18/01/2012 13:03:38 : INFO  : Run start: Wed Jan 18 13:03:38 GMT 2012
18/01/2012 13:03:38 : INFO  : Initialised job
18/01/2012 13:03:38 : INFO  : Renaming log file 'phyre2_20120118_130337.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/f45b95884bb774e9/phyre_20120118_130337.log'
18/01/2012 13:03:38 : INFO  : Initialised job:
Sequence
>batch____
MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF
ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL
LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLR
ERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH
GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSLQQGKY
NQKRAAELLGLTYHQFRALLKKHQI

18/01/2012 13:03:38 : INFO  : Checked sequence
18/01/2012 13:03:38 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 13:03:38 : INFO  : PSI-BLAST 3 iterations
18/01/2012 13:06:11 : INFO  : PSI-BLAST 5 iterations
18/01/2012 13:09:52 : INFO  : Finished PSI-BLAST
18/01/2012 13:09:52 : INFO  : Running Buildali to generate a3m file
18/01/2012 13:56:18 : INFO  : Converting to HMM
18/01/2012 13:56:23 : INFO  : Calibrating HMM
18/01/2012 13:56:32 : INFO  : Searching HMM database
18/01/2012 14:02:37 : INFO  : Finished buildali
18/01/2012 14:02:37 : INFO  : Predicting secondary structure
18/01/2012 14:02:38 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 14:02:38 : INFO  : Predicting Disordered regions
18/01/2012 14:02:38 : INFO  : Predicted Disorder (Disopred)
18/01/2012 14:02:38 : INFO  : Running memsat_svm check
18/01/2012 14:04:19 : INFO  : Globular protein
18/01/2012 14:04:19 : INFO  : Predicted Transmembrane (memsat_svm) ID 'f45b95884bb774e9'
18/01/2012 14:04:19 : INFO  : Initialising fold library search
18/01/2012 14:04:19 : INFO  : Initialised search input
18/01/2012 14:04:19 : INFO  : Building Ensemble models
18/01/2012 14:04:20 : INFO  : Building hh.c1ny5A_.model.1.pdb
18/01/2012 14:04:20 : INFO  : Building hh.c3dzdA_.model.2.pdb
18/01/2012 14:04:20 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f45b95884bb774e9/hh.c3dzdA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f45b95884bb774e9/c3dzdA_.2.pdb
18/01/2012 14:04:21 : INFO  : Building hh.c2c99A_.model.3.pdb
18/01/2012 14:04:21 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f45b95884bb774e9/hh.c2c99A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f45b95884bb774e9/c2c99A_.3.pdb
18/01/2012 14:04:21 : INFO  : Building hh.c3pfiB_.model.4.pdb
18/01/2012 14:04:21 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f45b95884bb774e9/hh.c3pfiB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f45b95884bb774e9/c3pfiB_.11.pdb
18/01/2012 14:04:21 : INFO  : Building c1ny5A_.1.pdb
18/01/2012 14:04:22 : INFO  : Building c3dzdA_.2.pdb
18/01/2012 14:04:22 : INFO  : Building c2c99A_.3.pdb
18/01/2012 14:04:23 : INFO  : Building d1ny5a2.4.pdb
18/01/2012 14:04:23 : INFO  : Building c1ojlF_.5.pdb
18/01/2012 14:04:23 : INFO  : Building c1qvrB_.6.pdb
18/01/2012 14:04:24 : INFO  : Building c3co5B_.7.pdb
18/01/2012 14:04:24 : INFO  : Building d1r6bx3.8.pdb
18/01/2012 14:04:25 : INFO  : Building d1um8a_.9.pdb
18/01/2012 14:04:25 : INFO  : Building c3pxiB_.10.pdb
18/01/2012 14:04:26 : INFO  : Building c3pfiB_.11.pdb
18/01/2012 14:04:27 : INFO  : Building c1r6bX_.12.pdb
18/01/2012 14:04:27 : INFO  : Building d1qvra3.13.pdb
18/01/2012 14:04:27 : INFO  : Building c1in8A_.14.pdb
18/01/2012 14:04:28 : INFO  : Building c3nbxX_.15.pdb
18/01/2012 14:04:28 : INFO  : Building c3k1jA_.16.pdb
18/01/2012 14:04:29 : INFO  : Building c3pvsA_.17.pdb
18/01/2012 14:04:29 : INFO  : Building c3hteC_.18.pdb
18/01/2012 14:04:30 : INFO  : Building c2r44A_.19.pdb
18/01/2012 14:04:30 : INFO  : Building d1l8qa2.20.pdb
18/01/2012 14:04:37 : INFO  : Finished HH model building
18/01/2012 14:04:37 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 14:04:43 : INFO  : html domain output complete ID 'f45b95884bb774e9'
18/01/2012 15:09:44 : INFO  : Run end  : Wed Jan 18 15:09:44 GMT 2012
