BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (55 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P0AFW3 Ribosome modulation factor n=72 Tax=Gammaproteob...   114   1e-24
UniRef50_A0KVM0 Ribosome modulation factor n=21 Tax=Gammaproteob...    84   1e-15
UniRef50_B4EVD2 Ribosome modulation factor n=3 Tax=Proteus RepID...    78   7e-14
UniRef50_Q7MKW6 Ribosome modulation factor n=37 Tax=Gammaproteob...    77   2e-13
UniRef50_C3NQJ0 Ribosome modulation factor n=13 Tax=Vibrio RepID...    72   6e-12
UniRef50_B3PIL7 Ribosome modulation factor-related protein n=3 T...    67   2e-10
UniRef50_Q1QXW0 Ribosome modulation factor-related protein n=3 T...    65   1e-09
UniRef50_Q21JW8 Ribosome modulation factor n=4 Tax=Gammaproteoba...    63   3e-09
UniRef50_Q48JX9 Ribosome modulation factor-related protein n=13 ...    61   1e-08
UniRef50_A4VM40 Ribosome modulation factor-related protein n=11 ...    58   9e-08
UniRef50_A4BKG7 Putative uncharacterized protein n=1 Tax=Reineke...    41   0.011
UniRef50_Q1YPL6 Putative uncharacterized protein n=1 Tax=gamma p...    39   0.038

>UniRef50_P0AFW3 Ribosome modulation factor n=72 Tax=Gammaproteobacteria
          RepID=RMF_ECO57
          Length = 55

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA 55
          MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA
Sbjct: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA 55


>UniRef50_A0KVM0 Ribosome modulation factor n=21 Tax=Gammaproteobacteria
          RepID=A0KVM0_SHESA
          Length = 58

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 43/52 (82%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRV 52
          MKRQKRDRL+RA  +G+QAGI GRSKE+CPY  L+ RSQWLGGWRE +  RV
Sbjct: 1  MKRQKRDRLDRAFSKGFQAGIGGRSKELCPYANLDSRSQWLGGWREGVDGRV 52


>UniRef50_B4EVD2 Ribosome modulation factor n=3 Tax=Proteus RepID=B4EVD2_PROMH
          Length = 56

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA 55
          MKRQKRDRL RA  +GYQAG+ GRSKE CPY  ++ RS WLGGWR+AM DR  +A
Sbjct: 1  MKRQKRDRLARALSKGYQAGMQGRSKEQCPYFAIDARSHWLGGWRQAMEDRPGLA 55


>UniRef50_Q7MKW6 Ribosome modulation factor n=37 Tax=Gammaproteobacteria
          RepID=Q7MKW6_VIBVY
          Length = 57

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 44/52 (84%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRV 52
          MKRQKRDRLERA  +GY+AG+ GRS+E CPYQ ++ RS WLGGWR+A +D++
Sbjct: 1  MKRQKRDRLERAQSQGYKAGLNGRSQEECPYQQMDARSYWLGGWRDARSDKL 52


>UniRef50_C3NQJ0 Ribosome modulation factor n=13 Tax=Vibrio RepID=C3NQJ0_VIBCJ
          Length = 70

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 40/52 (76%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRV 52
          MKRQKRDRLERA  +GY+AG+ GRS + CPYQ    RS WLGGWR+A  D++
Sbjct: 14 MKRQKRDRLERAQSQGYKAGLNGRSHDECPYQQTEVRSYWLGGWRDARNDKL 65


>UniRef50_B3PIL7 Ribosome modulation factor-related protein n=3
          Tax=Gammaproteobacteria RepID=B3PIL7_CELJU
          Length = 74

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 38/50 (76%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMAD 50
          MKRQKRD+ ERA  +GYQAGI GRSK +CP+++   R QWL GWRE+  D
Sbjct: 1  MKRQKRDQTERAFVKGYQAGIEGRSKSLCPHESGLARQQWLNGWRESRMD 50


>UniRef50_Q1QXW0 Ribosome modulation factor-related protein n=3
          Tax=Oceanospirillales RepID=Q1QXW0_CHRSD
          Length = 69

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 36/50 (72%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMAD 50
          MKRQKRDR +RA+  GY+AG+ GRS++ CP Q +N R  W+ GWRE   D
Sbjct: 1  MKRQKRDRFQRAYVHGYKAGMTGRSRDDCPSQDINLREYWMSGWREGRGD 50


>UniRef50_Q21JW8 Ribosome modulation factor n=4 Tax=Gammaproteobacteria
          RepID=Q21JW8_SACD2
          Length = 68

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 33/50 (66%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMAD 50
          MKRQKRD   RA  RGYQAG+ GRS+ +CP+ T   +  WL GWRE   D
Sbjct: 1  MKRQKRDHTSRAFTRGYQAGVEGRSRSLCPHSTGEIKQSWLTGWREGRED 50


>UniRef50_Q48JX9 Ribosome modulation factor-related protein n=13
          Tax=Gammaproteobacteria RepID=Q48JX9_PSE14
          Length = 108

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMAD 50
          M+R KRD LERA  RGYQ G+ G+S+E+CP+   + R  W+ GWRE   D
Sbjct: 38 MRRLKRDPLERAFLRGYQYGVHGKSRELCPFTLPSVRQAWINGWREGRGD 87


>UniRef50_A4VM40 Ribosome modulation factor-related protein n=11
          Tax=Gammaproteobacteria RepID=A4VM40_PSEU5
          Length = 71

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMAD 50
          M+R KRD +ERA  RGYQ GI G+S+++CP+     R  W+ GWRE   D
Sbjct: 1  MRRLKRDPMERAFLRGYQHGIHGKSRDLCPFSHPQVRQAWINGWREGRGD 50


>UniRef50_A4BKG7 Putative uncharacterized protein n=1 Tax=Reinekea blandensis
          MED297 RepID=A4BKG7_9GAMM
          Length = 66

 Score = 41.2 bits (95), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 7  DRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREA 47
          D L +A+Q+GY  G+AG+  E CPY+    ++ W  GW + 
Sbjct: 9  DTLNKAYQQGYMTGLAGKPNEECPYRHDVLKAAWEAGWDDG 49


>UniRef50_Q1YPL6 Putative uncharacterized protein n=1 Tax=gamma proteobacterium
          HTCC2207 RepID=Q1YPL6_9GAMM
          Length = 68

 Score = 39.3 bits (90), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRS-QWLGGWREAMAD 50
          MK+ KRD   R+  +GYQA + GR+    PYQ  +  +  W  GWRE   D
Sbjct: 1  MKKHKRDLEHRSFVKGYQAAVQGRTLAALPYQEKSIMAYHWSRGWREGKED 51


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q48JX9 Ribosome modulation factor-related protein n=13 ...    81   8e-15
UniRef50_A4VM40 Ribosome modulation factor-related protein n=11 ...    80   2e-14
UniRef50_C3NQJ0 Ribosome modulation factor n=13 Tax=Vibrio RepID...    79   4e-14
UniRef50_A0KVM0 Ribosome modulation factor n=21 Tax=Gammaproteob...    77   2e-13
UniRef50_Q21JW8 Ribosome modulation factor n=4 Tax=Gammaproteoba...    76   3e-13
UniRef50_Q1QXW0 Ribosome modulation factor-related protein n=3 T...    75   7e-13
UniRef50_B3PIL7 Ribosome modulation factor-related protein n=3 T...    75   1e-12
UniRef50_P0AFW3 Ribosome modulation factor n=72 Tax=Gammaproteob...    74   1e-12
UniRef50_B4EVD2 Ribosome modulation factor n=3 Tax=Proteus RepID...    74   1e-12
UniRef50_Q7MKW6 Ribosome modulation factor n=37 Tax=Gammaproteob...    70   2e-11

Sequences not found previously or not previously below threshold:

UniRef50_Q1YPL6 Putative uncharacterized protein n=1 Tax=gamma p...    46   4e-04
UniRef50_A4BKG7 Putative uncharacterized protein n=1 Tax=Reineke...    41   0.007
UniRef50_Q1MYZ8 Putative uncharacterized protein n=1 Tax=Bermane...    40   0.022

>UniRef50_Q48JX9 Ribosome modulation factor-related protein n=13
          Tax=Gammaproteobacteria RepID=Q48JX9_PSE14
          Length = 108

 Score = 81.2 bits (199), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMAD 50
          M+R KRD LERA  RGYQ G+ G+S+E+CP+   + R  W+ GWRE   D
Sbjct: 38 MRRLKRDPLERAFLRGYQYGVHGKSRELCPFTLPSVRQAWINGWREGRGD 87


>UniRef50_A4VM40 Ribosome modulation factor-related protein n=11
          Tax=Gammaproteobacteria RepID=A4VM40_PSEU5
          Length = 71

 Score = 80.0 bits (196), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMAD 50
          M+R KRD +ERA  RGYQ GI G+S+++CP+     R  W+ GWRE   D
Sbjct: 1  MRRLKRDPMERAFLRGYQHGIHGKSRDLCPFSHPQVRQAWINGWREGRGD 50


>UniRef50_C3NQJ0 Ribosome modulation factor n=13 Tax=Vibrio RepID=C3NQJ0_VIBCJ
          Length = 70

 Score = 79.2 bits (194), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 40/52 (76%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRV 52
          MKRQKRDRLERA  +GY+AG+ GRS + CPYQ    RS WLGGWR+A  D++
Sbjct: 14 MKRQKRDRLERAQSQGYKAGLNGRSHDECPYQQTEVRSYWLGGWRDARNDKL 65


>UniRef50_A0KVM0 Ribosome modulation factor n=21 Tax=Gammaproteobacteria
          RepID=A0KVM0_SHESA
          Length = 58

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/52 (71%), Positives = 43/52 (82%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRV 52
          MKRQKRDRL+RA  +G+QAGI GRSKE+CPY  L+ RSQWLGGWRE +  RV
Sbjct: 1  MKRQKRDRLDRAFSKGFQAGIGGRSKELCPYANLDSRSQWLGGWREGVDGRV 52


>UniRef50_Q21JW8 Ribosome modulation factor n=4 Tax=Gammaproteobacteria
          RepID=Q21JW8_SACD2
          Length = 68

 Score = 76.2 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 33/50 (66%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMAD 50
          MKRQKRD   RA  RGYQAG+ GRS+ +CP+ T   +  WL GWRE   D
Sbjct: 1  MKRQKRDHTSRAFTRGYQAGVEGRSRSLCPHSTGEIKQSWLTGWREGRED 50


>UniRef50_Q1QXW0 Ribosome modulation factor-related protein n=3
          Tax=Oceanospirillales RepID=Q1QXW0_CHRSD
          Length = 69

 Score = 75.0 bits (183), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 37/51 (72%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADR 51
          MKRQKRDR +RA+  GY+AG+ GRS++ CP Q +N R  W+ GWRE   D+
Sbjct: 1  MKRQKRDRFQRAYVHGYKAGMTGRSRDDCPSQDINLREYWMSGWREGRGDQ 51


>UniRef50_B3PIL7 Ribosome modulation factor-related protein n=3
          Tax=Gammaproteobacteria RepID=B3PIL7_CELJU
          Length = 74

 Score = 74.6 bits (182), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 39/51 (76%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADR 51
          MKRQKRD+ ERA  +GYQAGI GRSK +CP+++   R QWL GWRE+  D+
Sbjct: 1  MKRQKRDQTERAFVKGYQAGIEGRSKSLCPHESGLARQQWLNGWRESRMDQ 51


>UniRef50_P0AFW3 Ribosome modulation factor n=72 Tax=Gammaproteobacteria
          RepID=RMF_ECO57
          Length = 55

 Score = 74.2 bits (181), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA 55
          MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA
Sbjct: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA 55


>UniRef50_B4EVD2 Ribosome modulation factor n=3 Tax=Proteus RepID=B4EVD2_PROMH
          Length = 56

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA 55
          MKRQKRDRL RA  +GYQAG+ GRSKE CPY  ++ RS WLGGWR+AM DR  +A
Sbjct: 1  MKRQKRDRLARALSKGYQAGMQGRSKEQCPYFAIDARSHWLGGWRQAMEDRPGLA 55


>UniRef50_Q7MKW6 Ribosome modulation factor n=37 Tax=Gammaproteobacteria
          RepID=Q7MKW6_VIBVY
          Length = 57

 Score = 70.4 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/52 (65%), Positives = 44/52 (84%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRV 52
          MKRQKRDRLERA  +GY+AG+ GRS+E CPYQ ++ RS WLGGWR+A +D++
Sbjct: 1  MKRQKRDRLERAQSQGYKAGLNGRSQEECPYQQMDARSYWLGGWRDARSDKL 52


>UniRef50_Q1YPL6 Putative uncharacterized protein n=1 Tax=gamma proteobacterium
          HTCC2207 RepID=Q1YPL6_9GAMM
          Length = 68

 Score = 45.7 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQ-WLGGWREAMAD 50
          MK+ KRD   R+  +GYQA + GR+    PYQ  +  +  W  GWRE   D
Sbjct: 1  MKKHKRDLEHRSFVKGYQAAVQGRTLAALPYQEKSIMAYHWSRGWREGKED 51


>UniRef50_A4BKG7 Putative uncharacterized protein n=1 Tax=Reinekea blandensis
          MED297 RepID=A4BKG7_9GAMM
          Length = 66

 Score = 41.5 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 7  DRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMA 49
          D L +A+Q+GY  G+AG+  E CPY+    ++ W  GW +   
Sbjct: 9  DTLNKAYQQGYMTGLAGKPNEECPYRHDVLKAAWEAGWDDGSG 51


>UniRef50_Q1MYZ8 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
          RepID=Q1MYZ8_9GAMM
          Length = 66

 Score = 40.0 bits (92), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 7  DRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMA 49
          + LE+A++ G+ AG+ G+   +CPY+     + W  GW +   
Sbjct: 11 ENLEKAYRHGFMAGMVGKPVLVCPYRAEMIVNAWEAGWHDGKE 53


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q48JX9 Ribosome modulation factor-related protein n=13 ...    80   2e-14
UniRef50_A4VM40 Ribosome modulation factor-related protein n=11 ...    78   8e-14
UniRef50_C3NQJ0 Ribosome modulation factor n=13 Tax=Vibrio RepID...    77   1e-13
UniRef50_A0KVM0 Ribosome modulation factor n=21 Tax=Gammaproteob...    75   5e-13
UniRef50_Q21JW8 Ribosome modulation factor n=4 Tax=Gammaproteoba...    75   6e-13
UniRef50_Q1QXW0 Ribosome modulation factor-related protein n=3 T...    75   8e-13
UniRef50_B3PIL7 Ribosome modulation factor-related protein n=3 T...    73   2e-12
UniRef50_B4EVD2 Ribosome modulation factor n=3 Tax=Proteus RepID...    72   5e-12
UniRef50_P0AFW3 Ribosome modulation factor n=72 Tax=Gammaproteob...    72   7e-12
UniRef50_Q7MKW6 Ribosome modulation factor n=37 Tax=Gammaproteob...    68   7e-11
UniRef50_Q1YPL6 Putative uncharacterized protein n=1 Tax=gamma p...    62   8e-09

Sequences not found previously or not previously below threshold:

UniRef50_A4BKG7 Putative uncharacterized protein n=1 Tax=Reineke...    41   0.014
UniRef50_Q1MYZ8 Putative uncharacterized protein n=1 Tax=Bermane...    41   0.016


CONVERGED!
>UniRef50_Q48JX9 Ribosome modulation factor-related protein n=13
          Tax=Gammaproteobacteria RepID=Q48JX9_PSE14
          Length = 108

 Score = 80.4 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMAD 50
          M+R KRD LERA  RGYQ G+ G+S+E+CP+   + R  W+ GWRE   D
Sbjct: 38 MRRLKRDPLERAFLRGYQYGVHGKSRELCPFTLPSVRQAWINGWREGRGD 87


>UniRef50_A4VM40 Ribosome modulation factor-related protein n=11
          Tax=Gammaproteobacteria RepID=A4VM40_PSEU5
          Length = 71

 Score = 78.1 bits (191), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMAD 50
          M+R KRD +ERA  RGYQ GI G+S+++CP+     R  W+ GWRE   D
Sbjct: 1  MRRLKRDPMERAFLRGYQHGIHGKSRDLCPFSHPQVRQAWINGWREGRGD 50


>UniRef50_C3NQJ0 Ribosome modulation factor n=13 Tax=Vibrio RepID=C3NQJ0_VIBCJ
          Length = 70

 Score = 77.3 bits (189), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 40/52 (76%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRV 52
          MKRQKRDRLERA  +GY+AG+ GRS + CPYQ    RS WLGGWR+A  D++
Sbjct: 14 MKRQKRDRLERAQSQGYKAGLNGRSHDECPYQQTEVRSYWLGGWRDARNDKL 65


>UniRef50_A0KVM0 Ribosome modulation factor n=21 Tax=Gammaproteobacteria
          RepID=A0KVM0_SHESA
          Length = 58

 Score = 75.4 bits (184), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/52 (71%), Positives = 43/52 (82%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRV 52
          MKRQKRDRL+RA  +G+QAGI GRSKE+CPY  L+ RSQWLGGWRE +  RV
Sbjct: 1  MKRQKRDRLDRAFSKGFQAGIGGRSKELCPYANLDSRSQWLGGWREGVDGRV 52


>UniRef50_Q21JW8 Ribosome modulation factor n=4 Tax=Gammaproteobacteria
          RepID=Q21JW8_SACD2
          Length = 68

 Score = 75.4 bits (184), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 33/50 (66%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMAD 50
          MKRQKRD   RA  RGYQAG+ GRS+ +CP+ T   +  WL GWRE   D
Sbjct: 1  MKRQKRDHTSRAFTRGYQAGVEGRSRSLCPHSTGEIKQSWLTGWREGRED 50


>UniRef50_Q1QXW0 Ribosome modulation factor-related protein n=3
          Tax=Oceanospirillales RepID=Q1QXW0_CHRSD
          Length = 69

 Score = 74.6 bits (182), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 37/51 (72%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADR 51
          MKRQKRDR +RA+  GY+AG+ GRS++ CP Q +N R  W+ GWRE   D+
Sbjct: 1  MKRQKRDRFQRAYVHGYKAGMTGRSRDDCPSQDINLREYWMSGWREGRGDQ 51


>UniRef50_B3PIL7 Ribosome modulation factor-related protein n=3
          Tax=Gammaproteobacteria RepID=B3PIL7_CELJU
          Length = 74

 Score = 73.5 bits (179), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 39/51 (76%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADR 51
          MKRQKRD+ ERA  +GYQAGI GRSK +CP+++   R QWL GWRE+  D+
Sbjct: 1  MKRQKRDQTERAFVKGYQAGIEGRSKSLCPHESGLARQQWLNGWRESRMDQ 51


>UniRef50_B4EVD2 Ribosome modulation factor n=3 Tax=Proteus RepID=B4EVD2_PROMH
          Length = 56

 Score = 71.9 bits (175), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA 55
          MKRQKRDRL RA  +GYQAG+ GRSKE CPY  ++ RS WLGGWR+AM DR  +A
Sbjct: 1  MKRQKRDRLARALSKGYQAGMQGRSKEQCPYFAIDARSHWLGGWRQAMEDRPGLA 55


>UniRef50_P0AFW3 Ribosome modulation factor n=72 Tax=Gammaproteobacteria
          RepID=RMF_ECO57
          Length = 55

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA 55
          MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA
Sbjct: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRVVMA 55


>UniRef50_Q7MKW6 Ribosome modulation factor n=37 Tax=Gammaproteobacteria
          RepID=Q7MKW6_VIBVY
          Length = 57

 Score = 68.5 bits (166), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/52 (65%), Positives = 44/52 (84%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMADRV 52
          MKRQKRDRLERA  +GY+AG+ GRS+E CPYQ ++ RS WLGGWR+A +D++
Sbjct: 1  MKRQKRDRLERAQSQGYKAGLNGRSQEECPYQQMDARSYWLGGWRDARSDKL 52


>UniRef50_Q1YPL6 Putative uncharacterized protein n=1 Tax=gamma proteobacterium
          HTCC2207 RepID=Q1YPL6_9GAMM
          Length = 68

 Score = 61.5 bits (148), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 1  MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQ-WLGGWREAMAD 50
          MK+ KRD   R+  +GYQA + GR+    PYQ  +  +  W  GWRE   D
Sbjct: 1  MKKHKRDLEHRSFVKGYQAAVQGRTLAALPYQEKSIMAYHWSRGWREGKED 51


>UniRef50_A4BKG7 Putative uncharacterized protein n=1 Tax=Reinekea blandensis
          MED297 RepID=A4BKG7_9GAMM
          Length = 66

 Score = 40.7 bits (94), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 7  DRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMA 49
          D L +A+Q+GY  G+AG+  E CPY+    ++ W  GW +   
Sbjct: 9  DTLNKAYQQGYMTGLAGKPNEECPYRHDVLKAAWEAGWDDGSG 51


>UniRef50_Q1MYZ8 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
          RepID=Q1MYZ8_9GAMM
          Length = 66

 Score = 40.7 bits (94), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 9  LERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGWREAMA 49
          LE+A++ G+ AG+ G+   +CPY+     + W  GW +   
Sbjct: 13 LEKAYRHGFMAGMVGKPVLVCPYRAEMIVNAWEAGWHDGKE 53


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.312    0.141    0.470 

Lambda     K      H
   0.267   0.0426    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,491,360
Number of Sequences: 3077464
Number of extensions: 11051308
Number of successful extensions: 28080
Number of sequences better than 1.0e-01: 16
Number of HSP's better than  0.1 without gapping: 43
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 28035
Number of HSP's gapped (non-prelim): 46
length of query: 55
length of database: 1,040,396,356
effective HSP length: 28
effective length of query: 27
effective length of database: 954,227,364
effective search space: 25764138828
effective search space used: 25764138828
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 87 (38.1 bits)