 346 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + L+A +F + + T A +L+ + WPGN+REL+N++E++ + Sbjct: 347 VPLLAAHFLQRFVQRTGSERV--LTPEAVASLVAHDWPGNVRELENIIEQAAALCTGREI 404 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D+ I+ + L + E+ + +L + + R Sbjct: 405 RAADVQIEARAAPAGGAGV-------------TLADAVEDTERRAITAALARCGNDLGRV 451 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LG++ +K+ I Sbjct: 452 ARDLGISGTTLWRKMKRLGI 471 >UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZV27_DESOH Length = 510 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 124/323 (38%), Positives = 183/323 (56%), Gaps = 22/323 (6%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++++G+++ VL ++ +A D VL++GE GTGKEL+A +H LS R + +NC Sbjct: 200 EHIIGQSDGLKYVLYKIEQIADSDTTVLVLGETGTGKELVARAIHNLSRRKNRTMLKVNC 259 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL NL++SELFGHE GAFTGA RH GRFE A+G TLFLDE+ P+ +Q KLLRV++ Sbjct: 260 AALPTNLIESELFGHEKGAFTGAHARHTGRFEVANGTTLFLDEIGELPLELQPKLLRVLQ 319 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE ER+G S +V+ R++ ATN +L V G FR DL RL + +PPLR+R D Sbjct: 320 DGEFERLGSSHSTKVDARIIAATNRNLEEEVRNGNFREDLWYRLNVFPITMPPLRDRLDD 379 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ E++ ++ R + + + ETL Y WPGN+REL+NV+ER+V + Sbjct: 380 IPLLVEFYVKKISRRMGKTI-ETIPSKIMETLQAYPWPGNVRELENVLERAVINSSGTKL 438 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY---NQ 302 L D + PF+ + E++ + L+Q ++ + Sbjct: 439 RLVDELKRPFRGLS------------------SSEKTLAAVERDHIVRVLEQTQWKVGGK 480 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AAE+LGL RA ++K I Sbjct: 481 NSAAEILGLDRSTLRARMRKLNI 503 >UniRef50_C4XJ05 Fis family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XJ05_DESMR Length = 447 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 130/319 (40%), Positives = 177/319 (55%), Gaps = 15/319 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++GE+ + V Q+ +A D VL++GE G GKEL A LH S R +GPF+++NCA Sbjct: 134 NMVGESRAMRAVFSQLLKVAATDATVLLLGESGVGKELAALSLHEKSGRAKGPFVAVNCA 193 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E LL+SELFGHE GAFTGA R G+FE+A GTLFLDE+ P Q K+LR IE Sbjct: 194 AIPEGLLESELFGHERGAFTGAVARKIGKFEKAAQGTLFLDEIGDMPPETQAKILRAIES 253 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 + ERVGG +PL+++VR+V AT+ DLP M+ +G FR DL RL V+LPPLR+R DI Sbjct: 254 RQFERVGGGKPLRLDVRVVAATHRDLPEMIRQGRFREDLYHRLNVFPVRLPPLRDRREDI 313 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A F + A + LL + WPGN+RELKNV+ER+ G + Sbjct: 314 PLLAGRFLE------GFRPGARLSVEALQRLLAHDWPGNVRELKNVLERATVLAGGDEIA 367 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + P + + DL E+ L++ +L + Q RAA Sbjct: 368 PRHL---------PGLSGQGPAEATAGDEAADLDSRLAAYERTLIEAALSRTGGVQSRAA 418 Query: 307 ELLGLTYHQFRALLKKHQI 325 LLG+ +KK I Sbjct: 419 ALLGIKERSLWHRVKKLGI 437 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 469 bits (1209), Expect = e-131, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 168/320 (52%), Gaps = 14/320 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++G + V + A D PV I GE GTGKEL+A +H L R P++ NC Sbjct: 163 HGMVGHSAQMRRVFHLIEKAAQSDAPVFIYGESGTGKELVARAIHDLGPRSDQPYVQFNC 222 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AALNE LL+SELFGH GAFTGA + GRFE A GG +FLDE+ PM VQ KLLRV+E Sbjct: 223 AALNEALLESELFGHVKGAFTGAFRHRQGRFEAAHGGDIFLDEIGDLPMPVQVKLLRVLE 282 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ERVG ++ L V+VR++ ATN LP ++++G FR DL R+ V LP LRER+ D Sbjct: 283 TKTFERVGDNRQLSVDVRIITATNKVLPELISQGQFREDLFYRINVIPVHLPSLRERKED 342 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A+YF ++ + + G + + ++Y WPGN+RELK+ +E + Sbjct: 343 IPLLADYFIQRLRMKSDKDI-KGLSPQTLRLFMDYSWPGNVRELKSSLEYAFVLADHGHI 401 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + + + PP +++ L +L Q N+ A Sbjct: 402 EPEHLPHNVVVTAPPVAEPRYGNPG-------------HDSQRQQLVQALHQAGGNKSEA 448 Query: 306 AELLGLTYHQFRALLKKHQI 325 A +LG+ ++KH I Sbjct: 449 ARILGINRVTVLNRMRKHGI 468 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 469 bits (1209), Expect = e-131, Method: Composition-based stats. Identities = 117/322 (36%), Positives = 177/322 (54%), Gaps = 5/322 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKP-VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + E+ + +A VLI GE GTGKEL+A +H LS+R G F+ +NCA Sbjct: 147 IIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTGKELVARAVHRLSARKSGRFVDINCA 206 Query: 67 ALNENLLDSELFGHEAGAFTGA-QKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AL E+LL++ELFG+E GAFTGA PG FE AD GT+FLDE+ +++Q KLLR+++ Sbjct: 207 ALTESLLEAELFGYEKGAFTGAATAGKPGLFEIADKGTVFLDEIGEMGVLLQAKLLRILQ 266 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + +RVGG Q ++++VR++ +TN +L + G FR DL RL + +PPLRER D Sbjct: 267 ERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASGNFRKDLYYRLKVLPIYVPPLRERRED 326 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 IML+ +YF + E + LL Y WPGNIRELKNVVER V S Sbjct: 327 IMLLVKYFIHKYNNEFGKNIC-DIPPDTERILLEYGWPGNIRELKNVVERGVLIANGSAL 385 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREF--QMQQEKELLQLSLQQGKYNQK 303 + ++ E ++ + + D + EK+ ++ L++ + + Sbjct: 386 SPKYVANISVGKKESESLAGITVDGNTDCVSSDGLDARSLAFMEKQHIENVLKETSWRRT 445 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AA +LG+ +K++ I Sbjct: 446 EAARVLGINRTTLYNKIKEYGI 467 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 469 bits (1209), Expect = e-131, Method: Composition-based stats. Identities = 124/332 (37%), Positives = 194/332 (58%), Gaps = 13/332 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKP-VLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +++G + E++ V+ +A + +L+ GE GTGK+L+A +HY S R + PF+++N Sbjct: 142 HDIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGKDLVAKAIHYQSRRQEKPFVAIN 201 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C+A+ E L+++ELFGHE GAFT A+ G FE ADGGTLFLDE+ ++Q KLLRV+ Sbjct: 202 CSAIPETLMEAELFGHEKGAFTDAKAMKKGLFEAADGGTLFLDEIGELSPLLQAKLLRVL 261 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 E + RVGG + +QV+VR++ A+N DL MV +GTFR DL RLA V LPPLR+R+ Sbjct: 262 EDQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDGTFRQDLYYRLAIISVFLPPLRDRKE 321 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI+ + E+F + R+ K + G T+ R L+ + WPGN+RELKN +ER++ + Sbjct: 322 DILPLVEFFIERYNRKFKKSI-RGVTDNTRRLLMKHDWPGNVRELKNAIERAMILDEAEN 380 Query: 245 YPLDDIIIDPFKRR----------PPEDAIAVSETTSLPTLPLDLREF-QMQQEKELLQL 293 D + +++ PP + SLP L + + E+ +++ Sbjct: 381 LRPDYLPFAVAQQQAMYTAFESASPPAPIQQLPNGRSLPRLVIPEGGTSLEEVERAFVEM 440 Query: 294 SLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 ++++ NQ AA LL ++ R LKK + Sbjct: 441 AMKEANGNQTHAARLLDISRDALRYKLKKFGL 472 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 469 bits (1208), Expect = e-131, Method: Composition-based stats. Identities = 124/321 (38%), Positives = 180/321 (56%), Gaps = 3/321 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +++LGE+ E + A VLI GE G GKE A +H GPFIS+NC Sbjct: 299 EDILGESQPISETKKMARKAARSKASVLITGESGVGKEQFARAIHGAGVTNNGPFISVNC 358 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ +NLL+SELFG+ GAFTGA+K G+FE A+ GTLFLDE+ ++ Q K+LRV+ Sbjct: 359 AAIPDNLLESELFGYAEGAFTGAKKNGKAGKFELANHGTLFLDEIGDMSLLTQVKILRVL 418 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ER+GG+ P+ V+ RL+ ATN DL MV EGTFR DL RL +Q+PPLR R+ Sbjct: 419 QEREIERIGGTHPIPVDFRLIAATNKDLKQMVREGTFREDLYHRLHVIPIQIPPLRFRKQ 478 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+ E ++C+ + + +Y WPGN+REL NV+ER Sbjct: 479 DIPLIVEEHLQKLCQMYNAEE-KTLDKEVLRLMFHYNWPGNVRELINVLERLFALSDDVH 537 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 D+ + F R E V SLP ++ + ++E+ L++ L++ K N+ + Sbjct: 538 IRAKDLP-EEFYYRDMEQKKLVPMIQSLPAKQEAMKVVRDEEERGLIERVLKEAKGNKSK 596 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA LLG++ L + +I Sbjct: 597 AAALLGISRATLYNKLSRFKI 617 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 469 bits (1208), Expect = e-131, Method: Composition-based stats. Identities = 122/322 (37%), Positives = 175/322 (54%), Gaps = 18/322 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G + + +S +AP + VL++GE GTGKE+ A +H S R I +NCA Sbjct: 220 DIVGTSAEMQRRITILSRVAPSESTVLLLGETGTGKEVFARAIHAGSPRRDNLMIKVNCA 279 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL +L++SELFGHE G+FTGA +R G+FE AD TLFLDE+ P+ Q KLLRV++ Sbjct: 280 ALPPHLIESELFGHEKGSFTGATQRRIGKFELADHSTLFLDEIGELPLEFQSKLLRVLQE 339 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ER+GG ++VNVR+V ATN +L V G FR+DL RL + +PPLRER+ DI Sbjct: 340 KEIERIGGKGSIKVNVRIVAATNRNLEEEVRAGRFRSDLYYRLHVFPIAIPPLRERKEDI 399 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +A +F + P + +A E L++Y WPGN+REL++++ER++ T Sbjct: 400 PALANHFLQRFAA-NSRREAPSISAKAMEGLMHYEWPGNVRELEHLMERTLLLTTTPVIA 458 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK--- 303 D+ P A + S LPLDL EKE + L+ Sbjct: 459 KIDL--------PGVPVTASKDPDSTFILPLDL------MEKEYILKVLKLCNGRIAGPN 504 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AA L L + +KK I Sbjct: 505 GAAAKLKLPSTTLNSRMKKLGI 526 >UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KL56_AERHH Length = 709 Score = 469 bits (1208), Expect = e-131, Method: Composition-based stats. Identities = 128/328 (39%), Positives = 185/328 (56%), Gaps = 11/328 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++ ++ +VLE+V +A D VLI+GE GTGKELIA +H LS+R + +NCA Sbjct: 375 NIIYQSAVMEKVLEKVKLVAQSDCTVLILGETGTGKELIAQAIHALSARHDHEMVKVNCA 434 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ L++S+LFGHE GAFTGA + GRFERA GTLFLDE+ P+ +Q KLLRV++ Sbjct: 435 AIPTGLIESDLFGHEKGAFTGALTQRIGRFERAHKGTLFLDEVGDMPLDLQPKLLRVLQE 494 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ELERVG S P+ ++VRLV ATN DL +MV FR+DL RL ++LPPLRER DI Sbjct: 495 HELERVGNSNPIAIDVRLVAATNCDLLSMVKNKRFRSDLYYRLNVFPIELPPLRERREDI 554 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F ++ + ++ + A + L++ W GNIREL+N++ER+V Sbjct: 555 PLLVNFFIKKIAKRMRRTI-TSIPADAMKMLVSLPWYGNIRELENIIERAVVMTRGHVLN 613 Query: 247 LDDIIIDPFKRRPPEDAIAVSETT------SLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 L + P K + + E LP LP E Q + E+ + +L+ Sbjct: 614 LSPDELLPLKGFHKIETLVYDEPARELFREPLPALP-QGDEAQGEDERVSIIRALKACNG 672 Query: 301 NQK---RAAELLGLTYHQFRALLKKHQI 325 AA+ LG+ + +K+ I Sbjct: 673 IVAGERGAAQRLGMKRTTLLSKMKRLGI 700 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 469 bits (1208), Expect = e-131, Method: Composition-based stats. Identities = 128/313 (40%), Positives = 187/313 (59%), Gaps = 12/313 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 NL+G++ SF VL+ V +A D VL+ GE GTGKELIA +H+ S R +GPF+++NCA Sbjct: 192 NLVGQSPSFQAVLKTVMKVASTDATVLLFGESGTGKELIAKTIHFQSKRAKGPFVAINCA 251 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENLL++ELFG E GAFTGA K G+FE+A+GGT+FLDE+A P+ +Q KLLRV++ Sbjct: 252 AIPENLLEAELFGSEKGAFTGAVK-RIGKFEQANGGTIFLDEIAELPLSLQPKLLRVLQE 310 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 +E +G S+ ++V+VRL+ ATN DL + +G FR DL RL + +PPLRER+ DI Sbjct: 311 RTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFREDLFWRLNVIPIYIPPLRERKEDI 370 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ EY+ C + + E A + L++Y WPGN+REL N +ER V +S Sbjct: 371 PLLVEYYLKSFCNIYRKSV--SIDEEALKVLVSYDWPGNVRELANTIERLVVMTESSKIK 428 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + D+ P+ V + L L + E+ + +L + +N ++ A Sbjct: 429 VYDL---------PDTVRGVFKLKPYSLGDLKLPTEVEELERIRIMDTLPKFNFNIRKTA 479 Query: 307 ELLGLTYHQFRAL 319 + LGLT Q Sbjct: 480 QALGLTERQLNYR 492 >UniRef50_A6G018 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G018_9DELT Length = 628 Score = 469 bits (1208), Expect = e-131, Method: Composition-based stats. Identities = 129/314 (41%), Positives = 180/314 (57%), Gaps = 6/314 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + ++ + +A + VL+ GE GTGKEL A +H S R + PF+++NCAA Sbjct: 317 VVGSSPQMKKLHVFLERVAATNATVLVNGESGTGKELAARMIHARSPRAERPFVAINCAA 376 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + ENLL+SE FGHE GAFTGA RH G FERA GTLFLDE+A Q ++LRV+E Sbjct: 377 VPENLLESEFFGHEKGAFTGAVARHQGVFERAHTGTLFLDEIAEMAPATQARMLRVLENR 436 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 RVGG++ ++V+VRLV AT+ DL +V +G FR DLL RL+ +LPPLRER DI Sbjct: 437 SFTRVGGTEEVKVDVRLVAATHRDLRKLVADGQFREDLLYRLSVIHTKLPPLRERRGDIP 496 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + +F + ++ + + A L+NYRWPGN+REL+NVVER++ L Sbjct: 497 ELVRHFCSVLGDDMGRHV-ETVADDALAVLVNYRWPGNVRELRNVVERALVLGDGPVLEL 555 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 DD+ + P D S S P L L E E++ + +L+ N+ RAA Sbjct: 556 DDLPPELQHAGPHPDQPGASPVVS-PQKVLPLAEL----EQQAIAAALEATGGNKARAAA 610 Query: 308 LLGLTYHQFRALLK 321 LLG+ LK Sbjct: 611 LLGIDRTTLYRKLK 624 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 468 bits (1207), Expect = e-131, Method: Composition-based stats. Identities = 114/325 (35%), Positives = 182/325 (56%), Gaps = 10/325 (3%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + E + ++G++ ++ +++ ++ + +LI GE GTGKEL+A +H S R PF Sbjct: 125 VEEEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRRSKRANQPF 184 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I +NC+A+ L ++ELFGHE G+FTGA R G+ E A GTLFLDE+ P+ +Q KL Sbjct: 185 IPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIGEMPLFMQAKL 244 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E RVGG + +++ R++ ATN +L MV FR DL R+ +++PPLR Sbjct: 245 LRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVIHLKIPPLR 304 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DI L+ + F + +I A E L+NY WPGN+R+L+N++ER+V Sbjct: 305 ERKEDIPLLVKKFIDKFS-KINNKNVYDIDNDALEILMNYDWPGNVRQLENIIERAVVLC 363 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + + R ++ +SE L+L + EK ++ LQ+ + Sbjct: 364 QGEIITANHLP-----DRIKSNSQKISENIRSENNSLNLYDI----EKNIILKVLQEENF 414 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 NQ RAA+ LG++ Q R +K + Sbjct: 415 NQTRAAQKLGISRKQLRTKMKNFGL 439 >UniRef50_A0L6X2 Transcriptional regulator, NifA, Fis Family n=6 Tax=Proteobacteria RepID=A0L6X2_MAGSM Length = 550 Score = 468 bits (1207), Expect = e-131, Method: Composition-based stats. Identities = 136/322 (42%), Positives = 189/322 (58%), Gaps = 7/322 (2%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 LLG+A S +V+ A D VL++GE GTGKEL+A+ +HY S+R PF+ +NCA+ Sbjct: 227 LLGKAASMKQVVNMALKAAQFDSTVLVLGESGTGKELVANTVHYNSARASRPFVKVNCAS 286 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L++NLL+SELFGHE GAFTGA GRFE ADGGTLFLDE+ Q KLLRV++ G Sbjct: 287 LSDNLLESELFGHEKGAFTGAIATRKGRFEMADGGTLFLDEIGEISPSFQAKLLRVLQEG 346 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG++ ++VNVR+V ATN DL A V +G FRADL RL +++P LRER D+ Sbjct: 347 EFERVGGARTIKVNVRVVAATNRDLSAEVQKGNFRADLFYRLHVLPIEIPALRERMEDLP 406 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+ E ++ + PL T+ A L+ Y W GN+REL+N +ER+ Sbjct: 407 LLTEALLERISTKQHRPL--SITKEALRRLMMYEWAGNVRELENCLERAAVLSDEGHIDA 464 Query: 248 DDIIIDPFKRRPPEDAIAV----SETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 II R P A+ + ++ DL + ++ E+E + +L+Q + Q Sbjct: 465 SHIIFSSGANREPMPALTNHRIHNASSCALPSSADLSDPTLE-ERERVMGALEQSGWVQA 523 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA LLG+T Q +K I Sbjct: 524 KAARLLGMTPRQVAYRIKILNI 545 >UniRef50_C6NRF1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NRF1_9GAMM Length = 466 Score = 468 bits (1207), Expect = e-131, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 181/324 (55%), Gaps = 16/324 (4%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A + ++G + ++ + + +A D PVLI GE GTGKEL A +H SSR GPF+ Sbjct: 152 ASKEVEMVGASPVMQQIYQDIRKVASTDAPVLITGESGTGKELAAQAIHERSSRKDGPFV 211 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 ++NC AL NL+ SELFGHE G+FTGA +R GR E A GGTLFLDE+ P+ +Q LL Sbjct: 212 AVNCGALPANLIHSELFGHEKGSFTGAHERKIGRIESASGGTLFLDEIGDLPLDLQVNLL 271 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R ++ ++RVGG + + V+VR++ AT+ DL + G FR DL RL +++PPLR+ Sbjct: 272 RFLQEQTIQRVGGREDIAVDVRVLAATHVDLEKAIQLGNFRQDLYYRLNVLQIRMPPLRD 331 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 RE DI L+A+Y + E + GF+E A + + NY WPGNIREL N V R++ Sbjct: 332 REGDIPLLAQYVFNRFADERGQRV-KGFSEDALQIMANYDWPGNIRELINRVRRAMVMCD 390 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 D+ ++ + + + L + + E++ ++ +L + Sbjct: 391 KFLITAADLGLERRRNS---------------RIRVSLNQARDLAERDAIRSALADNLGS 435 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 RAAE L ++ L++KH I Sbjct: 436 VTRAAEQLQISRVSLYRLMEKHGI 459 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 468 bits (1207), Expect = e-131, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 187/323 (57%), Gaps = 4/323 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++G + +E E + D VLI GE GTGKEL A +H S R G FI +NC Sbjct: 259 ENIVGSSKKIIEAKEMAKIASQSDSTVLIRGESGTGKELFAHAIHDGSLRRYGAFIRVNC 318 Query: 66 AALNENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ ENLL++ELFG+E GAFTGA K PG+FE A+GGT+FLDE+ P +Q KLLR + Sbjct: 319 AAIPENLLEAELFGYEKGAFTGANKEGKPGKFELANGGTIFLDEIGDMPFDMQVKLLRAL 378 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E++R+G + + ++VR++ +TN +L ++ + FR DL RL + +PPLRE + Sbjct: 379 QEREVQRIGSERVIDLDVRIIASTNRNLEQLIAQDKFREDLYYRLNVFNINVPPLREMKD 438 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D+ + + + E+ L + G + A + L +Y WPGNIRELKNV+ERS+ + Sbjct: 439 DLEKLINFIIKDLNDEMGLNVN-GVSSEANKILNSYHWPGNIRELKNVLERSMNVAKGNI 497 Query: 245 YPLDDII--IDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 D I + + + + S++ + L+LR + EK ++ +L+Q N+ Sbjct: 498 ITKDCIPQYLLTWAGAEEQQNNSNSKSHEINLHNLELRSVVKEAEKLAIETALKQTNNNK 557 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 K+AAELL + L+++ I Sbjct: 558 KKAAELLNIHRSGLYKKLEEYNI 580 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 468 bits (1207), Expect = e-131, Method: Composition-based stats. Identities = 115/322 (35%), Positives = 194/322 (60%), Gaps = 16/322 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++GE+ + V A + VLI+GE GTGKE+ A +H S+R +GPF+ +NC Sbjct: 265 ENIIGESEPIVMAKAIVEKAAHTNSNVLILGESGTGKEIFAHAIHSESNRHEGPFVKVNC 324 Query: 66 AALNENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ +LL+SELFG+EAGAFTGA+K G+FE A+ GT+FLDE+ P+ +Q KLLRVI Sbjct: 325 AAIPSDLLESELFGYEAGAFTGAKKEGKIGKFEIANEGTIFLDEIGDMPLHMQVKLLRVI 384 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+E+VGG ++N+R++ ATN +L +V EG FR DL RL +++PPLRER + Sbjct: 385 QEREVEKVGGVASKKINIRIIAATNRNLERLVEEGKFREDLYYRLNVVTIEIPPLRERGN 444 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV-YRHGTS 243 DI+L++ + ++ ++ + G ++ A + L Y W GN+REL+N++ER++ + Sbjct: 445 DIILISNHLIKKLSVDLDKKV-KGISKEAEQYLKIYEWKGNVRELENILERAINIMENSE 503 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + D+ + ++ + +P L++ + EK + L+L+ N+ Sbjct: 504 IIQVKDLPKEITGKK-------------VSMVPKKLQDILAESEKNAIILALRAADGNKS 550 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA++L + ++K++I Sbjct: 551 KAAKILDIGRTSLYEKIEKYKI 572 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 114/318 (35%), Positives = 172/318 (54%), Gaps = 6/318 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++ ++ + V + ++ +A D VL+ GE GTGKEL+A LH+ S R I +NC Sbjct: 152 IIAKSKAMQAVTDLITKVAAHDTTVLVTGESGTGKELVARSLHFNSPRAPNALIPVNCGG 211 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + ENLL+SELFGH GAFTGA K G E A GTLFLDE+ P +Q KLLR+++ Sbjct: 212 IPENLLESELFGHVKGAFTGADKNKTGLCEIAHKGTLFLDEIGELPASLQVKLLRLLQDR 271 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E+ VG S +++R+V AT +L A V EG FR DL RL + LPPLR+R+ DI Sbjct: 272 EIRPVGASATRTIDIRIVAATARNLEADVAEGVFREDLFYRLNVLHIHLPPLRDRQEDIP 331 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+ E F + +++ + G A LL + WPGN+REL+N++ER+V Sbjct: 332 LLIETFVQEFNKKLDKTI-TGLAPAALSRLLAHTWPGNVRELENLIERAVVLAEGDTITP 390 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 DD+ D+ ++ Q EK L++ +L + N+ R ++ Sbjct: 391 DDLPP-----GFGTDSAGGPGDALAGFDGYSIKAAQKIFEKRLIEKALAKTGGNRTRTSK 445 Query: 308 LLGLTYHQFRALLKKHQI 325 LL +++ A +K++ I Sbjct: 446 LLEISHPSLLAKMKEYGI 463 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 130/321 (40%), Positives = 186/321 (57%), Gaps = 17/321 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++++ + V+E +A D VLI GE GTGKEL A +H S R PF+ LNC Sbjct: 206 NDIIYTSEKMRFVVEMAKKVARTDTTVLIRGESGTGKELFARAIHLESPRRTKPFVPLNC 265 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ E+LL+SELFG+ GAFTGA+K G E A GTLFLDE+A P +Q KLLRV+ Sbjct: 266 AAVPESLLESELFGYVEGAFTGAKKGGKQGLLEFAHEGTLFLDEIAELPTHLQAKLLRVL 325 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + G++ R+GG + + V++R++ ATN +L MV EG FR DL RL +Q+PPLRER Sbjct: 326 QEGKVRRIGGQEEIPVDIRIIAATNRNLEGMVREGKFREDLYFRLNVFPLQIPPLRERVE 385 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI ++ +F + + F TE A L Y WPGN+REL+NV+ER++ Sbjct: 386 DIEVLTYHFLNTFAKRRGIQYFE-ITENALNKLKAYSWPGNVRELQNVIERALTLADDGV 444 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 DII+D P++ V+ T L E Q EKEL++ +L+Q + ++ Sbjct: 445 IEAKDIILD-----NPQNTYFVART---------LEEAVNQVEKELIERALKQYP-SIRQ 489 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA LG+T+ R +KK ++ Sbjct: 490 AARSLGVTHTTLRNKIKKLKL 510 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 116/315 (36%), Positives = 183/315 (58%), Gaps = 16/315 (5%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + + EV + + +A D VLI GE GTGKEL++ +HY S R +GPF+ +NCAA Sbjct: 153 MVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSRAIHYNSPRNKGPFVVVNCAA 212 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E+LL+SELFG+E GAFTGA +R G+FE A+ GT+ LDE+ M+Q K+LRV++ Sbjct: 213 IPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLDEIGDMSPMLQAKILRVLQEH 272 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 +ER+GG++ + V+VR++ ATN DL ++V G+FR DL RL +QLPPLRER+ DI Sbjct: 273 VIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYFRLNVVQIQLPPLRERKEDIP 332 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A++F + E + G T L+ Y +PGN+REL+N++ R+V L Sbjct: 333 LLADHFIKKYAAETSKEV-TGVTPEVMAALMAYDYPGNVRELENIIARAVALCSGKVLTL 391 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 D + + +P L+E ++ E+ + ++ + + A+ Sbjct: 392 DVLPPQVVEPKPAL---------------RPLKEVLLEAERRAFRQAVAVAGLDPQAVAD 436 Query: 308 LLGLTYHQFRALLKK 322 LL + + LK+ Sbjct: 437 LLQVDLDYAKKRLKE 451 >UniRef50_A4VMJ3 Transcriptional regulator FleQ n=69 Tax=Gammaproteobacteria RepID=A4VMJ3_PSEU5 Length = 504 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 125/338 (36%), Positives = 182/338 (53%), Gaps = 21/338 (6%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +L+G + + V + + +A + VLI+GE GTGKE++A LHY S R QGPF+ +NC Sbjct: 160 SLVGTSRAVQHVRQMMEQVADTEASVLILGESGTGKEVVARNLHYHSKRRQGPFVPVNCG 219 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ LL+SELFGHE GAFTGA GRFE A+GGTLFLDE+ P+ +Q KLLRV++ Sbjct: 220 AIPAELLESELFGHEKGAFTGAITARAGRFELAEGGTLFLDEIGDMPLPMQVKLLRVLQE 279 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVG ++ +VR++ AT+ DL M+ EGTFR DL RL +++ PLRER DI Sbjct: 280 RTFERVGSNRTQNADVRIIAATHKDLEKMIEEGTFREDLYYRLNVFPIEMAPLRERVEDI 339 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +M E + + F A +L + WPGN+REL N+VER H Sbjct: 340 PLLMNELISRMEHEKRGSI--RFNSAAIMSLCRHDWPGNVRELANLVERMAIMHPYGVIG 397 Query: 247 LDDIII------------------DPFKRRPPEDAIAVSETTS-LPTLPLDLREFQMQQE 287 + ++ + +R + V E + LP LDL+E+ E Sbjct: 398 VMELPKKFRHVDDDDEQYATSLHDEMEERAAISAPMVVPEAQAMLPVEGLDLKEYLGNLE 457 Query: 288 KELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + L+ +L+ RAAE L + ++K+ + Sbjct: 458 QGLIHQALEDAGGVVARAAERLRIRRTTLVEKMRKYGM 495 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 124/318 (38%), Positives = 186/318 (58%), Gaps = 2/318 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++GE + ++ +A D VL++GE GTGKEL A +H LS R PF++LNCAA Sbjct: 142 IIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKELFARAIHQLSIRSTQPFVALNCAA 201 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E L+++ELFGHE GAFTGA R G+FE A+ GT+FLDE+ P+ +Q KLLRV+E Sbjct: 202 MPEGLIENELFGHEKGAFTGANTRKSGKFEMANRGTIFLDEIGELPLNLQSKLLRVLEEH 261 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 +ER+G + PLQ++VR+V ATN +L V G FR DL RLA +++PPLRER D++ Sbjct: 262 VVERLGSTMPLQLDVRVVAATNRELEQAVEAGAFRRDLYYRLAVFPIRIPPLRERGEDVI 321 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+AE+F +E+K P A L + WPGN+REL+N +ER+ H T + Sbjct: 322 LIAEHFLAHFRQELKKPRL-SLAPDALAALRAHLWPGNVRELQNTIERAAILHDT-EVTA 379 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 D+ + R ++ +LP + EK ++ +L++ K+N+ AAE Sbjct: 380 ADLGLSANLRSAAAVSLGEHSIDMGGSLPEVSAQASRTIEKAKIEATLRECKWNKSAAAE 439 Query: 308 LLGLTYHQFRALLKKHQI 325 LG++Y + + + Sbjct: 440 RLGISYKTLLTKIHGYGL 457 >UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWE6_HALO1 Length = 684 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 123/320 (38%), Positives = 182/320 (56%), Gaps = 8/320 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++GE+++ + +Q+ + V I GE GTGKELIA+ +HY S+R F++ NC Sbjct: 373 ENIIGESSAMQAIFDQLRKVVDTRATVCIEGETGTGKELIATAIHYESNRRDKMFVAQNC 432 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL ENLL+SELFGH+ GAFT A G FE ADGGTLFLDE+ P+ +Q K+LRV++ Sbjct: 433 AALPENLLESELFGHKKGAFTSADTDKKGLFEIADGGTLFLDEIGEMPLSLQAKVLRVLQ 492 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 G + +G ++ QV+ R++CATN DL A V +G+FR DL RL ++LPPLRER D Sbjct: 493 EGTIRPLGSTRERQVDARIICATNRDLAAEVEKGSFRQDLYYRLVVFPIRLPPLRERRED 552 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + E+F + RE + + GF++ + + Y+WPGNIREL+N V+R V + + Sbjct: 553 IPPLCEHFLKRYSREFRQEVL-GFSQECLDVMSTYQWPGNIRELENEVQRLVIQTDAGSW 611 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 P + L+ Q E+ LL +L++ N+ R Sbjct: 612 IE-------VSELSPRLRKVEGTLARIAPKKGTLKAMMEQVERWLLAEALREHDNNKTRT 664 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+ LG+T L K+ + Sbjct: 665 AQSLGITREGLHKKLSKYSM 684 >UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH02_SYNFM Length = 510 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 122/318 (38%), Positives = 181/318 (56%), Gaps = 16/318 (5%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + S L V + +AP VL++GE GTGK L+A LH LS R PF+ +NCA+ Sbjct: 198 MVGRSPSMLVVQRHIEKVAPSKASVLLLGESGTGKTLVAQMLHELSIRSSAPFVKINCAS 257 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L ENLL+SELFG+E GAFTGA + PGR E A+GGT+FLDE+ +Q KLLR ++ Sbjct: 258 LPENLLESELFGYEKGAFTGAVRSKPGRIEEAEGGTVFLDEVGELTPALQAKLLRFLQDK 317 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ER+G ++ V+VR++ ATN DL A+V EGTFR DL RL +Q+PPLR R+ DI Sbjct: 318 EFERLGSTRTRVVDVRVLAATNRDLAAVVAEGTFREDLYYRLNVFPIQIPPLRARKEDIP 377 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + +F ++ RE + G T A L Y WPGN+RE++N+VER V + + Sbjct: 378 DLLHHFLDRISREYGRRI--GITNAAMALLAGYDWPGNVREMENLVERMVIMADEDEIGV 435 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 + + ++ +S + E++ + +L++ +NQ R A+ Sbjct: 436 NVLPPFLSEQMTGSGGETLSR--------------IEKMERKEILAALERNGWNQTRTAK 481 Query: 308 LLGLTYHQFRALLKKHQI 325 LG+T Q ++K + Sbjct: 482 ELGITLRQIGYRVRKFGL 499 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 113/323 (34%), Positives = 173/323 (53%), Gaps = 16/323 (4%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + +++G + + V + + AP D VLI GE GTGKEL A +H S R PF+ Sbjct: 140 QKPSSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTGKELAAKMIHQYSKRADKPFVI 199 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCA L E+LL+SELFGH GAFTGA + G FE A+GGTLFLDE+ + Q KLLR Sbjct: 200 VNCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGGTLFLDEIGELTVNTQAKLLR 259 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 VI+ GE+ RVG ++ + V+ R++ AT+ +LP V EG FR DL RL ++LP LRER Sbjct: 260 VIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFREDLYFRLNVITLRLPSLRER 319 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + D+ + ++F + C+ A + Y WPGNIREL+N +ER+V Sbjct: 320 KDDLTALIQHFLQKFCK---GERTMDMHPEALHAMTLYDWPGNIRELENTIERTVVLADG 376 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + ++++ + R + + + EK + L++ +++ Sbjct: 377 NIISIEELPDNIRGR-------------TYEHYGKNGEIALSEVEKNHIIQVLKEKNWHK 423 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AA+ LG++ +K + I Sbjct: 424 PLAAKTLGISLKTLYNKMKMYNI 446 >UniRef50_A0L4D4 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=cellular organisms RepID=A0L4D4_MAGSM Length = 457 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 123/321 (38%), Positives = 189/321 (58%), Gaps = 6/321 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+ + L++L QV ++ + VLI GE GTGKEL+A +H +S R GPF+++NCAA Sbjct: 133 LVTADPAMLKLLGQVRRVSNSNATVLIQGESGTGKELMARYVHQVSDRANGPFVAINCAA 192 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L ENLL+SELFGH GAFTGA G+F +A+GGT+FLDE++ + +Q KLLRV++ Sbjct: 193 LPENLLESELFGHIKGAFTGATSDRKGKFLQANGGTIFLDEISEMTLNLQAKLLRVLQEK 252 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++ VGG P+ ++VR++ +TN DL +G FR DL RL V + PLR+R D++ Sbjct: 253 EVDPVGGKHPIALDVRVIASTNRDLKEYAADGLFREDLYYRLNVFPVFITPLRQRPKDVV 312 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A+ F + +E+ P F A + L+ YRWPGNIREL+NVV+R++ Sbjct: 313 LLADLFRQRFIKELGRNDIP-FDAAAMDALVRYRWPGNIRELENVVQRALLIAEDDAVSS 371 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLD-----LREFQMQQEKELLQLSLQQGKYNQ 302 D++I+ P ++ L D + + E+ L++ +L + N+ Sbjct: 372 HDLMIEVSGSAAPSPSMTRDADEMGMALDGDHIHMPVGTTVREMEEILIRRTLDEVDGNR 431 Query: 303 KRAAELLGLTYHQFRALLKKH 323 RAAE+LG++ R L ++ Sbjct: 432 TRAAEILGISIRTLRNKLNEY 452 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 120/319 (37%), Positives = 176/319 (55%), Gaps = 16/319 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +LL ++ + V E A + +L++GE G+GKE++A +H S R GPF++++CA Sbjct: 145 DLLSKSPAMQSVFELARTAARSNSTILVLGESGSGKEVLARAVHAESPRAGGPFVAVSCA 204 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E+LL+SELFGHE G+FTGA R G+FE A GGTLFLDE+ +Q LLRV+E Sbjct: 205 ALTESLLESELFGHEKGSFTGAISRRKGKFEAAHGGTLFLDEVGDIGPKLQLDLLRVLEE 264 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 RVGG++P++V+VR++ ATN DL +EG FR DL RL + +PPLRER DI Sbjct: 265 RRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFREDLFYRLNVIPILVPPLRERREDI 324 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ E F ++ E+K + G + A L+ + WPGN+REL+NV+ER + Sbjct: 325 PLLVENFVERLSVEMKRRI-EGVSPDAMGALMAHDWPGNVRELRNVLERGAVVATGTVIQ 383 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 L D+ + E S P L E EK + L N ++A Sbjct: 384 LSDLGL-----------PTRLEAASKPGTLASLEE----VEKRHVAAVLAHANGNVSQSA 428 Query: 307 ELLGLTYHQFRALLKKHQI 325 +LG+ ++K+ + Sbjct: 429 RILGIDRVTLYNKMRKYGL 447 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 467 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 133/340 (39%), Positives = 185/340 (54%), Gaps = 22/340 (6%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G + + VLEQV +A D VLI+GE GTGKELIA +H LS R + I +NCA Sbjct: 386 DIIGISPAIRGVLEQVELVADSDSTVLILGETGTGKELIARAIHMLSQRKKRTMIKVNCA 445 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ LL+S+LFGHE GAFTGA + GRFE AD GTLFLDE+ P+ +Q KLLR ++ Sbjct: 446 AIPSALLESDLFGHEKGAFTGAIAQKSGRFELADRGTLFLDEVGDIPIDLQPKLLRALQE 505 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ERVGG QP+ V+VR++ ATN DL MV + FR DL RL + +PPLRER DI Sbjct: 506 REIERVGGHQPIPVDVRMIAATNRDLTGMVEKRLFRGDLYYRLNVFPILIPPLRERREDI 565 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 LMA+YF + R++ + F+ + LLN WPGN+REL+NV+ER+V Sbjct: 566 PLMADYFMRKTARKMNRAI-EAFSAETMDMLLNLPWPGNVRELQNVIERAVILTKGPVLH 624 Query: 247 LDD----IIIDPFKRRPPEDAIAVSETTSLPTL--------------PLDLREFQMQQEK 288 L + P P EDA+ LP+ P E+ Sbjct: 625 LPATELRHHLAPSAALPSEDAVIPLRAAVLPSAASAPDPLPPPAGSSPNPGDLAGEAIER 684 Query: 289 ELLQLSLQQGKYNQ---KRAAELLGLTYHQFRALLKKHQI 325 + + L++ + AA LG+ + +++ I Sbjct: 685 DQILRVLRETNGIVGGPRGAAAHLGMKRTTLLSRMRRLGI 724 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 467 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 128/328 (39%), Positives = 188/328 (57%), Gaps = 9/328 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G+ +VLE+V +A D VLI GE GTGKE+IA+ +H S R I ++C Sbjct: 141 DGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEVIANAIHRNSPRCGQALIKVSC 200 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL E LL++ELFGHE GAFTGA K+ GRFE A GTLFLDE+ MVQ KLLRV++ Sbjct: 201 AALPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTLFLDEIGEIAPMVQVKLLRVLQ 260 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ERVGG++ + +VRLVCAT +L V G FR DL RL V LPPLRER+ D Sbjct: 261 EKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFREDLFYRLNVVQVALPPLRERKED 320 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH-GTSD 244 I+++AE+ + ++ + GF+ AR+ LL+Y +PGN+REL+N +ER+V + Sbjct: 321 ILVLAEHLLQRSTSRVQR-VMKGFSVAARDVLLHYSFPGNVRELENAIERAVALAQEGDE 379 Query: 245 YPLDDI---IIDPFKRRPPEDAIAVSE----TTSLPTLPLDLREFQMQQEKELLQLSLQQ 297 D+ + PF P + + + L E + + E+E + L++ Sbjct: 380 IQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSNVTNARQTGTLAEVRERCEREYILAVLER 439 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 +++ A++ LGL+ K++ + Sbjct: 440 EGWSRTAASKSLGLSRKALWEKCKRYGL 467 >UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJF4_9DELT Length = 507 Score = 467 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 124/320 (38%), Positives = 179/320 (55%), Gaps = 2/320 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G S +V ++++ ++ D VL+ GE GTGKEL+A +H+ S R + PF+++NCA Sbjct: 189 NIIGNHKSMAQVYDRIARVSSADTTVLLRGESGTGKELVARAIHFASPRAEAPFVAVNCA 248 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E L+SELFGHE GAFTGA GRFE ADGGTLFLDE+ Q KLLRV++ Sbjct: 249 ALPEGTLESELFGHERGAFTGAIGARKGRFELADGGTLFLDEIGELRPHTQVKLLRVLQE 308 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVGG+ + +VR++ AT+ADL A + G FR DL RL + LPPLRER DI Sbjct: 309 RRFERVGGATTRRCDVRVLTATHADLEAAMARGEFREDLYYRLNVFEIMLPPLRERGEDI 368 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +A++F + + P A LL + WPGN+REL+N +ER+V Sbjct: 369 LALADFFVERYGPR-QRPPVTRIGHDAARHLLAWDWPGNVRELENCIERAVLLTNDGVIE 427 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTL-PLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + + P A A + S L E E+E+L+ +L N+ A Sbjct: 428 AEHLPPTLRGAAGPSRARASNTPASRAVAEGRTLDEALEAVEREILERALADSGGNRASA 487 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LG++ + +KK+++ Sbjct: 488 ARALGISERRMGLRVKKYRL 507 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 467 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 135/328 (41%), Positives = 188/328 (57%), Gaps = 22/328 (6%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 ++ D ++ F++ L+ V +AP D VLI+GE G GKELIA +H LS+R P Sbjct: 158 LSNNFDEIVTGNPIFMKALQLVEQVAPTDASVLILGETGVGKELIARAIHNLSNRRDRPL 217 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I LNCAAL L+++ELFGHE GAFTGA R PGRF+ ADGGTLFLDE+ PM +Q KL Sbjct: 218 IRLNCAALPATLMENELFGHERGAFTGANCRKPGRFDLADGGTLFLDEVGDLPMELQSKL 277 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ GE ER+GG++ ++V+VR++ AT+ DL A++ EG FR+DL RL +Q PPLR Sbjct: 278 LRVLQEGEFERLGGAETIKVDVRILAATHVDLKALLAEGRFRSDLYYRLNVFPIQCPPLR 337 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI L+ +F C + + E+L Y WPGNIREL+NV+ER+V Sbjct: 338 ERREDIPLLVRHFVKASCEKNGKSI-ELIPRHVMESLEGYPWPGNIRELQNVIERAVIIS 396 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + +D + P+ IA P E+E + +L+ + Sbjct: 397 RGNKLEIDSL---------PKMVIAADAAPISP---------LEVTEREHIIRALETTAW 438 Query: 301 ---NQKRAAELLGLTYHQFRALLKKHQI 325 K AAE+LGL +A ++K I Sbjct: 439 RVGGPKGAAEILGLKRTTLQARMRKLGI 466 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 467 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 124/321 (38%), Positives = 178/321 (55%), Gaps = 10/321 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 N+ G + ++ + +A D +LI GE G GKEL A +H S R + FI +NC Sbjct: 147 SNIKGNNLAIQHIIHDMKKVAKTDATILITGESGVGKELFAQAIHEASLRSKKAFIPINC 206 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 A+ L +SELFG+E+GA+TGA K PG+ E ADGGTLFLDE+ P+ +Q KLLR + Sbjct: 207 GAIPNALFESELFGYESGAYTGAAKGGKPGKIELADGGTLFLDEVGELPLDMQVKLLRAL 266 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ R+GG P +++VR++ ATN L MV GTFR+DL RL +PPLRER Sbjct: 267 QEKEIYRIGGQTPKKIDVRIIAATNRILEDMVLNGTFRSDLFYRLNVFTACIPPLRERTD 326 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI +A +F + + P P + A + L Y WPGNIREL+N +ER + H S+ Sbjct: 327 DISYLAHHFFKEFSFKYNKP-TPFVHQEATKRLHAYSWPGNIRELRNFIERLIVLHEGSE 385 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 DI+ + A + SE S T L L + + EK + +LQQ N+ Sbjct: 386 IYESDIL------KLLPQAKSFSEPVSQTT--LSLTDERESLEKTRILQTLQQTYGNKSI 437 Query: 305 AAELLGLTYHQFRALLKKHQI 325 A+ LG++ +KK++I Sbjct: 438 TAKKLGMSRANLYKKIKKYRI 458 >UniRef50_Q3A203 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A203_PELCD Length = 575 Score = 467 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 176/323 (54%), Gaps = 16/323 (4%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + ++ ++ +V + LA + VLI+GE GTGKEL+A LH R P + Sbjct: 262 QSFHRMIATSSKMQQVFGLIETLAQVPSTVLILGESGTGKELVAEALHLSGPRKNRPLVK 321 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAAL++ LL+SELFGH G+FTGA K H GRF++ADGGT+FLDE+ +Q +LLR Sbjct: 322 VNCAALSDTLLESELFGHVKGSFTGAVKDHVGRFQKADGGTIFLDEIGDISPRMQLRLLR 381 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E+ER+G S P++V+VR+V ATN DL V G FR DL RL + LPPLRER Sbjct: 382 VLQEKEVERIGDSTPVKVDVRIVAATNQDLEEKVRSGEFRQDLYYRLKVITLALPPLRER 441 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + DI M ++F + + L G + + Y WPGN+R+L++ +E + Sbjct: 442 KEDIPPMVDHFIQRYNEVLGRNL-QGVDQEVMRAMQAYDWPGNVRQLEHAIEHILIHCTE 500 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 PL + P + E A+ S +QE++ + +L + +N+ Sbjct: 501 ---PLASLAHVPEEILQGEQAVGKYCADS------------EEQEQQQILAALDKTDWNK 545 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 +AA LLG+ ++K + Sbjct: 546 AKAARLLGIDRKTLYRKIEKFGL 568 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 467 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 123/315 (39%), Positives = 181/315 (57%), Gaps = 16/315 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++ + QV + + VLI GE GTGKEL A +H S+R + PFI +NC+ Sbjct: 376 SIVCRDERIATLKSQVLQVGRSNSTVLITGESGTGKELFAHSIHNASNRRKEPFIKVNCS 435 Query: 67 ALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ L ++ELFG+E GAFTGA+K+ PG+FE AD GT+FLDE+ P+ +Q KLLRVI+ Sbjct: 436 AIPGELAEAELFGYEDGAFTGARKQGKPGKFELADCGTIFLDEIGDMPLALQSKLLRVIQ 495 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ERVGG + +V+VR++ ATN DL MV EGTFR DL R+ +++PPLR+R D Sbjct: 496 DKEIERVGGVKARKVDVRIIAATNRDLKRMVTEGTFREDLYFRINVVELKIPPLRDRRKD 555 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A+ F + ++ + G TE A E L Y WPGNIREL+N++ER + + Sbjct: 556 IPLLADTFIRKYNNQLGRRV-EGITEAALEALTRYDWPGNIRELENIIERMLNYRESGLI 614 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 L D+ PE+ + + + E E +Q +L + N+ +A Sbjct: 615 ELQDL---------PEEIVGRPGGMAAKAT-----QTLAVMEMETIQAALAEAGGNKSKA 660 Query: 306 AELLGLTYHQFRALL 320 A LLG++ + L Sbjct: 661 ARLLGISRSKLYEKL 675 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 467 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 113/316 (35%), Positives = 181/316 (57%), Gaps = 5/316 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++G + E+ ++ +A D +LI GE GTGKEL+A LH+ S+R PF+++NC Sbjct: 140 ENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVARALHFNSTRQHQPFVAINC 199 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +AL ENLL+SELFGH+ G+FTGA + G FE A+GGT+FLDE+ + +Q KLLRV++ Sbjct: 200 SALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFLDEVNSMAQPLQTKLLRVLQ 259 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ++ RVG ++ + +NVR++ ATN L + G FR DL RLA V++P LRER D Sbjct: 260 ERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLYYRLAVIPVEMPALRERPDD 319 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ +F + + +A E L YRWPGN+REL+N VER+ + Sbjct: 320 IPLLVSHFLQKNAAQTGTE-AKKIDPKAIEMLAKYRWPGNVRELENAVERACALCDDALI 378 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D+ + E + + L E+ +QE+ ++ +++ ++++A Sbjct: 379 RTTDLPPQVIRHATAPPV----EHSGTLPVGQTLDEYIREQERRYIEETIKFNGNSREKA 434 Query: 306 AELLGLTYHQFRALLK 321 A++LG++ L+ Sbjct: 435 AKMLGISMATLYRKLE 450 >UniRef50_P19323 Formate hydrogenlyase transcriptional activator n=72 Tax=Enterobacteriaceae RepID=FHLA_ECOLI Length = 692 Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 124/322 (38%), Positives = 176/322 (54%), Gaps = 18/322 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + + VL+QV +A D VLI+GE GTGKELIA +H LS R + +NCA Sbjct: 380 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCA 439 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ LL+S+LFGHE GAFTGA + GRFE AD +LFLDE+ P+ +Q KLLRV++ Sbjct: 440 AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQE 499 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ER+G ++ +Q +VRL+ ATN DL MV + FR+DL RL + LPPLRER DI Sbjct: 500 QEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDI 559 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A+ F ++ R + + TL N WPGN+REL+NV+ER+V + Sbjct: 560 PLLAKAFTFKIARRLGRNID-SIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQ 618 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK--- 303 L I + P A V+ + + E +L+ L++ Sbjct: 619 LSLPDIVLPEPETPPAATVVA--------------LEGEDEYQLIVRVLKETNGVVAGPK 664 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AA+ LGL + +K+ I Sbjct: 665 GAAQRLGLKRTTLLSRMKRLGI 686 >UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4R9_DESRM Length = 568 Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 127/323 (39%), Positives = 191/323 (59%), Gaps = 10/323 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G+ + ++LE + +A + VL+ GE GTGKEL A +H LSSR GPF+++NCA Sbjct: 250 GIIGKGPALQKILEIIKQVAKSESTVLLRGESGTGKELFAHSIHELSSRNSGPFVAINCA 309 Query: 67 ALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ E LL+SELFG+E G+FTGA+K PG+ E A+ GTLFLDE+ P+ +Q KLLRVI+ Sbjct: 310 AIPEALLESELFGYEEGSFTGARKGGKPGKVELANNGTLFLDEIGDMPLTLQAKLLRVIQ 369 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 +E VG S PL +NVRL+ AT+ +L M+ GTFR DL RL + +PPLR+R D Sbjct: 370 EKNIEPVGCSYPLPINVRLIAATHRNLEEMIGTGTFREDLFFRLNVIPIFIPPLRQRPED 429 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 L+ Y+ + C +K P F + A + L+ Y WPGNIREL+N+VE V H Sbjct: 430 TELLLHYYLRKYCILLKKP-FKILSYAALQQLVKYHWPGNIRELENLVEYLVNIHNQDII 488 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN---Q 302 +D+ I + E+ + P P + + + EL+Q+ L + ++ + Sbjct: 489 SPEDLPITIQQPIKEENQPIGIQ----PVEPQTRKSSGQRSQAELIQM-LNRFGWHTDGK 543 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 K+AA LG++ +KK+++ Sbjct: 544 KKAAAALGVSLATLYRRIKKYKL 566 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 184/319 (57%), Gaps = 9/319 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++LG+ EV V+ +A VLI+GE GTGKEL+A +H S R PF+++NCA Sbjct: 147 SMLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKELVARAIHEGSQRRDNPFMAINCA 206 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E L++SELFGHE G+FTGA R G FE A+GGT+FLDE+ + +Q KLLR I+ Sbjct: 207 AIPETLIESELFGHEKGSFTGAHARELGVFEAANGGTVFLDEIGEMNVSMQAKLLRAIQE 266 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ RVGG + ++VR++ ATN +L + G+FR DL RL + LPPLRER SD+ Sbjct: 267 KEVRRVGGRVNIPLDVRIISATNKELEQEIRRGSFREDLYYRLNVIRINLPPLRERGSDV 326 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +AE+F + + + G + A + L+NY WPGN+R+L++V+ER+V +S Sbjct: 327 KTLAEFFVKKYSLATGIDV-EGISRPALKLLMNYSWPGNVRQLESVIERAVLMAESSVIE 385 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 D+ + + LP +D+ EK L+ ++++ + +AA Sbjct: 386 PGDLPAEITSTSLLAGVVPF----DLPPEGIDMETL----EKNLIIKAMERADWVIGKAA 437 Query: 307 ELLGLTYHQFRALLKKHQI 325 LLG++Y + L+K I Sbjct: 438 PLLGMSYKTLQYRLEKFAI 456 >UniRef50_A1VHZ7 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VHZ7_DESVV Length = 476 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 175/319 (54%), Gaps = 12/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G S V E V+ +A PVL+ GE GTGKEL+A +H L R F+++NC Sbjct: 168 GIVGRCPSMRAVFETVAKVAVTGAPVLVTGESGTGKELVARAIHALGPRCTRTFVAINCG 227 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ +NLL++E FG+E GAFTGA +R G+ E ADGGTLFLDE+ P +Q KLLR ++ Sbjct: 228 AIPDNLLEAEFFGYEKGAFTGATQRVQGKVEYADGGTLFLDEIGELPANLQVKLLRFLQE 287 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ++RVGG + + V+ R+V ATN D+ + G FR DL R+ V LPPLR R DI Sbjct: 288 KVIQRVGGRKDIAVDARIVAATNRDIQTEIASGRFREDLYYRIGVVPVALPPLRARGDDI 347 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +L+A +F E GF+ A + +L Y WPGN+REL+N V R+V Sbjct: 348 LLLARHFLESSAGE-GTGNIVGFSPAAEQAMLRYAWPGNVRELENKVRRAVIFASGRRIM 406 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 DD+ D + P LRE + E++++ +L + N +A+ Sbjct: 407 PDDLGFD-----------ETPAKAAAPRPEGSLREARNALERDMVLSALDKCGGNIVQAS 455 Query: 307 ELLGLTYHQFRALLKKHQI 325 +G++ F LL+KH I Sbjct: 456 LAIGVSRPTFYDLLRKHGI 474 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 466 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 125/345 (36%), Positives = 189/345 (54%), Gaps = 26/345 (7%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + ++G FL +LE+ +A VL++GE GTGKE+ A +H++S R GPF++LN Sbjct: 145 QRTVIGRDAHFLRLLERARAVASSKATVLVLGESGTGKEVFARFIHHVSDRKAGPFVALN 204 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAAL E LL+SELFGHE GAFTGA G+FE+A GGTL LDE+ P+ +Q KLLRV+ Sbjct: 205 CAALPEGLLESELFGHEKGAFTGAVMSKKGKFEQAHGGTLLLDEIGEVPLHLQAKLLRVL 264 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E++R+GG +P++V+V ++ TN DL A V EG FR DL RL ++LP +RER Sbjct: 265 QEEEVDRLGGKEPVKVDVHVLATTNRDLGAAVREGNFREDLFYRLNVIPIRLPAMRERPE 324 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+A++F + + P + +R+ L Y+WPGN+REL+N+VER+V + Sbjct: 325 DISLLADHFIEKYTARYQKP-AKKLSAASRQRFLEYQWPGNVRELENLVERAVLLSAGPE 383 Query: 245 YPL----DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDL--------------------- 279 +D + D P DL Sbjct: 384 LEPWDFWEDELPPAGAVTGATDPELAGSANPEPVAAADLALAGSNTDAAASAAEIAIDPS 443 Query: 280 REFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 R E++++ +L+Q N+ AA++LG++ R L +++ Sbjct: 444 RHSLWDVERQMILRALRQTSDNRTHAAKMLGISVRTLRNKLNEYR 488 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 466 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 114/316 (36%), Positives = 174/316 (55%), Gaps = 2/316 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + +V + +AP + VLI GE GTGKEL+A LH LS R PF+++NCAA Sbjct: 165 MVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGKELVAKTLHELSPRKNKPFVAVNCAA 224 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E L++SE+FGHE GAFTGA +R G FE A+ GTL LDE+ P+ Q KLLRV+E Sbjct: 225 IPETLIESEIFGHEKGAFTGAIERRAGCFELAEEGTLLLDEIGEMPIGTQAKLLRVLEDR 284 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 R+G ++VR++ ATN + V +G R DL RL + +PPLRE + DI Sbjct: 285 RYRRLGSKVETPIDVRVLAATNKNPDQAVADGELRGDLYYRLNVFNIHMPPLREHKEDIP 344 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +A+ M + + G + + LL+Y WPGN+REL+N +ER+V Sbjct: 345 AIAQRMIADMTSKHDRAI-EGMDDEMQARLLSYDWPGNVRELRNTMERAVILCTGDRLQA 403 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 + RP + A +E + + +++ + E+ L+ +L+ N+ RAAE Sbjct: 404 QHLPPGFGTARPLKTAAVTAEPPAN-AVQVEVGTTVDEAERLLILKTLESTHNNKTRAAE 462 Query: 308 LLGLTYHQFRALLKKH 323 +LG++ LK++ Sbjct: 463 ILGISLKTLHNKLKEY 478 >UniRef50_A3EU11 Putative sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3EU11_9BACT Length = 463 Score = 466 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 125/321 (38%), Positives = 177/321 (55%), Gaps = 14/321 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + +++G + S +E + +A D VLI GE GTGKEL+A +H S R GPFI+LN Sbjct: 156 ESDMVGSSPSMMECFRSIRKIAGTDACVLITGESGTGKELVARAIHERSKRSSGPFITLN 215 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A+ NL+ SELFG+E GAFTGA R G E A+ GT+ LDE+ P +Q LLRV+ Sbjct: 216 CGAIPSNLIQSELFGYEKGAFTGAHSRKIGHIEAANHGTIMLDEIGDMPFELQVNLLRVL 275 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 ++G+++RVG S + V+VR++ AT+ DL EG FR DL RL V LPPLR+R + Sbjct: 276 QFGKIQRVGSSAEIPVDVRIIAATHIDLEKACREGRFREDLYYRLHVLRVSLPPLRDRGA 335 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+A YF + E P F+ A E + Y WPGN+REL N ++ +V Sbjct: 336 DISLLARYFCKRFSAEYGATSKP-FSAEALEVIQAYSWPGNVRELINKIKSAVLMSEGPL 394 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 D+ ++ + LRE + E+E L+ +LQ+ + N R Sbjct: 395 IEPRDLQLENMPHPAKKS-------------GKTLREIREITERETLRETLQKFENNVSR 441 Query: 305 AAELLGLTYHQFRALLKKHQI 325 A LG+T LLKKH++ Sbjct: 442 TARELGVTRTTLYDLLKKHKL 462 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 466 bits (1200), Expect = e-130, Method: Composition-based stats. Identities = 118/328 (35%), Positives = 175/328 (53%), Gaps = 19/328 (5%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 +A ++ + + +VL +V +A + VL+ GE GTGKEL+A +H +S R P Sbjct: 476 LAFNYQEMVYSSQAISQVLTEVEQVAATNATVLLQGESGTGKELLARAIHNISPRSGKPM 535 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I +NCAA+ LL+SELFGH+ GAFTGA G+FE ADGGTLFLDE+ P+ +Q KL Sbjct: 536 IKVNCAAIPGELLESELFGHKKGAFTGAVSNKVGKFELADGGTLFLDEIGELPLEMQPKL 595 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LR ++ GE+E VGG++ +++VR++ ATN L V +G FR DL R+ +++PPLR Sbjct: 596 LRFLQEGEIEVVGGTEVRKLDVRIIAATNRYLKEEVEKGDFREDLYFRINVFPIEVPPLR 655 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DI ++ E+F + R+ + TE A L Y WPGNIREL+N++ER+ Sbjct: 656 ERKEDIPILVEHFMDKFNRKYGKNI-SFVTEEAMSQLKQYEWPGNIRELENLLERATIVS 714 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + K + P +S TT ++ + L + Sbjct: 715 RGETLIIPGFESQSQKSKMPLRNNNLSLTT---------------VQRNHILHVLDMCDW 759 Query: 301 NQK---RAAELLGLTYHQFRALLKKHQI 325 AAELL + R ++K I Sbjct: 760 KITGQGGAAELLDMRPSTLRDRMQKLGI 787 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 466 bits (1200), Expect = e-130, Method: Composition-based stats. Identities = 122/321 (38%), Positives = 180/321 (56%), Gaps = 11/321 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN+ ++ + A D VLI GE G GKE+ A +H S R PFI +NC Sbjct: 153 DNIKTCSSKMEACKQNAKKAARTDLNVLITGESGVGKEIFAQAIHNESHRSDHPFIKVNC 212 Query: 66 AALNENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ ENLL+SELFG++ GAFTGA K PG+FE AD GTLF DE+ P +Q KLLRVI Sbjct: 213 AAIPENLLESELFGYQGGAFTGASKEGKPGKFELADKGTLFFDEIGDMPKKMQAKLLRVI 272 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + GE+ER+GG + +V+VR++ ATN +L +V FR DL R+ + +PPL++R+ Sbjct: 273 QEGEVERLGGQKEQEVDVRIIAATNKNLEELVATDDFREDLFYRINVLTLNIPPLKDRKE 332 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+AE F + +E+ ++ A E L Y WPGNIR+LKN+++R T+ Sbjct: 333 DIALLAEDFLYETKQEMGEN--KQISQEAVEVLQKYDWPGNIRQLKNIIQRLAVNAETTV 390 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 DI I K+ ++ + E L E Q EK++++ +L+ +N+ Sbjct: 391 IEKSDIPIKLLKQLQISESPSYPEEG--------LNEIVEQVEKKVIRETLELYDFNKSM 442 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA +L + +KK+ + Sbjct: 443 AASILNIPRSTLYRKMKKYGL 463 >UniRef50_A3ERY0 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERY0_9BACT Length = 471 Score = 466 bits (1200), Expect = e-130, Method: Composition-based stats. Identities = 119/319 (37%), Positives = 178/319 (55%), Gaps = 11/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++ + E+L + ++ D VLI GE GTGKEL A +H S R GPF+++NC Sbjct: 157 GIVTKNPGMKEMLRILQKISATDVSVLITGESGTGKELFARAIHERSPRKNGPFVAINCG 216 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E+LL+SELFGHE GAFTGA + G+FE A GTLFLDE+A + +Q KLLRV++ Sbjct: 217 AIPESLLESELFGHEKGAFTGATESRAGKFEAAHHGTLFLDEVAELQIELQVKLLRVLQD 276 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 +ERVG Q++VR++ ATN L ++ G FR DL RL+ LPPLR+R D+ Sbjct: 277 KIVERVGSRNGKQLDVRIIAATNQPLNELMARGRFREDLYYRLSVMSFHLPPLRDRGEDV 336 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +L+A++F + E P F + + + WPGNIREL+N ++R+V Sbjct: 337 LLLAQHFLEKFRTEYNKPQVIDFNRECLDVIRKHDWPGNIRELENRIQRAVIIASGKWVT 396 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 +D+ I R+ E TL ++L + + EK +L + +Q + N A Sbjct: 397 REDLDIGLDSRKHGES-----------TLSMNLTGAREEAEKRMLVEAFEQARGNISHVA 445 Query: 307 ELLGLTYHQFRALLKKHQI 325 ++G + AL+KKH + Sbjct: 446 RMIGTSRPTVHALIKKHGL 464 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 466 bits (1200), Expect = e-130, Method: Composition-based stats. Identities = 128/322 (39%), Positives = 184/322 (57%), Gaps = 3/322 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++LGE+ + +L QV+ LAP+D VLI GE GTGKELIA LH S R F+++NC Sbjct: 144 HILGESPALHALLRQVARLAPVDTTVLISGESGTGKELIARELHVRSPRAPMSFVAVNCG 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ L++SELFGH GAFT A+ G F ADGGTLFLDE+ P+ Q KLLRV++ Sbjct: 204 AIPSGLIESELFGHAKGAFTDARTAKRGLFAEADGGTLFLDEVGELPLAAQVKLLRVLQE 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE+ VG ++ +VNVR+V AT DL +V +G FR DL RL +++PPLRER D+ Sbjct: 264 GEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGDFREDLYYRLNVVNLRVPPLRERREDV 323 Query: 187 MLMAEYFAIQMCREIKL-PLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 L+A F + RE+ P G T A L +Y WPGN+REL+N +ER+V Sbjct: 324 PLLARAFIARFNRELNREPPVAGLTAEAEALLKSYAWPGNVRELENAMERAVLLADEPHI 383 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSL--PTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 ++ + PP + L L+ + E+ ++ +L++ K N+ Sbjct: 384 LPANLPERLWAASPPGPHGEKPHGDPVLQGGGDLSLKRAIRELEESYIRAALRKTKGNRT 443 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 RAAELL +++ +K++ I Sbjct: 444 RAAELLDISHRALLYKIKEYGI 465 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 466 bits (1200), Expect = e-130, Method: Composition-based stats. Identities = 117/332 (35%), Positives = 173/332 (52%), Gaps = 10/332 (3%) Query: 1 MAEYKDN------LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 +A+YKD + G++ ++ + + VLI+GE G GKE+ A +H S Sbjct: 224 VAKYKDTSDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHEASE 283 Query: 55 RWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQ-KRHPGRFERADGGTLFLDELATAP 113 PFIS+NC A+ E L +SELFG+E GAF+GA K G+ E A GGTLFLDE+ P Sbjct: 284 TANAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMP 343 Query: 114 MMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDV 173 + +Q KLLRV++ + RVGG + + ++ R++ ATN DL + +GTFR DL RL Sbjct: 344 LDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVS 403 Query: 174 VQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVV 233 + +PPLRER DI+ + F P+ LL+Y WPGNIREL+NVV Sbjct: 404 LHIPPLRERREDIIELTYTFLNDFSINYNRPI-RDLPSSIMHELLHYNWPGNIRELRNVV 462 Query: 234 ERSVYRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQL 293 ER V + + E+ + S S L L+E + EK++++ Sbjct: 463 ERLVVFATDGIIKQEYLPF--HTNDTLENETSHSLLLSNNNTILSLQEEMDEHEKKIIER 520 Query: 294 SLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +L+ N+ A+ LG+T LK+ + Sbjct: 521 ALRILDGNKLECAKQLGVTRATLYNRLKRLGL 552 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 466 bits (1200), Expect = e-130, Method: Composition-based stats. Identities = 122/322 (37%), Positives = 170/322 (52%), Gaps = 4/322 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 + G + S +E+ Q+ +AP D VLI GE GTGKE+ A +H S R P +++NCA Sbjct: 141 EMTGNSASIVELRGQIGRVAPTDAWVLITGENGTGKEIAARSIHASSRRKDKPLVAVNCA 200 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E L++SELFGHE GAFTGA+ G+FE A GTLFLDE+A + Q K+LR+++ Sbjct: 201 AIPEELIESELFGHEKGAFTGAETAKTGKFEMAHQGTLFLDEIADMSLKTQAKILRILQE 260 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVGG + ++V+VR++ ATN L + G FR DL RL + +PPLR+R D+ Sbjct: 261 QSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGRFREDLYYRLRVIPLVVPPLRQRGDDV 320 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 ML+ F +M E F A LL Y WPGN+RELKN VER + H Sbjct: 321 MLLIGEFMNRMTAEHGFRPVT-FAPDACSALLCYHWPGNVRELKNFVERMLIMHSGQTVT 379 Query: 247 LDDIIID---PFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + + P+ A +P +D + + E L+ LQ+ N Sbjct: 380 AAMLPPEYRCAGAGIMPQPCTAGPSDGMIPEGVMDFKAARTAFEARFLEAKLQEFGGNIT 439 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 R AE +GL LK + I Sbjct: 440 RLAEAIGLERSYLYRKLKSYNI 461 >UniRef50_Q01QL4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QL4_SOLUE Length = 457 Score = 465 bits (1199), Expect = e-130, Method: Composition-based stats. Identities = 128/320 (40%), Positives = 183/320 (57%), Gaps = 2/320 (0%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 AE+ L+G + ++ + +A VLI GE GTGKEL A LH R GP + Sbjct: 131 AEWTRQLIGGSRGMRQLHHIIHLVAGRRSTVLITGETGTGKELAARALHLGGKRSSGPMV 190 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 S+NC AL E+LL+SELFGH GAFTGA + GRFE+A GGTLFLDE+ P+ +Q KLL Sbjct: 191 SVNCHALPESLLESELFGHVRGAFTGAFQNRIGRFEQAQGGTLFLDEIGELPIDLQAKLL 250 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ E++R+G S+ ++V++R+V ATN DLP + EG FR DL RL +++PPLR Sbjct: 251 RVLQEREVQRLGSSETIKVDIRVVAATNCDLPRRIEEGKFREDLYYRLNVVPLEMPPLRR 310 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R D+ ++A +F + CR +P T A E L Y WPGN+R+L+NVVE ++ Sbjct: 311 RLEDVPMLAAHFVEKACRAESIP-PKMLTREALELLCGYSWPGNVRQLENVVEMAIALSE 369 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 + P R P A A +LP LD E+ +L+ +L++ N Sbjct: 370 DRRTLTPMDFVLPATTRKPAPA-APGPLIALPADGLDYERTLAVIERSILEQALRRTGGN 428 Query: 302 QKRAAELLGLTYHQFRALLK 321 +K AA++L L A ++ Sbjct: 429 KKAAADMLHLKRTTLSAKVR 448 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 465 bits (1199), Expect = e-130, Method: Composition-based stats. Identities = 130/319 (40%), Positives = 178/319 (55%), Gaps = 8/319 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++ ++ + VL V +AP VLI GE GTGKE+IA +H S+R + FI+++CA Sbjct: 152 QIIYQSVAMENVLRTVQQIAPARSSVLITGETGTGKEVIAKAIHAASTRSKKAFIAVHCA 211 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ALN NL +SELFGHE G+FTGA ++ GRFE ADGGTLFLDE+ Q KLLR++E Sbjct: 212 ALNANLFESELFGHEKGSFTGANEKRIGRFEAADGGTLFLDEIGEIDAATQVKLLRILES 271 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVGG++ L + RL+ ATN DL MV G FR DL RL ++LPPLR+R DI Sbjct: 272 RSFERVGGNETLYSDARLIAATNRDLRKMVQAGEFREDLYYRLDVINLELPPLRDRREDI 331 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +++ I E +L + GFT A L Y WPGN+REL+NVVER Sbjct: 332 PALLQHWLISSVTENQLNV-KGFTADAMARLCTYDWPGNVRELRNVVERMAVLSQQEYL- 389 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 D+ P E ++ + LD + EK L+ +L++ N+ AA Sbjct: 390 --DLPNLPDHVLLGEQQLSETAKIEDKDKALD----VAENEKVLILKALKESNNNRTLAA 443 Query: 307 ELLGLTYHQFRALLKKHQI 325 E LG++ LK+ I Sbjct: 444 ERLGMSRRTLHRRLKQFGI 462 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 465 bits (1199), Expect = e-130, Method: Composition-based stats. Identities = 119/320 (37%), Positives = 176/320 (55%), Gaps = 10/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D L+GE+ ++ E ++ +AP VLI GE GTGKEL A +H S R + PF+++NC Sbjct: 143 DELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGKELAAKLIHKWSGRHKQPFLAINC 202 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AL E LL+SELFGH GAFTGA + PG FE D GTLFLDE+ + + Q KLLRV++ Sbjct: 203 GALPETLLESELFGHVKGAFTGADQDKPGLFETVDQGTLFLDEIDSMTLNFQVKLLRVLQ 262 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 G +VGG QP + +VR++ A++ L V G+FR DL RL ++LPPLR+R D Sbjct: 263 EGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGSFRRDLFYRLNVVSLELPPLRQRRED 322 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A +F + + + LL++ WPGN+REL+N VER++ + Sbjct: 323 IPLLAHHFLAKYNAKYDKQV-QTIPAPVITRLLDHSWPGNVRELENAVERALLFCPGQEL 381 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + + E + SL EK+L+ +LQ+ ++ + Sbjct: 382 QAEHLPPLETGGEEAELHTTADDAKSL---------TMASMEKKLIIKALQRANGHRGKT 432 Query: 306 AELLGLTYHQFRALLKKHQI 325 AELLG++ +KK++I Sbjct: 433 AELLGISPASLWRKIKKYEI 452 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 465 bits (1199), Expect = e-130, Method: Composition-based stats. Identities = 110/325 (33%), Positives = 182/325 (56%), Gaps = 6/325 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G + ++ + +S +AP VLI GE GTGKEL+A +H LS F+ + C Sbjct: 139 EGIIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGKELVARAIHRLSPASGHEFVPIVC 198 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +A+ E+L +SE+FGH GAFTGA G FE+A+ GT FLDE+ ++Q KLLRV++ Sbjct: 199 SAIPESLFESEVFGHTKGAFTGAASSRAGLFEQANQGTAFLDEIGELTPIIQTKLLRVLQ 258 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E++RVG ++ ++ +R++ ATN DL V G FR DL RLA +++PPLRER+ D Sbjct: 259 EREIKRVGATESTRIQIRVISATNKDLEEEVMAGRFREDLFYRLAVVPIRVPPLRERKGD 318 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + L+ ++F + R + + A E LL+Y +PGN+REL+N++ER V + Sbjct: 319 VPLLVDHFLAKYARLFNKDIHR-ISSYAMEVLLDYDFPGNVRELENIIERGVAMENSQII 377 Query: 246 PLDDIIIDPFKRRPPEDAIAVS-----ETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + + + +R + + + + L E+E++ +L++ Sbjct: 378 LPESLTLSGHRRSREPEPAGGTVDDKRQEIAEEVFSRGLEPTLADLEREMIVNALEKAGN 437 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 ++ RAAELL ++ R +KK+ I Sbjct: 438 SKTRAAELLRTSFRSLRYKIKKYGI 462 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 465 bits (1198), Expect = e-130, Method: Composition-based stats. Identities = 124/328 (37%), Positives = 187/328 (57%), Gaps = 5/328 (1%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + + ++G+ + L+V + + +AP D PVLI+GE GTGKEL+A L+ S R PF+ Sbjct: 138 SADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKELVARALYLHSPRSDKPFV 197 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 ++NCAA+ + LL+SELFGHE GAFTGA +R G+FE+A GGT+FLDE+ P Q K+L Sbjct: 198 AINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTVFLDEIGDMPPAAQAKML 257 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R+++ ERVGG++ +Q +VR++ ATN DL A+V + FR DLL RL V LPPLR+ Sbjct: 258 RLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFREDLLYRLNSFTVTLPPLRD 317 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI + +F R++K + G A L ++RWPGN+REL+N + +V + Sbjct: 318 RTGDIEPLVSHFVTAANRKLKKNV-RGVDAAALAVLESHRWPGNVRELQNAMRYAVVQAV 376 Query: 242 TSDYPLDDIIIDPFKRRPPE----DAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQ 297 D + P + A+ + R+ ++ LL L+ Sbjct: 377 GEVITPDCLPASLRGAAAPPGDALELTALITSLLRVGATDIYRQVTHTVDRALLTAVLEH 436 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 NQK+AA+ LG++ RA L+ + Sbjct: 437 VHGNQKQAADRLGISRTTLRAKLQTLGL 464 >UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYB5_9BACT Length = 645 Score = 465 bits (1198), Expect = e-130, Method: Composition-based stats. Identities = 121/322 (37%), Positives = 179/322 (55%), Gaps = 22/322 (6%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +LG+++S VL + +AP + VLI+GE GTGKELIA +H +S R + P I++NCA Sbjct: 334 QILGQSDSLKYVLYRAEQVAPTNATVLILGETGTGKELIAFAIHDMSPRKERPMITVNCA 393 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL NL++SELFG E GAFTGA R GRFE A+G TL LDE+ P+ +Q KLLRVI++ Sbjct: 394 ALPGNLIESELFGREKGAFTGADTRRIGRFEVANGSTLCLDEIGELPLELQAKLLRVIQH 453 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ER+G ++V+VR+V TN +L + G FR DL RL + +PPLR+R+ DI Sbjct: 454 NEFERLGSPHTIKVDVRIVATTNRNLEEEIRNGRFRQDLYYRLNVFPITVPPLRQRKEDI 513 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 LM F + R++ + + A + L +Y WPGN+REL++++ER+V Sbjct: 514 PLMVHAFVERYSRKLGKQI-TSIQKEAMKALQDYPWPGNVRELESIIERAVILCPGPVLQ 572 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY---NQK 303 L D + S P +R + E++ + L + ++ + Sbjct: 573 LADKL-----------------EISSPAFSSTVR-TLEETERDQILKILSETRWRIEGKN 614 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AA +LG+ RA + K I Sbjct: 615 GAAAILGIHPSTLRARMHKLGI 636 >UniRef50_C7I4S2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thiomonas intermedia K12 RepID=C7I4S2_THIIN Length = 497 Score = 465 bits (1198), Expect = e-130, Method: Composition-based stats. Identities = 120/325 (36%), Positives = 184/325 (56%), Gaps = 6/325 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 L+ E+ + ++L V A D V+++GE G GKE++A +H S R GPFI++NC Sbjct: 160 SGLIAESAAMQQILTIVRRAAQTDVTVMLLGESGVGKEVMARYVHAQSPRSAGPFIAINC 219 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ E LL++ LFG E GAFTGA + PG+FE+A GGTL LDE+ +Q KLLRV++ Sbjct: 220 AAIPETLLEATLFGFEKGAFTGAGQSAPGKFEQAQGGTLLLDEVTEMAPALQAKLLRVLQ 279 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ER+GG + + ++VRLV +N DL V +G R D+ RL VQ+PPLRER D Sbjct: 280 EREIERLGGRKRIALDVRLVATSNRDLQQAVQQGVLREDVYYRLNVFPVQIPPLRERRDD 339 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I+ +A+ ++ + + P A++ LL +RWPGN+REL NV++R+ Sbjct: 340 ILPLAKAMLVRHAAQFGMTPSPRLDSSAQQALLAHRWPGNVRELDNVMQRAAILSQGGVI 399 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPL------DLREFQMQQEKELLQLSLQQGK 299 D++ P P+ ++ P P DL E++L+ +LQ + Sbjct: 400 SAADLLFPPPAAETPQRVSTPAQPQLTPQAPTPQPFSGDLGSELALNERQLIADALQHSQ 459 Query: 300 YNQKRAAELLGLTYHQFRALLKKHQ 324 +++RAAE LG++ R L+K + Sbjct: 460 GSKQRAAERLGISPRTLRHKLQKLR 484 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 465 bits (1198), Expect = e-130, Method: Composition-based stats. Identities = 118/321 (36%), Positives = 183/321 (57%), Gaps = 4/321 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR-WQGPFISLNC 65 N+L + +++ E + H+A VLI GE GTGKE IA +H S+ G F+++NC Sbjct: 148 NVLSRSPKMVDLFELIGHVAGTASTVLIRGETGTGKEQIARAIHQASANYRTGEFVAVNC 207 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 ALNENLL+SELFGHE G++TGA ++ GRFE A GTLFLDE+ PM +Q KLLRV++ Sbjct: 208 GALNENLLESELFGHEKGSYTGADRKRIGRFELAHKGTLFLDEIGDVPMSMQVKLLRVLQ 267 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ERVGG++P++++VR+V AT+ D+ +V +G FR DL RL + +PPLRER D Sbjct: 268 ERRFERVGGAEPIEIDVRVVAATHQDMEKLVKDGKFREDLYYRLNVVRIDIPPLRERTED 327 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I ++ +F + R + P P + A + L WPGN+R+L+N +ER+ Sbjct: 328 IPVLVSHFCQKFVRVGQKP--PTISPEALDLLTKCPWPGNVRQLENAIERACVTARDGVI 385 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSL-PTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 D+ + +R A L LP L E E+ ++ +L++ + + + Sbjct: 386 RTKDLPPEVGRRPESSAAGKHPFHVDLNRKLPDQLSELTAAFEERYIRRALKRSRGHVGK 445 Query: 305 AAELLGLTYHQFRALLKKHQI 325 A++ GL+ + +++I Sbjct: 446 CAKITGLSRRSITDKIAQYKI 466 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 131/324 (40%), Positives = 190/324 (58%), Gaps = 6/324 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++ E L +LE + +A VLI GE GTGKEL A L+ SSR PF+++NCA Sbjct: 144 EIITEDEKILGILEFLKTVAQSKSSVLIQGESGTGKELFARYLYLHSSRRHMPFVAINCA 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ +NLL+SE+FG E GAFTGA +R G+FE A+GGTL LDE+ +Q KLLRVI+ Sbjct: 204 AIPDNLLESEMFGFEKGAFTGAIQRKVGKFELANGGTLLLDEVTEMTPHLQAKLLRVIQE 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++R+GG PL V+VR++ TNAD+ + E TFR DL RL +++PPLRER+ D+ Sbjct: 264 KEIDRLGGKMPLPVDVRIIATTNADVRKCIEEKTFREDLYYRLNVIPLKIPPLRERKGDV 323 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ YF + + PL P F + L Y WPGN+REL+NV+ER+V G + Sbjct: 324 ELLGSYFLKKYSNLNEKPL-PVFANGTLKRLNAYDWPGNVRELENVIERAVLVCGGNVVL 382 Query: 247 LDDIIIDPFKRRPPEDAIAVS---ETTSLPTLPLDLRE--FQMQQEKELLQLSLQQGKYN 301 + + ++ P S E S +DL + EKEL+ +L + K N Sbjct: 383 PEHLYLEDQGSVSPAAEEKTSCSLEEVSTDISGIDLSRGMTIWEMEKELIFSTLDKVKGN 442 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 + RA+E+LG++ R L+++Q+ Sbjct: 443 KTRASEILGISVRTMRNKLQEYQM 466 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 110/320 (34%), Positives = 170/320 (53%), Gaps = 2/320 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +L+G++ + + + ++ D VLI GE GTGKEL+A +HY S R +++NC Sbjct: 189 HSLIGKSYLMQNIYDLIEKVSQTDSTVLITGETGTGKELVARAIHYNSHRKDYNLVAVNC 248 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL E LL+SELFGH G+FTGA + G+FE AD GT+FLDE+ + Q KLLRV++ Sbjct: 249 AALPETLLESELFGHVKGSFTGAIRDKKGKFELADKGTIFLDEIGELSIPTQVKLLRVLQ 308 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 +ERVG + ++V++R++ ATN D+ ++ +GTFR DL RL ++LP L+ER D Sbjct: 309 ERYIERVGDEKTIKVDIRIIAATNQDILELIEKGTFRKDLFYRLNIISIRLPSLKERTDD 368 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ +F + K + G + A LL Y WPGNIREL+ V+E++V + Sbjct: 369 IPLLVNHFIEKFNIRFKKNIN-GISPNALRKLLAYSWPGNIRELEGVIEKAVLLEESETI 427 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 ++ D ++ + + DL++ E+E Q+ Sbjct: 428 ENIELPTDHSATTNLCLPKPLNAGPDISSYE-DLQKRLDMLEREYFVSVFQKHHGRIGSI 486 Query: 306 AELLGLTYHQFRALLKKHQI 325 A GL +KK + Sbjct: 487 AACTGLNRRTILNKMKKFSL 506 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 112/325 (34%), Positives = 173/325 (53%), Gaps = 3/325 (0%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 M E LLG++ EV +++ + D VL+ GE G+GKEL A +H S R GPF Sbjct: 143 MLEGYGELLGQSKIMQEVFDRIEKVVTADVTVLLQGESGSGKELAAHEIHRRSKRKNGPF 202 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I +NCAA+ E L++SELFGHE G+FTGA +R G+FE A+ GT+ LDE+ + Q KL Sbjct: 203 IVMNCAAVPETLIESELFGHERGSFTGATERRMGKFEMANNGTILLDEIGDMSLSTQSKL 262 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ + ER+GG++ L V+VR++ AT+ DL + EG FR DL R+ +++PPLR Sbjct: 263 LRVLQEQKFERLGGTETLAVDVRIISATHRDLEEEIEEGRFREDLYYRINVVNIKIPPLR 322 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R+ DI L+ F ++ + + A + L Y WPGNIR+LKN +E ++ Sbjct: 323 KRKEDIPLLVNRFIQHFSKKHYKNVV-SISNDAMKKLSAYNWPGNIRQLKNTIESAIVLT 381 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + D+ D + D+ + + EK+ + L++ Sbjct: 382 NNDVLDISDLSEDIIREEKTPDSTKNVHYHL--SFREAKKILIENFEKDFISKKLEECGG 439 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N AE L + + +K Q+ Sbjct: 440 NISHTAEALDMHRQNLQQKIKDLQL 464 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 115/319 (36%), Positives = 173/319 (54%), Gaps = 5/319 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G++ EV +V A VLI GE GTGKELIA +HY S + PF+++NC+ Sbjct: 151 NIMGKSEVMQEVFSRVRAAAASRSTVLIQGESGTGKELIARAIHYNSDQADQPFVTVNCS 210 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E LL+SELFGH GAFTGA + GRFE A G++FLDE+ +Q KLLRV++ Sbjct: 211 ALTETLLESELFGHVKGAFTGAVRDRAGRFEEAHRGSIFLDEIGELSQTIQVKLLRVLQE 270 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ERVG SQ +++R++ AT+ DL ++ +G FR DL RL + LPPLR+R D+ Sbjct: 271 REVERVGDSQTRTIDIRVIVATHRDLNELLAQGVFRQDLYYRLKVFPITLPPLRQRREDL 330 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F + + G A + Y WPGN+REL+N +E + Sbjct: 331 PLLVNHFIAKQNEATGKRV-TGLAPEAMRLVFEYHWPGNVRELENAIEHAFVLTSGEQIQ 389 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 ++D+ P + P + + +P R+ Q ++E L L+ ++N+ A Sbjct: 390 VNDL---PAEIITPRPSPERAREAGVPRTAGS-RQHHEQPDREQLLALLEANQWNKAAVA 445 Query: 307 ELLGLTYHQFRALLKKHQI 325 LG++ +KK I Sbjct: 446 RQLGVSRTAVWKYMKKWGI 464 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 122/323 (37%), Positives = 176/323 (54%), Gaps = 5/323 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + L+G + EV+ + +A VL+ GE GTGKEL+A LH S R PF++LNC Sbjct: 151 EGLVGNSAPIREVVRMIEAVAYSATTVLVTGESGTGKELVARALHARSPRRAQPFVALNC 210 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AL E LL+SELFGH GAFTGAQ+ G F+ ADGGT+FLDE+ P Q +LLRV++ Sbjct: 211 GALTETLLESELFGHVKGAFTGAQRDQKGLFDAADGGTIFLDEIGDIPPATQVRLLRVLQ 270 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GEL+RVG ++ ++V+VR++ AT+ DLP +V G FR DL RL + LP LR+R D Sbjct: 271 EGELKRVGSAESVRVDVRVIAATHRDLPRLVKAGKFREDLFYRLNVINIPLPSLRDRVDD 330 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + L+A +F + + + A E L YRWPGN+REL+N +ER+V Sbjct: 331 VPLLAHHFLRRYAERLGKRV-RALAPDAIELLCGYRWPGNVRELENAIERAVVLCRGEAV 389 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQ----QEKELLQLSLQQGKYN 301 D+ R P A + L + + Q EK ++ ++ N Sbjct: 390 TGGDLPPAVTGRTAPLVREAPAGGDEAVWLTMSYATAKEQSLRRFEKGYVETLMRHCDNN 449 Query: 302 QKRAAELLGLTYHQFRALLKKHQ 324 AA G+ F+ +L+K++ Sbjct: 450 ISAAARKAGMDRSNFKRVLRKYR 472 >UniRef50_A8USY5 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8USY5_9AQUI Length = 349 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 128/325 (39%), Positives = 189/325 (58%), Gaps = 11/325 (3%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + E + +G V + + AP D PVLI+GE GTGKEL A +H S R + F Sbjct: 35 VCEENTDFVGSCERMTRVFDLIRRFAPTDYPVLILGETGTGKELTARAIHEKSPRREKAF 94 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I++NC A+ LL++ELFG+E GAFTGA +R PG+ E+A+GGTLFLDE+ P+ +Q KL Sbjct: 95 IAINCGAIPGELLEAELFGYEKGAFTGAHRRKPGKIEQANGGTLFLDEIGELPLELQVKL 154 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LR +E RVGG++ ++ +VRL+ ATN DL +V +G FR DL RL ++LPPLR Sbjct: 155 LRFLEDYTFSRVGGNETIKADVRLIAATNGDLRELVRKGKFREDLYYRLKVLSIELPPLR 214 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R D +LMA+YF + RE + + GFT+ A E + NY WPGN+REL NV++++V Sbjct: 215 DRGEDKVLMAKYFLEKFKREQEKSI-EGFTDEAIELIENYSWPGNVRELINVMKKAVVMT 273 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 D+ +D K + +L+E + EKEL++ + K Sbjct: 274 DKRFIDAVDLDVDTSKVSKNIGGQRL----------FNLKEHMDKLEKELVEKAFNVSKG 323 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N + A +LG++ L++KH + Sbjct: 324 NISKMASMLGVSRPTVYKLIEKHNL 348 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 124/324 (38%), Positives = 197/324 (60%), Gaps = 9/324 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+++G + + + EQV +A + VLI GE GTGKE++A +H LS R +GPF+++NC Sbjct: 141 DDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQSIHRLSHRNKGPFVAINC 200 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ E LL+SELFG+E GAFTGA+K PGRFE A GGTLFLDE+ P+ +Q KLLRV+ Sbjct: 201 AAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFLDEIGDMPLYLQAKLLRVL 260 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + +ERVGG++ ++V+VR++ AT+ DL +M+ FR DL RL + +PPLRER+ Sbjct: 261 QERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLYFRLNVIPLYVPPLRERKE 320 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D+ + +Y+ + C+ + F+ +A + + +Y WPGNIREL+N+VE V Sbjct: 321 DLYELIQYYMYKFCKRLGKE-PKRFSSQALKKIFDYHWPGNIRELENMVEYIVNLEIGDL 379 Query: 245 YPLDDIII---DPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGK-- 299 + + + K + + + E ++ LP L + + E++L+ +LQ+ Sbjct: 380 VTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYKIN-EVEEQLIIQALQRFGTS 438 Query: 300 -YNQKRAAELLGLTYHQFRALLKK 322 +++AAE LG++ L+K Sbjct: 439 TEGKRKAAEALGISLATLYRKLEK 462 >UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EN62_SORC5 Length = 648 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 128/319 (40%), Positives = 184/319 (57%), Gaps = 8/319 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G +++ +V+ Q+ + VLI GE GTGKELIA+ +HY S R F++ NCA Sbjct: 338 DIIGNSDAMRKVIGQLDKVVDTRVTVLIEGETGTGKELIAAAVHYRSRRRDKLFVAQNCA 397 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E+LL+SELFGH+ G+FTGA + G FE ADGGTLFLDE+ P+ +Q KLLR ++ Sbjct: 398 ALAESLLESELFGHKKGSFTGATEEKKGLFEIADGGTLFLDEITETPLSLQSKLLRALQE 457 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE+ VG + P VNVR+V ATN +L V +G FR DL RL ++LPPLRER DI Sbjct: 458 GEIRPVGATSPKHVNVRIVAATNRNLEDEVAKGRFREDLYYRLKVFPIRLPPLRERRDDI 517 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A +F + EI P GF+++A E ++ Y WPGN+REL+N V+R V + + Sbjct: 518 SLLAAHFLERYADEIGKPCG-GFSQQAMELMVAYDWPGNVRELQNEVQRIVIQLEPGAFG 576 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 +++ P T L+E EK L +L+ N+ AA Sbjct: 577 TPELL-------SPRIRQVEGLVARAGTPKGSLKEMMDAVEKFFLLEALRGHNNNKTNAA 629 Query: 307 ELLGLTYHQFRALLKKHQI 325 + LG+T L+++ I Sbjct: 630 KSLGITREGLHKKLRQYGI 648 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 125/337 (37%), Positives = 186/337 (55%), Gaps = 18/337 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + L+G + + +V + + AP D VL+ GE GTGKEL+A ++ S R + PF+ +NC Sbjct: 144 EALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGKELVARAVYQHSLRGEKPFLIINC 203 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ + LL+SELFG+E GAFTGA R G+ E+A+GGT+FLDE+ P+ +Q KLLR+++ Sbjct: 204 VAIPDTLLESELFGYEKGAFTGATNRRVGKIEQANGGTVFLDEIGDMPLGIQAKLLRLLQ 263 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ++ER+GG QP+ V+VR++ ATN DL A V +G FR DL RL + LPPLRER D Sbjct: 264 EKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFREDLYYRLKVVTLWLPPLRERSED 323 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I +A YF + RE+ +P PG T A L WPGN+REL N V +++ Sbjct: 324 IPPLARYFLARFSREMDMPN-PGITPEALAYLEAQPWPGNVRELGNSVHKALVFSRGGPL 382 Query: 246 PLDDII--------IDPFKRRPPEDAIAVSETTSLPTLPLDLRE---------FQMQQEK 288 D+ + P P D ++ T + L E + Sbjct: 383 GEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELIRRTLSESDGDNVFDSLMDHVGR 442 Query: 289 ELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +++ +L N+ RAA LLGL+ A ++K+ + Sbjct: 443 LVVREALHLTGGNRTRAARLLGLSRPTLLAKIEKYGL 479 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 121/334 (36%), Positives = 182/334 (54%), Gaps = 19/334 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDK-PVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 D L+G + S + + + + A D VLI+GE GTGKEL+A +H S+R + PF +N Sbjct: 142 DKLVGNSASMVNLFKMIKVCADTDAKTVLILGESGTGKELVARAIHNHSARAEAPFAEVN 201 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAA+ E LL+SELFGHE GA+T A KR G FE A+GGT+FLDE+ P +Q K+L+VI Sbjct: 202 CAAIPETLLESELFGHEKGAYTDASKRRKGIFELAEGGTVFLDEIGDMPFSMQAKVLKVI 261 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 E R+G + +Q +VR++ AT+ DLPAMV E FR DL RL + LPPLRER Sbjct: 262 ETKRFRRLGAEEDIQADVRIIAATHQDLPAMVKERRFRGDLFYRLNVMNIPLPPLRERTD 321 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI + +YF ++ E + G + L Y WPGN+REL+N +ER++ + Sbjct: 322 DIPSLVQYFIERLNEEYGRRV-EGVSPETMAYLTGYGWPGNVRELRNAIERTMMLEHSRI 380 Query: 245 YPLDDIIIDPFKRRPPEDAIA-------------VSETTSLPTLPLDLREFQMQQEKELL 291 + + ++ + ++PT + L E E++L+ Sbjct: 381 LTPVFLNAEIKQQYETAQNKSLHVDSHASAQHSFARGHITIPTGGISLEEL----ERQLI 436 Query: 292 QLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 ++ L+ NQ +AA+ L ++ R +KK + Sbjct: 437 RMGLEISGGNQTKAAKYLKMSRDTLRYRMKKFGM 470 >UniRef50_A1ALJ3 Sigma-54 factor, interaction domain-containing protein n=5 Tax=Desulfuromonadales RepID=A1ALJ3_PELPD Length = 517 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 129/326 (39%), Positives = 179/326 (54%), Gaps = 12/326 (3%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + D ++G V+E V +APL+ VL++GE GTGKELIA+ +H S R GP I Sbjct: 188 QGGDEIVGANLGLRHVMEMVRQVAPLNNTVLLLGETGTGKELIANAIHSASPRKDGPLIK 247 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NC A+ E L+DSELFGHE GAFTGA GRFERADGGT+FLDE+ P+ Q +LLR Sbjct: 248 VNCGAIPEQLIDSELFGHEKGAFTGAVTERRGRFERADGGTIFLDEIGELPLQAQVRLLR 307 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E++RVGGS+P+ V++R++ AT+ +L +M+ E FR DL RL + +PPLR+R Sbjct: 308 VLQNHEIDRVGGSRPIPVDIRVIAATHRNLESMIAENRFREDLWFRLNVFPLFIPPLRQR 367 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI + +F Q CRE+ + P A L+ Y WPGN+REL+N+VER + H Sbjct: 368 REDIPGLTRHFISQKCRELGMAAMPDIAPGALVRLMEYAWPGNVRELENLVERELILHRG 427 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY-- 300 D ++ + P A L Q L+ L Sbjct: 428 GTLQFDALMPAARRGNAPVQREAPGVEEGLE---------LDQAISRHLRRVLDLTGGRI 478 Query: 301 -NQKRAAELLGLTYHQFRALLKKHQI 325 + AAELLG+ R L + I Sbjct: 479 HGRGGAAELLGVKPSTLRWRLDRLGI 504 >UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LQ47_HALO1 Length = 665 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 130/354 (36%), Positives = 181/354 (51%), Gaps = 37/354 (10%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 +G + + VL VS + P + VL+ GE G+GKE++A +H S R PFI++NCAA Sbjct: 311 FVGSSPAAETVLRFVSKVGPSEATVLLTGESGSGKEMVARAIHDASRRASAPFIAINCAA 370 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E L++SELFGHE GAFTGA +R GRFE AD GTLFLDE+ P+ Q K LRV+E Sbjct: 371 LTETLIESELFGHERGAFTGASERKAGRFELADKGTLFLDEVGELPLSCQTKFLRVLEEQ 430 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ERVGG + + V+VR+V ATN DLP+MV +G FR DL RL+ +PPLR R SDI Sbjct: 431 VFERVGGGRTIAVDVRVVAATNRDLPSMVRQGRFREDLYYRLSVIHTVVPPLRARTSDIP 490 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 ++AE+F + +++ + GF+ A L + WPGN+REL+N VER+V Sbjct: 491 VLAEHFLARFRKQVARRVA-GFSPEALAALTRHPWPGNVRELRNAVERAVVLGEGPWILP 549 Query: 248 DDIIIDPFKRRP---------PEDAIAVSETTSLPTLPLDLREF---------------- 282 + D A+ V + P + E Sbjct: 550 AHLPPDVLAAGAAPPPPAGLVSAPALPVDPAAAGPGASIGGGELGANAAPGWGEGVSEGG 609 Query: 283 -----------QMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + E+E + +LQ N+ +AA LL + LK + I Sbjct: 610 PGAAGAAGARPLRELEREGIIAALQATGGNKVQAAALLQIDRSTLYKKLKDYDI 663 >UniRef50_B9M2U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=13 Tax=Proteobacteria RepID=B9M2U3_GEOSF Length = 474 Score = 463 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 186/319 (58%), Gaps = 11/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ L+V + ++ D V I GE GTGKEL+A LH +S R GPF+ +NC Sbjct: 146 GIIGKSPQMLQVFSMIRKVSLSDVAVFITGESGTGKELVAKALHNMSLRKNGPFVPINCG 205 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENLL+SE+FG E GAFTGA R G+ E A GT+FLDE+ P +Q KLLR ++ Sbjct: 206 AIPENLLESEMFGTERGAFTGAHARILGKAEYAHKGTMFLDEIGELPGNLQVKLLRFLQE 265 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 L+RVGG + + V+ R++ ATN D+ + EG FR DL R+A + LPPLRER DI Sbjct: 266 KVLQRVGGREDIAVDARIISATNMDIAKAIGEGLFREDLYYRIAVITINLPPLRERGDDI 325 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 ML+A F + E GF+ + + L NY WPGN+REL+N V+R+V + Sbjct: 326 MLLANLFLKRATEEFCKK-TRGFSTSSLKILKNYTWPGNVRELENRVQRAVIMSDSPLIE 384 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 D+ + E+++ + P + L++ + + E+E++ +L + + N +AA Sbjct: 385 PADLGL-------TENSMPLMMP---PMGCVTLKDARDRLEREMIISALGRQEGNIAKAA 434 Query: 307 ELLGLTYHQFRALLKKHQI 325 E+LG++ L+KK+ + Sbjct: 435 EVLGVSRPTLYDLMKKYSL 453 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 463 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 116/318 (36%), Positives = 180/318 (56%), Gaps = 13/318 (4%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 +LG + + ++ +AP D VLI GE GTGKEL+A +HY S R + F+ ++C+A Sbjct: 149 MLGSSPVMQNLFSRMLKVAPTDGTVLITGESGTGKELVARAIHYHSRRRENEFVPVDCSA 208 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L ENLL+SELFGH G+FTGA + G FE A+ GT F DE++ M +Q KLLRVI+ Sbjct: 209 LVENLLESELFGHVKGSFTGALQSKKGLFELANHGTFFFDEISNLSMDIQAKLLRVIQER 268 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E +VGG+ ++V++R++ A+N DL A + E FR DL RL + LPPLRER DI Sbjct: 269 EFTQVGGAVRIKVDLRIMVASNRDLRAAIAENKFREDLFYRLHVIPIHLPPLRERGKDIE 328 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + YF + M R+I P + A + LL+Y WPGN+REL+N +ER++ + Sbjct: 329 ELVNYFVLHMSRKIGRE-APKVSREAMDVLLSYAWPGNVRELENTIERTLILKDDAVIKP 387 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 + + D ++ P + S + L++ E++ ++ L + ++AA Sbjct: 388 EHLPQDIRQQPP--------DLRSFSDKMVSLKDL----ERDYIRFVLSRTNGGIQKAAG 435 Query: 308 LLGLTYHQFRALLKKHQI 325 +LG+ +KK+ + Sbjct: 436 ILGINRKTLSMKMKKYGL 453 >UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GM58_THISH Length = 509 Score = 463 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 128/323 (39%), Positives = 185/323 (57%), Gaps = 7/323 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + +LGE+ + +L + +AP + VLI GE GTGKELIA +H S R QGP I +NC Sbjct: 187 EEILGESAALRRLLADIGRVAPSEATVLITGETGTGKELIARAIHRHSRRSQGPLIKVNC 246 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ L +SE FGHE GAFTGA +R GRF+ ADGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 247 AAITATLQESEFFGHEKGAFTGAAQRRDGRFKLADGGTLFLDEVGEMPLDLQAKLLRVLQ 306 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE E VG + ++V+VR++ AT+ DL MV EG FR DLL RL + PPLRER D Sbjct: 307 EGEFEPVGSGRTVRVDVRVIAATHRDLTQMVREGGFREDLLYRLNVFPLHAPPLRERGED 366 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 ++L+AE A ++ R+ L P + R L + WPGN+REL+NV+ER+ T Sbjct: 367 VVLLAEAIATRLARQEGATLAP-LSPADRARLKAHPWPGNVRELENVIERAWI---TGTD 422 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK-- 303 D +++ + P + + + + +Q E+ ++ +L ++ Sbjct: 423 TPDGRVLNLVRALPGSEVTPRTPGLAADPDAVFTAAEMLQMERSNIERALVSCQWKLSGV 482 Query: 304 -RAAELLGLTYHQFRALLKKHQI 325 AA LLGL + + +K I Sbjct: 483 GGAARLLGLHPNTLASRMKSLGI 505 >UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX45_DESBD Length = 529 Score = 463 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 121/318 (38%), Positives = 177/318 (55%), Gaps = 2/318 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ + LEV + V+ +A VL++GE GTGK LI +H LS R PFI +NCAA Sbjct: 198 IVGKSQAMLEVEQYVAKVAITKATVLLLGESGTGKTLIGRIIHELSDRKTHPFIKVNCAA 257 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + ENLL++ELFG+E GAFTGA PGRFE A GT+FLDE+ P+ +Q KLLRV++ Sbjct: 258 IPENLLEAELFGYEKGAFTGANSTKPGRFEDAHLGTIFLDEIGELPLTLQSKLLRVLQER 317 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ER+G ++ +V+VR++ ATN +L A+V G FR DL RL V +P +RER+ DI Sbjct: 318 EFERIGSNKTRKVDVRIISATNRELEALVGHGLFREDLYYRLNVFPVHVPAVRERKEDIP 377 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + +F +M RE L T A + LL Y WPGN+REL+N+VER V Sbjct: 378 RLLNHFQKEMEREYGRSLT--LTTGALDLLLAYDWPGNVRELENLVERLVILTDDKPVEA 435 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 + + + D + + E+ + +L++ + Q +AA Sbjct: 436 ELVRGFLTPETHRPGPARHAPEPPAHPEQEDYCQPLKETERREVLAALKRNAWIQYKAAR 495 Query: 308 LLGLTYHQFRALLKKHQI 325 L LT Q ++K + Sbjct: 496 ELNLTPRQMGYRVRKFNL 513 >UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GID7_CLOBL Length = 542 Score = 463 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 116/320 (36%), Positives = 188/320 (58%), Gaps = 10/320 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G+++ + A + VLI+GE GTGKEL A +H S+R GPFI +NC Sbjct: 231 DIVGDSSESNNIKSLAKKSANTNSNVLIVGESGTGKELYAHSIHNASNRRLGPFIKINCG 290 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGR-FERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ LL+SELFG+E GAFTGA+K FE A+GGT+FLDE+ PM +Q KLLRVI+ Sbjct: 291 AIPAELLESELFGYEDGAFTGAKKGGKKGKFELANGGTIFLDEIGDMPMCMQVKLLRVIQ 350 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+E+VGG+ +++VR++ ATN +L +V + FR DL RL + +P LRER+ D Sbjct: 351 EREVEKVGGNILKKIDVRIIAATNKNLEKLVEKNKFREDLYYRLNVIRINVPSLRERKED 410 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I+L++++ ++ + + G ++ A+E L NY WPGNIREL+NV+ERS + Sbjct: 411 ILLISDFLVKKVSHRLGI-CIKGISKEAKEYLCNYNWPGNIRELENVIERSANLLDS--- 466 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D +I P P++ + + L++ + EKE++ L++ N+ + Sbjct: 467 ---DFVIKPKHL--PKEILKSYIVKAPTKENKYLKDIISEVEKEVICNCLEKNNGNKNKT 521 Query: 306 AELLGLTYHQFRALLKKHQI 325 +++LG++ + ++ I Sbjct: 522 SKILGISRANLYKKISEYNI 541 >UniRef50_Q0F179 Putative transcriptional regulator, Fis family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F179_9PROT Length = 465 Score = 463 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 129/330 (39%), Positives = 186/330 (56%), Gaps = 13/330 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + + ++ + +A D VLI GE GTGKE++A LH S R F+++N AA Sbjct: 131 IIGRSPAMQQMFRTLGRVASSDLTVLITGESGTGKEMVAKTLHERSQRADKAFVAINTAA 190 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + +LL+SELFGHE G+FTGA K GRF +ADGGTLFLDE+ P+ +Q KLLRV+E G Sbjct: 191 IPADLLESELFGHEKGSFTGADKMREGRFVQADGGTLFLDEIGDMPLALQAKLLRVLEEG 250 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ++RVGGS+ VNVRL+ AT+ +L + +G FR DL RL VQ+PPLR+R DI Sbjct: 251 RVQRVGGSESKVVNVRLLAATHQNLNTKIAKGEFREDLYYRLNVIPVQIPPLRDRRDDIP 310 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +A + Q +E+ + P + A + L + WPGN+RELKNV+ R + L Sbjct: 311 ELANFLLEQAVKELGMEQ-PILLDDAMDLLSRHDWPGNVRELKNVMRRLAVLTPGATITL 369 Query: 248 DDIII---DPFKRRPPEDAIAVSETTSLPTLPLDL---------REFQMQQEKELLQLSL 295 D+ + + E+ +A + T L + Q E LL L+L Sbjct: 370 TDVALALGNVDNHTGEEETLADAVTRCTRQYLHQLGYASATNLHQHLLEQIEPPLLVLAL 429 Query: 296 QQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +Q NQ + +E+LGL + R LL K+ I Sbjct: 430 EQCNGNQLKVSEMLGLNRNTVRKLLNKYNI 459 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 463 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 126/328 (38%), Positives = 175/328 (53%), Gaps = 10/328 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +G + + +V ++ A VL+ GE GTGKEL A +H S R GPF+ L+CA Sbjct: 139 GFIGRSRAMADVQAVLAKAAAGTATVLLRGESGTGKELAAKAVHDASPRRDGPFVKLHCA 198 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL + LL+SELFG+E GAFTGA R PGR E A GGTLFLDE+ VQ KLLRVI+ Sbjct: 199 ALPDTLLESELFGYEKGAFTGAATRKPGRVELAHGGTLFLDEVGDISPAVQVKLLRVIQE 258 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ELER+GG+Q ++V+VR V AT+ L V EG FR DL RL V +P LRER DI Sbjct: 259 RELERLGGTQTVKVDVRFVAATHQPLEERVKEGRFREDLFYRLNVVPVWIPALRERPDDI 318 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY- 245 +A +F + P F T+ L WPGN+R+L+N +ER V T Sbjct: 319 EPLALHFLEVHAKTNGRPPFTLMTDG-LAALRAQPWPGNVRQLQNFLERLVVLSDTQVIG 377 Query: 246 ---PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPL-----DLREFQMQQEKELLQLSLQQ 297 L ++ P P A PT+P+ L + + E++ + +L++ Sbjct: 378 GREVLQELARQPGLAPAPFAATPSVSALEAPTVPVTDSARTLESQRKEMERQAMADALKR 437 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 N+ AA LLG++ L+++ + Sbjct: 438 AGDNRTLAARLLGISRRTLYNKLEEYGL 465 >UniRef50_A0L4D6 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L4D6_MAGSM Length = 353 Score = 463 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 111/343 (32%), Positives = 173/343 (50%), Gaps = 25/343 (7%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G A + ++ + + +A D VLI GE GTGKELI +H S R GP I++NC Sbjct: 2 NGIIGSAPAMRKLFKLIERVAAADSTVLIHGESGTGKELICRAIHNTSPRHNGPLIAVNC 61 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ E+LL+SELFGH G+FTGA + PG+F A+ GT+FLDE+ +Q K+LRV++ Sbjct: 62 GAIPEDLLESELFGHAKGSFTGAVRDRPGKFVTANNGTIFLDEIGDMSPKLQVKMLRVLQ 121 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 +E VG + ++VNVR++ AT+ +L V EG FR DL RL +Q+PPLR+R D Sbjct: 122 ERIVEPVGALRSVEVNVRVIAATHKNLSKEVEEGRFREDLFYRLNVVPIQVPPLRDRIED 181 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + + E+F + P + Y W GN+REL+N++ER + + Sbjct: 182 VSSLVEHFMEKCAARSNCPPVK-IGAQVMSIFQRYSWKGNVRELENLMERLIVLADD-EV 239 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPL-----------------------DLREF 282 LDD+ + + A E + + D Sbjct: 240 TLDDLPENMLDTSNHTEPRAQEERIPVQAFRVAYNDDDEDEGDGEMVLDDRESVTDFNHQ 299 Query: 283 QMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 Q E +L+ +L + +N+ +AA+LL L +KK + Sbjct: 300 VEQYENQLILNALNRTGWNKNKAAQLLKLNRTTLVEKIKKKGL 342 >UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC6_9SPHI Length = 646 Score = 463 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 115/328 (35%), Positives = 179/328 (54%), Gaps = 17/328 (5%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + ++G+++ +V ++ +A D VLI+GE GTGKE +A +H LS R P Sbjct: 327 LESDFHGIIGQSSLLKDVFRKIQLVAADDTSVLILGESGTGKERVAHTIHKLSPRKSKPM 386 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 +++NCAAL L++SELFGHE GAFTGA + G+FE+ADGG++FLDE+ P+ Q KL Sbjct: 387 VTVNCAALPLTLIESELFGHEKGAFTGANDKRIGKFEQADGGSIFLDEIGELPLEAQVKL 446 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E+ER+GG+ ++NVR++ ATN +L V EG FR DL RL ++LP LR Sbjct: 447 LRVLQEKEIERLGGNGTKKINVRIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELPSLR 506 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R+ DI L++ +F + + G + + E L Y WPGNIREL++++ERSV Sbjct: 507 QRKEDIPLLSHHFIKKYS-KNASAQIGGVSAASMEELQQYDWPGNIRELEHLIERSVLLS 565 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + ++A S + + + E++ + L+ K Sbjct: 566 KEEEITT-------IIVPTTTPSLAGSNSGEFRI------KTMEEMERDHILSILKMCKG 612 Query: 301 NQ---KRAAELLGLTYHQFRALLKKHQI 325 AAE+L + + +KK I Sbjct: 613 KVFGPGGAAEILNMPSTTLNSKIKKLGI 640 >UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3 Tax=Geobacillus RepID=A4IRU9_GEOTN Length = 486 Score = 463 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 123/319 (38%), Positives = 180/319 (56%), Gaps = 12/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ +V+ ++ +APLD VLI GE G GKE+IA+ + SSR FI +NCA Sbjct: 171 GIIGDSEEIRDVIYLINKIAPLDVTVLITGESGVGKEVIANEIFQKSSRKNKQFIKVNCA 230 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ NLL+SELFG+E GAFTGA K G F+ ADGGT+FLDE+ P+ +Q KLLR ++ Sbjct: 231 AIPTNLLESELFGYEKGAFTGADKAKKGLFQLADGGTIFLDEIGDIPLEIQPKLLRALQQ 290 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ VGG+Q +++VR++ ATN DL V EG FR DL RL +++PPLRER+ DI Sbjct: 291 KEVVPVGGTQIQKLDVRIIAATNKDLSQQVKEGKFRKDLYYRLNVFPIEIPPLRERKRDI 350 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + EYF Q ++ + + A L+NY WPGN+REL+N++ER + Sbjct: 351 YALGEYFLKQYNKKYGKSVV--LSSEAYSLLMNYDWPGNVRELQNIIERLIIISDDQTVI 408 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 D I E + + + L+E + EKE+L L+ ++AA Sbjct: 409 NKDQI---------EKIMFPNTMLDITKSEKGLKEIIQEIEKEILIDVLKNT-GTTRKAA 458 Query: 307 ELLGLTYHQFRALLKKHQI 325 + L + LKK+ I Sbjct: 459 KKLKIDQSTLVKKLKKYGI 477 >UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphaproteobacteria RepID=NIFA_RHISN Length = 594 Score = 463 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 136/342 (39%), Positives = 186/342 (54%), Gaps = 24/342 (7%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++GE+ + +V+E V +A + VL+ GE GTGKE A +H LS R + PF+ LNC Sbjct: 250 DWIVGESPALRQVVESVKVVAQTNSAVLLRGESGTGKEFFAKAIHELSPRRKKPFVKLNC 309 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL+ +L+SELFGHE GAFTGA + GRFE ADGGTL LDE+ Q KLLRV++ Sbjct: 310 AALSAGVLESELFGHEKGAFTGAISQRAGRFELADGGTLLLDEIGEISPAFQAKLLRVLQ 369 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GELERVGG++ L+V+VRL+CATN DL V EG FRADL R+ + LPPLRER D Sbjct: 370 EGELERVGGTKTLKVDVRLICATNKDLETAVAEGEFRADLYYRINVVPLFLPPLRERNGD 429 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I +A+ F + RE L FT A E L ++PGN+REL+N V R+ ++ Sbjct: 430 IPRLAKVFLDRFNRENNRNL--EFTPAALEILSRCKFPGNVRELENCVRRTATLARSATI 487 Query: 246 PLDDIIIDPFK----------------------RRPPEDAIAVSETTSLPTLPLDLREFQ 283 D + + + P P L Sbjct: 488 VPSDFSCQNDQCFSSMLGKTADRPLGSHSLNGLAMSKRLPVESPASLGYPAGPGGLTVAP 547 Query: 284 MQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 ++ELL ++++ + Q +AA +LGLT Q L++H I Sbjct: 548 HLSDRELLISAMEKAGWVQAKAARILGLTPRQVGYALRRHHI 589 >UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator n=4 Tax=Vibrionaceae RepID=Q1ZUC7_PHOAS Length = 717 Score = 463 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 118/330 (35%), Positives = 176/330 (53%), Gaps = 11/330 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+++ ++ +VLEQV+ +A D VLI+GE GTGKELIA +H LS R + + +NC Sbjct: 380 DDIISQSEVMNKVLEQVALVASCDSTVLILGESGTGKELIARAIHKLSLRSKTDMVKMNC 439 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ L +SELFGHE GAFTGA + GRFE+A GTLFLDE+ P+ +Q KLLR ++ Sbjct: 440 AAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQPKLLRALQ 499 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ERVG + + V+VR+V ATN DL V E FR DL RL +Q+PPLRER D Sbjct: 500 ENEIERVGKNALISVDVRIVVATNVDLLRRVEEKKFRNDLYYRLNVFPIQIPPLRERAED 559 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ ++F ++ +++ + + + WPGN+REL+N VERSV + Sbjct: 560 IPLLVKHFTRELAKKMGKTI-TAIAAEDLAVMSVFPWPGNVRELRNFVERSVILTRGNVL 618 Query: 246 --PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELL-----QLSLQQG 298 P+ ++ P + + + + + K ++ +L+ Sbjct: 619 NVPVHELKAVSHSACVPTEKVPPVNPEAAGVINTPEPAVKGDVVKPIIDKADVIKALKAC 678 Query: 299 KYNQK---RAAELLGLTYHQFRALLKKHQI 325 AA LGL + ++K I Sbjct: 679 HGVVAGPNGAANQLGLKRTTLLSRMQKMGI 708 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 115/329 (34%), Positives = 173/329 (52%), Gaps = 11/329 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N+ + V+E +AP VLI GE GTGKEL+A+ +H S R P I++NC Sbjct: 266 NIFSVSPKMEHVIELAKQVAPTKATVLINGESGTGKELLANAIHQHSDRKDAPLITINCG 325 Query: 67 ALNENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ ENL +SE FG+ +GAFTGA+K PG FE ADGGTLFLDE+ P+ +Q KLLR ++ Sbjct: 326 AIPENLAESEFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEIGDLPLNMQAKLLRALQ 385 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 G RVGG +P+ V+VR++ ATN +L +V FR DL R+ ++LPPLRE+ D Sbjct: 386 EGSFYRVGGIEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRINVANLELPPLREKTED 445 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 IM + + F + + + + +TL Y WPGN+RELKNV+ER V Sbjct: 446 IMPLTKRFIDHFSQVHGIEITE-IEQAVMDTLEEYHWPGNVRELKNVIERLVIFSTQGKI 504 Query: 246 PLDDII--IDPFKRRPPEDAIAVSETTSLP-------TLPLDLREFQMQQEKELLQLSLQ 296 + + + P + +D + E + + + E++ + SL+ Sbjct: 505 SIKALPSYLHPGPKFGSQDQQQLHEQLHRQHSQDDNFSNKSNSESKIDELERKTILDSLK 564 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + +N+ + A L + +K I Sbjct: 565 KHSFNKAKVARELNIPRSTLYYRMKVLNI 593 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 117/323 (36%), Positives = 185/323 (57%), Gaps = 7/323 (2%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 E + ++G + +E+ Q+ +A + V+I+GE GTGKEL+A +HY S R PF+ Sbjct: 134 EKQIEIIGNSPKIVELKRQIEKVAKTNAWVMILGENGTGKELVAKSIHYQSPRKDYPFVD 193 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAA+ + L ++E FG+E GAFT A R G+ E AD GTLFLDE+A + Q KLLR Sbjct: 194 INCAAIPDELFEAEFFGYEKGAFTNAFTRKIGKLELADKGTLFLDEVADMSLSSQAKLLR 253 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V+E + R+G + + V++R++ ATN D+ V +GTFR DL RL+ + +PPLRER Sbjct: 254 VLEEKQFSRLGSNTKITVDLRVISATNKDIQKEVEKGTFRQDLAFRLSVIPIYVPPLRER 313 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 E DI+L+A YF + E P ++ + T LNY WPGN+RELKN++ER V + Sbjct: 314 EEDILLLANYFLRKFSVE-NKVEPPILSDEVKNTFLNYNWPGNVRELKNLMERLVILNSE 372 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 S D+ + + + S+P L++ + + EK++++ +L+ N Sbjct: 373 SIIYNKDLPPHML------GNVKLEKEESIPITIRPLKDAKEELEKQMIKKALKVYNNNL 426 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 K A+ L + +K++ + Sbjct: 427 KEIAKALDIDLSSLYRKIKQYNL 449 >UniRef50_P17899 Transcriptional regulatory protein flbD n=24 Tax=Alphaproteobacteria RepID=FLBD_CAUCR Length = 455 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 123/329 (37%), Positives = 194/329 (58%), Gaps = 7/329 (2%) Query: 1 MAEYKDN---LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ 57 +A D+ ++ + +V++ +AP + +LI GE G+GKE++A +H S R + Sbjct: 110 LAAVTDDEKPMVVRDPAMEQVIKLADQVAPSEASILITGESGSGKEVMARYVHGKSRRAK 169 Query: 58 GPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQ 117 PFIS+NCAA+ ENLL+SELFGHE GAFTGA R G+FE ADGGTL LDE++ + +Q Sbjct: 170 APFISVNCAAIPENLLESELFGHEKGAFTGAMARRIGKFEEADGGTLLLDEISEMDVRLQ 229 Query: 118 EKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLP 177 KLLR I+ E++RVGGS+P++VN+R++ +N DL V +GTFR DLL RL ++LP Sbjct: 230 AKLLRAIQEREIDRVGGSKPVKVNIRILATSNRDLAQAVKDGTFREDLLYRLNVVNLRLP 289 Query: 178 PLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 PLRER +D++ + E+F + + P + A+ L+ +RWPGN+REL+N + R+V Sbjct: 290 PLRERPADVISLCEFFVKKYSAANGIEEKP-ISAEAKRRLIAHRWPGNVRELENAMHRAV 348 Query: 238 YRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLD---LREFQMQQEKELLQLS 294 + I + + P +AV+ + + + E++L+ + Sbjct: 349 LLSAGPEIEEFAIRLPDGQPMAPAPDVAVARGAQMAADAASRAFVGSTVAEVEQQLIIDT 408 Query: 295 LQQGKYNQKRAAELLGLTYHQFRALLKKH 323 L+ N+ AA +LG++ R LK++ Sbjct: 409 LEHCLGNRTHAANILGISIRTLRNKLKEY 437 >UniRef50_C8WE21 Transcriptional regulator, NifA, Fis Family n=4 Tax=Alphaproteobacteria RepID=C8WE21_ZYMMN Length = 568 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 133/351 (37%), Positives = 189/351 (53%), Gaps = 35/351 (9%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ +LE+++ +A + VL+ GE GTGKEL A +H S R PFI LNCAA Sbjct: 215 IIGDSPIIRSILEKINLIAKNNVTVLLRGESGTGKELFAQAIHQASPRKGLPFIKLNCAA 274 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E++L+SELFGHE GAFTGA + GRFE ADGGTLFLDE+ Q KLLRV++ G Sbjct: 275 LPESVLESELFGHEKGAFTGAAQMRKGRFELADGGTLFLDEIGEISPNFQAKLLRVLQEG 334 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG++ L+VNVR++ ATN +L V+ G FRADL RL+ + LPPLRE SDI Sbjct: 335 EFERVGGTKTLKVNVRVIAATNVNLEEAVSRGNFRADLYYRLSVIPIFLPPLREHPSDIP 394 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A+ F E K L + A + L + +PGNIREL+N + R+ ++ Sbjct: 395 LLAKEFLRHFNLENKTHLT--IDQNALDVLSHCYFPGNIRELENCIRRTATLARNTEITA 452 Query: 248 DDIIID---------------------------------PFKRRPPEDAIAVSETTSLPT 274 +D P + + A S+ T L Sbjct: 453 EDFTCYNDNCLSSIFWHREEEKTPHVCKNHGSEGEISECPSAQHCQAASNAESDKTDLAF 512 Query: 275 LPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + + + +KE L +++Q + Q +AA +LG+T Q L+K+ I Sbjct: 513 PKEKTTQSEFRSQKEQLIDAMEQAGWVQAKAARILGMTPRQIGYALRKNGI 563 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 124/317 (39%), Positives = 176/317 (55%), Gaps = 5/317 (1%) Query: 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 LG + + + E ++ +AP VL+ GE GTGKE +A +H S R PF+ +NC AL Sbjct: 157 LGTSAAMQRIAELIAKIAPTRTTVLLTGESGTGKERVARAIHDQSDRAARPFLVVNCGAL 216 Query: 69 NENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 E L++SELFGHE G+FTGA R G F ADGGTL LDE+ P +Q KLLRV++ + Sbjct: 217 PEALMESELFGHEKGSFTGAGARSMGLFREADGGTLLLDEIGELPAALQVKLLRVLQERK 276 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 + VG + + V+VR++ ATN D+ A V +G FR DL RL ++LPPLRER DI Sbjct: 277 VRPVGAAAEIAVDVRVLAATNRDVEAEVRQGRFRQDLYYRLNVIRIELPPLRERPGDISR 336 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLD 248 +AE F + E+ + G T A L Y +PGN+REL+N++ER+V G L Sbjct: 337 LAERFLRRFAAELGKDV-RGLTTDAVRALDAYSFPGNVRELENMMERAVALAGGPTIGLG 395 Query: 249 DIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAEL 308 D+ A LP L E + E+ L+ +L++ +K AA+L Sbjct: 396 DLPSAVAGL----SASPAPLLAQLPPEGCALDEVIGEVERRLILQALERTGGVRKAAAKL 451 Query: 309 LGLTYHQFRALLKKHQI 325 LG+++ R L KH + Sbjct: 452 LGVSFRSLRYRLAKHAL 468 >UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Aquificaceae RepID=B4U6M7_HYDS0 Length = 519 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 117/324 (36%), Positives = 181/324 (55%), Gaps = 24/324 (7%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + D + ++ +F +VL+ V + + VLI GE G GK L+A +H LS R PF+ Sbjct: 219 CDKLDYIFTKSPTFQKVLDLVKSCSEHNVNVLIEGETGIGKSLLAKYIHLLSPRRDAPFV 278 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NCAA+ ENLL++ELFG+ GAFTGA K PG+ E ADGGTLFLDE+ P+ +Q K+L Sbjct: 279 KVNCAAIPENLLEAELFGYVKGAFTGATKDKPGKAEIADGGTLFLDEIGDMPLSLQAKIL 338 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 ++E E ER+G + P + N R++ +TN D+ ++ +G FR DL RL+ + LPPLRE Sbjct: 339 HLVEEKEFERLGSNTPRKTNTRIIASTNKDIKELMRQGRFREDLYYRLSVVNIYLPPLRE 398 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R+ DI L+ F + + + + A + LL Y +PGNIREL++++E++V Sbjct: 399 RKEDIPLLINNFIEKYSKLYSKRV-KSISGDAIKMLLGYDFPGNIRELEHIIEKAVITCR 457 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 S ++DI +D + Q+EKE ++ L++ YN Sbjct: 458 GSIINIEDISLDFQSNNHKQ-----------------------QEEKERIKAVLEKVNYN 494 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 + AA++LG+ LK+ I Sbjct: 495 KSLAAKMLGIHRTTLWRKLKELGI 518 >UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDL8_9DELT Length = 590 Score = 462 bits (1191), Expect = e-129, Method: Composition-based stats. Identities = 126/326 (38%), Positives = 185/326 (56%), Gaps = 12/326 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++GE+ + +V V A D VLI GE GTGKELIA +H S R + F+ ++C Sbjct: 263 NQIVGESRAMRQVYAIVRKAAGTDATVLITGESGTGKELIARAVHVNSPRREQAFVKVDC 322 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 L E L+++ELFGHE GAFTGA + PG+FE ADGGTLF+DE+ P+ +Q KLLRV++ Sbjct: 323 TTLPEALIENELFGHERGAFTGAHRTAPGKFEVADGGTLFIDEIGELPLTLQGKLLRVLQ 382 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES- 184 E ERVGG+ ++ ++R++CAT+ DLPAMV+ G FR DL R+ ++LPPLR+R S Sbjct: 383 DREFERVGGTTTIRTDIRVICATHRDLPAMVDAGAFREDLYYRVRVVPIELPPLRDRGSA 442 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D + + E+F + R P+ T+ A+ LL + +PGNIREL+N +E +V Sbjct: 443 DRLRLIEHFVDRYGRRHGRPIHR-VTKAAQARLLEHDFPGNIRELENCIESAVVLSDEGT 501 Query: 245 YPLDDIIIDPFKRR-------PPEDAIAVSETTSLPTLPLDLRE---FQMQQEKELLQLS 294 +DD+ + P K + S S P L L L + E+ ++ Sbjct: 502 IDVDDLPLAPRKAKRGRTQQGSVPTETGQSSGHSGPNLGLQLGDPTLSLAAIERAHIEAV 561 Query: 295 LQQGKYNQKRAAELLGLTYHQFRALL 320 +Q + NQ AA LG+ + L Sbjct: 562 VQACEGNQSEAARRLGIGRNTLARKL 587 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 462 bits (1191), Expect = e-129, Method: Composition-based stats. Identities = 114/322 (35%), Positives = 181/322 (56%), Gaps = 16/322 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G++++ + + VLI GE GTGKELIA +H SSR PF+++NC Sbjct: 339 DEMIGDSDAMKKTRHMAERASRSLSTVLIQGESGTGKELIAQGIHNASSRHGQPFVAVNC 398 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ E LL+SELFG+E G+FTGA+K PG+ E A+GGTLFLDE+ P+ +Q KLLR++ Sbjct: 399 AAITETLLESELFGYEEGSFTGAKKGGQPGKVEMANGGTLFLDEIGDMPLQMQVKLLRML 458 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + + RVG S+ + ++VR++ AT+ +L V EG FR DL RL + +PPLRER Sbjct: 459 QERRICRVGSSEEISIDVRIIAATHQNLKQAVQEGCFRKDLYYRLNVLPITIPPLRERMD 518 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D+ +A++ ++ + +Y WPGNIREL+NV+ER++ D Sbjct: 519 DLPALAKFLVTKLSGRFGKEPV-AISSLFMRACQSYDWPGNIRELENVIERAMNMVDDGD 577 Query: 245 -YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + I +DP + + ++P L+E E E++ +L+ + N Sbjct: 578 ALTAEMIDLDP---------VELPADHAIPDGVRPLKE----VEMEMVVRALEMSRGNIV 624 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 A+ LLG++ + +K++ I Sbjct: 625 HASSLLGISRNTIYRKIKEYDI 646 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 564 e-159 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 553 e-156 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 547 e-154 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 545 e-154 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 543 e-153 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 542 e-153 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 535 e-151 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 535 e-151 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 535 e-150 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 533 e-150 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 532 e-150 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 532 e-150 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 532 e-150 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 532 e-150 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 532 e-150 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 531 e-150 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 531 e-149 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 531 e-149 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 530 e-149 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 530 e-149 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 529 e-149 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 528 e-149 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 528 e-148 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 528 e-148 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 528 e-148 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 527 e-148 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 527 e-148 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 527 e-148 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 526 e-148 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 526 e-148 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 526 e-148 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 526 e-148 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 525 e-147 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 525 e-147 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 525 e-147 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 524 e-147 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 524 e-147 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 523 e-147 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 523 e-147 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 523 e-147 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 523 e-147 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 523 e-147 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 522 e-147 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 522 e-147 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 521 e-146 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 521 e-146 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 521 e-146 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 521 e-146 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 520 e-146 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 520 e-146 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 520 e-146 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 520 e-146 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 520 e-146 UniRef50_Q6ARB9 Probable two-component system response regulator... 520 e-146 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 518 e-146 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 518 e-146 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 518 e-146 UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis ... 518 e-146 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 518 e-145 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 518 e-145 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 518 e-145 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 518 e-145 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional... 516 e-145 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 516 e-145 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 516 e-145 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 516 e-145 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 516 e-145 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 516 e-145 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 516 e-145 UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional... 516 e-145 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 515 e-145 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 515 e-145 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 515 e-145 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 515 e-144 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 515 e-144 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 515 e-144 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 515 e-144 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 514 e-144 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 513 e-144 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 513 e-144 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 513 e-144 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 512 e-144 UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily... 512 e-144 UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 ... 512 e-144 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 512 e-144 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 512 e-144 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 511 e-144 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 511 e-143 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 511 e-143 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 511 e-143 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 511 e-143 UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionell... 510 e-143 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 510 e-143 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 510 e-143 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 510 e-143 UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax... 510 e-143 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 510 e-143 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 510 e-143 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 510 e-143 UniRef50_B8DLL1 Sigma54 specific transcriptional regulator, Fis ... 510 e-143 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 510 e-143 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 509 e-143 UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fi... 509 e-143 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 509 e-143 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 509 e-143 UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovib... 508 e-143 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 508 e-143 UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putativ... 508 e-142 UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyad... 508 e-142 UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1... 508 e-142 UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis f... 508 e-142 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 508 e-142 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 508 e-142 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 508 e-142 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 508 e-142 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 508 e-142 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 507 e-142 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 507 e-142 UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candida... 507 e-142 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 507 e-142 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 507 e-142 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 507 e-142 UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis ... 507 e-142 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 506 e-142 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 506 e-142 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 506 e-142 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 506 e-142 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 506 e-142 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 506 e-142 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 506 e-142 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 506 e-142 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 506 e-142 UniRef50_B9M6T3 Sigma54 specific transcriptional regulator, Fis ... 506 e-142 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 506 e-142 UniRef50_Q3A203 Two component signal transduction response regul... 505 e-142 UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein ... 505 e-142 UniRef50_C9YE96 Transcriptional regulatory protein xylR n=1 Tax=... 505 e-142 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 505 e-142 UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Ca... 505 e-142 UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis F... 505 e-141 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 505 e-141 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 505 e-141 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 505 e-141 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 505 e-141 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 505 e-141 UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidat... 504 e-141 UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteob... 504 e-141 UniRef50_A4VMJ3 Transcriptional regulator FleQ n=69 Tax=Gammapro... 504 e-141 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 504 e-141 UniRef50_D2L1Y0 Two component, sigma54 specific, transcriptional... 504 e-141 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 504 e-141 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 504 e-141 UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n... 503 e-141 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 503 e-141 UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator ... 503 e-141 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 503 e-141 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 503 e-141 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 503 e-141 UniRef50_P19323 Formate hydrogenlyase transcriptional activator ... 503 e-141 UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional... 503 e-141 UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pe... 502 e-141 UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis F... 502 e-141 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 502 e-141 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 502 e-141 UniRef50_A0L4D6 Sigma54 specific transcriptional regulator, Fis ... 502 e-141 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 502 e-141 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 501 e-140 UniRef50_Q1MPA8 Response regulator containing CheY-like receiver... 501 e-140 UniRef50_B8J0D0 Sigma54 specific transcriptional regulator, Fis ... 501 e-140 UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis F... 501 e-140 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 501 e-140 UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis... 501 e-140 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 500 e-140 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 500 e-140 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 500 e-140 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 500 e-140 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 500 e-140 UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis F... 500 e-140 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 500 e-140 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 499 e-140 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 499 e-140 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 499 e-140 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 499 e-140 UniRef50_C4XJ05 Fis family transcriptional regulator n=2 Tax=Des... 498 e-140 UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regula... 498 e-140 UniRef50_C6HWP3 Sigma54 specific transcriptional regulator, Fis ... 498 e-139 UniRef50_B3E653 PAS modulated sigma54 specific transcriptional r... 498 e-139 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 498 e-139 UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional r... 498 e-139 UniRef50_A6G018 Two component, sigma54 specific, transcriptional... 498 e-139 UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=De... 498 e-139 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 498 e-139 UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcr... 498 e-139 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 498 e-139 UniRef50_A8V246 Two component, sigma54 specific, transcriptional... 497 e-139 UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fi... 497 e-139 UniRef50_P26047 Signal-transduction and transcriptional-control ... 497 e-139 UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator ... 497 e-139 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 497 e-139 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 497 e-139 UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis ... 496 e-139 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 496 e-139 UniRef50_P40734 Formate hydrogenlyase transcriptional activator ... 496 e-139 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 496 e-139 UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis ... 496 e-139 UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional... 496 e-139 UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis ... 496 e-139 UniRef50_Q086E2 Two component, sigma54 specific, transcriptional... 496 e-139 UniRef50_C7LP58 Two component, sigma54 specific, transcriptional... 496 e-139 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 496 e-139 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 496 e-139 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 496 e-139 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 496 e-139 UniRef50_Q3A103 Two component, sigma54 specific, transcriptional... 496 e-139 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 495 e-139 UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-ty... 495 e-139 UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional r... 495 e-139 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 495 e-139 UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 495 e-139 UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with ... 495 e-139 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 495 e-139 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 495 e-138 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 495 e-138 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 495 e-138 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 495 e-138 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 495 e-138 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 495 e-138 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 494 e-138 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 494 e-138 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 494 e-138 UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis F... 494 e-138 UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis ... 494 e-138 UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis ... 494 e-138 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 494 e-138 UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis F... 493 e-138 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 493 e-138 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 493 e-138 UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis ... 493 e-138 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 493 e-138 UniRef50_C6NRF1 Sigma54 specific transcriptional regulator, Fis ... 493 e-138 UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis F... 493 e-138 UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis F... 493 e-138 UniRef50_Q46PB6 Helix-turn-helix, Fis-type n=7 Tax=Burkholderiac... 493 e-138 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 493 e-138 UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 493 e-138 UniRef50_B2A661 PAS modulated sigma54 specific transcriptional r... 493 e-138 UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Cl... 493 e-138 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 493 e-138 Sequences not found previously or not previously below threshold: >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 120/322 (37%), Positives = 180/322 (55%), Gaps = 5/322 (1%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +N +G++ V E + +A D VLI GE GTGKELIA +HY S R P + + Sbjct: 144 RFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELIARAIHYNSPRRDDPMVII 203 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NC A+ E LL+SELFGHE GAFTGA K GRFE A+GGT+FLDE+ +Q KLLRV Sbjct: 204 NCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIFLDEIGDMSPNLQVKLLRV 263 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 I+ ER+G ++ + V++R++ ATN DL V + FR DL RL +++PPLR+R+ Sbjct: 264 IQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYYRLNVIPIEVPPLRDRK 323 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 SDI L+ ++F ++ E + P+ ++ A L+ + WPGN+REL+NVVER + Sbjct: 324 SDIPLLIDFFINKLAAEKERPV-KRISQAAMNALMGHHWPGNVRELENVVERVLILSSGD 382 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 +D+ E LP+ + + EK L+ +L++ + + Sbjct: 383 TIDKEDLPATILGLDSKEPE----AGLKLPSGGIRFDHAVEEYEKNLIVQALEEANWVKT 438 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA+LL + +K+ I Sbjct: 439 QAAKLLHINRTTLVEKMKRKNI 460 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 553 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 126/325 (38%), Positives = 182/325 (56%), Gaps = 4/325 (1%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 +A L+G + + EV + + +A D VLI GE GTGKEL+A +HY S R PF Sbjct: 132 IAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNSPRQGKPF 191 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + ++C A+ ENLL+SELFGHE GAFTGA R G+FE ADGGT+FLDE+ +Q KL Sbjct: 192 VKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDISPALQAKL 251 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LR ++ ERVGG++ +V+VR++ ATN DL V G FR DL RL ++LPPLR Sbjct: 252 LRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLR 311 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DIML+ +YF R+ + G T + LL Y WPGN+REL+NV ER+V Sbjct: 312 ERKEDIMLLVDYFVSLSNRKFGKQV-TGLTRSVADILLQYNWPGNVRELRNVCERAVLMA 370 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + + + + + + L L+E + E+ + +L++ + Sbjct: 371 RGNVITPESLPEYLLRAVRGRT---EAWHPAEDRGVLPLKEMVAEMERSAILRALEEYRG 427 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N+ A LG++ A +K+ I Sbjct: 428 NKTAVARALGMSRTTLYAKMKELGI 452 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 547 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 126/325 (38%), Positives = 187/325 (57%), Gaps = 8/325 (2%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + + ++G + + +V + +A + VL+ GE GTGKE+ A +H LSSR PF Sbjct: 136 LNKKYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSIHQLSSRRDKPF 195 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + +NCAAL E+LL+SELFGHE GAFTGA R GRFE A+ GTLFLDE+ P+ +Q KL Sbjct: 196 VPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEITEMPLSMQVKL 255 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E ERVGG+ ++++VR++ ATN D + +GTFR DL RL + LPPLR Sbjct: 256 LRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLNVLPIHLPPLR 315 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI L+A +F + + A L++Y WPGNIREL+NV+ERS+ Sbjct: 316 ERTEDIPLLAMHFIKKFNP----SQEQRMSPEAMGLLISYEWPGNIRELQNVIERSIILA 371 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 ++ + + K ++ + P + + EKEL+ +L++ Sbjct: 372 QGNEIKPHHLPKEIQKLDEVKNETTHGLIINFPDDGISF----DEVEKELILKALEKSNG 427 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 NQ RAA+LLG+T +K+++ Sbjct: 428 NQTRAAQLLGITRSALLYRAQKYRL 452 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 545 bits (1406), Expect = e-154, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 185/319 (57%), Gaps = 8/319 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + S V + + +A + VLI GE GTGKEL+A +HY SSR PFI +NCA Sbjct: 141 NIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARAIHYNSSRRNNPFIKVNCA 200 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 L ++LL+SELFG+E GAFTGA GRFE A GT+F DE+ + Q KLLR I+ Sbjct: 201 NLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFFDEIGEISLATQAKLLRAIQE 260 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E +RVGG++ ++VNVR++ ATN L V EG FR DL RL +++PPLR+R+ DI Sbjct: 261 KEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFRLNVVNIEIPPLRDRKEDI 320 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F + +E + GF++ A + L+ Y WPGN+REL+NVVERS+ + Sbjct: 321 PLLIAHFLAKYNKEFNKEI-KGFSKEAIKLLIGYDWPGNVRELENVVERSIIMARGAIIV 379 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 +DI + + P + + L L++ E++++ +L++ + + A Sbjct: 380 PEDIQLGATVSQQPTE-------LEILDENLSLKQIISDVERKVILKALEENNWCRTTVA 432 Query: 307 ELLGLTYHQFRALLKKHQI 325 ++L + A +K+ I Sbjct: 433 KVLKINRRSLYAKMKELGI 451 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 543 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 115/322 (35%), Positives = 184/322 (57%), Gaps = 7/322 (2%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 ++G++NS E+ E + +A + +++ GE GTGKEL+ LHY R PF+ + Sbjct: 280 GFKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKELVVRALHYGGERRDNPFVKV 339 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAA+ +++L+SELFGHE GAFTGA K+ GRFE A GTLFLDE+ + +Q K LR+ Sbjct: 340 NCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHKGTLFLDEIGDMDLSIQAKFLRI 399 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 I+ E ERVGG++ ++V+VR++CATN DL V EG FR DL RL + +PPLRER+ Sbjct: 400 IQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLYVPPLRERK 459 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI + +F + ++ + P + + L+ Y WPGN+REL+N +ER++ G Sbjct: 460 EDIPFLIHHFLKEKGKKFDK-IAPKISPEVFDALMEYDWPGNVRELENAMERAIILCGKD 518 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 L+++ I K D + + E+E++ +L++ +N+ Sbjct: 519 LIRLNNLPISIVKNNKEFDESKHVTPIDIKEI------TIRNMEREIIIEALEKCDWNRT 572 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 + ++ LG++ +K+ I Sbjct: 573 KTSKSLGISRRTLYNKMKEFNI 594 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 542 bits (1397), Expect = e-153, Method: Composition-based stats. Identities = 131/322 (40%), Positives = 186/322 (57%), Gaps = 8/322 (2%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 L+G + + EV + +A D VLI GE GTGKEL+A +HY S R + PF+S+ Sbjct: 425 KFGQLVGNSAAMQEVYRLIEKVAKTDATVLIRGESGTGKELVARAIHYHSRRSEAPFVSI 484 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAAL E LL+SELFGH GAFTGA G FE A+ GT+FLDE+ + +Q KLLRV Sbjct: 485 NCAALPETLLESELFGHARGAFTGAVTAKKGLFEEANEGTIFLDEIGDISLGLQSKLLRV 544 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ GE RVG ++P +VNVR++ ATN DL V +G FR +LL RL + LPPLRER Sbjct: 545 LQEGEFLRVGETRPTRVNVRVLAATNRDLEKAVKDGAFRPELLYRLNVITIWLPPLRERR 604 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+A +F + C+ + + GFT A + L+ WPGN+REL+NV+ER+V + Sbjct: 605 DDIPLLARHFLEKSCQRLGKEVN-GFTHEAMDALIRADWPGNVRELENVIERAVILTESK 663 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 L D+ +A + T + +E E L+ +L++ + Q Sbjct: 664 RIELGDLPRQFRN-------MAAGASGWAFTRGMSFKEAVAAYESRLILQALEESQGVQA 716 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 RAAE+LGL ++K++ + Sbjct: 717 RAAEILGLKRSTLNEMIKRYNL 738 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 535 bits (1380), Expect = e-151, Method: Composition-based stats. Identities = 128/332 (38%), Positives = 185/332 (55%), Gaps = 9/332 (2%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A N++G++ + EVL +V +AP + VL+ GE GTGKEL+A +H SSR PF+ Sbjct: 152 AFDFGNIIGDSAALGEVLSKVEQVAPTNSTVLLRGETGTGKELVAHAIHINSSRENQPFV 211 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NCAAL +L+SELFGHE GAFTGA + PGRFE ADGGTLFLDE PM VQ KLL Sbjct: 212 RVNCAALAPGVLESELFGHEKGAFTGAVAQRPGRFELADGGTLFLDECGDLPMEVQIKLL 271 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R ++ E ERVGG+Q ++V+VR++ ATN DL AM+ G+FR DL RL + LPPLR+ Sbjct: 272 RALQEREFERVGGTQTIKVDVRVISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPPLRD 331 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R D+ + +F + R + PG A + L +Y WPGN+REL+N++ER++ Sbjct: 332 RLEDLPALVAHFIAKFARS-GMTRTPGVRGAALDKLRSYTWPGNVRELENIIERAMILAR 390 Query: 242 TSDYPLDDIIIDPFKRRPPE--------DAIAVSETTSLPTLPLDLREFQMQQEKELLQL 293 + D + + A + L E + E+ + Sbjct: 391 GRELDADHLDFGRRAQNATPVSGTPSVISETASHSPPLIGDESKPLAERLLDSERREIIA 450 Query: 294 SLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 ++++ N AA +LG+ ++KH + Sbjct: 451 AVEKSNNNIASAARMLGINRSTLYYRMRKHGL 482 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 535 bits (1379), Expect = e-151, Method: Composition-based stats. Identities = 125/320 (39%), Positives = 184/320 (57%), Gaps = 3/320 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ + E+ ++ +AP + VL+ GE GTGKEL+A LH S R GP +++NCA Sbjct: 142 EIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVAKALHAGSPRAGGPMVAVNCA 201 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ALNE LL+SELFGHE GAFTGA++R GRF AD G++FLDE+ +Q KLLRVI+ Sbjct: 202 ALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFLDEIGEIAPSIQAKLLRVIQE 261 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++RVGG +P+ V+VR++ ATN DL V G FR DL RL + +PPLRER DI Sbjct: 262 REIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLYYRLNVVAISVPPLRERGQDI 321 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A++F + + + + GFT A + LL WPGN+REL+N VER+V Sbjct: 322 PLLAQHFLTRFAEKNRKRI-KGFTPAAMDHLLRCPWPGNVRELENAVERAVILSVGEYVT 380 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLD--LREFQMQQEKELLQLSLQQGKYNQKR 304 ++ + + A + + + E+E++ +L+ N+ Sbjct: 381 ERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMALDDVEREVILATLRDTGGNKSE 440 Query: 305 AAELLGLTYHQFRALLKKHQ 324 AA +LG+T LKK+ Sbjct: 441 AARVLGITRATLHKKLKKYG 460 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 121/323 (37%), Positives = 186/323 (57%), Gaps = 2/323 (0%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + D+ +G++ +V + + + D VLI GE GTGKE++A +H S R PFI Sbjct: 138 DSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVVARTIHSNSRRSSRPFIK 197 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCA + E L++SELFGHE G+FTGA + G+FE A G +FLDE+ P+ Q KLLR Sbjct: 198 INCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVFLDEIGELPLHTQAKLLR 257 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E ERVGG++ ++V+VR++ ATN +L MV EG FR DL RL V+LPPLRER Sbjct: 258 VLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYYRLNVVNVKLPPLRER 317 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + DI L+ YF + R+ + G ++ A Y WPGN+RE+KNV E++V Sbjct: 318 KEDISLLINYFVKKFARKYNKNIS-GISQEAMIFAEKYAWPGNVREIKNVCEQAVVMARN 376 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 S LDD+ + + ++ + L++ + EK+++ SL + +N+ Sbjct: 377 SVLMLDDMPL-IGNGNGFLEFKNNAKISLDTNDKRSLKDIVAEVEKQVILKSLNENNWNR 435 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 + A+ LGL A +K++ + Sbjct: 436 QNTAKALGLNRRSLYAKMKEYDL 458 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 533 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 126/329 (38%), Positives = 179/329 (54%), Gaps = 11/329 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + S L+VL QV +A D VLI GE GTGKELIA +H S R + P + +NC Sbjct: 655 EIVGNSPSLLQVLRQVDRVASTDSTVLICGETGTGKELIARAIHDRSPRRERPLVKVNCG 714 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A++ L++SELFGH GAFTGA GRFE ADGGT+FLDE+ P Q KLLRV++ Sbjct: 715 AISTGLVESELFGHVKGAFTGAIANREGRFELADGGTIFLDEVGELPPETQVKLLRVLQE 774 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E E +G ++ ++V+VR++ ATN DL MV EG FR+DL RL + +PPLR+R +DI Sbjct: 775 QEFEPIGSTKTVKVDVRVIAATNRDLETMVREGKFRSDLFYRLNVVPLTMPPLRQRANDI 834 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F + R++ L E L Y WPGNIREL+NV+ER+V S Sbjct: 835 PLLTMFFLEKFARKLGKSLGQ-IAEETMARLCQYPWPGNIRELQNVIERAVVLSTGSLLT 893 Query: 247 LD--DII-----IDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGK 299 ++ + + PE A+ + L E++ + LQQ Sbjct: 894 VEKGALPGATGVMAQGPGWTPERAMIDAAEPLSTPLGATSGNALEDVERQHIASVLQQTN 953 Query: 300 YNQ---KRAAELLGLTYHQFRALLKKHQI 325 + AA++L L R+ ++K I Sbjct: 954 WRIEGANGAAKILNLQPSTLRSRMQKLGI 982 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 532 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 178/324 (54%), Gaps = 16/324 (4%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A K L+ +++ + VL+ +A VL+ GE GTGK ++A +H SSR PF+ Sbjct: 223 ASNKSRLITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSSRRDKPFV 282 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NCAA+ +NLL+SELFG+ GAFTGA K PG+ E ADGGTLFLDE+ P +Q KLL Sbjct: 283 KINCAAIPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPTYLQSKLL 342 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 +I+ E ER+G ++ +V+VR++ ATN DL +V EG FR DL RL +++P LRE Sbjct: 343 HLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPALRE 402 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R+ DI + YF ++ + G + A LLNY +PGNIREL+N++ER+V Sbjct: 403 RKEDIPFLINYFIDLYSKQYNKHI-KGISPEAVRLLLNYDYPGNIRELENIIERAVILAK 461 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 + D+ + DL E EK+ + L+ +N Sbjct: 462 GKFIEVSDLPDEIVYNTK-------------ILTQNDLDEEID--EKQKILRVLESVNWN 506 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 + +AA++L + LKK+ + Sbjct: 507 KSKAAKILNIDRVTLWRKLKKYGL 530 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 532 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 130/325 (40%), Positives = 187/325 (57%), Gaps = 8/325 (2%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++++ EV + + +A VLI GE GTGKELIA+ LH SSR PFI +NCAA Sbjct: 137 IIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGASSRRDKPFIKINCAA 196 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + LL+SELFG+E GAFTGA PGRFE AD GTLFLDE+ P+ +Q KLLR I+ G Sbjct: 197 IPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEIPVEMQVKLLRAIQEG 256 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG + +V+VRLV ATN DL A + G FR DL RLA + LP LRER SD+ Sbjct: 257 EFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVVPISLPALRERRSDVP 316 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 ++A +F + R + + G + A L Y WPGNIREL+N++ER + Sbjct: 317 MLARHFVEKYNRRLNKKI-EGIADDAMALLQGYAWPGNIRELENLIERVLLFADGPLITA 375 Query: 248 DDIIIDPFKRRPPEDAIAVS---ETTSLPTLPLDLREFQ----MQQEKELLQLSLQQGKY 300 D+ + + ++ + +PT + L++ + E++L+ L++ Sbjct: 376 RDLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAELERDLIVKKLEETGG 435 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N RAA LL ++ + +K+ + Sbjct: 436 NVTRAARLLQISRKSLQTKMKEFGL 460 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 532 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 130/319 (40%), Positives = 189/319 (59%), Gaps = 6/319 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++L + + +++ + + +A VLI GE GTGKELIA +HY S R +GPFI +NCA Sbjct: 144 HILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCA 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E+LL+SELFGHE GAFTGAQ G FERA+ GTL LDE+ P+++Q KLLR+++ Sbjct: 204 ALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQE 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ER+GG Q ++V++R++ ATN DL AMV EGTFR DL RL + LPPLR+R DI Sbjct: 264 REFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDI 323 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A +F + E + + A L + WPGNIREL NV+ER+V + Sbjct: 324 SLLANHFLQKFSSENQRDII-DIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIF 382 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 +D+ + E + P +L+E + EK ++ L+Q + N+ R A Sbjct: 383 SEDLPPQIR-----QPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTA 437 Query: 307 ELLGLTYHQFRALLKKHQI 325 +LG++ L+++ I Sbjct: 438 LMLGISRRALMYKLQEYGI 456 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 532 bits (1372), Expect = e-150, Method: Composition-based stats. Identities = 130/324 (40%), Positives = 180/324 (55%), Gaps = 19/324 (5%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + + ++G + + +AP D VLI GE GTGKEL+A +H SSR PF+ Sbjct: 420 SAGFEGMIGRDYRMQTIYRLIQDVAPTDVTVLIQGESGTGKELVAKAIHARSSRRDNPFV 479 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NC+A LL+SELFGHE GAFTGA ++ PGRFE+A GGT+FLDE+A + Q KLL Sbjct: 480 VINCSAYPATLLESELFGHEKGAFTGAIRQRPGRFEQARGGTVFLDEIAEVDLSAQVKLL 539 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ + ER+GG + ++V+VR++ ATN DL V G FR DL RL + LPPLRE Sbjct: 540 RVLQTQKFERLGGEKSIEVDVRILAATNKDLLEEVKAGRFREDLYYRLDVVPINLPPLRE 599 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R +D L+A +F + + + A LL+Y WPGN+REL+NV+E++V Sbjct: 600 RGNDTALLARHFLERFAAVQDKRINE-ISSSAMRALLDYSWPGNVRELENVMEQAVVLCK 658 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 L+D+ RP R+ QEK LL +L+ +N Sbjct: 659 GETIALEDLPDKLQGARPAR------------------RKTIEDQEKNLLLETLEACGWN 700 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 +K AAE LG+ A LKKH I Sbjct: 701 KKMAAERLGIGRSTLYAKLKKHGI 724 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 532 bits (1372), Expect = e-150, Method: Composition-based stats. Identities = 121/332 (36%), Positives = 180/332 (54%), Gaps = 14/332 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + +G + ++ E V +A VLI+GE GTGKE++A +H+ S R + PF+ +NC Sbjct: 200 EGWIGRSRIMQQISESVHLVAKSRATVLIMGESGTGKEVVAKAIHFNSPRNRRPFVQINC 259 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ E+LL+SELFGHE GAFTGA PG+FE+A GTLFLDE+ VQ KLLRV++ Sbjct: 260 AAIPESLLESELFGHEKGAFTGAHVSRPGKFEQAHEGTLFLDEVGEISPAVQVKLLRVLQ 319 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 +ERVGG++ + V+VR++ ATN +L + + FR DL RL + LPPLR+R+ D Sbjct: 320 ERVVERVGGTKTIPVDVRIIAATNRNLEEAIRKNQFREDLYYRLNVVPIYLPPLRQRKED 379 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ +F + +E + + A L+ + WPGN+REL+N +ER V Sbjct: 380 IPLLVNHFLGRFNQENGRSMT--ISPEAISALIEHDWPGNVRELENTMERLVVMTQADSI 437 Query: 246 PLDD-----------IIIDPFKRRPPEDAIAVSE-TTSLPTLPLDLREFQMQQEKELLQL 293 + D + P + E +SL L L E + E+ + Sbjct: 438 DITDVRRTLALFPSTLPHRREVEEKPASRDSGKENGSSLKGESLLLPEAVSELERAKILD 497 Query: 294 SLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 L + + + RAA LLG+T Q + K+ I Sbjct: 498 VLDRTGWIKTRAAALLGITPRQLGYRMMKYGI 529 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 531 bits (1371), Expect = e-150, Method: Composition-based stats. Identities = 126/318 (39%), Positives = 181/318 (56%), Gaps = 2/318 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G++ +L + L+ D LI+GE GTGKEL+A +H SSR + PFI +NCAA Sbjct: 2 IIGQSIQIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQKSSRAEKPFIPVNCAA 61 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + LL+SELFGHE GAFTGAQ GRFE A+ GT+FLDE+ P+ +Q K+LRVI+ Sbjct: 62 IPSELLESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQEK 121 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ER+GG++P+QVNVR++ ATN DL V EG FR DL RL V +PPLRER+ DI Sbjct: 122 TFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDIP 181 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+ EYF + + L + LNY WPGN+REL+N++ER + + + Sbjct: 182 LLCEYFINKFSHKFGYSL--QIKPEVMQIFLNYTWPGNVRELENLIERLYVLNEGGNINI 239 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 DI + + + + +DL E + EK+L+ +L + + RAA+ Sbjct: 240 KDIPERIRFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHGWIKSRAAK 299 Query: 308 LLGLTYHQFRALLKKHQI 325 L + +K+ I Sbjct: 300 YLNINRTTLIEKMKRLNI 317 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 126/325 (38%), Positives = 175/325 (53%), Gaps = 6/325 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++G + L + E + +A VLI GE GTGKEL A +H LSSR F+ +NC Sbjct: 140 STIIGRSRQMLNLFEMIEKVAESSATVLIQGESGTGKELAARAIHQLSSRSSKNFVPVNC 199 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ ++LL+SELFGH G+FTGA GRFE AD GTLFLDE+ +Q KLLRV++ Sbjct: 200 AAIPDDLLESELFGHVKGSFTGAYANRIGRFEMADKGTLFLDEIGDMKATLQVKLLRVLQ 259 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E E VG ++ +V+VR++ A+N +L V FR DL RL+ + +PPLR+R D Sbjct: 260 AKEFEPVGSTRSQKVDVRIIAASNKNLDEQVATRDFREDLYYRLSVIPITIPPLRDRRED 319 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ +F Q R+ + L GFT A E L NY WPGN+REL+N+VER + + Sbjct: 320 IPLLINHFQGQFNRD-RRRLVKGFTREALEMLCNYDWPGNVRELENLVERMITMKESGFI 378 Query: 246 PLDDII-----IDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 +DD+ P + +V LP + L E L+ +L + Sbjct: 379 TVDDLPEKYLAPRTVVAPPLSVSGSVPVGKELPPEGICLNSAVDAFENGLIMQALHRTGG 438 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N+K AA LL L LKK + Sbjct: 439 NKKEAAALLNLKRTTLIEKLKKKNL 463 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 129/311 (41%), Positives = 178/311 (57%), Gaps = 3/311 (0%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++GE+ L + E + +A D VLI GE GTGKEL+A +H LS+R F++LNC Sbjct: 142 NNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKELVARAIHDLSNRSDKNFVALNC 201 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ + LL+SELFGH G+FTGA GRFE AD GTLFLDE+ +Q KLLRV++ Sbjct: 202 AAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTLFLDEIGDMKANLQVKLLRVLQ 261 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ELE VG ++ +V+VR++ ATN +L MV FR DL RL+ + LPPLRER SD Sbjct: 262 SRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFREDLYYRLSVIPIMLPPLRERGSD 321 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + L+ F + R + + GF ++ E L NY WPGN+REL+N+VER V T Sbjct: 322 VPLLLNSFLEKFNRSKQRKV-QGFDKQVMEILSNYDWPGNVRELENLVERLVIIKTTGVI 380 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + D+ R + E +LP L + E L+ +L++ N+K A Sbjct: 381 SIHDLPEKYRGGRT--TTVLHGEPMTLPDDGFCLNSAVEEFENRLILQALEKSGGNKKEA 438 Query: 306 AELLGLTYHQF 316 AELL L Sbjct: 439 AELLNLKRTTL 449 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 530 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 123/322 (38%), Positives = 184/322 (57%), Gaps = 2/322 (0%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 DN++G + V ++ + D +LI+GE GTGKEL+A +HY R + PF+++ Sbjct: 152 RFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAKAIHYNGHRREKPFVAI 211 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NC A+ LL+SELFGH GAFTGA G+F++A GT+FLDE+ T P+ +Q KLLRV Sbjct: 212 NCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGTIFLDEIGTMPLHLQMKLLRV 271 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E+E+VG S+ ++++VR++ ATN +L V +G FRADL RL + LPPLRER Sbjct: 272 LQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYYRLNVIPIALPPLRERR 331 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+A YF + C E+ PL T A L NY WPGN+REL+NV+ER+V + Sbjct: 332 EDIALLARYFLQKTCTEMNQPLI-SITPGAMNCLENYHWPGNVRELENVIERTVTLTDSI 390 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 D+ + ++ +S L +D+ E E+ L++ ++ + Sbjct: 391 AIGKSDLPANISGSCCEDEDPQISCP-RLTESGMDMPEVIAGIERCLIKSAMGLSGGVKA 449 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 RAA LL + +K+ I Sbjct: 450 RAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 530 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 127/323 (39%), Positives = 181/323 (56%), Gaps = 11/323 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 Y D + G+ +EV + + A D VLI GE G GKE+ A +HYLS R PF+++ Sbjct: 418 YLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAI 477 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLR 122 NCAA+ ENLL+SELFG+E GAFTGA++ G+ E+ADGGTLFLDE+ P+ +Q KLLR Sbjct: 478 NCAAIPENLLESELFGYEEGAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLR 537 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 I+ E ER+G + P +V++R++ ATN L +V EG FR DL RL + +PPLRER Sbjct: 538 FIQNREFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRER 597 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+ F + C + T A L+NY WPGNIREL+NV+ER+ Y Sbjct: 598 RDDIPLLVNRFMNEFCER-RKMAPKIVTSEAMNILMNYSWPGNIRELQNVIERAYYLAEG 656 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + + + + I T +E + EK+L+ L+ YN+ Sbjct: 657 NLIKPEHLPAQLTSKALSGERI---------TKITTFKEAVAEVEKKLIIEGLKATNYNK 707 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 A+LLG+ +K++ I Sbjct: 708 LACAKLLGIPRATLYQKIKEYGI 730 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 529 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 127/325 (39%), Positives = 181/325 (55%), Gaps = 12/325 (3%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + E N++G A S V + + +AP + VLI+GE G GKEL+A+ +HY S R PF Sbjct: 236 VGEQPANIIGNAKSMRVVFKMIDKIAPTNATVLILGESGVGKELVANAIHYKSQRAASPF 295 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I NCAAL E++++SELFGHE GAFTGA GRFE A+ GT+FLDE+ + +Q KL Sbjct: 296 IKFNCAALPESIVESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKL 355 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LR+++ E ERVGG++ ++ +VR++ ATN +L + EG FR DL RL V +PPLR Sbjct: 356 LRILQEKEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLR 415 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+SDI+L+A+YF + + + + A + L+ Y WPGN+REL+N VER+V Sbjct: 416 ERKSDILLLADYFVEKYNQMNGKGV-RRISTTAIDMLMRYHWPGNVRELENCVERAVILS 474 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + A L++ E EL+ +L+ K Sbjct: 475 DDGVIHGYHLPPTLQTAESSGTPCAG-----------PLQQRLDALEYELIVEALKNTKG 523 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N +AA LGLT +KK I Sbjct: 524 NMSKAAMELGLTDRVMGLRVKKFDI 548 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 528 bits (1363), Expect = e-149, Method: Composition-based stats. Identities = 130/320 (40%), Positives = 181/320 (56%), Gaps = 11/320 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +++GE+ + + + A VLI+GE GTGKELIA LH S R PFI + Sbjct: 141 RFHDIIGESPQLQGIYDVIRRAAGTRATVLILGESGTGKELIAQALHQESPRKDKPFIRV 200 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 +CAAL+ENLL+SELFGHE G+FTGA R GRFE ADGGTLFLDE+ VQ KLLRV Sbjct: 201 HCAALSENLLESELFGHEKGSFTGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRV 260 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E ERVGG+Q L+V+VR+V AT+ DL A V G FR DL RL V LPPLR+R+ Sbjct: 261 LQQREFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRK 320 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 SD+ + +F + + G + LL++ WPGNIREL+N +ER+V Sbjct: 321 SDVPALVNHFLEKYSDSYGKQV-RGLAPGTLQALLSHDWPGNIRELENAIERAVVLAQGQ 379 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + DD+ RP + + E+E + +L+ + + Sbjct: 380 ELSTDDLPPVLRGPRPHGTSTGALIPGA----------TLAAIEREAILRTLEMVQGSTS 429 Query: 304 RAAELLGLTYHQFRALLKKH 323 RAAE+LG++ + + LK++ Sbjct: 430 RAAEVLGISVRKIQYRLKEY 449 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 121/323 (37%), Positives = 181/323 (56%), Gaps = 2/323 (0%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + D+L+G++ +F VL+ V + + +L+ GE GTGKE++A +H +R PF++ Sbjct: 138 QQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGKEMVARAIHKHGNRADKPFVA 197 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAA+ E LL+SE+FGH GAFTGA GRF++AD GTLFLDE+ P+ +Q K+LR Sbjct: 198 VNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEVGDMPLALQAKILR 257 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 ++ +E VG + +V+VR++ ATN +L V FR DL RL + LP LRER Sbjct: 258 ALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRER 317 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+A +FA + + GF+ A + + +Y WPGNIREL+N VER+ Sbjct: 318 VEDIALLARHFAHSLGATAGKRIS-GFSPEALQAMASYAWPGNIRELQNCVERATIVATG 376 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 D+ F + + + + P +P DL + EK + +LQQ Q Sbjct: 377 QVIEEKDLPGYLFG-PQAQGTESSAAISVGPQVPSDLEAALAEVEKAYILAALQQSNGVQ 435 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AA+L+G++ F LKK I Sbjct: 436 AAAAQLIGISERSFWYRLKKLGI 458 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 116/322 (36%), Positives = 168/322 (52%), Gaps = 17/322 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++G V +S ++ VLI+GE GTGKELIA +H S R + +NCA Sbjct: 764 DIIGAGPEMQRVFHMLSQVSFAQSTVLILGETGTGKELIARAIHNGSPRKNKLMVKVNCA 823 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL NL++SELFGHE G+FTGA +R G+FE A+ GTLFLDE+ P+ +Q KLLR I+ Sbjct: 824 ALPANLIESELFGHERGSFTGAIERRIGKFELANHGTLFLDEIGEMPLDLQVKLLRAIQE 883 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ER+GG ++ +VR++ ATN +L V EG FR+DL RL + LPPLR+R+ DI Sbjct: 884 REIERIGGKSTIKTDVRIIAATNRNLQKEVAEGRFRSDLYYRLNVFPIVLPPLRDRKEDI 943 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A +F + R + A + L Y WPGN+REL++V+ERS+ + Sbjct: 944 SLLAAHFIERFARSTGRKNIK-LSSTAMKQLTAYNWPGNVRELEHVLERSILLTQGNIIR 1002 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ---K 303 + P D + E++ + L + K Sbjct: 1003 EIHLSSQPKSEAKVRQ-------------EEDFSRTLDEMERDYILGVLNKCKGKIFGPG 1049 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AAE+LGL ++K I Sbjct: 1050 GAAEILGLHVSTLNHRIRKLGI 1071 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 129/332 (38%), Positives = 191/332 (57%), Gaps = 15/332 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ V++ V H+AP VL+ GE GTGKE+IA +HYLS R +GPFI +NC+ Sbjct: 195 GVIGQSKQMQAVMDLVYHVAPSRSTVLLRGESGTGKEVIARTIHYLSPRKEGPFIKVNCS 254 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E +L+SELFGHE GAFTGA GRFE A GGTLFLDE+ VQ KLLRV++ Sbjct: 255 ALPETILESELFGHEKGAFTGALFERKGRFELAHGGTLFLDEIGDISPAVQVKLLRVLQE 314 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG++ ++V+VR++ ATN +L V +G FRADL R+ + LPPLRER+ DI Sbjct: 315 REFERVGGNKTIRVDVRVITATNKNLEEAVLKGEFRADLYFRINVVSISLPPLRERKEDI 374 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A++ ++ +E+ L T A + L+N WPGN+REL+N +ER+ + Sbjct: 375 PLLADHILNKIGKELNRKL--RITPEALKLLINCHWPGNVRELENCLERAATNSRNNWID 432 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEK-------------ELLQL 293 D+ + P + S P + + + + + + E + Sbjct: 433 EIDVACRRNQCSSPMLWKKELQVISTPVVSSEEAKSREETPRSSFFSPLISDDPKEKIIQ 492 Query: 294 SLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 ++++ + Q +AA LL +T Q LKK+ I Sbjct: 493 AMEKCGWVQAKAARLLNITPRQLGYALKKYGI 524 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 527 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 123/322 (38%), Positives = 189/322 (58%), Gaps = 6/322 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++ ++ + ++L+QV +A D VLI GE GTGKE+IA +H LS R P + +NCA Sbjct: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ +LL+SELFGH+ GAFTGA H GRFE ADGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ER+GGS+ + VNVR++ ATN DL MV + FR+DL RL ++LPPLR+R DI Sbjct: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A++F +M R + + A L+++ WPGN+REL+NV+ER+V + Sbjct: 526 PLLAKHFTQKMARHMNRAID-AIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK--- 303 L + + + P + + ++ L E + E++ + L++ Sbjct: 585 L-HLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEE-ERQRIVQVLRETNGIVAGPR 642 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AA LG+ + +++ I Sbjct: 643 GAATRLGMKRTTLLSRMQRLGI 664 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 527 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 126/327 (38%), Positives = 188/327 (57%), Gaps = 17/327 (5%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + D+++G+++ L +L+ +S +AP D VLI GE GTGKE +A +H LS R PF+ Sbjct: 332 SPVFDSMVGQSHLMLNILDLISQVAPSDTSVLITGESGTGKEHVADTIHQLSPRKSKPFV 391 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NCAAL NL++SELFGHE GAFTGA +R GRFE+ADGGT+FLDE+ P+ VQ KLL Sbjct: 392 KVNCAALPINLIESELFGHEKGAFTGATERRIGRFEQADGGTIFLDEIGDMPLEVQVKLL 451 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ E+ERVGG+QP+++N+R++ ATN +L + EG FR D+ RL + +P LRE Sbjct: 452 RVLQQREIERVGGTQPIKINIRVITATNRNLERAIAEGKFRLDIYYRLNVFPIAMPALRE 511 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI + +F R+ + G ++RA L++Y WPGNIREL+NV+ERSV Sbjct: 512 RTEDIAPLVHHFIGYFGRKTGKNIS-GISDRALAMLMDYGWPGNIRELENVIERSVLLAK 570 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 + + P + V + + E++ + L+ + Sbjct: 571 GNSIDTVYLPAHPAVEGIAKAGPPVLKN-------------IFENERDHIISVLKACEGR 617 Query: 302 QK---RAAELLGLTYHQFRALLKKHQI 325 AA++L + + +KK I Sbjct: 618 ISGENGAAKILAIPPTTLSSKMKKLGI 644 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 131/329 (39%), Positives = 187/329 (56%), Gaps = 11/329 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++GE+ E+ + +A VLI GE GTGKEL+A LH S R PFI +NCA Sbjct: 148 GIIGESPPIQELYAILERVADTPTTVLISGESGTGKELVARALHENSGRRDRPFIKVNCA 207 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ++L++SELFG+E GAFTGA PGRFE A GGTLFLDE+ P +Q KLLRV++ Sbjct: 208 AIPKDLMESELFGYERGAFTGAVASKPGRFELASGGTLFLDEIGEIPNEMQVKLLRVLQE 267 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG + + V+VRLV ATN DL + GTFR DL RL + LP LR+R SDI Sbjct: 268 SEFERVGGIKTIHVDVRLVAATNRDLKREIAAGTFREDLFYRLNVVPIALPALRDRRSDI 327 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +F + +K + A E L ++ WPGNIREL+NVVER++ + Sbjct: 328 PHLCAHFVAKFNARLKKSI-ESIEPEALERLASHAWPGNIRELENVVERALLFADGARIR 386 Query: 247 LDDIIIDPFKRRPP------EDAIAVSETTSLPTLPLDLRE----FQMQQEKELLQLSLQ 296 LDD+ + A A ++T++ P+ P L+E + E++L++ +L+ Sbjct: 387 LDDLPEEIRGGATSAPGAALPLAAAAADTSAAPSTPDGLKEQVKAAMSKLERDLIERALK 446 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKHQI 325 Q N AA LL ++ + +K+ + Sbjct: 447 QTHGNVTHAARLLKISRKGLQLKMKELNL 475 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 526 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 121/318 (38%), Positives = 181/318 (56%), Gaps = 14/318 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ + E+ + +A + VLI GE GTGKEL+A +H S R PFI ++C Sbjct: 135 EIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKNSLRKSKPFIIVDCT 194 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 + ENLL+SELFGHE GAFTGA +R G E A+ GT+FLDE+ PM++Q+KLLR ++ Sbjct: 195 TIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIGELPMLLQKKLLRFLQE 254 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++R+G +Q ++V+VR++ ATN DL + EG+FR DL RL + LPPLRER+ DI Sbjct: 255 KEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVVRINLPPLRERKEDI 314 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F + +E P+ P L+NY WPGNIREL NV+ER+V + Sbjct: 315 PLLVNHFLNKFSKENNKPI-PQLEPEVMNALINYYWPGNIRELANVIERAVVLSPSGLIS 373 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + + + ++ EK L+ +L +NQ +AA Sbjct: 374 IKHLPRRIQENTGWTIIKENTFN-------------LLEVEKALILKALNSTGWNQTKAA 420 Query: 307 ELLGLTYHQFRALLKKHQ 324 E+LG++ Q R +K H Sbjct: 421 EILGISRKQLRTKMKHHG 438 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 526 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 125/323 (38%), Positives = 183/323 (56%), Gaps = 8/323 (2%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + L+G + VL+QV +A VL++GE GTGKEL+A +H S R + PF+S Sbjct: 170 DRAHGLVGSSEPMRRVLDQVRKVASTGATVLVLGESGTGKELVARAIHDASPRREQPFVS 229 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 ++CAA+ E LL+SELFGHE GAFTGA +R GRFE A+GGTLFLDE+ P VQ KLLR Sbjct: 230 ISCAAIPEGLLESELFGHEKGAFTGAIRRKLGRFELANGGTLFLDEVGEIPHAVQVKLLR 289 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ + ERVGG + ++V+VR+V ATN +L MV G FR DL RL + LPPLR+R Sbjct: 290 VLQERQFERVGGEETVEVDVRVVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDR 349 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 D+ +A +F ++ + + G A E L +RWPGN+REL+NV+E+++ Sbjct: 350 PGDVEELARFFVARLAPRMSRAV-TGLAPEALELLRRHRWPGNVRELENVIEQALVFAEG 408 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 D+ K P +P+ L + E++L+ + ++ + + Sbjct: 409 ELVRPRDLPEGVRKAPPAPSLP-------VPSGDRSLTDILEDLERQLILAAYEKARGVK 461 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 A LLG+ L+K+ I Sbjct: 462 AETARLLGIKPSALYYKLEKYGI 484 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 116/321 (36%), Positives = 176/321 (54%), Gaps = 4/321 (1%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +LG + + + + +A D V+I GE GTGKEL+A +H+ S+R P I +N Sbjct: 152 FGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGKELVARAIHFNSNRNNFPLIPVN 211 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A+ E+LL+SELFGHE GAFTGA + GRFE A GG++FLDE+ +Q K+LRVI Sbjct: 212 CGAIPEDLLESELFGHEKGAFTGAIRNRLGRFELAQGGSIFLDEIGDMSPALQVKVLRVI 271 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + + ER+GG + + +VR++ AT+ +L V E FR DL R+ + LP LRER + Sbjct: 272 QEKQFERIGGVKTINADVRIIAATHQNLELAVTEKRFREDLFYRINVIPIHLPALRERGA 331 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI ++A +F + + K FT A +L+Y WPGN+REL+N++E V + Sbjct: 332 DIAILANHFLQKFA-QSKKKEVTRFTPEAIACMLHYPWPGNVRELENLIEMLVVMKEDGE 390 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 L+D+ + + + +P +D + Q EK +L +L + + R Sbjct: 391 IKLEDLPSKIRQFKKETQSFK---EYQIPEEGIDFNDVVYQFEKNILLKALAKTNGVKNR 447 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA+LL L LK+ I Sbjct: 448 AAKLLNLNRTTLVEKLKRLNI 468 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 124/321 (38%), Positives = 182/321 (56%), Gaps = 10/321 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 ++G++ E+ + + +A VLI GE GTGKELIA +H S R GPFI + Sbjct: 164 AFGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPFIKV 223 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAAL+E +L+SELFGH GAFTGA PGRFE A GGTLFLDE+ +Q KLLRV Sbjct: 224 NCAALSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQVKLLRV 283 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E ERVGG++ L+V+VR++ ATN DL A ++ GTFR DL RL + LPPLRER Sbjct: 284 LQEEEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLRERR 343 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+ F + E + G ++ A+ L+N+ +PGNIREL+N++E +V Sbjct: 344 EDIPLLISSFLSRYNAEFGKNVV-GLSQEAQNILMNHSYPGNIRELQNIIEHAVLLSTGR 402 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + ++ D + E +S + L E +++ ++++ + N Sbjct: 403 TIGVRELPRDL---------APIPEESSFADVALSRSNALRTMEDVMIRKAVEKTQGNMS 453 Query: 304 RAAELLGLTYHQFRALLKKHQ 324 +AA+LLG+ L++ Sbjct: 454 QAAKLLGIGRSTLWRKLREMG 474 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 122/320 (38%), Positives = 178/320 (55%), Gaps = 12/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 N++G + EV E + +A VLI+GE G GKEL+A+ +HY S + ++ NC Sbjct: 217 SNIIGNSKPMQEVYELIHKVASTKATVLILGESGVGKELVANAIHYNSPNAEAALVTSNC 276 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A L ENL +SELFGHE G+FTGA H G FE+ADGGT+FLDE+ VQ KL+RV++ Sbjct: 277 APLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVGELSPTVQAKLVRVLQ 336 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ERVGGS+P++V+VR++ ATN +L MV +GTFR DL RL + +PPLRER SD Sbjct: 337 NRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLNVFPITVPPLRERGSD 396 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 ++ +A++F RE + + A L++Y WPGN+REL+NV+ER+V Sbjct: 397 VIALADHFVSAFSRENGKNV-KRISTPALNMLMSYHWPGNVRELENVMERAVILSDDDVI 455 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 ++ + S L L E E E++ +L+ + A Sbjct: 456 HSYNLPPSLQTSKE-----------SGTAFGLTLEEKIKAVECEMIVEALKNSSGHIGEA 504 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+ LGL ++++ I Sbjct: 505 AKELGLARRMLGVRMERYGI 524 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 128/319 (40%), Positives = 178/319 (55%), Gaps = 12/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + EV V +A VL++GE G GKEL+AS LHY S GPFI NCA Sbjct: 241 NIIGNSKPMQEVYAMVHKVASTKATVLLLGESGVGKELVASALHYNSPVADGPFIKANCA 300 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E L +SELFGHE GAFT A H G FE+A GGT+FLDE+ + Q KLLRV++ Sbjct: 301 ALPEALAESELFGHERGAFTSAIATHKGYFEQASGGTIFLDEVGELSLPTQAKLLRVLQE 360 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVGG++P++V+VR++ ATN +L MV EGTFR DL RL + +PPLR+R SD+ Sbjct: 361 RTFERVGGAKPVKVDVRIIAATNRNLAEMVAEGTFREDLFYRLNVFPITIPPLRDRGSDV 420 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +A++F EI P+ + A L++Y WPGN+REL+NV+ERSV Sbjct: 421 ITLADHFVTTYSAEIGKPI-KRISTPAINMLMSYHWPGNVRELENVIERSVILAEEGVIH 479 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 D+ + T + L + E E++ +L+ N +AA Sbjct: 480 GYDLPPSLQ-----------TPTETGTGFSGTLEDRVTAVEYEMIVEALKASNGNVGQAA 528 Query: 307 ELLGLTYHQFRALLKKHQI 325 LGLT +++H + Sbjct: 529 TTLGLTRRMLGLRMERHGL 547 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 127/322 (39%), Positives = 191/322 (59%), Gaps = 14/322 (4%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 ++ + ++G++ + ++L +++ +AP D VLI G+ GTGKEL+A LH S+R P Sbjct: 134 VSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVARALHASSARSDKPL 193 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 ++LNCAALNE+LL+SELFGHE GAFTGA KR GRF ADGGTLFLDE+ ++Q +L Sbjct: 194 VTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRL 253 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LR I+ E++RVG +Q L V+VRL+ AT+ DL + G FR DL RL ++ P LR Sbjct: 254 LRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYYRLNVVTIETPSLR 313 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R DI L+AE+F + GFT +A + L++Y WPGNIREL+N +ER+V Sbjct: 314 QRREDIPLLAEHFLQRFAAR-NRKAVKGFTPQAMDLLIHYAWPGNIRELENAIERAVVLL 372 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 ++ + + ++P +P + ++ EKE++ +L++ Sbjct: 373 TGEYISERELPLAIANQ-------------AMPLMPAQAIQPLVEVEKEVILAALEKTGG 419 Query: 301 NQKRAAELLGLTYHQFRALLKK 322 N+ AA LG+T A L + Sbjct: 420 NKTEAARQLGITRKTLLAKLSR 441 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 524 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 115/322 (35%), Positives = 180/322 (55%), Gaps = 7/322 (2%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 N++G++ + + + + + +AP + VLI GE GTGKE++A +H+ S R P++++N Sbjct: 139 FGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKSIHFNSHRKDAPWVAVN 198 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAAL E++L+SELFGHE GAFTGA GRFE ADGGTLFLDE+ +Q KLLRV+ Sbjct: 199 CAALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDEIGEISSSLQVKLLRVL 258 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + ERVGG +P++V++RL+ ATN DL V FR DL RL +QLPPLRER+ Sbjct: 259 QEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQK 318 Query: 185 DIMLMAEYFAIQMCRE-IKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+ ++F + Y WPGN+REL+NV+ER++ + Sbjct: 319 DIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVRELENVIERAIILCNSD 378 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 ++D+ + + +++ + + L E E+ +++ ++ Q Sbjct: 379 AISVNDLPRELTR------SVSNTLHMEGIPVDATLYETLSMVEQAMIKRAMLMSDNVQS 432 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AA++LG+ +KK + Sbjct: 433 HAAQILGIGKSGLNQKIKKFGL 454 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 176/320 (55%), Gaps = 9/320 (2%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + ++G + EV + + +A D VLI GE GTGKEL+A +HY S+ QGP + Sbjct: 141 DKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGKELVAETIHYNSTFSQGPLVK 200 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAAL E LL+SELFGHE G+FTGA ++ GRFE A GT+FLDE+ + Q KLLR Sbjct: 201 VNCAALPETLLESELFGHEKGSFTGADRQRKGRFELAHKGTIFLDEIGEMTLGTQRKLLR 260 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E ERVGGS ++V+ R++ ATN L V G FR DL RL + LPPLRER Sbjct: 261 VLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFREDLFYRLNVIHIHLPPLRER 320 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFP-GFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 + DI L+ +YF + P +E A + L+ + WPGN+REL+N +ER+V Sbjct: 321 KEDIPLLVDYFLQKH--RYHKDGPPASISEEAIKVLMEHDWPGNVRELENTIERAVILAQ 378 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 ++ + + + + L E E +++ +L++ K + Sbjct: 379 GGVITTHHLVFSQIRTGR------NIDLSEVIDKTRSLDEAMRIIESKIILEALEKAKGD 432 Query: 302 QKRAAELLGLTYHQFRALLK 321 AAE+L ++ + + L+ Sbjct: 433 HALAAEILDISESELKRKLR 452 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 523 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 119/319 (37%), Positives = 183/319 (57%), Gaps = 12/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + + + +A L++GE G GKEL+AS +H+ S R + PFI NCA Sbjct: 236 NIIGNTKPMVSLYSMIDKIAKTSATTLVLGESGVGKELVASAIHFKSRRAEKPFIKFNCA 295 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL EN+++SELFGHE GAFTGA GRFE A+ GT+FLDE+ + VQ KLLR+++ Sbjct: 296 ALPENIVESELFGHEKGAFTGALATRHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQE 355 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGGS+ ++V+VR++ ATN +L ++ +G FR DL RL + +PPLRER++DI Sbjct: 356 KEFERVGGSKTIKVDVRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTDI 415 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +L+A+YF + + + + + A + L+ Y WPGN+REL+N +ER+V + Sbjct: 416 LLLADYFVEKYNKANQKGV-RRISTTAIDMLMRYHWPGNVRELQNCIERAVILSEDNVIH 474 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + +S L++ EKE++ +L++ + N RAA Sbjct: 475 GYHLPPTLQ-----------TAESSGTPYTGSLQQKLDAIEKEMIIEALKRTQGNMSRAA 523 Query: 307 ELLGLTYHQFRALLKKHQI 325 LGL+ +KK I Sbjct: 524 MQLGLSERIMGLRIKKFNI 542 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 123/311 (39%), Positives = 177/311 (56%), Gaps = 5/311 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++GE++ L + E + +A D VLI GE GTGKEL+A +H LS+R F+ +NC Sbjct: 142 NNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKELVARAIHDLSNRATKNFVPVNC 201 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ ++LL+SELFGH G+FTGA GRFE AD GTLFLDE+ +Q KLLRV++ Sbjct: 202 AAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTLFLDEIGDMKPNLQVKLLRVLQ 261 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ELE VG ++ +V+VR++ ATN +L +V FR DL RL+ + LPPLRER++D Sbjct: 262 NKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFREDLYYRLSVIPITLPPLRERKTD 321 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ F + R + + F + + L N+ WPGN+REL+N+VER V G+ Sbjct: 322 IPLLLNNFLEKFNRNKQRKV-QSFDKNTMDILCNFDWPGNVRELENLVERLVILKGSGTI 380 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D+ + SE +LP L E +L+ +L++ N+K A Sbjct: 381 TFQDLPEKYRGIKSAPK----SERLTLPDTGFCLNSAVEDFENQLILQALEKTGGNKKEA 436 Query: 306 AELLGLTYHQF 316 A LL L Sbjct: 437 ATLLNLKRTTL 447 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 117/318 (36%), Positives = 176/318 (55%), Gaps = 12/318 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +L+ +++ ++ + + +AP D VLI GE GTGKE++A +H LS+R P + ++C Sbjct: 144 DLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKEVVARAIHALSTRRFHPMVPVHCG 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E LL+SELFGHE GAFTGAQ R G+FE A+GGT+FLDE+ + Q LLRV++ Sbjct: 204 ALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGTVFLDEIGDISLKTQTDLLRVLQE 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ RVGG+QP++V+ R+V ATN DL ++ EG FR DL RL ++LPPLR+R DI Sbjct: 264 REIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRPDLFYRLNVFRIELPPLRDRREDI 323 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F + ++ + + A L Y WPGN+REL+N VER++ + Sbjct: 324 PLLVNHFTKKFAEQMNKRVTRVASP-AMNMLQQYPWPGNVRELENAVERAMVVAQEPELR 382 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 D ++ + EKE + L + +NQ RAA Sbjct: 383 ETDFVLKVKAAATMSSTNGTGTP-----------KTLEDIEKEHILHVLDETNWNQTRAA 431 Query: 307 ELLGLTYHQFRALLKKHQ 324 E+L + +K++ Sbjct: 432 EMLDIDRVTLHHKIKRYG 449 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 136/328 (41%), Positives = 182/328 (55%), Gaps = 11/328 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G+ EV + ++ +AP L++GE GTGKEL+A +H R PFI LNCA Sbjct: 203 NIIGQCKRIQEVYDYIAKVAPSRATALLLGESGTGKELVARAIHQAGPRAGEPFIKLNCA 262 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL ENLL+SEL GHE GAFTGA + GRFE ADGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 263 ALPENLLESELLGHEKGAFTGAVGQKKGRFELADGGTLFLDEIGELPLALQAKLLRVLQE 322 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ER+GGS+ + V+VR++ ATN L A V EG FRADL RL V LPPLRER DI Sbjct: 323 RTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVFRADLYYRLNVVPVVLPPLRERREDI 382 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ ++F + R + + F L Y WPGN+REL+N+VER V Sbjct: 383 PLLLDHFLRESNRHNRRRV--KFAAAVIRRLNEYSWPGNVRELQNLVERLVIMVDGEVVN 440 Query: 247 LDDIIIDPFKRRP---------PEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQ 297 LDD+ P + AV S + + EKE + +L++ Sbjct: 441 LDDLPAYLADPDPANRRCPRGFADQPAAVLPAPSWVDQGMAAGRSLWEMEKEEVLAALRR 500 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 + Q RAA LG+T Q ++K+ I Sbjct: 501 HGWVQTRAARDLGITPRQMGYRIRKYAI 528 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 125/324 (38%), Positives = 184/324 (56%), Gaps = 14/324 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + ++G + FL VL ++ ++ VLI+GE GTGKELIA +H S R P I++N Sbjct: 333 FEGIVGRSPVFLSVLHSINMVSAAPSSVLILGESGTGKELIARCIHRQSPRKNKPLITVN 392 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAAL L++SELFGHE GAFTGA + G+FE ADGGT+FLDE+ P+ Q KLLRV+ Sbjct: 393 CAALPAELIESELFGHEKGAFTGATDKRAGKFEMADGGTIFLDEIGELPIESQVKLLRVL 452 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E ERVGGS+ ++V+VR++ ATN +L V EG FR DL RL V+LP LRER+ Sbjct: 453 QEKEFERVGGSKVIKVDVRVIAATNRNLEKEVAEGRFRLDLYYRLNVFPVELPSLRERKE 512 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+A++F ++ ++ + + A + L +Y WPGNIRE+++V+ERS+ + Sbjct: 513 DIPLLAQHFVDKLSEKLSRNI-TDISPDALKALRSYDWPGNIREMEHVMERSLLMTTGTI 571 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN--- 301 + A T++ + + + + E E + L+ K Sbjct: 572 LKQIMLP----------KMAAQPVGTTISSADGNRIKTLEEMEIEHILQVLKSCKGKVCG 621 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 AAELLGL + ++K I Sbjct: 622 VGGAAELLGLPPSTLNSKIRKLGI 645 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 522 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 138/320 (43%), Positives = 181/320 (56%), Gaps = 11/320 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 N++G+A V E V AP VLI+GE GTGKEL A LH S R FI + Sbjct: 149 RFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFAQALHEESPRADKAFIKV 208 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAAL+E LL+SELFGHE GAFTGA R GRFE ADGGTLFLDE+ +Q KLLRV Sbjct: 209 NCAALSETLLESELFGHEKGAFTGAIGRKEGRFELADGGTLFLDEIGDISPALQIKLLRV 268 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E ERVGG+Q L+V+VRLV ATN DL A V G FR DL RL V LPPLR+R+ Sbjct: 269 LQQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLYYRLNVVAVTLPPLRQRK 328 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI + +F + + + G +L++ WPGN+REL+NVVER+V S Sbjct: 329 GDIPALVSHFIDKYSKAYGKDI-RGLAPGTLNAVLSHDWPGNVRELENVVERAVVLCKGS 387 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + DD+ RP E A + + E+E + +L+ + Sbjct: 388 ELTADDLPPTLRGPRPRERAPGALIPGA----------TLYEIEREAILRTLEMVGGSTS 437 Query: 304 RAAELLGLTYHQFRALLKKH 323 RAAE+LG++ + + LK++ Sbjct: 438 RAAEILGISVRKIQYRLKEY 457 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 522 bits (1346), Expect = e-147, Method: Composition-based stats. Identities = 129/316 (40%), Positives = 180/316 (56%), Gaps = 12/316 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ + +L ++ +AP D VLI GE GTGKEL+A LH S+R + P + LNCA Sbjct: 140 GMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVARALHASSARSRRPLVILNCA 199 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ALNE+LL+SELFGHE GAFTGA KR GRF ADGGTLFLDE+ ++Q +LLR I+ Sbjct: 200 ALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQE 259 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++RVG +Q L V+VRL+ AT+ DL V+ G FR DL RL + +PPLR R DI Sbjct: 260 REVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVTIDMPPLRHRREDI 319 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +A YF + GFT +A + L++Y WPGNIREL+N VER+V Sbjct: 320 PPLARYFLQRYAER-NRKAVQGFTPQAMDLLIHYAWPGNIRELENAVERAVVLLTGEYIS 378 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 ++ + + D + ++ EKE + +L++ N+ AA Sbjct: 379 ERELPLAITGT-----------PVADAPHGDDSIQPLVEVEKEAILAALERTGGNKTEAA 427 Query: 307 ELLGLTYHQFRALLKK 322 LG+T A L + Sbjct: 428 RRLGITRKTLLAKLSR 443 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 521 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 124/321 (38%), Positives = 184/321 (57%), Gaps = 14/321 (4%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + + ++G + + +L +++ +AP D VLI G+ GTGKEL+A LH S+R P + Sbjct: 135 SAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDKPLV 194 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +LNCAALNE+LL+SELFGHE GAFTGA KR GRF ADGGTLFLDE+ ++Q +LL Sbjct: 195 TLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLL 254 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R I+ E++RVG +Q + V+V L+ AT+ DL V+ G FR DL RL +++P LR+ Sbjct: 255 RAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQ 314 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI L+A++F + GFT +A + L++Y WPGNIREL+N +ER+V Sbjct: 315 RREDIPLLADHFLRRFAER-NRKAVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLT 373 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 ++ + + A + + EKE++ +L++ N Sbjct: 374 GEYISERELPLAIAATPIKAENSAEIQP-------------LVDVEKEVILAALEKTGGN 420 Query: 302 QKRAAELLGLTYHQFRALLKK 322 + AA LG+T A L + Sbjct: 421 KTEAARQLGITRKTLLAKLSR 441 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 133/323 (41%), Positives = 178/323 (55%), Gaps = 2/323 (0%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +G +++ V EQ+S +AP VL+ GE GTGKEL A +H R +GPFISL Sbjct: 192 RPHGFVGNSDAMRLVYEQISQVAPSSTTVLLYGESGTGKELAAHAIHSAGKRSKGPFISL 251 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAAL ENL++SELFGHE GAFTGA GRFE ADGGTLFLDE+ ++ Q KLLRV Sbjct: 252 NCAALPENLIESELFGHEKGAFTGASGIRKGRFELADGGTLFLDEVGELSLLTQAKLLRV 311 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ ER+GG++ L V+VR++ ATN DL MV EGTFR DL RL + +PPLRER+ Sbjct: 312 LQERCFERLGGTESLSVDVRIITATNRDLARMVEEGTFRRDLYYRLNVFPIHMPPLRERQ 371 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH-GT 242 +DI +A YF + + + L Y WPGNIREL+NV+ER+V Sbjct: 372 NDIQPLAAYFVDKYAAANGRSGIR-ISLAVMDMLQRYTWPGNIRELENVMERAVLLVGQD 430 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + P A L++ + E+ + +L + K + Sbjct: 431 GLILPQHLPRELHSTHCPFGPAAHKGPVEPYAASGTLQDRLDELERACITDALARHKGHM 490 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AA+ LGLT +KKH I Sbjct: 491 GHAAQALGLTERVMALRMKKHGI 513 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 118/322 (36%), Positives = 176/322 (54%), Gaps = 7/322 (2%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 + ++G + + V E++ +A VL+ GE GTGKEL+A +H LS R PF+ + Sbjct: 143 GLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKELVAHAIHQLSPRKNFPFVVV 202 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 +CAAL+ LL+SELFGHE GAFTGA +R GRFE A GTLFLDE+ + Q KLLR Sbjct: 203 HCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAARGTLFLDEIGEIDLPTQVKLLRA 262 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 + ++RVG ++ + V+VR++ ATN +L MV EG FR DL RL + +PPLRER+ Sbjct: 263 LGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFREDLFFRLNVVRIVMPPLRERK 322 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+A+ F + E + + A + LL Y WPGN+RELK +E V Sbjct: 323 EDIPLLAQAFLAEFAAENGKKIDR-LSPEAMKILLEYDWPGNVRELKMAIEHGVVLCQGE 381 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + D+ RP A E++ + EK L+ +L+ + + Sbjct: 382 EIRPRDLPERIRIPRPLLSAPISVESSEPDCFN------LKEAEKRLILHALRVCQGKKT 435 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AA+ LG++ + +K+ ++ Sbjct: 436 SAAKKLGISRKTLQRKIKQFEL 457 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 117/322 (36%), Positives = 179/322 (55%), Gaps = 12/322 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +N++G +++ V + +A VLI GE GTGKEL+A LH SSR PF+ Sbjct: 223 RPENIIGSSSTMRSVYYHIEQVANSATTVLIRGESGTGKELVAKALHEKSSRRNKPFVKF 282 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAAL +++++SELFGHE GAFTGA GRFE A+GGT+FLDE+ + Q KLLRV Sbjct: 283 NCAALPDSIIESELFGHEKGAFTGALAMRKGRFESANGGTIFLDEIGDISLSTQVKLLRV 342 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E ERVG + +V+VR++ AT+ +L M+ GTFR DL RL + +PPLRER+ Sbjct: 343 LQEREFERVGSQETRRVDVRVIAATSRNLEEMMEAGTFREDLYYRLNVFPIYMPPLRERK 402 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI+++A++F + + + + A + L++Y W GN+REL+N +ER+V Sbjct: 403 CDILMLADHFIEKFAKRMGRKPIR-ISSAAIDMLVSYHWAGNVRELENCIERAVLLAKGQ 461 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + K+ E + L + E+E++ +L++ N Sbjct: 462 SIKAHHLPPTLQKKSRAESSEVA-----------TLEDAIQALEREMIVDALKETGSNLA 510 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 A+ LGLT + +KK+ I Sbjct: 511 EASRRLGLTERKAGLRVKKYGI 532 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 520 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 122/325 (37%), Positives = 187/325 (57%), Gaps = 11/325 (3%) Query: 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 + + ++ +A + VLI GE GTGKE+ A +H S+R G F+++NCAAL Sbjct: 138 IFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYIHENSNRSSGAFVAVNCAAL 197 Query: 69 NENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 ENL++SELFG+E GAFTGA R PG+FE ADGGT+ LDEL P+ +Q KLLRV++ E Sbjct: 198 PENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLDELGEIPLHLQAKLLRVLQEKE 257 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 +ER+GG++P ++NVR++ TN L V+EG FR DL RL ++LPPLRER+ DIM Sbjct: 258 VERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYYRLNVISIELPPLRERKEDIME 317 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLD 248 +A +FA + + T+ A + LL+Y WPGN+REL++ +ER+V Sbjct: 318 LATFFAEKYAQINGKGSCK-MTDDAVKALLDYDWPGNVRELEHTIERAVVLCRDGVISER 376 Query: 249 DIII----------DPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQG 298 ++ + D + + T + +D + E+EL+ +L++ Sbjct: 377 NLFLHGITINQFMTDKQELAAADSYTGCETTEDSVSAGIDFAGTIAEMERELIIKTLKET 436 Query: 299 KYNQKRAAELLGLTYHQFRALLKKH 323 N+ +AA++LG+T R L ++ Sbjct: 437 GGNRTKAADMLGITVRTLRNKLNEY 461 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 520 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 127/321 (39%), Positives = 184/321 (57%), Gaps = 8/321 (2%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 D ++ + + + +A VL+ GE GTGKEL+A +H LS R P I++N Sbjct: 142 TDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKELLARLIHQLSPRSTRPIITVN 201 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C AL E+L++SELFGHE GAFTGA R GRFE ADGGTLFLDE+ M VQ KLLR + Sbjct: 202 CGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGTLFLDEIGELTMPVQVKLLRFL 261 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E +RVGG+ ++ +VR++ ATN DL MV E FR DL RL V+ +PPLRER Sbjct: 262 QEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFREDLYYRLNVVVMSIPPLRERRE 321 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI + ++F + E + G + AR+ L+ Y +PGN+REL+N++ER+V Sbjct: 322 DIPALIDHFLERFAAENGKKIS-GISSEARDLLMKYDYPGNVRELENIIERAVVIARNEI 380 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 ++D+ ED + + LR EK+++Q ++++ +Q R Sbjct: 381 IYMEDLPFR-------EDTLVATSGGVPEEGEGRLRGAIENLEKQMIQDAMEKAGDHQTR 433 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AAE+LGL+ R LKK+ + Sbjct: 434 AAEMLGLSERMLRYKLKKYGL 454 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 520 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 114/328 (34%), Positives = 172/328 (52%), Gaps = 17/328 (5%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + ++G + EV + +AP VLI+GE G GKELIA +H S R + Sbjct: 345 LEYAFPEIVGGSPQMQEVFNLMGQVAPSTATVLILGETGVGKELIAGAIHQASDRAERQM 404 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + +NCAA+ NL++SELFGHE G+FTGA R G+FE AD T+FLDE+ + +Q KL Sbjct: 405 VRINCAAIPANLIESELFGHEKGSFTGATDRRTGKFELADQSTIFLDEIGELSLDLQVKL 464 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E ER+GGS + V+VR++ ATN +L V G FR DL RL + LP LR Sbjct: 465 LRVLQEKEFERIGGSGTISVDVRVIAATNRNLLDEVEAGRFRMDLYYRLNVFPISLPSLR 524 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R +DI L+A +F + + + GF+++ ++ YRWPGNIREL++++ER V Sbjct: 525 DRRADIPLLANFFLERYKMKSGKKIS-GFSQKVMSAMMKYRWPGNIRELEHLIERQVILT 583 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + DI A + + + Q E++ + L+ Sbjct: 584 EGTLIRDLDIP-------------AAHQVMATDGSGQTEIKTIAQNERDHIFSVLRLCNG 630 Query: 301 NQK---RAAELLGLTYHQFRALLKKHQI 325 AA+LLG+ + +KK + Sbjct: 631 KISGKNGAAKLLGVPATTLNSKIKKLGL 658 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 520 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 173/323 (53%), Gaps = 9/323 (2%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 + L+G + + +++ ++ + VL+ GE GTGKEL+A +H S R PFI + Sbjct: 264 AFNKLIGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKELLARAIHQNSPRHMNPFIVV 323 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQ-KRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 NC A+ NL +SELFG+E GAFTGA K PG FE A+GGTLFLDE+ P+ +Q KLLR Sbjct: 324 NCGAIPNNLFESELFGYEGGAFTGADRKGKPGMFELANGGTLFLDEVGEMPIEMQAKLLR 383 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ G RVGGSQ + VNVR++ AT+ +L M+N FR DL RL +++PPLR+R Sbjct: 384 VLQEGTFYRVGGSQSVHVNVRVLAATHRNLEDMINRRQFREDLYYRLNVVALEIPPLRDR 443 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI + F + C++ + L+Y WPGN+RELKN VER V Sbjct: 444 REDIPELVHLFMQEFCQKYDKNI-KKIEPAVMTAFLDYTWPGNVRELKNAVERLVVLTDG 502 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + + + P L ++ EK+L+ +LQQ + N+ Sbjct: 503 DIIDEAALPENLRRNT-------YISLVTSPVSQGKLMNVAVEAEKQLILKTLQQVRGNR 555 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AA +LG+ L++ I Sbjct: 556 SEAARVLGIPRSTLYYKLRQLGI 578 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 113/319 (35%), Positives = 176/319 (55%), Gaps = 15/319 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G++ + E+ + +A + VL+ GE GTGKEL+A +HY PF+ ++CA Sbjct: 144 NMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKELVARGIHYAGQEENLPFVPIDCA 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E LL+SELFGH GAFTGA ++ G+ E A GGTLFLDE+ P+ +Q+K LR ++ Sbjct: 204 AVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGGTLFLDEIGELPLALQKKFLRFLQE 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ R+G ++ +V+VR++ ATN DL A + G +R DL RL +++PPLRER DI Sbjct: 264 KEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWREDLFYRLNVISIEIPPLRERRDDI 323 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +F + + + G T E + Y WPGN+REL+NV+ER+V Sbjct: 324 PPLVNHFLAKYNAQNGKAI-QGMTGEVMEVFMAYDWPGNVRELENVIERAVVLCMGDSIA 382 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + +R P + M+ EK L+ +L++ + NQ AA Sbjct: 383 MSCLPPKLQERSAPAPSTDGVN--------------LMEMEKRLIVQTLEKTEQNQSAAA 428 Query: 307 ELLGLTYHQFRALLKKHQI 325 LG++ Q R +K H + Sbjct: 429 RELGISRKQLRTKMKHHGL 447 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 126/323 (39%), Positives = 188/323 (58%), Gaps = 15/323 (4%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 ++GE+ E+ Q+S +AP D +L+ GE GTGKEL+A+ +H S R +G I Sbjct: 135 SKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATAIHRHSKRKEGALIR 194 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAAL+ENLL+SELFGHE GAFTGA K+ G FERAD GTLFLDE+ + Q K+LR Sbjct: 195 INCAALHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDEIGDMSLTTQVKILR 254 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ GE ERVGG+ ++VNVR++ A++ +L ++ EGTFR DL RL+ + LP LRER Sbjct: 255 VLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRLSVVPLHLPALRER 314 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI ++A +F ++ + + GF++ A + L+ Y WPGNIREL+N +ER V Sbjct: 315 LVDIPILANFFLSLYNKKNRKDI-KGFSQEALDLLMEYPWPGNIRELENSIERGVILCLG 373 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 ++ F+ R P + L R+ EK +Q +L + +N+ Sbjct: 374 EQITAHELPPQFFRNRSPGE--------------LSSRDTLRDVEKRAIQQALARSGFNK 419 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 A+ LG+ ++ + + Sbjct: 420 SATAKQLGIARQTLLNKIRDYGL 442 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 518 bits (1337), Expect = e-146, Method: Composition-based stats. Identities = 124/319 (38%), Positives = 179/319 (56%), Gaps = 9/319 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++ ++ + +VL Q+ +AP D VLI GE GTGKEL+A +H S R F+ +NCA Sbjct: 127 EIVAQSKAMRQVLSQIKRVAPTDSTVLITGESGTGKELVADSIHRHSQRNGRRFVKINCA 186 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ + LL+SELFG+E GAFTGA R PG+FE+A+GGT+FLDE+ P+ Q K+LRV+E Sbjct: 187 AIPDTLLESELFGYEKGAFTGAAARKPGKFEQANGGTVFLDEIGDMPLETQAKILRVLEE 246 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++R+GG +P+ V+VR+V ATN ++ MV +G FR DL RL +QLPPLRER DI Sbjct: 247 KEVDRLGGVRPIPVDVRVVAATNRNIQKMVADGAFREDLFFRLNVFPIQLPPLRERPEDI 306 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + E F + + + A L ++WPGN+REL+N VE S+ Sbjct: 307 PFLIEEFM-KFSSK-----ESTISPPAMHILCAHQWPGNVRELRNAVESSLLFGK-EVVE 359 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + V S LDL + EK +L +L++ Q +AA Sbjct: 360 PEHLPPALAGSMAVPTPAGVL--ISGEDESLDLDFRLQELEKGILVEALKRSDGVQAQAA 417 Query: 307 ELLGLTYHQFRALLKKHQI 325 LLG+ +KK+ I Sbjct: 418 RLLGIKERSLWHRVKKYGI 436 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 518 bits (1337), Expect = e-146, Method: Composition-based stats. Identities = 133/329 (40%), Positives = 182/329 (55%), Gaps = 22/329 (6%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A D ++G++ + + VL++VS +A D VLI GE GTGKEL+A +H S R P I Sbjct: 320 AHNFDEIVGQSPALVSVLQRVSKVAGTDSTVLITGETGTGKELVARAVHSASPRKAKPLI 379 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 LNCAAL +L++SELFGHE GAFTGA R PGRFE ADGGTLFLDE+ + Q KLL Sbjct: 380 KLNCAALPTHLVESELFGHEKGAFTGAVARKPGRFELADGGTLFLDEVGELSLEAQAKLL 439 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ E ERVGG+ P++V+VR++ ATN DL +V EG FRADLL RL V+LP LRE Sbjct: 440 RVLQEREFERVGGTAPVKVDVRVIAATNRDLAQLVKEGAFRADLLYRLNVFPVRLPALRE 499 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI L+ +F + + + + + L+ Y WPGNIREL+NV+ER+ Sbjct: 500 RPGDIPLLVRFFVTKFAGRLGKRI-ERVSGDTLDALVGYDWPGNIRELENVIERAAILSD 558 Query: 242 TS--DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGK 299 D + + T + + E + ++ L Q Sbjct: 559 GPELVIDPDVLPV----------------TRGGAAPAGAGGQSLVAVEADHIRSVLAQTG 602 Query: 300 YNQ---KRAAELLGLTYHQFRALLKKHQI 325 + AA +LGL + R+ +KK I Sbjct: 603 WVIEGPNGAATVLGLHPNTLRSRMKKLGI 631 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 518 bits (1337), Expect = e-146, Method: Composition-based stats. Identities = 117/323 (36%), Positives = 184/323 (56%), Gaps = 11/323 (3%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 +N++G + +++ + VLI GE GTGKELIA +H S+R PF+ Sbjct: 353 SSFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHNNSNRKNKPFVR 412 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCA++ ENLL+SELFG+E GAFTGA + PG+F AD GT+FLDE+ P+ +Q KLLR Sbjct: 413 VNCASIPENLLESELFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLR 472 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E+E VGG P ++VR++ ATN +L M+ +G+FR DL RL + LPPLRER Sbjct: 473 VLQEREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSFREDLYYRLNVLGINLPPLRER 532 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + DI +AE+F ++ +++ + G + A L+ Y WPGNIREL+N++ER++ Sbjct: 533 KEDIPELAEHFITKLNKKLHKTIL-GIKQDALNLLIEYSWPGNIRELENIMERAINLCDG 591 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + + LP + EK++++ ++++ K + Sbjct: 592 DYIDSSYLPSYLKPVESKSFNLNIDIDHILPF---------EEYEKQIIEAAMKKYK-SF 641 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 +A + LGLT+ KK+ I Sbjct: 642 NKAGKALGLTHRTVSLKCKKYNI 664 >UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W352_DYAFD Length = 693 Score = 518 bits (1336), Expect = e-146, Method: Composition-based stats. Identities = 121/328 (36%), Positives = 178/328 (54%), Gaps = 18/328 (5%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + + + ++G + +V +S +A + VL++GE GTGKELIA +H+ S+R Sbjct: 373 LNKDFEEIVGGGEAMQQVYRLISLVAESNATVLLLGETGTGKELIAKAVHHTSARKDKLM 432 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I +NCAA+ +L++SELFGHE GAFTGA +R G+FE A+ TLFLDE+ PM Q KL Sbjct: 433 IKVNCAAMPASLIESELFGHERGAFTGAVERRIGKFELANNSTLFLDEVGEMPMETQVKL 492 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E+ERVGG +++NVR++ ATN DL A V G FR+DL RL + LPPLR Sbjct: 493 LRVLQEKEMERVGGKTTIKLNVRIIAATNRDLEAEVKAGRFRSDLYYRLNVFPINLPPLR 552 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R DI +A +F + + I + A L Y WPGN+REL++++ERSV Sbjct: 553 DRREDIESLAGFFLAKFSKSIGKKTVK-LSANALRQLQAYLWPGNVRELEHLIERSVILA 611 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + A TT T+ DL Q E+ + L++ Sbjct: 612 TDPMIREFFLP------------QATGATTDEHTMQSDL--TLEQVERMHIIQVLRRCGG 657 Query: 301 NQK---RAAELLGLTYHQFRALLKKHQI 325 AAE+LG+ + + ++K I Sbjct: 658 KISGIGGAAEILGIPGNTIHSKMRKLGI 685 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 518 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 119/326 (36%), Positives = 175/326 (53%), Gaps = 21/326 (6%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + D ++ ++ +F +VL V +AP + VLI+GE GTGKEL+A +H LSSR P + Sbjct: 177 KNFDEIVTQSKAFQKVLRSVEQVAPTNTTVLILGESGTGKELLARAVHNLSSRKNKPLVK 236 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAAL L++SELFGHE GAFTGA + GRFE ADGGT+FLDE+ P+ +Q KLLR Sbjct: 237 INCAALPATLIESELFGHEKGAFTGATAQKVGRFELADGGTIFLDEIGEMPLDLQAKLLR 296 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ GE ERVG ++ ++VNVR++ ATN DL EG FR DL RL+ + PLR R Sbjct: 297 VLQEGEFERVGSTKTMKVNVRVIAATNRDLEIESAEGRFREDLYYRLSVFPIVSLPLRTR 356 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + DI L+ +F + ++ + +TL +Y WPGNIREL+N+V+R++ Sbjct: 357 KEDIPLLVRHFCAKHGADMGKTIDT-IPATVLDTLTDYHWPGNIRELENLVQRALIMSPG 415 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + D + + + E+ + L+ + Sbjct: 416 RTLVIGDWLRKKPLANQKATLM-----------------TMEEAERAHIISVLELTHWKV 458 Query: 303 K---RAAELLGLTYHQFRALLKKHQI 325 AA LL + + +KK I Sbjct: 459 SGDNGAARLLDMIPTTLDSRMKKLGI 484 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 119/318 (37%), Positives = 180/318 (56%), Gaps = 5/318 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++GE++ EV + + +A VL+ GE GTGK ++A +HY S R + PFI +NC + Sbjct: 159 IVGESSKIQEVYKIIGRVANSKATVLLTGESGTGKGMVAKAIHYASDRREKPFIQVNCGS 218 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E LL+SE+FGHE GAFT A + PG+FE A+GGTLFLDE+A +Q KLLRV++ Sbjct: 219 IPEGLLESEIFGHEKGAFTSAFFQKPGKFELAEGGTLFLDEIAEMSPNLQVKLLRVLQEK 278 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ERVGG++ NVR++ ATN DL ++E +FR DL RL + LPPL ER DI+ Sbjct: 279 EFERVGGTKTFHTNVRIIAATNRDLNKEISEKSFRKDLYYRLNVVSICLPPLCERGEDIV 338 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A+YF + E+ F + NY WPGNIREL+N VE ++ T Sbjct: 339 LLADYFLKRFSVEVGRNGM-FFAPEVLDIFRNYSWPGNIRELENAVEHAIIMSNTRVILP 397 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 +++ + D + S LRE ++ EK + ++++ N+ +AA+ Sbjct: 398 ENLPLSIKVEDVEADGTIILGDDSF----KPLREVLLEVEKRHISEAIERTGGNRTQAAK 453 Query: 308 LLGLTYHQFRALLKKHQI 325 LL ++ + ++ I Sbjct: 454 LLQISRRALLYKINENNI 471 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 132/340 (38%), Positives = 178/340 (52%), Gaps = 19/340 (5%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 DN++G + + EV QV AP +L+ GE GTGKE+IA +HYLS R GPFI + Sbjct: 199 KLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVIARAIHYLSPRKDGPFIKV 258 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAAL+E LL+SELFGHE GAFTGAQ GRFE A GGTLFLDE+ Q KLLRV Sbjct: 259 NCAALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLFLDEIGEISPAFQAKLLRV 318 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E ERVGGS+ ++V+VRLV ATN DL V +G FRADL R+ + +PPLRER Sbjct: 319 LQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINVVSIFIPPLRERR 378 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI + E+F + E + + + +A + ++N WPGN+REL+N VER+ Sbjct: 379 EDIPYLVEHFLEKFRVENQRAMV-AMSPQAMKVMMNCYWPGNVRELENCVERTATMMRGD 437 Query: 244 DYPLDDIIID----PFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQ------------- 286 K L + + Sbjct: 438 LITEVHFSCQQNKCLTKVLHEPGQQQPVVVVPLERISAPYGAIFAEWDGQGQATGAAPPT 497 Query: 287 -EKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 E+E L +++Q + Q +AA L ++ Q L+K I Sbjct: 498 SERERLIWAMEQCGWVQAKAARALNISPRQMGYALQKFNI 537 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 126/321 (39%), Positives = 180/321 (56%), Gaps = 10/321 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 ++G + E+ + + +A VLI GE GTGKEL+A LH S R +GPF+ LN Sbjct: 162 FGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRREGPFVKLN 221 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAAL+E +L+SELFGH GAFTGA + PGRFE A GGTLFLDE+ +Q KLLRV+ Sbjct: 222 CAALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSMQVKLLRVL 281 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E ERVGG++ ++V+VR++ ATN DL + EG+FR DL RL V LPPLRER+ Sbjct: 282 QEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPLRERQG 341 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D+ L+ + F + E+ + G T A + LLNY +PGNIREL+N++E + S Sbjct: 342 DLPLLIQSFIERYNAELGKNI-QGLTSEAMKVLLNYHYPGNIRELQNIIEHAALLCNDSR 400 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 L + D + + ++ P EKEL++L++ + N Sbjct: 401 IDLRHLPGDLLPAQSQSSFLELAMMEENP---------VRYVEKELIRLAMAESGGNVSE 451 Query: 305 AAELLGLTYHQFRALLKKHQI 325 A L + LK+ ++ Sbjct: 452 VARKLSMGRSTLWRRLKEMKL 472 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 517 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 133/339 (39%), Positives = 186/339 (54%), Gaps = 17/339 (5%) Query: 3 EYKDNLL-GEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + + ++ G + + V+E V +A + VL+ GE GTGKEL+A +H SSR + P + Sbjct: 697 DVQRGMIKGNSPAIRSVMETVRKVANSESTVLVRGESGTGKELLAQAVHENSSRHEKPLV 756 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NCAAL+ +LL+SELFGH GAFTGA + GRFE A+GGTLFLDE+ + Q KLL Sbjct: 757 RVNCAALSPSLLESELFGHVKGAFTGAHEDRVGRFELANGGTLFLDEIGDISLDTQVKLL 816 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ ERVGGS+ L V+VRL+ AT+ +L + EG FR DL RL + LPPLRE Sbjct: 817 RVLQERAFERVGGSETLHVDVRLITATHQNLEQRITEGLFREDLYYRLNVISITLPPLRE 876 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI +A YF + + + A E L WPGNIR+L+NV+ER+V Sbjct: 877 RREDIFELAFYFLKRTANRLGKRIS-HIDPDAIEALERAPWPGNIRQLENVIERAVVLAE 935 Query: 242 TSDYPLDDIIIDP--FKRRPPEDAIAVSETTSLPTLPLDLREF-------------QMQQ 286 + + D+ D K+R P S T + L E Q Sbjct: 936 SEVITMKDLPADLLEQKKRLPARVFETKNVRSDTTRRIPLSEVEVITFPGSQNHVDQRLT 995 Query: 287 EKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 E E L+L+L + N+ +AA LLG+ + + LKK+ I Sbjct: 996 EPEQLKLALAECDGNKAQAARLLGMPRSTYYSKLKKYDI 1034 >UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Deltaproteobacteria RepID=Q3A5A0_PELCD Length = 470 Score = 516 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 121/327 (37%), Positives = 177/327 (54%), Gaps = 4/327 (1%) Query: 2 AEYKDNLLGEANSFLEVLEQVSH-LAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 ++ ++G+A ++ + A D VL++GE GTGKEL+A +H R + F Sbjct: 141 SDGFHGIIGQAPKMRQLFNNIEKLAAEGDSSVLVLGESGTGKELVARAIHAHGPRSRKNF 200 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + +NCAA+ E+LL+SELFG+ GAFTGA + GR + A+GGTLFLDE+ +Q KL Sbjct: 201 VPVNCAAIPEDLLESELFGYVKGAFTGATQAKMGRLQYAEGGTLFLDEIGDMKASLQAKL 260 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E E VGG +P+ V+VR+V AT+ DL V EG FR DL RL +Q+PPLR Sbjct: 261 LRVLQEKEFEPVGGVKPVSVDVRIVAATHRDLEKSVAEGRFREDLYYRLNVIPLQIPPLR 320 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R+ DI L+ E F R+ K F GF++ A + L Y WPGN+REL+N+V+R Sbjct: 321 KRKEDISLLIERFVGIYNRK-KKNPFKGFSDDALQALKQYPWPGNVRELENLVQRMSIFF 379 Query: 241 GTSDYPLDDIIIDPFK--RRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQG 298 D+ + + SL +D + E +L+ +L Sbjct: 380 AGQSVSRKDLPEKYQGCDEAQQQPVQEQENSISLEDGGVDFNLLVNRFENQLILQALNVT 439 Query: 299 KYNQKRAAELLGLTYHQFRALLKKHQI 325 N++ AA+LL L LK+ I Sbjct: 440 GGNKREAAKLLNLKRTTLIEKLKRKNI 466 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 131/320 (40%), Positives = 180/320 (56%), Gaps = 12/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++L ++ EVLE + +A + VL+ GE GTGK ++A +H+ S R GPFI++NC Sbjct: 219 SSILSNSSRMQEVLEMIHRVAASNATVLLRGESGTGKSMVARAVHHNSKRAAGPFITVNC 278 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +AL E LL+SELFGHE GAFTGA + GRFE A+GGTLFLDE+ VQ KLL V++ Sbjct: 279 SALPETLLESELFGHERGAFTGAHETRKGRFELAEGGTLFLDEIGELSTAVQVKLLSVVQ 338 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E +RVGGS+PL+ +VRL+ ATN DL V EGTFR DL RL + LPPLRER +D Sbjct: 339 DREFQRVGGSRPLKCDVRLITATNKDLEKAVAEGTFREDLYYRLNVFPIYLPPLRERRTD 398 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I+L+AE+F + E + + A + L Y WPGN+REL+N +ER+V Sbjct: 399 ILLLAEFFLEKFASENDKNI-RRISTPAIDLLTQYHWPGNVRELQNCLERAVLICDEDTI 457 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + S + P E+EL+ +L++ NQ RA Sbjct: 458 KSYHLPPTLQ-----------SSDSLREVSPSSFTAAVESFERELIIDALKKTDGNQTRA 506 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LL + +KK+ I Sbjct: 507 AALLETSLRIINYKIKKYAI 526 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 115/323 (35%), Positives = 175/323 (54%), Gaps = 17/323 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++G++++ +V + + +A D VLI+GE GTGKEL+A +H LS R I +NC Sbjct: 236 SEMVGQSSAIRQVFDLIEQVAASDSTVLILGETGTGKELVARSIHNLSPRKDKLMIKVNC 295 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL NL++SELFGHE G+FTGA +R G+FE A GTLFLDE+ +Q KLLR ++ Sbjct: 296 AALPANLVESELFGHEKGSFTGASERRIGKFELAHNGTLFLDEIGELSPDIQVKLLRALQ 355 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ER+GG ++ NVR++ ATN +L V EG FR+DL RL + +PPLR R+ D Sbjct: 356 EKEIERIGGKGVIKTNVRIIAATNRNLMKEVEEGNFRSDLYYRLNVFPITIPPLRNRKED 415 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I ++ +F + ++ + G T+ +TL Y WPGNIREL++++ERS+ + Sbjct: 416 IQALSAHFIQHLAKKTGRQV-KGMTKGVLKTLQEYPWPGNIRELEHLIERSILLSRGNII 474 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK-- 303 + V L + + + E++ + L+ K Sbjct: 475 NEVHLP-------------KVEHMEDLTSNKEIRIKTIFENERDHILNILKLCKGKISGN 521 Query: 304 -RAAELLGLTYHQFRALLKKHQI 325 AAELL + + +KK I Sbjct: 522 GGAAELLSIPATTLNSKIKKFNI 544 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 136/321 (42%), Positives = 181/321 (56%), Gaps = 8/321 (2%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 N++G++ V + + ++ VLI GE GTGKEL+A +HY S R PF+++ Sbjct: 165 FANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELVARAIHYNSDRHDRPFVAIY 224 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A+ ENLL+SELFGHE GAFTGA ++ G FE ADGGTLFLDE+A P M+Q KLLRVI Sbjct: 225 CGAIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTLFLDEIAELPPMMQVKLLRVI 284 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E +VGG++ L+V+VRLV ATN DL V E FR DL RL V LPPLR+R Sbjct: 285 QEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDLYYRLNVIQVGLPPLRDRRE 344 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+ +F ++ + L+Y WPGNIREL+N VER V G + Sbjct: 345 DIPLLVSHFLQKLTPGF----STTIPDGVMRRFLDYHWPGNIRELENTVERCVVLGGKGE 400 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 D + + T LP LDL ++ EK++L +L + +KR Sbjct: 401 ITEDSLPPHMLCI----SGTGDQQLTELPEEGLDLDDYLGAIEKDILLKALDRTGGVRKR 456 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AAELL +T+ R L K I Sbjct: 457 AAELLHITFRSIRYRLAKFGI 477 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 129/320 (40%), Positives = 186/320 (58%), Gaps = 10/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D ++G++ L+VL+ V P + VLI GE GTGKELIA +HY S R PFI++NC Sbjct: 140 DGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIARAIHYNSPRKDKPFIAINC 199 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ + L++SELFG+E GAFTGA R G E AD GTLFLDE+A P+ Q KLLRV++ Sbjct: 200 AAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFLDEIAEIPLSTQSKLLRVLQ 259 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ ++G +V+VR++ ATN +L V + FR DL RL V++PPLRER+ D Sbjct: 260 DKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLYYRLKVITVEIPPLRERKED 319 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + +F + +E + G E+A E LLNY WPGNIREL++V+ER++ Sbjct: 320 IPDLVHFFIEKYSKEFGKRVN-GIEEKALEALLNYSWPGNIRELESVIERAIIICEKDKI 378 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 +DI + P +P ++ + EKEL++ +L + + +A Sbjct: 379 TFNDIQDELRVITPK-----NLFDIDIPDEGINY----EELEKELIKKALIKSNFVIAKA 429 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LLG++Y F LKK + Sbjct: 430 ARLLGMSYDTFWYRLKKFGL 449 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 127/320 (39%), Positives = 179/320 (55%), Gaps = 12/320 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +L+ ++ +V+E V +AP V I GE GTGKE+++ +H LS R PFI++ Sbjct: 139 GSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSRAVHNLSLRRDKPFIAI 198 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCA++ L++SELFGHE GAFTGA +R PG FE A GGTLFLDEL P+ +Q KLLRV Sbjct: 199 NCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLFLDELGEIPIELQAKLLRV 258 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 +E G+L R+GG ++V+VR++CATN DL + G FR DL RL + LPPLRER Sbjct: 259 LEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDLYFRLNVFQIHLPPLRERR 318 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 D+ ++ ++F + + + G A E L NY WPGNIREL+N VER+V Sbjct: 319 DDVPILVQHFVDKFRGDSGKRVS-GVHPEAMEVLKNYDWPGNIRELRNAVERAVILCDGE 377 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + + D + P T L E+E + SLQ+ N+ Sbjct: 378 LITREHLPPDMAGKSPERH-----------TFRLPFGLSLDAVEREYILGSLQRNGNNKA 426 Query: 304 RAAELLGLTYHQFRALLKKH 323 R AE+LG++ L ++ Sbjct: 427 RTAEVLGVSEKTLYNKLNRY 446 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 124/321 (38%), Positives = 180/321 (56%), Gaps = 2/321 (0%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 ++L+G++ V + V ++ VLI GE GTGKEL+A +HY S+R PF++ Sbjct: 143 SQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVA 202 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NC+AL E LL+SELFGH G+FTGA G FE ADGGT+FLDE+ P Q +LLR Sbjct: 203 VNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVRLLR 262 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ GE++RVG ++P++V+VR++ AT+ DL +G FR DL RL + LPPLR+R Sbjct: 263 VLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDR 322 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 D+ L+A +F + + G + RA E L RW GN+REL+NV+ER+V G Sbjct: 323 PEDVPLLAHHFLKLYASKADKKV-TGISPRAMEALTCNRWTGNVRELENVIERAVVLTGN 381 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 ++D+ P+ + V LP R E+ L L++ N Sbjct: 382 EVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAK-RLAMRAFERRYLSALLEKNNQNV 440 Query: 303 KRAAELLGLTYHQFRALLKKH 323 AA G+ FR LLK++ Sbjct: 441 SSAARAAGVDRSNFRRLLKQY 461 >UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C7PBZ0_CHIPD Length = 481 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 122/326 (37%), Positives = 178/326 (54%), Gaps = 17/326 (5%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + ++G + V E + +APLD VL++GE GTGKE +A+ +H+LS R PF+ Sbjct: 164 PNFEGIIGSSIPMQRVFELIRQVAPLDTSVLVLGETGTGKEGVANCIHHLSPRKAKPFVK 223 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAAL +L++SELFGHE GAFTGA ++ G+FERADGGT+FLDE+ P +Q KLLR Sbjct: 224 VNCAALPTHLIESELFGHEKGAFTGALEKRIGKFERADGGTIFLDEIGDMPADLQVKLLR 283 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E+ER+GG+ P++VNVR++ ATN +L + EG FR DL RL + L LRER Sbjct: 284 VLQEKEIERIGGNGPIKVNVRIIAATNRNLEKEIAEGRFRLDLYYRLHVFPIMLSALRER 343 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+ +F + A L++Y WPGN+REL+N++ERSV Sbjct: 344 RDDIPLLIAHFIRLYASATGKGVS-DIAPAALRQLMDYAWPGNVRELQNLIERSVLLSRE 402 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 S + + K + ++ E+E + L++ + Sbjct: 403 SIIREVILPVSVKKETTVVSTETDI-------------KTIVELEREHILTVLKKCNHKI 449 Query: 303 K---RAAELLGLTYHQFRALLKKHQI 325 AAELL L + +KK I Sbjct: 450 SGPGGAAELLNLPPSTLASKMKKLGI 475 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 515 bits (1329), Expect = e-145, Method: Composition-based stats. Identities = 118/326 (36%), Positives = 182/326 (55%), Gaps = 16/326 (4%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + DN++G+++ + + A + VLI GE GTGKEL A +H S R G FI Sbjct: 254 SYSFDNIIGKSDKINKTKDLAKKAAKTNSNVLIRGESGTGKELFAHAIHMESERVYGNFI 313 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKL 120 LNCAA+ +LL+SELFG+E GAFTGA+K G+FE ADGGT+FLDE+ P+ +Q KL Sbjct: 314 KLNCAAIPRDLLESELFGYEGGAFTGAKKEGKIGKFELADGGTIFLDEIGDMPLHMQAKL 373 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E+ER+G ++ +++VR++ ATN DL M+ EG FR DL RL V +PPLR Sbjct: 374 LRVLQEREVERIGATRSKKIDVRVISATNRDLEKMIKEGEFREDLYYRLNVVTVNIPPLR 433 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI +++EY ++ +++ F++ A L+NY+W G +R+L+N++ER+V Sbjct: 434 ERREDIKILSEYLLEKISKKLGKK-TKSFSKEAMSCLMNYKWEGGVRQLENIIERAVNLV 492 Query: 241 G-TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGK 299 + + DL + Q EK+++ +L Sbjct: 493 EHNEMIEPKHFPGNIVSNK-------------YIVEDSDLNKLINQVEKDIILETLIYCN 539 Query: 300 YNQKRAAELLGLTYHQFRALLKKHQI 325 +N+ AA+ L ++ + KH I Sbjct: 540 WNKTLAAKKLNISRTSLYEKIAKHNI 565 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 515 bits (1329), Expect = e-145, Method: Composition-based stats. Identities = 124/321 (38%), Positives = 185/321 (57%), Gaps = 10/321 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 DN++G + + E+ + + P VL+ GE G GK+LIA +H+ S R P + +N Sbjct: 138 FDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLIARAIHFHSPRKDRPLVKIN 197 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A+ ENL++SELFG+E GAFTGAQ PG+FE+AD GT+FLDE+ P +Q KLLRV+ Sbjct: 198 CTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVFLDEIGDVPAAIQVKLLRVL 257 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E ER+G + ++VRLV ATN DL A + +GTFR DL RL + +PPLRER+ Sbjct: 258 QEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDLYYRLNVVPLNIPPLRERKV 317 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI +A +F ++ + + T+ E L+ Y WPGN+REL+NV+ERS+ + Sbjct: 318 DIPFLANHFVHKLAPDTGCQV-ESITDAGMEKLMAYHWPGNVRELENVIERSLVMATGTQ 376 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 DDI ++ R + L Q E+E+++ +L++ N+ + Sbjct: 377 LDADDIKLESAPRPRAQGNDNHFLPEGL---------SLDQYEQEIIREALRRADGNKSQ 427 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA LLGLT + R L + + Sbjct: 428 AARLLGLTRNALRYRLTQMGL 448 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 515 bits (1328), Expect = e-145, Method: Composition-based stats. Identities = 127/322 (39%), Positives = 183/322 (56%), Gaps = 14/322 (4%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 + ++G + V E ++ +AP VLI GE GTGKELIA +H S R + P+I L Sbjct: 198 KQSEIIGYSPPIKRVSEIIAKIAPSSATVLIRGETGTGKELIAKAIHNYSPRKEKPYIKL 257 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAA+ ENLL+SELFGHE GAFT A++ GRFE ADGGTLFLDE+ + +Q K+LR+ Sbjct: 258 NCAAIPENLLESELFGHEKGAFTDARETRKGRFELADGGTLFLDEVGDLSLPLQAKILRI 317 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E ERVGGS+ ++V+VR+V ATN DL MV G FR DL RL + PPLR+R Sbjct: 318 LQEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLFYRLNVIPIFSPPLRDRG 377 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 D++L++ YF + C+ L T +A E L +Y WPGNIREL+N +ER V + Sbjct: 378 DDVILLSRYFLERFCKRHAKEL--HLTPKAEELLKHYDWPGNIRELENSIERLVLLAPSE 435 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + + T + R + E+ + +L++ + Sbjct: 436 SIDEE------------VVLSVLPGRVHGYTKEVKTRADLEELERSAIIKALKECHGIKL 483 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA+ LG+T Q ++K++I Sbjct: 484 QAAKKLGITNRQIGYKIQKYEI 505 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 182/323 (56%), Gaps = 15/323 (4%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 N++G ++ V + + +LA + VLI GE GTGKEL+A LH+ SR PF+S Sbjct: 274 NQFHNIIGASHKMQAVYQLLENLADFETTVLITGESGTGKELVAKALHHTGSRAFKPFVS 333 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NC+AL ENLL+SELFGH GAFTGA + + GRF+ A GTL LDE+ +Q KLLR Sbjct: 334 VNCSALAENLLESELFGHVKGAFTGAIRDYQGRFQAAHTGTLLLDEIGDISPRIQLKLLR 393 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E ERVG QP++V+VR++ TN DL V G FR DL RL ++LPPLRER Sbjct: 394 VLQEREFERVGDVQPIKVDVRVIACTNQDLKEKVGLGEFREDLYYRLNVMEIKLPPLRER 453 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+A++F + ++ + + PG +++ +NY WPGN+REL++ +ER+ Sbjct: 454 REDIPLLADHFTARFEKKFNITI-PGVSDKVMNAFMNYHWPGNVRELEHSIERATVLCRD 512 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 L+ I + + L++ E + +L++ +N+ Sbjct: 513 KMISLEHIPGEIAEAYSLSGPR--------------LKKQPAADEPNEIIDALKRTGWNK 558 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 +AA LLG++ ++K+ I Sbjct: 559 AKAARLLGVSRKTIYRKIEKYGI 581 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 127/342 (37%), Positives = 191/342 (55%), Gaps = 20/342 (5%) Query: 3 EYKDNL-LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 E ++ + +G + + + + + + +AP D VLI GE GTGKE++A + S R FI Sbjct: 136 EDEEGILVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVAREFYRRSPRRSQAFI 195 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NCAA++ENL++SE FGHE GAFTGA +R GRFE A GTL LDE++ P +Q KLL Sbjct: 196 KVNCAAISENLIESEFFGHERGAFTGATERREGRFELAHQGTLLLDEVSEIPANLQAKLL 255 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ E ERVGGS+ ++VNVR++ +N DL V +G FR DL RL V +P LRE Sbjct: 256 RVLQEREFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLYYRLNVFPVHVPALRE 315 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI L+A++F + R+ + + GF + AR L+ YRWPGN+REL+N VER+V Sbjct: 316 RPEDIALLADHFLRRFARKHGVKV-TGFADSARAALIGYRWPGNVRELQNTVERAVILSE 374 Query: 242 -TSDYPLDD--IIIDPFKRRPPEDAIAVSETTSLPTLPLDLREF---------------Q 283 + D P + E +LP + Sbjct: 375 TGRAVTAAALGLPGDFLPGELPLEPAPAPEVPALPVAAVAEEPAGASPTVTDSHGQVLKL 434 Query: 284 MQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + EK+ ++ +L+Q N+ +AA LG++ R L+++++ Sbjct: 435 DELEKQAIRAALRQTGGNRTQAAAELGISIRTLRNKLQEYRL 476 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 118/321 (36%), Positives = 175/321 (54%), Gaps = 11/321 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 ++G + EV ++ +A + VLI GE GTGKEL+A +H SSR +GP I +N Sbjct: 187 DSEIIGHSRVMQEVFGLIAQVADSNTTVLINGETGTGKELVARAIHDRSSRCKGPLIQVN 246 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAA+ + L++SELFGHE GAFTGA GRFE A GGT+FLDE+ Q KLLRVI Sbjct: 247 CAAMPDTLIESELFGHEKGAFTGALHARRGRFEEAHGGTIFLDEVGELSAAAQAKLLRVI 306 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + + + +G S+ + V+VR++ ATN +L V G FRADL RL + LPPLRER S Sbjct: 307 QEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGHFRADLYYRLNVFPIYLPPLRERGS 366 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI+L+A+YF ++ + + + + E L++ WPGN+REL+N +ER+V Sbjct: 367 DIILLADYFVLKYNKIMGKSV-KRISNAVLEAFLSHSWPGNVRELENCIERAVLLATGDS 425 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + R + + QE+ ++ +L++ NQ + Sbjct: 426 IETLHLPPSLQIRSREGEKKESGK----------FNAMIESQERAMIVDALKESHGNQSQ 475 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA +LG T + ++K I Sbjct: 476 AARILGTTKRIIQYKIQKFGI 496 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 116/322 (36%), Positives = 172/322 (53%), Gaps = 17/322 (5%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 D ++G++ + EV + ++ + D VLI GE GTGKELIA +HY S R PF+ + Sbjct: 188 GFDEIVGQSPAMREVFDTMARVLDTDATVLIEGESGTGKELIARAIHYNSERKDKPFVVV 247 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 C +L + LL+SELFG++ GAFTGA G FE ADGGT+FLDE+ +Q LLRV Sbjct: 248 FCGSLPDELLESELFGYKKGAFTGALSDKKGLFEVADGGTVFLDEVGDLSPRMQTALLRV 307 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ GE+ RVG +Q +V+VR++ ATN L +V +G FR DL RL + +PPLR R Sbjct: 308 LQEGEIRRVGDTQVRKVDVRVISATNKPLRELVQQGKFREDLYYRLNTIQITVPPLRHRR 367 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+A +F + + K GFT A E L Y WPGN+REL+N +ER+V Sbjct: 368 GDIPLLAHHFLDKYAVK-KRAHIKGFTPEALELLERYHWPGNVRELENTIERAVVLARGE 426 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 +D+ + P + + E+ ++ +L++ N Sbjct: 427 LITPEDLRLPDTDGADPFEPDLP----------------LKEVERRVVLRTLKRHGGNIS 470 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 A +LG++ LK+ + Sbjct: 471 ETARVLGVSRRWLHYKLKEWDV 492 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 514 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 133/323 (41%), Positives = 192/323 (59%), Gaps = 2/323 (0%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 N++G + S +E L V + D VL+ GE GTGKEL++ +HY S R GPF++L Sbjct: 149 NFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELVSRAIHYNSDRKCGPFVAL 208 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAA+ ENLL+SELFG+E GAFTGA+K GRFE A GGT FLDE++ VQ K+LR+ Sbjct: 209 NCAAIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGGTFFLDEISEMSAAVQAKVLRI 268 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 IE ELER+GG+ ++V+VR++CATN DL MV EG FR DL R++ + LP LRER Sbjct: 269 IESKELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDDLYYRISVFPIMLPALRERS 328 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI+ ++++F ++ + + L+ ++W GNIREL+N++ER+V Sbjct: 329 GDIIPLSKHFVNHFSAKMGKTPI-VLSSEVEKILIKHKWEGNIRELQNIIERAVILCKNG 387 Query: 244 DYPLDDIIIDPFKR-RPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + PPE +S+ S+ EK+L+ +L++ K N Sbjct: 388 VIRTEHLPTSIVHGYTPPELNENISQNNSVNFDIPPNGLSLDDLEKQLVAKALERSKNNI 447 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 +AA+LLGLT FR L+K+ I Sbjct: 448 TKAAKLLGLTRGTFRYRLQKYGI 470 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 126/321 (39%), Positives = 183/321 (57%), Gaps = 12/321 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DNL+G+++ L + E V +A VLI GE GTGKEL+A LH S+R GPF+ +NC Sbjct: 280 DNLIGKSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLAHSLHVGSNRCLGPFVKVNC 339 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ ENLL+SELFG+ GAFTGA+K G+FE+A+GGT+FLDE+ P+++Q KLLRV+ Sbjct: 340 AAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQANGGTIFLDEIGDMPLLMQAKLLRVL 399 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ER+G ++ V VR+V ATN L M+ + TFR DL RL +Q+P LRER Sbjct: 400 QEKEIERLGDNRARHVEVRVVAATNRPLEQMIADNTFREDLYYRLNVVTLQIPSLRERID 459 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D+ + EYF + L + G + A E NY WPGN+REL+NVVER+ Sbjct: 460 DLKDLVEYFLAKYNHAFGLNI-TGLSADALELFENYNWPGNVRELENVVERAFNLVDGHI 518 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + + K + ++ L Q EKE + +L N+ + Sbjct: 519 IDVMHLPPYLQKFGKSK----------RHSINKSLPSLLEQVEKEAIADALSVTNGNKMQ 568 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA++LG++ + ++ I Sbjct: 569 AAKILGISRAWLYKKIAQYGI 589 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 124/320 (38%), Positives = 190/320 (59%), Gaps = 17/320 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + +G++ + + + + + +A D VL++GE G GK LIA +H LS R PFIS+NC Sbjct: 195 EGFVGKSEAIITLKDTIQKIAMTDSTVLLLGESGVGKTLIAKAIHTLSERKDKPFISVNC 254 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ E LL++ELFG+E GAFTGA G+FE A+GGT+FLDE+ P+ Q KLLRVI+ Sbjct: 255 AAIPETLLEAELFGYEKGAFTGAVHSKKGKFELANGGTIFLDEIGELPLQSQSKLLRVIQ 314 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ELE++G + + VNVR++ +TN DL +MV G FR DL RL +++P LRER+ D Sbjct: 315 EKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEFREDLYYRLNVIPIRVPALRERKED 374 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ ++F + + K + + A E L+NY WPGNIREL+N++ER V + Sbjct: 375 IPLLVKHFLDKFNKHYKKHIN--IEKEAMEALVNYNWPGNIRELENLIERLVVINNKD-I 431 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 +D+++ + + L D+ EKE ++ +L++ Y + +A Sbjct: 432 TKEDVLL--------------ATKINSNKLQTDIPSIIESTEKEAIKKALEKCGYVKSKA 477 Query: 306 AELLGLTYHQFRALLKKHQI 325 A++LGLT Q +KK+ I Sbjct: 478 AKILGLTLRQLDYRIKKYNI 497 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 111/323 (34%), Positives = 180/323 (55%), Gaps = 9/323 (2%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + + ++ ++ E+ +++ +A D PVLI GE GTGKELIA+ + S R + P+I Sbjct: 138 DEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIANAIQKQSLRKEKPYIK 197 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAA+ E L +SELFG+E GAFTGA + G+FE A+GGT+F DE+ P+ +Q KLLR Sbjct: 198 INCAAIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIFFDEIGDMPLSLQAKLLR 257 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 VIE G + R+GG +P+++NVR + AT+ +L ++ FR DL R+ + +PPL+ER Sbjct: 258 VIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDLFYRINVMPIAIPPLKER 317 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + DI ++ E F + + A E LL+Y +PGN+RELK+ +ER++ Sbjct: 318 KEDIPVLIEKFLKIFSEKYGKQNIT-ISPSAYEALLSYDYPGNVRELKHAIERALLLSKD 376 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + + + +S L+E EK L+ +LQ+ + + Sbjct: 377 GVIDIKHLPEEFSPLSSFQKKCFISN--------FSLKECIENFEKNLIIKALQECGWKK 428 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AA+ LG++ +K + I Sbjct: 429 TEAAKKLGISRKALWEKIKFYGI 451 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 124/318 (38%), Positives = 180/318 (56%), Gaps = 12/318 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + EV + +A D VLI GE GTGKEL+A +H SSR PF+++NCAA Sbjct: 149 IIGISPPMEEVFRVIDRVADTDATVLITGESGTGKELVARAIHNRSSRRAAPFVAINCAA 208 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + +LL+SELFGH GAFTGA + G+F +A+ GTLFLDE+ P+ +Q KLLR ++ Sbjct: 209 IPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAGTLFLDEVGELPVELQSKLLRALQEK 268 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++ VGG+ ++++VR+V ATNADL + EG FR DL RL+ V LPPLRER+ DI Sbjct: 269 EVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFREDLFYRLSVIPVHLPPLRERKEDIP 328 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+ +FA + F+ + Y WPGN+REL+N VER + Sbjct: 329 LLVRHFAAKHGG-----ASVTFSPEILAVMAAYGWPGNVRELENTVERILIMRNADTIHP 383 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 DD+ + R P+ V +LP L Q E+E++ +L++ +NQ AA Sbjct: 384 DDLPEKVRRGRSPQRECRV---INLPDEGYSL----EQLEREIVVEALERNNWNQSSAAR 436 Query: 308 LLGLTYHQFRALLKKHQI 325 L + H ++K+ I Sbjct: 437 FLRIPRHTLIYRMEKYSI 454 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 512 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 114/323 (35%), Positives = 174/323 (53%), Gaps = 4/323 (1%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + + ++G ++ EV + L +D VL+ GE GTGKEL+A +H+ S R G F++ Sbjct: 143 DIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGKELVARAIHFNSPRKSGAFVA 202 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NC A+ ENL++SELFGHE GAFTGA +R G+F+ A+ GTLFLDE+ +Q KLLR Sbjct: 203 INCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLANNGTLFLDEIGELRPDMQVKLLR 262 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ + VG ++ ++ R++ ATN +L M+ EG FR DL RL + LPPLRER Sbjct: 263 VLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEFREDLFYRLNVMPIFLPPLRER 322 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI +A F + ++ + T A + L +YRWPGNIREL+N++ERS + Sbjct: 323 ADDIEALAGNFIKKFSKQHGRQI-TAITPEALDMLKSYRWPGNIRELENIIERSFIVENS 381 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 +D + S S P LD F+ + EKE + +L+ Sbjct: 382 HQITVDSLPDSIKLTPKDGADKTASVGYSGP---LDFDAFKEEMEKEFIVSALKANNGRI 438 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 + + + ++K+ I Sbjct: 439 NQTVAQANIPKNTLLRKIRKYGI 461 >UniRef50_UPI00016C3921 transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3921 Length = 527 Score = 512 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 129/326 (39%), Positives = 184/326 (56%), Gaps = 7/326 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++G++ + EVL+QV +AP D VL+ GE GTGKEL+A +H LS+R + F+ LNC Sbjct: 190 HEVVGDSRTLQEVLKQVEVVAPTDSAVLVTGETGTGKELVARAVHRLSARSERTFVKLNC 249 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ LL+SELFGHE GAFTGA +R GRFE ADGGTLFLDE+ P +Q KLLRV++ Sbjct: 250 AAIPTGLLESELFGHEKGAFTGAVERRLGRFELADGGTLFLDEVGDIPQELQPKLLRVLQ 309 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E ER+G ++ ++VNVRLV AT+ +L +V EG FR+DL RL V LP LR+R D Sbjct: 310 EQEFERLGSAKTVKVNVRLVAATHRNLAKLVAEGKFRSDLYYRLHVFPVHLPALRDRRED 369 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + +F + + A L Y WPGN+REL++++ER+V S+ Sbjct: 370 IPSLVRHFVALFAQRFGKRI-ETIPAEAMAALERYAWPGNVRELQHLIERAVILTTGSEL 428 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLR---EFQMQQEKELLQLSLQQGKYNQ 302 + + P PP T PT P + + E++L++ +L + + Sbjct: 429 RVPLGELTPTTAEPPSHPRPAVALTIPPTSPAEPPPQFNALRESERDLIRRALDRCGWVI 488 Query: 303 ---KRAAELLGLTYHQFRALLKKHQI 325 AA LGL + +KK + Sbjct: 489 GGPNGAAAQLGLKRTTLLSRMKKLGL 514 >UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ER80_ACIF5 Length = 545 Score = 512 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 134/343 (39%), Positives = 181/343 (52%), Gaps = 26/343 (7%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + + V V AP VL+ GE GTGKE+IA +HYLS R F+SLNCA Sbjct: 200 NVIGNSRAMQAVFADVHQAAPGKATVLLRGESGTGKEVIARAIHYLSPRRDKAFVSLNCA 259 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E++L+SELFGHE GAFTGA + GRFE ADGGTLFLDE+ Q KLLRV++ Sbjct: 260 ALPESILESELFGHERGAFTGATQERKGRFELADGGTLFLDEIGDISPAFQAKLLRVLQE 319 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGG+Q +VNVR++ ATN +L V++G FRADL R+ + LPPLRER DI Sbjct: 320 REFERVGGTQTRRVNVRIIAATNRNLEEAVSKGEFRADLYYRINVVSIFLPPLRERREDI 379 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + E+F + E + L T A +T+++ WPGN+REL+N VER+ Sbjct: 380 PALIEHFLARYNAENQRKLT--LTPEALQTMVSCYWPGNVRELENCVERTATMMRGDIIR 437 Query: 247 LDDII------------------------IDPFKRRPPEDAIAVSETTSLPTLPLDLREF 282 D+ + PP A V + + D Sbjct: 438 NLDVPCQRNQCLSMALRPLEGSHPIVTMKLSSGMSVPPHAAPDVEGQVTDASGAGDGEGS 497 Query: 283 QMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 E++ L ++ + + Q +AA LLG T + L KH I Sbjct: 498 LPLSERDRLIQAMDRCGWVQAKAARLLGTTTRKLGYALNKHGI 540 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 512 bits (1320), Expect = e-144, Method: Composition-based stats. Identities = 123/325 (37%), Positives = 176/325 (54%), Gaps = 19/325 (5%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 + ++G + + VL+++ +AP D VLI GE GTGKELIA +H LSSR + F+ L Sbjct: 385 NFEEIVGRSQALRTVLQEIETVAPTDSTVLIYGETGTGKELIARAIHNLSSRSRNSFVKL 444 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAA+ LL+SE+FGHE GAFTGA + GRFE A GT+FLDE+ P+ +Q KLLRV Sbjct: 445 NCAAIPTGLLESEMFGHEKGAFTGAVAQRIGRFELAHHGTVFLDEIGEIPLELQPKLLRV 504 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E ER+G S+ ++ + RL+ ATN DL MV + FRADL RL VQ+P LR+R Sbjct: 505 LQEREFERLGSSRTMRTDARLIAATNRDLATMVEDRNFRADLFYRLNVFPVQVPALRDRP 564 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+ +F Q R + + L+ Y WPGNIREL+N++ER+V Sbjct: 565 EDIPLLVRHFVQQFARRMGKAVDT-IPTETMNVLVRYHWPGNIRELQNLLERAVILSAGP 623 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + ++ + + P A E E+ + +L+ + Sbjct: 624 VLKV---PLNDLQLQAPAPTTARK------------TETLESAERRHILEALEAADWVIS 668 Query: 304 ---RAAELLGLTYHQFRALLKKHQI 325 AAE LGL +A ++K I Sbjct: 669 GPKGAAEALGLKRSTLQARMEKLGI 693 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 512 bits (1320), Expect = e-144, Method: Composition-based stats. Identities = 129/321 (40%), Positives = 188/321 (58%), Gaps = 6/321 (1%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + +D ++G + + E+ +Q+ +A D VLI GE GTGKE++A+ +H S+R GP + Sbjct: 142 DPRDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKEVLANLIHVNSARRNGPMVK 201 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAAL E+LL+SELFGHE GAFTGA + GRFE A G++FLDE+ + Q+KLLR Sbjct: 202 VNCAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHKGSIFLDEIGEMTLATQKKLLR 261 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 +++ E ERVGG+ ++V+VR++ ATN DL A V GTFR DL RL + LP LR+R Sbjct: 262 ILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRLNVITLHLPALRQR 321 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+AE+F + P +E A E L NY WPGN+R+L++ +ER+V Sbjct: 322 IGDIPLLAEFFLDKYRYAPSSPPAR-ISEEAMERLNNYDWPGNVRQLEHEIERAVILSRG 380 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + + + P R + IA + L E E+ LQ +L Q + Sbjct: 381 NVITSEHMSLVPSSRSALQVDIA-----ARLREKSTLEELLADVERLALQEALVQHDDDL 435 Query: 303 KRAAELLGLTYHQFRALLKKH 323 K AA LGL+ +F+ KK+ Sbjct: 436 KVAARSLGLSEAEFQKRQKKY 456 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 511 bits (1319), Expect = e-144, Method: Composition-based stats. Identities = 125/319 (39%), Positives = 185/319 (57%), Gaps = 11/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G + EVL + +A + VLI GE GTGKEL+A +H S R +GP + +NCA Sbjct: 190 NIIGRSKVIQEVLRAIDQVADTNTTVLISGETGTGKELVARAIHDNSRRAKGPLVQVNCA 249 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ + LL+SELFGHE GAFTGA R GRFE A GGT+FLDE+ + Q KLLRV++ Sbjct: 250 AMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIFLDEVGELSPIAQAKLLRVLQE 309 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E + +G S+ ++V+VR++ A+N DL V GTFR+DL RL + LPPLRER DI Sbjct: 310 REFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDLYYRLNVFPIFLPPLRERGPDI 369 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +L+A+YF ++ RE+ + T A + L+ Y WPGN+REL+N +ER+V G + Sbjct: 370 LLLADYFVLKYARELDKDV-KRITTSAIDMLMCYHWPGNVRELENCIERAVLLAGGNAVD 428 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + ++ + L E++L+ +L+ + NQ +AA Sbjct: 429 SWHLPPTLQMKPVGMQNVSRGK----------LEALVSAFERDLITDALKDVRGNQSQAA 478 Query: 307 ELLGLTYHQFRALLKKHQI 325 LLG T + ++K+ I Sbjct: 479 RLLGTTKRIVQYKVEKYGI 497 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 511 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 177/323 (54%), Gaps = 10/323 (3%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 ++G + + E V A D PV I GE GTGKEL+A +H LS R + P+I Sbjct: 144 SSFQGIVGHSRQMKNLFELVEKAAQSDFPVFICGESGTGKELVAQAIHNLSPRAEQPYIQ 203 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAALNE+LL+SELFGH GAFTGA + GRFE A G +FLDE+ PM +Q KLLR Sbjct: 204 VNCAALNESLLESELFGHVKGAFTGALQHRKGRFEAAHKGDIFLDEIGDLPMAMQVKLLR 263 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V+E ERVG ++ + V++R + ATN +LP ++ G FR DL R+ + LPPLRER Sbjct: 264 VLETKTFERVGDNRTISVDLRFITATNKNLPDLIARGGFREDLFYRINVIPIHLPPLRER 323 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + D+ + ++F ++ R+ K + G + A + Y WPGN+RELK+ +E S Sbjct: 324 KEDVPHLVDFFIKRLSRKNKKNI-QGLSPEAMRIFMQYSWPGNVRELKSALEYSYVLAEG 382 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 +++ A+ + + E Q++K+ L +L+Q N+ Sbjct: 383 DRIRSENLPEYLKDGGNDFQAVDLPPAPA---------ENLQQRQKQELIEALKQSSGNK 433 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 +AA LLG+ ++K+ I Sbjct: 434 SQAARLLGINRVTVLNRMRKYGI 456 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 116/331 (35%), Positives = 165/331 (49%), Gaps = 14/331 (4%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 + G + S + +A D VLI GE G GKEL A +H S R + PFI++NC A Sbjct: 211 IKGHSASIQSAIGSAKKVAQTDATVLIYGESGVGKELFAQAIHQASRRHEKPFIAINCGA 270 Query: 68 LNENLLDSELFGHEAGAFTGA-QKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 + L +SELFG++ GAFTGA +K PG+ E A GGTLFLDE+ P+ +Q KLLR ++ Sbjct: 271 IPAALFESELFGYQGGAFTGAEKKGKPGKLELAHGGTLFLDEIGELPLELQVKLLRALQE 330 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 + RVGG++P+ VN R+V ATN L MV +G FR DL RL +++PPLRER D+ Sbjct: 331 RQFYRVGGTEPITVNTRIVAATNRQLEQMVADGRFREDLYYRLNVFSLEIPPLRERREDL 390 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + + F + + P + + L Y WPGNIR+L+NV+ER Sbjct: 391 PELVQIFIHEYSVAHDQSV-PRISPEVMQALFEYTWPGNIRQLRNVIERLSILQENGVIL 449 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQ------------MQQEKELLQLS 294 + + P + P EKE + + Sbjct: 450 PEHLPSVIRSHTEPTHVSLHTPMGGTYAPPTTTPPPIIRPSIAIAYPSSPANEKERILAA 509 Query: 295 LQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 L++ N+K AAELLG++ +KK I Sbjct: 510 LERTYGNKKAAAELLGVSRGTLYNKMKKFNI 540 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 121/325 (37%), Positives = 176/325 (54%), Gaps = 6/325 (1%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + + ++GE + +V+ QV +A D VLI GE GTGKELIA +H S R PF Sbjct: 134 LGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWAIHDRSKRVSQPF 193 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 +++NC A+ L++SELFGHE GAFT A++ G FERA+GGTLFLDE+ P+ Q KL Sbjct: 194 VAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLDEIGELPLDAQVKL 253 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV+E ++ R+GG + + VNVR+V ATN +L V G FR DLL RL +QLPPLR Sbjct: 254 LRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLYRLNVFTIQLPPLR 313 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DI L+A +F + + L + T A + L Y WPGN+R+L+N V+ ++ Sbjct: 314 ERKEDIPLLAAFFLRKHNSLLNLSI-ESITPEAMDQLCAYDWPGNVRDLENAVQSAMILC 372 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + + LR+ EK + +LQ+ Y Sbjct: 373 VDRQIHPGHLPARIKSYQMERLTAPQEAE-----EDTSLRDTNSLAEKARILSALQKHNY 427 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N+ AE L ++ +K++ + Sbjct: 428 NRTLTAEALNISRKTLFNKMKRYNL 452 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 116/337 (34%), Positives = 184/337 (54%), Gaps = 15/337 (4%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + + N++G + + + + + +A D +LI GE GTGKE++A +H+ S R PF++ Sbjct: 140 QVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKEMVARAIHFNSGRLGKPFVA 199 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAA+ +LL+SELFG E GAFTGA +R G+FE+A+ GT+FLDE+ P+ +Q K+LR Sbjct: 200 INCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQGTIFLDEIGDMPLDLQAKILR 259 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E+ RVGG+Q + VNVR+V ATN +L V + FR DL RL + L PLRER Sbjct: 260 VLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFREDLYYRLNVVPITLAPLRER 319 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI + YF + C E+ +P T A L + WPGN+REL+N ++R+V Sbjct: 320 RDDIPELVRYFLDRTCTELSIP-PKQLTPEAMALLSRHSWPGNVRELENTIKRAVILSND 378 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDL--------------REFQMQQEK 288 D + + ++ L + Q E+ Sbjct: 379 PMLTEADFDGLQPEGEETAMTPQDASLEAIVEAKLRSCLTGIEKLDKSDIHAKVLQQVER 438 Query: 289 ELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 L++ L++ ++NQ +AA++LG+ + R + +I Sbjct: 439 PLIRFILEKTRWNQVKAADILGINRNTLRKKIHDLEI 475 >UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLY9_LEGLO Length = 468 Score = 510 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 117/333 (35%), Positives = 173/333 (51%), Gaps = 14/333 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +L+G + S V + +A + VL++GE GTGKE++A +H SSR PFI +N Sbjct: 134 FRSLVGNSTSIRTVRRLIEQVADTEASVLVLGESGTGKEVVARNIHAFSSRANKPFIPIN 193 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A+ LL+SELFGHE GAFTGA GRFE A+ GTLFLDE+ P+ +Q KLLRV+ Sbjct: 194 CGAIPGELLESELFGHEKGAFTGAITTRQGRFELANSGTLFLDEIGDMPLPMQVKLLRVL 253 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + ERVG ++ + VNVR++ AT+ +L + EG FR DL RL +++PPLRER Sbjct: 254 QERCFERVGSNKSIDVNVRIIAATHRNLEEAIKEGKFREDLFYRLNVFPIEMPPLRERAE 313 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+ ++ E P+ A L Y WPGNIREL N+VER + Sbjct: 314 DIPLIFNELIARIESE-NRPIV-HLMPDAMAALSEYSWPGNIRELANLVERLTILYPKGI 371 Query: 245 YPLDDIIIDPF------------KRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQ 292 +D+ + +S+ T + +DL+E ++ E L+ Sbjct: 372 LNKEDLPQKIRSEYKTYFDSDTPESEREALLRVISQGTVSSSEGIDLKEHLVKTELALIS 431 Query: 293 LSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +L + + AA L + ++K+ + Sbjct: 432 QALNESDWVVSHAANYLNMRRTTLVEKMRKYGL 464 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 510 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 117/322 (36%), Positives = 175/322 (54%), Gaps = 12/322 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 ++ ++G S + + E + +AP + VLI GE GTGKEL+A LH S R G FI +N Sbjct: 261 ENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKELVAHALHVESGR-PGSFIKVN 319 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 CAA+ ENL ++ELFG+ GAFTGA+K G+FE A+ GT+FLDE+ P+ +Q KLLRV Sbjct: 320 CAAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKLLRV 379 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E+ER+G + ++NVR++ ATN +L ++ + FR DL RL + +P LRER Sbjct: 380 LQEKEVERLGDRKTRKINVRVIAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERI 439 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 D+ L+ +YF + +E + G + + +NY WPGNIREL+NV+ER Sbjct: 440 EDLPLLIKYFIEKFNKEYGTNV-TGISPEVMDIFMNYSWPGNIRELENVLERCFNLVEGK 498 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + L L EKEL++ +L + K N+ Sbjct: 499 VIEKKYLPPYILGEELKNKEFP---------LGQSLTNLLEAYEKELIKAALLKAKGNKS 549 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA LLG++ LK + Sbjct: 550 KAANLLGISRQWLHKRLKYFNL 571 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 510 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 143/343 (41%), Positives = 187/343 (54%), Gaps = 28/343 (8%) Query: 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 +G + S V QV +AP VL+ GE GTGKELIA ++ LS R PF+S+NCAAL Sbjct: 203 IGRSASMQHVFAQVHQVAPARTTVLLRGESGTGKELIARAIYRLSPRKDQPFVSVNCAAL 262 Query: 69 NENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 E LL+SELFGHE GAFTGAQ + GRFE A GGTLFLDE+ Q KLLRV++ E Sbjct: 263 TETLLESELFGHEKGAFTGAQTQRKGRFELAHGGTLFLDEIGDISPSFQAKLLRVLQERE 322 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 ERVGG+ P++V+VRL+ ATN +L MV EG FRADL R+ + LPPLRER DI Sbjct: 323 FERVGGTTPVRVDVRLIVATNRNLEQMVREGEFRADLYYRINVVSIVLPPLRERREDIPE 382 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP-- 246 MA+YF + RE L F E A L + WPGN+REL+N +ER+ Sbjct: 383 MAQYFLNRFNRENGRAL--HFNEEALRVLSSCYWPGNVRELENCIERTATMAHHDTIGRS 440 Query: 247 -------------LDDIIIDPFKRRPPEDAIAVSETTSLPT-----------LPLDLREF 282 L + + R + VS ++P L + E Sbjct: 441 SFLCEIDQCLTKVLHHLEREDAVRPARPSDVTVSNALNVPAKFGAPERDAGGLGMHSGEH 500 Query: 283 QMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + E+E L ++++ + Q +AA LLG+T Q L+KH I Sbjct: 501 IPEDERERLLWAMERCGWVQAKAARLLGITARQIGYALRKHGI 543 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 510 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 125/318 (39%), Positives = 187/318 (58%), Gaps = 4/318 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G + + + Q++ +AP +LI GE GTGKEL+A LH LS R +S+NCAA Sbjct: 141 LVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQALHRLSPRSNKALVSINCAA 200 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 ENLL+SELFGHE GAFTGA +R G E +DGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 201 FAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLDEIGEFPLNLQPKLLRVLQEK 260 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 RVGG+ + ++R++ AT+ +L M+ EGTFR DL RL + LPPLR R DI Sbjct: 261 TFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYYRLNVVSLHLPPLRHRREDIP 320 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+++ F ++ R++ PL P + +A+ L +Y WPGN+REL+N++ER + Sbjct: 321 LLSQLFLERLSRDMGCPL-PQLSSQAQHDLYHYEWPGNVRELQNILERGLLFCDGPTLEQ 379 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 + + + P + + + L L E E++L+Q +L + Q +AAE Sbjct: 380 NHLPQQFHSQAPHHNGCSETAAMPL---QQPLPEHLETIEQKLIQAALIDARGVQAKAAE 436 Query: 308 LLGLTYHQFRALLKKHQI 325 LLG++ + LKK+ + Sbjct: 437 LLGISRSNLQYKLKKYHL 454 >UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUD7_PERMH Length = 456 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 130/329 (39%), Positives = 196/329 (59%), Gaps = 5/329 (1%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + +Y +++G + E+ + +AP D PVLI GE GTGKEL+A + LS R PF Sbjct: 129 LCQYLCSIIGSSPQLREICKLAGEVAPTDLPVLITGETGTGKELLARGIWKLSKRSNKPF 188 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I++NCAA+ ENLL+SELFG+E GAFTGA+K G+FE ADGGT+FLDE+ P+ Q KL Sbjct: 189 IAINCAAIPENLLESELFGYEKGAFTGAEKTKEGKFELADGGTIFLDEIGELPLSAQSKL 248 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ G RVGG++ ++V+VR++ ATN DL MV +G FR DL RL + LPPLR Sbjct: 249 LRVLQEGTFYRVGGNKEIKVDVRVMAATNRDLEDMVAKGKFREDLYYRLNLIHLHLPPLR 308 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DI + E + +++ + G ++ E L + RW GNIREL+N V RS+ Sbjct: 309 ERKEDIPYIVECIVNKYNQKLSKSIA-GASKEYMEVLKDQRWEGNIRELENTVVRSMILC 367 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTS----LPTLPLDLREFQMQQEKELLQLSLQ 296 + ++D+ KR P+ E + E + + +K ++Q +L+ Sbjct: 368 RDNILTVNDLTFLREKRVKPQIEDNFEEILKNRVLASLEEGSIEEIKEKIDKIIVQTALE 427 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKHQI 325 K+NQ +A++LLG+ R ++K+ + Sbjct: 428 YTKHNQVKASQLLGINRATLRKKIQKYGL 456 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 129/321 (40%), Positives = 174/321 (54%), Gaps = 11/321 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +NL+G+ E+ E +S +A VLI GE GTGKELIAS +H S+R PFI +N Sbjct: 143 FENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTGKELIASAIHAKSTRKDKPFIQIN 202 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAAL E L+ SELFGHE GAFTGA R G FE+A GGTLFLDE+ Q LLR++ Sbjct: 203 CAALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGGTLFLDEIGDISPTTQVSLLRIL 262 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 E G +RVGG++ ++ +VRL+CATN DL A E FR DL RL +Q PPLR+R S Sbjct: 263 ELGTFQRVGGTETIKADVRLICATNRDLAAAAREKQFREDLYYRLNVVSLQAPPLRDRRS 322 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+ YF + C + G T A L NY WPGN REL N++E +V Sbjct: 323 DIPLLVRYFLERYCSLNNKQID-GVTRDAMTLLCNYDWPGNCRELANIIEHAVIFSRGRT 381 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 D + + ++ T+ E L++ L++ +N K+ Sbjct: 382 LDKDSLPSQIRTSDRHSSGLTLNLATA----------TLADAESALIKKVLEESNWNLKK 431 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AAELL + ++K+ + Sbjct: 432 AAELLDIARGTLYGKMEKYHL 452 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 126/319 (39%), Positives = 186/319 (58%), Gaps = 3/319 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++GE+ ++L V+ +A + V I GE GTGKE+IA +H S+R Q PFI +NCA Sbjct: 143 QIIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIAQAIHANSARSQFPFIKVNCA 202 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E L++SE FGHE GAFTGA + GRFE A GTL LDE+ P+ VQ KLLR I+ Sbjct: 203 AIPETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTLLLDEITEIPLAVQAKLLRAIQE 262 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E ERVGGS+P++V+VRL+ +N D+ + R DL RL + LPPLR+R DI Sbjct: 263 QEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLYYRLNVVPIYLPPLRDRPEDI 322 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +A YF +MC E F++ + + L+ Y WPGN+REL N+VER+V S+ Sbjct: 323 LPLAHYFLEKMCMENHKQ-AKTFSKESIKKLVGYAWPGNVRELANIVERAVVMTTNSEIT 381 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + I+ P + +L +LP+ + + EK L+ +LQ N+ + A Sbjct: 382 PEHLYIENNHPNLPLRTASTLSQNTLTSLPVGM--TLQELEKRLIIETLQAQHNNRTKTA 439 Query: 307 ELLGLTYHQFRALLKKHQI 325 E+LG++ R L ++ + Sbjct: 440 EVLGISVRTLRNKLNEYNM 458 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 135/322 (41%), Positives = 188/322 (58%), Gaps = 6/322 (1%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 ++G + + +VL V AP VLI GE GTGKELIA +HY S R PF+S+ Sbjct: 141 GVHKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGKELIARAIHYTSPRKDNPFVSV 200 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NC ALN +L+SELFGHE G+FTGA GRFE+ADGGTLFLDE+A +Q KLLRV Sbjct: 201 NCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGGTLFLDEIAELTPDLQVKLLRV 260 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ ERVGG + ++V++R+V ATN DL AMV +GTFR DL RL + LPPLRER Sbjct: 261 LQERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFRDDLYYRLNVVQIPLPPLRERR 320 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+ +F ++C + +P F+ A L Y WPGNIR+L+NVVE + + Sbjct: 321 EDIPLLVAHFVDKVCTDNTMP-AKTFSTEALNYLTGYEWPGNIRQLENVVESCLVLVPGT 379 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 +D++ + ++ L + LDL + + E L++ +L + Q Sbjct: 380 VINVDNLPAEIR-----DEESQFKSAVDLLPVQLDLADTLEKIEAALIRRALVRADLVQV 434 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AAE LG++ + LKK+ I Sbjct: 435 KAAEYLGISKSLLQYKLKKYAI 456 >UniRef50_B8DLL1 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DLL1_DESVM Length = 350 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 124/342 (36%), Positives = 175/342 (51%), Gaps = 25/342 (7%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 ++G++ S +V ++ +AP D VL+ GE GTGKEL+ LH S R PF+ +N Sbjct: 5 TSGIIGQSTSLRDVFRILAKVAPTDSTVLVTGESGTGKELLVRALHSNSQRRSMPFVPIN 64 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A+ + LL+SELFGHE GAFT A + PGRFE ADGGT+FLDE+ + +Q K+LRV+ Sbjct: 65 CGAIPKELLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLTLQVKILRVL 124 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ERVGG+ +V+VR+V ATN DL V G FR DL RL + LP LRER Sbjct: 125 QEKEIERVGGAGVKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHLPALRERGG 184 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI+++AE+F + C R+ L Y WPGN+REL+N +ER Sbjct: 185 DILVLAEHFMRRFCERKGRRCL-ALAPDTRKVLAAYSWPGNVRELENFMERLSILADDDV 243 Query: 245 YPLDDIIIDP------------------------FKRRPPEDAIAVSETTSLPTLPLDLR 280 P D+ + T L ++L+ Sbjct: 244 VPPADLPRKILDEVGDIVSLPEPTPPDPLPVATGAASGGMPAGFSWPTITDLRDKGMNLK 303 Query: 281 EFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKK 322 +F E+ LL +L + + +AAE+LG+ LKK Sbjct: 304 DFLDTVEERLLDEALTMAEGVKNQAAEILGIKRTTLIEKLKK 345 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 131/325 (40%), Positives = 192/325 (59%), Gaps = 13/325 (4%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A+ N +G++ ++VL S A VLI GE GTGKE+IA +HY S R +GPFI Sbjct: 247 AQAFANYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRRRGPFI 306 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NC A+ LL+SELFGHE GAFTGA +R G+FE A+ GT+FLDE+ +Q KLL Sbjct: 307 RVNCGAIPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNLQVKLL 366 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ E +RVGG + + V+VR++ ATN DL AMV EGTFR DL RL + LPPLR+ Sbjct: 367 RVLQQKEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRD 426 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI L+ E+F ++ +E K + G T A + ++YRWPGN+REL+NV+ER + Sbjct: 427 RPDDIPLLVEHFIEKISKENKKDV-RGITPDAMQMFMHYRWPGNVRELENVIERVITLMD 485 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQ-GKY 300 T + + ++++ T LP + EK+++ +L+Q + Sbjct: 486 TDLITAAMLPSYIKGDIAGREVQSLADDTVLPW---------EEYEKQIIANALRQGTSF 536 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N AA+LL +++ A +K+ + Sbjct: 537 N--GAAKLLRISHKTVAAKARKYGL 559 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 509 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 123/345 (35%), Positives = 188/345 (54%), Gaps = 24/345 (6%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +L+G+A S ++ E++ +A VLI GE GTGKE+IA+ +HY SSR + PF+ + Sbjct: 360 KFGSLIGKAASMEKMFEKIQLVADSRASVLITGESGTGKEMIANAIHYNSSRSENPFVKI 419 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAA+ ENLL+SELFGH+ G+FTGA G+FE AD GT+FLDE+ + +Q KLLRV Sbjct: 420 NCAAIPENLLESELFGHKKGSFTGAVTDKKGKFELADTGTIFLDEIGEMDLNLQSKLLRV 479 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E+E +G ++ +V+VR++ ATNA+L +V E FRADL RL + PPLR+R Sbjct: 480 LQEREIEAIGSTKAKKVDVRIIAATNAELEQLVAEKKFRADLFYRLNVVKINTPPLRDRV 539 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+ +F + ++ + G + A LL YRWPGN+REL+NV+ER+V Sbjct: 540 EDIPLLMNHFLEKYTKDNNKSI-KGISREASRLLLKYRWPGNVRELENVIERAVVLAQDE 598 Query: 244 DYPLDDI----------IIDPFKRRPPEDAIAVSETTSLPTLPLDLRE------------ 281 +D + + +VS L L Sbjct: 599 ILNEEDFSDILSNMEEMPDNTVEVSHSNHVESVSGAEPLDLGSGRLTSGQLDGLDGRAME 658 Query: 282 -FQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + E L+Q ++++ +Y + R A+ LG+ + +K+ I Sbjct: 659 IVVSEVESRLIQYAMKKFRYTKTRVAKFLGINRNTLDKKIKELNI 703 >UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Gammaproteobacteria RepID=Q3J8M6_NITOC Length = 479 Score = 509 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 124/334 (37%), Positives = 175/334 (52%), Gaps = 13/334 (3%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 E +L+G + + V + +A + VLI+GE GTGKE++A LHY SSR PF+ Sbjct: 139 ELFRSLVGNSRATRTVRHLIEQVADSNATVLILGESGTGKEVVARNLHYHSSRRGNPFVP 198 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NC A+ LL+SELFGHE GAFTGA GRFE A GTLFLDE+ PM +Q KLLR Sbjct: 199 VNCGAIPGELLESELFGHEKGAFTGAITARQGRFELAQKGTLFLDEIGDMPMAMQVKLLR 258 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ ERVG ++ + V+VR++ AT+ +L + EG FR DL RL +++PPLRER Sbjct: 259 VLQERTFERVGSNKLIHVDVRIIAATHRNLEEQLQEGNFREDLYYRLNVFPIEMPPLRER 318 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+ ++ E + T A L Y WPGN+REL N+VER H Sbjct: 319 VEDIPLLINEIITRIEHEKGASV--RLTPAAVMALCQYPWPGNVRELANLVERLTILHPY 376 Query: 243 SDYPLDDII-----------IDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELL 291 D+ + E + ET LP LDL++ E+ L+ Sbjct: 377 GVVDHYDLPEKYRIEGEGISPSAPELASLERVVDTLETPRLPREGLDLKKHLSCIERSLI 436 Query: 292 QLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + +L++ +AA L + L+K+ I Sbjct: 437 KQALEEADGVVAQAAHRLRMRRTTLVEKLRKYDI 470 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 509 bits (1312), Expect = e-143, Method: Composition-based stats. Identities = 118/322 (36%), Positives = 178/322 (55%), Gaps = 6/322 (1%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 + ++G + +EVL+ + ++ + VLI GE GTGKELIA +HY R PF+ + Sbjct: 142 KLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKELIARAIHYNGPRSGYPFVVI 201 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NC AL ENL +SELFGH G+FTGA K G F A GT+FLDE+ Q KLLR Sbjct: 202 NCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKGTIFLDEIGETSASTQVKLLRF 261 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ GE+ +VGG++ + V+VR++ ATN +L VN+G FR DL R+ + LP L+ER+ Sbjct: 262 LQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFRKDLFYRINVIRIHLPQLKERK 321 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+ YF ++K F+ A LLNY WPGNIREL+N+VER+V Sbjct: 322 EDIPLLVNYFLELYTDKLKKD-KRVFSGSAMAVLLNYDWPGNIRELQNIVERAVALSKNQ 380 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 ++ + + S T+ + E +QEK + ++ + NQ Sbjct: 381 VIGVEALPLPTGGF-----VAHNSNPERDVTVKSSIVETLSEQEKNAIVEAMNKYGGNQT 435 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 + +++LG++ +KK++I Sbjct: 436 KVSQVLGISTTTLWRKIKKYKI 457 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 509 bits (1312), Expect = e-143, Method: Composition-based stats. Identities = 112/325 (34%), Positives = 177/325 (54%), Gaps = 10/325 (3%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + E + ++G++ ++ +++ ++ + +LI GE GTGKEL+A +H S R PF Sbjct: 125 VEEEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRRSKRANQPF 184 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I +NC+A+ L ++ELFGHE G+FTGA R G+ E A GTLFLDE+ P+ +Q KL Sbjct: 185 IPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIGEMPLFMQAKL 244 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E RVGG + +++ R++ ATN +L MV FR DL R+ +++PPLR Sbjct: 245 LRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVIHLKIPPLR 304 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DI L+ + F + + ++ A E L+NY WPGN+R+L+N++ER+V Sbjct: 305 ERKEDIPLLVKKFIDKFSKINNKNVY-DIDNDALEILMNYDWPGNVRQLENIIERAVVLC 363 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + + SE SL EK ++ LQ+ + Sbjct: 364 QGEIITANHLPDRIKSNSQKISENIRSENNSLN---------LYDIEKNIILKVLQEENF 414 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 NQ RAA+ LG++ Q R +K + Sbjct: 415 NQTRAAQKLGISRKQLRTKMKNFGL 439 >UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJY4_THEYD Length = 421 Score = 508 bits (1311), Expect = e-143, Method: Composition-based stats. Identities = 125/320 (39%), Positives = 182/320 (56%), Gaps = 11/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + L+G + +V + A D VLI GE GTGKEL+A +H LS R + PFI +NC Sbjct: 111 NGLIGISRIMEDVYCGIRKAALTDSNVLITGESGTGKELVARAIHNLSERKENPFIVINC 170 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ + LL+SELFG E GAFTGA G E AD GTLF DE+ + Q K+LRVI+ Sbjct: 171 TAIPDTLLESELFGFEKGAFTGANYTKKGLIEWADRGTLFFDEIGDVSPLFQTKILRVIQ 230 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE R+GG+ P++V+VR + ATN DL EG FR DL RL +++PPLR R+ D Sbjct: 231 EGEFIRIGGNHPVKVDVRFIAATNKDLSKACKEGVFREDLFYRLNVIHIEIPPLRSRKED 290 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + ++F + + K G TE A + L++Y +PGN+REL+N++ER++ + + Sbjct: 291 IPSLTQFFIKKHSAKRKDINIKGITEEALDALMSYSFPGNVRELENIIERAIAFTNSVEI 350 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + D+ K + + +LRE EKEL+ +LQ+ + N +A Sbjct: 351 TIKDLPAYLLKTQHSKKTPHG-----------NLREAVDNFEKELIWSALQKSRGNISKA 399 Query: 306 AELLGLTYHQFRALLKKHQI 325 AELLG+ Q + LK+ +I Sbjct: 400 AELLGIHRQQLQRKLKQFKI 419 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 508 bits (1311), Expect = e-143, Method: Composition-based stats. Identities = 116/328 (35%), Positives = 171/328 (52%), Gaps = 18/328 (5%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + +++G + + +S +AP + VL++GE GTGKE+ A +H S R Sbjct: 214 LQNTFADIVGTSAEMQRRITILSRVAPSESTVLLLGETGTGKEVFARAIHAGSPRRDNLM 273 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I +NCAAL +L++SELFGHE G+FTGA +R G+FE AD TLFLDE+ P+ Q KL Sbjct: 274 IKVNCAALPPHLIESELFGHEKGSFTGATQRRIGKFELADHSTLFLDEIGELPLEFQSKL 333 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E+ER+GG ++VNVR+V ATN +L V G FR+DL RL + +PPLR Sbjct: 334 LRVLQEKEIERIGGKGSIKVNVRIVAATNRNLEEEVRAGRFRSDLYYRLHVFPIAIPPLR 393 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DI +A +F + P + +A E L++Y WPGN+REL++++ER++ Sbjct: 394 ERKEDIPALANHFLQRFAA-NSRREAPSISAKAMEGLMHYEWPGNVRELEHLMERTLLLT 452 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 T D+ P D+ + EKE + L+ Sbjct: 453 TTPVIAKIDLPGVPVTASKDPDSTFILP--------------LDLMEKEYILKVLKLCNG 498 Query: 301 NQK---RAAELLGLTYHQFRALLKKHQI 325 AA L L + +KK I Sbjct: 499 RIAGPNGAAAKLKLPSTTLNSRMKKLGI 526 >UniRef50_UPI00016C585F ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C585F Length = 643 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 129/321 (40%), Positives = 180/321 (56%), Gaps = 11/321 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + ++GE+ ++ QV +A VL+ GE G+GKEL+A +H S R +G FI LN Sbjct: 332 ESEIVGESAVLQQIESQVVRVAETRATVLVRGESGSGKELVARAIHLHSPRREGAFICLN 391 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAAL E LL+SELFGHE GAFTGA +R G+FE AD GT+FLDE+ + Q K LRV+ Sbjct: 392 CAALTETLLESELFGHEKGAFTGATERMVGKFEAADNGTIFLDEIGEMALSTQAKFLRVL 451 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 E ERVGG+ ++V+VR+V ATN L V GTFR DL RL + +PPLR+R Sbjct: 452 EGHPFERVGGNTAIKVDVRVVAATNRPLEEAVRAGTFRRDLFYRLQVVQLDVPPLRDRLD 511 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D+ L+AE+F + RE F GFT A + L YRWPGN+REL+NV+ER+V Sbjct: 512 DVPLLAEHFLKRFARETARK-FKGFTPEALDKLRAYRWPGNVRELRNVIERAVALGNGPQ 570 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 DI + P + A+ E + EK + +L+ +N+ R Sbjct: 571 LDAADIWLSGLDVGAPVVSAALVYKP----------ETIEEVEKRHILETLKHTDWNKSR 620 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA +LG+ + ++ + Sbjct: 621 AATILGIERSTLDRKIDRYGL 641 >UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTN7_DYAFD Length = 479 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 112/323 (34%), Positives = 170/323 (52%), Gaps = 18/323 (5%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+++G + V + +S ++ + VL++GE GTGKEL+A +H S+R + +NC Sbjct: 162 DDIIGSSGPMQRVFQLLSQVSFTNSTVLLLGETGTGKELVARAIHNSSARKDRLMVRVNC 221 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ +L++SELFGHE G+FTGA +R G+FE A+ TLFLDE+ P+ +Q KLLR I+ Sbjct: 222 AAIPAHLIESELFGHEKGSFTGAFERRIGKFELANQATLFLDEIGEMPLDMQAKLLRAIQ 281 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ER+GG ++V+VR++ ATN +L V +G FR+DL RL + LPPLRER D Sbjct: 282 EREIERIGGKGVIKVDVRIIAATNRNLLEEVQQGRFRSDLFYRLHVFPITLPPLRERTGD 341 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A+ F + + + + + LL Y WPGN+REL++ +ER V Sbjct: 342 ISLLAKQFVGRFAKNNGKSISR-ISSNVMKALLAYPWPGNVRELEHQMERCVLLARDHVI 400 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ--- 302 + P I + + E+E + L Q Sbjct: 401 RDVLLPSPTQSGHAPAAGI--------------YTKTHEENEREYIIRVLNQCNGKIYGP 446 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AA+LL L + +KK I Sbjct: 447 GGAAQLLNLKVGTLNSKIKKLGI 469 >UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C2KAU4_9FLAO Length = 519 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 114/325 (35%), Positives = 180/325 (55%), Gaps = 19/325 (5%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 ++G++ + + EQ++ +AP V+I GE GTGKELIA +H LS I + Sbjct: 201 GFHGIVGQSEAMQFIFEQITQVAPSQSNVIIFGETGTGKELIAQAVHELSEFSGKKMIRI 260 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAA+ NL++SELFGHE G+FTGA ++ G+FE+A T+FLDE+ P+ +Q +LLRV Sbjct: 261 NCAAIPANLIESELFGHEKGSFTGATEQRKGKFEQAHNSTIFLDEIGELPLELQARLLRV 320 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E+ER+GG++ ++VN R++ ATN +L V EG FR DL RL ++LPPLRER+ Sbjct: 321 LQEKEIERIGGNKRIKVNARIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELPPLRERK 380 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+A+YF ++ + + GF++ + ++ W GNIREL+N+VERS+ Sbjct: 381 EDIPLLADYFLEKLYPKTGKKIN-GFSQNVVKMMMANPWLGNIRELENMVERSMLTAKGD 439 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ- 302 D + ++ + + EKE + +++ Sbjct: 440 IIREMDFPKVINYQNTDQEVQV---------------KTLQEFEKEYILKIIKKCNGRIF 484 Query: 303 --KRAAELLGLTYHQFRALLKKHQI 325 AA+LLGL + ++K I Sbjct: 485 GEIGAAKLLGLPPTTLISKMQKLGI 509 >UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TH4_GEOMG Length = 556 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 122/323 (37%), Positives = 173/323 (53%), Gaps = 20/323 (6%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +++G++ VL ++ +A D VLI+GE GTGKEL+A +H S R P + +NC Sbjct: 242 HHIIGQSLPLKRVLAKIQQIALTDTTVLILGETGTGKELVARAIHAASQRRDRPMVKVNC 301 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+L NL++SELFGHE GAFT AQ R GRFE AD TLFLDE+ P+ Q KLLRV++ Sbjct: 302 ASLPANLIESELFGHEKGAFTSAQVRQIGRFEFADRNTLFLDEIGELPLESQAKLLRVLQ 361 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE ER+G S+ L+V+VR+V ATN DL V +G FR DL RL + +PPLRER D Sbjct: 362 EGEFERLGSSRTLKVDVRIVAATNRDLEEEVRKGRFRQDLWYRLNIFPITVPPLRERTED 421 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ F + R++ + ++L Y WPGN+REL+NV+ER+ Sbjct: 422 IPLLINLFVNKFGRKLGKSI-RRIPAGVMKSLQAYDWPGNVRELENVIERAAINTVGPSL 480 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ--- 302 L D +++ + R + E+ + L Sbjct: 481 QLLD----------------NLKSSLVTEKTAAPRLTLEEAERSHILQVLADTNGRIEGP 524 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 K AA +LG+ + RA ++K I Sbjct: 525 KGAALILGINHSTLRARMRKLGI 547 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 121/323 (37%), Positives = 179/323 (55%), Gaps = 3/323 (0%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + L+G+ + ++ E VS LA D VLI GE G GKE++A LH SR P +S Sbjct: 140 DQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVLAKALHKSGSRSGKPLVS 199 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NC A+ E LL+SELFGH GAFTGA + PGRFE A+GGT+FLDE+ +Q KLLR Sbjct: 200 INCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIFLDEIGDMSAKLQVKLLR 259 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E VG Q + V+VR++ AT+ DL A + G FR DL RL + LPPLRER Sbjct: 260 VLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDLYYRLNVIPLTLPPLRER 319 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI+L+ ++F + ++ K G ++ + +LNY+WPGN+REL+N++ER Sbjct: 320 GDDILLLTDHFITRFNQQ-KKADITGVSDEVKRIILNYQWPGNVRELQNLIERVTTLKRH 378 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 L+D+ E + +DL+ + E L+ +LQ+ ++N+ Sbjct: 379 GIMELEDLPSRMISD--KERVLQSFRMDVENAECIDLKSTVDEFESHLILSALQRFQWNK 436 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 +AA L + +KK + Sbjct: 437 NQAANFLAMNRTTLVEKIKKKGL 459 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 121/320 (37%), Positives = 185/320 (57%), Gaps = 9/320 (2%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++ E+ ++ +++S +A VLI GE GTGKE +A +H S R +GPFI +NCA Sbjct: 284 DMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHAIHLGSDRGKGPFIKVNCA 343 Query: 67 ALNENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 ++ E+L++SE+FG+ GAFTGA K PGR ERADGGTLFLDE+ P+ +Q KLLRV++ Sbjct: 344 SIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLDEIGEMPLALQAKLLRVLQ 403 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ER+G ++ ++VN+R++ ATN L + +G FR DL RL + LPPLRER D Sbjct: 404 DREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYYRLNVINLHLPPLRERLED 463 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + +F + + G T A TLL Y WPGNIREL+NVVER+V + Sbjct: 464 IEPLTHFFISKFNDIL-KANVSGITPNAMATLLQYSWPGNIRELENVVERAVNYTRSGLI 522 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 L + + +T ++ Q E++++ +L++ N+ +A Sbjct: 523 ELIHLPHQIISGNTALGQVMNKKTIRH-------QDRLGQIERDMIAAALEKAGGNKTKA 575 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+LL L+ + L K+ + Sbjct: 576 AKLLNLSRSRLYDKLNKYDL 595 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 117/322 (36%), Positives = 178/322 (55%), Gaps = 14/322 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +++G+ F+E + + A D VLI+GE GTGKE++A +H S R PFI++N Sbjct: 333 FADMIGQHPCFIEKMNEARLAAATDSNVLILGESGTGKEMVAQAIHNESKRRNKPFIAIN 392 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRH-PGRFERADGGTLFLDELATAPMMVQEKLLRV 123 C + +LL SELFG+ GAFTGA+K G+FE A+GGTLFLDE+ + +Q LLRV Sbjct: 393 CGGIPRDLLGSELFGYVDGAFTGAKKGGSAGKFELANGGTLFLDEIGEMSLEMQVLLLRV 452 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 I+ E+ R+GG + + V+VR++ ATN DL V +G+FR DL RL + LPPLRER+ Sbjct: 453 IQEKEVMRIGGHKVIPVDVRIIAATNKDLRREVQKGSFREDLFFRLNVMPIVLPPLRERK 512 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+ +F ++ + P FP E L+ Y WPGNIREL+N++ER + + Sbjct: 513 EDIPLLVRHFIERLAHKRDKP-FPEIRSDFLEALMQYDWPGNIRELQNMIERVLNQCTKP 571 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 D+ + F+ + + + + +K+ + +L+Q N Sbjct: 572 VLTAADLPEEIFQPSCSSQVRENVDIS------------RNEIKKQSIIEALKQCNGNIS 619 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA LG++ F + K I Sbjct: 620 KAARYLGISRSTFYRQMDKWNI 641 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 120/327 (36%), Positives = 181/327 (55%), Gaps = 15/327 (4%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + + ++G ++S V + +AP D VLI+GE GTGKELIA +H LS+R P + Sbjct: 553 SHNFEEIIGTSSSMQTVFNAIGQVAPTDYTVLIMGETGTGKELIARAVHSLSARRDRPVV 612 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NCAAL L++SELFGHE G+FTGA ++ G+FE A+GGTLFLDE+ P+ +Q KLL Sbjct: 613 KINCAALPAQLIESELFGHERGSFTGATEKRIGKFELANGGTLFLDEIGELPLELQAKLL 672 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R I+ E+ERVGG + +N R++ ATN +L V G FR+DL RL + +PPLRE Sbjct: 673 RAIQEKEIERVGGKGVILINTRIIAATNRNLQQEVAAGRFRSDLYYRLNVFPIVVPPLRE 732 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R+ DI+ + +F ++ +++ P+ + + LL Y WPGNIREL++V+ERS Sbjct: 733 RQEDILPLTMHFLQKISKKLGKPI-TNIANASLQQLLQYPWPGNIRELEHVLERSSILSQ 791 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 ++ L + + P + SE + + + +L + Sbjct: 792 SATLTLAE-PLRAATTAFPPFVVQSSEEV----------KSIDDAMRLAILAALAKSGNR 840 Query: 302 QK---RAAELLGLTYHQFRALLKKHQI 325 + AAELL + A +KK I Sbjct: 841 IRGTGGAAELLNIKPTTLEARMKKLNI 867 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 177/321 (55%), Gaps = 17/321 (5%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 D+++G++ + + A + VLI+GE GTGKEL+A +H S R + PFI +N Sbjct: 254 FDDIIGDSPELRKCITLAEKSAQSNSTVLILGESGTGKELLAHAIHAASMRRENPFIKVN 313 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAA+ + LL+SE FG+ GAFTGA K G+FE A GGT+FLDE+ +++Q KLLRV+ Sbjct: 314 CAAIPDTLLESEFFGYAKGAFTGAVKSKIGKFELAHGGTIFLDEIGDMNLLLQAKLLRVL 373 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E ERVGG+Q ++V+VR++ ATN +L ++ +G FR DL RL + +PPLR R+ Sbjct: 374 QEMEFERVGGNQTIKVDVRVIAATNRNLRELIRQGRFREDLYYRLNVVEITMPPLRARKE 433 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D+ + + + R++ + G ++ A E L +Y WPGN+REL+NV+ER + Sbjct: 434 DLPALVSHLITSLNRKLGKNV-KGISKDAEEVLFSYDWPGNVRELENVIERVMVTADEEI 492 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY---N 301 + I + R + Q E+ L++ ++ + Sbjct: 493 LTKKNFIQHVNQFRMSSERDVDLMP-------------IEQMEEMLIRKAISKFGNTVEG 539 Query: 302 QKRAAELLGLTYHQFRALLKK 322 ++RAA+ L ++ LKK Sbjct: 540 KRRAAQALNISLATLYNKLKK 560 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 507 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 174/323 (53%), Gaps = 3/323 (0%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + ++G++ +F E+ QV +A + VLI GE GTGKE++A +H LS R + FI+ Sbjct: 137 PGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVARAIHDLSDRKEQAFIA 196 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCA++ LL+SELFGHE GAFTGA R G FE A GT+FLDE+ M +Q KLLR Sbjct: 197 INCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFLDEIGEMDMAMQVKLLR 256 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ + RVG + ++++ R++ ATN +L + E +FR DL RL + +PPLRER Sbjct: 257 VLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLFYRLNVFPINIPPLRER 316 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 +DI +A YF R F + A + + Y WPGN+REL+NV+ER Sbjct: 317 PADIAALAVYFLDSFSRSFGRD-FRDVSPEAEQLMAQYAWPGNVRELRNVIERICIMRSG 375 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + + P A + L L E EK L+Q +LQ+ +N Sbjct: 376 PTLLPEHLPQEIRSTVAPPPLPAELPISIAADLG--LEEAVSAIEKSLIQQALQKTGWNV 433 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 + A L + R ++K+ + Sbjct: 434 LQTAANLKIPRGTLRYKMEKYGL 456 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 507 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 113/323 (34%), Positives = 173/323 (53%), Gaps = 16/323 (4%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + +++G + + V + + AP D VLI GE GTGKEL A +H S R PF+ Sbjct: 140 QKPSSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTGKELAAKMIHQYSKRADKPFVI 199 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCA L E+LL+SELFGH GAFTGA + G FE A+GGTLFLDE+ + Q KLLR Sbjct: 200 VNCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGGTLFLDEIGELTVNTQAKLLR 259 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 VI+ GE+ RVG ++ + V+ R++ AT+ +LP V EG FR DL RL ++LP LRER Sbjct: 260 VIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFREDLYFRLNVITLRLPSLRER 319 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + D+ + ++F + C+ A + Y WPGNIREL+N +ER+V Sbjct: 320 KDDLTALIQHFLQKFCK---GERTMDMHPEALHAMTLYDWPGNIRELENTIERTVVLADG 376 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + ++++ + R + + + EK + L++ +++ Sbjct: 377 NIISIEELPDNIRGR-------------TYEHYGKNGEIALSEVEKNHIIQVLKEKNWHK 423 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AA+ LG++ +K + I Sbjct: 424 PLAAKTLGISLKTLYNKMKMYNI 446 >UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES5_9BACT Length = 1454 Score = 507 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 185/321 (57%), Gaps = 8/321 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 N++G++ +++ E + + VL+ G GTGKELIA LHY S+R F++ C Sbjct: 1136 SNIIGKSPEMMKIFEIIEKVKDTPTTVLLEGPSGTGKELIARALHYSSNRRNKAFVAQYC 1195 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AL E LL+SELFGH G+FTGA G FE ADGGT FLDE++ Q KLLR ++ Sbjct: 1196 GALPETLLESELFGHVKGSFTGAAYDKKGLFEIADGGTFFLDEISDISQSTQSKLLRFLQ 1255 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 GE++RVG ++ +V+VR+VCATN L V G FR DL RL + +PPL+ R D Sbjct: 1256 EGEIKRVGATKTEKVDVRVVCATNTPLMERVKSGEFRLDLYYRLNVIRIDVPPLKNRTGD 1315 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD- 244 I L+A +F + + + + GFT A + L Y WPGN+R+L+N +ER+V + Sbjct: 1316 IPLLAIHFLDKYNKRMNKNVM-GFTAEAMKVLEQYDWPGNVRQLENEIERAVTLAEPNTF 1374 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 D + ++ I S+T ++ + +L++ + E++L+ SL++ ++NQ + Sbjct: 1375 IKPSDFSEEVYRH------IEYSKTIAMLSGKKNLKDAIEELERKLISQSLEKFQWNQTQ 1428 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA+ LGL+ ++++ + Sbjct: 1429 AAKELGLSRQGLIKKMQRYNL 1449 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 507 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 128/319 (40%), Positives = 188/319 (58%), Gaps = 12/319 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 L+G + + + + +AP VLI+GE GTGKEL+A +HY S R PF++L+ Sbjct: 141 FSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKELVAHAIHYRSERAGKPFVALH 200 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAAL+E +L+SELFGHE GAFTGA + GRFE ADGGTLFLDELA + VQ KLLRV+ Sbjct: 201 CAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTLFLDELAEMSLKVQVKLLRVL 260 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 E GE ERVGG + ++V+VR + ATN +L V+EG FR DL RL +Q+PPLRER+ Sbjct: 261 EKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFREDLFYRLNVINIQMPPLRERKD 320 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI +++ YF + GF A + LL++ W GNIREL+N +ER++ + Sbjct: 321 DIPILSNYF-AVKYAKKYKKEIKGFDPEAIKALLSHHWQGNIRELQNTIERAIVLCKSDT 379 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 +D + + +P + + + + EKE++Q +LQ +++ Sbjct: 380 ISVDHLPESIM-----------PDNEYIPVIKIPIGTTLKEAEKEIIQRTLQITNGSKQS 428 Query: 305 AAELLGLTYHQFRALLKKH 323 AA++LG++ + K+ Sbjct: 429 AAKILGISTRKIEYKTKEW 447 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 116/328 (35%), Positives = 173/328 (52%), Gaps = 19/328 (5%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 +A ++ + + +VL +V +A + VL+ GE GTGKEL+A +H +S R P Sbjct: 476 LAFNYQEMVYSSQAISQVLTEVEQVAATNATVLLQGESGTGKELLARAIHNISPRSGKPM 535 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I +NCAA+ LL+SELFGH+ GAFTGA G+FE ADGGTLFLDE+ P+ +Q KL Sbjct: 536 IKVNCAAIPGELLESELFGHKKGAFTGAVSNKVGKFELADGGTLFLDEIGELPLEMQPKL 595 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LR ++ GE+E VGG++ +++VR++ ATN L V +G FR DL R+ +++PPLR Sbjct: 596 LRFLQEGEIEVVGGTEVRKLDVRIIAATNRYLKEEVEKGDFREDLYFRINVFPIEVPPLR 655 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DI ++ E+F + R+ + TE A L Y WPGNIREL+N++ER+ Sbjct: 656 ERKEDIPILVEHFMDKFNRKYGKNIS-FVTEEAMSQLKQYEWPGNIRELENLLERATIVS 714 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + K + P +S ++ + L + Sbjct: 715 RGETLIIPGFESQSQKSKMPLRNNNLS---------------LTTVQRNHILHVLDMCDW 759 Query: 301 NQK---RAAELLGLTYHQFRALLKKHQI 325 AAELL + R ++K I Sbjct: 760 KITGQGGAAELLDMRPSTLRDRMQKLGI 787 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 178/323 (55%), Gaps = 12/323 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 L+G + + + E + +AP VL+ GE GTGKEL+A +H S R F+++NCA Sbjct: 142 GLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELVARAIHAASPRNNALFVAVNCA 201 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ +L+SELFGHE GAFTGA K G+FE ADGGTLFLDE+ PM +Q KLLR ++ Sbjct: 202 AIPHEMLESELFGHEKGAFTGAVKERIGKFELADGGTLFLDEVTEMPMQLQAKLLRALQE 261 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 +ER+GG++P+ V++R+V ATN + + +G R DL RL + LP L+ R+SDI Sbjct: 262 NVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLREDLYYRLNVFRIDLPALKARKSDI 321 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A +F + + +A + L+ Y WPGN+REL+NV+ER+ G Sbjct: 322 ELLATHFLAK--------RRVDISAQAVQVLMQYDWPGNVRELENVLERAAIISGNQQIQ 373 Query: 247 LDDIIIDPFKRRP----PEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + ++T P PL L Q E++L+ +L Q N+ Sbjct: 374 PQHLPAEMLNSNGEFIDATALGHNADTAEAPQNPLCLPNAVEQLERQLIAKALAQTNGNK 433 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 +AA+LL ++ L ++ I Sbjct: 434 SKAAKLLEISERSLWYKLSQYGI 456 >UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH19_9FIRM Length = 739 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 111/320 (34%), Positives = 175/320 (54%), Gaps = 11/320 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G++ V A VL++GE GTGK L A +H+ +R GPFI +NC+ Sbjct: 429 QIIGDSKKVKTAKNFVLKAAQSASTVLLLGESGTGKGLFARAIHFSGNRKDGPFIKVNCS 488 Query: 67 ALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ E LL+SELFG+E G+FTGAQK G+FE A+GGT+FLDE+ P +Q K+LRV++ Sbjct: 489 AIPETLLESELFGYEEGSFTGAQKGGKIGKFELANGGTIFLDEIGDMPFNMQAKMLRVLQ 548 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 E+ER+GG + ++VR++ ATN DL + FR DL RL + +PPLRE SD Sbjct: 549 EREIERIGGHHSIPIDVRVIAATNRDLREEIKANRFREDLYYRLDVLSISIPPLREMASD 608 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I ++ + ++C++ +P +E Y WPGN+REL+N++ER + Sbjct: 609 IPVLTQSLIERICKKHHVP-PKKVSEEVMGVFCRYPWPGNVRELENMLERLLNLVEEDII 667 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 +D + ++ +A L + E++ + +L+ K N+ +A Sbjct: 668 NIDHLPAHLWQHIQSSRYLAS---------GHSLDNMTSEVERDAIINALKATKNNRSKA 718 Query: 306 AELLGLTYHQFRALLKKHQI 325 A+LLGL F LK++ + Sbjct: 719 AKLLGLHRSTFYEKLKRYDL 738 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 506 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 182/319 (57%), Gaps = 12/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++ + + L++LE +AP D VLI GE GTGKEL A +H S R +GPF+++NC Sbjct: 140 NIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFARYIHLNSLRKKGPFLAVNCG 199 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A +E LL +ELFGHE GAFTGA G E A G+LFLDE+ + +Q KLLRVI+ Sbjct: 200 AFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLDEITEMSLTMQAKLLRVIQE 259 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E R+G ++P++V+VR + ATN D+ V G FR DL RL +++PPLRER+ DI Sbjct: 260 REFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYRLNVVNIEIPPLRERKDDI 319 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ YF+ + +K + G +E A L+NY +PGN+REL+N++ER+V +S Sbjct: 320 PLLVAYFSKKYSLLMKKEI-TGVSEEAINLLVNYEYPGNVRELENIIERAVVLCNSSQID 378 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 ++ + D + + + S + EKE ++ L++ N+ AA Sbjct: 379 VEHLPQDLKELKIEVFTKKEGKFMS-----------LEELEKEYIKWILREVGNNKTVAA 427 Query: 307 ELLGLTYHQFRALLKKHQI 325 ++LG+ LK + I Sbjct: 428 QILGIDRVSLWRKLKNYGI 446 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 506 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 123/319 (38%), Positives = 191/319 (59%), Gaps = 15/319 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++ E+ +VLE +AP D VLI GE GTGKE+IA+ +H S R + PFI++NC Sbjct: 137 DIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIHKNSLRKERPFIAINCG 196 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ LL+SELFG++ GAFTGA G E A+GGTLFLDE+ P+ +Q KLLRV++ Sbjct: 197 AIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLDEIGELPLDLQVKLLRVLQE 256 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++ +G ++P +++VR + ATN DL MV EG FR DL R+ + +PPLRER+ DI Sbjct: 257 NEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYRINVIPIHIPPLRERKEDI 316 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +A+YF + C +P +E+ARE LLNY + GN+REL+N++ER+V + Sbjct: 317 IPLAQYFINKFCSRYGIP-KKRLSEKAREKLLNYDYKGNVRELENIIERAVLTTEGEEIT 375 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 DI + KR + +E + + E+ L+ L++ +N +A+ Sbjct: 376 --DIPVTVSKRYILSQELK------------PFKEAKKEFEESYLKNLLEKTDFNISKAS 421 Query: 307 ELLGLTYHQFRALLKKHQI 325 ++ G+T Q ++K++ I Sbjct: 422 KIAGITRAQIYRMIKRYGI 440 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 131/328 (39%), Positives = 184/328 (56%), Gaps = 22/328 (6%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 ++ D ++ F++ L+ V +AP D VLI+GE G GKELIA +H LS+R P Sbjct: 158 LSNNFDEIVTGNPIFMKALQLVEQVAPTDASVLILGETGVGKELIARAIHNLSNRRDRPL 217 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I LNCAAL L+++ELFGHE GAFTGA R PGRF+ ADGGTLFLDE+ PM +Q KL Sbjct: 218 IRLNCAALPATLMENELFGHERGAFTGANCRKPGRFDLADGGTLFLDEVGDLPMELQSKL 277 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ GE ER+GG++ ++V+VR++ AT+ DL A++ EG FR+DL RL +Q PPLR Sbjct: 278 LRVLQEGEFERLGGAETIKVDVRILAATHVDLKALLAEGRFRSDLYYRLNVFPIQCPPLR 337 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI L+ +F C + + E+L Y WPGNIREL+NV+ER+V Sbjct: 338 ERREDIPLLVRHFVKASCEKNGKSI-ELIPRHVMESLEGYPWPGNIRELQNVIERAVIIS 396 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + +D + + E+E + +L+ + Sbjct: 397 RGNKLEIDSLPKMVIAADAAPISP------------------LEVTEREHIIRALETTAW 438 Query: 301 NQ---KRAAELLGLTYHQFRALLKKHQI 325 K AAE+LGL +A ++K I Sbjct: 439 RVGGPKGAAEILGLKRTTLQARMRKLGI 466 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 123/322 (38%), Positives = 175/322 (54%), Gaps = 1/322 (0%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +N++G + V ++ AP + VLI GE GTGKE+IA +HY S R PF+++ Sbjct: 139 RFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEMIARAIHYNSLRKDQPFVTV 198 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 +C L+ENLL+SELFGH G+FTGA G F+ A+ GTLFLDE P+ Q KLLRV Sbjct: 199 DCNTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNGTLFLDEFGNIPLSTQAKLLRV 258 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 I+ E VG + + NVRL+ ATN DL AMV EGTFR DL R+ + P LRER Sbjct: 259 IQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFREDLYYRINVFPIHSPALRERR 318 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI +A +F C E+ P+ +E A L+NY WPGN+REL+N ++R+V Sbjct: 319 DDIPALAFHFLKIFCSELGKPVSE-ISEGAMSLLMNYGWPGNVRELENTMQRAVILSSDG 377 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + + + + + + + EK +Q +L++ N Sbjct: 378 IIRQAHLASIIDNSPRLDLDVPRTSDELKRIKKIAREKSVEEVEKLFVQETLKRNASNVT 437 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 R+AE G+ F+AL+KK+ I Sbjct: 438 RSAEETGMQRTNFQALMKKYNI 459 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 118/321 (36%), Positives = 168/321 (52%), Gaps = 14/321 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 ++G + V + A D PV I GE GTGKEL+A +H L R P++ N Sbjct: 162 FHGMVGHSAQMRRVFHLIEKAAQSDAPVFIYGESGTGKELVARAIHDLGPRSDQPYVQFN 221 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAALNE LL+SELFGH GAFTGA + GRFE A GG +FLDE+ PM VQ KLLRV+ Sbjct: 222 CAALNEALLESELFGHVKGAFTGAFRHRQGRFEAAHGGDIFLDEIGDLPMPVQVKLLRVL 281 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 E ERVG ++ L V+VR++ ATN LP ++++G FR DL R+ V LP LRER+ Sbjct: 282 ETKTFERVGDNRQLSVDVRIITATNKVLPELISQGQFREDLFYRINVIPVHLPSLRERKE 341 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+A+YF ++ + + G + + ++Y WPGN+RELK+ +E + Sbjct: 342 DIPLLADYFIQRLRMKSDKDI-KGLSPQTLRLFMDYSWPGNVRELKSSLEYAFVLADHGH 400 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 + + + PP +++ L +L Q N+ Sbjct: 401 IEPEHLPHNVVVTAPPVAEPRYGNPG-------------HDSQRQQLVQALHQAGGNKSE 447 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA +LG+ ++KH I Sbjct: 448 AARILGINRVTVLNRMRKHGI 468 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 128/344 (37%), Positives = 180/344 (52%), Gaps = 22/344 (6%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 E +++G + + VLEQV +A D VLI+GE GTGKELIA +H LS R + I Sbjct: 382 EDFGDIIGISPAIRGVLEQVELVADSDSTVLILGETGTGKELIARAIHMLSQRKKRTMIK 441 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAA+ LL+S+LFGHE GAFTGA + GRFE AD GTLFLDE+ P+ +Q KLLR Sbjct: 442 VNCAAIPSALLESDLFGHEKGAFTGAIAQKSGRFELADRGTLFLDEVGDIPIDLQPKLLR 501 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 ++ E+ERVGG QP+ V+VR++ ATN DL MV + FR DL RL + +PPLRER Sbjct: 502 ALQEREIERVGGHQPIPVDVRMIAATNRDLTGMVEKRLFRGDLYYRLNVFPILIPPLRER 561 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI LMA+YF + R++ + F+ + LLN WPGN+REL+NV+ER+V Sbjct: 562 REDIPLMADYFMRKTARKMNRAI-EAFSAETMDMLLNLPWPGNVRELQNVIERAVILTKG 620 Query: 243 SDYPL------DDIIIDPFKRR------------PPEDAIAVSETTSLPTLPLDLREFQM 284 L + P + + P Sbjct: 621 PVLHLPATELRHHLAPSAALPSEDAVIPLRAAVLPSAASAPDPLPPPAGSSPNPGDLAGE 680 Query: 285 QQEKELLQLSLQQGKYNQ---KRAAELLGLTYHQFRALLKKHQI 325 E++ + L++ + AA LG+ + +++ I Sbjct: 681 AIERDQILRVLRETNGIVGGPRGAAAHLGMKRTTLLSRMRRLGI 724 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 122/323 (37%), Positives = 187/323 (57%), Gaps = 11/323 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 DN++ + VL+ + +A +D VLI GE G GKE++A+ +H LS R +GP I + Sbjct: 176 QYDNIVASSPKTKRVLDMAAQVAKVDSTVLITGESGVGKEIVANVIHCLSHRSKGPLIKI 235 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLR 122 NC A+ ENLL+SELFG+E GAFTGA+K+ PG FE A+ GTLFLDE+ + +Q KLLR Sbjct: 236 NCGAIPENLLESELFGYEPGAFTGARKQGKPGMFELAEKGTLFLDEVGELSLNLQVKLLR 295 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E+ RVGG +P+ V+VR+V ATN DL MV + FR DL RL +++PPLRER Sbjct: 296 VLQDHEVLRVGGLKPIPVDVRIVAATNKDLMEMVRKEKFRDDLYYRLNVVSIEIPPLRER 355 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+A +F ++ ++ F + L Y WPGNIREL+NV+ER + + Sbjct: 356 REDIPLLALHFLEKINKKYGFN--KRFAPDVIDRLSAYPWPGNIRELENVIERVMVMTKS 413 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + + ++ I SE + L++ EK L++ +L++ + Sbjct: 414 DEIRTIHLPGNIKNLSSLQNDIMFSEI-------MPLKKAVEHVEKHLIEQALKKY-GST 465 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 ++ A L + +KK+++ Sbjct: 466 RKVARALKVNQSTIVRKIKKYKL 488 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 170/321 (52%), Gaps = 2/321 (0%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +L+G++ + + + ++ D VLI GE GTGKEL+A +HY S R +++N Sbjct: 188 FHSLIGKSYLMQNIYDLIEKVSQTDSTVLITGETGTGKELVARAIHYNSHRKDYNLVAVN 247 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAAL E LL+SELFGH G+FTGA + G+FE AD GT+FLDE+ + Q KLLRV+ Sbjct: 248 CAALPETLLESELFGHVKGSFTGAIRDKKGKFELADKGTIFLDEIGELSIPTQVKLLRVL 307 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + +ERVG + ++V++R++ ATN D+ ++ +GTFR DL RL ++LP L+ER Sbjct: 308 QERYIERVGDEKTIKVDIRIIAATNQDILELIEKGTFRKDLFYRLNIISIRLPSLKERTD 367 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+ +F + K + G + A LL Y WPGNIREL+ V+E++V + Sbjct: 368 DIPLLVNHFIEKFNIRFKKNIN-GISPNALRKLLAYSWPGNIRELEGVIEKAVLLEESET 426 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 ++ D ++ + + DL++ E+E Q+ Sbjct: 427 IENIELPTDHSATTNLCLPKPLNAGPDISSYE-DLQKRLDMLEREYFVSVFQKHHGRIGS 485 Query: 305 AAELLGLTYHQFRALLKKHQI 325 A GL +KK + Sbjct: 486 IAACTGLNRRTILNKMKKFSL 506 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 119/322 (36%), Positives = 180/322 (55%), Gaps = 14/322 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 D+++GE+ + + +LI+GE GTGKE+ + +H S R GP+I +N Sbjct: 393 FDDIIGESPRMKKAKSLAHRASQTTSTILILGESGTGKEVFSHAIHKSSIRSNGPYIKVN 452 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 CAAL E+LL+SELFG++ GAFTGA+K PG+FE AD GT+FLDE+ + +Q KLLRV Sbjct: 453 CAALPEDLLESELFGYDEGAFTGARKGGKPGKFELADKGTIFLDEIGDMSLGMQAKLLRV 512 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ ELER+GG++P++V+VR++ ATN DL MV E FR DL RL + LPPLRER+ Sbjct: 513 LQERELERLGGTEPIKVDVRIIAATNRDLHKMVMEHKFRLDLYYRLNVLTIDLPPLRERK 572 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI +A ++ + + + G + L Y WPGNIREL+N++ER++ + Sbjct: 573 EDIGFIARGLIEKINKRLGTDI-QGVRPESITHLCAYDWPGNIRELENILERAIVICDEA 631 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + A+ T L E+E+L +L++ + N+ Sbjct: 632 WILPKHL------------ALPGVMETITLGAEQTLEYALQAAEREILDKTLRRVQGNKV 679 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA +LG+ L K+ I Sbjct: 680 QAARILGIHRSVLYKKLAKYNI 701 >UniRef50_B9M6T3 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=B9M6T3_GEOSF Length = 488 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 126/323 (39%), Positives = 177/323 (54%), Gaps = 15/323 (4%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + D +G + L+V + +AP D VLI+GE GTGKEL A +H S R PF++ Sbjct: 180 DDLDQFVGTGKAMLDVFANIRKVAPTDLTVLILGESGTGKELTAQAIHERSPRKDKPFVA 239 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAA+ +NLL++ELFGHE GAFTGA G+FE AD GT+FLDE+ P +Q KLLR Sbjct: 240 INCAAIPDNLLEAELFGHEKGAFTGAHTTKKGKFEYADNGTIFLDEIGDMPSNLQAKLLR 299 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 ++ +ERVG +VNVR++ ATN DL + EG FR+DL RL + LPP+RER Sbjct: 300 FLQDKIVERVGTVGGKKVNVRVIAATNRDLSVAIAEGKFRSDLYYRLDEFAINLPPVRER 359 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 D +++A+YF + RE L FT+ A + + NY WPGN+RE+ N V RS+ Sbjct: 360 GEDTLILAKYFLNKFSREGG--LAKTFTKEAIDVINNYDWPGNVREIINKVRRSIVMATG 417 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 D+++D K DL EKE ++ + YN Sbjct: 418 RYVTPADLMLDVAKVEDGAGNS-------------DLSSAVAVLEKEKIKEVFKSCNYNI 464 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AA+LLG++ +K + I Sbjct: 465 STAAKLLGVSRPTLYRRMKIYGI 487 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 116/322 (36%), Positives = 174/322 (54%), Gaps = 15/322 (4%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 ++++G + + EVL++V +AP D VL+ GE GTGKEL+A LH S R PF+ + Sbjct: 165 GLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKELVARALHVTSRRSDKPFVPV 224 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAA+ + LL+SELFGH GAFTGA + G FE A+GGTLF+DE+ Q KLLR Sbjct: 225 NCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGGTLFIDEIGETSPGFQAKLLRA 284 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ GE+ RVG S P+QVNVR++ ATN DL + E FR DL RL +++PPLRER Sbjct: 285 LQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFREDLFYRLNVVPLRIPPLRERR 344 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 D+ L+A +F + + T A +L+ + WPGN+REL+N++E++ Sbjct: 345 EDVPLLAAHFLQRFVQRTGSERV--LTPEAVASLVAHDWPGNVRELENIIEQAAALCTGR 402 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + D+ I+ + L + E+ + +L + + Sbjct: 403 EIRAADVQIEARAAPAGGAGV-------------TLADAVEDTERRAITAALARCGNDLG 449 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 R A LG++ +K+ I Sbjct: 450 RVARDLGISGTTLWRKMKRLGI 471 >UniRef50_Q3A203 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A203_PELCD Length = 575 Score = 505 bits (1303), Expect = e-142, Method: Composition-based stats. Identities = 111/323 (34%), Positives = 171/323 (52%), Gaps = 16/323 (4%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + ++ ++ +V + LA + VLI+GE GTGKEL+A LH R P + Sbjct: 262 QSFHRMIATSSKMQQVFGLIETLAQVPSTVLILGESGTGKELVAEALHLSGPRKNRPLVK 321 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAAL++ LL+SELFGH G+FTGA K H GRF++ADGGT+FLDE+ +Q +LLR Sbjct: 322 VNCAALSDTLLESELFGHVKGSFTGAVKDHVGRFQKADGGTIFLDEIGDISPRMQLRLLR 381 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E+ER+G S P++V+VR+V ATN DL V G FR DL RL + LPPLRER Sbjct: 382 VLQEKEVERIGDSTPVKVDVRIVAATNQDLEEKVRSGEFRQDLYYRLKVITLALPPLRER 441 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + DI M ++F + + L G + + Y WPGN+R+L++ +E + Sbjct: 442 KEDIPPMVDHFIQRYNEVLGRNL-QGVDQEVMRAMQAYDWPGNVRQLEHAIEHILIHCTE 500 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 L + + + +QE++ + +L + +N+ Sbjct: 501 PLASLAHVPEEILQGEQAVGKYCADS---------------EEQEQQQILAALDKTDWNK 545 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 +AA LLG+ ++K + Sbjct: 546 AKAARLLGIDRKTLYRKIEKFGL 568 >UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYB5_9BACT Length = 645 Score = 505 bits (1303), Expect = e-142, Method: Composition-based stats. Identities = 118/324 (36%), Positives = 175/324 (54%), Gaps = 22/324 (6%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +LG+++S VL + +AP + VLI+GE GTGKELIA +H +S R + P I++N Sbjct: 332 FAQILGQSDSLKYVLYRAEQVAPTNATVLILGETGTGKELIAFAIHDMSPRKERPMITVN 391 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAAL NL++SELFG E GAFTGA R GRFE A+G TL LDE+ P+ +Q KLLRVI Sbjct: 392 CAALPGNLIESELFGREKGAFTGADTRRIGRFEVANGSTLCLDEIGELPLELQAKLLRVI 451 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 ++ E ER+G ++V+VR+V TN +L + G FR DL RL + +PPLR+R+ Sbjct: 452 QHNEFERLGSPHTIKVDVRIVATTNRNLEEEIRNGRFRQDLYYRLNVFPITVPPLRQRKE 511 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI LM F + R++ + + A + L +Y WPGN+REL++++ER+V Sbjct: 512 DIPLMVHAFVERYSRKLGKQI-TSIQKEAMKALQDYPWPGNVRELESIIERAVILCPGPV 570 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN--- 301 L D + + E++ + L + ++ Sbjct: 571 LQLAD------------------KLEISSPAFSSTVRTLEETERDQILKILSETRWRIEG 612 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 + AA +LG+ RA + K I Sbjct: 613 KNGAAAILGIHPSTLRARMHKLGI 636 >UniRef50_C9YE96 Transcriptional regulatory protein xylR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YE96_9BURK Length = 604 Score = 505 bits (1303), Expect = e-142, Method: Composition-based stats. Identities = 129/331 (38%), Positives = 182/331 (54%), Gaps = 14/331 (4%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 L+G +++F V +AP VL GE G GKE+ A LH S R PF+++NCAA Sbjct: 268 LVGASSAFNAAFHMVRRVAPTPATVLFTGESGVGKEMFARSLHRNSDRAARPFVAINCAA 327 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E L++SELFG E GAFTGA PGRFERADGGTLFLDE+ T ++ Q KLLR ++ G Sbjct: 328 IPETLIESELFGVERGAFTGAGASRPGRFERADGGTLFLDEIGTLSLVAQGKLLRALQEG 387 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E+ERVGG++ ++VNVR+V ATN L V +G+FR DL RL + LPPLRER DI Sbjct: 388 EIERVGGTKTVKVNVRVVAATNEHLREAVRKGSFREDLFYRLNVFPIHLPPLRERRDDIP 447 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG------ 241 L+ ++F + + PGF++RA + L NY +PGNIREL+N++ER+V Sbjct: 448 LLMQHFLNHYRERYQREV-PGFSQRAVKALFNYGFPGNIRELQNLIERAVIMVNDGELID 506 Query: 242 -------TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLS 294 + + + + +S + L + E+E + + Sbjct: 507 VHQLFRGGEELSEGVLSLPASAAGDAGGRLVGGTESSSSHVSLTPGQTLGGAEQEWIAAA 566 Query: 295 LQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 L++ N AA LG+T K+H I Sbjct: 567 LRRSAGNIAAAARQLGITRATLLYRAKQHGI 597 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 505 bits (1302), Expect = e-142, Method: Composition-based stats. Identities = 126/330 (38%), Positives = 177/330 (53%), Gaps = 14/330 (4%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G EV + + +A D VLI GE GTGKEL+A L++ S R PF+ +NCAA Sbjct: 149 IIGNHTRMQEVYKLIGQVANKDVTVLITGESGTGKELVARALYHHSDRKNKPFLGVNCAA 208 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E L +SELFG+E GAFTGA++ H G+FER GGTLF DE+A P+ Q KLLR ++YG Sbjct: 209 IPETLFESELFGYERGAFTGAERTHIGKFERCHGGTLFFDEIAEMPLSTQAKLLRALQYG 268 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E+ERVG QPL+V+VR++ ATN +L V +G FR DL RL + LPPLRER DI Sbjct: 269 EIERVGAEQPLKVDVRVLVATNKNLERAVEQGRFREDLYWRLKIISIHLPPLRERPEDIP 328 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + +YF ++ E + A L ++ WPGN+REL+N V R+V Sbjct: 329 ALVDYFLVRFGEEY-KSPIRRIEDGALAKLKSHAWPGNVRELENTVRRAVVLSSGDVIRE 387 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDL-------------REFQMQQEKELLQLS 294 + + D P + + +L E+ LL Sbjct: 388 EHLRFDSGGHEPSSPEWDKNPWARVERKLEELIPDLLQVGGEAMHESIIDMVERILLSKV 447 Query: 295 LQQGKYNQKRAAELLGLTYHQFRALLKKHQ 324 L+Q NQ +AA +LG++ + R +KK Sbjct: 448 LEQCGNNQVKAARVLGVSRNTLRHRMKKFD 477 >UniRef50_Q022Z3 Transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022Z3_SOLUE Length = 705 Score = 505 bits (1302), Expect = e-142, Method: Composition-based stats. Identities = 114/325 (35%), Positives = 170/325 (52%), Gaps = 19/325 (5%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + ++G + + VL Q+ +AP + VLI+GE GTGKEL+A +H +S R PF Sbjct: 395 LKNEFVEIVGRSAAMNRVLGQIELVAPTNATVLILGETGTGKELVARAVHQMSPRRDRPF 454 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 ++LNCAA+ LL+SELFG+E GAFTGA + GRFE A+ GTLFLDE+ P+ +Q KL Sbjct: 455 VTLNCAAIPTGLLESELFGYERGAFTGALSQKIGRFEMANRGTLFLDEVGDIPLDLQPKL 514 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LR ++ ER+GG++ + ++VRLV ATN +L M+ + FR+DL RL + PLR Sbjct: 515 LRALQEKSFERLGGTKTIPIDVRLVAATNRNLTQMMGDKLFRSDLYYRLKVFPITTSPLR 574 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 + DI ++A +F + RE+ + A + L+ + WPGN+REL+N +ER+V Sbjct: 575 DHPEDIPILARHFMQKYAREMGKQIDT-IPPDALQALVKWPWPGNVRELENFIERAVILT 633 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 S A L E+ L L + + Sbjct: 634 QGSSLR------------------APLAEIRPDAAELPGDSTLEFVERAHLLKILGETGW 675 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 +AA LG+ A++ K I Sbjct: 676 VISKAAARLGMPRTTLNAMMGKLGI 700 >UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC6_9SPHI Length = 646 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 113/328 (34%), Positives = 178/328 (54%), Gaps = 17/328 (5%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + ++G+++ +V ++ +A D VLI+GE GTGKE +A +H LS R P Sbjct: 327 LESDFHGIIGQSSLLKDVFRKIQLVAADDTSVLILGESGTGKERVAHTIHKLSPRKSKPM 386 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 +++NCAAL L++SELFGHE GAFTGA + G+FE+ADGG++FLDE+ P+ Q KL Sbjct: 387 VTVNCAALPLTLIESELFGHEKGAFTGANDKRIGKFEQADGGSIFLDEIGELPLEAQVKL 446 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E+ER+GG+ ++NVR++ ATN +L V EG FR DL RL ++LP LR Sbjct: 447 LRVLQEKEIERLGGNGTKKINVRIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELPSLR 506 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R+ DI L++ +F + + + G + + E L Y WPGNIREL++++ERSV Sbjct: 507 QRKEDIPLLSHHFIKKYSKNASAQIG-GVSAASMEELQQYDWPGNIRELEHLIERSVLLS 565 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + + + + + + E++ + L+ K Sbjct: 566 KEEE-------------ITTIIVPTTTPSLAGSNSGEFRIKTMEEMERDHILSILKMCKG 612 Query: 301 NQ---KRAAELLGLTYHQFRALLKKHQI 325 AAE+L + + +KK I Sbjct: 613 KVFGPGGAAEILNMPSTTLNSKIKKLGI 640 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 114/321 (35%), Positives = 172/321 (53%), Gaps = 6/321 (1%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 ++ ++ + V + ++ +A D VL+ GE GTGKEL+A LH+ S R I +N Sbjct: 149 FGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGESGTGKELVARSLHFNSPRAPNALIPVN 208 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C + ENLL+SELFGH GAFTGA K G E A GTLFLDE+ P +Q KLLR++ Sbjct: 209 CGGIPENLLESELFGHVKGAFTGADKNKTGLCEIAHKGTLFLDEIGELPASLQVKLLRLL 268 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ VG S +++R+V AT +L A V EG FR DL RL + LPPLR+R+ Sbjct: 269 QDREIRPVGASATRTIDIRIVAATARNLEADVAEGVFREDLFYRLNVLHIHLPPLRDRQE 328 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+ E F + +++ + G A LL + WPGN+REL+N++ER+V Sbjct: 329 DIPLLIETFVQEFNKKLDKTI-TGLAPAALSRLLAHTWPGNVRELENLIERAVVLAEGDT 387 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 DD+ D+ ++ Q EK L++ +L + N+ R Sbjct: 388 ITPDDLPPGFGT-----DSAGGPGDALAGFDGYSIKAAQKIFEKRLIEKALAKTGGNRTR 442 Query: 305 AAELLGLTYHQFRALLKKHQI 325 ++LL +++ A +K++ I Sbjct: 443 TSKLLEISHPSLLAKMKEYGI 463 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 129/325 (39%), Positives = 190/325 (58%), Gaps = 7/325 (2%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + + D ++G + + L S A D VLI GE GTGKEL+A+ +HY S R PF Sbjct: 224 LDKAFDIIIGNSGKLKDALTIASKAAETDSTVLIRGESGTGKELVANAIHYASKRKDKPF 283 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I +NCAA+ LL+SELFGHE GAFTGA + G+FE ADGGT+FLDE+ P +Q KL Sbjct: 284 IRVNCAAIPVTLLESELFGHERGAFTGAVTQKIGKFELADGGTIFLDEIGDIPPEIQVKL 343 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRVI+ E ERVGG + ++V+VR++ ATN DL + EGTFR DL RL V LPPLR Sbjct: 344 LRVIQEKEFERVGGIKTIKVDVRIIAATNKDLEKAIKEGTFREDLYYRLNVIPVILPPLR 403 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI L+ E+F ++ +++ + T++A + L+ Y WPGNIREL+N++ER + Sbjct: 404 ERRGDIPLLVEHFIEKLNKKLNKNVKKV-TKKAMQALIYYDWPGNIRELENIIERCITLS 462 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 T +D+ + VS+ + + E ++++ ++Q+ K Sbjct: 463 DTDYIDYEDLPQYIRN-----ETTTVSDDDIIYLGENSELLTMEEYEYKIIKAAIQRYK- 516 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 + +A ++LGLT+ A +K + Sbjct: 517 SFNKAGKVLGLTHKTIAAKARKFGL 541 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 120/321 (37%), Positives = 185/321 (57%), Gaps = 12/321 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 N++GE+ ++ + +SH++ + +LI GE GTGKEL+A +HY S+R F+ ++ Sbjct: 140 FGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELVAKAIHYNSARNNHRFVKVD 199 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C++L E LL+SELFGHE GAFTGA K GRF +AD GT+FLDE+ + VQ KLLRV+ Sbjct: 200 CSSLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIFLDEIGNISLAVQAKLLRVL 259 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E E VG + ++V+VR++ ATNADL V +G FR+DL RL + LPPLRER Sbjct: 260 QDSEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFYRLNVIRIFLPPLRERTE 319 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+A +F ++ GF+ L +Y WPGNIREL+NV+ER+V + Sbjct: 320 DIPLLAAHFLAIHNKK-NRKTVEGFSRDTLNILTSYAWPGNIRELENVIERAVILCKKNR 378 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 +D+ + K L+E Q E++++ +L+ ++++ Sbjct: 379 ITPEDVPLYQEKMGTRPGLS-----------GKPLQELLEQTERQIIINTLEANDADKEK 427 Query: 305 AAELLGLTYHQFRALLKKHQI 325 A++L ++ L K++I Sbjct: 428 TAKILKISRASLYNKLNKYKI 448 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 183/316 (57%), Gaps = 16/316 (5%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + + EV + + +A D VLI GE GTGKEL++ +HY S R +GPF+ +NCAA Sbjct: 153 MVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSRAIHYNSPRNKGPFVVVNCAA 212 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E+LL+SELFG+E GAFTGA +R G+FE A+ GT+ LDE+ M+Q K+LRV++ Sbjct: 213 IPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLDEIGDMSPMLQAKILRVLQEH 272 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 +ER+GG++ + V+VR++ ATN DL ++V G+FR DL RL +QLPPLRER+ DI Sbjct: 273 VIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYFRLNVVQIQLPPLRERKEDIP 332 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+A++F + E + G T L+ Y +PGN+REL+N++ R+V L Sbjct: 333 LLADHFIKKYAAETSKEV-TGVTPEVMAALMAYDYPGNVRELENIIARAVALCSGKVLTL 391 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 D + + +P L+E ++ E+ + ++ + + A+ Sbjct: 392 DVLPPQVVEPKPA---------------LRPLKEVLLEAERRAFRQAVAVAGLDPQAVAD 436 Query: 308 LLGLTYHQFRALLKKH 323 LL + + LK+ Sbjct: 437 LLQVDLDYAKKRLKEW 452 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 113/317 (35%), Positives = 166/317 (52%), Gaps = 4/317 (1%) Query: 10 GEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 G++ ++ + + VLI+GE G GKE+ A +H S PFIS+NC A+ Sbjct: 239 GKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHEASETANAPFISINCGAIP 298 Query: 70 ENLLDSELFGHEAGAFTGAQ-KRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 E L +SELFG+E GAF+GA K G+ E A GGTLFLDE+ P+ +Q KLLRV++ + Sbjct: 299 EALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERK 358 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 RVGG + + ++ R++ ATN DL + +GTFR DL RL + +PPLRER DI+ Sbjct: 359 YYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLHIPPLRERREDIIE 418 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLD 248 + F P+ LL+Y WPGNIREL+NVVER V + Sbjct: 419 LTYTFLNDFSINYNRPI-RDLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQE 477 Query: 249 DIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAEL 308 + E+ + S S L L+E + EK++++ +L+ N+ A+ Sbjct: 478 YLPFH--TNDTLENETSHSLLLSNNNTILSLQEEMDEHEKKIIERALRILDGNKLECAKQ 535 Query: 309 LGLTYHQFRALLKKHQI 325 LG+T LK+ + Sbjct: 536 LGVTRATLYNRLKRLGL 552 >UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YRB5_AZOPC Length = 521 Score = 504 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 117/322 (36%), Positives = 187/322 (58%), Gaps = 12/322 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 DN++G + E+ V +AP + V+I GE G GKELIA +H SSR + PF+ + Sbjct: 201 RPDNMVGNSALMRELYGLVKRVAPTNSTVIIRGESGVGKELIAEAIHKASSRIKKPFVRV 260 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NC+AL ENL++SELFG+E GAFTGA+++H GRFE ADGGT+FLDE+A P VQ KLLR+ Sbjct: 261 NCSALPENLIESELFGYEKGAFTGAERQHSGRFELADGGTIFLDEIADIPFSVQVKLLRI 320 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ + ER+GG+ +Q +VR+V ATN +L M+ TFR DL R+ + +P LRER Sbjct: 321 LQQRQFERIGGTHTIQTDVRIVTATNRNLEEMLQNNTFREDLYYRIHVFPIYVPALRERR 380 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 +DI ++ ++F ++ ++ + + T A + L+ Y WPGN+REL+NV+ER++ Sbjct: 381 ADITILTDHFIQKINKQNQTNV-KRITSGALDMLMMYSWPGNVRELENVIERAMILTTDD 439 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 ++ + +S L + E++++ +L + N Sbjct: 440 VIHSYNLPPSLQ-----------TGVSSDTVKVGRLDLVLGKVERQMIMDTLIANRGNVA 488 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 ++A LG++ +K++ I Sbjct: 489 KSAFQLGISERVMGLRIKRYNI 510 >UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteobacteria RepID=NIFA_KLEPN Length = 524 Score = 504 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 126/322 (39%), Positives = 184/322 (57%), Gaps = 10/322 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +N++G++ + ++++ + ++ D VL+ GE GTGKELIA+ +H+ S R F+ Sbjct: 208 GLENMVGKSPAMRQIMDIIRQVSRWDTTVLVRGESGTGKELIANAIHHNSPRAAAAFVKF 267 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAAL +NLL+SELFGHE GAFTGA ++ GRFE ADGGTLFLDE+ + Q KLLR+ Sbjct: 268 NCAALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLDEIGESSASFQAKLLRI 327 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ GE+ERVGG + L+VNVR++ ATN L V G FR DL RL + LPPLRER+ Sbjct: 328 LQEGEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHFREDLYYRLNVMPIALPPLRERQ 387 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI +A + ++ L ++ A L+ Y WPGN+REL+N +ERS + Sbjct: 388 EDIAELAHFLVRKIAHSQGRTL--RISDGAIRLLMEYSWPGNVRELENCLERSAVLSESG 445 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 D I+ + P A + LD E++ L +L++ + Q Sbjct: 446 LIDRDVILFNHRDNPPKALASSGPAEDGWLDNSLD--------ERQRLIAALEKAGWVQA 497 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA LLG+T Q ++ I Sbjct: 498 KAARLLGMTPRQVAYRIQIMDI 519 >UniRef50_A4VMJ3 Transcriptional regulator FleQ n=69 Tax=Gammaproteobacteria RepID=A4VMJ3_PSEU5 Length = 504 Score = 504 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 122/340 (35%), Positives = 175/340 (51%), Gaps = 21/340 (6%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +L+G + + V + + +A + VLI+GE GTGKE++A LHY S R QGPF+ +N Sbjct: 158 FRSLVGTSRAVQHVRQMMEQVADTEASVLILGESGTGKEVVARNLHYHSKRRQGPFVPVN 217 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C A+ LL+SELFGHE GAFTGA GRFE A+GGTLFLDE+ P+ +Q KLLRV+ Sbjct: 218 CGAIPAELLESELFGHEKGAFTGAITARAGRFELAEGGTLFLDEIGDMPLPMQVKLLRVL 277 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + ERVG ++ +VR++ AT+ DL M+ EGTFR DL RL +++ PLRER Sbjct: 278 QERTFERVGSNRTQNADVRIIAATHKDLEKMIEEGTFREDLYYRLNVFPIEMAPLRERVE 337 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+ +M E + F A +L + WPGN+REL N+VER H Sbjct: 338 DIPLLMNELISRM--EHEKRGSIRFNSAAIMSLCRHDWPGNVRELANLVERMAIMHPYGV 395 Query: 245 YPLDDIIIDPFK-------------------RRPPEDAIAVSETTSLPTLPLDLREFQMQ 285 + ++ + LP LDL+E+ Sbjct: 396 IGVMELPKKFRHVDDDDEQYATSLHDEMEERAAISAPMVVPEAQAMLPVEGLDLKEYLGN 455 Query: 286 QEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 E+ L+ +L+ RAAE L + ++K+ + Sbjct: 456 LEQGLIHQALEDAGGVVARAAERLRIRRTTLVEKMRKYGM 495 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 504 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 128/329 (38%), Positives = 180/329 (54%), Gaps = 7/329 (2%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + + + ++GE+ + V AP D VL+ GE G+GKEL A +H R PF Sbjct: 200 VGYFFNRIIGESPQLQAIYRLVRKAAPTDATVLLRGESGSGKELFARAVHVNGPRRDQPF 259 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I ++CAAL L+++ELFGHE GAFTGA R PG+FE A GGT+F+DE+ P+ VQ KL Sbjct: 260 IKVDCAALPATLIENELFGHERGAFTGADHRVPGKFEAASGGTVFIDEIGELPLPVQGKL 319 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRVI+ E ERVGG+Q ++V+VR+V AT+ DL MV EG FR DL R+ V LPPLR Sbjct: 320 LRVIQDREFERVGGTQAVKVDVRIVAATHRDLARMVAEGRFREDLYYRIKVVEVVLPPLR 379 Query: 181 ERE-SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 ER DI +A +F + R P + A E L YRWPGN+REL+N +E +V Sbjct: 380 ERGAEDIERLARHFVAAVARRH-RLTPPRLSAAAVERLKRYRWPGNVRELENCIESAVVL 438 Query: 240 HGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLRE---FQMQQEKELLQLSLQ 296 + + + P R A ++ + PT P L + E+ + L Sbjct: 439 CEGEILE-EHLPL-PDVDRAALPPPAAAQGVNAPTAPAPLDAGLLPLAEVERRHILRVLD 496 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKHQI 325 K N+ AA +L + + LK++ + Sbjct: 497 AVKGNRTAAARVLAIGRNTLARKLKEYGL 525 >UniRef50_D2L1Y0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1Y0_9DELT Length = 505 Score = 504 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 124/348 (35%), Positives = 181/348 (52%), Gaps = 33/348 (9%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++GE VL +A VLI GE GTGKE+ A LH S R +GPF+++NCAA Sbjct: 151 IVGEHPLIRRVLGLARQVARSKATVLISGESGTGKEMFARYLHACSDRAEGPFVAINCAA 210 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E+LL+SELFGHE G+FTGA R G+FE A GGT+ LDE++ + +Q KLLRV++ Sbjct: 211 LPEHLLESELFGHEKGSFTGAIARKLGKFEMASGGTILLDEISEMDLGLQAKLLRVLQES 270 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E +RVGG++ +QV+VR++ TN L V EG FR DL RL ++LPPLR+R D+ Sbjct: 271 EFDRVGGTETVQVDVRVLATTNRRLEEAVAEGKFRQDLYYRLNVIPLKLPPLRDRGEDVP 330 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +A +F + + L F+ A++ L+ Y WPGN+REL+N++ER+V G Sbjct: 331 RLALFFVDKFRKAYGLSPLT-FSADAKQWLMAYDWPGNVRELQNLMERAVLLAGDGPIRK 389 Query: 248 DDI---------------IIDPFKRRPPEDAIAVSETTSLPTLPLDLREF---------- 282 D F R P A ++ L Sbjct: 390 AHFLLDGDNWQEAGPEAGPDDGFGGREPGAAAGLAAVAGEDGEGDGLAAAARLFDRAPAD 449 Query: 283 -------QMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKH 323 E+ ++ SL + + N+ +AA+LLG++ R L ++ Sbjct: 450 VSGELLPLDVMERHMIIKSLDRTEGNRTQAAQLLGISVRTLRNKLNEY 497 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 116/322 (36%), Positives = 174/322 (54%), Gaps = 16/322 (4%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +LL ++ + V E A + +L++GE G+GKE++A +H S R GPF+++ Sbjct: 142 RFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGKEVLARAVHAESPRAGGPFVAV 201 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 +CAAL E+LL+SELFGHE G+FTGA R G+FE A GGTLFLDE+ +Q LLRV Sbjct: 202 SCAALTESLLESELFGHEKGSFTGAISRRKGKFEAAHGGTLFLDEVGDIGPKLQLDLLRV 261 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 +E RVGG++P++V+VR++ ATN DL +EG FR DL RL + +PPLRER Sbjct: 262 LEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFREDLFYRLNVIPILVPPLRERR 321 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+ E F ++ E+K + G + A L+ + WPGN+REL+NV+ER + Sbjct: 322 EDIPLLVENFVERLSVEMKRRI-EGVSPDAMGALMAHDWPGNVRELRNVLERGAVVATGT 380 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 L D+ + + S + EK + L N Sbjct: 381 VIQLSDLGLPTRLEAASKPGTLAS---------------LEEVEKRHVAAVLAHANGNVS 425 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 ++A +LG+ ++K+ + Sbjct: 426 QSARILGIDRVTLYNKMRKYGL 447 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 116/322 (36%), Positives = 179/322 (55%), Gaps = 1/322 (0%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 ++G + L++ E + +AP VLI GE GTGKEL+A +H LS Q F+ + Sbjct: 139 GFVGIIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGKELVARAIHQLSPAVQHQFVPI 198 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 C+A+ E+L +SELFGH GAFTGA G FE+A+ GT FLDE+ + Q KLLRV Sbjct: 199 ICSAIPESLFESELFGHAKGAFTGATTNRTGLFEQANYGTAFLDEIGELTPLTQTKLLRV 258 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E++RVG S +++N R++ ATN DL V G FR DL RLA +++PPLRER+ Sbjct: 259 LQEREIKRVGESVAIRINFRMISATNRDLEEEVAAGRFREDLFYRLAVVPIRVPPLRERK 318 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 SD+ L+ E+F + R + + A E L+NY +PGN+REL+N++ER V + Sbjct: 319 SDVPLLVEHFLAKYSRLFGKDIRK-ISSYALELLMNYDFPGNVRELENIIERGVAMENSQ 377 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + + + + + L E++++ +LQ+ ++ Sbjct: 378 IILPESLTLTGRRHGGQPAPADDRGSLEADVFNRGLEPALTDFERQMIIKALQKAGNSKT 437 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 RAAELL ++ R +KK++I Sbjct: 438 RAAELLNTSFRSLRYKIKKYEI 459 >UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XH6_DESDG Length = 589 Score = 503 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 124/321 (38%), Positives = 179/321 (55%), Gaps = 4/321 (1%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + +++G ++ V V LA D VL+ GE GTGKEL+A LH+ +R QGPF+ +N Sbjct: 273 RRSMIGRSSVMRGVFRLVESLADTDTTVLVTGESGTGKELVADALHHSGARAQGPFVKVN 332 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C+AL+E LL+SELFGH GAFTGA K GR + A GGTLFLDE+ VQ KLLRV+ Sbjct: 333 CSALSETLLESELFGHVRGAFTGATKDRTGRIQMAHGGTLFLDEIGDISPSVQLKLLRVL 392 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ERVG +P++V+VR+V ATN L A+V G FR DL RL V LP LRER Sbjct: 393 QEKEIERVGEGRPVKVDVRVVAATNKSLRALVARGKFREDLYYRLKVVEVHLPALRERRE 452 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+AE+F + + G A++ L+ Y WPGN+REL++ VE + G + Sbjct: 453 DIPLLAEHFIEEFNEHFHRRVS-GLDSSAQQLLVQYDWPGNVRELRHAVEHAFIMAGGNV 511 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 P + + + A + + + K+ L +L++ N+ + Sbjct: 512 IPAAALPAELMQSGRFSAQSAGTGALRHDAPDAAAQGAEW---KQRLSAALKETGGNKAK 568 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AA LLG++ L++ + Sbjct: 569 AARLLGISRQTMYRRLRELGM 589 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 503 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 122/325 (37%), Positives = 184/325 (56%), Gaps = 4/325 (1%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +N++G + +E E + D VLI GE GTGKEL A +H S R G FI + Sbjct: 257 NFENIVGSSKKIIEAKEMAKIASQSDSTVLIRGESGTGKELFAHAIHDGSLRRYGAFIRV 316 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 NCAA+ ENLL++ELFG+E GAFTGA K PG+FE A+GGT+FLDE+ P +Q KLLR Sbjct: 317 NCAAIPENLLEAELFGYEKGAFTGANKEGKPGKFELANGGTIFLDEIGDMPFDMQVKLLR 376 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 ++ E++R+G + + ++VR++ +TN +L ++ + FR DL RL + +PPLRE Sbjct: 377 ALQEREVQRIGSERVIDLDVRIIASTNRNLEQLIAQDKFREDLYYRLNVFNINVPPLREM 436 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + D+ + + + E+ L + G + A + L +Y WPGNIRELKNV+ERS+ Sbjct: 437 KDDLEKLINFIIKDLNDEMGLNVN-GVSSEANKILNSYHWPGNIRELKNVLERSMNVAKG 495 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTL--PLDLREFQMQQEKELLQLSLQQGKY 300 + D I E+ S + S L+LR + EK ++ +L+Q Sbjct: 496 NIITKDCIPQYLLTWAGAEEQQNNSNSKSHEINLHNLELRSVVKEAEKLAIETALKQTNN 555 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N+K+AAELL + L+++ I Sbjct: 556 NKKKAAELLNIHRSGLYKKLEEYNI 580 >UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KL56_AERHH Length = 709 Score = 503 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 124/329 (37%), Positives = 183/329 (55%), Gaps = 9/329 (2%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 N++ ++ +VLE+V +A D VLI+GE GTGKELIA +H LS+R + +N Sbjct: 373 FANIIYQSAVMEKVLEKVKLVAQSDCTVLILGETGTGKELIAQAIHALSARHDHEMVKVN 432 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAA+ L++S+LFGHE GAFTGA + GRFERA GTLFLDE+ P+ +Q KLLRV+ Sbjct: 433 CAAIPTGLIESDLFGHEKGAFTGALTQRIGRFERAHKGTLFLDEVGDMPLDLQPKLLRVL 492 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + ELERVG S P+ ++VRLV ATN DL +MV FR+DL RL ++LPPLRER Sbjct: 493 QEHELERVGNSNPIAIDVRLVAATNCDLLSMVKNKRFRSDLYYRLNVFPIELPPLRERRE 552 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+ +F ++ + ++ + A + L++ W GNIREL+N++ER+V Sbjct: 553 DIPLLVNFFIKKIAKRMRRTI-TSIPADAMKMLVSLPWYGNIRELENIIERAVVMTRGHV 611 Query: 245 YPL---DDIIIDPFKRRPPEDAIAVSETTSLPTLPL--DLREFQMQQEKELLQLSLQQGK 299 L + + + F + + LP E Q + E+ + +L+ Sbjct: 612 LNLSPDELLPLKGFHKIETLVYDEPARELFREPLPALPQGDEAQGEDERVSIIRALKACN 671 Query: 300 YNQK---RAAELLGLTYHQFRALLKKHQI 325 AA+ LG+ + +K+ I Sbjct: 672 GIVAGERGAAQRLGMKRTTLLSKMKRLGI 700 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 503 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 127/355 (35%), Positives = 191/355 (53%), Gaps = 35/355 (9%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 E ++G FL +LE+ +A VL++GE GTGKE+ A +H++S R GPF++ Sbjct: 147 EGSRTVIGRDRHFLRLLERARTVASSKATVLVLGESGTGKEVFARFIHHVSDRKAGPFVA 206 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 LNCAAL E LL+SELFGHE GAFTGA G+FE A GGTL LDE+ P+ +Q KLLR Sbjct: 207 LNCAALPEGLLESELFGHEKGAFTGAVMAKKGKFELAHGGTLLLDEIGEVPLHLQAKLLR 266 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E++R+GG +P++V+V +V TN DL V +GTFR DL RL ++LP LRER Sbjct: 267 VLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEAVKDGTFRQDLYYRLNVIPIRLPSLRER 326 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+A++F + R PL + AR+ L+Y WPGN+RE++N++ER V Sbjct: 327 PDDIFLLADFFIEKHSRRYNKPL-KKLSAAARQRFLDYDWPGNVREMENLLERGVLLSNG 385 Query: 243 SDYPLDD-----IIIDPFKRRPPEDAIAVSETTSL------------------------P 273 + L D + +P + ++ + P Sbjct: 386 DELELWDFWDDELPPEPAASAELPEPSGPADAEPVDAAEPEASPPTVATEAVAAEASGSP 445 Query: 274 TLPLDLREFQM-----QQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKH 323 L + E++++ +L+Q N+ AA++LG++ R L ++ Sbjct: 446 DSAATLDSALAGRSLREVERQMILQALRQTDDNRTHAAKMLGISVRTLRNKLNEY 500 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 114/319 (35%), Positives = 171/319 (53%), Gaps = 5/319 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G++ EV +V A VLI GE GTGKELIA +HY S + PF+++NC+ Sbjct: 151 NIMGKSEVMQEVFSRVRAAAASRSTVLIQGESGTGKELIARAIHYNSDQADQPFVTVNCS 210 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E LL+SELFGH GAFTGA + GRFE A G++FLDE+ +Q KLLRV++ Sbjct: 211 ALTETLLESELFGHVKGAFTGAVRDRAGRFEEAHRGSIFLDEIGELSQTIQVKLLRVLQE 270 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ERVG SQ +++R++ AT+ DL ++ +G FR DL RL + LPPLR+R D+ Sbjct: 271 REVERVGDSQTRTIDIRVIVATHRDLNELLAQGVFRQDLYYRLKVFPITLPPLRQRREDL 330 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ +F + + G A + Y WPGN+REL+N +E + Sbjct: 331 PLLVNHFIAKQNEATGKRV-TGLAPEAMRLVFEYHWPGNVRELENAIEHAFVLTSGEQIQ 389 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 ++D+ + RP + + R+ Q ++E L L+ ++N+ A Sbjct: 390 VNDLPAEIITPRPSPERAREAGVPRTAGS----RQHHEQPDREQLLALLEANQWNKAAVA 445 Query: 307 ELLGLTYHQFRALLKKHQI 325 LG++ +KK I Sbjct: 446 RQLGVSRTAVWKYMKKWGI 464 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 117/322 (36%), Positives = 177/322 (54%), Gaps = 5/322 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKP-VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + E+ + +A VLI GE GTGKEL+A +H LS+R G F+ +NCA Sbjct: 147 IIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTGKELVARAVHRLSARKSGRFVDINCA 206 Query: 67 ALNENLLDSELFGHEAGAFTGA-QKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AL E+LL++ELFG+E GAFTGA PG FE AD GT+FLDE+ +++Q KLLR+++ Sbjct: 207 ALTESLLEAELFGYEKGAFTGAATAGKPGLFEIADKGTVFLDEIGEMGVLLQAKLLRILQ 266 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + +RVGG Q ++++VR++ +TN +L + G FR DL RL + +PPLRER D Sbjct: 267 ERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASGNFRKDLYYRLKVLPIYVPPLRERRED 326 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 IML+ +YF + E + LL Y WPGNIRELKNVVER V S Sbjct: 327 IMLLVKYFIHKYNNEFGKNIC-DIPPDTERILLEYGWPGNIRELKNVVERGVLIANGSAL 385 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREF--QMQQEKELLQLSLQQGKYNQK 303 + ++ E ++ + + D + EK+ ++ L++ + + Sbjct: 386 SPKYVANISVGKKESESLAGITVDGNTDCVSSDGLDARSLAFMEKQHIENVLKETSWRRT 445 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AA +LG+ +K++ I Sbjct: 446 EAARVLGINRTTLYNKIKEYGI 467 >UniRef50_P19323 Formate hydrogenlyase transcriptional activator n=72 Tax=Enterobacteriaceae RepID=FHLA_ECOLI Length = 692 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 122/328 (37%), Positives = 173/328 (52%), Gaps = 18/328 (5%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + ++G + + VL+QV +A D VLI+GE GTGKELIA +H LS R Sbjct: 374 VDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRM 433 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + +NCAA+ LL+S+LFGHE GAFTGA + GRFE AD +LFLDE+ P+ +Q KL Sbjct: 434 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 493 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E ER+G ++ +Q +VRL+ ATN DL MV + FR+DL RL + LPPLR Sbjct: 494 LRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLR 553 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI L+A+ F ++ R + + TL N WPGN+REL+NV+ER+V Sbjct: 554 ERPEDIPLLAKAFTFKIARRLGRNID-SIPAETLRTLSNMEWPGNVRELENVIERAVLLT 612 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + L + A V + E +L+ L++ Sbjct: 613 RGNVLQLS-LPDIVLPEPETPPAATVVALEG-------------EDEYQLIVRVLKETNG 658 Query: 301 NQK---RAAELLGLTYHQFRALLKKHQI 325 AA+ LGL + +K+ I Sbjct: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 >UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJU0_DESAA Length = 443 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 129/316 (40%), Positives = 192/316 (60%), Gaps = 11/316 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++ + + LE V +A VLI GE GTGKEL A ++HY SSR F+++N AA Sbjct: 135 IITQDDRMKRCLEVVDSVADSKAAVLISGESGTGKELFARQIHYSSSRKDKNFVAVNVAA 194 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E LL+SELFGHE GAFTGA R G+FE A GGTL LDE+ + +Q KLLRV++ Sbjct: 195 LPETLLESELFGHEKGAFTGAINRKIGKFELASGGTLLLDEITEMDIGLQAKLLRVLQES 254 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++RVGG+ P+ V+VR+V TN D+ + +G FR+DL RLA ++LPPLRER SD++ Sbjct: 255 EVDRVGGTSPVNVDVRVVATTNRDVEQAIADGKFRSDLYYRLAVIPLKLPPLRERSSDVI 314 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 L+AE+F + + G T+ A+ TLLN WPGN+REL+N +ER+V Sbjct: 315 LLAEHFIRKYNARDGKNV-KGLTKNAQNTLLNLDWPGNVRELENTIERAVLLCKGDQIDH 373 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 +D+ ++ P A+ S+P++ LR + E++++ +L Q + N+ AA+ Sbjct: 374 NDLFME------PPPPKALPRQDSIPSVSTTLR----EMEEQMIYQALDQTEGNRTHAAQ 423 Query: 308 LLGLTYHQFRALLKKH 323 +LG++ R L ++ Sbjct: 424 ILGISVRTLRNKLNEY 439 >UniRef50_A1AL12 Transcriptional regulator, Fis family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AL12_PELPD Length = 687 Score = 502 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 114/327 (34%), Positives = 173/327 (52%), Gaps = 24/327 (7%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + + D ++G++ VL V +AP VL+ GE GTGKEL+A +H S R + Sbjct: 369 SRFNDQIVGQSEPIQGVLAMVEQVAPTPSTVLVYGETGTGKELVAQAIHNHSPRRDKLMV 428 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NCA+L +L++SELFG E GA+TGA R GRFE ADG +LFLDE+A + +Q KLL Sbjct: 429 KVNCASLPSSLVESELFGRERGAYTGALTRQMGRFELADGSSLFLDEIAELSLELQSKLL 488 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ GE ER+G + ++V+VR++ ATN +L V +G FR DL RL+ + +PPLRE Sbjct: 489 RVLQEGEFERLGSPRTIKVDVRVIAATNRNLLEEVRKGRFREDLYYRLSVFPIVVPPLRE 548 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI L+A F ++ + +R L +Y WPGN+REL+NV+E +V Sbjct: 549 RREDIPLLAWEFVRDFNEKMGKRILR-IAKRDMLALQSYSWPGNVRELRNVIEYAVIVSP 607 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 + + + + P + E+ +Q L++ ++ Sbjct: 608 GDELKIR-LPENIVNAPPQMT-------------------TLEEMERHYIQDVLRRTEWR 647 Query: 302 QK---RAAELLGLTYHQFRALLKKHQI 325 K AA +L L + +KK I Sbjct: 648 IKGEGGAAHILDLNPATLYSRMKKLGI 674 >UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G4X7_GEOUR Length = 726 Score = 502 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 112/324 (34%), Positives = 170/324 (52%), Gaps = 24/324 (7%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + ++G++ + +VL V +A D VLI GE GTGKEL+A + LS R P + +N Sbjct: 413 NEQIIGQSAALDKVLRLVEQVASTDSTVLICGETGTGKELVARAIQELSLRRNKPIVKVN 472 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CA+L L++SELFG E GA+TGA R GRFE ADG T+FLDE++ +Q KLLRV+ Sbjct: 473 CASLPAALVESELFGREKGAYTGALTRQAGRFEVADGATIFLDEISEMSPELQAKLLRVL 532 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + G+ ER+G ++ + V+VR++ ATN +L V +GTFR DL RL + +PPLRER Sbjct: 533 QEGQFERLGSTKTIHVDVRVIAATNRNLAEEVKKGTFREDLYYRLNVFQIVVPPLRERAE 592 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+A F + ++ + + L NY WPGN+REL+NV+E V + Sbjct: 593 DIPLLAWAFVHEFNEKMGKKINR-IAKSDMNALQNYHWPGNVRELRNVIEYGVIVSTGNG 651 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK- 303 + + + + E++ + LQ+ + K Sbjct: 652 LHVR-LPEGSGEEIARPL-------------------LMDEVERQHITGVLQRTGWRIKG 691 Query: 304 --RAAELLGLTYHQFRALLKKHQI 325 AA +LG+ + ++K I Sbjct: 692 ENGAARILGMNPSTLYSRMQKLGI 715 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 502 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 122/320 (38%), Positives = 169/320 (52%), Gaps = 3/320 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +G + +V Q++ +AP V + GE GTGKEL A +H S+R PFISLNCA Sbjct: 193 GFVGNSEGMQKVYAQIAQVAPSVTTVFLQGESGTGKELAARAIHSGSARAGKPFISLNCA 252 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL ENL++SELFGHE GAFTGA GRFE A GGTLFLDE+ +M Q KLLRV++ Sbjct: 253 ALPENLIESELFGHERGAFTGASATRKGRFELAHGGTLFLDEVGELSLMTQAKLLRVLQE 312 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ER+GG + V+VR + ATN +L MV + +FR DL RL + LPPLR R DI Sbjct: 313 RAFERLGGMETHYVDVRFITATNRNLEHMVAKESFRRDLFYRLNVFPIYLPPLRGRPEDI 372 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV-YRHGTSDY 245 + +A +F + + + + L Y WPGNIREL+NV+ER+V Sbjct: 373 LPLANHFIRKFAQANGRENVR-LSLSVMDMLQRYAWPGNIRELENVMERAVLLLGREGLV 431 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + S + P L++ + E+ + +L+ + +A Sbjct: 432 LPQHLPPALHGAHCA-GISGESACAARPGFSGSLQDQLDELERASIVEALEFSQGQMGKA 490 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LGLT +KK++I Sbjct: 491 AASLGLTERIMALRMKKYEI 510 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 502 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 119/321 (37%), Positives = 182/321 (56%), Gaps = 10/321 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 ++ + ++E V+ +AP + +LI GE G GKE++A +H +S R +GPFI + Sbjct: 259 KNSEIIYRSKQMERLIELVNKVAPTESTILIYGETGVGKEVLAKYIHNIS-RSEGPFIKI 317 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQ-KRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 NC A+ ENLL++ELFG+E GAFTGA+ + PG E AD GTL LDE++ P+ +Q KLLR Sbjct: 318 NCGAIPENLLEAELFGYEKGAFTGAKSEGKPGLIEVADKGTLLLDEISELPLSLQVKLLR 377 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E RVGG +P++V+VR++ A+N DL +V EG FR DL RL V +PPLRER Sbjct: 378 VLQEKEFIRVGGIKPIKVDVRIIAASNKDLKELVKEGKFRQDLYYRLNVVPVTIPPLRER 437 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI ++A +F + T E + Y WPGN+REL+NV+ER V Sbjct: 438 VQDIPILAYHFLNMYNEKYGHS--KQLTNEVMEIFMKYPWPGNVRELENVIERIVIISEN 495 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 D+ + + + V + +P L+E E +L++ ++++ + Sbjct: 496 DQITKKDLPGELLNQEETNHSFGVHVSRLMP-----LKEASALVEYQLIKQAIEEC-GSS 549 Query: 303 KRAAELLGLTYHQFRALLKKH 323 +AAE+LG+ LKK+ Sbjct: 550 YKAAEVLGVDQSTIIRKLKKY 570 >UniRef50_A0L4D6 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L4D6_MAGSM Length = 353 Score = 502 bits (1294), Expect = e-141, Method: Composition-based stats. Identities = 111/343 (32%), Positives = 172/343 (50%), Gaps = 25/343 (7%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G A + ++ + + +A D VLI GE GTGKELI +H S R GP I++NC Sbjct: 2 NGIIGSAPAMRKLFKLIERVAAADSTVLIHGESGTGKELICRAIHNTSPRHNGPLIAVNC 61 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ E+LL+SELFGH G+FTGA + PG+F A+ GT+FLDE+ +Q K+LRV++ Sbjct: 62 GAIPEDLLESELFGHAKGSFTGAVRDRPGKFVTANNGTIFLDEIGDMSPKLQVKMLRVLQ 121 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 +E VG + ++VNVR++ AT+ +L V EG FR DL RL +Q+PPLR+R D Sbjct: 122 ERIVEPVGALRSVEVNVRVIAATHKNLSKEVEEGRFREDLFYRLNVVPIQVPPLRDRIED 181 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + + E+F + P + Y W GN+REL+N++ER + Sbjct: 182 VSSLVEHFMEKCAARSNCPPVK-IGAQVMSIFQRYSWKGNVRELENLMERLIVLADDEV- 239 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPL-----------------------DLREF 282 LDD+ + + A E + + D Sbjct: 240 TLDDLPENMLDTSNHTEPRAQEERIPVQAFRVAYNDDDEDEGDGEMVLDDRESVTDFNHQ 299 Query: 283 QMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 Q E +L+ +L + +N+ +AA+LL L +KK + Sbjct: 300 VEQYENQLILNALNRTGWNKNKAAQLLKLNRTTLVEKIKKKGL 342 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 502 bits (1294), Expect = e-141, Method: Composition-based stats. Identities = 112/323 (34%), Positives = 169/323 (52%), Gaps = 9/323 (2%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + + ++ + S L V + A D V+I GE GTGKEL+A+ +H S R PFI Sbjct: 137 QRFEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVANAVHNRSPRLDKPFIK 196 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAA+ ENLL++E+ G+E GAFTGA +R G+ E ADGGT F DE+ +Q KLLR Sbjct: 197 VNCAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGGTFFFDEIGDMSFPLQAKLLR 256 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V+E ERVGG++P+ V++R + AT LP + +G FR DL R+ + LPPLRER Sbjct: 257 VLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLYYRINVLPITLPPLRER 316 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+ +F CR+ + A E L +Y +PGN+RELK+ VE +V Sbjct: 317 ADDIPLLLHFFVAHFCRKQGRQVL-DIAPEAMELLRSYPYPGNVRELKHAVEMAVTFCSD 375 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + + + P L + + E++ + L++ + Sbjct: 376 RVITPSCLPGEIREGSPALQGWRGDAGA--------LESSRKETERQTIINVLKKTGGRK 427 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AA+ LG++ LK++ + Sbjct: 428 MAAAKALGISRETLWRKLKEYNV 450 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 501 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 125/315 (39%), Positives = 179/315 (56%), Gaps = 7/315 (2%) Query: 11 EANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 + + ++ EQ+ +A VLI GE GTGKEL+A +HY S R + PFI +NCAAL E Sbjct: 147 KNSKMSQIYEQLKKIAQSKASVLIQGESGTGKELVARAIHYFSPRCEKPFIRVNCAALAE 206 Query: 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELE 130 +LL+SELFGHE GA+TGA + GRFE A+ GTL LDE++ +Q KLLRV+E E E Sbjct: 207 SLLESELFGHERGAYTGAVAKRIGRFELANEGTLLLDEVSEISPNIQAKLLRVLEEEEFE 266 Query: 131 RVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMA 190 RVGG + ++++VR+V TN DL + +GTFR DL RL + LPPLRER DI L+A Sbjct: 267 RVGGEKTIKIDVRIVATTNRDLAKEIQKGTFREDLFYRLNVVPIHLPPLRERREDIPLLA 326 Query: 191 EYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDI 250 + + E + +RA + L Y WPGN+RELKN+++R+V + + L++ Sbjct: 327 NTYLEKYSSENNSSV-KSIEKRAMDYLSQYNWPGNVRELKNIMQRAVVMGSSEELGLENF 385 Query: 251 IIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLG 310 ++ S + EKEL+ +L++ N+ +AA LL Sbjct: 386 TSLIDIKKSEHTMCNDSVNIKKN------GQSIEDAEKELIFTTLEKTGGNKTKAAGLLK 439 Query: 311 LTYHQFRALLKKHQI 325 +T R L K+ I Sbjct: 440 ITTRTLRNKLNKYVI 454 >UniRef50_Q1MPA8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Desulfovibrionaceae RepID=Q1MPA8_LAWIP Length = 492 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 121/344 (35%), Positives = 188/344 (54%), Gaps = 29/344 (8%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + VL +AP VLI GE GTGKE+ A LH S+R +GPFI++NCAA Sbjct: 143 IIGSNPAIRRVLALAKQVAPSKASVLISGESGTGKEMFARTLHAWSNRSKGPFIAVNCAA 202 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E+LL+SELFGHE G+FTGA R G+FE A GGT+ LDE++ + +Q KLLRV++ G Sbjct: 203 LPEHLLESELFGHEKGSFTGAIARKLGKFELASGGTILLDEISEMDLALQSKLLRVLQEG 262 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E++RVGG++ ++V+VR++ TN D+ V+EG FR DL RL ++LP L ER DI+ Sbjct: 263 EIDRVGGTETIKVDVRVLATTNRDMEKWVDEGKFRQDLFFRLNVIPLRLPSLAERGDDIL 322 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +A +F +E L ++ A L N+ WPGN+REL+N++ER+V G Sbjct: 323 ELANFFINMYTKEYHLKPTK-LSQEATTWLKNHNWPGNVRELQNLMERAVLLAGGGLITP 381 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREF------------------------- 282 + +++ + ++ +T S+ + + Sbjct: 382 NHFLLETEEWPLFDEVPLEQQTESIIPEVITISNTTQALQTHPQSKSTTATTTSSVFPNA 441 Query: 283 ---QMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKH 323 + E+ ++ L+ N+ +AAELLG++ R L ++ Sbjct: 442 VIPLHEMERLMIIKGLEATSGNRTQAAELLGISIRTLRNKLNEY 485 >UniRef50_B8J0D0 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrionaceae RepID=B8J0D0_DESDA Length = 379 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 130/377 (34%), Positives = 180/377 (47%), Gaps = 56/377 (14%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 MA D ++G++ S EV + + +AP D VL+ GE GTGKEL+ LH SSR PF Sbjct: 1 MALNTDGIIGQSTSLAEVFKVLGKVAPTDSTVLVTGESGTGKELLVRALHSNSSREDKPF 60 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + +NC A+ + LL+SELFGHE GAFT A + PGRFE ADGGT+FLDE+ + +Q K+ Sbjct: 61 VPINCGAIPKELLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLSLQVKI 120 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E+ERVGGS +V+VR+V ATN DL A V G FR DL RL + LPPLR Sbjct: 121 LRVLQEKEIERVGGSGSKKVDVRIVAATNRDLEAEVAAGRFREDLYYRLNVIPLHLPPLR 180 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER D++++A +F C + K P+ + AR L Y WPGN+REL+N +ER Sbjct: 181 ERGGDVLVLARHFLTHFCGKKKRPVL-VLDDDARRVLSAYTWPGNVRELENFMERLSILV 239 Query: 241 GTSDYPLDDII------------IDPFKRRPPEDAIAVSETTSLPTLPLDLREFQM---- 284 D+ + + A + + P + Sbjct: 240 DGDVVHPQDLPGKILDQVGDIASLPEVEDIAAGADEAGAVENIVAAAPSTGMDAVENEKM 299 Query: 285 ---------------------------------------QQEKELLQLSLQQGKYNQKRA 305 E L+ +L + + +A Sbjct: 300 AAASAAAPDNGAGQQAGTFVWPDLSVLEARGLTLKDFLDAVEGRLIDEALDKALGVKNQA 359 Query: 306 AELLGLTYHQFRALLKK 322 AELLG+ LKK Sbjct: 360 AELLGIKRTTLIEKLKK 376 >UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSN4_9DELT Length = 519 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 124/318 (38%), Positives = 181/318 (56%), Gaps = 12/318 (3%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G+++S L+V + + +AP VL++GE GTGK LIA +H LS R + PFI +NCA+ Sbjct: 199 IVGKSSSMLQVRQMMEKVAPTRATVLLLGESGTGKTLIAGIIHELSERGKFPFIKVNCAS 258 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L ENLL+SELFG+E GAFTGA++ PGRFE A GT+FLDE+ P +Q KLLR ++ Sbjct: 259 LPENLLESELFGYEKGAFTGAERSKPGRFEEAHRGTIFLDEIGEMPAGLQAKLLRFLQER 318 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ER+GG + +V+VR++ ATN +L V EG FR DL RL + +P LRER DI Sbjct: 319 EFERLGGVKTHRVDVRVIAATNKELDKEVQEGRFREDLYYRLNVFPIWVPSLRERREDIP 378 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + +F +M RE L + + + L+ Y WPGNIRE++N++E+ L Sbjct: 379 SLINHFLDKMAREYGRRLV--LSNSSLDYLVEYEWPGNIREMENLMEKLSIMSEGQIVAL 436 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 D+ D + + + + EK+ + +LQ+ + Q RAA Sbjct: 437 KDLPSDMQQEKVCPGKVQEQAR----------DHSLLDMEKKEILSALQRNSWIQSRAAR 486 Query: 308 LLGLTYHQFRALLKKHQI 325 LGLT Q +KK + Sbjct: 487 ELGLTQRQMGYRIKKFNL 504 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 114/316 (36%), Positives = 174/316 (55%), Gaps = 2/316 (0%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + +V + +AP + VLI GE GTGKEL+A LH LS R PF+++NCAA Sbjct: 165 MVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGKELVAKTLHELSPRKNKPFVAVNCAA 224 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + E L++SE+FGHE GAFTGA +R G FE A+ GTL LDE+ P+ Q KLLRV+E Sbjct: 225 IPETLIESEIFGHEKGAFTGAIERRAGCFELAEEGTLLLDEIGEMPIGTQAKLLRVLEDR 284 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 R+G ++VR++ ATN + V +G R DL RL + +PPLRE + DI Sbjct: 285 RYRRLGSKVETPIDVRVLAATNKNPDQAVADGELRGDLYYRLNVFNIHMPPLREHKEDIP 344 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 +A+ M + + G + + LL+Y WPGN+REL+N +ER+V Sbjct: 345 AIAQRMIADMTSKHDRAI-EGMDDEMQARLLSYDWPGNVRELRNTMERAVILCTGDRLQA 403 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 + RP + A +E + + +++ + E+ L+ +L+ N+ RAAE Sbjct: 404 QHLPPGFGTARPLKTAAVTAEPPA-NAVQVEVGTTVDEAERLLILKTLESTHNNKTRAAE 462 Query: 308 LLGLTYHQFRALLKKH 323 +LG++ LK++ Sbjct: 463 ILGISLKTLHNKLKEY 478 >UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis family n=1 Tax=Persephonella marina EX-H1 RepID=C0QPW4_PERMH Length = 443 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 185/323 (57%), Gaps = 10/323 (3%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 E ++G + + +V + + AP D PVLIIGE GTGKEL A +H S+R PF+ Sbjct: 126 EENKEMIGTSEAMKKVFQLIRKFAPTDYPVLIIGETGTGKELTARAIHERSNRADKPFVV 185 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAA+ +LL++ELFG+E GAFTGA K+ G+ E A+GGTLFLDE+ P +Q K+LR Sbjct: 186 VNCAAIPHDLLEAELFGYEKGAFTGADKKRIGKIEYANGGTLFLDEIGDMPYDLQSKILR 245 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 ++ ER+G ++ +VR++ ATN DL V EG FR DL RL+ ++LPPLR+R Sbjct: 246 FLQEYTFERIGSNETKTADVRIIAATNVDLDQAVKEGKFRRDLYYRLSVLTIKLPPLRDR 305 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 D ++MA+YF + +E+ + G T A E + ++ WPGN+REL N + ++V Sbjct: 306 GEDPVIMAKYFVERYSKELGKNI-KGLTADALEVIRDHPWPGNVRELINTIRKAVVLTDK 364 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 ++D+ + + + L+L+ E+ LL+ + K N Sbjct: 365 EFIDVEDLDLKVKCN---------PQGSGNGEDILNLKRNIEDLERRLLKEAFILAKGNI 415 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 + A++LG++ + L++KH I Sbjct: 416 SKVAKMLGISRPKVYKLMEKHGI 438 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 500 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 119/322 (36%), Positives = 180/322 (55%), Gaps = 1/322 (0%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 Y + ++G + V +A +LI GE GTGKELIA +H S R PF+ + Sbjct: 142 YFERIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTGKELIARAIHEQSDRANHPFVVV 201 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NC + ENL++SELFGH G+FTGA G F A GT+FLDE+ M +Q KLLRV Sbjct: 202 NCGGIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHKGTIFLDEIGELSMPLQVKLLRV 261 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ G ++VGG++ + V+ R++ ATN +L V +G FR DL RL + +PPLRER+ Sbjct: 262 VQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDGNFREDLFYRLNVIELNVPPLRERK 321 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 SDI ++A++F + +++ + + A + L Y +PGN+REL+N++ERSV T+ Sbjct: 322 SDIRVLAQFFVEKFSKDLGKEVIK-LSSYALDMLEKYSFPGNVRELENLIERSVALSTTN 380 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + + + KRR E T + L E E+ L+ +L+ N+ Sbjct: 381 IILPESLSLAVHKRRWIEGVPGRRFDLEEVTKGVALDEILADIERAYLKKALESSGGNKN 440 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 RAAELLG+++ FR L K + Sbjct: 441 RAAELLGISFRSFRYRLDKLNV 462 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 500 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 124/314 (39%), Positives = 179/314 (57%), Gaps = 16/314 (5%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++ + QV + + VLI GE GTGKEL A +H S+R + PFI +NC+A Sbjct: 377 IVCRDERIATLKSQVLQVGRSNSTVLITGESGTGKELFAHSIHNASNRRKEPFIKVNCSA 436 Query: 68 LNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 + L ++ELFG+E GAFTGA+K+ PG+FE AD GT+FLDE+ P+ +Q KLLRVI+ Sbjct: 437 IPGELAEAELFGYEDGAFTGARKQGKPGKFELADCGTIFLDEIGDMPLALQSKLLRVIQD 496 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E+ERVGG + +V+VR++ ATN DL MV EGTFR DL R+ +++PPLR+R DI Sbjct: 497 KEIERVGGVKARKVDVRIIAATNRDLKRMVTEGTFREDLYFRINVVELKIPPLRDRRKDI 556 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A+ F + ++ + G TE A E L Y WPGNIREL+N++ER + + Sbjct: 557 PLLADTFIRKYNNQLGRRV-EGITEAALEALTRYDWPGNIRELENIIERMLNYRESGLIE 615 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 L D+ + R A A + E E +Q +L + N+ +AA Sbjct: 616 LQDLPEEIVGRPGGMAAKAT--------------QTLAVMEMETIQAALAEAGGNKSKAA 661 Query: 307 ELLGLTYHQFRALL 320 LLG++ + L Sbjct: 662 RLLGISRSKLYEKL 675 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 500 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 139/323 (43%), Positives = 188/323 (58%), Gaps = 13/323 (4%) Query: 4 YKDNLL-GEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 +N++ G S V +QV +A + VLI+GE GTGKELIAS +HY S R P + Sbjct: 206 GFENMVVGHTASMRRVFDQVRRVAKWNSTVLILGESGTGKELIASAIHYNSPRAHQPLVR 265 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 LNCAAL E LL+SELFGHE GAFTGA K+ GRFE+ADGGTLFLDE+ M Q KLLR Sbjct: 266 LNCAALPETLLESELFGHEKGAFTGAVKQRKGRFEQADGGTLFLDEIGEISPMFQAKLLR 325 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ GELERVGGSQ ++VNVR+V ATN DL V +G FR DL RL +++PPLRER Sbjct: 326 VLQEGELERVGGSQTVKVNVRIVAATNRDLEHEVEQGKFREDLYYRLNVMAIRVPPLRER 385 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 +DI +AE+ ++ R+ L T+ A L+++RWPGN+REL+N +ERS Sbjct: 386 SADIPELAEFLLDKIARQQGRKL--KLTDSALRLLMSHRWPGNVRELENCLERSAIMSED 443 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 D + + A + + +E+ + +L+Q + Q Sbjct: 444 GTISRDVVSLTGLDHDATPLAPVPEVDLA--------DDSLDDRER--VIAALEQAGWVQ 493 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 +AA LLG+T Q ++ I Sbjct: 494 AKAARLLGMTPRQIAYRVQTLNI 516 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 118/332 (35%), Positives = 174/332 (52%), Gaps = 10/332 (3%) Query: 1 MAEYKDN------LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 +A+YKD + G++ ++ + + VLI+GE G GKE+ A +H S Sbjct: 140 VAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHEASE 199 Query: 55 RWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQ-KRHPGRFERADGGTLFLDELATAP 113 + PFIS+NC A+ E L +SELFG+E GAF+GA K G+ E A GGTLFLDE+ P Sbjct: 200 AAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMP 259 Query: 114 MMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDV 173 + +Q KLLRV++ + RVGG + + ++ R++ ATN DL + +GTFR DL RL Sbjct: 260 LDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVS 319 Query: 174 VQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVV 233 + +PPLRER DI+ + F P+ LL+Y WPGNIREL+NVV Sbjct: 320 LHIPPLRERREDIIELTYSFLNDFSINYNRPI-RDLPSSIMHELLHYNWPGNIRELRNVV 378 Query: 234 ERSVYRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQL 293 ER V + + ++ A S S L L+E + EK++++ Sbjct: 379 ERLVVFATDGIIKQEYLPFH--TTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKKVIER 436 Query: 294 SLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +L+ N+ A+ LG+T LKK + Sbjct: 437 ALRILNGNKLECAKQLGVTRATLYNRLKKLGL 468 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 124/328 (37%), Positives = 185/328 (56%), Gaps = 5/328 (1%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + + ++G+ + L+V + + +AP D PVLI+GE GTGKEL+A L+ S R PF+ Sbjct: 138 SADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKELVARALYLHSPRSDKPFV 197 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 ++NCAA+ + LL+SELFGHE GAFTGA +R G+FE+A GGT+FLDE+ P Q K+L Sbjct: 198 AINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTVFLDEIGDMPPAAQAKML 257 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R+++ ERVGG++ +Q +VR++ ATN DL A+V + FR DLL RL V LPPLR+ Sbjct: 258 RLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFREDLLYRLNSFTVTLPPLRD 317 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI + +F R++K + G A L ++RWPGN+REL+N + +V + Sbjct: 318 RTGDIEPLVSHFVTAANRKLKKNV-RGVDAAALAVLESHRWPGNVRELQNAMRYAVVQAV 376 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQ----QEKELLQLSLQQ 297 D + P L + + Q ++ LL L+ Sbjct: 377 GEVITPDCLPASLRGAAAPPGDALELTALITSLLRVGATDIYRQVTHTVDRALLTAVLEH 436 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 NQK+AA+ LG++ RA L+ + Sbjct: 437 VHGNQKQAADRLGISRTTLRAKLQTLGL 464 >UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH02_SYNFM Length = 510 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 122/318 (38%), Positives = 181/318 (56%), Gaps = 16/318 (5%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + S L V + +AP VL++GE GTGK L+A LH LS R PF+ +NCA+ Sbjct: 198 MVGRSPSMLVVQRHIEKVAPSKASVLLLGESGTGKTLVAQMLHELSIRSSAPFVKINCAS 257 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L ENLL+SELFG+E GAFTGA + PGR E A+GGT+FLDE+ +Q KLLR ++ Sbjct: 258 LPENLLESELFGYEKGAFTGAVRSKPGRIEEAEGGTVFLDEVGELTPALQAKLLRFLQDK 317 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E ER+G ++ V+VR++ ATN DL A+V EGTFR DL RL +Q+PPLR R+ DI Sbjct: 318 EFERLGSTRTRVVDVRVLAATNRDLAAVVAEGTFREDLYYRLNVFPIQIPPLRARKEDIP 377 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + +F ++ RE + G T A L Y WPGN+RE++N+VER V + + Sbjct: 378 DLLHHFLDRISREYGRRI--GITNAAMALLAGYDWPGNVREMENLVERMVIMADEDEIGV 435 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 + + ++ +S + E++ + +L++ +NQ R A+ Sbjct: 436 NVLPPFLSEQMTGSGGETLSR--------------IEKMERKEILAALERNGWNQTRTAK 481 Query: 308 LLGLTYHQFRALLKKHQI 325 LG+T Q ++K + Sbjct: 482 ELGITLRQIGYRVRKFGL 499 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 118/319 (36%), Positives = 179/319 (56%), Gaps = 5/319 (1%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 L G++ +E++E +S +AP + +LI+GE GTGKEL+A +H S R P + +NCA Sbjct: 139 ELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELVARAIHRQSKRADKPMVEVNCA 198 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E L++SELFGHE GAFTGA ++ G+F+ A GT+FLDE+A + Q K+LR+++ Sbjct: 199 AIPEELIESELFGHEKGAFTGATEKKRGKFDIAHEGTIFLDEVADMSLKAQAKILRILQE 258 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 + ERVGG++ +Q++VR++ ATN DL + EG FR DL RL +++PPLR R+ DI Sbjct: 259 KKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDLFYRLNVIPLKVPPLRSRKEDI 318 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+AE F + P + A L+ + WPGN+RELKN +ER ++ Sbjct: 319 PLLAERFLSDFALKEGEP-GKTIQDDALALLMEHSWPGNVRELKNFIERLAIMTTSNVIT 377 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + DI P E L RE +M EK+ + L++ N + A Sbjct: 378 VHDIPPLPRDGHKVEPFREPG----FELLAGSFREAKMDFEKQYISRKLREFDGNISKTA 433 Query: 307 ELLGLTYHQFRALLKKHQI 325 E +GL +K + + Sbjct: 434 ESIGLERSNLHKKIKAYGL 452 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 499 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 119/332 (35%), Positives = 176/332 (53%), Gaps = 10/332 (3%) Query: 1 MAEYKDN------LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 +A+YKD + G++ ++ + + VLI+GE G GKE+ A +H S Sbjct: 224 VAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHEASE 283 Query: 55 RWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQ-KRHPGRFERADGGTLFLDELATAP 113 + PFIS+NC A+ E L +SELFG+E GAF+GA K G+ E A GGTLFLDE+ P Sbjct: 284 AAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMP 343 Query: 114 MMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDV 173 + +Q KLLRV++ + RVGG + + ++ R++ ATN DL + +GTFR DL RL Sbjct: 344 LDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVS 403 Query: 174 VQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVV 233 +Q+PPLRER DI+ + F P+ LL+Y WPGNIREL+NVV Sbjct: 404 LQIPPLRERREDIIELTYSFLNDFSINYNRPI-RDLPSSIMHELLHYNWPGNIRELRNVV 462 Query: 234 ERSVYRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQL 293 ER V + + ++ A S S L L+E + EK++++ Sbjct: 463 ERLVVFATDGIIKQEYLPFH--TTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKKVIER 520 Query: 294 SLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +L+ N+ A+ LG+T LKK ++ Sbjct: 521 ALRILNGNKLECAKQLGVTRATLYNRLKKLRL 552 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 499 bits (1286), Expect = e-140, Method: Composition-based stats. Identities = 113/318 (35%), Positives = 181/318 (56%), Gaps = 5/318 (1%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +N++G + E+ ++ +A D +LI GE GTGKEL+A LH+ S+R PF+++ Sbjct: 138 RFENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVARALHFNSTRQHQPFVAI 197 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NC+AL ENLL+SELFGH+ G+FTGA + G FE A+GGT+FLDE+ + +Q KLLRV Sbjct: 198 NCSALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFLDEVNSMAQPLQTKLLRV 257 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ ++ RVG ++ + +NVR++ ATN L + G FR DL RLA V++P LRER Sbjct: 258 LQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLYYRLAVIPVEMPALRERP 317 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+ +F + + +A E L YRWPGN+REL+N VER+ + Sbjct: 318 DDIPLLVSHFLQKNAAQTGTE-AKKIDPKAIEMLAKYRWPGNVRELENAVERACALCDDA 376 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 D+ + E + + L E+ +QE+ ++ +++ +++ Sbjct: 377 LIRTTDLPPQVIRHATAPPV----EHSGTLPVGQTLDEYIREQERRYIEETIKFNGNSRE 432 Query: 304 RAAELLGLTYHQFRALLK 321 +AA++LG++ L+ Sbjct: 433 KAAKMLGISMATLYRKLE 450 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 499 bits (1286), Expect = e-140, Method: Composition-based stats. Identities = 115/322 (35%), Positives = 194/322 (60%), Gaps = 16/322 (4%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 +N++GE+ + V A + VLI+GE GTGKE+ A +H S+R +GPF+ +NC Sbjct: 265 ENIIGESEPIVMAKAIVEKAAHTNSNVLILGESGTGKEIFAHAIHSESNRHEGPFVKVNC 324 Query: 66 AALNENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ +LL+SELFG+EAGAFTGA+K G+FE A+ GT+FLDE+ P+ +Q KLLRVI Sbjct: 325 AAIPSDLLESELFGYEAGAFTGAKKEGKIGKFEIANEGTIFLDEIGDMPLHMQVKLLRVI 384 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+E+VGG ++N+R++ ATN +L +V EG FR DL RL +++PPLRER + Sbjct: 385 QEREVEKVGGVASKKINIRIIAATNRNLERLVEEGKFREDLYYRLNVVTIEIPPLRERGN 444 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV-YRHGTS 243 DI+L++ + ++ ++ + G ++ A + L Y W GN+REL+N++ER++ + Sbjct: 445 DIILISNHLIKKLSVDLDKKV-KGISKEAEQYLKIYEWKGNVRELENILERAINIMENSE 503 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + D+ + ++ + +P L++ + EK + L+L+ N+ Sbjct: 504 IIQVKDLPKEITGKK-------------VSMVPKKLQDILAESEKNAIILALRAADGNKS 550 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA++L + ++K++I Sbjct: 551 KAAKILDIGRTSLYEKIEKYKI 572 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 499 bits (1286), Expect = e-140, Method: Composition-based stats. Identities = 111/323 (34%), Positives = 171/323 (52%), Gaps = 3/323 (0%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 E LLG++ EV +++ + D VL+ GE G+GKEL A +H S R GPFI Sbjct: 145 EGYGELLGQSKIMQEVFDRIEKVVTADVTVLLQGESGSGKELAAHEIHRRSKRKNGPFIV 204 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NCAA+ E L++SELFGHE G+FTGA +R G+FE A+ GT+ LDE+ + Q KLLR Sbjct: 205 MNCAAVPETLIESELFGHERGSFTGATERRMGKFEMANNGTILLDEIGDMSLSTQSKLLR 264 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ + ER+GG++ L V+VR++ AT+ DL + EG FR DL R+ +++PPLR+R Sbjct: 265 VLQEQKFERLGGTETLAVDVRIISATHRDLEEEIEEGRFREDLYYRINVVNIKIPPLRKR 324 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + DI L+ F ++ + + A + L Y WPGNIR+LKN +E ++ Sbjct: 325 KEDIPLLVNRFIQHFSKKHYKNVV-SISNDAMKKLSAYNWPGNIRQLKNTIESAIVLTNN 383 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + D+ D + D+ + EK+ + L++ N Sbjct: 384 DVLDISDLSEDIIREEKTPDSTKNVHYHLSFREAK--KILIENFEKDFISKKLEECGGNI 441 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AE L + + +K Q+ Sbjct: 442 SHTAEALDMHRQNLQQKIKDLQL 464 >UniRef50_C4XJ05 Fis family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XJ05_DESMR Length = 447 Score = 498 bits (1285), Expect = e-140, Method: Composition-based stats. Identities = 129/319 (40%), Positives = 176/319 (55%), Gaps = 15/319 (4%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++GE+ + V Q+ +A D VL++GE G GKEL A LH S R +GPF+++NCA Sbjct: 134 NMVGESRAMRAVFSQLLKVAATDATVLLLGESGVGKELAALSLHEKSGRAKGPFVAVNCA 193 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ E LL+SELFGHE GAFTGA R G+FE+A GTLFLDE+ P Q K+LR IE Sbjct: 194 AIPEGLLESELFGHERGAFTGAVARKIGKFEKAAQGTLFLDEIGDMPPETQAKILRAIES 253 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 + ERVGG +PL+++VR+V AT+ DLP M+ +G FR DL RL V+LPPLR+R DI Sbjct: 254 RQFERVGGGKPLRLDVRVVAATHRDLPEMIRQGRFREDLYHRLNVFPVRLPPLRDRREDI 313 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+A F + A + LL + WPGN+RELKNV+ER+ G + Sbjct: 314 PLLAGRFLE------GFRPGARLSVEALQRLLAHDWPGNVRELKNVLERATVLAGGDEIA 367 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + + DL E+ L++ +L + Q RAA Sbjct: 368 PRHLP---------GLSGQGPAEATAGDEAADLDSRLAAYERTLIEAALSRTGGVQSRAA 418 Query: 307 ELLGLTYHQFRALLKKHQI 325 LLG+ +KK I Sbjct: 419 ALLGIKERSLWHRVKKLGI 437 >UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regulator, Fis family n=10 Tax=Desulfovibrionales RepID=Q311G4_DESDG Length = 576 Score = 498 bits (1285), Expect = e-140, Method: Composition-based stats. Identities = 119/319 (37%), Positives = 172/319 (53%), Gaps = 12/319 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++ + S VL QV+ + P L+ GE GTGKEL+A +H S R P I LNCA Sbjct: 256 NIVAASKSMRLVLNQVAQVGPSRATALLRGESGTGKELLAEAIHQASPRRDMPLIKLNCA 315 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL +L++SELFG++ GAFTGA + G FE A GTLFLDE+ Q K+LR I+ Sbjct: 316 ALPSDLVESELFGYQKGAFTGAVQNKKGLFELAHKGTLFLDEIGELSASAQAKVLRAIQE 375 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 E++R+G Q + V+VRL+CAT+ L +V G+FR DL R+ V +PPLRER DI Sbjct: 376 QEIQRLGSEQTISVDVRLICATHQHLEELVESGSFREDLYYRINVFPVFIPPLRERREDI 435 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +AE+F + E + + + A + L Y WPGNIRELKN +ER+V Sbjct: 436 LPVAEHFLKEYAEEYQKSI-KRISTPAIDLLTQYHWPGNIRELKNCIERAVLVCDEQVIR 494 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + + ++ L E + E+ELL +L++ + N +AA Sbjct: 495 TYHMPPSLQ-----------TAESTATDSSLSFCEAVAKFEQELLVDALKKARGNMLQAA 543 Query: 307 ELLGLTYHQFRALLKKHQI 325 L ++Y +KK+ I Sbjct: 544 RDLRVSYRIVNYKVKKYGI 562 >UniRef50_C6HWP3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWP3_9BACT Length = 375 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 132/364 (36%), Positives = 184/364 (50%), Gaps = 40/364 (10%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + E+ +G++ E+L V+ +A D VLI GE GTGKE IA LH S R PF Sbjct: 12 IEEFSGRFVGQSKRVRELLTLVARVAKSDSTVLITGESGTGKERIARILHEASPRAHAPF 71 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + +NC A+ E L++SELFGHE GAFTGA PGRFE A+GGT+F DE+ P+ +Q KL Sbjct: 72 VPVNCGAIPEGLMESELFGHEKGAFTGAVTGRPGRFELANGGTIFFDEIGELPLPLQVKL 131 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ ERVGG + NVR++ AT+ +L M EG FR DL RL+ V++PPLR Sbjct: 132 LRVLQEKTYERVGGVRVQTANVRVLAATHRNLEEMSREGRFREDLFYRLSVIPVEIPPLR 191 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI L+ +F + E ++ L +Y WPGN+REL+NV+ER + Sbjct: 192 ERREDIPLLMTFFQRRW-EEEGRGDPVELGMDVQKALCDYPWPGNVRELENVMERLHVLY 250 Query: 241 GTSDYPLDDIIIDPFK--RRPPEDAIAVSETTSLPTLPLD-------------------- 278 G +D + + PE + ET+S P P Sbjct: 251 GGETVTVDLLPEKIRQHLSSIPEPLPSPMETSSDPLPPQSDSSPDAELPVLLDGASASLL 310 Query: 279 -----------------LREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLK 321 L F E+ L+Q +L++ N+ +AAELLG+ LK Sbjct: 311 PDPARLAGSIDAESDFSLTAFMGDIERTLVQKALERAGGNRSKAAELLGINRTTLIEKLK 370 Query: 322 KHQI 325 + I Sbjct: 371 RFGI 374 >UniRef50_B3E653 PAS modulated sigma54 specific transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3E653_GEOLS Length = 463 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 118/328 (35%), Positives = 180/328 (54%), Gaps = 9/328 (2%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + ++S L V + + +A L+ VLI GE GTGKEL+A+ +H S+R + + Sbjct: 132 CGSFGGFVSISSSMLPVFQTIGAVAGLESTVLITGESGTGKELVAAAIHRNSARNERAMV 191 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 ++NCAAL E+L++SELFG++ GAFTGA H G+FE+AD T+FLDE+ P Q KLL Sbjct: 192 TVNCAALPEHLVESELFGYQRGAFTGAVGNHRGKFEQADKSTIFLDEVGDLPANAQAKLL 251 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ + R+G + ++V+VR++ ATN +L MV +G FR DL RL + +PPLRE Sbjct: 252 RVLQERTVSRLGSEKDIRVDVRIIAATNRNLQQMVADGLFREDLYYRLNVISLPVPPLRE 311 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI+ MAE+F + ++ P G E R LL+Y +PGN+REL++ +ER+V Sbjct: 312 RREDILPMAEFFLKRFSERMERPQL-GICEATRSVLLSYDYPGNVRELEHGIERAVALCP 370 Query: 242 TSDYPLDDIIIDPFKRRP--------PEDAIAVSETTSLPTLPLDLREFQMQQEKELLQL 293 S D+ R P A + P L + + E+ L+ Sbjct: 371 GSCISPADLPEQFVAARSSGGPDWQHPLSVRAGDQYRPDDAAPATLANAREESERRLILD 430 Query: 294 SLQQGKYNQKRAAELLGLTYHQFRALLK 321 +L + + AA+LL ++ LK Sbjct: 431 ALVRTGGRKAEAAKLLNISRKTLWEKLK 458 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 121/324 (37%), Positives = 175/324 (54%), Gaps = 5/324 (1%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 + L+G + EV+ + +A VL+ GE GTGKEL+A LH S R PF++L Sbjct: 149 APEGLVGNSAPIREVVRMIEAVAYSATTVLVTGESGTGKELVARALHARSPRRAQPFVAL 208 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NC AL E LL+SELFGH GAFTGAQ+ G F+ ADGGT+FLDE+ P Q +LLRV Sbjct: 209 NCGALTETLLESELFGHVKGAFTGAQRDQKGLFDAADGGTIFLDEIGDIPPATQVRLLRV 268 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ GEL+RVG ++ ++V+VR++ AT+ DLP +V G FR DL RL + LP LR+R Sbjct: 269 LQEGELKRVGSAESVRVDVRVIAATHRDLPRLVKAGKFREDLFYRLNVINIPLPSLRDRV 328 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 D+ L+A +F + + + A E L YRWPGN+REL+N +ER+V Sbjct: 329 DDVPLLAHHFLRRYAERLGKRV-RALAPDAIELLCGYRWPGNVRELENAIERAVVLCRGE 387 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDL----REFQMQQEKELLQLSLQQGK 299 D+ R P A + L + + + EK ++ ++ Sbjct: 388 AVTGGDLPPAVTGRTAPLVREAPAGGDEAVWLTMSYATAKEQSLRRFEKGYVETLMRHCD 447 Query: 300 YNQKRAAELLGLTYHQFRALLKKH 323 N AA G+ F+ +L+K+ Sbjct: 448 NNISAAARKAGMDRSNFKRVLRKY 471 >UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTW4_9BACL Length = 668 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 104/319 (32%), Positives = 169/319 (52%), Gaps = 6/319 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + +++ +A + PVLI GE GTGKEL A +H S R + PF+++N AA Sbjct: 347 IIGSSRVIQRAIQRAQIVAATNAPVLITGESGTGKELFARAIHEASPRGKQPFVAVNIAA 406 Query: 68 LNENLLDSELFGHEAGAFTGAQ-KRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 L L+ SELFG+E GAFTGA + G+FE A+GGTLFLDE+ P+ +Q LLRV++ Sbjct: 407 LPRELIASELFGYEPGAFTGAHPRGKKGKFEEANGGTLFLDEIGDMPLELQVYLLRVLQE 466 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ++ R+G + V+VR++ ATN +L V G FR DL RL ++LPPLR+R +D+ Sbjct: 467 KKITRLGSTTSEAVDVRIIAATNQNLAQRVANGEFRLDLFYRLNVVEIELPPLRDRLADV 526 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +A++F ++ + F Y WPGN+REL+NV+E SV T Sbjct: 527 PSIAQHFLSLFAQKHDKSV-ERFDPEVLNLFKQYHWPGNVRELQNVIEYSVIFSETDSIT 585 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 ++D+ + ++ +++ + +E+ L+ L++ N + A Sbjct: 586 VNDLPDYLTRSIFKNLEVSDKPIYDT----IEMSDAIENEERRLIAYWLEKTNGNISQVA 641 Query: 307 ELLGLTYHQFRALLKKHQI 325 L + +K + + Sbjct: 642 RQLRRSRTTIYRKIKHYGL 660 >UniRef50_A6G018 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G018_9DELT Length = 628 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 125/314 (39%), Positives = 178/314 (56%), Gaps = 6/314 (1%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 ++G + ++ + +A + VL+ GE GTGKEL A +H S R + PF+++NCAA Sbjct: 317 VVGSSPQMKKLHVFLERVAATNATVLVNGESGTGKELAARMIHARSPRAERPFVAINCAA 376 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 + ENLL+SE FGHE GAFTGA RH G FERA GTLFLDE+A Q ++LRV+E Sbjct: 377 VPENLLESEFFGHEKGAFTGAVARHQGVFERAHTGTLFLDEIAEMAPATQARMLRVLENR 436 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 RVGG++ ++V+VRLV AT+ DL +V +G FR DLL RL+ +LPPLRER DI Sbjct: 437 SFTRVGGTEEVKVDVRLVAATHRDLRKLVADGQFREDLLYRLSVIHTKLPPLRERRGDIP 496 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + +F + ++ + + A L+NYRWPGN+REL+NVVER++ L Sbjct: 497 ELVRHFCSVLGDDMGRHV-ETVADDALAVLVNYRWPGNVRELRNVVERALVLGDGPVLEL 555 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 DD+ + P D S S + + E++ + +L+ N+ RAA Sbjct: 556 DDLPPELQHAGPHPDQPGASPVVSPQKVLP-----LAELEQQAIAAALEATGGNKARAAA 610 Query: 308 LLGLTYHQFRALLK 321 LLG+ LK Sbjct: 611 LLGIDRTTLYRKLK 624 >UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZV27_DESOH Length = 510 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 123/328 (37%), Positives = 181/328 (55%), Gaps = 22/328 (6%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + ++++G+++ VL ++ +A D VL++GE GTGKEL+A +H LS R Sbjct: 195 LEYNHEHIIGQSDGLKYVLYKIEQIADSDTTVLVLGETGTGKELVARAIHNLSRRKNRTM 254 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + +NCAAL NL++SELFGHE GAFTGA RH GRFE A+G TLFLDE+ P+ +Q KL Sbjct: 255 LKVNCAALPTNLIESELFGHEKGAFTGAHARHTGRFEVANGTTLFLDEIGELPLELQPKL 314 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ GE ER+G S +V+ R++ ATN +L V G FR DL RL + +PPLR Sbjct: 315 LRVLQDGEFERLGSSHSTKVDARIIAATNRNLEEEVRNGNFREDLWYRLNVFPITMPPLR 374 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R DI L+ E++ ++ R + + + ETL Y WPGN+REL+NV+ER+V Sbjct: 375 DRLDDIPLLVEFYVKKISRRMGKTI-ETIPSKIMETLQAYPWPGNVRELENVLERAVINS 433 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + L D E + E++ + L+Q ++ Sbjct: 434 SGTKLRLVD------------------ELKRPFRGLSSSEKTLAAVERDHIVRVLEQTQW 475 Query: 301 N---QKRAAELLGLTYHQFRALLKKHQI 325 + AAE+LGL RA ++K I Sbjct: 476 KVGGKNSAAEILGLDRSTLRARMRKLNI 503 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 117/333 (35%), Positives = 181/333 (54%), Gaps = 10/333 (3%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A D ++G + + ++ + + AP D VLI GE GTGKEL+A ++ S R PF+ Sbjct: 140 AVAADAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGKELVARAVYQHSLRADKPFL 199 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NC A+ E LL+SELFG+E GAFTGA R G+ E+A+ GT+FLDE+ P+ +Q K+L Sbjct: 200 VINCVAIPETLLESELFGYEKGAFTGATGRKVGKIEQANRGTVFLDEIGDMPLSIQAKIL 259 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R+++ +ER+GG Q + V+VR++ ATN DL A V G FR DL RL + +PPLRE Sbjct: 260 RLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQFREDLYYRLKVVTMAMPPLRE 319 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI L+ YF + RE+ P PG ++ A L WPGN+REL N V++++ + Sbjct: 320 RPGDIPLLVRYFLARYSREMGQP-DPGVSDEAMALLTTQPWPGNVRELGNTVKKALIFNL 378 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLP---------TLPLDLREFQMQQEKELLQ 292 + D++ + SL + + +++ Sbjct: 379 GAPLGPDEVQKASGEPLRGGGPAEADPGDSLARYVRRELASGRESLFEDLMDRFGLLVIR 438 Query: 293 LSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +L+ N+ +AA LLGL+ A ++K+ + Sbjct: 439 EALEATGGNRSQAARLLGLSRPTLLAKIEKYGL 471 >UniRef50_A6GJF4 Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJF4_9DELT Length = 507 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 124/320 (38%), Positives = 179/320 (55%), Gaps = 2/320 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 N++G S +V ++++ ++ D VL+ GE GTGKEL+A +H+ S R + PF+++NCA Sbjct: 189 NIIGNHKSMAQVYDRIARVSSADTTVLLRGESGTGKELVARAIHFASPRAEAPFVAVNCA 248 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL E L+SELFGHE GAFTGA GRFE ADGGTLFLDE+ Q KLLRV++ Sbjct: 249 ALPEGTLESELFGHERGAFTGAIGARKGRFELADGGTLFLDEIGELRPHTQVKLLRVLQE 308 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ERVGG+ + +VR++ AT+ADL A + G FR DL RL + LPPLRER DI Sbjct: 309 RRFERVGGATTRRCDVRVLTATHADLEAAMARGEFREDLYYRLNVFEIMLPPLRERGEDI 368 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +A++F + + P A LL + WPGN+REL+N +ER+V Sbjct: 369 LALADFFVERYGPR-QRPPVTRIGHDAARHLLAWDWPGNVRELENCIERAVLLTNDGVIE 427 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLP-TLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + + P A A + S L E E+E+L+ +L N+ A Sbjct: 428 AEHLPPTLRGAAGPSRARASNTPASRAVAEGRTLDEALEAVEREILERALADSGGNRASA 487 Query: 306 AELLGLTYHQFRALLKKHQI 325 A LG++ + +KK+++ Sbjct: 488 ARALGISERRMGLRVKKYRL 507 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 127/324 (39%), Positives = 182/324 (56%), Gaps = 17/324 (5%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 ++++ + V+E +A D VLI GE GTGKEL A +H S R PF+ Sbjct: 203 NSFNDIIYTSEKMRFVVEMAKKVARTDTTVLIRGESGTGKELFARAIHLESPRRTKPFVP 262 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLL 121 LNCAA+ E+LL+SELFG+ GAFTGA+K G E A GTLFLDE+A P +Q KLL Sbjct: 263 LNCAAVPESLLESELFGYVEGAFTGAKKGGKQGLLEFAHEGTLFLDEIAELPTHLQAKLL 322 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ G++ R+GG + + V++R++ ATN +L MV EG FR DL RL +Q+PPLRE Sbjct: 323 RVLQEGKVRRIGGQEEIPVDIRIIAATNRNLEGMVREGKFREDLYFRLNVFPLQIPPLRE 382 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI ++ +F + + F TE A L Y WPGN+REL+NV+ER++ Sbjct: 383 RVEDIEVLTYHFLNTFAKRRGIQYFE-ITENALNKLKAYSWPGNVRELQNVIERALTLAD 441 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 DII+D + + L E Q EKEL++ +L+Q + Sbjct: 442 DGVIEAKDIILD--------------NPQNTYFVARTLEEAVNQVEKELIERALKQYP-S 486 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 ++AA LG+T+ R +KK ++ Sbjct: 487 IRQAARSLGVTHTTLRNKIKKLKL 510 >UniRef50_A8V246 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V246_9AQUI Length = 454 Score = 497 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 130/326 (39%), Positives = 190/326 (58%), Gaps = 2/326 (0%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + +Y +++G + + + +AP D PVLIIGE GTGKEL A L LS R PF Sbjct: 127 LCQYLCSIIGSSPYMKNICKLAGEVAPTDLPVLIIGETGTGKELFARGLWKLSKRKDKPF 186 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I++NCAA+ ENL++SELFG+E GAFTGA+ + G+FE A+GGT+FLDE+ P+ Q KL Sbjct: 187 IAINCAAIPENLIESELFGYEKGAFTGAETQKKGKFEIANGGTIFLDEIGEMPLEAQSKL 246 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ G RVGG + + V+VR++ ATN DL MV EG FR DL RL +LPPLR Sbjct: 247 LRVLQEGSFYRVGGEEEINVDVRVIAATNKDLSQMVKEGKFREDLYYRLNVITFKLPPLR 306 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER+ DI + E I + GFT+ E L + W GNIREL+NVV RS+ Sbjct: 307 ERKEDIPYIVEC-IINKNNKKINKNIEGFTKDYIEKLKSRYWKGNIRELENVVIRSMVFC 365 Query: 241 GTSDYPLDDII-IDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGK 299 S + D+ ++ K P+ + + + ++ + + EK L++ L++ Sbjct: 366 RDSILSITDLEFLEEGKEEIPDLYDKLKDIIEQLINHENAKQTKEKIEKILIENVLKKSN 425 Query: 300 YNQKRAAELLGLTYHQFRALLKKHQI 325 +N ++A++LG+ R L+K I Sbjct: 426 FNLSKSAQILGINRATLRKKLEKLNI 451 >UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDL8_9DELT Length = 590 Score = 497 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 126/327 (38%), Positives = 185/327 (56%), Gaps = 12/327 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + ++GE+ + +V V A D VLI GE GTGKELIA +H S R + F+ ++ Sbjct: 262 FNQIVGESRAMRQVYAIVRKAAGTDATVLITGESGTGKELIARAVHVNSPRREQAFVKVD 321 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C L E L+++ELFGHE GAFTGA + PG+FE ADGGTLF+DE+ P+ +Q KLLRV+ Sbjct: 322 CTTLPEALIENELFGHERGAFTGAHRTAPGKFEVADGGTLFIDEIGELPLTLQGKLLRVL 381 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E ERVGG+ ++ ++R++CAT+ DLPAMV+ G FR DL R+ ++LPPLR+R S Sbjct: 382 QDREFERVGGTTTIRTDIRVICATHRDLPAMVDAGAFREDLYYRVRVVPIELPPLRDRGS 441 Query: 185 -DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 D + + E+F + R P+ T+ A+ LL + +PGNIREL+N +E +V Sbjct: 442 ADRLRLIEHFVDRYGRRHGRPIHR-VTKAAQARLLEHDFPGNIRELENCIESAVVLSDEG 500 Query: 244 DYPLDDIIIDPFKRRPP-------EDAIAVSETTSLPTLPLDLRE---FQMQQEKELLQL 293 +DD+ + P K + S S P L L L + E+ ++ Sbjct: 501 TIDVDDLPLAPRKAKRGRTQQGSVPTETGQSSGHSGPNLGLQLGDPTLSLAAIERAHIEA 560 Query: 294 SLQQGKYNQKRAAELLGLTYHQFRALL 320 +Q + NQ AA LG+ + L Sbjct: 561 VVQACEGNQSEAARRLGIGRNTLARKL 587 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 497 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 111/322 (34%), Positives = 183/322 (56%), Gaps = 14/322 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 D+++G++ + + EQ+ ++ VLI GE GTGKELIA +H S+R F+++N Sbjct: 321 FDDIIGQSEAMKRLKEQIKSISNSPSTVLIQGESGTGKELIAQSIHNNSNRRSKSFVAIN 380 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRH-PGRFERADGGTLFLDELATAPMMVQEKLLRV 123 C A+ ++L++SELFG+E GAFTGA++ PG+FE A+ GTLFLDE+ P+ +Q LLRV Sbjct: 381 CGAIPKSLIESELFGYEEGAFTGAKRGGCPGKFELANEGTLFLDEIGEMPLDMQVNLLRV 440 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ G + R+GG++ + V+VR++ ATN +L + +G FR DL RL+ + +PPLRER Sbjct: 441 LQEGCITRIGGNKCVDVDVRIIAATNKNLKKEIEDGNFREDLYYRLSVIPIYVPPLRERN 500 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI ++ E+F ++ L P + E LL+Y WPGN+REL+N +E V +G + Sbjct: 501 GDIGILIEHFLKIKADKLGK-LIPEIRKNIYENLLSYGWPGNVRELENCIENIVNMNGNT 559 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 + ++ I + ++ + + EK + + + Q N Sbjct: 560 SFNFENRTIKKDVNCYSDVSLEYDMCS------------LEELEKRAISICINQCGGNIS 607 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +A +LG+ +KK+ I Sbjct: 608 KACRILGINRSTLYIKIKKYNI 629 >UniRef50_Q1ZUC7 Formate hydrogenlyase transcriptional activator n=4 Tax=Vibrionaceae RepID=Q1ZUC7_PHOAS Length = 717 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 117/331 (35%), Positives = 175/331 (52%), Gaps = 11/331 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 D+++ ++ +VLEQV+ +A D VLI+GE GTGKELIA +H LS R + + +N Sbjct: 379 FDDIISQSEVMNKVLEQVALVASCDSTVLILGESGTGKELIARAIHKLSLRSKTDMVKMN 438 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAA+ L +SELFGHE GAFTGA + GRFE+A GTLFLDE+ P+ +Q KLLR + Sbjct: 439 CAAIPAGLFESELFGHERGAFTGAISQRVGRFEQAHKGTLFLDEIGDMPLELQPKLLRAL 498 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E+ERVG + + V+VR+V ATN DL V E FR DL RL +Q+PPLRER Sbjct: 499 QENEIERVGKNALISVDVRIVVATNVDLLRRVEEKKFRNDLYYRLNVFPIQIPPLRERAE 558 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI L+ ++F ++ +++ + + + WPGN+REL+N VERSV + Sbjct: 559 DIPLLVKHFTRELAKKMGKTI-TAIAAEDLAVMSVFPWPGNVRELRNFVERSVILTRGNV 617 Query: 245 YP--LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELL-----QLSLQQ 297 + ++ P + + + + + K ++ +L+ Sbjct: 618 LNVPVHELKAVSHSACVPTEKVPPVNPEAAGVINTPEPAVKGDVVKPIIDKADVIKALKA 677 Query: 298 GKYNQK---RAAELLGLTYHQFRALLKKHQI 325 AA LGL + ++K I Sbjct: 678 CHGVVAGPNGAANQLGLKRTTLLSRMQKMGI 708 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 111/319 (34%), Positives = 169/319 (52%), Gaps = 13/319 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +N++GE+ + +V + V A VLI GE G GKELIA+ +H LS R P I ++ Sbjct: 140 FENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGKELIANAIHNLSPRKAKPLIKVH 199 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CA+ E +L+SELFGHE GAFTGA R GRFE A G++FLDE+ M VQ KLLRV+ Sbjct: 200 CASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEGSMFLDEIGEVSMAVQIKLLRVL 259 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + ERVGG + ++V+VR++ ATN +L + FR DL RL + +P LRER+ Sbjct: 260 QERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFREDLYYRLNVVHIHVPALRERKE 319 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D+ L+ F ++ E + +A+ L Y WPGNIR+L+N +E +V Sbjct: 320 DLPLLIATFLKEIAEENGKKI-TSIDPQAQSALHAYDWPGNIRQLRNCIESAVIMSSGPV 378 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 ++D+ + + + EKE++ +L+ K N+ + Sbjct: 379 IHIEDLSEPIRSLGETSS------------IRIPIGVSMEDAEKEIILQTLEAQKGNKSK 426 Query: 305 AAELLGLTYHQFRALLKKH 323 A++LG+ L ++ Sbjct: 427 TADVLGIGRKTLYLKLDQY 445 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 113/331 (34%), Positives = 170/331 (51%), Gaps = 11/331 (3%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 N+ + V+E +AP VLI GE GTGKEL+A+ +H S R P I++N Sbjct: 264 FGNIFSVSPKMEHVIELAKQVAPTKATVLINGESGTGKELLANAIHQHSDRKDAPLITIN 323 Query: 65 CAALNENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 C A+ ENL +SE FG+ +GAFTGA+K PG FE ADGGTLFLDE+ P+ +Q KLLR Sbjct: 324 CGAIPENLAESEFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEIGDLPLNMQAKLLRA 383 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ G RVGG +P+ V+VR++ ATN +L +V FR DL R+ ++LPPLRE+ Sbjct: 384 LQEGSFYRVGGIEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRINVANLELPPLREKT 443 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DIM + + F + + + + +TL Y WPGN+RELKNV+ER V Sbjct: 444 EDIMPLTKRFIDHFSQVHGIEITE-IEQAVMDTLEEYHWPGNVRELKNVIERLVIFSTQG 502 Query: 244 DYPLDDIIIDPF---------KRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLS 294 + + +++ E + + + E++ + S Sbjct: 503 KISIKALPSYLHPGPKFGSQDQQQLHEQLHRQHSQDDNFSNKSNSESKIDELERKTILDS 562 Query: 295 LQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 L++ +N+ + A L + +K I Sbjct: 563 LKKHSFNKAKVARELNIPRSTLYYRMKVLNI 593 >UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4R9_DESRM Length = 568 Score = 496 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 125/328 (38%), Positives = 187/328 (57%), Gaps = 10/328 (3%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 + ++G+ + ++LE + +A + VL+ GE GTGKEL A +H LSSR GPF+ Sbjct: 245 SPVFPGIIGKGPALQKILEIIKQVAKSESTVLLRGESGTGKELFAHSIHELSSRNSGPFV 304 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKL 120 ++NCAA+ E LL+SELFG+E G+FTGA+K PG+ E A+ GTLFLDE+ P+ +Q KL Sbjct: 305 AINCAAIPEALLESELFGYEEGSFTGARKGGKPGKVELANNGTLFLDEIGDMPLTLQAKL 364 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRVI+ +E VG S PL +NVRL+ AT+ +L M+ GTFR DL RL + +PPLR Sbjct: 365 LRVIQEKNIEPVGCSYPLPINVRLIAATHRNLEEMIGTGTFREDLFFRLNVIPIFIPPLR 424 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 +R D L+ Y+ + C +K P F + A + L+ Y WPGNIREL+N+VE V H Sbjct: 425 QRPEDTELLLHYYLRKYCILLKKP-FKILSYAALQQLVKYHWPGNIRELENLVEYLVNIH 483 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 +D+ I + E+ + T + Q + L L + + Sbjct: 484 NQDIISPEDLPITIQQPIKEENQPIGIQPVEPQTRKSSGQRSQAE-----LIQMLNRFGW 538 Query: 301 N---QKRAAELLGLTYHQFRALLKKHQI 325 + +K+AA LG++ +KK+++ Sbjct: 539 HTDGKKKAAAALGVSLATLYRRIKKYKL 566 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 496 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 122/322 (37%), Positives = 181/322 (56%), Gaps = 3/322 (0%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 +++LGE+ E + A VLI GE G GKE A +H GPFIS+N Sbjct: 298 FEDILGESQPISETKKMARKAARSKASVLITGESGVGKEQFARAIHGAGVTNNGPFISVN 357 Query: 65 CAALNENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 CAA+ +NLL+SELFG+ GAFTGA+K G+FE A+ GTLFLDE+ ++ Q K+LRV Sbjct: 358 CAAIPDNLLESELFGYAEGAFTGAKKNGKAGKFELANHGTLFLDEIGDMSLLTQVKILRV 417 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E+ER+GG+ P+ V+ RL+ ATN DL MV EGTFR DL RL +Q+PPLR R+ Sbjct: 418 LQEREIERIGGTHPIPVDFRLIAATNKDLKQMVREGTFREDLYHRLHVIPIQIPPLRFRK 477 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+ E ++C+ + + +Y WPGN+REL NV+ER Sbjct: 478 QDIPLIVEEHLQKLCQMYNAE-EKTLDKEVLRLMFHYNWPGNVRELINVLERLFALSDDV 536 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 D+ + + R + + V SLP ++ + ++E+ L++ L++ K N+ Sbjct: 537 HIRAKDLPEEFYYRDMEQKKL-VPMIQSLPAKQEAMKVVRDEEERGLIERVLKEAKGNKS 595 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 +AA LLG++ L + +I Sbjct: 596 KAAALLGISRATLYNKLSRFKI 617 >UniRef50_P40734 Formate hydrogenlyase transcriptional activator n=63 Tax=Enterobacteriaceae RepID=FHLA_SALTY Length = 692 Score = 496 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 121/328 (36%), Positives = 176/328 (53%), Gaps = 18/328 (5%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + ++G + + VL+QV +A D VLI+GE GTGKELIA +H LS R Sbjct: 374 VDSEFGEIIGRSEAMYNVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRSGRRM 433 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 + +NCAA+ LL+S+LFGHE GAFTGA + GRFE AD +LFLDE+ P+ +Q KL Sbjct: 434 VKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKL 493 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV++ E ER+G ++ +Q +VRL+ ATN DL MV + FR DL RL +QLPPLR Sbjct: 494 LRVLQEQEFERLGSNKLIQTDVRLIAATNRDLKKMVADREFRNDLYYRLNVFPIQLPPLR 553 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI L+ + F ++ R + + TL + WPGN+REL+NVVER+V Sbjct: 554 ERPEDIPLLVKAFTFKIARRMGRNID-SIPAETLRTLSSMEWPGNVRELENVVERAVLLT 612 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + + + P+ + +E+ + E +L+ L++ Sbjct: 613 RGNVLQ---LSLPDITAVTPDTSPVATESDKEG-----------EDEYQLIIRVLKETNG 658 Query: 301 NQK---RAAELLGLTYHQFRALLKKHQI 325 AA+ LGL + +K+ I Sbjct: 659 VVAGPKGAAQRLGLKRTTLLSRMKRLGI 686 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 496 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 128/330 (38%), Positives = 187/330 (56%), Gaps = 9/330 (2%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 D ++G+ +VLE+V +A D VLI GE GTGKE+IA+ +H S R I + Sbjct: 139 NFDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEVIANAIHRNSPRCGQALIKV 198 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 +CAAL E LL++ELFGHE GAFTGA K+ GRFE A GTLFLDE+ MVQ KLLRV Sbjct: 199 SCAALPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTLFLDEIGEIAPMVQVKLLRV 258 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ ERVGG++ + +VRLVCAT +L V G FR DL RL V LPPLRER+ Sbjct: 259 LQEKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFREDLFYRLNVVQVALPPLRERK 318 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH-GT 242 DI+++AE+ + ++ + GF+ AR+ LL+Y +PGN+REL+N +ER+V Sbjct: 319 EDILVLAEHLLQRSTSRVQR-VMKGFSVAARDVLLHYSFPGNVRELENAIERAVALAQEG 377 Query: 243 SDYPLDDI---IIDPFKRRPPEDAIA----VSETTSLPTLPLDLREFQMQQEKELLQLSL 295 + D+ + PF P + + L E + + E+E + L Sbjct: 378 DEIQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSNVTNARQTGTLAEVRERCEREYILAVL 437 Query: 296 QQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 ++ +++ A++ LGL+ K++ + Sbjct: 438 EREGWSRTAASKSLGLSRKALWEKCKRYGL 467 >UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLV9_CHIPD Length = 515 Score = 496 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 169/315 (53%), Gaps = 18/315 (5%) Query: 14 SFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 + V++QV +AP D VL+ GE GTGKEL A +H S R Q F+ +NCAAL L+ Sbjct: 209 ALRPVIQQVRQVAPTDATVLLTGETGTGKELFAEAIHLSSMRRQKAFVKINCAALPPQLI 268 Query: 74 DSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVG 133 +SELFGHE GAFTGA R G+FE A+GGTLFLDE+ P+ +Q KLLRVI+ E+ER+G Sbjct: 269 ESELFGHEKGAFTGAIHRRIGKFEMAEGGTLFLDEIGELPLDMQAKLLRVIQEKEIERIG 328 Query: 134 GSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYF 193 G++ + VNVR++ ATN L V +G FR DL RL + LP LRER DI L+ ++F Sbjct: 329 GTETIPVNVRIIAATNRTLEEEVRQGRFRQDLYYRLYVFPIHLPALRERREDIPLLLQHF 388 Query: 194 AIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIID 253 A + P+ + L++Y WPGNIRE++++VER+V + Sbjct: 389 ARNAAMKYGKPI-RHIASGSVLALMDYTWPGNIREMEHMVERAVISSDEPQITIA----- 442 Query: 254 PFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK---RAAELLG 310 + L + E++ + +L+ + AA+LL Sbjct: 443 ---------VPGNRKALEADGNSLSPLLTLAETERQTIIRALRYSNGRIRGPQGAADLLD 493 Query: 311 LTYHQFRALLKKHQI 325 + A +KK I Sbjct: 494 IKPTTLEARMKKLGI 508 >UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRW0_ACIBL Length = 463 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 122/324 (37%), Positives = 186/324 (57%), Gaps = 6/324 (1%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 DN++G + + ++ + +A VLI GE GTGKEL+A +H S R PF S+NC Sbjct: 142 DNIVGTSPAMGKLKNTIRMVASTGSTVLIHGESGTGKELVARAVHTCSPRAGEPFTSINC 201 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A E LL+SELFG+ GAFTGA + G FE + GGT+FLDE++ + +Q KLLRV++ Sbjct: 202 GAFPETLLESELFGYVKGAFTGAVQNKRGLFEVSTGGTIFLDEISEMTLTMQVKLLRVLQ 261 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + VGG+ + V+VR++ ATN +L A V +G FR DL RL+ VQ+PPLRER D Sbjct: 262 ERCIRPVGGTSEIPVDVRVIAATNKNLDAQVADGVFREDLYYRLSVIPVQVPPLRERVDD 321 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A +F + + + L Y WPGN+R+L+N +ER+V + Sbjct: 322 IELLANHFLKKYAPAAGKSI-RAIRVESLGDLREYDWPGNVRQLENTIERAVALEMSDVL 380 Query: 246 PLDDIIIDPFKRRPPEDAI----AVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 ++ I + K +P A + + ++ +D+ + E+ LLQ +L+Q Sbjct: 381 HVE-IPTERQKNKPAAAAAVAGFSGNGQVAINADGIDMEAYVANIERSLLQQALKQANGV 439 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 Q +AA+LL L+Y FR L+KK+++ Sbjct: 440 QTKAADLLKLSYRSFRHLMKKYEL 463 >UniRef50_D0LQ47 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LQ47_HALO1 Length = 665 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 130/354 (36%), Positives = 181/354 (51%), Gaps = 37/354 (10%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 +G + + VL VS + P + VL+ GE G+GKE++A +H S R PFI++NCAA Sbjct: 311 FVGSSPAAETVLRFVSKVGPSEATVLLTGESGSGKEMVARAIHDASRRASAPFIAINCAA 370 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L E L++SELFGHE GAFTGA +R GRFE AD GTLFLDE+ P+ Q K LRV+E Sbjct: 371 LTETLIESELFGHERGAFTGASERKAGRFELADKGTLFLDEVGELPLSCQTKFLRVLEEQ 430 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ERVGG + + V+VR+V ATN DLP+MV +G FR DL RL+ +PPLR R SDI Sbjct: 431 VFERVGGGRTIAVDVRVVAATNRDLPSMVRQGRFREDLYYRLSVIHTVVPPLRARTSDIP 490 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 ++AE+F + +++ + GF+ A L + WPGN+REL+N VER+V Sbjct: 491 VLAEHFLARFRKQVARRVA-GFSPEALAALTRHPWPGNVRELRNAVERAVVLGEGPWILP 549 Query: 248 DDIIIDPFKRRP---------PEDAIAVSETTSLPTLPLDLREF---------------- 282 + D A+ V + P + E Sbjct: 550 AHLPPDVLAAGAAPPPPAGLVSAPALPVDPAAAGPGASIGGGELGANAAPGWGEGVSEGG 609 Query: 283 -----------QMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + E+E + +LQ N+ +AA LL + LK + I Sbjct: 610 PGAAGAAGARPLRELEREGIIAALQATGGNKVQAAALLQIDRSTLYKKLKDYDI 663 >UniRef50_Q086E2 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q086E2_SHEFN Length = 516 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 121/325 (37%), Positives = 181/325 (55%), Gaps = 19/325 (5%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 D ++G + +V ++V +AP+ VL++GE GTGK ++A +H SSR + P I++ Sbjct: 205 NFDEIIGSSKLLSQVFQKVEQVAPMHATVLLLGETGTGKGVVARAIHSRSSRKKRPLITV 264 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 +C L L++SELFG E GAFTG+ + GRFE ADGGTLFLDE+ P+ +Q KLLRV Sbjct: 265 DCTTLPVALIESELFGRERGAFTGSDSKQIGRFELADGGTLFLDEIGEMPLEMQAKLLRV 324 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 I+ GE ER+G + ++V+VR++ ATN +L V G FR DL RL + LPPLR+R+ Sbjct: 325 IQDGEFERLGSPRTIKVDVRIIAATNRNLIEEVRNGKFREDLYYRLNVFPITLPPLRQRK 384 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+ +F I+ ++I + T+ A TL ++WPGN+REL++ +ER+V Sbjct: 385 EDISLLVNHFLIKFNKKIGKQID-IITQDALNTLQQHQWPGNVRELESAIERAVILSEGK 443 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ- 302 + D K E+ + ++ E E + LQQ + Sbjct: 444 SLQILDRFESFDKLATIEEPSM---------------KALVELEYEHIVKVLQQTGWRIE 488 Query: 303 --KRAAELLGLTYHQFRALLKKHQI 325 K AA +LGL RA ++K I Sbjct: 489 GNKGAALILGLNPSTLRARMRKQGI 513 >UniRef50_C7LP58 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrionales RepID=C7LP58_DESBD Length = 469 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 121/332 (36%), Positives = 188/332 (56%), Gaps = 11/332 (3%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A + +++G S VL +AP VLI GE GTGKE+ A +H S R PF+ Sbjct: 131 APREVSIVGTHPSVTRVLALARQVAPSKATVLISGESGTGKEMFARFIHAHSGRENAPFV 190 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 ++NCAAL E+LL+SELFGHE G+FTGA R G+FE A GGTL LDE++ + +Q KLL Sbjct: 191 AVNCAALPEHLLESELFGHEKGSFTGAISRKLGKFELASGGTLLLDEISEMALALQAKLL 250 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R ++ GE++RVGG + ++V+VR++ TN +L V +G FR DL RL ++LP L + Sbjct: 251 RALQEGEIDRVGGVETVKVDVRVLATTNRNLEQSVEKGEFRQDLFYRLNVIPLRLPSLAQ 310 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R D++L+A++F ++ RE L + AR+ L+ + WPGN+REL+N++ER+V G Sbjct: 311 RGDDVLLLADFFIRRLTREYGLGSLQ-LSTEARDWLMAHDWPGNVRELQNLMERAVLLAG 369 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLR----------EFQMQQEKELL 291 ++D + P + + + ++P + E L+ Sbjct: 370 AGPIRSMHFLLDGQEWSPEINEEGEAAAPGVLSMPSATSAVTIDADGRIPTIQEMEMHLI 429 Query: 292 QLSLQQGKYNQKRAAELLGLTYHQFRALLKKH 323 SL + N+ +A+ELLG++ R L ++ Sbjct: 430 IKSLDKTAGNRTKASELLGISVRTLRNKLGEY 461 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 117/325 (36%), Positives = 186/325 (57%), Gaps = 19/325 (5%) Query: 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF 60 + +D ++ E+ +LE V +A D VL+ GE G GKE+IA +H S R PF Sbjct: 116 LIPEQDEIVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIHKHSPRSNQPF 175 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 +++NCAA+ E LL++ELFGHE GAFTGA +R PG+FE A+ GT+ LDE++ +Q KL Sbjct: 176 VAINCAAITETLLEAELFGHEKGAFTGATERKPGKFELANKGTILLDEISEMAYRLQAKL 235 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRVI+ E++RVGG++P+ ++VR++ TN DL V +G FR DL R+ +++PPLR Sbjct: 236 LRVIQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRINVFPIRIPPLR 295 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI+ +AE+F ++ ++ TE ++ LL W GN+REL+N + RS Sbjct: 296 ERSDDIIPLAEFFLKRLSNKMSKNFT--ITEDMKKFLLKKSWQGNVRELENFIYRSAVLS 353 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 L + I+ F+ P A E+EL+ +L++ + Sbjct: 354 QDGILRLHEDEINLFEEEKPVKAGK-----------------LKDAERELIVDALKKTEG 396 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 N+ +AA++LG++ R + ++ + Sbjct: 397 NRTKAAKILGISVRTLRNKINEYGL 421 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 119/322 (36%), Positives = 172/322 (53%), Gaps = 8/322 (2%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +N++G++ L + + V+ +AP VL+ GE GTGKELIA +H S+R F+ + Sbjct: 156 NFENIIGKSEPMLRIFDLVTQIAPSRSTVLLQGESGTGKELIAKAIHMNSTRKDRAFVPI 215 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 N ++ +LL+S LFGH GAFT A G FE ADGGTLFLDE+ T M Q K+LRV Sbjct: 216 NTGSMPTDLLESTLFGHVKGAFTSAIASKKGLFEVADGGTLFLDEIGTMSMETQAKILRV 275 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ + +GG Q +QV+VR++ ATN DL +V EG FR DL RL + LPPLR+R Sbjct: 276 LQDRKFMHLGGVQEIQVDVRIIAATNVDLRQLVKEGKFREDLFYRLNVITIDLPPLRQRR 335 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 D+ L+ E+F + C E PL T A LL+Y W GN+REL+NV+ER+V Sbjct: 336 LDVPLLCEHFIKKFCEENAKPLMR-MTPEALRPLLDYNWQGNVRELENVIERAVVLANGP 394 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 +D + + R + L E E+ ++ L++ +NQ Sbjct: 395 SITIDLLPDNVVGRGSSLSFVETRPDA-------SLFEIMEDCERRIIVDMLEKVGWNQT 447 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AAE + +K+ I Sbjct: 448 EAAEKFRIPLSTLNQKIKRLSI 469 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 110/326 (33%), Positives = 182/326 (55%), Gaps = 6/326 (1%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 + ++G + ++ + +S +AP VLI GE GTGKEL+A +H LS F+ + Sbjct: 138 FEGIIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGKELVARAIHRLSPASGHEFVPIV 197 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 C+A+ E+L +SE+FGH GAFTGA G FE+A+ GT FLDE+ ++Q KLLRV+ Sbjct: 198 CSAIPESLFESEVFGHTKGAFTGAASSRAGLFEQANQGTAFLDEIGELTPIIQTKLLRVL 257 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + E++RVG ++ ++ +R++ ATN DL V G FR DL RLA +++PPLRER+ Sbjct: 258 QEREIKRVGATESTRIQIRVISATNKDLEEEVMAGRFREDLFYRLAVVPIRVPPLRERKG 317 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D+ L+ ++F + R + + A E LL+Y +PGN+REL+N++ER V + Sbjct: 318 DVPLLVDHFLAKYARLFNKDIHR-ISSYAMEVLLDYDFPGNVRELENIIERGVAMENSQI 376 Query: 245 YPLDDIIIDPFKRRPPEDAIAVS-----ETTSLPTLPLDLREFQMQQEKELLQLSLQQGK 299 + + + +R + + + + L E+E++ +L++ Sbjct: 377 ILPESLTLSGHRRSREPEPAGGTVDDKRQEIAEEVFSRGLEPTLADLEREMIVNALEKAG 436 Query: 300 YNQKRAAELLGLTYHQFRALLKKHQI 325 ++ RAAELL ++ R +KK+ I Sbjct: 437 NSKTRAAELLRTSFRSLRYKIKKYGI 462 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 126/313 (40%), Positives = 184/313 (58%), Gaps = 12/313 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 NL+G++ SF VL+ V +A D VL+ GE GTGKELIA +H+ S R +GPF+++NCA Sbjct: 192 NLVGQSPSFQAVLKTVMKVASTDATVLLFGESGTGKELIAKTIHFQSKRAKGPFVAINCA 251 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ ENLL++ELFG E GAFTGA K G+FE+A+GGT+FLDE+A P+ +Q KLLRV++ Sbjct: 252 AIPENLLEAELFGSEKGAFTGAVK-RIGKFEQANGGTIFLDEIAELPLSLQPKLLRVLQE 310 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 +E +G S+ ++V+VRL+ ATN DL + +G FR DL RL + +PPLRER+ DI Sbjct: 311 RTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFREDLFWRLNVIPIYIPPLRERKEDI 370 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 L+ EY+ C + + E A + L++Y WPGN+REL N +ER V +S Sbjct: 371 PLLVEYYLKSFCNIYRKSV--SIDEEALKVLVSYDWPGNVRELANTIERLVVMTESSKIK 428 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 + D+ + L L + E+ + +L + +N ++ A Sbjct: 429 VYDLPDTVRGVFKLKPYS---------LGDLKLPTEVEELERIRIMDTLPKFNFNIRKTA 479 Query: 307 ELLGLTYHQFRAL 319 + LGLT Q Sbjct: 480 QALGLTERQLNYR 492 >UniRef50_Q3A103 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A103_PELCD Length = 467 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 130/318 (40%), Positives = 188/318 (59%), Gaps = 8/318 (2%) Query: 8 LLGEANSFLEVLEQVSHLAPLDK-PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++ + +VLE V +A D V I GE GTGKEL+A +HY S+R PF+++NCA Sbjct: 155 IVACSREMGQVLEMVDKIASSDAATVFIQGESGTGKELVARAIHYQSARASQPFMAINCA 214 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ + LL+SEL GHE GAFT A+ G FE ADGGT+FLDE+ +Q KLLRV+E Sbjct: 215 AVPQTLLESELMGHEKGAFTDAKNVKKGLFELADGGTVFLDEIGDMDPAMQAKLLRVLEE 274 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 RVGG++ ++V+VR+V ATN DL + + +FR DL R+ VQ+PPLRER DI Sbjct: 275 RTFRRVGGTRDIKVDVRIVSATNRDLHKAMEDKSFRPDLYYRIGVIPVQIPPLRERRDDI 334 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 + +AE+F Q RE + G + A++ LL Y WPGNIREL+NV+ERSV Sbjct: 335 LPLAEFFIRQFNREFNKKV-RGISRMAQKILLEYSWPGNIRELRNVIERSVILECEEQLL 393 Query: 247 LDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAA 306 ++++ + + ++ + LP +D E+EL++ +L+ + NQ +AA Sbjct: 394 VENLPRELVAQSVGDNIGPL--NFQLPPEGVD----IEDIERELIRQALEMAQGNQTQAA 447 Query: 307 ELLGLTYHQFRALLKKHQ 324 +LL L FR +KK Sbjct: 448 KLLRLGIDAFRYRMKKFG 465 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 495 bits (1277), Expect = e-139, Method: Composition-based stats. Identities = 119/320 (37%), Positives = 176/320 (55%), Gaps = 10/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D L+GE+ ++ E ++ +AP VLI GE GTGKEL A +H S R + PF+++NC Sbjct: 143 DELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGKELAAKLIHKWSGRHKQPFLAINC 202 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AL E LL+SELFGH GAFTGA + PG FE D GTLFLDE+ + + Q KLLRV++ Sbjct: 203 GALPETLLESELFGHVKGAFTGADQDKPGLFETVDQGTLFLDEIDSMTLNFQVKLLRVLQ 262 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 G +VGG QP + +VR++ A++ L V G+FR DL RL ++LPPLR+R D Sbjct: 263 EGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGSFRRDLFYRLNVVSLELPPLRQRRED 322 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+A +F + + + LL++ WPGN+REL+N VER++ + Sbjct: 323 IPLLAHHFLAKYNAKYDKQVQT-IPAPVITRLLDHSWPGNVRELENAVERALLFCPGQEL 381 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 + + E + SL EK+L+ +LQ+ ++ + Sbjct: 382 QAEHLPPLETGGEEAELHTTADDAKSL---------TMASMEKKLIIKALQRANGHRGKT 432 Query: 306 AELLGLTYHQFRALLKKHQI 325 AELLG++ +KK++I Sbjct: 433 AELLGISPASLWRKIKKYEI 452 >UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIC3_9BACT Length = 540 Score = 495 bits (1277), Expect = e-139, Method: Composition-based stats. Identities = 119/335 (35%), Positives = 182/335 (54%), Gaps = 15/335 (4%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 + L+G +VL++V + D VLI GE GTGKE++A +HY S+R + PF+++ Sbjct: 203 QYEGLVGSGRLMRKVLDKVQMVTASDSAVLIRGESGTGKEVVAKTIHYNSNRRKKPFVAV 262 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAA+ L++SELFG+ GAFTGA G+FE+ADGGT+FLDE+ PM Q KLLRV Sbjct: 263 NCAAIPGELIESELFGYSKGAFTGAAGEKKGKFEQADGGTIFLDEIGDMPMEAQSKLLRV 322 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ +E++GG++P+QV+VR++ ATN +L A V G FR DL RL + LPPLR+R+ Sbjct: 323 LQDKVVEKLGGTKPVQVDVRILAATNKNLEAAVQSGEFRLDLYYRLNVFAIFLPPLRKRK 382 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI +A++ + + + A L+N +PGNIREL+N +ERS + G Sbjct: 383 EDIPEIAQHILKNLSKRYNKNYT--ISPEAVTALMNCNYPGNIRELENCLERSAFTAGGG 440 Query: 244 DYPLDDIIIDPFK-------RRPPEDAIAVSETTSLPTLPLDLREFQMQQ------EKEL 290 + I + + + D E + E+E Sbjct: 441 EIKTKHISCMRGEMCMSHFMEEQLSGSSTAITPQTGGIPDNDYSEADNELISGNMDERER 500 Query: 291 LQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + +L++ + Q +AA +L +T Q +KK I Sbjct: 501 VVQALEKAGWVQAKAARMLDMTVRQMNYRIKKFNI 535 >UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESD9_9FIRM Length = 474 Score = 495 bits (1277), Expect = e-139, Method: Composition-based stats. Identities = 111/318 (34%), Positives = 172/318 (54%), Gaps = 13/318 (4%) Query: 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 + + + L + +A + +LI GE G GKE++A +H S+R + P I +NCA++ Sbjct: 168 ISQNKDLQKTLSLAAKVANTNCTILIQGESGVGKEVMAKCIHNASNRKERPMIKVNCASI 227 Query: 69 NENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 ENLL+SELFG+E GAFTGA+K G+FE A+ GT+ LDE+ + +Q KLLRV++ Sbjct: 228 PENLLESELFGYEEGAFTGARKGGKLGKFELANKGTILLDEIGDMSLTMQSKLLRVLQEK 287 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 ELERVGG++ ++++VR++ ATN +L MV + FR+DL RL + +P LR R DIM Sbjct: 288 ELERVGGTKTIKLDVRVIAATNQNLEEMVEKNEFRSDLYYRLHVVPIHIPALRCRREDIM 347 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + YF + T A L Y WPGN+REL+NV+E ++ + Sbjct: 348 PLVRYFIER----NGGDEGTDLTPGAARMLEEYGWPGNVRELQNVIEYAMIVKTGDILEI 403 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 D +E P L++ Q EK +++ +L++ N+ A Sbjct: 404 KDFPQYLRG--------DGAEDGPAEDGPCRLKDAVEQLEKSMIKRALKRNNGNKSMAIN 455 Query: 308 LLGLTYHQFRALLKKHQI 325 LGL+ F L+K+ + Sbjct: 456 ELGLSRRSFYEKLEKYGL 473 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 495 bits (1277), Expect = e-139, Method: Composition-based stats. Identities = 128/322 (39%), Positives = 184/322 (57%), Gaps = 3/322 (0%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++LGE+ + +L QV+ LAP+D VLI GE GTGKELIA LH S R F+++NC Sbjct: 144 HILGESPALHALLRQVARLAPVDTTVLISGESGTGKELIARELHVRSPRAPMSFVAVNCG 203 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 A+ L++SELFGH GAFT A+ G F ADGGTLFLDE+ P+ Q KLLRV++ Sbjct: 204 AIPSGLIESELFGHAKGAFTDARTAKRGLFAEADGGTLFLDEVGELPLAAQVKLLRVLQE 263 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE+ VG ++ +VNVR+V AT DL +V +G FR DL RL +++PPLRER D+ Sbjct: 264 GEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGDFREDLYYRLNVVNLRVPPLRERREDV 323 Query: 187 MLMAEYFAIQMCREIKL-PLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 L+A F + RE+ P G T A L +Y WPGN+REL+N +ER+V Sbjct: 324 PLLARAFIARFNRELNREPPVAGLTAEAEALLKSYAWPGNVRELENAMERAVLLADEPHI 383 Query: 246 PLDDIIIDPFKRRPPED--AIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 ++ + PP + L L+ + E+ ++ +L++ K N+ Sbjct: 384 LPANLPERLWAASPPGPHGEKPHGDPVLQGGGDLSLKRAIRELEESYIRAALRKTKGNRT 443 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 RAAELL +++ +K++ I Sbjct: 444 RAAELLDISHRALLYKIKEYGI 465 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 495 bits (1277), Expect = e-139, Method: Composition-based stats. Identities = 117/317 (36%), Positives = 165/317 (52%), Gaps = 12/317 (3%) Query: 10 GEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 G E++ A VL+ GE GTGKEL A +H S R F +NCAA+ Sbjct: 269 GHHKRLTELINVARKAALTSAVVLLRGESGTGKELFAKAIHEASPRIDKKFCVINCAAIP 328 Query: 70 ENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 +L +SE+FG+E+GAFTGA K G FE ADGGTLFLDE++ P+ +Q KLLRV++ G Sbjct: 329 PSLFESEMFGYESGAFTGADKKGKIGVFEMADGGTLFLDEISELPLDMQVKLLRVLQDGV 388 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 R+GGS P++V+VR++ ATN L M+ GTFR DL RL +++PPLRER DI Sbjct: 389 FFRIGGSTPIKVDVRIIAATNRSLEDMMAHGTFREDLYYRLNVVSLEIPPLRERREDIPE 448 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLD 248 + F + + + T L Y WPGNIR+LKN++ER V Sbjct: 449 LVYLFLQEFSQLYNKQISK-LEPGVMATFLAYSWPGNIRQLKNIIERMVILTEGDTVLES 507 Query: 249 DIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAEL 308 I +++ +S T + L Q E+EL+ +L+Q N+ AA + Sbjct: 508 AIP----------ESLKLSSRQDQATATIGLASVTEQTERELIIRTLKQVNGNRSEAARM 557 Query: 309 LGLTYHQFRALLKKHQI 325 LG+ + + I Sbjct: 558 LGIPRSTLYYKMHQLGI 574 >UniRef50_C7LPL8 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=2 Tax=Deltaproteobacteria RepID=C7LPL8_DESBD Length = 575 Score = 495 bits (1276), Expect = e-139, Method: Composition-based stats. Identities = 111/325 (34%), Positives = 179/325 (55%), Gaps = 19/325 (5%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 ++G++++ V +++ +A + VL+ GE G GK ++A +H S+R +++ Sbjct: 262 NFGEIIGQSSAIAHVFDKIEQIASQNTTVLLQGETGCGKGVVARAIHARSARKDRAMVTI 321 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NC AL NL++SELFG E GAFTGA R GRFE ADGGT+FLDE+ PM +Q KLLRV Sbjct: 322 NCTALPANLIESELFGREKGAFTGASARQMGRFELADGGTIFLDEIGEMPMELQCKLLRV 381 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 I+ GE ER+G + ++V+VR++ A+N L + G+FR DL RL + +PPLR R+ Sbjct: 382 IQDGEFERLGSPRTIKVDVRIIAASNRKLEEEIKNGSFREDLYYRLNVFPITIPPLRARK 441 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI L+ +F + ++I + + A E L NY WPGN+REL++V+ER++ Sbjct: 442 DDIRLLVNFFVAKFNKKIGKKI-ETIPKEALEALENYDWPGNVRELESVIERAIIISKGP 500 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN-- 301 + +D F P + ++ + + E++ + LQ+ + Sbjct: 501 SLQI----LDQFNTSPKPSETSGADV-----------KALVDLERDHIIHVLQKTNWRVE 545 Query: 302 -QKRAAELLGLTYHQFRALLKKHQI 325 + AA +L + RA ++K I Sbjct: 546 GKNGAAAILDINPSTLRARMRKFGI 570 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 495 bits (1276), Expect = e-139, Method: Composition-based stats. Identities = 115/324 (35%), Positives = 173/324 (53%), Gaps = 9/324 (2%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A + +L + V + + +A D +LI GE GTGKEL+A +H S R +G F+ Sbjct: 137 ARGYEQILSGSPVMRSVFDLLDRIADSDTSILITGESGTGKELVARAVHQRSRRSEGAFV 196 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 ++NCAA+ + LL+SELFGH GAFT A+ G F RA GGTLFLDE+ P+ +Q KLL Sbjct: 197 AVNCAAVPDALLESELFGHARGAFTDAKGARSGLFARAHGGTLFLDEIGELPIGLQPKLL 256 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R ++ + VG + L V+VRL+ ATN DL + E FR DL R+ V LPPLR Sbjct: 257 RALQERVVRPVGADEELPVDVRLIAATNRDLETAIEERRFREDLYYRINVVHVDLPPLRS 316 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R +D++L+A++F P+ G + A E L+ Y WPGN+REL+N +ER+V Sbjct: 317 RGADVLLLAQHFLEHFATVKARPI-QGLSAPAAEKLMAYAWPGNVRELQNCIERAVALAR 375 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 +DD+ R ++ + T L + E+ + L+ N Sbjct: 376 YDHITVDDLPEKIRTYRRSHVLVSSDDPTELVP--------MEEVERRYILRVLEVVGGN 427 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 + +AA++LG L+++ + Sbjct: 428 KSQAAQILGFDRATLYRKLERYGM 451 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 123/346 (35%), Positives = 187/346 (54%), Gaps = 26/346 (7%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + ++G FL +LE+ +A VL++GE GTGKE+ A +H++S R GPF++ Sbjct: 143 SDQRTVIGRDAHFLRLLERARAVASSKATVLVLGESGTGKEVFARFIHHVSDRKAGPFVA 202 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 LNCAAL E LL+SELFGHE GAFTGA G+FE+A GGTL LDE+ P+ +Q KLLR Sbjct: 203 LNCAALPEGLLESELFGHEKGAFTGAVMSKKGKFEQAHGGTLLLDEIGEVPLHLQAKLLR 262 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ E++R+GG +P++V+V ++ TN DL A V EG FR DL RL ++LP +RER Sbjct: 263 VLQEEEVDRLGGKEPVKVDVHVLATTNRDLGAAVREGNFREDLFYRLNVIPIRLPAMRER 322 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI L+A++F + + P + +R+ L Y+WPGN+REL+N+VER+V Sbjct: 323 PEDISLLADHFIEKYTARYQKP-AKKLSAASRQRFLEYQWPGNVRELENLVERAVLLSAG 381 Query: 243 SDYPLDD-----IIIDPFKRRPPEDAIAVSETTSLPTLP--------------------L 277 + D + + +A S Sbjct: 382 PELEPWDFWEDELPPAGAVTGATDPELAGSANPEPVAAADLALAGSNTDAAASAAEIAID 441 Query: 278 DLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKH 323 R E++++ +L+Q N+ AA++LG++ R L ++ Sbjct: 442 PSRHSLWDVERQMILRALRQTSDNRTHAAKMLGISVRTLRNKLNEY 487 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 121/323 (37%), Positives = 192/323 (59%), Gaps = 7/323 (2%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+++G + + + EQV +A + VLI GE GTGKE++A +H LS R +GPF+++NC Sbjct: 141 DDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQSIHRLSHRNKGPFVAINC 200 Query: 66 AALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 AA+ E LL+SELFG+E GAFTGA+K PGRFE A GGTLFLDE+ P+ +Q KLLRV+ Sbjct: 201 AAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFLDEIGDMPLYLQAKLLRVL 260 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + +ERVGG++ ++V+VR++ AT+ DL +M+ FR DL RL + +PPLRER+ Sbjct: 261 QERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLYFRLNVIPLYVPPLRERKE 320 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 D+ + +Y+ + C+ + F+ +A + + +Y WPGNIREL+N+VE V Sbjct: 321 DLYELIQYYMYKFCKRLGKE-PKRFSSQALKKIFDYHWPGNIRELENMVEYIVNLEIGDL 379 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREF--QMQQEKELLQLSLQQGKYN- 301 + + + + E T+ + + E++L+ +LQ+ + Sbjct: 380 VTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYKINEVEEQLIIQALQRFGTST 439 Query: 302 --QKRAAELLGLTYHQFRALLKK 322 +++AAE LG++ L+K Sbjct: 440 EGKRKAAEALGISLATLYRKLEK 462 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 112/323 (34%), Positives = 180/323 (55%), Gaps = 16/323 (4%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 D ++G++++ + + VLI GE GTGKELIA +H SSR PF+++N Sbjct: 338 FDEMIGDSDAMKKTRHMAERASRSLSTVLIQGESGTGKELIAQGIHNASSRHGQPFVAVN 397 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 CAA+ E LL+SELFG+E G+FTGA+K PG+ E A+GGTLFLDE+ P+ +Q KLLR+ Sbjct: 398 CAAITETLLESELFGYEEGSFTGAKKGGQPGKVEMANGGTLFLDEIGDMPLQMQVKLLRM 457 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ + RVG S+ + ++VR++ AT+ +L V EG FR DL RL + +PPLRER Sbjct: 458 LQERRICRVGSSEEISIDVRIIAATHQNLKQAVQEGCFRKDLYYRLNVLPITIPPLRERM 517 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH-GT 242 D+ +A++ ++ + +Y WPGNIREL+NV+ER++ Sbjct: 518 DDLPALAKFLVTKLSGRFGKEPV-AISSLFMRACQSYDWPGNIRELENVIERAMNMVDDG 576 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + I +DP + + ++P L+ + E E++ +L+ + N Sbjct: 577 DALTAEMIDLDP---------VELPADHAIPDGVRPLK----EVEMEMVVRALEMSRGNI 623 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 A+ LLG++ + +K++ I Sbjct: 624 VHASSLLGISRNTIYRKIKEYDI 646 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 123/317 (38%), Positives = 176/317 (55%), Gaps = 5/317 (1%) Query: 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 LG + + + E ++ +AP VL+ GE GTGKE +A +H S R PF+ +NC AL Sbjct: 157 LGTSAAMQRIAELIAKIAPTRTTVLLTGESGTGKERVARAIHDQSDRAARPFLVVNCGAL 216 Query: 69 NENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE 128 E L++SELFGHE G+FTGA R G F ADGGTL LDE+ P +Q KLLRV++ + Sbjct: 217 PEALMESELFGHEKGSFTGAGARSMGLFREADGGTLLLDEIGELPAALQVKLLRVLQERK 276 Query: 129 LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIML 188 + VG + + V+VR++ ATN D+ A V +G FR DL RL ++LPPLRER DI Sbjct: 277 VRPVGAAAEIAVDVRVLAATNRDVEAEVRQGRFRQDLYYRLNVIRIELPPLRERPGDISR 336 Query: 189 MAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLD 248 +AE F + E+ + G T A L Y +PGN+REL+N++ER+V G L Sbjct: 337 LAERFLRRFAAELGKDV-RGLTTDAVRALDAYSFPGNVRELENMMERAVALAGGPTIGLG 395 Query: 249 DIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAEL 308 D+ + LP L E + E+ L+ +L++ +K AA+L Sbjct: 396 DLPSAVAGLSASPAPL----LAQLPPEGCALDEVIGEVERRLILQALERTGGVRKAAAKL 451 Query: 309 LGLTYHQFRALLKKHQI 325 LG+++ R L KH + Sbjct: 452 LGVSFRSLRYRLAKHAL 468 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 183/323 (56%), Gaps = 4/323 (1%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR-WQGPFISL 63 N+L + +++ E + H+A VLI GE GTGKE IA +H S+ G F+++ Sbjct: 146 FQNVLSRSPKMVDLFELIGHVAGTASTVLIRGETGTGKEQIARAIHQASANYRTGEFVAV 205 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NC ALNENLL+SELFGHE G++TGA ++ GRFE A GTLFLDE+ PM +Q KLLRV Sbjct: 206 NCGALNENLLESELFGHEKGSYTGADRKRIGRFELAHKGTLFLDEIGDVPMSMQVKLLRV 265 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ ERVGG++P++++VR+V AT+ D+ +V +G FR DL RL + +PPLRER Sbjct: 266 LQERRFERVGGAEPIEIDVRVVAATHQDMEKLVKDGKFREDLYYRLNVVRIDIPPLRERT 325 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI ++ +F + R + P P + A + L WPGN+R+L+N +ER+ Sbjct: 326 EDIPVLVSHFCQKFVRVGQKP--PTISPEALDLLTKCPWPGNVRQLENAIERACVTARDG 383 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPT-LPLDLREFQMQQEKELLQLSLQQGKYNQ 302 D+ + +R A L LP L E E+ ++ +L++ + + Sbjct: 384 VIRTKDLPPEVGRRPESSAAGKHPFHVDLNRKLPDQLSELTAAFEERYIRRALKRSRGHV 443 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 + A++ GL+ + +++I Sbjct: 444 GKCAKITGLSRRSITDKIAQYKI 466 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 124/334 (37%), Positives = 193/334 (57%), Gaps = 13/334 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKP-VLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 +++G + E++ V+ +A + +L+ GE GTGK+L+A +HY S R + PF++ Sbjct: 140 GYHDIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGKDLVAKAIHYQSRRQEKPFVA 199 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 +NC+A+ E L+++ELFGHE GAFT A+ G FE ADGGTLFLDE+ ++Q KLLR Sbjct: 200 INCSAIPETLMEAELFGHEKGAFTDAKAMKKGLFEAADGGTLFLDEIGELSPLLQAKLLR 259 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V+E + RVGG + +QV+VR++ A+N DL MV +GTFR DL RLA V LPPLR+R Sbjct: 260 VLEDQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDGTFRQDLYYRLAIISVFLPPLRDR 319 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + DI+ + E+F + R+ K + G T+ R L+ + WPGN+RELKN +ER++ Sbjct: 320 KEDILPLVEFFIERYNRKFKKSI-RGVTDNTRRLLMKHDWPGNVRELKNAIERAMILDEA 378 Query: 243 SDYPLDDIIIDPFKR----------RPPEDAIAVSETTSLPTLPLD-LREFQMQQEKELL 291 + D + ++ PP + SLP L + + E+ + Sbjct: 379 ENLRPDYLPFAVAQQQAMYTAFESASPPAPIQQLPNGRSLPRLVIPEGGTSLEEVERAFV 438 Query: 292 QLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 ++++++ NQ AA LL ++ R LKK + Sbjct: 439 EMAMKEANGNQTHAARLLDISRDALRYKLKKFGL 472 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 494 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 117/320 (36%), Positives = 176/320 (55%), Gaps = 11/320 (3%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 ++G + +VL V L PVLI GE GTGKEL+A +H+ + PF++++C Sbjct: 145 HGIVGSSAKIQDVLRMVGRLKDTRTPVLICGESGTGKELVARAMHFRGGFAKRPFVAVDC 204 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 +L L++SELFGHE GAFTGA K G F+ A+GGT+FLDE+ P+ +Q KLLRV++ Sbjct: 205 GSLVPTLIESELFGHEKGAFTGAIKPKEGLFQAANGGTIFLDEIGELPLDLQAKLLRVLQ 264 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 ++ VG +Q ++V+VR++ ATN DL A GTFR DL RL V LP LRER+SD Sbjct: 265 DKQVRPVGSNQSVKVDVRVIAATNRDLEAGYKTGTFRKDLYFRLNVVTVYLPSLRERKSD 324 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + ++F + T +A ++L+ Y WPGN+REL+N +ER+V Sbjct: 325 IPSLIQHFIDRPSA--GREGVE-VTSQAMKSLMQYDWPGNVRELENCIERAVALGNGEVI 381 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 +DD+ P ++A AVSE E+ +Q Q ++ A Sbjct: 382 DVDDLPPSLQAMAPKKNAPAVSEGYDSTD--------LEDIERTTIQRVFDQVGGDKGLA 433 Query: 306 AELLGLTYHQFRALLKKHQI 325 ++LG++ +K++ I Sbjct: 434 LKMLGISRATLYRKIKRYNI 453 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 494 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 126/328 (38%), Positives = 175/328 (53%), Gaps = 10/328 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +G + + +V ++ A VL+ GE GTGKEL A +H S R GPF+ L+CA Sbjct: 139 GFIGRSRAMADVQAVLAKAAAGTATVLLRGESGTGKELAAKAVHDASPRRDGPFVKLHCA 198 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 AL + LL+SELFG+E GAFTGA R PGR E A GGTLFLDE+ VQ KLLRVI+ Sbjct: 199 ALPDTLLESELFGYEKGAFTGAATRKPGRVELAHGGTLFLDEVGDISPAVQVKLLRVIQE 258 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 ELER+GG+Q ++V+VR V AT+ L V EG FR DL RL V +P LRER DI Sbjct: 259 RELERLGGTQTVKVDVRFVAATHQPLEERVKEGRFREDLFYRLNVVPVWIPALRERPDDI 318 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYP 246 +A +F + P F T+ L WPGN+R+L+N +ER V T Sbjct: 319 EPLALHFLEVHAKTNGRPPFTLMTDG-LAALRAQPWPGNVRQLQNFLERLVVLSDTQVIG 377 Query: 247 ----LDDIIIDPFKRRPPEDAIAVSETTSLPTLPL-----DLREFQMQQEKELLQLSLQQ 297 L ++ P P A PT+P+ L + + E++ + +L++ Sbjct: 378 GREVLQELARQPGLAPAPFAATPSVSALEAPTVPVTDSARTLESQRKEMERQAMADALKR 437 Query: 298 GKYNQKRAAELLGLTYHQFRALLKKHQI 325 N+ AA LLG++ L+++ + Sbjct: 438 AGDNRTLAARLLGISRRTLYNKLEEYGL 465 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 494 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 119/324 (36%), Positives = 177/324 (54%), Gaps = 10/324 (3%) Query: 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 + N+ G + ++ + +A D +LI GE G GKEL A +H S R + FI Sbjct: 144 DPFSNIKGNNLAIQHIIHDMKKVAKTDATILITGESGVGKELFAQAIHEASLRSKKAFIP 203 Query: 63 LNCAALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NC A+ L +SELFG+E+GA+TGA K PG+ E ADGGTLFLDE+ P+ +Q KLL Sbjct: 204 INCGAIPNALFESELFGYESGAYTGAAKGGKPGKIELADGGTLFLDEVGELPLDMQVKLL 263 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R ++ E+ R+GG P +++VR++ ATN L MV GTFR+DL RL +PPLRE Sbjct: 264 RALQEKEIYRIGGQTPKKIDVRIIAATNRILEDMVLNGTFRSDLFYRLNVFTACIPPLRE 323 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R DI +A +F + + P P + A + L Y WPGNIREL+N +ER + H Sbjct: 324 RTDDISYLAHHFFKEFSFKYNKP-TPFVHQEATKRLHAYSWPGNIRELRNFIERLIVLHE 382 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 S+ DI+ + + + ++ L L + + EK + +LQQ N Sbjct: 383 GSEIYESDILKLLPQAKSFSEPVSQ--------TTLSLTDERESLEKTRILQTLQQTYGN 434 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 + A+ LG++ +KK++I Sbjct: 435 KSITAKKLGMSRANLYKKIKKYRI 458 >UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis Family n=6 Tax=Bacteria RepID=B5EIR5_GEOBB Length = 664 Score = 494 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 112/323 (34%), Positives = 170/323 (52%), Gaps = 24/323 (7%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 + ++G++ + VL+Q+ +AP D VLI+GE GTGKELIA +H R I +NC Sbjct: 345 EEIIGKSEAIRNVLQQIQQVAPTDSTVLILGETGTGKELIARAIHNAGQRKARAMIKVNC 404 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AAL L+++ELFGHE GA+TGA GRFE A+G T+FLDE+ P+ +Q KLLRVI+ Sbjct: 405 AALPAALIEAELFGHEKGAYTGAVSSQIGRFEAANGSTIFLDEIGELPLELQSKLLRVIQ 464 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 G+ ER+G S+P++ +VR++ ATN L V EG FR DL RL + +PPLR+R+ D Sbjct: 465 EGQFERLGNSKPVKADVRVIAATNVSLKQAVKEGKFREDLYYRLNVFPIFVPPLRDRQED 524 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ + + + + E + Y WPGNIREL+N+VER++ Sbjct: 525 IPLLVWAMVEEFSKVFGKTI-ERIPRKNMEIMERYLWPGNIRELRNLVERAMILSNGGTL 583 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN---Q 302 +D + P E++ + L++ + + Sbjct: 584 VVDILDGSAAAANEP--------------------MTMEAAERKHIGFILEKTGWRIRGK 623 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AAE+L + + +KK + Sbjct: 624 GGAAEILDMKPTTLHSRIKKLGV 646 >UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Proteobacteria RepID=A0LIA2_SYNFM Length = 1139 Score = 494 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 172/323 (53%), Gaps = 23/323 (7%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D+++ + + +VL +V +AP D VLI GE GTGKELIA +H LS+R P +++NC Sbjct: 832 DDIVARSPAMRQVLLRVEQVAPTDSTVLITGETGTGKELIARAVHNLSARKGRPLVTVNC 891 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+L L++SELFG E GA+TGA R GRFE ADGGTLFLDE+ P +Q K+LRV+E Sbjct: 892 ASLPPTLMESELFGREKGAYTGALSRMAGRFEVADGGTLFLDEVGELPPELQAKMLRVLE 951 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 G ER+G ++ L VNVR++ ATN DL +V G FR DL RL + +PPLRER D Sbjct: 952 EGRFERLGSTKSLHVNVRILAATNRDLAQLVQAGRFRRDLYYRLNVFPIAIPPLRERPED 1011 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I + F Q + + + +R+ + L + WPGN+REL+NV+E ++ S Sbjct: 1012 IPPLVWAFIHQFEKRMGKHVQRVL-KRSMDALERHAWPGNVRELRNVIEHAMIVSSGSTL 1070 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN---Q 302 + + + + E+ + L + + Sbjct: 1071 KV--FPPMIRAEDSSAEVLN-----------------LEESERRHILRVLTLAGWRVAGK 1111 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 AAE+LGL A +KK + Sbjct: 1112 GGAAEILGLKPTTLEARMKKLGV 1134 >UniRef50_Q02BY0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02BY0_SOLUE Length = 447 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 126/325 (38%), Positives = 186/325 (57%), Gaps = 7/325 (2%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKP-VLIIGERGTGKELIASRLHYLSSRWQGPF 60 A K ++ E+ EV+ V ++ + +L+ GE GTGK+L+A LHY S R PF Sbjct: 128 APQKREVIAESGPMREVMNFVRRVSASEATTILLEGENGTGKDLVAKTLHYQSVRQAEPF 187 Query: 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 I++NCAA+ E LL+SELFG+E GAFT A+ + G FE AD GTLFLDE+ P+M+Q KL Sbjct: 188 IAINCAAIPETLLESELFGYEKGAFTDARAQKRGIFELADKGTLFLDEIGEIPLMLQAKL 247 Query: 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR 180 LRV+E R+GG + + +++R++ ATN +L V EG FR DL RL + +PPLR Sbjct: 248 LRVLEEQTFRRLGGLKDIHLDLRVIAATNKNLREAVKEGAFRQDLYFRLNVIQILIPPLR 307 Query: 181 ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 ER DI+ M ++F R+ K + G T+ A + L+ + WPGN+REL+N +ERS+ Sbjct: 308 ERPEDIVPMTKFFIEHYNRKFKRQI-EGVTDSAAKLLMAHDWPGNVRELRNAIERSMILE 366 Query: 241 GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY 300 + + I + + + LPT L L E+ LL +L++ + Sbjct: 367 EGAYITAASLPISISRPENG-LPLGNAAGMELPTDGLSL----EDNERSLLVRALEKTEG 421 Query: 301 NQKRAAELLGLTYHQFRALLKKHQI 325 NQ +AA LL +T R +KK + Sbjct: 422 NQTQAARLLRITRDTLRYKMKKFNL 446 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 114/318 (35%), Positives = 177/318 (55%), Gaps = 13/318 (4%) Query: 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 +LG + + ++ +AP D VLI GE GTGKEL+A +HY S R + F+ ++C+A Sbjct: 149 MLGSSPVMQNLFSRMLKVAPTDGTVLITGESGTGKELVARAIHYHSRRRENEFVPVDCSA 208 Query: 68 LNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG 127 L ENLL+SELFGH G+FTGA + G FE A+ GT F DE++ M +Q KLLRVI+ Sbjct: 209 LVENLLESELFGHVKGSFTGALQSKKGLFELANHGTFFFDEISNLSMDIQAKLLRVIQER 268 Query: 128 ELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187 E +VGG+ ++V++R++ A+N DL A + E FR DL RL + LPPLRER DI Sbjct: 269 EFTQVGGAVRIKVDLRIMVASNRDLRAAIAENKFREDLFYRLHVIPIHLPPLRERGKDIE 328 Query: 188 LMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPL 247 + YF + M R+I P + A + LL+Y WPGN+REL+N +ER++ + Sbjct: 329 ELVNYFVLHMSRKIGRE-APKVSREAMDVLLSYAWPGNVRELENTIERTLILKDDAVIKP 387 Query: 248 DDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAE 307 + + D ++ P + + + E++ ++ L + ++AA Sbjct: 388 EHLPQDIRQQPPDLRSFSDKMVS------------LKDLERDYIRFVLSRTNGGIQKAAG 435 Query: 308 LLGLTYHQFRALLKKHQI 325 +LG+ +KK+ + Sbjct: 436 ILGINRKTLSMKMKKYGL 453 >UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWE6_HALO1 Length = 684 Score = 493 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 126/323 (39%), Positives = 186/323 (57%), Gaps = 10/323 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +N++GE+++ + +Q+ + V I GE GTGKELIA+ +HY S+R F++ Sbjct: 371 RFENIIGESSAMQAIFDQLRKVVDTRATVCIEGETGTGKELIATAIHYESNRRDKMFVAQ 430 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAAL ENLL+SELFGH+ GAFT A G FE ADGGTLFLDE+ P+ +Q K+LRV Sbjct: 431 NCAALPENLLESELFGHKKGAFTSADTDKKGLFEIADGGTLFLDEIGEMPLSLQAKVLRV 490 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ G + +G ++ QV+ R++CATN DL A V +G+FR DL RL ++LPPLRER Sbjct: 491 LQEGTIRPLGSTRERQVDARIICATNRDLAAEVEKGSFRQDLYYRLVVFPIRLPPLRERR 550 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG-T 242 DI + E+F + RE + + GF++ + + Y+WPGNIREL+N V+R V + Sbjct: 551 EDIPPLCEHFLKRYSREFRQEVL-GFSQECLDVMSTYQWPGNIRELENEVQRLVIQTDAG 609 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 S + ++ K IA L+ Q E+ LL +L++ N+ Sbjct: 610 SWIEVSELSPRLRKVEGTLARIA--------PKKGTLKAMMEQVERWLLAEALREHDNNK 661 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 R A+ LG+T L K+ + Sbjct: 662 TRTAQSLGITREGLHKKLSKYSM 684 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 493 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 112/322 (34%), Positives = 172/322 (53%), Gaps = 10/322 (3%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +N++G + +V + V +A VLI GE GTGK L+A +H SR F+ + Sbjct: 140 GLENIVGHEHRMQKVFDMVERIADTRATVLITGESGTGKSLLARAIHRRGSRRDQAFVEV 199 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 C A+ E+LL+SELFGH AG+FTGA G+F +AD GT+FLDE+ TA +Q KLLRV Sbjct: 200 ACGAMPESLLESELFGHAAGSFTGATGDKIGKFTQADKGTIFLDEIGTASASLQVKLLRV 259 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E E VG ++ +V+ R++ ATN L V G FR DL R+ +++PPLRER Sbjct: 260 LQELEFEPVGSTKTQRVDTRVILATNEKLEQAVAAGRFRQDLYYRVNVINIEVPPLRERI 319 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 +DI L+A +F + C E GF++ + Y WPGN+REL+NVVER+V Sbjct: 320 ADIPLLANHFLQRTCEESGKR-SQGFSDDVITAMQRYNWPGNVRELQNVVERAVLLGRGP 378 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 ++D+ + + P L+E E+ ++ L+ ++N+ Sbjct: 379 KVQVEDLTPAIASGQI---------VSIDPVGNKALKEALESPERAIILDVLEMHQWNRN 429 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 A+ LG+ +K+ + Sbjct: 430 ATADALGINRTTLYKKMKRLGL 451 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 493 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 118/321 (36%), Positives = 176/321 (54%), Gaps = 7/321 (2%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 D ++ ++ F EV E +A + +LI+GE GTGKELIA +H S R +S+N Sbjct: 147 TDAIVFASDRFREVYELTLEVAASEANILILGESGTGKELIAGAIHRHSKRRGRRILSIN 206 Query: 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVI 124 CAAL++ LL+S+LFGH GAFTGA G E AD GTLF+DE+ +M+Q KLLRVI Sbjct: 207 CAALSDTLLESQLFGHVRGAFTGATTNQKGLLEEADSGTLFMDEIGDMSLMLQAKLLRVI 266 Query: 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERES 184 + G+ VG ++ +V++R V ATN +L V EG FR DL RL + LPPLRER+ Sbjct: 267 QEGDFIPVGATRAKKVDIRFVAATNKNLEKEVAEGRFREDLYYRLNVISIPLPPLRERKE 326 Query: 185 DIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSD 244 DI +A +F + + + + FT A + +L Y WPGNIREL+NVVER+V + Sbjct: 327 DIEPLARHFLRKYNQRMNKEVDR-FTREALDLMLGYSWPGNIRELENVVERAVILARSGV 385 Query: 245 YPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKR 304 D + + S +S + E+E ++ +L + +++ R Sbjct: 386 VTTDHLPMWKKNVASTAATGPASALSSHQLV------SLENVEREHIRQTLARTGFHKSR 439 Query: 305 AAELLGLTYHQFRALLKKHQI 325 AE+LG++ + + + Sbjct: 440 TAEILGISRKTLDRKIAEFGL 460 >UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VFM6_DESVV Length = 569 Score = 493 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 168/324 (51%), Gaps = 17/324 (5%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A + L+G + + + + LAP D VL+ GE GTGKEL+A LH R GP I Sbjct: 261 APGEWGLVGLSPAMQRIYHLLEDLAPTDTTVLVTGESGTGKELVAEALHNAGPRATGPLI 320 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 +NCAAL E LL+SELFGH GAFTGA + GRF+ A GGT+FLDE+ VQ +LL Sbjct: 321 KVNCAALPETLLESELFGHVRGAFTGALRDRVGRFQLAHGGTIFLDEIGDLSPQVQLRLL 380 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 RV++ E ERVG ++ +V+VR++ AT+ +L V G FR DL RL + +PPLRE Sbjct: 381 RVLQEREFERVGDTRTTRVDVRVIAATHRNLRERVASGLFREDLYYRLRVVELHMPPLRE 440 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 R D+ L+AE+F ++ + GFTE A L+ + WPGN+REL++ VE Sbjct: 441 RHEDLALLAEHFVGVFNQQFSRCVM-GFTEAASRALMTHSWPGNVRELRHAVEHGFILCK 499 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 L D+ D A ++ +L++ N Sbjct: 500 GERIDLADLPPDVQGTEASVFPRAERSGVHE----------------AAVREALKKAGGN 543 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 + RAA LLG+ L ++ I Sbjct: 544 KARAARLLGVARQTLYRKLAEYGI 567 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 493 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 118/322 (36%), Positives = 175/322 (54%), Gaps = 9/322 (2%) Query: 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 L G++ + + ++ + A D LI+GE GTGKE+ A +H S+R GPFI +N Sbjct: 142 FSKLKGKSRALRDTIQIAAKAAKTDAVTLILGESGTGKEICARAIHEASARKNGPFIPVN 201 Query: 65 CAALNENLLDSELFGHEAGAFTGA-QKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 C ++ L +SELFG+E G FTGA +K G+ E ADGGTLFLDE+ P+ +Q KLLRV Sbjct: 202 CGSIPSALFESELFGYEPGTFTGAEKKGKAGKIEEADGGTLFLDEIGELPLDMQVKLLRV 261 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ + R+G + ++NVR + ATN D+ M+ E TFR+DL RL + +PPLR R Sbjct: 262 LQEKVIYRIGDASGRKINVRFIAATNQDIEKMMKEKTFRSDLYYRLNVIQITMPPLRVRT 321 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI ++A YF Q + K+P P A L Y WPGN+REL+N++ER V Sbjct: 322 DDIPVLARYFLKQFAVQYKMP-EPELAPDALSFLQAYHWPGNVRELRNLMERMVILSEKP 380 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 ++ A+ E+ +LP EK+L++ +L++ N+ Sbjct: 381 FIDRASLLRFFQGNETQPSGSAIPESGTLPVEK-------ENMEKQLIEKALRKAGGNKS 433 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 AA+ LG++ LKK I Sbjct: 434 AAAKELGISRVTLYQKLKKFGI 455 >UniRef50_C6NRF1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NRF1_9GAMM Length = 466 Score = 493 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 181/324 (55%), Gaps = 16/324 (4%) Query: 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFI 61 A + ++G + ++ + + +A D PVLI GE GTGKEL A +H SSR GPF+ Sbjct: 152 ASKEVEMVGASPVMQQIYQDIRKVASTDAPVLITGESGTGKELAAQAIHERSSRKDGPFV 211 Query: 62 SLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLL 121 ++NC AL NL+ SELFGHE G+FTGA +R GR E A GGTLFLDE+ P+ +Q LL Sbjct: 212 AVNCGALPANLIHSELFGHEKGSFTGAHERKIGRIESASGGTLFLDEIGDLPLDLQVNLL 271 Query: 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRE 181 R ++ ++RVGG + + V+VR++ AT+ DL + G FR DL RL +++PPLR+ Sbjct: 272 RFLQEQTIQRVGGREDIAVDVRVLAATHVDLEKAIQLGNFRQDLYYRLNVLQIRMPPLRD 331 Query: 182 RESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 RE DI L+A+Y + E + GF+E A + + NY WPGNIREL N V R++ Sbjct: 332 REGDIPLLAQYVFNRFADERGQRV-KGFSEDALQIMANYDWPGNIRELINRVRRAMVMCD 390 Query: 242 TSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYN 301 D+ ++ + + + L + + E++ ++ +L + Sbjct: 391 KFLITAADLGLERRRNSR---------------IRVSLNQARDLAERDAIRSALADNLGS 435 Query: 302 QKRAAELLGLTYHQFRALLKKHQI 325 RAAE L ++ L++KH I Sbjct: 436 VTRAAEQLQISRVSLYRLMEKHGI 459 >UniRef50_D2QZ64 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Planctomycetaceae RepID=D2QZ64_9PLAN Length = 677 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 131/322 (40%), Positives = 183/322 (56%), Gaps = 8/322 (2%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 + L+G + V Q++ AP VLI GE G GKEL+A +HY S R +GPF+ L Sbjct: 355 AESELVGSSEVLSSVQRQIARAAPSRATVLIRGESGVGKELVARAVHYSSPRKRGPFVCL 414 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAAL+E+LL+SELFGHE GAFTGA R G+FE A GTL LDE+ +Q K LRV Sbjct: 415 NCAALSESLLESELFGHEKGAFTGATDRKIGKFESAHQGTLMLDEIGEMSPSIQAKFLRV 474 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 +E ERVGGSQP++V+VR++ ATN DL V EG FR DL RL +Q+PPLR+R Sbjct: 475 LEGHPFERVGGSQPIKVDVRVIAATNRDLEKAVAEGAFRRDLYFRLNVVEIQVPPLRKRP 534 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 DI+ +A +F + E L GF+ A E L YRWPGN+RELKNV+ER+V Sbjct: 535 EDIIELAHFFLQRFNAETGRKL-RGFSPAATERLQQYRWPGNVRELKNVIERAVVLSRGD 593 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 +D+ + +T+ +P EK + +L+ +++ Sbjct: 594 VVEPEDLHLSNLATASESGDNPSPKTSFVPM-------SLDDIEKRHILATLKATNWHKS 646 Query: 304 RAAELLGLTYHQFRALLKKHQI 325 RAA +LG+ ++++++ Sbjct: 647 RAAAILGVERSTLDRKIRRYEL 668 >UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX45_DESBD Length = 529 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 122/327 (37%), Positives = 179/327 (54%), Gaps = 4/327 (1%) Query: 1 MAEYKDN--LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQG 58 +A ++G++ + LEV + V+ +A VL++GE GTGK LI +H LS R Sbjct: 189 IARENHGPYIVGKSQAMLEVEQYVAKVAITKATVLLLGESGTGKTLIGRIIHELSDRKTH 248 Query: 59 PFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQE 118 PFI +NCAA+ ENLL++ELFG+E GAFTGA PGRFE A GT+FLDE+ P+ +Q Sbjct: 249 PFIKVNCAAIPENLLEAELFGYEKGAFTGANSTKPGRFEDAHLGTIFLDEIGELPLTLQS 308 Query: 119 KLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPP 178 KLLRV++ E ER+G ++ +V+VR++ ATN +L A+V G FR DL RL V +P Sbjct: 309 KLLRVLQEREFERIGSNKTRKVDVRIISATNRELEALVGHGLFREDLYYRLNVFPVHVPA 368 Query: 179 LRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 +RER+ DI + +F +M RE L T A + LL Y WPGN+REL+N+VER V Sbjct: 369 VRERKEDIPRLLNHFQKEMEREYGRSLT--LTTGALDLLLAYDWPGNVRELENLVERLVI 426 Query: 239 RHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQG 298 + + + D + + E+ + +L++ Sbjct: 427 LTDDKPVEAELVRGFLTPETHRPGPARHAPEPPAHPEQEDYCQPLKETERREVLAALKRN 486 Query: 299 KYNQKRAAELLGLTYHQFRALLKKHQI 325 + Q +AA L LT Q ++K + Sbjct: 487 AWIQYKAARELNLTPRQMGYRVRKFNL 513 >UniRef50_Q46PB6 Helix-turn-helix, Fis-type n=7 Tax=Burkholderiaceae RepID=Q46PB6_RALEJ Length = 592 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 130/329 (39%), Positives = 185/329 (56%), Gaps = 11/329 (3%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 ++G + F V V+ +AP D VL +GE G GKE+ A+ LH LS R GP++++NCA Sbjct: 260 GVVGISAGFNTVCHMVNKVAPTDATVLFLGESGVGKEVFANNLHRLSKRADGPYVAVNCA 319 Query: 67 ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEY 126 ++ E+L++SELFG E G FTGA GRFERADGGTLFLDE+ T Q KLLR ++ Sbjct: 320 SIPEHLMESELFGVERGGFTGATTSRAGRFERADGGTLFLDEVGTLSFTAQGKLLRALQQ 379 Query: 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDI 186 GE+ERVG ++ +VNVR+V ATN +L V G FR DL RL +Q+PPLRER DI Sbjct: 380 GEIERVGDTRTRKVNVRVVAATNVNLREAVKAGHFREDLFFRLNVFPIQVPPLRERRDDI 439 Query: 187 MLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH-GTSDY 245 LM +F +M R+ + GF ERA + + Y WPGN+REL+N++ER+V Sbjct: 440 PLMMNWFLQRMARKHDKHI-TGFRERAVDAMFAYDWPGNVRELENMIERAVILAEDGGAL 498 Query: 246 PLDDII---------IDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQ 296 L + KR ++ + P + R + E +L+ ++ Sbjct: 499 DLCHLFTSGEEVDTTAFMLKRSGSIGRVSEASEAESPPSAAEGRPGLAETEVAMLRAAVA 558 Query: 297 QGKYNQKRAAELLGLTYHQFRALLKKHQI 325 + N RAA +LG++ L+K+ I Sbjct: 559 EANGNLSRAARVLGISRPTLAYRLQKYGI 587 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 115/320 (35%), Positives = 184/320 (57%), Gaps = 8/320 (2%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 + ++G++ + +V + + +D VLI GE GTGKEL+A +H+ R Q F + Sbjct: 137 GYEGMIGKSEAMTQVFHLIEKVKNVDSSVLITGESGTGKELVARAIHFSGKRKQEHFEVV 196 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRV 123 NCAA+ E+LL+SELFG+E GAFTGA R G+F+ A+ GT+FLDE+ P+ +Q KLLRV Sbjct: 197 NCAAIPEHLLESELFGYEKGAFTGAATRKEGKFQLANRGTIFLDEIGDMPLALQAKLLRV 256 Query: 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERE 183 ++ E+ ++G ++ +++VR++ ATN L V EGTFR DL RL + LPPLRER+ Sbjct: 257 LQKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEGTFREDLYFRLHVIHIHLPPLRERQ 316 Query: 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243 D+ + ++F +E+ GF A+ LL Y++PGNIREL N+VE S+ Sbjct: 317 EDLPYLLQHFLHTFNQELGKS-MKGFRSDAQRELLAYQYPGNIRELSNIVESSMVIADGE 375 Query: 244 DYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQK 303 L+D+ + ++ S L + + EK+ + +L+ ++K Sbjct: 376 YIELEDLPMFIREKGEGFAKQKGS-------LDDYIGRPLKELEKDFILATLKHNDNHRK 428 Query: 304 RAAELLGLTYHQFRALLKKH 323 + AE+LG++ R LK++ Sbjct: 429 KTAEMLGISERGLRDKLKQY 448 >UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH1_9FIRM Length = 478 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 121/320 (37%), Positives = 174/320 (54%), Gaps = 16/320 (5%) Query: 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 +++ + + V+E + +A +D VLI GE GTGKEL A +H PFI +NC Sbjct: 167 DIIFRSRAIAAVVELATKVADVDSTVLITGESGTGKELFAKLIHRHGRGDNRPFIKINCG 226 Query: 67 ALNENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 A+ E LL+SELFG++ GAFTGA++ PG FE ADGGTLFLDE+ P ++Q KLLRVI+ Sbjct: 227 AIPETLLESELFGYDGGAFTGAKREGKPGLFELADGGTLFLDEIGEMPPVLQVKLLRVIQ 286 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + RVGG + VNVR++ ATN DL MV +GTFR DL RL + +PPLRER+ D Sbjct: 287 EKAVIRVGGVKQKSVNVRIIAATNRDLAHMVQQGTFREDLYYRLMVVPLHIPPLRERKED 346 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 I L+ ++F + ++ + L Y WPGN+R+L+N++ER V ++ Sbjct: 347 IPLLVKHFLDKFNKKFGFN--KVILPDVIDRLTEYSWPGNVRQLENIIERLVVTTPGNEI 404 Query: 246 PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRA 305 D + R P LP L+E EK LL + +Q N + Sbjct: 405 TADMLPQQVNARIP------------LPKTGTKLKEAVAATEKYLLTETFRQY-GNWNKV 451 Query: 306 AELLGLTYHQFRALLKKHQI 325 A++LG+ K+ + Sbjct: 452 ADVLGIDRTTACRKAVKYGL 471 >UniRef50_B2A661 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A661_NATTJ Length = 577 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 117/323 (36%), Positives = 181/323 (56%), Gaps = 16/323 (4%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 + ++ ++ +L Q + +A D VLI GE G GKE++A +H S+R + PFI + Sbjct: 261 GEGEIVAKSKVKKRLLAQAARVAAFDSTVLITGETGVGKEIVAKYIHQNSNRSEQPFIKI 320 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQK-RHPGRFERADGGTLFLDELATAPMMVQEKLLR 122 NC A+ ENLL+SELFGHE G+FTGA K PG+FE A+GGTL LDE+ +Q KLLR Sbjct: 321 NCGAIPENLLESELFGHEPGSFTGASKNGKPGKFEIANGGTLLLDEIGELSKDLQVKLLR 380 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 ++ E+ R+GG +P Q++V+++ TN DL MV++G FR DL RL+ + +PPLRER Sbjct: 381 ALQDQEITRIGGVKPRQLDVKIIACTNRDLEEMVSQGEFREDLYYRLSVVPLYIPPLRER 440 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 DI + ++ + + + G + A E L++Y WPGN+REL+N++ER V Sbjct: 441 PDDIPFLIRHYIRKYNEKYG--VNKGLSSSALEELVSYNWPGNVRELENMIERLVIMVPE 498 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 + D+ E+ L L + + EK +LQ +++Q N Sbjct: 499 NLIETSDLPQQIK------------ESNVKILENLSLPDAVSKLEKRMLQKAMEQSN-NT 545 Query: 303 KRAAELLGLTYHQFRALLKKHQI 325 + AA++LG+ L K+ + Sbjct: 546 REAAQILGVAQSTVVRKLDKYGL 568 >UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Clostridium RepID=Q17ZX8_CLOD6 Length = 591 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 112/326 (34%), Positives = 176/326 (53%), Gaps = 16/326 (4%) Query: 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 +N++GE+ + ++ + VLI GE GTGKEL A +H S+R PFI++ Sbjct: 276 KLENIIGESVAIRNSKKEALIASKSTSTVLITGESGTGKELFARAIHNHSNRVDNPFIAV 335 Query: 64 NCAALNENLLDSELFGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLR 122 NCAA+ +NLL+SELFG+E GAFTGA+K G FE A G++FLDE+ + +Q KLLR Sbjct: 336 NCAAIPDNLLESELFGYEEGAFTGAKKGGKLGMFEVAHKGSIFLDEIGDMSLHLQSKLLR 395 Query: 123 VIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRER 182 V++ EL ++G + ++VR++ ATN DL MV GTFR DL RL ++LP LRER Sbjct: 396 VLQEKELNKIGSKSNVSIDVRIIAATNKDLEKMVQNGTFREDLYYRLNVIPIKLPSLRER 455 Query: 183 ESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGT 242 + DI L+ ++ + +++ + R + ++ Y+WPGNIREL+N++E SV + Sbjct: 456 KEDIPLIIKHMVKEYSKKLDKNVI-DIDSRVVDAMMEYKWPGNIRELQNIIEYSVNMSSS 514 Query: 243 SDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQ 302 S ++ I E + + EK + +L + K + Sbjct: 515 SIITMNVIPQKIKNTSVEELEVKSDRIIP-----------LDELEKIEIIKALNKYKDYK 563 Query: 303 KR---AAELLGLTYHQFRALLKKHQI 325 K A+ LG++ ++K+ I Sbjct: 564 KDKELTAKALGISRATLYRKIEKYNI 589 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 121/349 (34%), Positives = 176/349 (50%), Gaps = 30/349 (8%) Query: 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 D + G + + Q++ +AP D VLI GE GTGKEL A +H S R P +++NC Sbjct: 140 DEMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAARAIHAGSRRADRPLVAVNC 199 Query: 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIE 125 AA+ E L++SELFGHE GAFTGA G+FE A GTLFLDE+ + Q K+LR+++ Sbjct: 200 AAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFLDEIGDMSLKTQAKILRILQ 259 Query: 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESD 185 + ERVGG + ++V+VR++ ATN +L + GTFR DL RL + LPPLRERE D Sbjct: 260 EQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLYYRLRVFPLVLPPLREREGD 319 Query: 186 IMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY 245 + L+ + FA ++ R+ + F A+E L Y WPGN+REL+N VER + H + Sbjct: 320 VPLLIDLFAQRLARDYGVRPAT-FAPDAQEALARYPWPGNVRELRNFVERMLILHAGLEV 378 Query: 246 PLDDIIIDPFKRRPP-----------------------------EDAIAVSETTSLPTLP 276 + + R + + +L Sbjct: 379 TRSMLPPEFLPRSGAGMNGSPGAATAAGGRAASGTGGATGQGGDPLPDHLPDMAALLAPG 438 Query: 277 LDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI 325 +DL+ + E + L L + N R AE +G+ LK + I Sbjct: 439 MDLKAARAAFEAQYLAARLAECGGNVTRLAEAVGIERSHLYRKLKGYNI 487 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.222 0.942 Lambda K H 0.267 0.0675 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,260,460,786 Number of Sequences: 3077464 Number of extensions: 242062208 Number of successful extensions: 530726 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 7081 Number of HSP's successfully gapped in prelim test: 282 Number of HSP's that attempted gapping in prelim test: 507435 Number of HSP's gapped (non-prelim): 8630 length of query: 325 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 196 effective length of database: 643,403,500 effective search space: 126107086000 effective search space used: 126107086000 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.7 bits) S2: 95 (40.5 bits)